Query 048004
Match_columns 943
No_of_seqs 679 out of 4223
Neff 10.5
Searched_HMMs 46136
Date Fri Mar 29 05:21:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048004.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048004hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 1.2E-45 2.5E-50 427.5 13.5 249 2-258 394-653 (889)
2 PLN00113 leucine-rich repeat r 100.0 1.1E-40 2.4E-45 413.0 27.1 533 147-906 69-606 (968)
3 PLN00113 leucine-rich repeat r 100.0 7.4E-40 1.6E-44 405.6 27.7 516 122-834 69-589 (968)
4 PLN03210 Resistant to P. syrin 100.0 6.2E-37 1.3E-41 377.2 28.0 256 2-276 419-686 (1153)
5 KOG0472 Leucine-rich repeat pr 100.0 5.2E-32 1.1E-36 267.0 -12.8 98 177-276 45-142 (565)
6 KOG0472 Leucine-rich repeat pr 99.9 2.7E-30 5.9E-35 254.9 -15.1 247 169-520 60-311 (565)
7 KOG0618 Serine/threonine phosp 99.9 1.9E-28 4.1E-33 267.2 -6.1 80 591-675 241-321 (1081)
8 KOG4194 Membrane glycoprotein 99.9 7.3E-27 1.6E-31 241.4 4.8 85 178-264 79-165 (873)
9 KOG0618 Serine/threonine phosp 99.9 1.5E-27 3.2E-32 260.3 -2.0 100 175-276 43-142 (1081)
10 KOG4194 Membrane glycoprotein 99.9 2.4E-26 5.2E-31 237.6 3.3 224 385-675 78-304 (873)
11 PLN03210 Resistant to P. syrin 99.9 2.1E-23 4.6E-28 257.7 23.3 344 501-889 553-911 (1153)
12 KOG0444 Cytoskeletal regulator 99.9 1.7E-25 3.6E-30 232.7 -3.7 70 730-801 307-376 (1255)
13 KOG0444 Cytoskeletal regulator 99.9 1.7E-24 3.8E-29 225.2 -4.4 370 176-757 6-380 (1255)
14 KOG4237 Extracellular matrix p 99.7 3.8E-19 8.3E-24 176.5 -2.2 103 179-282 69-175 (498)
15 KOG4237 Extracellular matrix p 99.7 8.3E-18 1.8E-22 167.1 -0.6 93 183-277 52-146 (498)
16 PRK15387 E3 ubiquitin-protein 99.6 1.9E-14 4.1E-19 164.5 15.9 256 559-883 202-457 (788)
17 PRK15387 E3 ubiquitin-protein 99.6 2.7E-14 5.7E-19 163.3 16.0 219 591-862 242-460 (788)
18 KOG0617 Ras suppressor protein 99.5 4.5E-16 9.7E-21 136.4 -2.8 106 170-276 26-132 (264)
19 KOG0617 Ras suppressor protein 99.5 4.9E-16 1.1E-20 136.2 -5.2 128 141-276 27-155 (264)
20 PRK15370 E3 ubiquitin-protein 99.5 1.3E-13 2.9E-18 158.9 11.4 83 177-267 178-260 (754)
21 PRK15370 E3 ubiquitin-protein 99.4 8.3E-13 1.8E-17 152.4 9.0 90 177-276 199-288 (754)
22 KOG4658 Apoptotic ATPase [Sign 99.3 2.6E-12 5.6E-17 150.8 7.7 107 175-282 543-653 (889)
23 cd00116 LRR_RI Leucine-rich re 99.3 1.3E-12 2.7E-17 141.0 1.6 90 735-824 217-316 (319)
24 cd00116 LRR_RI Leucine-rich re 99.2 2.4E-12 5.3E-17 138.8 1.6 91 735-825 189-288 (319)
25 KOG4341 F-box protein containi 98.9 1.1E-10 2.3E-15 118.3 -1.4 259 528-824 162-435 (483)
26 KOG4341 F-box protein containi 98.9 6.9E-11 1.5E-15 119.6 -5.6 182 386-572 139-334 (483)
27 PF14580 LRR_9: Leucine-rich r 98.8 3.8E-09 8.3E-14 98.8 4.8 129 143-282 15-151 (175)
28 KOG0532 Leucine-rich repeat (L 98.8 2.2E-10 4.9E-15 120.3 -5.0 106 168-276 89-194 (722)
29 COG4886 Leucine-rich repeat (L 98.7 2E-08 4.4E-13 111.4 6.0 102 174-277 113-215 (394)
30 PF14580 LRR_9: Leucine-rich r 98.7 1.3E-08 2.8E-13 95.2 3.7 100 175-278 17-120 (175)
31 KOG3207 Beta-tubulin folding c 98.7 6.5E-09 1.4E-13 106.2 1.7 161 504-675 119-282 (505)
32 KOG3207 Beta-tubulin folding c 98.7 3.1E-09 6.7E-14 108.5 -1.2 116 738-858 196-312 (505)
33 PRK15386 type III secretion pr 98.6 1.9E-07 4.2E-12 98.1 12.0 94 845-942 154-249 (426)
34 KOG1909 Ran GTPase-activating 98.6 3.3E-08 7.1E-13 98.5 3.2 186 591-825 92-308 (382)
35 PF13855 LRR_8: Leucine rich r 98.6 7E-08 1.5E-12 73.8 4.3 58 177-234 1-60 (61)
36 KOG0532 Leucine-rich repeat (L 98.5 3.5E-09 7.6E-14 111.6 -4.5 173 175-419 73-245 (722)
37 KOG1259 Nischarin, modulator o 98.5 2.3E-08 5E-13 96.8 -0.3 61 196-258 280-340 (490)
38 COG4886 Leucine-rich repeat (L 98.4 2.3E-07 5E-12 103.0 5.9 95 180-276 96-191 (394)
39 PRK15386 type III secretion pr 98.4 1.4E-06 3E-11 91.8 9.3 37 664-703 52-88 (426)
40 PLN03150 hypothetical protein; 98.3 4.3E-07 9.4E-12 105.3 5.8 93 178-270 419-513 (623)
41 PF13855 LRR_8: Leucine rich r 98.3 1.5E-06 3.2E-11 66.5 5.2 59 739-798 1-60 (61)
42 PLN03150 hypothetical protein; 98.2 2.1E-06 4.5E-11 99.7 7.0 98 167-264 432-532 (623)
43 PF12799 LRR_4: Leucine Rich r 98.2 1.4E-06 3.1E-11 60.5 3.4 39 178-216 2-40 (44)
44 KOG1259 Nischarin, modulator o 98.2 6.3E-07 1.4E-11 87.1 1.8 99 175-277 282-380 (490)
45 KOG2120 SCF ubiquitin ligase, 98.1 8.5E-08 1.8E-12 93.0 -5.5 163 735-904 206-373 (419)
46 KOG2120 SCF ubiquitin ligase, 98.1 1.5E-07 3.3E-12 91.3 -4.4 164 502-675 206-374 (419)
47 KOG1909 Ran GTPase-activating 98.1 6.6E-07 1.4E-11 89.4 -0.6 67 502-568 181-251 (382)
48 KOG0531 Protein phosphatase 1, 98.0 1.7E-06 3.7E-11 95.9 0.7 100 173-276 91-191 (414)
49 PF12799 LRR_4: Leucine Rich r 98.0 6.3E-06 1.4E-10 57.3 3.0 40 200-240 1-40 (44)
50 KOG4579 Leucine-rich repeat (L 97.9 4.5E-06 9.7E-11 71.7 0.8 90 175-266 51-141 (177)
51 KOG1947 Leucine rich repeat pr 97.8 1.5E-06 3.2E-11 100.0 -3.5 60 851-910 380-443 (482)
52 KOG4579 Leucine-rich repeat (L 97.8 2.8E-06 6.1E-11 72.9 -1.0 99 177-277 27-129 (177)
53 KOG0531 Protein phosphatase 1, 97.7 5.5E-06 1.2E-10 91.9 -1.8 99 175-277 70-168 (414)
54 KOG1859 Leucine-rich repeat pr 97.6 3.1E-06 6.8E-11 92.3 -4.8 155 170-335 102-289 (1096)
55 KOG1947 Leucine rich repeat pr 97.3 2.6E-05 5.7E-10 89.6 -2.3 116 555-677 185-308 (482)
56 KOG1859 Leucine-rich repeat pr 97.3 2E-05 4.4E-10 86.3 -3.0 97 175-276 185-284 (1096)
57 KOG2982 Uncharacterized conser 97.2 0.00017 3.6E-09 70.7 2.0 162 459-654 93-265 (418)
58 KOG3665 ZYG-1-like serine/thre 97.2 0.00023 4.9E-09 82.5 3.5 89 167-257 137-230 (699)
59 KOG3665 ZYG-1-like serine/thre 97.2 0.00028 6.1E-09 81.7 3.8 135 200-371 122-261 (699)
60 KOG2982 Uncharacterized conser 97.1 0.00014 3E-09 71.3 0.7 205 589-821 69-285 (418)
61 KOG1644 U2-associated snRNP A' 97.1 0.0007 1.5E-08 62.9 4.5 103 176-281 41-150 (233)
62 KOG2739 Leucine-rich acidic nu 96.7 0.0011 2.3E-08 64.7 2.5 105 175-282 41-154 (260)
63 PF00560 LRR_1: Leucine Rich R 96.5 0.00095 2.1E-08 38.3 0.7 19 202-220 2-20 (22)
64 KOG2123 Uncharacterized conser 96.4 0.00039 8.5E-09 67.6 -2.4 102 177-281 19-127 (388)
65 COG5238 RNA1 Ran GTPase-activa 96.3 0.0017 3.7E-08 63.1 1.5 84 175-258 28-131 (388)
66 KOG1644 U2-associated snRNP A' 96.2 0.0037 8.1E-08 58.2 3.2 94 179-276 21-118 (233)
67 PF00560 LRR_1: Leucine Rich R 95.8 0.0055 1.2E-07 35.2 1.6 22 178-199 1-22 (22)
68 KOG2123 Uncharacterized conser 95.3 0.0021 4.6E-08 62.7 -2.3 79 175-254 39-124 (388)
69 KOG0473 Leucine-rich repeat pr 95.0 0.0015 3.2E-08 62.0 -4.1 83 175-258 40-122 (326)
70 PF13504 LRR_7: Leucine rich r 94.9 0.015 3.3E-07 30.8 1.3 16 201-216 2-17 (17)
71 KOG0473 Leucine-rich repeat pr 94.9 0.0027 5.8E-08 60.3 -2.9 87 189-277 30-117 (326)
72 PF13306 LRR_5: Leucine rich r 94.4 0.26 5.7E-06 44.3 9.0 93 734-837 7-100 (129)
73 KOG2739 Leucine-rich acidic nu 94.3 0.014 2.9E-07 57.2 0.3 84 195-281 38-126 (260)
74 PF13306 LRR_5: Leucine rich r 93.8 0.11 2.5E-06 46.7 5.5 116 142-272 7-127 (129)
75 COG5238 RNA1 Ran GTPase-activa 93.8 0.014 3E-07 56.9 -0.7 146 732-881 85-252 (388)
76 PF13504 LRR_7: Leucine rich r 93.1 0.064 1.4E-06 28.4 1.5 17 177-193 1-17 (17)
77 smart00370 LRR Leucine-rich re 92.4 0.11 2.5E-06 31.2 2.1 21 199-219 1-21 (26)
78 smart00369 LRR_TYP Leucine-ric 92.4 0.11 2.5E-06 31.2 2.1 21 199-219 1-21 (26)
79 KOG3864 Uncharacterized conser 88.0 0.06 1.3E-06 50.6 -2.6 83 592-675 102-187 (221)
80 KOG3864 Uncharacterized conser 86.9 0.14 3E-06 48.3 -1.0 41 845-885 149-190 (221)
81 smart00369 LRR_TYP Leucine-ric 84.1 0.67 1.4E-05 27.8 1.4 21 176-196 1-21 (26)
82 smart00370 LRR Leucine-rich re 84.1 0.67 1.4E-05 27.8 1.4 21 176-196 1-21 (26)
83 smart00364 LRR_BAC Leucine-ric 79.5 1.2 2.5E-05 26.6 1.2 18 200-217 2-19 (26)
84 smart00365 LRR_SD22 Leucine-ri 78.2 1.7 3.6E-05 26.1 1.6 17 199-215 1-17 (26)
85 PF13516 LRR_6: Leucine Rich r 72.7 1.7 3.7E-05 25.4 0.7 13 201-213 3-15 (24)
86 smart00367 LRR_CC Leucine-rich 72.6 2.2 4.8E-05 25.5 1.2 12 895-906 3-14 (26)
87 smart00368 LRR_RI Leucine rich 55.6 9 0.00019 23.4 1.6 14 200-213 2-15 (28)
88 KOG4308 LRR-containing protein 51.4 0.16 3.6E-06 56.5 -11.5 38 591-628 144-185 (478)
89 KOG3763 mRNA export factor TAP 30.6 28 0.00061 38.7 1.7 31 847-877 270-307 (585)
90 PF05725 FNIP: FNIP Repeat; I 27.5 1E+02 0.0022 21.3 3.5 31 664-695 12-42 (44)
91 KOG3763 mRNA export factor TAP 24.0 53 0.0012 36.7 2.3 17 904-920 549-565 (585)
92 TIGR00864 PCC polycystin catio 22.2 24 0.00052 47.5 -0.8 56 882-941 5-62 (2740)
93 PRK04841 transcriptional regul 21.6 1.4E+02 0.0031 37.3 5.9 72 13-101 260-332 (903)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=1.2e-45 Score=427.52 Aligned_cols=249 Identities=30% Similarity=0.476 Sum_probs=209.1
Q ss_pred CCCcchhhhhcccCCCcchhhhhhhhccCCCCceeChhhHHHHHHHcCCccCCCCCCcHHHHHHHHHHHHHhCCcccccc
Q 048004 2 RCRIIPALAVSYYYLPPTLKQCFAHCSLLPKDYEFEEEEIILLWCAAGFLDHKEDENPSEDLGRDFFKELCSRSFFQQSA 81 (943)
Q Consensus 2 ~~~i~~~L~lSY~~L~~~lk~cfl~cslfpe~~~i~~~~Li~~wiaeG~i~~~~~~~~~~~~~~~~~~~L~~~~ll~~~~ 81 (943)
++.|+++|++|||+||.++|.||+|||+|||||+|++++||.|||||||+++..++++++++|++|+++||+|||++..+
T Consensus 394 ~~~i~~iLklSyd~L~~~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~ 473 (889)
T KOG4658|consen 394 EESILPILKLSYDNLPEELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEER 473 (889)
T ss_pred hhhhHHhhhccHhhhhHHHHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhhcc
Confidence 46799999999999998899999999999999999999999999999999987778999999999999999999999865
Q ss_pred --CCCCceehhhHHHHHHHHhcc-----cceEEEeecccc--ccccccCCceeEEEEEccCcccccccccccCCCCccee
Q 048004 82 --TDASLFVMHDLINDLARWAAG-----ETYFTLEYTSEV--NKQQCFSRNLRHLSYIRGDYDGVQRFGDLYDIQHLRTF 152 (943)
Q Consensus 82 --~~~~~~~mHdlv~dla~~i~~-----~~~~~~~~~~~~--~~~~~~~~~~r~ls~~~~~~~~~~~~~~~~~~~~Lr~L 152 (943)
+...+|+|||+|||||.|+|+ ++...+...... ......+..+|+++........ ......+++|++|
T Consensus 474 ~~~~~~~~kmHDvvRe~al~ias~~~~~~e~~iv~~~~~~~~~~~~~~~~~~rr~s~~~~~~~~---~~~~~~~~~L~tL 550 (889)
T KOG4658|consen 474 DEGRKETVKMHDVVREMALWIASDFGKQEENQIVSDGVGLSEIPQVKSWNSVRRMSLMNNKIEH---IAGSSENPKLRTL 550 (889)
T ss_pred cccceeEEEeeHHHHHHHHHHhccccccccceEEECCcCccccccccchhheeEEEEeccchhh---ccCCCCCCccceE
Confidence 456899999999999999999 565554432111 1122344678999998775543 3445567789999
Q ss_pred eeecccCCCCCCCCCCcccccc-CCCcccEEEecCcc-ccccCccccCCCcccEEecCCCCCcccchhHhhcccCcEEec
Q 048004 153 LPVMLTNSRPGFLAPSILPKLL-KPQRLRAFSLRGYY-IFELPDSVGDLRYLRYLNLCGTKIRTLPESVNKLYNLHSLLL 230 (943)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~-~l~~L~~L~L~~~~-i~~lp~~~~~L~~L~~L~L~~n~i~~lp~~i~~L~~L~~L~L 230 (943)
.+..... ....++..+| .|+.||||||++|. +..+|++|+.|.+||||+|+++.|+.+|..+++|++|.+||+
T Consensus 551 ll~~n~~-----~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl 625 (889)
T KOG4658|consen 551 LLQRNSD-----WLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNL 625 (889)
T ss_pred EEeecch-----hhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheecc
Confidence 8877531 1345666777 89999999999887 799999999999999999999999999999999999999999
Q ss_pred CCCcchhhchHhhcccccccccccCCCC
Q 048004 231 EDCDRLKKLCADMGNLAKLHHLKNSNTK 258 (943)
Q Consensus 231 ~~~~~l~~lp~~~~~L~~L~~L~l~~~~ 258 (943)
..+..+..+|..+..|++||+|.+....
T Consensus 626 ~~~~~l~~~~~i~~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 626 EVTGRLESIPGILLELQSLRVLRLPRSA 653 (889)
T ss_pred ccccccccccchhhhcccccEEEeeccc
Confidence 9977777777777779999999987654
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=1.1e-40 Score=412.96 Aligned_cols=533 Identities=18% Similarity=0.201 Sum_probs=276.5
Q ss_pred CCcceeeeecccCCCCCCCCCCccccccCCCcccEEEecCcccc-ccCccc-cCCCcccEEecCCCCCc-ccchhHhhcc
Q 048004 147 QHLRTFLPVMLTNSRPGFLAPSILPKLLKPQRLRAFSLRGYYIF-ELPDSV-GDLRYLRYLNLCGTKIR-TLPESVNKLY 223 (943)
Q Consensus 147 ~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~-~lp~~~-~~L~~L~~L~L~~n~i~-~lp~~i~~L~ 223 (943)
.+++.|.+.+.. +...+++.+..+++|++|+|++|.+. .+|..+ ..+++||+|+|++|.++ .+|. +.++
T Consensus 69 ~~v~~L~L~~~~------i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~ 140 (968)
T PLN00113 69 SRVVSIDLSGKN------ISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIP 140 (968)
T ss_pred CcEEEEEecCCC------ccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc--cccC
Confidence 356666554431 12233333447788888888888764 577654 37788888888888776 4553 4577
Q ss_pred cCcEEecCCCcchhhchHhhcccccccccccCCCCccccCCcccCCccccccccceeeccCCCCCchhhhcccccCCeee
Q 048004 224 NLHSLLLEDCDRLKKLCADMGNLAKLHHLKNSNTKSLEEMPVGIGKLTSLQTLCNFVVGKGSGSGLRELKLLTHLHGTLN 303 (943)
Q Consensus 224 ~L~~L~L~~~~~l~~lp~~~~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~l~~l~~L~~L~~~l~ 303 (943)
+|++|++++|.....+|..++++++|++|++++|.....+|..++++++|++|+...+
T Consensus 141 ~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n---------------------- 198 (968)
T PLN00113 141 NLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASN---------------------- 198 (968)
T ss_pred CCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCC----------------------
Confidence 7888888876655677777888888888888877755566766777777777622111
Q ss_pred eccccccCCcccchhhhcCCCCCCCeEEEEeecCCCCCCCcchhcHHhhhccCCCCCCcceEEEeccCCCCCCcCcCCCC
Q 048004 304 ISKLENVKCVGDAMEAQMDGKKNLKELSLKWTCSTDGSSSREAETEMGVLDMLKPHTNLEQFCIKGYGGMKFPTWLGDSL 383 (943)
Q Consensus 304 ~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~ 383 (943)
.+ ....+..+..+++|+.|++++|... ..+|.++..
T Consensus 199 --~l------~~~~p~~l~~l~~L~~L~L~~n~l~----------------------------------~~~p~~l~~-- 234 (968)
T PLN00113 199 --QL------VGQIPRELGQMKSLKWIYLGYNNLS----------------------------------GEIPYEIGG-- 234 (968)
T ss_pred --CC------cCcCChHHcCcCCccEEECcCCccC----------------------------------CcCChhHhc--
Confidence 00 0112233444444444444432110 123333332
Q ss_pred CCCccEEEEecCCCCCCCC-CCCCCCCCCeeEEccccCeeEeCccccCCCCCccceeecccccccccccccCCcccccCC
Q 048004 384 FSNLVTLEFEDCGMCTALP-SVGQLPSLKHLTVRGMSRVKRLGSEFCGNDPPCLETLRFENMREWEDWIPHGSGQRVEGF 462 (943)
Q Consensus 384 l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~ 462 (943)
+++|+.|++++|.+.+.+| .++.+++|+.|++++|.....++.. ...+
T Consensus 235 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-------------------------------l~~l 283 (968)
T PLN00113 235 LTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPS-------------------------------IFSL 283 (968)
T ss_pred CCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchh-------------------------------Hhhc
Confidence 4555666666555554444 4555555555555554321111110 2234
Q ss_pred CcccEEecccCcccccCCCCCCCccceEEeccccCccccCCCCCcccEEEEcCCcCeeeeccccCCCCCccEEEEecccc
Q 048004 463 PKLRELHILRCSKLKGTFPEHLPALEMLVIEGCEELLVSVSSLPALCKLHIGGCKKVVWRRPLKLRLPKLEELEIENMKE 542 (943)
Q Consensus 463 ~~L~~L~l~~c~~l~~~~p~~l~~L~~L~l~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 542 (943)
++|++|++++| .+.+.+|. .+..+++|+.|++++|.+....+..+..+++|+.|++++|..
T Consensus 284 ~~L~~L~Ls~n-~l~~~~p~------------------~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l 344 (968)
T PLN00113 284 QKLISLDLSDN-SLSGEIPE------------------LVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKF 344 (968)
T ss_pred cCcCEEECcCC-eeccCCCh------------------hHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCC
Confidence 55666666653 34334442 344566677777777766665555555666666666665544
Q ss_pred cchhhhhhhhhhhccCCccEEeecCCCCcccchhhhhhHHhhhhhcccccccEEEeecCCCCCCCCccccCccccceEEe
Q 048004 543 QTYIWKSHKELLQDICSLKRLTIDSCPKLQSLVAEEEKDQQQQLCELSCRLEYLTLSGCQGLVKLPQSSLSLNSLREIEI 622 (943)
Q Consensus 543 ~~~i~~~~~~~~~~l~~L~~L~l~~~~~L~~l~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l 622 (943)
...+ +..+..+ ++|+.|++++|...+.+|..+..+++|+.|++
T Consensus 345 ~~~~----p~~l~~~---------------------------------~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l 387 (968)
T PLN00113 345 SGEI----PKNLGKH---------------------------------NNLTVLDLSTNNLTGEIPEGLCSSGNLFKLIL 387 (968)
T ss_pred cCcC----ChHHhCC---------------------------------CCCcEEECCCCeeEeeCChhHhCcCCCCEEEC
Confidence 3221 1112222 34445555555444445555555555555555
Q ss_pred ccCCCccccCC-ccCCCCccEEEeccCCCCcccccccccCCCCCCCeEEEeecCCCccccCccCCCCccEEEeccCCCcc
Q 048004 623 YKCSSLVSFPE-VALPSKLKKIEIRECDALKSLPEAWMCGTNSSLEILSIQGCHSLTYIAGVQLPPSLKRLEIDFCDNLR 701 (943)
Q Consensus 623 ~~~~~l~~~~~-~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~c~~L~ 701 (943)
++|...+.+|. +..+++|+.|++++|...+.+|..+ ..+++|+.|++++|...+.+
T Consensus 388 ~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~--~~l~~L~~L~Ls~N~l~~~~--------------------- 444 (968)
T PLN00113 388 FSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEF--TKLPLVYFLDISNNNLQGRI--------------------- 444 (968)
T ss_pred cCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhH--hcCCCCCEEECcCCcccCcc---------------------
Confidence 55544444442 3345555555555554444444443 45555555555555432211
Q ss_pred ccccccccccCCCCCCCeeeeeccCCcccccccCCCCCCcCeEeecCCCCceecCCCCCCCCCcceEeecccCCCCcccc
Q 048004 702 TLTVEEGIQSSSSSSSSSRSIWTCENLKFLPSGLHNLRQLQEIEIWECENLVSFPQGGLPCAKLSMLTVYGCERLKALPK 781 (943)
Q Consensus 702 ~l~~~~~~~~~~~~~L~~l~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~ 781 (943)
|..+..+++|+.|++++|...+.+|..+ ..++|+.|++++|.+.+.+|.
T Consensus 445 ------------------------------~~~~~~l~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~ 493 (968)
T PLN00113 445 ------------------------------NSRKWDMPSLQMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPR 493 (968)
T ss_pred ------------------------------ChhhccCCCCcEEECcCceeeeecCccc-ccccceEEECcCCccCCccCh
Confidence 2223334455555555554444444332 224555555555555555555
Q ss_pred ccCCCCccceEEecCCCchhhhhhhhccccCCCCCcCEEEEeecCCCceecCCCccccCCCCCCCCccceeeccCCCCCc
Q 048004 782 GLHNLTNLHSLEIHGNTKIWKSMIEWGRGFHRFSSLRELKISRCDDDMVSFPPEDIRLGTTLPLPASLTSLEIGYFPNLE 861 (943)
Q Consensus 782 ~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~ 861 (943)
.+.++++|+.|++++|.... ..+..+..+++|++|+|++| ...+.+|... ..+++|+.|++++|...+
T Consensus 494 ~~~~l~~L~~L~Ls~N~l~~----~~p~~~~~l~~L~~L~Ls~N-~l~~~~p~~~-------~~l~~L~~L~Ls~N~l~~ 561 (968)
T PLN00113 494 KLGSLSELMQLKLSENKLSG----EIPDELSSCKKLVSLDLSHN-QLSGQIPASF-------SEMPVLSQLDLSQNQLSG 561 (968)
T ss_pred hhhhhhccCEEECcCCccee----eCChHHcCccCCCEEECCCC-cccccCChhH-------hCcccCCEEECCCCcccc
Confidence 55555555555555554221 11222444555555555553 1222233222 344555555555555555
Q ss_pred ccccccccCCCCCeEEEcCCCCCCCCCCCCCCcccceeeecCCcc
Q 048004 862 RLSSSIVDLQNLTSLFLYHCPKLKYFPEKGLPSSLLELIIYRCPL 906 (943)
Q Consensus 862 ~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~i~~c~~ 906 (943)
.+|..+..+++|+.|++++|+....+|..+...++....+.++|.
T Consensus 562 ~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~~~~~~~~~~n~~ 606 (968)
T PLN00113 562 EIPKNLGNVESLVQVNISHNHLHGSLPSTGAFLAINASAVAGNID 606 (968)
T ss_pred cCChhHhcCcccCEEeccCCcceeeCCCcchhcccChhhhcCCcc
Confidence 556555566666666666665555566554444444444555554
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=7.4e-40 Score=405.55 Aligned_cols=516 Identities=19% Similarity=0.201 Sum_probs=356.6
Q ss_pred CceeEEEEEccCcccccccccccCCCCcceeeeecccCCCCCCCCCCcccccc-CCCcccEEEecCcccc-ccCccccCC
Q 048004 122 RNLRHLSYIRGDYDGVQRFGDLYDIQHLRTFLPVMLTNSRPGFLAPSILPKLL-KPQRLRAFSLRGYYIF-ELPDSVGDL 199 (943)
Q Consensus 122 ~~~r~ls~~~~~~~~~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~-~l~~L~~L~L~~~~i~-~lp~~~~~L 199 (943)
.+++.+.+......... ...+..+++|++|.+..+. +...+|..++ .+++||+|+|++|.+. .+|. +.+
T Consensus 69 ~~v~~L~L~~~~i~~~~-~~~~~~l~~L~~L~Ls~n~------~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l 139 (968)
T PLN00113 69 SRVVSIDLSGKNISGKI-SSAIFRLPYIQTINLSNNQ------LSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSI 139 (968)
T ss_pred CcEEEEEecCCCccccC-ChHHhCCCCCCEEECCCCc------cCCcCChHHhccCCCCCEEECcCCccccccCc--ccc
Confidence 35777776554322211 2456778999999876542 3456788888 9999999999999975 4554 568
Q ss_pred CcccEEecCCCCCc-ccchhHhhcccCcEEecCCCcchhhchHhhcccccccccccCCCCccccCCcccCCccccccccc
Q 048004 200 RYLRYLNLCGTKIR-TLPESVNKLYNLHSLLLEDCDRLKKLCADMGNLAKLHHLKNSNTKSLEEMPVGIGKLTSLQTLCN 278 (943)
Q Consensus 200 ~~L~~L~L~~n~i~-~lp~~i~~L~~L~~L~L~~~~~l~~lp~~~~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~ 278 (943)
++|++|+|++|.++ .+|..++++++|++|++++|.....+|..++++++|++|++++|.....+|..++++++|++|+.
T Consensus 140 ~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 219 (968)
T PLN00113 140 PNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYL 219 (968)
T ss_pred CCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEEC
Confidence 99999999999997 78999999999999999998777889999999999999999999966788999999999999932
Q ss_pred eeeccCCCCCchhhhcccccCCeeeeccccccCCcccchhhhcCCCCCCCeEEEEeecCCCCCCCcchhcHHhhhccCCC
Q 048004 279 FVVGKGSGSGLRELKLLTHLHGTLNISKLENVKCVGDAMEAQMDGKKNLKELSLKWTCSTDGSSSREAETEMGVLDMLKP 358 (943)
Q Consensus 279 ~~~~~~~~~~l~~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~ 358 (943)
..+ .+ ....+..+.++++|+.|++++|...
T Consensus 220 ~~n------------------------~l------~~~~p~~l~~l~~L~~L~L~~n~l~-------------------- 249 (968)
T PLN00113 220 GYN------------------------NL------SGEIPYEIGGLTSLNHLDLVYNNLT-------------------- 249 (968)
T ss_pred cCC------------------------cc------CCcCChhHhcCCCCCEEECcCceec--------------------
Confidence 211 11 1224455777888888888764211
Q ss_pred CCCcceEEEeccCCCCCCcCcCCCCCCCccEEEEecCCCCCCCC-CCCCCCCCCeeEEccccCeeEeCccccCCCCCccc
Q 048004 359 HTNLEQFCIKGYGGMKFPTWLGDSLFSNLVTLEFEDCGMCTALP-SVGQLPSLKHLTVRGMSRVKRLGSEFCGNDPPCLE 437 (943)
Q Consensus 359 ~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~ 437 (943)
..+|..+.. +++|+.|++++|.+.+.+| .+..+++|+.|++++|.....++..
T Consensus 250 --------------~~~p~~l~~--l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~---------- 303 (968)
T PLN00113 250 --------------GPIPSSLGN--LKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPEL---------- 303 (968)
T ss_pred --------------cccChhHhC--CCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChh----------
Confidence 234555554 7899999999999987777 7889999999999988533222211
Q ss_pred eeecccccccccccccCCcccccCCCcccEEecccCcccccCCCCCCCccceEEeccccCccccCCCCCcccEEEEcCCc
Q 048004 438 TLRFENMREWEDWIPHGSGQRVEGFPKLRELHILRCSKLKGTFPEHLPALEMLVIEGCEELLVSVSSLPALCKLHIGGCK 517 (943)
Q Consensus 438 ~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~~l~~L~~L~l~~~~~l~~~~~~l~~L~~L~l~~~~ 517 (943)
...+++|+.|++++| .+.+.+|. .+..+++|+.|++++|.
T Consensus 304 ---------------------~~~l~~L~~L~l~~n-~~~~~~~~------------------~~~~l~~L~~L~L~~n~ 343 (968)
T PLN00113 304 ---------------------VIQLQNLEILHLFSN-NFTGKIPV------------------ALTSLPRLQVLQLWSNK 343 (968)
T ss_pred ---------------------HcCCCCCcEEECCCC-ccCCcCCh------------------hHhcCCCCCEEECcCCC
Confidence 345788999999884 55555553 45668899999999999
Q ss_pred CeeeeccccCCCCCccEEEEecccccchhhhhhhhhhhccCCccEEeecCCCCcccchhhhhhHHhhhhhcccccccEEE
Q 048004 518 KVVWRRPLKLRLPKLEELEIENMKEQTYIWKSHKELLQDICSLKRLTIDSCPKLQSLVAEEEKDQQQQLCELSCRLEYLT 597 (943)
Q Consensus 518 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~i~~~~~~~~~~l~~L~~L~l~~~~~L~~l~~~~~~~~~~~l~~~~~~L~~L~ 597 (943)
+....+..+..+++|+.|++++|.....+ +..+..++ +|+.|+
T Consensus 344 l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~----p~~~~~~~---------------------------------~L~~L~ 386 (968)
T PLN00113 344 FSGEIPKNLGKHNNLTVLDLSTNNLTGEI----PEGLCSSG---------------------------------NLFKLI 386 (968)
T ss_pred CcCcCChHHhCCCCCcEEECCCCeeEeeC----ChhHhCcC---------------------------------CCCEEE
Confidence 98888888889999999999998765432 12223334 455555
Q ss_pred eecCCCCCCCCccccCccccceEEeccCCCccccCC-ccCCCCccEEEeccCCCCcccccccccCCCCCCCeEEEeecCC
Q 048004 598 LSGCQGLVKLPQSSLSLNSLREIEIYKCSSLVSFPE-VALPSKLKKIEIRECDALKSLPEAWMCGTNSSLEILSIQGCHS 676 (943)
Q Consensus 598 l~~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~ 676 (943)
+++|.....+|..+..+++|+.|++++|...+.+|. +..++.|+.|++++|...+.++..+ ..+++|+.|++++|..
T Consensus 387 l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~--~~l~~L~~L~L~~n~~ 464 (968)
T PLN00113 387 LFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRK--WDMPSLQMLSLARNKF 464 (968)
T ss_pred CcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhh--ccCCCCcEEECcCcee
Confidence 555555555555555666666666666654444442 3445566666666655544444433 3556666666666664
Q ss_pred CccccCccCCCCccEEEeccCCCccccccccccccCCCCCCCeeeeeccCCcccccccCCCCCCcCeEeecCCCCceecC
Q 048004 677 LTYIAGVQLPPSLKRLEIDFCDNLRTLTVEEGIQSSSSSSSSSRSIWTCENLKFLPSGLHNLRQLQEIEIWECENLVSFP 756 (943)
Q Consensus 677 l~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~~~L~~l~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~ 756 (943)
.+.+|......+| +.|+++++.-...+|..+.++++|+.|++++|...+.+|
T Consensus 465 ~~~~p~~~~~~~L----------------------------~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p 516 (968)
T PLN00113 465 FGGLPDSFGSKRL----------------------------ENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIP 516 (968)
T ss_pred eeecCcccccccc----------------------------eEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCC
Confidence 4433322111222 222333332223345566677777788887777777777
Q ss_pred CCCCCCCCcceEeecccCCCCccccccCCCCccceEEecCCCchhhhhhhhccccCCCCCcCEEEEeecCCCceecCC
Q 048004 757 QGGLPCAKLSMLTVYGCERLKALPKGLHNLTNLHSLEIHGNTKIWKSMIEWGRGFHRFSSLRELKISRCDDDMVSFPP 834 (943)
Q Consensus 757 ~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~~~~ 834 (943)
..+..+++|++|++++|.+.+.+|..+..+++|+.|++++|.... ..|..+..+++|++|++++| .....+|.
T Consensus 517 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~----~~p~~l~~l~~L~~l~ls~N-~l~~~~p~ 589 (968)
T PLN00113 517 DELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSG----EIPKNLGNVESLVQVNISHN-HLHGSLPS 589 (968)
T ss_pred hHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccc----cCChhHhcCcccCEEeccCC-cceeeCCC
Confidence 777777778888888877777777777777778888887776432 23344667777778888774 34455664
No 4
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=6.2e-37 Score=377.23 Aligned_cols=256 Identities=21% Similarity=0.215 Sum_probs=162.6
Q ss_pred CCCcchhhhhcccCCCc-chhhhhhhhccCCCCceeChhhHHHHHHHcCCccCCCCCCcHHHHHHHHHHHHHhCCccccc
Q 048004 2 RCRIIPALAVSYYYLPP-TLKQCFAHCSLLPKDYEFEEEEIILLWCAAGFLDHKEDENPSEDLGRDFFKELCSRSFFQQS 80 (943)
Q Consensus 2 ~~~i~~~L~lSY~~L~~-~lk~cfl~cslfpe~~~i~~~~Li~~wiaeG~i~~~~~~~~~~~~~~~~~~~L~~~~ll~~~ 80 (943)
+.+|+++|++|||+|++ ..|.||+|||+||.+..+ +.|..|+|.+.+.. +..++.|+++||++..
T Consensus 419 ~~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~---~~v~~~l~~~~~~~-----------~~~l~~L~~ksLi~~~ 484 (1153)
T PLN03210 419 DGKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKV---NDIKLLLANSDLDV-----------NIGLKNLVDKSLIHVR 484 (1153)
T ss_pred cHHHHHHHHHhhhccCccchhhhhheehhhcCCCCH---HHHHHHHHhcCCCc-----------hhChHHHHhcCCEEEc
Confidence 45799999999999987 599999999999998754 45888888876542 1238899999999875
Q ss_pred cCCCCceehhhHHHHHHHHhcccce-------EEEeeccc--cccccccCCceeEEEEEccCccccc-ccccccCCCCcc
Q 048004 81 ATDASLFVMHDLINDLARWAAGETY-------FTLEYTSE--VNKQQCFSRNLRHLSYIRGDYDGVQ-RFGDLYDIQHLR 150 (943)
Q Consensus 81 ~~~~~~~~mHdlv~dla~~i~~~~~-------~~~~~~~~--~~~~~~~~~~~r~ls~~~~~~~~~~-~~~~~~~~~~Lr 150 (943)
. ..++|||++||||+++++++. +.+..... ..........++++++.....+... ...+|.++++|+
T Consensus 485 ~---~~~~MHdLl~~~~r~i~~~~~~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~ 561 (1153)
T PLN03210 485 E---DIVEMHSLLQEMGKEIVRAQSNEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDELHIHENAFKGMRNLL 561 (1153)
T ss_pred C---CeEEhhhHHHHHHHHHHHhhcCCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccceeeecHHHHhcCcccc
Confidence 3 469999999999999997653 11111000 0000112234555555433222211 123466677777
Q ss_pred eeeeecccCCCCCCCCCCccccccCC-CcccEEEecCccccccCccccCCCcccEEecCCCCCcccchhHhhcccCcEEe
Q 048004 151 TFLPVMLTNSRPGFLAPSILPKLLKP-QRLRAFSLRGYYIFELPDSVGDLRYLRYLNLCGTKIRTLPESVNKLYNLHSLL 229 (943)
Q Consensus 151 ~L~~~~~~~~~~~~~~~~~~~~~~~l-~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~L~~n~i~~lp~~i~~L~~L~~L~ 229 (943)
.|.+..............+|.++..+ .+||.|.+.++.+..+|..| ...+|++|++++|.++.+|..+..+++|+.|+
T Consensus 562 ~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~ 640 (1153)
T PLN03210 562 FLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSKLEKLWDGVHSLTGLRNID 640 (1153)
T ss_pred EEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcC-CccCCcEEECcCccccccccccccCCCCCEEE
Confidence 77654432111111122334444433 45777777777777777666 35777777777777777777777777777777
Q ss_pred cCCCcchhhchHhhcccccccccccCCCCccccCCcccCCccccccc
Q 048004 230 LEDCDRLKKLCADMGNLAKLHHLKNSNTKSLEEMPVGIGKLTSLQTL 276 (943)
Q Consensus 230 L~~~~~l~~lp~~~~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L 276 (943)
|++|..+..+| .++.+++|++|++++|..+..+|..++.+++|+.|
T Consensus 641 Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L 686 (1153)
T PLN03210 641 LRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDL 686 (1153)
T ss_pred CCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEE
Confidence 77766666666 46667777777777766555555555444444444
No 5
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.95 E-value=5.2e-32 Score=267.00 Aligned_cols=98 Identities=30% Similarity=0.460 Sum_probs=78.7
Q ss_pred CcccEEEecCccccccCccccCCCcccEEecCCCCCcccchhHhhcccCcEEecCCCcchhhchHhhcccccccccccCC
Q 048004 177 QRLRAFSLRGYYIFELPDSVGDLRYLRYLNLCGTKIRTLPESVNKLYNLHSLLLEDCDRLKKLCADMGNLAKLHHLKNSN 256 (943)
Q Consensus 177 ~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~L~~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~~~~L~~L~~L~l~~ 256 (943)
.-+..|+++.|.+..+.+.+.++..|.+|++++|++.++|++|+.+..++.|+.++ +.+..+|..++.+.+|++|+.++
T Consensus 45 v~l~~lils~N~l~~l~~dl~nL~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~-n~ls~lp~~i~s~~~l~~l~~s~ 123 (565)
T KOG0472|consen 45 VDLQKLILSHNDLEVLREDLKNLACLTVLNVHDNKLSQLPAAIGELEALKSLNVSH-NKLSELPEQIGSLISLVKLDCSS 123 (565)
T ss_pred cchhhhhhccCchhhccHhhhcccceeEEEeccchhhhCCHHHHHHHHHHHhhccc-chHhhccHHHhhhhhhhhhhccc
Confidence 45667778888887777777888888888888888888888888888888888888 57788888888888888888888
Q ss_pred CCccccCCcccCCccccccc
Q 048004 257 TKSLEEMPVGIGKLTSLQTL 276 (943)
Q Consensus 257 ~~~~~~~p~~i~~L~~L~~L 276 (943)
|. ...+|++|+.+..|+.|
T Consensus 124 n~-~~el~~~i~~~~~l~dl 142 (565)
T KOG0472|consen 124 NE-LKELPDSIGRLLDLEDL 142 (565)
T ss_pred cc-eeecCchHHHHhhhhhh
Confidence 87 77788888777777766
No 6
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.94 E-value=2.7e-30 Score=254.94 Aligned_cols=247 Identities=26% Similarity=0.322 Sum_probs=164.9
Q ss_pred ccccccCCCcccEEEecCccccccCccccCCCcccEEecCCCCCcccchhHhhcccCcEEecCCCcchhhchHhhccccc
Q 048004 169 ILPKLLKPQRLRAFSLRGYYIFELPDSVGDLRYLRYLNLCGTKIRTLPESVNKLYNLHSLLLEDCDRLKKLCADMGNLAK 248 (943)
Q Consensus 169 ~~~~~~~l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~L~~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~~~~L~~ 248 (943)
+.+++-++..|.||++.+|.+..+|.+++.+..++.|+.++|++.++|++++.+.+|+.|+.++ +...++|++|+.+..
T Consensus 60 l~~dl~nL~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~-n~~~el~~~i~~~~~ 138 (565)
T KOG0472|consen 60 LREDLKNLACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSS-NELKELPDSIGRLLD 138 (565)
T ss_pred ccHhhhcccceeEEEeccchhhhCCHHHHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhccc-cceeecCchHHHHhh
Confidence 3445557888999999999999999999999999999999999999999999999999999999 578888999999999
Q ss_pred ccccccCCCCccccCCcccCCccccccccceeeccCCCCCchhhhcccccCCeeeeccccccCCcccchhhhcCCCCCCC
Q 048004 249 LHHLKNSNTKSLEEMPVGIGKLTSLQTLCNFVVGKGSGSGLRELKLLTHLHGTLNISKLENVKCVGDAMEAQMDGKKNLK 328 (943)
Q Consensus 249 L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~l~~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~ 328 (943)
|+.|+..+|+ +..+|.+++.+.+|..|..-... + .+.++..-+++.|+
T Consensus 139 l~dl~~~~N~-i~slp~~~~~~~~l~~l~~~~n~------------------------l-------~~l~~~~i~m~~L~ 186 (565)
T KOG0472|consen 139 LEDLDATNNQ-ISSLPEDMVNLSKLSKLDLEGNK------------------------L-------KALPENHIAMKRLK 186 (565)
T ss_pred hhhhhccccc-cccCchHHHHHHHHHHhhccccc------------------------h-------hhCCHHHHHHHHHH
Confidence 9999999988 89999999888888777321110 0 00111111123333
Q ss_pred eEEEEeecCCCCCCCcchhcHHhhhccCCCCCCcceEEEeccCCCCCCcCcCCCCCCCccEEEEecCCCCCCCCCCCCCC
Q 048004 329 ELSLKWTCSTDGSSSREAETEMGVLDMLKPHTNLEQFCIKGYGGMKFPTWLGDSLFSNLVTLEFEDCGMCTALPSVGQLP 408 (943)
Q Consensus 329 ~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~ 408 (943)
+|+. ..+....+|+.++. +.+|..|++..|++. .+|.|+++.
T Consensus 187 ~ld~-----------------------------------~~N~L~tlP~~lg~--l~~L~~LyL~~Nki~-~lPef~gcs 228 (565)
T KOG0472|consen 187 HLDC-----------------------------------NSNLLETLPPELGG--LESLELLYLRRNKIR-FLPEFPGCS 228 (565)
T ss_pred hccc-----------------------------------chhhhhcCChhhcc--hhhhHHHHhhhcccc-cCCCCCccH
Confidence 3332 23334455666654 667777777777663 355777777
Q ss_pred CCCeeEEccccCeeEeCccccCCCCCccceeecccccccccccccCCcccccCCCcccEEecccCcccccCCCCC---CC
Q 048004 409 SLKHLTVRGMSRVKRLGSEFCGNDPPCLETLRFENMREWEDWIPHGSGQRVEGFPKLRELHILRCSKLKGTFPEH---LP 485 (943)
Q Consensus 409 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~~---l~ 485 (943)
.|++|++..| .++.++.+. ...++++..|++.+ ++++ ..|.. +.
T Consensus 229 ~L~Elh~g~N-~i~~lpae~------------------------------~~~L~~l~vLDLRd-Nklk-e~Pde~clLr 275 (565)
T KOG0472|consen 229 LLKELHVGEN-QIEMLPAEH------------------------------LKHLNSLLVLDLRD-NKLK-EVPDEICLLR 275 (565)
T ss_pred HHHHHHhccc-HHHhhHHHH------------------------------hcccccceeeeccc-cccc-cCchHHHHhh
Confidence 7777777655 444444332 22355666666666 5665 55532 33
Q ss_pred ccceEEecccc--CccccCCCCCcccEEEEcCCcCee
Q 048004 486 ALEMLVIEGCE--ELLVSVSSLPALCKLHIGGCKKVV 520 (943)
Q Consensus 486 ~L~~L~l~~~~--~l~~~~~~l~~L~~L~l~~~~~~~ 520 (943)
+|+.|++++|. .++..++++ .|+.|.+.+|++.+
T Consensus 276 sL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNPlrT 311 (565)
T KOG0472|consen 276 SLERLDLSNNDISSLPYSLGNL-HLKFLALEGNPLRT 311 (565)
T ss_pred hhhhhcccCCccccCCcccccc-eeeehhhcCCchHH
Confidence 44455555554 333455555 56666666666544
No 7
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.93 E-value=1.9e-28 Score=267.17 Aligned_cols=80 Identities=21% Similarity=0.260 Sum_probs=52.8
Q ss_pred ccccEEEeecCCCCCCCCccccCccccceEEeccCCCccccCC-ccCCCCccEEEeccCCCCcccccccccCCCCCCCeE
Q 048004 591 CRLEYLTLSGCQGLVKLPQSSLSLNSLREIEIYKCSSLVSFPE-VALPSKLKKIEIRECDALKSLPEAWMCGTNSSLEIL 669 (943)
Q Consensus 591 ~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L 669 (943)
.+|++++++.+. +..+|.++..+.+|+.+++.+|.. ..+|. +...++|+.|.+..| .++.+|... ....+|++|
T Consensus 241 ~nl~~~dis~n~-l~~lp~wi~~~~nle~l~~n~N~l-~~lp~ri~~~~~L~~l~~~~n-el~yip~~l--e~~~sL~tL 315 (1081)
T KOG0618|consen 241 LNLQYLDISHNN-LSNLPEWIGACANLEALNANHNRL-VALPLRISRITSLVSLSAAYN-ELEYIPPFL--EGLKSLRTL 315 (1081)
T ss_pred ccceeeecchhh-hhcchHHHHhcccceEecccchhH-HhhHHHHhhhhhHHHHHhhhh-hhhhCCCcc--cccceeeee
Confidence 467777777765 345667777788888888777743 55553 444667777777763 455565543 456778888
Q ss_pred EEeecC
Q 048004 670 SIQGCH 675 (943)
Q Consensus 670 ~l~~~~ 675 (943)
++..|.
T Consensus 316 dL~~N~ 321 (1081)
T KOG0618|consen 316 DLQSNN 321 (1081)
T ss_pred eehhcc
Confidence 887766
No 8
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.93 E-value=7.3e-27 Score=241.35 Aligned_cols=85 Identities=18% Similarity=0.252 Sum_probs=68.0
Q ss_pred cccEEEecCcccccc-CccccCCCcccEEecCCCCCcccchhHhhcccCcEEecCCCcchhhc-hHhhcccccccccccC
Q 048004 178 RLRAFSLRGYYIFEL-PDSVGDLRYLRYLNLCGTKIRTLPESVNKLYNLHSLLLEDCDRLKKL-CADMGNLAKLHHLKNS 255 (943)
Q Consensus 178 ~L~~L~L~~~~i~~l-p~~~~~L~~L~~L~L~~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~l-p~~~~~L~~L~~L~l~ 255 (943)
.-++||+++|.+..+ +..|.++++|+.+++.+|.++.+|...+...+|+.|+|.+| .+..+ ..++..++.||.|||+
T Consensus 79 ~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N-~I~sv~se~L~~l~alrslDLS 157 (873)
T KOG4194|consen 79 QTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHN-LISSVTSEELSALPALRSLDLS 157 (873)
T ss_pred ceeeeeccccccccCcHHHHhcCCcceeeeeccchhhhcccccccccceeEEeeecc-ccccccHHHHHhHhhhhhhhhh
Confidence 457789999988877 46678899999999999999999887777888999999884 55544 4568888899999998
Q ss_pred CCCccccCC
Q 048004 256 NTKSLEEMP 264 (943)
Q Consensus 256 ~~~~~~~~p 264 (943)
.|. +..+|
T Consensus 158 rN~-is~i~ 165 (873)
T KOG4194|consen 158 RNL-ISEIP 165 (873)
T ss_pred hch-hhccc
Confidence 887 66655
No 9
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.93 E-value=1.5e-27 Score=260.33 Aligned_cols=100 Identities=32% Similarity=0.430 Sum_probs=90.7
Q ss_pred CCCcccEEEecCccccccCccccCCCcccEEecCCCCCcccchhHhhcccCcEEecCCCcchhhchHhhccccccccccc
Q 048004 175 KPQRLRAFSLRGYYIFELPDSVGDLRYLRYLNLCGTKIRTLPESVNKLYNLHSLLLEDCDRLKKLCADMGNLAKLHHLKN 254 (943)
Q Consensus 175 ~l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~L~~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~~~~L~~L~~L~l 254 (943)
+.-+|++||+++|.+...|..+..+.+|+.|+++.|.|...|.+++++.+|++|.|.+ +.+..+|.++..+++|+.|++
T Consensus 43 ~~v~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~-n~l~~lP~~~~~lknl~~Ldl 121 (1081)
T KOG0618|consen 43 KRVKLKSLDLSNNQISSFPIQITLLSHLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKN-NRLQSLPASISELKNLQYLDL 121 (1081)
T ss_pred heeeeEEeeccccccccCCchhhhHHHHhhcccchhhHhhCchhhhhhhcchhheecc-chhhcCchhHHhhhccccccc
Confidence 3445999999999999999999999999999999999999999999999999999997 789999999999999999999
Q ss_pred CCCCccccCCcccCCccccccc
Q 048004 255 SNTKSLEEMPVGIGKLTSLQTL 276 (943)
Q Consensus 255 ~~~~~~~~~p~~i~~L~~L~~L 276 (943)
+.|. ...+|.-+..++.+..+
T Consensus 122 S~N~-f~~~Pl~i~~lt~~~~~ 142 (1081)
T KOG0618|consen 122 SFNH-FGPIPLVIEVLTAEEEL 142 (1081)
T ss_pred chhc-cCCCchhHHhhhHHHHH
Confidence 9998 88888888777777666
No 10
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.92 E-value=2.4e-26 Score=237.56 Aligned_cols=224 Identities=17% Similarity=0.234 Sum_probs=108.4
Q ss_pred CCccEEEEecCCCCCCCC-CCCCCCCCCeeEEccccCeeEeCccccCCCCCccceeecccccccccccccCCcccccCCC
Q 048004 385 SNLVTLEFEDCGMCTALP-SVGQLPSLKHLTVRGMSRVKRLGSEFCGNDPPCLETLRFENMREWEDWIPHGSGQRVEGFP 463 (943)
Q Consensus 385 ~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~ 463 (943)
+..+.|++++|.+...-+ .|.++|+|+.+++..| .++.++. ++....+++.|.+.+... ... .++....+|
T Consensus 78 ~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N-~Lt~IP~--f~~~sghl~~L~L~~N~I-~sv----~se~L~~l~ 149 (873)
T KOG4194|consen 78 SQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKN-ELTRIPR--FGHESGHLEKLDLRHNLI-SSV----TSEELSALP 149 (873)
T ss_pred cceeeeeccccccccCcHHHHhcCCcceeeeeccc-hhhhccc--ccccccceeEEeeecccc-ccc----cHHHHHhHh
Confidence 556778888888765544 6778888888888776 4444442 111222344443333110 000 001123344
Q ss_pred cccEEecccCcccccCCCCCCCccceEEeccccCccccCCCCCcccEEEEcCCcCeeeeccccCCCCCccEEEEeccccc
Q 048004 464 KLRELHILRCSKLKGTFPEHLPALEMLVIEGCEELLVSVSSLPALCKLHIGGCKKVVWRRPLKLRLPKLEELEIENMKEQ 543 (943)
Q Consensus 464 ~L~~L~l~~c~~l~~~~p~~l~~L~~L~l~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 543 (943)
.|+.|+++. +.++ .+|. ..++.-+++++|++++|.+..+....|.++.+|..|.|+.|.+.
T Consensus 150 alrslDLSr-N~is-~i~~-----------------~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrit 210 (873)
T KOG4194|consen 150 ALRSLDLSR-NLIS-EIPK-----------------PSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRIT 210 (873)
T ss_pred hhhhhhhhh-chhh-cccC-----------------CCCCCCCCceEEeeccccccccccccccccchheeeecccCccc
Confidence 444444444 2333 3321 13444456666666666666666666666666666666655443
Q ss_pred chhhhhhhhhhhccCCccEEeecCCCCcccchhhhhhHHhhhhhcccccccEEEeecCCCCCCCCccccCccccceEEec
Q 048004 544 TYIWKSHKELLQDICSLKRLTIDSCPKLQSLVAEEEKDQQQQLCELSCRLEYLTLSGCQGLVKLPQSSLSLNSLREIEIY 623 (943)
Q Consensus 544 ~~i~~~~~~~~~~l~~L~~L~l~~~~~L~~l~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~ 623 (943)
. .+...+..++. |+.|++..|..-..-...|.++++|+.|.+.
T Consensus 211 t----Lp~r~Fk~L~~---------------------------------L~~LdLnrN~irive~ltFqgL~Sl~nlklq 253 (873)
T KOG4194|consen 211 T----LPQRSFKRLPK---------------------------------LESLDLNRNRIRIVEGLTFQGLPSLQNLKLQ 253 (873)
T ss_pred c----cCHHHhhhcch---------------------------------hhhhhccccceeeehhhhhcCchhhhhhhhh
Confidence 2 23333333333 3333333333222112345556666666665
Q ss_pred cCCCccccCC--ccCCCCccEEEeccCCCCcccccccccCCCCCCCeEEEeecC
Q 048004 624 KCSSLVSFPE--VALPSKLKKIEIRECDALKSLPEAWMCGTNSSLEILSIQGCH 675 (943)
Q Consensus 624 ~~~~l~~~~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~ 675 (943)
.|. +..+.. +-.+.++++|++.. +.+..+..+++ -++++|+.|++++|.
T Consensus 254 rN~-I~kL~DG~Fy~l~kme~l~L~~-N~l~~vn~g~l-fgLt~L~~L~lS~Na 304 (873)
T KOG4194|consen 254 RND-ISKLDDGAFYGLEKMEHLNLET-NRLQAVNEGWL-FGLTSLEQLDLSYNA 304 (873)
T ss_pred hcC-cccccCcceeeecccceeeccc-chhhhhhcccc-cccchhhhhccchhh
Confidence 552 222221 22245555555555 23334433333 455556666666554
No 11
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.91 E-value=2.1e-23 Score=257.71 Aligned_cols=344 Identities=22% Similarity=0.293 Sum_probs=208.6
Q ss_pred cCCCCCcccEEEEcCCcC------eeeeccccCCC-CCccEEEEecccccchhhhhhhhhhhccCCccEEeecCCCCccc
Q 048004 501 SVSSLPALCKLHIGGCKK------VVWRRPLKLRL-PKLEELEIENMKEQTYIWKSHKELLQDICSLKRLTIDSCPKLQS 573 (943)
Q Consensus 501 ~~~~l~~L~~L~l~~~~~------~~~~~~~~~~l-~~L~~L~l~~~~~~~~i~~~~~~~~~~l~~L~~L~l~~~~~L~~ 573 (943)
.+..+++|+.|.+..+.. ....+..+..+ ++|+.|.+.+++.... +.. + ...+|+.|++.++ +++.
T Consensus 553 aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~l----P~~-f-~~~~L~~L~L~~s-~l~~ 625 (1153)
T PLN03210 553 AFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCM----PSN-F-RPENLVKLQMQGS-KLEK 625 (1153)
T ss_pred HHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCC----CCc-C-CccCCcEEECcCc-cccc
Confidence 456678888887765431 11223333333 3577777776653221 111 1 2456777777665 3555
Q ss_pred chhhhhhHHhhhhhcccccccEEEeecCCCCCCCCccccCccccceEEeccCCCccccCC-ccCCCCccEEEeccCCCCc
Q 048004 574 LVAEEEKDQQQQLCELSCRLEYLTLSGCQGLVKLPQSSLSLNSLREIEIYKCSSLVSFPE-VALPSKLKKIEIRECDALK 652 (943)
Q Consensus 574 l~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~~~L~~L~l~~~~~l~ 652 (943)
+|.... ..++|+.|++++|..++.+|. +..+++|+.|++++|..+..+|. +..+++|+.|++++|+.++
T Consensus 626 L~~~~~---------~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~ 695 (1153)
T PLN03210 626 LWDGVH---------SLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLE 695 (1153)
T ss_pred cccccc---------cCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcC
Confidence 543210 125677777777666666663 55667777777777766666663 4556677777777777777
Q ss_pred ccccccccCCCCCCCeEEEeecCCCccccCccCCCCccEEEeccCCCccccccccccccCCCCCCCeeeeeccCCcc---
Q 048004 653 SLPEAWMCGTNSSLEILSIQGCHSLTYIAGVQLPPSLKRLEIDFCDNLRTLTVEEGIQSSSSSSSSSRSIWTCENLK--- 729 (943)
Q Consensus 653 ~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~~~L~~l~l~~~~~l~--- 729 (943)
.+|... ++++|+.|++++|..++.+|. .+.+|+.|+++++. ++.++.. ..+++|+.|.+.++...+
T Consensus 696 ~Lp~~i---~l~sL~~L~Lsgc~~L~~~p~--~~~nL~~L~L~~n~-i~~lP~~-----~~l~~L~~L~l~~~~~~~l~~ 764 (1153)
T PLN03210 696 ILPTGI---NLKSLYRLNLSGCSRLKSFPD--ISTNISWLDLDETA-IEEFPSN-----LRLENLDELILCEMKSEKLWE 764 (1153)
T ss_pred ccCCcC---CCCCCCEEeCCCCCCcccccc--ccCCcCeeecCCCc-ccccccc-----ccccccccccccccchhhccc
Confidence 766542 566777777777766665552 34456666665542 3333211 124455556555543211
Q ss_pred ---cc-cccCCCCCCcCeEeecCCCCceecCCCCCCCCCcceEeecccCCCCccccccCCCCccceEEecCCCchhhhhh
Q 048004 730 ---FL-PSGLHNLRQLQEIEIWECENLVSFPQGGLPCAKLSMLTVYGCERLKALPKGLHNLTNLHSLEIHGNTKIWKSMI 805 (943)
Q Consensus 730 ---~l-p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~ 805 (943)
.+ +......++|+.|++++|+..+.+|..+..+++|+.|++++|..++.+|..+ .+++|+.|++++|..+... +
T Consensus 765 ~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~-p 842 (1153)
T PLN03210 765 RVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTF-P 842 (1153)
T ss_pred cccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccccc-c
Confidence 11 1112234677777777777777777777777777778777777777777665 6777777777777654321 1
Q ss_pred hhccccCCCCCcCEEEEeecCCCceecCCCccccCCCCCCCCccceeeccCCCCCcccccccccCCCCCeEEEcCCCCCC
Q 048004 806 EWGRGFHRFSSLRELKISRCDDDMVSFPPEDIRLGTTLPLPASLTSLEIGYFPNLERLSSSIVDLQNLTSLFLYHCPKLK 885 (943)
Q Consensus 806 ~~~~~~~~l~~L~~L~ls~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~ 885 (943)
...++|++|++++| .+..+|... ..+++|+.|++++|++++.+|..+..+++|+.+++++|+.++
T Consensus 843 ------~~~~nL~~L~Ls~n--~i~~iP~si-------~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~ 907 (1153)
T PLN03210 843 ------DISTNISDLNLSRT--GIEEVPWWI-------EKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALT 907 (1153)
T ss_pred ------ccccccCEeECCCC--CCccChHHH-------hcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCcccc
Confidence 12356777777776 555666543 467777788888877777777777777777777888887777
Q ss_pred CCCC
Q 048004 886 YFPE 889 (943)
Q Consensus 886 ~l~~ 889 (943)
.++-
T Consensus 908 ~~~l 911 (1153)
T PLN03210 908 EASW 911 (1153)
T ss_pred cccC
Confidence 5543
No 12
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.89 E-value=1.7e-25 Score=232.69 Aligned_cols=70 Identities=29% Similarity=0.419 Sum_probs=48.6
Q ss_pred cccccCCCCCCcCeEeecCCCCceecCCCCCCCCCcceEeecccCCCCccccccCCCCccceEEecCCCchh
Q 048004 730 FLPSGLHNLRQLQEIEIWECENLVSFPQGGLPCAKLSMLTVYGCERLKALPKGLHNLTNLHSLEIHGNTKIW 801 (943)
Q Consensus 730 ~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~ 801 (943)
.||++++.+.+|+.+...+| .++..|+++..|++|+.|.++.|.+ -.+|..+.-++.|+.||+..|+.+.
T Consensus 307 GiPSGIGKL~~Levf~aanN-~LElVPEglcRC~kL~kL~L~~NrL-iTLPeaIHlL~~l~vLDlreNpnLV 376 (1255)
T KOG0444|consen 307 GIPSGIGKLIQLEVFHAANN-KLELVPEGLCRCVKLQKLKLDHNRL-ITLPEAIHLLPDLKVLDLRENPNLV 376 (1255)
T ss_pred CCccchhhhhhhHHHHhhcc-ccccCchhhhhhHHHHHhcccccce-eechhhhhhcCCcceeeccCCcCcc
Confidence 35677777777777777655 6677777777777777777777654 4456777777777777777777554
No 13
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.87 E-value=1.7e-24 Score=225.19 Aligned_cols=370 Identities=21% Similarity=0.296 Sum_probs=218.2
Q ss_pred CCcccEEEecCcccc--ccCccccCCCcccEEecCCCCCcccchhHhhcccCcEEecCCCcchhhchHhhcccccccccc
Q 048004 176 PQRLRAFSLRGYYIF--ELPDSVGDLRYLRYLNLCGTKIRTLPESVNKLYNLHSLLLEDCDRLKKLCADMGNLAKLHHLK 253 (943)
Q Consensus 176 l~~L~~L~L~~~~i~--~lp~~~~~L~~L~~L~L~~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~~~~L~~L~~L~ 253 (943)
++..|-.|+++|.++ .+|.+...+++++.|.|..+++..+|++++.|.+|++|.+++ +.+..+-.+++.|+.||.++
T Consensus 6 LpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~H-N~L~~vhGELs~Lp~LRsv~ 84 (1255)
T KOG0444|consen 6 LPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAH-NQLISVHGELSDLPRLRSVI 84 (1255)
T ss_pred cceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhhhChHHHHHHhhhhhhhhhh-hhhHhhhhhhccchhhHHHh
Confidence 345666778888764 578888888888888888888888888888888888888888 45666667788888888888
Q ss_pred cCCCCc-cccCCcccCCccccccccceeeccCCCCCchhhhcccccCCeeeeccccccCCcccchhhhcCCCCCCCeEEE
Q 048004 254 NSNTKS-LEEMPVGIGKLTSLQTLCNFVVGKGSGSGLRELKLLTHLHGTLNISKLENVKCVGDAMEAQMDGKKNLKELSL 332 (943)
Q Consensus 254 l~~~~~-~~~~p~~i~~L~~L~~L~~~~~~~~~~~~l~~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l 332 (943)
+.+|+. -..+|..|-+|..|..|+ ++.+.+.. .+..+..-+++-.|++
T Consensus 85 ~R~N~LKnsGiP~diF~l~dLt~lD------------------------LShNqL~E-------vP~~LE~AKn~iVLNL 133 (1255)
T KOG0444|consen 85 VRDNNLKNSGIPTDIFRLKDLTILD------------------------LSHNQLRE-------VPTNLEYAKNSIVLNL 133 (1255)
T ss_pred hhccccccCCCCchhcccccceeee------------------------cchhhhhh-------cchhhhhhcCcEEEEc
Confidence 887762 235677777776666662 22222211 1222333333444444
Q ss_pred EeecCCCCCCCcchhcHHhhhccCCCCCCcceEEEeccCCCCCCcCcCCCCCCCccEEEEecCCCCCCCCCCCCCCCCCe
Q 048004 333 KWTCSTDGSSSREAETEMGVLDMLKPHTNLEQFCIKGYGGMKFPTWLGDSLFSNLVTLEFEDCGMCTALPSVGQLPSLKH 412 (943)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~ 412 (943)
+.+.+..+|..++- .++.|-.|||++|.+....|....+..|+.
T Consensus 134 -----------------------------------S~N~IetIPn~lfi-nLtDLLfLDLS~NrLe~LPPQ~RRL~~Lqt 177 (1255)
T KOG0444|consen 134 -----------------------------------SYNNIETIPNSLFI-NLTDLLFLDLSNNRLEMLPPQIRRLSMLQT 177 (1255)
T ss_pred -----------------------------------ccCccccCCchHHH-hhHhHhhhccccchhhhcCHHHHHHhhhhh
Confidence 44445566665542 256777888888888766667888888888
Q ss_pred eEEccccCeeEeCccccCCCCCccceeecccccccccccccCCcccccCCCcccEEecccCcccccCCCCCCCccceEEe
Q 048004 413 LTVRGMSRVKRLGSEFCGNDPPCLETLRFENMREWEDWIPHGSGQRVEGFPKLRELHILRCSKLKGTFPEHLPALEMLVI 492 (943)
Q Consensus 413 L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~~l~~L~~L~l 492 (943)
|.+++|+..- ..+.. ..++.+|+.|.+++-..-...+|.
T Consensus 178 L~Ls~NPL~h----------------fQLrQ---------------LPsmtsL~vLhms~TqRTl~N~Pt---------- 216 (1255)
T KOG0444|consen 178 LKLSNNPLNH----------------FQLRQ---------------LPSMTSLSVLHMSNTQRTLDNIPT---------- 216 (1255)
T ss_pred hhcCCChhhH----------------HHHhc---------------CccchhhhhhhcccccchhhcCCC----------
Confidence 8888875211 11111 123445555555553322223442
Q ss_pred ccccCccccCCCCCcccEEEEcCCcCeeeeccccCCCCCccEEEEecccccchhhhhhhhhhhccCCccEEeecCCCCcc
Q 048004 493 EGCEELLVSVSSLPALCKLHIGGCKKVVWRRPLKLRLPKLEELEIENMKEQTYIWKSHKELLQDICSLKRLTIDSCPKLQ 572 (943)
Q Consensus 493 ~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~i~~~~~~~~~~l~~L~~L~l~~~~~L~ 572 (943)
++..+.+|..++++.|++...+. ....+++|+.|+|++|.+.+
T Consensus 217 --------sld~l~NL~dvDlS~N~Lp~vPe-cly~l~~LrrLNLS~N~ite---------------------------- 259 (1255)
T KOG0444|consen 217 --------SLDDLHNLRDVDLSENNLPIVPE-CLYKLRNLRRLNLSGNKITE---------------------------- 259 (1255)
T ss_pred --------chhhhhhhhhccccccCCCcchH-HHhhhhhhheeccCcCceee----------------------------
Confidence 33345555555665555433322 22244455555555443321
Q ss_pred cchhhhhhHHhhhhhcccccccEEEeecCCCCCCCCccccCccccceEEeccCCCc-cccCC-ccCCCCccEEEeccCCC
Q 048004 573 SLVAEEEKDQQQQLCELSCRLEYLTLSGCQGLVKLPQSSLSLNSLREIEIYKCSSL-VSFPE-VALPSKLKKIEIRECDA 650 (943)
Q Consensus 573 ~l~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~~l-~~~~~-~~~~~~L~~L~l~~~~~ 650 (943)
+.... ..+ .+|++|+++.|+ ++.+|+.+..+++|+.|.+.+|..- ..+|+ ++.+.+|+.+..++ +.
T Consensus 260 -L~~~~-~~W--------~~lEtLNlSrNQ-Lt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aan-N~ 327 (1255)
T KOG0444|consen 260 -LNMTE-GEW--------ENLETLNLSRNQ-LTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAAN-NK 327 (1255)
T ss_pred -eeccH-HHH--------hhhhhhccccch-hccchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhc-cc
Confidence 10000 011 477888888875 5678888999999999988877321 12332 33344444444444 33
Q ss_pred CcccccccccCCCCCCCeEEEeecCCCccccCccCCCCccEEEeccCCCccccccccccccCCCCCCCeeeeeccCCccc
Q 048004 651 LKSLPEAWMCGTNSSLEILSIQGCHSLTYIAGVQLPPSLKRLEIDFCDNLRTLTVEEGIQSSSSSSSSSRSIWTCENLKF 730 (943)
Q Consensus 651 l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~~~L~~l~l~~~~~l~~ 730 (943)
++-+|.+. ..|..|+.|.++.|. +..
T Consensus 328 LElVPEgl--cRC~kL~kL~L~~Nr----------------------------------------------------LiT 353 (1255)
T KOG0444|consen 328 LELVPEGL--CRCVKLQKLKLDHNR----------------------------------------------------LIT 353 (1255)
T ss_pred cccCchhh--hhhHHHHHhcccccc----------------------------------------------------eee
Confidence 44444443 233444444444333 333
Q ss_pred ccccCCCCCCcCeEeecCCCCceecCC
Q 048004 731 LPSGLHNLRQLQEIEIWECENLVSFPQ 757 (943)
Q Consensus 731 lp~~~~~l~~L~~L~l~~~~~~~~~~~ 757 (943)
+|++++-++.|+.||+..|+++.-.|.
T Consensus 354 LPeaIHlL~~l~vLDlreNpnLVMPPK 380 (1255)
T KOG0444|consen 354 LPEAIHLLPDLKVLDLRENPNLVMPPK 380 (1255)
T ss_pred chhhhhhcCCcceeeccCCcCccCCCC
Confidence 577777788888888888887766654
No 14
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.71 E-value=3.8e-19 Score=176.53 Aligned_cols=103 Identities=23% Similarity=0.321 Sum_probs=85.9
Q ss_pred ccEEEecCccccccC-ccccCCCcccEEecCCCCCccc-chhHhhcccCcEEecCCCcchhhchHh-hcccccccccccC
Q 048004 179 LRAFSLRGYYIFELP-DSVGDLRYLRYLNLCGTKIRTL-PESVNKLYNLHSLLLEDCDRLKKLCAD-MGNLAKLHHLKNS 255 (943)
Q Consensus 179 L~~L~L~~~~i~~lp-~~~~~L~~L~~L~L~~n~i~~l-p~~i~~L~~L~~L~L~~~~~l~~lp~~-~~~L~~L~~L~l~ 255 (943)
-..++|..|+|+.|| .+|+.+++||.||||+|+|+.| |.+|..|..|-.|-+.+++.++.+|.+ |++|..|+.|.+.
T Consensus 69 tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllN 148 (498)
T KOG4237|consen 69 TVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLN 148 (498)
T ss_pred ceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcC
Confidence 456788999999997 5789999999999999999977 688999999988888888889999876 8899999999998
Q ss_pred CCCccccCCcc-cCCccccccccceeec
Q 048004 256 NTKSLEEMPVG-IGKLTSLQTLCNFVVG 282 (943)
Q Consensus 256 ~~~~~~~~p~~-i~~L~~L~~L~~~~~~ 282 (943)
-|+ +..++.+ +..|++|..|..+...
T Consensus 149 an~-i~Cir~~al~dL~~l~lLslyDn~ 175 (498)
T KOG4237|consen 149 ANH-INCIRQDALRDLPSLSLLSLYDNK 175 (498)
T ss_pred hhh-hcchhHHHHHHhhhcchhcccchh
Confidence 888 7777766 8888888888555443
No 15
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.66 E-value=8.3e-18 Score=167.11 Aligned_cols=93 Identities=25% Similarity=0.289 Sum_probs=76.8
Q ss_pred EecCccccccCccccCCCcccEEecCCCCCcccc-hhHhhcccCcEEecCCCcchhhchHhhcccccccccccCCCCccc
Q 048004 183 SLRGYYIFELPDSVGDLRYLRYLNLCGTKIRTLP-ESVNKLYNLHSLLLEDCDRLKKLCADMGNLAKLHHLKNSNTKSLE 261 (943)
Q Consensus 183 ~L~~~~i~~lp~~~~~L~~L~~L~L~~n~i~~lp-~~i~~L~~L~~L~L~~~~~l~~lp~~~~~L~~L~~L~l~~~~~~~ 261 (943)
+-++-.++++|..+. ..-..++|..|+|+.|| .+|+.+++|+.|||++|+....-|..|.+|.+|..|-+.+++.++
T Consensus 52 dCr~~GL~eVP~~LP--~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~ 129 (498)
T KOG4237|consen 52 DCRGKGLTEVPANLP--PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT 129 (498)
T ss_pred EccCCCcccCcccCC--CcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh
Confidence 445556778887664 45677899999999999 668999999999999965555559999999999888887744599
Q ss_pred cCCcc-cCCcccccccc
Q 048004 262 EMPVG-IGKLTSLQTLC 277 (943)
Q Consensus 262 ~~p~~-i~~L~~L~~L~ 277 (943)
.+|.+ |+.|..|+-|.
T Consensus 130 ~l~k~~F~gL~slqrLl 146 (498)
T KOG4237|consen 130 DLPKGAFGGLSSLQRLL 146 (498)
T ss_pred hhhhhHhhhHHHHHHHh
Confidence 99998 99999999883
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.58 E-value=1.9e-14 Score=164.48 Aligned_cols=256 Identities=29% Similarity=0.338 Sum_probs=172.3
Q ss_pred CccEEeecCCCCcccchhhhhhHHhhhhhcccccccEEEeecCCCCCCCCccccCccccceEEeccCCCccccCCccCCC
Q 048004 559 SLKRLTIDSCPKLQSLVAEEEKDQQQQLCELSCRLEYLTLSGCQGLVKLPQSSLSLNSLREIEIYKCSSLVSFPEVALPS 638 (943)
Q Consensus 559 ~L~~L~l~~~~~L~~l~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~ 638 (943)
.-..|+++++ .|+.++.. ++++|+.|++.+|. ++.+|.. .++|++|++++| .++.+|. .++
T Consensus 202 ~~~~LdLs~~-~LtsLP~~-----------l~~~L~~L~L~~N~-Lt~LP~l---p~~Lk~LdLs~N-~LtsLP~--lp~ 262 (788)
T PRK15387 202 GNAVLNVGES-GLTTLPDC-----------LPAHITTLVIPDNN-LTSLPAL---PPELRTLEVSGN-QLTSLPV--LPP 262 (788)
T ss_pred CCcEEEcCCC-CCCcCCcc-----------hhcCCCEEEccCCc-CCCCCCC---CCCCcEEEecCC-ccCcccC--ccc
Confidence 3566777777 66665542 12578888888875 4456642 578889999887 6666764 467
Q ss_pred CccEEEeccCCCCcccccccccCCCCCCCeEEEeecCCCccccCccCCCCccEEEeccCCCccccccccccccCCCCCCC
Q 048004 639 KLKKIEIRECDALKSLPEAWMCGTNSSLEILSIQGCHSLTYIAGVQLPPSLKRLEIDFCDNLRTLTVEEGIQSSSSSSSS 718 (943)
Q Consensus 639 ~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~~~L~ 718 (943)
+|+.|++++|. +..+|.. .++|+.|++++|. ++.+|. .+++|+.|+++++ +++.++ ..+.+|+
T Consensus 263 sL~~L~Ls~N~-L~~Lp~l-----p~~L~~L~Ls~N~-Lt~LP~--~p~~L~~LdLS~N-~L~~Lp-------~lp~~L~ 325 (788)
T PRK15387 263 GLLELSIFSNP-LTHLPAL-----PSGLCKLWIFGNQ-LTSLPV--LPPGLQELSVSDN-QLASLP-------ALPSELC 325 (788)
T ss_pred ccceeeccCCc-hhhhhhc-----hhhcCEEECcCCc-cccccc--cccccceeECCCC-ccccCC-------CCccccc
Confidence 88888888864 5566642 2578888888886 555553 4567888887774 455443 2345677
Q ss_pred eeeeeccCCcccccccCCCCCCcCeEeecCCCCceecCCCCCCCCCcceEeecccCCCCccccccCCCCccceEEecCCC
Q 048004 719 SRSIWTCENLKFLPSGLHNLRQLQEIEIWECENLVSFPQGGLPCAKLSMLTVYGCERLKALPKGLHNLTNLHSLEIHGNT 798 (943)
Q Consensus 719 ~l~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~ 798 (943)
.|.++++ .++.+|.. ..+|+.|++++|. +..+|.. .++|+.|++++|.+. .+|.. ..+|+.|++++|.
T Consensus 326 ~L~Ls~N-~L~~LP~l---p~~Lq~LdLS~N~-Ls~LP~l---p~~L~~L~Ls~N~L~-~LP~l---~~~L~~LdLs~N~ 393 (788)
T PRK15387 326 KLWAYNN-QLTSLPTL---PSGLQELSVSDNQ-LASLPTL---PSELYKLWAYNNRLT-SLPAL---PSGLKELIVSGNR 393 (788)
T ss_pred ccccccC-cccccccc---ccccceEecCCCc-cCCCCCC---Ccccceehhhccccc-cCccc---ccccceEEecCCc
Confidence 7777764 45566642 2478888888874 4456643 247888888887654 46643 3568888888886
Q ss_pred chhhhhhhhccccCCCCCcCEEEEeecCCCceecCCCccccCCCCCCCCccceeeccCCCCCcccccccccCCCCCeEEE
Q 048004 799 KIWKSMIEWGRGFHRFSSLRELKISRCDDDMVSFPPEDIRLGTTLPLPASLTSLEIGYFPNLERLSSSIVDLQNLTSLFL 878 (943)
Q Consensus 799 ~~~~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l 878 (943)
... ++. ..++|+.|++++| .+..+|. .+.+|+.|++++| .++.+|..+.++++|+.|++
T Consensus 394 Lt~-----LP~---l~s~L~~LdLS~N--~LssIP~----------l~~~L~~L~Ls~N-qLt~LP~sl~~L~~L~~LdL 452 (788)
T PRK15387 394 LTS-----LPV---LPSELKELMVSGN--RLTSLPM----------LPSGLLSLSVYRN-QLTRLPESLIHLSSETTVNL 452 (788)
T ss_pred ccC-----CCC---cccCCCEEEccCC--cCCCCCc----------chhhhhhhhhccC-cccccChHHhhccCCCeEEC
Confidence 432 111 1357888888887 5666663 3456788888884 57788888888888888888
Q ss_pred cCCCC
Q 048004 879 YHCPK 883 (943)
Q Consensus 879 ~~c~~ 883 (943)
++++-
T Consensus 453 s~N~L 457 (788)
T PRK15387 453 EGNPL 457 (788)
T ss_pred CCCCC
Confidence 88753
No 17
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.57 E-value=2.7e-14 Score=163.32 Aligned_cols=219 Identities=28% Similarity=0.294 Sum_probs=111.6
Q ss_pred ccccEEEeecCCCCCCCCccccCccccceEEeccCCCccccCCccCCCCccEEEeccCCCCcccccccccCCCCCCCeEE
Q 048004 591 CRLEYLTLSGCQGLVKLPQSSLSLNSLREIEIYKCSSLVSFPEVALPSKLKKIEIRECDALKSLPEAWMCGTNSSLEILS 670 (943)
Q Consensus 591 ~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~ 670 (943)
++|++|++++|. ++.+|.. .++|+.|++++| .+..+|. .+++|+.|++++| .++.+|. ..++|+.|+
T Consensus 242 ~~Lk~LdLs~N~-LtsLP~l---p~sL~~L~Ls~N-~L~~Lp~--lp~~L~~L~Ls~N-~Lt~LP~-----~p~~L~~Ld 308 (788)
T PRK15387 242 PELRTLEVSGNQ-LTSLPVL---PPGLLELSIFSN-PLTHLPA--LPSGLCKLWIFGN-QLTSLPV-----LPPGLQELS 308 (788)
T ss_pred CCCcEEEecCCc-cCcccCc---ccccceeeccCC-chhhhhh--chhhcCEEECcCC-ccccccc-----cccccceeE
Confidence 566666666653 3344432 345666666665 3444443 3455666666664 3444543 225566666
Q ss_pred EeecCCCccccCccCCCCccEEEeccCCCccccccccccccCCCCCCCeeeeeccCCcccccccCCCCCCcCeEeecCCC
Q 048004 671 IQGCHSLTYIAGVQLPPSLKRLEIDFCDNLRTLTVEEGIQSSSSSSSSSRSIWTCENLKFLPSGLHNLRQLQEIEIWECE 750 (943)
Q Consensus 671 l~~~~~l~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~~~L~~l~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~ 750 (943)
+++|. ++.++. .|.+|+.|.+.++ +++.++ ..+.+|+.|++++ ++++.+|.. .++|+.|++++|.
T Consensus 309 LS~N~-L~~Lp~--lp~~L~~L~Ls~N-~L~~LP-------~lp~~Lq~LdLS~-N~Ls~LP~l---p~~L~~L~Ls~N~ 373 (788)
T PRK15387 309 VSDNQ-LASLPA--LPSELCKLWAYNN-QLTSLP-------TLPSGLQELSVSD-NQLASLPTL---PSELYKLWAYNNR 373 (788)
T ss_pred CCCCc-cccCCC--CcccccccccccC-cccccc-------ccccccceEecCC-CccCCCCCC---Ccccceehhhccc
Confidence 66664 333432 3445555555442 233222 1234566666655 345555543 2455566666553
Q ss_pred CceecCCCCCCCCCcceEeecccCCCCccccccCCCCccceEEecCCCchhhhhhhhccccCCCCCcCEEEEeecCCCce
Q 048004 751 NLVSFPQGGLPCAKLSMLTVYGCERLKALPKGLHNLTNLHSLEIHGNTKIWKSMIEWGRGFHRFSSLRELKISRCDDDMV 830 (943)
Q Consensus 751 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~ls~n~~~~~ 830 (943)
+..+|... ++|+.|++++|.+. .+|.. .++|+.|++++|.... .+. ...+|+.|++++| .+.
T Consensus 374 -L~~LP~l~---~~L~~LdLs~N~Lt-~LP~l---~s~L~~LdLS~N~Lss--IP~------l~~~L~~L~Ls~N--qLt 435 (788)
T PRK15387 374 -LTSLPALP---SGLKELIVSGNRLT-SLPVL---PSELKELMVSGNRLTS--LPM------LPSGLLSLSVYRN--QLT 435 (788)
T ss_pred -cccCcccc---cccceEEecCCccc-CCCCc---ccCCCEEEccCCcCCC--CCc------chhhhhhhhhccC--ccc
Confidence 33455321 35666666666543 34432 2456666666665322 111 1234566666665 455
Q ss_pred ecCCCccccCCCCCCCCccceeeccCCCCCcc
Q 048004 831 SFPPEDIRLGTTLPLPASLTSLEIGYFPNLER 862 (943)
Q Consensus 831 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~ 862 (943)
.+|..+ ..+++|+.|++++|+.-..
T Consensus 436 ~LP~sl-------~~L~~L~~LdLs~N~Ls~~ 460 (788)
T PRK15387 436 RLPESL-------IHLSSETTVNLEGNPLSER 460 (788)
T ss_pred ccChHH-------hhccCCCeEECCCCCCCch
Confidence 566544 3556666666666554333
No 18
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.52 E-value=4.5e-16 Score=136.44 Aligned_cols=106 Identities=25% Similarity=0.389 Sum_probs=83.0
Q ss_pred cccccCCCcccEEEecCccccccCccccCCCcccEEecCCCCCcccchhHhhcccCcEEecCCCcchhhchHhhcccccc
Q 048004 170 LPKLLKPQRLRAFSLRGYYIFELPDSVGDLRYLRYLNLCGTKIRTLPESVNKLYNLHSLLLEDCDRLKKLCADMGNLAKL 249 (943)
Q Consensus 170 ~~~~~~l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~L~~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~~~~L~~L 249 (943)
.+.+|.+.+++.|-|++|+++.+|..|..+.+|++|++++|+|+++|.+|+.+++|++|+++- +.+..+|.+|+.++.|
T Consensus 26 ~~gLf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgm-nrl~~lprgfgs~p~l 104 (264)
T KOG0617|consen 26 LPGLFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGM-NRLNILPRGFGSFPAL 104 (264)
T ss_pred cccccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecch-hhhhcCccccCCCchh
Confidence 445667778888888888888888888888888888888888888888888888888888886 5778888888888888
Q ss_pred cccccCCCCcc-ccCCcccCCccccccc
Q 048004 250 HHLKNSNTKSL-EEMPVGIGKLTSLQTL 276 (943)
Q Consensus 250 ~~L~l~~~~~~-~~~p~~i~~L~~L~~L 276 (943)
++||+.+|+.- ..+|..|.-|+.|+.|
T Consensus 105 evldltynnl~e~~lpgnff~m~tlral 132 (264)
T KOG0617|consen 105 EVLDLTYNNLNENSLPGNFFYMTTLRAL 132 (264)
T ss_pred hhhhccccccccccCCcchhHHHHHHHH
Confidence 88888887732 3455556556655555
No 19
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.49 E-value=4.9e-16 Score=136.22 Aligned_cols=128 Identities=24% Similarity=0.340 Sum_probs=110.6
Q ss_pred ccccCCCCcceeeeecccCCCCCCCCCCccccccCCCcccEEEecCccccccCccccCCCcccEEecCCCCCcccchhHh
Q 048004 141 GDLYDIQHLRTFLPVMLTNSRPGFLAPSILPKLLKPQRLRAFSLRGYYIFELPDSVGDLRYLRYLNLCGTKIRTLPESVN 220 (943)
Q Consensus 141 ~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~L~~n~i~~lp~~i~ 220 (943)
+.+.++++..-|.+.... ...+|+.+..+++|++|++.+|+|+++|.+++.++.||.|++.-|++..+|..|+
T Consensus 27 ~gLf~~s~ITrLtLSHNK-------l~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfg 99 (264)
T KOG0617|consen 27 PGLFNMSNITRLTLSHNK-------LTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFG 99 (264)
T ss_pred ccccchhhhhhhhcccCc-------eeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccC
Confidence 344455555555443321 3467888889999999999999999999999999999999999999999999999
Q ss_pred hcccCcEEecCCCcch-hhchHhhcccccccccccCCCCccccCCcccCCccccccc
Q 048004 221 KLYNLHSLLLEDCDRL-KKLCADMGNLAKLHHLKNSNTKSLEEMPVGIGKLTSLQTL 276 (943)
Q Consensus 221 ~L~~L~~L~L~~~~~l-~~lp~~~~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L 276 (943)
.++.|++|||.+|+.- ..+|..|-.++.|+-|++++|. .+-+|.++++|++||.|
T Consensus 100 s~p~levldltynnl~e~~lpgnff~m~tlralyl~dnd-fe~lp~dvg~lt~lqil 155 (264)
T KOG0617|consen 100 SFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDND-FEILPPDVGKLTNLQIL 155 (264)
T ss_pred CCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCC-cccCChhhhhhcceeEE
Confidence 9999999999996543 5689999999999999999999 89999999999999998
No 20
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.47 E-value=1.3e-13 Score=158.90 Aligned_cols=83 Identities=17% Similarity=0.325 Sum_probs=66.1
Q ss_pred CcccEEEecCccccccCccccCCCcccEEecCCCCCcccchhHhhcccCcEEecCCCcchhhchHhhcccccccccccCC
Q 048004 177 QRLRAFSLRGYYIFELPDSVGDLRYLRYLNLCGTKIRTLPESVNKLYNLHSLLLEDCDRLKKLCADMGNLAKLHHLKNSN 256 (943)
Q Consensus 177 ~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~L~~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~~~~L~~L~~L~l~~ 256 (943)
.+..+|+++++.++.+|..+. .+|+.|+|++|+|+.+|..+. .+|++|++++| .+..+|..+. .+|+.|++++
T Consensus 178 ~~~~~L~L~~~~LtsLP~~Ip--~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N-~LtsLP~~l~--~~L~~L~Ls~ 250 (754)
T PRK15370 178 NNKTELRLKILGLTTIPACIP--EQITTLILDNNELKSLPENLQ--GNIKTLYANSN-QLTSIPATLP--DTIQEMELSI 250 (754)
T ss_pred cCceEEEeCCCCcCcCCcccc--cCCcEEEecCCCCCcCChhhc--cCCCEEECCCC-ccccCChhhh--ccccEEECcC
Confidence 456789999999999987765 589999999999999997765 58999999985 5777887654 4788999998
Q ss_pred CCccccCCccc
Q 048004 257 TKSLEEMPVGI 267 (943)
Q Consensus 257 ~~~~~~~p~~i 267 (943)
|. +..+|..+
T Consensus 251 N~-L~~LP~~l 260 (754)
T PRK15370 251 NR-ITELPERL 260 (754)
T ss_pred Cc-cCcCChhH
Confidence 88 66777654
No 21
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.37 E-value=8.3e-13 Score=152.43 Aligned_cols=90 Identities=16% Similarity=0.300 Sum_probs=73.8
Q ss_pred CcccEEEecCccccccCccccCCCcccEEecCCCCCcccchhHhhcccCcEEecCCCcchhhchHhhcccccccccccCC
Q 048004 177 QRLRAFSLRGYYIFELPDSVGDLRYLRYLNLCGTKIRTLPESVNKLYNLHSLLLEDCDRLKKLCADMGNLAKLHHLKNSN 256 (943)
Q Consensus 177 ~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~L~~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~~~~L~~L~~L~l~~ 256 (943)
+.|+.|++++|.++.+|..+. .+|++|++++|+++.+|..+. .+|+.|++++| .+..+|..+. .+|+.|++++
T Consensus 199 ~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N-~L~~LP~~l~--s~L~~L~Ls~ 271 (754)
T PRK15370 199 EQITTLILDNNELKSLPENLQ--GNIKTLYANSNQLTSIPATLP--DTIQEMELSIN-RITELPERLP--SALQSLDLFH 271 (754)
T ss_pred cCCcEEEecCCCCCcCChhhc--cCCCEEECCCCccccCChhhh--ccccEEECcCC-ccCcCChhHh--CCCCEEECcC
Confidence 478999999999999998765 589999999999999998764 48999999995 5678888765 5899999999
Q ss_pred CCccccCCcccCCccccccc
Q 048004 257 TKSLEEMPVGIGKLTSLQTL 276 (943)
Q Consensus 257 ~~~~~~~p~~i~~L~~L~~L 276 (943)
|. +..+|..+. .+|+.|
T Consensus 272 N~-L~~LP~~l~--~sL~~L 288 (754)
T PRK15370 272 NK-ISCLPENLP--EELRYL 288 (754)
T ss_pred Cc-cCccccccC--CCCcEE
Confidence 88 777886543 245544
No 22
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.30 E-value=2.6e-12 Score=150.76 Aligned_cols=107 Identities=31% Similarity=0.403 Sum_probs=90.4
Q ss_pred CCCcccEEEecCcc--ccccCcc-ccCCCcccEEecCCCC-CcccchhHhhcccCcEEecCCCcchhhchHhhccccccc
Q 048004 175 KPQRLRAFSLRGYY--IFELPDS-VGDLRYLRYLNLCGTK-IRTLPESVNKLYNLHSLLLEDCDRLKKLCADMGNLAKLH 250 (943)
Q Consensus 175 ~l~~L~~L~L~~~~--i~~lp~~-~~~L~~L~~L~L~~n~-i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~~~~L~~L~ 250 (943)
..+.|++|-+.+|. +..++.. |..++.||+|||++|. +.++|++|++|.+||+|++++ +.+..+|.++++|++|.
T Consensus 543 ~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~-t~I~~LP~~l~~Lk~L~ 621 (889)
T KOG4658|consen 543 ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSD-TGISHLPSGLGNLKKLI 621 (889)
T ss_pred CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccC-CCccccchHHHHHHhhh
Confidence 45579999999986 6777654 6789999999999875 779999999999999999999 78899999999999999
Q ss_pred ccccCCCCccccCCcccCCccccccccceeec
Q 048004 251 HLKNSNTKSLEEMPVGIGKLTSLQTLCNFVVG 282 (943)
Q Consensus 251 ~L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~ 282 (943)
+|++..+..+..+|..+..|++||+|..+...
T Consensus 622 ~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 622 YLNLEVTGRLESIPGILLELQSLRVLRLPRSA 653 (889)
T ss_pred eeccccccccccccchhhhcccccEEEeeccc
Confidence 99999988666666557779999999665443
No 23
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.26 E-value=1.3e-12 Score=141.01 Aligned_cols=90 Identities=16% Similarity=0.104 Sum_probs=39.6
Q ss_pred CCCCCCcCeEeecCCCCceecCCCC-----CCCCCcceEeecccCCCC----ccccccCCCCccceEEecCCCchhhhhh
Q 048004 735 LHNLRQLQEIEIWECENLVSFPQGG-----LPCAKLSMLTVYGCERLK----ALPKGLHNLTNLHSLEIHGNTKIWKSMI 805 (943)
Q Consensus 735 ~~~l~~L~~L~l~~~~~~~~~~~~~-----~~l~~L~~L~l~~~~~~~----~~~~~l~~l~~L~~L~l~~n~~~~~~~~ 805 (943)
+..+++|++|++++|+....-...+ ...+.|++|++++|.+.. .+...+..+++|+++++++|........
T Consensus 217 ~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~ 296 (319)
T cd00116 217 LASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQ 296 (319)
T ss_pred hcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHH
Confidence 3445566666666654332111000 012456666666655431 1222334445566666666554433222
Q ss_pred hhccccCCC-CCcCEEEEee
Q 048004 806 EWGRGFHRF-SSLRELKISR 824 (943)
Q Consensus 806 ~~~~~~~~l-~~L~~L~ls~ 824 (943)
.....+... +.|+++++.+
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~ 316 (319)
T cd00116 297 LLAESLLEPGNELESLWVKD 316 (319)
T ss_pred HHHHHHhhcCCchhhcccCC
Confidence 222223333 4555555544
No 24
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.22 E-value=2.4e-12 Score=138.76 Aligned_cols=91 Identities=14% Similarity=0.045 Sum_probs=42.7
Q ss_pred CCCCCCcCeEeecCCCCce----ecCCCCCCCCCcceEeecccCCCCcccccc-----CCCCccceEEecCCCchhhhhh
Q 048004 735 LHNLRQLQEIEIWECENLV----SFPQGGLPCAKLSMLTVYGCERLKALPKGL-----HNLTNLHSLEIHGNTKIWKSMI 805 (943)
Q Consensus 735 ~~~l~~L~~L~l~~~~~~~----~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l-----~~l~~L~~L~l~~n~~~~~~~~ 805 (943)
+..+++|++|++++|...+ .++..+..+++|++|++++|.........+ ...+.|++|++++|........
T Consensus 189 l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~ 268 (319)
T cd00116 189 LKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAK 268 (319)
T ss_pred HHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHH
Confidence 3334566666666664431 122233445566666666665433111111 1235666666666654322222
Q ss_pred hhccccCCCCCcCEEEEeec
Q 048004 806 EWGRGFHRFSSLRELKISRC 825 (943)
Q Consensus 806 ~~~~~~~~l~~L~~L~ls~n 825 (943)
.....+..+++|+++++++|
T Consensus 269 ~l~~~~~~~~~L~~l~l~~N 288 (319)
T cd00116 269 DLAEVLAEKESLLELDLRGN 288 (319)
T ss_pred HHHHHHhcCCCccEEECCCC
Confidence 22222444455666666654
No 25
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.93 E-value=1.1e-10 Score=118.30 Aligned_cols=259 Identities=20% Similarity=0.288 Sum_probs=134.4
Q ss_pred CCCCccEEEEecccccchhhhhhhhhhhccCCccEEeecCCCCcccchhhhhhHHhhhhhcccccccEEEeecCCCCCC-
Q 048004 528 RLPKLEELEIENMKEQTYIWKSHKELLQDICSLKRLTIDSCPKLQSLVAEEEKDQQQQLCELSCRLEYLTLSGCQGLVK- 606 (943)
Q Consensus 528 ~l~~L~~L~l~~~~~~~~i~~~~~~~~~~l~~L~~L~l~~~~~L~~l~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~- 606 (943)
..|+++.|.+.+|..++.. .-..+...++.|+.+++..|..++.... ..+...+++|++|+++.|+....
T Consensus 162 ~CpnIehL~l~gc~~iTd~--s~~sla~~C~~l~~l~L~~c~~iT~~~L-------k~la~gC~kL~~lNlSwc~qi~~~ 232 (483)
T KOG4341|consen 162 NCPNIEHLALYGCKKITDS--SLLSLARYCRKLRHLNLHSCSSITDVSL-------KYLAEGCRKLKYLNLSWCPQISGN 232 (483)
T ss_pred hCCchhhhhhhcceeccHH--HHHHHHHhcchhhhhhhcccchhHHHHH-------HHHHHhhhhHHHhhhccCchhhcC
Confidence 3455555555555544332 1233445667777777777777765433 34445557888888888876552
Q ss_pred -CCccccCccccceEEeccCCCcccc--C-CccCCCCccEEEeccCCCCcccccccccCCCCCCCeEEEeecCCCccccC
Q 048004 607 -LPQSSLSLNSLREIEIYKCSSLVSF--P-EVALPSKLKKIEIRECDALKSLPEAWMCGTNSSLEILSIQGCHSLTYIAG 682 (943)
Q Consensus 607 -l~~~~~~l~~L~~L~l~~~~~l~~~--~-~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~ 682 (943)
+.....++..++.+...+|..+..- - .......+.++++..|..+++.........+..|+.|+.++|..+++.+.
T Consensus 233 gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l 312 (483)
T KOG4341|consen 233 GVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVL 312 (483)
T ss_pred cchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHH
Confidence 3333445666677766676544321 0 12234556666677777666655333334566777777777766554332
Q ss_pred c---cCCCCccEEEeccCCCccccccccccccCCCCCCCeeeeeccCCcccccccCCCCCCcCeEeecCCCCcee--cCC
Q 048004 683 V---QLPPSLKRLEIDFCDNLRTLTVEEGIQSSSSSSSSSRSIWTCENLKFLPSGLHNLRQLQEIEIWECENLVS--FPQ 757 (943)
Q Consensus 683 ~---~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~~~L~~l~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~--~~~ 757 (943)
. .--.+|+.+.+.+|.++....+ ..--.+++.|+.+++.+|..... +..
T Consensus 313 ~aLg~~~~~L~~l~l~~c~~fsd~~f--------------------------t~l~rn~~~Le~l~~e~~~~~~d~tL~s 366 (483)
T KOG4341|consen 313 WALGQHCHNLQVLELSGCQQFSDRGF--------------------------TMLGRNCPHLERLDLEECGLITDGTLAS 366 (483)
T ss_pred HHHhcCCCceEEEeccccchhhhhhh--------------------------hhhhcCChhhhhhcccccceehhhhHhh
Confidence 1 1112344444444433322211 01113466677777766643322 222
Q ss_pred CCCCCCCcceEeecccCCCCcc-----ccccCCCCccceEEecCCCchhhhhhhhccccCCCCCcCEEEEee
Q 048004 758 GGLPCAKLSMLTVYGCERLKAL-----PKGLHNLTNLHSLEIHGNTKIWKSMIEWGRGFHRFSSLRELKISR 824 (943)
Q Consensus 758 ~~~~l~~L~~L~l~~~~~~~~~-----~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~ls~ 824 (943)
...+++.|+.|.+++|...+.- ...-.++..|+.+.+++|+.+....-+. +..+++|+.+++-+
T Consensus 367 ls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~---l~~c~~Leri~l~~ 435 (483)
T KOG4341|consen 367 LSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEH---LSICRNLERIELID 435 (483)
T ss_pred hccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHH---HhhCcccceeeeec
Confidence 2334667777777766554432 1222345566666666666554433221 33344444444444
No 26
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.85 E-value=6.9e-11 Score=119.62 Aligned_cols=182 Identities=19% Similarity=0.254 Sum_probs=94.3
Q ss_pred CccEEEEecCCCCCCCC---CCCCCCCCCeeEEccccCeeEeCccccCCCCCccceeecccccccccccccCCcccccCC
Q 048004 386 NLVTLEFEDCGMCTALP---SVGQLPSLKHLTVRGMSRVKRLGSEFCGNDPPCLETLRFENMREWEDWIPHGSGQRVEGF 462 (943)
Q Consensus 386 ~L~~L~L~~~~~~~~l~---~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~ 462 (943)
.|+.|.+++|.-...-+ ....+|++++|.+.+|..+++..-.-.+..++.|+.+.+..|..++....... ...+
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~l---a~gC 215 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYL---AEGC 215 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHH---HHhh
Confidence 45666666665443332 33567777777777776555443222233467777777777766665433221 3458
Q ss_pred CcccEEecccCccccc----CCCCCCCccceEEeccccCccc-----cCCCCCcccEEEEcCCcCeeeec--cccCCCCC
Q 048004 463 PKLRELHILRCSKLKG----TFPEHLPALEMLVIEGCEELLV-----SVSSLPALCKLHIGGCKKVVWRR--PLKLRLPK 531 (943)
Q Consensus 463 ~~L~~L~l~~c~~l~~----~~p~~l~~L~~L~l~~~~~l~~-----~~~~l~~L~~L~l~~~~~~~~~~--~~~~~l~~ 531 (943)
++|++++++.|+.+++ .+..+...++.+...||..... .-...+-+.++++..|...+... ..-....+
T Consensus 216 ~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~ 295 (483)
T KOG4341|consen 216 RKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHA 295 (483)
T ss_pred hhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhH
Confidence 8888888888887775 2334555566666666664331 11234445555555554332211 11123444
Q ss_pred ccEEEEecccccchhhhhhhhhhhccCCccEEeecCCCCcc
Q 048004 532 LEELEIENMKEQTYIWKSHKELLQDICSLKRLTIDSCPKLQ 572 (943)
Q Consensus 532 L~~L~l~~~~~~~~i~~~~~~~~~~l~~L~~L~l~~~~~L~ 572 (943)
|+.|..+++...... .-.......++|+.+.++.|..++
T Consensus 296 lq~l~~s~~t~~~d~--~l~aLg~~~~~L~~l~l~~c~~fs 334 (483)
T KOG4341|consen 296 LQVLCYSSCTDITDE--VLWALGQHCHNLQVLELSGCQQFS 334 (483)
T ss_pred hhhhcccCCCCCchH--HHHHHhcCCCceEEEeccccchhh
Confidence 555555554443221 111122334455555555554433
No 27
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.81 E-value=3.8e-09 Score=98.78 Aligned_cols=129 Identities=25% Similarity=0.254 Sum_probs=50.0
Q ss_pred ccCCCCcceeeeecccCCCCCCCCCCcccccc-CCCcccEEEecCccccccCccccCCCcccEEecCCCCCcccchhH-h
Q 048004 143 LYDIQHLRTFLPVMLTNSRPGFLAPSILPKLL-KPQRLRAFSLRGYYIFELPDSVGDLRYLRYLNLCGTKIRTLPESV-N 220 (943)
Q Consensus 143 ~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~-~l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~L~~n~i~~lp~~i-~ 220 (943)
..+..++|.|.+.+.. ......+. .+.+|++|++++|.|+.++ .+..+++|++|++++|.|+.+++.+ .
T Consensus 15 ~~n~~~~~~L~L~~n~--------I~~Ie~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~I~~i~~~l~~ 85 (175)
T PF14580_consen 15 YNNPVKLRELNLRGNQ--------ISTIENLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNRISSISEGLDK 85 (175)
T ss_dssp -----------------------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS---S-CHHHHH
T ss_pred cccccccccccccccc--------cccccchhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCCCCccccchHH
Confidence 3344556666554432 12233444 5678888888888888875 5777888888888888888887655 4
Q ss_pred hcccCcEEecCCCcchhhch--HhhcccccccccccCCCCccccCCcc----cCCccccccccceeec
Q 048004 221 KLYNLHSLLLEDCDRLKKLC--ADMGNLAKLHHLKNSNTKSLEEMPVG----IGKLTSLQTLCNFVVG 282 (943)
Q Consensus 221 ~L~~L~~L~L~~~~~l~~lp--~~~~~L~~L~~L~l~~~~~~~~~p~~----i~~L~~L~~L~~~~~~ 282 (943)
.+++|+.|++++| .+..+- ..+..+++|++|++.+|. +...+.. +..+++|+.|+...+.
T Consensus 86 ~lp~L~~L~L~~N-~I~~l~~l~~L~~l~~L~~L~L~~NP-v~~~~~YR~~vi~~lP~Lk~LD~~~V~ 151 (175)
T PF14580_consen 86 NLPNLQELYLSNN-KISDLNELEPLSSLPKLRVLSLEGNP-VCEKKNYRLFVIYKLPSLKVLDGQDVT 151 (175)
T ss_dssp H-TT--EEE-TTS----SCCCCGGGGG-TT--EEE-TT-G-GGGSTTHHHHHHHH-TT-SEETTEETT
T ss_pred hCCcCCEEECcCC-cCCChHHhHHHHcCCCcceeeccCCc-ccchhhHHHHHHHHcChhheeCCEEcc
Confidence 6888888888874 444432 346778888888888887 5554532 6777788877655443
No 28
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.78 E-value=2.2e-10 Score=120.32 Aligned_cols=106 Identities=26% Similarity=0.474 Sum_probs=77.5
Q ss_pred CccccccCCCcccEEEecCccccccCccccCCCcccEEecCCCCCcccchhHhhcccCcEEecCCCcchhhchHhhcccc
Q 048004 168 SILPKLLKPQRLRAFSLRGYYIFELPDSVGDLRYLRYLNLCGTKIRTLPESVNKLYNLHSLLLEDCDRLKKLCADMGNLA 247 (943)
Q Consensus 168 ~~~~~~~~l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~L~~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~~~~L~ 247 (943)
.+|.++..+..|..+.|..|.+..+|.+++++..|.||||+.|++..+|..++.|+ |++|.+++ +++..+|.+++.+.
T Consensus 89 elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sN-Nkl~~lp~~ig~~~ 166 (722)
T KOG0532|consen 89 ELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSN-NKLTSLPEEIGLLP 166 (722)
T ss_pred cCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEec-CccccCCcccccch
Confidence 44555556666777777777777777777777777777777777777777777665 77777776 56777777777777
Q ss_pred cccccccCCCCccccCCcccCCccccccc
Q 048004 248 KLHHLKNSNTKSLEEMPVGIGKLTSLQTL 276 (943)
Q Consensus 248 ~L~~L~l~~~~~~~~~p~~i~~L~~L~~L 276 (943)
.|.+||.+.|. +..+|..++.|.+|+.|
T Consensus 167 tl~~ld~s~ne-i~slpsql~~l~slr~l 194 (722)
T KOG0532|consen 167 TLAHLDVSKNE-IQSLPSQLGYLTSLRDL 194 (722)
T ss_pred hHHHhhhhhhh-hhhchHHhhhHHHHHHH
Confidence 77777777777 77777777777777766
No 29
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.67 E-value=2e-08 Score=111.36 Aligned_cols=102 Identities=31% Similarity=0.464 Sum_probs=91.3
Q ss_pred cCCCcccEEEecCccccccCccccCCC-cccEEecCCCCCcccchhHhhcccCcEEecCCCcchhhchHhhccccccccc
Q 048004 174 LKPQRLRAFSLRGYYIFELPDSVGDLR-YLRYLNLCGTKIRTLPESVNKLYNLHSLLLEDCDRLKKLCADMGNLAKLHHL 252 (943)
Q Consensus 174 ~~l~~L~~L~L~~~~i~~lp~~~~~L~-~L~~L~L~~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~~~~L~~L~~L 252 (943)
...+.++.|++.++.+.++|.....+. +|++|++++|.+..+|..++.+++|+.|++++ +.+..+|...+.+++|+.|
T Consensus 113 ~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~-N~l~~l~~~~~~~~~L~~L 191 (394)
T COG4886 113 LELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSF-NDLSDLPKLLSNLSNLNNL 191 (394)
T ss_pred hcccceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCC-chhhhhhhhhhhhhhhhhe
Confidence 366789999999999999998888885 99999999999999998899999999999999 5788999888899999999
Q ss_pred ccCCCCccccCCcccCCcccccccc
Q 048004 253 KNSNTKSLEEMPVGIGKLTSLQTLC 277 (943)
Q Consensus 253 ~l~~~~~~~~~p~~i~~L~~L~~L~ 277 (943)
++++|. +..+|..++.+..|++|.
T Consensus 192 ~ls~N~-i~~l~~~~~~~~~L~~l~ 215 (394)
T COG4886 192 DLSGNK-ISDLPPEIELLSALEELD 215 (394)
T ss_pred eccCCc-cccCchhhhhhhhhhhhh
Confidence 999999 899998877777777773
No 30
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.67 E-value=1.3e-08 Score=95.25 Aligned_cols=100 Identities=29% Similarity=0.471 Sum_probs=36.4
Q ss_pred CCCcccEEEecCccccccCcccc-CCCcccEEecCCCCCcccchhHhhcccCcEEecCCCcchhhchHhh-ccccccccc
Q 048004 175 KPQRLRAFSLRGYYIFELPDSVG-DLRYLRYLNLCGTKIRTLPESVNKLYNLHSLLLEDCDRLKKLCADM-GNLAKLHHL 252 (943)
Q Consensus 175 ~l~~L~~L~L~~~~i~~lp~~~~-~L~~L~~L~L~~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~~-~~L~~L~~L 252 (943)
+..++|.|+|+||.|+.+. .++ .+.+|+.|+|++|.|+.++ .+..+++|++|++++ +.+..++..+ ..+++|++|
T Consensus 17 n~~~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~-N~I~~i~~~l~~~lp~L~~L 93 (175)
T PF14580_consen 17 NPVKLRELNLRGNQISTIE-NLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSN-NRISSISEGLDKNLPNLQEL 93 (175)
T ss_dssp --------------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--S-S---S-CHHHHHH-TT--EE
T ss_pred ccccccccccccccccccc-chhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCC-CCCCccccchHHhCCcCCEE
Confidence 5567899999999999884 565 6899999999999999995 688999999999999 5777776566 469999999
Q ss_pred ccCCCCccccCCc--ccCCccccccccc
Q 048004 253 KNSNTKSLEEMPV--GIGKLTSLQTLCN 278 (943)
Q Consensus 253 ~l~~~~~~~~~p~--~i~~L~~L~~L~~ 278 (943)
++++|+ +..+-. .++.+++|+.|+.
T Consensus 94 ~L~~N~-I~~l~~l~~L~~l~~L~~L~L 120 (175)
T PF14580_consen 94 YLSNNK-ISDLNELEPLSSLPKLRVLSL 120 (175)
T ss_dssp E-TTS----SCCCCGGGGG-TT--EEE-
T ss_pred ECcCCc-CCChHHhHHHHcCCCcceeec
Confidence 999998 655432 2556666666643
No 31
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.67 E-value=6.5e-09 Score=106.25 Aligned_cols=161 Identities=15% Similarity=0.235 Sum_probs=86.4
Q ss_pred CCCcccEEEEcCCcCeeeec-cccCCCCCccEEEEecccccchhhhhhhhhhhccCCccEEeecCCCCcccchhhhhhHH
Q 048004 504 SLPALCKLHIGGCKKVVWRR-PLKLRLPKLEELEIENMKEQTYIWKSHKELLQDICSLKRLTIDSCPKLQSLVAEEEKDQ 582 (943)
Q Consensus 504 ~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~i~~~~~~~~~~l~~L~~L~l~~~~~L~~l~~~~~~~~ 582 (943)
++.+|+++.+.++....... .....+|+++.|+|+.|-..+ |.....+...+|+|+.|+++.+ +|...+......
T Consensus 119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~n--w~~v~~i~eqLp~Le~LNls~N-rl~~~~~s~~~~- 194 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHN--WFPVLKIAEQLPSLENLNLSSN-RLSNFISSNTTL- 194 (505)
T ss_pred hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHh--HHHHHHHHHhcccchhcccccc-cccCCccccchh-
Confidence 34555555555555433221 223346666666666654322 3333455667777777777765 222222211111
Q ss_pred hhhhhcccccccEEEeecCCCCC-CCCccccCccccceEEeccCCCcccc-CCccCCCCccEEEeccCCCCccccccccc
Q 048004 583 QQQLCELSCRLEYLTLSGCQGLV-KLPQSSLSLNSLREIEIYKCSSLVSF-PEVALPSKLKKIEIRECDALKSLPEAWMC 660 (943)
Q Consensus 583 ~~~l~~~~~~L~~L~l~~~~~l~-~l~~~~~~l~~L~~L~l~~~~~l~~~-~~~~~~~~L~~L~l~~~~~l~~~~~~~~~ 660 (943)
..+.|+.|.++.|...- .+-.....+|+|+.|++.+|..+... .+...+..|++|+|++|+.+.. +.....
T Consensus 195 ------~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~-~~~~~~ 267 (505)
T KOG3207|consen 195 ------LLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDF-DQGYKV 267 (505)
T ss_pred ------hhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCccccc-cccccc
Confidence 22577777777776542 22223446778888888877433221 1234466777777777655543 222222
Q ss_pred CCCCCCCeEEEeecC
Q 048004 661 GTNSSLEILSIQGCH 675 (943)
Q Consensus 661 ~~~~~L~~L~l~~~~ 675 (943)
+.++.|+.|+++.|.
T Consensus 268 ~~l~~L~~Lnls~tg 282 (505)
T KOG3207|consen 268 GTLPGLNQLNLSSTG 282 (505)
T ss_pred ccccchhhhhccccC
Confidence 667777777777765
No 32
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.65 E-value=3.1e-09 Score=108.51 Aligned_cols=116 Identities=16% Similarity=0.084 Sum_probs=57.3
Q ss_pred CCCcCeEeecCCCCce-ecCCCCCCCCCcceEeecccCCCCccccccCCCCccceEEecCCCchhhhhhhhccccCCCCC
Q 048004 738 LRQLQEIEIWECENLV-SFPQGGLPCAKLSMLTVYGCERLKALPKGLHNLTNLHSLEIHGNTKIWKSMIEWGRGFHRFSS 816 (943)
Q Consensus 738 l~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~ 816 (943)
+++|+.|.|+.|.... .+-.....+|+|+.|++.+|.....-.....-+..|++|||++|+.+...... ....++.
T Consensus 196 l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~---~~~~l~~ 272 (505)
T KOG3207|consen 196 LSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGY---KVGTLPG 272 (505)
T ss_pred hhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCccccccccc---ccccccc
Confidence 4556666666664431 11112334566666676666433322223344556677777777655433221 2556666
Q ss_pred cCEEEEeecCCCceecCCCccccCCCCCCCCccceeeccCCC
Q 048004 817 LRELKISRCDDDMVSFPPEDIRLGTTLPLPASLTSLEIGYFP 858 (943)
Q Consensus 817 L~~L~ls~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 858 (943)
|+.|+++.|......+|+.. .......+++|++|++..++
T Consensus 273 L~~Lnls~tgi~si~~~d~~--s~~kt~~f~kL~~L~i~~N~ 312 (505)
T KOG3207|consen 273 LNQLNLSSTGIASIAEPDVE--SLDKTHTFPKLEYLNISENN 312 (505)
T ss_pred hhhhhccccCcchhcCCCcc--chhhhcccccceeeecccCc
Confidence 77777766522222222210 00111345667777776643
No 33
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.65 E-value=1.9e-07 Score=98.11 Aligned_cols=94 Identities=19% Similarity=0.210 Sum_probs=49.1
Q ss_pred CCCccceeeccCCCCCcccccccccCCCCCeEEEcCCCCC-CCCCCCCCCcccceeeecCCcchhhhhcCCCCCCCcccc
Q 048004 845 LPASLTSLEIGYFPNLERLSSSIVDLQNLTSLFLYHCPKL-KYFPEKGLPSSLLELIIYRCPLIAEKCGKDGGQYWDLLT 923 (943)
Q Consensus 845 ~l~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l-~~l~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~ 923 (943)
.+++|++|++++|..+. +|..+ -.+|+.|+++.+... -.++...+++++ .|++.+|-.+....-.+.+-.+.-.+
T Consensus 154 LPsSLk~L~Is~c~~i~-LP~~L--P~SLk~L~ls~n~~~sLeI~~~sLP~nl-~L~f~n~lkL~~~~f~d~~i~~~~~~ 229 (426)
T PRK15386 154 ISPSLKTLSLTGCSNII-LPEKL--PESLQSITLHIEQKTTWNISFEGFPDGL-DIDLQNSVLLSPDVFKDKNITFQGNA 229 (426)
T ss_pred cCCcccEEEecCCCccc-Ccccc--cccCcEEEecccccccccCccccccccc-EechhhhcccCHHHhhcccccccCcc
Confidence 34677777777776442 33211 157788887664311 134444566777 88888886655443333332222221
Q ss_pred CcceEEE-CCeeeecccccC
Q 048004 924 HIPHVAI-DGKSIFGDKYSR 942 (943)
Q Consensus 924 ~~~~~~~-~~~~~~~~~~~~ 942 (943)
-...... .|.=+||.+-+|
T Consensus 230 ~~~~~~~~~gd~~ygl~~~r 249 (426)
T PRK15386 230 LDVALHFRLGDIVYGLSSPR 249 (426)
T ss_pred cchhcccccCCEEEeccchH
Confidence 1111222 355567776555
No 34
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.56 E-value=3.3e-08 Score=98.47 Aligned_cols=186 Identities=17% Similarity=0.141 Sum_probs=108.7
Q ss_pred ccccEEEeecCCCCCCCCc----cccCccccceEEeccCCCccccCC---------------ccCCCCccEEEeccCCCC
Q 048004 591 CRLEYLTLSGCQGLVKLPQ----SSLSLNSLREIEIYKCSSLVSFPE---------------VALPSKLKKIEIRECDAL 651 (943)
Q Consensus 591 ~~L~~L~l~~~~~l~~l~~----~~~~l~~L~~L~l~~~~~l~~~~~---------------~~~~~~L~~L~l~~~~~l 651 (943)
|.|++|++|+|-.-..-+. .+.+++.|++|.+.+|. ++.... ....+.|+.+...+| .+
T Consensus 92 ~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~G-lg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rN-rl 169 (382)
T KOG1909|consen 92 PKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCG-LGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRN-RL 169 (382)
T ss_pred CceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCC-CChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecc-cc
Confidence 4888888888765433222 34567888888888873 322111 223455666655553 33
Q ss_pred cccccccc---cCCCCCCCeEEEeecCCCccccCccCCCCccEEEeccCCCccccccccccccCCCCCCCeeeeeccCCc
Q 048004 652 KSLPEAWM---CGTNSSLEILSIQGCHSLTYIAGVQLPPSLKRLEIDFCDNLRTLTVEEGIQSSSSSSSSSRSIWTCENL 728 (943)
Q Consensus 652 ~~~~~~~~---~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~~~L~~l~l~~~~~l 728 (943)
+.-+...+ .+..+.|+.+.++.|.+-. ..+
T Consensus 170 en~ga~~~A~~~~~~~~leevr~~qN~I~~-----------------------------------------------eG~ 202 (382)
T KOG1909|consen 170 ENGGATALAEAFQSHPTLEEVRLSQNGIRP-----------------------------------------------EGV 202 (382)
T ss_pred ccccHHHHHHHHHhccccceEEEecccccC-----------------------------------------------chh
Confidence 33221110 0334555555555544210 111
Q ss_pred ccccccCCCCCCcCeEeecCCCCce----ecCCCCCCCCCcceEeecccCCCCcccc----cc-CCCCccceEEecCCCc
Q 048004 729 KFLPSGLHNLRQLQEIEIWECENLV----SFPQGGLPCAKLSMLTVYGCERLKALPK----GL-HNLTNLHSLEIHGNTK 799 (943)
Q Consensus 729 ~~lp~~~~~l~~L~~L~l~~~~~~~----~~~~~~~~l~~L~~L~l~~~~~~~~~~~----~l-~~l~~L~~L~l~~n~~ 799 (943)
+.+...+..+++|+.||+.+|.+.. .+...+..+++|++|++++|.....-.. .+ ...++|+.|.+.+|..
T Consensus 203 ~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeI 282 (382)
T KOG1909|consen 203 TALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEI 282 (382)
T ss_pred HHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchh
Confidence 2223456778889999998886542 2233455567888999988876543211 22 4578888999988876
Q ss_pred hhhhhhhhccccCCCCCcCEEEEeec
Q 048004 800 IWKSMIEWGRGFHRFSSLRELKISRC 825 (943)
Q Consensus 800 ~~~~~~~~~~~~~~l~~L~~L~ls~n 825 (943)
...............+.|++|+|++|
T Consensus 283 t~da~~~la~~~~ek~dL~kLnLngN 308 (382)
T KOG1909|consen 283 TRDAALALAACMAEKPDLEKLNLNGN 308 (382)
T ss_pred HHHHHHHHHHHHhcchhhHHhcCCcc
Confidence 65544444334566788888888887
No 35
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.56 E-value=7e-08 Score=73.85 Aligned_cols=58 Identities=28% Similarity=0.481 Sum_probs=46.4
Q ss_pred CcccEEEecCccccccC-ccccCCCcccEEecCCCCCcccc-hhHhhcccCcEEecCCCc
Q 048004 177 QRLRAFSLRGYYIFELP-DSVGDLRYLRYLNLCGTKIRTLP-ESVNKLYNLHSLLLEDCD 234 (943)
Q Consensus 177 ~~L~~L~L~~~~i~~lp-~~~~~L~~L~~L~L~~n~i~~lp-~~i~~L~~L~~L~L~~~~ 234 (943)
++|++|++++|++..+| ..|..+++|++|++++|.++.+| ..|.++++|++|++++|.
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 46788888888888887 46788888888888888888887 457888888888888763
No 36
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.54 E-value=3.5e-09 Score=111.57 Aligned_cols=173 Identities=24% Similarity=0.245 Sum_probs=133.7
Q ss_pred CCCcccEEEecCccccccCccccCCCcccEEecCCCCCcccchhHhhcccCcEEecCCCcchhhchHhhccccccccccc
Q 048004 175 KPQRLRAFSLRGYYIFELPDSVGDLRYLRYLNLCGTKIRTLPESVNKLYNLHSLLLEDCDRLKKLCADMGNLAKLHHLKN 254 (943)
Q Consensus 175 ~l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~L~~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~~~~L~~L~~L~l 254 (943)
.+.--...||+.|++..+|..++.+..|+.|.|..|.+..+|..+++|..|.+|||+. +.+..+|..+..|+ |+.|-+
T Consensus 73 ~ltdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~-NqlS~lp~~lC~lp-Lkvli~ 150 (722)
T KOG0532|consen 73 DLTDTVFADLSRNRFSELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSS-NQLSHLPDGLCDLP-LKVLIV 150 (722)
T ss_pred cccchhhhhccccccccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhcc-chhhcCChhhhcCc-ceeEEE
Confidence 4555667899999999999999999999999999999999999999999999999999 68899999888876 899999
Q ss_pred CCCCccccCCcccCCccccccccceeeccCCCCCchhhhcccccCCeeeeccccccCCcccchhhhcCCCCCCCeEEEEe
Q 048004 255 SNTKSLEEMPVGIGKLTSLQTLCNFVVGKGSGSGLRELKLLTHLHGTLNISKLENVKCVGDAMEAQMDGKKNLKELSLKW 334 (943)
Q Consensus 255 ~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~l~~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~ 334 (943)
++|+ ++.+|.+|+.+..|.+|+...+. ...++..+.++..|+.|.+.
T Consensus 151 sNNk-l~~lp~~ig~~~tl~~ld~s~ne-------------------------------i~slpsql~~l~slr~l~vr- 197 (722)
T KOG0532|consen 151 SNNK-LTSLPEEIGLLPTLAHLDVSKNE-------------------------------IQSLPSQLGYLTSLRDLNVR- 197 (722)
T ss_pred ecCc-cccCCcccccchhHHHhhhhhhh-------------------------------hhhchHHhhhHHHHHHHHHh-
Confidence 9998 99999999977777777332221 11123334444444444443
Q ss_pred ecCCCCCCCcchhcHHhhhccCCCCCCcceEEEeccCCCCCCcCcCCCCCCCccEEEEecCCCCCCCCCCCCCCCCCeeE
Q 048004 335 TCSTDGSSSREAETEMGVLDMLKPHTNLEQFCIKGYGGMKFPTWLGDSLFSNLVTLEFEDCGMCTALPSVGQLPSLKHLT 414 (943)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~ 414 (943)
.+....+|..+.. -.|.+||++.|++....-.|.++..|++|.
T Consensus 198 ----------------------------------Rn~l~~lp~El~~---LpLi~lDfScNkis~iPv~fr~m~~Lq~l~ 240 (722)
T KOG0532|consen 198 ----------------------------------RNHLEDLPEELCS---LPLIRLDFSCNKISYLPVDFRKMRHLQVLQ 240 (722)
T ss_pred ----------------------------------hhhhhhCCHHHhC---CceeeeecccCceeecchhhhhhhhheeee
Confidence 3334455665543 358999999998865444899999999999
Q ss_pred Ecccc
Q 048004 415 VRGMS 419 (943)
Q Consensus 415 l~~~~ 419 (943)
|.+|+
T Consensus 241 LenNP 245 (722)
T KOG0532|consen 241 LENNP 245 (722)
T ss_pred eccCC
Confidence 99885
No 37
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.48 E-value=2.3e-08 Score=96.78 Aligned_cols=61 Identities=26% Similarity=0.369 Sum_probs=46.5
Q ss_pred ccCCCcccEEecCCCCCcccchhHhhcccCcEEecCCCcchhhchHhhcccccccccccCCCC
Q 048004 196 VGDLRYLRYLNLCGTKIRTLPESVNKLYNLHSLLLEDCDRLKKLCADMGNLAKLHHLKNSNTK 258 (943)
Q Consensus 196 ~~~L~~L~~L~L~~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~~~~L~~L~~L~l~~~~ 258 (943)
+...+.|..||||+|.|+.+.+++.-+++++.|++++| .+..+- ++..|++|++||+++|.
T Consensus 280 ~dTWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N-~i~~v~-nLa~L~~L~~LDLS~N~ 340 (490)
T KOG1259|consen 280 ADTWQELTELDLSGNLITQIDESVKLAPKLRRLILSQN-RIRTVQ-NLAELPQLQLLDLSGNL 340 (490)
T ss_pred cchHhhhhhccccccchhhhhhhhhhccceeEEecccc-ceeeeh-hhhhcccceEeecccch
Confidence 34456788888888888888888888888888888884 455544 37778888888888886
No 38
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.43 E-value=2.3e-07 Score=102.96 Aligned_cols=95 Identities=25% Similarity=0.349 Sum_probs=76.9
Q ss_pred cEEEecCccccccCccccCCCcccEEecCCCCCcccchhHhhcc-cCcEEecCCCcchhhchHhhcccccccccccCCCC
Q 048004 180 RAFSLRGYYIFELPDSVGDLRYLRYLNLCGTKIRTLPESVNKLY-NLHSLLLEDCDRLKKLCADMGNLAKLHHLKNSNTK 258 (943)
Q Consensus 180 ~~L~L~~~~i~~lp~~~~~L~~L~~L~L~~n~i~~lp~~i~~L~-~L~~L~L~~~~~l~~lp~~~~~L~~L~~L~l~~~~ 258 (943)
..+++.++.+..-+..+..+..++.|++.+|.++++|...+.+. +|+.|++++ +.+..+|..++.+++|+.|++++|.
T Consensus 96 ~~l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~-N~i~~l~~~~~~l~~L~~L~l~~N~ 174 (394)
T COG4886 96 PSLDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSD-NKIESLPSPLRNLPNLKNLDLSFND 174 (394)
T ss_pred ceeeccccccccCchhhhcccceeEEecCCcccccCccccccchhhcccccccc-cchhhhhhhhhccccccccccCCch
Confidence 35788888875555566677899999999999999998888885 999999998 6788888889999999999999998
Q ss_pred ccccCCcccCCccccccc
Q 048004 259 SLEEMPVGIGKLTSLQTL 276 (943)
Q Consensus 259 ~~~~~p~~i~~L~~L~~L 276 (943)
+..+|...+.+++|+.|
T Consensus 175 -l~~l~~~~~~~~~L~~L 191 (394)
T COG4886 175 -LSDLPKLLSNLSNLNNL 191 (394)
T ss_pred -hhhhhhhhhhhhhhhhe
Confidence 77777665555555544
No 39
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.36 E-value=1.4e-06 Score=91.80 Aligned_cols=37 Identities=32% Similarity=0.606 Sum_probs=18.0
Q ss_pred CCCCeEEEeecCCCccccCccCCCCccEEEeccCCCcccc
Q 048004 664 SSLEILSIQGCHSLTYIAGVQLPPSLKRLEIDFCDNLRTL 703 (943)
Q Consensus 664 ~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~c~~L~~l 703 (943)
.+++.|++++| .++.+| .+|.+|+.|.+++|.+++.+
T Consensus 52 ~~l~~L~Is~c-~L~sLP--~LP~sLtsL~Lsnc~nLtsL 88 (426)
T PRK15386 52 RASGRLYIKDC-DIESLP--VLPNELTEITIENCNNLTTL 88 (426)
T ss_pred cCCCEEEeCCC-CCcccC--CCCCCCcEEEccCCCCcccC
Confidence 44555555555 244444 34445555555555554443
No 40
>PLN03150 hypothetical protein; Provisional
Probab=98.35 E-value=4.3e-07 Score=105.29 Aligned_cols=93 Identities=23% Similarity=0.344 Sum_probs=83.1
Q ss_pred cccEEEecCcccc-ccCccccCCCcccEEecCCCCCc-ccchhHhhcccCcEEecCCCcchhhchHhhcccccccccccC
Q 048004 178 RLRAFSLRGYYIF-ELPDSVGDLRYLRYLNLCGTKIR-TLPESVNKLYNLHSLLLEDCDRLKKLCADMGNLAKLHHLKNS 255 (943)
Q Consensus 178 ~L~~L~L~~~~i~-~lp~~~~~L~~L~~L~L~~n~i~-~lp~~i~~L~~L~~L~L~~~~~l~~lp~~~~~L~~L~~L~l~ 255 (943)
.++.|+|++|.+. .+|..|+.+++|++|+|++|.++ .+|..++.+++|++|+|++|.....+|..+++|++|++|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 4788999999974 67889999999999999999998 899999999999999999987777899999999999999999
Q ss_pred CCCccccCCcccCCc
Q 048004 256 NTKSLEEMPVGIGKL 270 (943)
Q Consensus 256 ~~~~~~~~p~~i~~L 270 (943)
+|.....+|..++.+
T Consensus 499 ~N~l~g~iP~~l~~~ 513 (623)
T PLN03150 499 GNSLSGRVPAALGGR 513 (623)
T ss_pred CCcccccCChHHhhc
Confidence 999777888877653
No 41
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.26 E-value=1.5e-06 Score=66.47 Aligned_cols=59 Identities=20% Similarity=0.317 Sum_probs=37.7
Q ss_pred CCcCeEeecCCCCceecC-CCCCCCCCcceEeecccCCCCccccccCCCCccceEEecCCC
Q 048004 739 RQLQEIEIWECENLVSFP-QGGLPCAKLSMLTVYGCERLKALPKGLHNLTNLHSLEIHGNT 798 (943)
Q Consensus 739 ~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~ 798 (943)
|+|++|++++|. +..+| ..+..+++|++|++++|.+....|..|.++++|++|++++|+
T Consensus 1 p~L~~L~l~~n~-l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNK-LTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSST-ESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCC-CCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 456777777763 33444 345567777777777766655545566777777777777764
No 42
>PLN03150 hypothetical protein; Provisional
Probab=98.20 E-value=2.1e-06 Score=99.67 Aligned_cols=98 Identities=23% Similarity=0.338 Sum_probs=83.5
Q ss_pred CCccccccCCCcccEEEecCcccc-ccCccccCCCcccEEecCCCCCc-ccchhHhhcccCcEEecCCCcchhhchHhhc
Q 048004 167 PSILPKLLKPQRLRAFSLRGYYIF-ELPDSVGDLRYLRYLNLCGTKIR-TLPESVNKLYNLHSLLLEDCDRLKKLCADMG 244 (943)
Q Consensus 167 ~~~~~~~~~l~~L~~L~L~~~~i~-~lp~~~~~L~~L~~L~L~~n~i~-~lp~~i~~L~~L~~L~L~~~~~l~~lp~~~~ 244 (943)
..++..+..+++|+.|+|++|.+. .+|..++.+++|++|+|++|+++ .+|+.++++++|++|+|++|.....+|..++
T Consensus 432 g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~ 511 (623)
T PLN03150 432 GFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALG 511 (623)
T ss_pred ccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHh
Confidence 355666669999999999999985 78999999999999999999998 8999999999999999999887789999887
Q ss_pred cc-ccccccccCCCCccccCC
Q 048004 245 NL-AKLHHLKNSNTKSLEEMP 264 (943)
Q Consensus 245 ~L-~~L~~L~l~~~~~~~~~p 264 (943)
.+ .++..+++.+|..+-..|
T Consensus 512 ~~~~~~~~l~~~~N~~lc~~p 532 (623)
T PLN03150 512 GRLLHRASFNFTDNAGLCGIP 532 (623)
T ss_pred hccccCceEEecCCccccCCC
Confidence 64 567788888887444333
No 43
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.19 E-value=1.4e-06 Score=60.47 Aligned_cols=39 Identities=28% Similarity=0.443 Sum_probs=22.2
Q ss_pred cccEEEecCccccccCccccCCCcccEEecCCCCCcccc
Q 048004 178 RLRAFSLRGYYIFELPDSVGDLRYLRYLNLCGTKIRTLP 216 (943)
Q Consensus 178 ~L~~L~L~~~~i~~lp~~~~~L~~L~~L~L~~n~i~~lp 216 (943)
+|++|++++|+|+.+|..+++|++|++|++++|.|+++|
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCc
Confidence 456666666666666555666666666666666665543
No 44
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.18 E-value=6.3e-07 Score=87.07 Aligned_cols=99 Identities=30% Similarity=0.316 Sum_probs=70.7
Q ss_pred CCCcccEEEecCccccccCccccCCCcccEEecCCCCCcccchhHhhcccCcEEecCCCcchhhchHhhccccccccccc
Q 048004 175 KPQRLRAFSLRGYYIFELPDSVGDLRYLRYLNLCGTKIRTLPESVNKLYNLHSLLLEDCDRLKKLCADMGNLAKLHHLKN 254 (943)
Q Consensus 175 ~l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~L~~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~~~~L~~L~~L~l 254 (943)
..+.|+.+||++|.|+.+.++..-++.+|.|++|+|.|..+- .+..|++|+.|||++| .+..+-..=.+|.+.+.|.+
T Consensus 282 TWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~-nLa~L~~L~~LDLS~N-~Ls~~~Gwh~KLGNIKtL~L 359 (490)
T KOG1259|consen 282 TWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQ-NLAELPQLQLLDLSGN-LLAECVGWHLKLGNIKTLKL 359 (490)
T ss_pred hHhhhhhccccccchhhhhhhhhhccceeEEeccccceeeeh-hhhhcccceEeecccc-hhHhhhhhHhhhcCEeeeeh
Confidence 567888999999999999888888899999999999998874 4888999999999984 55554443345556666666
Q ss_pred CCCCccccCCcccCCcccccccc
Q 048004 255 SNTKSLEEMPVGIGKLTSLQTLC 277 (943)
Q Consensus 255 ~~~~~~~~~p~~i~~L~~L~~L~ 277 (943)
++|. +..+ .++++|-+|..|+
T Consensus 360 a~N~-iE~L-SGL~KLYSLvnLD 380 (490)
T KOG1259|consen 360 AQNK-IETL-SGLRKLYSLVNLD 380 (490)
T ss_pred hhhh-Hhhh-hhhHhhhhheecc
Confidence 6654 3332 2344555555553
No 45
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.12 E-value=8.5e-08 Score=93.05 Aligned_cols=163 Identities=15% Similarity=0.113 Sum_probs=113.5
Q ss_pred CCCCCCcCeEeecCCCCceecCCCCCCCCCcceEeecccCCCCcc--ccccCCCCccceEEecCCCchhhhhhhhccccC
Q 048004 735 LHNLRQLQEIEIWECENLVSFPQGGLPCAKLSMLTVYGCERLKAL--PKGLHNLTNLHSLEIHGNTKIWKSMIEWGRGFH 812 (943)
Q Consensus 735 ~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~--~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~ 812 (943)
+..|.+|+.|.|.++.....+...+..-.+|+.|+|+.|.-.+.. .-.+.+|+.|.+|++++|........... ..
T Consensus 206 Ls~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V--~h 283 (419)
T KOG2120|consen 206 LSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAV--AH 283 (419)
T ss_pred HHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHH--hh
Confidence 456888999999998888777777777789999999999766543 22458899999999999975543322221 11
Q ss_pred CCCCcCEEEEeecCCCceecCCCccccCCCCCCCCccceeeccCCCCCcccc-cccccCCCCCeEEEcCCCCCCC--CCC
Q 048004 813 RFSSLRELKISRCDDDMVSFPPEDIRLGTTLPLPASLTSLEIGYFPNLERLS-SSIVDLQNLTSLFLYHCPKLKY--FPE 889 (943)
Q Consensus 813 ~l~~L~~L~ls~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~-~~~~~l~~L~~L~l~~c~~l~~--l~~ 889 (943)
-=++|+.|+|+|+...+..-.-+.. -..+++|.+|||++|..++.-. ..+..|+.|++|.++.|-.+.. +-.
T Consensus 284 ise~l~~LNlsG~rrnl~~sh~~tL-----~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~ 358 (419)
T KOG2120|consen 284 ISETLTQLNLSGYRRNLQKSHLSTL-----VRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDIIPETLLE 358 (419)
T ss_pred hchhhhhhhhhhhHhhhhhhHHHHH-----HHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCCChHHeee
Confidence 1268899999997322221111110 1468899999999998877522 2468899999999999954431 111
Q ss_pred CCCCcccceeeecCC
Q 048004 890 KGLPSSLLELIIYRC 904 (943)
Q Consensus 890 ~~~~~~L~~L~i~~c 904 (943)
..-.++|..|++.||
T Consensus 359 l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 359 LNSKPSLVYLDVFGC 373 (419)
T ss_pred eccCcceEEEEeccc
Confidence 112589999999998
No 46
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.08 E-value=1.5e-07 Score=91.32 Aligned_cols=164 Identities=19% Similarity=0.191 Sum_probs=91.5
Q ss_pred CCCCCcccEEEEcCCcCeeeeccccCCCCCccEEEEecccccchhhhhhhhhhhccCCccEEeecCCCCcccchhhhhhH
Q 048004 502 VSSLPALCKLHIGGCKKVVWRRPLKLRLPKLEELEIENMKEQTYIWKSHKELLQDICSLKRLTIDSCPKLQSLVAEEEKD 581 (943)
Q Consensus 502 ~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~i~~~~~~~~~~l~~L~~L~l~~~~~L~~l~~~~~~~ 581 (943)
++.+.+|+.|.+.++.+...+......-.+|+.|+++.+..++.. .....+.+++.|.+|+++.|.-.+.....
T Consensus 206 Ls~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n--~~~ll~~scs~L~~LNlsWc~l~~~~Vtv---- 279 (419)
T KOG2120|consen 206 LSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTEN--ALQLLLSSCSRLDELNLSWCFLFTEKVTV---- 279 (419)
T ss_pred HHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchh--HHHHHHHhhhhHhhcCchHhhccchhhhH----
Confidence 334556666666666665555554555566666666666554432 22345567777777777777544332111
Q ss_pred HhhhhhcccccccEEEeecCCCCC---CCCccccCccccceEEeccCCCccc--cCCccCCCCccEEEeccCCCCccccc
Q 048004 582 QQQQLCELSCRLEYLTLSGCQGLV---KLPQSSLSLNSLREIEIYKCSSLVS--FPEVALPSKLKKIEIRECDALKSLPE 656 (943)
Q Consensus 582 ~~~~l~~~~~~L~~L~l~~~~~l~---~l~~~~~~l~~L~~L~l~~~~~l~~--~~~~~~~~~L~~L~l~~~~~l~~~~~ 656 (943)
......++|+.|+++||..-- .+......+|+|.+||+++|..++. +..+..++.|++|.++.|..+..--.
T Consensus 280 ---~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~p~~~ 356 (419)
T KOG2120|consen 280 ---AVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDIIPETL 356 (419)
T ss_pred ---HHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCCChHHe
Confidence 112233677778887775321 2223345677777777777766654 12244466777777777765421111
Q ss_pred ccccCCCCCCCeEEEeecC
Q 048004 657 AWMCGTNSSLEILSIQGCH 675 (943)
Q Consensus 657 ~~~~~~~~~L~~L~l~~~~ 675 (943)
..+ ...|+|.+|++.+|-
T Consensus 357 ~~l-~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 357 LEL-NSKPSLVYLDVFGCV 374 (419)
T ss_pred eee-ccCcceEEEEecccc
Confidence 111 455667777776654
No 47
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.06 E-value=6.6e-07 Score=89.41 Aligned_cols=67 Identities=16% Similarity=0.123 Sum_probs=33.2
Q ss_pred CCCCCcccEEEEcCCcCee----eeccccCCCCCccEEEEecccccchhhhhhhhhhhccCCccEEeecCC
Q 048004 502 VSSLPALCKLHIGGCKKVV----WRRPLKLRLPKLEELEIENMKEQTYIWKSHKELLQDICSLKRLTIDSC 568 (943)
Q Consensus 502 ~~~l~~L~~L~l~~~~~~~----~~~~~~~~l~~L~~L~l~~~~~~~~i~~~~~~~~~~l~~L~~L~l~~~ 568 (943)
+...+.|+++.+.+|.+.. .....+..+++|+.|++.+|.....-...-...+..+++|+.|++++|
T Consensus 181 ~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dc 251 (382)
T KOG1909|consen 181 FQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDC 251 (382)
T ss_pred HHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccccc
Confidence 3445666666666665432 122234455666666666555443332233334445555555555555
No 48
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.98 E-value=1.7e-06 Score=95.89 Aligned_cols=100 Identities=26% Similarity=0.337 Sum_probs=78.3
Q ss_pred ccCCCcccEEEecCccccccCccccCCCcccEEecCCCCCcccchhHhhcccCcEEecCCCcchhhchHhhccccccccc
Q 048004 173 LLKPQRLRAFSLRGYYIFELPDSVGDLRYLRYLNLCGTKIRTLPESVNKLYNLHSLLLEDCDRLKKLCADMGNLAKLHHL 252 (943)
Q Consensus 173 ~~~l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~L~~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~~~~L~~L~~L 252 (943)
+..+++|..|++.+|.|..+...+..+.+|++|++++|.|+.+ ..+..++.|+.|++++ +.+..++ .+..+++|+.+
T Consensus 91 l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i-~~l~~l~~L~~L~l~~-N~i~~~~-~~~~l~~L~~l 167 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKL-EGLSTLTLLKELNLSG-NLISDIS-GLESLKSLKLL 167 (414)
T ss_pred cccccceeeeeccccchhhcccchhhhhcchheeccccccccc-cchhhccchhhheecc-Ccchhcc-CCccchhhhcc
Confidence 4477889999999999888866688889999999999999888 4577888899999998 4666665 56778899999
Q ss_pred ccCCCCccccCCcc-cCCccccccc
Q 048004 253 KNSNTKSLEEMPVG-IGKLTSLQTL 276 (943)
Q Consensus 253 ~l~~~~~~~~~p~~-i~~L~~L~~L 276 (943)
++++|. +..+... ...+.+++.+
T Consensus 168 ~l~~n~-i~~ie~~~~~~~~~l~~l 191 (414)
T KOG0531|consen 168 DLSYNR-IVDIENDELSELISLEEL 191 (414)
T ss_pred cCCcch-hhhhhhhhhhhccchHHH
Confidence 999988 6655543 4566666666
No 49
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.97 E-value=6.3e-06 Score=57.27 Aligned_cols=40 Identities=28% Similarity=0.467 Sum_probs=30.8
Q ss_pred CcccEEecCCCCCcccchhHhhcccCcEEecCCCcchhhch
Q 048004 200 RYLRYLNLCGTKIRTLPESVNKLYNLHSLLLEDCDRLKKLC 240 (943)
Q Consensus 200 ~~L~~L~L~~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp 240 (943)
++|++|++++|+|+++|..+++|++|++|++++| .+..+|
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N-~i~~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNN-PISDIS 40 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSS-CCSBEG
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCC-CCCCCc
Confidence 4788999999999999888889999999999885 455444
No 50
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.85 E-value=4.5e-06 Score=71.66 Aligned_cols=90 Identities=24% Similarity=0.264 Sum_probs=72.5
Q ss_pred CCCcccEEEecCccccccCcccc-CCCcccEEecCCCCCcccchhHhhcccCcEEecCCCcchhhchHhhcccccccccc
Q 048004 175 KPQRLRAFSLRGYYIFELPDSVG-DLRYLRYLNLCGTKIRTLPESVNKLYNLHSLLLEDCDRLKKLCADMGNLAKLHHLK 253 (943)
Q Consensus 175 ~l~~L~~L~L~~~~i~~lp~~~~-~L~~L~~L~L~~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~~~~L~~L~~L~ 253 (943)
....|+..+|++|.+.++|..|. +.+.++.|+|++|.|.++|.++..++.|+.|+++. +.+...|..|..|.+|-.|+
T Consensus 51 ~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~-N~l~~~p~vi~~L~~l~~Ld 129 (177)
T KOG4579|consen 51 KGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRF-NPLNAEPRVIAPLIKLDMLD 129 (177)
T ss_pred CCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhccccc-CccccchHHHHHHHhHHHhc
Confidence 44667788888888888887774 44588888888888888888888888888888888 56777788888888888888
Q ss_pred cCCCCccccCCcc
Q 048004 254 NSNTKSLEEMPVG 266 (943)
Q Consensus 254 l~~~~~~~~~p~~ 266 (943)
..+|. ...+|..
T Consensus 130 s~~na-~~eid~d 141 (177)
T KOG4579|consen 130 SPENA-RAEIDVD 141 (177)
T ss_pred CCCCc-cccCcHH
Confidence 88877 6667655
No 51
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.83 E-value=1.5e-06 Score=99.97 Aligned_cols=60 Identities=28% Similarity=0.319 Sum_probs=32.6
Q ss_pred eeeccCCCCC-cccccccccCCCCCeEEEcCCCCCCCCCCCCC---CcccceeeecCCcchhhh
Q 048004 851 SLEIGYFPNL-ERLSSSIVDLQNLTSLFLYHCPKLKYFPEKGL---PSSLLELIIYRCPLIAEK 910 (943)
Q Consensus 851 ~L~l~~~~~l-~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~---~~~L~~L~i~~c~~l~~~ 910 (943)
.+.+.+|+.+ ..+..-...+.+++.|+++.|...+.-.-... ...++.+++.+|+.+...
T Consensus 380 ~~~l~gc~~l~~~l~~~~~~~~~l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~~~~~ 443 (482)
T KOG1947|consen 380 ELSLRGCPNLTESLELRLCRSDSLRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRVITLK 443 (482)
T ss_pred HHHhcCCcccchHHHHHhccCCccceEecccCccccccchHHHhhhhhccccCCccCcccccch
Confidence 4556666666 22222223334477788877766543211111 356777888888776543
No 52
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.82 E-value=2.8e-06 Score=72.86 Aligned_cols=99 Identities=17% Similarity=0.254 Sum_probs=84.7
Q ss_pred CcccEEEecCccccccCc---cccCCCcccEEecCCCCCcccchhH-hhcccCcEEecCCCcchhhchHhhccccccccc
Q 048004 177 QRLRAFSLRGYYIFELPD---SVGDLRYLRYLNLCGTKIRTLPESV-NKLYNLHSLLLEDCDRLKKLCADMGNLAKLHHL 252 (943)
Q Consensus 177 ~~L~~L~L~~~~i~~lp~---~~~~L~~L~~L~L~~n~i~~lp~~i-~~L~~L~~L~L~~~~~l~~lp~~~~~L~~L~~L 252 (943)
+.+..++|+.|.+..+++ .+.+..+|...+|++|.++.+|+.+ .+.+..++|++++ +.+..+|.++..++.|+.|
T Consensus 27 kE~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~-neisdvPeE~Aam~aLr~l 105 (177)
T KOG4579|consen 27 KELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLAN-NEISDVPEELAAMPALRSL 105 (177)
T ss_pred HHhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcch-hhhhhchHHHhhhHHhhhc
Confidence 345668899998776664 4567788999999999999999888 5567999999998 7899999999999999999
Q ss_pred ccCCCCccccCCcccCCcccccccc
Q 048004 253 KNSNTKSLEEMPVGIGKLTSLQTLC 277 (943)
Q Consensus 253 ~l~~~~~~~~~p~~i~~L~~L~~L~ 277 (943)
+++.|. +...|.-|..|.+|-.|+
T Consensus 106 Nl~~N~-l~~~p~vi~~L~~l~~Ld 129 (177)
T KOG4579|consen 106 NLRFNP-LNAEPRVIAPLIKLDMLD 129 (177)
T ss_pred ccccCc-cccchHHHHHHHhHHHhc
Confidence 999999 888888888888887773
No 53
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.67 E-value=5.5e-06 Score=91.89 Aligned_cols=99 Identities=26% Similarity=0.391 Sum_probs=79.8
Q ss_pred CCCcccEEEecCccccccCccccCCCcccEEecCCCCCcccchhHhhcccCcEEecCCCcchhhchHhhccccccccccc
Q 048004 175 KPQRLRAFSLRGYYIFELPDSVGDLRYLRYLNLCGTKIRTLPESVNKLYNLHSLLLEDCDRLKKLCADMGNLAKLHHLKN 254 (943)
Q Consensus 175 ~l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~L~~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~~~~L~~L~~L~l 254 (943)
.+..++.+.+..|.+..+-..++.+++|.+|++.+|.|+.+...+..+++|++|++++ +.+..+. .+..++.|+.|++
T Consensus 70 ~l~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~-N~I~~i~-~l~~l~~L~~L~l 147 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSF-NKITKLE-GLSTLTLLKELNL 147 (414)
T ss_pred HhHhHHhhccchhhhhhhhcccccccceeeeeccccchhhcccchhhhhcchheeccc-ccccccc-chhhccchhhhee
Confidence 4566777778888888866668899999999999999999866588999999999999 5677665 6788888999999
Q ss_pred CCCCccccCCcccCCcccccccc
Q 048004 255 SNTKSLEEMPVGIGKLTSLQTLC 277 (943)
Q Consensus 255 ~~~~~~~~~p~~i~~L~~L~~L~ 277 (943)
++|. +..++ ++..+++|+.++
T Consensus 148 ~~N~-i~~~~-~~~~l~~L~~l~ 168 (414)
T KOG0531|consen 148 SGNL-ISDIS-GLESLKSLKLLD 168 (414)
T ss_pred ccCc-chhcc-CCccchhhhccc
Confidence 9998 66553 455566666663
No 54
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.60 E-value=3.1e-06 Score=92.34 Aligned_cols=155 Identities=23% Similarity=0.181 Sum_probs=101.0
Q ss_pred cccccCCCcccEEEecCccccccCc-----------------------------ccc---CCCcccEEecCCCCCcccch
Q 048004 170 LPKLLKPQRLRAFSLRGYYIFELPD-----------------------------SVG---DLRYLRYLNLCGTKIRTLPE 217 (943)
Q Consensus 170 ~~~~~~l~~L~~L~L~~~~i~~lp~-----------------------------~~~---~L~~L~~L~L~~n~i~~lp~ 217 (943)
|-++|.++.||+|.|.++.+...-. .|+ .-..|.+-+.++|.+..+.+
T Consensus 102 pi~ifpF~sLr~LElrg~~L~~~~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~~mD~ 181 (1096)
T KOG1859|consen 102 PISIFPFRSLRVLELRGCDLSTAKGLQELRHQLEKLICHNSLDALRHVFASCGGDISNSPVWNKLATASFSYNRLVLMDE 181 (1096)
T ss_pred CceeccccceeeEEecCcchhhhhhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccchhhhhHhhhhcchhhHHhHHH
Confidence 5577899999999999987644210 000 01235677888888888888
Q ss_pred hHhhcccCcEEecCCCcchhhchHhhcccccccccccCCCCccccCCcc-cCCccccccccceeeccCCCCCchhhhccc
Q 048004 218 SVNKLYNLHSLLLEDCDRLKKLCADMGNLAKLHHLKNSNTKSLEEMPVG-IGKLTSLQTLCNFVVGKGSGSGLRELKLLT 296 (943)
Q Consensus 218 ~i~~L~~L~~L~L~~~~~l~~lp~~~~~L~~L~~L~l~~~~~~~~~p~~-i~~L~~L~~L~~~~~~~~~~~~l~~l~~L~ 296 (943)
++.-++.|+.|||++| .+...- .+..+++|+|||+++|. ++.+|.- ..... |+.|...++...+-.++.+|++|.
T Consensus 182 SLqll~ale~LnLshN-k~~~v~-~Lr~l~~LkhLDlsyN~-L~~vp~l~~~gc~-L~~L~lrnN~l~tL~gie~LksL~ 257 (1096)
T KOG1859|consen 182 SLQLLPALESLNLSHN-KFTKVD-NLRRLPKLKHLDLSYNC-LRHVPQLSMVGCK-LQLLNLRNNALTTLRGIENLKSLY 257 (1096)
T ss_pred HHHHHHHhhhhccchh-hhhhhH-HHHhcccccccccccch-hccccccchhhhh-heeeeecccHHHhhhhHHhhhhhh
Confidence 8999999999999994 565554 78999999999999999 8888864 33333 666644444333344555566655
Q ss_pred ccCCeeeeccccccCCcccchhhhcCCCCCCCeEEEEee
Q 048004 297 HLHGTLNISKLENVKCVGDAMEAQMDGKKNLKELSLKWT 335 (943)
Q Consensus 297 ~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 335 (943)
+|. ++.+-+.+... -..+..+..|+.|.|.+|
T Consensus 258 ~LD--lsyNll~~hse-----L~pLwsLs~L~~L~LeGN 289 (1096)
T KOG1859|consen 258 GLD--LSYNLLSEHSE-----LEPLWSLSSLIVLWLEGN 289 (1096)
T ss_pred ccc--hhHhhhhcchh-----hhHHHHHHHHHHHhhcCC
Confidence 552 33333322211 112344566777777764
No 55
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.33 E-value=2.6e-05 Score=89.62 Aligned_cols=116 Identities=23% Similarity=0.365 Sum_probs=61.0
Q ss_pred hccCCccEEeecCCCCcccchhhhhhHHhhhhhcccccccEEEeecC-CCCCCCC----ccccCccccceEEeccCCCcc
Q 048004 555 QDICSLKRLTIDSCPKLQSLVAEEEKDQQQQLCELSCRLEYLTLSGC-QGLVKLP----QSSLSLNSLREIEIYKCSSLV 629 (943)
Q Consensus 555 ~~l~~L~~L~l~~~~~L~~l~~~~~~~~~~~l~~~~~~L~~L~l~~~-~~l~~l~----~~~~~l~~L~~L~l~~~~~l~ 629 (943)
...+.|+.+.+.+|..+.... ...+....+.|+.|++++| ......+ .....+++|+.|++++|..++
T Consensus 185 ~~~~~L~~l~l~~~~~~~~~~-------~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~is 257 (482)
T KOG1947|consen 185 SSCPLLKRLSLSGCSKITDDS-------LDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVT 257 (482)
T ss_pred hhCchhhHhhhcccccCChhh-------HHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccC
Confidence 345666666666666655432 1112223356777777663 2222111 133345667777777765544
Q ss_pred ccC--C-ccCCCCccEEEeccCCCCcccccccccCCCCCCCeEEEeecCCC
Q 048004 630 SFP--E-VALPSKLKKIEIRECDALKSLPEAWMCGTNSSLEILSIQGCHSL 677 (943)
Q Consensus 630 ~~~--~-~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l 677 (943)
+.. . ...+++|+.|.+.+|..++..........+++|++|++++|..+
T Consensus 258 d~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~ 308 (482)
T KOG1947|consen 258 DIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGL 308 (482)
T ss_pred chhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccc
Confidence 322 1 11256677777666665444433333356666777777776654
No 56
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.32 E-value=2e-05 Score=86.25 Aligned_cols=97 Identities=26% Similarity=0.256 Sum_probs=60.1
Q ss_pred CCCcccEEEecCccccccCccccCCCcccEEecCCCCCcccch-hHhhcccCcEEecCCCcchhhchHhhcccccccccc
Q 048004 175 KPQRLRAFSLRGYYIFELPDSVGDLRYLRYLNLCGTKIRTLPE-SVNKLYNLHSLLLEDCDRLKKLCADMGNLAKLHHLK 253 (943)
Q Consensus 175 ~l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~L~~n~i~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~~~~~L~~L~~L~ 253 (943)
-++.|+.|+|++|++.++- .+..+.+|++|||++|.++.+|. +...++ |+.|.+++ +.++.+- ++.+|.+|+.||
T Consensus 185 ll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrn-N~l~tL~-gie~LksL~~LD 260 (1096)
T KOG1859|consen 185 LLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRN-NALTTLR-GIENLKSLYGLD 260 (1096)
T ss_pred HHHHhhhhccchhhhhhhH-HHHhcccccccccccchhccccccchhhhh-heeeeecc-cHHHhhh-hHHhhhhhhccc
Confidence 4566777777777776663 56677777777777777777763 223333 77777776 4555553 577777777777
Q ss_pred cCCCCccccCCc--ccCCccccccc
Q 048004 254 NSNTKSLEEMPV--GIGKLTSLQTL 276 (943)
Q Consensus 254 l~~~~~~~~~p~--~i~~L~~L~~L 276 (943)
+++|- +..... -++.|..|+.|
T Consensus 261 lsyNl-l~~hseL~pLwsLs~L~~L 284 (1096)
T KOG1859|consen 261 LSYNL-LSEHSELEPLWSLSSLIVL 284 (1096)
T ss_pred hhHhh-hhcchhhhHHHHHHHHHHH
Confidence 77775 222111 14445555555
No 57
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.19 E-value=0.00017 Score=70.74 Aligned_cols=162 Identities=17% Similarity=0.172 Sum_probs=85.4
Q ss_pred ccCCCcccEEecccCccccc---CCCCCCCccceEEeccccC----ccccCCCCCcccEEEEcCCcCeeeeccccCCCCC
Q 048004 459 VEGFPKLRELHILRCSKLKG---TFPEHLPALEMLVIEGCEE----LLVSVSSLPALCKLHIGGCKKVVWRRPLKLRLPK 531 (943)
Q Consensus 459 ~~~~~~L~~L~l~~c~~l~~---~~p~~l~~L~~L~l~~~~~----l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~ 531 (943)
...+|.|+.|+++. +.+.. .+|....+|+.|.+.|... ....+..+|.+++|+++.|+.......
T Consensus 93 le~lP~l~~LNls~-N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~D------- 164 (418)
T KOG2982|consen 93 LEQLPALTTLNLSC-NSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLD------- 164 (418)
T ss_pred HhcCccceEeeccC-CcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccc-------
Confidence 45688999999987 55542 4454556777777766542 223445677777777777643221111
Q ss_pred ccEEEEecccccchhhhhhhhhhhccCCccEEeecCCCCcccchhhhhhHHhhhhhcccccccEEEeecCCCCCC-CCcc
Q 048004 532 LEELEIENMKEQTYIWKSHKELLQDICSLKRLTIDSCPKLQSLVAEEEKDQQQQLCELSCRLEYLTLSGCQGLVK-LPQS 610 (943)
Q Consensus 532 L~~L~l~~~~~~~~i~~~~~~~~~~l~~L~~L~l~~~~~L~~l~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~-l~~~ 610 (943)
.+-. -.--+.++++....|... .|. ....+.+.||++..+.+..|+.-+. -...
T Consensus 165 -------d~c~-----------e~~s~~v~tlh~~~c~~~--~w~-----~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~ 219 (418)
T KOG2982|consen 165 -------DNCI-----------EDWSTEVLTLHQLPCLEQ--LWL-----NKNKLSRIFPNVNSVFVCEGPLKTESSEKG 219 (418)
T ss_pred -------cccc-----------cccchhhhhhhcCCcHHH--HHH-----HHHhHHhhcccchheeeecCcccchhhccc
Confidence 0000 000123344444444322 121 2233445667888888888765432 2223
Q ss_pred ccCccccceEEeccCCCccccC---CccCCCCccEEEeccCCCCccc
Q 048004 611 SLSLNSLREIEIYKCSSLVSFP---EVALPSKLKKIEIRECDALKSL 654 (943)
Q Consensus 611 ~~~l~~L~~L~l~~~~~l~~~~---~~~~~~~L~~L~l~~~~~l~~~ 654 (943)
...+|.+-.|.++.+ ++.++. ....+++|..|.+++++....+
T Consensus 220 se~~p~~~~LnL~~~-~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l 265 (418)
T KOG2982|consen 220 SEPFPSLSCLNLGAN-NIDSWASVDALNGFPQLVDLRVSENPLSDPL 265 (418)
T ss_pred CCCCCcchhhhhccc-ccccHHHHHHHcCCchhheeeccCCcccccc
Confidence 445666666777665 333332 2344666666666666554443
No 58
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.19 E-value=0.00023 Score=82.52 Aligned_cols=89 Identities=25% Similarity=0.315 Sum_probs=39.1
Q ss_pred CCcccccc-CCCcccEEEecCccccc--cCccccCCCcccEEecCCCCCcccchhHhhcccCcEEecCCCcchhhc--hH
Q 048004 167 PSILPKLL-KPQRLRAFSLRGYYIFE--LPDSVGDLRYLRYLNLCGTKIRTLPESVNKLYNLHSLLLEDCDRLKKL--CA 241 (943)
Q Consensus 167 ~~~~~~~~-~l~~L~~L~L~~~~i~~--lp~~~~~L~~L~~L~L~~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~l--p~ 241 (943)
..++..+. .+|.||.|.+.|-.+.. +-.-..++++|+.||+|+++|+.+ ..|++|++|++|.+++ -.+..- -.
T Consensus 137 ~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L~mrn-Le~e~~~~l~ 214 (699)
T KOG3665|consen 137 NGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVLSMRN-LEFESYQDLI 214 (699)
T ss_pred ccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHHhccC-CCCCchhhHH
Confidence 33444444 45555555555433211 111223445555555555555555 4455555555555543 111111 11
Q ss_pred hhcccccccccccCCC
Q 048004 242 DMGNLAKLHHLKNSNT 257 (943)
Q Consensus 242 ~~~~L~~L~~L~l~~~ 257 (943)
++-+|++|++||+|..
T Consensus 215 ~LF~L~~L~vLDIS~~ 230 (699)
T KOG3665|consen 215 DLFNLKKLRVLDISRD 230 (699)
T ss_pred HHhcccCCCeeecccc
Confidence 3444555555555543
No 59
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.16 E-value=0.00028 Score=81.73 Aligned_cols=135 Identities=19% Similarity=0.260 Sum_probs=81.1
Q ss_pred CcccEEecCCCCC-c-ccchhH-hhcccCcEEecCCCcchh--hchHhhcccccccccccCCCCccccCCcccCCccccc
Q 048004 200 RYLRYLNLCGTKI-R-TLPESV-NKLYNLHSLLLEDCDRLK--KLCADMGNLAKLHHLKNSNTKSLEEMPVGIGKLTSLQ 274 (943)
Q Consensus 200 ~~L~~L~L~~n~i-~-~lp~~i-~~L~~L~~L~L~~~~~l~--~lp~~~~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~ 274 (943)
.+|++||++|... . .-|..+ ..||.|+.|.+++ ..+. ..-.-..++++|+.||+++++ +..+ .||++|++||
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~-~~~~~~dF~~lc~sFpNL~sLDIS~Tn-I~nl-~GIS~LknLq 198 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISG-RQFDNDDFSQLCASFPNLRSLDISGTN-ISNL-SGISRLKNLQ 198 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecC-ceecchhHHHHhhccCccceeecCCCC-ccCc-HHHhccccHH
Confidence 6788888888543 2 345556 4589999999987 3332 222334678899999999988 6666 6799999999
Q ss_pred cccceeeccCCCCCchhhhcccccCCeeeeccccccCCcccchhhhcCCCCCCCeEEEEeecCCCCCCCcchhcHHhhhc
Q 048004 275 TLCNFVVGKGSGSGLRELKLLTHLHGTLNISKLENVKCVGDAMEAQMDGKKNLKELSLKWTCSTDGSSSREAETEMGVLD 354 (943)
Q Consensus 275 ~L~~~~~~~~~~~~l~~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~ 354 (943)
+|........+...+.+ +..+++|+.|+++..... .....-...++
T Consensus 199 ~L~mrnLe~e~~~~l~~-----------------------------LF~L~~L~vLDIS~~~~~-----~~~~ii~qYle 244 (699)
T KOG3665|consen 199 VLSMRNLEFESYQDLID-----------------------------LFNLKKLRVLDISRDKNN-----DDTKIIEQYLE 244 (699)
T ss_pred HHhccCCCCCchhhHHH-----------------------------HhcccCCCeeeccccccc-----cchHHHHHHHH
Confidence 98544433333222332 444566666666642111 11112223345
Q ss_pred cCCCCCCcceEEEeccC
Q 048004 355 MLKPHTNLEQFCIKGYG 371 (943)
Q Consensus 355 ~l~~~~~L~~L~l~~~~ 371 (943)
.-..+++|+.|+.+|..
T Consensus 245 c~~~LpeLrfLDcSgTd 261 (699)
T KOG3665|consen 245 CGMVLPELRFLDCSGTD 261 (699)
T ss_pred hcccCccccEEecCCcc
Confidence 55556677777776544
No 60
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.13 E-value=0.00014 Score=71.29 Aligned_cols=205 Identities=12% Similarity=0.016 Sum_probs=113.4
Q ss_pred ccccccEEEeecCCCCC--CCCccccCccccceEEeccCCCccccCCcc-CCCCccEEEeccCCCCcccccccccCCCCC
Q 048004 589 LSCRLEYLTLSGCQGLV--KLPQSSLSLNSLREIEIYKCSSLVSFPEVA-LPSKLKKIEIRECDALKSLPEAWMCGTNSS 665 (943)
Q Consensus 589 ~~~~L~~L~l~~~~~l~--~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~-~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~ 665 (943)
.++.++.+++.+|.... .+...+.++|.|+.|+++.|+.-..|.... -..+|+.|.+.+.. +..-....+...+|.
T Consensus 69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~-L~w~~~~s~l~~lP~ 147 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTG-LSWTQSTSSLDDLPK 147 (418)
T ss_pred HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCC-CChhhhhhhhhcchh
Confidence 33677778888776554 444556678888888888775544443322 34578888887732 221111112256677
Q ss_pred CCeEEEeecCCCccc-----cCccCCCCccEEEeccCCCccccccccccccCCCCCCCeeeeeccCCcccccccCCCCCC
Q 048004 666 LEILSIQGCHSLTYI-----AGVQLPPSLKRLEIDFCDNLRTLTVEEGIQSSSSSSSSSRSIWTCENLKFLPSGLHNLRQ 740 (943)
Q Consensus 666 L~~L~l~~~~~l~~~-----~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~~~L~~l~l~~~~~l~~lp~~~~~l~~ 740 (943)
+++|.++.|. .+.+ ......+.+.+++...|.-..... .+.. -..+|+
T Consensus 148 vtelHmS~N~-~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~--~~~l------------------------~r~Fpn 200 (418)
T KOG2982|consen 148 VTELHMSDNS-LRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLN--KNKL------------------------SRIFPN 200 (418)
T ss_pred hhhhhhccch-hhhhccccccccccchhhhhhhcCCcHHHHHHH--HHhH------------------------Hhhccc
Confidence 7788887774 1111 111222334444444443222211 1111 123677
Q ss_pred cCeEeecCCCCceecC-CCCCCCCCcceEeecccCCCCc-cccccCCCCccceEEecCCCchhhhhhhhc--cccCCCCC
Q 048004 741 LQEIEIWECENLVSFP-QGGLPCAKLSMLTVYGCERLKA-LPKGLHNLTNLHSLEIHGNTKIWKSMIEWG--RGFHRFSS 816 (943)
Q Consensus 741 L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~-~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~--~~~~~l~~ 816 (943)
+..+.+..|+.-..-. .+.-++|.+.-|+++.+++-.. --..+.++++|..|.++++|.......... -.++++++
T Consensus 201 v~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~ 280 (418)
T KOG2982|consen 201 VNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTK 280 (418)
T ss_pred chheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccc
Confidence 7777777776543332 2344566777788887765221 013467888899999988886653322211 12566777
Q ss_pred cCEEE
Q 048004 817 LRELK 821 (943)
Q Consensus 817 L~~L~ 821 (943)
++.|+
T Consensus 281 v~vLN 285 (418)
T KOG2982|consen 281 VQVLN 285 (418)
T ss_pred eEEec
Confidence 77776
No 61
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.06 E-value=0.0007 Score=62.90 Aligned_cols=103 Identities=24% Similarity=0.238 Sum_probs=78.1
Q ss_pred CCcccEEEecCccccccCccccCCCcccEEecCCCCCcccchhH-hhcccCcEEecCCCcchhhchH--hhccccccccc
Q 048004 176 PQRLRAFSLRGYYIFELPDSVGDLRYLRYLNLCGTKIRTLPESV-NKLYNLHSLLLEDCDRLKKLCA--DMGNLAKLHHL 252 (943)
Q Consensus 176 l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~L~~n~i~~lp~~i-~~L~~L~~L~L~~~~~l~~lp~--~~~~L~~L~~L 252 (943)
......+||++|.+..++ .|..+.+|.+|.|..|+|+.+-..+ ..+++|+.|.|.+| .+.++-+ .+..+++|++|
T Consensus 41 ~d~~d~iDLtdNdl~~l~-~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnN-si~~l~dl~pLa~~p~L~~L 118 (233)
T KOG1644|consen 41 LDQFDAIDLTDNDLRKLD-NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNN-SIQELGDLDPLASCPKLEYL 118 (233)
T ss_pred ccccceecccccchhhcc-cCCCccccceEEecCCcceeeccchhhhccccceEEecCc-chhhhhhcchhccCCcccee
Confidence 345678899999987774 4788999999999999999987777 45678999999984 5555431 36788899999
Q ss_pred ccCCCCccccCCcc----cCCccccccccceee
Q 048004 253 KNSNTKSLEEMPVG----IGKLTSLQTLCNFVV 281 (943)
Q Consensus 253 ~l~~~~~~~~~p~~----i~~L~~L~~L~~~~~ 281 (943)
.+-+|. ....+.. +.++++|++|+...+
T Consensus 119 tll~Np-v~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 119 TLLGNP-VEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred eecCCc-hhcccCceeEEEEecCcceEeehhhh
Confidence 998887 5544432 788888888854443
No 62
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.66 E-value=0.0011 Score=64.67 Aligned_cols=105 Identities=23% Similarity=0.198 Sum_probs=62.9
Q ss_pred CCCcccEEEecCccccccCccccCCCcccEEecCCC--CCc-ccchhHhhcccCcEEecCCCcchhhch--Hhhcccccc
Q 048004 175 KPQRLRAFSLRGYYIFELPDSVGDLRYLRYLNLCGT--KIR-TLPESVNKLYNLHSLLLEDCDRLKKLC--ADMGNLAKL 249 (943)
Q Consensus 175 ~l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~L~~n--~i~-~lp~~i~~L~~L~~L~L~~~~~l~~lp--~~~~~L~~L 249 (943)
.+..|..|++.+..++++ ..+..|++|++|+++.| ++. .++--..++++|++|++++| .++.+. ....++.+|
T Consensus 41 ~~~~le~ls~~n~gltt~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~N-ki~~lstl~pl~~l~nL 118 (260)
T KOG2739|consen 41 EFVELELLSVINVGLTTL-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGN-KIKDLSTLRPLKELENL 118 (260)
T ss_pred cccchhhhhhhccceeec-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCC-ccccccccchhhhhcch
Confidence 455666666666665554 34556778888888887 444 55544555688888888874 333211 135667777
Q ss_pred cccccCCCCccccCCcc----cCCccccccccceeec
Q 048004 250 HHLKNSNTKSLEEMPVG----IGKLTSLQTLCNFVVG 282 (943)
Q Consensus 250 ~~L~l~~~~~~~~~p~~----i~~L~~L~~L~~~~~~ 282 (943)
..|++.+|. ...+-.. +.-+++|..|+.+.+.
T Consensus 119 ~~Ldl~n~~-~~~l~dyre~vf~ll~~L~~LD~~dv~ 154 (260)
T KOG2739|consen 119 KSLDLFNCS-VTNLDDYREKVFLLLPSLKYLDGCDVD 154 (260)
T ss_pred hhhhcccCC-ccccccHHHHHHHHhhhhccccccccC
Confidence 788887776 3333221 5556677777555443
No 63
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.50 E-value=0.00095 Score=38.34 Aligned_cols=19 Identities=37% Similarity=0.847 Sum_probs=9.4
Q ss_pred ccEEecCCCCCcccchhHh
Q 048004 202 LRYLNLCGTKIRTLPESVN 220 (943)
Q Consensus 202 L~~L~L~~n~i~~lp~~i~ 220 (943)
|++|||++|+++.+|.+|+
T Consensus 2 L~~Ldls~n~l~~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSSFS 20 (22)
T ss_dssp ESEEEETSSEESEEGTTTT
T ss_pred ccEEECCCCcCEeCChhhc
Confidence 4555555555555554443
No 64
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.36 E-value=0.00039 Score=67.56 Aligned_cols=102 Identities=21% Similarity=0.251 Sum_probs=57.3
Q ss_pred CcccEEEecCccccccCccccCCCcccEEecCCCCCcccchhHhhcccCcEEecCCCcchhhchH--hhccccccccccc
Q 048004 177 QRLRAFSLRGYYIFELPDSVGDLRYLRYLNLCGTKIRTLPESVNKLYNLHSLLLEDCDRLKKLCA--DMGNLAKLHHLKN 254 (943)
Q Consensus 177 ~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~L~~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~--~~~~L~~L~~L~l 254 (943)
.+.+-|++.||.+..| .-..+++.|++|.||-|.|+.| +.+..+++|+.|.|+.| .+..+-+ -+.++++|+.|.|
T Consensus 19 ~~vkKLNcwg~~L~DI-sic~kMp~lEVLsLSvNkIssL-~pl~rCtrLkElYLRkN-~I~sldEL~YLknlpsLr~LWL 95 (388)
T KOG2123|consen 19 ENVKKLNCWGCGLDDI-SICEKMPLLEVLSLSVNKISSL-APLQRCTRLKELYLRKN-CIESLDELEYLKNLPSLRTLWL 95 (388)
T ss_pred HHhhhhcccCCCccHH-HHHHhcccceeEEeeccccccc-hhHHHHHHHHHHHHHhc-ccccHHHHHHHhcCchhhhHhh
Confidence 3445556666665554 2234566666666666666666 44566666666666663 3433321 2456777777777
Q ss_pred CCCCccccCCcc-----cCCccccccccceee
Q 048004 255 SNTKSLEEMPVG-----IGKLTSLQTLCNFVV 281 (943)
Q Consensus 255 ~~~~~~~~~p~~-----i~~L~~L~~L~~~~~ 281 (943)
..|.-...-+.. +.-|++|+.|++..+
T Consensus 96 ~ENPCc~~ag~nYR~~VLR~LPnLkKLDnv~V 127 (388)
T KOG2123|consen 96 DENPCCGEAGQNYRRKVLRVLPNLKKLDNVPV 127 (388)
T ss_pred ccCCcccccchhHHHHHHHHcccchhccCccc
Confidence 766533333321 455666666654433
No 65
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.30 E-value=0.0017 Score=63.06 Aligned_cols=84 Identities=23% Similarity=0.216 Sum_probs=48.9
Q ss_pred CCCcccEEEecCccccc-----cCccccCCCcccEEecCCCCCc----ccchh-------HhhcccCcEEecCCCcchhh
Q 048004 175 KPQRLRAFSLRGYYIFE-----LPDSVGDLRYLRYLNLCGTKIR----TLPES-------VNKLYNLHSLLLEDCDRLKK 238 (943)
Q Consensus 175 ~l~~L~~L~L~~~~i~~-----lp~~~~~L~~L~~L~L~~n~i~----~lp~~-------i~~L~~L~~L~L~~~~~l~~ 238 (943)
.+..+..++|+||.|+. +...|.+-++|++-+++.-... ++|++ +-++++|+..+||.|-.-..
T Consensus 28 ~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~ 107 (388)
T COG5238 28 MMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSE 107 (388)
T ss_pred hhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcc
Confidence 56677778888887643 3345556677777777753211 33332 33456666666666544333
Q ss_pred chHh----hcccccccccccCCCC
Q 048004 239 LCAD----MGNLAKLHHLKNSNTK 258 (943)
Q Consensus 239 lp~~----~~~L~~L~~L~l~~~~ 258 (943)
.|.. |++-+.|.||.+++|.
T Consensus 108 ~~e~L~d~is~~t~l~HL~l~NnG 131 (388)
T COG5238 108 FPEELGDLISSSTDLVHLKLNNNG 131 (388)
T ss_pred cchHHHHHHhcCCCceeEEeecCC
Confidence 3332 4555666666666665
No 66
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.22 E-value=0.0037 Score=58.25 Aligned_cols=94 Identities=27% Similarity=0.436 Sum_probs=63.4
Q ss_pred ccEEEecCccccccCcccc-CCCcccEEecCCCCCcccchhHhhcccCcEEecCCCcchhhchHhhc-ccccccccccCC
Q 048004 179 LRAFSLRGYYIFELPDSVG-DLRYLRYLNLCGTKIRTLPESVNKLYNLHSLLLEDCDRLKKLCADMG-NLAKLHHLKNSN 256 (943)
Q Consensus 179 L~~L~L~~~~i~~lp~~~~-~L~~L~~L~L~~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~~~-~L~~L~~L~l~~ 256 (943)
=+.++|.+.++..+-. ++ -+.+...+||++|.+..++ .+..++.|.+|.+.+| .+..+-+.+. .+++|..|.+.+
T Consensus 21 e~e~~LR~lkip~ien-lg~~~d~~d~iDLtdNdl~~l~-~lp~l~rL~tLll~nN-rIt~I~p~L~~~~p~l~~L~Ltn 97 (233)
T KOG1644|consen 21 ERELDLRGLKIPVIEN-LGATLDQFDAIDLTDNDLRKLD-NLPHLPRLHTLLLNNN-RITRIDPDLDTFLPNLKTLILTN 97 (233)
T ss_pred ccccccccccccchhh-ccccccccceecccccchhhcc-cCCCccccceEEecCC-cceeeccchhhhccccceEEecC
Confidence 4566777776644422 22 2356788999999998774 4678999999999985 5555544554 567899999999
Q ss_pred CCccccCCc--ccCCccccccc
Q 048004 257 TKSLEEMPV--GIGKLTSLQTL 276 (943)
Q Consensus 257 ~~~~~~~p~--~i~~L~~L~~L 276 (943)
|. +..+-+ .+..+++|+.|
T Consensus 98 Ns-i~~l~dl~pLa~~p~L~~L 118 (233)
T KOG1644|consen 98 NS-IQELGDLDPLASCPKLEYL 118 (233)
T ss_pred cc-hhhhhhcchhccCCcccee
Confidence 87 555432 24445555555
No 67
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.84 E-value=0.0055 Score=35.16 Aligned_cols=22 Identities=27% Similarity=0.504 Sum_probs=18.8
Q ss_pred cccEEEecCccccccCccccCC
Q 048004 178 RLRAFSLRGYYIFELPDSVGDL 199 (943)
Q Consensus 178 ~L~~L~L~~~~i~~lp~~~~~L 199 (943)
+|++||+++|.++.+|++|++|
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~l 22 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSNL 22 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT-
T ss_pred CccEEECCCCcCEeCChhhcCC
Confidence 5899999999999999888764
No 68
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.30 E-value=0.0021 Score=62.66 Aligned_cols=79 Identities=25% Similarity=0.222 Sum_probs=64.8
Q ss_pred CCCcccEEEecCccccccCccccCCCcccEEecCCCCCcccc--hhHhhcccCcEEecCCCcchhhchH-----hhcccc
Q 048004 175 KPQRLRAFSLRGYYIFELPDSVGDLRYLRYLNLCGTKIRTLP--ESVNKLYNLHSLLLEDCDRLKKLCA-----DMGNLA 247 (943)
Q Consensus 175 ~l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~L~~n~i~~lp--~~i~~L~~L~~L~L~~~~~l~~lp~-----~~~~L~ 247 (943)
+|+.|.||.|+-|.|+++ ..+..+++|+.|.|+.|.|..+. .-+.+|++|++|-|..|.-...-+. .+.-|+
T Consensus 39 kMp~lEVLsLSvNkIssL-~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LP 117 (388)
T KOG2123|consen 39 KMPLLEVLSLSVNKISSL-APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLP 117 (388)
T ss_pred hcccceeEEeeccccccc-hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCCcccccchhHHHHHHHHcc
Confidence 899999999999999998 45888999999999999999885 3458999999999998755544433 256788
Q ss_pred ccccccc
Q 048004 248 KLHHLKN 254 (943)
Q Consensus 248 ~L~~L~l 254 (943)
+|+.||-
T Consensus 118 nLkKLDn 124 (388)
T KOG2123|consen 118 NLKKLDN 124 (388)
T ss_pred cchhccC
Confidence 8888873
No 69
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=95.03 E-value=0.0015 Score=61.97 Aligned_cols=83 Identities=13% Similarity=0.138 Sum_probs=66.7
Q ss_pred CCCcccEEEecCccccccCccccCCCcccEEecCCCCCcccchhHhhcccCcEEecCCCcchhhchHhhccccccccccc
Q 048004 175 KPQRLRAFSLRGYYIFELPDSVGDLRYLRYLNLCGTKIRTLPESVNKLYNLHSLLLEDCDRLKKLCADMGNLAKLHHLKN 254 (943)
Q Consensus 175 ~l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~L~~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~~~~L~~L~~L~l 254 (943)
.++..++||++.|++..+-..|+.++.|..||++.|.|..+|+.++.+..++.+++.. +.....|.++++++++++++.
T Consensus 40 ~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~-n~~~~~p~s~~k~~~~k~~e~ 118 (326)
T KOG0473|consen 40 SFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHK-NNHSQQPKSQKKEPHPKKNEQ 118 (326)
T ss_pred ccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhc-cchhhCCccccccCCcchhhh
Confidence 5577788888888877777777778888888888888888888888888888888876 567778888888888888888
Q ss_pred CCCC
Q 048004 255 SNTK 258 (943)
Q Consensus 255 ~~~~ 258 (943)
-.+.
T Consensus 119 k~~~ 122 (326)
T KOG0473|consen 119 KKTE 122 (326)
T ss_pred ccCc
Confidence 7776
No 70
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=94.95 E-value=0.015 Score=30.82 Aligned_cols=16 Identities=38% Similarity=0.729 Sum_probs=6.5
Q ss_pred cccEEecCCCCCcccc
Q 048004 201 YLRYLNLCGTKIRTLP 216 (943)
Q Consensus 201 ~L~~L~L~~n~i~~lp 216 (943)
+|++|+|++|+++++|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 4555555555555544
No 71
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=94.87 E-value=0.0027 Score=60.25 Aligned_cols=87 Identities=16% Similarity=0.206 Sum_probs=77.4
Q ss_pred ccccC-ccccCCCcccEEecCCCCCcccchhHhhcccCcEEecCCCcchhhchHhhcccccccccccCCCCccccCCccc
Q 048004 189 IFELP-DSVGDLRYLRYLNLCGTKIRTLPESVNKLYNLHSLLLEDCDRLKKLCADMGNLAKLHHLKNSNTKSLEEMPVGI 267 (943)
Q Consensus 189 i~~lp-~~~~~L~~L~~L~L~~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~~~~L~~L~~L~l~~~~~~~~~p~~i 267 (943)
++.+| ..+.....-.+||++.|++..+-..++.++.|..||++. +.+..+|.+++.+..++++++..|. ....|.++
T Consensus 30 ~s~~~v~ei~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sk-nq~~~~~~d~~q~~e~~~~~~~~n~-~~~~p~s~ 107 (326)
T KOG0473|consen 30 LSEIPVREIASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSK-NQIKFLPKDAKQQRETVNAASHKNN-HSQQPKSQ 107 (326)
T ss_pred hcccchhhhhccceeeeehhhhhHHHhhccchHHHHHHHHHhccH-hhHhhChhhHHHHHHHHHHHhhccc-hhhCCccc
Confidence 44555 456778899999999999998888899999999999998 6899999999999999999998888 89999999
Q ss_pred CCcccccccc
Q 048004 268 GKLTSLQTLC 277 (943)
Q Consensus 268 ~~L~~L~~L~ 277 (943)
+++++++.++
T Consensus 108 ~k~~~~k~~e 117 (326)
T KOG0473|consen 108 KKEPHPKKNE 117 (326)
T ss_pred cccCCcchhh
Confidence 9999998883
No 72
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=94.35 E-value=0.26 Score=44.30 Aligned_cols=93 Identities=14% Similarity=0.188 Sum_probs=43.8
Q ss_pred cCCCCCCcCeEeecCCCCceecCC-CCCCCCCcceEeecccCCCCccccccCCCCccceEEecCCCchhhhhhhhccccC
Q 048004 734 GLHNLRQLQEIEIWECENLVSFPQ-GGLPCAKLSMLTVYGCERLKALPKGLHNLTNLHSLEIHGNTKIWKSMIEWGRGFH 812 (943)
Q Consensus 734 ~~~~l~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~ 812 (943)
.|.++++|+.+.+.. ....++. .+..+++|+.+.+.++ ....-...+.++++|+.+.+.++. . ..+.. .|.
T Consensus 7 ~F~~~~~l~~i~~~~--~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~~~-~--~i~~~--~F~ 78 (129)
T PF13306_consen 7 AFYNCSNLESITFPN--TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPNNL-K--SIGDN--AFS 78 (129)
T ss_dssp TTTT-TT--EEEETS--T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETSTT----EE-TT--TTT
T ss_pred HHhCCCCCCEEEECC--CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccccc-c--ccccc--ccc
Confidence 456677788888764 2444443 3556667888887763 322223355667677777775431 1 11121 266
Q ss_pred CCCCcCEEEEeecCCCceecCCCcc
Q 048004 813 RFSSLRELKISRCDDDMVSFPPEDI 837 (943)
Q Consensus 813 ~l~~L~~L~ls~n~~~~~~~~~~~~ 837 (943)
.+++|+.+++..+ +..++...|
T Consensus 79 ~~~~l~~i~~~~~---~~~i~~~~f 100 (129)
T PF13306_consen 79 NCTNLKNIDIPSN---ITEIGSSSF 100 (129)
T ss_dssp T-TTECEEEETTT----BEEHTTTT
T ss_pred ccccccccccCcc---ccEEchhhh
Confidence 6777777777542 444444443
No 73
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=94.30 E-value=0.014 Score=57.21 Aligned_cols=84 Identities=23% Similarity=0.217 Sum_probs=55.3
Q ss_pred cccCCCcccEEecCCCCCcccchhHhhcccCcEEecCCC--cchhhchHhhcccccccccccCCCCccccCCcc---cCC
Q 048004 195 SVGDLRYLRYLNLCGTKIRTLPESVNKLYNLHSLLLEDC--DRLKKLCADMGNLAKLHHLKNSNTKSLEEMPVG---IGK 269 (943)
Q Consensus 195 ~~~~L~~L~~L~L~~n~i~~lp~~i~~L~~L~~L~L~~~--~~l~~lp~~~~~L~~L~~L~l~~~~~~~~~p~~---i~~ 269 (943)
-.-.+..|+.|++.+..++++ ..+-.|++|+.|+++.| .....++.-..++++|++|++++|+ ++. +.. ...
T Consensus 38 l~d~~~~le~ls~~n~gltt~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nk-i~~-lstl~pl~~ 114 (260)
T KOG2739|consen 38 LTDEFVELELLSVINVGLTTL-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNK-IKD-LSTLRPLKE 114 (260)
T ss_pred ccccccchhhhhhhccceeec-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCc-ccc-ccccchhhh
Confidence 344556677777777666655 34557899999999997 3444555455677999999999998 443 333 344
Q ss_pred ccccccccceee
Q 048004 270 LTSLQTLCNFVV 281 (943)
Q Consensus 270 L~~L~~L~~~~~ 281 (943)
+.+|..|+.+.+
T Consensus 115 l~nL~~Ldl~n~ 126 (260)
T KOG2739|consen 115 LENLKSLDLFNC 126 (260)
T ss_pred hcchhhhhcccC
Confidence 444445544443
No 74
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=93.84 E-value=0.11 Score=46.72 Aligned_cols=116 Identities=9% Similarity=0.207 Sum_probs=47.0
Q ss_pred cccCCCCcceeeeecccCCCCCCCCCCcccccc-CCCcccEEEecCccccccC-ccccCCCcccEEecCCCCCcccc-hh
Q 048004 142 DLYDIQHLRTFLPVMLTNSRPGFLAPSILPKLL-KPQRLRAFSLRGYYIFELP-DSVGDLRYLRYLNLCGTKIRTLP-ES 218 (943)
Q Consensus 142 ~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~-~l~~L~~L~L~~~~i~~lp-~~~~~L~~L~~L~L~~n~i~~lp-~~ 218 (943)
.+.++.+|+.+.+... ...+....| .++.|+.+.+.++ +..++ ..|.+...|+.+.+.. .+..++ ..
T Consensus 7 ~F~~~~~l~~i~~~~~--------~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~ 76 (129)
T PF13306_consen 7 AFYNCSNLESITFPNT--------IKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNA 76 (129)
T ss_dssp TTTT-TT--EEEETST----------EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTT
T ss_pred HHhCCCCCCEEEECCC--------eeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccc
Confidence 3455556666543221 224445555 5556777776653 55554 3456666677777754 455554 33
Q ss_pred HhhcccCcEEecCCCcchhhchH-hhcccccccccccCCCCccccCCcc-cCCccc
Q 048004 219 VNKLYNLHSLLLEDCDRLKKLCA-DMGNLAKLHHLKNSNTKSLEEMPVG-IGKLTS 272 (943)
Q Consensus 219 i~~L~~L~~L~L~~~~~l~~lp~-~~~~L~~L~~L~l~~~~~~~~~p~~-i~~L~~ 272 (943)
+...++|+.+++..+ +..++. .|.+. +|+.+.+..+ +..++.. +.+.++
T Consensus 77 F~~~~~l~~i~~~~~--~~~i~~~~f~~~-~l~~i~~~~~--~~~i~~~~F~~~~~ 127 (129)
T PF13306_consen 77 FSNCTNLKNIDIPSN--ITEIGSSSFSNC-NLKEINIPSN--ITKIEENAFKNCTK 127 (129)
T ss_dssp TTT-TTECEEEETTT---BEEHTTTTTT--T--EEE-TTB---SS----GGG----
T ss_pred ccccccccccccCcc--ccEEchhhhcCC-CceEEEECCC--ccEECCcccccccc
Confidence 455667777776542 344432 35554 6666665542 3444433 443333
No 75
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=93.75 E-value=0.014 Score=56.94 Aligned_cols=146 Identities=16% Similarity=0.069 Sum_probs=90.0
Q ss_pred cccCCCCCCcCeEeecCCCCceecCCC----CCCCCCcceEeecccCCCCcccc--------------ccCCCCccceEE
Q 048004 732 PSGLHNLRQLQEIEIWECENLVSFPQG----GLPCAKLSMLTVYGCERLKALPK--------------GLHNLTNLHSLE 793 (943)
Q Consensus 732 p~~~~~l~~L~~L~l~~~~~~~~~~~~----~~~l~~L~~L~l~~~~~~~~~~~--------------~l~~l~~L~~L~ 793 (943)
...+..||.|+..++|+|.+-..+|+. ++.-+.|+.|.+++|.. |.+.. -..+-|.|+...
T Consensus 85 l~aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGl-Gp~aG~rigkal~~la~nKKaa~kp~Le~vi 163 (388)
T COG5238 85 LKALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGL-GPIAGGRIGKALFHLAYNKKAADKPKLEVVI 163 (388)
T ss_pred HHHHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCC-CccchhHHHHHHHHHHHHhhhccCCCceEEE
Confidence 345667899999999999877666654 34557899999998854 33322 134567888888
Q ss_pred ecCCCchhhhhhhhccccCCCCCcCEEEEeecCCCceecCCCccccCCCCCCCCccceeeccCCCCCcc----ccccccc
Q 048004 794 IHGNTKIWKSMIEWGRGFHRFSSLRELKISRCDDDMVSFPPEDIRLGTTLPLPASLTSLEIGYFPNLER----LSSSIVD 869 (943)
Q Consensus 794 l~~n~~~~~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~----l~~~~~~ 869 (943)
...|..-..+...|...+..-..|+++.+-.|...-+.+.--. ......+.+|+.|++.++..... +...+..
T Consensus 164 cgrNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~---~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~ 240 (388)
T COG5238 164 CGRNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLA---FLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCE 240 (388)
T ss_pred eccchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHH---HHHHHHhCcceeeeccccchhhhhHHHHHHHhcc
Confidence 8888766655555555566667888888888721111000000 01123577888888888542221 1112234
Q ss_pred CCCCCeEEEcCC
Q 048004 870 LQNLTSLFLYHC 881 (943)
Q Consensus 870 l~~L~~L~l~~c 881 (943)
.+.|+.|.+.+|
T Consensus 241 W~~lrEL~lnDC 252 (388)
T COG5238 241 WNLLRELRLNDC 252 (388)
T ss_pred cchhhhccccch
Confidence 455777777777
No 76
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=93.11 E-value=0.064 Score=28.44 Aligned_cols=17 Identities=29% Similarity=0.497 Sum_probs=11.5
Q ss_pred CcccEEEecCccccccC
Q 048004 177 QRLRAFSLRGYYIFELP 193 (943)
Q Consensus 177 ~~L~~L~L~~~~i~~lp 193 (943)
++||+|++++|+++++|
T Consensus 1 ~~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 1 PNLRTLDLSNNRLTSLP 17 (17)
T ss_dssp TT-SEEEETSS--SSE-
T ss_pred CccCEEECCCCCCCCCc
Confidence 47899999999998876
No 77
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=92.43 E-value=0.11 Score=31.18 Aligned_cols=21 Identities=33% Similarity=0.574 Sum_probs=15.5
Q ss_pred CCcccEEecCCCCCcccchhH
Q 048004 199 LRYLRYLNLCGTKIRTLPESV 219 (943)
Q Consensus 199 L~~L~~L~L~~n~i~~lp~~i 219 (943)
|++|++|+|++|+|+.+|..+
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHH
Confidence 467788888888888887553
No 78
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=92.43 E-value=0.11 Score=31.18 Aligned_cols=21 Identities=33% Similarity=0.574 Sum_probs=15.5
Q ss_pred CCcccEEecCCCCCcccchhH
Q 048004 199 LRYLRYLNLCGTKIRTLPESV 219 (943)
Q Consensus 199 L~~L~~L~L~~n~i~~lp~~i 219 (943)
|++|++|+|++|+|+.+|..+
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHH
Confidence 467788888888888887553
No 79
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.04 E-value=0.06 Score=50.57 Aligned_cols=83 Identities=13% Similarity=0.197 Sum_probs=44.8
Q ss_pred cccEEEeecCCCCCCCCccccCccccceEEeccCCCccccC--C-ccCCCCccEEEeccCCCCcccccccccCCCCCCCe
Q 048004 592 RLEYLTLSGCQGLVKLPQSSLSLNSLREIEIYKCSSLVSFP--E-VALPSKLKKIEIRECDALKSLPEAWMCGTNSSLEI 668 (943)
Q Consensus 592 ~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~~--~-~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~ 668 (943)
.++.++-+++.....-...+..+++++.|.+.+|..+.+.. . .+..++|+.|+|++|+.+++-..... ..+++|+.
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L-~~lknLr~ 180 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACL-LKLKNLRR 180 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHH-HHhhhhHH
Confidence 34445555444433333344556666677777766555432 1 12356666667766666666544433 45566666
Q ss_pred EEEeecC
Q 048004 669 LSIQGCH 675 (943)
Q Consensus 669 L~l~~~~ 675 (943)
|.+.+-+
T Consensus 181 L~l~~l~ 187 (221)
T KOG3864|consen 181 LHLYDLP 187 (221)
T ss_pred HHhcCch
Confidence 6665533
No 80
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.87 E-value=0.14 Score=48.28 Aligned_cols=41 Identities=29% Similarity=0.516 Sum_probs=23.9
Q ss_pred CCCccceeeccCCCCCcccc-cccccCCCCCeEEEcCCCCCC
Q 048004 845 LPASLTSLEIGYFPNLERLS-SSIVDLQNLTSLFLYHCPKLK 885 (943)
Q Consensus 845 ~l~~L~~L~l~~~~~l~~l~-~~~~~l~~L~~L~l~~c~~l~ 885 (943)
..++|+.|+|++|+.+++-- ..+..+++|+.|.+++.+.+.
T Consensus 149 ~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~l~~v~ 190 (221)
T KOG3864|consen 149 LAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYDLPYVA 190 (221)
T ss_pred cccchheeeccCCCeechhHHHHHHHhhhhHHHHhcCchhhh
Confidence 34566666666666666432 234566777777776654443
No 81
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=84.08 E-value=0.67 Score=27.76 Aligned_cols=21 Identities=24% Similarity=0.346 Sum_probs=17.9
Q ss_pred CCcccEEEecCccccccCccc
Q 048004 176 PQRLRAFSLRGYYIFELPDSV 196 (943)
Q Consensus 176 l~~L~~L~L~~~~i~~lp~~~ 196 (943)
+++|+.|+|++|.+..+|...
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHH
Confidence 468999999999999998653
No 82
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=84.08 E-value=0.67 Score=27.76 Aligned_cols=21 Identities=24% Similarity=0.346 Sum_probs=17.9
Q ss_pred CCcccEEEecCccccccCccc
Q 048004 176 PQRLRAFSLRGYYIFELPDSV 196 (943)
Q Consensus 176 l~~L~~L~L~~~~i~~lp~~~ 196 (943)
+++|+.|+|++|.+..+|...
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHH
Confidence 468999999999999998653
No 83
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=79.45 E-value=1.2 Score=26.59 Aligned_cols=18 Identities=33% Similarity=0.604 Sum_probs=13.6
Q ss_pred CcccEEecCCCCCcccch
Q 048004 200 RYLRYLNLCGTKIRTLPE 217 (943)
Q Consensus 200 ~~L~~L~L~~n~i~~lp~ 217 (943)
.+|++|+.++|+++++|+
T Consensus 2 ~~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 2 PSLKELNVSNNQLTSLPE 19 (26)
T ss_pred cccceeecCCCccccCcc
Confidence 357788888888888775
No 84
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=78.17 E-value=1.7 Score=26.08 Aligned_cols=17 Identities=35% Similarity=0.524 Sum_probs=11.7
Q ss_pred CCcccEEecCCCCCccc
Q 048004 199 LRYLRYLNLCGTKIRTL 215 (943)
Q Consensus 199 L~~L~~L~L~~n~i~~l 215 (943)
+++|++|+|++|.|+.+
T Consensus 1 L~~L~~L~L~~NkI~~I 17 (26)
T smart00365 1 LTNLEELDLSQNKIKKI 17 (26)
T ss_pred CCccCEEECCCCcccee
Confidence 35677777777777654
No 85
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=72.72 E-value=1.7 Score=25.38 Aligned_cols=13 Identities=31% Similarity=0.452 Sum_probs=5.0
Q ss_pred cccEEecCCCCCc
Q 048004 201 YLRYLNLCGTKIR 213 (943)
Q Consensus 201 ~L~~L~L~~n~i~ 213 (943)
+|++|+|++|.|+
T Consensus 3 ~L~~L~l~~n~i~ 15 (24)
T PF13516_consen 3 NLETLDLSNNQIT 15 (24)
T ss_dssp T-SEEE-TSSBEH
T ss_pred CCCEEEccCCcCC
Confidence 4444444444443
No 86
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=72.60 E-value=2.2 Score=25.50 Aligned_cols=12 Identities=33% Similarity=0.418 Sum_probs=5.1
Q ss_pred ccceeeecCCcc
Q 048004 895 SLLELIIYRCPL 906 (943)
Q Consensus 895 ~L~~L~i~~c~~ 906 (943)
+|+.|++++|+.
T Consensus 3 ~L~~L~l~~C~~ 14 (26)
T smart00367 3 NLRELDLSGCTN 14 (26)
T ss_pred CCCEeCCCCCCC
Confidence 344444444443
No 87
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=55.61 E-value=9 Score=23.42 Aligned_cols=14 Identities=36% Similarity=0.463 Sum_probs=9.6
Q ss_pred CcccEEecCCCCCc
Q 048004 200 RYLRYLNLCGTKIR 213 (943)
Q Consensus 200 ~~L~~L~L~~n~i~ 213 (943)
++|++|||++|.|.
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 45777777777665
No 88
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=51.38 E-value=0.16 Score=56.54 Aligned_cols=38 Identities=21% Similarity=0.281 Sum_probs=20.7
Q ss_pred ccccEEEeecCCCCC----CCCccccCccccceEEeccCCCc
Q 048004 591 CRLEYLTLSGCQGLV----KLPQSSLSLNSLREIEIYKCSSL 628 (943)
Q Consensus 591 ~~L~~L~l~~~~~l~----~l~~~~~~l~~L~~L~l~~~~~l 628 (943)
+.++.|++..|.... .+...+.....++.++++.|...
T Consensus 144 ~~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~ 185 (478)
T KOG4308|consen 144 CLLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLI 185 (478)
T ss_pred HHHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcccc
Confidence 345555555555443 23334444666777777766543
No 89
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=30.59 E-value=28 Score=38.72 Aligned_cols=31 Identities=19% Similarity=0.026 Sum_probs=16.7
Q ss_pred CccceeeccCCCCCccccc---c----cccCCCCCeEE
Q 048004 847 ASLTSLEIGYFPNLERLSS---S----IVDLQNLTSLF 877 (943)
Q Consensus 847 ~~L~~L~l~~~~~l~~l~~---~----~~~l~~L~~L~ 877 (943)
..|++|-+.|+|..+.+.. . ...||+|..||
T Consensus 270 l~Leel~l~GNPlc~tf~~~s~yv~~i~~~FPKL~~LD 307 (585)
T KOG3763|consen 270 LPLEELVLEGNPLCTTFSDRSEYVSAIRELFPKLLRLD 307 (585)
T ss_pred CCHHHeeecCCccccchhhhHHHHHHHHHhcchheeec
Confidence 3456666666665554321 1 13577777773
No 90
>PF05725 FNIP: FNIP Repeat; InterPro: IPR008615 This repeat is approximately 22 residues long and is only found in Dictyostelium discoideum (Slime mould). It appears to be related to IPR001611 from INTERPRO. The alignment consists of two tandem repeats. It is termed the FNIP repeat after the pattern of conserved residues.
Probab=27.51 E-value=1e+02 Score=21.28 Aligned_cols=31 Identities=35% Similarity=0.311 Sum_probs=14.6
Q ss_pred CCCCeEEEeecCCCccccCccCCCCccEEEec
Q 048004 664 SSLEILSIQGCHSLTYIAGVQLPPSLKRLEID 695 (943)
Q Consensus 664 ~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~ 695 (943)
.+++.|.+.++- -..+....+|+++++|.+.
T Consensus 12 ~~l~~L~~g~~f-n~~i~~~~lP~sl~~L~fg 42 (44)
T PF05725_consen 12 SSLKSLIFGSSF-NQPIEPGSLPNSLKSLSFG 42 (44)
T ss_pred CCCeEEEECCcc-CccCCCCccCCCceEEEee
Confidence 345555552211 2223344566666666554
No 91
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=23.98 E-value=53 Score=36.69 Aligned_cols=17 Identities=6% Similarity=0.098 Sum_probs=10.2
Q ss_pred CcchhhhhcCCCCCCCc
Q 048004 904 CPLIAEKCGKDGGQYWD 920 (943)
Q Consensus 904 c~~l~~~~~~~~~~~~~ 920 (943)
++.-.++|..++.|++.
T Consensus 549 n~~~s~~c~e~~nWdy~ 565 (585)
T KOG3763|consen 549 NSEWSTMCLEQNNWDYE 565 (585)
T ss_pred ChHHHHHHHHHccCCHH
Confidence 34455667777766554
No 92
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=22.24 E-value=24 Score=47.45 Aligned_cols=56 Identities=13% Similarity=-0.008 Sum_probs=35.4
Q ss_pred CCCCCCCCCCC--CcccceeeecCCcchhhhhcCCCCCCCccccCcceEEECCeeeeccccc
Q 048004 882 PKLKYFPEKGL--PSSLLELIIYRCPLIAEKCGKDGGQYWDLLTHIPHVAIDGKSIFGDKYS 941 (943)
Q Consensus 882 ~~l~~l~~~~~--~~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 941 (943)
++|+.|+.+.+ +++|+.|++++||. .|.|+..|...|+... .+.+.....+.|..|
T Consensus 5 N~LstLp~g~F~~L~sL~~LdLsgNPw---~CDC~L~WL~~WL~~~-~v~v~~~~~i~CasP 62 (2740)
T TIGR00864 5 NKISTIEEGICANLCNLSEIDLSGNPF---ECDCGLARLPRWAEEK-GVKVRQPEAALCAGP 62 (2740)
T ss_pred CcCCccChHHhccCCCceEEEeeCCcc---ccccccHHHHHHHHhc-CccccCCcccCCCCC
Confidence 56666766443 57888999999998 7888887755665443 233333333445544
No 93
>PRK04841 transcriptional regulator MalT; Provisional
Probab=21.63 E-value=1.4e+02 Score=37.34 Aligned_cols=72 Identities=18% Similarity=0.312 Sum_probs=51.1
Q ss_pred ccCCCcchhhhhhhhccCCCCceeChhhHHHHHHHcCCccCCCCCCcHHHHHHHHHHHHHhCCcccc-ccCCCCceehhh
Q 048004 13 YYYLPPTLKQCFAHCSLLPKDYEFEEEEIILLWCAAGFLDHKEDENPSEDLGRDFFKELCSRSFFQQ-SATDASLFVMHD 91 (943)
Q Consensus 13 Y~~L~~~lk~cfl~cslfpe~~~i~~~~Li~~wiaeG~i~~~~~~~~~~~~~~~~~~~L~~~~ll~~-~~~~~~~~~mHd 91 (943)
|+.||++.+..++..|+++ .++. ++... +... +.+...+++|.+++++.. .+++...|++|+
T Consensus 260 ~~~l~~~~~~~l~~~a~~~---~~~~-~l~~~-----l~~~--------~~~~~~L~~l~~~~l~~~~~~~~~~~yr~H~ 322 (903)
T PRK04841 260 LDNVDLETRHFLLRCSVLR---SMND-ALIVR-----VTGE--------ENGQMRLEELERQGLFIQRMDDSGEWFRYHP 322 (903)
T ss_pred HhcCCHHHHHHHHHhcccc---cCCH-HHHHH-----HcCC--------CcHHHHHHHHHHCCCeeEeecCCCCEEehhH
Confidence 7899999999999999987 3442 33221 1111 114678999999999764 344456789999
Q ss_pred HHHHHHHHhc
Q 048004 92 LINDLARWAA 101 (943)
Q Consensus 92 lv~dla~~i~ 101 (943)
++|++.+.-.
T Consensus 323 L~r~~l~~~l 332 (903)
T PRK04841 323 LFASFLRHRC 332 (903)
T ss_pred HHHHHHHHHH
Confidence 9999998754
Done!