Query 048004
Match_columns 943
No_of_seqs 679 out of 4223
Neff 10.5
Searched_HMMs 29240
Date Mon Mar 25 08:56:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048004.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/048004hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 1.3E-51 4.3E-56 495.9 29.2 636 169-929 69-766 (768)
2 3rgz_A Protein brassinosteroid 100.0 1.1E-47 3.7E-52 461.7 29.2 648 141-884 71-740 (768)
3 1ziw_A TOLL-like receptor 3; i 100.0 3.9E-44 1.3E-48 428.0 39.1 481 384-941 144-654 (680)
4 1ziw_A TOLL-like receptor 3; i 100.0 5.6E-41 1.9E-45 400.7 33.9 563 177-886 25-624 (680)
5 3vq2_A TLR4, TOLL-like recepto 100.0 2E-40 6.7E-45 390.6 33.9 301 591-941 285-588 (606)
6 3t6q_A CD180 antigen; protein- 100.0 1.3E-40 4.6E-45 392.0 29.5 195 732-941 393-590 (606)
7 3t6q_A CD180 antigen; protein- 100.0 2E-38 6.9E-43 373.4 28.5 507 178-825 34-557 (606)
8 3vq2_A TLR4, TOLL-like recepto 100.0 2.6E-38 9E-43 372.4 26.4 201 177-416 32-237 (606)
9 3j0a_A TOLL-like receptor 5; m 100.0 9.5E-37 3.3E-41 370.5 33.5 513 176-883 23-559 (844)
10 2z63_A TOLL-like receptor 4, v 100.0 2.3E-34 8E-39 336.6 32.6 283 592-924 258-546 (570)
11 3j0a_A TOLL-like receptor 5; m 100.0 3E-33 1E-37 339.8 35.4 515 145-825 22-557 (844)
12 2z81_A CD282 antigen, TOLL-lik 100.0 1.5E-33 5E-38 327.8 30.7 106 168-276 19-128 (549)
13 2z81_A CD282 antigen, TOLL-lik 100.0 1.6E-33 5.5E-38 327.5 29.8 95 179-276 7-103 (549)
14 2z7x_B TOLL-like receptor 1, v 100.0 3.6E-33 1.2E-37 321.8 26.1 219 591-882 247-479 (520)
15 2z63_A TOLL-like receptor 4, v 100.0 6.5E-33 2.2E-37 324.3 27.3 98 178-276 29-129 (570)
16 4g8a_A TOLL-like receptor 4; l 100.0 2.7E-32 9.3E-37 324.1 31.7 210 715-942 397-611 (635)
17 4eco_A Uncharacterized protein 100.0 1.8E-33 6.1E-38 329.9 17.6 341 375-857 239-597 (636)
18 4eco_A Uncharacterized protein 100.0 5E-33 1.7E-37 326.1 19.8 68 209-276 192-278 (636)
19 4ecn_A Leucine-rich repeat pro 100.0 1.6E-32 5.3E-37 325.7 21.6 66 211-276 436-520 (876)
20 4ecn_A Leucine-rich repeat pro 100.0 1.9E-31 6.3E-36 316.6 24.3 342 375-858 481-838 (876)
21 4g8a_A TOLL-like receptor 4; l 100.0 6.8E-31 2.3E-35 312.1 28.3 100 177-278 52-155 (635)
22 2z7x_B TOLL-like receptor 1, v 100.0 3.9E-31 1.3E-35 304.8 25.1 92 180-276 3-95 (520)
23 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 4.1E-30 1.4E-34 298.6 25.4 61 739-801 450-511 (562)
24 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 4.2E-29 1.4E-33 290.1 27.1 96 176-276 30-126 (562)
25 1jl5_A Outer protein YOPM; leu 100.0 5E-29 1.7E-33 278.6 21.3 79 175-265 9-88 (454)
26 1jl5_A Outer protein YOPM; leu 100.0 9.5E-29 3.2E-33 276.4 20.2 132 739-906 297-428 (454)
27 3bz5_A Internalin-J, INLJ; leu 100.0 3.7E-28 1.3E-32 271.9 17.4 96 172-276 37-132 (457)
28 3v47_A TOLL-like receptor 5B a 99.9 1.2E-26 4E-31 262.8 26.4 36 384-419 128-165 (455)
29 3v47_A TOLL-like receptor 5B a 99.9 1.9E-26 6.6E-31 261.0 25.1 137 739-888 275-412 (455)
30 3bz5_A Internalin-J, INLJ; leu 99.9 4.2E-26 1.5E-30 255.1 22.2 77 193-276 35-111 (457)
31 1o6v_A Internalin A; bacterial 99.9 1E-25 3.5E-30 254.9 24.2 78 591-675 309-386 (466)
32 1o6v_A Internalin A; bacterial 99.9 3.4E-25 1.2E-29 250.6 24.4 85 175-264 44-128 (466)
33 2id5_A Lingo-1, leucine rich r 99.9 1.8E-23 6E-28 237.9 28.8 323 365-807 16-340 (477)
34 2id5_A Lingo-1, leucine rich r 99.9 8.9E-24 3E-28 240.3 26.1 137 733-882 194-331 (477)
35 4fmz_A Internalin; leucine ric 99.9 2.2E-23 7.6E-28 226.4 23.0 235 592-906 111-345 (347)
36 4fmz_A Internalin; leucine ric 99.9 9.6E-24 3.3E-28 229.3 19.8 96 175-276 42-137 (347)
37 3oja_B Anopheles plasmodium-re 99.9 1.7E-23 5.9E-28 243.9 22.0 90 175-265 49-140 (597)
38 3o6n_A APL1; leucine-rich repe 99.9 1.8E-23 6.2E-28 230.8 20.7 101 175-276 43-146 (390)
39 3o6n_A APL1; leucine-rich repe 99.9 9.6E-23 3.3E-27 225.0 24.9 306 505-906 44-351 (390)
40 3oja_B Anopheles plasmodium-re 99.9 6.1E-22 2.1E-26 230.8 22.0 256 592-906 100-357 (597)
41 4fcg_A Uncharacterized protein 99.9 4.8E-22 1.6E-26 212.5 14.2 232 175-539 79-310 (328)
42 1ogq_A PGIP-2, polygalacturona 99.9 2.6E-22 9E-27 213.3 12.0 250 591-907 50-304 (313)
43 1xku_A Decorin; proteoglycan, 99.9 2.7E-21 9.2E-26 208.0 19.8 289 178-567 32-328 (330)
44 2ft3_A Biglycan; proteoglycan, 99.9 1.2E-20 4.2E-25 203.0 24.3 137 739-882 193-331 (332)
45 2ft3_A Biglycan; proteoglycan, 99.9 2E-21 6.8E-26 209.2 17.5 289 178-568 34-330 (332)
46 1xku_A Decorin; proteoglycan, 99.9 3.6E-20 1.2E-24 199.2 25.4 136 739-881 192-329 (330)
47 4fcg_A Uncharacterized protein 99.9 2.2E-21 7.5E-26 207.4 13.9 123 146-276 80-211 (328)
48 3ogk_B Coronatine-insensitive 99.8 3.2E-22 1.1E-26 234.7 6.6 375 461-886 110-527 (592)
49 3ogk_B Coronatine-insensitive 99.8 8.6E-22 2.9E-26 231.0 4.5 161 505-674 377-548 (592)
50 1z7x_W Ribonuclease inhibitor; 99.8 1.5E-22 5.3E-27 229.4 -2.2 363 506-882 3-409 (461)
51 1z7x_W Ribonuclease inhibitor; 99.8 1.8E-22 6.1E-27 228.9 -4.5 182 486-675 86-295 (461)
52 1ogq_A PGIP-2, polygalacturona 99.8 2.2E-20 7.6E-25 198.4 11.4 86 734-825 193-278 (313)
53 3zyj_A Leucine-rich repeat-con 99.8 5.5E-19 1.9E-23 198.0 20.0 171 734-923 131-305 (440)
54 2z66_A Variable lymphocyte rec 99.8 1.7E-19 5.7E-24 191.8 13.3 182 731-928 93-279 (306)
55 3zyi_A Leucine-rich repeat-con 99.8 8.4E-19 2.9E-23 197.2 19.7 165 735-917 143-310 (452)
56 2z80_A TOLL-like receptor 2, v 99.8 5E-19 1.7E-23 192.2 17.1 118 733-859 192-313 (353)
57 2p1m_B Transport inhibitor res 99.8 3.3E-21 1.1E-25 226.2 -1.1 87 735-825 428-516 (594)
58 2z80_A TOLL-like receptor 2, v 99.8 1E-18 3.5E-23 189.8 17.7 251 591-906 52-313 (353)
59 3g06_A SSPH2 (leucine-rich rep 99.8 3.3E-18 1.1E-22 196.6 20.8 78 178-265 41-118 (622)
60 1ozn_A Reticulon 4 receptor; N 99.8 9E-19 3.1E-23 183.9 14.4 173 735-923 76-251 (285)
61 3zyj_A Leucine-rich repeat-con 99.8 1.2E-17 4E-22 187.2 23.9 227 506-801 64-293 (440)
62 2z66_A Variable lymphocyte rec 99.8 1.7E-18 6E-23 183.9 15.5 137 734-882 121-259 (306)
63 3g06_A SSPH2 (leucine-rich rep 99.8 2.6E-17 8.8E-22 189.2 26.1 235 591-882 61-295 (622)
64 2p1m_B Transport inhibitor res 99.8 8.5E-20 2.9E-24 214.2 5.6 229 432-674 64-324 (594)
65 3o53_A Protein LRIM1, AGAP0063 99.8 1.8E-19 6.1E-24 192.1 6.8 239 589-882 32-273 (317)
66 3zyi_A Leucine-rich repeat-con 99.8 1.9E-17 6.5E-22 186.2 23.2 228 506-801 75-304 (452)
67 1ozn_A Reticulon 4 receptor; N 99.8 5.4E-18 1.9E-22 177.9 17.1 207 505-801 31-239 (285)
68 1wwl_A Monocyte differentiatio 99.8 5.3E-19 1.8E-23 188.0 7.3 247 591-906 43-308 (312)
69 3o53_A Protein LRIM1, AGAP0063 99.7 5.9E-19 2E-23 188.1 6.4 240 504-825 32-272 (317)
70 2xwt_C Thyrotropin receptor; s 99.7 3.5E-17 1.2E-21 166.6 17.6 210 627-906 22-238 (239)
71 3oja_A Leucine-rich immune mol 99.7 2.1E-17 7.1E-22 186.5 15.8 238 588-879 31-270 (487)
72 3oja_A Leucine-rich immune mol 99.7 2.4E-17 8.3E-22 186.0 10.9 146 506-675 34-180 (487)
73 1wwl_A Monocyte differentiatio 99.7 3.7E-18 1.3E-22 181.4 3.9 200 613-882 93-307 (312)
74 2xwt_C Thyrotropin receptor; s 99.7 2.5E-16 8.5E-21 160.3 17.1 199 616-883 32-238 (239)
75 2z62_A TOLL-like receptor 4, v 99.7 3E-16 1E-20 163.7 17.0 136 733-882 94-235 (276)
76 2o6q_A Variable lymphocyte rec 99.7 8.5E-16 2.9E-20 159.4 19.9 134 735-881 81-215 (270)
77 4ay9_X Follicle-stimulating ho 99.7 1.3E-15 4.4E-20 164.6 20.1 154 734-902 99-254 (350)
78 1p9a_G Platelet glycoprotein I 99.7 1.3E-15 4.4E-20 159.3 18.7 201 611-858 6-206 (290)
79 2o6q_A Variable lymphocyte rec 99.7 2.1E-15 7.3E-20 156.4 19.8 113 734-858 104-216 (270)
80 2z62_A TOLL-like receptor 4, v 99.6 1.9E-15 6.3E-20 157.7 17.5 160 734-906 71-236 (276)
81 1p9a_G Platelet glycoprotein I 99.6 2.6E-15 9.1E-20 156.9 16.9 175 591-825 31-205 (290)
82 3rfs_A Internalin B, repeat mo 99.6 1.5E-15 5.1E-20 157.7 14.6 115 735-868 129-243 (272)
83 4ay9_X Follicle-stimulating ho 99.6 5.3E-15 1.8E-19 159.7 18.8 179 591-798 30-213 (350)
84 1h6u_A Internalin H; cell adhe 99.6 7.3E-16 2.5E-20 163.0 10.6 58 358-419 171-228 (308)
85 4glp_A Monocyte differentiatio 99.6 3.3E-15 1.1E-19 158.5 13.3 159 736-906 142-306 (310)
86 3rfs_A Internalin B, repeat mo 99.6 1.6E-15 5.6E-20 157.4 10.4 204 611-889 37-240 (272)
87 4glp_A Monocyte differentiatio 99.6 9.5E-15 3.2E-19 155.0 15.3 198 591-825 91-304 (310)
88 2ast_B S-phase kinase-associat 99.6 2.1E-16 7.1E-21 170.5 2.5 88 735-825 164-257 (336)
89 1h6u_A Internalin H; cell adhe 99.6 3.2E-14 1.1E-18 150.4 16.5 78 591-675 41-118 (308)
90 3m19_A Variable lymphocyte rec 99.5 7.3E-14 2.5E-18 143.1 16.4 164 727-906 25-191 (251)
91 2a5y_B CED-4; apoptosis; HET: 99.5 2E-15 6.8E-20 172.7 4.7 100 2-106 360-473 (549)
92 3m19_A Variable lymphocyte rec 99.5 8.9E-14 3E-18 142.4 16.3 111 735-857 79-189 (251)
93 2ast_B S-phase kinase-associat 99.5 4.8E-16 1.6E-20 167.7 -1.5 208 175-444 66-282 (336)
94 2ca6_A RAN GTPase-activating p 99.5 2.2E-15 7.5E-20 165.6 3.4 36 591-626 94-133 (386)
95 2ca6_A RAN GTPase-activating p 99.5 1.8E-15 6.1E-20 166.4 1.4 92 734-825 182-284 (386)
96 3goz_A Leucine-rich repeat-con 99.5 4.8E-15 1.6E-19 161.1 1.9 58 511-568 3-61 (362)
97 3goz_A Leucine-rich repeat-con 99.5 9.3E-15 3.2E-19 158.8 3.6 39 505-543 21-64 (362)
98 1h6t_A Internalin B; cell adhe 99.5 8.4E-14 2.9E-18 145.7 9.8 168 175-419 44-211 (291)
99 2o6s_A Variable lymphocyte rec 99.4 1.8E-12 6.1E-17 128.5 13.7 118 735-871 72-189 (208)
100 3cvr_A Invasion plasmid antige 99.4 1.3E-12 4.3E-17 148.2 13.9 73 591-675 59-131 (571)
101 3e6j_A Variable lymphocyte rec 99.4 2.8E-12 9.6E-17 128.8 14.5 148 742-906 22-171 (229)
102 4ezg_A Putative uncharacterize 99.4 1.3E-12 4.6E-17 127.9 11.7 151 612-825 41-191 (197)
103 4ezg_A Putative uncharacterize 99.4 1.5E-12 5.2E-17 127.5 11.7 87 734-825 83-169 (197)
104 1xeu_A Internalin C; cellular 99.4 1.7E-13 5.8E-18 140.9 5.1 166 176-419 18-183 (263)
105 1h6t_A Internalin B; cell adhe 99.4 2.5E-12 8.5E-17 134.5 14.0 81 735-825 130-210 (291)
106 3cvr_A Invasion plasmid antige 99.4 5.2E-13 1.8E-17 151.4 9.2 59 360-423 180-245 (571)
107 2v9t_B SLIT homolog 2 protein 99.4 1.2E-12 3.9E-17 130.7 10.6 139 728-906 23-164 (220)
108 1m9s_A Internalin B; cell inva 99.4 4.5E-13 1.5E-17 153.9 8.6 168 175-419 41-208 (605)
109 2v9t_B SLIT homolog 2 protein 99.4 4.1E-12 1.4E-16 126.6 13.6 133 713-858 30-163 (220)
110 2xot_A Amphoterin-induced prot 99.4 1.8E-12 6.2E-17 140.4 11.8 164 727-906 29-201 (361)
111 2o6s_A Variable lymphocyte rec 99.3 4.4E-12 1.5E-16 125.6 12.2 149 738-905 27-176 (208)
112 3e6j_A Variable lymphocyte rec 99.3 7.9E-12 2.7E-16 125.5 13.5 141 727-883 30-171 (229)
113 2xot_A Amphoterin-induced prot 99.3 5.6E-12 1.9E-16 136.6 12.8 88 734-825 107-199 (361)
114 1m9s_A Internalin B; cell inva 99.3 8.8E-12 3E-16 143.2 14.7 81 735-825 127-207 (605)
115 2v70_A SLIT-2, SLIT homolog 2 99.3 3.8E-12 1.3E-16 126.9 10.0 92 728-825 23-115 (220)
116 2v70_A SLIT-2, SLIT homolog 2 99.3 1.7E-11 6E-16 122.1 13.2 105 716-825 33-139 (220)
117 2je0_A Acidic leucine-rich nuc 99.2 1E-11 3.6E-16 115.4 8.4 122 147-277 17-146 (149)
118 1dce_A Protein (RAB geranylger 99.2 2.2E-13 7.6E-18 155.5 -4.5 78 359-440 485-566 (567)
119 2ell_A Acidic leucine-rich nuc 99.2 1.8E-11 6E-16 116.5 8.9 126 147-281 24-157 (168)
120 1xeu_A Internalin C; cellular 99.2 2.3E-11 7.8E-16 124.9 10.4 96 174-276 60-155 (263)
121 2ell_A Acidic leucine-rich nuc 99.2 9.4E-12 3.2E-16 118.4 6.7 101 175-277 22-126 (168)
122 1a9n_A U2A', U2A'; complex (nu 99.2 1.5E-11 5E-16 118.0 7.8 129 141-280 13-149 (176)
123 3sb4_A Hypothetical leucine ri 99.2 6.8E-11 2.3E-15 126.3 13.5 39 501-539 119-157 (329)
124 2je0_A Acidic leucine-rich nuc 99.2 1.3E-11 4.3E-16 114.8 6.1 102 175-278 15-120 (149)
125 2wfh_A SLIT homolog 2 protein 99.2 2.6E-11 8.9E-16 117.8 7.6 102 177-279 31-134 (193)
126 3sb4_A Hypothetical leucine ri 99.2 4.2E-11 1.4E-15 127.9 8.7 280 556-877 23-327 (329)
127 2wfh_A SLIT homolog 2 protein 99.1 6.3E-11 2.2E-15 115.1 8.7 95 180-277 13-108 (193)
128 1w8a_A SLIT protein; signaling 99.1 5.3E-11 1.8E-15 115.7 7.1 99 178-276 30-131 (192)
129 4b8c_D Glucose-repressible alc 99.1 1.3E-11 4.4E-16 145.8 3.1 88 187-276 211-298 (727)
130 4b8c_D Glucose-repressible alc 99.1 3.3E-11 1.1E-15 142.3 6.5 108 169-278 215-323 (727)
131 1w8a_A SLIT protein; signaling 99.1 7.9E-11 2.7E-15 114.5 8.1 104 148-258 30-137 (192)
132 1a9n_A U2A', U2A'; complex (nu 99.0 1E-10 3.6E-15 112.0 4.8 102 173-278 15-120 (176)
133 1vt4_I APAF-1 related killer D 99.0 5.7E-11 2E-15 137.7 3.5 84 3-98 353-437 (1221)
134 1dce_A Protein (RAB geranylger 99.0 2.2E-10 7.5E-15 130.8 7.9 96 178-277 442-539 (567)
135 4fdw_A Leucine rich hypothetic 99.0 2.1E-08 7.1E-13 109.2 21.4 82 811-905 296-381 (401)
136 4fdw_A Leucine rich hypothetic 99.0 2.8E-08 9.7E-13 108.1 22.3 122 739-878 248-377 (401)
137 2r9u_A Variable lymphocyte rec 99.0 3.6E-10 1.2E-14 107.6 6.0 92 177-270 33-127 (174)
138 2o6r_A Variable lymphocyte rec 99.0 2.3E-09 8E-14 102.7 11.5 108 739-858 28-135 (177)
139 2r9u_A Variable lymphocyte rec 99.0 6.7E-10 2.3E-14 105.7 7.3 99 180-282 15-116 (174)
140 1ds9_A Outer arm dynein; leuci 99.0 8.3E-12 2.8E-16 122.4 -6.3 102 172-277 43-146 (198)
141 3g39_A Variable lymphocyte rec 99.0 6.7E-10 2.3E-14 105.3 7.0 81 177-258 30-113 (170)
142 2o6r_A Variable lymphocyte rec 98.9 5.5E-09 1.9E-13 100.1 12.0 127 741-883 9-136 (177)
143 3g39_A Variable lymphocyte rec 98.9 1.7E-09 5.9E-14 102.5 7.1 100 179-282 11-113 (170)
144 1ds9_A Outer arm dynein; leuci 98.9 5.7E-11 2E-15 116.3 -4.3 126 142-277 43-180 (198)
145 3sfz_A APAF-1, apoptotic pepti 98.9 1.2E-09 4.1E-14 139.8 6.5 89 4-104 363-452 (1249)
146 4fs7_A Uncharacterized protein 98.8 3.9E-07 1.4E-11 99.7 22.4 38 501-539 66-103 (394)
147 4fs7_A Uncharacterized protein 98.7 2.3E-07 7.7E-12 101.6 17.1 125 735-879 249-374 (394)
148 2ifg_A High affinity nerve gro 98.7 1.8E-08 6.2E-13 108.5 6.7 82 183-266 14-98 (347)
149 1z6t_A APAF-1, apoptotic prote 98.5 4.3E-08 1.5E-12 114.0 5.6 86 4-101 363-449 (591)
150 4gt6_A Cell surface protein; l 98.5 6.1E-06 2.1E-10 90.2 21.8 108 733-856 259-366 (394)
151 2ifg_A High affinity nerve gro 98.4 4.3E-07 1.5E-11 97.6 8.3 93 727-825 20-113 (347)
152 3un9_A NLR family member X1; l 98.3 3.6E-08 1.2E-12 106.1 -2.7 140 738-882 100-250 (372)
153 2ra8_A Uncharacterized protein 98.3 3.3E-07 1.1E-11 97.6 4.7 84 737-825 250-340 (362)
154 4h09_A Hypothetical leucine ri 98.3 7.8E-05 2.7E-09 80.9 23.1 104 735-854 236-340 (379)
155 4gt6_A Cell surface protein; l 98.2 0.00021 7.1E-09 77.9 25.4 106 758-880 260-366 (394)
156 2ra8_A Uncharacterized protein 98.2 1.5E-06 5E-11 92.6 6.5 64 762-825 251-317 (362)
157 3un9_A NLR family member X1; l 98.2 3.2E-07 1.1E-11 98.8 0.8 115 555-675 123-250 (372)
158 3e4g_A ATP synthase subunit S, 98.0 7.9E-06 2.7E-10 75.7 7.3 39 764-802 62-100 (176)
159 4h09_A Hypothetical leucine ri 98.0 0.00084 2.9E-08 72.7 24.7 130 733-879 211-341 (379)
160 3e4g_A ATP synthase subunit S, 98.0 3.5E-06 1.2E-10 78.0 3.5 87 592-679 62-154 (176)
161 3rw6_A Nuclear RNA export fact 97.8 1.6E-05 5.4E-10 79.9 5.5 81 197-279 167-259 (267)
162 3rw6_A Nuclear RNA export fact 97.6 1E-05 3.5E-10 81.2 1.1 79 175-254 168-258 (267)
163 1io0_A Tropomodulin; LRR prote 97.5 1.7E-05 5.8E-10 75.8 0.5 91 735-825 32-133 (185)
164 1io0_A Tropomodulin; LRR prote 97.4 5.7E-05 2E-09 72.1 3.5 84 175-258 34-134 (185)
165 3rfe_A Platelet glycoprotein I 96.3 0.0047 1.6E-07 54.4 5.6 52 180-233 11-65 (130)
166 1pgv_A TMD-1, tropomodulin TMD 94.9 0.008 2.7E-07 56.7 1.6 91 735-825 37-136 (197)
167 3rfe_A Platelet glycoprotein I 93.0 0.11 3.7E-06 45.5 5.1 56 743-801 12-69 (130)
168 1pgv_A TMD-1, tropomodulin TMD 92.4 0.15 5E-06 48.1 5.4 84 175-258 39-137 (197)
169 3lqv_P Splicing factor 3B subu 21.9 28 0.00095 22.2 0.7 9 28-36 30-38 (39)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=1.3e-51 Score=495.93 Aligned_cols=636 Identities=15% Similarity=0.051 Sum_probs=343.3
Q ss_pred ccccccCCCcccEEEecCccccccCccccCCCcccEEecCCCCCc-ccch--hHhhcccCcEEecCCCcchhhchHhh-c
Q 048004 169 ILPKLLKPQRLRAFSLRGYYIFELPDSVGDLRYLRYLNLCGTKIR-TLPE--SVNKLYNLHSLLLEDCDRLKKLCADM-G 244 (943)
Q Consensus 169 ~~~~~~~l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~L~~n~i~-~lp~--~i~~L~~L~~L~L~~~~~l~~lp~~~-~ 244 (943)
+++.+.+++.|+.++++.+.+..+|+.|+++++|++|+|++|.++ .+|. .++++++|++|++++|......|..+ +
T Consensus 69 l~~~l~~L~~L~~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~ 148 (768)
T 3rgz_A 69 VSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGL 148 (768)
T ss_dssp HHHHTTTCTTCCEEECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCC
T ss_pred cChhHhccCcccccCCcCCCcCCCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhc
Confidence 444455666777777776666666666777777777777777665 4555 66677777777777655444555444 5
Q ss_pred ccccccccccCCCCccccCCcc---cCCccccccccceeeccCCCCCchhhhcccccCCeeeeccccccCCcccchhhhc
Q 048004 245 NLAKLHHLKNSNTKSLEEMPVG---IGKLTSLQTLCNFVVGKGSGSGLRELKLLTHLHGTLNISKLENVKCVGDAMEAQM 321 (943)
Q Consensus 245 ~L~~L~~L~l~~~~~~~~~p~~---i~~L~~L~~L~~~~~~~~~~~~l~~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l 321 (943)
++++|++|++++|......|.. ++++++|++|
T Consensus 149 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L--------------------------------------------- 183 (768)
T 3rgz_A 149 KLNSLEVLDLSANSISGANVVGWVLSDGCGELKHL--------------------------------------------- 183 (768)
T ss_dssp CCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEE---------------------------------------------
T ss_pred cCCCCCEEECCCCccCCcCChhhhhhccCCCCCEE---------------------------------------------
Confidence 6667777777666632333333 4455555555
Q ss_pred CCCCCCCeEEEEeecCCCCCCCcchhcHHhhhccCCCCCCcceEEEeccCCCCCCcCcCCCCCCCccEEEEecCCCCCCC
Q 048004 322 DGKKNLKELSLKWTCSTDGSSSREAETEMGVLDMLKPHTNLEQFCIKGYGGMKFPTWLGDSLFSNLVTLEFEDCGMCTAL 401 (943)
Q Consensus 322 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l 401 (943)
++++|..... .....+++|+.|++.++.....+..+.. +++|++|++++|.+.+.+
T Consensus 184 ---------~Ls~n~l~~~-------------~~~~~l~~L~~L~Ls~n~l~~~~~~l~~--l~~L~~L~Ls~n~l~~~~ 239 (768)
T 3rgz_A 184 ---------AISGNKISGD-------------VDVSRCVNLEFLDVSSNNFSTGIPFLGD--CSALQHLDISGNKLSGDF 239 (768)
T ss_dssp ---------ECCSSEEESC-------------CBCTTCTTCCEEECCSSCCCSCCCBCTT--CCSCCEEECCSSCCCSCH
T ss_pred ---------ECCCCccccc-------------CCcccCCcCCEEECcCCcCCCCCccccc--CCCCCEEECcCCcCCCcc
Confidence 3332211000 0001223333333333333332222332 566666666666665555
Q ss_pred C-CCCCCCCCCeeEEccccCeeEeCccccCCCCCccceeecccccccccccccCCcccccCCCcccEEecccCcccccCC
Q 048004 402 P-SVGQLPSLKHLTVRGMSRVKRLGSEFCGNDPPCLETLRFENMREWEDWIPHGSGQRVEGFPKLRELHILRCSKLKGTF 480 (943)
Q Consensus 402 ~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~ 480 (943)
| .++.+++|++|++++|.....++.. .+++|++|++.++.-. ...+... ...+++|++|++++| .+++.+
T Consensus 240 ~~~l~~l~~L~~L~Ls~n~l~~~~~~~----~l~~L~~L~L~~n~l~-~~ip~~~---~~~~~~L~~L~Ls~n-~l~~~~ 310 (768)
T 3rgz_A 240 SRAISTCTELKLLNISSNQFVGPIPPL----PLKSLQYLSLAENKFT-GEIPDFL---SGACDTLTGLDLSGN-HFYGAV 310 (768)
T ss_dssp HHHTTTCSSCCEEECCSSCCEESCCCC----CCTTCCEEECCSSEEE-ESCCCCS---CTTCTTCSEEECCSS-EEEECC
T ss_pred cHHHhcCCCCCEEECCCCcccCccCcc----ccCCCCEEECcCCccC-CccCHHH---HhhcCcCCEEECcCC-cCCCcc
Confidence 5 5666666666666666433322211 2444444444443211 0011000 112355555555553 333344
Q ss_pred CCCCCccceEEeccccCccccCCCCCcccEEEEcCCcCeeeecc-ccCCCCCccEEEEecccccchhhhhhhhhhhccC-
Q 048004 481 PEHLPALEMLVIEGCEELLVSVSSLPALCKLHIGGCKKVVWRRP-LKLRLPKLEELEIENMKEQTYIWKSHKELLQDIC- 558 (943)
Q Consensus 481 p~~l~~L~~L~l~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~i~~~~~~~~~~l~- 558 (943)
| ..+..+++|++|++++|.+.+..+. .+..+++|++|++++|.....+ +..+..++
T Consensus 311 p------------------~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~----p~~l~~l~~ 368 (768)
T 3rgz_A 311 P------------------PFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGEL----PESLTNLSA 368 (768)
T ss_dssp C------------------GGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECC----CTTHHHHTT
T ss_pred c------------------hHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccc----cHHHHhhhc
Confidence 4 2334445555555555554432222 2444555555555554433221 11122333
Q ss_pred CccEEeecCCCCcccchhhhhhHHhhhhhcccccccEEEeecCCCCCCCCccccCccccceEEeccCCCccccCC-ccCC
Q 048004 559 SLKRLTIDSCPKLQSLVAEEEKDQQQQLCELSCRLEYLTLSGCQGLVKLPQSSLSLNSLREIEIYKCSSLVSFPE-VALP 637 (943)
Q Consensus 559 ~L~~L~l~~~~~L~~l~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~ 637 (943)
+|+.|++++|.--..++..... ...++|++|++++|...+.+|..+..+++|++|++++|...+.+|. +..+
T Consensus 369 ~L~~L~Ls~N~l~~~~~~~~~~-------~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l 441 (768)
T 3rgz_A 369 SLLTLDLSSNNFSGPILPNLCQ-------NPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSL 441 (768)
T ss_dssp TCSEEECCSSEEEEECCTTTTC-------STTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGC
T ss_pred CCcEEEccCCCcCCCcChhhhh-------cccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcC
Confidence 4555555544221111110000 0013455555555555445555555555555555555543333332 3445
Q ss_pred CCccEEEeccCCCCcccccccccCCCCCCCeEEEeecCCCccccCc-cCCCCccEEEeccCCCccccccccccccCCCCC
Q 048004 638 SKLKKIEIRECDALKSLPEAWMCGTNSSLEILSIQGCHSLTYIAGV-QLPPSLKRLEIDFCDNLRTLTVEEGIQSSSSSS 716 (943)
Q Consensus 638 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~~~ 716 (943)
++|++|++++|...+.+|..+ ..+++|++|++++|...+.+|.. .-.++|+.|++++|.-...++ ...+.+++
T Consensus 442 ~~L~~L~L~~n~l~~~~p~~~--~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p----~~~~~l~~ 515 (768)
T 3rgz_A 442 SKLRDLKLWLNMLEGEIPQEL--MYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIP----KWIGRLEN 515 (768)
T ss_dssp TTCCEEECCSSCCCSCCCGGG--GGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCC----GGGGGCTT
T ss_pred CCCCEEECCCCcccCcCCHHH--cCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCC----hHHhcCCC
Confidence 555555555555444444444 44555555555555543333321 112233333333332111111 00123445
Q ss_pred CCeeeeeccCCcccccccCCCCCCcCeEeecCCCCceecCCCCCCCCCcce-----------------------------
Q 048004 717 SSSRSIWTCENLKFLPSGLHNLRQLQEIEIWECENLVSFPQGGLPCAKLSM----------------------------- 767 (943)
Q Consensus 717 L~~l~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~----------------------------- 767 (943)
|+.|++++|.-...+|..+.++++|+.|++++|+..+.+|..++....+..
T Consensus 516 L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 595 (768)
T 3rgz_A 516 LAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLE 595 (768)
T ss_dssp CCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEE
T ss_pred CCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccc
Confidence 666666666555567777777788888888887777777765544333322
Q ss_pred -----------------EeecccCCCCccccccCCCCccceEEecCCCchhhhhhhhccccCCCCCcCEEEEeecCCCce
Q 048004 768 -----------------LTVYGCERLKALPKGLHNLTNLHSLEIHGNTKIWKSMIEWGRGFHRFSSLRELKISRCDDDMV 830 (943)
Q Consensus 768 -----------------L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~ls~n~~~~~ 830 (943)
++++.+...+.+|..+..+++|+.||+++|... +.+|..++.+++|++|++++| ...+
T Consensus 596 ~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~----g~ip~~l~~l~~L~~L~Ls~N-~l~g 670 (768)
T 3rgz_A 596 FQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLS----GYIPKEIGSMPYLFILNLGHN-DISG 670 (768)
T ss_dssp CTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCB----SCCCGGGGGCTTCCEEECCSS-CCCS
T ss_pred cccccchhhhccccccccccccceecccCchhhhccccccEEECcCCccc----ccCCHHHhccccCCEEeCcCC-ccCC
Confidence 222234444556667788899999999999744 334556899999999999996 4455
Q ss_pred ecCCCccccCCCCCCCCccceeeccCCCCCcccccccccCCCCCeEEEcCCCCCCCCCCCCCCcccceeeecCCcchh--
Q 048004 831 SFPPEDIRLGTTLPLPASLTSLEIGYFPNLERLSSSIVDLQNLTSLFLYHCPKLKYFPEKGLPSSLLELIIYRCPLIA-- 908 (943)
Q Consensus 831 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~i~~c~~l~-- 908 (943)
.+|... ..+++|+.|++++|...+.+|..+..+++|+.|++++|+--..+|..+.+.++....+.|||.+.
T Consensus 671 ~ip~~l-------~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~ 743 (768)
T 3rgz_A 671 SIPDEV-------GDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGY 743 (768)
T ss_dssp CCCGGG-------GGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSSSSGGGSCGGGGCSCTEEEST
T ss_pred CCChHH-------hCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCchhhccCCHHHhcCCchhcCC
Confidence 788766 68899999999998877799999999999999999998877899998888888888899988542
Q ss_pred --hhhcCCCCCCCccccCcceEE
Q 048004 909 --EKCGKDGGQYWDLLTHIPHVA 929 (943)
Q Consensus 909 --~~~~~~~~~~~~~~~~~~~~~ 929 (943)
..|...++++|++++|++.+.
T Consensus 744 ~l~~C~~~~~~~~~~~~~~~~~~ 766 (768)
T 3rgz_A 744 PLPRCDPSNADGYAHHQRSHHHH 766 (768)
T ss_dssp TSCCCCSCC--------------
T ss_pred CCcCCCCCccCCCCCCCCccccC
Confidence 268999999999999998754
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=1.1e-47 Score=461.72 Aligned_cols=648 Identities=14% Similarity=0.067 Sum_probs=437.4
Q ss_pred ccccCCCCcceeeeecccCCCCCCCCCCccccccCCCcccEEEecCcccc-ccCc--cccCCCcccEEecCCCCCc-ccc
Q 048004 141 GDLYDIQHLRTFLPVMLTNSRPGFLAPSILPKLLKPQRLRAFSLRGYYIF-ELPD--SVGDLRYLRYLNLCGTKIR-TLP 216 (943)
Q Consensus 141 ~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~-~lp~--~~~~L~~L~~L~L~~n~i~-~lp 216 (943)
+.+..+++|+.+...... ...++..+..+++|++|+|++|.+. .+|. .++++++|++|+|++|.++ .+|
T Consensus 71 ~~l~~L~~L~~l~~~~~~-------~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~ 143 (768)
T 3rgz_A 71 SSLLSLTGLESLFLSNSH-------INGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGK 143 (768)
T ss_dssp HHTTTCTTCCEEECTTSC-------EEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSS
T ss_pred hhHhccCcccccCCcCCC-------cCCCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCC
Confidence 345556666666432221 1123345559999999999999985 5777 8999999999999999987 566
Q ss_pred hhH-hhcccCcEEecCCCcchhhchHh---hcccccccccccCCCCccccCCcccCCccccccccceeeccCCCCCchhh
Q 048004 217 ESV-NKLYNLHSLLLEDCDRLKKLCAD---MGNLAKLHHLKNSNTKSLEEMPVGIGKLTSLQTLCNFVVGKGSGSGLREL 292 (943)
Q Consensus 217 ~~i-~~L~~L~~L~L~~~~~l~~lp~~---~~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~l~~l 292 (943)
..+ .++++|++|++++|......|.. ++++++|++|++++|......| ++.+++|++|+....
T Consensus 144 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n----------- 210 (768)
T 3rgz_A 144 VSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSN----------- 210 (768)
T ss_dssp CCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCB--CTTCTTCCEEECCSS-----------
T ss_pred HHHhccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCC--cccCCcCCEEECcCC-----------
Confidence 655 89999999999998766666766 7899999999999998433333 478888888832211
Q ss_pred hcccccCCeeeeccccccCCcccchhhhcCCCCCCCeEEEEeecCCCCCCCcchhcHHhhhccCCCCCCcceEEEeccCC
Q 048004 293 KLLTHLHGTLNISKLENVKCVGDAMEAQMDGKKNLKELSLKWTCSTDGSSSREAETEMGVLDMLKPHTNLEQFCIKGYGG 372 (943)
Q Consensus 293 ~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~ 372 (943)
.+. ...+. +..+++|+.|++++|.... .....+...++|+.|++.++..
T Consensus 211 -------------~l~------~~~~~-l~~l~~L~~L~Ls~n~l~~-----------~~~~~l~~l~~L~~L~Ls~n~l 259 (768)
T 3rgz_A 211 -------------NFS------TGIPF-LGDCSALQHLDISGNKLSG-----------DFSRAISTCTELKLLNISSNQF 259 (768)
T ss_dssp -------------CCC------SCCCB-CTTCCSCCEEECCSSCCCS-----------CHHHHTTTCSSCCEEECCSSCC
T ss_pred -------------cCC------CCCcc-cccCCCCCEEECcCCcCCC-----------cccHHHhcCCCCCEEECCCCcc
Confidence 111 11223 7788999999998753321 1234566788999999999876
Q ss_pred CC-CCcCcCCCCCCCccEEEEecCCCCCCCC-CCCC-CCCCCeeEEccccCeeEeCccccCCCCCccceeeccccccccc
Q 048004 373 MK-FPTWLGDSLFSNLVTLEFEDCGMCTALP-SVGQ-LPSLKHLTVRGMSRVKRLGSEFCGNDPPCLETLRFENMREWED 449 (943)
Q Consensus 373 ~~-~p~~~~~~~l~~L~~L~L~~~~~~~~l~-~l~~-l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~ 449 (943)
.. +|.+ .+++|++|++++|.+.+.+| .+.. +++|++|++++|.....++..+. .+++|++|++.++.-...
T Consensus 260 ~~~~~~~----~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~--~l~~L~~L~L~~n~l~~~ 333 (768)
T 3rgz_A 260 VGPIPPL----PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFG--SCSLLESLALSSNNFSGE 333 (768)
T ss_dssp EESCCCC----CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGG--GCTTCCEEECCSSEEEEE
T ss_pred cCccCcc----ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHh--cCCCccEEECCCCcccCc
Confidence 53 3443 37899999999999887776 5555 49999999999966555555554 389999999998653212
Q ss_pred ccccCCcccccCCCcccEEecccCcccccCCCCCC---C-ccceEEeccccCcc---ccCCC--CCcccEEEEcCCcCee
Q 048004 450 WIPHGSGQRVEGFPKLRELHILRCSKLKGTFPEHL---P-ALEMLVIEGCEELL---VSVSS--LPALCKLHIGGCKKVV 520 (943)
Q Consensus 450 ~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~~l---~-~L~~L~l~~~~~l~---~~~~~--l~~L~~L~l~~~~~~~ 520 (943)
.... .+..+++|++|++++| .+++.+|..+ + +|+.|++++|.... ..+.. +++|++|++++|.+..
T Consensus 334 ip~~----~l~~l~~L~~L~Ls~n-~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~ 408 (768)
T 3rgz_A 334 LPMD----TLLKMRGLKVLDLSFN-EFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTG 408 (768)
T ss_dssp CCHH----HHTTCTTCCEEECCSS-EEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEE
T ss_pred CCHH----HHhcCCCCCEEeCcCC-ccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCcccc
Confidence 1111 1456899999999995 6777888643 3 89999999987432 22333 7889999999999998
Q ss_pred eeccccCCCCCccEEEEecccccchhhhhhhhhhhccCCccEEeecCCCCcccchhhhhhHHhhhhhcccccccEEEeec
Q 048004 521 WRRPLKLRLPKLEELEIENMKEQTYIWKSHKELLQDICSLKRLTIDSCPKLQSLVAEEEKDQQQQLCELSCRLEYLTLSG 600 (943)
Q Consensus 521 ~~~~~~~~l~~L~~L~l~~~~~~~~i~~~~~~~~~~l~~L~~L~l~~~~~L~~l~~~~~~~~~~~l~~~~~~L~~L~l~~ 600 (943)
..+..+..+++|+.|++++|..... .+..+..+++|+.|++++|..-..++.. .. ..++|++|++++
T Consensus 409 ~~p~~l~~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~L~~n~l~~~~p~~-~~--------~l~~L~~L~L~~ 475 (768)
T 3rgz_A 409 KIPPTLSNCSELVSLHLSFNYLSGT----IPSSLGSLSKLRDLKLWLNMLEGEIPQE-LM--------YVKTLETLILDF 475 (768)
T ss_dssp ECCGGGGGCTTCCEEECCSSEEESC----CCGGGGGCTTCCEEECCSSCCCSCCCGG-GG--------GCTTCCEEECCS
T ss_pred ccCHHHhcCCCCCEEECcCCcccCc----ccHHHhcCCCCCEEECCCCcccCcCCHH-Hc--------CCCCceEEEecC
Confidence 8888999999999999999976543 2445688899999999998543333221 11 227899999999
Q ss_pred CCCCCCCCccccCccccceEEeccCCCccccCC-ccCCCCccEEEeccCCCCcccccccccCCCCCCCeEEEeecCCCcc
Q 048004 601 CQGLVKLPQSSLSLNSLREIEIYKCSSLVSFPE-VALPSKLKKIEIRECDALKSLPEAWMCGTNSSLEILSIQGCHSLTY 679 (943)
Q Consensus 601 ~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~ 679 (943)
|...+.+|..+..+++|++|++++|...+.+|. ++.+++|++|++++|...+.+|..+ ..+++|+.|++++|+..+.
T Consensus 476 N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l--~~l~~L~~L~Ls~N~l~g~ 553 (768)
T 3rgz_A 476 NDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAEL--GDCRSLIWLDLNTNLFNGT 553 (768)
T ss_dssp SCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGG--GGCTTCCEEECCSSEEESB
T ss_pred CcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHH--cCCCCCCEEECCCCccCCc
Confidence 998888999999999999999999987777774 5678999999999988887888877 7889999999999987666
Q ss_pred ccCccCC-CCccEEEeccCCCccccccccccccCCCCCCCeeeeeccCCcccccccCCCCCCcCeEeecCCCCceecCCC
Q 048004 680 IAGVQLP-PSLKRLEIDFCDNLRTLTVEEGIQSSSSSSSSSRSIWTCENLKFLPSGLHNLRQLQEIEIWECENLVSFPQG 758 (943)
Q Consensus 680 ~~~~~~~-~~L~~L~l~~c~~L~~l~~~~~~~~~~~~~L~~l~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~ 758 (943)
+|..... ..+..+.+.....+..+ .......... .....+ ......+..+..++.++.+++..+...+.+|..
T Consensus 554 ip~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~-~~~~~~---~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~ 627 (768)
T 3rgz_A 554 IPAAMFKQSGKIAANFIAGKRYVYI--KNDGMKKECH-GAGNLL---EFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPT 627 (768)
T ss_dssp CCGGGGTTTTCBCCSTTCSCEEEEE--ECCSCCTTCC-SSEEEE---ECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCS
T ss_pred CChHHhcccchhhhhcccccccccc--cccccccccc-cccccc---ccccccchhhhccccccccccccceecccCchh
Confidence 6643111 11111111111111111 1110000000 000000 000112333444555555666666666666666
Q ss_pred CCCCCCcceEeecccCCCCccccccCCCCccceEEecCCCchhhhhhhhccccCCCCCcCEEEEeecCCCceecCCCccc
Q 048004 759 GLPCAKLSMLTVYGCERLKALPKGLHNLTNLHSLEIHGNTKIWKSMIEWGRGFHRFSSLRELKISRCDDDMVSFPPEDIR 838 (943)
Q Consensus 759 ~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~~~~~~~~ 838 (943)
+..+++|+.|++++|.+.+.+|..++++++|+.|++++|... +.+|..+..+++|++|+|++| ...+.+|...
T Consensus 628 ~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~----g~ip~~l~~L~~L~~LdLs~N-~l~g~ip~~l-- 700 (768)
T 3rgz_A 628 FDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDIS----GSIPDEVGDLRGLNILDLSSN-KLDGRIPQAM-- 700 (768)
T ss_dssp CSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCC----SCCCGGGGGCTTCCEEECCSS-CCEECCCGGG--
T ss_pred hhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccC----CCCChHHhCCCCCCEEECCCC-cccCcCChHH--
Confidence 666666777777776666666666666677777777666533 233344666667777777664 3334555444
Q ss_pred cCCCCCCCCccceeeccCCCCCcccccccccCCCCCeEEEcCCCCC
Q 048004 839 LGTTLPLPASLTSLEIGYFPNLERLSSSIVDLQNLTSLFLYHCPKL 884 (943)
Q Consensus 839 ~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l 884 (943)
..+++|++|++++|+..+.+|.. ..+.++....+.+|+.+
T Consensus 701 -----~~l~~L~~L~ls~N~l~g~iP~~-~~~~~~~~~~~~gN~~L 740 (768)
T 3rgz_A 701 -----SALTMLTEIDLSNNNLSGPIPEM-GQFETFPPAKFLNNPGL 740 (768)
T ss_dssp -----GGCCCCSEEECCSSEEEEECCSS-SSGGGSCGGGGCSCTEE
T ss_pred -----hCCCCCCEEECcCCcccccCCCc-hhhccCCHHHhcCCchh
Confidence 45666777777776555556542 23344444445555544
No 3
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=3.9e-44 Score=428.00 Aligned_cols=481 Identities=16% Similarity=0.095 Sum_probs=299.2
Q ss_pred CCCccEEEEecCCCCCCCC-C--CCCCCCCCeeEEccccCeeEeCccccCCCCCccceeecccccccccccccCCccccc
Q 048004 384 FSNLVTLEFEDCGMCTALP-S--VGQLPSLKHLTVRGMSRVKRLGSEFCGNDPPCLETLRFENMREWEDWIPHGSGQRVE 460 (943)
Q Consensus 384 l~~L~~L~L~~~~~~~~l~-~--l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~ 460 (943)
+++|+.|++++|.+.+..+ . ...+++|+.|++++|......+..+. .+++|+.|.+.++........ ... ...
T Consensus 144 l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~--~l~~L~~L~l~~~~l~~~~~~-~~~-~~l 219 (680)
T 1ziw_A 144 LENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFH--AIGRLFGLFLNNVQLGPSLTE-KLC-LEL 219 (680)
T ss_dssp CTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGG--GSSEECEEECTTCCCHHHHHH-HHH-HHH
T ss_pred cccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccChhhhh--hhhhhhhhhccccccChhhHH-HHH-HHh
Confidence 7888999998888766554 2 23557888888888743332222222 255666666655321110000 000 001
Q ss_pred CCCcccEEecccCcccccCCCCCC-----CccceEEeccccCcc---ccCCCCCcccEEEEcCCcCeeeeccccCCCCCc
Q 048004 461 GFPKLRELHILRCSKLKGTFPEHL-----PALEMLVIEGCEELL---VSVSSLPALCKLHIGGCKKVVWRRPLKLRLPKL 532 (943)
Q Consensus 461 ~~~~L~~L~l~~c~~l~~~~p~~l-----~~L~~L~l~~~~~l~---~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L 532 (943)
..++|+.|++++| .+++..|..+ ++|+.|++++|.... ..+..+++|++|++++|.+....+..+..+++|
T Consensus 220 ~~~~L~~L~L~~n-~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 298 (680)
T 1ziw_A 220 ANTSIRNLSLSNS-QLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNV 298 (680)
T ss_dssp TTSCCCEEECTTS-CCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTC
T ss_pred hhccccEEEccCC-cccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCc
Confidence 2356777777774 4443444333 225555555554211 223445555555555555555555455555555
Q ss_pred cEEEEecccccchhhhhhhhhhhccCCccEEeecCCCCcccchhhhhhHHhhhhhcccccccEEEeecCCCCCCCCcccc
Q 048004 533 EELEIENMKEQTYIWKSHKELLQDICSLKRLTIDSCPKLQSLVAEEEKDQQQQLCELSCRLEYLTLSGCQGLVKLPQSSL 612 (943)
Q Consensus 533 ~~L~l~~~~~~~~i~~~~~~~~~~l~~L~~L~l~~~~~L~~l~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~l~~~~~ 612 (943)
+.|+++++.....+. ...++.+....+ ..+++|++|++++|......+..+.
T Consensus 299 ~~L~L~~~~~~~~~~------~~~lp~i~~~~~----------------------~~l~~L~~L~l~~n~l~~~~~~~~~ 350 (680)
T 1ziw_A 299 RYLNLKRSFTKQSIS------LASLPKIDDFSF----------------------QWLKCLEHLNMEDNDIPGIKSNMFT 350 (680)
T ss_dssp CEEECTTCBCCC------------CCEECTTTT----------------------TTCTTCCEEECCSCCBCCCCTTTTT
T ss_pred cEEeccchhhhcccc------cccccccChhhc----------------------ccCCCCCEEECCCCccCCCChhHhc
Confidence 555554432211100 000010000000 1126889999999887777777888
Q ss_pred CccccceEEeccCCC-ccccCCccC----CCCccEEEeccCCCCcccccccccCCCCCCCeEEEeecCCCccccCcc--C
Q 048004 613 SLNSLREIEIYKCSS-LVSFPEVAL----PSKLKKIEIRECDALKSLPEAWMCGTNSSLEILSIQGCHSLTYIAGVQ--L 685 (943)
Q Consensus 613 ~l~~L~~L~l~~~~~-l~~~~~~~~----~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~--~ 685 (943)
.+++|++|++++|.. +..++...+ .++|+.|++++|...+..+..+ ..+++|+.|++++|...+.++... -
T Consensus 351 ~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~--~~l~~L~~L~L~~N~l~~~~~~~~~~~ 428 (680)
T 1ziw_A 351 GLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAF--SWLGHLEVLDLGLNEIGQELTGQEWRG 428 (680)
T ss_dssp TCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTT--TTCTTCCEEECCSSCCEEECCSGGGTT
T ss_pred cccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhh--hCCCCCCEEeCCCCcCccccCcccccC
Confidence 999999999998853 333443221 3689999999976655555554 788999999999998654444221 1
Q ss_pred CCCccEEEeccCCCccccccccccccCCCCCCCeeeeeccCCcccccccCCCCCCcCeEeecCCCCc--eecCCCCCCCC
Q 048004 686 PPSLKRLEIDFCDNLRTLTVEEGIQSSSSSSSSSRSIWTCENLKFLPSGLHNLRQLQEIEIWECENL--VSFPQGGLPCA 763 (943)
Q Consensus 686 ~~~L~~L~l~~c~~L~~l~~~~~~~~~~~~~L~~l~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~~--~~~~~~~~~l~ 763 (943)
.++|+.|++++ +.-....+..+..+++|+.|++++|... +.+|..+..++
T Consensus 429 l~~L~~L~Ls~----------------------------n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~ 480 (680)
T 1ziw_A 429 LENIFEIYLSY----------------------------NKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLR 480 (680)
T ss_dssp CTTCCEEECCS----------------------------CSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCT
T ss_pred cccccEEecCC----------------------------CCcceeChhhhhcCcccccchhccccccccccCCcccccCC
Confidence 12333333333 3222223566788999999999998764 67788899999
Q ss_pred CcceEeecccCCCCccccccCCCCccceEEecCCCchhhhhhhhc----cccCCCCCcCEEEEeecCCCceecCCCcccc
Q 048004 764 KLSMLTVYGCERLKALPKGLHNLTNLHSLEIHGNTKIWKSMIEWG----RGFHRFSSLRELKISRCDDDMVSFPPEDIRL 839 (943)
Q Consensus 764 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~----~~~~~l~~L~~L~ls~n~~~~~~~~~~~~~~ 839 (943)
+|++|++++|.+.+..+..+.++++|++|++++|..........+ ..+..+++|++|++++| .+..+|.+.|
T Consensus 481 ~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N--~l~~i~~~~~-- 556 (680)
T 1ziw_A 481 NLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESN--GFDEIPVEVF-- 556 (680)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSS--CCCCCCTTTT--
T ss_pred CCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCC--CCCCCCHHHc--
Confidence 999999999998777777789999999999999986543222111 12788999999999998 6668887665
Q ss_pred CCCCCCCCccceeeccCCCCCcccccc-cccCCCCCeEEEcCCCCCCCCCCCC---CCcccceeeecCCcchhhhhcCCC
Q 048004 840 GTTLPLPASLTSLEIGYFPNLERLSSS-IVDLQNLTSLFLYHCPKLKYFPEKG---LPSSLLELIIYRCPLIAEKCGKDG 915 (943)
Q Consensus 840 ~~~~~~l~~L~~L~l~~~~~l~~l~~~-~~~l~~L~~L~l~~c~~l~~l~~~~---~~~~L~~L~i~~c~~l~~~~~~~~ 915 (943)
..+++|+.|+++++ .++.+|.. +.++++|+.|++++| +++.+++.. .+++|+.|++++||. .|.|+.
T Consensus 557 ----~~l~~L~~L~Ls~N-~l~~l~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~~~L~~l~l~~N~~---~c~c~~ 627 (680)
T 1ziw_A 557 ----KDLFELKIIDLGLN-NLNTLPASVFNNQVSLKSLNLQKN-LITSVEKKVFGPAFRNLTELDMRFNPF---DCTCES 627 (680)
T ss_dssp ----TTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECTTS-CCCBCCHHHHHHHHTTCSEEECTTCCC---CBCCCC
T ss_pred ----ccccCcceeECCCC-CCCcCCHhHhCCCCCCCEEECCCC-cCCccChhHhcccccccCEEEccCCCc---ccCCcc
Confidence 68999999999995 67788875 578999999999996 788887643 258999999999998 688875
Q ss_pred -CCCCccccCcceEEECC-eeeeccccc
Q 048004 916 -GQYWDLLTHIPHVAIDG-KSIFGDKYS 941 (943)
Q Consensus 916 -~~~~~~~~~~~~~~~~~-~~~~~~~~~ 941 (943)
.|...|+... .+.+.+ ...+.|++|
T Consensus 628 ~~~~~~~~~~~-~~~~~~~~~~~~C~~p 654 (680)
T 1ziw_A 628 IAWFVNWINET-HTNIPELSSHYLCNTP 654 (680)
T ss_dssp CSSEECCSSCC-----------------
T ss_pred HHHHHHHHHhc-CcccccccCCcEECCc
Confidence 6765665442 222322 344556555
No 4
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=5.6e-41 Score=400.71 Aligned_cols=563 Identities=18% Similarity=0.118 Sum_probs=329.5
Q ss_pred CcccEEEecCccccccCc-cccCCCcccEEecCCCCCccc-chhHhhcccCcEEecCCCcchhhchH-hhcccccccccc
Q 048004 177 QRLRAFSLRGYYIFELPD-SVGDLRYLRYLNLCGTKIRTL-PESVNKLYNLHSLLLEDCDRLKKLCA-DMGNLAKLHHLK 253 (943)
Q Consensus 177 ~~L~~L~L~~~~i~~lp~-~~~~L~~L~~L~L~~n~i~~l-p~~i~~L~~L~~L~L~~~~~l~~lp~-~~~~L~~L~~L~ 253 (943)
+++++|++++|.++.+|. .|+++++|++|+|++|.++.+ |..++++++|++|++++| .+..+|. .|+++++|++|+
T Consensus 25 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~ 103 (680)
T 1ziw_A 25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHN-ELSQLSDKTFAFCTNLTELH 103 (680)
T ss_dssp TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSS-CCCCCCTTTTTTCTTCSEEE
T ss_pred CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCC-ccCccChhhhccCCCCCEEE
Confidence 678888998888888764 588888899999988888866 567888889999999885 5566665 488888999999
Q ss_pred cCCCCccccCCc-ccCCccccccccceeeccCCCCCchhhhcccccCCeeeeccccccCCcccchhhhcCCCCCCCeEEE
Q 048004 254 NSNTKSLEEMPV-GIGKLTSLQTLCNFVVGKGSGSGLRELKLLTHLHGTLNISKLENVKCVGDAMEAQMDGKKNLKELSL 332 (943)
Q Consensus 254 l~~~~~~~~~p~-~i~~L~~L~~L~~~~~~~~~~~~l~~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l 332 (943)
+++|. +..+|. .++++++|++|+.... .+. ...+..+..+++|+.|++
T Consensus 104 L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n------------------------~l~------~~~~~~~~~l~~L~~L~L 152 (680)
T 1ziw_A 104 LMSNS-IQKIKNNPFVKQKNLITLDLSHN------------------------GLS------STKLGTQVQLENLQELLL 152 (680)
T ss_dssp CCSSC-CCCCCSCTTTTCTTCCEEECCSS------------------------CCS------CCCCCSSSCCTTCCEEEC
T ss_pred CCCCc-cCccChhHccccCCCCEEECCCC------------------------ccc------ccCchhhcccccCCEEEc
Confidence 98887 666664 4888888888833211 111 112223455667777777
Q ss_pred EeecCCCCCCCcchhcHHhhhccCCCCCCcceEEEeccCCCCCCcC-cCCCCCCCccEEEEecCCCCCCCC-CCCCCCCC
Q 048004 333 KWTCSTDGSSSREAETEMGVLDMLKPHTNLEQFCIKGYGGMKFPTW-LGDSLFSNLVTLEFEDCGMCTALP-SVGQLPSL 410 (943)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~-~~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L 410 (943)
++|.. ..++.. +.....++|+.|++++|.+.+..| .++.+++|
T Consensus 153 ~~n~l-----------------------------------~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L 197 (680)
T 1ziw_A 153 SNNKI-----------------------------------QALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRL 197 (680)
T ss_dssp CSSCC-----------------------------------CCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEE
T ss_pred cCCcc-----------------------------------cccCHHHhhccccccccEEECCCCcccccChhhhhhhhhh
Confidence 65322 111110 000012445555555554444333 34444444
Q ss_pred CeeEEccccCeeEeCccccC-CCCCccceeecccccccccccccCCcccccCC--CcccEEecccCcccccCCC---CCC
Q 048004 411 KHLTVRGMSRVKRLGSEFCG-NDPPCLETLRFENMREWEDWIPHGSGQRVEGF--PKLRELHILRCSKLKGTFP---EHL 484 (943)
Q Consensus 411 ~~L~l~~~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~--~~L~~L~l~~c~~l~~~~p---~~l 484 (943)
+.|++.++.........+.. ...++|+.|.+.++. +...... .+..+ ++|++|++++| .+++..| ..+
T Consensus 198 ~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~-l~~~~~~----~~~~l~~~~L~~L~Ls~n-~l~~~~~~~~~~l 271 (680)
T 1ziw_A 198 FGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQ-LSTTSNT----TFLGLKWTNLTMLDLSYN-NLNVVGNDSFAWL 271 (680)
T ss_dssp CEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSC-CCEECTT----TTGGGGGSCCCEEECTTS-CCCEECTTTTTTC
T ss_pred hhhhccccccChhhHHHHHHHhhhccccEEEccCCc-ccccChh----HhhccCcCCCCEEECCCC-CcCccCcccccCc
Confidence 44444443211100000000 012344444444421 1111000 01222 23666666653 3332222 234
Q ss_pred CccceEEeccccCc---cccCCCCCcccEEEEcCCcCe---------eeeccccCCCCCccEEEEecccccchhhhhhhh
Q 048004 485 PALEMLVIEGCEEL---LVSVSSLPALCKLHIGGCKKV---------VWRRPLKLRLPKLEELEIENMKEQTYIWKSHKE 552 (943)
Q Consensus 485 ~~L~~L~l~~~~~l---~~~~~~l~~L~~L~l~~~~~~---------~~~~~~~~~l~~L~~L~l~~~~~~~~i~~~~~~ 552 (943)
++|+.|++++|... ...+..+++|+.|++++|... .+....+..+++|+.|++++|.... ....
T Consensus 272 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~----~~~~ 347 (680)
T 1ziw_A 272 PQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPG----IKSN 347 (680)
T ss_dssp TTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCC----CCTT
T ss_pred ccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCC----CChh
Confidence 55666666655422 124555666777776655322 2222345566667777776665433 2233
Q ss_pred hhhccCCccEEeecCCC-CcccchhhhhhHHhhhhhcccccccEEEeecCCCCCCCCccccCccccceEEeccCCCcccc
Q 048004 553 LLQDICSLKRLTIDSCP-KLQSLVAEEEKDQQQQLCELSCRLEYLTLSGCQGLVKLPQSSLSLNSLREIEIYKCSSLVSF 631 (943)
Q Consensus 553 ~~~~l~~L~~L~l~~~~-~L~~l~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~ 631 (943)
.+..+++|++|++++|. .+..+....+... ..++|+.|++++|......|..+..+++|++|++++|...+.+
T Consensus 348 ~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~------~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 421 (680)
T 1ziw_A 348 MFTGLINLKYLSLSNSFTSLRTLTNETFVSL------AHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQEL 421 (680)
T ss_dssp TTTTCTTCCEEECTTCBSCCCEECTTTTGGG------TTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEEC
T ss_pred HhccccCCcEEECCCCchhhhhcchhhhccc------ccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCcccc
Confidence 44556666666666653 1222221111000 0146777777777766666666777777777777777554444
Q ss_pred C--CccCCCCccEEEeccCCCCcccccccccCCCCCCCeEEEeecCCCccccCccCCCCccEEEeccCCCcccccccccc
Q 048004 632 P--EVALPSKLKKIEIRECDALKSLPEAWMCGTNSSLEILSIQGCHSLTYIAGVQLPPSLKRLEIDFCDNLRTLTVEEGI 709 (943)
Q Consensus 632 ~--~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~ 709 (943)
+ .+..+++|++|++++|......+..+ ..+++|+.|++++|..
T Consensus 422 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~--~~~~~L~~L~l~~n~l--------------------------------- 466 (680)
T 1ziw_A 422 TGQEWRGLENIFEIYLSYNKYLQLTRNSF--ALVPSLQRLMLRRVAL--------------------------------- 466 (680)
T ss_dssp CSGGGTTCTTCCEEECCSCSEEECCTTTT--TTCTTCCEEECTTSCC---------------------------------
T ss_pred CcccccCcccccEEecCCCCcceeChhhh--hcCcccccchhccccc---------------------------------
Confidence 4 24446666666666654332222222 4555666666555441
Q ss_pred ccCCCCCCCeeeeeccCCcccccccCCCCCCcCeEeecCCCCceecCCCCCCCCCcceEeecccCCCCcc----c----c
Q 048004 710 QSSSSSSSSSRSIWTCENLKFLPSGLHNLRQLQEIEIWECENLVSFPQGGLPCAKLSMLTVYGCERLKAL----P----K 781 (943)
Q Consensus 710 ~~~~~~~L~~l~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~----~----~ 781 (943)
..+..+|..+.++++|++|++++|...+..+..+..+++|++|++++|.+.+.. | .
T Consensus 467 ----------------~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~ 530 (680)
T 1ziw_A 467 ----------------KNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIY 530 (680)
T ss_dssp ----------------BCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCC
T ss_pred ----------------cccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcch
Confidence 112234667788889999999888766655566778889999999988775431 1 2
Q ss_pred ccCCCCccceEEecCCCchhhhhhhhccccCCCCCcCEEEEeecCCCceecCCCccccCCCCCCCCccceeeccCCCCCc
Q 048004 782 GLHNLTNLHSLEIHGNTKIWKSMIEWGRGFHRFSSLRELKISRCDDDMVSFPPEDIRLGTTLPLPASLTSLEIGYFPNLE 861 (943)
Q Consensus 782 ~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~ 861 (943)
.+.++++|++|++++|..... +. ..|..+++|++|++++| .+..+|.+.| ..+++|+.|++++| .++
T Consensus 531 ~~~~l~~L~~L~L~~N~l~~i--~~--~~~~~l~~L~~L~Ls~N--~l~~l~~~~~------~~l~~L~~L~L~~N-~l~ 597 (680)
T 1ziw_A 531 FLKGLSHLHILNLESNGFDEI--PV--EVFKDLFELKIIDLGLN--NLNTLPASVF------NNQVSLKSLNLQKN-LIT 597 (680)
T ss_dssp TTTTCTTCCEEECCSSCCCCC--CT--TTTTTCTTCCEEECCSS--CCCCCCTTTT------TTCTTCCEEECTTS-CCC
T ss_pred hhcCCCCCCEEECCCCCCCCC--CH--HHcccccCcceeECCCC--CCCcCCHhHh------CCCCCCCEEECCCC-cCC
Confidence 367888999999999865422 11 23788899999999887 6677877665 57889999999996 566
Q ss_pred ccccc-cc-cCCCCCeEEEcCCCCCCC
Q 048004 862 RLSSS-IV-DLQNLTSLFLYHCPKLKY 886 (943)
Q Consensus 862 ~l~~~-~~-~l~~L~~L~l~~c~~l~~ 886 (943)
.++.. +. .+++|+.|++++||-.-.
T Consensus 598 ~~~~~~~~~~~~~L~~l~l~~N~~~c~ 624 (680)
T 1ziw_A 598 SVEKKVFGPAFRNLTELDMRFNPFDCT 624 (680)
T ss_dssp BCCHHHHHHHHTTCSEEECTTCCCCBC
T ss_pred ccChhHhcccccccCEEEccCCCcccC
Confidence 66653 44 688999999998765443
No 5
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=2e-40 Score=390.59 Aligned_cols=301 Identities=15% Similarity=0.097 Sum_probs=210.1
Q ss_pred ccccEEEeecCCCCCCCCccccCccccceEEeccCCCccccCCccCCCCccEEEeccCCCCcccccccccCCCCCCCeEE
Q 048004 591 CRLEYLTLSGCQGLVKLPQSSLSLNSLREIEIYKCSSLVSFPEVALPSKLKKIEIRECDALKSLPEAWMCGTNSSLEILS 670 (943)
Q Consensus 591 ~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~ 670 (943)
++|+.|++++|.. ..+| .+..+++|++|++++|.. +.+|.+ .+++|++|++++|..+..++ + ..+++|++|+
T Consensus 285 ~~L~~L~l~~~~~-~~l~-~l~~~~~L~~L~l~~n~l-~~lp~~-~l~~L~~L~l~~n~~~~~~~--~--~~l~~L~~L~ 356 (606)
T 3vq2_A 285 ANVSAMSLAGVSI-KYLE-DVPKHFKWQSLSIIRCQL-KQFPTL-DLPFLKSLTLTMNKGSISFK--K--VALPSLSYLD 356 (606)
T ss_dssp TTCSEEEEESCCC-CCCC-CCCTTCCCSEEEEESCCC-SSCCCC-CCSSCCEEEEESCSSCEECC--C--CCCTTCCEEE
T ss_pred CCCCEEEecCccc-hhhh-hccccccCCEEEcccccC-cccccC-CCCccceeeccCCcCccchh--h--ccCCCCCEEE
Confidence 4666666666554 3344 555666666666666644 555555 56666666666664444331 1 3556666666
Q ss_pred EeecCCCccccCccCCCCccEEEeccCCCccccccccccccCCCCCCCeeeeeccCCcccccccCCCCCCcCeEeecCCC
Q 048004 671 IQGCHSLTYIAGVQLPPSLKRLEIDFCDNLRTLTVEEGIQSSSSSSSSSRSIWTCENLKFLPSGLHNLRQLQEIEIWECE 750 (943)
Q Consensus 671 l~~~~~l~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~~~L~~l~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~ 750 (943)
+++|... .++. . ......+++|+.++++++. ++.+|..+..+++|++|++++|.
T Consensus 357 ls~n~l~-~~~~--~----------------------~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~l~~L~~L~l~~n~ 410 (606)
T 3vq2_A 357 LSRNALS-FSGC--C----------------------SYSDLGTNSLRHLDLSFNG-AIIMSANFMGLEELQHLDFQHST 410 (606)
T ss_dssp CCSSCEE-EEEE--C----------------------CHHHHCCSCCCEEECCSCS-EEEECCCCTTCTTCCEEECTTSE
T ss_pred CcCCccC-CCcc--h----------------------hhhhccCCcccEeECCCCc-cccchhhccCCCCCCeeECCCCc
Confidence 6665421 1100 0 0001234456666666554 56677888999999999999997
Q ss_pred CceecC-CCCCCCCCcceEeecccCCCCccccccCCCCccceEEecCCCchhhhhhhhccccCCCCCcCEEEEeecCCCc
Q 048004 751 NLVSFP-QGGLPCAKLSMLTVYGCERLKALPKGLHNLTNLHSLEIHGNTKIWKSMIEWGRGFHRFSSLRELKISRCDDDM 829 (943)
Q Consensus 751 ~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~ls~n~~~~ 829 (943)
..+..| ..+..+++|++|++++|.+.+..|..+..+++|++|++++|...... .+..+..+++|++|++++| .+
T Consensus 411 l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~---~~~~~~~l~~L~~L~Ls~n--~l 485 (606)
T 3vq2_A 411 LKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNT---LSNVFANTTNLTFLDLSKC--QL 485 (606)
T ss_dssp EESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGE---ECSCCTTCTTCCEEECTTS--CC
T ss_pred cCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcc---hHHhhccCCCCCEEECCCC--cC
Confidence 777766 56788999999999999998888999999999999999999754321 2345889999999999997 55
Q ss_pred eecCCCccccCCCCCCCCccceeeccCCCCCcccccccccCCCCCeEEEcCCCCCCCCCCC--CCCcccceeeecCCcch
Q 048004 830 VSFPPEDIRLGTTLPLPASLTSLEIGYFPNLERLSSSIVDLQNLTSLFLYHCPKLKYFPEK--GLPSSLLELIIYRCPLI 907 (943)
Q Consensus 830 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~--~~~~~L~~L~i~~c~~l 907 (943)
..++.+.+ ..+++|++|++++|...+..|..+.++++|+.|++++|. ++.+|.. .++++|+.|++++||.
T Consensus 486 ~~~~~~~~------~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~p~~~~~l~~~L~~l~l~~N~~- 557 (606)
T 3vq2_A 486 EQISWGVF------DTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNR-IETSKGILQHFPKSLAFFNLTNNSV- 557 (606)
T ss_dssp CEECTTTT------TTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSC-CCCEESCGGGSCTTCCEEECCSCCC-
T ss_pred CccChhhh------cccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCc-CcccCHhHhhhcccCcEEEccCCCc-
Confidence 55555444 688999999999986555568888999999999999975 8888875 2245799999999998
Q ss_pred hhhhcCCCCCCCccccCcceEEECCeeeeccccc
Q 048004 908 AEKCGKDGGQYWDLLTHIPHVAIDGKSIFGDKYS 941 (943)
Q Consensus 908 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 941 (943)
.|.|...|.+.|+...+. .+.+...+.|..|
T Consensus 558 --~c~c~~~~~~~~l~~~~~-~~~~~~~~~C~~p 588 (606)
T 3vq2_A 558 --ACICEHQKFLQWVKEQKQ-FLVNVEQMTCATP 588 (606)
T ss_dssp --CCSSTTHHHHTTTTTSSS-SBSSGGGCCCC--
T ss_pred --ccCCccHHHHHHHHcCcc-cccCCccceeCCC
Confidence 688887777777765432 2333445566554
No 6
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=1.3e-40 Score=391.97 Aligned_cols=195 Identities=13% Similarity=0.079 Sum_probs=147.9
Q ss_pred cccCCCCCCcCeEeecCCCCceecCCC-CCCCCCcceEeecccCCCCccccccCCCCccceEEecCCCchhhhhhhhccc
Q 048004 732 PSGLHNLRQLQEIEIWECENLVSFPQG-GLPCAKLSMLTVYGCERLKALPKGLHNLTNLHSLEIHGNTKIWKSMIEWGRG 810 (943)
Q Consensus 732 p~~~~~l~~L~~L~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~ 810 (943)
|..+..+++|++|++++|...+..|.. +..+++|++|++++|.+.+..|..+..+++|++|++++|+......+ .+..
T Consensus 393 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~ 471 (606)
T 3t6q_A 393 TEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQ-KTNS 471 (606)
T ss_dssp TTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEEC-SSCG
T ss_pred HHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccc-cchh
Confidence 567788999999999999777666554 77889999999999999888888899999999999999975542211 1234
Q ss_pred cCCCCCcCEEEEeecCCCceecCCCccccCCCCCCCCccceeeccCCCCCcccccccccCCCCCeEEEcCCCCCCCCCCC
Q 048004 811 FHRFSSLRELKISRCDDDMVSFPPEDIRLGTTLPLPASLTSLEIGYFPNLERLSSSIVDLQNLTSLFLYHCPKLKYFPEK 890 (943)
Q Consensus 811 ~~~l~~L~~L~ls~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~ 890 (943)
+..+++|++|++++| .+..++...+ ..+++|++|++++|......|..+.++++| .|++++| .++.+++.
T Consensus 472 ~~~l~~L~~L~Ls~n--~l~~~~~~~~------~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N-~l~~~~~~ 541 (606)
T 3t6q_A 472 LQTLGRLEILVLSFC--DLSSIDQHAF------TSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASN-HISIILPS 541 (606)
T ss_dssp GGGCTTCCEEECTTS--CCCEECTTTT------TTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSS-CCCCCCGG
T ss_pred hccCCCccEEECCCC--ccCccChhhh------ccccCCCEEECCCCccCcCChhHhCccccc-EEECcCC-cccccCHh
Confidence 788999999999997 5555554443 678999999999987666677788999999 9999997 56666654
Q ss_pred CC--CcccceeeecCCcchhhhhcCCCCCCCccccCcceEEECCeeeeccccc
Q 048004 891 GL--PSSLLELIIYRCPLIAEKCGKDGGQYWDLLTHIPHVAIDGKSIFGDKYS 941 (943)
Q Consensus 891 ~~--~~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 941 (943)
.+ +++|+.|++++||. .|.|...+.+.|+..... .+.+...+.|+.|
T Consensus 542 ~~~~l~~L~~L~l~~N~~---~c~c~~~~~~~w~~~~~~-~~~~~~~~~C~~p 590 (606)
T 3t6q_A 542 LLPILSQQRTINLRQNPL---DCTCSNIYFLEWYKENMQ-KLEDTEDTLCENP 590 (606)
T ss_dssp GHHHHHTSSEEECTTCCE---ECSGGGHHHHHHHHHCGG-GEECGGGCBEEES
T ss_pred hcccCCCCCEEeCCCCCc---cccCCcHHHHHHHHhCcc-cccCCCCCeeCCc
Confidence 43 68999999999998 577776666666653221 1223334555544
No 7
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=2e-38 Score=373.41 Aligned_cols=507 Identities=13% Similarity=0.101 Sum_probs=262.4
Q ss_pred cccEEEecCcccccc-CccccCCCcccEEecCCCCCccc-chhHhhcccCcEEecCCCcchhhchHhhcccccccccccC
Q 048004 178 RLRAFSLRGYYIFEL-PDSVGDLRYLRYLNLCGTKIRTL-PESVNKLYNLHSLLLEDCDRLKKLCADMGNLAKLHHLKNS 255 (943)
Q Consensus 178 ~L~~L~L~~~~i~~l-p~~~~~L~~L~~L~L~~n~i~~l-p~~i~~L~~L~~L~L~~~~~l~~lp~~~~~L~~L~~L~l~ 255 (943)
.+++|++++|.++.+ |.+|+++++|++|+|++|.++.+ |.+|+++++|++|++++|......|..|+++++|++|+++
T Consensus 34 ~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 113 (606)
T 3t6q_A 34 STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFI 113 (606)
T ss_dssp TCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECT
T ss_pred cCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeecc
Confidence 689999999999888 56899999999999999999866 6778999999999999976555567789999999999999
Q ss_pred CCCccccC-CcccCCccccccccceeeccCCCCCchhhhcccccCCeeeeccccccCCcccchhhhcCCCCCCCeEEEEe
Q 048004 256 NTKSLEEM-PVGIGKLTSLQTLCNFVVGKGSGSGLRELKLLTHLHGTLNISKLENVKCVGDAMEAQMDGKKNLKELSLKW 334 (943)
Q Consensus 256 ~~~~~~~~-p~~i~~L~~L~~L~~~~~~~~~~~~l~~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~ 334 (943)
+|. +..+ |..++.+++|++|+.... .+.... .+ .+..+++|+.|++++
T Consensus 114 ~n~-i~~l~~~~~~~l~~L~~L~L~~n------------------------~l~~~~-----~~-~~~~l~~L~~L~L~~ 162 (606)
T 3t6q_A 114 QTG-ISSIDFIPLHNQKTLESLYLGSN------------------------HISSIK-----LP-KGFPTEKLKVLDFQN 162 (606)
T ss_dssp TSC-CSCGGGSCCTTCTTCCEEECCSS------------------------CCCCCC-----CC-TTCCCTTCCEEECCS
T ss_pred ccC-cccCCcchhccCCcccEEECCCC------------------------cccccC-----cc-cccCCcccCEEEccc
Confidence 998 6665 455788888887732211 111100 01 122245555555544
Q ss_pred ecCCCCCCCcchhcHHhhhccCCCCCCcceEEEeccCCCCCC-cCcCCCCCCCcc--EEEEecCCCCCCCCCCCCCCCCC
Q 048004 335 TCSTDGSSSREAETEMGVLDMLKPHTNLEQFCIKGYGGMKFP-TWLGDSLFSNLV--TLEFEDCGMCTALPSVGQLPSLK 411 (943)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p-~~~~~~~l~~L~--~L~L~~~~~~~~l~~l~~l~~L~ 411 (943)
| ....++ .++.. +++|+ .|++++|.+.+..|......+|+
T Consensus 163 n-----------------------------------~l~~~~~~~~~~--l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~ 205 (606)
T 3t6q_A 163 N-----------------------------------AIHYLSKEDMSS--LQQATNLSLNLNGNDIAGIEPGAFDSAVFQ 205 (606)
T ss_dssp S-----------------------------------CCCEECHHHHHT--TTTCCSEEEECTTCCCCEECTTTTTTCEEE
T ss_pred C-----------------------------------cccccChhhhhh--hcccceeEEecCCCccCccChhHhhhcccc
Confidence 2 222221 11221 45566 66777777666666444556777
Q ss_pred eeEEccccCeeEeCccccCCCCCccceeecccccccccccccCCcccccCCC--cccEEecccCcccccCCC---CCCCc
Q 048004 412 HLTVRGMSRVKRLGSEFCGNDPPCLETLRFENMREWEDWIPHGSGQRVEGFP--KLRELHILRCSKLKGTFP---EHLPA 486 (943)
Q Consensus 412 ~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~--~L~~L~l~~c~~l~~~~p---~~l~~ 486 (943)
.|++++|..+... +.+-....++.+.+..+.......... ..+..+. +|+.|++++| .+++..+ ..+++
T Consensus 206 ~L~l~~~~~~~~~---~~~l~~~~l~~l~~~~~~~~~~~~i~~--~~~~~l~~~~L~~L~l~~n-~l~~~~~~~~~~l~~ 279 (606)
T 3t6q_A 206 SLNFGGTQNLLVI---FKGLKNSTIQSLWLGTFEDMDDEDISP--AVFEGLCEMSVESINLQKH-YFFNISSNTFHCFSG 279 (606)
T ss_dssp EEECTTCSCHHHH---HHHTTTCEEEEEECCCCTTSCCCCCCG--GGGGGGGGSEEEEEECTTC-CCSSCCTTTTTTCTT
T ss_pred ccccCCchhHHHH---hhhccccchhheechhhccccccccCh--hHhchhhcCceeEEEeecC-ccCccCHHHhccccC
Confidence 7777766422211 111011122233332222211110000 0011121 6777777774 4542222 22344
Q ss_pred cceEEeccccC--ccccCCCCCcccEEEEcCCcCeeeeccccCCCCCccEEEEecccccchhhhhhhhhhhccCCccEEe
Q 048004 487 LEMLVIEGCEE--LLVSVSSLPALCKLHIGGCKKVVWRRPLKLRLPKLEELEIENMKEQTYIWKSHKELLQDICSLKRLT 564 (943)
Q Consensus 487 L~~L~l~~~~~--l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~i~~~~~~~~~~l~~L~~L~ 564 (943)
|+.|++++|.. ++..+..+++|++|++++|.+....+..+..+++|+.|++++|.....+ +...+..+
T Consensus 280 L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~---~~~~~~~l------- 349 (606)
T 3t6q_A 280 LQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLEL---GTGCLENL------- 349 (606)
T ss_dssp CSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBC---CSSTTTTC-------
T ss_pred CCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCccccc---chhhhhcc-------
Confidence 44444444431 2223334445555555555444444444444444444444444332111 11112223
Q ss_pred ecCCCCcccchhhhhhHHhhhhhcccccccEEEeecCCCCCCC--CccccCccccceEEeccCCCccccC-CccCCCCcc
Q 048004 565 IDSCPKLQSLVAEEEKDQQQQLCELSCRLEYLTLSGCQGLVKL--PQSSLSLNSLREIEIYKCSSLVSFP-EVALPSKLK 641 (943)
Q Consensus 565 l~~~~~L~~l~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~l--~~~~~~l~~L~~L~l~~~~~l~~~~-~~~~~~~L~ 641 (943)
++|++|++++|...... +..+..+++|++|++++|......+ .+..+++|+
T Consensus 350 --------------------------~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 403 (606)
T 3t6q_A 350 --------------------------ENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLE 403 (606)
T ss_dssp --------------------------TTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCS
T ss_pred --------------------------CcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCC
Confidence 46666666666554432 4556667777777777764433333 244566777
Q ss_pred EEEeccCCCCcccccccccCCCCCCCeEEEeecCCCccccCc-cCCCCccEEEeccCCCccccccccccccCCCCCCCee
Q 048004 642 KIEIRECDALKSLPEAWMCGTNSSLEILSIQGCHSLTYIAGV-QLPPSLKRLEIDFCDNLRTLTVEEGIQSSSSSSSSSR 720 (943)
Q Consensus 642 ~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~~~L~~l 720 (943)
+|++++|......+...+ ..+++|++|++++|......+.. .-.++|+.|+++++. ++...+
T Consensus 404 ~L~l~~n~l~~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~--------------- 466 (606)
T 3t6q_A 404 LLDLAFTRLKVKDAQSPF-QNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNH-FPKGNI--------------- 466 (606)
T ss_dssp EEECTTCCEECCTTCCTT-TTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCB-CGGGEE---------------
T ss_pred eEECCCCcCCCcccchhh-hCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCC-CCcccc---------------
Confidence 777777654444443322 56677777777776532211110 001112222222211 000000
Q ss_pred eeeccCCcccccccCCCCCCcCeEeecCCCCceecCCCCCCCCCcceEeecccCCCCccccccCCCCccceEEecCCCch
Q 048004 721 SIWTCENLKFLPSGLHNLRQLQEIEIWECENLVSFPQGGLPCAKLSMLTVYGCERLKALPKGLHNLTNLHSLEIHGNTKI 800 (943)
Q Consensus 721 ~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~ 800 (943)
..+..+..+++|++|++++|...+..|..+..+++|++|++++|.+.+..|..+..+++| +|++++|...
T Consensus 467 ---------~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~ 536 (606)
T 3t6q_A 467 ---------QKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHIS 536 (606)
T ss_dssp ---------CSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCC
T ss_pred ---------ccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCccc
Confidence 001234445555555555555555445555555555555555555555555555555555 5555555433
Q ss_pred hhhhhhhccccCCCCCcCEEEEeec
Q 048004 801 WKSMIEWGRGFHRFSSLRELKISRC 825 (943)
Q Consensus 801 ~~~~~~~~~~~~~l~~L~~L~ls~n 825 (943)
... +..+..+++|++|++++|
T Consensus 537 ~~~----~~~~~~l~~L~~L~l~~N 557 (606)
T 3t6q_A 537 IIL----PSLLPILSQQRTINLRQN 557 (606)
T ss_dssp CCC----GGGHHHHHTSSEEECTTC
T ss_pred ccC----HhhcccCCCCCEEeCCCC
Confidence 211 111344455555555554
No 8
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=2.6e-38 Score=372.42 Aligned_cols=201 Identities=16% Similarity=0.103 Sum_probs=123.6
Q ss_pred CcccEEEecCccccccCc-cccCCCcccEEecCCCCCccc-chhHhhcccCcEEecCCCcchhhchHhhccccccccccc
Q 048004 177 QRLRAFSLRGYYIFELPD-SVGDLRYLRYLNLCGTKIRTL-PESVNKLYNLHSLLLEDCDRLKKLCADMGNLAKLHHLKN 254 (943)
Q Consensus 177 ~~L~~L~L~~~~i~~lp~-~~~~L~~L~~L~L~~n~i~~l-p~~i~~L~~L~~L~L~~~~~l~~lp~~~~~L~~L~~L~l 254 (943)
+++++|++++|.++.++. .|.++++|++|+|++|.++.+ |.+|+++++|++|++++|......|..|+++++|++|++
T Consensus 32 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L 111 (606)
T 3vq2_A 32 SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVA 111 (606)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEEC
T ss_pred CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEc
Confidence 678888888888877754 788888888888888888876 456788888888888886544444777888888888888
Q ss_pred CCCCccccCC-cccCCccccccccceeeccCCCCCchhhhcccccCCeeeeccccccCCcccchhhhcCCCCCCCeEEEE
Q 048004 255 SNTKSLEEMP-VGIGKLTSLQTLCNFVVGKGSGSGLRELKLLTHLHGTLNISKLENVKCVGDAMEAQMDGKKNLKELSLK 333 (943)
Q Consensus 255 ~~~~~~~~~p-~~i~~L~~L~~L~~~~~~~~~~~~l~~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~ 333 (943)
++|. +..+| ..++++++|++|+.... .+. ...++..+.++++|+.|+++
T Consensus 112 ~~n~-l~~~~~~~~~~l~~L~~L~L~~n------------------------~l~-----~~~lp~~~~~l~~L~~L~Ls 161 (606)
T 3vq2_A 112 VETK-LASLESFPIGQLITLKKLNVAHN------------------------FIH-----SCKLPAYFSNLTNLVHVDLS 161 (606)
T ss_dssp TTSC-CCCSSSSCCTTCTTCCEEECCSS------------------------CCC-----CCCCCGGGGTCTTCCEEECC
T ss_pred cCCc-cccccccccCCCCCCCEEeCCCC------------------------ccc-----ceechHhHhhcCCCCEEEcc
Confidence 8887 66665 45888888888732211 111 11134456677777777777
Q ss_pred eecCCCCCCCcchhcHHhhhccCCCCCCcceEEEeccCCCCCCcCcCCCCCCCccEEEEecCCCCCC-CC-CCCCCCCCC
Q 048004 334 WTCSTDGSSSREAETEMGVLDMLKPHTNLEQFCIKGYGGMKFPTWLGDSLFSNLVTLEFEDCGMCTA-LP-SVGQLPSLK 411 (943)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~-l~-~l~~l~~L~ 411 (943)
+|....... .....+..++ ..+..+++.++....+|..... ..+|+.|++++|.+... .| .++.+++|+
T Consensus 162 ~n~l~~~~~-----~~~~~l~~L~--~~l~~L~l~~n~l~~~~~~~~~--~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~ 232 (606)
T 3vq2_A 162 YNYIQTITV-----NDLQFLRENP--QVNLSLDMSLNPIDFIQDQAFQ--GIKLHELTLRGNFNSSNIMKTCLQNLAGLH 232 (606)
T ss_dssp SSCCCEECT-----TTTHHHHHCT--TCCCEEECTTCCCCEECTTTTT--TCEEEEEEEESCCSCHHHHHHHHHTTTTCE
T ss_pred CCcceecCh-----hhhhhhhccc--cccceeeccCCCcceeCccccc--CceeeeeeccCCccchhHHHHHhccccccc
Confidence 643221100 0000111110 1134566666666666655543 23677777777765422 22 455566666
Q ss_pred eeEEc
Q 048004 412 HLTVR 416 (943)
Q Consensus 412 ~L~l~ 416 (943)
.+.+.
T Consensus 233 ~l~l~ 237 (606)
T 3vq2_A 233 VHRLI 237 (606)
T ss_dssp EEEEE
T ss_pred ccccc
Confidence 65554
No 9
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=9.5e-37 Score=370.52 Aligned_cols=513 Identities=15% Similarity=0.087 Sum_probs=274.1
Q ss_pred CCcccEEEecCcccccc-CccccCCCcccEEecCCCC-Cccc-chhHhhcccCcEEecCCCcchhhchHhhccccccccc
Q 048004 176 PQRLRAFSLRGYYIFEL-PDSVGDLRYLRYLNLCGTK-IRTL-PESVNKLYNLHSLLLEDCDRLKKLCADMGNLAKLHHL 252 (943)
Q Consensus 176 l~~L~~L~L~~~~i~~l-p~~~~~L~~L~~L~L~~n~-i~~l-p~~i~~L~~L~~L~L~~~~~l~~lp~~~~~L~~L~~L 252 (943)
.+++++|+|++|.++.+ |.+|.++++|++|+|++|. +..+ |.+|+++++|++|+|++|......|..|+++++|++|
T Consensus 23 p~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 102 (844)
T 3j0a_A 23 LNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFEL 102 (844)
T ss_dssp CTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCE
T ss_pred CCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEe
Confidence 36788999999988776 5778899999999999884 4577 5778899999999999865555558888999999999
Q ss_pred ccCCCCccccCCcc--cCCccccccccceeeccCCCCCchhhhcccccCCeeeeccccccCCcccchhhhcCCCCCCCeE
Q 048004 253 KNSNTKSLEEMPVG--IGKLTSLQTLCNFVVGKGSGSGLRELKLLTHLHGTLNISKLENVKCVGDAMEAQMDGKKNLKEL 330 (943)
Q Consensus 253 ~l~~~~~~~~~p~~--i~~L~~L~~L~~~~~~~~~~~~l~~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L 330 (943)
++++|.....+|.. ++++++|++|+...+ .+... ..+..+.++++|+.|
T Consensus 103 ~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N------------------------~l~~~-----~~~~~~~~L~~L~~L 153 (844)
T 3j0a_A 103 RLYFCGLSDAVLKDGYFRNLKALTRLDLSKN------------------------QIRSL-----YLHPSFGKLNSLKSI 153 (844)
T ss_dssp ECTTCCCSSCCSTTCCCSSCSSCCEEEEESC------------------------CCCCC-----CCCGGGGTCSSCCEE
T ss_pred eCcCCCCCcccccCccccccCCCCEEECCCC------------------------ccccc-----ccchhHhhCCCCCEE
Confidence 99988843445554 778888887733221 11111 112235566677777
Q ss_pred EEEeecCCCCCCCcchhcHHhhhccCCCCCCcceEEEeccCCCCCCcCcCCCCC--CCccEEEEecCCCCCCCC-CCCCC
Q 048004 331 SLKWTCSTDGSSSREAETEMGVLDMLKPHTNLEQFCIKGYGGMKFPTWLGDSLF--SNLVTLEFEDCGMCTALP-SVGQL 407 (943)
Q Consensus 331 ~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l--~~L~~L~L~~~~~~~~l~-~l~~l 407 (943)
++++|..... .|..+.. + ++|+.|++++|.+....| .++.+
T Consensus 154 ~Ls~N~i~~~----------------------------------~~~~l~~--l~~~~L~~L~L~~n~l~~~~~~~~~~~ 197 (844)
T 3j0a_A 154 DFSSNQIFLV----------------------------------CEHELEP--LQGKTLSFFSLAANSLYSRVSVDWGKC 197 (844)
T ss_dssp EEESSCCCCC----------------------------------CSGGGHH--HHHCSSCCCEECCSBSCCCCCCCCCSS
T ss_pred ECCCCcCCee----------------------------------CHHHccc--ccCCccceEECCCCccccccccchhhc
Confidence 7765422111 1111111 1 345555555555544333 33333
Q ss_pred CC------CCeeEEccccCeeEeCccccCCCCCccceeecccccccccccccCCcccccCCCcccEEecccCcccccCCC
Q 048004 408 PS------LKHLTVRGMSRVKRLGSEFCGNDPPCLETLRFENMREWEDWIPHGSGQRVEGFPKLRELHILRCSKLKGTFP 481 (943)
Q Consensus 408 ~~------L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p 481 (943)
++ |+.|++++|......+..+... ....+++.+.+..+ .....+.
T Consensus 198 ~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~----------------------------l~~~~l~~L~l~~~-~~~~~~~ 248 (844)
T 3j0a_A 198 MNPFRNMVLEILDVSGNGWTVDITGNFSNA----------------------------ISKSQAFSLILAHH-IMGAGFG 248 (844)
T ss_dssp SCTTTTCCBSEEBCSSCCSSTTTTSGGGGT----------------------------SCSCCBSEEECCSS-CCBCSSS
T ss_pred CCccccCceeEEecCCCcCchhHHHHHHhh----------------------------cCcccccceecccc-ccccccc
Confidence 32 5566665553221111111110 01123333333321 1100000
Q ss_pred CCCCccceEEeccccCccccCCC--CCcccEEEEcCCcCeeeeccccCCCCCccEEEEecccccchhhhhhhhhhhccCC
Q 048004 482 EHLPALEMLVIEGCEELLVSVSS--LPALCKLHIGGCKKVVWRRPLKLRLPKLEELEIENMKEQTYIWKSHKELLQDICS 559 (943)
Q Consensus 482 ~~l~~L~~L~l~~~~~l~~~~~~--l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~i~~~~~~~~~~l~~ 559 (943)
..++... ....+.. .++|+.|++++|.+....+..+..+++|+.|++++|..... .+..+..+
T Consensus 249 --~~~l~~~-------~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~----~~~~~~~l-- 313 (844)
T 3j0a_A 249 --FHNIKDP-------DQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKI----ADEAFYGL-- 313 (844)
T ss_dssp --CSSSTTG-------GGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEE----CTTTTTTC--
T ss_pred --ccccCCC-------ChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCC----ChHHhcCC--
Confidence 0000000 0001111 24556666666666555555556666666666665543221 01111111
Q ss_pred ccEEeecCCCCcccchhhhhhHHhhhhhcccccccEEEeecCCCCCCCCccccCccccceEEeccCCCccccCC--ccCC
Q 048004 560 LKRLTIDSCPKLQSLVAEEEKDQQQQLCELSCRLEYLTLSGCQGLVKLPQSSLSLNSLREIEIYKCSSLVSFPE--VALP 637 (943)
Q Consensus 560 L~~L~l~~~~~L~~l~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~~~--~~~~ 637 (943)
++|++|++++|......|..+..+++|+.|++++|. +..++. +..+
T Consensus 314 -------------------------------~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~~~l 361 (844)
T 3j0a_A 314 -------------------------------DNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNH-IAIIQDQTFKFL 361 (844)
T ss_dssp -------------------------------SSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCC-CCCCCSSCSCSC
T ss_pred -------------------------------CCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCC-CCccChhhhcCC
Confidence 345555555554444445556666666666666663 344432 3446
Q ss_pred CCccEEEeccCCCCcccccccccCCCCCCCeEEEeecCCCccccCccCCCCccEEEeccCCCccccccccccccCCCCCC
Q 048004 638 SKLKKIEIRECDALKSLPEAWMCGTNSSLEILSIQGCHSLTYIAGVQLPPSLKRLEIDFCDNLRTLTVEEGIQSSSSSSS 717 (943)
Q Consensus 638 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~~~L 717 (943)
++|++|++++|. ++.++ .+++|+.|++++|.. ..++.. ..+++.++++++ +++.+.
T Consensus 362 ~~L~~L~Ls~N~-l~~i~------~~~~L~~L~l~~N~l-~~l~~~--~~~l~~L~ls~N-~l~~l~------------- 417 (844)
T 3j0a_A 362 EKLQTLDLRDNA-LTTIH------FIPSIPDIFLSGNKL-VTLPKI--NLTANLIHLSEN-RLENLD------------- 417 (844)
T ss_dssp CCCCEEEEETCC-SCCCS------SCCSCSEEEEESCCC-CCCCCC--CTTCCEEECCSC-CCCSST-------------
T ss_pred CCCCEEECCCCC-CCccc------CCCCcchhccCCCCc-cccccc--ccccceeecccC-ccccCc-------------
Confidence 666666666643 33332 246677777777653 233321 222333333321 111100
Q ss_pred CeeeeeccCCcccccccCCCCCCcCeEeecCCCCceecCC-CCCCCCCcceEeecccCCC-----CccccccCCCCccce
Q 048004 718 SSRSIWTCENLKFLPSGLHNLRQLQEIEIWECENLVSFPQ-GGLPCAKLSMLTVYGCERL-----KALPKGLHNLTNLHS 791 (943)
Q Consensus 718 ~~l~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~-----~~~~~~l~~l~~L~~ 791 (943)
.+..+.++++|++|++++|...+..+. .+..+++|+.|++++|.+. +..+..+.++++|+.
T Consensus 418 -------------~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~ 484 (844)
T 3j0a_A 418 -------------ILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQV 484 (844)
T ss_dssp -------------THHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEEC
T ss_pred -------------hhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccE
Confidence 012245678888888888866544332 2445678888888888765 333455777888888
Q ss_pred EEecCCCchhhhhhhhccccCCCCCcCEEEEeecCCCceecCCCccccCCCCCCCCccceeeccCCCCCcccccccccCC
Q 048004 792 LEIHGNTKIWKSMIEWGRGFHRFSSLRELKISRCDDDMVSFPPEDIRLGTTLPLPASLTSLEIGYFPNLERLSSSIVDLQ 871 (943)
Q Consensus 792 L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~l~ 871 (943)
|++++|..... .+..+..+++|++|+|++| .+..+|...+ .++|+.|++++|...+..| ..++
T Consensus 485 L~Ls~N~l~~~----~~~~~~~l~~L~~L~Ls~N--~l~~l~~~~~--------~~~L~~L~Ls~N~l~~~~~---~~~~ 547 (844)
T 3j0a_A 485 LYLNHNYLNSL----PPGVFSHLTALRGLSLNSN--RLTVLSHNDL--------PANLEILDISRNQLLAPNP---DVFV 547 (844)
T ss_dssp CCCCHHHHTTC----CTTSSSSCCSCSEEEEESC--CCSSCCCCCC--------CSCCCEEEEEEECCCCCCS---CCCS
T ss_pred EECCCCccccc----ChhHccchhhhheeECCCC--CCCccChhhh--------hccccEEECCCCcCCCCCh---hHhC
Confidence 88888853321 1223677788888888876 5555555442 2566666666653322222 2234
Q ss_pred CCCeEEEcCCCC
Q 048004 872 NLTSLFLYHCPK 883 (943)
Q Consensus 872 ~L~~L~l~~c~~ 883 (943)
+|+.|+++++|-
T Consensus 548 ~L~~l~l~~Np~ 559 (844)
T 3j0a_A 548 SLSVLDITHNKF 559 (844)
T ss_dssp SCCEEEEEEECC
T ss_pred CcCEEEecCCCc
Confidence 555555555443
No 10
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=2.3e-34 Score=336.56 Aligned_cols=283 Identities=16% Similarity=0.118 Sum_probs=182.8
Q ss_pred cccEEEeecC-CCCCCCCccccCccccceEEeccCCCccccCC-ccCCCCccEEEeccCCCCcccccccccCCCCCCCeE
Q 048004 592 RLEYLTLSGC-QGLVKLPQSSLSLNSLREIEIYKCSSLVSFPE-VALPSKLKKIEIRECDALKSLPEAWMCGTNSSLEIL 669 (943)
Q Consensus 592 ~L~~L~l~~~-~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L 669 (943)
.++.++++++ .....++..+..+++|+.|++++|. +..+|. ...+ +|++|++++|.. ..+|. ..+++|+.|
T Consensus 258 ~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-l~~l~~~~~~~-~L~~L~l~~n~~-~~l~~----~~l~~L~~L 330 (570)
T 2z63_A 258 TIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVT-IERVKDFSYNF-GWQHLELVNCKF-GQFPT----LKLKSLKRL 330 (570)
T ss_dssp EEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCE-ECSCCBCCSCC-CCSEEEEESCBC-SSCCB----CBCSSCCEE
T ss_pred chhhhhhhcchhhhhhchhhhcCcCcccEEEecCcc-chhhhhhhccC-CccEEeeccCcc-cccCc----ccccccCEE
Confidence 5677777777 4445667777888888888888874 445654 3334 888888888654 35554 356788888
Q ss_pred EEeecCCCccccCccCCCCccEEEeccCCCccccccccccccCCCCCCCeeeeeccCCcccccccCCCCCCcCeEeecCC
Q 048004 670 SIQGCHSLTYIAGVQLPPSLKRLEIDFCDNLRTLTVEEGIQSSSSSSSSSRSIWTCENLKFLPSGLHNLRQLQEIEIWEC 749 (943)
Q Consensus 670 ~l~~~~~l~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~~~L~~l~l~~~~~l~~lp~~~~~l~~L~~L~l~~~ 749 (943)
++++|.....++. ...++|+.|+++++. ++.. ...|..+.++++|++|++++|
T Consensus 331 ~l~~n~~~~~~~~-~~~~~L~~L~l~~n~-l~~~-------------------------~~~~~~~~~~~~L~~L~l~~n 383 (570)
T 2z63_A 331 TFTSNKGGNAFSE-VDLPSLEFLDLSRNG-LSFK-------------------------GCCSQSDFGTTSLKYLDLSFN 383 (570)
T ss_dssp EEESCBSCCBCCC-CBCTTCCEEECCSSC-CBEE-------------------------EEEEHHHHTCSCCCEEECCSC
T ss_pred eCcCCcccccccc-ccCCCCCEEeCcCCc-cCcc-------------------------ccccccccccCccCEEECCCC
Confidence 8888875444333 222335555544432 1110 112455667788888888887
Q ss_pred CCceecCCCCCCCCCcceEeecccCCCCccc-cccCCCCccceEEecCCCchhhhhhhhccccCCCCCcCEEEEeecCCC
Q 048004 750 ENLVSFPQGGLPCAKLSMLTVYGCERLKALP-KGLHNLTNLHSLEIHGNTKIWKSMIEWGRGFHRFSSLRELKISRCDDD 828 (943)
Q Consensus 750 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~ls~n~~~ 828 (943)
...+ ++..+..+++|++|++++|.+.+..| ..+..+++|++|++++|..... .+..+..+++|++|++++|...
T Consensus 384 ~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~ 458 (570)
T 2z63_A 384 GVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVA----FNGIFNGLSSLEVLKMAGNSFQ 458 (570)
T ss_dssp SEEE-EEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEEC----CTTTTTTCTTCCEEECTTCEEG
T ss_pred cccc-ccccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCccccc----chhhhhcCCcCcEEECcCCcCc
Confidence 5444 33336677788888888877666554 4567788888888888864432 1233677788888888886222
Q ss_pred ceecCCCccccCCCCCCCCccceeeccCCCCCcccccccccCCCCCeEEEcCCCCCCCCCCCCC--CcccceeeecCCcc
Q 048004 829 MVSFPPEDIRLGTTLPLPASLTSLEIGYFPNLERLSSSIVDLQNLTSLFLYHCPKLKYFPEKGL--PSSLLELIIYRCPL 906 (943)
Q Consensus 829 ~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~--~~~L~~L~i~~c~~ 906 (943)
...+|... ..+++|++|++++|...+..|..+..+++|+.|++++| .++.+++..+ +++|+.|++++||.
T Consensus 459 ~~~~p~~~-------~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N~~ 530 (570)
T 2z63_A 459 ENFLPDIF-------TELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASN-QLKSVPDGIFDRLTSLQKIWLHTNPW 530 (570)
T ss_dssp GGEECSCC-------TTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred cccchhhh-------hcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCC-cCCCCCHHHhhcccCCcEEEecCCcc
Confidence 23455433 57788888888887544444667788888888888886 5666665433 67888888888886
Q ss_pred hhhhhcCCCCCCC-ccccC
Q 048004 907 IAEKCGKDGGQYW-DLLTH 924 (943)
Q Consensus 907 l~~~~~~~~~~~~-~~~~~ 924 (943)
.|.+...+.+ .|+..
T Consensus 531 ---~~~~~~~~~~~~wl~~ 546 (570)
T 2z63_A 531 ---DCSCPRIDYLSRWLNK 546 (570)
T ss_dssp ---CCCTTTTHHHHHHHHH
T ss_pred ---cCCCcchHHHHHHHHh
Confidence 4666655544 44443
No 11
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=3e-33 Score=339.84 Aligned_cols=515 Identities=17% Similarity=0.128 Sum_probs=270.4
Q ss_pred CCCCcceeeeecccCCCCCCCCCCcccccc-CCCcccEEEecCcc-cccc-CccccCCCcccEEecCCCCCccc-chhHh
Q 048004 145 DIQHLRTFLPVMLTNSRPGFLAPSILPKLL-KPQRLRAFSLRGYY-IFEL-PDSVGDLRYLRYLNLCGTKIRTL-PESVN 220 (943)
Q Consensus 145 ~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~-~l~~L~~L~L~~~~-i~~l-p~~~~~L~~L~~L~L~~n~i~~l-p~~i~ 220 (943)
-.++++.|.+..+. + ..+.+..+ ++++|++|+|++|. +..+ |.+|+++++|++|+|++|.++.+ |..|+
T Consensus 22 lp~~l~~LdLs~N~------i-~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~ 94 (844)
T 3j0a_A 22 VLNTTERLLLSFNY------I-RTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQ 94 (844)
T ss_dssp SCTTCCEEEEESCC------C-CEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSC
T ss_pred CCCCcCEEECCCCc------C-CccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHcc
Confidence 34678888776542 2 23434444 99999999999995 5677 68899999999999999999976 78899
Q ss_pred hcccCcEEecCCCcchhhchHh--hcccccccccccCCCCccccCC--cccCCccccccccceeeccCCCCCchhhhccc
Q 048004 221 KLYNLHSLLLEDCDRLKKLCAD--MGNLAKLHHLKNSNTKSLEEMP--VGIGKLTSLQTLCNFVVGKGSGSGLRELKLLT 296 (943)
Q Consensus 221 ~L~~L~~L~L~~~~~l~~lp~~--~~~L~~L~~L~l~~~~~~~~~p--~~i~~L~~L~~L~~~~~~~~~~~~l~~l~~L~ 296 (943)
++++|++|+|++|.....+|.. |+++++|++|++++|. +..++ ..++++++|++|+...+.
T Consensus 95 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~-l~~~~~~~~~~~L~~L~~L~Ls~N~-------------- 159 (844)
T 3j0a_A 95 GLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQ-IRSLYLHPSFGKLNSLKSIDFSSNQ-------------- 159 (844)
T ss_dssp SCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCC-CCCCCCCGGGGTCSSCCEEEEESSC--------------
T ss_pred CCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCc-ccccccchhHhhCCCCCEEECCCCc--------------
Confidence 9999999999997655556665 8999999999999998 55543 458999999999433221
Q ss_pred ccCCeeeeccccccCCcccchhhhcCCC--CCCCeEEEEeecCCCCCCCcchhcHHhhhccCCCCCCcceEEEeccCCCC
Q 048004 297 HLHGTLNISKLENVKCVGDAMEAQMDGK--KNLKELSLKWTCSTDGSSSREAETEMGVLDMLKPHTNLEQFCIKGYGGMK 374 (943)
Q Consensus 297 ~L~~~l~~~~l~~~~~~~~~~~~~l~~~--~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~ 374 (943)
+... .+..+..+ ++|+.|+++.|.... .
T Consensus 160 ----------i~~~------~~~~l~~l~~~~L~~L~L~~n~l~~----------------------------------~ 189 (844)
T 3j0a_A 160 ----------IFLV------CEHELEPLQGKTLSFFSLAANSLYS----------------------------------R 189 (844)
T ss_dssp ----------CCCC------CSGGGHHHHHCSSCCCEECCSBSCC----------------------------------C
T ss_pred ----------CCee------CHHHcccccCCccceEECCCCcccc----------------------------------c
Confidence 1111 11112222 567777776542221 1
Q ss_pred CCcCcCC----CCCCCccEEEEecCCCCCCCC-CC---CCCCCCCeeEEccccCeeEeCccccCCCCCccceeecccccc
Q 048004 375 FPTWLGD----SLFSNLVTLEFEDCGMCTALP-SV---GQLPSLKHLTVRGMSRVKRLGSEFCGNDPPCLETLRFENMRE 446 (943)
Q Consensus 375 ~p~~~~~----~~l~~L~~L~L~~~~~~~~l~-~l---~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 446 (943)
.|..+.. .....|+.|++++|.+....+ .+ .....++.|.+..+.... .+ .+..++...
T Consensus 190 ~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~----~~---~~~~l~~~~------ 256 (844)
T 3j0a_A 190 VSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGA----GF---GFHNIKDPD------ 256 (844)
T ss_dssp CCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBC----SS---SCSSSTTGG------
T ss_pred cccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccc----cc---cccccCCCC------
Confidence 1111110 001248888888887765544 22 223566777766332110 00 011111100
Q ss_pred cccccccCCcccccCCCcccEEecccCcccccCCCCCCCccceEEeccccCccccCCCCCcccEEEEcCCcCeeeecccc
Q 048004 447 WEDWIPHGSGQRVEGFPKLRELHILRCSKLKGTFPEHLPALEMLVIEGCEELLVSVSSLPALCKLHIGGCKKVVWRRPLK 526 (943)
Q Consensus 447 l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~~l~~L~~L~l~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~ 526 (943)
.... .....++|+.|++++| .+.+..|. .+..+++|+.|++++|.+....+..+
T Consensus 257 -----~~~f--~~l~~~~L~~L~Ls~n-~l~~~~~~------------------~~~~l~~L~~L~L~~n~i~~~~~~~~ 310 (844)
T 3j0a_A 257 -----QNTF--AGLARSSVRHLDLSHG-FVFSLNSR------------------VFETLKDLKVLNLAYNKINKIADEAF 310 (844)
T ss_dssp -----GTTT--TTTTTSCCCEEECTTC-CCCEECSC------------------CSSSCCCCCEEEEESCCCCEECTTTT
T ss_pred -----hhhh--hccccCCccEEECCCC-cccccChh------------------hhhcCCCCCEEECCCCcCCCCChHHh
Confidence 0000 0111367888888884 44433332 23334444444444444444444444
Q ss_pred CCCCCccEEEEecccccchhhhhhhhhhhccCCccEEeecCCCCcccchhhhhhHHhhhhhcccccccEEEeecCCCCCC
Q 048004 527 LRLPKLEELEIENMKEQTYIWKSHKELLQDICSLKRLTIDSCPKLQSLVAEEEKDQQQQLCELSCRLEYLTLSGCQGLVK 606 (943)
Q Consensus 527 ~~l~~L~~L~l~~~~~~~~i~~~~~~~~~~l~~L~~L~l~~~~~L~~l~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~ 606 (943)
..+++|+.|++++|..... .+..+..+++|+.|+++++ .++.+....+ ...++|+.|++++|... .
T Consensus 311 ~~l~~L~~L~Ls~N~l~~~----~~~~~~~l~~L~~L~L~~N-~i~~~~~~~~--------~~l~~L~~L~Ls~N~l~-~ 376 (844)
T 3j0a_A 311 YGLDNLQVLNLSYNLLGEL----YSSNFYGLPKVAYIDLQKN-HIAIIQDQTF--------KFLEKLQTLDLRDNALT-T 376 (844)
T ss_dssp TTCSSCCEEEEESCCCSCC----CSCSCSSCTTCCEEECCSC-CCCCCCSSCS--------CSCCCCCEEEEETCCSC-C
T ss_pred cCCCCCCEEECCCCCCCcc----CHHHhcCCCCCCEEECCCC-CCCccChhhh--------cCCCCCCEEECCCCCCC-c
Confidence 4445555555544433211 1122333444444444443 2222211110 01145566666655432 2
Q ss_pred CCccccCccccceEEeccCCCccccCCccCCCCccEEEeccCCCCcccccccccCCCCCCCeEEEeecCCCccccCcc--
Q 048004 607 LPQSSLSLNSLREIEIYKCSSLVSFPEVALPSKLKKIEIRECDALKSLPEAWMCGTNSSLEILSIQGCHSLTYIAGVQ-- 684 (943)
Q Consensus 607 l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~-- 684 (943)
++ .+++|+.|++++|. +..+|.. ..+++.|++++|. ++.++...+...+++|+.|++++|.... ++...
T Consensus 377 i~----~~~~L~~L~l~~N~-l~~l~~~--~~~l~~L~ls~N~-l~~l~~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~ 447 (844)
T 3j0a_A 377 IH----FIPSIPDIFLSGNK-LVTLPKI--NLTANLIHLSENR-LENLDILYFLLRVPHLQILILNQNRFSS-CSGDQTP 447 (844)
T ss_dssp CS----SCCSCSEEEEESCC-CCCCCCC--CTTCCEEECCSCC-CCSSTTHHHHTTCTTCCEEEEESCCCCC-CCSSSSS
T ss_pred cc----CCCCcchhccCCCC-ccccccc--ccccceeecccCc-cccCchhhhhhcCCccceeeCCCCcccc-ccccccc
Confidence 22 25566666666663 3344432 4456666666643 3333332222466677777777765321 11110
Q ss_pred -CCCCccEEEeccCCCccccccccccccCCCCCCCeeeeeccCCcccccccCCCCCCcCeEeecCCCCceecCCCCCCCC
Q 048004 685 -LPPSLKRLEIDFCDNLRTLTVEEGIQSSSSSSSSSRSIWTCENLKFLPSGLHNLRQLQEIEIWECENLVSFPQGGLPCA 763 (943)
Q Consensus 685 -~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~~~L~~l~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~ 763 (943)
..++|+.|++++ |...... .-...+..+.++++|++|++++|...+..|..+..++
T Consensus 448 ~~~~~L~~L~Ls~-----------N~l~~~~------------~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 504 (844)
T 3j0a_A 448 SENPSLEQLFLGE-----------NMLQLAW------------ETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLT 504 (844)
T ss_dssp CSCTTCCBCEEES-----------CCCSSSC------------CSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCC
T ss_pred ccCCccccccCCC-----------Ccccccc------------ccccchhhhcCcccccEEECCCCcccccChhHccchh
Confidence 011122222221 1110000 0011234455566666666666655554455555666
Q ss_pred CcceEeecccCCCCccccccCCCCccceEEecCCCchhhhhhhhccccCCCCCcCEEEEeec
Q 048004 764 KLSMLTVYGCERLKALPKGLHNLTNLHSLEIHGNTKIWKSMIEWGRGFHRFSSLRELKISRC 825 (943)
Q Consensus 764 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~ls~n 825 (943)
+|++|++++|.+.+..+..+. ++|+.|++++|...... -..+++|+.|++++|
T Consensus 505 ~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~-------~~~~~~L~~l~l~~N 557 (844)
T 3j0a_A 505 ALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPN-------PDVFVSLSVLDITHN 557 (844)
T ss_dssp SCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCC-------SCCCSSCCEEEEEEE
T ss_pred hhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCC-------hhHhCCcCEEEecCC
Confidence 666666666655444333333 56666666666533211 122345666666665
No 12
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=1.5e-33 Score=327.85 Aligned_cols=106 Identities=24% Similarity=0.207 Sum_probs=82.3
Q ss_pred CccccccCCCcccEEEecCcccccc-CccccCCCcccEEecCCCCCcccc-hhHhhcccCcEEecCCCcchhhchHhhcc
Q 048004 168 SILPKLLKPQRLRAFSLRGYYIFEL-PDSVGDLRYLRYLNLCGTKIRTLP-ESVNKLYNLHSLLLEDCDRLKKLCADMGN 245 (943)
Q Consensus 168 ~~~~~~~~l~~L~~L~L~~~~i~~l-p~~~~~L~~L~~L~L~~n~i~~lp-~~i~~L~~L~~L~L~~~~~l~~lp~~~~~ 245 (943)
.+|..++ ++|++|++++|.++.+ |..|.++++|++|+|++|.++.+| .+++++++|++|++++|......|..|++
T Consensus 19 ~ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 96 (549)
T 2z81_A 19 SIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGP 96 (549)
T ss_dssp SCCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTT
T ss_pred cccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhcc
Confidence 3444443 6899999999998887 567899999999999999999776 67899999999999996544444555999
Q ss_pred cccccccccCCCCcccc--CCcccCCccccccc
Q 048004 246 LAKLHHLKNSNTKSLEE--MPVGIGKLTSLQTL 276 (943)
Q Consensus 246 L~~L~~L~l~~~~~~~~--~p~~i~~L~~L~~L 276 (943)
+++|++|++++|. +.. +|..++++++|++|
T Consensus 97 l~~L~~L~Ls~n~-l~~~~~~~~~~~l~~L~~L 128 (549)
T 2z81_A 97 LSSLKYLNLMGNP-YQTLGVTSLFPNLTNLQTL 128 (549)
T ss_dssp CTTCCEEECTTCC-CSSSCSSCSCTTCTTCCEE
T ss_pred CCCCcEEECCCCc-ccccchhhhhhccCCccEE
Confidence 9999999999998 553 34456666555555
No 13
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=1.6e-33 Score=327.54 Aligned_cols=95 Identities=22% Similarity=0.257 Sum_probs=80.0
Q ss_pred ccEEEecCccccccCccccCCCcccEEecCCCCCccc-chhHhhcccCcEEecCCCcchhhchHhhcccccccccccCCC
Q 048004 179 LRAFSLRGYYIFELPDSVGDLRYLRYLNLCGTKIRTL-PESVNKLYNLHSLLLEDCDRLKKLCADMGNLAKLHHLKNSNT 257 (943)
Q Consensus 179 L~~L~L~~~~i~~lp~~~~~L~~L~~L~L~~n~i~~l-p~~i~~L~~L~~L~L~~~~~l~~lp~~~~~L~~L~~L~l~~~ 257 (943)
..+-+.+++.++.+|..+. ++|++|+|++|.++.+ |.+++++++|++|++++|......|..|+++++|++|++++|
T Consensus 7 ~~~c~~~~~~l~~ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n 84 (549)
T 2z81_A 7 SGVCDGRSRSFTSIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDN 84 (549)
T ss_dssp TSEEECTTSCCSSCCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTS
T ss_pred CceEECCCCccccccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCC
Confidence 3456888899999998775 7999999999999977 478999999999999997555545678999999999999999
Q ss_pred CccccCCcc-cCCccccccc
Q 048004 258 KSLEEMPVG-IGKLTSLQTL 276 (943)
Q Consensus 258 ~~~~~~p~~-i~~L~~L~~L 276 (943)
. +..+|.. ++.+++|++|
T Consensus 85 ~-l~~~~~~~~~~l~~L~~L 103 (549)
T 2z81_A 85 H-LSSLSSSWFGPLSSLKYL 103 (549)
T ss_dssp C-CCSCCHHHHTTCTTCCEE
T ss_pred c-cCccCHHHhccCCCCcEE
Confidence 8 6666665 8888888877
No 14
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=3.6e-33 Score=321.83 Aligned_cols=219 Identities=14% Similarity=0.116 Sum_probs=138.4
Q ss_pred ccccEEEeecCCCCCCCCccc-----cCccccceEEeccCCCccccCC--ccC---CCCccEEEeccCCCCccccccccc
Q 048004 591 CRLEYLTLSGCQGLVKLPQSS-----LSLNSLREIEIYKCSSLVSFPE--VAL---PSKLKKIEIRECDALKSLPEAWMC 660 (943)
Q Consensus 591 ~~L~~L~l~~~~~l~~l~~~~-----~~l~~L~~L~l~~~~~l~~~~~--~~~---~~~L~~L~l~~~~~l~~~~~~~~~ 660 (943)
++|++|++++|...+.+|..+ ..+++|+.+++++|.. .+|. ... -++|+.|++++|.... ++. .
T Consensus 247 ~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~-~~~---~ 320 (520)
T 2z7x_B 247 TTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVH-MLC---P 320 (520)
T ss_dssp SSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCC-CCC---C
T ss_pred CcccEEEeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCcccc-ccc---h
Confidence 478888888887766777777 7888888888888755 4552 111 1568889998876432 221 1
Q ss_pred CCCCCCCeEEEeecCCCccccCccCCCCccEEEeccCCCccccccccccccCCCCCCCeeeeeccCCcccccccCCCCCC
Q 048004 661 GTNSSLEILSIQGCHSLTYIAGVQLPPSLKRLEIDFCDNLRTLTVEEGIQSSSSSSSSSRSIWTCENLKFLPSGLHNLRQ 740 (943)
Q Consensus 661 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~~~L~~l~l~~~~~l~~lp~~~~~l~~ 740 (943)
..+++|++|++++|...+.+ |..+.++++
T Consensus 321 ~~l~~L~~L~Ls~n~l~~~~---------------------------------------------------~~~~~~l~~ 349 (520)
T 2z7x_B 321 SKISPFLHLDFSNNLLTDTV---------------------------------------------------FENCGHLTE 349 (520)
T ss_dssp SSCCCCCEEECCSSCCCTTT---------------------------------------------------TTTCCCCSS
T ss_pred hhCCcccEEEeECCccChhh---------------------------------------------------hhhhccCCC
Confidence 46788999999888743211 234455666
Q ss_pred cCeEeecCCCCce--ecCCCCCCCCCcceEeecccCCCCccccc-cCCCCccceEEecCCCchhhhhhhhccccCCCCCc
Q 048004 741 LQEIEIWECENLV--SFPQGGLPCAKLSMLTVYGCERLKALPKG-LHNLTNLHSLEIHGNTKIWKSMIEWGRGFHRFSSL 817 (943)
Q Consensus 741 L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~~~~~~~~~~~-l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L 817 (943)
|++|++++|...+ .+|..+..+++|++|++++|.+.+.+|.. +..+++|++|++++|........ .+. ++|
T Consensus 350 L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~----~l~--~~L 423 (520)
T 2z7x_B 350 LETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFR----CLP--PRI 423 (520)
T ss_dssp CCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGG----SCC--TTC
T ss_pred CCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhh----hhc--ccC
Confidence 6677776665543 44444556667777777776665545443 56666777777777654321111 111 567
Q ss_pred CEEEEeecCCCceecCCCccccCCCCCCCCccceeeccCCCCCcccccc-cccCCCCCeEEEcCCC
Q 048004 818 RELKISRCDDDMVSFPPEDIRLGTTLPLPASLTSLEIGYFPNLERLSSS-IVDLQNLTSLFLYHCP 882 (943)
Q Consensus 818 ~~L~ls~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~-~~~l~~L~~L~l~~c~ 882 (943)
++|++++| .+..+|... ..+++|++|++++| .++.+|.. +..+++|+.|++++|+
T Consensus 424 ~~L~Ls~N--~l~~ip~~~-------~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~l~~N~ 479 (520)
T 2z7x_B 424 KVLDLHSN--KIKSIPKQV-------VKLEALQELNVASN-QLKSVPDGIFDRLTSLQKIWLHTNP 479 (520)
T ss_dssp CEEECCSS--CCCCCCGGG-------GGCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEECCCC--cccccchhh-------hcCCCCCEEECCCC-cCCccCHHHhccCCcccEEECcCCC
Confidence 77777776 445666544 35677777777775 45667665 6677777777777765
No 15
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=6.5e-33 Score=324.31 Aligned_cols=98 Identities=22% Similarity=0.252 Sum_probs=55.7
Q ss_pred cccEEEecCccccccC-ccccCCCcccEEecCCCCCcccc-hhHhhcccCcEEecCCCcchhhchHhhcccccccccccC
Q 048004 178 RLRAFSLRGYYIFELP-DSVGDLRYLRYLNLCGTKIRTLP-ESVNKLYNLHSLLLEDCDRLKKLCADMGNLAKLHHLKNS 255 (943)
Q Consensus 178 ~L~~L~L~~~~i~~lp-~~~~~L~~L~~L~L~~n~i~~lp-~~i~~L~~L~~L~L~~~~~l~~lp~~~~~L~~L~~L~l~ 255 (943)
.+++|++++|.++.++ .+|.++++|++|+|++|.++.+| ..|+++++|++|++++|......|..|+++++|++|+++
T Consensus 29 ~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 108 (570)
T 2z63_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 108 (570)
T ss_dssp SCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred cccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCcccccccccc
Confidence 4566666666665553 34566666666666666666554 345666666666666643222223456666666666666
Q ss_pred CCCccccCCc-ccCCccccccc
Q 048004 256 NTKSLEEMPV-GIGKLTSLQTL 276 (943)
Q Consensus 256 ~~~~~~~~p~-~i~~L~~L~~L 276 (943)
+|. +..+|. .++++++|++|
T Consensus 109 ~n~-l~~l~~~~~~~l~~L~~L 129 (570)
T 2z63_A 109 ETN-LASLENFPIGHLKTLKEL 129 (570)
T ss_dssp TSC-CCCSTTCSCTTCTTCCEE
T ss_pred ccc-cccCCCccccccccccEE
Confidence 665 555544 35566666655
No 16
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=2.7e-32 Score=324.11 Aligned_cols=210 Identities=17% Similarity=0.131 Sum_probs=160.5
Q ss_pred CCCCeeeeeccCCcccccccCCCCCCcCeEeecCCCCceecCC-CCCCCCCcceEeecccCCCCccccccCCCCccceEE
Q 048004 715 SSSSSRSIWTCENLKFLPSGLHNLRQLQEIEIWECENLVSFPQ-GGLPCAKLSMLTVYGCERLKALPKGLHNLTNLHSLE 793 (943)
Q Consensus 715 ~~L~~l~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ 793 (943)
.+++.+++..+. ...++..+..+++|+.+++.+|......+. .+..+++++.+++++|...+..+..+..+++|+.|+
T Consensus 397 ~~L~~L~~~~~~-~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~ 475 (635)
T 4g8a_A 397 ISLKYLDLSFNG-VITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLK 475 (635)
T ss_dssp SCCCEEECCSCS-EEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEE
T ss_pred hhhhhhhccccc-cccccccccccccccchhhhhccccccccccccccccccccccccccccccccccccccchhhhhhh
Confidence 445555555443 233456778899999999998876665553 466789999999999999888888899999999999
Q ss_pred ecCCCchhhhhhhhccccCCCCCcCEEEEeecCCCceecCCCccccCCCCCCCCccceeeccCCCCCcccc-cccccCCC
Q 048004 794 IHGNTKIWKSMIEWGRGFHRFSSLRELKISRCDDDMVSFPPEDIRLGTTLPLPASLTSLEIGYFPNLERLS-SSIVDLQN 872 (943)
Q Consensus 794 l~~n~~~~~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~-~~~~~l~~ 872 (943)
+++|....... +..+..+++|++|+|++| .+..++++.| ..+++|++|+|++| .++.++ ..+.++++
T Consensus 476 Ls~N~~~~~~~---~~~~~~l~~L~~L~Ls~N--~L~~l~~~~f------~~l~~L~~L~Ls~N-~l~~l~~~~~~~l~~ 543 (635)
T 4g8a_A 476 MAGNSFQENFL---PDIFTELRNLTFLDLSQC--QLEQLSPTAF------NSLSSLQVLNMSHN-NFFSLDTFPYKCLNS 543 (635)
T ss_dssp CTTCEEGGGEE---CSCCTTCTTCCEEECTTS--CCCEECTTTT------TTCTTCCEEECTTS-CCCBCCCGGGTTCTT
T ss_pred hhhcccccccC---chhhhhccccCEEECCCC--ccCCcChHHH------cCCCCCCEEECCCC-cCCCCChhHHhCCCC
Confidence 99997554322 344889999999999997 6777766655 68999999999996 566665 45789999
Q ss_pred CCeEEEcCCCCCCCCCCCCC---CcccceeeecCCcchhhhhcCCCCCCCccccCcceEEECCeeeecccccC
Q 048004 873 LTSLFLYHCPKLKYFPEKGL---PSSLLELIIYRCPLIAEKCGKDGGQYWDLLTHIPHVAIDGKSIFGDKYSR 942 (943)
Q Consensus 873 L~~L~l~~c~~l~~l~~~~~---~~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 942 (943)
|+.|+++++ +++.+++..+ +++|+.|++++||. .|.|+..|.+.|+...... +.+...+.|++|.
T Consensus 544 L~~L~Ls~N-~l~~~~~~~l~~l~~~L~~L~L~~Np~---~C~C~~~~~~~wl~~~~~~-~~~~~~~~C~~P~ 611 (635)
T 4g8a_A 544 LQVLDYSLN-HIMTSKKQELQHFPSSLAFLNLTQNDF---ACTCEHQSFLQWIKDQRQL-LVEVERMECATPS 611 (635)
T ss_dssp CCEEECTTS-CCCBCCSSCTTCCCTTCCEEECTTCCB---CCSGGGHHHHHHHHHTTTT-BSCGGGCBBCSST
T ss_pred CCEEECCCC-cCCCCCHHHHHhhhCcCCEEEeeCCCC---cccCCcHHHHHHHHhCCCc-cCCCCCceeCCch
Confidence 999999995 6777766543 57999999999999 7999888877777544332 2333456677764
No 17
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=1.8e-33 Score=329.90 Aligned_cols=341 Identities=17% Similarity=0.128 Sum_probs=200.4
Q ss_pred CCcCcCCCCCCCccEEEEecCCCCCCCC-CCCCCCCCCeeEEccccCee--EeCccccCCCCCccceeeccccccccccc
Q 048004 375 FPTWLGDSLFSNLVTLEFEDCGMCTALP-SVGQLPSLKHLTVRGMSRVK--RLGSEFCGNDPPCLETLRFENMREWEDWI 451 (943)
Q Consensus 375 ~p~~~~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~l~~~~~~~--~~~~~~~~~~~~~L~~L~l~~~~~l~~~~ 451 (943)
+|..++-..+++|++|++++|.+.+.+| .++++++|++|++++|..++ .++..+.. | .
T Consensus 239 ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~-----L-----------~--- 299 (636)
T 4eco_A 239 KTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQA-----L-----------A--- 299 (636)
T ss_dssp TTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHH-----H-----------H---
T ss_pred CchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHh-----h-----------h---
Confidence 6777661128999999999999888888 78999999999999986232 23322110 0 0
Q ss_pred ccCCcccccCCCcccEEecccCcccccCCCCCCCccceEEeccccCccccCCCCCcccEEEEcCCcCeeeeccccCCCCC
Q 048004 452 PHGSGQRVEGFPKLRELHILRCSKLKGTFPEHLPALEMLVIEGCEELLVSVSSLPALCKLHIGGCKKVVWRRPLKLRLPK 531 (943)
Q Consensus 452 ~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~~l~~L~~L~l~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~ 531 (943)
....+++|++|++++| +++ .+|.. ..+..+++|++|++++|.+.+..+ .+..+++
T Consensus 300 ------~~~~l~~L~~L~L~~n-~l~-~ip~~----------------~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~ 354 (636)
T 4eco_A 300 ------DAPVGEKIQIIYIGYN-NLK-TFPVE----------------TSLQKMKKLGMLECLYNQLEGKLP-AFGSEIK 354 (636)
T ss_dssp ------HSGGGGTCCEEECCSS-CCS-SCCCH----------------HHHTTCTTCCEEECCSCCCEEECC-CCEEEEE
T ss_pred ------ccccCCCCCEEECCCC-cCC-ccCch----------------hhhccCCCCCEEeCcCCcCccchh-hhCCCCC
Confidence 0123578888888884 565 56530 035567777888888887774444 5556666
Q ss_pred ccEEEEecccccchhhhhhhhhhhccCCccEEeecCCCCcccchhhhhhHHhhhhhccccc-ccEEEeecCCCCCCCCcc
Q 048004 532 LEELEIENMKEQTYIWKSHKELLQDICSLKRLTIDSCPKLQSLVAEEEKDQQQQLCELSCR-LEYLTLSGCQGLVKLPQS 610 (943)
Q Consensus 532 L~~L~l~~~~~~~~i~~~~~~~~~~l~~L~~L~l~~~~~L~~l~~~~~~~~~~~l~~~~~~-L~~L~l~~~~~l~~l~~~ 610 (943)
|+.|++++|... .+ + ..+..+ ++ |++|++++|... .+|..
T Consensus 355 L~~L~L~~N~l~-~l---p-~~l~~l---------------------------------~~~L~~L~Ls~N~l~-~lp~~ 395 (636)
T 4eco_A 355 LASLNLAYNQIT-EI---P-ANFCGF---------------------------------TEQVENLSFAHNKLK-YIPNI 395 (636)
T ss_dssp ESEEECCSSEEE-EC---C-TTSEEE---------------------------------CTTCCEEECCSSCCS-SCCSC
T ss_pred CCEEECCCCccc-cc---c-Hhhhhh---------------------------------cccCcEEEccCCcCc-ccchh
Confidence 666666665432 11 0 001111 34 666666666544 56655
Q ss_pred ccCcc--ccceEEeccCCCccccCC-cc-------CCCCccEEEeccCCCCcccccccccCCCCCCCeEEEeecCCCccc
Q 048004 611 SLSLN--SLREIEIYKCSSLVSFPE-VA-------LPSKLKKIEIRECDALKSLPEAWMCGTNSSLEILSIQGCHSLTYI 680 (943)
Q Consensus 611 ~~~l~--~L~~L~l~~~~~l~~~~~-~~-------~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~ 680 (943)
+..++ +|++|++++|...+.+|. +. .+++|++|++++|. ++.+|..++ ..+++|++|++++|... .+
T Consensus 396 ~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~-l~~lp~~~~-~~l~~L~~L~Ls~N~l~-~i 472 (636)
T 4eco_A 396 FDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQ-ISKFPKELF-STGSPLSSINLMGNMLT-EI 472 (636)
T ss_dssp CCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSC-CCSCCTHHH-HTTCCCSEEECCSSCCS-BC
T ss_pred hhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCc-cCcCCHHHH-ccCCCCCEEECCCCCCC-Cc
Confidence 55433 677777777755544442 22 34567777777754 335665543 45677777777777632 33
Q ss_pred cCccCCCCccEEEeccCCCccccccccccccCCCCCCCeeeeeccCCcccccccCCCCCCcCeEeecCCCCceecCCCCC
Q 048004 681 AGVQLPPSLKRLEIDFCDNLRTLTVEEGIQSSSSSSSSSRSIWTCENLKFLPSGLHNLRQLQEIEIWECENLVSFPQGGL 760 (943)
Q Consensus 681 ~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~~~L~~l~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~ 760 (943)
+...+. ..+..+.++++|++|++++|... .+|..+.
T Consensus 473 ~~~~~~-------------------------------------------~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~ 508 (636)
T 4eco_A 473 PKNSLK-------------------------------------------DENENFKNTYLLTSIDLRFNKLT-KLSDDFR 508 (636)
T ss_dssp CSSSSE-------------------------------------------ETTEECTTGGGCCEEECCSSCCC-BCCGGGS
T ss_pred CHHHhc-------------------------------------------cccccccccCCccEEECcCCcCC-ccChhhh
Confidence 321100 00111334557788888777544 6776665
Q ss_pred --CCCCcceEeecccCCCCccccccCCCCccceEEecCCCchh--hhhhhhccccCCCCCcCEEEEeecCCCceecCCCc
Q 048004 761 --PCAKLSMLTVYGCERLKALPKGLHNLTNLHSLEIHGNTKIW--KSMIEWGRGFHRFSSLRELKISRCDDDMVSFPPED 836 (943)
Q Consensus 761 --~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~--~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~~~~~~ 836 (943)
.+++|++|++++|.+.+ +|..+..+++|+.|++++|+... .....++..+..+++|++|++++| .++.+|...
T Consensus 509 ~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N--~l~~ip~~~ 585 (636)
T 4eco_A 509 ATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSN--DIRKVNEKI 585 (636)
T ss_dssp TTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSS--CCCBCCSCC
T ss_pred hccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCC--cCCccCHhH
Confidence 77788888888877765 77777778888888886553110 011223334555666666666665 335555432
Q ss_pred cccCCCCCCCCccceeeccCC
Q 048004 837 IRLGTTLPLPASLTSLEIGYF 857 (943)
Q Consensus 837 ~~~~~~~~~l~~L~~L~l~~~ 857 (943)
.++|+.|++++|
T Consensus 586 ---------~~~L~~L~Ls~N 597 (636)
T 4eco_A 586 ---------TPNISVLDIKDN 597 (636)
T ss_dssp ---------CTTCCEEECCSC
T ss_pred ---------hCcCCEEECcCC
Confidence 145555555554
No 18
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=5e-33 Score=326.10 Aligned_cols=68 Identities=19% Similarity=0.323 Sum_probs=56.2
Q ss_pred CCCCcccchhHhhcccCcEEecCCCcchhh-----------------chHhhc--ccccccccccCCCCccccCCcccCC
Q 048004 209 GTKIRTLPESVNKLYNLHSLLLEDCDRLKK-----------------LCADMG--NLAKLHHLKNSNTKSLEEMPVGIGK 269 (943)
Q Consensus 209 ~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~-----------------lp~~~~--~L~~L~~L~l~~~~~~~~~p~~i~~ 269 (943)
+|+++.+|.+++++++|++|+|++|..... +|..++ ++++|++|++++|.....+|..+++
T Consensus 192 ~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~ 271 (636)
T 4eco_A 192 SNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKA 271 (636)
T ss_dssp SCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTT
T ss_pred cCCCccCCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhc
Confidence 456777888899999999999998654443 888888 9999999999998877788888888
Q ss_pred ccccccc
Q 048004 270 LTSLQTL 276 (943)
Q Consensus 270 L~~L~~L 276 (943)
+++|++|
T Consensus 272 l~~L~~L 278 (636)
T 4eco_A 272 LPEMQLI 278 (636)
T ss_dssp CSSCCEE
T ss_pred CCCCCEE
Confidence 8888888
No 19
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=1.6e-32 Score=325.75 Aligned_cols=66 Identities=18% Similarity=0.293 Sum_probs=56.3
Q ss_pred CCcccchhHhhcccCcEEecCCCcchh-----------------hchHhhc--ccccccccccCCCCccccCCcccCCcc
Q 048004 211 KIRTLPESVNKLYNLHSLLLEDCDRLK-----------------KLCADMG--NLAKLHHLKNSNTKSLEEMPVGIGKLT 271 (943)
Q Consensus 211 ~i~~lp~~i~~L~~L~~L~L~~~~~l~-----------------~lp~~~~--~L~~L~~L~l~~~~~~~~~p~~i~~L~ 271 (943)
.++.+|.+++++++|++|+|++|.... .+|..++ ++++|++|++++|.....+|..+++++
T Consensus 436 ~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~ 515 (876)
T 4ecn_A 436 RITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLP 515 (876)
T ss_dssp EEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCS
T ss_pred cccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCC
Confidence 444489999999999999999976444 2898887 999999999999987888998899999
Q ss_pred ccccc
Q 048004 272 SLQTL 276 (943)
Q Consensus 272 ~L~~L 276 (943)
+|++|
T Consensus 516 ~L~~L 520 (876)
T 4ecn_A 516 ELQSL 520 (876)
T ss_dssp SCCEE
T ss_pred CCCEE
Confidence 99888
No 20
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.98 E-value=1.9e-31 Score=316.56 Aligned_cols=342 Identities=18% Similarity=0.147 Sum_probs=200.8
Q ss_pred CCcCcCCCCCCCccEEEEecCCCCCCCC-CCCCCCCCCeeEEccccCee--EeCccccCCCCCccceeeccccccccccc
Q 048004 375 FPTWLGDSLFSNLVTLEFEDCGMCTALP-SVGQLPSLKHLTVRGMSRVK--RLGSEFCGNDPPCLETLRFENMREWEDWI 451 (943)
Q Consensus 375 ~p~~~~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~l~~~~~~~--~~~~~~~~~~~~~L~~L~l~~~~~l~~~~ 451 (943)
+|..++-..+++|+.|+|++|.+.+.+| .++.+++|+.|++++|..+. .++..+.. +. +
T Consensus 481 iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~----------------L~-~- 542 (876)
T 4ecn_A 481 ENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTR----------------LA-D- 542 (876)
T ss_dssp TTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHH----------------HH-H-
T ss_pred CChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHh----------------hh-h-
Confidence 6776651127899999999999888888 78889999999999885232 23322110 00 0
Q ss_pred ccCCcccccCCCcccEEecccCcccccCCCCCCCccceEEeccccCccccCCCCCcccEEEEcCCcCeeeeccccCCCCC
Q 048004 452 PHGSGQRVEGFPKLRELHILRCSKLKGTFPEHLPALEMLVIEGCEELLVSVSSLPALCKLHIGGCKKVVWRRPLKLRLPK 531 (943)
Q Consensus 452 ~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~~l~~L~~L~l~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~ 531 (943)
....+++|+.|++++| .++ .+|. ...+..+++|+.|++++|.+..+ + .+..+++
T Consensus 543 ------~~~~l~~L~~L~Ls~N-~L~-~ip~----------------~~~l~~L~~L~~L~Ls~N~l~~l-p-~~~~L~~ 596 (876)
T 4ecn_A 543 ------DEDTGPKIQIFYMGYN-NLE-EFPA----------------SASLQKMVKLGLLDCVHNKVRHL-E-AFGTNVK 596 (876)
T ss_dssp ------CTTTTTTCCEEECCSS-CCC-BCCC----------------HHHHTTCTTCCEEECTTSCCCBC-C-CCCTTSE
T ss_pred ------cccccCCccEEEeeCC-cCC-ccCC----------------hhhhhcCCCCCEEECCCCCcccc-h-hhcCCCc
Confidence 0344678888888884 555 5553 00345567777777777776632 2 5556666
Q ss_pred ccEEEEecccccchhhhhhhhhhhccCCccEEeecCCCCcccchhhhhhHHhhhhhccccc-ccEEEeecCCCCCCCCcc
Q 048004 532 LEELEIENMKEQTYIWKSHKELLQDICSLKRLTIDSCPKLQSLVAEEEKDQQQQLCELSCR-LEYLTLSGCQGLVKLPQS 610 (943)
Q Consensus 532 L~~L~l~~~~~~~~i~~~~~~~~~~l~~L~~L~l~~~~~L~~l~~~~~~~~~~~l~~~~~~-L~~L~l~~~~~l~~l~~~ 610 (943)
|+.|++++|... .++ ..+..+ ++ |+.|++++|... .+|..
T Consensus 597 L~~L~Ls~N~l~-~lp----~~l~~l---------------------------------~~~L~~L~Ls~N~L~-~lp~~ 637 (876)
T 4ecn_A 597 LTDLKLDYNQIE-EIP----EDFCAF---------------------------------TDQVEGLGFSHNKLK-YIPNI 637 (876)
T ss_dssp ESEEECCSSCCS-CCC----TTSCEE---------------------------------CTTCCEEECCSSCCC-SCCSC
T ss_pred ceEEECcCCccc-cch----HHHhhc---------------------------------cccCCEEECcCCCCC-cCchh
Confidence 666666665432 110 001111 34 666666666543 56665
Q ss_pred ccCccc--cceEEeccCCCccccCCcc------CCCCccEEEeccCCCCcccccccccCCCCCCCeEEEeecCCCccccC
Q 048004 611 SLSLNS--LREIEIYKCSSLVSFPEVA------LPSKLKKIEIRECDALKSLPEAWMCGTNSSLEILSIQGCHSLTYIAG 682 (943)
Q Consensus 611 ~~~l~~--L~~L~l~~~~~l~~~~~~~------~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~ 682 (943)
+..++. |+.|++++|...+.+|.+. ..++|+.|++++|. +..+|..++ ..+++|+.|++++|.. +.+|.
T Consensus 638 ~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~-L~~lp~~~~-~~l~~L~~L~Ls~N~L-~~ip~ 714 (876)
T 4ecn_A 638 FNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNE-IQKFPTELF-ATGSPISTIILSNNLM-TSIPE 714 (876)
T ss_dssp CCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSC-CCSCCHHHH-HTTCCCSEEECCSCCC-SCCCT
T ss_pred hhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCc-CCccCHHHH-ccCCCCCEEECCCCcC-CccCh
Confidence 555443 7777777776555444322 23467777777754 346665543 4667777777777752 23332
Q ss_pred ccCCCCccEEEeccCCCccccccccccccCCCCCCCeeeeeccCCcccccccCCCCCCcCeEeecCCCCceecCCCCC--
Q 048004 683 VQLPPSLKRLEIDFCDNLRTLTVEEGIQSSSSSSSSSRSIWTCENLKFLPSGLHNLRQLQEIEIWECENLVSFPQGGL-- 760 (943)
Q Consensus 683 ~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~~~L~~l~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~-- 760 (943)
..+.. .+..+.++++|+.|++++|... .+|..+.
T Consensus 715 ~~~~~-------------------------------------------~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~ 750 (876)
T 4ecn_A 715 NSLKP-------------------------------------------KDGNYKNTYLLTTIDLRFNKLT-SLSDDFRAT 750 (876)
T ss_dssp TSSSC-------------------------------------------TTSCCTTGGGCCEEECCSSCCC-CCCGGGSTT
T ss_pred HHhcc-------------------------------------------ccccccccCCccEEECCCCCCc-cchHHhhhc
Confidence 10000 0112334567888888887544 6776665
Q ss_pred CCCCcceEeecccCCCCccccccCCCCccceEEecCCCchh--hhhhhhccccCCCCCcCEEEEeecCCCceecCCCccc
Q 048004 761 PCAKLSMLTVYGCERLKALPKGLHNLTNLHSLEIHGNTKIW--KSMIEWGRGFHRFSSLRELKISRCDDDMVSFPPEDIR 838 (943)
Q Consensus 761 ~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~--~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~~~~~~~~ 838 (943)
.+++|+.|++++|.+.+ +|..+..+++|+.|+|++|+.+. .....++..+..+++|++|+|++| .++.+|...
T Consensus 751 ~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N--~L~~Ip~~l-- 825 (876)
T 4ecn_A 751 TLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSN--DIRKVDEKL-- 825 (876)
T ss_dssp TCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSS--CCCBCCSCC--
T ss_pred cCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCC--CCCccCHhh--
Confidence 77888888888877765 67777788888888887754111 011223334566666666666665 335555432
Q ss_pred cCCCCCCCCccceeeccCCC
Q 048004 839 LGTTLPLPASLTSLEIGYFP 858 (943)
Q Consensus 839 ~~~~~~~l~~L~~L~l~~~~ 858 (943)
.++|+.|+|++|+
T Consensus 826 -------~~~L~~LdLs~N~ 838 (876)
T 4ecn_A 826 -------TPQLYILDIADNP 838 (876)
T ss_dssp -------CSSSCEEECCSCT
T ss_pred -------cCCCCEEECCCCC
Confidence 1456666666654
No 21
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.97 E-value=6.8e-31 Score=312.06 Aligned_cols=100 Identities=23% Similarity=0.277 Sum_probs=86.2
Q ss_pred CcccEEEecCccccccC-ccccCCCcccEEecCCCCCcccch-hHhhcccCcEEecCCCcchhhchH-hhcccccccccc
Q 048004 177 QRLRAFSLRGYYIFELP-DSVGDLRYLRYLNLCGTKIRTLPE-SVNKLYNLHSLLLEDCDRLKKLCA-DMGNLAKLHHLK 253 (943)
Q Consensus 177 ~~L~~L~L~~~~i~~lp-~~~~~L~~L~~L~L~~n~i~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~-~~~~L~~L~~L~ 253 (943)
..+++|||++|.|+.+| .+|.++++|++|+|++|+|+.+|+ +|++|++|++|+|++| .+..+|. .|+++++|++|+
T Consensus 52 ~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N-~l~~l~~~~f~~L~~L~~L~ 130 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN-PIQSLALGAFSGLSSLQKLV 130 (635)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC-CCCEECGGGGTTCTTCCEEE
T ss_pred cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCC-cCCCCCHHHhcCCCCCCEEE
Confidence 46899999999999997 579999999999999999999874 6899999999999995 5666764 589999999999
Q ss_pred cCCCCccccCCcc-cCCccccccccc
Q 048004 254 NSNTKSLEEMPVG-IGKLTSLQTLCN 278 (943)
Q Consensus 254 l~~~~~~~~~p~~-i~~L~~L~~L~~ 278 (943)
+++|. +..+|.. |+++++|++|+.
T Consensus 131 Ls~N~-l~~l~~~~~~~L~~L~~L~L 155 (635)
T 4g8a_A 131 AVETN-LASLENFPIGHLKTLKELNV 155 (635)
T ss_dssp CTTSC-CCCSTTCCCTTCTTCCEEEC
T ss_pred CCCCc-CCCCChhhhhcCcccCeecc
Confidence 99998 7888765 899999999843
No 22
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.97 E-value=3.9e-31 Score=304.81 Aligned_cols=92 Identities=16% Similarity=0.114 Sum_probs=48.7
Q ss_pred cEEEecCccccccCccccCCCcccEEecCCCCCcccc-hhHhhcccCcEEecCCCcchhhchHhhcccccccccccCCCC
Q 048004 180 RAFSLRGYYIFELPDSVGDLRYLRYLNLCGTKIRTLP-ESVNKLYNLHSLLLEDCDRLKKLCADMGNLAKLHHLKNSNTK 258 (943)
Q Consensus 180 ~~L~L~~~~i~~lp~~~~~L~~L~~L~L~~n~i~~lp-~~i~~L~~L~~L~L~~~~~l~~lp~~~~~L~~L~~L~l~~~~ 258 (943)
++|++++|.++.+|..+. ++|++|+|++|.++.+| ..++++++|++|++++|......|..|+++++|++|++++|.
T Consensus 3 ~~l~ls~n~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~ 80 (520)
T 2z7x_B 3 FLVDRSKNGLIHVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNK 80 (520)
T ss_dssp CEEECTTSCCSSCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSC
T ss_pred ceEecCCCCccccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCc
Confidence 345555555555555444 55555555555555444 345555555555555543333334455555555555555555
Q ss_pred ccccCCcccCCccccccc
Q 048004 259 SLEEMPVGIGKLTSLQTL 276 (943)
Q Consensus 259 ~~~~~p~~i~~L~~L~~L 276 (943)
++.+|.. .+++|++|
T Consensus 81 -l~~lp~~--~l~~L~~L 95 (520)
T 2z7x_B 81 -LVKISCH--PTVNLKHL 95 (520)
T ss_dssp -CCEEECC--CCCCCSEE
T ss_pred -eeecCcc--ccCCccEE
Confidence 4455544 45555555
No 23
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.97 E-value=4.1e-30 Score=298.57 Aligned_cols=61 Identities=20% Similarity=0.307 Sum_probs=43.5
Q ss_pred CCcCeEeecCCCCceecCCCCCCCCCcceEeecccCCCCccccc-cCCCCccceEEecCCCchh
Q 048004 739 RQLQEIEIWECENLVSFPQGGLPCAKLSMLTVYGCERLKALPKG-LHNLTNLHSLEIHGNTKIW 801 (943)
Q Consensus 739 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~-l~~l~~L~~L~l~~n~~~~ 801 (943)
++|++|++++|. +..+|..+..+++|++|++++|.+. .+|.. +..+++|+.|++++|+...
T Consensus 450 ~~L~~L~L~~N~-l~~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c 511 (562)
T 3a79_B 450 PKVKVLDLHNNR-IMSIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDNPWDC 511 (562)
T ss_dssp TTCSEEECCSSC-CCCCCTTTTSSCCCSEEECCSSCCC-CCCTTSTTTCTTCCCEECCSCCBCC
T ss_pred CcCCEEECCCCc-CcccChhhcCCCCCCEEECCCCCCC-CCCHHHHhcCCCCCEEEecCCCcCC
Confidence 577778887773 4467776667778888888887665 45554 7777888888888877553
No 24
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.97 E-value=4.2e-29 Score=290.08 Aligned_cols=96 Identities=17% Similarity=0.129 Sum_probs=76.7
Q ss_pred CCcccEEEecCccccccCccccCCCcccEEecCCCCCcccc-hhHhhcccCcEEecCCCcchhhchHhhccccccccccc
Q 048004 176 PQRLRAFSLRGYYIFELPDSVGDLRYLRYLNLCGTKIRTLP-ESVNKLYNLHSLLLEDCDRLKKLCADMGNLAKLHHLKN 254 (943)
Q Consensus 176 l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~L~~n~i~~lp-~~i~~L~~L~~L~L~~~~~l~~lp~~~~~L~~L~~L~l 254 (943)
+...++++++++.++.+|..+. ++|++|+|++|.|+.+| .+++++++|++|++++|......|..|+++++|++|++
T Consensus 30 ~~~~~~l~ls~~~L~~ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 107 (562)
T 3a79_B 30 NELESMVDYSNRNLTHVPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDV 107 (562)
T ss_dssp ---CCEEECTTSCCCSCCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEEC
T ss_pred cCCCcEEEcCCCCCccCCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEEC
Confidence 3445899999999999998775 89999999999999887 68999999999999996544444778999999999999
Q ss_pred CCCCccccCCcccCCccccccc
Q 048004 255 SNTKSLEEMPVGIGKLTSLQTL 276 (943)
Q Consensus 255 ~~~~~~~~~p~~i~~L~~L~~L 276 (943)
++|. ++.+|.. .+++|++|
T Consensus 108 s~N~-l~~lp~~--~l~~L~~L 126 (562)
T 3a79_B 108 SHNR-LQNISCC--PMASLRHL 126 (562)
T ss_dssp TTSC-CCEECSC--CCTTCSEE
T ss_pred CCCc-CCccCcc--ccccCCEE
Confidence 9998 6666654 34444443
No 25
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.96 E-value=5e-29 Score=278.63 Aligned_cols=79 Identities=15% Similarity=0.137 Sum_probs=39.6
Q ss_pred CCCcccEEEecCccccccCccccCCCcccEEecCCCCCc-ccchhHhhcccCcEEecCCCcchhhchHhhcccccccccc
Q 048004 175 KPQRLRAFSLRGYYIFELPDSVGDLRYLRYLNLCGTKIR-TLPESVNKLYNLHSLLLEDCDRLKKLCADMGNLAKLHHLK 253 (943)
Q Consensus 175 ~l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~L~~n~i~-~lp~~i~~L~~L~~L~L~~~~~l~~lp~~~~~L~~L~~L~ 253 (943)
+.++|++|++++|.++.+|++|+++++|++|++++|.++ .+|.+++++++|+++++++|. ..++++|+
T Consensus 9 ~~~~L~~L~l~~n~l~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~-----------~~~l~~L~ 77 (454)
T 1jl5_A 9 SNTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCL-----------DRQAHELE 77 (454)
T ss_dssp -------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHH-----------HHTCSEEE
T ss_pred ccccchhhhcccCchhhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhh-----------ccCCCEEE
Confidence 457788888888888888888888888888888888876 788888888887776666552 15677788
Q ss_pred cCCCCccccCCc
Q 048004 254 NSNTKSLEEMPV 265 (943)
Q Consensus 254 l~~~~~~~~~p~ 265 (943)
+++|. ++.+|.
T Consensus 78 l~~~~-l~~lp~ 88 (454)
T 1jl5_A 78 LNNLG-LSSLPE 88 (454)
T ss_dssp CTTSC-CSCCCS
T ss_pred ecCCc-cccCCC
Confidence 87777 565554
No 26
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.96 E-value=9.5e-29 Score=276.37 Aligned_cols=132 Identities=22% Similarity=0.228 Sum_probs=47.3
Q ss_pred CCcCeEeecCCCCceecCCCCCCCCCcceEeecccCCCCccccccCCCCccceEEecCCCchhhhhhhhccccCCCCCcC
Q 048004 739 RQLQEIEIWECENLVSFPQGGLPCAKLSMLTVYGCERLKALPKGLHNLTNLHSLEIHGNTKIWKSMIEWGRGFHRFSSLR 818 (943)
Q Consensus 739 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~ 818 (943)
++|+.|++++|...+ ++.. .++|++|++++|.+.+ +|.. +++|++|++++|.... ++. .+++|+
T Consensus 297 ~~L~~L~l~~N~l~~-i~~~---~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~~-----lp~---~l~~L~ 360 (454)
T 1jl5_A 297 PNLYYLNASSNEIRS-LCDL---PPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLAE-----VPE---LPQNLK 360 (454)
T ss_dssp TTCCEEECCSSCCSE-ECCC---CTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSC-----CCC---CCTTCC
T ss_pred CcCCEEECcCCcCCc-ccCC---cCcCCEEECCCCcccc-cccc---CCcCCEEECCCCcccc-----ccc---hhhhcc
Confidence 567777777775443 3321 1367777777776543 4443 4677777777775332 221 356777
Q ss_pred EEEEeecCCCceecCCCccccCCCCCCCCccceeeccCCCCCcccccccccCCCCCeEEEcCCCCCCCCCCCCCCcccce
Q 048004 819 ELKISRCDDDMVSFPPEDIRLGTTLPLPASLTSLEIGYFPNLERLSSSIVDLQNLTSLFLYHCPKLKYFPEKGLPSSLLE 898 (943)
Q Consensus 819 ~L~ls~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~ 898 (943)
+|++++| .+..+|. .+..+..|. .+.....+|. .+++|+.|++++++ ++.+|. +|++++.
T Consensus 361 ~L~L~~N--~l~~l~~----------ip~~l~~L~--~n~~~~~i~~---~~~~L~~L~ls~N~-l~~~~~--iP~sl~~ 420 (454)
T 1jl5_A 361 QLHVEYN--PLREFPD----------IPESVEDLR--MNSHLAEVPE---LPQNLKQLHVETNP-LREFPD--IPESVED 420 (454)
T ss_dssp EEECCSS--CCSSCCC----------CCTTCCEEE--CCC----------------------------------------
T ss_pred EEECCCC--CCCcCCC----------ChHHHHhhh--hccccccccc---ccCcCCEEECCCCc-CCcccc--chhhHhh
Confidence 7777775 3333221 112233332 2334445553 35889999999864 554433 5678999
Q ss_pred eeecCCcc
Q 048004 899 LIIYRCPL 906 (943)
Q Consensus 899 L~i~~c~~ 906 (943)
|++.+|..
T Consensus 421 L~~~~~~~ 428 (454)
T 1jl5_A 421 LRMNSERV 428 (454)
T ss_dssp --------
T ss_pred eeCcCccc
Confidence 99988764
No 27
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.95 E-value=3.7e-28 Score=271.86 Aligned_cols=96 Identities=22% Similarity=0.227 Sum_probs=73.5
Q ss_pred cccCCCcccEEEecCccccccCccccCCCcccEEecCCCCCcccchhHhhcccCcEEecCCCcchhhchHhhcccccccc
Q 048004 172 KLLKPQRLRAFSLRGYYIFELPDSVGDLRYLRYLNLCGTKIRTLPESVNKLYNLHSLLLEDCDRLKKLCADMGNLAKLHH 251 (943)
Q Consensus 172 ~~~~l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~L~~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~~~~L~~L~~ 251 (943)
.+.++++|++|++++|.++.+| .++.+++|++|+|++|.++.+| ++.+++|++|++++| .+..+| ++++++|++
T Consensus 37 ~~~~l~~L~~L~Ls~n~l~~~~-~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N-~l~~~~--~~~l~~L~~ 110 (457)
T 3bz5_A 37 SEEQLATLTSLDCHNSSITDMT-GIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSN-KLTNLD--VTPLTKLTY 110 (457)
T ss_dssp EHHHHTTCCEEECCSSCCCCCT-TGGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSS-CCSCCC--CTTCTTCCE
T ss_pred ChhHcCCCCEEEccCCCcccCh-hhcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCC-CCceee--cCCCCcCCE
Confidence 3347788888999988888887 6888888999999998888886 788888888888885 455554 788888888
Q ss_pred cccCCCCccccCCcccCCccccccc
Q 048004 252 LKNSNTKSLEEMPVGIGKLTSLQTL 276 (943)
Q Consensus 252 L~l~~~~~~~~~p~~i~~L~~L~~L 276 (943)
|++++|. +..+| ++.+++|++|
T Consensus 111 L~L~~N~-l~~l~--~~~l~~L~~L 132 (457)
T 3bz5_A 111 LNCDTNK-LTKLD--VSQNPLLTYL 132 (457)
T ss_dssp EECCSSC-CSCCC--CTTCTTCCEE
T ss_pred EECCCCc-CCeec--CCCCCcCCEE
Confidence 8888887 55554 5555555544
No 28
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.95 E-value=1.2e-26 Score=262.76 Aligned_cols=36 Identities=14% Similarity=0.158 Sum_probs=28.4
Q ss_pred CCCccEEEEecCCCCCCCCC--CCCCCCCCeeEEcccc
Q 048004 384 FSNLVTLEFEDCGMCTALPS--VGQLPSLKHLTVRGMS 419 (943)
Q Consensus 384 l~~L~~L~L~~~~~~~~l~~--l~~l~~L~~L~l~~~~ 419 (943)
+++|++|++++|.+.+..|. ++.+++|++|++++|.
T Consensus 128 l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~ 165 (455)
T 3v47_A 128 LTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNK 165 (455)
T ss_dssp CTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCC
T ss_pred cccCCEEECCCCccCccCcccccCCCCcccEEeCCCCc
Confidence 57788888888888776663 7788889999888874
No 29
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.95 E-value=1.9e-26 Score=261.01 Aligned_cols=137 Identities=17% Similarity=0.129 Sum_probs=79.7
Q ss_pred CCcCeEeecCCCCceecCCCCCCCCCcceEeecccCCCCccccccCCCCccceEEecCCCchhhhhhhhccccCCCCCcC
Q 048004 739 RQLQEIEIWECENLVSFPQGGLPCAKLSMLTVYGCERLKALPKGLHNLTNLHSLEIHGNTKIWKSMIEWGRGFHRFSSLR 818 (943)
Q Consensus 739 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~ 818 (943)
++|++|++++|...+..|..+..+++|++|++++|.+.+..|..+.++++|++|++++|...... +..+..+++|+
T Consensus 275 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~----~~~~~~l~~L~ 350 (455)
T 3v47_A 275 SGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSID----SRMFENLDKLE 350 (455)
T ss_dssp SCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEEC----GGGGTTCTTCC
T ss_pred cCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcC----hhHhcCcccCC
Confidence 56666666666666666666666666666666666665555556666666666666666532211 12255666666
Q ss_pred EEEEeecCCCceecCCCccccCCCCCCCCccceeeccCCCCCcccccc-cccCCCCCeEEEcCCCCCCCCC
Q 048004 819 ELKISRCDDDMVSFPPEDIRLGTTLPLPASLTSLEIGYFPNLERLSSS-IVDLQNLTSLFLYHCPKLKYFP 888 (943)
Q Consensus 819 ~L~ls~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~-~~~l~~L~~L~l~~c~~l~~l~ 888 (943)
+|++++| .+..++.+.+ ..+++|++|++++| .++.+|.. +..+++|+.|++++|+--...|
T Consensus 351 ~L~Ls~N--~l~~~~~~~~------~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 351 VLDLSYN--HIRALGDQSF------LGLPNLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp EEECCSS--CCCEECTTTT------TTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred EEECCCC--cccccChhhc------cccccccEEECCCC-ccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence 6666665 3444433322 45666666666664 45555543 4566777777777665444443
No 30
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.94 E-value=4.2e-26 Score=255.13 Aligned_cols=77 Identities=23% Similarity=0.286 Sum_probs=58.3
Q ss_pred CccccCCCcccEEecCCCCCcccchhHhhcccCcEEecCCCcchhhchHhhcccccccccccCCCCccccCCcccCCccc
Q 048004 193 PDSVGDLRYLRYLNLCGTKIRTLPESVNKLYNLHSLLLEDCDRLKKLCADMGNLAKLHHLKNSNTKSLEEMPVGIGKLTS 272 (943)
Q Consensus 193 p~~~~~L~~L~~L~L~~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~~~~L~~L~~L~l~~~~~~~~~p~~i~~L~~ 272 (943)
+.+++++++|++|++++|.++.+| +++.+++|++|++++| .+..+| ++.+++|++|++++|. +..+| ++.+++
T Consensus 35 ~~~~~~l~~L~~L~Ls~n~l~~~~-~l~~l~~L~~L~Ls~n-~l~~~~--~~~l~~L~~L~Ls~N~-l~~~~--~~~l~~ 107 (457)
T 3bz5_A 35 TISEEQLATLTSLDCHNSSITDMT-GIEKLTGLTKLICTSN-NITTLD--LSQNTNLTYLACDSNK-LTNLD--VTPLTK 107 (457)
T ss_dssp EEEHHHHTTCCEEECCSSCCCCCT-TGGGCTTCSEEECCSS-CCSCCC--CTTCTTCSEEECCSSC-CSCCC--CTTCTT
T ss_pred ccChhHcCCCCEEEccCCCcccCh-hhcccCCCCEEEccCC-cCCeEc--cccCCCCCEEECcCCC-Cceee--cCCCCc
Confidence 346778889999999999998887 6888999999999985 456665 8888889999988887 55543 444444
Q ss_pred cccc
Q 048004 273 LQTL 276 (943)
Q Consensus 273 L~~L 276 (943)
|++|
T Consensus 108 L~~L 111 (457)
T 3bz5_A 108 LTYL 111 (457)
T ss_dssp CCEE
T ss_pred CCEE
Confidence 4444
No 31
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.94 E-value=1e-25 Score=254.86 Aligned_cols=78 Identities=17% Similarity=0.138 Sum_probs=52.0
Q ss_pred ccccEEEeecCCCCCCCCccccCccccceEEeccCCCccccCCccCCCCccEEEeccCCCCcccccccccCCCCCCCeEE
Q 048004 591 CRLEYLTLSGCQGLVKLPQSSLSLNSLREIEIYKCSSLVSFPEVALPSKLKKIEIRECDALKSLPEAWMCGTNSSLEILS 670 (943)
Q Consensus 591 ~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~ 670 (943)
++|+.|++++|...+..| +..+++|++|++++| .+..++.+..+++|+.|++++|...+..| + ..+++|+.|+
T Consensus 309 ~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n-~l~~~~~l~~l~~L~~L~l~~n~l~~~~~--~--~~l~~L~~L~ 381 (466)
T 1o6v_A 309 KNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNN-KVSDVSSLANLTNINWLSAGHNQISDLTP--L--ANLTRITQLG 381 (466)
T ss_dssp TTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSS-CCCCCGGGTTCTTCCEEECCSSCCCBCGG--G--TTCTTCCEEE
T ss_pred CCCCEEECcCCcCCCchh--hccCccCCEeECCCC-ccCCchhhccCCCCCEEeCCCCccCccch--h--hcCCCCCEEe
Confidence 466666666665444333 567777888888777 44555666667778888887766544444 2 6778888888
Q ss_pred EeecC
Q 048004 671 IQGCH 675 (943)
Q Consensus 671 l~~~~ 675 (943)
+++|+
T Consensus 382 l~~n~ 386 (466)
T 1o6v_A 382 LNDQA 386 (466)
T ss_dssp CCCEE
T ss_pred ccCCc
Confidence 88876
No 32
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.93 E-value=3.4e-25 Score=250.58 Aligned_cols=85 Identities=15% Similarity=0.297 Sum_probs=72.0
Q ss_pred CCCcccEEEecCccccccCccccCCCcccEEecCCCCCcccchhHhhcccCcEEecCCCcchhhchHhhccccccccccc
Q 048004 175 KPQRLRAFSLRGYYIFELPDSVGDLRYLRYLNLCGTKIRTLPESVNKLYNLHSLLLEDCDRLKKLCADMGNLAKLHHLKN 254 (943)
Q Consensus 175 ~l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~L~~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~~~~L~~L~~L~l 254 (943)
.+++++.|+++++.+..+|. +..+++|++|+|++|.++.+|. ++++++|++|++++| .+..+|. ++++++|++|++
T Consensus 44 ~l~~l~~L~l~~~~i~~l~~-~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n-~l~~~~~-~~~l~~L~~L~L 119 (466)
T 1o6v_A 44 DLDQVTTLQADRLGIKSIDG-VEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNN-QIADITP-LANLTNLTGLTL 119 (466)
T ss_dssp HHHTCCEEECCSSCCCCCTT-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEEC
T ss_pred HhccccEEecCCCCCccCcc-hhhhcCCCEEECCCCccCCchh-hhccccCCEEECCCC-ccccChh-hcCCCCCCEEEC
Confidence 46789999999999988874 8889999999999999998887 899999999999985 5556665 899999999999
Q ss_pred CCCCccccCC
Q 048004 255 SNTKSLEEMP 264 (943)
Q Consensus 255 ~~~~~~~~~p 264 (943)
++|. +..+|
T Consensus 120 ~~n~-l~~~~ 128 (466)
T 1o6v_A 120 FNNQ-ITDID 128 (466)
T ss_dssp CSSC-CCCCG
T ss_pred CCCC-CCCCh
Confidence 9887 55544
No 33
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.92 E-value=1.8e-23 Score=237.89 Aligned_cols=323 Identities=21% Similarity=0.191 Sum_probs=187.6
Q ss_pred EEEeccCCCCCCcCcCCCCCCCccEEEEecCCCCCCCC-CCCCCCCCCeeEEccccCeeEeCccccCCCCCccceeeccc
Q 048004 365 FCIKGYGGMKFPTWLGDSLFSNLVTLEFEDCGMCTALP-SVGQLPSLKHLTVRGMSRVKRLGSEFCGNDPPCLETLRFEN 443 (943)
Q Consensus 365 L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 443 (943)
+...+...+.+|..+ .++++.|++++|.+....+ .+..+++|++|++++|......+..
T Consensus 16 v~c~~~~l~~ip~~~----~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~---------------- 75 (477)
T 2id5_A 16 VLCHRKRFVAVPEGI----PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGA---------------- 75 (477)
T ss_dssp EECCSCCCSSCCSCC----CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTT----------------
T ss_pred EEeCCCCcCcCCCCC----CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhh----------------
Confidence 444455566777655 3689999999999877665 7889999999999988433222222
Q ss_pred ccccccccccCCcccccCCCcccEEecccCcccccCCCCCCCccceEEeccccCccccCCCCCcccEEEEcCCcCeeeec
Q 048004 444 MREWEDWIPHGSGQRVEGFPKLRELHILRCSKLKGTFPEHLPALEMLVIEGCEELLVSVSSLPALCKLHIGGCKKVVWRR 523 (943)
Q Consensus 444 ~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~~l~~L~~L~l~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~ 523 (943)
+..+++|++|++++| .++ .+|.. .+..+++|++|++++|.+....+
T Consensus 76 ---------------~~~l~~L~~L~L~~n-~l~-~~~~~-----------------~~~~l~~L~~L~Ls~n~i~~~~~ 121 (477)
T 2id5_A 76 ---------------FNNLFNLRTLGLRSN-RLK-LIPLG-----------------VFTGLSNLTKLDISENKIVILLD 121 (477)
T ss_dssp ---------------TTTCTTCCEEECCSS-CCC-SCCTT-----------------SSTTCTTCCEEECTTSCCCEECT
T ss_pred ---------------hhCCccCCEEECCCC-cCC-ccCcc-----------------cccCCCCCCEEECCCCccccCCh
Confidence 344677777877773 555 44421 23344555555555555555544
Q ss_pred cccCCCCCccEEEEecccccchhhhhhhhhhhccCCccEEeecCCCCcccchhhhhhHHhhhhhcccccccEEEeecCCC
Q 048004 524 PLKLRLPKLEELEIENMKEQTYIWKSHKELLQDICSLKRLTIDSCPKLQSLVAEEEKDQQQQLCELSCRLEYLTLSGCQG 603 (943)
Q Consensus 524 ~~~~~l~~L~~L~l~~~~~~~~i~~~~~~~~~~l~~L~~L~l~~~~~L~~l~~~~~~~~~~~l~~~~~~L~~L~l~~~~~ 603 (943)
..+..+++|+.|++++|..... ....+..+++|+.|++++| .++.+...... .+++|+.|++++|..
T Consensus 122 ~~~~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n-~l~~~~~~~l~--------~l~~L~~L~l~~n~i 188 (477)
T 2id5_A 122 YMFQDLYNLKSLEVGDNDLVYI----SHRAFSGLNSLEQLTLEKC-NLTSIPTEALS--------HLHGLIVLRLRHLNI 188 (477)
T ss_dssp TTTTTCTTCCEEEECCTTCCEE----CTTSSTTCTTCCEEEEESC-CCSSCCHHHHT--------TCTTCCEEEEESCCC
T ss_pred hHccccccCCEEECCCCcccee----ChhhccCCCCCCEEECCCC-cCcccChhHhc--------ccCCCcEEeCCCCcC
Confidence 4555555555555554433221 1112223333333333333 12211111100 013555555555554
Q ss_pred CCCCCccccCccccceEEeccCCCccccCC-ccCCCCccEEEeccCCCCcccccccccCCCCCCCeEEEeecCCCccccC
Q 048004 604 LVKLPQSSLSLNSLREIEIYKCSSLVSFPE-VALPSKLKKIEIRECDALKSLPEAWMCGTNSSLEILSIQGCHSLTYIAG 682 (943)
Q Consensus 604 l~~l~~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~ 682 (943)
....+..+..+++|++|++++|..+..++. .....+|++|++++|. ++.++...+ ..+++|+.|++++|.. +.+
T Consensus 189 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~-~~l~~L~~L~Ls~n~l-~~~-- 263 (477)
T 2id5_A 189 NAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCN-LTAVPYLAV-RHLVYLRFLNLSYNPI-STI-- 263 (477)
T ss_dssp CEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSC-CCSCCHHHH-TTCTTCCEEECCSSCC-CEE--
T ss_pred cEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCc-ccccCHHHh-cCccccCeeECCCCcC-Ccc--
Confidence 444444555666666666666655555543 2223355666665542 334443222 4555555555555541 111
Q ss_pred ccCCCCccEEEeccCCCccccccccccccCCCCCCCeeeeeccCCcccccccCCCCCCcCeEeecCCCCceecCCCCCCC
Q 048004 683 VQLPPSLKRLEIDFCDNLRTLTVEEGIQSSSSSSSSSRSIWTCENLKFLPSGLHNLRQLQEIEIWECENLVSFPQGGLPC 762 (943)
Q Consensus 683 ~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~~~L~~l~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l 762 (943)
.+..+.++++|++|++++|...+..|..+..+
T Consensus 264 ------------------------------------------------~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 295 (477)
T 2id5_A 264 ------------------------------------------------EGSMLHELLRLQEIQLVGGQLAVVEPYAFRGL 295 (477)
T ss_dssp ------------------------------------------------CTTSCTTCTTCCEEECCSSCCSEECTTTBTTC
T ss_pred ------------------------------------------------ChhhccccccCCEEECCCCccceECHHHhcCc
Confidence 12446778889999999998877778888888
Q ss_pred CCcceEeecccCCCCccccccCCCCccceEEecCCCchhhhhhhh
Q 048004 763 AKLSMLTVYGCERLKALPKGLHNLTNLHSLEIHGNTKIWKSMIEW 807 (943)
Q Consensus 763 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~ 807 (943)
++|++|++++|.+.+..+..+..+++|+.|++++|+........|
T Consensus 296 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~~~~ 340 (477)
T 2id5_A 296 NYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCRLLW 340 (477)
T ss_dssp TTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSGGGHH
T ss_pred ccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCccchHh
Confidence 999999999998876666677889999999999998665444334
No 34
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.92 E-value=8.9e-24 Score=240.31 Aligned_cols=137 Identities=20% Similarity=0.211 Sum_probs=91.6
Q ss_pred ccCCCCCCcCeEeecCCCCceecCCCCCCCCCcceEeecccCCCCccccccCCCCccceEEecCCCchhhhhhhhccccC
Q 048004 733 SGLHNLRQLQEIEIWECENLVSFPQGGLPCAKLSMLTVYGCERLKALPKGLHNLTNLHSLEIHGNTKIWKSMIEWGRGFH 812 (943)
Q Consensus 733 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~ 812 (943)
..+..+++|++|++++|+..+.+|.......+|++|++++|.+....+..+..+++|+.|++++|...... +..+.
T Consensus 194 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~----~~~~~ 269 (477)
T 2id5_A 194 YSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIE----GSMLH 269 (477)
T ss_dssp TCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEEC----TTSCT
T ss_pred hhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccC----hhhcc
Confidence 34566778888888888777777777666668888888887665443356777788888888887644321 12367
Q ss_pred CCCCcCEEEEeecCCCceecCCCccccCCCCCCCCccceeeccCCCCCccccc-ccccCCCCCeEEEcCCC
Q 048004 813 RFSSLRELKISRCDDDMVSFPPEDIRLGTTLPLPASLTSLEIGYFPNLERLSS-SIVDLQNLTSLFLYHCP 882 (943)
Q Consensus 813 ~l~~L~~L~ls~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~-~~~~l~~L~~L~l~~c~ 882 (943)
.+++|++|++++| .+..++...+ ..+++|+.|++++| .++.++. .+..+++|+.|++++++
T Consensus 270 ~l~~L~~L~L~~n--~l~~~~~~~~------~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 331 (477)
T 2id5_A 270 ELLRLQEIQLVGG--QLAVVEPYAF------RGLNYLRVLNVSGN-QLTTLEESVFHSVGNLETLILDSNP 331 (477)
T ss_dssp TCTTCCEEECCSS--CCSEECTTTB------TTCTTCCEEECCSS-CCSCCCGGGBSCGGGCCEEECCSSC
T ss_pred ccccCCEEECCCC--ccceECHHHh------cCcccCCEEECCCC-cCceeCHhHcCCCcccCEEEccCCC
Confidence 7778888888776 4444444333 56677777777775 4555554 34566777777777655
No 35
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.91 E-value=2.2e-23 Score=226.44 Aligned_cols=235 Identities=17% Similarity=0.104 Sum_probs=136.5
Q ss_pred cccEEEeecCCCCCCCCccccCccccceEEeccCCCccccCCccCCCCccEEEeccCCCCcccccccccCCCCCCCeEEE
Q 048004 592 RLEYLTLSGCQGLVKLPQSSLSLNSLREIEIYKCSSLVSFPEVALPSKLKKIEIRECDALKSLPEAWMCGTNSSLEILSI 671 (943)
Q Consensus 592 ~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l 671 (943)
+|++|++++|... .++. +..+++|++|++++|.....++.+..+++|++|++++|... .++. + ..+++|++|++
T Consensus 111 ~L~~L~l~~n~i~-~~~~-~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~-~~~~-~--~~l~~L~~L~l 184 (347)
T 4fmz_A 111 NLRELYLNEDNIS-DISP-LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVK-DVTP-I--ANLTDLYSLSL 184 (347)
T ss_dssp TCSEEECTTSCCC-CCGG-GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCC-CCGG-G--GGCTTCSEEEC
T ss_pred cCCEEECcCCccc-Cchh-hccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcC-Cchh-h--ccCCCCCEEEc
Confidence 4444444444432 2222 55566666666666655555555555566666666664322 2222 1 45556666666
Q ss_pred eecCCCccccCccCCCCccEEEeccCCCccccccccccccCCCCCCCeeeeeccCCcccccccCCCCCCcCeEeecCCCC
Q 048004 672 QGCHSLTYIAGVQLPPSLKRLEIDFCDNLRTLTVEEGIQSSSSSSSSSRSIWTCENLKFLPSGLHNLRQLQEIEIWECEN 751 (943)
Q Consensus 672 ~~~~~l~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~~~L~~l~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~ 751 (943)
++|.. .. ++. +..+++|+.|++++|..
T Consensus 185 ~~n~l-~~---------------------------------------------------~~~-~~~l~~L~~L~l~~n~l 211 (347)
T 4fmz_A 185 NYNQI-ED---------------------------------------------------ISP-LASLTSLHYFTAYVNQI 211 (347)
T ss_dssp TTSCC-CC---------------------------------------------------CGG-GGGCTTCCEEECCSSCC
T ss_pred cCCcc-cc---------------------------------------------------ccc-ccCCCccceeecccCCC
Confidence 55541 11 111 34456677777766654
Q ss_pred ceecCCCCCCCCCcceEeecccCCCCccccccCCCCccceEEecCCCchhhhhhhhccccCCCCCcCEEEEeecCCCcee
Q 048004 752 LVSFPQGGLPCAKLSMLTVYGCERLKALPKGLHNLTNLHSLEIHGNTKIWKSMIEWGRGFHRFSSLRELKISRCDDDMVS 831 (943)
Q Consensus 752 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~ 831 (943)
.+..+ +..+++|++|++++|.+.+.. . +..+++|++|++++|..... ..+..+++|++|++++| .+..
T Consensus 212 ~~~~~--~~~~~~L~~L~l~~n~l~~~~-~-~~~l~~L~~L~l~~n~l~~~------~~~~~l~~L~~L~l~~n--~l~~ 279 (347)
T 4fmz_A 212 TDITP--VANMTRLNSLKIGNNKITDLS-P-LANLSQLTWLEIGTNQISDI------NAVKDLTKLKMLNVGSN--QISD 279 (347)
T ss_dssp CCCGG--GGGCTTCCEEECCSSCCCCCG-G-GTTCTTCCEEECCSSCCCCC------GGGTTCTTCCEEECCSS--CCCC
T ss_pred CCCch--hhcCCcCCEEEccCCccCCCc-c-hhcCCCCCEEECCCCccCCC------hhHhcCCCcCEEEccCC--ccCC
Confidence 44333 455667777777776654332 2 66777777777777754332 12666777777777776 3433
Q ss_pred cCCCccccCCCCCCCCccceeeccCCCCCcccccccccCCCCCeEEEcCCCCCCCCCCCCCCcccceeeecCCcc
Q 048004 832 FPPEDIRLGTTLPLPASLTSLEIGYFPNLERLSSSIVDLQNLTSLFLYHCPKLKYFPEKGLPSSLLELIIYRCPL 906 (943)
Q Consensus 832 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~i~~c~~ 906 (943)
++. +..+++|++|++++|......+..+..+++|+.|++++|+ ++.+++...+++|+.|++++|+.
T Consensus 280 ~~~--------~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~-l~~~~~~~~l~~L~~L~l~~N~i 345 (347)
T 4fmz_A 280 ISV--------LNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNH-ITDIRPLASLSKMDSADFANQVI 345 (347)
T ss_dssp CGG--------GGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSS-CCCCGGGGGCTTCSEESSSCC--
T ss_pred Chh--------hcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCc-cccccChhhhhccceeehhhhcc
Confidence 321 1466777888888775444555567778888888888875 55555544467888888888874
No 36
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.91 E-value=9.6e-24 Score=229.32 Aligned_cols=96 Identities=20% Similarity=0.403 Sum_probs=66.4
Q ss_pred CCCcccEEEecCccccccCccccCCCcccEEecCCCCCcccchhHhhcccCcEEecCCCcchhhchHhhccccccccccc
Q 048004 175 KPQRLRAFSLRGYYIFELPDSVGDLRYLRYLNLCGTKIRTLPESVNKLYNLHSLLLEDCDRLKKLCADMGNLAKLHHLKN 254 (943)
Q Consensus 175 ~l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~L~~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~~~~L~~L~~L~l 254 (943)
.+++|+.|+++++.+..+|. +..+++|++|++++|.++.+|. +..+++|++|++++| .+..+| .++++++|++|++
T Consensus 42 ~l~~L~~L~l~~~~i~~~~~-~~~~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n-~i~~~~-~~~~l~~L~~L~l 117 (347)
T 4fmz_A 42 ELESITKLVVAGEKVASIQG-IEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTN-KITDIS-ALQNLTNLRELYL 117 (347)
T ss_dssp HHTTCSEEECCSSCCCCCTT-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSS-CCCCCG-GGTTCTTCSEEEC
T ss_pred hcccccEEEEeCCccccchh-hhhcCCccEEEccCCccccchh-hhcCCcCCEEEccCC-cccCch-HHcCCCcCCEEEC
Confidence 55677777777777777754 6777777777777777777766 777777777777774 455555 5777777777777
Q ss_pred CCCCccccCCcccCCccccccc
Q 048004 255 SNTKSLEEMPVGIGKLTSLQTL 276 (943)
Q Consensus 255 ~~~~~~~~~p~~i~~L~~L~~L 276 (943)
++|. +..+|. +..+++|++|
T Consensus 118 ~~n~-i~~~~~-~~~l~~L~~L 137 (347)
T 4fmz_A 118 NEDN-ISDISP-LANLTKMYSL 137 (347)
T ss_dssp TTSC-CCCCGG-GTTCTTCCEE
T ss_pred cCCc-ccCchh-hccCCceeEE
Confidence 7776 555544 4445555444
No 37
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.91 E-value=1.7e-23 Score=243.90 Aligned_cols=90 Identities=14% Similarity=0.149 Sum_probs=65.8
Q ss_pred CCCcccEEEecCccccccCcc-ccCCCcccEEecCCCCCcccc-hhHhhcccCcEEecCCCcchhhchHhhccccccccc
Q 048004 175 KPQRLRAFSLRGYYIFELPDS-VGDLRYLRYLNLCGTKIRTLP-ESVNKLYNLHSLLLEDCDRLKKLCADMGNLAKLHHL 252 (943)
Q Consensus 175 ~l~~L~~L~L~~~~i~~lp~~-~~~L~~L~~L~L~~n~i~~lp-~~i~~L~~L~~L~L~~~~~l~~lp~~~~~L~~L~~L 252 (943)
.+.++++|+++++.+..+|.. |..+++|++|+|++|.++.+| ..|+.+++|++|+|++|......|..|+++++|++|
T Consensus 49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 128 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 128 (597)
T ss_dssp GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence 456788888888888888755 577888888888888888776 467888888888888765433334456788888888
Q ss_pred ccCCCCccccCCc
Q 048004 253 KNSNTKSLEEMPV 265 (943)
Q Consensus 253 ~l~~~~~~~~~p~ 265 (943)
++++|. +..+|.
T Consensus 129 ~L~~n~-l~~l~~ 140 (597)
T 3oja_B 129 VLERND-LSSLPR 140 (597)
T ss_dssp ECCSSC-CCCCCT
T ss_pred EeeCCC-CCCCCH
Confidence 888776 555554
No 38
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.91 E-value=1.8e-23 Score=230.82 Aligned_cols=101 Identities=17% Similarity=0.187 Sum_probs=76.5
Q ss_pred CCCcccEEEecCccccccCcc-ccCCCcccEEecCCCCCcccc-hhHhhcccCcEEecCCCcchhhchHhhccccccccc
Q 048004 175 KPQRLRAFSLRGYYIFELPDS-VGDLRYLRYLNLCGTKIRTLP-ESVNKLYNLHSLLLEDCDRLKKLCADMGNLAKLHHL 252 (943)
Q Consensus 175 ~l~~L~~L~L~~~~i~~lp~~-~~~L~~L~~L~L~~n~i~~lp-~~i~~L~~L~~L~L~~~~~l~~lp~~~~~L~~L~~L 252 (943)
.++++++|+++++.++.+|.. +..+++|++|+|++|.++.+| ..++.+++|++|++++|......|..|+++++|++|
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 122 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 122 (390)
T ss_dssp GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEE
Confidence 557788888888888888765 577888888888888888776 467888888888888864434345557888888888
Q ss_pred ccCCCCccccCCcc-cCCccccccc
Q 048004 253 KNSNTKSLEEMPVG-IGKLTSLQTL 276 (943)
Q Consensus 253 ~l~~~~~~~~~p~~-i~~L~~L~~L 276 (943)
++++|. +..+|.+ ++.+++|++|
T Consensus 123 ~L~~n~-l~~l~~~~~~~l~~L~~L 146 (390)
T 3o6n_A 123 VLERND-LSSLPRGIFHNTPKLTTL 146 (390)
T ss_dssp ECCSSC-CCCCCTTTTTTCTTCCEE
T ss_pred ECCCCc-cCcCCHHHhcCCCCCcEE
Confidence 888887 6777766 4666666666
No 39
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.90 E-value=9.6e-23 Score=225.03 Aligned_cols=306 Identities=14% Similarity=0.106 Sum_probs=206.2
Q ss_pred CCcccEEEEcCCcCeeeeccccCCCCCccEEEEecccccchhhhhhhhhhhccCCccEEeecCCCCcccchhhhhhHHhh
Q 048004 505 LPALCKLHIGGCKKVVWRRPLKLRLPKLEELEIENMKEQTYIWKSHKELLQDICSLKRLTIDSCPKLQSLVAEEEKDQQQ 584 (943)
Q Consensus 505 l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~i~~~~~~~~~~l~~L~~L~l~~~~~L~~l~~~~~~~~~~ 584 (943)
+++++.|++++|.+..++...+..+++|+.|++++|..... +...+..+
T Consensus 44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~----~~~~~~~l--------------------------- 92 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEI----DTYAFAYA--------------------------- 92 (390)
T ss_dssp GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEE----CTTTTTTC---------------------------
T ss_pred cCCceEEEecCCchhhCChhHhcccccCcEEECCCCccccc----ChhhccCC---------------------------
Confidence 56777777777776666555555566666666665543221 11112222
Q ss_pred hhhcccccccEEEeecCCCCCCCCccccCccccceEEeccCCCccccCC--ccCCCCccEEEeccCCCCcccccccccCC
Q 048004 585 QLCELSCRLEYLTLSGCQGLVKLPQSSLSLNSLREIEIYKCSSLVSFPE--VALPSKLKKIEIRECDALKSLPEAWMCGT 662 (943)
Q Consensus 585 ~l~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~~ 662 (943)
++|++|++++|......|..+..+++|++|++++| .++.+|. +..+++|++|++++|... .++...+ ..
T Consensus 93 ------~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~-~~ 163 (390)
T 3o6n_A 93 ------HTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERN-DLSSLPRGIFHNTPKLTTLSMSNNNLE-RIEDDTF-QA 163 (390)
T ss_dssp ------TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCC-BCCTTTT-SS
T ss_pred ------CCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCC-ccCcCCHHHhcCCCCCcEEECCCCccC-ccChhhc-cC
Confidence 56777777777766555666778888888888887 4556664 356788888888886544 4433322 67
Q ss_pred CCCCCeEEEeecCCCccccCccCCCCccEEEeccCCCccccccccccccCCCCCCCeeeeeccCCcccccccCCCCCCcC
Q 048004 663 NSSLEILSIQGCHSLTYIAGVQLPPSLKRLEIDFCDNLRTLTVEEGIQSSSSSSSSSRSIWTCENLKFLPSGLHNLRQLQ 742 (943)
Q Consensus 663 ~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~~~L~~l~l~~~~~l~~lp~~~~~l~~L~ 742 (943)
+++|++|++++|.. +.++. ...++|+.++++++ .++. +...++|+
T Consensus 164 l~~L~~L~l~~n~l-~~~~~-~~l~~L~~L~l~~n-----------------------------~l~~----~~~~~~L~ 208 (390)
T 3o6n_A 164 TTSLQNLQLSSNRL-THVDL-SLIPSLFHANVSYN-----------------------------LLST----LAIPIAVE 208 (390)
T ss_dssp CTTCCEEECCSSCC-SBCCG-GGCTTCSEEECCSS-----------------------------CCSE----EECCSSCS
T ss_pred CCCCCEEECCCCcC-Ccccc-ccccccceeecccc-----------------------------cccc----cCCCCcce
Confidence 78888888888763 32221 11223444444332 1111 12246788
Q ss_pred eEeecCCCCceecCCCCCCCCCcceEeecccCCCCccccccCCCCccceEEecCCCchhhhhhhhccccCCCCCcCEEEE
Q 048004 743 EIEIWECENLVSFPQGGLPCAKLSMLTVYGCERLKALPKGLHNLTNLHSLEIHGNTKIWKSMIEWGRGFHRFSSLRELKI 822 (943)
Q Consensus 743 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l 822 (943)
+|++++|... .+|... .++|++|++++|.+.+. ..+..+++|++|++++|...... +..+..+++|++|++
T Consensus 209 ~L~l~~n~l~-~~~~~~--~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~----~~~~~~l~~L~~L~L 279 (390)
T 3o6n_A 209 ELDASHNSIN-VVRGPV--NVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIM----YHPFVKMQRLERLYI 279 (390)
T ss_dssp EEECCSSCCC-EEECCC--CSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEE----SGGGTTCSSCCEEEC
T ss_pred EEECCCCeee-eccccc--cccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcC----hhHccccccCCEEEC
Confidence 9999888544 445433 36899999999877553 46788899999999999754321 234788899999999
Q ss_pred eecCCCceecCCCccccCCCCCCCCccceeeccCCCCCcccccccccCCCCCeEEEcCCCCCCCCCCCCCCcccceeeec
Q 048004 823 SRCDDDMVSFPPEDIRLGTTLPLPASLTSLEIGYFPNLERLSSSIVDLQNLTSLFLYHCPKLKYFPEKGLPSSLLELIIY 902 (943)
Q Consensus 823 s~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~i~ 902 (943)
++| .+..+|... ..+++|++|++++| .++.+|..+..+++|+.|++++|+ ++.++. +.+++|+.|+++
T Consensus 280 ~~n--~l~~~~~~~-------~~l~~L~~L~L~~n-~l~~~~~~~~~l~~L~~L~L~~N~-i~~~~~-~~~~~L~~L~l~ 347 (390)
T 3o6n_A 280 SNN--RLVALNLYG-------QPIPTLKVLDLSHN-HLLHVERNQPQFDRLENLYLDHNS-IVTLKL-STHHTLKNLTLS 347 (390)
T ss_dssp CSS--CCCEEECSS-------SCCTTCCEEECCSS-CCCCCGGGHHHHTTCSEEECCSSC-CCCCCC-CTTCCCSEEECC
T ss_pred CCC--cCcccCccc-------CCCCCCCEEECCCC-cceecCccccccCcCCEEECCCCc-cceeCc-hhhccCCEEEcC
Confidence 987 556666443 56889999999997 677888888889999999999965 677763 346899999999
Q ss_pred CCcc
Q 048004 903 RCPL 906 (943)
Q Consensus 903 ~c~~ 906 (943)
+||.
T Consensus 348 ~N~~ 351 (390)
T 3o6n_A 348 HNDW 351 (390)
T ss_dssp SSCE
T ss_pred CCCc
Confidence 9986
No 40
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.88 E-value=6.1e-22 Score=230.85 Aligned_cols=256 Identities=16% Similarity=0.125 Sum_probs=138.6
Q ss_pred cccEEEeecCCCCCCCCccccCccccceEEeccCCCccccCC--ccCCCCccEEEeccCCCCcccccccccCCCCCCCeE
Q 048004 592 RLEYLTLSGCQGLVKLPQSSLSLNSLREIEIYKCSSLVSFPE--VALPSKLKKIEIRECDALKSLPEAWMCGTNSSLEIL 669 (943)
Q Consensus 592 ~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L 669 (943)
+|++|++++|......|..+..+++|++|++++| .++.+|. ++.+++|++|++++|...+..+..+ ..+++|++|
T Consensus 100 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~--~~l~~L~~L 176 (597)
T 3oja_B 100 TIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERN-DLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTF--QATTSLQNL 176 (597)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTT--TTCTTCCEE
T ss_pred CCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCC-CCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhh--hcCCcCcEE
Confidence 4444445444444434444555566666666655 3334442 2445566666666544332222222 455666666
Q ss_pred EEeecCCCccccCccCCCCccEEEeccCCCccccccccccccCCCCCCCeeeeeccCCcccccccCCCCCCcCeEeecCC
Q 048004 670 SIQGCHSLTYIAGVQLPPSLKRLEIDFCDNLRTLTVEEGIQSSSSSSSSSRSIWTCENLKFLPSGLHNLRQLQEIEIWEC 749 (943)
Q Consensus 670 ~l~~~~~l~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~~~L~~l~l~~~~~l~~lp~~~~~l~~L~~L~l~~~ 749 (943)
++++|.. +.++.. ..++|+.|+++++ . ++ .+...++|+.|++++|
T Consensus 177 ~L~~N~l-~~~~~~-~l~~L~~L~l~~n-~----------------------------l~----~l~~~~~L~~L~ls~n 221 (597)
T 3oja_B 177 QLSSNRL-THVDLS-LIPSLFHANVSYN-L----------------------------LS----TLAIPIAVEELDASHN 221 (597)
T ss_dssp ECTTSCC-SBCCGG-GCTTCSEEECCSS-C----------------------------CS----EEECCTTCSEEECCSS
T ss_pred ECcCCCC-CCcChh-hhhhhhhhhcccC-c----------------------------cc----cccCCchhheeeccCC
Confidence 6666542 222211 1122333333221 0 11 1122345667777666
Q ss_pred CCceecCCCCCCCCCcceEeecccCCCCccccccCCCCccceEEecCCCchhhhhhhhccccCCCCCcCEEEEeecCCCc
Q 048004 750 ENLVSFPQGGLPCAKLSMLTVYGCERLKALPKGLHNLTNLHSLEIHGNTKIWKSMIEWGRGFHRFSSLRELKISRCDDDM 829 (943)
Q Consensus 750 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~ls~n~~~~ 829 (943)
... .++.... ++|+.|++++|.+.+. ..+..+++|+.|++++|...... +..+..+++|++|+|++| .+
T Consensus 222 ~l~-~~~~~~~--~~L~~L~L~~n~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~----~~~~~~l~~L~~L~Ls~N--~l 290 (597)
T 3oja_B 222 SIN-VVRGPVN--VELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIM----YHPFVKMQRLERLYISNN--RL 290 (597)
T ss_dssp CCC-EEECSCC--SCCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEE----SGGGTTCSSCCEEECTTS--CC
T ss_pred ccc-ccccccC--CCCCEEECCCCCCCCC--hhhccCCCCCEEECCCCccCCCC----HHHhcCccCCCEEECCCC--CC
Confidence 433 3333222 4677777777765442 45666777777777777543321 223666777777777775 44
Q ss_pred eecCCCccccCCCCCCCCccceeeccCCCCCcccccccccCCCCCeEEEcCCCCCCCCCCCCCCcccceeeecCCcc
Q 048004 830 VSFPPEDIRLGTTLPLPASLTSLEIGYFPNLERLSSSIVDLQNLTSLFLYHCPKLKYFPEKGLPSSLLELIIYRCPL 906 (943)
Q Consensus 830 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~i~~c~~ 906 (943)
..+|... ..+++|+.|++++| .++.+|..+..+++|+.|++++|+ +..++. +.+++|+.|++++||.
T Consensus 291 ~~l~~~~-------~~l~~L~~L~Ls~N-~l~~i~~~~~~l~~L~~L~L~~N~-l~~~~~-~~~~~L~~L~l~~N~~ 357 (597)
T 3oja_B 291 VALNLYG-------QPIPTLKVLDLSHN-HLLHVERNQPQFDRLENLYLDHNS-IVTLKL-STHHTLKNLTLSHNDW 357 (597)
T ss_dssp CEEECSS-------SCCTTCCEEECCSS-CCCCCGGGHHHHTTCSEEECCSSC-CCCCCC-CTTCCCSEEECCSSCE
T ss_pred CCCCccc-------ccCCCCcEEECCCC-CCCccCcccccCCCCCEEECCCCC-CCCcCh-hhcCCCCEEEeeCCCC
Confidence 4455433 45677777777775 455777777777888888888754 555553 3356788888888775
No 41
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.87 E-value=4.8e-22 Score=212.51 Aligned_cols=232 Identities=25% Similarity=0.408 Sum_probs=162.5
Q ss_pred CCCcccEEEecCccccccCccccCCCcccEEecCCCCCcccchhHhhcccCcEEecCCCcchhhchHhhccccccccccc
Q 048004 175 KPQRLRAFSLRGYYIFELPDSVGDLRYLRYLNLCGTKIRTLPESVNKLYNLHSLLLEDCDRLKKLCADMGNLAKLHHLKN 254 (943)
Q Consensus 175 ~l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~L~~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~~~~L~~L~~L~l 254 (943)
...+++.|++++|.++.+|..++++++|++|+|++|.++.+|..++++++|++|++++| .+..+|..++++++|++|++
T Consensus 79 ~~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n-~l~~lp~~l~~l~~L~~L~L 157 (328)
T 4fcg_A 79 TQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARN-PLRALPASIASLNRLRELSI 157 (328)
T ss_dssp TSTTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESC-CCCCCCGGGGGCTTCCEEEE
T ss_pred cccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCC-ccccCcHHHhcCcCCCEEEC
Confidence 45789999999999999999999999999999999999999999999999999999996 55689999999999999999
Q ss_pred CCCCccccCCcccCCccccccccceeeccCCCCCchhhhcccccCCeeeeccccccCCcccchhhhcCCCCCCCeEEEEe
Q 048004 255 SNTKSLEEMPVGIGKLTSLQTLCNFVVGKGSGSGLRELKLLTHLHGTLNISKLENVKCVGDAMEAQMDGKKNLKELSLKW 334 (943)
Q Consensus 255 ~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~l~~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~ 334 (943)
++|...+.+|..++... ....+.++++|+.|++++
T Consensus 158 ~~n~~~~~~p~~~~~~~---------------------------------------------~~~~~~~l~~L~~L~L~~ 192 (328)
T 4fcg_A 158 RACPELTELPEPLASTD---------------------------------------------ASGEHQGLVNLQSLRLEW 192 (328)
T ss_dssp EEETTCCCCCSCSEEEC----------------------------------------------CCCEEESTTCCEEEEEE
T ss_pred CCCCCccccChhHhhcc---------------------------------------------chhhhccCCCCCEEECcC
Confidence 99887788887554310 001133345555555555
Q ss_pred ecCCCCCCCcchhcHHhhhccCCCCCCcceEEEeccCCCCCCcCcCCCCCCCccEEEEecCCCCCCCCCCCCCCCCCeeE
Q 048004 335 TCSTDGSSSREAETEMGVLDMLKPHTNLEQFCIKGYGGMKFPTWLGDSLFSNLVTLEFEDCGMCTALPSVGQLPSLKHLT 414 (943)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~ 414 (943)
| ....+|.++.. +++|+.|++++|.+.+..+.++.+++|++|+
T Consensus 193 n-----------------------------------~l~~lp~~l~~--l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~ 235 (328)
T 4fcg_A 193 T-----------------------------------GIRSLPASIAN--LQNLKSLKIRNSPLSALGPAIHHLPKLEELD 235 (328)
T ss_dssp E-----------------------------------CCCCCCGGGGG--CTTCCEEEEESSCCCCCCGGGGGCTTCCEEE
T ss_pred C-----------------------------------CcCcchHhhcC--CCCCCEEEccCCCCCcCchhhccCCCCCEEE
Confidence 3 33445555543 6777777777777765444666777777777
Q ss_pred EccccCeeEeCccccCCCCCccceeecccccccccccccCCcccccCCCcccEEecccCcccccCCCCCCCccceEEecc
Q 048004 415 VRGMSRVKRLGSEFCGNDPPCLETLRFENMREWEDWIPHGSGQRVEGFPKLRELHILRCSKLKGTFPEHLPALEMLVIEG 494 (943)
Q Consensus 415 l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~~l~~L~~L~l~~ 494 (943)
+++|...+.++.. ++.+++|++|++++|+... .+|.
T Consensus 236 Ls~n~~~~~~p~~-------------------------------~~~l~~L~~L~L~~n~~~~-~~p~------------ 271 (328)
T 4fcg_A 236 LRGCTALRNYPPI-------------------------------FGGRAPLKRLILKDCSNLL-TLPL------------ 271 (328)
T ss_dssp CTTCTTCCBCCCC-------------------------------TTCCCCCCEEECTTCTTCC-BCCT------------
T ss_pred CcCCcchhhhHHH-------------------------------hcCCCCCCEEECCCCCchh-hcch------------
Confidence 7776544433322 3345666666666654433 5553
Q ss_pred ccCccccCCCCCcccEEEEcCCcCeeeeccccCCCCCccEEEEec
Q 048004 495 CEELLVSVSSLPALCKLHIGGCKKVVWRRPLKLRLPKLEELEIEN 539 (943)
Q Consensus 495 ~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 539 (943)
.+..+++|++|++++|.+.+..+..+..+++|+.+.+..
T Consensus 272 ------~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~ 310 (328)
T 4fcg_A 272 ------DIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPP 310 (328)
T ss_dssp ------TGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCG
T ss_pred ------hhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCH
Confidence 334456666666666666666666666666666666554
No 42
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.87 E-value=2.6e-22 Score=213.32 Aligned_cols=250 Identities=16% Similarity=0.110 Sum_probs=188.8
Q ss_pred ccccEEEeecCCCCC--CCCccccCccccceEEecc-CCCccccCC-ccCCCCccEEEeccCCCCcccccccccCCCCCC
Q 048004 591 CRLEYLTLSGCQGLV--KLPQSSLSLNSLREIEIYK-CSSLVSFPE-VALPSKLKKIEIRECDALKSLPEAWMCGTNSSL 666 (943)
Q Consensus 591 ~~L~~L~l~~~~~l~--~l~~~~~~l~~L~~L~l~~-~~~l~~~~~-~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L 666 (943)
.+++.|++++|...+ .+|..+..+++|++|++++ |...+.+|. ++.+++|++|++++|...+.+|..+ ..+++|
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~--~~l~~L 127 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFL--SQIKTL 127 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGG--GGCTTC
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHH--hCCCCC
Confidence 478888888888776 7788888888888888885 544445553 5556777777777765554566554 566777
Q ss_pred CeEEEeecCCCccccCccCCCCccEEEeccCCCccccccccccccCCCCCCCeeeeeccCCcccccccCCCCCCcCeEee
Q 048004 667 EILSIQGCHSLTYIAGVQLPPSLKRLEIDFCDNLRTLTVEEGIQSSSSSSSSSRSIWTCENLKFLPSGLHNLRQLQEIEI 746 (943)
Q Consensus 667 ~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~~~L~~l~l~~~~~l~~lp~~~~~l~~L~~L~l 746 (943)
++|++++|...+ .+|..+..+++|++|++
T Consensus 128 ~~L~Ls~N~l~~---------------------------------------------------~~p~~~~~l~~L~~L~L 156 (313)
T 1ogq_A 128 VTLDFSYNALSG---------------------------------------------------TLPPSISSLPNLVGITF 156 (313)
T ss_dssp CEEECCSSEEES---------------------------------------------------CCCGGGGGCTTCCEEEC
T ss_pred CEEeCCCCccCC---------------------------------------------------cCChHHhcCCCCCeEEC
Confidence 777776665211 23566777889999999
Q ss_pred cCCCCceecCCCCCCCC-CcceEeecccCCCCccccccCCCCccceEEecCCCchhhhhhhhccccCCCCCcCEEEEeec
Q 048004 747 WECENLVSFPQGGLPCA-KLSMLTVYGCERLKALPKGLHNLTNLHSLEIHGNTKIWKSMIEWGRGFHRFSSLRELKISRC 825 (943)
Q Consensus 747 ~~~~~~~~~~~~~~~l~-~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~ls~n 825 (943)
++|...+.+|..+..++ +|++|++++|.+.+.+|..+..++ |++|++++|..... .+..+..+++|++|++++|
T Consensus 157 ~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~----~~~~~~~l~~L~~L~L~~N 231 (313)
T 1ogq_A 157 DGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGD----ASVLFGSDKNTQKIHLAKN 231 (313)
T ss_dssp CSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEEC----CGGGCCTTSCCSEEECCSS
T ss_pred cCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCc----CCHHHhcCCCCCEEECCCC
Confidence 99988778888888887 899999999988888888888887 99999999875432 2334788899999999987
Q ss_pred CCCceecCCCccccCCCCCCCCccceeeccCCCCCcccccccccCCCCCeEEEcCCCCCCCCCCCCCCcccceeeecCCc
Q 048004 826 DDDMVSFPPEDIRLGTTLPLPASLTSLEIGYFPNLERLSSSIVDLQNLTSLFLYHCPKLKYFPEKGLPSSLLELIIYRCP 905 (943)
Q Consensus 826 ~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~i~~c~ 905 (943)
.+...+... ..+++|++|++++|...+.+|..+..+++|+.|++++|+.-..+|..+-+++|+.+++++||
T Consensus 232 --~l~~~~~~~-------~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 232 --SLAFDLGKV-------GLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNK 302 (313)
T ss_dssp --EECCBGGGC-------CCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSS
T ss_pred --ceeeecCcc-------cccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCCccccccChHHhcCCC
Confidence 333222222 56789999999998665588988999999999999998665588887668899999999999
Q ss_pred ch
Q 048004 906 LI 907 (943)
Q Consensus 906 ~l 907 (943)
.+
T Consensus 303 ~l 304 (313)
T 1ogq_A 303 CL 304 (313)
T ss_dssp EE
T ss_pred Cc
Confidence 74
No 43
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.87 E-value=2.7e-21 Score=208.04 Aligned_cols=289 Identities=17% Similarity=0.158 Sum_probs=148.3
Q ss_pred cccEEEecCccccccCccccCCCcccEEecCCCCCcccch-hHhhcccCcEEecCCCcchhhchHhhcccccccccccCC
Q 048004 178 RLRAFSLRGYYIFELPDSVGDLRYLRYLNLCGTKIRTLPE-SVNKLYNLHSLLLEDCDRLKKLCADMGNLAKLHHLKNSN 256 (943)
Q Consensus 178 ~L~~L~L~~~~i~~lp~~~~~L~~L~~L~L~~n~i~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~~~~~L~~L~~L~l~~ 256 (943)
++++++++++.++.+|..+. ++|++|+|++|.++.+|. .++++++|++|++++|......|..|+++++|++|++++
T Consensus 32 ~l~~l~~~~~~l~~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~ 109 (330)
T 1xku_A 32 HLRVVQCSDLGLEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSK 109 (330)
T ss_dssp ETTEEECTTSCCCSCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CCeEEEecCCCccccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCC
Confidence 45555555555555554443 355555555555555543 455555555555555432222245555555555555555
Q ss_pred CCccccCCcccCCccccccccceeeccCCCCCchhhhcccccCCeeeeccccccCCcccchhhhcCCCCCCCeEEEEeec
Q 048004 257 TKSLEEMPVGIGKLTSLQTLCNFVVGKGSGSGLRELKLLTHLHGTLNISKLENVKCVGDAMEAQMDGKKNLKELSLKWTC 336 (943)
Q Consensus 257 ~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~l~~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 336 (943)
|. ++.+|..+. ++|++|+... +.+ ....+..+.++++|+.|++++|.
T Consensus 110 n~-l~~l~~~~~--~~L~~L~l~~------------------------n~l------~~~~~~~~~~l~~L~~L~l~~n~ 156 (330)
T 1xku_A 110 NQ-LKELPEKMP--KTLQELRVHE------------------------NEI------TKVRKSVFNGLNQMIVVELGTNP 156 (330)
T ss_dssp SC-CSBCCSSCC--TTCCEEECCS------------------------SCC------CBBCHHHHTTCTTCCEEECCSSC
T ss_pred Cc-CCccChhhc--ccccEEECCC------------------------Ccc------cccCHhHhcCCccccEEECCCCc
Confidence 55 445554433 3444441110 000 01112224445555555554432
Q ss_pred CCCCCCCcchhcHHhhhccCCCCCCcceEEEeccCCCCCCcCcCCCCCCCccEEEEecCCCCCCCC-CCCCCCCCCeeEE
Q 048004 337 STDGSSSREAETEMGVLDMLKPHTNLEQFCIKGYGGMKFPTWLGDSLFSNLVTLEFEDCGMCTALP-SVGQLPSLKHLTV 415 (943)
Q Consensus 337 ~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~l 415 (943)
.... ......+...++|+.|.+.++....+|..+ +++|++|++++|.+....+ .+..+++|+.|++
T Consensus 157 l~~~---------~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~----~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L 223 (330)
T 1xku_A 157 LKSS---------GIENGAFQGMKKLSYIRIADTNITTIPQGL----PPSLTELHLDGNKITKVDAASLKGLNNLAKLGL 223 (330)
T ss_dssp CCGG---------GBCTTGGGGCTTCCEEECCSSCCCSCCSSC----CTTCSEEECTTSCCCEECTGGGTTCTTCCEEEC
T ss_pred CCcc---------CcChhhccCCCCcCEEECCCCccccCCccc----cccCCEEECCCCcCCccCHHHhcCCCCCCEEEC
Confidence 1100 000112233455666666666666666554 3678888888887766554 6777788888888
Q ss_pred ccccCeeEeCccccCCCCCccceeecccccccccccccCCcccccCCCcccEEecccCcccccCCCCCCCccceEEeccc
Q 048004 416 RGMSRVKRLGSEFCGNDPPCLETLRFENMREWEDWIPHGSGQRVEGFPKLRELHILRCSKLKGTFPEHLPALEMLVIEGC 495 (943)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~~l~~L~~L~l~~~ 495 (943)
++|.. +.++.. .+..+++|++|++++| .++ .+|.
T Consensus 224 s~n~l-~~~~~~------------------------------~~~~l~~L~~L~L~~N-~l~-~lp~------------- 257 (330)
T 1xku_A 224 SFNSI-SAVDNG------------------------------SLANTPHLRELHLNNN-KLV-KVPG------------- 257 (330)
T ss_dssp CSSCC-CEECTT------------------------------TGGGSTTCCEEECCSS-CCS-SCCT-------------
T ss_pred CCCcC-ceeChh------------------------------hccCCCCCCEEECCCC-cCc-cCCh-------------
Confidence 77742 222211 1334677777777774 555 5553
Q ss_pred cCccccCCCCCcccEEEEcCCcCeeeeccccCC------CCCccEEEEecccccchhhhhhhhhhhccCCccEEeecC
Q 048004 496 EELLVSVSSLPALCKLHIGGCKKVVWRRPLKLR------LPKLEELEIENMKEQTYIWKSHKELLQDICSLKRLTIDS 567 (943)
Q Consensus 496 ~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~------l~~L~~L~l~~~~~~~~i~~~~~~~~~~l~~L~~L~l~~ 567 (943)
.+..+++|++|++++|.+..+....+.. .+.|+.|++++|+.... ...+..+..+.+++.+++++
T Consensus 258 -----~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~--~i~~~~f~~~~~l~~l~L~~ 328 (330)
T 1xku_A 258 -----GLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYW--EIQPSTFRCVYVRAAVQLGN 328 (330)
T ss_dssp -----TTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGG--GSCGGGGTTCCCGGGEEC--
T ss_pred -----hhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCccccc--ccCccccccccceeEEEecc
Confidence 3445677777777777777666555532 25566666666654321 12223344444444444443
No 44
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.87 E-value=1.2e-20 Score=202.99 Aligned_cols=137 Identities=12% Similarity=0.006 Sum_probs=92.1
Q ss_pred CCcCeEeecCCCCceecCCCCCCCCCcceEeecccCCCCccccccCCCCccceEEecCCCchhhhhhhhccccCCCCCcC
Q 048004 739 RQLQEIEIWECENLVSFPQGGLPCAKLSMLTVYGCERLKALPKGLHNLTNLHSLEIHGNTKIWKSMIEWGRGFHRFSSLR 818 (943)
Q Consensus 739 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~ 818 (943)
++|++|++++|...+..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|... .++..+..+++|+
T Consensus 193 ~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-----~lp~~l~~l~~L~ 267 (332)
T 2ft3_A 193 ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-----RVPAGLPDLKLLQ 267 (332)
T ss_dssp SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-----BCCTTGGGCTTCC
T ss_pred CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-----ecChhhhcCccCC
Confidence 67888888888766666667777888888888888776666667788888888888888644 2334477788888
Q ss_pred EEEEeecCCCceecCCCccccCCCCCCCCccceeeccCCCCC--cccccccccCCCCCeEEEcCCC
Q 048004 819 ELKISRCDDDMVSFPPEDIRLGTTLPLPASLTSLEIGYFPNL--ERLSSSIVDLQNLTSLFLYHCP 882 (943)
Q Consensus 819 ~L~ls~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l--~~l~~~~~~l~~L~~L~l~~c~ 882 (943)
+|++++| .+..++.+.+.........++|+.|++++++.. +..|..+..+++|+.+++++|.
T Consensus 268 ~L~l~~N--~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 268 VVYLHTN--NITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp EEECCSS--CCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred EEECCCC--CCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 8888886 566666655432222223566778888877643 3344556677777777777653
No 45
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.86 E-value=2e-21 Score=209.17 Aligned_cols=289 Identities=16% Similarity=0.125 Sum_probs=166.2
Q ss_pred cccEEEecCccccccCccccCCCcccEEecCCCCCcccc-hhHhhcccCcEEecCCCcchhhchHhhcccccccccccCC
Q 048004 178 RLRAFSLRGYYIFELPDSVGDLRYLRYLNLCGTKIRTLP-ESVNKLYNLHSLLLEDCDRLKKLCADMGNLAKLHHLKNSN 256 (943)
Q Consensus 178 ~L~~L~L~~~~i~~lp~~~~~L~~L~~L~L~~n~i~~lp-~~i~~L~~L~~L~L~~~~~l~~lp~~~~~L~~L~~L~l~~ 256 (943)
++++++++++.++.+|..+. ++|++|+|++|.++.+| ..++++++|++|++++|......|..|+++++|++|++++
T Consensus 34 ~l~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 111 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISK 111 (332)
T ss_dssp ETTEEECCSSCCSSCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCS
T ss_pred cCCEEECCCCCccccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCC
Confidence 56667777766666666553 46677777777766664 4566777777777776543333356666777777777776
Q ss_pred CCccccCCcccCCccccccccceeeccCCCCCchhhhcccccCCeeeeccccccCCcccchhhhcCCCCCCCeEEEEeec
Q 048004 257 TKSLEEMPVGIGKLTSLQTLCNFVVGKGSGSGLRELKLLTHLHGTLNISKLENVKCVGDAMEAQMDGKKNLKELSLKWTC 336 (943)
Q Consensus 257 ~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~l~~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 336 (943)
|. +..+|..+. ++|++|+.... .+.. ..+..+..+++|+.|++++|.
T Consensus 112 n~-l~~l~~~~~--~~L~~L~l~~n------------------------~i~~------~~~~~~~~l~~L~~L~l~~n~ 158 (332)
T 2ft3_A 112 NH-LVEIPPNLP--SSLVELRIHDN------------------------RIRK------VPKGVFSGLRNMNCIEMGGNP 158 (332)
T ss_dssp SC-CCSCCSSCC--TTCCEEECCSS------------------------CCCC------CCSGGGSSCSSCCEEECCSCC
T ss_pred Cc-CCccCcccc--ccCCEEECCCC------------------------ccCc------cCHhHhCCCccCCEEECCCCc
Confidence 66 566666544 55555522111 1110 011224556666666665542
Q ss_pred CCCCCCCcchhcHHhhhccCCCCCCcceEEEeccCCCCCCcCcCCCCCCCccEEEEecCCCCCCCC-CCCCCCCCCeeEE
Q 048004 337 STDGSSSREAETEMGVLDMLKPHTNLEQFCIKGYGGMKFPTWLGDSLFSNLVTLEFEDCGMCTALP-SVGQLPSLKHLTV 415 (943)
Q Consensus 337 ~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~l 415 (943)
.... ......+... +|+.|++.++....+|..+ .++|+.|++++|.+....+ .+..+++|+.|++
T Consensus 159 l~~~---------~~~~~~~~~l-~L~~L~l~~n~l~~l~~~~----~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L 224 (332)
T 2ft3_A 159 LENS---------GFEPGAFDGL-KLNYLRISEAKLTGIPKDL----PETLNELHLDHNKIQAIELEDLLRYSKLYRLGL 224 (332)
T ss_dssp CBGG---------GSCTTSSCSC-CCSCCBCCSSBCSSCCSSS----CSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBC
T ss_pred cccC---------CCCcccccCC-ccCEEECcCCCCCccCccc----cCCCCEEECCCCcCCccCHHHhcCCCCCCEEEC
Confidence 2100 0001122222 6777777777777777655 3678888888888876664 6788888888888
Q ss_pred ccccCeeEeCccccCCCCCccceeecccccccccccccCCcccccCCCcccEEecccCcccccCCCCCCCccceEEeccc
Q 048004 416 RGMSRVKRLGSEFCGNDPPCLETLRFENMREWEDWIPHGSGQRVEGFPKLRELHILRCSKLKGTFPEHLPALEMLVIEGC 495 (943)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~~l~~L~~L~l~~~ 495 (943)
++|.. ..++.. .+..+++|++|++++| +++ .+|.
T Consensus 225 ~~N~l-~~~~~~------------------------------~~~~l~~L~~L~L~~N-~l~-~lp~------------- 258 (332)
T 2ft3_A 225 GHNQI-RMIENG------------------------------SLSFLPTLRELHLDNN-KLS-RVPA------------- 258 (332)
T ss_dssp CSSCC-CCCCTT------------------------------GGGGCTTCCEEECCSS-CCC-BCCT-------------
T ss_pred CCCcC-CcCChh------------------------------HhhCCCCCCEEECCCC-cCe-ecCh-------------
Confidence 88742 222110 1344677788888774 555 5553
Q ss_pred cCccccCCCCCcccEEEEcCCcCeeeeccccCC------CCCccEEEEecccccchhhhhhhhhhhccCCccEEeecCC
Q 048004 496 EELLVSVSSLPALCKLHIGGCKKVVWRRPLKLR------LPKLEELEIENMKEQTYIWKSHKELLQDICSLKRLTIDSC 568 (943)
Q Consensus 496 ~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~------l~~L~~L~l~~~~~~~~i~~~~~~~~~~l~~L~~L~l~~~ 568 (943)
.+..+++|++|++++|.+.......+.. .++|+.|++.+|+.... ...+..+..+++|+.++++++
T Consensus 259 -----~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~--~~~~~~~~~l~~L~~l~l~~n 330 (332)
T 2ft3_A 259 -----GLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYW--EVQPATFRCVTDRLAIQFGNY 330 (332)
T ss_dssp -----TGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGG--GSCGGGGTTBCCSTTEEC---
T ss_pred -----hhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCccccc--ccCcccccccchhhhhhcccc
Confidence 3445667777777777776666555443 35567777777664321 123344455555555555544
No 46
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.86 E-value=3.6e-20 Score=199.21 Aligned_cols=136 Identities=12% Similarity=-0.003 Sum_probs=69.8
Q ss_pred CCcCeEeecCCCCceecCCCCCCCCCcceEeecccCCCCccccccCCCCccceEEecCCCchhhhhhhhccccCCCCCcC
Q 048004 739 RQLQEIEIWECENLVSFPQGGLPCAKLSMLTVYGCERLKALPKGLHNLTNLHSLEIHGNTKIWKSMIEWGRGFHRFSSLR 818 (943)
Q Consensus 739 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~ 818 (943)
++|++|++++|...+..|..+..+++|++|++++|.+.+..+..+..+++|++|++++|... .++..+..+++|+
T Consensus 192 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-----~lp~~l~~l~~L~ 266 (330)
T 1xku_A 192 PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-----KVPGGLADHKYIQ 266 (330)
T ss_dssp TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-----SCCTTTTTCSSCC
T ss_pred ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-----cCChhhccCCCcC
Confidence 55666666666544444555555566666666666554444445556666666666666433 2223355566666
Q ss_pred EEEEeecCCCceecCCCccccCCCCCCCCccceeeccCCCCCc--ccccccccCCCCCeEEEcCC
Q 048004 819 ELKISRCDDDMVSFPPEDIRLGTTLPLPASLTSLEIGYFPNLE--RLSSSIVDLQNLTSLFLYHC 881 (943)
Q Consensus 819 ~L~ls~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~--~l~~~~~~l~~L~~L~l~~c 881 (943)
+|++++| .+..++...|.........++++.|++++++... ..|..+..+++++.++++++
T Consensus 267 ~L~l~~N--~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 267 VVYLHNN--NISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329 (330)
T ss_dssp EEECCSS--CCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC---
T ss_pred EEECCCC--cCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEeccc
Confidence 6666665 4555554444222222234556666666654321 22334455555666655543
No 47
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.85 E-value=2.2e-21 Score=207.41 Aligned_cols=123 Identities=23% Similarity=0.384 Sum_probs=103.7
Q ss_pred CCCcceeeeecccCCCCCCCCCCccccccCCCcccEEEecCccccccCccccCCCcccEEecCCCCCcccchhHhhcccC
Q 048004 146 IQHLRTFLPVMLTNSRPGFLAPSILPKLLKPQRLRAFSLRGYYIFELPDSVGDLRYLRYLNLCGTKIRTLPESVNKLYNL 225 (943)
Q Consensus 146 ~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~L~~n~i~~lp~~i~~L~~L 225 (943)
..+++.|.+.... -..+++.++++++|++|++++|.+..+|..++++++|++|+|++|.++.+|..++++++|
T Consensus 80 ~~~l~~L~L~~n~-------l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L 152 (328)
T 4fcg_A 80 QPGRVALELRSVP-------LPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRL 152 (328)
T ss_dssp STTCCEEEEESSC-------CSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTC
T ss_pred ccceeEEEccCCC-------chhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCC
Confidence 4677888766543 236677777999999999999999999999999999999999999999999999999999
Q ss_pred cEEecCCCcchhhchHhhcc---------cccccccccCCCCccccCCcccCCccccccc
Q 048004 226 HSLLLEDCDRLKKLCADMGN---------LAKLHHLKNSNTKSLEEMPVGIGKLTSLQTL 276 (943)
Q Consensus 226 ~~L~L~~~~~l~~lp~~~~~---------L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L 276 (943)
++|++++|+.+..+|..++. +++|++|++++|. +..+|..++++++|++|
T Consensus 153 ~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~-l~~lp~~l~~l~~L~~L 211 (328)
T 4fcg_A 153 RELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTG-IRSLPASIANLQNLKSL 211 (328)
T ss_dssp CEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEEC-CCCCCGGGGGCTTCCEE
T ss_pred CEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCC-cCcchHhhcCCCCCCEE
Confidence 99999999889999987765 8888888888887 66777666666555555
No 48
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.85 E-value=3.2e-22 Score=234.71 Aligned_cols=375 Identities=11% Similarity=0.047 Sum_probs=205.7
Q ss_pred CCCcccEEecccCcccccCCC----CCCCc-cceEEeccccCcc-----ccCCCCCcccEEEEcCCcCeee----ecccc
Q 048004 461 GFPKLRELHILRCSKLKGTFP----EHLPA-LEMLVIEGCEELL-----VSVSSLPALCKLHIGGCKKVVW----RRPLK 526 (943)
Q Consensus 461 ~~~~L~~L~l~~c~~l~~~~p----~~l~~-L~~L~l~~~~~l~-----~~~~~l~~L~~L~l~~~~~~~~----~~~~~ 526 (943)
.+++|++|++++| .+++..+ ..+++ |++|++++|.... .....+++|++|++++|.+... .....
T Consensus 110 ~~~~L~~L~L~~~-~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~ 188 (592)
T 3ogk_B 110 NLRQLKSVHFRRM-IVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELA 188 (592)
T ss_dssp HCTTCCEEEEESC-BCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHH
T ss_pred hCCCCCeEEeecc-EecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHH
Confidence 4677888888776 3432211 11334 7777777776321 1223577888888888865443 22233
Q ss_pred CCCCCccEEEEecccccchhhhhhhhhhhccCCccEEeecCCCCcccchhhhhhHHhhhhhcccccccEEEeecCCCC--
Q 048004 527 LRLPKLEELEIENMKEQTYIWKSHKELLQDICSLKRLTIDSCPKLQSLVAEEEKDQQQQLCELSCRLEYLTLSGCQGL-- 604 (943)
Q Consensus 527 ~~l~~L~~L~l~~~~~~~~i~~~~~~~~~~l~~L~~L~l~~~~~L~~l~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l-- 604 (943)
..+++|+.|+++++.....-.......+..+++|+.|++++|. +..+. .... ..++|++|.++++...
T Consensus 189 ~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-~~~l~-----~~~~----~~~~L~~L~l~~~~~~~~ 258 (592)
T 3ogk_B 189 QHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFE-ILELV-----GFFK----AAANLEEFCGGSLNEDIG 258 (592)
T ss_dssp HHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCB-GGGGH-----HHHH----HCTTCCEEEECBCCCCTT
T ss_pred hcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCcc-HHHHH-----HHHh----hhhHHHhhcccccccccc
Confidence 4567778887777665311111223445667777777777763 22221 1111 1267777777754333
Q ss_pred -CCCCccccCccccceEEeccCCCccccCC-ccCCCCccEEEeccCCCCcccccccccCCCCCCCeEEEeecCCCccccC
Q 048004 605 -VKLPQSSLSLNSLREIEIYKCSSLVSFPE-VALPSKLKKIEIRECDALKSLPEAWMCGTNSSLEILSIQGCHSLTYIAG 682 (943)
Q Consensus 605 -~~l~~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~ 682 (943)
...+..+..+++|+.|+++++ ....+|. ...+++|++|++++|. ++..........+++|++|+++++-.-..++.
T Consensus 259 ~~~~~~~l~~~~~L~~L~l~~~-~~~~l~~~~~~~~~L~~L~Ls~~~-l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~ 336 (592)
T 3ogk_B 259 MPEKYMNLVFPRKLCRLGLSYM-GPNEMPILFPFAAQIRKLDLLYAL-LETEDHCTLIQKCPNLEVLETRNVIGDRGLEV 336 (592)
T ss_dssp CTTSSSCCCCCTTCCEEEETTC-CTTTGGGGGGGGGGCCEEEETTCC-CCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHH
T ss_pred hHHHHHHhhccccccccCcccc-chhHHHHHHhhcCCCcEEecCCCc-CCHHHHHHHHHhCcCCCEEeccCccCHHHHHH
Confidence 233345566677777777764 2233332 3446677777777766 32222111115667777777773321111110
Q ss_pred ccCCCCccEEEeccCCCccccccccccccCCCCCCCeeeeec----------cCCccc--ccccCCCCCCcCeEeecCCC
Q 048004 683 VQLPPSLKRLEIDFCDNLRTLTVEEGIQSSSSSSSSSRSIWT----------CENLKF--LPSGLHNLRQLQEIEIWECE 750 (943)
Q Consensus 683 ~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~~~L~~l~l~~----------~~~l~~--lp~~~~~l~~L~~L~l~~~~ 750 (943)
. ...+++|+.|++.+ |..++. ++.....+++|++|+++.+.
T Consensus 337 ~---------------------------~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~ 389 (592)
T 3ogk_B 337 L---------------------------AQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSD 389 (592)
T ss_dssp H---------------------------HHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESC
T ss_pred H---------------------------HHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCC
Confidence 0 01123344444442 444432 22333457888888886665
Q ss_pred CceecCCCCCC-CCCcceEeecc---cCCCCc------cccccCCCCccceEEecCCCc-hhhhhhhhccccCCCCCcCE
Q 048004 751 NLVSFPQGGLP-CAKLSMLTVYG---CERLKA------LPKGLHNLTNLHSLEIHGNTK-IWKSMIEWGRGFHRFSSLRE 819 (943)
Q Consensus 751 ~~~~~~~~~~~-l~~L~~L~l~~---~~~~~~------~~~~l~~l~~L~~L~l~~n~~-~~~~~~~~~~~~~~l~~L~~ 819 (943)
..+..+..+.. +++|++|++++ |+..+. ++..+.++++|+.|++++|.. +........ ...+++|++
T Consensus 390 l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~--~~~~~~L~~ 467 (592)
T 3ogk_B 390 ITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYI--GQYSPNVRW 467 (592)
T ss_dssp CCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHH--HHSCTTCCE
T ss_pred ccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHH--HHhCccceE
Confidence 54444333333 67888888873 333333 333356788888888877652 222222111 345788888
Q ss_pred EEEeecCCCceecCCCccccCCCCCCCCccceeeccCCCCCcc--cccccccCCCCCeEEEcCCCCCCC
Q 048004 820 LKISRCDDDMVSFPPEDIRLGTTLPLPASLTSLEIGYFPNLER--LSSSIVDLQNLTSLFLYHCPKLKY 886 (943)
Q Consensus 820 L~ls~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~--l~~~~~~l~~L~~L~l~~c~~l~~ 886 (943)
|++++|...-..++... ..+++|++|++++|+ ++. ++.....+++|+.|++++|+ ++.
T Consensus 468 L~L~~n~l~~~~~~~~~-------~~~~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~ls~n~-it~ 527 (592)
T 3ogk_B 468 MLLGYVGESDEGLMEFS-------RGCPNLQKLEMRGCC-FSERAIAAAVTKLPSLRYLWVQGYR-ASM 527 (592)
T ss_dssp EEECSCCSSHHHHHHHH-------TCCTTCCEEEEESCC-CBHHHHHHHHHHCSSCCEEEEESCB-CCT
T ss_pred eeccCCCCCHHHHHHHH-------hcCcccCeeeccCCC-CcHHHHHHHHHhcCccCeeECcCCc-CCH
Confidence 88888632111222111 456888888998887 442 44445678999999999987 443
No 49
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.83 E-value=8.6e-22 Score=231.03 Aligned_cols=161 Identities=13% Similarity=0.042 Sum_probs=82.8
Q ss_pred CCcccEEEEcCCcCeeeeccccCC-CCCccEEEEeccc---ccchhh--hhhhhhhhccCCccEEeecCCCC-cccchhh
Q 048004 505 LPALCKLHIGGCKKVVWRRPLKLR-LPKLEELEIENMK---EQTYIW--KSHKELLQDICSLKRLTIDSCPK-LQSLVAE 577 (943)
Q Consensus 505 l~~L~~L~l~~~~~~~~~~~~~~~-l~~L~~L~l~~~~---~~~~i~--~~~~~~~~~l~~L~~L~l~~~~~-L~~l~~~ 577 (943)
+++|++|+++.+.+.......+.. +++|+.|+++++. .++... ......+..+++|+.|+++.|.. ++.
T Consensus 377 ~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~---- 452 (592)
T 3ogk_B 377 CQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTD---- 452 (592)
T ss_dssp CTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCH----
T ss_pred CccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccH----
Confidence 555666666544444332222222 5566666665322 222110 01122345577777777766643 221
Q ss_pred hhhHHhhhhhcccccccEEEeecCCCCC-CCCccccCccccceEEeccCCCccc--cCC-ccCCCCccEEEeccCCCCcc
Q 048004 578 EEKDQQQQLCELSCRLEYLTLSGCQGLV-KLPQSSLSLNSLREIEIYKCSSLVS--FPE-VALPSKLKKIEIRECDALKS 653 (943)
Q Consensus 578 ~~~~~~~~l~~~~~~L~~L~l~~~~~l~-~l~~~~~~l~~L~~L~l~~~~~l~~--~~~-~~~~~~L~~L~l~~~~~l~~ 653 (943)
.....+...+++|++|++++|.... .++..+..+++|++|++++|+ ++. ++. ...+++|++|++++|+ ++.
T Consensus 453 ---~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~ls~n~-it~ 527 (592)
T 3ogk_B 453 ---LGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCC-FSERAIAAAVTKLPSLRYLWVQGYR-ASM 527 (592)
T ss_dssp ---HHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCC-CBHHHHHHHHHHCSSCCEEEEESCB-CCT
T ss_pred ---HHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCC-CcHHHHHHHHHhcCccCeeECcCCc-CCH
Confidence 1112222334677777777776443 334445667778888888876 332 222 2346777788887776 433
Q ss_pred cccccccCCCCCCCeEEEeec
Q 048004 654 LPEAWMCGTNSSLEILSIQGC 674 (943)
Q Consensus 654 ~~~~~~~~~~~~L~~L~l~~~ 674 (943)
.....+...++.+....+..+
T Consensus 528 ~~~~~l~~~~p~l~~~~~~~~ 548 (592)
T 3ogk_B 528 TGQDLMQMARPYWNIELIPSR 548 (592)
T ss_dssp TCTTGGGGCCTTEEEEEECCC
T ss_pred HHHHHHHHhCCCcEEEEecCc
Confidence 333223345566666555543
No 50
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.83 E-value=1.5e-22 Score=229.43 Aligned_cols=363 Identities=17% Similarity=0.138 Sum_probs=196.1
Q ss_pred CcccEEEEcCCcCeeeeccc-cCCCCCccEEEEecccccchhhhhhhhhhhccCCccEEeecCCCCcccchhhhhhHHhh
Q 048004 506 PALCKLHIGGCKKVVWRRPL-KLRLPKLEELEIENMKEQTYIWKSHKELLQDICSLKRLTIDSCPKLQSLVAEEEKDQQQ 584 (943)
Q Consensus 506 ~~L~~L~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~~i~~~~~~~~~~l~~L~~L~l~~~~~L~~l~~~~~~~~~~ 584 (943)
++|++|++++|.+....... +..+++|+.|++++|......+..-...+..+++|++|+++++. +....... ...
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-l~~~~~~~---l~~ 78 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNE-LGDVGVHC---VLQ 78 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCC-CHHHHHHH---HHH
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCc-CChHHHHH---HHH
Confidence 45566666666654433222 44556666666666654332222223445556777777777653 22211111 111
Q ss_pred hhhcccccccEEEeecCCCCC----CCCccccCccccceEEeccCCCccccC----C--ccCCCCccEEEeccCCCCcc-
Q 048004 585 QLCELSCRLEYLTLSGCQGLV----KLPQSSLSLNSLREIEIYKCSSLVSFP----E--VALPSKLKKIEIRECDALKS- 653 (943)
Q Consensus 585 ~l~~~~~~L~~L~l~~~~~l~----~l~~~~~~l~~L~~L~l~~~~~l~~~~----~--~~~~~~L~~L~l~~~~~l~~- 653 (943)
.+....++|++|++++|.... .++..+..+++|++|++++|..-...+ . ....++|++|++++|.....
T Consensus 79 ~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~ 158 (461)
T 1z7x_W 79 GLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAAS 158 (461)
T ss_dssp TTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGG
T ss_pred HHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHH
Confidence 111111257777777776542 346666777778888887775321111 0 11244678888877643332
Q ss_pred ---cccccccCCCCCCCeEEEeecCCCccccCcc-------CCCCccEEEeccCCCcccccccc-ccccCCCCCCCeeee
Q 048004 654 ---LPEAWMCGTNSSLEILSIQGCHSLTYIAGVQ-------LPPSLKRLEIDFCDNLRTLTVEE-GIQSSSSSSSSSRSI 722 (943)
Q Consensus 654 ---~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~-------~~~~L~~L~l~~c~~L~~l~~~~-~~~~~~~~~L~~l~l 722 (943)
++..+ ..+++|++|++++|. ++...... ..++|+.|++++|. ++...... ...-..+++|+.|++
T Consensus 159 ~~~l~~~l--~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~L 234 (461)
T 1z7x_W 159 CEPLASVL--RAKPDFKELTVSNND-INEAGVRVLCQGLKDSPCQLEALKLESCG-VTSDNCRDLCGIVASKASLRELAL 234 (461)
T ss_dssp HHHHHHHH--HHCTTCCEEECCSSB-CHHHHHHHHHHHHHHSCCCCCEEECTTSC-CBTTHHHHHHHHHHHCTTCCEEEC
T ss_pred HHHHHHHH--hhCCCCCEEECcCCC-cchHHHHHHHHHHhcCCCCceEEEccCCC-CcHHHHHHHHHHHHhCCCccEEec
Confidence 12222 446778888887776 33221111 12357777776652 22211000 000113456677777
Q ss_pred eccCCccc-----c-cccCCCCCCcCeEeecCCCCcee----cCCCCCCCCCcceEeecccCCCCcccccc-----CCCC
Q 048004 723 WTCENLKF-----L-PSGLHNLRQLQEIEIWECENLVS----FPQGGLPCAKLSMLTVYGCERLKALPKGL-----HNLT 787 (943)
Q Consensus 723 ~~~~~l~~-----l-p~~~~~l~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~~~~~~~~~l-----~~l~ 787 (943)
+++. ++. + +..+..+++|++|++++|..... ++..+..+++|++|++++|.+....+..+ ...+
T Consensus 235 s~n~-l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~ 313 (461)
T 1z7x_W 235 GSNK-LGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGC 313 (461)
T ss_dssp CSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTC
T ss_pred cCCc-CChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCc
Confidence 6663 322 2 22234577888888888855432 45555556788888888886643222222 2336
Q ss_pred ccceEEecCCCchhhhhhhhccccCCCCCcCEEEEeecCCCceecCCCccccCCCC-CCCCccceeeccCCCCCc-----
Q 048004 788 NLHSLEIHGNTKIWKSMIEWGRGFHRFSSLRELKISRCDDDMVSFPPEDIRLGTTL-PLPASLTSLEIGYFPNLE----- 861 (943)
Q Consensus 788 ~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~~~~~~~~~~~~~-~~l~~L~~L~l~~~~~l~----- 861 (943)
+|++|++++|.........++..+..+++|++|++++| .+.......+. ..+ ...++|++|++++|. ++
T Consensus 314 ~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n--~i~~~~~~~l~--~~l~~~~~~L~~L~L~~n~-i~~~~~~ 388 (461)
T 1z7x_W 314 QLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNN--RLEDAGVRELC--QGLGQPGSVLRVLWLADCD-VSDSSCS 388 (461)
T ss_dssp CCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSS--BCHHHHHHHHH--HHHTSTTCCCCEEECTTSC-CCHHHHH
T ss_pred cceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCC--ccccccHHHHH--HHHcCCCCceEEEECCCCC-CChhhHH
Confidence 78888888887655443344444667788888888886 33221111000 000 125688888888874 44
Q ss_pred ccccccccCCCCCeEEEcCCC
Q 048004 862 RLSSSIVDLQNLTSLFLYHCP 882 (943)
Q Consensus 862 ~l~~~~~~l~~L~~L~l~~c~ 882 (943)
.+|..+..+++|+.|++++|+
T Consensus 389 ~l~~~l~~~~~L~~L~l~~N~ 409 (461)
T 1z7x_W 389 SLAATLLANHSLRELDLSNNC 409 (461)
T ss_dssp HHHHHHHHCCCCCEEECCSSS
T ss_pred HHHHHHHhCCCccEEECCCCC
Confidence 667777778888888888864
No 51
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.82 E-value=1.8e-22 Score=228.92 Aligned_cols=182 Identities=24% Similarity=0.269 Sum_probs=114.1
Q ss_pred ccceEEeccccCc-------cccCCCCCcccEEEEcCCcCeeeecc-----ccCCCCCccEEEEecccccchhhhhhhhh
Q 048004 486 ALEMLVIEGCEEL-------LVSVSSLPALCKLHIGGCKKVVWRRP-----LKLRLPKLEELEIENMKEQTYIWKSHKEL 553 (943)
Q Consensus 486 ~L~~L~l~~~~~l-------~~~~~~l~~L~~L~l~~~~~~~~~~~-----~~~~l~~L~~L~l~~~~~~~~i~~~~~~~ 553 (943)
+|++|++++|... ...+..+++|++|++++|.+...... .....++|++|++++|.........-...
T Consensus 86 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 165 (461)
T 1z7x_W 86 KIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASV 165 (461)
T ss_dssp CCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHH
T ss_pred ceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHH
Confidence 4555555555422 33566788888888888886543222 12335678888888886655433333455
Q ss_pred hhccCCccEEeecCCCCcccchhhhhhHHhhhhhcccccccEEEeecCCCCCC----CCccccCccccceEEeccCCCcc
Q 048004 554 LQDICSLKRLTIDSCPKLQSLVAEEEKDQQQQLCELSCRLEYLTLSGCQGLVK----LPQSSLSLNSLREIEIYKCSSLV 629 (943)
Q Consensus 554 ~~~l~~L~~L~l~~~~~L~~l~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~----l~~~~~~l~~L~~L~l~~~~~l~ 629 (943)
+..+++|++|++++|. ++........ ..+....++|++|++++|..... ++..+..+++|++|++++|. ++
T Consensus 166 l~~~~~L~~L~L~~n~-i~~~~~~~l~---~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-l~ 240 (461)
T 1z7x_W 166 LRAKPDFKELTVSNND-INEAGVRVLC---QGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNK-LG 240 (461)
T ss_dssp HHHCTTCCEEECCSSB-CHHHHHHHHH---HHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSB-CH
T ss_pred HhhCCCCCEEECcCCC-cchHHHHHHH---HHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCc-CC
Confidence 6677889999998875 4332222111 11222235899999999876553 46667778899999999884 33
Q ss_pred cc------CC-ccCCCCccEEEeccCCCCcc-----cccccccCCCCCCCeEEEeecC
Q 048004 630 SF------PE-VALPSKLKKIEIRECDALKS-----LPEAWMCGTNSSLEILSIQGCH 675 (943)
Q Consensus 630 ~~------~~-~~~~~~L~~L~l~~~~~l~~-----~~~~~~~~~~~~L~~L~l~~~~ 675 (943)
.. +. ...+++|++|++++|. ++. ++..+ ..+++|++|++++|.
T Consensus 241 ~~~~~~l~~~~~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l--~~~~~L~~L~Ls~n~ 295 (461)
T 1z7x_W 241 DVGMAELCPGLLHPSSRLRTLWIWECG-ITAKGCGDLCRVL--RAKESLKELSLAGNE 295 (461)
T ss_dssp HHHHHHHHHHHTSTTCCCCEEECTTSC-CCHHHHHHHHHHH--HHCTTCCEEECTTCC
T ss_pred hHHHHHHHHHHhcCCCCceEEECcCCC-CCHHHHHHHHHHH--hhCCCcceEECCCCC
Confidence 32 11 1236788888888874 443 34433 457888888888886
No 52
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.82 E-value=2.2e-20 Score=198.42 Aligned_cols=86 Identities=15% Similarity=0.031 Sum_probs=45.2
Q ss_pred cCCCCCCcCeEeecCCCCceecCCCCCCCCCcceEeecccCCCCccccccCCCCccceEEecCCCchhhhhhhhccccCC
Q 048004 734 GLHNLRQLQEIEIWECENLVSFPQGGLPCAKLSMLTVYGCERLKALPKGLHNLTNLHSLEIHGNTKIWKSMIEWGRGFHR 813 (943)
Q Consensus 734 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~ 813 (943)
.+..++ |++|++++|...+..|..+..+++|++|++++|.+.+.+|. +..+++|++|++++|.... ..+..+..
T Consensus 193 ~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~----~~p~~l~~ 266 (313)
T 1ogq_A 193 TFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYG----TLPQGLTQ 266 (313)
T ss_dssp GGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEE----CCCGGGGG
T ss_pred HHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccC----cCChHHhc
Confidence 344444 66666666655555555555556666666666555444433 4555566666666554321 12223555
Q ss_pred CCCcCEEEEeec
Q 048004 814 FSSLRELKISRC 825 (943)
Q Consensus 814 l~~L~~L~ls~n 825 (943)
+++|++|++++|
T Consensus 267 l~~L~~L~Ls~N 278 (313)
T 1ogq_A 267 LKFLHSLNVSFN 278 (313)
T ss_dssp CTTCCEEECCSS
T ss_pred CcCCCEEECcCC
Confidence 555555665554
No 53
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.81 E-value=5.5e-19 Score=197.99 Aligned_cols=171 Identities=17% Similarity=0.128 Sum_probs=113.7
Q ss_pred cCCCCCCcCeEeecCCCCceecCCCCCCCCCcceEeecccCCCCcccc-ccCCCCccceEEecCCCchhhhhhhhccccC
Q 048004 734 GLHNLRQLQEIEIWECENLVSFPQGGLPCAKLSMLTVYGCERLKALPK-GLHNLTNLHSLEIHGNTKIWKSMIEWGRGFH 812 (943)
Q Consensus 734 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~ 812 (943)
.+..+++|++|++++|......+..+..+++|++|++++|+..+.++. .+.++++|++|++++|..... + .+.
T Consensus 131 ~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-----~-~~~ 204 (440)
T 3zyj_A 131 AFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREI-----P-NLT 204 (440)
T ss_dssp TSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSC-----C-CCT
T ss_pred HhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccc-----c-ccC
Confidence 456677777777777765544444566677777777777666665544 467777777777777754321 1 266
Q ss_pred CCCCcCEEEEeecCCCceecCCCccccCCCCCCCCccceeeccCCCCCccc-ccccccCCCCCeEEEcCCCCCCCCCCCC
Q 048004 813 RFSSLRELKISRCDDDMVSFPPEDIRLGTTLPLPASLTSLEIGYFPNLERL-SSSIVDLQNLTSLFLYHCPKLKYFPEKG 891 (943)
Q Consensus 813 ~l~~L~~L~ls~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l-~~~~~~l~~L~~L~l~~c~~l~~l~~~~ 891 (943)
.+++|++|++++| .+..++.+.+ ..+++|++|++++|. ++.+ +..+.++++|+.|++++| +++.++...
T Consensus 205 ~l~~L~~L~Ls~N--~l~~~~~~~~------~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~ 274 (440)
T 3zyj_A 205 PLIKLDELDLSGN--HLSAIRPGSF------QGLMHLQKLWMIQSQ-IQVIERNAFDNLQSLVEINLAHN-NLTLLPHDL 274 (440)
T ss_dssp TCSSCCEEECTTS--CCCEECTTTT------TTCTTCCEEECTTCC-CCEECTTSSTTCTTCCEEECTTS-CCCCCCTTT
T ss_pred CCcccCEEECCCC--ccCccChhhh------ccCccCCEEECCCCc-eeEEChhhhcCCCCCCEEECCCC-CCCccChhH
Confidence 7777777777776 5555544443 567778888888754 4444 445677888888888885 677777644
Q ss_pred C--CcccceeeecCCcchhhhhcCCCCCCCcccc
Q 048004 892 L--PSSLLELIIYRCPLIAEKCGKDGGQYWDLLT 923 (943)
Q Consensus 892 ~--~~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~ 923 (943)
+ +++|+.|++++||. .|.|+..|.+.|+.
T Consensus 275 ~~~l~~L~~L~L~~Np~---~CdC~l~~l~~~~~ 305 (440)
T 3zyj_A 275 FTPLHHLERIHLHHNPW---NCNCDILWLSWWIK 305 (440)
T ss_dssp TSSCTTCCEEECCSSCE---ECSSTTHHHHHHHH
T ss_pred hccccCCCEEEcCCCCc---cCCCCchHHHHHHH
Confidence 3 57888888888887 57666655444443
No 54
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.80 E-value=1.7e-19 Score=191.82 Aligned_cols=182 Identities=18% Similarity=0.180 Sum_probs=121.4
Q ss_pred ccccCCCCCCcCeEeecCCCCceecC-CCCCCCCCcceEeecccCCCCccccccCCCCccceEEecCCCchhhhhhhhcc
Q 048004 731 LPSGLHNLRQLQEIEIWECENLVSFP-QGGLPCAKLSMLTVYGCERLKALPKGLHNLTNLHSLEIHGNTKIWKSMIEWGR 809 (943)
Q Consensus 731 lp~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~ 809 (943)
+|..+..+++|++|++++|...+..+ ..+..+++|++|++++|.+.+..+..+..+++|++|++++|..... ..+.
T Consensus 93 l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~ 169 (306)
T 2z66_A 93 MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQEN---FLPD 169 (306)
T ss_dssp EEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGG---EECS
T ss_pred ChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccc---cchh
Confidence 34456667788888888775443333 3566778888888888877767777777888888888888864321 1233
Q ss_pred ccCCCCCcCEEEEeecCCCceecCCCccccCCCCCCCCccceeeccCCCCCccccc-ccccCCCCCeEEEcCCCCCCCCC
Q 048004 810 GFHRFSSLRELKISRCDDDMVSFPPEDIRLGTTLPLPASLTSLEIGYFPNLERLSS-SIVDLQNLTSLFLYHCPKLKYFP 888 (943)
Q Consensus 810 ~~~~l~~L~~L~ls~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~-~~~~l~~L~~L~l~~c~~l~~l~ 888 (943)
.+..+++|++|++++| .+..++.+.+ ..+++|++|++++|. ++.++. .+..+++|+.|++++|. ++..+
T Consensus 170 ~~~~l~~L~~L~Ls~n--~l~~~~~~~~------~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~ 239 (306)
T 2z66_A 170 IFTELRNLTFLDLSQC--QLEQLSPTAF------NSLSSLQVLNMSHNN-FFSLDTFPYKCLNSLQVLDYSLNH-IMTSK 239 (306)
T ss_dssp CCTTCTTCCEEECTTS--CCCEECTTTT------TTCTTCCEEECTTSC-CSBCCSGGGTTCTTCCEEECTTSC-CCBCS
T ss_pred HHhhCcCCCEEECCCC--CcCCcCHHHh------cCCCCCCEEECCCCc-cCccChhhccCcccCCEeECCCCC-CcccC
Confidence 4777888888888886 4555544433 567888888888864 555543 56778889999998874 44443
Q ss_pred CCC---CCcccceeeecCCcchhhhhcCCCCCCCccccCcceE
Q 048004 889 EKG---LPSSLLELIIYRCPLIAEKCGKDGGQYWDLLTHIPHV 928 (943)
Q Consensus 889 ~~~---~~~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~~ 928 (943)
... ++++|+.|++++|+. .|.+...+...|+...+.+
T Consensus 240 ~~~~~~~~~~L~~L~L~~N~~---~~~c~~~~~~~~l~~~~~~ 279 (306)
T 2z66_A 240 KQELQHFPSSLAFLNLTQNDF---ACTCEHQSFLQWIKDQRQL 279 (306)
T ss_dssp SSSCCCCCTTCCEEECTTCCE---ECSGGGHHHHHHHHHTGGG
T ss_pred HHHHHhhhccCCEEEccCCCe---ecccChHHHHHHHHhhhhh
Confidence 322 246899999999987 4555555545555544443
No 55
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.80 E-value=8.4e-19 Score=197.23 Aligned_cols=165 Identities=19% Similarity=0.117 Sum_probs=87.0
Q ss_pred CCCCCCcCeEeecCCCCceecCCCCCCCCCcceEeecccCCCCcccc-ccCCCCccceEEecCCCchhhhhhhhccccCC
Q 048004 735 LHNLRQLQEIEIWECENLVSFPQGGLPCAKLSMLTVYGCERLKALPK-GLHNLTNLHSLEIHGNTKIWKSMIEWGRGFHR 813 (943)
Q Consensus 735 ~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~ 813 (943)
+.++++|++|++++|......+..+..+++|++|++++|+.++.++. .+.++++|++|++++|..... ..+..
T Consensus 143 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~------~~~~~ 216 (452)
T 3zyi_A 143 FEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM------PNLTP 216 (452)
T ss_dssp SSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC------CCCTT
T ss_pred hcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc------ccccc
Confidence 44455555555555544333333444555555555555554444433 345555555666555543221 12455
Q ss_pred CCCcCEEEEeecCCCceecCCCccccCCCCCCCCccceeeccCCCCCcccccccccCCCCCeEEEcCCCCCCCCCCCCC-
Q 048004 814 FSSLRELKISRCDDDMVSFPPEDIRLGTTLPLPASLTSLEIGYFPNLERLSSSIVDLQNLTSLFLYHCPKLKYFPEKGL- 892 (943)
Q Consensus 814 l~~L~~L~ls~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~- 892 (943)
+++|++|++++| .+..++.+.+ ..+++|++|++++|......+..+.++++|+.|++++| +++.++...+
T Consensus 217 l~~L~~L~Ls~N--~l~~~~~~~~------~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~ 287 (452)
T 3zyi_A 217 LVGLEELEMSGN--HFPEIRPGSF------HGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHN-NLSSLPHDLFT 287 (452)
T ss_dssp CTTCCEEECTTS--CCSEECGGGG------TTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCSCCCTTSST
T ss_pred cccccEEECcCC--cCcccCcccc------cCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCC-cCCccChHHhc
Confidence 556666666654 3334433333 45556666666664332223444566666677777664 4566655433
Q ss_pred -CcccceeeecCCcchhhhhcCCCCC
Q 048004 893 -PSSLLELIIYRCPLIAEKCGKDGGQ 917 (943)
Q Consensus 893 -~~~L~~L~i~~c~~l~~~~~~~~~~ 917 (943)
+++|+.|++++||. .|.|+..|
T Consensus 288 ~l~~L~~L~L~~Np~---~CdC~~~~ 310 (452)
T 3zyi_A 288 PLRYLVELHLHHNPW---NCDCDILW 310 (452)
T ss_dssp TCTTCCEEECCSSCE---ECSTTTHH
T ss_pred cccCCCEEEccCCCc---CCCCCchH
Confidence 46777777777775 45554443
No 56
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.80 E-value=5e-19 Score=192.19 Aligned_cols=118 Identities=13% Similarity=0.075 Sum_probs=63.2
Q ss_pred ccCCCCCCcCeEeecCCCCceecCCCC-CCCCCcceEeecccCCCCcccccc---CCCCccceEEecCCCchhhhhhhhc
Q 048004 733 SGLHNLRQLQEIEIWECENLVSFPQGG-LPCAKLSMLTVYGCERLKALPKGL---HNLTNLHSLEIHGNTKIWKSMIEWG 808 (943)
Q Consensus 733 ~~~~~l~~L~~L~l~~~~~~~~~~~~~-~~l~~L~~L~l~~~~~~~~~~~~l---~~l~~L~~L~l~~n~~~~~~~~~~~ 808 (943)
..+.++++|++|++++|.. +.+|..+ ..+++|++|++++|.+.+..+..+ ...+.++.++++++.........++
T Consensus 192 ~~l~~l~~L~~L~l~~n~l-~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~ 270 (353)
T 2z80_A 192 KSLKSIQNVSHLILHMKQH-ILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVM 270 (353)
T ss_dssp TTTTTCSEEEEEEEECSCS-TTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHH
T ss_pred HHHhccccCCeecCCCCcc-ccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhH
Confidence 3455556666666666643 3333222 234566666666665544332222 2345566666666655444433444
Q ss_pred cccCCCCCcCEEEEeecCCCceecCCCccccCCCCCCCCccceeeccCCCC
Q 048004 809 RGFHRFSSLRELKISRCDDDMVSFPPEDIRLGTTLPLPASLTSLEIGYFPN 859 (943)
Q Consensus 809 ~~~~~l~~L~~L~ls~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 859 (943)
..+..+++|++|++++| .+..+|.+.+ ..+++|++|++++|+.
T Consensus 271 ~~l~~l~~L~~L~Ls~N--~l~~i~~~~~------~~l~~L~~L~L~~N~~ 313 (353)
T 2z80_A 271 KLLNQISGLLELEFSRN--QLKSVPDGIF------DRLTSLQKIWLHTNPW 313 (353)
T ss_dssp HHHHTCTTCCEEECCSS--CCCCCCTTTT------TTCTTCCEEECCSSCB
T ss_pred HHHhcccCCCEEECCCC--CCCccCHHHH------hcCCCCCEEEeeCCCc
Confidence 44666777777777765 4445555443 3556666666666543
No 57
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.79 E-value=3.3e-21 Score=226.24 Aligned_cols=87 Identities=16% Similarity=0.108 Sum_probs=41.5
Q ss_pred CCCCCCcCeEeecCCCCceecCCCCCC-CCCcceEeecccCCCCcccccc-CCCCccceEEecCCCchhhhhhhhccccC
Q 048004 735 LHNLRQLQEIEIWECENLVSFPQGGLP-CAKLSMLTVYGCERLKALPKGL-HNLTNLHSLEIHGNTKIWKSMIEWGRGFH 812 (943)
Q Consensus 735 ~~~l~~L~~L~l~~~~~~~~~~~~~~~-l~~L~~L~l~~~~~~~~~~~~l-~~l~~L~~L~l~~n~~~~~~~~~~~~~~~ 812 (943)
+.++++|+.|++++ ......+..+.. +++|++|++++|.+.+..+..+ .++++|++|++++|+........+ +.
T Consensus 428 ~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~---~~ 503 (594)
T 2p1m_B 428 VEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLAN---AS 503 (594)
T ss_dssp HHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHT---GG
T ss_pred HhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHH---HH
Confidence 34556666666655 222221111221 4566666666665433222222 445666666666665422211111 33
Q ss_pred CCCCcCEEEEeec
Q 048004 813 RFSSLRELKISRC 825 (943)
Q Consensus 813 ~l~~L~~L~ls~n 825 (943)
.+++|++|++++|
T Consensus 504 ~l~~L~~L~l~~~ 516 (594)
T 2p1m_B 504 KLETMRSLWMSSC 516 (594)
T ss_dssp GGGGSSEEEEESS
T ss_pred hCCCCCEEeeeCC
Confidence 4556666666654
No 58
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.79 E-value=1e-18 Score=189.77 Aligned_cols=251 Identities=17% Similarity=0.168 Sum_probs=152.7
Q ss_pred ccccEEEeecCCCCCCCCccccCccccceEEeccCCCccccC--CccCCCCccEEEeccCCCCcccccccccCCCCCCCe
Q 048004 591 CRLEYLTLSGCQGLVKLPQSSLSLNSLREIEIYKCSSLVSFP--EVALPSKLKKIEIRECDALKSLPEAWMCGTNSSLEI 668 (943)
Q Consensus 591 ~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~~--~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~ 668 (943)
++|++|++++|......+..+..+++|++|++++|. ++.++ .+..+++|++|++++|. ++.++...+ ..+++|++
T Consensus 52 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~-~~l~~L~~ 128 (353)
T 2z80_A 52 EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNG-INTIEEDSFSSLGSLEHLDLSYNY-LSNLSSSWF-KPLSSLTF 128 (353)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECCSSC-CSSCCHHHH-TTCTTCSE
T ss_pred ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCc-cCccCHhhcCCCCCCCEEECCCCc-CCcCCHhHh-CCCccCCE
Confidence 356666666655443333355666666666666663 33332 24445666666666643 334444322 45566666
Q ss_pred EEEeecCCCccccCccCCCCccEEEeccCCCccccccccccccCCCCCCCeeeeeccCCcccccc--cCCCCCCcCeEee
Q 048004 669 LSIQGCHSLTYIAGVQLPPSLKRLEIDFCDNLRTLTVEEGIQSSSSSSSSSRSIWTCENLKFLPS--GLHNLRQLQEIEI 746 (943)
Q Consensus 669 L~l~~~~~l~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~~~L~~l~l~~~~~l~~lp~--~~~~l~~L~~L~l 746 (943)
|++++|.. + .+|. .+.++++|++|++
T Consensus 129 L~L~~n~l-~---------------------------------------------------~l~~~~~~~~l~~L~~L~l 156 (353)
T 2z80_A 129 LNLLGNPY-K---------------------------------------------------TLGETSLFSHLTKLQILRV 156 (353)
T ss_dssp EECTTCCC-S---------------------------------------------------SSCSSCSCTTCTTCCEEEE
T ss_pred EECCCCCC-c---------------------------------------------------ccCchhhhccCCCCcEEEC
Confidence 66665542 1 1222 4566777888888
Q ss_pred cCCCCceec-CCCCCCCCCcceEeecccCCCCccccccCCCCccceEEecCCCchhhhhhhhccccCCCCCcCEEEEeec
Q 048004 747 WECENLVSF-PQGGLPCAKLSMLTVYGCERLKALPKGLHNLTNLHSLEIHGNTKIWKSMIEWGRGFHRFSSLRELKISRC 825 (943)
Q Consensus 747 ~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~ls~n 825 (943)
++|..++.+ +..+..+++|++|++++|.+.+..|..+..+++|++|++++|..... +... +..+++|++|++++|
T Consensus 157 ~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~--~~~~--~~~~~~L~~L~L~~n 232 (353)
T 2z80_A 157 GNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILL--LEIF--VDVTSSVECLELRDT 232 (353)
T ss_dssp EESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTH--HHHH--HHHTTTEEEEEEESC
T ss_pred CCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccc--hhhh--hhhcccccEEECCCC
Confidence 777544444 44566777888888888777666677777788888888888764322 1111 445678888888876
Q ss_pred CCCceecCCCccccCCCCCCCCccceeeccCCCC----CcccccccccCCCCCeEEEcCCCCCCCCCCCC--CCccccee
Q 048004 826 DDDMVSFPPEDIRLGTTLPLPASLTSLEIGYFPN----LERLSSSIVDLQNLTSLFLYHCPKLKYFPEKG--LPSSLLEL 899 (943)
Q Consensus 826 ~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~----l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~--~~~~L~~L 899 (943)
.+..++...+. .....+.++.++++++.. +..+|..+..+++|+.|++++| +++.+|... -+++|++|
T Consensus 233 --~l~~~~~~~l~---~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L 306 (353)
T 2z80_A 233 --DLDTFHFSELS---TGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRN-QLKSVPDGIFDRLTSLQKI 306 (353)
T ss_dssp --BCTTCCCC---------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEE
T ss_pred --ccccccccccc---cccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCC-CCCccCHHHHhcCCCCCEE
Confidence 33333322111 112345666777766532 2246777888999999999986 677888753 36899999
Q ss_pred eecCCcc
Q 048004 900 IIYRCPL 906 (943)
Q Consensus 900 ~i~~c~~ 906 (943)
++++||.
T Consensus 307 ~L~~N~~ 313 (353)
T 2z80_A 307 WLHTNPW 313 (353)
T ss_dssp ECCSSCB
T ss_pred EeeCCCc
Confidence 9999986
No 59
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.78 E-value=3.3e-18 Score=196.64 Aligned_cols=78 Identities=18% Similarity=0.191 Sum_probs=56.9
Q ss_pred cccEEEecCccccccCccccCCCcccEEecCCCCCcccchhHhhcccCcEEecCCCcchhhchHhhcccccccccccCCC
Q 048004 178 RLRAFSLRGYYIFELPDSVGDLRYLRYLNLCGTKIRTLPESVNKLYNLHSLLLEDCDRLKKLCADMGNLAKLHHLKNSNT 257 (943)
Q Consensus 178 ~L~~L~L~~~~i~~lp~~~~~L~~L~~L~L~~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~~~~L~~L~~L~l~~~ 257 (943)
++++|++++|.++.+|..+. ++|++|+|++|.|+.+|. .+++|++|++++| .+..+|. .+++|++|++++|
T Consensus 41 ~l~~L~ls~n~L~~lp~~l~--~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N-~l~~lp~---~l~~L~~L~Ls~N 111 (622)
T 3g06_A 41 GNAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLTSLPA---LPPELRTLEVSGN-QLTSLPV---LPPGLLELSIFSN 111 (622)
T ss_dssp CCCEEECCSSCCSCCCSCCC--TTCSEEEECSCCCSCCCC---CCTTCCEEEECSC-CCSCCCC---CCTTCCEEEECSC
T ss_pred CCcEEEecCCCcCccChhhC--CCCcEEEecCCCCCCCCC---cCCCCCEEEcCCC-cCCcCCC---CCCCCCEEECcCC
Confidence 46777888888777777665 678888888888877776 5677888888774 4566664 6677778888777
Q ss_pred CccccCCc
Q 048004 258 KSLEEMPV 265 (943)
Q Consensus 258 ~~~~~~p~ 265 (943)
. +..+|.
T Consensus 112 ~-l~~l~~ 118 (622)
T 3g06_A 112 P-LTHLPA 118 (622)
T ss_dssp C-CCCCCC
T ss_pred c-CCCCCC
Confidence 6 555554
No 60
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.78 E-value=9e-19 Score=183.90 Aligned_cols=173 Identities=20% Similarity=0.243 Sum_probs=84.4
Q ss_pred CCCCCCcCeEeecCCCCceec-CCCCCCCCCcceEeecccCCCCccccccCCCCccceEEecCCCchhhhhhhhccccCC
Q 048004 735 LHNLRQLQEIEIWECENLVSF-PQGGLPCAKLSMLTVYGCERLKALPKGLHNLTNLHSLEIHGNTKIWKSMIEWGRGFHR 813 (943)
Q Consensus 735 ~~~l~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~ 813 (943)
+.++++|++|++++|..++.+ |..+..+++|++|++++|.+.+..|..+..+++|++|++++|...... +..+..
T Consensus 76 ~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~----~~~~~~ 151 (285)
T 1ozn_A 76 FTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALP----DDTFRD 151 (285)
T ss_dssp TTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC----TTTTTT
T ss_pred cCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccC----HhHhcc
Confidence 444455555555555423333 334444555555555555554444444555555555555555432211 011445
Q ss_pred CCCcCEEEEeecCCCceecCCCccccCCCCCCCCccceeeccCCCCCcccccccccCCCCCeEEEcCCCCCCCCCCC--C
Q 048004 814 FSSLRELKISRCDDDMVSFPPEDIRLGTTLPLPASLTSLEIGYFPNLERLSSSIVDLQNLTSLFLYHCPKLKYFPEK--G 891 (943)
Q Consensus 814 l~~L~~L~ls~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~--~ 891 (943)
+++|++|++++| .+..++.+.+ ..+++|++|++++|......|..+..+++|+.|++++| .++.++.. .
T Consensus 152 l~~L~~L~l~~n--~l~~~~~~~~------~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~ 222 (285)
T 1ozn_A 152 LGNLTHLFLHGN--RISSVPERAF------RGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFAN-NLSALPTEALA 222 (285)
T ss_dssp CTTCCEEECCSS--CCCEECTTTT------TTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCSCCCHHHHT
T ss_pred CCCccEEECCCC--cccccCHHHh------cCccccCEEECCCCcccccCHhHccCcccccEeeCCCC-cCCcCCHHHcc
Confidence 555555555554 3444444332 34555566666554332233445556666666666664 34444432 1
Q ss_pred CCcccceeeecCCcchhhhhcCCCCCCCcccc
Q 048004 892 LPSSLLELIIYRCPLIAEKCGKDGGQYWDLLT 923 (943)
Q Consensus 892 ~~~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~ 923 (943)
-+++|+.|++++||. .|.+...+.|.|+.
T Consensus 223 ~l~~L~~L~l~~N~~---~c~~~~~~~~~~l~ 251 (285)
T 1ozn_A 223 PLRALQYLRLNDNPW---VCDCRARPLWAWLQ 251 (285)
T ss_dssp TCTTCCEEECCSSCE---ECSGGGHHHHHHHH
T ss_pred cCcccCEEeccCCCc---cCCCCcHHHHHHHH
Confidence 245666666666665 34444334444433
No 61
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.78 E-value=1.2e-17 Score=187.17 Aligned_cols=227 Identities=16% Similarity=0.141 Sum_probs=136.3
Q ss_pred CcccEEEEcCCcCeeeeccccCCCCCccEEEEecccccchhhhhhhhhhhccCCccEEeecCCCCcccchhhhhhHHhhh
Q 048004 506 PALCKLHIGGCKKVVWRRPLKLRLPKLEELEIENMKEQTYIWKSHKELLQDICSLKRLTIDSCPKLQSLVAEEEKDQQQQ 585 (943)
Q Consensus 506 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~i~~~~~~~~~~l~~L~~L~l~~~~~L~~l~~~~~~~~~~~ 585 (943)
++++.|++++|.+..+....+..+++|+.|++++|.... .....+..+
T Consensus 64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~----i~~~~~~~l---------------------------- 111 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRT----IEIGAFNGL---------------------------- 111 (440)
T ss_dssp TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCE----ECGGGGTTC----------------------------
T ss_pred CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCc----cChhhccCC----------------------------
Confidence 456667777777766666666666777777776664322 112222333
Q ss_pred hhcccccccEEEeecCCCCCCCCccccCccccceEEeccCCCccccCC--ccCCCCccEEEeccCCCCcccccccccCCC
Q 048004 586 LCELSCRLEYLTLSGCQGLVKLPQSSLSLNSLREIEIYKCSSLVSFPE--VALPSKLKKIEIRECDALKSLPEAWMCGTN 663 (943)
Q Consensus 586 l~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~ 663 (943)
++|++|++++|......+..+..+++|++|++++|. ++.++. +..+++|++|++++|+.++.++...+ ..+
T Consensus 112 -----~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~-~~l 184 (440)
T 3zyj_A 112 -----ANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNP-IESIPSYAFNRIPSLRRLDLGELKRLSYISEGAF-EGL 184 (440)
T ss_dssp -----SSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCC-CCEECTTTTTTCTTCCEEECCCCTTCCEECTTTT-TTC
T ss_pred -----ccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCc-ccccCHHHhhhCcccCEeCCCCCCCcceeCcchh-hcc
Confidence 344444555444333333356666777777777663 344442 44566777777777666666665544 566
Q ss_pred CCCCeEEEeecCCCccccCccCCCCccEEEeccCCCccccccccccccCCCCCCCeeeeeccCCccc-ccccCCCCCCcC
Q 048004 664 SSLEILSIQGCHSLTYIAGVQLPPSLKRLEIDFCDNLRTLTVEEGIQSSSSSSSSSRSIWTCENLKF-LPSGLHNLRQLQ 742 (943)
Q Consensus 664 ~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~~~L~~l~l~~~~~l~~-lp~~~~~l~~L~ 742 (943)
++|++|++++|. ++.++.....++|+.|+++ ++ .++. .|..+.++++|+
T Consensus 185 ~~L~~L~L~~n~-l~~~~~~~~l~~L~~L~Ls----------------------------~N-~l~~~~~~~~~~l~~L~ 234 (440)
T 3zyj_A 185 SNLRYLNLAMCN-LREIPNLTPLIKLDELDLS----------------------------GN-HLSAIRPGSFQGLMHLQ 234 (440)
T ss_dssp SSCCEEECTTSC-CSSCCCCTTCSSCCEEECT----------------------------TS-CCCEECTTTTTTCTTCC
T ss_pred cccCeecCCCCc-CccccccCCCcccCEEECC----------------------------CC-ccCccChhhhccCccCC
Confidence 777777777765 3333322112222222222 22 1122 255677788888
Q ss_pred eEeecCCCCceecCCCCCCCCCcceEeecccCCCCccccccCCCCccceEEecCCCchh
Q 048004 743 EIEIWECENLVSFPQGGLPCAKLSMLTVYGCERLKALPKGLHNLTNLHSLEIHGNTKIW 801 (943)
Q Consensus 743 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~ 801 (943)
+|++++|...+..+..+..+++|++|+|++|.+.+..+..+..+++|+.|++++|+...
T Consensus 235 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~C 293 (440)
T 3zyj_A 235 KLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNC 293 (440)
T ss_dssp EEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEEC
T ss_pred EEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccC
Confidence 88888887776667677778888888888887766666667778888888888887543
No 62
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.77 E-value=1.7e-18 Score=183.90 Aligned_cols=137 Identities=21% Similarity=0.168 Sum_probs=88.6
Q ss_pred cCCCCCCcCeEeecCCCCceecCCCCCCCCCcceEeecccCCCC-ccccccCCCCccceEEecCCCchhhhhhhhccccC
Q 048004 734 GLHNLRQLQEIEIWECENLVSFPQGGLPCAKLSMLTVYGCERLK-ALPKGLHNLTNLHSLEIHGNTKIWKSMIEWGRGFH 812 (943)
Q Consensus 734 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~ 812 (943)
.+..+++|++|++++|...+..+..+..+++|++|++++|.+.+ .+|..+..+++|++|++++|...... +..+.
T Consensus 121 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~----~~~~~ 196 (306)
T 2z66_A 121 VFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLS----PTAFN 196 (306)
T ss_dssp TTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEEC----TTTTT
T ss_pred hhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcC----HHHhc
Confidence 45566777777777776666666666667777777777776654 45666777777777777777543321 12366
Q ss_pred CCCCcCEEEEeecCCCceecCCCccccCCCCCCCCccceeeccCCCCCcccccccccCC-CCCeEEEcCCC
Q 048004 813 RFSSLRELKISRCDDDMVSFPPEDIRLGTTLPLPASLTSLEIGYFPNLERLSSSIVDLQ-NLTSLFLYHCP 882 (943)
Q Consensus 813 ~l~~L~~L~ls~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~l~-~L~~L~l~~c~ 882 (943)
.+++|++|++++| .+..++...+ ..+++|++|++++|...+..|..+..++ +|+.|++++++
T Consensus 197 ~l~~L~~L~L~~N--~l~~~~~~~~------~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 197 SLSSLQVLNMSHN--NFFSLDTFPY------KCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQND 259 (306)
T ss_dssp TCTTCCEEECTTS--CCSBCCSGGG------TTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCC
T ss_pred CCCCCCEEECCCC--ccCccChhhc------cCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCC
Confidence 6777777777776 4445554333 4567777777777655555555666664 78888887765
No 63
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.77 E-value=2.6e-17 Score=189.19 Aligned_cols=235 Identities=29% Similarity=0.333 Sum_probs=106.6
Q ss_pred ccccEEEeecCCCCCCCCccccCccccceEEeccCCCccccCCccCCCCccEEEeccCCCCcccccccccCCCCCCCeEE
Q 048004 591 CRLEYLTLSGCQGLVKLPQSSLSLNSLREIEIYKCSSLVSFPEVALPSKLKKIEIRECDALKSLPEAWMCGTNSSLEILS 670 (943)
Q Consensus 591 ~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~ 670 (943)
++|+.|++++|.. +.+|. .+++|++|++++|. ++.+|. .+++|++|++++| .++.+|. .+++|+.|+
T Consensus 61 ~~L~~L~L~~N~l-~~lp~---~l~~L~~L~Ls~N~-l~~lp~--~l~~L~~L~Ls~N-~l~~l~~-----~l~~L~~L~ 127 (622)
T 3g06_A 61 AHITTLVIPDNNL-TSLPA---LPPELRTLEVSGNQ-LTSLPV--LPPGLLELSIFSN-PLTHLPA-----LPSGLCKLW 127 (622)
T ss_dssp TTCSEEEECSCCC-SCCCC---CCTTCCEEEECSCC-CSCCCC--CCTTCCEEEECSC-CCCCCCC-----CCTTCCEEE
T ss_pred CCCcEEEecCCCC-CCCCC---cCCCCCEEEcCCCc-CCcCCC--CCCCCCEEECcCC-cCCCCCC-----CCCCcCEEE
Confidence 4556666665543 23443 34556666666553 444444 4555666666553 2333432 235555666
Q ss_pred EeecCCCccccCccCCCCccEEEeccCCCccccccccccccCCCCCCCeeeeeccCCcccccccCCCCCCcCeEeecCCC
Q 048004 671 IQGCHSLTYIAGVQLPPSLKRLEIDFCDNLRTLTVEEGIQSSSSSSSSSRSIWTCENLKFLPSGLHNLRQLQEIEIWECE 750 (943)
Q Consensus 671 l~~~~~l~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~~~L~~l~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~ 750 (943)
+++|. ++.++. .+++|+.|++++| +++.++ ..+.+|+.|++.++ .++.+| ..+++|+.|++++|.
T Consensus 128 L~~N~-l~~lp~--~l~~L~~L~Ls~N-~l~~l~-------~~~~~L~~L~L~~N-~l~~l~---~~~~~L~~L~Ls~N~ 192 (622)
T 3g06_A 128 IFGNQ-LTSLPV--LPPGLQELSVSDN-QLASLP-------ALPSELCKLWAYNN-QLTSLP---MLPSGLQELSVSDNQ 192 (622)
T ss_dssp CCSSC-CSCCCC--CCTTCCEEECCSS-CCSCCC-------CCCTTCCEEECCSS-CCSCCC---CCCTTCCEEECCSSC
T ss_pred CCCCC-CCcCCC--CCCCCCEEECcCC-cCCCcC-------CccCCCCEEECCCC-CCCCCc---ccCCCCcEEECCCCC
Confidence 65554 333332 1244555555543 222221 12344555555443 233344 224455555555543
Q ss_pred CceecCCCCCCCCCcceEeecccCCCCccccccCCCCccceEEecCCCchhhhhhhhccccCCCCCcCEEEEeecCCCce
Q 048004 751 NLVSFPQGGLPCAKLSMLTVYGCERLKALPKGLHNLTNLHSLEIHGNTKIWKSMIEWGRGFHRFSSLRELKISRCDDDMV 830 (943)
Q Consensus 751 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~ls~n~~~~~ 830 (943)
.. .+|.. +++|+.|++++|.+. .+|. .+++|+.|++++|.... ++ ..+++|++|++++| .+.
T Consensus 193 l~-~l~~~---~~~L~~L~L~~N~l~-~l~~---~~~~L~~L~Ls~N~L~~-----lp---~~l~~L~~L~Ls~N--~L~ 254 (622)
T 3g06_A 193 LA-SLPTL---PSELYKLWAYNNRLT-SLPA---LPSGLKELIVSGNRLTS-----LP---VLPSELKELMVSGN--RLT 254 (622)
T ss_dssp CS-CCCCC---CTTCCEEECCSSCCS-SCCC---CCTTCCEEECCSSCCSC-----CC---CCCTTCCEEECCSS--CCS
T ss_pred CC-CCCCc---cchhhEEECcCCccc-ccCC---CCCCCCEEEccCCccCc-----CC---CCCCcCcEEECCCC--CCC
Confidence 22 23321 235555555554432 2332 12445555555553221 11 22345555555554 333
Q ss_pred ecCCCccccCCCCCCCCccceeeccCCCCCcccccccccCCCCCeEEEcCCC
Q 048004 831 SFPPEDIRLGTTLPLPASLTSLEIGYFPNLERLSSSIVDLQNLTSLFLYHCP 882 (943)
Q Consensus 831 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~ 882 (943)
.+|. .+++|++|++++| .++.+|..+.++++|+.|++++|+
T Consensus 255 ~lp~----------~~~~L~~L~Ls~N-~L~~lp~~l~~l~~L~~L~L~~N~ 295 (622)
T 3g06_A 255 SLPM----------LPSGLLSLSVYRN-QLTRLPESLIHLSSETTVNLEGNP 295 (622)
T ss_dssp CCCC----------CCTTCCEEECCSS-CCCSCCGGGGGSCTTCEEECCSCC
T ss_pred cCCc----------ccccCcEEeCCCC-CCCcCCHHHhhccccCEEEecCCC
Confidence 4442 2345555555553 344555555555555555555543
No 64
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.77 E-value=8.5e-20 Score=214.22 Aligned_cols=229 Identities=15% Similarity=0.197 Sum_probs=141.1
Q ss_pred CCCccceeecccccccccccccC--C--------cccccCCCcccEEecccCcccccCC----CCCCCccceEEeccccC
Q 048004 432 DPPCLETLRFENMREWEDWIPHG--S--------GQRVEGFPKLRELHILRCSKLKGTF----PEHLPALEMLVIEGCEE 497 (943)
Q Consensus 432 ~~~~L~~L~l~~~~~l~~~~~~~--~--------~~~~~~~~~L~~L~l~~c~~l~~~~----p~~l~~L~~L~l~~~~~ 497 (943)
.|++|+.|.+.+++......... . ......+++|++|++++|. +++.. ...+++|++|++.+|..
T Consensus 64 ~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~-~~~~~~~~l~~~~~~L~~L~L~~~~~ 142 (594)
T 2p1m_B 64 RFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMV-VTDDCLELIAKSFKNFKVLVLSSCEG 142 (594)
T ss_dssp HCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCB-CCHHHHHHHHHHCTTCCEEEEESCEE
T ss_pred hCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcE-EcHHHHHHHHHhCCCCcEEeCCCcCC
Confidence 38899999999876544321100 0 0012357899999999874 44322 23578999999998854
Q ss_pred cc-----ccCCCCCcccEEEEcCCcCeeeecc----ccCCCCCccEEEEecccccchhh-hhhhhhhhccCCccEEeecC
Q 048004 498 LL-----VSVSSLPALCKLHIGGCKKVVWRRP----LKLRLPKLEELEIENMKEQTYIW-KSHKELLQDICSLKRLTIDS 567 (943)
Q Consensus 498 l~-----~~~~~l~~L~~L~l~~~~~~~~~~~----~~~~l~~L~~L~l~~~~~~~~i~-~~~~~~~~~l~~L~~L~l~~ 567 (943)
+. .....+++|++|++++|.+...... ....+++|+.|++++|. ..+. .........+++|+.|++++
T Consensus 143 ~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~--~~~~~~~l~~l~~~~~~L~~L~L~~ 220 (594)
T 2p1m_B 143 FSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLA--SEVSFSALERLVTRCPNLKSLKLNR 220 (594)
T ss_dssp EEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCC--SCCCHHHHHHHHHHCTTCCEEECCT
T ss_pred CCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccC--CcCCHHHHHHHHHhCCCCcEEecCC
Confidence 32 2334688999999999986553332 23367789999998886 1111 11223345678999999998
Q ss_pred CCCcccchhhhhhHHhhhhhcccccccEEEeecCCC------CCCCCccccCccccceE-EeccCCCccccCCc-cCCCC
Q 048004 568 CPKLQSLVAEEEKDQQQQLCELSCRLEYLTLSGCQG------LVKLPQSSLSLNSLREI-EIYKCSSLVSFPEV-ALPSK 639 (943)
Q Consensus 568 ~~~L~~l~~~~~~~~~~~l~~~~~~L~~L~l~~~~~------l~~l~~~~~~l~~L~~L-~l~~~~~l~~~~~~-~~~~~ 639 (943)
|..++.+.. .....++|++|.+.++.. ...++..+.++++|+.| .+.+. ....++.. ..+++
T Consensus 221 ~~~~~~l~~---------~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~-~~~~l~~~~~~~~~ 290 (594)
T 2p1m_B 221 AVPLEKLAT---------LLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDA-VPAYLPAVYSVCSR 290 (594)
T ss_dssp TSCHHHHHH---------HHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTC-CGGGGGGGHHHHTT
T ss_pred CCcHHHHHH---------HHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCccc-chhhHHHHHHhhCC
Confidence 866554211 111236888888877643 11233456677888877 33332 11223322 24678
Q ss_pred ccEEEeccCCCCcccccccccCCCCCCCeEEEeec
Q 048004 640 LKKIEIRECDALKSLPEAWMCGTNSSLEILSIQGC 674 (943)
Q Consensus 640 L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~ 674 (943)
|++|++++|. ++......+...+++|++|++++|
T Consensus 291 L~~L~L~~~~-l~~~~l~~~~~~~~~L~~L~l~~~ 324 (594)
T 2p1m_B 291 LTTLNLSYAT-VQSYDLVKLLCQCPKLQRLWVLDY 324 (594)
T ss_dssp CCEEECTTCC-CCHHHHHHHHTTCTTCCEEEEEGG
T ss_pred CCEEEccCCC-CCHHHHHHHHhcCCCcCEEeCcCc
Confidence 9999998887 443222211257788999999887
No 65
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.77 E-value=1.8e-19 Score=192.13 Aligned_cols=239 Identities=11% Similarity=0.047 Sum_probs=121.7
Q ss_pred ccccccEEEeecCCCCCCCCccccCccccceEEeccCCCccccCCccCCCCccEEEeccCCCCcccccccccCCCCCCCe
Q 048004 589 LSCRLEYLTLSGCQGLVKLPQSSLSLNSLREIEIYKCSSLVSFPEVALPSKLKKIEIRECDALKSLPEAWMCGTNSSLEI 668 (943)
Q Consensus 589 ~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~ 668 (943)
.+++|++|++++|......|..+..+++|++|++++|... ..+.+..+++|++|++++|. ++.++ ..++|++
T Consensus 32 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~l~~L~~L~Ls~n~-l~~l~------~~~~L~~ 103 (317)
T 3o53_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLY-ETLDLESLSTLRTLDLNNNY-VQELL------VGPSIET 103 (317)
T ss_dssp TGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCE-EEEEETTCTTCCEEECCSSE-EEEEE------ECTTCCE
T ss_pred cCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCC-cchhhhhcCCCCEEECcCCc-ccccc------CCCCcCE
Confidence 3468888888888776666677888888899988888543 33346667788888888754 33333 2367777
Q ss_pred EEEeecCCCccccCccCCCCccEEEeccCCCccccccccccccCCCCCCCeeeeeccCCcccc-cccCCCCCCcCeEeec
Q 048004 669 LSIQGCHSLTYIAGVQLPPSLKRLEIDFCDNLRTLTVEEGIQSSSSSSSSSRSIWTCENLKFL-PSGLHNLRQLQEIEIW 747 (943)
Q Consensus 669 L~l~~~~~l~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~~~L~~l~l~~~~~l~~l-p~~~~~l~~L~~L~l~ 747 (943)
|++++|... .++... .++|+.|+++++ . ++.+ +..+..+++|++|+++
T Consensus 104 L~l~~n~l~-~~~~~~-~~~L~~L~l~~N----------------------------~-l~~~~~~~~~~l~~L~~L~Ls 152 (317)
T 3o53_A 104 LHAANNNIS-RVSCSR-GQGKKNIYLANN----------------------------K-ITMLRDLDEGCRSRVQYLDLK 152 (317)
T ss_dssp EECCSSCCS-EEEECC-CSSCEEEECCSS----------------------------C-CCSGGGBCTGGGSSEEEEECT
T ss_pred EECCCCccC-CcCccc-cCCCCEEECCCC----------------------------C-CCCccchhhhccCCCCEEECC
Confidence 777776632 222111 112222222221 1 1111 2234445555555555
Q ss_pred CCCCceecCCCCC-CCCCcceEeecccCCCCccccccCCCCccceEEecCCCchhhhhhhhccccCCCCCcCEEEEeecC
Q 048004 748 ECENLVSFPQGGL-PCAKLSMLTVYGCERLKALPKGLHNLTNLHSLEIHGNTKIWKSMIEWGRGFHRFSSLRELKISRCD 826 (943)
Q Consensus 748 ~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~ls~n~ 826 (943)
+|...+..+..+. .+++|++|++++|.+.+. +. ...+++|++|++++|.... ++..+..+++|++|++++|
T Consensus 153 ~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~~-----l~~~~~~l~~L~~L~L~~N- 224 (317)
T 3o53_A 153 LNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLAF-----MGPEFQSAAGVTWISLRNN- 224 (317)
T ss_dssp TSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEECCSSCCCE-----ECGGGGGGTTCSEEECTTS-
T ss_pred CCCCCcccHHHHhhccCcCCEEECCCCcCccc-cc-ccccccCCEEECCCCcCCc-----chhhhcccCcccEEECcCC-
Confidence 5544444333332 345555555555544222 21 2235555555555554322 1112444555555555554
Q ss_pred CCceecCCCccccCCCCCCCCccceeeccCCCCC-cccccccccCCCCCeEEEcCCC
Q 048004 827 DDMVSFPPEDIRLGTTLPLPASLTSLEIGYFPNL-ERLSSSIVDLQNLTSLFLYHCP 882 (943)
Q Consensus 827 ~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l-~~l~~~~~~l~~L~~L~l~~c~ 882 (943)
.+..+|... ..+++|+.|++++|+.. ..+|.++..+++|+.+++.+++
T Consensus 225 -~l~~l~~~~-------~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~ 273 (317)
T 3o53_A 225 -KLVLIEKAL-------RFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVK 273 (317)
T ss_dssp -CCCEECTTC-------CCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred -cccchhhHh-------hcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCch
Confidence 333444332 34455555555554333 2344444444445554444433
No 66
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.77 E-value=1.9e-17 Score=186.15 Aligned_cols=228 Identities=16% Similarity=0.112 Sum_probs=137.4
Q ss_pred CcccEEEEcCCcCeeeeccccCCCCCccEEEEecccccchhhhhhhhhhhccCCccEEeecCCCCcccchhhhhhHHhhh
Q 048004 506 PALCKLHIGGCKKVVWRRPLKLRLPKLEELEIENMKEQTYIWKSHKELLQDICSLKRLTIDSCPKLQSLVAEEEKDQQQQ 585 (943)
Q Consensus 506 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~i~~~~~~~~~~l~~L~~L~l~~~~~L~~l~~~~~~~~~~~ 585 (943)
++++.|++++|.+..+.+..+..+++|+.|++++|..... ....+..+
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~----~~~~~~~l---------------------------- 122 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQI----EVGAFNGL---------------------------- 122 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEE----CTTTTTTC----------------------------
T ss_pred CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCc----ChhhccCc----------------------------
Confidence 4566666666666666666666666666666666543221 11122222
Q ss_pred hhcccccccEEEeecCCCCCCCCccccCccccceEEeccCCCccccCC--ccCCCCccEEEeccCCCCcccccccccCCC
Q 048004 586 LCELSCRLEYLTLSGCQGLVKLPQSSLSLNSLREIEIYKCSSLVSFPE--VALPSKLKKIEIRECDALKSLPEAWMCGTN 663 (943)
Q Consensus 586 l~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~ 663 (943)
++|++|++++|......+..+..+++|++|++++|. ++.++. +..+++|++|++++|+.++.++...+ ..+
T Consensus 123 -----~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~-~~l 195 (452)
T 3zyi_A 123 -----ASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNP-IESIPSYAFNRVPSLMRLDLGELKKLEYISEGAF-EGL 195 (452)
T ss_dssp -----TTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCC-CCEECTTTTTTCTTCCEEECCCCTTCCEECTTTT-TTC
T ss_pred -----ccCCEEECCCCcCCccChhhhcccCCCCEEECCCCC-cceeCHhHHhcCCcccEEeCCCCCCccccChhhc-cCC
Confidence 344444555444333333445666677777777663 344442 44566777777777666666665544 566
Q ss_pred CCCCeEEEeecCCCccccCccCCCCccEEEeccCCCccccccccccccCCCCCCCeeeeeccCCcccccccCCCCCCcCe
Q 048004 664 SSLEILSIQGCHSLTYIAGVQLPPSLKRLEIDFCDNLRTLTVEEGIQSSSSSSSSSRSIWTCENLKFLPSGLHNLRQLQE 743 (943)
Q Consensus 664 ~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~~~L~~l~l~~~~~l~~lp~~~~~l~~L~~ 743 (943)
++|++|++++|. ++.++.....++|+.|+ ++++.--...|..+.++++|+.
T Consensus 196 ~~L~~L~L~~n~-l~~~~~~~~l~~L~~L~----------------------------Ls~N~l~~~~~~~~~~l~~L~~ 246 (452)
T 3zyi_A 196 FNLKYLNLGMCN-IKDMPNLTPLVGLEELE----------------------------MSGNHFPEIRPGSFHGLSSLKK 246 (452)
T ss_dssp TTCCEEECTTSC-CSSCCCCTTCTTCCEEE----------------------------CTTSCCSEECGGGGTTCTTCCE
T ss_pred CCCCEEECCCCc-ccccccccccccccEEE----------------------------CcCCcCcccCcccccCccCCCE
Confidence 777777777765 23333211122222222 2222211222566778888888
Q ss_pred EeecCCCCceecCCCCCCCCCcceEeecccCCCCccccccCCCCccceEEecCCCchh
Q 048004 744 IEIWECENLVSFPQGGLPCAKLSMLTVYGCERLKALPKGLHNLTNLHSLEIHGNTKIW 801 (943)
Q Consensus 744 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~ 801 (943)
|++++|...+..+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|+...
T Consensus 247 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~C 304 (452)
T 3zyi_A 247 LWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNC 304 (452)
T ss_dssp EECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEEC
T ss_pred EEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCC
Confidence 8888887777777778888888888888887766666667888888888888887543
No 67
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.76 E-value=5.4e-18 Score=177.94 Aligned_cols=207 Identities=15% Similarity=0.163 Sum_probs=135.1
Q ss_pred CCcccEEEEcCCcCeeeeccccCCCCCccEEEEecccccchhhhhhhhhhhccCCccEEeecCCCCcccchhhhhhHHhh
Q 048004 505 LPALCKLHIGGCKKVVWRRPLKLRLPKLEELEIENMKEQTYIWKSHKELLQDICSLKRLTIDSCPKLQSLVAEEEKDQQQ 584 (943)
Q Consensus 505 l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~i~~~~~~~~~~l~~L~~L~l~~~~~L~~l~~~~~~~~~~ 584 (943)
.++|++|++++|.+....+..+..+++|+.|++++|..... .+..+..+
T Consensus 31 ~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~----~~~~~~~l--------------------------- 79 (285)
T 1ozn_A 31 PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARI----DAAAFTGL--------------------------- 79 (285)
T ss_dssp CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEE----CTTTTTTC---------------------------
T ss_pred CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCcccee----CHhhcCCc---------------------------
Confidence 34666677777776666666666667777777666543221 11112222
Q ss_pred hhhcccccccEEEeecCCCCCCC-CccccCccccceEEeccCCCccccCC-ccCCCCccEEEeccCCCCcccccccccCC
Q 048004 585 QLCELSCRLEYLTLSGCQGLVKL-PQSSLSLNSLREIEIYKCSSLVSFPE-VALPSKLKKIEIRECDALKSLPEAWMCGT 662 (943)
Q Consensus 585 ~l~~~~~~L~~L~l~~~~~l~~l-~~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~~~L~~L~l~~~~~l~~~~~~~~~~~ 662 (943)
++|++|++++|..++.+ +..+..+++|++|++++|......+. +..+++|++|++++|. ++.++...+ ..
T Consensus 80 ------~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~-~~ 151 (285)
T 1ozn_A 80 ------ALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNA-LQALPDDTF-RD 151 (285)
T ss_dssp ------TTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTT-TT
T ss_pred ------cCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCc-ccccCHhHh-cc
Confidence 35555555555533333 55666777888888887743332232 4456677777777754 344444332 56
Q ss_pred CCCCCeEEEeecCCCccccCccCCCCccEEEeccCCCccccccccccccCCCCCCCeeeeeccCCcccccccCCCCCCcC
Q 048004 663 NSSLEILSIQGCHSLTYIAGVQLPPSLKRLEIDFCDNLRTLTVEEGIQSSSSSSSSSRSIWTCENLKFLPSGLHNLRQLQ 742 (943)
Q Consensus 663 ~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~~~L~~l~l~~~~~l~~lp~~~~~l~~L~ 742 (943)
+++|++|++++|.. +.++ +..+..+++|+
T Consensus 152 l~~L~~L~l~~n~l-~~~~--------------------------------------------------~~~~~~l~~L~ 180 (285)
T 1ozn_A 152 LGNLTHLFLHGNRI-SSVP--------------------------------------------------ERAFRGLHSLD 180 (285)
T ss_dssp CTTCCEEECCSSCC-CEEC--------------------------------------------------TTTTTTCTTCC
T ss_pred CCCccEEECCCCcc-cccC--------------------------------------------------HHHhcCccccC
Confidence 77788888777652 2111 23466788999
Q ss_pred eEeecCCCCceecCCCCCCCCCcceEeecccCCCCccccccCCCCccceEEecCCCchh
Q 048004 743 EIEIWECENLVSFPQGGLPCAKLSMLTVYGCERLKALPKGLHNLTNLHSLEIHGNTKIW 801 (943)
Q Consensus 743 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~ 801 (943)
+|++++|...+..|..+..+++|++|++++|.+.+..+..+..+++|+.|++++|+...
T Consensus 181 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c 239 (285)
T 1ozn_A 181 RLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVC 239 (285)
T ss_dssp EEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEEC
T ss_pred EEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccC
Confidence 99999998877778888889999999999998877666678899999999999998654
No 68
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.75 E-value=5.3e-19 Score=187.99 Aligned_cols=247 Identities=17% Similarity=0.144 Sum_probs=153.8
Q ss_pred ccccEEEeecCCCCCCCCccccCccccceEEeccCCCc-cccCCcc--------CCCCccEEEeccCCCCcccccccccC
Q 048004 591 CRLEYLTLSGCQGLVKLPQSSLSLNSLREIEIYKCSSL-VSFPEVA--------LPSKLKKIEIRECDALKSLPEAWMCG 661 (943)
Q Consensus 591 ~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~~l-~~~~~~~--------~~~~L~~L~l~~~~~l~~~~~~~~~~ 661 (943)
++|+.|++++|.. .+|..+... |+.|++++|..- ..++... .+++|++|++++|...+.+|..++..
T Consensus 43 ~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~ 118 (312)
T 1wwl_A 43 RSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEA 118 (312)
T ss_dssp EECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSC
T ss_pred CCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHh
Confidence 3555666666655 455544332 666666665331 1233211 35667777777766555566554335
Q ss_pred CCCCCCeEEEeecCCCccccCccCCCCccEEEeccCCCccccccccccccCCCCCCCeeeeeccCCcccccccCCC----
Q 048004 662 TNSSLEILSIQGCHSLTYIAGVQLPPSLKRLEIDFCDNLRTLTVEEGIQSSSSSSSSSRSIWTCENLKFLPSGLHN---- 737 (943)
Q Consensus 662 ~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~~~L~~l~l~~~~~l~~lp~~~~~---- 737 (943)
.+++|++|++++|...+ ++ ..+..
T Consensus 119 ~l~~L~~L~Ls~N~l~~-~~---------------------------------------------------~~~~~l~~~ 146 (312)
T 1wwl_A 119 TGPDLNILNLRNVSWAT-RD---------------------------------------------------AWLAELQQW 146 (312)
T ss_dssp CSCCCSEEEEESCBCSS-SS---------------------------------------------------SHHHHHHTT
T ss_pred cCCCccEEEccCCCCcc-hh---------------------------------------------------HHHHHHHHh
Confidence 66777777777766322 11 11222
Q ss_pred -CCCcCeEeecCCCCceecCCCCCCCCCcceEeecccCCCCc--ccccc--CCCCccceEEecCCCchhhhhhhhccccC
Q 048004 738 -LRQLQEIEIWECENLVSFPQGGLPCAKLSMLTVYGCERLKA--LPKGL--HNLTNLHSLEIHGNTKIWKSMIEWGRGFH 812 (943)
Q Consensus 738 -l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~--~~~~l--~~l~~L~~L~l~~n~~~~~~~~~~~~~~~ 812 (943)
+++|++|++++|...+..|..+..+++|++|++++|.+.+. +|..+ ..+++|++|++++|....... .....+.
T Consensus 147 ~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~~~ 225 (312)
T 1wwl_A 147 LKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSG-VCSALAA 225 (312)
T ss_dssp CCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHH-HHHHHHH
T ss_pred hcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHH-HHHHHHh
Confidence 37788888888876666667777788888888888876554 23333 777888888888886542111 0011145
Q ss_pred CCCCcCEEEEeecCCCceecC-CCccccCCCCCCCCccceeeccCCCCCcccccccccCCCCCeEEEcCCCCCCCCCCCC
Q 048004 813 RFSSLRELKISRCDDDMVSFP-PEDIRLGTTLPLPASLTSLEIGYFPNLERLSSSIVDLQNLTSLFLYHCPKLKYFPEKG 891 (943)
Q Consensus 813 ~l~~L~~L~ls~n~~~~~~~~-~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~ 891 (943)
.+++|++|++++| .+...+ ...+ ..+++|++|++++| .++.+|..+. ++|+.|++++| +++.+|...
T Consensus 226 ~l~~L~~L~Ls~N--~l~~~~~~~~~------~~l~~L~~L~Ls~N-~l~~ip~~~~--~~L~~L~Ls~N-~l~~~p~~~ 293 (312)
T 1wwl_A 226 ARVQLQGLDLSHN--SLRDAAGAPSC------DWPSQLNSLNLSFT-GLKQVPKGLP--AKLSVLDLSYN-RLDRNPSPD 293 (312)
T ss_dssp TTCCCSEEECTTS--CCCSSCCCSCC------CCCTTCCEEECTTS-CCSSCCSSCC--SEEEEEECCSS-CCCSCCCTT
T ss_pred cCCCCCEEECCCC--cCCcccchhhh------hhcCCCCEEECCCC-ccChhhhhcc--CCceEEECCCC-CCCCChhHh
Confidence 6788888888886 333322 2222 45678888888885 4668886555 78888888885 677777644
Q ss_pred CCcccceeeecCCcc
Q 048004 892 LPSSLLELIIYRCPL 906 (943)
Q Consensus 892 ~~~~L~~L~i~~c~~ 906 (943)
.+++|++|++++|+.
T Consensus 294 ~l~~L~~L~L~~N~l 308 (312)
T 1wwl_A 294 ELPQVGNLSLKGNPF 308 (312)
T ss_dssp TSCEEEEEECTTCTT
T ss_pred hCCCCCEEeccCCCC
Confidence 578888888888875
No 69
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.75 E-value=5.9e-19 Score=188.06 Aligned_cols=240 Identities=13% Similarity=0.108 Sum_probs=124.1
Q ss_pred CCCcccEEEEcCCcCeeeeccccCCCCCccEEEEecccccchhhhhhhhhhhccCCccEEeecCCCCcccchhhhhhHHh
Q 048004 504 SLPALCKLHIGGCKKVVWRRPLKLRLPKLEELEIENMKEQTYIWKSHKELLQDICSLKRLTIDSCPKLQSLVAEEEKDQQ 583 (943)
Q Consensus 504 ~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~i~~~~~~~~~~l~~L~~L~l~~~~~L~~l~~~~~~~~~ 583 (943)
.+++|++|++++|.+....+..+..+++|+.|++++|...... + +..+++|+.|++++| .++.+...
T Consensus 32 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~----~--~~~l~~L~~L~Ls~n-~l~~l~~~------ 98 (317)
T 3o53_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETL----D--LESLSTLRTLDLNNN-YVQELLVG------ 98 (317)
T ss_dssp TGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEE----E--ETTCTTCCEEECCSS-EEEEEEEC------
T ss_pred cCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcch----h--hhhcCCCCEEECcCC-ccccccCC------
Confidence 3445555555555555554445555555555555555443221 0 344455555555554 22222211
Q ss_pred hhhhcccccccEEEeecCCCCCCCCccccCccccceEEeccCCCccccC-CccCCCCccEEEeccCCCCcccccccccCC
Q 048004 584 QQLCELSCRLEYLTLSGCQGLVKLPQSSLSLNSLREIEIYKCSSLVSFP-EVALPSKLKKIEIRECDALKSLPEAWMCGT 662 (943)
Q Consensus 584 ~~l~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~~-~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~ 662 (943)
++|++|++++|......+. .+++|++|++++|......+ .+..+++|++|++++|......+..+ ...
T Consensus 99 -------~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~-~~~ 167 (317)
T 3o53_A 99 -------PSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAEL-AAS 167 (317)
T ss_dssp -------TTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGG-GGG
T ss_pred -------CCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHH-hhc
Confidence 4666666666654432222 35566777777663332222 23445666666666654333222222 135
Q ss_pred CCCCCeEEEeecCCCccccCccCCCCccEEEeccCCCccccccccccccCCCCCCCeeeeeccCCcccccccCCCCCCcC
Q 048004 663 NSSLEILSIQGCHSLTYIAGVQLPPSLKRLEIDFCDNLRTLTVEEGIQSSSSSSSSSRSIWTCENLKFLPSGLHNLRQLQ 742 (943)
Q Consensus 663 ~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~~~L~~l~l~~~~~l~~lp~~~~~l~~L~ 742 (943)
+++|++|++++|.. +.++. ...+++|+
T Consensus 168 l~~L~~L~L~~N~l-~~~~~----------------------------------------------------~~~l~~L~ 194 (317)
T 3o53_A 168 SDTLEHLNLQYNFI-YDVKG----------------------------------------------------QVVFAKLK 194 (317)
T ss_dssp TTTCCEEECTTSCC-CEEEC----------------------------------------------------CCCCTTCC
T ss_pred cCcCCEEECCCCcC-ccccc----------------------------------------------------ccccccCC
Confidence 56677777666652 22111 11256666
Q ss_pred eEeecCCCCceecCCCCCCCCCcceEeecccCCCCccccccCCCCccceEEecCCCchhhhhhhhccccCCCCCcCEEEE
Q 048004 743 EIEIWECENLVSFPQGGLPCAKLSMLTVYGCERLKALPKGLHNLTNLHSLEIHGNTKIWKSMIEWGRGFHRFSSLRELKI 822 (943)
Q Consensus 743 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~l 822 (943)
+|++++|... .+|..+..+++|++|++++|.+. .+|..+..+++|+.|++++|+......+.+ +..+++|+.|++
T Consensus 195 ~L~Ls~N~l~-~l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~---~~~~~~L~~l~l 269 (317)
T 3o53_A 195 TLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDF---FSKNQRVQTVAK 269 (317)
T ss_dssp EEECCSSCCC-EECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHH---HHTCHHHHHHHH
T ss_pred EEECCCCcCC-cchhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHH---HhccccceEEEC
Confidence 6666666433 34444556666666666666543 455566666666677776666553333332 455666666666
Q ss_pred eec
Q 048004 823 SRC 825 (943)
Q Consensus 823 s~n 825 (943)
++|
T Consensus 270 ~~~ 272 (317)
T 3o53_A 270 QTV 272 (317)
T ss_dssp HHH
T ss_pred CCc
Confidence 653
No 70
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.74 E-value=3.5e-17 Score=166.65 Aligned_cols=210 Identities=17% Similarity=0.203 Sum_probs=128.5
Q ss_pred CccccCCccCCCCccEEEeccCCCCcccccccccCCCCCCCeEEEeecCCCccccCccCCCCccEEEeccCCCccccccc
Q 048004 627 SLVSFPEVALPSKLKKIEIRECDALKSLPEAWMCGTNSSLEILSIQGCHSLTYIAGVQLPPSLKRLEIDFCDNLRTLTVE 706 (943)
Q Consensus 627 ~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~c~~L~~l~~~ 706 (943)
.++.+|. .+++|++|++++|. ++.++...+ ..+++|++|++++|..++.++
T Consensus 22 ~l~~ip~--~~~~l~~L~l~~n~-l~~i~~~~~-~~l~~L~~L~l~~n~~l~~i~------------------------- 72 (239)
T 2xwt_C 22 DIQRIPS--LPPSTQTLKLIETH-LRTIPSHAF-SNLPNISRIYVSIDVTLQQLE------------------------- 72 (239)
T ss_dssp SCSSCCC--CCTTCCEEEEESCC-CSEECTTTT-TTCTTCCEEEEECCSSCCEEC-------------------------
T ss_pred CccccCC--CCCcccEEEEeCCc-ceEECHHHc-cCCCCCcEEeCCCCCCcceeC-------------------------
Confidence 3555555 44566666666643 444544333 566777777777765333322
Q ss_pred cccccCCCCCCCeeeeeccCCcccccccCCCCCCcCeEeecCCCCceecC-CCCCCCCCcceEeecccCCCCccccccCC
Q 048004 707 EGIQSSSSSSSSSRSIWTCENLKFLPSGLHNLRQLQEIEIWECENLVSFP-QGGLPCAKLSMLTVYGCERLKALPKGLHN 785 (943)
Q Consensus 707 ~~~~~~~~~~L~~l~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~l~~ 785 (943)
+..+.++++|++|++++|+.+..++ ..+..+++|++|++++|.+.+ +|. +..
T Consensus 73 -------------------------~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~-lp~-~~~ 125 (239)
T 2xwt_C 73 -------------------------SHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKM-FPD-LTK 125 (239)
T ss_dssp -------------------------TTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCS-CCC-CTT
T ss_pred -------------------------HhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCcc-ccc-ccc
Confidence 1234556677777776622333333 345566777777777776544 554 666
Q ss_pred CCccc---eEEecCCCchhhhhhhhccccCCCCCcC-EEEEeecCCCceecCCCccccCCCCCCCCccceeeccCCCCCc
Q 048004 786 LTNLH---SLEIHGNTKIWKSMIEWGRGFHRFSSLR-ELKISRCDDDMVSFPPEDIRLGTTLPLPASLTSLEIGYFPNLE 861 (943)
Q Consensus 786 l~~L~---~L~l~~n~~~~~~~~~~~~~~~~l~~L~-~L~ls~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~ 861 (943)
+++|+ +|++++|+.+..... ..|..+++|+ +|++++| .+..+|...+ .. ++|++|++++|+.++
T Consensus 126 l~~L~~L~~L~l~~N~~l~~i~~---~~~~~l~~L~~~L~l~~n--~l~~i~~~~~------~~-~~L~~L~L~~n~~l~ 193 (239)
T 2xwt_C 126 VYSTDIFFILEITDNPYMTSIPV---NAFQGLCNETLTLKLYNN--GFTSVQGYAF------NG-TKLDAVYLNKNKYLT 193 (239)
T ss_dssp CCBCCSEEEEEEESCTTCCEECT---TTTTTTBSSEEEEECCSC--CCCEECTTTT------TT-CEEEEEECTTCTTCC
T ss_pred ccccccccEEECCCCcchhhcCc---ccccchhcceeEEEcCCC--CCcccCHhhc------CC-CCCCEEEcCCCCCcc
Confidence 66666 777777732221111 1266777777 7888776 5557776554 23 678888888876677
Q ss_pred cccc-ccccC-CCCCeEEEcCCCCCCCCCCCCCCcccceeeecCCcc
Q 048004 862 RLSS-SIVDL-QNLTSLFLYHCPKLKYFPEKGLPSSLLELIIYRCPL 906 (943)
Q Consensus 862 ~l~~-~~~~l-~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~i~~c~~ 906 (943)
.+|. .+.++ ++|+.|++++ +.++.+|.. .+++|+.|++++|+.
T Consensus 194 ~i~~~~~~~l~~~L~~L~l~~-N~l~~l~~~-~~~~L~~L~l~~~~~ 238 (239)
T 2xwt_C 194 VIDKDAFGGVYSGPSLLDVSQ-TSVTALPSK-GLEHLKELIARNTWT 238 (239)
T ss_dssp EECTTTTTTCSBCCSEEECTT-CCCCCCCCT-TCTTCSEEECTTC--
T ss_pred cCCHHHhhccccCCcEEECCC-CccccCChh-HhccCceeeccCccC
Confidence 7754 45677 8888888887 457777765 457888888888765
No 71
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.73 E-value=2.1e-17 Score=186.53 Aligned_cols=238 Identities=11% Similarity=0.038 Sum_probs=131.4
Q ss_pred cccccccEEEeecCCCCCCCCccccCccccceEEeccCCCccccCCccCCCCccEEEeccCCCCcccccccccCCCCCCC
Q 048004 588 ELSCRLEYLTLSGCQGLVKLPQSSLSLNSLREIEIYKCSSLVSFPEVALPSKLKKIEIRECDALKSLPEAWMCGTNSSLE 667 (943)
Q Consensus 588 ~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~ 667 (943)
..+++|+.|++++|......|..+..+++|++|++++|...+.. .+..+++|++|++++|. ++.++. .++|+
T Consensus 31 ~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-~l~~l~~L~~L~Ls~N~-l~~l~~------~~~L~ 102 (487)
T 3oja_A 31 QSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETL-DLESLSTLRTLDLNNNY-VQELLV------GPSIE 102 (487)
T ss_dssp TTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEE-ECTTCTTCCEEECCSSE-EEEEEE------CTTCC
T ss_pred ccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCc-ccccCCCCCEEEecCCc-CCCCCC------CCCcC
Confidence 34468999999998877766778889999999999988544333 36778888888888863 444432 26788
Q ss_pred eEEEeecCCCccccCccCCCCccEEEeccCCCccccccccccccCCCCCCCeeeeeccCCcccccccCCCCCCcCeEeec
Q 048004 668 ILSIQGCHSLTYIAGVQLPPSLKRLEIDFCDNLRTLTVEEGIQSSSSSSSSSRSIWTCENLKFLPSGLHNLRQLQEIEIW 747 (943)
Q Consensus 668 ~L~l~~~~~l~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~~~L~~l~l~~~~~l~~lp~~~~~l~~L~~L~l~ 747 (943)
.|++++|.... ++... .++|+.|++++ +.--...|..+.++++|+.|+++
T Consensus 103 ~L~L~~N~l~~-~~~~~-l~~L~~L~L~~----------------------------N~l~~~~~~~~~~l~~L~~L~Ls 152 (487)
T 3oja_A 103 TLHAANNNISR-VSCSR-GQGKKNIYLAN----------------------------NKITMLRDLDEGCRSRVQYLDLK 152 (487)
T ss_dssp EEECCSSCCCC-EEECC-CSSCEEEECCS----------------------------SCCCSGGGBCGGGGSSEEEEECT
T ss_pred EEECcCCcCCC-CCccc-cCCCCEEECCC----------------------------CCCCCCCchhhcCCCCCCEEECC
Confidence 88888776322 22111 11222222222 21111123445555666666666
Q ss_pred CCCCceecCCCCC-CCCCcceEeecccCCCCccccccCCCCccceEEecCCCchhhhhhhhccccCCCCCcCEEEEeecC
Q 048004 748 ECENLVSFPQGGL-PCAKLSMLTVYGCERLKALPKGLHNLTNLHSLEIHGNTKIWKSMIEWGRGFHRFSSLRELKISRCD 826 (943)
Q Consensus 748 ~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~ls~n~ 826 (943)
+|...+..|..+. .+++|++|++++|.+.+. |. ...+++|+.|++++|.... .+..+..+++|+.|++++|
T Consensus 153 ~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~~-----~~~~~~~l~~L~~L~Ls~N- 224 (487)
T 3oja_A 153 LNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLAF-----MGPEFQSAAGVTWISLRNN- 224 (487)
T ss_dssp TSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEECCSSCCCE-----ECGGGGGGTTCSEEECTTS-
T ss_pred CCCCCCcChHHHhhhCCcccEEecCCCccccc-cc-cccCCCCCEEECCCCCCCC-----CCHhHcCCCCccEEEecCC-
Confidence 6655555554443 455666666666654333 22 2245566666666664332 1122455556666666654
Q ss_pred CCceecCCCccccCCCCCCCCccceeeccCCCCC-cccccccccCCCCCeEEEc
Q 048004 827 DDMVSFPPEDIRLGTTLPLPASLTSLEIGYFPNL-ERLSSSIVDLQNLTSLFLY 879 (943)
Q Consensus 827 ~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l-~~l~~~~~~l~~L~~L~l~ 879 (943)
.+..+|... ..+++|+.|++++|+.. ..+|.++..++.|+.+++.
T Consensus 225 -~l~~lp~~l-------~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 225 -KLVLIEKAL-------RFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp -CCCEECTTC-------CCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred -cCcccchhh-------ccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence 333444432 34555555555555433 2444444445555554443
No 72
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.70 E-value=2.4e-17 Score=185.97 Aligned_cols=146 Identities=13% Similarity=0.074 Sum_probs=76.4
Q ss_pred CcccEEEEcCCcCeeeeccccCCCCCccEEEEecccccchhhhhhhhhhhccCCccEEeecCCCCcccchhhhhhHHhhh
Q 048004 506 PALCKLHIGGCKKVVWRRPLKLRLPKLEELEIENMKEQTYIWKSHKELLQDICSLKRLTIDSCPKLQSLVAEEEKDQQQQ 585 (943)
Q Consensus 506 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~i~~~~~~~~~~l~~L~~L~l~~~~~L~~l~~~~~~~~~~~ 585 (943)
++|+.|++++|.+....+..+..+++|+.|++++|...... + +..+++|+.|++++| .++.++..
T Consensus 34 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~----~--l~~l~~L~~L~Ls~N-~l~~l~~~-------- 98 (487)
T 3oja_A 34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETL----D--LESLSTLRTLDLNNN-YVQELLVG-------- 98 (487)
T ss_dssp GGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEE----E--CTTCTTCCEEECCSS-EEEEEEEC--------
T ss_pred CCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCc----c--cccCCCCCEEEecCC-cCCCCCCC--------
Confidence 34555555555554444444455555555555554433221 0 344455555555544 23322211
Q ss_pred hhcccccccEEEeecCCCCCCCCccccCccccceEEeccCCCccccC-CccCCCCccEEEeccCCCCcccccccccCCCC
Q 048004 586 LCELSCRLEYLTLSGCQGLVKLPQSSLSLNSLREIEIYKCSSLVSFP-EVALPSKLKKIEIRECDALKSLPEAWMCGTNS 664 (943)
Q Consensus 586 l~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~~-~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~ 664 (943)
++|+.|++++|......+. .+++|+.|++++|......| .++.+++|+.|++++|...+..|..+. ..++
T Consensus 99 -----~~L~~L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~-~~l~ 169 (487)
T 3oja_A 99 -----PSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELA-ASSD 169 (487)
T ss_dssp -----TTCCEEECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGG-GGTT
T ss_pred -----CCcCEEECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHh-hhCC
Confidence 4666777776665443322 35667777777774443333 244566777777777554444444332 3567
Q ss_pred CCCeEEEeecC
Q 048004 665 SLEILSIQGCH 675 (943)
Q Consensus 665 ~L~~L~l~~~~ 675 (943)
+|+.|++++|.
T Consensus 170 ~L~~L~Ls~N~ 180 (487)
T 3oja_A 170 TLEHLNLQYNF 180 (487)
T ss_dssp TCCEEECTTSC
T ss_pred cccEEecCCCc
Confidence 77777777766
No 73
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.70 E-value=3.7e-18 Score=181.42 Aligned_cols=200 Identities=19% Similarity=0.213 Sum_probs=122.6
Q ss_pred CccccceEEeccCCCccccCC-c--cCCCCccEEEeccCCCCcccccccccCCC-----CCCCeEEEeecCCCccccCcc
Q 048004 613 SLNSLREIEIYKCSSLVSFPE-V--ALPSKLKKIEIRECDALKSLPEAWMCGTN-----SSLEILSIQGCHSLTYIAGVQ 684 (943)
Q Consensus 613 ~l~~L~~L~l~~~~~l~~~~~-~--~~~~~L~~L~l~~~~~l~~~~~~~~~~~~-----~~L~~L~l~~~~~l~~~~~~~ 684 (943)
.+++|++|++++|...+.+|. + ..+++|++|++++|.. +.+|..+ ..+ ++|++|++++|...+ ++
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l-~~~~~~~--~~l~~~~~~~L~~L~L~~N~l~~-~~--- 165 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSW-ATRDAWL--AELQQWLKPGLKVLSIAQAHSLN-FS--- 165 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBC-SSSSSHH--HHHHTTCCTTCCEEEEESCSCCC-CC---
T ss_pred CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCC-cchhHHH--HHHHHhhcCCCcEEEeeCCCCcc-ch---
Confidence 456666666666654444443 1 4566666666666443 3334332 233 677777777776211 11
Q ss_pred CCCCccEEEeccCCCccccccccccccCCCCCCCeeeeeccCCcccccccCCCCCCcCeEeecCCCCcee--cCCCC--C
Q 048004 685 LPPSLKRLEIDFCDNLRTLTVEEGIQSSSSSSSSSRSIWTCENLKFLPSGLHNLRQLQEIEIWECENLVS--FPQGG--L 760 (943)
Q Consensus 685 ~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~~~L~~l~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~--~~~~~--~ 760 (943)
|..+.++++|++|++++|...+. ++..+ .
T Consensus 166 -----------------------------------------------~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~ 198 (312)
T 1wwl_A 166 -----------------------------------------------CEQVRVFPALSTLDLSDNPELGERGLISALCPL 198 (312)
T ss_dssp -----------------------------------------------TTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTT
T ss_pred -----------------------------------------------HHHhccCCCCCEEECCCCCcCcchHHHHHHHhc
Confidence 24456677777777777765554 22222 5
Q ss_pred CCCCcceEeecccCCCC--ccc-cccCCCCccceEEecCCCchhhhhhhhccccCCCCCcCEEEEeecCCCceecCCCcc
Q 048004 761 PCAKLSMLTVYGCERLK--ALP-KGLHNLTNLHSLEIHGNTKIWKSMIEWGRGFHRFSSLRELKISRCDDDMVSFPPEDI 837 (943)
Q Consensus 761 ~l~~L~~L~l~~~~~~~--~~~-~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~~~~~~~ 837 (943)
.+++|++|++++|.+.+ .++ ..+..+++|++|++++|...... + ...+..+++|++|++++| .+..+|...
T Consensus 199 ~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-~--~~~~~~l~~L~~L~Ls~N--~l~~ip~~~- 272 (312)
T 1wwl_A 199 KFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAA-G--APSCDWPSQLNSLNLSFT--GLKQVPKGL- 272 (312)
T ss_dssp SCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSC-C--CSCCCCCTTCCEEECTTS--CCSSCCSSC-
T ss_pred cCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCccc-c--hhhhhhcCCCCEEECCCC--ccChhhhhc-
Confidence 66778888888776642 222 22356778888888887644322 0 012556778888888886 455666543
Q ss_pred ccCCCCCCCCccceeeccCCCCCcccccccccCCCCCeEEEcCCC
Q 048004 838 RLGTTLPLPASLTSLEIGYFPNLERLSSSIVDLQNLTSLFLYHCP 882 (943)
Q Consensus 838 ~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~ 882 (943)
. ++|++|++++| .++.+|. +..+++|+.|++++++
T Consensus 273 ------~--~~L~~L~Ls~N-~l~~~p~-~~~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 273 ------P--AKLSVLDLSYN-RLDRNPS-PDELPQVGNLSLKGNP 307 (312)
T ss_dssp ------C--SEEEEEECCSS-CCCSCCC-TTTSCEEEEEECTTCT
T ss_pred ------c--CCceEEECCCC-CCCCChh-HhhCCCCCEEeccCCC
Confidence 2 78888888885 5676665 7788888888888854
No 74
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.70 E-value=2.5e-16 Score=160.34 Aligned_cols=199 Identities=16% Similarity=0.202 Sum_probs=94.0
Q ss_pred ccceEEeccCCCccccCC--ccCCCCccEEEeccCCCCcccccccccCCCCCCCeEEEeecCCCccccCccCCCCccEEE
Q 048004 616 SLREIEIYKCSSLVSFPE--VALPSKLKKIEIRECDALKSLPEAWMCGTNSSLEILSIQGCHSLTYIAGVQLPPSLKRLE 693 (943)
Q Consensus 616 ~L~~L~l~~~~~l~~~~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~ 693 (943)
+|++|++++|. ++.++. +..+++|++|++++|..++.++...+ ..+++|++|++++|..++.++
T Consensus 32 ~l~~L~l~~n~-l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f-~~l~~L~~L~l~~~n~l~~i~------------ 97 (239)
T 2xwt_C 32 STQTLKLIETH-LRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSF-YNLSKVTHIEIRNTRNLTYID------------ 97 (239)
T ss_dssp TCCEEEEESCC-CSEECTTTTTTCTTCCEEEEECCSSCCEECTTTE-ESCTTCCEEEEEEETTCCEEC------------
T ss_pred cccEEEEeCCc-ceEECHHHccCCCCCcEEeCCCCCCcceeCHhHc-CCCcCCcEEECCCCCCeeEcC------------
Confidence 56666666553 333332 34456666666666544555554333 456666666666632232222
Q ss_pred eccCCCccccccccccccCCCCCCCeeeeeccCCcccccccCCCCCCcCeEeecCCCCceecCCCCCCCCCcc---eEee
Q 048004 694 IDFCDNLRTLTVEEGIQSSSSSSSSSRSIWTCENLKFLPSGLHNLRQLQEIEIWECENLVSFPQGGLPCAKLS---MLTV 770 (943)
Q Consensus 694 l~~c~~L~~l~~~~~~~~~~~~~L~~l~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~---~L~l 770 (943)
+..+.++++|++|++++|...+ +|. +..+++|+ +|++
T Consensus 98 --------------------------------------~~~f~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l 137 (239)
T 2xwt_C 98 --------------------------------------PDALKELPLLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEI 137 (239)
T ss_dssp --------------------------------------TTSEECCTTCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEE
T ss_pred --------------------------------------HHHhCCCCCCCEEeCCCCCCcc-ccc-cccccccccccEEEC
Confidence 1123334444444444443222 333 33444444 5555
Q ss_pred ccc-CCCCccccccCCCCccc-eEEecCCCchhhhhhhhccccCCCCCcCEEEEeecCCCceecCCCccccCCCCCCC-C
Q 048004 771 YGC-ERLKALPKGLHNLTNLH-SLEIHGNTKIWKSMIEWGRGFHRFSSLRELKISRCDDDMVSFPPEDIRLGTTLPLP-A 847 (943)
Q Consensus 771 ~~~-~~~~~~~~~l~~l~~L~-~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~~~~~~~~~~~~~~~l-~ 847 (943)
++| .+.+..+..+.++++|+ +|++++|..... +.. .+.. ++|++|++++| ..+..++.+.| ..+ +
T Consensus 138 ~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i--~~~--~~~~-~~L~~L~L~~n-~~l~~i~~~~~------~~l~~ 205 (239)
T 2xwt_C 138 TDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSV--QGY--AFNG-TKLDAVYLNKN-KYLTVIDKDAF------GGVYS 205 (239)
T ss_dssp ESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEE--CTT--TTTT-CEEEEEECTTC-TTCCEECTTTT------TTCSB
T ss_pred CCCcchhhcCcccccchhcceeEEEcCCCCCccc--CHh--hcCC-CCCCEEEcCCC-CCcccCCHHHh------hcccc
Confidence 554 32222222344555555 555555543211 110 1222 45555555553 11444444433 344 5
Q ss_pred ccceeeccCCCCCcccccccccCCCCCeEEEcCCCC
Q 048004 848 SLTSLEIGYFPNLERLSSSIVDLQNLTSLFLYHCPK 883 (943)
Q Consensus 848 ~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~ 883 (943)
+|+.|+++++ .++.+|. ..+++|+.|++.++..
T Consensus 206 ~L~~L~l~~N-~l~~l~~--~~~~~L~~L~l~~~~~ 238 (239)
T 2xwt_C 206 GPSLLDVSQT-SVTALPS--KGLEHLKELIARNTWT 238 (239)
T ss_dssp CCSEEECTTC-CCCCCCC--TTCTTCSEEECTTC--
T ss_pred CCcEEECCCC-ccccCCh--hHhccCceeeccCccC
Confidence 6666666663 4556665 3677777777776643
No 75
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.69 E-value=3e-16 Score=163.72 Aligned_cols=136 Identities=20% Similarity=0.158 Sum_probs=79.0
Q ss_pred ccCCCCCCcCeEeecCCCCceecCCCCCCCCCcceEeecccCCCC-ccccccCCCCccceEEecCCCchhhhhhhhcccc
Q 048004 733 SGLHNLRQLQEIEIWECENLVSFPQGGLPCAKLSMLTVYGCERLK-ALPKGLHNLTNLHSLEIHGNTKIWKSMIEWGRGF 811 (943)
Q Consensus 733 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~ 811 (943)
..+.++++|++|++++|...+..+..+..+++|++|++++|.+.+ .+|..+..+++|++|++++|........ .+
T Consensus 94 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~----~~ 169 (276)
T 2z62_A 94 GAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT----DL 169 (276)
T ss_dssp TTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGG----GG
T ss_pred hhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHH----Hh
Confidence 345566777777777775555444456667777777777776654 2466677777777777777754432111 13
Q ss_pred CCCCCcC----EEEEeecCCCceecCCCccccCCCCCCCCccceeeccCCCCCcccccc-cccCCCCCeEEEcCCC
Q 048004 812 HRFSSLR----ELKISRCDDDMVSFPPEDIRLGTTLPLPASLTSLEIGYFPNLERLSSS-IVDLQNLTSLFLYHCP 882 (943)
Q Consensus 812 ~~l~~L~----~L~ls~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~-~~~l~~L~~L~l~~c~ 882 (943)
..+++|+ .|++++| .+..++...+ ...+|++|++++|. ++.+|.. +..+++|+.|++++++
T Consensus 170 ~~l~~L~~l~l~L~ls~n--~l~~~~~~~~-------~~~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~N~ 235 (276)
T 2z62_A 170 RVLHQMPLLNLSLDLSLN--PMNFIQPGAF-------KEIRLKELALDTNQ-LKSVPDGIFDRLTSLQKIWLHTNP 235 (276)
T ss_dssp HHHHTCTTCCEEEECCSS--CCCEECTTSS-------CSCCEEEEECCSSC-CSCCCTTTTTTCCSCCEEECCSSC
T ss_pred hhhhhccccceeeecCCC--cccccCcccc-------CCCcccEEECCCCc-eeecCHhHhcccccccEEEccCCc
Confidence 3333333 6677765 4555554442 23356666666643 5555543 3556666666666543
No 76
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.69 E-value=8.5e-16 Score=159.45 Aligned_cols=134 Identities=18% Similarity=0.166 Sum_probs=68.0
Q ss_pred CCCCCCcCeEeecCCCCceecCCCCCCCCCcceEeecccCCCCccccccCCCCccceEEecCCCchhhhhhhhccccCCC
Q 048004 735 LHNLRQLQEIEIWECENLVSFPQGGLPCAKLSMLTVYGCERLKALPKGLHNLTNLHSLEIHGNTKIWKSMIEWGRGFHRF 814 (943)
Q Consensus 735 ~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l 814 (943)
+.++++|++|++++|...+..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|....... ..+..+
T Consensus 81 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~----~~~~~l 156 (270)
T 2o6q_A 81 FKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPK----GVFDKL 156 (270)
T ss_dssp TSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT----TTTTTC
T ss_pred hcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCH----hHccCC
Confidence 3456666666666665443333344556666666666666555545555666666666666664332111 114555
Q ss_pred CCcCEEEEeecCCCceecCCCccccCCCCCCCCccceeeccCCCCCcccccc-cccCCCCCeEEEcCC
Q 048004 815 SSLRELKISRCDDDMVSFPPEDIRLGTTLPLPASLTSLEIGYFPNLERLSSS-IVDLQNLTSLFLYHC 881 (943)
Q Consensus 815 ~~L~~L~ls~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~-~~~l~~L~~L~l~~c 881 (943)
++|++|++++| .+..++...+ ..+++|++|++++| .++.+|.. +..+++|+.|+++++
T Consensus 157 ~~L~~L~L~~n--~l~~~~~~~~------~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N 215 (270)
T 2o6q_A 157 TSLKELRLYNN--QLKRVPEGAF------DKLTELKTLKLDNN-QLKRVPEGAFDSLEKLKMLQLQEN 215 (270)
T ss_dssp TTCCEEECCSS--CCSCCCTTTT------TTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSS
T ss_pred cccceeEecCC--cCcEeChhHh------ccCCCcCEEECCCC-cCCcCCHHHhccccCCCEEEecCC
Confidence 66666666654 3444443332 34455555555553 33344332 334444444444443
No 77
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.67 E-value=1.3e-15 Score=164.60 Aligned_cols=154 Identities=18% Similarity=0.139 Sum_probs=71.8
Q ss_pred cCCCCCCcCeEeecCCCCceecCCCCCCCCCcceEeecccCCCCcccc-ccCCC-CccceEEecCCCchhhhhhhhcccc
Q 048004 734 GLHNLRQLQEIEIWECENLVSFPQGGLPCAKLSMLTVYGCERLKALPK-GLHNL-TNLHSLEIHGNTKIWKSMIEWGRGF 811 (943)
Q Consensus 734 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~l~~l-~~L~~L~l~~n~~~~~~~~~~~~~~ 811 (943)
.+.++++|++|++++|......+..+....++..|++.++..++.++. .+..+ ..++.|++++|.... ++..+
T Consensus 99 ~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~-----i~~~~ 173 (350)
T 4ay9_X 99 AFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE-----IHNSA 173 (350)
T ss_dssp SBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE-----ECTTS
T ss_pred hhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccC-----CChhh
Confidence 344455555555555543333333333344455555544443333332 23333 235555555554321 11112
Q ss_pred CCCCCcCEEEEeecCCCceecCCCccccCCCCCCCCccceeeccCCCCCcccccccccCCCCCeEEEcCCCCCCCCCCCC
Q 048004 812 HRFSSLRELKISRCDDDMVSFPPEDIRLGTTLPLPASLTSLEIGYFPNLERLSSSIVDLQNLTSLFLYHCPKLKYFPEKG 891 (943)
Q Consensus 812 ~~l~~L~~L~ls~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~ 891 (943)
...++|++|++++ +..++.+|.+.| ..+++|+.|+++++ .++.+|. ..+.+|+.|.+.+|++++.+|...
T Consensus 174 f~~~~L~~l~l~~-~n~l~~i~~~~f------~~l~~L~~LdLs~N-~l~~lp~--~~~~~L~~L~~l~~~~l~~lP~l~ 243 (350)
T 4ay9_X 174 FNGTQLDELNLSD-NNNLEELPNDVF------HGASGPVILDISRT-RIHSLPS--YGLENLKKLRARSTYNLKKLPTLE 243 (350)
T ss_dssp STTEEEEEEECTT-CTTCCCCCTTTT------TTEECCSEEECTTS-CCCCCCS--SSCTTCCEEECTTCTTCCCCCCTT
T ss_pred ccccchhHHhhcc-CCcccCCCHHHh------ccCcccchhhcCCC-CcCccCh--hhhccchHhhhccCCCcCcCCCch
Confidence 2334555555554 234555554443 34555555555553 4555554 345555555555555555555433
Q ss_pred CCcccceeeec
Q 048004 892 LPSSLLELIIY 902 (943)
Q Consensus 892 ~~~~L~~L~i~ 902 (943)
-+++|+.+++.
T Consensus 244 ~l~~L~~l~l~ 254 (350)
T 4ay9_X 244 KLVALMEASLT 254 (350)
T ss_dssp TCCSCCEEECS
T ss_pred hCcChhhCcCC
Confidence 34555555554
No 78
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.67 E-value=1.3e-15 Score=159.29 Aligned_cols=201 Identities=17% Similarity=0.085 Sum_probs=116.1
Q ss_pred ccCccccceEEeccCCCccccCCccCCCCccEEEeccCCCCcccccccccCCCCCCCeEEEeecCCCccccCccCCCCcc
Q 048004 611 SLSLNSLREIEIYKCSSLVSFPEVALPSKLKKIEIRECDALKSLPEAWMCGTNSSLEILSIQGCHSLTYIAGVQLPPSLK 690 (943)
Q Consensus 611 ~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~ 690 (943)
+..++++++++++++ .++.+|. ..+++++.|++++|......+..+ ..+++|++|++++|. ++.++.....++|+
T Consensus 6 ~~~l~~l~~l~~~~~-~l~~ip~-~~~~~l~~L~L~~N~l~~~~~~~~--~~l~~L~~L~L~~n~-l~~~~~~~~l~~L~ 80 (290)
T 1p9a_G 6 VSKVASHLEVNCDKR-NLTALPP-DLPKDTTILHLSENLLYTFSLATL--MPYTRLTQLNLDRAE-LTKLQVDGTLPVLG 80 (290)
T ss_dssp EECSTTCCEEECTTS-CCSSCCS-CCCTTCCEEECTTSCCSEEEGGGG--TTCTTCCEEECTTSC-CCEEECCSCCTTCC
T ss_pred ccccCCccEEECCCC-CCCcCCC-CCCCCCCEEEcCCCcCCccCHHHh--hcCCCCCEEECCCCc-cCcccCCCCCCcCC
Confidence 345566666666665 4455553 234567777777654332223333 566777777777765 23222211112222
Q ss_pred EEEeccCCCccccccccccccCCCCCCCeeeeeccCCcccccccCCCCCCcCeEeecCCCCceecCCCCCCCCCcceEee
Q 048004 691 RLEIDFCDNLRTLTVEEGIQSSSSSSSSSRSIWTCENLKFLPSGLHNLRQLQEIEIWECENLVSFPQGGLPCAKLSMLTV 770 (943)
Q Consensus 691 ~L~l~~c~~L~~l~~~~~~~~~~~~~L~~l~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 770 (943)
.|+++ ++ .++.+|..+..+++|++|++++|...+..+..+..+++|++|++
T Consensus 81 ~L~Ls----------------------------~N-~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L 131 (290)
T 1p9a_G 81 TLDLS----------------------------HN-QLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYL 131 (290)
T ss_dssp EEECC----------------------------SS-CCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEEC
T ss_pred EEECC----------------------------CC-cCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEEC
Confidence 22222 21 23344556666777777777777555544455667777777777
Q ss_pred cccCCCCccccccCCCCccceEEecCCCchhhhhhhhccccCCCCCcCEEEEeecCCCceecCCCccccCCCCCCCCccc
Q 048004 771 YGCERLKALPKGLHNLTNLHSLEIHGNTKIWKSMIEWGRGFHRFSSLRELKISRCDDDMVSFPPEDIRLGTTLPLPASLT 850 (943)
Q Consensus 771 ~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~~~~~~~~~~~~~~~l~~L~ 850 (943)
++|.+.+..+..+..+++|+.|++++|....... ..+..+++|++|++++| .+..+|...+ ..++|+
T Consensus 132 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~----~~~~~l~~L~~L~L~~N--~l~~ip~~~~-------~~~~L~ 198 (290)
T 1p9a_G 132 KGNELKTLPPGLLTPTPKLEKLSLANNNLTELPA----GLLNGLENLDTLLLQEN--SLYTIPKGFF-------GSHLLP 198 (290)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCT----TTTTTCTTCCEEECCSS--CCCCCCTTTT-------TTCCCS
T ss_pred CCCCCCccChhhcccccCCCEEECCCCcCCccCH----HHhcCcCCCCEEECCCC--cCCccChhhc-------ccccCC
Confidence 7776665555556777777777777776442211 12566777777777776 5556666553 445677
Q ss_pred eeeccCCC
Q 048004 851 SLEIGYFP 858 (943)
Q Consensus 851 ~L~l~~~~ 858 (943)
.|++++++
T Consensus 199 ~l~L~~Np 206 (290)
T 1p9a_G 199 FAFLHGNP 206 (290)
T ss_dssp EEECCSCC
T ss_pred eEEeCCCC
Confidence 77777754
No 79
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.66 E-value=2.1e-15 Score=156.42 Aligned_cols=113 Identities=19% Similarity=0.158 Sum_probs=76.4
Q ss_pred cCCCCCCcCeEeecCCCCceecCCCCCCCCCcceEeecccCCCCccccccCCCCccceEEecCCCchhhhhhhhccccCC
Q 048004 734 GLHNLRQLQEIEIWECENLVSFPQGGLPCAKLSMLTVYGCERLKALPKGLHNLTNLHSLEIHGNTKIWKSMIEWGRGFHR 813 (943)
Q Consensus 734 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~ 813 (943)
.+.++++|++|++++|...+..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|....... ..+..
T Consensus 104 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~----~~~~~ 179 (270)
T 2o6q_A 104 VFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPE----GAFDK 179 (270)
T ss_dssp TTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT----TTTTT
T ss_pred HcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeCh----hHhcc
Confidence 35567778888887776655555556677788888888876655544556777888888887776443211 12667
Q ss_pred CCCcCEEEEeecCCCceecCCCccccCCCCCCCCccceeeccCCC
Q 048004 814 FSSLRELKISRCDDDMVSFPPEDIRLGTTLPLPASLTSLEIGYFP 858 (943)
Q Consensus 814 l~~L~~L~ls~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 858 (943)
+++|++|++++| .+..++.+.+ ..+++|+.|++++|+
T Consensus 180 l~~L~~L~L~~N--~l~~~~~~~~------~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 180 LTELKTLKLDNN--QLKRVPEGAF------DSLEKLKMLQLQENP 216 (270)
T ss_dssp CTTCCEEECCSS--CCSCCCTTTT------TTCTTCCEEECCSSC
T ss_pred CCCcCEEECCCC--cCCcCCHHHh------ccccCCCEEEecCCC
Confidence 778888888876 5556665543 467778888887765
No 80
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.65 E-value=1.9e-15 Score=157.70 Aligned_cols=160 Identities=16% Similarity=0.105 Sum_probs=109.4
Q ss_pred cCCCCCCcCeEeecCCCCceecCCCCCCCCCcceEeecccCCCCccccccCCCCccceEEecCCCchhhhhhhhccccCC
Q 048004 734 GLHNLRQLQEIEIWECENLVSFPQGGLPCAKLSMLTVYGCERLKALPKGLHNLTNLHSLEIHGNTKIWKSMIEWGRGFHR 813 (943)
Q Consensus 734 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~ 813 (943)
.+.++++|++|++++|...+..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|...... .+..+..
T Consensus 71 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~---l~~~~~~ 147 (276)
T 2z62_A 71 AYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFK---LPEYFSN 147 (276)
T ss_dssp TTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCC---CCGGGGG
T ss_pred HccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceec---Cchhhcc
Confidence 4566778888888888766666666777888888888888776655556778888888888888644321 1233677
Q ss_pred CCCcCEEEEeecCCCceecCCCccccCCCCCCCCccc----eeeccCCCCCcccccccccCCCCCeEEEcCCCCCCCCCC
Q 048004 814 FSSLRELKISRCDDDMVSFPPEDIRLGTTLPLPASLT----SLEIGYFPNLERLSSSIVDLQNLTSLFLYHCPKLKYFPE 889 (943)
Q Consensus 814 l~~L~~L~ls~n~~~~~~~~~~~~~~~~~~~~l~~L~----~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~ 889 (943)
+++|++|++++| .+..++...+ ..+++|+ +|+++++ .++.++.......+|+.|++++|. ++.+|.
T Consensus 148 l~~L~~L~Ls~N--~l~~~~~~~~------~~l~~L~~l~l~L~ls~n-~l~~~~~~~~~~~~L~~L~L~~n~-l~~~~~ 217 (276)
T 2z62_A 148 LTNLEHLDLSSN--KIQSIYCTDL------RVLHQMPLLNLSLDLSLN-PMNFIQPGAFKEIRLKELALDTNQ-LKSVPD 217 (276)
T ss_dssp CTTCCEEECCSS--CCCEECGGGG------HHHHTCTTCCEEEECCSS-CCCEECTTSSCSCCEEEEECCSSC-CSCCCT
T ss_pred CCCCCEEECCCC--CCCcCCHHHh------hhhhhccccceeeecCCC-cccccCccccCCCcccEEECCCCc-eeecCH
Confidence 788888888886 5555554433 3344444 7778875 566666655555678888888754 777766
Q ss_pred CCC--CcccceeeecCCcc
Q 048004 890 KGL--PSSLLELIIYRCPL 906 (943)
Q Consensus 890 ~~~--~~~L~~L~i~~c~~ 906 (943)
..+ +++|+.|++++||.
T Consensus 218 ~~~~~l~~L~~L~l~~N~~ 236 (276)
T 2z62_A 218 GIFDRLTSLQKIWLHTNPW 236 (276)
T ss_dssp TTTTTCCSCCEEECCSSCB
T ss_pred hHhcccccccEEEccCCcc
Confidence 433 67888888887775
No 81
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.64 E-value=2.6e-15 Score=156.92 Aligned_cols=175 Identities=19% Similarity=0.129 Sum_probs=91.6
Q ss_pred ccccEEEeecCCCCCCCCccccCccccceEEeccCCCccccCCccCCCCccEEEeccCCCCcccccccccCCCCCCCeEE
Q 048004 591 CRLEYLTLSGCQGLVKLPQSSLSLNSLREIEIYKCSSLVSFPEVALPSKLKKIEIRECDALKSLPEAWMCGTNSSLEILS 670 (943)
Q Consensus 591 ~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~ 670 (943)
++++.|++++|......+..+..+++|++|++++| .++.++..+.+++|++|++++| .++.+|..+ ..+++|++|+
T Consensus 31 ~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~--~~l~~L~~L~ 106 (290)
T 1p9a_G 31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRA-ELTKLQVDGTLPVLGTLDLSHN-QLQSLPLLG--QTLPALTVLD 106 (290)
T ss_dssp TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTS-CCCEEECCSCCTTCCEEECCSS-CCSSCCCCT--TTCTTCCEEE
T ss_pred CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCC-ccCcccCCCCCCcCCEEECCCC-cCCcCchhh--ccCCCCCEEE
Confidence 35556666665554444555666677777777766 3444544455666777777664 344555543 5666777777
Q ss_pred EeecCCCccccCccCCCCccEEEeccCCCccccccccccccCCCCCCCeeeeeccCCcccccccCCCCCCcCeEeecCCC
Q 048004 671 IQGCHSLTYIAGVQLPPSLKRLEIDFCDNLRTLTVEEGIQSSSSSSSSSRSIWTCENLKFLPSGLHNLRQLQEIEIWECE 750 (943)
Q Consensus 671 l~~~~~l~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~~~L~~l~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~ 750 (943)
+++|.. +.++ |..+.++++|++|++++|.
T Consensus 107 l~~N~l-~~l~--------------------------------------------------~~~~~~l~~L~~L~L~~N~ 135 (290)
T 1p9a_G 107 VSFNRL-TSLP--------------------------------------------------LGALRGLGELQELYLKGNE 135 (290)
T ss_dssp CCSSCC-CCCC--------------------------------------------------SSTTTTCTTCCEEECTTSC
T ss_pred CCCCcC-cccC--------------------------------------------------HHHHcCCCCCCEEECCCCC
Confidence 776652 2111 1234445555555555554
Q ss_pred CceecCCCCCCCCCcceEeecccCCCCccccccCCCCccceEEecCCCchhhhhhhhccccCCCCCcCEEEEeec
Q 048004 751 NLVSFPQGGLPCAKLSMLTVYGCERLKALPKGLHNLTNLHSLEIHGNTKIWKSMIEWGRGFHRFSSLRELKISRC 825 (943)
Q Consensus 751 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~ls~n 825 (943)
..+..+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.... ++..+..+++|+.|++++|
T Consensus 136 l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~-----ip~~~~~~~~L~~l~L~~N 205 (290)
T 1p9a_G 136 LKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYT-----IPKGFFGSHLLPFAFLHGN 205 (290)
T ss_dssp CCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCC-----CCTTTTTTCCCSEEECCSC
T ss_pred CCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCc-----cChhhcccccCCeEEeCCC
Confidence 333333333445555555555555433333334555555555555554321 1222444455555555554
No 82
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.63 E-value=1.5e-15 Score=157.71 Aligned_cols=115 Identities=13% Similarity=-0.028 Sum_probs=63.0
Q ss_pred CCCCCCcCeEeecCCCCceecCCCCCCCCCcceEeecccCCCCccccccCCCCccceEEecCCCchhhhhhhhccccCCC
Q 048004 735 LHNLRQLQEIEIWECENLVSFPQGGLPCAKLSMLTVYGCERLKALPKGLHNLTNLHSLEIHGNTKIWKSMIEWGRGFHRF 814 (943)
Q Consensus 735 ~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l 814 (943)
+.++++|++|++++|...+..+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|...... +..+..+
T Consensus 129 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~----~~~~~~l 204 (272)
T 3rfs_A 129 FDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVP----DGVFDRL 204 (272)
T ss_dssp TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC----TTTTTTC
T ss_pred hccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccC----HHHHhCC
Confidence 455666666666666444333333455666666666666655544445566666666666666533211 1125566
Q ss_pred CCcCEEEEeecCCCceecCCCccccCCCCCCCCccceeeccCCCCCcccccccc
Q 048004 815 SSLRELKISRCDDDMVSFPPEDIRLGTTLPLPASLTSLEIGYFPNLERLSSSIV 868 (943)
Q Consensus 815 ~~L~~L~ls~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~ 868 (943)
++|++|++++|. + . ..+++|+.|+++.+.....+|.+++
T Consensus 205 ~~L~~L~l~~N~--~---~----------~~~~~l~~l~~~~n~~~g~ip~~~~ 243 (272)
T 3rfs_A 205 TSLQYIWLHDNP--W---D----------CTCPGIRYLSEWINKHSGVVRNSAG 243 (272)
T ss_dssp TTCCEEECCSSC--B---C----------CCTTTTHHHHHHHHHTGGGBBCTTS
T ss_pred cCCCEEEccCCC--c---c----------ccCcHHHHHHHHHHhCCCcccCccc
Confidence 666666666651 0 0 2344566666666555555554433
No 83
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.63 E-value=5.3e-15 Score=159.75 Aligned_cols=179 Identities=16% Similarity=0.101 Sum_probs=109.9
Q ss_pred ccccEEEeecCCCCCCCCccccCccccceEEeccCCCccccCC--ccCCCCccEEEeccCCCCcccccccccCCCCCCCe
Q 048004 591 CRLEYLTLSGCQGLVKLPQSSLSLNSLREIEIYKCSSLVSFPE--VALPSKLKKIEIRECDALKSLPEAWMCGTNSSLEI 668 (943)
Q Consensus 591 ~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~ 668 (943)
+++++|++++|......+..|.++++|++|++++|...+.++. +..+++++++.+.+++.+..++...+ ..+++|++
T Consensus 30 ~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f-~~l~~L~~ 108 (350)
T 4ay9_X 30 RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAF-QNLPNLQY 108 (350)
T ss_dssp TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSB-CCCTTCCE
T ss_pred CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhh-hhcccccc
Confidence 5788899988875443334688899999999999977777764 45677888777766677777766655 78889999
Q ss_pred EEEeecCCCccccCccCCCCccEEEeccCCCccccccccccccCCCCCCCeeeeeccCCcccccc-cCCCC-CCcCeEee
Q 048004 669 LSIQGCHSLTYIAGVQLPPSLKRLEIDFCDNLRTLTVEEGIQSSSSSSSSSRSIWTCENLKFLPS-GLHNL-RQLQEIEI 746 (943)
Q Consensus 669 L~l~~~~~l~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~~~L~~l~l~~~~~l~~lp~-~~~~l-~~L~~L~l 746 (943)
|++++|.. +.++...... ...+..+++.++..++.+|. .+..+ ..++.|++
T Consensus 109 L~l~~n~l-~~~~~~~~~~--------------------------~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L 161 (350)
T 4ay9_X 109 LLISNTGI-KHLPDVHKIH--------------------------SLQKVLLDIQDNINIHTIERNSFVGLSFESVILWL 161 (350)
T ss_dssp EEEEEECC-SSCCCCTTCC--------------------------BSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEEC
T ss_pred cccccccc-ccCCchhhcc--------------------------cchhhhhhhccccccccccccchhhcchhhhhhcc
Confidence 99998873 3333221111 01122233333333444432 23333 34666677
Q ss_pred cCCCCceecCCCCCCCCCcceEeecccCCCCcccc-ccCCCCccceEEecCCC
Q 048004 747 WECENLVSFPQGGLPCAKLSMLTVYGCERLKALPK-GLHNLTNLHSLEIHGNT 798 (943)
Q Consensus 747 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~l~~l~~L~~L~l~~n~ 798 (943)
++|. ++.+|...+...+|++|++++|+.++.+|. .+.++++|++|++++|.
T Consensus 162 ~~N~-i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~ 213 (350)
T 4ay9_X 162 NKNG-IQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTR 213 (350)
T ss_dssp CSSC-CCEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSC
T ss_pred cccc-ccCCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCC
Confidence 6663 344555555555666666666555555554 34666666666666664
No 84
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.62 E-value=7.3e-16 Score=162.99 Aligned_cols=58 Identities=10% Similarity=0.150 Sum_probs=39.0
Q ss_pred CCCCcceEEEeccCCCCCCcCcCCCCCCCccEEEEecCCCCCCCCCCCCCCCCCeeEEcccc
Q 048004 358 PHTNLEQFCIKGYGGMKFPTWLGDSLFSNLVTLEFEDCGMCTALPSVGQLPSLKHLTVRGMS 419 (943)
Q Consensus 358 ~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~l~~~~ 419 (943)
.+++|+.|++.++....++. +. .+++|+.|++++|.+.+.. .+..+++|+.|++++|+
T Consensus 171 ~l~~L~~L~l~~n~l~~~~~-l~--~l~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~l~~N~ 228 (308)
T 1h6u_A 171 NLSKLTTLKADDNKISDISP-LA--SLPNLIEVHLKNNQISDVS-PLANTSNLFIVTLTNQT 228 (308)
T ss_dssp TCTTCCEEECCSSCCCCCGG-GG--GCTTCCEEECTTSCCCBCG-GGTTCTTCCEEEEEEEE
T ss_pred CCCCCCEEECCCCccCcChh-hc--CCCCCCEEEccCCccCccc-cccCCCCCCEEEccCCe
Confidence 34455555555555555554 22 2688888888888876544 47788888888888874
No 85
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.60 E-value=3.3e-15 Score=158.54 Aligned_cols=159 Identities=14% Similarity=0.090 Sum_probs=104.0
Q ss_pred CCCCCcCeEeecCCCCceecCCCCCCCCCcceEeecccCCCCc--cc--cccCCCCccceEEecCCCchhhhhhhhcc-c
Q 048004 736 HNLRQLQEIEIWECENLVSFPQGGLPCAKLSMLTVYGCERLKA--LP--KGLHNLTNLHSLEIHGNTKIWKSMIEWGR-G 810 (943)
Q Consensus 736 ~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~--~~--~~l~~l~~L~~L~l~~n~~~~~~~~~~~~-~ 810 (943)
..+++|++|++++|...+..+..+..+++|++|++++|++.+. ++ ..+..+++|++|++++|...... ..+. .
T Consensus 142 ~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~--~~~~~l 219 (310)
T 4glp_A 142 WLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPT--GVCAAL 219 (310)
T ss_dssp TBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHH--HHHHHH
T ss_pred hhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchH--HHHHHH
Confidence 3567778888887776666666677777888888888776542 21 22357778888888888653211 1111 1
Q ss_pred cCCCCCcCEEEEeecCCCceec-CCCccccCCCCCCCCccceeeccCCCCCcccccccccCCCCCeEEEcCCCCCCCCCC
Q 048004 811 FHRFSSLRELKISRCDDDMVSF-PPEDIRLGTTLPLPASLTSLEIGYFPNLERLSSSIVDLQNLTSLFLYHCPKLKYFPE 889 (943)
Q Consensus 811 ~~~l~~L~~L~ls~n~~~~~~~-~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~ 889 (943)
+..+++|++|++++| .+..+ |.... ....+++|++|++++| .++.+|..+ +++|+.|++++| +++.+|.
T Consensus 220 ~~~l~~L~~L~Ls~N--~l~~~~p~~~~----~~~~~~~L~~L~Ls~N-~l~~lp~~~--~~~L~~L~Ls~N-~l~~~~~ 289 (310)
T 4glp_A 220 AAAGVQPHSLDLSHN--SLRATVNPSAP----RCMWSSALNSLNLSFA-GLEQVPKGL--PAKLRVLDLSSN-RLNRAPQ 289 (310)
T ss_dssp HHHTCCCSSEECTTS--CCCCCCCSCCS----SCCCCTTCCCEECCSS-CCCSCCSCC--CSCCSCEECCSC-CCCSCCC
T ss_pred HhcCCCCCEEECCCC--CCCccchhhHH----hccCcCcCCEEECCCC-CCCchhhhh--cCCCCEEECCCC-cCCCCch
Confidence 456788888888886 34443 54432 1122368888888885 566777655 378888888885 5666665
Q ss_pred CCCCcccceeeecCCcc
Q 048004 890 KGLPSSLLELIIYRCPL 906 (943)
Q Consensus 890 ~~~~~~L~~L~i~~c~~ 906 (943)
...+++|+.|++++|+.
T Consensus 290 ~~~l~~L~~L~L~~N~l 306 (310)
T 4glp_A 290 PDELPEVDNLTLDGNPF 306 (310)
T ss_dssp TTSCCCCSCEECSSTTT
T ss_pred hhhCCCccEEECcCCCC
Confidence 44568888888888875
No 86
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.60 E-value=1.6e-15 Score=157.42 Aligned_cols=204 Identities=15% Similarity=0.114 Sum_probs=126.3
Q ss_pred ccCccccceEEeccCCCccccCCccCCCCccEEEeccCCCCcccccccccCCCCCCCeEEEeecCCCccccCccCCCCcc
Q 048004 611 SLSLNSLREIEIYKCSSLVSFPEVALPSKLKKIEIRECDALKSLPEAWMCGTNSSLEILSIQGCHSLTYIAGVQLPPSLK 690 (943)
Q Consensus 611 ~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~ 690 (943)
...+++|+.|++++| .++.++.+..+++|++|++++|. +..++ .+ ..+++|++|++++|.. +.++
T Consensus 37 ~~~l~~L~~L~l~~~-~i~~~~~l~~l~~L~~L~l~~n~-l~~~~-~l--~~l~~L~~L~L~~n~l-~~~~--------- 101 (272)
T 3rfs_A 37 QNELNSIDQIIANNS-DIKSVQGIQYLPNVRYLALGGNK-LHDIS-AL--KELTNLTYLILTGNQL-QSLP--------- 101 (272)
T ss_dssp HHHHTTCCEEECTTS-CCCCCTTGGGCTTCCEEECTTSC-CCCCG-GG--TTCTTCCEEECTTSCC-CCCC---------
T ss_pred cccccceeeeeeCCC-CcccccccccCCCCcEEECCCCC-CCCch-hh--cCCCCCCEEECCCCcc-CccC---------
Confidence 446777888888776 45556666667777777777754 33333 22 4566666666666541 1110
Q ss_pred EEEeccCCCccccccccccccCCCCCCCeeeeeccCCcccccccCCCCCCcCeEeecCCCCceecCCCCCCCCCcceEee
Q 048004 691 RLEIDFCDNLRTLTVEEGIQSSSSSSSSSRSIWTCENLKFLPSGLHNLRQLQEIEIWECENLVSFPQGGLPCAKLSMLTV 770 (943)
Q Consensus 691 ~L~l~~c~~L~~l~~~~~~~~~~~~~L~~l~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 770 (943)
+..+.++++|++|++++|...+..+..+..+++|++|++
T Consensus 102 -----------------------------------------~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 140 (272)
T 3rfs_A 102 -----------------------------------------NGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNL 140 (272)
T ss_dssp -----------------------------------------TTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred -----------------------------------------hhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEEC
Confidence 233566788888888888666555555677788888888
Q ss_pred cccCCCCccccccCCCCccceEEecCCCchhhhhhhhccccCCCCCcCEEEEeecCCCceecCCCccccCCCCCCCCccc
Q 048004 771 YGCERLKALPKGLHNLTNLHSLEIHGNTKIWKSMIEWGRGFHRFSSLRELKISRCDDDMVSFPPEDIRLGTTLPLPASLT 850 (943)
Q Consensus 771 ~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~~~~~~~~~~~~~~~l~~L~ 850 (943)
++|.+.+..+..+..+++|+.|++++|...... +..+..+++|++|++++| .+..++.+.+ ..+++|+
T Consensus 141 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~----~~~~~~l~~L~~L~L~~N--~l~~~~~~~~------~~l~~L~ 208 (272)
T 3rfs_A 141 AHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLP----EGVFDKLTQLKDLRLYQN--QLKSVPDGVF------DRLTSLQ 208 (272)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC----TTTTTTCTTCCEEECCSS--CCSCCCTTTT------TTCTTCC
T ss_pred CCCccCccCHHHhccCccCCEEECCCCCcCccC----HHHhcCCccCCEEECCCC--cCCccCHHHH------hCCcCCC
Confidence 888776555556677888888888888644221 122567778888888776 4445554433 4567777
Q ss_pred eeeccCCCCCcccccccccCCCCCeEEEcCCCCCCCCCC
Q 048004 851 SLEIGYFPNLERLSSSIVDLQNLTSLFLYHCPKLKYFPE 889 (943)
Q Consensus 851 ~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~ 889 (943)
.|++++|+.. ..+++|+.|+++.+..-..+|.
T Consensus 209 ~L~l~~N~~~-------~~~~~l~~l~~~~n~~~g~ip~ 240 (272)
T 3rfs_A 209 YIWLHDNPWD-------CTCPGIRYLSEWINKHSGVVRN 240 (272)
T ss_dssp EEECCSSCBC-------CCTTTTHHHHHHHHHTGGGBBC
T ss_pred EEEccCCCcc-------ccCcHHHHHHHHHHhCCCcccC
Confidence 7777776422 3345566666655444344443
No 87
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.59 E-value=9.5e-15 Score=155.00 Aligned_cols=198 Identities=15% Similarity=0.101 Sum_probs=115.3
Q ss_pred ccccEEEeecCCCCCCCCccc--cCccccceEEeccCCCccccCC-----ccCCCCccEEEeccCCCCcccccccccCCC
Q 048004 591 CRLEYLTLSGCQGLVKLPQSS--LSLNSLREIEIYKCSSLVSFPE-----VALPSKLKKIEIRECDALKSLPEAWMCGTN 663 (943)
Q Consensus 591 ~~L~~L~l~~~~~l~~l~~~~--~~l~~L~~L~l~~~~~l~~~~~-----~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~ 663 (943)
++|++|++++|...+..|..+ ..+++|++|++++|......+. ...+++|++|++++|......+..+ ..+
T Consensus 91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~--~~l 168 (310)
T 4glp_A 91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQV--RAF 168 (310)
T ss_dssp SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSC--CCC
T ss_pred CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHh--ccC
Confidence 579999999998888888777 8899999999999966554332 2358899999999876544444444 688
Q ss_pred CCCCeEEEeecCCCcc--ccCccCCCCccEEEeccCCCccccccccccccCCCCCCCeeeeeccCCcccccc----cCCC
Q 048004 664 SSLEILSIQGCHSLTY--IAGVQLPPSLKRLEIDFCDNLRTLTVEEGIQSSSSSSSSSRSIWTCENLKFLPS----GLHN 737 (943)
Q Consensus 664 ~~L~~L~l~~~~~l~~--~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~~~L~~l~l~~~~~l~~lp~----~~~~ 737 (943)
++|++|++++|+..+. ++..... +.+++|+.|++++| .++.++. .+.+
T Consensus 169 ~~L~~L~Ls~N~l~~~~~~~~~~~~-------------------------~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~~ 222 (310)
T 4glp_A 169 PALTSLDLSDNPGLGERGLMAALCP-------------------------HKFPAIQNLALRNT-GMETPTGVCAALAAA 222 (310)
T ss_dssp TTCCEEECCSCTTCHHHHHHTTSCT-------------------------TSSCCCCSCBCCSS-CCCCHHHHHHHHHHH
T ss_pred CCCCEEECCCCCCccchhhhHHHhh-------------------------hcCCCCCEEECCCC-CCCchHHHHHHHHhc
Confidence 8999999999875432 1110000 01112222222222 1222222 1344
Q ss_pred CCCcCeEeecCCCCceecCCCCCCC---CCcceEeecccCCCCccccccCCCCccceEEecCCCchhhhhhhhccccCCC
Q 048004 738 LRQLQEIEIWECENLVSFPQGGLPC---AKLSMLTVYGCERLKALPKGLHNLTNLHSLEIHGNTKIWKSMIEWGRGFHRF 814 (943)
Q Consensus 738 l~~L~~L~l~~~~~~~~~~~~~~~l---~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l 814 (943)
+++|++|++++|...+..|..+..+ ++|++|++++|.+. .+|..+. ++|++|++++|..... + .+..+
T Consensus 223 l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-----~-~~~~l 293 (310)
T 4glp_A 223 GVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-----P-QPDEL 293 (310)
T ss_dssp TCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-----C-CTTSC
T ss_pred CCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-----c-hhhhC
Confidence 5666666666665555545544444 46666666666554 4454442 5666666666653321 1 13445
Q ss_pred CCcCEEEEeec
Q 048004 815 SSLRELKISRC 825 (943)
Q Consensus 815 ~~L~~L~ls~n 825 (943)
++|++|++++|
T Consensus 294 ~~L~~L~L~~N 304 (310)
T 4glp_A 294 PEVDNLTLDGN 304 (310)
T ss_dssp CCCSCEECSST
T ss_pred CCccEEECcCC
Confidence 55555555554
No 88
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.59 E-value=2.1e-16 Score=170.54 Aligned_cols=88 Identities=18% Similarity=0.314 Sum_probs=39.8
Q ss_pred CCCCCCcCeEeecCC-CCcee-cCCCCCCCC-CcceEeecccC--CC-CccccccCCCCccceEEecCCCchhhhhhhhc
Q 048004 735 LHNLRQLQEIEIWEC-ENLVS-FPQGGLPCA-KLSMLTVYGCE--RL-KALPKGLHNLTNLHSLEIHGNTKIWKSMIEWG 808 (943)
Q Consensus 735 ~~~l~~L~~L~l~~~-~~~~~-~~~~~~~l~-~L~~L~l~~~~--~~-~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~ 808 (943)
+.++++|++|++++| ...+. ++..+..++ +|++|++++|. .. +.+|..+..+++|++|++++|..+.....
T Consensus 164 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~--- 240 (336)
T 2ast_B 164 LSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCF--- 240 (336)
T ss_dssp HHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGG---
T ss_pred HhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHH---
Confidence 344555555555555 22221 233334445 55555555552 22 23344444555555555555542221111
Q ss_pred cccCCCCCcCEEEEeec
Q 048004 809 RGFHRFSSLRELKISRC 825 (943)
Q Consensus 809 ~~~~~l~~L~~L~ls~n 825 (943)
..+..+++|++|++++|
T Consensus 241 ~~l~~l~~L~~L~l~~~ 257 (336)
T 2ast_B 241 QEFFQLNYLQHLSLSRC 257 (336)
T ss_dssp GGGGGCTTCCEEECTTC
T ss_pred HHHhCCCCCCEeeCCCC
Confidence 12444555555555554
No 89
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.56 E-value=3.2e-14 Score=150.37 Aligned_cols=78 Identities=15% Similarity=0.209 Sum_probs=39.1
Q ss_pred ccccEEEeecCCCCCCCCccccCccccceEEeccCCCccccCCccCCCCccEEEeccCCCCcccccccccCCCCCCCeEE
Q 048004 591 CRLEYLTLSGCQGLVKLPQSSLSLNSLREIEIYKCSSLVSFPEVALPSKLKKIEIRECDALKSLPEAWMCGTNSSLEILS 670 (943)
Q Consensus 591 ~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~ 670 (943)
++|++|++++|.. ..++ .+..+++|++|++++| .++.++.+..+++|++|++++|. ++.++. + ..+++|++|+
T Consensus 41 ~~L~~L~l~~~~i-~~l~-~~~~l~~L~~L~L~~n-~i~~~~~~~~l~~L~~L~L~~n~-l~~~~~-~--~~l~~L~~L~ 113 (308)
T 1h6u_A 41 DGITTLSAFGTGV-TTIE-GVQYLNNLIGLELKDN-QITDLAPLKNLTKITELELSGNP-LKNVSA-I--AGLQSIKTLD 113 (308)
T ss_dssp HTCCEEECTTSCC-CCCT-TGGGCTTCCEEECCSS-CCCCCGGGTTCCSCCEEECCSCC-CSCCGG-G--TTCTTCCEEE
T ss_pred CCcCEEEeeCCCc-cCch-hhhccCCCCEEEccCC-cCCCChhHccCCCCCEEEccCCc-CCCchh-h--cCCCCCCEEE
Confidence 3555555555533 2233 3455566666666655 33333334455555566655543 333331 1 4555555555
Q ss_pred EeecC
Q 048004 671 IQGCH 675 (943)
Q Consensus 671 l~~~~ 675 (943)
+++|.
T Consensus 114 l~~n~ 118 (308)
T 1h6u_A 114 LTSTQ 118 (308)
T ss_dssp CTTSC
T ss_pred CCCCC
Confidence 55554
No 90
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.54 E-value=7.3e-14 Score=143.05 Aligned_cols=164 Identities=17% Similarity=0.194 Sum_probs=115.8
Q ss_pred CcccccccCCCCCCcCeEeecCCCCceecCCCCCCCCCcceEeecccCCCCccccccCCCCccceEEecCCCchhhhhhh
Q 048004 727 NLKFLPSGLHNLRQLQEIEIWECENLVSFPQGGLPCAKLSMLTVYGCERLKALPKGLHNLTNLHSLEIHGNTKIWKSMIE 806 (943)
Q Consensus 727 ~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~ 806 (943)
.++.+|..+. ++++.|++++|...+..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|......
T Consensus 25 ~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~--- 99 (251)
T 3m19_A 25 SLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLP--- 99 (251)
T ss_dssp CCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCC---
T ss_pred CccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccC---
Confidence 3445565553 57888888888766666666777788888888888777666666778888888888888644321
Q ss_pred hccccCCCCCcCEEEEeecCCCceecCCCccccCCCCCCCCccceeeccCCCCCccccc-ccccCCCCCeEEEcCCCCCC
Q 048004 807 WGRGFHRFSSLRELKISRCDDDMVSFPPEDIRLGTTLPLPASLTSLEIGYFPNLERLSS-SIVDLQNLTSLFLYHCPKLK 885 (943)
Q Consensus 807 ~~~~~~~l~~L~~L~ls~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~-~~~~l~~L~~L~l~~c~~l~ 885 (943)
+..+..+++|++|++++| .+..++.+.+ ..+++|++|++++| .++.+|. .+..+++|+.|++++| .++
T Consensus 100 -~~~~~~l~~L~~L~L~~N--~l~~~~~~~~------~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N-~l~ 168 (251)
T 3m19_A 100 -LGVFDHLTQLDKLYLGGN--QLKSLPSGVF------DRLTKLKELRLNTN-QLQSIPAGAFDKLTNLQTLSLSTN-QLQ 168 (251)
T ss_dssp -TTTTTTCTTCCEEECCSS--CCCCCCTTTT------TTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCS
T ss_pred -hhHhcccCCCCEEEcCCC--cCCCcChhHh------ccCCcccEEECcCC-cCCccCHHHcCcCcCCCEEECCCC-cCC
Confidence 123677788888888886 5666666544 56788888888885 5666665 4677888888888875 566
Q ss_pred CCCCCCC--CcccceeeecCCcc
Q 048004 886 YFPEKGL--PSSLLELIIYRCPL 906 (943)
Q Consensus 886 ~l~~~~~--~~~L~~L~i~~c~~ 906 (943)
.++...+ +++|+.|++++|+.
T Consensus 169 ~~~~~~~~~l~~L~~L~l~~N~~ 191 (251)
T 3m19_A 169 SVPHGAFDRLGKLQTITLFGNQF 191 (251)
T ss_dssp CCCTTTTTTCTTCCEEECCSCCB
T ss_pred ccCHHHHhCCCCCCEEEeeCCce
Confidence 6665433 57888888888876
No 91
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=99.54 E-value=2e-15 Score=172.74 Aligned_cols=100 Identities=15% Similarity=0.273 Sum_probs=83.8
Q ss_pred CCCcchhhhhcccCCCcchhhhhh-----------hhccCCCCceeChhhHHHHHHHc--CCccCCCCCCcHHHHHHHHH
Q 048004 2 RCRIIPALAVSYYYLPPTLKQCFA-----------HCSLLPKDYEFEEEEIILLWCAA--GFLDHKEDENPSEDLGRDFF 68 (943)
Q Consensus 2 ~~~i~~~L~lSY~~L~~~lk~cfl-----------~cslfpe~~~i~~~~Li~~wiae--G~i~~~~~~~~~~~~~~~~~ 68 (943)
.++|+++|++||++||.++|.||+ |||+||+|+.|+ |+.|+|+ ||+.......+++++++ |+
T Consensus 360 ~~~i~~~l~~Sy~~L~~~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~----i~~w~a~~~G~i~~~~~~~~~~~~~~-~l 434 (549)
T 2a5y_B 360 LVGVECITPYSYKSLAMALQRCVEVLSDEDRSALAFAVVMPPGVDIP----VKLWSCVIPVDICSNEEEQLDDEVAD-RL 434 (549)
T ss_dssp SSTTCCCSSSSSSSHHHHHHHHHHTSCHHHHHHTTGGGSSCTTCCEE----HHHHHHHSCC-------CCCTHHHHH-HH
T ss_pred HHHHHHHHhcccccccHHHHHHHhccchhhhhHhhheeeeCCCCeee----eeeeeeeccceeccCCCCCCHHHHHH-HH
Confidence 467999999999999999999999 999999999998 8999999 99987544677888888 99
Q ss_pred HHHHhCCccccccC-CCCceehhhHHHHHHHHhcccceE
Q 048004 69 KELCSRSFFQQSAT-DASLFVMHDLINDLARWAAGETYF 106 (943)
Q Consensus 69 ~~L~~~~ll~~~~~-~~~~~~mHdlv~dla~~i~~~~~~ 106 (943)
++|++|||++.... ....|+|||+|||+|+++++++++
T Consensus 435 ~~L~~rsLl~~~~~~~~~~~~mHdlv~~~a~~~~~~~~~ 473 (549)
T 2a5y_B 435 KRLSKRGALLSGKRMPVLTFKIDHIIHMFLKHVVDAQTI 473 (549)
T ss_dssp HHTTTBSSCSEEECSSSCEEECCHHHHHHHHTTSCTHHH
T ss_pred HHHHHcCCeeEecCCCceEEEeChHHHHHHHHHHHHHHH
Confidence 99999999998653 456799999999999999987653
No 92
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.53 E-value=8.9e-14 Score=142.40 Aligned_cols=111 Identities=15% Similarity=0.102 Sum_probs=54.8
Q ss_pred CCCCCCcCeEeecCCCCceecCCCCCCCCCcceEeecccCCCCccccccCCCCccceEEecCCCchhhhhhhhccccCCC
Q 048004 735 LHNLRQLQEIEIWECENLVSFPQGGLPCAKLSMLTVYGCERLKALPKGLHNLTNLHSLEIHGNTKIWKSMIEWGRGFHRF 814 (943)
Q Consensus 735 ~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l 814 (943)
+.++++|++|++++|...+..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|....... ..+..+
T Consensus 79 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~----~~~~~l 154 (251)
T 3m19_A 79 FDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPA----GAFDKL 154 (251)
T ss_dssp TTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT----TTTTTC
T ss_pred hccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCH----HHcCcC
Confidence 4455566666666654444333444555566666666655544333344555566666665554322111 124555
Q ss_pred CCcCEEEEeecCCCceecCCCccccCCCCCCCCccceeeccCC
Q 048004 815 SSLRELKISRCDDDMVSFPPEDIRLGTTLPLPASLTSLEIGYF 857 (943)
Q Consensus 815 ~~L~~L~ls~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 857 (943)
++|++|++++| .+..++.+.+ ..+++|++|++++|
T Consensus 155 ~~L~~L~L~~N--~l~~~~~~~~------~~l~~L~~L~l~~N 189 (251)
T 3m19_A 155 TNLQTLSLSTN--QLQSVPHGAF------DRLGKLQTITLFGN 189 (251)
T ss_dssp TTCCEEECCSS--CCSCCCTTTT------TTCTTCCEEECCSC
T ss_pred cCCCEEECCCC--cCCccCHHHH------hCCCCCCEEEeeCC
Confidence 55555555554 3334443322 34445555555554
No 93
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.53 E-value=4.8e-16 Score=167.69 Aligned_cols=208 Identities=15% Similarity=0.132 Sum_probs=134.8
Q ss_pred CC--CcccEEEecCccccccCccccCCCcccEEecCCCCCcc--cchhHhhcccCcEEecCCCcchhhchHhhccccccc
Q 048004 175 KP--QRLRAFSLRGYYIFELPDSVGDLRYLRYLNLCGTKIRT--LPESVNKLYNLHSLLLEDCDRLKKLCADMGNLAKLH 250 (943)
Q Consensus 175 ~l--~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~L~~n~i~~--lp~~i~~L~~L~~L~L~~~~~l~~lp~~~~~L~~L~ 250 (943)
.+ +++++|++++|.+...+..+..+++|++|+|++|.++. +|..+..+++|++|++++|......|..++++++|+
T Consensus 66 ~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~ 145 (336)
T 2ast_B 66 RLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLV 145 (336)
T ss_dssp HHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCS
T ss_pred hhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCC
Confidence 55 88999999999998887778889999999999999873 888889999999999999876667888899999999
Q ss_pred ccccCCCCccc--cCCcccCCccccccccceeeccCCCCCchhhhcccccCCeeeeccccccCCcccchhhhcCCCC-CC
Q 048004 251 HLKNSNTKSLE--EMPVGIGKLTSLQTLCNFVVGKGSGSGLRELKLLTHLHGTLNISKLENVKCVGDAMEAQMDGKK-NL 327 (943)
Q Consensus 251 ~L~l~~~~~~~--~~p~~i~~L~~L~~L~~~~~~~~~~~~l~~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~-~L 327 (943)
+|++++|..++ .+|..++.+++|++|+...+. .+ ....++..+..++ +|
T Consensus 146 ~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~-----------------------~l-----~~~~~~~~~~~l~~~L 197 (336)
T 2ast_B 146 RLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCF-----------------------DF-----TEKHVQVAVAHVSETI 197 (336)
T ss_dssp EEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCT-----------------------TC-----CHHHHHHHHHHSCTTC
T ss_pred EEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCC-----------------------Cc-----ChHHHHHHHHhcccCC
Confidence 99999994354 355557777777777221110 01 1112344455666 77
Q ss_pred CeEEEEeecCCCCCCCcchhcHHhhhccCCCCCCcceEEEeccCCCCCCcCcCCCCCCCccEEEEecCC-CCCC-CCCCC
Q 048004 328 KELSLKWTCSTDGSSSREAETEMGVLDMLKPHTNLEQFCIKGYGGMKFPTWLGDSLFSNLVTLEFEDCG-MCTA-LPSVG 405 (943)
Q Consensus 328 ~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~-~~~~-l~~l~ 405 (943)
+.|++++|... ... ..+|..+.. +++|+.|++++|. +... ++.+.
T Consensus 198 ~~L~l~~~~~~--------~~~-----------------------~~l~~~~~~--~~~L~~L~l~~~~~l~~~~~~~l~ 244 (336)
T 2ast_B 198 TQLNLSGYRKN--------LQK-----------------------SDLSTLVRR--CPNLVHLDLSDSVMLKNDCFQEFF 244 (336)
T ss_dssp CEEECCSCGGG--------SCH-----------------------HHHHHHHHH--CTTCSEEECTTCTTCCGGGGGGGG
T ss_pred CEEEeCCCccc--------CCH-----------------------HHHHHHHhh--CCCCCEEeCCCCCcCCHHHHHHHh
Confidence 77777653100 000 011222211 5677777777776 3322 33666
Q ss_pred CCCCCCeeEEccccCeeEeCccccCCCCCccceeecccc
Q 048004 406 QLPSLKHLTVRGMSRVKRLGSEFCGNDPPCLETLRFENM 444 (943)
Q Consensus 406 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 444 (943)
.+++|++|++++|..+........ ..+++|+.|++.++
T Consensus 245 ~l~~L~~L~l~~~~~~~~~~~~~l-~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 245 QLNYLQHLSLSRCYDIIPETLLEL-GEIPTLKTLQVFGI 282 (336)
T ss_dssp GCTTCCEEECTTCTTCCGGGGGGG-GGCTTCCEEECTTS
T ss_pred CCCCCCEeeCCCCCCCCHHHHHHH-hcCCCCCEEeccCc
Confidence 777777777777752221111011 12556666666654
No 94
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.52 E-value=2.2e-15 Score=165.64 Aligned_cols=36 Identities=14% Similarity=-0.041 Sum_probs=21.2
Q ss_pred ccccEEEeecCCCCC----CCCccccCccccceEEeccCC
Q 048004 591 CRLEYLTLSGCQGLV----KLPQSSLSLNSLREIEIYKCS 626 (943)
Q Consensus 591 ~~L~~L~l~~~~~l~----~l~~~~~~l~~L~~L~l~~~~ 626 (943)
++|++|++++|.... .++..+..+++|++|++++|.
T Consensus 94 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~ 133 (386)
T 2ca6_A 94 PKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNG 133 (386)
T ss_dssp TTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSC
T ss_pred CcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCC
Confidence 456666666665444 244455566666666666664
No 95
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.51 E-value=1.8e-15 Score=166.35 Aligned_cols=92 Identities=16% Similarity=0.157 Sum_probs=49.6
Q ss_pred cCCCCCCcCeEeecCCCCce-----ecCCCCCCCCCcceEeecccCCC----CccccccCCCCccceEEecCCCchhhhh
Q 048004 734 GLHNLRQLQEIEIWECENLV-----SFPQGGLPCAKLSMLTVYGCERL----KALPKGLHNLTNLHSLEIHGNTKIWKSM 804 (943)
Q Consensus 734 ~~~~l~~L~~L~l~~~~~~~-----~~~~~~~~l~~L~~L~l~~~~~~----~~~~~~l~~l~~L~~L~l~~n~~~~~~~ 804 (943)
.+..+++|++|++++|.... ..|..+..+++|++|++++|.+. +.+|..+..+++|++|+|++|.......
T Consensus 182 ~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~ 261 (386)
T 2ca6_A 182 TFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGA 261 (386)
T ss_dssp HHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHH
T ss_pred HHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhH
Confidence 34455666666666664431 23334555666666666666653 4455556666666666666665443322
Q ss_pred hhhcccc--CCCCCcCEEEEeec
Q 048004 805 IEWGRGF--HRFSSLRELKISRC 825 (943)
Q Consensus 805 ~~~~~~~--~~l~~L~~L~ls~n 825 (943)
..++..+ ..+++|++|+|++|
T Consensus 262 ~~l~~~l~~~~~~~L~~L~L~~n 284 (386)
T 2ca6_A 262 AAVVDAFSKLENIGLQTLRLQYN 284 (386)
T ss_dssp HHHHHHHHTCSSCCCCEEECCSS
T ss_pred HHHHHHHhhccCCCeEEEECcCC
Confidence 2222223 22555666666554
No 96
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.48 E-value=4.8e-15 Score=161.06 Aligned_cols=58 Identities=5% Similarity=-0.103 Sum_probs=28.5
Q ss_pred EEEcCCcCeeeeccccCCCCCccEEEEecccccchhhhhhhhhhhccC-CccEEeecCC
Q 048004 511 LHIGGCKKVVWRRPLKLRLPKLEELEIENMKEQTYIWKSHKELLQDIC-SLKRLTIDSC 568 (943)
Q Consensus 511 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~i~~~~~~~~~~l~-~L~~L~l~~~ 568 (943)
++++.|.+.+..+......++|+.|++++|.........-...+..++ +|++|++++|
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N 61 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGN 61 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSS
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCC
Confidence 455666666555554444455666666666543321111113334444 4555555554
No 97
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.48 E-value=9.3e-15 Score=158.78 Aligned_cols=39 Identities=8% Similarity=-0.002 Sum_probs=23.9
Q ss_pred CCcccEEEEcCCcCeeeec----cccCCCC-CccEEEEeccccc
Q 048004 505 LPALCKLHIGGCKKVVWRR----PLKLRLP-KLEELEIENMKEQ 543 (943)
Q Consensus 505 l~~L~~L~l~~~~~~~~~~----~~~~~l~-~L~~L~l~~~~~~ 543 (943)
.++|++|++++|.+..... ..+..++ +|++|++++|...
T Consensus 21 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~ 64 (362)
T 3goz_A 21 PHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLG 64 (362)
T ss_dssp CTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGG
T ss_pred CCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCC
Confidence 4447777777776655554 4455566 6777777766543
No 98
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.46 E-value=8.4e-14 Score=145.69 Aligned_cols=168 Identities=20% Similarity=0.244 Sum_probs=106.5
Q ss_pred CCCcccEEEecCccccccCccccCCCcccEEecCCCCCcccchhHhhcccCcEEecCCCcchhhchHhhccccccccccc
Q 048004 175 KPQRLRAFSLRGYYIFELPDSVGDLRYLRYLNLCGTKIRTLPESVNKLYNLHSLLLEDCDRLKKLCADMGNLAKLHHLKN 254 (943)
Q Consensus 175 ~l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~L~~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~~~~L~~L~~L~l 254 (943)
.+++|+.|++++|.+..+|. +..+++|++|+|++|.++.++. ++++++|++|++++| .+..+| .++.+++|++|++
T Consensus 44 ~l~~L~~L~l~~~~i~~~~~-~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n-~l~~~~-~l~~l~~L~~L~L 119 (291)
T 1h6t_A 44 ELNSIDQIIANNSDIKSVQG-IQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDEN-KVKDLS-SLKDLKKLKSLSL 119 (291)
T ss_dssp HHHTCCEEECTTSCCCCCTT-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSS-CCCCGG-GGTTCTTCCEEEC
T ss_pred hcCcccEEEccCCCcccChh-HhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCC-cCCCCh-hhccCCCCCEEEC
Confidence 55677777777777777753 6777778888888877777766 777778888888774 455555 4777777888888
Q ss_pred CCCCccccCCcccCCccccccccceeeccCCCCCchhhhcccccCCeeeeccccccCCcccchhhhcCCCCCCCeEEEEe
Q 048004 255 SNTKSLEEMPVGIGKLTSLQTLCNFVVGKGSGSGLRELKLLTHLHGTLNISKLENVKCVGDAMEAQMDGKKNLKELSLKW 334 (943)
Q Consensus 255 ~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~l~~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~ 334 (943)
++|. +..++ .++.+++|++|+...+ .+... ..+..+++|+.|++++
T Consensus 120 ~~n~-i~~~~-~l~~l~~L~~L~l~~n------------------------~l~~~--------~~l~~l~~L~~L~L~~ 165 (291)
T 1h6t_A 120 EHNG-ISDIN-GLVHLPQLESLYLGNN------------------------KITDI--------TVLSRLTKLDTLSLED 165 (291)
T ss_dssp TTSC-CCCCG-GGGGCTTCCEEECCSS------------------------CCCCC--------GGGGGCTTCSEEECCS
T ss_pred CCCc-CCCCh-hhcCCCCCCEEEccCC------------------------cCCcc--------hhhccCCCCCEEEccC
Confidence 7776 55542 4555555555522111 11000 1133344455555543
Q ss_pred ecCCCCCCCcchhcHHhhhccCCCCCCcceEEEeccCCCCCCcCcCCCCCCCccEEEEecCCCCCCCCCCCCCCCCCeeE
Q 048004 335 TCSTDGSSSREAETEMGVLDMLKPHTNLEQFCIKGYGGMKFPTWLGDSLFSNLVTLEFEDCGMCTALPSVGQLPSLKHLT 414 (943)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~ 414 (943)
+....++. +. .+++|+.|++++|.+.. ++.+..+++|+.|+
T Consensus 166 -----------------------------------N~l~~~~~-l~--~l~~L~~L~L~~N~i~~-l~~l~~l~~L~~L~ 206 (291)
T 1h6t_A 166 -----------------------------------NQISDIVP-LA--GLTKLQNLYLSKNHISD-LRALAGLKNLDVLE 206 (291)
T ss_dssp -----------------------------------SCCCCCGG-GT--TCTTCCEEECCSSCCCB-CGGGTTCTTCSEEE
T ss_pred -----------------------------------Cccccchh-hc--CCCccCEEECCCCcCCC-ChhhccCCCCCEEE
Confidence 33333333 22 26788888888887754 45678888888888
Q ss_pred Ecccc
Q 048004 415 VRGMS 419 (943)
Q Consensus 415 l~~~~ 419 (943)
+++|+
T Consensus 207 l~~n~ 211 (291)
T 1h6t_A 207 LFSQE 211 (291)
T ss_dssp EEEEE
T ss_pred CcCCc
Confidence 88874
No 99
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.40 E-value=1.8e-12 Score=128.49 Aligned_cols=118 Identities=13% Similarity=-0.014 Sum_probs=66.1
Q ss_pred CCCCCCcCeEeecCCCCceecCCCCCCCCCcceEeecccCCCCccccccCCCCccceEEecCCCchhhhhhhhccccCCC
Q 048004 735 LHNLRQLQEIEIWECENLVSFPQGGLPCAKLSMLTVYGCERLKALPKGLHNLTNLHSLEIHGNTKIWKSMIEWGRGFHRF 814 (943)
Q Consensus 735 ~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l 814 (943)
+.++++|++|++++|...+..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|...... +..+..+
T Consensus 72 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~----~~~~~~l 147 (208)
T 2o6s_A 72 FNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVP----DGVFDRL 147 (208)
T ss_dssp TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC----TTTTTTC
T ss_pred cCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeC----HHHhccC
Confidence 445666666666666444333333455666666666666655444444566666666666666533211 1125566
Q ss_pred CCcCEEEEeecCCCceecCCCccccCCCCCCCCccceeeccCCCCCcccccccccCC
Q 048004 815 SSLRELKISRCDDDMVSFPPEDIRLGTTLPLPASLTSLEIGYFPNLERLSSSIVDLQ 871 (943)
Q Consensus 815 ~~L~~L~ls~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~l~ 871 (943)
++|++|++++| .+ . ..+++|+.|+++.+...+.+|.+++.++
T Consensus 148 ~~L~~L~l~~N--~~---~----------~~~~~l~~L~~~~n~~~g~ip~~~~~l~ 189 (208)
T 2o6s_A 148 TSLQYIWLHDN--PW---D----------CTCPGIRYLSEWINKHSGVVRNSAGSVA 189 (208)
T ss_dssp TTCCEEECCSC--CB---C----------CCTTTTHHHHHHHHHCTTTBBCTTSSBC
T ss_pred CCccEEEecCC--Ce---e----------cCCCCHHHHHHHHHhCCceeeccCcccc
Confidence 66667776665 00 0 2345677777777665666775555443
No 100
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.40 E-value=1.3e-12 Score=148.22 Aligned_cols=73 Identities=26% Similarity=0.406 Sum_probs=47.9
Q ss_pred ccccEEEeecCCCCCCCCccccCccccceEEeccCCCccccCCccCCCCccEEEeccCCCCcccccccccCCCCCCCeEE
Q 048004 591 CRLEYLTLSGCQGLVKLPQSSLSLNSLREIEIYKCSSLVSFPEVALPSKLKKIEIRECDALKSLPEAWMCGTNSSLEILS 670 (943)
Q Consensus 591 ~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~ 670 (943)
.+|+.|++++|... .+|..+ +++|++|++++| .++.+| ..+++|++|++++|. ++.+|. + .. +|++|+
T Consensus 59 ~~L~~L~Ls~n~L~-~lp~~l--~~~L~~L~Ls~N-~l~~ip--~~l~~L~~L~Ls~N~-l~~ip~-l--~~--~L~~L~ 126 (571)
T 3cvr_A 59 NQFSELQLNRLNLS-SLPDNL--PPQITVLEITQN-ALISLP--ELPASLEYLDACDNR-LSTLPE-L--PA--SLKHLD 126 (571)
T ss_dssp TTCSEEECCSSCCS-CCCSCC--CTTCSEEECCSS-CCSCCC--CCCTTCCEEECCSSC-CSCCCC-C--CT--TCCEEE
T ss_pred CCccEEEeCCCCCC-ccCHhH--cCCCCEEECcCC-CCcccc--cccCCCCEEEccCCC-CCCcch-h--hc--CCCEEE
Confidence 37788888877644 466644 367888888877 445666 556777777777753 444665 3 22 677777
Q ss_pred EeecC
Q 048004 671 IQGCH 675 (943)
Q Consensus 671 l~~~~ 675 (943)
+++|.
T Consensus 127 Ls~N~ 131 (571)
T 3cvr_A 127 VDNNQ 131 (571)
T ss_dssp CCSSC
T ss_pred CCCCc
Confidence 77765
No 101
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.39 E-value=2.8e-12 Score=128.84 Aligned_cols=148 Identities=22% Similarity=0.221 Sum_probs=88.5
Q ss_pred CeEeecCCCCceecCCCCCCCCCcceEeecccCCCCccccccCCCCccceEEecCCCchhhhhhhhccccCCCCCcCEEE
Q 048004 742 QEIEIWECENLVSFPQGGLPCAKLSMLTVYGCERLKALPKGLHNLTNLHSLEIHGNTKIWKSMIEWGRGFHRFSSLRELK 821 (943)
Q Consensus 742 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~ 821 (943)
+.++.+++ .++.+|..+. ++|++|++++|.+.+..|..+..+++|++|++++|...... +..|..+++|++|+
T Consensus 22 ~~v~c~~~-~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~----~~~~~~l~~L~~L~ 94 (229)
T 3e6j_A 22 TTVDCRSK-RHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALP----VGVFDSLTQLTVLD 94 (229)
T ss_dssp TEEECTTS-CCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC----TTTTTTCTTCCEEE
T ss_pred CEeEccCC-CcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcC----hhhcccCCCcCEEE
Confidence 44555443 3455554433 46666666666665555556666666666666666532211 11245666666666
Q ss_pred EeecCCCceecCCCccccCCCCCCCCccceeeccCCCCCcccccccccCCCCCeEEEcCCCCCCCCCCCCC--Cccccee
Q 048004 822 ISRCDDDMVSFPPEDIRLGTTLPLPASLTSLEIGYFPNLERLSSSIVDLQNLTSLFLYHCPKLKYFPEKGL--PSSLLEL 899 (943)
Q Consensus 822 ls~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~--~~~L~~L 899 (943)
+++| .+..++...+ ..+++|++|++++| .++.+|..+..+++|+.|+++++ +++.++...+ +++|+.|
T Consensus 95 Ls~N--~l~~l~~~~~------~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L 164 (229)
T 3e6j_A 95 LGTN--QLTVLPSAVF------DRLVHLKELFMCCN-KLTELPRGIERLTHLTHLALDQN-QLKSIPHGAFDRLSSLTHA 164 (229)
T ss_dssp CCSS--CCCCCCTTTT------TTCTTCCEEECCSS-CCCSCCTTGGGCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEE
T ss_pred CCCC--cCCccChhHh------CcchhhCeEeccCC-cccccCcccccCCCCCEEECCCC-cCCccCHHHHhCCCCCCEE
Confidence 6665 4555554443 45666777777764 46677766777777777777774 5666665433 5677777
Q ss_pred eecCCcc
Q 048004 900 IIYRCPL 906 (943)
Q Consensus 900 ~i~~c~~ 906 (943)
++++||.
T Consensus 165 ~l~~N~~ 171 (229)
T 3e6j_A 165 YLFGNPW 171 (229)
T ss_dssp ECTTSCB
T ss_pred EeeCCCc
Confidence 7777775
No 102
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.39 E-value=1.3e-12 Score=127.93 Aligned_cols=151 Identities=19% Similarity=0.159 Sum_probs=89.8
Q ss_pred cCccccceEEeccCCCccccCCccCCCCccEEEeccCCCCcccccccccCCCCCCCeEEEeecCCCccccCccCCCCccE
Q 048004 612 LSLNSLREIEIYKCSSLVSFPEVALPSKLKKIEIRECDALKSLPEAWMCGTNSSLEILSIQGCHSLTYIAGVQLPPSLKR 691 (943)
Q Consensus 612 ~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~ 691 (943)
..+++|++|++++| .++.++.+..+++|++|++++| .++.++ .+ ..+++|++|++++|......
T Consensus 41 ~~l~~L~~L~l~~n-~i~~l~~l~~l~~L~~L~l~~n-~~~~~~-~l--~~l~~L~~L~l~~n~l~~~~----------- 104 (197)
T 4ezg_A 41 AQMNSLTYITLANI-NVTDLTGIEYAHNIKDLTINNI-HATNYN-PI--SGLSNLERLRIMGKDVTSDK----------- 104 (197)
T ss_dssp HHHHTCCEEEEESS-CCSCCTTGGGCTTCSEEEEESC-CCSCCG-GG--TTCTTCCEEEEECTTCBGGG-----------
T ss_pred hhcCCccEEeccCC-CccChHHHhcCCCCCEEEccCC-CCCcch-hh--hcCCCCCEEEeECCccCccc-----------
Confidence 34555666666655 3334555555666666666665 333333 22 56777888888776632111
Q ss_pred EEeccCCCccccccccccccCCCCCCCeeeeeccCCcccccccCCCCCCcCeEeecCCCCceecCCCCCCCCCcceEeec
Q 048004 692 LEIDFCDNLRTLTVEEGIQSSSSSSSSSRSIWTCENLKFLPSGLHNLRQLQEIEIWECENLVSFPQGGLPCAKLSMLTVY 771 (943)
Q Consensus 692 L~l~~c~~L~~l~~~~~~~~~~~~~L~~l~l~~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 771 (943)
|..+..+++|++|++++|...+..|..+..+++|++|+++
T Consensus 105 ----------------------------------------~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~ 144 (197)
T 4ezg_A 105 ----------------------------------------IPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLS 144 (197)
T ss_dssp ----------------------------------------SCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECC
T ss_pred ----------------------------------------ChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEcc
Confidence 2334456667777777766555555556666677777777
Q ss_pred ccCCCCccccccCCCCccceEEecCCCchhhhhhhhccccCCCCCcCEEEEeec
Q 048004 772 GCERLKALPKGLHNLTNLHSLEIHGNTKIWKSMIEWGRGFHRFSSLRELKISRC 825 (943)
Q Consensus 772 ~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~ls~n 825 (943)
+|...+.+| .+..+++|+.|++++|...... .+..+++|++|++++|
T Consensus 145 ~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~~------~l~~l~~L~~L~l~~N 191 (197)
T 4ezg_A 145 YNGAITDIM-PLKTLPELKSLNIQFDGVHDYR------GIEDFPKLNQLYAFSQ 191 (197)
T ss_dssp SCTBCCCCG-GGGGCSSCCEEECTTBCCCCCT------TGGGCSSCCEEEECBC
T ss_pred CCCCccccH-hhcCCCCCCEEECCCCCCcChH------HhccCCCCCEEEeeCc
Confidence 766445554 4666777777777777543311 2666777777777776
No 103
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.38 E-value=1.5e-12 Score=127.53 Aligned_cols=87 Identities=14% Similarity=0.171 Sum_probs=60.2
Q ss_pred cCCCCCCcCeEeecCCCCceecCCCCCCCCCcceEeecccCCCCccccccCCCCccceEEecCCCchhhhhhhhccccCC
Q 048004 734 GLHNLRQLQEIEIWECENLVSFPQGGLPCAKLSMLTVYGCERLKALPKGLHNLTNLHSLEIHGNTKIWKSMIEWGRGFHR 813 (943)
Q Consensus 734 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~ 813 (943)
.+..+++|++|++++|...+..+..+..+++|++|++++|.+.+..|..+..+++|++|++++|..+... + .+..
T Consensus 83 ~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~-~----~l~~ 157 (197)
T 4ezg_A 83 PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDI-M----PLKT 157 (197)
T ss_dssp GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCC-G----GGGG
T ss_pred hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcccc-H----hhcC
Confidence 3555777888888887766666777777778888888887776666677777777777777777623221 1 2666
Q ss_pred CCCcCEEEEeec
Q 048004 814 FSSLRELKISRC 825 (943)
Q Consensus 814 l~~L~~L~ls~n 825 (943)
+++|++|++++|
T Consensus 158 l~~L~~L~l~~n 169 (197)
T 4ezg_A 158 LPELKSLNIQFD 169 (197)
T ss_dssp CSSCCEEECTTB
T ss_pred CCCCCEEECCCC
Confidence 677777777765
No 104
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.38 E-value=1.7e-13 Score=140.86 Aligned_cols=166 Identities=19% Similarity=0.220 Sum_probs=94.1
Q ss_pred CCcccEEEecCccccccCccccCCCcccEEecCCCCCcccchhHhhcccCcEEecCCCcchhhchHhhcccccccccccC
Q 048004 176 PQRLRAFSLRGYYIFELPDSVGDLRYLRYLNLCGTKIRTLPESVNKLYNLHSLLLEDCDRLKKLCADMGNLAKLHHLKNS 255 (943)
Q Consensus 176 l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~L~~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~~~~L~~L~~L~l~ 255 (943)
+.++..++++++.++.++ .+..+++|++|++++|.++.+| .++.+++|++|++++| .+..+|. ++++++|++|+++
T Consensus 18 l~~l~~l~l~~~~i~~~~-~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N-~i~~~~~-l~~l~~L~~L~L~ 93 (263)
T 1xeu_A 18 LANAVKQNLGKQSVTDLV-SQKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHN-QISDLSP-LKDLTKLEELSVN 93 (263)
T ss_dssp HHHHHHHHHTCSCTTSEE-CHHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSS-CCCCCGG-GTTCSSCCEEECC
T ss_pred HHHHHHHHhcCCCccccc-chhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCC-ccCCChh-hccCCCCCEEECC
Confidence 444555556666665555 4556666666666666666665 4666666666666663 4444544 6666666666666
Q ss_pred CCCccccCCcccCCccccccccceeeccCCCCCchhhhcccccCCeeeeccccccCCcccchhhhcCCCCCCCeEEEEee
Q 048004 256 NTKSLEEMPVGIGKLTSLQTLCNFVVGKGSGSGLRELKLLTHLHGTLNISKLENVKCVGDAMEAQMDGKKNLKELSLKWT 335 (943)
Q Consensus 256 ~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~l~~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 335 (943)
+|. ++.+|.... ++|++|+.. -+.+... ..+..+++|+.|+++
T Consensus 94 ~N~-l~~l~~~~~--~~L~~L~L~------------------------~N~l~~~--------~~l~~l~~L~~L~Ls-- 136 (263)
T 1xeu_A 94 RNR-LKNLNGIPS--ACLSRLFLD------------------------NNELRDT--------DSLIHLKNLEILSIR-- 136 (263)
T ss_dssp SSC-CSCCTTCCC--SSCCEEECC------------------------SSCCSBS--------GGGTTCTTCCEEECT--
T ss_pred CCc-cCCcCcccc--CcccEEEcc------------------------CCccCCC--------hhhcCcccccEEECC--
Confidence 665 444443221 444444111 0001000 013334444444443
Q ss_pred cCCCCCCCcchhcHHhhhccCCCCCCcceEEEeccCCCCCCcCcCCCCCCCccEEEEecCCCCCCCCCCCCCCCCCeeEE
Q 048004 336 CSTDGSSSREAETEMGVLDMLKPHTNLEQFCIKGYGGMKFPTWLGDSLFSNLVTLEFEDCGMCTALPSVGQLPSLKHLTV 415 (943)
Q Consensus 336 ~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~l 415 (943)
++..+.+| .+.. +++|+.|++++|.+.+. +.+..+++|+.|++
T Consensus 137 ---------------------------------~N~i~~~~-~l~~--l~~L~~L~L~~N~i~~~-~~l~~l~~L~~L~l 179 (263)
T 1xeu_A 137 ---------------------------------NNKLKSIV-MLGF--LSKLEVLDLHGNEITNT-GGLTRLKKVNWIDL 179 (263)
T ss_dssp ---------------------------------TSCCCBCG-GGGG--CTTCCEEECTTSCCCBC-TTSTTCCCCCEEEE
T ss_pred ---------------------------------CCcCCCCh-HHcc--CCCCCEEECCCCcCcch-HHhccCCCCCEEeC
Confidence 33333333 2222 68899999999988665 77888999999999
Q ss_pred cccc
Q 048004 416 RGMS 419 (943)
Q Consensus 416 ~~~~ 419 (943)
++|+
T Consensus 180 ~~N~ 183 (263)
T 1xeu_A 180 TGQK 183 (263)
T ss_dssp EEEE
T ss_pred CCCc
Confidence 9884
No 105
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.38 E-value=2.5e-12 Score=134.48 Aligned_cols=81 Identities=21% Similarity=0.146 Sum_probs=48.4
Q ss_pred CCCCCCcCeEeecCCCCceecCCCCCCCCCcceEeecccCCCCccccccCCCCccceEEecCCCchhhhhhhhccccCCC
Q 048004 735 LHNLRQLQEIEIWECENLVSFPQGGLPCAKLSMLTVYGCERLKALPKGLHNLTNLHSLEIHGNTKIWKSMIEWGRGFHRF 814 (943)
Q Consensus 735 ~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l 814 (943)
+..+++|+.|++++|...+. ..+..+++|++|++++|.+.+..| +..+++|+.|++++|..... ..+..+
T Consensus 130 l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~l------~~l~~l 199 (291)
T 1h6t_A 130 LVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL------RALAGL 199 (291)
T ss_dssp GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC------GGGTTC
T ss_pred hcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCCC------hhhccC
Confidence 44566677777766644332 335556677777777765544333 66667777777777654321 115666
Q ss_pred CCcCEEEEeec
Q 048004 815 SSLRELKISRC 825 (943)
Q Consensus 815 ~~L~~L~ls~n 825 (943)
++|+.|++++|
T Consensus 200 ~~L~~L~l~~n 210 (291)
T 1h6t_A 200 KNLDVLELFSQ 210 (291)
T ss_dssp TTCSEEEEEEE
T ss_pred CCCCEEECcCC
Confidence 67777777665
No 106
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.38 E-value=5.2e-13 Score=151.41 Aligned_cols=59 Identities=8% Similarity=0.048 Sum_probs=38.8
Q ss_pred CCcceEEEeccCCCCCCcCcCCCCCCCc-------cEEEEecCCCCCCCCCCCCCCCCCeeEEccccCeeE
Q 048004 360 TNLEQFCIKGYGGMKFPTWLGDSLFSNL-------VTLEFEDCGMCTALPSVGQLPSLKHLTVRGMSRVKR 423 (943)
Q Consensus 360 ~~L~~L~l~~~~~~~~p~~~~~~~l~~L-------~~L~L~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~ 423 (943)
++|+.|++.++..+.+|. +. .+| +.|++++|.+....+.+..+++|+.|++++|+..+.
T Consensus 180 ~~L~~L~Ls~N~L~~lp~-~~----~~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l~~~ 245 (571)
T 3cvr_A 180 ESLEALDVSTNLLESLPA-VP----VRNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSSR 245 (571)
T ss_dssp TTCCEEECCSSCCSSCCC-CC------------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSSCCHH
T ss_pred CCCCEEECcCCCCCchhh-HH----HhhhcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCcCCCc
Confidence 566666777776667776 33 245 888888888765333566788888888888754443
No 107
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.38 E-value=1.2e-12 Score=130.66 Aligned_cols=139 Identities=23% Similarity=0.287 Sum_probs=67.6
Q ss_pred cccccccCCCCCCcCeEeecCCCCceecCCCCCCCCCcceEeecccCCCCccccccCCCCccceEEecCCCchhhhhhhh
Q 048004 728 LKFLPSGLHNLRQLQEIEIWECENLVSFPQGGLPCAKLSMLTVYGCERLKALPKGLHNLTNLHSLEIHGNTKIWKSMIEW 807 (943)
Q Consensus 728 l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~ 807 (943)
++.+|..+. ++|+.|++++|...+..+..+..+++|++|++++|.+.+..|..+.++++|++|++++|.
T Consensus 23 l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~--------- 91 (220)
T 2v9t_B 23 LTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK--------- 91 (220)
T ss_dssp CSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC---------
T ss_pred cCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc---------
Confidence 444444332 455555555554333333344445555555555555444444455555555555555554
Q ss_pred ccccCCCCCcCEEEEeecCCCceecCCCccccCCCCCCCCccceeeccCCCCCccc-ccccccCCCCCeEEEcCCCCCCC
Q 048004 808 GRGFHRFSSLRELKISRCDDDMVSFPPEDIRLGTTLPLPASLTSLEIGYFPNLERL-SSSIVDLQNLTSLFLYHCPKLKY 886 (943)
Q Consensus 808 ~~~~~~l~~L~~L~ls~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l-~~~~~~l~~L~~L~l~~c~~l~~ 886 (943)
+..+|.+.| ..+++|++|++++|. ++.+ |..+..+++|+.|+++++ .++.
T Consensus 92 ---------------------l~~l~~~~f------~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N-~l~~ 142 (220)
T 2v9t_B 92 ---------------------ITELPKSLF------EGLFSLQLLLLNANK-INCLRVDAFQDLHNLNLLSLYDN-KLQT 142 (220)
T ss_dssp ---------------------CCCCCTTTT------TTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCSC
T ss_pred ---------------------CCccCHhHc------cCCCCCCEEECCCCC-CCEeCHHHcCCCCCCCEEECCCC-cCCE
Confidence 334443332 344445555555432 3332 333455555666666553 3454
Q ss_pred CCCCCC--CcccceeeecCCcc
Q 048004 887 FPEKGL--PSSLLELIIYRCPL 906 (943)
Q Consensus 887 l~~~~~--~~~L~~L~i~~c~~ 906 (943)
++...+ +++|+.|++++||.
T Consensus 143 ~~~~~~~~l~~L~~L~L~~N~~ 164 (220)
T 2v9t_B 143 IAKGTFSPLRAIQTMHLAQNPF 164 (220)
T ss_dssp CCTTTTTTCTTCCEEECCSSCE
T ss_pred ECHHHHhCCCCCCEEEeCCCCc
Confidence 544322 45666666666665
No 108
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.38 E-value=4.5e-13 Score=153.89 Aligned_cols=168 Identities=20% Similarity=0.255 Sum_probs=105.8
Q ss_pred CCCcccEEEecCccccccCccccCCCcccEEecCCCCCcccchhHhhcccCcEEecCCCcchhhchHhhccccccccccc
Q 048004 175 KPQRLRAFSLRGYYIFELPDSVGDLRYLRYLNLCGTKIRTLPESVNKLYNLHSLLLEDCDRLKKLCADMGNLAKLHHLKN 254 (943)
Q Consensus 175 ~l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~L~~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~~~~L~~L~~L~l 254 (943)
.+++|+.|++++|.+..+| .+..+++|++|+|++|.++.+|. +..+++|+.|+|++| .+..+| .++.+++|++|++
T Consensus 41 ~L~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N-~l~~l~-~l~~l~~L~~L~L 116 (605)
T 1m9s_A 41 ELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDEN-KIKDLS-SLKDLKKLKSLSL 116 (605)
T ss_dssp HHTTCCCCBCTTCCCCCCT-TGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSS-CCCCCT-TSTTCTTCCEEEC
T ss_pred cCCCCCEEECcCCCCCCCh-HHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCC-CCCCCh-hhccCCCCCEEEe
Confidence 5566777777777777765 46777777777777777777765 777777777777774 455555 5777777777777
Q ss_pred CCCCccccCCcccCCccccccccceeeccCCCCCchhhhcccccCCeeeeccccccCCcccchhhhcCCCCCCCeEEEEe
Q 048004 255 SNTKSLEEMPVGIGKLTSLQTLCNFVVGKGSGSGLRELKLLTHLHGTLNISKLENVKCVGDAMEAQMDGKKNLKELSLKW 334 (943)
Q Consensus 255 ~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~l~~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~ 334 (943)
++|. +..+| .+..+++|+.|+... +.+... ..+..+++|+.|++++
T Consensus 117 s~N~-l~~l~-~l~~l~~L~~L~Ls~------------------------N~l~~l--------~~l~~l~~L~~L~Ls~ 162 (605)
T 1m9s_A 117 EHNG-ISDIN-GLVHLPQLESLYLGN------------------------NKITDI--------TVLSRLTKLDTLSLED 162 (605)
T ss_dssp TTSC-CCCCG-GGGGCTTCSEEECCS------------------------SCCCCC--------GGGGSCTTCSEEECCS
T ss_pred cCCC-CCCCc-cccCCCccCEEECCC------------------------CccCCc--------hhhcccCCCCEEECcC
Confidence 7776 55443 355555555552211 111100 1233444555555543
Q ss_pred ecCCCCCCCcchhcHHhhhccCCCCCCcceEEEeccCCCCCCcCcCCCCCCCccEEEEecCCCCCCCCCCCCCCCCCeeE
Q 048004 335 TCSTDGSSSREAETEMGVLDMLKPHTNLEQFCIKGYGGMKFPTWLGDSLFSNLVTLEFEDCGMCTALPSVGQLPSLKHLT 414 (943)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~ 414 (943)
+....++. +. .+++|+.|+|++|.+.. ++.+..+++|+.|+
T Consensus 163 -----------------------------------N~l~~~~~-l~--~l~~L~~L~Ls~N~i~~-l~~l~~l~~L~~L~ 203 (605)
T 1m9s_A 163 -----------------------------------NQISDIVP-LA--GLTKLQNLYLSKNHISD-LRALAGLKNLDVLE 203 (605)
T ss_dssp -----------------------------------SCCCCCGG-GT--TCTTCCEEECCSSCCCB-CGGGTTCTTCSEEE
T ss_pred -----------------------------------CcCCCchh-hc--cCCCCCEEECcCCCCCC-ChHHccCCCCCEEE
Confidence 33333333 22 26888888888887755 46778888888888
Q ss_pred Ecccc
Q 048004 415 VRGMS 419 (943)
Q Consensus 415 l~~~~ 419 (943)
+++|+
T Consensus 204 L~~N~ 208 (605)
T 1m9s_A 204 LFSQE 208 (605)
T ss_dssp CCSEE
T ss_pred ccCCc
Confidence 88874
No 109
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.36 E-value=4.1e-12 Score=126.65 Aligned_cols=133 Identities=13% Similarity=0.165 Sum_probs=108.9
Q ss_pred CCCCCCeeeeeccCCccccc-ccCCCCCCcCeEeecCCCCceecCCCCCCCCCcceEeecccCCCCccccccCCCCccce
Q 048004 713 SSSSSSSRSIWTCENLKFLP-SGLHNLRQLQEIEIWECENLVSFPQGGLPCAKLSMLTVYGCERLKALPKGLHNLTNLHS 791 (943)
Q Consensus 713 ~~~~L~~l~l~~~~~l~~lp-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~ 791 (943)
.+++++.|++.++. ++.++ ..+..+++|++|++++|...+..|..+..+++|++|++++|.+....+..+.++++|++
T Consensus 30 l~~~l~~L~l~~n~-i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~ 108 (220)
T 2v9t_B 30 LPETITEIRLEQNT-IKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQL 108 (220)
T ss_dssp CCTTCCEEECCSSC-CCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred cCcCCCEEECCCCc-CCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCE
Confidence 45789999999874 55555 47899999999999999888877889999999999999999887655556789999999
Q ss_pred EEecCCCchhhhhhhhccccCCCCCcCEEEEeecCCCceecCCCccccCCCCCCCCccceeeccCCC
Q 048004 792 LEIHGNTKIWKSMIEWGRGFHRFSSLRELKISRCDDDMVSFPPEDIRLGTTLPLPASLTSLEIGYFP 858 (943)
Q Consensus 792 L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 858 (943)
|++++|...... +..|..+++|++|++++| .+..++.+.+ ..+++|++|++++++
T Consensus 109 L~L~~N~l~~~~----~~~~~~l~~L~~L~L~~N--~l~~~~~~~~------~~l~~L~~L~L~~N~ 163 (220)
T 2v9t_B 109 LLLNANKINCLR----VDAFQDLHNLNLLSLYDN--KLQTIAKGTF------SPLRAIQTMHLAQNP 163 (220)
T ss_dssp EECCSSCCCCCC----TTTTTTCTTCCEEECCSS--CCSCCCTTTT------TTCTTCCEEECCSSC
T ss_pred EECCCCCCCEeC----HHHcCCCCCCCEEECCCC--cCCEECHHHH------hCCCCCCEEEeCCCC
Confidence 999999755432 234888999999999998 6777776554 568889999999875
No 110
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.36 E-value=1.8e-12 Score=140.39 Aligned_cols=164 Identities=18% Similarity=0.103 Sum_probs=120.6
Q ss_pred CcccccccCCCCCCcCeEeecCCCCceecCCCCC-CCCCcceEeecccCCCCccccccCCCCccceEEecCCCchhhhhh
Q 048004 727 NLKFLPSGLHNLRQLQEIEIWECENLVSFPQGGL-PCAKLSMLTVYGCERLKALPKGLHNLTNLHSLEIHGNTKIWKSMI 805 (943)
Q Consensus 727 ~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~ 805 (943)
.++.+|..+ .+.++.|++++|...+..+..+. .+++|++|++++|.+.+..+..+.++++|++|+|++|......
T Consensus 29 ~l~~iP~~~--~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~-- 104 (361)
T 2xot_A 29 QLPNVPQSL--PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLD-- 104 (361)
T ss_dssp CCSSCCSSC--CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEEC--
T ss_pred CcCccCccC--CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCC--
Confidence 455566655 34688899999866655555555 7889999999998887666677889999999999998754321
Q ss_pred hhccccCCCCCcCEEEEeecCCCceecCCCccccCCCCCCCCccceeeccCCCCCccccccc----ccCCCCCeEEEcCC
Q 048004 806 EWGRGFHRFSSLRELKISRCDDDMVSFPPEDIRLGTTLPLPASLTSLEIGYFPNLERLSSSI----VDLQNLTSLFLYHC 881 (943)
Q Consensus 806 ~~~~~~~~l~~L~~L~ls~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~----~~l~~L~~L~l~~c 881 (943)
+..|..+++|++|+|++| .+..++...| ..+++|++|++++| .++.+|..+ ..+++|+.|+++++
T Consensus 105 --~~~~~~l~~L~~L~L~~N--~i~~~~~~~~------~~l~~L~~L~L~~N-~l~~l~~~~~~~~~~l~~L~~L~L~~N 173 (361)
T 2xot_A 105 --EFLFSDLQALEVLLLYNN--HIVVVDRNAF------EDMAQLQKLYLSQN-QISRFPVELIKDGNKLPKLMLLDLSSN 173 (361)
T ss_dssp --TTTTTTCTTCCEEECCSS--CCCEECTTTT------TTCTTCCEEECCSS-CCCSCCGGGTC----CTTCCEEECCSS
T ss_pred --HHHhCCCcCCCEEECCCC--cccEECHHHh------CCcccCCEEECCCC-cCCeeCHHHhcCcccCCcCCEEECCCC
Confidence 123788899999999987 5666655544 67889999999995 677787654 46899999999984
Q ss_pred CCCCCCCCCCC--Ccc--cceeeecCCcc
Q 048004 882 PKLKYFPEKGL--PSS--LLELIIYRCPL 906 (943)
Q Consensus 882 ~~l~~l~~~~~--~~~--L~~L~i~~c~~ 906 (943)
.++.+|...+ ++. |+.|++++||.
T Consensus 174 -~l~~l~~~~~~~l~~~~l~~l~l~~N~~ 201 (361)
T 2xot_A 174 -KLKKLPLTDLQKLPAWVKNGLYLHNNPL 201 (361)
T ss_dssp -CCCCCCHHHHHHSCHHHHTTEECCSSCE
T ss_pred -CCCccCHHHhhhccHhhcceEEecCCCc
Confidence 6777775322 333 58899999886
No 111
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.34 E-value=4.4e-12 Score=125.64 Aligned_cols=149 Identities=15% Similarity=0.064 Sum_probs=86.4
Q ss_pred CCCcCeEeecCCCCceecCCCCCCCCCcceEeecccCCCCccccccCCCCccceEEecCCCchhhhhhhhccccCCCCCc
Q 048004 738 LRQLQEIEIWECENLVSFPQGGLPCAKLSMLTVYGCERLKALPKGLHNLTNLHSLEIHGNTKIWKSMIEWGRGFHRFSSL 817 (943)
Q Consensus 738 l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L 817 (943)
.++|++|++++|...+..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|...... +..+..+++|
T Consensus 27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~----~~~~~~l~~L 102 (208)
T 2o6s_A 27 PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLP----NGVFDKLTQL 102 (208)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC----TTTTTTCTTC
T ss_pred CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccC----HhHhcCccCC
Confidence 346777777776554433334556677777777776665444444566777777777776543211 1125666777
Q ss_pred CEEEEeecCCCceecCCCccccCCCCCCCCccceeeccCCCCCcccccc-cccCCCCCeEEEcCCCCCCCCCCCCCCccc
Q 048004 818 RELKISRCDDDMVSFPPEDIRLGTTLPLPASLTSLEIGYFPNLERLSSS-IVDLQNLTSLFLYHCPKLKYFPEKGLPSSL 896 (943)
Q Consensus 818 ~~L~ls~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~-~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L 896 (943)
++|++++| .+..++.+.+ ..+++|++|++++| .++.++.. +..+++|+.|++++++.... +++|
T Consensus 103 ~~L~L~~N--~l~~~~~~~~------~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~~~~------~~~l 167 (208)
T 2o6s_A 103 KELALNTN--QLQSLPDGVF------DKLTQLKDLRLYQN-QLKSVPDGVFDRLTSLQYIWLHDNPWDCT------CPGI 167 (208)
T ss_dssp CEEECCSS--CCCCCCTTTT------TTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSCCBCCC------TTTT
T ss_pred CEEEcCCC--cCcccCHhHh------ccCCcCCEEECCCC-ccceeCHHHhccCCCccEEEecCCCeecC------CCCH
Confidence 77777765 4555554433 45667777777775 34555543 56667777777777643322 2355
Q ss_pred ceeeecCCc
Q 048004 897 LELIIYRCP 905 (943)
Q Consensus 897 ~~L~i~~c~ 905 (943)
+.|+++.|.
T Consensus 168 ~~L~~~~n~ 176 (208)
T 2o6s_A 168 RYLSEWINK 176 (208)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 555555443
No 112
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.33 E-value=7.9e-12 Score=125.54 Aligned_cols=141 Identities=18% Similarity=0.153 Sum_probs=108.1
Q ss_pred CcccccccCCCCCCcCeEeecCCCCceecCCCCCCCCCcceEeecccCCCCccccccCCCCccceEEecCCCchhhhhhh
Q 048004 727 NLKFLPSGLHNLRQLQEIEIWECENLVSFPQGGLPCAKLSMLTVYGCERLKALPKGLHNLTNLHSLEIHGNTKIWKSMIE 806 (943)
Q Consensus 727 ~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~ 806 (943)
.++.+|..+ .++|++|++++|...+..|..+..+++|++|++++|.+....+..+..+++|+.|++++|......
T Consensus 30 ~l~~ip~~~--~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~--- 104 (229)
T 3e6j_A 30 RHASVPAGI--PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLP--- 104 (229)
T ss_dssp CCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC---
T ss_pred CcCccCCCC--CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccC---
Confidence 455666655 388999999998877777777888899999999998875554556788999999999998654321
Q ss_pred hccccCCCCCcCEEEEeecCCCceecCCCccccCCCCCCCCccceeeccCCCCCccccc-ccccCCCCCeEEEcCCCC
Q 048004 807 WGRGFHRFSSLRELKISRCDDDMVSFPPEDIRLGTTLPLPASLTSLEIGYFPNLERLSS-SIVDLQNLTSLFLYHCPK 883 (943)
Q Consensus 807 ~~~~~~~l~~L~~L~ls~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~-~~~~l~~L~~L~l~~c~~ 883 (943)
+..+..+++|++|++++| .+..+|... ..+++|++|++++| .++.++. .+..+++|+.|++++++.
T Consensus 105 -~~~~~~l~~L~~L~Ls~N--~l~~lp~~~-------~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~ 171 (229)
T 3e6j_A 105 -SAVFDRLVHLKELFMCCN--KLTELPRGI-------ERLTHLTHLALDQN-QLKSIPHGAFDRLSSLTHAYLFGNPW 171 (229)
T ss_dssp -TTTTTTCTTCCEEECCSS--CCCSCCTTG-------GGCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECTTSCB
T ss_pred -hhHhCcchhhCeEeccCC--cccccCccc-------ccCCCCCEEECCCC-cCCccCHHHHhCCCCCCEEEeeCCCc
Confidence 122678899999999987 566777655 57889999999986 5677764 467889999999998764
No 113
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.32 E-value=5.6e-12 Score=136.58 Aligned_cols=88 Identities=13% Similarity=0.099 Sum_probs=50.1
Q ss_pred cCCCCCCcCeEeecCCCCceecCCCCCCCCCcceEeecccCCCCcccccc---CCCCccceEEecCCCchhhhhhhhccc
Q 048004 734 GLHNLRQLQEIEIWECENLVSFPQGGLPCAKLSMLTVYGCERLKALPKGL---HNLTNLHSLEIHGNTKIWKSMIEWGRG 810 (943)
Q Consensus 734 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l---~~l~~L~~L~l~~n~~~~~~~~~~~~~ 810 (943)
.+.++++|++|++++|......|..+..+++|+.|++++|.+.+..+..+ ..+++|+.|+|++|........ .
T Consensus 107 ~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~----~ 182 (361)
T 2xot_A 107 LFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLT----D 182 (361)
T ss_dssp TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHH----H
T ss_pred HhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHH----H
Confidence 35566777777777776655556666667777777777766544322233 4566777777777654432211 1
Q ss_pred cCCCCC--cCEEEEeec
Q 048004 811 FHRFSS--LRELKISRC 825 (943)
Q Consensus 811 ~~~l~~--L~~L~ls~n 825 (943)
+..++. |+.|++++|
T Consensus 183 ~~~l~~~~l~~l~l~~N 199 (361)
T 2xot_A 183 LQKLPAWVKNGLYLHNN 199 (361)
T ss_dssp HHHSCHHHHTTEECCSS
T ss_pred hhhccHhhcceEEecCC
Confidence 344444 366666665
No 114
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.32 E-value=8.8e-12 Score=143.16 Aligned_cols=81 Identities=21% Similarity=0.146 Sum_probs=42.7
Q ss_pred CCCCCCcCeEeecCCCCceecCCCCCCCCCcceEeecccCCCCccccccCCCCccceEEecCCCchhhhhhhhccccCCC
Q 048004 735 LHNLRQLQEIEIWECENLVSFPQGGLPCAKLSMLTVYGCERLKALPKGLHNLTNLHSLEIHGNTKIWKSMIEWGRGFHRF 814 (943)
Q Consensus 735 ~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l 814 (943)
+..+++|+.|+|++|...+. ..+..+++|+.|+|++|.+.+..| +..+++|+.|+|++|..... ..+..+
T Consensus 127 l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l------~~l~~l 196 (605)
T 1m9s_A 127 LVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL------RALAGL 196 (605)
T ss_dssp GGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC------GGGTTC
T ss_pred ccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCCC------hHHccC
Confidence 44455566666665543332 234455566666666655544333 55566666666666643321 125555
Q ss_pred CCcCEEEEeec
Q 048004 815 SSLRELKISRC 825 (943)
Q Consensus 815 ~~L~~L~ls~n 825 (943)
++|+.|+|++|
T Consensus 197 ~~L~~L~L~~N 207 (605)
T 1m9s_A 197 KNLDVLELFSQ 207 (605)
T ss_dssp TTCSEEECCSE
T ss_pred CCCCEEEccCC
Confidence 66666666655
No 115
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.31 E-value=3.8e-12 Score=126.87 Aligned_cols=92 Identities=12% Similarity=0.065 Sum_probs=41.8
Q ss_pred cccccccCCCCCCcCeEeecCCCCceecCC-CCCCCCCcceEeecccCCCCccccccCCCCccceEEecCCCchhhhhhh
Q 048004 728 LKFLPSGLHNLRQLQEIEIWECENLVSFPQ-GGLPCAKLSMLTVYGCERLKALPKGLHNLTNLHSLEIHGNTKIWKSMIE 806 (943)
Q Consensus 728 l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~ 806 (943)
++.+|..+ .+.+++|++++|...+..+. .+..+++|++|++++|.+.+..+..+.++++|++|++++|.......
T Consensus 23 l~~iP~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~-- 98 (220)
T 2v70_A 23 LNKIPEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQH-- 98 (220)
T ss_dssp CSSCCSCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCG--
T ss_pred cccCccCC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCH--
Confidence 34444433 22345555555543333232 23445555555555555444434445555555555555554322111
Q ss_pred hccccCCCCCcCEEEEeec
Q 048004 807 WGRGFHRFSSLRELKISRC 825 (943)
Q Consensus 807 ~~~~~~~l~~L~~L~ls~n 825 (943)
..|..+++|++|++++|
T Consensus 99 --~~~~~l~~L~~L~Ls~N 115 (220)
T 2v70_A 99 --KMFKGLESLKTLMLRSN 115 (220)
T ss_dssp --GGGTTCSSCCEEECTTS
T ss_pred --hHhcCCcCCCEEECCCC
Confidence 11444555555555554
No 116
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.29 E-value=1.7e-11 Score=122.05 Aligned_cols=105 Identities=15% Similarity=0.091 Sum_probs=48.4
Q ss_pred CCCeeeeeccCCcccc-c-ccCCCCCCcCeEeecCCCCceecCCCCCCCCCcceEeecccCCCCccccccCCCCccceEE
Q 048004 716 SSSSRSIWTCENLKFL-P-SGLHNLRQLQEIEIWECENLVSFPQGGLPCAKLSMLTVYGCERLKALPKGLHNLTNLHSLE 793 (943)
Q Consensus 716 ~L~~l~l~~~~~l~~l-p-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ 793 (943)
.++.|+++++. ++.+ | ..+..+++|++|++++|...+..+..+..+++|++|++++|.+.+..+..+.++++|++|+
T Consensus 33 ~~~~L~L~~N~-l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 111 (220)
T 2v70_A 33 YTAELRLNNNE-FTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLM 111 (220)
T ss_dssp TCSEEECCSSC-CCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEE
T ss_pred CCCEEEcCCCc-CCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEE
Confidence 34455554432 3333 2 1244555555555555544333333444555555555555555444444455555555555
Q ss_pred ecCCCchhhhhhhhccccCCCCCcCEEEEeec
Q 048004 794 IHGNTKIWKSMIEWGRGFHRFSSLRELKISRC 825 (943)
Q Consensus 794 l~~n~~~~~~~~~~~~~~~~l~~L~~L~ls~n 825 (943)
+++|...... +..+..+++|++|++++|
T Consensus 112 Ls~N~l~~~~----~~~~~~l~~L~~L~L~~N 139 (220)
T 2v70_A 112 LRSNRITCVG----NDSFIGLSSVRLLSLYDN 139 (220)
T ss_dssp CTTSCCCCBC----TTSSTTCTTCSEEECTTS
T ss_pred CCCCcCCeEC----HhHcCCCccCCEEECCCC
Confidence 5555432211 122444555555555554
No 117
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.25 E-value=1e-11 Score=115.41 Aligned_cols=122 Identities=17% Similarity=0.139 Sum_probs=97.9
Q ss_pred CCcceeeeecccCCCCCCCC-CCccccccCCCcccEEEecCccccccCccccCCCcccEEecCCCCCcc-cchhHhhccc
Q 048004 147 QHLRTFLPVMLTNSRPGFLA-PSILPKLLKPQRLRAFSLRGYYIFELPDSVGDLRYLRYLNLCGTKIRT-LPESVNKLYN 224 (943)
Q Consensus 147 ~~Lr~L~~~~~~~~~~~~~~-~~~~~~~~~l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~L~~n~i~~-lp~~i~~L~~ 224 (943)
++++.|.+.... +. ..++..+..+++|++|++++|.++.+ ..++.+++|++|++++|.++. +|..++.+++
T Consensus 17 ~~l~~L~l~~n~------l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~ 89 (149)
T 2je0_A 17 SDVKELVLDNSR------SNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPN 89 (149)
T ss_dssp GGCSEEECTTCB------CBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTT
T ss_pred ccCeEEEccCCc------CChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCC
Confidence 566777554432 22 23444334889999999999999888 778999999999999999997 8888888999
Q ss_pred CcEEecCCCcchhhch--HhhcccccccccccCCCCccccCCc----ccCCcccccccc
Q 048004 225 LHSLLLEDCDRLKKLC--ADMGNLAKLHHLKNSNTKSLEEMPV----GIGKLTSLQTLC 277 (943)
Q Consensus 225 L~~L~L~~~~~l~~lp--~~~~~L~~L~~L~l~~~~~~~~~p~----~i~~L~~L~~L~ 277 (943)
|++|++++| .+..+| ..++.+++|++|++++|. +..+|. .++.+++|+.|+
T Consensus 90 L~~L~ls~N-~i~~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~ 146 (149)
T 2je0_A 90 LTHLNLSGN-KIKDLSTIEPLKKLENLKSLDLFNCE-VTNLNDYRENVFKLLPQLTYLD 146 (149)
T ss_dssp CCEEECTTS-CCCSHHHHGGGGGCTTCCEEECTTCG-GGGSTTHHHHHHHHCTTCCEET
T ss_pred CCEEECCCC-cCCChHHHHHHhhCCCCCEEeCcCCc-ccchHHHHHHHHHHCCCccccc
Confidence 999999996 455554 779999999999999998 777776 488888888884
No 118
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.23 E-value=2.2e-13 Score=155.53 Aligned_cols=78 Identities=13% Similarity=0.049 Sum_probs=49.2
Q ss_pred CCCcceEEEeccCCCCCCcCcCCCCCCCccEEEEecCCCCCCC-C-CCCCCCCCCeeEEccccCeeEeCccccC--CCCC
Q 048004 359 HTNLEQFCIKGYGGMKFPTWLGDSLFSNLVTLEFEDCGMCTAL-P-SVGQLPSLKHLTVRGMSRVKRLGSEFCG--NDPP 434 (943)
Q Consensus 359 ~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l-~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~--~~~~ 434 (943)
+++|+.|+++++..+.+| .+.. +++|+.|+|++|.+.+.. | .++.+++|+.|++++|.... .+..... ..+|
T Consensus 485 l~~L~~L~Ls~N~l~~lp-~l~~--l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~-~~~~~~~l~~~lp 560 (567)
T 1dce_A 485 LRCLEVLQASDNALENVD-GVAN--LPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ-EEGIQERLAEMLP 560 (567)
T ss_dssp CTTCCEEECCSSCCCCCG-GGTT--CSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGG-SSSCTTHHHHHCT
T ss_pred CCCCCEEECCCCCCCCCc-ccCC--CCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCC-CccHHHHHHHHCc
Confidence 344555555555555566 4433 788888888888887764 5 78888888999988885332 2221111 1367
Q ss_pred ccceee
Q 048004 435 CLETLR 440 (943)
Q Consensus 435 ~L~~L~ 440 (943)
+|+.|+
T Consensus 561 ~L~~L~ 566 (567)
T 1dce_A 561 SVSSIL 566 (567)
T ss_dssp TCSEEE
T ss_pred ccCccC
Confidence 777764
No 119
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.23 E-value=1.8e-11 Score=116.54 Aligned_cols=126 Identities=21% Similarity=0.156 Sum_probs=96.5
Q ss_pred CCcceeeeecccCCCCCCCC-CCccccccCCCcccEEEecCccccccCccccCCCcccEEecCCCCCcc-cchhHhhccc
Q 048004 147 QHLRTFLPVMLTNSRPGFLA-PSILPKLLKPQRLRAFSLRGYYIFELPDSVGDLRYLRYLNLCGTKIRT-LPESVNKLYN 224 (943)
Q Consensus 147 ~~Lr~L~~~~~~~~~~~~~~-~~~~~~~~~l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~L~~n~i~~-lp~~i~~L~~ 224 (943)
++|+.|.+.... +. ..++..+..+++|++|++++|.++.+ ..+..+++|++|+|++|.++. +|..++++++
T Consensus 24 ~~L~~L~l~~n~------l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 96 (168)
T 2ell_A 24 AAVRELVLDNCK------SNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPN 96 (168)
T ss_dssp TSCSEEECCSCB------CBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTT
T ss_pred ccCCEEECCCCC------CChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCC
Confidence 566777654432 12 23433334888999999999998888 778889999999999999987 7777788999
Q ss_pred CcEEecCCCcchhhch--HhhcccccccccccCCCCccccCCc----ccCCccccccccceee
Q 048004 225 LHSLLLEDCDRLKKLC--ADMGNLAKLHHLKNSNTKSLEEMPV----GIGKLTSLQTLCNFVV 281 (943)
Q Consensus 225 L~~L~L~~~~~l~~lp--~~~~~L~~L~~L~l~~~~~~~~~p~----~i~~L~~L~~L~~~~~ 281 (943)
|++|++++| .+..+| ..++.+++|++|++++|. +..+|. .+..+++|++|+...+
T Consensus 97 L~~L~Ls~N-~l~~~~~~~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~~n 157 (168)
T 2ell_A 97 LTHLNLSGN-KLKDISTLEPLKKLECLKSLDLFNCE-VTNLNDYRESVFKLLPQLTYLDGYDR 157 (168)
T ss_dssp CCEEECBSS-SCCSSGGGGGGSSCSCCCEEECCSSG-GGTSTTHHHHHHTTCSSCCEETTEET
T ss_pred CCEEeccCC-ccCcchhHHHHhcCCCCCEEEeeCCc-CcchHHHHHHHHHhCccCcEecCCCC
Confidence 999999985 566655 678899999999999988 777776 5888888888854433
No 120
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.22 E-value=2.3e-11 Score=124.91 Aligned_cols=96 Identities=24% Similarity=0.291 Sum_probs=58.1
Q ss_pred cCCCcccEEEecCccccccCccccCCCcccEEecCCCCCcccchhHhhcccCcEEecCCCcchhhchHhhcccccccccc
Q 048004 174 LKPQRLRAFSLRGYYIFELPDSVGDLRYLRYLNLCGTKIRTLPESVNKLYNLHSLLLEDCDRLKKLCADMGNLAKLHHLK 253 (943)
Q Consensus 174 ~~l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~L~~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~~~~L~~L~~L~ 253 (943)
..+++|++|++++|.++.+|. +..+++|++|+|++|.++.+|.... ++|++|++++| .+..+| .++++++|++|+
T Consensus 60 ~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~N~l~~l~~~~~--~~L~~L~L~~N-~l~~~~-~l~~l~~L~~L~ 134 (263)
T 1xeu_A 60 QFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNRNRLKNLNGIPS--ACLSRLFLDNN-ELRDTD-SLIHLKNLEILS 134 (263)
T ss_dssp GGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCSSCCSCCTTCCC--SSCCEEECCSS-CCSBSG-GGTTCTTCCEEE
T ss_pred hhCCCCCEEECCCCccCCChh-hccCCCCCEEECCCCccCCcCcccc--CcccEEEccCC-ccCCCh-hhcCcccccEEE
Confidence 356666666666666666655 6666666666666666666654322 66666666664 444444 466666666666
Q ss_pred cCCCCccccCCcccCCccccccc
Q 048004 254 NSNTKSLEEMPVGIGKLTSLQTL 276 (943)
Q Consensus 254 l~~~~~~~~~p~~i~~L~~L~~L 276 (943)
+++|. ++.+| .++.+++|++|
T Consensus 135 Ls~N~-i~~~~-~l~~l~~L~~L 155 (263)
T 1xeu_A 135 IRNNK-LKSIV-MLGFLSKLEVL 155 (263)
T ss_dssp CTTSC-CCBCG-GGGGCTTCCEE
T ss_pred CCCCc-CCCCh-HHccCCCCCEE
Confidence 66666 55554 45555555555
No 121
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.22 E-value=9.4e-12 Score=118.43 Aligned_cols=101 Identities=23% Similarity=0.305 Sum_probs=89.2
Q ss_pred CCCcccEEEecCcccc--ccCccccCCCcccEEecCCCCCcccchhHhhcccCcEEecCCCcchhhchHhhccccccccc
Q 048004 175 KPQRLRAFSLRGYYIF--ELPDSVGDLRYLRYLNLCGTKIRTLPESVNKLYNLHSLLLEDCDRLKKLCADMGNLAKLHHL 252 (943)
Q Consensus 175 ~l~~L~~L~L~~~~i~--~lp~~~~~L~~L~~L~L~~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~~~~L~~L~~L 252 (943)
..++|++|++++|.+. .+|..+..+++|++|++++|.++.+ ..++.+++|++|++++|.....+|..++++++|++|
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 100 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL 100 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence 4478999999999998 8999899999999999999999988 788999999999999976555488888889999999
Q ss_pred ccCCCCccccCC--cccCCcccccccc
Q 048004 253 KNSNTKSLEEMP--VGIGKLTSLQTLC 277 (943)
Q Consensus 253 ~l~~~~~~~~~p--~~i~~L~~L~~L~ 277 (943)
++++|. ++.+| ..++.+++|++|+
T Consensus 101 ~Ls~N~-l~~~~~~~~l~~l~~L~~L~ 126 (168)
T 2ell_A 101 NLSGNK-LKDISTLEPLKKLECLKSLD 126 (168)
T ss_dssp ECBSSS-CCSSGGGGGGSSCSCCCEEE
T ss_pred eccCCc-cCcchhHHHHhcCCCCCEEE
Confidence 999998 78876 5688888888883
No 122
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.21 E-value=1.5e-11 Score=117.98 Aligned_cols=129 Identities=20% Similarity=0.156 Sum_probs=104.3
Q ss_pred ccccCCCCcceeeeecccCCCCCCCCCCccccccCC-CcccEEEecCccccccCccccCCCcccEEecCCCCCcccchhH
Q 048004 141 GDLYDIQHLRTFLPVMLTNSRPGFLAPSILPKLLKP-QRLRAFSLRGYYIFELPDSVGDLRYLRYLNLCGTKIRTLPESV 219 (943)
Q Consensus 141 ~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~l-~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~L~~n~i~~lp~~i 219 (943)
..+.++.+|+.|.+.++.- ..+ +.+..+ ++|++|++++|.++.+ ..|+.+++|++|+|++|.|+.+|..+
T Consensus 13 ~~~~~~~~L~~L~l~~n~l-------~~i-~~~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~ 83 (176)
T 1a9n_A 13 AQYTNAVRDRELDLRGYKI-------PVI-ENLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGL 83 (176)
T ss_dssp CEEECTTSCEEEECTTSCC-------CSC-CCGGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCH
T ss_pred HhcCCcCCceEEEeeCCCC-------chh-HHhhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcch
Confidence 4456678888887655421 122 445544 4999999999999888 67999999999999999999998665
Q ss_pred -hhcccCcEEecCCCcchhhchH--hhcccccccccccCCCCccccCCcc----cCCcccccccccee
Q 048004 220 -NKLYNLHSLLLEDCDRLKKLCA--DMGNLAKLHHLKNSNTKSLEEMPVG----IGKLTSLQTLCNFV 280 (943)
Q Consensus 220 -~~L~~L~~L~L~~~~~l~~lp~--~~~~L~~L~~L~l~~~~~~~~~p~~----i~~L~~L~~L~~~~ 280 (943)
+.+++|++|++++| .+..+|. .++.+++|++|++++|. +..+|.. ++.+++|+.|+...
T Consensus 84 ~~~l~~L~~L~L~~N-~i~~~~~~~~l~~l~~L~~L~l~~N~-i~~~~~~~~~~~~~l~~L~~Ld~~~ 149 (176)
T 1a9n_A 84 DQALPDLTELILTNN-SLVELGDLDPLASLKSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVLDFQK 149 (176)
T ss_dssp HHHCTTCCEEECCSC-CCCCGGGGGGGGGCTTCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEETTEE
T ss_pred hhcCCCCCEEECCCC-cCCcchhhHhhhcCCCCCEEEecCCC-CCCcHhHHHHHHHHCCccceeCCCc
Confidence 99999999999995 5677886 78999999999999998 7788875 88889999885443
No 123
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.21 E-value=6.8e-11 Score=126.28 Aligned_cols=39 Identities=5% Similarity=-0.191 Sum_probs=30.3
Q ss_pred cCCCCCcccEEEEcCCcCeeeeccccCCCCCccEEEEec
Q 048004 501 SVSSLPALCKLHIGGCKKVVWRRPLKLRLPKLEELEIEN 539 (943)
Q Consensus 501 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 539 (943)
.|..+++|+.+++.+|.+..+...+|....++..+....
T Consensus 119 aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~ 157 (329)
T 3sb4_A 119 AFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGS 157 (329)
T ss_dssp TTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTC
T ss_pred HhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcc
Confidence 577788889999988888888888887777766665543
No 124
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.19 E-value=1.3e-11 Score=114.82 Aligned_cols=102 Identities=21% Similarity=0.268 Sum_probs=90.2
Q ss_pred CCCcccEEEecCcccc--ccCccccCCCcccEEecCCCCCcccchhHhhcccCcEEecCCCcchhhchHhhccccccccc
Q 048004 175 KPQRLRAFSLRGYYIF--ELPDSVGDLRYLRYLNLCGTKIRTLPESVNKLYNLHSLLLEDCDRLKKLCADMGNLAKLHHL 252 (943)
Q Consensus 175 ~l~~L~~L~L~~~~i~--~lp~~~~~L~~L~~L~L~~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~~~~L~~L~~L 252 (943)
..++|+.|++++|.+. .+|..+..+++|++|++++|.++.+ ..++.+++|++|++++|.....+|..++++++|++|
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence 3478999999999998 8999999999999999999999988 778999999999999975544588888899999999
Q ss_pred ccCCCCccccCC--cccCCccccccccc
Q 048004 253 KNSNTKSLEEMP--VGIGKLTSLQTLCN 278 (943)
Q Consensus 253 ~l~~~~~~~~~p--~~i~~L~~L~~L~~ 278 (943)
++++|. +..+| ..++.+++|++|+.
T Consensus 94 ~ls~N~-i~~~~~~~~~~~l~~L~~L~l 120 (149)
T 2je0_A 94 NLSGNK-IKDLSTIEPLKKLENLKSLDL 120 (149)
T ss_dssp ECTTSC-CCSHHHHGGGGGCTTCCEEEC
T ss_pred ECCCCc-CCChHHHHHHhhCCCCCEEeC
Confidence 999999 77765 67999999999843
No 125
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.18 E-value=2.6e-11 Score=117.80 Aligned_cols=102 Identities=20% Similarity=0.278 Sum_probs=86.7
Q ss_pred CcccEEEecCccccccCccccCCCcccEEecCCCCCcccc-hhHhhcccCcEEecCCCcchhhchHhhcccccccccccC
Q 048004 177 QRLRAFSLRGYYIFELPDSVGDLRYLRYLNLCGTKIRTLP-ESVNKLYNLHSLLLEDCDRLKKLCADMGNLAKLHHLKNS 255 (943)
Q Consensus 177 ~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~L~~n~i~~lp-~~i~~L~~L~~L~L~~~~~l~~lp~~~~~L~~L~~L~l~ 255 (943)
++|++|++++|.++.+|..|..+++|++|+|++|.|+.++ ..|.++++|++|+|++|......|..|+++++|++|+++
T Consensus 31 ~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~ 110 (193)
T 2wfh_A 31 RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLH 110 (193)
T ss_dssp TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECC
T ss_pred CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECC
Confidence 5789999999999999989999999999999999999887 568999999999999965434345569999999999999
Q ss_pred CCCccccCCcc-cCCccccccccce
Q 048004 256 NTKSLEEMPVG-IGKLTSLQTLCNF 279 (943)
Q Consensus 256 ~~~~~~~~p~~-i~~L~~L~~L~~~ 279 (943)
+|. +..+|.+ +..+++|+.|+..
T Consensus 111 ~N~-l~~~~~~~~~~l~~L~~L~L~ 134 (193)
T 2wfh_A 111 GND-ISVVPEGAFNDLSALSHLAIG 134 (193)
T ss_dssp SSC-CCBCCTTTTTTCTTCCEEECC
T ss_pred CCC-CCeeChhhhhcCccccEEEeC
Confidence 998 7888876 8888999888543
No 126
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.16 E-value=4.2e-11 Score=127.92 Aligned_cols=280 Identities=13% Similarity=0.045 Sum_probs=155.2
Q ss_pred ccCCccEEeecCCCCcccchhhhhhHHhhhhhcccccccEEEeecCCCCCCCCccccCccccceEEeccCCCccccCC--
Q 048004 556 DICSLKRLTIDSCPKLQSLVAEEEKDQQQQLCELSCRLEYLTLSGCQGLVKLPQSSLSLNSLREIEIYKCSSLVSFPE-- 633 (943)
Q Consensus 556 ~l~~L~~L~l~~~~~L~~l~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~~~-- 633 (943)
.+.+++.|.+++. +. . .....+....++|+.|++++|.... .......++.++.+.+..+ .+|.
T Consensus 23 ~~~~l~~L~l~g~--i~---~----~~~~~l~~~l~~L~~LdLs~n~i~~-~~~~~~~~~~~~~~~~~~~----~I~~~a 88 (329)
T 3sb4_A 23 EANSITHLTLTGK--LN---A----EDFRHLRDEFPSLKVLDISNAEIKM-YSGKAGTYPNGKFYIYMAN----FVPAYA 88 (329)
T ss_dssp HHHHCSEEEEEEE--EC---H----HHHHHHHHSCTTCCEEEEEEEEECC-EEESSSSSGGGCCEEECTT----EECTTT
T ss_pred hhCceeEEEEecc--cc---H----HHHHHHHHhhccCeEEecCcceeEE-ecCcccccccccccccccc----ccCHHH
Confidence 4567888888763 11 1 1112222224789999999987651 0111112233444444443 3442
Q ss_pred ccC--------CCCccEEEeccCCCCcccccccccCCCCCCCeEEEeecCCCccccCccCCCCccEEEeccCCCcccccc
Q 048004 634 VAL--------PSKLKKIEIRECDALKSLPEAWMCGTNSSLEILSIQGCHSLTYIAGVQLPPSLKRLEIDFCDNLRTLTV 705 (943)
Q Consensus 634 ~~~--------~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~c~~L~~l~~ 705 (943)
+.. +++|+++++.+ .++.++...| ..+++|+.+++.+|.. ..++...+ .+|.++..++.
T Consensus 89 F~~~~~~~~~g~~~L~~l~L~~--~i~~I~~~aF-~~~~~L~~l~l~~n~i-~~i~~~aF---------~~~~~l~~l~~ 155 (329)
T 3sb4_A 89 FSNVVNGVTKGKQTLEKVILSE--KIKNIEDAAF-KGCDNLKICQIRKKTA-PNLLPEAL---------ADSVTAIFIPL 155 (329)
T ss_dssp TEEEETTEEEECTTCCC-CBCT--TCCEECTTTT-TTCTTCCEEEBCCSSC-CEECTTSS---------CTTTCEEEECT
T ss_pred hcccccccccccCCCcEEECCc--cccchhHHHh-hcCcccceEEcCCCCc-cccchhhh---------cCCCceEEecC
Confidence 344 78888888887 6677776665 7788888888888763 34443332 23333433332
Q ss_pred ccccccCCCCCCCeeeeeccCCcc---------cccc----cCCCCCCcCeEeecCCCCceecCCCCCCCCCcceEeecc
Q 048004 706 EEGIQSSSSSSSSSRSIWTCENLK---------FLPS----GLHNLRQLQEIEIWECENLVSFPQGGLPCAKLSMLTVYG 772 (943)
Q Consensus 706 ~~~~~~~~~~~L~~l~l~~~~~l~---------~lp~----~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 772 (943)
...........+....+.+|..++ .++. .-....+++.+.+.++-....+......+++|++|++++
T Consensus 156 ~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~ 235 (329)
T 3sb4_A 156 GSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISK 235 (329)
T ss_dssp TCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTT
T ss_pred cchhhhhccccccccccccccccceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCC
Confidence 221111111222222233343333 1111 111245556666655421111110011256888888888
Q ss_pred cCCCCccccccCCCCccceEEecCCCchhhhhhhhccccCCCCCcC-EEEEeecCCCceecCCCccccCCCCCCCCccce
Q 048004 773 CERLKALPKGLHNLTNLHSLEIHGNTKIWKSMIEWGRGFHRFSSLR-ELKISRCDDDMVSFPPEDIRLGTTLPLPASLTS 851 (943)
Q Consensus 773 ~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~-~L~ls~n~~~~~~~~~~~~~~~~~~~~l~~L~~ 851 (943)
|.+...-+..|.++++|+.+++.+| +. .++. ..|..+++|+ .+++.+ .+..+++..| ..+++|++
T Consensus 236 n~i~~I~~~aF~~~~~L~~l~l~~n--i~-~I~~--~aF~~~~~L~~~l~l~~---~l~~I~~~aF------~~c~~L~~ 301 (329)
T 3sb4_A 236 TNATTIPDFTFAQKKYLLKIKLPHN--LK-TIGQ--RVFSNCGRLAGTLELPA---SVTAIEFGAF------MGCDNLRY 301 (329)
T ss_dssp BCCCEECTTTTTTCTTCCEEECCTT--CC-EECT--TTTTTCTTCCEEEEECT---TCCEECTTTT------TTCTTEEE
T ss_pred CCcceecHhhhhCCCCCCEEECCcc--cc-eehH--HHhhCChhccEEEEEcc---cceEEchhhh------hCCccCCE
Confidence 7665444556788888888888776 22 2222 2378888888 888876 4677777666 67888888
Q ss_pred eeccCCCCCccccc-ccccCCCCCeEE
Q 048004 852 LEIGYFPNLERLSS-SIVDLQNLTSLF 877 (943)
Q Consensus 852 L~l~~~~~l~~l~~-~~~~l~~L~~L~ 877 (943)
+++++ +.++.++. .|.++++|++++
T Consensus 302 l~l~~-n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 302 VLATG-DKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp EEECS-SCCCEECTTTTCTTCCCCEEE
T ss_pred EEeCC-CccCccchhhhcCCcchhhhc
Confidence 88876 46777765 467778888775
No 127
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.15 E-value=6.3e-11 Score=115.07 Aligned_cols=95 Identities=20% Similarity=0.223 Sum_probs=82.9
Q ss_pred cEEEecCccccccCccccCCCcccEEecCCCCCcccchhHhhcccCcEEecCCCcchhhchHhhcccccccccccCCCCc
Q 048004 180 RAFSLRGYYIFELPDSVGDLRYLRYLNLCGTKIRTLPESVNKLYNLHSLLLEDCDRLKKLCADMGNLAKLHHLKNSNTKS 259 (943)
Q Consensus 180 ~~L~L~~~~i~~lp~~~~~L~~L~~L~L~~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~~~~L~~L~~L~l~~~~~ 259 (943)
++++++++.++.+|..+. .+|++|+|++|.|+.+|..+.++++|++|++++|......|..|.++++|++|++++|.
T Consensus 13 ~~l~~~~~~l~~ip~~~~--~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~- 89 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGIP--RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR- 89 (193)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-
T ss_pred CEEEcCCCCCCcCCCCCC--CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc-
Confidence 688999999999998765 68999999999999999999999999999999965444445669999999999999999
Q ss_pred cccCCcc-cCCcccccccc
Q 048004 260 LEEMPVG-IGKLTSLQTLC 277 (943)
Q Consensus 260 ~~~~p~~-i~~L~~L~~L~ 277 (943)
+..+|.. ++.+++|++|+
T Consensus 90 l~~i~~~~f~~l~~L~~L~ 108 (193)
T 2wfh_A 90 LRCIPPRTFDGLKSLRLLS 108 (193)
T ss_dssp CCBCCTTTTTTCTTCCEEE
T ss_pred cCEeCHHHhCCCCCCCEEE
Confidence 7777764 99999999983
No 128
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.13 E-value=5.3e-11 Score=115.71 Aligned_cols=99 Identities=18% Similarity=0.184 Sum_probs=55.8
Q ss_pred cccEEEecCccccccCcc--ccCCCcccEEecCCCCCccc-chhHhhcccCcEEecCCCcchhhchHhhccccccccccc
Q 048004 178 RLRAFSLRGYYIFELPDS--VGDLRYLRYLNLCGTKIRTL-PESVNKLYNLHSLLLEDCDRLKKLCADMGNLAKLHHLKN 254 (943)
Q Consensus 178 ~L~~L~L~~~~i~~lp~~--~~~L~~L~~L~L~~n~i~~l-p~~i~~L~~L~~L~L~~~~~l~~lp~~~~~L~~L~~L~l 254 (943)
+|++|++++|.++.++.. |+.+++|++|+|++|.|+.+ |..++++++|++|+|++|......|..|+++++|++|++
T Consensus 30 ~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 109 (192)
T 1w8a_A 30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNL 109 (192)
T ss_dssp TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEEC
T ss_pred CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEEC
Confidence 566666666666665532 56666666666666666655 455666666666666664322222333566666666666
Q ss_pred CCCCccccCCcccCCccccccc
Q 048004 255 SNTKSLEEMPVGIGKLTSLQTL 276 (943)
Q Consensus 255 ~~~~~~~~~p~~i~~L~~L~~L 276 (943)
++|......|..++.+++|++|
T Consensus 110 ~~N~l~~~~~~~~~~l~~L~~L 131 (192)
T 1w8a_A 110 YDNQISCVMPGSFEHLNSLTSL 131 (192)
T ss_dssp CSSCCCEECTTSSTTCTTCCEE
T ss_pred CCCcCCeeCHHHhhcCCCCCEE
Confidence 6666222234445555555555
No 129
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.12 E-value=1.3e-11 Score=145.80 Aligned_cols=88 Identities=25% Similarity=0.298 Sum_probs=50.0
Q ss_pred ccccccCccccCCCcccEEecCCCCCcccchhHhhcccCcEEecCCCcchhhchHhhcccccccccccCCCCccccCCcc
Q 048004 187 YYIFELPDSVGDLRYLRYLNLCGTKIRTLPESVNKLYNLHSLLLEDCDRLKKLCADMGNLAKLHHLKNSNTKSLEEMPVG 266 (943)
Q Consensus 187 ~~i~~lp~~~~~L~~L~~L~L~~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~~~~L~~L~~L~l~~~~~~~~~p~~ 266 (943)
|.+...|..+..+..|++|+|++|.+..+|..+.++++|++|+|++| .+..+|..|++|++|++|+|++|. +..+|..
T Consensus 211 n~~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~Ls~N~-l~~lp~~ 288 (727)
T 4b8c_D 211 NRMVMPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGN-SLTELPAEIKNLSNLRVLDLSHNR-LTSLPAE 288 (727)
T ss_dssp -----------CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTS-CCSCCCGGGGGGTTCCEEECTTSC-CSSCCSS
T ss_pred cceecChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCC-cCcccChhhhCCCCCCEEeCcCCc-CCccChh
Confidence 33444455666677777777777777777766667777777777764 444667667777777777777776 5556655
Q ss_pred cCCccccccc
Q 048004 267 IGKLTSLQTL 276 (943)
Q Consensus 267 i~~L~~L~~L 276 (943)
|+.|++|++|
T Consensus 289 ~~~l~~L~~L 298 (727)
T 4b8c_D 289 LGSCFQLKYF 298 (727)
T ss_dssp GGGGTTCSEE
T ss_pred hcCCCCCCEE
Confidence 5444443333
No 130
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.12 E-value=3.3e-11 Score=142.33 Aligned_cols=108 Identities=26% Similarity=0.353 Sum_probs=96.3
Q ss_pred cccccc-CCCcccEEEecCccccccCccccCCCcccEEecCCCCCcccchhHhhcccCcEEecCCCcchhhchHhhcccc
Q 048004 169 ILPKLL-KPQRLRAFSLRGYYIFELPDSVGDLRYLRYLNLCGTKIRTLPESVNKLYNLHSLLLEDCDRLKKLCADMGNLA 247 (943)
Q Consensus 169 ~~~~~~-~l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~L~~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~~~~L~ 247 (943)
++++.+ .++.|++|+|++|.+..+|..+..+++|++|+|++|.|+.+|.+|++|++|++|+|++| .+..+|..|++|+
T Consensus 215 ~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~ 293 (727)
T 4b8c_D 215 MPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHN-RLTSLPAELGSCF 293 (727)
T ss_dssp -------CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTS-CCSSCCSSGGGGT
T ss_pred cChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCC-cCCccChhhcCCC
Confidence 455556 99999999999999999999888999999999999999999999999999999999996 4668999999999
Q ss_pred cccccccCCCCccccCCcccCCccccccccc
Q 048004 248 KLHHLKNSNTKSLEEMPVGIGKLTSLQTLCN 278 (943)
Q Consensus 248 ~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~ 278 (943)
+|++|+|++|. ++.+|.+|+.|++|++|+.
T Consensus 294 ~L~~L~L~~N~-l~~lp~~~~~l~~L~~L~L 323 (727)
T 4b8c_D 294 QLKYFYFFDNM-VTTLPWEFGNLCNLQFLGV 323 (727)
T ss_dssp TCSEEECCSSC-CCCCCSSTTSCTTCCCEEC
T ss_pred CCCEEECCCCC-CCccChhhhcCCCccEEeC
Confidence 99999999998 8899999999999999944
No 131
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.12 E-value=7.9e-11 Score=114.48 Aligned_cols=104 Identities=18% Similarity=0.183 Sum_probs=84.4
Q ss_pred CcceeeeecccCCCCCCCCCCccc-ccc-CCCcccEEEecCcccccc-CccccCCCcccEEecCCCCCcccch-hHhhcc
Q 048004 148 HLRTFLPVMLTNSRPGFLAPSILP-KLL-KPQRLRAFSLRGYYIFEL-PDSVGDLRYLRYLNLCGTKIRTLPE-SVNKLY 223 (943)
Q Consensus 148 ~Lr~L~~~~~~~~~~~~~~~~~~~-~~~-~l~~L~~L~L~~~~i~~l-p~~~~~L~~L~~L~L~~n~i~~lp~-~i~~L~ 223 (943)
+++.|.+.... ...+++ .++ .+++|++|+|++|.++.+ |..|..+++|++|+|++|.|+.+|. .++.++
T Consensus 30 ~l~~L~l~~n~-------i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 102 (192)
T 1w8a_A 30 HTTELLLNDNE-------LGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLH 102 (192)
T ss_dssp TCSEEECCSCC-------CCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCT
T ss_pred CCCEEECCCCc-------CCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCC
Confidence 77888665542 123443 345 899999999999999887 6789999999999999999998774 488999
Q ss_pred cCcEEecCCCcchhhchHhhcccccccccccCCCC
Q 048004 224 NLHSLLLEDCDRLKKLCADMGNLAKLHHLKNSNTK 258 (943)
Q Consensus 224 ~L~~L~L~~~~~l~~lp~~~~~L~~L~~L~l~~~~ 258 (943)
+|++|++++|......|..++.+++|++|++++|.
T Consensus 103 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 137 (192)
T 1w8a_A 103 QLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNP 137 (192)
T ss_dssp TCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCC
T ss_pred CCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCC
Confidence 99999999976555568889999999999999998
No 132
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.04 E-value=1e-10 Score=112.00 Aligned_cols=102 Identities=26% Similarity=0.389 Sum_probs=87.3
Q ss_pred ccCCCcccEEEecCccccccCccccCCC-cccEEecCCCCCcccchhHhhcccCcEEecCCCcchhhchHh-hccccccc
Q 048004 173 LLKPQRLRAFSLRGYYIFELPDSVGDLR-YLRYLNLCGTKIRTLPESVNKLYNLHSLLLEDCDRLKKLCAD-MGNLAKLH 250 (943)
Q Consensus 173 ~~~l~~L~~L~L~~~~i~~lp~~~~~L~-~L~~L~L~~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~-~~~L~~L~ 250 (943)
+..+.+|+.|++++|.++.+|. +..+. +|++|+|++|.++.+ ..++.+++|++|++++| .+..+|.. ++.+++|+
T Consensus 15 ~~~~~~L~~L~l~~n~l~~i~~-~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~ 91 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNN-RICRIGEGLDQALPDLT 91 (176)
T ss_dssp EECTTSCEEEECTTSCCCSCCC-GGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSS-CCCEECSCHHHHCTTCC
T ss_pred cCCcCCceEEEeeCCCCchhHH-hhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCC-cccccCcchhhcCCCCC
Confidence 3478899999999999999865 55555 999999999999988 67899999999999995 56677755 49999999
Q ss_pred ccccCCCCccccCCc--ccCCccccccccc
Q 048004 251 HLKNSNTKSLEEMPV--GIGKLTSLQTLCN 278 (943)
Q Consensus 251 ~L~l~~~~~~~~~p~--~i~~L~~L~~L~~ 278 (943)
+|++++|. ++.+|. .++.+++|++|+.
T Consensus 92 ~L~L~~N~-i~~~~~~~~l~~l~~L~~L~l 120 (176)
T 1a9n_A 92 ELILTNNS-LVELGDLDPLASLKSLTYLCI 120 (176)
T ss_dssp EEECCSCC-CCCGGGGGGGGGCTTCCEEEC
T ss_pred EEECCCCc-CCcchhhHhhhcCCCCCEEEe
Confidence 99999998 788887 6888888888843
No 133
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=99.04 E-value=5.7e-11 Score=137.66 Aligned_cols=84 Identities=14% Similarity=0.205 Sum_probs=74.9
Q ss_pred CCcchhhhhcccCCCcch-hhhhhhhccCCCCceeChhhHHHHHHHcCCccCCCCCCcHHHHHHHHHHHHHhCCcccccc
Q 048004 3 CRIIPALAVSYYYLPPTL-KQCFAHCSLLPKDYEFEEEEIILLWCAAGFLDHKEDENPSEDLGRDFFKELCSRSFFQQSA 81 (943)
Q Consensus 3 ~~i~~~L~lSY~~L~~~l-k~cfl~cslfpe~~~i~~~~Li~~wiaeG~i~~~~~~~~~~~~~~~~~~~L~~~~ll~~~~ 81 (943)
++|.++|++||+.||+++ |+||+|||+||+++.|+++.++.+|+++| ++.+..++++|+++||++..
T Consensus 353 ~~I~aaLelSYd~Lp~eelK~cFL~LAIFPed~~I~~elLa~LW~aeG-----------eedAe~~L~eLvdRSLLq~d- 420 (1221)
T 1vt4_I 353 DKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVI-----------KSDVMVVVNKLHKYSLVEKQ- 420 (1221)
T ss_dssp HHHHHHHHHHHHHSCTTHHHHHHHHTTSSCTTSCEEHHHHHHHHCSSC-----------SHHHHHHHHHHHTSSSSSBC-
T ss_pred hHHHHHHHHHHHhCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHhcCCC-----------HHHHHHHHHHHHhhCCEEEe-
Confidence 458899999999999999 99999999999999999999999999998 13478899999999999984
Q ss_pred CCCCceehhhHHHHHHH
Q 048004 82 TDASLFVMHDLINDLAR 98 (943)
Q Consensus 82 ~~~~~~~mHdlv~dla~ 98 (943)
+....|+|||++++++.
T Consensus 421 ~~~~rYrMHDLllELr~ 437 (1221)
T 1vt4_I 421 PKESTISIPSIYLELKV 437 (1221)
T ss_dssp SSSSEEBCCCHHHHHHH
T ss_pred CCCCEEEehHHHHHHhc
Confidence 34678999999999764
No 134
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.03 E-value=2.2e-10 Score=130.79 Aligned_cols=96 Identities=23% Similarity=0.280 Sum_probs=81.9
Q ss_pred cccEEEecCccccccCccccCCCcccEEecCCCCCcccchhHhhcccCcEEecCCCcchhhchHhhcccccccccccCCC
Q 048004 178 RLRAFSLRGYYIFELPDSVGDLRYLRYLNLCGTKIRTLPESVNKLYNLHSLLLEDCDRLKKLCADMGNLAKLHHLKNSNT 257 (943)
Q Consensus 178 ~L~~L~L~~~~i~~lp~~~~~L~~L~~L~L~~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~~~~L~~L~~L~l~~~ 257 (943)
.|++|++++|.++.+|. |+.+++|++|+|++|.|+.+|..++.+++|++|+|++| .+..+| .++++++|++|++++|
T Consensus 442 ~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N-~l~~lp-~l~~l~~L~~L~Ls~N 518 (567)
T 1dce_A 442 DVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDN-ALENVD-GVANLPRLQELLLCNN 518 (567)
T ss_dssp TCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSS-CCCCCG-GGTTCSSCCEEECCSS
T ss_pred CceEEEecCCCCCCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCC-CCCCCc-ccCCCCCCcEEECCCC
Confidence 47788999999888887 88899999999999999999988999999999999984 566688 8889999999999998
Q ss_pred CccccC--CcccCCcccccccc
Q 048004 258 KSLEEM--PVGIGKLTSLQTLC 277 (943)
Q Consensus 258 ~~~~~~--p~~i~~L~~L~~L~ 277 (943)
. +..+ |..++.+++|+.|+
T Consensus 519 ~-l~~~~~p~~l~~l~~L~~L~ 539 (567)
T 1dce_A 519 R-LQQSAAIQPLVSCPRLVLLN 539 (567)
T ss_dssp C-CCSSSTTGGGGGCTTCCEEE
T ss_pred C-CCCCCCcHHHhcCCCCCEEE
Confidence 8 6666 77888888888883
No 135
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.99 E-value=2.1e-08 Score=109.16 Aligned_cols=82 Identities=11% Similarity=0.092 Sum_probs=47.3
Q ss_pred cCCCCCcCEEEEeecCCCceecCCCccccCCCCCCCCccceeeccCCCCCccccc-ccccCCCCCeEEEcCCCCCCCCCC
Q 048004 811 FHRFSSLRELKISRCDDDMVSFPPEDIRLGTTLPLPASLTSLEIGYFPNLERLSS-SIVDLQNLTSLFLYHCPKLKYFPE 889 (943)
Q Consensus 811 ~~~l~~L~~L~ls~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~-~~~~l~~L~~L~l~~c~~l~~l~~ 889 (943)
|..+++|+.+++.. .+..++...| ..+++|+.+.+.. +++.+.. .|.++ +|+.+++.++ .+..++.
T Consensus 296 F~~c~~L~~l~l~~---~i~~I~~~aF------~~c~~L~~l~lp~--~l~~I~~~aF~~~-~L~~l~l~~n-~~~~l~~ 362 (401)
T 4fdw_A 296 LEGCPKLARFEIPE---SIRILGQGLL------GGNRKVTQLTIPA--NVTQINFSAFNNT-GIKEVKVEGT-TPPQVFE 362 (401)
T ss_dssp TTTCTTCCEECCCT---TCCEECTTTT------TTCCSCCEEEECT--TCCEECTTSSSSS-CCCEEEECCS-SCCBCCC
T ss_pred hhCCccCCeEEeCC---ceEEEhhhhh------cCCCCccEEEECc--cccEEcHHhCCCC-CCCEEEEcCC-CCccccc
Confidence 55666666666653 3555555554 4556666666644 3555543 34556 7777777663 3444444
Q ss_pred CC---CCcccceeeecCCc
Q 048004 890 KG---LPSSLLELIIYRCP 905 (943)
Q Consensus 890 ~~---~~~~L~~L~i~~c~ 905 (943)
.. ++.+++.|.|-...
T Consensus 363 ~~F~~~~~~l~~l~vp~~~ 381 (401)
T 4fdw_A 363 KVWYGFPDDITVIRVPAES 381 (401)
T ss_dssp SSCCCSCTTCCEEEECGGG
T ss_pred ccccCCCCCccEEEeCHHH
Confidence 32 34577888887654
No 136
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.99 E-value=2.8e-08 Score=108.09 Aligned_cols=122 Identities=11% Similarity=0.130 Sum_probs=60.3
Q ss_pred CCcCeEeecCCCCceec-CCCCCCCCCcceEeecccCCC-----CccccccCCCCccceEEecCCCchhhhhhhhccccC
Q 048004 739 RQLQEIEIWECENLVSF-PQGGLPCAKLSMLTVYGCERL-----KALPKGLHNLTNLHSLEIHGNTKIWKSMIEWGRGFH 812 (943)
Q Consensus 739 ~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~-----~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~ 812 (943)
.+|+.+.+..+ +..+ +..|..+++|+.+++.++... ..-+..|.+|++|+.+++.++ +. .++. ..|.
T Consensus 248 ~~L~~i~lp~~--i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~~--i~-~I~~--~aF~ 320 (401)
T 4fdw_A 248 SGITTVKLPNG--VTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPES--IR-ILGQ--GLLG 320 (401)
T ss_dssp CCCSEEEEETT--CCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCTT--CC-EECT--TTTT
T ss_pred CCccEEEeCCC--ccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCCc--eE-EEhh--hhhc
Confidence 56666666322 3333 334555666666666655432 122345566666666666532 11 1111 1266
Q ss_pred CCCCcCEEEEeecCCCceecCCCccccCCCCCCCCccceeeccCCCCCcccc-cccccCC-CCCeEEE
Q 048004 813 RFSSLRELKISRCDDDMVSFPPEDIRLGTTLPLPASLTSLEIGYFPNLERLS-SSIVDLQ-NLTSLFL 878 (943)
Q Consensus 813 ~l~~L~~L~ls~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~-~~~~~l~-~L~~L~l 878 (943)
.+++|+.++|..+ +..++...| ..+ +|+.+++.++. +..++ ..+.+++ +++.|.+
T Consensus 321 ~c~~L~~l~lp~~---l~~I~~~aF------~~~-~L~~l~l~~n~-~~~l~~~~F~~~~~~l~~l~v 377 (401)
T 4fdw_A 321 GNRKVTQLTIPAN---VTQINFSAF------NNT-GIKEVKVEGTT-PPQVFEKVWYGFPDDITVIRV 377 (401)
T ss_dssp TCCSCCEEEECTT---CCEECTTSS------SSS-CCCEEEECCSS-CCBCCCSSCCCSCTTCCEEEE
T ss_pred CCCCccEEEECcc---ccEEcHHhC------CCC-CCCEEEEcCCC-CcccccccccCCCCCccEEEe
Confidence 6666666666442 555555554 344 66666666642 33332 2233442 4445544
No 137
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.98 E-value=3.6e-10 Score=107.58 Aligned_cols=92 Identities=26% Similarity=0.285 Sum_probs=70.1
Q ss_pred CcccEEEecCcccccc-CccccCCCcccEEecCCCCCcccchh-HhhcccCcEEecCCCcchhhchHh-hcccccccccc
Q 048004 177 QRLRAFSLRGYYIFEL-PDSVGDLRYLRYLNLCGTKIRTLPES-VNKLYNLHSLLLEDCDRLKKLCAD-MGNLAKLHHLK 253 (943)
Q Consensus 177 ~~L~~L~L~~~~i~~l-p~~~~~L~~L~~L~L~~n~i~~lp~~-i~~L~~L~~L~L~~~~~l~~lp~~-~~~L~~L~~L~ 253 (943)
++|++|+|++|.++.+ |..|.++++|++|+|++|+|+.+|.. +.++++|++|+|++| .+..+|.. |+++++|++|+
T Consensus 33 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~ 111 (174)
T 2r9u_A 33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN-HLKSIPRGAFDNLKSLTHIY 111 (174)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCSEEE
T ss_pred CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC-ccceeCHHHhccccCCCEEE
Confidence 6788888888888777 46678888888888888888888765 478888888888884 55666654 78888888888
Q ss_pred cCCCCccccCCcccCCc
Q 048004 254 NSNTKSLEEMPVGIGKL 270 (943)
Q Consensus 254 l~~~~~~~~~p~~i~~L 270 (943)
+++|. +...|..+..+
T Consensus 112 L~~N~-~~c~~~~~~~l 127 (174)
T 2r9u_A 112 LYNNP-WDCECRDIMYL 127 (174)
T ss_dssp CCSSC-BCTTBGGGHHH
T ss_pred eCCCC-cccccccHHHH
Confidence 88887 66555544433
No 138
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.97 E-value=2.3e-09 Score=102.66 Aligned_cols=108 Identities=17% Similarity=0.086 Sum_probs=56.5
Q ss_pred CCcCeEeecCCCCceecCCCCCCCCCcceEeecccCCCCccccccCCCCccceEEecCCCchhhhhhhhccccCCCCCcC
Q 048004 739 RQLQEIEIWECENLVSFPQGGLPCAKLSMLTVYGCERLKALPKGLHNLTNLHSLEIHGNTKIWKSMIEWGRGFHRFSSLR 818 (943)
Q Consensus 739 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~ 818 (943)
++|++|++++|...+..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|...... +..+..+++|+
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~----~~~~~~l~~L~ 103 (177)
T 2o6r_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLP----NGVFDKLTQLK 103 (177)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC----TTTTTTCTTCC
T ss_pred CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccC----HHHhhCCcccC
Confidence 56666666666544333333455666666666666554444444566666666666666533211 11145556666
Q ss_pred EEEEeecCCCceecCCCccccCCCCCCCCccceeeccCCC
Q 048004 819 ELKISRCDDDMVSFPPEDIRLGTTLPLPASLTSLEIGYFP 858 (943)
Q Consensus 819 ~L~ls~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 858 (943)
+|++++| .+..+|.+.+ ..+++|++|++++|+
T Consensus 104 ~L~l~~N--~l~~~~~~~~------~~l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 104 ELALDTN--QLKSVPDGIF------DRLTSLQKIWLHTNP 135 (177)
T ss_dssp EEECCSS--CCSCCCTTTT------TTCTTCCEEECCSSC
T ss_pred EEECcCC--cceEeCHHHh------cCCcccCEEEecCCC
Confidence 6666654 3344444332 334555555555543
No 139
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.97 E-value=6.7e-10 Score=105.67 Aligned_cols=99 Identities=20% Similarity=0.336 Sum_probs=86.7
Q ss_pred cEEEecCccccccCccccCCCcccEEecCCCCCccc-chhHhhcccCcEEecCCCcchhhchHh-hcccccccccccCCC
Q 048004 180 RAFSLRGYYIFELPDSVGDLRYLRYLNLCGTKIRTL-PESVNKLYNLHSLLLEDCDRLKKLCAD-MGNLAKLHHLKNSNT 257 (943)
Q Consensus 180 ~~L~L~~~~i~~lp~~~~~L~~L~~L~L~~n~i~~l-p~~i~~L~~L~~L~L~~~~~l~~lp~~-~~~L~~L~~L~l~~~ 257 (943)
++++++++.++.+|..+. .+|++|+|++|.|+.+ |..++++++|++|+|++| .+..+|.. |+++++|++|++++|
T Consensus 15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSN-KLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCC-CCCccChhHhCCcchhhEEECCCC
Confidence 689999999999998875 8999999999999988 467899999999999995 67777765 689999999999999
Q ss_pred CccccCCcc-cCCccccccccceeec
Q 048004 258 KSLEEMPVG-IGKLTSLQTLCNFVVG 282 (943)
Q Consensus 258 ~~~~~~p~~-i~~L~~L~~L~~~~~~ 282 (943)
. +..+|.+ ++.+++|++|+...+.
T Consensus 92 ~-l~~l~~~~~~~l~~L~~L~L~~N~ 116 (174)
T 2r9u_A 92 H-LKSIPRGAFDNLKSLTHIYLYNNP 116 (174)
T ss_dssp C-CCCCCTTTTTTCTTCSEEECCSSC
T ss_pred c-cceeCHHHhccccCCCEEEeCCCC
Confidence 8 8888887 9999999999654443
No 140
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.96 E-value=8.3e-12 Score=122.37 Aligned_cols=102 Identities=21% Similarity=0.243 Sum_probs=79.1
Q ss_pred cccCCCcccEEEecCccccccCccccCCCcccEEecCCCCCcccchhHhhcccCcEEecCCCcchhhchHhhcccccccc
Q 048004 172 KLLKPQRLRAFSLRGYYIFELPDSVGDLRYLRYLNLCGTKIRTLPESVNKLYNLHSLLLEDCDRLKKLCADMGNLAKLHH 251 (943)
Q Consensus 172 ~~~~l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~L~~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~~~~L~~L~~ 251 (943)
.+..+++|++|++++|.++.+| .+..+++|++|++++|.++.+|..+..+++|++|++++| .+..+| .++++++|++
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N-~l~~l~-~~~~l~~L~~ 119 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYN-QIASLS-GIEKLVNLRV 119 (198)
T ss_dssp HHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEE-ECCCHH-HHHHHHHSSE
T ss_pred HHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCC-cCCcCC-ccccCCCCCE
Confidence 3447788888888888888887 778888888888888888888887788888888888884 566666 6888888888
Q ss_pred cccCCCCccccCCc--ccCCcccccccc
Q 048004 252 LKNSNTKSLEEMPV--GIGKLTSLQTLC 277 (943)
Q Consensus 252 L~l~~~~~~~~~p~--~i~~L~~L~~L~ 277 (943)
|++++|. +..+|. .++.+++|++|+
T Consensus 120 L~l~~N~-i~~~~~~~~l~~l~~L~~L~ 146 (198)
T 1ds9_A 120 LYMSNNK-ITNWGEIDKLAALDKLEDLL 146 (198)
T ss_dssp EEESEEE-CCCHHHHHHHTTTTTCSEEE
T ss_pred EECCCCc-CCchhHHHHHhcCCCCCEEE
Confidence 8888887 666554 467777777773
No 141
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.96 E-value=6.7e-10 Score=105.33 Aligned_cols=81 Identities=28% Similarity=0.361 Sum_probs=39.3
Q ss_pred CcccEEEecCcccccc-CccccCCCcccEEecCCCCCcccchh-HhhcccCcEEecCCCcchhhchH-hhcccccccccc
Q 048004 177 QRLRAFSLRGYYIFEL-PDSVGDLRYLRYLNLCGTKIRTLPES-VNKLYNLHSLLLEDCDRLKKLCA-DMGNLAKLHHLK 253 (943)
Q Consensus 177 ~~L~~L~L~~~~i~~l-p~~~~~L~~L~~L~L~~n~i~~lp~~-i~~L~~L~~L~L~~~~~l~~lp~-~~~~L~~L~~L~ 253 (943)
+.|++|+|++|.++.+ |..|.++++|++|+|++|+|+.+|.. +.++++|++|+|++| .+..+|. .|.++++|++|+
T Consensus 30 ~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~ 108 (170)
T 3g39_A 30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN-QLKSIPRGAFDNLKSLTHIW 108 (170)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEE
T ss_pred CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC-ccCEeCHHHhcCCCCCCEEE
Confidence 4445555555555444 33445555555555555555555432 345555555555553 3333332 244555555555
Q ss_pred cCCCC
Q 048004 254 NSNTK 258 (943)
Q Consensus 254 l~~~~ 258 (943)
+++|.
T Consensus 109 L~~N~ 113 (170)
T 3g39_A 109 LLNNP 113 (170)
T ss_dssp CCSSC
T ss_pred eCCCC
Confidence 55554
No 142
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.92 E-value=5.5e-09 Score=100.06 Aligned_cols=127 Identities=19% Similarity=0.177 Sum_probs=94.0
Q ss_pred cCeEeecCCCCceecCCCCCCCCCcceEeecccCCCCccccccCCCCccceEEecCCCchhhhhhhhccccCCCCCcCEE
Q 048004 741 LQEIEIWECENLVSFPQGGLPCAKLSMLTVYGCERLKALPKGLHNLTNLHSLEIHGNTKIWKSMIEWGRGFHRFSSLREL 820 (943)
Q Consensus 741 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L 820 (943)
.+.++++++ .+..+|..+. ++|++|++++|.+.+..+..+..+++|++|++++|...... +..+..+++|++|
T Consensus 9 ~~~l~~~~~-~l~~~p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~----~~~~~~l~~L~~L 81 (177)
T 2o6r_A 9 GTEIRCNSK-GLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLP----DGVFDKLTKLTIL 81 (177)
T ss_dssp TTEEECCSS-CCSSCCTTCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCC----TTTTTTCTTCCEE
T ss_pred CCEEEecCC-CCccCCCCCC--CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeC----hhHccCCCccCEE
Confidence 467888776 4566775544 59999999999876665666788999999999999754321 1226788999999
Q ss_pred EEeecCCCceecCCCccccCCCCCCCCccceeeccCCCCCcccccc-cccCCCCCeEEEcCCCC
Q 048004 821 KISRCDDDMVSFPPEDIRLGTTLPLPASLTSLEIGYFPNLERLSSS-IVDLQNLTSLFLYHCPK 883 (943)
Q Consensus 821 ~ls~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~-~~~l~~L~~L~l~~c~~ 883 (943)
++++| .+..++.+.+ ..+++|++|++++| .++.+|.. +..+++|+.|++++++-
T Consensus 82 ~l~~N--~l~~~~~~~~------~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~ 136 (177)
T 2o6r_A 82 YLHEN--KLQSLPNGVF------DKLTQLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNPW 136 (177)
T ss_dssp ECCSS--CCCCCCTTTT------TTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred ECCCC--CccccCHHHh------hCCcccCEEECcCC-cceEeCHHHhcCCcccCEEEecCCCe
Confidence 99987 5666776554 56788888888886 56677665 46678888888888653
No 143
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.89 E-value=1.7e-09 Score=102.50 Aligned_cols=100 Identities=23% Similarity=0.337 Sum_probs=86.1
Q ss_pred ccEEEecCccccccCccccCCCcccEEecCCCCCccc-chhHhhcccCcEEecCCCcchhhchHh-hcccccccccccCC
Q 048004 179 LRAFSLRGYYIFELPDSVGDLRYLRYLNLCGTKIRTL-PESVNKLYNLHSLLLEDCDRLKKLCAD-MGNLAKLHHLKNSN 256 (943)
Q Consensus 179 L~~L~L~~~~i~~lp~~~~~L~~L~~L~L~~n~i~~l-p~~i~~L~~L~~L~L~~~~~l~~lp~~-~~~L~~L~~L~l~~ 256 (943)
.++++++++.++.+|..+. ++|++|+|++|.|+.+ |..++++++|++|+|++| .+..+|.. |.++++|++|++++
T Consensus 11 ~~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNN-QLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCC-CcCccChhhccCCCCCCEEECCC
Confidence 5789999999999998774 8999999999999988 467899999999999995 56666654 68999999999999
Q ss_pred CCccccCCcc-cCCccccccccceeec
Q 048004 257 TKSLEEMPVG-IGKLTSLQTLCNFVVG 282 (943)
Q Consensus 257 ~~~~~~~p~~-i~~L~~L~~L~~~~~~ 282 (943)
|. +..+|.+ ++.+++|++|+...+.
T Consensus 88 N~-l~~~~~~~~~~l~~L~~L~L~~N~ 113 (170)
T 3g39_A 88 NQ-LKSIPRGAFDNLKSLTHIWLLNNP 113 (170)
T ss_dssp SC-CCCCCTTTTTTCTTCCEEECCSSC
T ss_pred Cc-cCEeCHHHhcCCCCCCEEEeCCCC
Confidence 98 8888876 8999999999655443
No 144
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.87 E-value=5.7e-11 Score=116.32 Aligned_cols=126 Identities=19% Similarity=0.215 Sum_probs=101.7
Q ss_pred cccCCCCcceeeeecccCCCCCCCCCCccccccCCCcccEEEecCccccccCccccCCCcccEEecCCCCCcccchhHhh
Q 048004 142 DLYDIQHLRTFLPVMLTNSRPGFLAPSILPKLLKPQRLRAFSLRGYYIFELPDSVGDLRYLRYLNLCGTKIRTLPESVNK 221 (943)
Q Consensus 142 ~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~L~~n~i~~lp~~i~~ 221 (943)
.+..+++|+.|.+..+.- ..++ .+..+++|++|++++|.++.+|..+..+++|++|+|++|.++.+| .++.
T Consensus 43 ~~~~l~~L~~L~ls~n~l-------~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l~-~~~~ 113 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNI-------EKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLS-GIEK 113 (198)
T ss_dssp HHHHTTTCSEEECSEEEE-------SCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCHH-HHHH
T ss_pred HHhcCCCCCEEECCCCCC-------cccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcCC-cccc
Confidence 466788999998765431 2233 444899999999999999999988888899999999999999998 6999
Q ss_pred cccCcEEecCCCcchhhchH--hhcccccccccccCCCCccccCCcc----------cCCcccccccc
Q 048004 222 LYNLHSLLLEDCDRLKKLCA--DMGNLAKLHHLKNSNTKSLEEMPVG----------IGKLTSLQTLC 277 (943)
Q Consensus 222 L~~L~~L~L~~~~~l~~lp~--~~~~L~~L~~L~l~~~~~~~~~p~~----------i~~L~~L~~L~ 277 (943)
+++|++|++++| .+..+|. .+.++++|++|++++|......|.. +..+++|+.|+
T Consensus 114 l~~L~~L~l~~N-~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 114 LVNLRVLYMSNN-KITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp HHHSSEEEESEE-ECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred CCCCCEEECCCC-cCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC
Confidence 999999999995 5666654 7899999999999999833333332 67788888875
No 145
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=98.86 E-value=1.2e-09 Score=139.82 Aligned_cols=89 Identities=19% Similarity=0.308 Sum_probs=78.8
Q ss_pred CcchhhhhcccCCCcchhhhhhhhccCCCCceeChhhHHHHHHHcCCccCCCCCCcHHHHHHHHHHHHHhCCcccccc-C
Q 048004 4 RIIPALAVSYYYLPPTLKQCFAHCSLLPKDYEFEEEEIILLWCAAGFLDHKEDENPSEDLGRDFFKELCSRSFFQQSA-T 82 (943)
Q Consensus 4 ~i~~~L~lSY~~L~~~lk~cfl~cslfpe~~~i~~~~Li~~wiaeG~i~~~~~~~~~~~~~~~~~~~L~~~~ll~~~~-~ 82 (943)
.|+.+|++||+.||+++|.||+|||+||+++.|+++.++..|.++ ++.++.++++|+++||++... +
T Consensus 363 ~~~~~l~~s~~~L~~~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~------------~~~~~~~l~~L~~~sl~~~~~~~ 430 (1249)
T 3sfz_A 363 ALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLWDLE------------TEEVEDILQEFVNKSLLFCNRNG 430 (1249)
T ss_dssp HHHHHHHHHHHTSCTTTHHHHHHGGGSCTTCCEEHHHHHHHHTCC------------HHHHHHHHHHHHHTTSCEEEESS
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHhCccCCCCeeCHHHHHHHhCCC------------HHHHHHHHHHHHhccceEEecCC
Confidence 378899999999999999999999999999999999999999655 467889999999999999754 3
Q ss_pred CCCceehhhHHHHHHHHhcccc
Q 048004 83 DASLFVMHDLINDLARWAAGET 104 (943)
Q Consensus 83 ~~~~~~mHdlv~dla~~i~~~~ 104 (943)
....|+|||+||++|+..+.++
T Consensus 431 ~~~~~~~h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 431 KSFCYYLHDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp SSEEEECCHHHHHHHHHHTGGG
T ss_pred CceEEEecHHHHHHHHhhhhHH
Confidence 3346999999999999987764
No 146
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.79 E-value=3.9e-07 Score=99.67 Aligned_cols=38 Identities=13% Similarity=0.050 Sum_probs=25.4
Q ss_pred cCCCCCcccEEEEcCCcCeeeeccccCCCCCccEEEEec
Q 048004 501 SVSSLPALCKLHIGGCKKVVWRRPLKLRLPKLEELEIEN 539 (943)
Q Consensus 501 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 539 (943)
+|..+.+|+.+.+.. .+..+...+|.++++|+.+++.+
T Consensus 66 AF~~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~ 103 (394)
T 4fs7_A 66 AFQGCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPD 103 (394)
T ss_dssp TTTTCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCT
T ss_pred HhhCCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCC
Confidence 455667777777753 35566667777777777777754
No 147
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.70 E-value=2.3e-07 Score=101.61 Aligned_cols=125 Identities=14% Similarity=0.099 Sum_probs=61.4
Q ss_pred CCCCCCcCeEeecCCCCceecCCCCCCCCCcceEeecccCCCCccccccCCCCccceEEecCCCchhhhhhhhccccCCC
Q 048004 735 LHNLRQLQEIEIWECENLVSFPQGGLPCAKLSMLTVYGCERLKALPKGLHNLTNLHSLEIHGNTKIWKSMIEWGRGFHRF 814 (943)
Q Consensus 735 ~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l 814 (943)
+.++..|+.+.+..+ ....-...+..++.++.+...... .....+..+.+|+.+.+.++- . .++.. .|..+
T Consensus 249 f~~~~~l~~~~~~~~-~~~i~~~~F~~~~~l~~~~~~~~~---i~~~~F~~~~~L~~i~l~~~i--~-~I~~~--aF~~c 319 (394)
T 4fs7_A 249 FYGCTDLESISIQNN-KLRIGGSLFYNCSGLKKVIYGSVI---VPEKTFYGCSSLTEVKLLDSV--K-FIGEE--AFESC 319 (394)
T ss_dssp TTTCSSCCEEEECCT-TCEECSCTTTTCTTCCEEEECSSE---ECTTTTTTCTTCCEEEECTTC--C-EECTT--TTTTC
T ss_pred ccccccceeEEcCCC-cceeeccccccccccceeccCcee---ecccccccccccccccccccc--c-eechh--hhcCC
Confidence 444555555555443 222223334455555555554321 111234555666666664431 1 11111 25566
Q ss_pred CCcCEEEEeecCCCceecCCCccccCCCCCCCCccceeeccCCCCCccccc-ccccCCCCCeEEEc
Q 048004 815 SSLRELKISRCDDDMVSFPPEDIRLGTTLPLPASLTSLEIGYFPNLERLSS-SIVDLQNLTSLFLY 879 (943)
Q Consensus 815 ~~L~~L~ls~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~-~~~~l~~L~~L~l~ 879 (943)
++|+.+++.. .+..++...| ..+++|+.+.+.. +++.+.. .|.++.+|+++++.
T Consensus 320 ~~L~~i~lp~---~v~~I~~~aF------~~c~~L~~i~lp~--~l~~I~~~aF~~C~~L~~i~lp 374 (394)
T 4fs7_A 320 TSLVSIDLPY---LVEEIGKRSF------RGCTSLSNINFPL--SLRKIGANAFQGCINLKKVELP 374 (394)
T ss_dssp TTCCEECCCT---TCCEECTTTT------TTCTTCCEECCCT--TCCEECTTTBTTCTTCCEEEEE
T ss_pred CCCCEEEeCC---cccEEhHHhc------cCCCCCCEEEECc--cccEehHHHhhCCCCCCEEEEC
Confidence 6666666643 2555555544 4566666666654 2555543 34566666666654
No 148
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.66 E-value=1.8e-08 Score=108.46 Aligned_cols=82 Identities=15% Similarity=0.058 Sum_probs=39.1
Q ss_pred EecCc-cccccCccccCCCcccEEecCC-CCCcccc-hhHhhcccCcEEecCCCcchhhchHhhcccccccccccCCCCc
Q 048004 183 SLRGY-YIFELPDSVGDLRYLRYLNLCG-TKIRTLP-ESVNKLYNLHSLLLEDCDRLKKLCADMGNLAKLHHLKNSNTKS 259 (943)
Q Consensus 183 ~L~~~-~i~~lp~~~~~L~~L~~L~L~~-n~i~~lp-~~i~~L~~L~~L~L~~~~~l~~lp~~~~~L~~L~~L~l~~~~~ 259 (943)
+++++ .++.+|. |..+++|++|+|++ |.|+.+| ..|++|++|++|+|++|......|..|++|++|++|+|++|.
T Consensus 14 ~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~- 91 (347)
T 2ifg_A 14 RCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNA- 91 (347)
T ss_dssp ECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSC-
T ss_pred EcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCc-
Confidence 44444 4555555 55555555555553 5555444 334555555555555532222223334555555555555554
Q ss_pred cccCCcc
Q 048004 260 LEEMPVG 266 (943)
Q Consensus 260 ~~~~p~~ 266 (943)
+..+|..
T Consensus 92 l~~~~~~ 98 (347)
T 2ifg_A 92 LESLSWK 98 (347)
T ss_dssp CSCCCST
T ss_pred cceeCHH
Confidence 4444444
No 149
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=98.54 E-value=4.3e-08 Score=113.96 Aligned_cols=86 Identities=20% Similarity=0.324 Sum_probs=74.5
Q ss_pred CcchhhhhcccCCCcchhhhhhhhccCCCCceeChhhHHHHHHHcCCccCCCCCCcHHHHHHHHHHHHHhCCcccccc-C
Q 048004 4 RIIPALAVSYYYLPPTLKQCFAHCSLLPKDYEFEEEEIILLWCAAGFLDHKEDENPSEDLGRDFFKELCSRSFFQQSA-T 82 (943)
Q Consensus 4 ~i~~~L~lSY~~L~~~lk~cfl~cslfpe~~~i~~~~Li~~wiaeG~i~~~~~~~~~~~~~~~~~~~L~~~~ll~~~~-~ 82 (943)
.|..+++.||+.||++.|.||++||+||+|+.|+++.++..|.++ .+.+..++++|+++||++... +
T Consensus 363 ~l~~~l~~s~~~L~~~~~~~l~~la~f~~~~~i~~~~l~~l~~~~------------~~~~~~~l~~L~~~~Ll~~~~~~ 430 (591)
T 1z6t_A 363 ALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDME------------TEEVEDILQEFVNKSLLFCDRNG 430 (591)
T ss_dssp HHHHHHHHHHHTSCTTTHHHHHHGGGCCTTCCEEHHHHHHHHTCC------------HHHHHHHHHHHHHTTSSEEEEET
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHccccCCCCccCHHHHHHHhccC------------HHHHHHHHHHHHhCcCeEEecCC
Confidence 467899999999999999999999999999999999999999653 245788999999999998643 3
Q ss_pred CCCceehhhHHHHHHHHhc
Q 048004 83 DASLFVMHDLINDLARWAA 101 (943)
Q Consensus 83 ~~~~~~mHdlv~dla~~i~ 101 (943)
....|+|||+||++++..+
T Consensus 431 ~~~~~~~H~lv~~~~~~~~ 449 (591)
T 1z6t_A 431 KSFRYYLHDLQVDFLTEKN 449 (591)
T ss_dssp TEEEEECCHHHHHHHHHHT
T ss_pred CccEEEEcHHHHHHHHhhh
Confidence 3457999999999998874
No 150
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.52 E-value=6.1e-06 Score=90.18 Aligned_cols=108 Identities=11% Similarity=0.145 Sum_probs=60.3
Q ss_pred ccCCCCCCcCeEeecCCCCceecCCCCCCCCCcceEeecccCCCCccccccCCCCccceEEecCCCchhhhhhhhccccC
Q 048004 733 SGLHNLRQLQEIEIWECENLVSFPQGGLPCAKLSMLTVYGCERLKALPKGLHNLTNLHSLEIHGNTKIWKSMIEWGRGFH 812 (943)
Q Consensus 733 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~ 812 (943)
..|.++..|+.+.+... ....-...+..+++|+.+.+.. .....-...|.++++|+.+++..+- . .++.. .|.
T Consensus 259 ~aF~~c~~L~~i~lp~~-~~~I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~v--~-~I~~~--aF~ 331 (394)
T 4gt6_A 259 HAFDSCAYLASVKMPDS-VVSIGTGAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEGI--T-QILDD--AFA 331 (394)
T ss_dssp TTTTTCSSCCEEECCTT-CCEECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTTC--C-EECTT--TTT
T ss_pred ceeeecccccEEecccc-cceecCcccccccccccccCCC-cccccCceeecCCCCcCEEEeCCcc--c-EehHh--Hhh
Confidence 34666777777777543 2232333455667777777753 2222223356667777777775441 1 12221 266
Q ss_pred CCCCcCEEEEeecCCCceecCCCccccCCCCCCCCccceeeccC
Q 048004 813 RFSSLRELKISRCDDDMVSFPPEDIRLGTTLPLPASLTSLEIGY 856 (943)
Q Consensus 813 ~l~~L~~L~ls~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~ 856 (943)
.+++|+.+.|.. .+..+....| ..+++|+.+++.+
T Consensus 332 ~C~~L~~i~ip~---sv~~I~~~aF------~~C~~L~~i~~~~ 366 (394)
T 4gt6_A 332 GCEQLERIAIPS---SVTKIPESAF------SNCTALNNIEYSG 366 (394)
T ss_dssp TCTTCCEEEECT---TCCBCCGGGG------TTCTTCCEEEESS
T ss_pred CCCCCCEEEECc---ccCEEhHhHh------hCCCCCCEEEECC
Confidence 677777777754 2555655554 4566666666665
No 151
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.39 E-value=4.3e-07 Score=97.60 Aligned_cols=93 Identities=22% Similarity=0.093 Sum_probs=64.2
Q ss_pred CcccccccCCCCCCcCeEeecC-CCCceecCCCCCCCCCcceEeecccCCCCccccccCCCCccceEEecCCCchhhhhh
Q 048004 727 NLKFLPSGLHNLRQLQEIEIWE-CENLVSFPQGGLPCAKLSMLTVYGCERLKALPKGLHNLTNLHSLEIHGNTKIWKSMI 805 (943)
Q Consensus 727 ~l~~lp~~~~~l~~L~~L~l~~-~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~ 805 (943)
.++.+|. +..+++|++|+|++ |...+..+..+..+++|+.|+|++|.+.+..|..|.++++|+.|+|++|.......
T Consensus 20 ~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~- 97 (347)
T 2ifg_A 20 ALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSW- 97 (347)
T ss_dssp CCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCS-
T ss_pred CCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCH-
Confidence 5666777 77788888888876 54444444567778888888888887777667777888888888888886443211
Q ss_pred hhccccCCCCCcCEEEEeec
Q 048004 806 EWGRGFHRFSSLRELKISRC 825 (943)
Q Consensus 806 ~~~~~~~~l~~L~~L~ls~n 825 (943)
..+..++ |++|+|++|
T Consensus 98 ---~~~~~~~-L~~l~l~~N 113 (347)
T 2ifg_A 98 ---KTVQGLS-LQELVLSGN 113 (347)
T ss_dssp ---TTTCSCC-CCEEECCSS
T ss_pred ---HHcccCC-ceEEEeeCC
Confidence 1144444 888888876
No 152
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.30 E-value=3.6e-08 Score=106.15 Aligned_cols=140 Identities=16% Similarity=0.116 Sum_probs=82.0
Q ss_pred CCCcCeEeecCCCCceecCCCC-CCCCCcceEeecccCCCCccccc----c-CCCCccceEEecCCCchhhhhhhhcccc
Q 048004 738 LRQLQEIEIWECENLVSFPQGG-LPCAKLSMLTVYGCERLKALPKG----L-HNLTNLHSLEIHGNTKIWKSMIEWGRGF 811 (943)
Q Consensus 738 l~~L~~L~l~~~~~~~~~~~~~-~~l~~L~~L~l~~~~~~~~~~~~----l-~~l~~L~~L~l~~n~~~~~~~~~~~~~~ 811 (943)
.++|++|++++|.....-...+ ..+++|++|++++|.+....... + ...++|++|++++|.........++..+
T Consensus 100 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L 179 (372)
T 3un9_A 100 RHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGL 179 (372)
T ss_dssp SSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHH
T ss_pred CCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHH
Confidence 3678888888886543222222 23457888888888664322222 2 3467788888888876554444444445
Q ss_pred CCCCCcCEEEEeecCCCceecCCCccccCCCCCCCCccceeeccCCCCCcc-----cccccccCCCCCeEEEcCCC
Q 048004 812 HRFSSLRELKISRCDDDMVSFPPEDIRLGTTLPLPASLTSLEIGYFPNLER-----LSSSIVDLQNLTSLFLYHCP 882 (943)
Q Consensus 812 ~~l~~L~~L~ls~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~-----l~~~~~~l~~L~~L~l~~c~ 882 (943)
..+++|++|+|++|. +...... .....+...++|++|++++|. ++. ++..+...++|++|++++|+
T Consensus 180 ~~~~~L~~L~Ls~N~--l~~~g~~--~L~~~L~~~~~L~~L~Ls~N~-i~~~g~~~l~~~L~~~~~L~~L~Ls~N~ 250 (372)
T 3un9_A 180 AGNTSVTHLSLLHTG--LGDEGLE--LLAAQLDRNRQLQELNVAYNG-AGDTAALALARAAREHPSLELLHLYFNE 250 (372)
T ss_dssp HTCSSCCEEECTTSS--CHHHHHH--HHHHHGGGCSCCCEEECCSSC-CCHHHHHHHHHHHHHCSSCCEEECTTSS
T ss_pred hcCCCcCEEeCCCCC--CCcHHHH--HHHHHHhcCCCcCeEECCCCC-CCHHHHHHHHHHHHhCCCCCEEeccCCC
Confidence 677888888888862 2221100 000111345678888888864 442 33334566888888888864
No 153
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.30 E-value=3.3e-07 Score=97.56 Aligned_cols=84 Identities=11% Similarity=0.064 Sum_probs=50.3
Q ss_pred CCCCcCeEeecCCCCceecCCC---CCCCCCcceEeecccCCCCc----cccccCCCCccceEEecCCCchhhhhhhhcc
Q 048004 737 NLRQLQEIEIWECENLVSFPQG---GLPCAKLSMLTVYGCERLKA----LPKGLHNLTNLHSLEIHGNTKIWKSMIEWGR 809 (943)
Q Consensus 737 ~l~~L~~L~l~~~~~~~~~~~~---~~~l~~L~~L~l~~~~~~~~----~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~ 809 (943)
.+++|+.|++.+|......+.. ...+++|++|+|+.|.+... ++..+..+++|+.|++++|.........+..
T Consensus 250 ~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~ 329 (362)
T 2ra8_A 250 RFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQK 329 (362)
T ss_dssp TCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHH
T ss_pred CCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHH
Confidence 4688888888887655322211 12467888888888765432 3334456788888888888644333222111
Q ss_pred ccCCCCCcCEEEEeec
Q 048004 810 GFHRFSSLRELKISRC 825 (943)
Q Consensus 810 ~~~~l~~L~~L~ls~n 825 (943)
. + ..+++++.+
T Consensus 330 a---l--g~~~~~~~~ 340 (362)
T 2ra8_A 330 S---L--PMKIDVSDS 340 (362)
T ss_dssp H---C--CSEEECCSB
T ss_pred H---c--CCEEEecCC
Confidence 0 1 356777775
No 154
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.28 E-value=7.8e-05 Score=80.93 Aligned_cols=104 Identities=14% Similarity=0.112 Sum_probs=45.1
Q ss_pred CCCCCCcCeEeecCCCCceecC-CCCCCCCCcceEeecccCCCCccccccCCCCccceEEecCCCchhhhhhhhccccCC
Q 048004 735 LHNLRQLQEIEIWECENLVSFP-QGGLPCAKLSMLTVYGCERLKALPKGLHNLTNLHSLEIHGNTKIWKSMIEWGRGFHR 813 (943)
Q Consensus 735 ~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~ 813 (943)
+.++..|+.+.+..+ +..+. ..+..+.+|+.+.+..+ ....-...+.++++|+.+.+.++.... ++. ..|.+
T Consensus 236 f~~~~~L~~i~lp~~--v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~--I~~--~aF~~ 308 (379)
T 4h09_A 236 FYGMKALDEIAIPKN--VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIET--LEP--RVFMD 308 (379)
T ss_dssp TTTCSSCCEEEECTT--CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCE--ECT--TTTTT
T ss_pred ccCCccceEEEcCCC--ccEeCccccceeehhcccccccc-ceeccccccccccccccccccccccce--ehh--hhhcC
Confidence 344555555555433 22222 23344555555555432 111112234555555555554432111 111 12555
Q ss_pred CCCcCEEEEeecCCCceecCCCccccCCCCCCCCccceeec
Q 048004 814 FSSLRELKISRCDDDMVSFPPEDIRLGTTLPLPASLTSLEI 854 (943)
Q Consensus 814 l~~L~~L~ls~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l 854 (943)
+++|+.++|.. .+..+....| ..+++|+++.+
T Consensus 309 c~~L~~i~lp~---~l~~I~~~aF------~~C~~L~~i~i 340 (379)
T 4h09_A 309 CVKLSSVTLPT---ALKTIQVYAF------KNCKALSTISY 340 (379)
T ss_dssp CTTCCEEECCT---TCCEECTTTT------TTCTTCCCCCC
T ss_pred CCCCCEEEcCc---cccEEHHHHh------hCCCCCCEEEE
Confidence 55555555543 2444444443 34445555444
No 155
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.23 E-value=0.00021 Score=77.88 Aligned_cols=106 Identities=13% Similarity=0.150 Sum_probs=57.6
Q ss_pred CCCCCCCcceEeecccCCCCccccccCCCCccceEEecCCCchhhhhhhhccccCCCCCcCEEEEeecCCCceecCCCcc
Q 048004 758 GGLPCAKLSMLTVYGCERLKALPKGLHNLTNLHSLEIHGNTKIWKSMIEWGRGFHRFSSLRELKISRCDDDMVSFPPEDI 837 (943)
Q Consensus 758 ~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~~~~~~~ 837 (943)
.|..+.+|+.+.+.... ...-...+.++++|+.+.+...- . ..+.. .|..+++|+.++|.. .++.+.+..|
T Consensus 260 aF~~c~~L~~i~lp~~~-~~I~~~aF~~c~~L~~i~l~~~i--~-~I~~~--aF~~c~~L~~i~lp~---~v~~I~~~aF 330 (394)
T 4gt6_A 260 AFDSCAYLASVKMPDSV-VSIGTGAFMNCPALQDIEFSSRI--T-ELPES--VFAGCISLKSIDIPE---GITQILDDAF 330 (394)
T ss_dssp TTTTCSSCCEEECCTTC-CEECTTTTTTCTTCCEEECCTTC--C-EECTT--TTTTCTTCCEEECCT---TCCEECTTTT
T ss_pred eeeecccccEEeccccc-ceecCcccccccccccccCCCcc--c-ccCce--eecCCCCcCEEEeCC---cccEehHhHh
Confidence 35566677777765432 22223445666677776664321 1 12221 266667777777654 2555555554
Q ss_pred ccCCCCCCCCccceeeccCCCCCccccc-ccccCCCCCeEEEcC
Q 048004 838 RLGTTLPLPASLTSLEIGYFPNLERLSS-SIVDLQNLTSLFLYH 880 (943)
Q Consensus 838 ~~~~~~~~l~~L~~L~l~~~~~l~~l~~-~~~~l~~L~~L~l~~ 880 (943)
..+++|+++.+.. .++.+.. .|.++.+|+++++.+
T Consensus 331 ------~~C~~L~~i~ip~--sv~~I~~~aF~~C~~L~~i~~~~ 366 (394)
T 4gt6_A 331 ------AGCEQLERIAIPS--SVTKIPESAFSNCTALNNIEYSG 366 (394)
T ss_dssp ------TTCTTCCEEEECT--TCCBCCGGGGTTCTTCCEEEESS
T ss_pred ------hCCCCCCEEEECc--ccCEEhHhHhhCCCCCCEEEECC
Confidence 4566666666643 3555543 345666666666654
No 156
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.18 E-value=1.5e-06 Score=92.59 Aligned_cols=64 Identities=11% Similarity=0.111 Sum_probs=28.1
Q ss_pred CCCcceEeecccCCCCcccccc---CCCCccceEEecCCCchhhhhhhhccccCCCCCcCEEEEeec
Q 048004 762 CAKLSMLTVYGCERLKALPKGL---HNLTNLHSLEIHGNTKIWKSMIEWGRGFHRFSSLRELKISRC 825 (943)
Q Consensus 762 l~~L~~L~l~~~~~~~~~~~~l---~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~l~~L~~L~ls~n 825 (943)
+|+|++|++.+|.+....+..+ ..+++|++|+|+.|.........+...+..+++|+.|++++|
T Consensus 251 ~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n 317 (362)
T 2ra8_A 251 FPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYN 317 (362)
T ss_dssp CTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSB
T ss_pred CCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCC
Confidence 4566666666555432221111 234555556665554333222222222234455555555544
No 157
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.16 E-value=3.2e-07 Score=98.77 Aligned_cols=115 Identities=15% Similarity=0.154 Sum_probs=58.0
Q ss_pred hccCCccEEeecCCCCcccchhhhhhHHhhhhhcccccccEEEeecCCCCC----CCCccccCccccceEEeccCCCccc
Q 048004 555 QDICSLKRLTIDSCPKLQSLVAEEEKDQQQQLCELSCRLEYLTLSGCQGLV----KLPQSSLSLNSLREIEIYKCSSLVS 630 (943)
Q Consensus 555 ~~l~~L~~L~l~~~~~L~~l~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~----~l~~~~~~l~~L~~L~l~~~~~l~~ 630 (943)
..+++|+.|++++| .++......... .+....++|++|++++|.... .++..+...++|++|++++|. ++.
T Consensus 123 ~~L~~L~~L~Ls~n-~l~~~~~~~L~~---~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~-l~~ 197 (372)
T 3un9_A 123 PVFLRARKLGLQLN-SLGPEACKDLRD---LLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTG-LGD 197 (372)
T ss_dssp HHHHTEEEEECCSS-CCCHHHHHHHHH---HHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSS-CHH
T ss_pred HHHHhccHhhcCCC-CCCHHHHHHHHH---HHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCC-CCc
Confidence 34456666666666 333221111111 111123567777777775432 233344566777777777774 332
Q ss_pred c-----C-CccCCCCccEEEeccCCCCccccccccc---CCCCCCCeEEEeecC
Q 048004 631 F-----P-EVALPSKLKKIEIRECDALKSLPEAWMC---GTNSSLEILSIQGCH 675 (943)
Q Consensus 631 ~-----~-~~~~~~~L~~L~l~~~~~l~~~~~~~~~---~~~~~L~~L~l~~~~ 675 (943)
. . .+...++|++|++++|.. +......+. ...++|++|++++|+
T Consensus 198 ~g~~~L~~~L~~~~~L~~L~Ls~N~i-~~~g~~~l~~~L~~~~~L~~L~Ls~N~ 250 (372)
T 3un9_A 198 EGLELLAAQLDRNRQLQELNVAYNGA-GDTAALALARAAREHPSLELLHLYFNE 250 (372)
T ss_dssp HHHHHHHHHGGGCSCCCEEECCSSCC-CHHHHHHHHHHHHHCSSCCEEECTTSS
T ss_pred HHHHHHHHHHhcCCCcCeEECCCCCC-CHHHHHHHHHHHHhCCCCCEEeccCCC
Confidence 1 1 123455777777777543 222111100 244677777777776
No 158
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.03 E-value=7.9e-06 Score=75.66 Aligned_cols=39 Identities=8% Similarity=0.023 Sum_probs=22.8
Q ss_pred CcceEeecccCCCCccccccCCCCccceEEecCCCchhh
Q 048004 764 KLSMLTVYGCERLKALPKGLHNLTNLHSLEIHGNTKIWK 802 (943)
Q Consensus 764 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~ 802 (943)
+|+.|++++|.+...--..+.++++|+.|+|++|..+++
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD 100 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIED 100 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCH
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCH
Confidence 566666666654332223345666777777777765543
No 159
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.02 E-value=0.00084 Score=72.67 Aligned_cols=130 Identities=14% Similarity=0.072 Sum_probs=89.3
Q ss_pred ccCCCCCCcCeEeecCCCCceecCCCCCCCCCcceEeecccCCCCccccccCCCCccceEEecCCCchhhhhhhhccccC
Q 048004 733 SGLHNLRQLQEIEIWECENLVSFPQGGLPCAKLSMLTVYGCERLKALPKGLHNLTNLHSLEIHGNTKIWKSMIEWGRGFH 812 (943)
Q Consensus 733 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~ 812 (943)
..+..+.+|+.+.+..+ ....-...+..+..|+.+.+..+ ....-...+.++.+|+.+.+..+-. ..+.. .|.
T Consensus 211 ~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~i~---~i~~~--aF~ 283 (379)
T 4h09_A 211 YGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAKVK---TVPYL--LCS 283 (379)
T ss_dssp TTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCCCS---EECTT--TTT
T ss_pred cccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhccccccccce---ecccc--ccc
Confidence 34566788888888654 23333345677889999999764 3223345678889999999865521 12222 388
Q ss_pred CCCCcCEEEEeecCCCceecCCCccccCCCCCCCCccceeeccCCCCCccccc-ccccCCCCCeEEEc
Q 048004 813 RFSSLRELKISRCDDDMVSFPPEDIRLGTTLPLPASLTSLEIGYFPNLERLSS-SIVDLQNLTSLFLY 879 (943)
Q Consensus 813 ~l~~L~~L~ls~n~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~-~~~~l~~L~~L~l~ 879 (943)
.+++|+.+.+.++ .+..+++..| ..+++|+++.+.. .++.|.. .|.++.+|+++.+-
T Consensus 284 ~c~~L~~i~l~~~--~i~~I~~~aF------~~c~~L~~i~lp~--~l~~I~~~aF~~C~~L~~i~ip 341 (379)
T 4h09_A 284 GCSNLTKVVMDNS--AIETLEPRVF------MDCVKLSSVTLPT--ALKTIQVYAFKNCKALSTISYP 341 (379)
T ss_dssp TCTTCCEEEECCT--TCCEECTTTT------TTCTTCCEEECCT--TCCEECTTTTTTCTTCCCCCCC
T ss_pred ccccccccccccc--ccceehhhhh------cCCCCCCEEEcCc--cccEEHHHHhhCCCCCCEEEEC
Confidence 8999999999765 6778887776 6788999998865 4777765 35666777776653
No 160
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.96 E-value=3.5e-06 Score=78.05 Aligned_cols=87 Identities=10% Similarity=0.107 Sum_probs=54.2
Q ss_pred cccEEEeecCCCCCCCCccccCccccceEEeccCCCccccC--CccC----CCCccEEEeccCCCCcccccccccCCCCC
Q 048004 592 RLEYLTLSGCQGLVKLPQSSLSLNSLREIEIYKCSSLVSFP--EVAL----PSKLKKIEIRECDALKSLPEAWMCGTNSS 665 (943)
Q Consensus 592 ~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~~--~~~~----~~~L~~L~l~~~~~l~~~~~~~~~~~~~~ 665 (943)
.|++|++++|.....--..+..+++|++|++++|..+++.. .+.. .++|++|+|++|..+++-....+ ..+++
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L-~~~~~ 140 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIAL-HHFRN 140 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHG-GGCTT
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHH-hcCCC
Confidence 57777777776433322345567778888888877665532 1222 24677777777777766544443 45677
Q ss_pred CCeEEEeecCCCcc
Q 048004 666 LEILSIQGCHSLTY 679 (943)
Q Consensus 666 L~~L~l~~~~~l~~ 679 (943)
|+.|++++|+.+++
T Consensus 141 L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 141 LKYLFLSDLPGVKE 154 (176)
T ss_dssp CCEEEEESCTTCCC
T ss_pred CCEEECCCCCCCCc
Confidence 77777777776654
No 161
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.80 E-value=1.6e-05 Score=79.89 Aligned_cols=81 Identities=22% Similarity=0.203 Sum_probs=47.0
Q ss_pred cCCCcccEEecCCCCCcccc---hhHhhcccCcEEecCCCcchhhchHhhcccc--cccccccCCCCccccCCc------
Q 048004 197 GDLRYLRYLNLCGTKIRTLP---ESVNKLYNLHSLLLEDCDRLKKLCADMGNLA--KLHHLKNSNTKSLEEMPV------ 265 (943)
Q Consensus 197 ~~L~~L~~L~L~~n~i~~lp---~~i~~L~~L~~L~L~~~~~l~~lp~~~~~L~--~L~~L~l~~~~~~~~~p~------ 265 (943)
.++++|++|+|++|.|+.++ ..++.+++|++|+|++| .+..+ .++..+. +|++|++++|.....+|.
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N-~i~~~-~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~ 244 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGN-ELKSE-RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS 244 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTS-CCCSG-GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCC-ccCCc-hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence 34666777777777766543 44566777777777764 34433 2344444 677777777764334442
Q ss_pred -ccCCccccccccce
Q 048004 266 -GIGKLTSLQTLCNF 279 (943)
Q Consensus 266 -~i~~L~~L~~L~~~ 279 (943)
.+..+++|+.|+..
T Consensus 245 ~il~~~P~L~~LDg~ 259 (267)
T 3rw6_A 245 AIRERFPKLLRLDGH 259 (267)
T ss_dssp HHHHHCTTCCEESSC
T ss_pred HHHHHCcccCeECCc
Confidence 25566666666543
No 162
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.64 E-value=1e-05 Score=81.25 Aligned_cols=79 Identities=22% Similarity=0.315 Sum_probs=61.9
Q ss_pred CCCcccEEEecCccccccC---ccccCCCcccEEecCCCCCcccchhHhhcc--cCcEEecCCCcchhhch-------Hh
Q 048004 175 KPQRLRAFSLRGYYIFELP---DSVGDLRYLRYLNLCGTKIRTLPESVNKLY--NLHSLLLEDCDRLKKLC-------AD 242 (943)
Q Consensus 175 ~l~~L~~L~L~~~~i~~lp---~~~~~L~~L~~L~L~~n~i~~lp~~i~~L~--~L~~L~L~~~~~l~~lp-------~~ 242 (943)
++++|+.|+|++|.+..++ ..+..+++|++|+|++|.|+.+ .++..+. +|+.|+|++|.....+| ..
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~i 246 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE-RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAI 246 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG-GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHH
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc-hhhhhcccCCcceEEccCCcCccccCcchhHHHHH
Confidence 5789999999999987653 5667899999999999999877 4456666 89999999976554444 33
Q ss_pred hccccccccccc
Q 048004 243 MGNLAKLHHLKN 254 (943)
Q Consensus 243 ~~~L~~L~~L~l 254 (943)
+..+++|+.||-
T Consensus 247 l~~~P~L~~LDg 258 (267)
T 3rw6_A 247 RERFPKLLRLDG 258 (267)
T ss_dssp HHHCTTCCEESS
T ss_pred HHHCcccCeECC
Confidence 678899998874
No 163
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.50 E-value=1.7e-05 Score=75.81 Aligned_cols=91 Identities=19% Similarity=0.177 Sum_probs=46.2
Q ss_pred CCCCCCcCeEeecCC-CCce----ecCCCCCCCCCcceEeecccCCCC----ccccccCCCCccceEEecCCCchhhhhh
Q 048004 735 LHNLRQLQEIEIWEC-ENLV----SFPQGGLPCAKLSMLTVYGCERLK----ALPKGLHNLTNLHSLEIHGNTKIWKSMI 805 (943)
Q Consensus 735 ~~~l~~L~~L~l~~~-~~~~----~~~~~~~~l~~L~~L~l~~~~~~~----~~~~~l~~l~~L~~L~l~~n~~~~~~~~ 805 (943)
+...++|++|++++| .... .+...+...++|++|+|++|.+.. .+...+...++|++|+|++|........
T Consensus 32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~ 111 (185)
T 1io0_A 32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGIL 111 (185)
T ss_dssp HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHH
Confidence 444566666666665 3321 122223334566666666665432 1222334445666666666655544443
Q ss_pred hhccccCCCCCcCEEEE--eec
Q 048004 806 EWGRGFHRFSSLRELKI--SRC 825 (943)
Q Consensus 806 ~~~~~~~~l~~L~~L~l--s~n 825 (943)
.+...+...++|++|+| ++|
T Consensus 112 ~l~~~L~~n~~L~~L~L~~~~N 133 (185)
T 1io0_A 112 ALVEALQSNTSLIELRIDNQSQ 133 (185)
T ss_dssp HHHHGGGGCSSCCEEECCCCSS
T ss_pred HHHHHHHhCCCceEEEecCCCC
Confidence 34444555566666666 444
No 164
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.45 E-value=5.7e-05 Score=72.10 Aligned_cols=84 Identities=18% Similarity=0.192 Sum_probs=45.6
Q ss_pred CCCcccEEEecCc-cccc-----cCccccCCCcccEEecCCCCCcc-----cchhHhhcccCcEEecCCCcchh----hc
Q 048004 175 KPQRLRAFSLRGY-YIFE-----LPDSVGDLRYLRYLNLCGTKIRT-----LPESVNKLYNLHSLLLEDCDRLK----KL 239 (943)
Q Consensus 175 ~l~~L~~L~L~~~-~i~~-----lp~~~~~L~~L~~L~L~~n~i~~-----lp~~i~~L~~L~~L~L~~~~~l~----~l 239 (943)
..+.|+.|+|++| .+.. +...+...++|++|+|++|.|.. +...+...++|++|+|++|..-. .+
T Consensus 34 ~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l 113 (185)
T 1io0_A 34 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILAL 113 (185)
T ss_dssp TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHH
T ss_pred cCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHH
Confidence 4456666666666 5432 33444555666666666666642 33344455666666666643221 23
Q ss_pred hHhhccccccccccc--CCCC
Q 048004 240 CADMGNLAKLHHLKN--SNTK 258 (943)
Q Consensus 240 p~~~~~L~~L~~L~l--~~~~ 258 (943)
...+...+.|++|++ ++|.
T Consensus 114 ~~~L~~n~~L~~L~L~~~~N~ 134 (185)
T 1io0_A 114 VEALQSNTSLIELRIDNQSQP 134 (185)
T ss_dssp HHGGGGCSSCCEEECCCCSSC
T ss_pred HHHHHhCCCceEEEecCCCCC
Confidence 444555566666666 5555
No 165
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.30 E-value=0.0047 Score=54.40 Aligned_cols=52 Identities=19% Similarity=0.172 Sum_probs=41.9
Q ss_pred cEEEecCcccc--ccCccccCCCcccEEecCCCCCcccch-hHhhcccCcEEecCCC
Q 048004 180 RAFSLRGYYIF--ELPDSVGDLRYLRYLNLCGTKIRTLPE-SVNKLYNLHSLLLEDC 233 (943)
Q Consensus 180 ~~L~L~~~~i~--~lp~~~~~L~~L~~L~L~~n~i~~lp~-~i~~L~~L~~L~L~~~ 233 (943)
.+++.+++.++ .+|..+. .+|++|+|++|+|+.+|. .|..+++|++|+|++|
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 65 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGAN 65 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSS
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCC
Confidence 36788888887 8887654 468899999999999985 4688888999998886
No 166
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=94.88 E-value=0.008 Score=56.70 Aligned_cols=91 Identities=12% Similarity=0.090 Sum_probs=55.4
Q ss_pred CCCCCCcCeEeecCCCCcee-----cCCCCCCCCCcceEeecccCCCC----ccccccCCCCccceEEecCCCchhhhhh
Q 048004 735 LHNLRQLQEIEIWECENLVS-----FPQGGLPCAKLSMLTVYGCERLK----ALPKGLHNLTNLHSLEIHGNTKIWKSMI 805 (943)
Q Consensus 735 ~~~l~~L~~L~l~~~~~~~~-----~~~~~~~l~~L~~L~l~~~~~~~----~~~~~l~~l~~L~~L~l~~n~~~~~~~~ 805 (943)
+.+-+.|++|+|++|+.++. +...+..-+.|+.|+|++|.+.. .+...+..-+.|+.|+|++|........
T Consensus 37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ 116 (197)
T 1pgv_A 37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLA 116 (197)
T ss_dssp HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHH
T ss_pred HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHH
Confidence 34457788888877533332 22233344678888888876642 2233444556788888888876655555
Q ss_pred hhccccCCCCCcCEEEEeec
Q 048004 806 EWGRGFHRFSSLRELKISRC 825 (943)
Q Consensus 806 ~~~~~~~~l~~L~~L~ls~n 825 (943)
.+...+..-+.|++|+|++|
T Consensus 117 ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 117 RLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp HHHHHTTTTCCCSEEECCCC
T ss_pred HHHHHHhhCCceeEEECCCC
Confidence 55555666666777777654
No 167
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=92.99 E-value=0.11 Score=45.54 Aligned_cols=56 Identities=18% Similarity=0.124 Sum_probs=38.9
Q ss_pred eEeecCCCCce--ecCCCCCCCCCcceEeecccCCCCccccccCCCCccceEEecCCCchh
Q 048004 743 EIEIWECENLV--SFPQGGLPCAKLSMLTVYGCERLKALPKGLHNLTNLHSLEIHGNTKIW 801 (943)
Q Consensus 743 ~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~ 801 (943)
.++.+++ .+. .+|..+. ++|++|+|++|.+...-+..|..+++|+.|+|++|+..-
T Consensus 12 ~v~Cs~~-~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~C 69 (130)
T 3rfe_A 12 LVDCGRR-GLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRC 69 (130)
T ss_dssp EEECCSS-CCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBC
T ss_pred EEEeCCC-CCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeec
Confidence 5565555 344 6665543 378888888887765555667888888888888887543
No 168
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=92.43 E-value=0.15 Score=48.06 Aligned_cols=84 Identities=15% Similarity=0.162 Sum_probs=55.4
Q ss_pred CCCcccEEEecCc-cccc-----cCccccCCCcccEEecCCCCCc-----ccchhHhhcccCcEEecCCCcch----hhc
Q 048004 175 KPQRLRAFSLRGY-YIFE-----LPDSVGDLRYLRYLNLCGTKIR-----TLPESVNKLYNLHSLLLEDCDRL----KKL 239 (943)
Q Consensus 175 ~l~~L~~L~L~~~-~i~~-----lp~~~~~L~~L~~L~L~~n~i~-----~lp~~i~~L~~L~~L~L~~~~~l----~~l 239 (943)
.-+.|+.|+|+++ .|.. +-+.+..=+.|+.|+|++|.|. .|-+.+..-+.|++|+|++|..- ..+
T Consensus 39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~al 118 (197)
T 1pgv_A 39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL 118 (197)
T ss_dssp TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHH
Confidence 3467888888875 5543 3355666678888888888886 34455666788888888886432 223
Q ss_pred hHhhcccccccccccCCCC
Q 048004 240 CADMGNLAKLHHLKNSNTK 258 (943)
Q Consensus 240 p~~~~~L~~L~~L~l~~~~ 258 (943)
-..+..=+.|++|+++++.
T Consensus 119 a~aL~~N~tL~~L~L~n~~ 137 (197)
T 1pgv_A 119 LRSTLVTQSIVEFKADNQR 137 (197)
T ss_dssp HHHTTTTCCCSEEECCCCS
T ss_pred HHHHhhCCceeEEECCCCc
Confidence 3334455668888887653
No 169
>3lqv_P Splicing factor 3B subunit 1; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} PDB: 2f9d_P 2f9j_P
Probab=21.92 E-value=28 Score=22.18 Aligned_cols=9 Identities=22% Similarity=0.885 Sum_probs=7.8
Q ss_pred ccCCCCcee
Q 048004 28 SLLPKDYEF 36 (943)
Q Consensus 28 slfpe~~~i 36 (943)
++||+||+|
T Consensus 30 ~mLP~GYkI 38 (39)
T 3lqv_P 30 AMFPEGYKV 38 (39)
T ss_dssp HTCCSSEEE
T ss_pred HhCCCCccc
Confidence 689999987
Done!