BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048006
(833 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 187 bits (474), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 194/601 (32%), Positives = 270/601 (44%), Gaps = 95/601 (15%)
Query: 249 NQLQGSIPESFQHMVYLEHLRLSFNELEGGIPKFFGNMCSLITLNLSNNKLSGQLSEIIQ 308
N++ G + S V LE L +S N GIP F G+ +L L++S NKLSG S I
Sbjct: 188 NKISGDVDVS--RCVNLEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKLSGDFSRAIS 244
Query: 309 NLSSGCLEN-------------SLKSL-YL---ENSLTGVISESFFSNISNLKELHLANN 351
+ L N LKSL YL EN TG I + L L L+ N
Sbjct: 245 TCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGN 304
Query: 352 PLVLKLSHDWVPPF-----QLIIISLSSCKIGPHFP-KWLQTQNQIELLDISNTGISDTI 405
+ VPPF L ++LSS P L +++LD+S S +
Sbjct: 305 HF-----YGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGEL 359
Query: 406 PDWFWNLSNKFSFLDLASNQIKGK-LPNLSSRFGTSNPGIDISSNHFEGLIXXXXXXXXX 464
P+ NLS LDL+SN G LPNL + + + +N F G I
Sbjct: 360 PESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNC-- 417
Query: 465 XXXXXXXXXGSISFLCSISGSKLTYVDLSSNLLSGKLPDCWWTFDSLVILNLENNSFSGR 524
S+L + LS N LSG +P + L L L N G
Sbjct: 418 --------------------SELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGE 457
Query: 525 IPDSMGFLQNIQTLSLHNNRLTGELSSSFRNCSQLRLLDLGKNALYGEIPTWMGESLSNL 584
IP + +++ ++TL L N LTGE+ S NC+ L + L N L GEIP W+G L NL
Sbjct: 458 IPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGR-LENL 516
Query: 585 IVLSLKSNKFHGKIPFQLCQLAFLQVLDLSLNNISGKIP--------KCFNNFTAMTQER 636
+L L +N F G IP +L L LDL+ N +G IP K NF A +
Sbjct: 517 AILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYV 576
Query: 637 --SSDPTIKD----KLMLTWKGSEREYRSTL------------------------GLVKS 666
+D K+ +L ++G E + L G +
Sbjct: 577 YIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMF 636
Query: 667 LELSNNNLNGAVPEEIMDLVGLVALNLSKNHLTGQISPKIGQLKSLDFLDLSRNQLVGGI 726
L++S N L+G +P+EI + L LNL N ++G I ++G L+ L+ LDLS N+L G I
Sbjct: 637 LDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRI 696
Query: 727 PSSLSQLSGLSVMDLSYNNLSGKIPTVTQLQSFNDTVYAGNPELCGLPLPNKCRDEESAA 786
P ++S L+ L+ +DLS NNLSG IP + Q ++F + NP LCG PLP +C D +A
Sbjct: 697 PQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLP-RC-DPSNAD 754
Query: 787 G 787
G
Sbjct: 755 G 755
Score = 97.8 bits (242), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 134/494 (27%), Positives = 203/494 (41%), Gaps = 58/494 (11%)
Query: 97 NDFSGSPIPEFI-GSLSKLRYLDLFGTVFAGPIPPQLGNLSRLQHLDLGSNYLFSTGNLD 155
N F+G IP+F+ G+ L LDL G F G +PP G+ S L+ L L SN +D
Sbjct: 279 NKFTGE-IPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMD 337
Query: 156 WLSHLSYLRYLNLDESNLANSSDWFQVIGXXXXXXXXXXXXCYLPPVIPXXXXXXXXXXX 215
L + L+ L+L + + + P++P
Sbjct: 338 TLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILP--NLCQNPKNT 395
Query: 216 XXXXVLSDNNLTSSIYPWLPNISSIFISIDLGFNQLQGSIPESFQHMVYLEHLRLSFNEL 275
L +N T I P L N S + +S+ L FN L G+IP S + L L+L N L
Sbjct: 396 LQELYLQNNGFTGKIPPTLSNCSEL-VSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNML 454
Query: 276 EGGIPKFFGNMCSLITLNLSNNKLSGQLSEIIQNLSSGCLENSLKSLYLENSLTGVISES 335
EG IP+ + +L TL L N L+G++ S
Sbjct: 455 EGEIPQELMYVKTLETLILDFNDLTGEI------------------------------PS 484
Query: 336 FFSNISNLKELHLANNPLVLKLSHDWVPPFQ-LIIISLSSCKIGPHFPKWLQTQNQIELL 394
SN +NL + L+NN L ++ W+ + L I+ LS+ + P L + L
Sbjct: 485 GLSNCTNLNWISLSNNRLTGEIPK-WIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWL 543
Query: 395 DISNTGISDTIPDWFWNLSNKFSFLDLASNQIKGKLPNLSSRFGTSNPGIDISSN----- 449
D++ + TIP + S K +A+N I GK N G+ +
Sbjct: 544 DLNTNLFNGTIPAAMFKQSGK-----IAANFIAGK-----RYVYIKNDGMKKECHGAGNL 593
Query: 450 -HFEGLIXXXXXXXXXX---XXXXXXXXGSISFLCSISGSKLTYVDLSSNLLSGKLPDCW 505
F+G+ G S +GS + ++D+S N+LSG +P
Sbjct: 594 LEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGS-MMFLDMSYNMLSGYIPKEI 652
Query: 506 WTFDSLVILNLENNSFSGRIPDSMGFLQNIQTLSLHNNRLTGELSSSFRNCSQLRLLDLG 565
+ L ILNL +N SG IPD +G L+ + L L +N+L G + + + L +DL
Sbjct: 653 GSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLS 712
Query: 566 KNALYGEIPTWMGE 579
N L G IP MG+
Sbjct: 713 NNNLSGPIPE-MGQ 725
Score = 96.3 bits (238), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 156/613 (25%), Positives = 251/613 (40%), Gaps = 125/613 (20%)
Query: 95 SFNDFSGSPIPEFIGSLSKLRYLDLFGTVFAGPIPPQLGNLSRLQHLDLGSNYLFSTGNL 154
S N+FS + IP F+G S L++LD+ G +G + + L+ L++ SN G +
Sbjct: 208 SSNNFS-TGIP-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQF--VGPI 263
Query: 155 DWLSHLSYLRYLNLDESNLANSSDWFQVIGXXXXXXXXXXXXCYLPPVIPXXXXXXXXXX 214
L L L+YL+L E+ IP
Sbjct: 264 PPLP-LKSLQYLSLAENKFTGE--------------------------IPDFLSGACDTL 296
Query: 215 XXXXXVLSDNNLTSSIYPWLPNISSIFISIDLGFNQLQGSIP-ESFQHMVYLEHLRLSFN 273
LS N+ ++ P+ S+ S+ L N G +P ++ M L+ L LSFN
Sbjct: 297 TGLD--LSGNHFYGAVPPFF-GSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFN 353
Query: 274 ELEGGIPKFFGNM-CSLITLNLSNNKLSGQ-LSEIIQNLSSGCLENSLKSLYLENS-LTG 330
E G +P+ N+ SL+TL+LS+N SG L + QN +N+L+ LYL+N+ TG
Sbjct: 354 EFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQN-----PKNTLQELYLQNNGFTG 408
Query: 331 VISESFFSNISNLKELHLANNPLVLKLSHDWVPPFQLIIISLSSCKIGPHFPKWLQTQNQ 390
I + SN S L LHL+ N L + +L + L + P+ L
Sbjct: 409 KIPPT-LSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKT 467
Query: 391 IELLDISNTGISDTIPDWFWNLSNKFSFLDLASNQIKGKLPNLSSRFGTSNPGI-DISSN 449
+E L + ++ IP N +N +++ L++N++ G++P R N I +S+N
Sbjct: 468 LETLILDFNDLTGEIPSGLSNCTN-LNWISLSNNRLTGEIPKWIGRL--ENLAILKLSNN 524
Query: 450 HFEGLIXXXXXXXXXXXXXXXXXXGSISFLCSISGSKLTYVDLSSNLLSGKLPDCWWTFD 509
F G I L ++DL++NL +G +P +
Sbjct: 525 SFSGNIPAELGDC----------------------RSLIWLDLNTNLFNGTIPAAMFKQS 562
Query: 510 SLVILN---------LENNSFSGRIPDSMGFLQNIQTLSLHNNRLT-------------G 547
+ N ++N+ + L+ S NRL+ G
Sbjct: 563 GKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGG 622
Query: 548 ELSSSFRNCSQLRLLDLGKNALYGEIPTWMGESLSNLIVLSLKSNKFHGKIPFQLCQLAF 607
S +F N + LD+ N L G IP +G S+ L +L+L N G IP ++ L
Sbjct: 623 HTSPTFDNNGSMMFLDMSYNMLSGYIPKEIG-SMPYLFILNLGHNDISGSIPDEVGDLRG 681
Query: 608 LQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKDKLMLTWKGSEREYRSTLGLVKSL 667
L +LDLS N + G+IP+ + T +T+ +
Sbjct: 682 LNILDLSSNKLDGRIPQAMSALTMLTE--------------------------------I 709
Query: 668 ELSNNNLNGAVPE 680
+LSNNNL+G +PE
Sbjct: 710 DLSNNNLSGPIPE 722
Score = 66.6 bits (161), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 86/309 (27%), Positives = 141/309 (45%), Gaps = 47/309 (15%)
Query: 510 SLVILNLENNSFSGRIPD--SMGFLQNIQTLSLHNNRLT--GELSSSFRNCSQLRLLDLG 565
SL L+L NS SG + S+G ++ L++ +N L G++S + + L +LDL
Sbjct: 101 SLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLK-LNSLEVLDLS 159
Query: 566 KNALYGE-IPTW-MGESLSNLIVLSLKSNKFHGKIPFQLCQLAFLQVLDLSLNNISGKIP 623
N++ G + W + + L L++ NK G + C L+ LD+S NN S IP
Sbjct: 160 ANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRC--VNLEFLDVSSNNFSTGIP 217
Query: 624 KCFNNFTAMTQERSSDPTIKDKLMLTWKGSEREYRSTLGLVKSLELSNNNLNGAVPEEIM 683
+ +A+ S +KL G ST +K L +S+N G +P +
Sbjct: 218 -FLGDCSALQHLDIS----GNKL----SGDFSRAISTCTELKLLNISSNQFVGPIPP--L 266
Query: 684 DLVGLVALNLSKNHLTGQISPKI-GQLKSLDFLDLSRNQLVGGIP--------------- 727
L L L+L++N TG+I + G +L LDLS N G +P
Sbjct: 267 PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALS 326
Query: 728 ----------SSLSQLSGLSVMDLSYNNLSGKIP-TVTQLQSFNDTVYAGNPELCGLPLP 776
+L ++ GL V+DLS+N SG++P ++T L + T+ + G LP
Sbjct: 327 SNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILP 386
Query: 777 NKCRDEESA 785
N C++ ++
Sbjct: 387 NLCQNPKNT 395
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 75/232 (32%), Positives = 107/232 (46%), Gaps = 24/232 (10%)
Query: 540 LHNNRLTGELSSSFRNCSQLRLLDLGKNALYGEIPTWMG-ESLSNLIVLSLKSNK--FHG 596
L N+ + G +S F+ + L LDL +N+L G + T S S L L++ SN F G
Sbjct: 84 LSNSHINGSVSG-FKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPG 142
Query: 597 KIPFQLCQLAFLQVLDLSLNNISGK-------IPKC--FNNFTAMTQERSSDPTIKDKLM 647
K+ L +L L+VLDLS N+ISG C + + S D + +
Sbjct: 143 KVSGGL-KLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVN 201
Query: 648 LTWKGSEREYRST----LG---LVKSLELSNNNLNGAVPEEIMDLVGLVALNLSKNHLTG 700
L + ST LG ++ L++S N L+G I L LN+S N G
Sbjct: 202 LEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVG 261
Query: 701 QISPKIGQLKSLDFLDLSRNQLVGGIPSSLS-QLSGLSVMDLSYNNLSGKIP 751
I P LKSL +L L+ N+ G IP LS L+ +DLS N+ G +P
Sbjct: 262 PIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVP 311
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 89/385 (23%), Positives = 151/385 (39%), Gaps = 54/385 (14%)
Query: 53 CSNKTNHVILLDLQPIDFDSFPLRGTISPAXXXXXXXXXXXXSFNDFSGSPIPEFIGSLS 112
C N N + L LQ F G I P SFN SG+ IP +GSLS
Sbjct: 389 CQNPKNTLQELYLQNNGF-----TGKIPPTLSNCSELVSLHLSFNYLSGT-IPSSLGSLS 442
Query: 113 KLRYLDLFGTVFAGPIPPQLGNLSRLQHLDLGSNYLFSTGNL-DWLSHLSYLRYLNLDES 171
KLR L L+ + G IP +L + L+ L L N L TG + LS+ + L +++L +
Sbjct: 443 KLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDL--TGEIPSGLSNCTNLNWISLSNN 500
Query: 172 NLANS-SDWFQVIGXXXXXXXXXXXXCYLPPVIPXXXXXXXXXXXXXXXVLSDNNLTSSI 230
L W + LS+N+ + +I
Sbjct: 501 RLTGEIPKWIGRL------------------------------ENLAILKLSNNSFSGNI 530
Query: 231 YPWLPNISSIFISIDLGFNQLQGSIPESFQHMVYLEHLRLSFNELEGGIPKFFGNMCSLI 290
L + S+ I +DL N G+IP + ++ + +++ N + G + N
Sbjct: 531 PAELGDCRSL-IWLDLNTNLFNGTIPAA----MFKQSGKIAANFIAGKRYVYIKNDGMKK 585
Query: 291 TLNLSNN--KLSGQLSEIIQNLSSGCLENSLKSLYLENSLTGVISESFFSNISNLKELHL 348
+ + N + G SE + LS+ N +Y G + F N ++ L +
Sbjct: 586 ECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVY------GGHTSPTFDNNGSMMFLDM 639
Query: 349 ANNPLVLKLSHDWVPPFQLIIISLSSCKIGPHFPKWLQTQNQIELLDISNTGISDTIPDW 408
+ N L + + L I++L I P + + +LD+S+ + IP
Sbjct: 640 SYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQA 699
Query: 409 FWNLSNKFSFLDLASNQIKGKLPNL 433
L+ + +DL++N + G +P +
Sbjct: 700 MSALT-MLTEIDLSNNNLSGPIPEM 723
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 42/145 (28%), Positives = 65/145 (44%), Gaps = 31/145 (21%)
Query: 652 GSEREYRSTLGLVKSLELSNNNLNGAVPE--EIMDLVGLVALNLSKNHLT--GQISPKIG 707
GS ++ + L SL+LS N+L+G V + GL LN+S N L G++S +
Sbjct: 91 GSVSGFKCSASLT-SLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGL- 148
Query: 708 QLKSLDFLDLSRNQLVGG----------------IPSSLSQLSG---------LSVMDLS 742
+L SL+ LDLS N + G + S +++SG L +D+S
Sbjct: 149 KLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVS 208
Query: 743 YNNLSGKIPTVTQLQSFNDTVYAGN 767
NN S IP + + +GN
Sbjct: 209 SNNFSTGIPFLGDCSALQHLDISGN 233
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 187 bits (474), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 194/601 (32%), Positives = 270/601 (44%), Gaps = 95/601 (15%)
Query: 249 NQLQGSIPESFQHMVYLEHLRLSFNELEGGIPKFFGNMCSLITLNLSNNKLSGQLSEIIQ 308
N++ G + S V LE L +S N GIP F G+ +L L++S NKLSG S I
Sbjct: 185 NKISGDVDVS--RCVNLEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKLSGDFSRAIS 241
Query: 309 NLSSGCLEN-------------SLKSL-YL---ENSLTGVISESFFSNISNLKELHLANN 351
+ L N LKSL YL EN TG I + L L L+ N
Sbjct: 242 TCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGN 301
Query: 352 PLVLKLSHDWVPPF-----QLIIISLSSCKIGPHFP-KWLQTQNQIELLDISNTGISDTI 405
+ VPPF L ++LSS P L +++LD+S S +
Sbjct: 302 HF-----YGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGEL 356
Query: 406 PDWFWNLSNKFSFLDLASNQIKGK-LPNLSSRFGTSNPGIDISSNHFEGLIXXXXXXXXX 464
P+ NLS LDL+SN G LPNL + + + +N F G I
Sbjct: 357 PESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNC-- 414
Query: 465 XXXXXXXXXGSISFLCSISGSKLTYVDLSSNLLSGKLPDCWWTFDSLVILNLENNSFSGR 524
S+L + LS N LSG +P + L L L N G
Sbjct: 415 --------------------SELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGE 454
Query: 525 IPDSMGFLQNIQTLSLHNNRLTGELSSSFRNCSQLRLLDLGKNALYGEIPTWMGESLSNL 584
IP + +++ ++TL L N LTGE+ S NC+ L + L N L GEIP W+G L NL
Sbjct: 455 IPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGR-LENL 513
Query: 585 IVLSLKSNKFHGKIPFQLCQLAFLQVLDLSLNNISGKIP--------KCFNNFTAMTQER 636
+L L +N F G IP +L L LDL+ N +G IP K NF A +
Sbjct: 514 AILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYV 573
Query: 637 --SSDPTIKD----KLMLTWKGSEREYRSTL------------------------GLVKS 666
+D K+ +L ++G E + L G +
Sbjct: 574 YIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMF 633
Query: 667 LELSNNNLNGAVPEEIMDLVGLVALNLSKNHLTGQISPKIGQLKSLDFLDLSRNQLVGGI 726
L++S N L+G +P+EI + L LNL N ++G I ++G L+ L+ LDLS N+L G I
Sbjct: 634 LDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRI 693
Query: 727 PSSLSQLSGLSVMDLSYNNLSGKIPTVTQLQSFNDTVYAGNPELCGLPLPNKCRDEESAA 786
P ++S L+ L+ +DLS NNLSG IP + Q ++F + NP LCG PLP +C D +A
Sbjct: 694 PQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLP-RC-DPSNAD 751
Query: 787 G 787
G
Sbjct: 752 G 752
Score = 97.8 bits (242), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 134/494 (27%), Positives = 203/494 (41%), Gaps = 58/494 (11%)
Query: 97 NDFSGSPIPEFI-GSLSKLRYLDLFGTVFAGPIPPQLGNLSRLQHLDLGSNYLFSTGNLD 155
N F+G IP+F+ G+ L LDL G F G +PP G+ S L+ L L SN +D
Sbjct: 276 NKFTGE-IPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMD 334
Query: 156 WLSHLSYLRYLNLDESNLANSSDWFQVIGXXXXXXXXXXXXCYLPPVIPXXXXXXXXXXX 215
L + L+ L+L + + + P++P
Sbjct: 335 TLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILP--NLCQNPKNT 392
Query: 216 XXXXVLSDNNLTSSIYPWLPNISSIFISIDLGFNQLQGSIPESFQHMVYLEHLRLSFNEL 275
L +N T I P L N S + +S+ L FN L G+IP S + L L+L N L
Sbjct: 393 LQELYLQNNGFTGKIPPTLSNCSEL-VSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNML 451
Query: 276 EGGIPKFFGNMCSLITLNLSNNKLSGQLSEIIQNLSSGCLENSLKSLYLENSLTGVISES 335
EG IP+ + +L TL L N L+G++ S
Sbjct: 452 EGEIPQELMYVKTLETLILDFNDLTGEI------------------------------PS 481
Query: 336 FFSNISNLKELHLANNPLVLKLSHDWVPPFQ-LIIISLSSCKIGPHFPKWLQTQNQIELL 394
SN +NL + L+NN L ++ W+ + L I+ LS+ + P L + L
Sbjct: 482 GLSNCTNLNWISLSNNRLTGEIPK-WIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWL 540
Query: 395 DISNTGISDTIPDWFWNLSNKFSFLDLASNQIKGKLPNLSSRFGTSNPGIDISSN----- 449
D++ + TIP + S K +A+N I GK N G+ +
Sbjct: 541 DLNTNLFNGTIPAAMFKQSGK-----IAANFIAGK-----RYVYIKNDGMKKECHGAGNL 590
Query: 450 -HFEGLIXXXXXXXXXX---XXXXXXXXGSISFLCSISGSKLTYVDLSSNLLSGKLPDCW 505
F+G+ G S +GS + ++D+S N+LSG +P
Sbjct: 591 LEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGS-MMFLDMSYNMLSGYIPKEI 649
Query: 506 WTFDSLVILNLENNSFSGRIPDSMGFLQNIQTLSLHNNRLTGELSSSFRNCSQLRLLDLG 565
+ L ILNL +N SG IPD +G L+ + L L +N+L G + + + L +DL
Sbjct: 650 GSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLS 709
Query: 566 KNALYGEIPTWMGE 579
N L G IP MG+
Sbjct: 710 NNNLSGPIPE-MGQ 722
Score = 96.3 bits (238), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 156/613 (25%), Positives = 251/613 (40%), Gaps = 125/613 (20%)
Query: 95 SFNDFSGSPIPEFIGSLSKLRYLDLFGTVFAGPIPPQLGNLSRLQHLDLGSNYLFSTGNL 154
S N+FS + IP F+G S L++LD+ G +G + + L+ L++ SN G +
Sbjct: 205 SSNNFS-TGIP-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQF--VGPI 260
Query: 155 DWLSHLSYLRYLNLDESNLANSSDWFQVIGXXXXXXXXXXXXCYLPPVIPXXXXXXXXXX 214
L L L+YL+L E+ IP
Sbjct: 261 PPLP-LKSLQYLSLAENKFTGE--------------------------IPDFLSGACDTL 293
Query: 215 XXXXXVLSDNNLTSSIYPWLPNISSIFISIDLGFNQLQGSIP-ESFQHMVYLEHLRLSFN 273
LS N+ ++ P+ S+ S+ L N G +P ++ M L+ L LSFN
Sbjct: 294 TGLD--LSGNHFYGAVPPFF-GSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFN 350
Query: 274 ELEGGIPKFFGNM-CSLITLNLSNNKLSGQ-LSEIIQNLSSGCLENSLKSLYLENS-LTG 330
E G +P+ N+ SL+TL+LS+N SG L + QN +N+L+ LYL+N+ TG
Sbjct: 351 EFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQN-----PKNTLQELYLQNNGFTG 405
Query: 331 VISESFFSNISNLKELHLANNPLVLKLSHDWVPPFQLIIISLSSCKIGPHFPKWLQTQNQ 390
I + SN S L LHL+ N L + +L + L + P+ L
Sbjct: 406 KIPPT-LSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKT 464
Query: 391 IELLDISNTGISDTIPDWFWNLSNKFSFLDLASNQIKGKLPNLSSRFGTSNPGI-DISSN 449
+E L + ++ IP N +N +++ L++N++ G++P R N I +S+N
Sbjct: 465 LETLILDFNDLTGEIPSGLSNCTN-LNWISLSNNRLTGEIPKWIGRL--ENLAILKLSNN 521
Query: 450 HFEGLIXXXXXXXXXXXXXXXXXXGSISFLCSISGSKLTYVDLSSNLLSGKLPDCWWTFD 509
F G I L ++DL++NL +G +P +
Sbjct: 522 SFSGNIPAELGDC----------------------RSLIWLDLNTNLFNGTIPAAMFKQS 559
Query: 510 SLVILN---------LENNSFSGRIPDSMGFLQNIQTLSLHNNRLT-------------G 547
+ N ++N+ + L+ S NRL+ G
Sbjct: 560 GKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGG 619
Query: 548 ELSSSFRNCSQLRLLDLGKNALYGEIPTWMGESLSNLIVLSLKSNKFHGKIPFQLCQLAF 607
S +F N + LD+ N L G IP +G S+ L +L+L N G IP ++ L
Sbjct: 620 HTSPTFDNNGSMMFLDMSYNMLSGYIPKEIG-SMPYLFILNLGHNDISGSIPDEVGDLRG 678
Query: 608 LQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKDKLMLTWKGSEREYRSTLGLVKSL 667
L +LDLS N + G+IP+ + T +T+ +
Sbjct: 679 LNILDLSSNKLDGRIPQAMSALTMLTE--------------------------------I 706
Query: 668 ELSNNNLNGAVPE 680
+LSNNNL+G +PE
Sbjct: 707 DLSNNNLSGPIPE 719
Score = 66.2 bits (160), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 86/309 (27%), Positives = 141/309 (45%), Gaps = 47/309 (15%)
Query: 510 SLVILNLENNSFSGRIPD--SMGFLQNIQTLSLHNNRLT--GELSSSFRNCSQLRLLDLG 565
SL L+L NS SG + S+G ++ L++ +N L G++S + + L +LDL
Sbjct: 98 SLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLK-LNSLEVLDLS 156
Query: 566 KNALYGE-IPTW-MGESLSNLIVLSLKSNKFHGKIPFQLCQLAFLQVLDLSLNNISGKIP 623
N++ G + W + + L L++ NK G + C L+ LD+S NN S IP
Sbjct: 157 ANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRC--VNLEFLDVSSNNFSTGIP 214
Query: 624 KCFNNFTAMTQERSSDPTIKDKLMLTWKGSEREYRSTLGLVKSLELSNNNLNGAVPEEIM 683
+ +A+ S +KL G ST +K L +S+N G +P +
Sbjct: 215 -FLGDCSALQHLDIS----GNKL----SGDFSRAISTCTELKLLNISSNQFVGPIPP--L 263
Query: 684 DLVGLVALNLSKNHLTGQISPKI-GQLKSLDFLDLSRNQLVGGIP--------------- 727
L L L+L++N TG+I + G +L LDLS N G +P
Sbjct: 264 PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALS 323
Query: 728 ----------SSLSQLSGLSVMDLSYNNLSGKIP-TVTQLQSFNDTVYAGNPELCGLPLP 776
+L ++ GL V+DLS+N SG++P ++T L + T+ + G LP
Sbjct: 324 SNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILP 383
Query: 777 NKCRDEESA 785
N C++ ++
Sbjct: 384 NLCQNPKNT 392
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 75/232 (32%), Positives = 107/232 (46%), Gaps = 24/232 (10%)
Query: 540 LHNNRLTGELSSSFRNCSQLRLLDLGKNALYGEIPTWMG-ESLSNLIVLSLKSNK--FHG 596
L N+ + G +S F+ + L LDL +N+L G + T S S L L++ SN F G
Sbjct: 81 LSNSHINGSVSG-FKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPG 139
Query: 597 KIPFQLCQLAFLQVLDLSLNNISGK-------IPKC--FNNFTAMTQERSSDPTIKDKLM 647
K+ L +L L+VLDLS N+ISG C + + S D + +
Sbjct: 140 KVSGGL-KLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVN 198
Query: 648 LTWKGSEREYRST----LG---LVKSLELSNNNLNGAVPEEIMDLVGLVALNLSKNHLTG 700
L + ST LG ++ L++S N L+G I L LN+S N G
Sbjct: 199 LEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVG 258
Query: 701 QISPKIGQLKSLDFLDLSRNQLVGGIPSSLS-QLSGLSVMDLSYNNLSGKIP 751
I P LKSL +L L+ N+ G IP LS L+ +DLS N+ G +P
Sbjct: 259 PIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVP 308
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 89/385 (23%), Positives = 151/385 (39%), Gaps = 54/385 (14%)
Query: 53 CSNKTNHVILLDLQPIDFDSFPLRGTISPAXXXXXXXXXXXXSFNDFSGSPIPEFIGSLS 112
C N N + L LQ F G I P SFN SG+ IP +GSLS
Sbjct: 386 CQNPKNTLQELYLQNNGF-----TGKIPPTLSNCSELVSLHLSFNYLSGT-IPSSLGSLS 439
Query: 113 KLRYLDLFGTVFAGPIPPQLGNLSRLQHLDLGSNYLFSTGNL-DWLSHLSYLRYLNLDES 171
KLR L L+ + G IP +L + L+ L L N L TG + LS+ + L +++L +
Sbjct: 440 KLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDL--TGEIPSGLSNCTNLNWISLSNN 497
Query: 172 NLANS-SDWFQVIGXXXXXXXXXXXXCYLPPVIPXXXXXXXXXXXXXXXVLSDNNLTSSI 230
L W + LS+N+ + +I
Sbjct: 498 RLTGEIPKWIGRL------------------------------ENLAILKLSNNSFSGNI 527
Query: 231 YPWLPNISSIFISIDLGFNQLQGSIPESFQHMVYLEHLRLSFNELEGGIPKFFGNMCSLI 290
L + S+ I +DL N G+IP + ++ + +++ N + G + N
Sbjct: 528 PAELGDCRSL-IWLDLNTNLFNGTIPAA----MFKQSGKIAANFIAGKRYVYIKNDGMKK 582
Query: 291 TLNLSNN--KLSGQLSEIIQNLSSGCLENSLKSLYLENSLTGVISESFFSNISNLKELHL 348
+ + N + G SE + LS+ N +Y G + F N ++ L +
Sbjct: 583 ECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVY------GGHTSPTFDNNGSMMFLDM 636
Query: 349 ANNPLVLKLSHDWVPPFQLIIISLSSCKIGPHFPKWLQTQNQIELLDISNTGISDTIPDW 408
+ N L + + L I++L I P + + +LD+S+ + IP
Sbjct: 637 SYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQA 696
Query: 409 FWNLSNKFSFLDLASNQIKGKLPNL 433
L+ + +DL++N + G +P +
Sbjct: 697 MSALT-MLTEIDLSNNNLSGPIPEM 720
Score = 30.8 bits (68), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 42/145 (28%), Positives = 65/145 (44%), Gaps = 31/145 (21%)
Query: 652 GSEREYRSTLGLVKSLELSNNNLNGAVPE--EIMDLVGLVALNLSKNHLT--GQISPKIG 707
GS ++ + L SL+LS N+L+G V + GL LN+S N L G++S +
Sbjct: 88 GSVSGFKCSASLT-SLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGL- 145
Query: 708 QLKSLDFLDLSRNQLVGG----------------IPSSLSQLSG---------LSVMDLS 742
+L SL+ LDLS N + G + S +++SG L +D+S
Sbjct: 146 KLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVS 205
Query: 743 YNNLSGKIPTVTQLQSFNDTVYAGN 767
NN S IP + + +GN
Sbjct: 206 SNNFSTGIPFLGDCSALQHLDISGN 230
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 90.9 bits (224), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 87/280 (31%), Positives = 126/280 (45%), Gaps = 52/280 (18%)
Query: 534 NIQTLSLHNNRLTG-------ELSSSFRNCSQLRLLDLGK-NALYGEIPTWMGESLSNLI 585
+ QT ++N L+G + SS N L L +G N L G IP + + L+ L
Sbjct: 46 DTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAK-LTQLH 104
Query: 586 VLSLKSNKFHGKIPFQLCQLAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKDK 645
L + G IP L Q+ L LD S N +SG +P SS P +
Sbjct: 105 YLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSI----------SSLPNL--- 151
Query: 646 LMLTWKGSE------REYRSTLGLVKSLELSNNNLNGAVPEEIMDLVGLVALNLSKNHLT 699
+ +T+ G+ Y S L S+ +S N L G +P +L L ++LS+N L
Sbjct: 152 VGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNMLE 210
Query: 700 GQIS-----------------------PKIGQLKSLDFLDLSRNQLVGGIPSSLSQLSGL 736
G S K+G K+L+ LDL N++ G +P L+QL L
Sbjct: 211 GDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFL 270
Query: 737 SVMDLSYNNLSGKIPTVTQLQSFNDTVYAGNPELCGLPLP 776
+++S+NNL G+IP LQ F+ + YA N LCG PLP
Sbjct: 271 HSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPLP 310
Score = 65.9 bits (159), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 68/236 (28%), Positives = 104/236 (44%), Gaps = 17/236 (7%)
Query: 495 NLLSGKLPDCWWTFDSLVILNLENNSFSGRIPDSMGFLQNIQTLSLHNNRLTGELSSSFR 554
N L G +P L L + + + SG IPD + ++ + TL N L+G L S
Sbjct: 87 NNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSIS 146
Query: 555 NCSQLRLLDLGKNALYGEIPTWMGESLSNLIVLSLKSNKFHGKIPFQLCQLAFLQVLDLS 614
+ L + N + G IP G +++ N+ GKIP L L +DLS
Sbjct: 147 SLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLS 205
Query: 615 LNNISGKIPKCFNNFTAMTQERSSDPTIKDKLMLTWKGSEREYRSTLGLVKS---LELSN 671
N + G F SD + K+ L K S +GL K+ L+L N
Sbjct: 206 RNMLEGDASVLF----------GSDKNTQ-KIHLA-KNSLAFDLGKVGLSKNLNGLDLRN 253
Query: 672 NNLNGAVPEEIMDLVGLVALNLSKNHLTGQISPKIGQLKSLDFLDLSRNQLVGGIP 727
N + G +P+ + L L +LN+S N+L G+I P+ G L+ D + N+ + G P
Sbjct: 254 NRIYGTLPQGLTQLKFLHSLNVSFNNLCGEI-PQGGNLQRFDVSAYANNKCLCGSP 308
Score = 63.5 bits (153), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 51/187 (27%), Positives = 86/187 (45%), Gaps = 48/187 (25%)
Query: 485 SKLTYVDLSSNLLSGKLPDCWWTFDSLVILNLENNSFSGRIPDSMGFLQNI--------- 535
++L Y+ ++ +SG +PD +LV L+ N+ SG +P S+ L N+
Sbjct: 101 TQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNR 160
Query: 536 ----------------QTLSLHNNRLTGELSSSFRNCSQLRLLDLGKNALYGEIPTWMGE 579
++++ NRLTG++ +F N + L +DL +N L G+ G
Sbjct: 161 ISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGS 219
Query: 580 ------------SLS----------NLIVLSLKSNKFHGKIPFQLCQLAFLQVLDLSLNN 617
SL+ NL L L++N+ +G +P L QL FL L++S NN
Sbjct: 220 DKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNN 279
Query: 618 ISGKIPK 624
+ G+IP+
Sbjct: 280 LCGEIPQ 286
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 72/299 (24%), Positives = 118/299 (39%), Gaps = 64/299 (21%)
Query: 11 CIDEEREALLTFKASLVDESGVLSSWGPEDEKRDCCK--WTGLRCSNKTNHVILLDLQPI 68
C ++++ALL K L + + LSSW P DCC W G+ C D Q
Sbjct: 3 CNPQDKQALLQIKKDLGNPT-TLSSWLPT---TDCCNRTWLGVLCDT--------DTQTY 50
Query: 69 DFDSFPLRGTISPAXXXXXXXXXXXXSFNDFSGSPIPEFIGSLSKLRYLDLFG-TVFAGP 127
++ L G P PIP + +L L +L + G GP
Sbjct: 51 RVNNLDLSGLNLPKPY------------------PIPSSLANLPYLNFLYIGGINNLVGP 92
Query: 128 IPPQLGNLSRLQHLDLGSNYLFSTGNLDWLSHLSYLRYLNLDESNLANSSDWFQVIGXXX 187
IPP + L++L +L + ++ S D+LS + L L+ + L+ +
Sbjct: 93 IPPAIAKLTQLHYLYI-THTNVSGAIPDFLSQIKTLVTLDFSYNALSGT----------- 140
Query: 188 XXXXXXXXXCYLPPVIPXXXXXXXXXXXXXXXVLSDNNLTSSIYPWLPNISSIFISIDLG 247
LPP I N ++ +I + S +F S+ +
Sbjct: 141 -----------LPPSI-------SSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTIS 182
Query: 248 FNQLQGSIPESFQHMVYLEHLRLSFNELEGGIPKFFGNMCSLITLNLSNNKLSGQLSEI 306
N+L G IP +F ++ L + LS N LEG FG+ + ++L+ N L+ L ++
Sbjct: 183 RNRLTGKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKV 240
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 50/202 (24%), Positives = 88/202 (43%), Gaps = 19/202 (9%)
Query: 234 LPNISSIFISIDLGFNQLQGSIPESFQHMVYLEHLRLSFNELEGGIPKFFGNMCSLITLN 293
LP ++ ++I G N L G IP + + L +L ++ + G IP F + +L+TL+
Sbjct: 75 LPYLNFLYIG---GINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLD 131
Query: 294 LSNNKLSGQLSEIIQNLSSGCLENSLKSLYLENSLTGVISESFFSNISNLKELHLANNPL 353
S N LSG L I + L N + + N ++G I +S+ S + ++ N L
Sbjct: 132 FSYNALSGTLPPSISS-----LPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRL 186
Query: 354 VLKLSHDWVPP----FQLIIISLSSCKIGPHFPKWLQTQNQIELLDISNTGISDTIPDWF 409
K +PP L + LS + + + + ++ ++ +
Sbjct: 187 TGK-----IPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-- 239
Query: 410 WNLSNKFSFLDLASNQIKGKLP 431
LS + LDL +N+I G LP
Sbjct: 240 VGLSKNLNGLDLRNNRIYGTLP 261
Score = 34.7 bits (78), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 244 IDLGFNQLQGSIPESFQHMVYLEHLRLSFNELEGGIPKFFGNMCSLITLNLSNNK 298
+DL N++ G++P+ + +L L +SFN L G IP+ GN+ +NNK
Sbjct: 249 LDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYANNK 302
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 75.9 bits (185), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 161/641 (25%), Positives = 266/641 (41%), Gaps = 114/641 (17%)
Query: 234 LPNISSIFISIDLGFNQLQGSIPESFQHMVYLEHLRLSFNELEGGIPK--FFGNMCSLIT 291
LPN+ + DLG +++ P++FQ + +L LRL F L + K +F N+ +L
Sbjct: 72 LPNLRIL----DLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTR 127
Query: 292 LNLSNNKLSGQLSEIIQNLSSGCLENSLKSLYLENSLTGVISESFFSNI--SNLKELHLA 349
L+LS N Q+ + + S G L NSLKS+ ++ ++ E + L LA
Sbjct: 128 LDLSKN----QIRSLYLHPSFGKL-NSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLA 182
Query: 350 NNPLVLKLSHDW---VPPFQLIIISLSSCKIGPHFPKWLQTQNQIELLDISNTGISDTIP 406
N L ++S DW + PF+ +++ E+LD+S G + I
Sbjct: 183 ANSLYSRVSVDWGKCMNPFRNMVL---------------------EILDVSGNGWTVDIT 221
Query: 407 DWFWN-LSNKFSFLDLASNQIKGKLPNLSSRFGTSNPGIDISSNHFEGLIXXXXXXXXXX 465
F N +S +F + ++ I G + FG N D N F GL
Sbjct: 222 GNFSNAISKSQAFSLILAHHIMG------AGFGFHNIK-DPDQNTFAGLARSSVRHLDL- 273
Query: 466 XXXXXXXXGSISFLCSISG------SKLTYVDLSSNLLSGKLPDCWWTFDSLVILNLENN 519
S F+ S++ L ++L+ N ++ + ++ D+L +LNL N
Sbjct: 274 ---------SHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYN 324
Query: 520 SFSGRIPDSMGFLQNIQTLSLHNNRLTGELSSSFRNCSQLRLLDLGKNALYG-----EIP 574
+ L + + L N + +F+ +L+ LDL NAL IP
Sbjct: 325 LLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIP 384
Query: 575 TWM--GESLSNLIVLSLKSNKFHGK--------IPFQLCQLAFLQVLDLSLNNISGKIPK 624
G L L ++L +N H I + L ++ LQ+L L+ N S
Sbjct: 385 DIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSS---- 440
Query: 625 CFNNFTAMTQERSSDPTI------KDKLMLTWKGSEREYRSTLGL--VKSLELSNNNLNG 676
+ Q S +P++ ++ L L W+ +E + GL ++ L L++N LN
Sbjct: 441 -----CSGDQTPSENPSLEQLFLGENMLQLAWE-TELCWDVFEGLSHLQVLYLNHNYLNS 494
Query: 677 AVPEEIMDLVGLVALNLSKNHLTGQISPKIGQLKSLDFLDLSRNQLVGGIPSSLSQLSGL 736
P L L L+L+ N LT + +L+ LD+SRNQL+ P L
Sbjct: 495 LPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDV---FVSL 549
Query: 737 SVMDLSYNNLSGKIPTVTQLQSFNDTVYAGNPELCGLPLPNKCRDEESAAGPGI----TE 792
SV+D+++N K +L +F + + N + G P C +S +G + TE
Sbjct: 550 SVLDITHN----KFICECELSTFINWLNHTNVTIAGPPADIYCVYPDSFSGVSLFSLSTE 605
Query: 793 GRDDADT--SEDEDQFI----TLGFYVSLILGFIVGFWGVC 827
G D+ + S FI TL ++ IL + F G C
Sbjct: 606 GCDEEEVLKSLKFSLFIVCTVTLTLFLMTILT-VTKFRGFC 645
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 49.7 bits (117), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 43/138 (31%), Positives = 67/138 (48%), Gaps = 17/138 (12%)
Query: 221 LSDNNLT---SSIYPWLPNISSIFISIDLGFNQLQGSIPESFQHMVYLEHLRLSFNELEG 277
L+DN L + I+ L N+ +++++ N+LQ F +V L LRL N+L+
Sbjct: 68 LNDNKLQTLPAGIFKELKNLETLWVTD----NKLQALPIGVFDQLVNLAELRLDRNQLKS 123
Query: 278 GIPKFFGNMCSLITLNLSNNKLSGQLSEIIQNLSSGCLEN--SLKSLYLENSLTGVISES 335
P+ F ++ L L+L N+L Q+L G + SLK L L N+ + E
Sbjct: 124 LPPRVFDSLTKLTYLSLGYNEL--------QSLPKGVFDKLTSLKELRLYNNQLKRVPEG 175
Query: 336 FFSNISNLKELHLANNPL 353
F ++ LK L L NN L
Sbjct: 176 AFDKLTELKTLKLDNNQL 193
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 61/135 (45%), Gaps = 13/135 (9%)
Query: 221 LSDNNLTS---SIYPWLPNISSIFISIDLGFNQLQGSIPESFQHMVYLEHLRLSFNELEG 277
++DN L + ++ L N++ + L NQL+ P F + L +L L +NEL+
Sbjct: 92 VTDNKLQALPIGVFDQLVNLAELR----LDRNQLKSLPPRVFDSLTKLTYLSLGYNELQS 147
Query: 278 GIPKFFGNMCSLITLNLSNNKLSGQLSEIIQNLSSGCLENSLKSLYLENSLTGVISESFF 337
F + SL L L NN+L L+ LK+L L+N+ + E F
Sbjct: 148 LPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTE------LKTLKLDNNQLKRVPEGAF 201
Query: 338 SNISNLKELHLANNP 352
++ LK L L NP
Sbjct: 202 DSLEKLKMLQLQENP 216
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 57/195 (29%), Positives = 77/195 (39%), Gaps = 25/195 (12%)
Query: 534 NIQTLSLHNNRLTGELSSSFRNCSQLRLLDLGKNALYGEIPTWMGESLSNLIVLSLKSNK 593
+ + L L +N+L+ S +F ++LRLL L N L +P + + L NL L + NK
Sbjct: 38 DTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNK 96
Query: 594 FHGKIPFQLCQLAFLQVLDLSLNNISGKIPKCFNNFTAMT------QERSSDPT-IKDKL 646
QL L L L N + P+ F++ T +T E S P + DKL
Sbjct: 97 LQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKL 156
Query: 647 MLTWKGSEREYRSTLGLVKSLELSNNNLNGAVPEEIMD-LVGLVALNLSKNHLTGQISPK 705
+K L L NN L VPE D L L L L N L
Sbjct: 157 T---------------SLKELRLYNNQLK-RVPEGAFDKLTELKTLKLDNNQLKRVPEGA 200
Query: 706 IGQLKSLDFLDLSRN 720
L+ L L L N
Sbjct: 201 FDSLEKLKMLQLQEN 215
Score = 34.3 bits (77), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 42/84 (50%), Gaps = 2/84 (2%)
Query: 485 SKLTYVDLSSNLLSGKLPDCWWTFDSLVILNLENNSFSGRIPD-SMGFLQNIQTLSLHNN 543
+KLTY+ L N L + SL L L NN R+P+ + L ++TL L NN
Sbjct: 133 TKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLK-RVPEGAFDKLTELKTLKLDNN 191
Query: 544 RLTGELSSSFRNCSQLRLLDLGKN 567
+L +F + +L++L L +N
Sbjct: 192 QLKRVPEGAFDSLEKLKMLQLQEN 215
Score = 33.1 bits (74), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 67/137 (48%), Gaps = 20/137 (14%)
Query: 236 NISSIFISIDLGFNQLQGSIPESFQHMVYLEHLRLSFNELEGGIPKFFGNMCSLITLNLS 295
NI + +DL N+L ++F + L L L+ N+L+ F + +L TL ++
Sbjct: 34 NIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVT 93
Query: 296 NNKLS----GQLSEIIQNLSSGCLE-NSLKSL--YLENSLTGV------------ISESF 336
+NKL G +++ NL+ L+ N LKSL + +SLT + + +
Sbjct: 94 DNKLQALPIGVFDQLV-NLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGV 152
Query: 337 FSNISNLKELHLANNPL 353
F +++LKEL L NN L
Sbjct: 153 FDKLTSLKELRLYNNQL 169
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 45/106 (42%), Gaps = 1/106 (0%)
Query: 487 LTYVDLSSNLLSGKLPDCWWTFDSLVILNLENNSFSGRIPDSMGFLQNIQTLSLHNNRLT 546
L + L N L P + + L L+L N L +++ L L+NN+L
Sbjct: 111 LAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLK 170
Query: 547 GELSSSFRNCSQLRLLDLGKNALYGEIPTWMGESLSNLIVLSLKSN 592
+F ++L+ L L N L +P +SL L +L L+ N
Sbjct: 171 RVPEGAFDKLTELKTLKLDNNQLK-RVPEGAFDSLEKLKMLQLQEN 215
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 46.2 bits (108), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 133/542 (24%), Positives = 218/542 (40%), Gaps = 102/542 (18%)
Query: 225 NLTSSIYPWLPNISSIFISIDLGFNQLQGSIPESFQHMVYLEHLRLSFNELEGGIPKFFG 284
N S + P L I + ++L N+L ++F L L L N + F
Sbjct: 59 NSISKLEPELCQILPLLKVLNLQHNELSQISDQTFVFCTNLTELDLMSNSIHKIKSNPFK 118
Query: 285 NMCSLITLNLSNNKLSGQLSEIIQNLSSGCLENSLKSLYL-ENSLTGVISESF-FSNISN 342
N +LI L+LS+N LS L +G +L+ L L +N + + SE F S+
Sbjct: 119 NQKNLIKLDLSHNGLSST------KLGTGVQLENLQELLLAKNKILALRSEELEFLGNSS 172
Query: 343 LKELHLANNPLVLKLSHDWVPPFQLIIISLSSCKIGPHFPKWLQTQNQIELLDISNTGIS 402
L++L L++NPL + +L + L++ ++ PH + L ++SNT I
Sbjct: 173 LRKLDLSSNPLKEFSPGCFQTIGKLFALLLNNAQLNPHLTEKL-------CWELSNTSIQ 225
Query: 403 DTIPDWFWNLSNKFSFLDLASNQIKGKLPNLSSRFGTSN-PGIDISSNHFEGLIXXXXXX 461
+ L LA+NQ+ + S +N +D+S N+ +
Sbjct: 226 N---------------LSLANNQLLATSESTFSGLKWTNLTQLDLSYNNLHDV------- 263
Query: 462 XXXXXXXXXXXXGSISFLCSISGSKLTYVDLSSNLLSGKLPDCWWTFDSLVILNLENNSF 521
GS S+L S L Y+ L N + P ++ +L L+L+ +F
Sbjct: 264 ----------GNGSFSYLPS-----LRYLSLEYNNIQRLSPRSFYGLSNLRYLSLKR-AF 307
Query: 522 SGR---------IPD-SMGFLQNIQTLSLHNNRLTGELSSSFRNCSQLRLLDLGKNALYG 571
+ + I D S +L+ ++ L++ +N + S++F L+ L L K +
Sbjct: 308 TKQSVSLASHPNIDDFSFQWLKYLEYLNMDDNNIPSTKSNTFTGLVSLKYLSLSKT--FT 365
Query: 572 EIPTWMGESL-----SNLIVLSLKSNKFHGKIPFQLCQLAFLQVLDLSLNNISGKIPKCF 626
+ T E+ S L+ L+L N L L++LDL LN I K+
Sbjct: 366 SLQTLTNETFVSLAHSPLLTLNLTKNHISKIANGTFSWLGQLRILDLGLNEIEQKLSG-- 423
Query: 627 NNFTAMTQERSSDPTIKDKLMLTWKGSEREYRSTLGLVKSLELSNNNLNGAVPEEIMDLV 686
QE W+G + L K L+LS ++ VP ++
Sbjct: 424 -------QE--------------WRGLRNIFEIYLSYNKYLQLSTSSF-ALVPSLQRLML 461
Query: 687 GLVALNLSKNHLTGQISPK-IGQLKSLDFLDLSRNQLVGGIPSSLSQLSGLSVMDLSYNN 745
VAL KN ISP L++L LDLS N + L L L ++D +NN
Sbjct: 462 RRVAL---KN---VDISPSPFRPLRNLTILDLSNNNIANINEDLLEGLENLEILDFQHNN 515
Query: 746 LS 747
L+
Sbjct: 516 LA 517
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 71/268 (26%), Positives = 108/268 (40%), Gaps = 24/268 (8%)
Query: 485 SKLTYVDLSSNLLSGKLPDCWWTFDSLVILNLENNSFSGRIPDSMGFLQNIQTLSLHNNR 544
S+L +D N +S P+ L +LNL++N S + F N+ L L +N
Sbjct: 49 SQLAILDAGFNSISKLEPELCQILPLLKVLNLQHNELSQISDQTFVFCTNLTELDLMSNS 108
Query: 545 LTGELSSSFRNCSQLRLLDLGKNALYGEIPTWMGESLSNLIVLSLKSNKFHGKIPFQLCQ 604
+ S+ F+N L LDL N L T +G + + L K + + + +
Sbjct: 109 IHKIKSNPFKNQKNLIKLDLSHNGLSS---TKLGTGVQLENLQELLLAK-NKILALRSEE 164
Query: 605 LAF-----LQVLDLSLNNISGKIPKCFNN----FTAMTQERSSDPTIKDKLMLTWKGSER 655
L F L+ LDLS N + P CF F + +P + +K L W+ S
Sbjct: 165 LEFLGNSSLRKLDLSSNPLKEFSPGCFQTIGKLFALLLNNAQLNPHLTEK--LCWELSNT 222
Query: 656 EYRSTLGLVKSLELSNNNLNGAVPEEIMDL--VGLVALNLSKNHLTGQISPKIGQLKSLD 713
+++L L+NN L L L L+LS N+L + L SL
Sbjct: 223 S-------IQNLSLANNQLLATSESTFSGLKWTNLTQLDLSYNNLHDVGNGSFSYLPSLR 275
Query: 714 FLDLSRNQLVGGIPSSLSQLSGLSVMDL 741
+L L N + P S LS L + L
Sbjct: 276 YLSLEYNNIQRLSPRSFYGLSNLRYLSL 303
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 75/297 (25%), Positives = 115/297 (38%), Gaps = 62/297 (20%)
Query: 485 SKLTYVDLSSNLLSGKLPDCWWTFDSLVILNLENNSFSGRIPDSMGFLQNIQTLSLHNNR 544
S +T ++L+ N L P + + L IL+ NS S P+ L ++ L+L +N
Sbjct: 25 SNITVLNLTHNQLRRLPPTNFTRYSQLAILDAGFNSISKLEPELCQILPLLKVLNLQHNE 84
Query: 545 LTGELSSSFRNCSQLRLLDLGKNALYGEIPTWMGESLSNLIVLSLKSNKFHGK------- 597
L+ +F C+ L LDL N+++ +I + ++ NLI L L N
Sbjct: 85 LSQISDQTFVFCTNLTELDLMSNSIH-KIKSNPFKNQKNLIKLDLSHNGLSSTKLGTGVQ 143
Query: 598 --------------IPFQLCQLAFL-----QVLDLSLNNISGKIPKCFNN----FTAMTQ 634
+ + +L FL + LDLS N + P CF F +
Sbjct: 144 LENLQELLLAKNKILALRSEELEFLGNSSLRKLDLSSNPLKEFSPGCFQTIGKLFALLLN 203
Query: 635 ERSSDPTIKDKLMLTWKGSEREYRSTLGLVKSLELSNNNLNGAVPEEIMDLVGLVALNLS 694
+P + +KL W+ S +++L L+NN L A E GL NL+
Sbjct: 204 NAQLNPHLTEKL--CWELSNTS-------IQNLSLANNQL-LATSESTFS--GLKWTNLT 251
Query: 695 KNHLTGQISPKIGQLKSLDFLDLSRNQLVGGIPSSLSQLSGLSVMDLSYNNLSGKIP 751
+ LDLS N L S S L L + L YNN+ P
Sbjct: 252 Q-------------------LDLSYNNLHDVGNGSFSYLPSLRYLSLEYNNIQRLSP 289
Score = 38.5 bits (88), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 70/249 (28%), Positives = 108/249 (43%), Gaps = 32/249 (12%)
Query: 524 RIPDSMGFLQNIQTLSLHNNRLTGELSSSFRNCSQLRLLDLGKNALYGEIPTWMGESLSN 583
IPD + NI L+L +N+L ++F SQL +LD G N++ ++ + + L
Sbjct: 18 HIPDDLP--SNITVLNLTHNQLRRLPPTNFTRYSQLAILDAGFNSI-SKLEPELCQILPL 74
Query: 584 LIVLSLKSNKFH--GKIPFQLCQLAFLQVLDLSLNNISGKIPKCFNNFTAMTQ-ERSSDP 640
L VL+L+ N+ F C L LDL N+I F N + + + S +
Sbjct: 75 LKVLNLQHNELSQISDQTFVFC--TNLTELDLMSNSIHKIKSNPFKNQKNLIKLDLSHNG 132
Query: 641 TIKDKL------------------MLTWKGSEREYRSTLGLVKSLELSNNNLNGAVPEEI 682
KL +L + E E+ L K L+LS+N L P
Sbjct: 133 LSSTKLGTGVQLENLQELLLAKNKILALRSEELEFLGNSSLRK-LDLSSNPLKEFSPGCF 191
Query: 683 MDLVGLVALNLSKNHLTGQISPKIG---QLKSLDFLDLSRNQLVGGIPSSLSQL--SGLS 737
+ L AL L+ L ++ K+ S+ L L+ NQL+ S+ S L + L+
Sbjct: 192 QTIGKLFALLLNNAQLNPHLTEKLCWELSNTSIQNLSLANNQLLATSESTFSGLKWTNLT 251
Query: 738 VMDLSYNNL 746
+DLSYNNL
Sbjct: 252 QLDLSYNNL 260
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 82/321 (25%), Positives = 130/321 (40%), Gaps = 62/321 (19%)
Query: 479 LCSISGSK---LTYVDLSSNLLSGKL-PDCWWTFDSLVILNLENNSFSGRIPDSMGF--L 532
LC IS + LT++ + N+ L C +L L+L +N S+ L
Sbjct: 313 LCQISAANFPSLTHLYIRGNVKKLHLGVGCLEKLGNLQTLDLSHNDIEASDCCSLQLKNL 372
Query: 533 QNIQTLSLHNNRLTGELSSSFRNCSQLRLLDLGKNALYGEIPTWMGESLSNLIVLSLKSN 592
++QTL+L +N G S +F+ C QL LLDL L+ P
Sbjct: 373 SHLQTLNLSHNEPLGLQSQAFKECPQLELLDLAFTRLHINAP------------------ 414
Query: 593 KFHGKIPFQLCQLAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKDKLMLTWKG 652
+ PFQ L FLQVL+L+ CF + T+ + P ++ L KG
Sbjct: 415 ----QSPFQ--NLHFLQVLNLTY---------CFLD-TSNQHLLAGLPVLRH---LNLKG 455
Query: 653 --------SEREYRSTLGLVKSLELSNNNLNGAVPEEIMDLVGLVALNLSKNHLTGQISP 704
++ T+G ++ L LS+ L + L + ++LS N LT
Sbjct: 456 NHFQDGTITKTNLLQTVGSLEVLILSSCGLLSIDQQAFHSLGKMSHVDLSHNSLTCDSID 515
Query: 705 KIGQLKSLDFLDLSRNQLVGGIPSSLSQLSGLSVMDLSYNNLSGKIPTV----------T 754
+ LK + +L+L+ N + P L LS S ++LS+N L +
Sbjct: 516 SLSHLKGI-YLNLAANSINIISPRLLPILSQQSTINLSHNPLDCTCSNIHFLTWYKENLH 574
Query: 755 QLQSFNDTVYAGNPELCGLPL 775
+L+ +T A P L G+ L
Sbjct: 575 KLEGSEETTCANPPSLRGVKL 595
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 58/212 (27%), Positives = 96/212 (45%), Gaps = 36/212 (16%)
Query: 535 IQTLSLHNNRLTGELSSSFRNCSQLRLLDLGKNALYGEIPTWMGESLSNLIVLSLKSNKF 594
+++L+L +R + S++F+ +QL+ LDL L G +P+ M + L+ L L L N F
Sbjct: 253 VESLNLQEHRFSDISSTTFQCFTQLQELDLTATHLKG-LPSGM-KGLNLLKKLVLSVNHF 310
Query: 595 HGKIPFQLCQLAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKDKLMLTWKGSE 654
QLCQ++ L+ I G + KL L E
Sbjct: 311 D-----QLCQISAANFPSLTHLYIRGNV---------------------KKLHLGVGCLE 344
Query: 655 REYRSTLGLVKSLELSNNNLNGA--VPEEIMDLVGLVALNLSKNHLTGQISPKIGQLKSL 712
+ LG +++L+LS+N++ + ++ +L L LNLS N G S + L
Sbjct: 345 K-----LGNLQTLDLSHNDIEASDCCSLQLKNLSHLQTLNLSHNEPLGLQSQAFKECPQL 399
Query: 713 DFLDLSRNQLVGGIPSS-LSQLSGLSVMDLSY 743
+ LDL+ +L P S L L V++L+Y
Sbjct: 400 ELLDLAFTRLHINAPQSPFQNLHFLQVLNLTY 431
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 64/251 (25%), Positives = 93/251 (37%), Gaps = 40/251 (15%)
Query: 536 QTLSLHNNRLTGELSSSFRNCSQLRLLDLGKNALYGEIPTWMGESLSNLIVLSLKSN-KF 594
Q + LH NR++ ++SFR C L +L L N L I L+ L L L N +
Sbjct: 34 QRIFLHGNRISHVPAASFRACRNLTILWLHSNVL-ARIDAAAFTGLALLEQLDLSDNAQL 92
Query: 595 HGKIPFQLCQLAFLQVLDLSLNNISGKIPKCFNNFTAMTQ--------ERSSDPTIKDKL 646
P L L L L + P F A+ + D T +D
Sbjct: 93 RSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLG 152
Query: 647 MLTW---------KGSEREYRSTLGLVKSLELSNNNLNGAVPEEIMDLVGLVALNLSKNH 697
LT ER +R L + L L N + P DL L+ L L N+
Sbjct: 153 NLTHLFLHGNRISSVPERAFRGLHSLDRLL-LHQNRVAHVHPHAFRDLGRLMTLYLFANN 211
Query: 698 LTGQISPKIGQLKSLDFLDLSRNQLV-------------------GGIPSSLSQ-LSGLS 737
L+ + + L++L +L L+ N V +P SL Q L+G
Sbjct: 212 LSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFRGSSSEVPCSLPQRLAGRD 271
Query: 738 VMDLSYNNLSG 748
+ L+ N+L G
Sbjct: 272 LKRLAANDLQG 282
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 44/110 (40%), Gaps = 1/110 (0%)
Query: 485 SKLTYVDLSSNLLSGKLPDCWWTFDSLVILNLENNSFSGRIPDSMGFLQNIQTLSLHNNR 544
+ L Y+ L N L D + +L L L N S + L ++ L LH NR
Sbjct: 128 AALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNR 187
Query: 545 LTGELSSSFRNCSQLRLLDLGKNALYGEIPTWMGESLSNLIVLSLKSNKF 594
+ +FR+ +L L L N L +PT L L L L N +
Sbjct: 188 VAHVHPHAFRDLGRLMTLYLFANNL-SALPTEALAPLRALQYLRLNDNPW 236
Score = 31.2 bits (69), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 47/115 (40%), Gaps = 1/115 (0%)
Query: 502 PDCWWTFDSLVILNLENNSFSGRIPDSMGFLQNIQTLSLHNNRLTGELSSSFRNCSQLRL 561
P + +L L L++N+ D+ L N+ L LH NR++ +FR L
Sbjct: 121 PGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDR 180
Query: 562 LDLGKNALYGEIPTWMGESLSNLIVLSLKSNKFHGKIPFQLCQLAFLQVLDLSLN 616
L L +N + P L L+ L L +N L L LQ L L+ N
Sbjct: 181 LLLHQNRVAHVHPHAF-RDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 234
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 64/251 (25%), Positives = 93/251 (37%), Gaps = 40/251 (15%)
Query: 536 QTLSLHNNRLTGELSSSFRNCSQLRLLDLGKNALYGEIPTWMGESLSNLIVLSLKSN-KF 594
Q + LH NR++ ++SFR C L +L L N L I L+ L L L N +
Sbjct: 35 QRIFLHGNRISHVPAASFRACRNLTILWLHSNVL-ARIDAAAFTGLALLEQLDLSDNAQL 93
Query: 595 HGKIPFQLCQLAFLQVLDLSLNNISGKIPKCFNNFTAMTQ--------ERSSDPTIKDKL 646
P L L L L + P F A+ + D T +D
Sbjct: 94 RSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLG 153
Query: 647 MLTW---------KGSEREYRSTLGLVKSLELSNNNLNGAVPEEIMDLVGLVALNLSKNH 697
LT ER +R L + L L N + P DL L+ L L N+
Sbjct: 154 NLTHLFLHGNRISSVPERAFRGLHSLDRLL-LHQNRVAHVHPHAFRDLGRLMTLYLFANN 212
Query: 698 LTGQISPKIGQLKSLDFLDLSRNQLV-------------------GGIPSSLSQ-LSGLS 737
L+ + + L++L +L L+ N V +P SL Q L+G
Sbjct: 213 LSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFRGSSSEVPCSLPQRLAGRD 272
Query: 738 VMDLSYNNLSG 748
+ L+ N+L G
Sbjct: 273 LKRLAANDLQG 283
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 44/110 (40%), Gaps = 1/110 (0%)
Query: 485 SKLTYVDLSSNLLSGKLPDCWWTFDSLVILNLENNSFSGRIPDSMGFLQNIQTLSLHNNR 544
+ L Y+ L N L D + +L L L N S + L ++ L LH NR
Sbjct: 129 AALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNR 188
Query: 545 LTGELSSSFRNCSQLRLLDLGKNALYGEIPTWMGESLSNLIVLSLKSNKF 594
+ +FR+ +L L L N L +PT L L L L N +
Sbjct: 189 VAHVHPHAFRDLGRLMTLYLFANNL-SALPTEALAPLRALQYLRLNDNPW 237
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 47/115 (40%), Gaps = 1/115 (0%)
Query: 502 PDCWWTFDSLVILNLENNSFSGRIPDSMGFLQNIQTLSLHNNRLTGELSSSFRNCSQLRL 561
P + +L L L++N+ D+ L N+ L LH NR++ +FR L
Sbjct: 122 PGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDR 181
Query: 562 LDLGKNALYGEIPTWMGESLSNLIVLSLKSNKFHGKIPFQLCQLAFLQVLDLSLN 616
L L +N + P L L+ L L +N L L LQ L L+ N
Sbjct: 182 LLLHQNRVAHVHPHAF-RDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 235
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 65/254 (25%), Positives = 103/254 (40%), Gaps = 40/254 (15%)
Query: 532 LQNIQTLSLHNNRLTGELSSSFRNCSQLRLLDLGKNALYGEIPTWMGESLSNLIVLSLKS 591
L+++Q L+L N G +F+ C QL LLD+ L+ + P ++L L VL+L
Sbjct: 374 LRHLQYLNLSYNEPLGLEDQAFKECPQLELLDVAFTHLHVKAPHSPFQNLHLLRVLNLSH 433
Query: 592 NKFHGKIPFQLCQLAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKDKLMLTWK 651
L L L+ L+L N+ D +I +L
Sbjct: 434 CLLDTSNQHLLAGLQDLRHLNLQGNSF-------------------QDGSISKTNLLQMV 474
Query: 652 GSEREYRSTLGLVKSLELSNNNLNGAVPEEIMDLVGLVALNLSKNHLTGQISPKIGQLKS 711
GS ++ L LS+ NL + L + L+LS N LTG + LK
Sbjct: 475 GS----------LEILILSSCNLLSIDQQAFHGLRNVNHLDLSHNSLTGDSMDALSHLKG 524
Query: 712 LDFLDLSRNQLVGGIPSSLSQLSGLSVMDLSYNNLSGKIPTV----------TQLQSFND 761
L +L+++ N + P L LS S+++LS+N L + +L+ +
Sbjct: 525 L-YLNMASNNIRIIPPHLLPALSQQSIINLSHNPLDCTCSNIHFITWYKENLHKLEDSEE 583
Query: 762 TVYAGNPELCGLPL 775
T A P L G+ L
Sbjct: 584 TTCANPPSLRGVKL 597
Score = 30.8 bits (68), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 52/218 (23%), Positives = 96/218 (44%), Gaps = 48/218 (22%)
Query: 535 IQTLSLHNNRLTGELSSSFRNCSQLRLLDLGKNALYGEIPTWMGESLSNLIVLSLKSNKF 594
+++++L +R + SS+FR ++++ LDL L G +P+ + E +++L L L +N F
Sbjct: 255 VESINLQKHRFSDLSSSTFRCFTRVQELDLTAAHLNG-LPSGI-EGMNSLKKLVLNANSF 312
Query: 595 HGKIPFQLCQLAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKDKLMLTWKGSE 654
QLCQ+ +S P+++D L KG+
Sbjct: 313 D-----QLCQI-----------------------------NAASFPSLRD---LYIKGNM 335
Query: 655 REYR------STLGLVKSLELSNNNLNGA--VPEEIMDLVGLVALNLSKNHLTGQISPKI 706
R+ L ++ L+LS++++ + ++ +L L LNLS N G
Sbjct: 336 RKLDLGTRCLEKLENLQKLDLSHSDIEASDCCNLQLKNLRHLQYLNLSYNEPLGLEDQAF 395
Query: 707 GQLKSLDFLDLSRNQLVGGIPSS-LSQLSGLSVMDLSY 743
+ L+ LD++ L P S L L V++LS+
Sbjct: 396 KECPQLELLDVAFTHLHVKAPHSPFQNLHLLRVLNLSH 433
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 39.7 bits (91), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 55/202 (27%), Positives = 87/202 (43%), Gaps = 30/202 (14%)
Query: 567 NALYGEIPTWMGESLSNLIVLSLKSNKFHGKIPFQLCQLAFLQVLDLSLNNISGK----- 621
N +G+ PT +SL L + SNK G F L L+ LDLS N +S K
Sbjct: 337 NCKFGQFPTLKLKSLKRL---TFTSNK--GGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQ 391
Query: 622 ----------IPKCFNNFTAMTQERSSDPTIKDKLMLTWKGSEREYRSTLGLVKSL---- 667
+ FN M+ S+ ++ L ++ S + S + SL
Sbjct: 392 SDFGTISLKYLDLSFNGVITMS---SNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLI 448
Query: 668 --ELSNNNLNGAVPEEIMDLVGLVALNLSKNHLTGQISPKI-GQLKSLDFLDLSRNQLVG 724
++S+ + A L L L ++ N P I +L++L FLDLS+ QL
Sbjct: 449 YLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQ 508
Query: 725 GIPSSLSQLSGLSVMDLSYNNL 746
P++ + LS L V+++S+NN
Sbjct: 509 LSPTAFNSLSSLQVLNMSHNNF 530
Score = 33.1 bits (74), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 82/311 (26%), Positives = 119/311 (38%), Gaps = 61/311 (19%)
Query: 323 YLENSLTGVISESFFSNISNLKELHLANNPLVLKLSHDWVPPFQLIIISLSSCKIGPHFP 382
YL+ L G+I F+ ++N+ L + + ++ D+ F + L +CK G FP
Sbjct: 290 YLDYYLDGIID--LFNCLTNVSSFSLVS--VTIERVKDFSYNFGWQHLELVNCKFG-QFP 344
Query: 383 KWLQTQNQIELLDISNTGISDTIPDWFWNLSNKFS--------FLDLASNQIKGKLPNLS 434
L+ ++ L SN G N FS FLDL+ N + K
Sbjct: 345 T-LKLKSLKRLTFTSNKG------------GNAFSEVDLPSLEFLDLSRNGLSFKGCCSQ 391
Query: 435 SRFGT-SNPGIDISSNHFEGLIXXXXXXXXXXXXXXXXXXGS-----ISFLCSISGSKLT 488
S FGT S +D+S F G+I S F +S L
Sbjct: 392 SDFGTISLKYLDLS---FNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLI 448
Query: 489 YVDLSSNLLSGKLPDCWWTFDSLVILNLENNSFSGR-IPDSMGFLQNIQTLSLHNNRLTG 547
Y+D+S + SL +L + NSF +PD L+N+
Sbjct: 449 YLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNL------------ 496
Query: 548 ELSSSFRNCSQLRLLDLGKNALYGEIPTWMGESLSNLIVLSLKSNKFHGKIPFQLCQLAF 607
+F + SQ +L L A SLS+L VL++ N F F L
Sbjct: 497 ----TFLDLSQCQLEQLSPTAF---------NSLSSLQVLNMSHNNFFSLDTFPYKCLNS 543
Query: 608 LQVLDLSLNNI 618
LQVLD SLN+I
Sbjct: 544 LQVLDYSLNHI 554
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 55/202 (27%), Positives = 87/202 (43%), Gaps = 30/202 (14%)
Query: 567 NALYGEIPTWMGESLSNLIVLSLKSNKFHGKIPFQLCQLAFLQVLDLSLNNISGK----- 621
N +G+ PT +SL L + SNK G F L L+ LDLS N +S K
Sbjct: 313 NCKFGQFPTLKLKSLKRL---TFTSNK--GGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQ 367
Query: 622 ----------IPKCFNNFTAMTQERSSDPTIKDKLMLTWKGSEREYRSTLGLVKSL---- 667
+ FN M+ S+ ++ L ++ S + S + SL
Sbjct: 368 SDFGTTSLKYLDLSFNGVITMS---SNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLI 424
Query: 668 --ELSNNNLNGAVPEEIMDLVGLVALNLSKNHLTGQISPKI-GQLKSLDFLDLSRNQLVG 724
++S+ + A L L L ++ N P I +L++L FLDLS+ QL
Sbjct: 425 YLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQ 484
Query: 725 GIPSSLSQLSGLSVMDLSYNNL 746
P++ + LS L V+++S+NN
Sbjct: 485 LSPTAFNSLSSLQVLNMSHNNF 506
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 56/138 (40%), Gaps = 26/138 (18%)
Query: 482 ISGSKLTYVDLSSNLLSGKLPDCWWTFDSLVILNLENNSFSGR-IPDSMGFLQNIQTLSL 540
+S L Y+D+S + SL +L + NSF +PD L+N+
Sbjct: 418 LSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNL----- 472
Query: 541 HNNRLTGELSSSFRNCSQLRLLDLGKNALYGEIPTWMGESLSNLIVLSLKSNKFHGKIPF 600
+F + SQ +L L A SLS+L VL++ N F F
Sbjct: 473 -----------TFLDLSQCQLEQLSPTAF---------NSLSSLQVLNMSHNNFFSLDTF 512
Query: 601 QLCQLAFLQVLDLSLNNI 618
L LQVLD SLN+I
Sbjct: 513 PYKCLNSLQVLDYSLNHI 530
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 38.9 bits (89), Expect = 0.010, Method: Composition-based stats.
Identities = 31/105 (29%), Positives = 51/105 (48%), Gaps = 2/105 (1%)
Query: 530 GFLQNIQTLSLHNNRLTGELSSSFRNCSQLRLLDLGKNALYGEIPTWMGESLSNLIVLSL 589
G N Q L LH+N++T F + L+ L LG N L G +P + +SL+ L VL L
Sbjct: 37 GIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQL-GALPVGVFDSLTQLTVLDL 95
Query: 590 KSNKFHGKIPFQLCQLAFLQVLDLSLNNISGKIPKCFNNFTAMTQ 634
+N+ +L L+ L + N ++ ++P+ T +T
Sbjct: 96 GTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTH 139
Score = 36.6 bits (83), Expect = 0.053, Method: Composition-based stats.
Identities = 34/122 (27%), Positives = 58/122 (47%), Gaps = 2/122 (1%)
Query: 513 ILNLENNSFSGRIPDSMGFLQNIQTLSLHNNRLTGELSSSFRNCSQLRLLDLGKNALYGE 572
IL L +N + P L N++ L L +N+L F + +QL +LDLG N L
Sbjct: 44 ILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQL-TV 102
Query: 573 IPTWMGESLSNLIVLSLKSNKFHGKIPFQLCQLAFLQVLDLSLNNISGKIPKCFNNFTAM 632
+P+ + + L +L L + NK ++P + +L L L L N + F+ +++
Sbjct: 103 LPSAVFDRLVHLKELFMCCNKL-TELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSL 161
Query: 633 TQ 634
T
Sbjct: 162 TH 163
>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|B Chain B, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|C Chain C, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|D Chain D, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|E Chain E, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|F Chain F, Crystal Structure Of The Biglycan Dimer Core Protein
Length = 332
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 59/236 (25%), Positives = 100/236 (42%), Gaps = 15/236 (6%)
Query: 512 VILNLENNSFSGRIPDSMGFLQNIQTLSLHNNRLTGELSSSFRNCSQLRLLDLGKNALYG 571
+L+L+NN S D LQ++ L L NN+++ +F +L+ L + KN L
Sbjct: 57 TLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV- 115
Query: 572 EIPTWMGESLSNLIVLSLKSNKFHGKIPFQLCQLAFLQVLDLSLNNISGKIPKCFNNFTA 631
EIP + SL L + + K + L + +++ L N SG P F+
Sbjct: 116 EIPPNLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLEN-SGFEPGAFDGL-K 173
Query: 632 MTQERSSDPTIKDKLMLTWKGSEREYRSTLGLVKSLELSNNNLNGAVPEEIMDLVGLVAL 691
+ R S+ + G ++ TL L L +N + E+++ L L
Sbjct: 174 LNYLRISEAKL--------TGIPKDLPETLN---ELHLDHNKIQAIELEDLLRYSKLYRL 222
Query: 692 NLSKNHLTGQISPKIGQLKSLDFLDLSRNQLVGGIPSSLSQLSGLSVMDLSYNNLS 747
L N + + + L +L L L N+L +P+ L L L V+ L NN++
Sbjct: 223 GLGHNQIRMIENGSLSFLPTLRELHLDNNKL-SRVPAGLPDLKLLQVVYLHTNNIT 277
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 38.5 bits (88), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 48/108 (44%), Gaps = 6/108 (5%)
Query: 255 IPESFQHMVYLEHLRLSFNELEGGIPKFFGNMCSLITLNLSNNKLSGQLSEIIQNLSSGC 314
+P+ + +L + LS N + + F NM L+TL LS N+L L
Sbjct: 46 VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGL---- 101
Query: 315 LENSLKSLYLENSLTGVISESFFSNISNLKELHLANNPLVLKLSHDWV 362
SL+ L L + V+ E F+++S L L + NPL + W+
Sbjct: 102 --KSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCDCNMQWL 147
Score = 34.7 bits (78), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 42/86 (48%)
Query: 487 LTYVDLSSNLLSGKLPDCWWTFDSLVILNLENNSFSGRIPDSMGFLQNIQTLSLHNNRLT 546
LT +DLS+N +S + L+ L L N P + L++++ LSLH N ++
Sbjct: 56 LTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDIS 115
Query: 547 GELSSSFRNCSQLRLLDLGKNALYGE 572
+F + S L L +G N LY +
Sbjct: 116 VVPEGAFNDLSALSHLAIGANPLYCD 141
Score = 34.7 bits (78), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
Query: 95 SFNDFSGSPIPEFIGSLSKLRYLDLFGTVFAGPIPPQLGNLSRLQHLDLGSNYLFSTGNL 154
S+N P P L LR L L G + +LS L HL +G+N L+ N+
Sbjct: 86 SYNRLRCIP-PRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCDCNM 144
Query: 155 DWLS 158
WLS
Sbjct: 145 QWLS 148
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 41/79 (51%), Gaps = 2/79 (2%)
Query: 514 LNLENNSFSGRIPDSMGFLQNIQTLSLHNNRLTGELSSSFRNCSQLRLLDLGKNALYGEI 573
L L+ N F+ +P + +++ + L NNR++ + SF N +QL L L N L I
Sbjct: 36 LYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRC-I 93
Query: 574 PTWMGESLSNLIVLSLKSN 592
P + L +L +LSL N
Sbjct: 94 PPRTFDGLKSLRLLSLHGN 112
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 38.1 bits (87), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 130/541 (24%), Positives = 202/541 (37%), Gaps = 104/541 (19%)
Query: 239 SIFISIDLGFNQLQGSIPESFQHMVYLEHLRLSFNELEGGIPKFFGNMCSLITLNL---- 294
S S+D+GFN + PE Q + L+ L L NEL K F +L L+L
Sbjct: 59 SQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNS 118
Query: 295 ----SNNKLSGQLSEIIQNLSSGCLENSLKSLYL-----------ENSLTGVISESF--F 337
NN Q + I +LS L ++ + N + + SE F
Sbjct: 119 IQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIF 178
Query: 338 SNISNLKELHLANNPLVLKLSHDWVPPFQLIIISLSSCKIGPHFPKWLQTQ---NQIELL 394
+N S+LK+L L++N + + +L + L++ ++GP + L + I L
Sbjct: 179 AN-SSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNL 237
Query: 395 DISNTGISDTIPDWFWNLS-NKFSFLDLASNQIK-------GKLPNLSSRFGTSNPGIDI 446
+SN+ +S T F L + LDL+ N + LP L F N +
Sbjct: 238 SLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHL 297
Query: 447 SSNHFEGLIXXXXXXXXXXXXXXXXXXGSISFLCSISGSKLTYVDLSSNLLSGKLPDCWW 506
S+ GL SIS + L +D S +
Sbjct: 298 FSHSLHGLFNVRYLNLKRSFTKQ-----------SISLASLPKIDDFS----------FQ 336
Query: 507 TFDSLVILNLENNSFSGRIPDSMGFLQNIQTLSLHNNRLTGELSSSFRNCSQLRLLDLGK 566
L LN+E+N G + L N++ LSL N+ +S R + + L
Sbjct: 337 WLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSF------TSLRTLTNETFVSLAH 390
Query: 567 NALYGEIPTWMGESLSNLIVLSLKSNKFHGKIPFQLCQLAFLQVLDLSLNNISGKIPKCF 626
+ L+ +L+L NK L L+VLDL LN I ++
Sbjct: 391 SPLH---------------ILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQEL---- 431
Query: 627 NNFTAMTQERSSDPTIKDKLMLTWKGSEREYRSTLGLVKSLELSNNNLNGAVPEEIMDLV 686
QE W+G E + L K L+L+ N+ VP ++
Sbjct: 432 -----TGQE--------------WRGLENIFEIYLSYNKYLQLTRNSF-ALVPSLQRLML 471
Query: 687 GLVALNLSKNHLTGQISPKIGQLKSLDFLDLSRNQLVGGIPSSLSQLSGLSVMDLSYNNL 746
VAL ++ SP L++L LDLS N + L L L ++DL +NNL
Sbjct: 472 RRVAL----KNVDSSPSP-FQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNL 526
Query: 747 S 747
+
Sbjct: 527 A 527
Score = 32.7 bits (73), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 73/273 (26%), Positives = 113/273 (41%), Gaps = 78/273 (28%)
Query: 524 RIPDSMGFLQNIQTLSLHNNRLTGELSSSFRNCSQLRLLDLGKNALYGEIPTWMGESLSN 583
++PD + NI L+L +N+L +++F SQL LD+G N +
Sbjct: 28 QVPDDLP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTI-------------- 71
Query: 584 LIVLSLKSNKFHGKIPFQLCQ-LAFLQVLDLSLNNISGKIPKCFNNFTAMT--------- 633
K+ +LCQ L L+VL+L N +S K F T +T
Sbjct: 72 ------------SKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSI 119
Query: 634 QERSSDPTIKDKLMLTWKGSEREYRST-LG------LVKSLELSNNNLNGAVPEEIMDLV 686
Q+ ++P +K K ++T S ST LG ++ L LSNN + EE +D+
Sbjct: 120 QKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEE-LDIF 178
Query: 687 G---LVALNLSKN----------HLTG----------QISPKIGQLKSLDF-------LD 716
L L LS N H G Q+ P + + L+ L
Sbjct: 179 ANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLS 238
Query: 717 LSRNQLVGGIPSSLSQL--SGLSVMDLSYNNLS 747
LS +QL ++ L + L+++DLSYNNL+
Sbjct: 239 LSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLN 271
Score = 29.3 bits (64), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 38/84 (45%)
Query: 511 LVILNLENNSFSGRIPDSMGFLQNIQTLSLHNNRLTGELSSSFRNCSQLRLLDLGKNALY 570
L ILNLE+N F + L ++ + L N L +S F N L+ L+L KN +
Sbjct: 548 LHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLIT 607
Query: 571 GEIPTWMGESLSNLIVLSLKSNKF 594
G + NL L ++ N F
Sbjct: 608 SVEKKVFGPAFRNLTELDMRFNPF 631
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 38.1 bits (87), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 130/541 (24%), Positives = 202/541 (37%), Gaps = 104/541 (19%)
Query: 239 SIFISIDLGFNQLQGSIPESFQHMVYLEHLRLSFNELEGGIPKFFGNMCSLITLNL---- 294
S S+D+GFN + PE Q + L+ L L NEL K F +L L+L
Sbjct: 54 SQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNS 113
Query: 295 ----SNNKLSGQLSEIIQNLSSGCLENSLKSLYL-----------ENSLTGVISESF--F 337
NN Q + I +LS L ++ + N + + SE F
Sbjct: 114 IQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIF 173
Query: 338 SNISNLKELHLANNPLVLKLSHDWVPPFQLIIISLSSCKIGPHFPKWLQTQ---NQIELL 394
+N S+LK+L L++N + + +L + L++ ++GP + L + I L
Sbjct: 174 AN-SSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNL 232
Query: 395 DISNTGISDTIPDWFWNLS-NKFSFLDLASNQIK-------GKLPNLSSRFGTSNPGIDI 446
+SN+ +S T F L + LDL+ N + LP L F N +
Sbjct: 233 SLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHL 292
Query: 447 SSNHFEGLIXXXXXXXXXXXXXXXXXXGSISFLCSISGSKLTYVDLSSNLLSGKLPDCWW 506
S+ GL SIS + L +D S +
Sbjct: 293 FSHSLHGLFNVRYLNLKRSFTKQ-----------SISLASLPKIDDFS----------FQ 331
Query: 507 TFDSLVILNLENNSFSGRIPDSMGFLQNIQTLSLHNNRLTGELSSSFRNCSQLRLLDLGK 566
L LN+E+N G + L N++ LSL N+ +S R + + L
Sbjct: 332 WLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNS------FTSLRTLTNETFVSLAH 385
Query: 567 NALYGEIPTWMGESLSNLIVLSLKSNKFHGKIPFQLCQLAFLQVLDLSLNNISGKIPKCF 626
+ L+ +L+L NK L L+VLDL LN I ++
Sbjct: 386 SPLH---------------ILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQEL---- 426
Query: 627 NNFTAMTQERSSDPTIKDKLMLTWKGSEREYRSTLGLVKSLELSNNNLNGAVPEEIMDLV 686
QE W+G E + L K L+L+ N+ VP ++
Sbjct: 427 -----TGQE--------------WRGLENIFEIYLSYNKYLQLTRNSF-ALVPSLQRLML 466
Query: 687 GLVALNLSKNHLTGQISPKIGQLKSLDFLDLSRNQLVGGIPSSLSQLSGLSVMDLSYNNL 746
VAL ++ SP L++L LDLS N + L L L ++DL +NNL
Sbjct: 467 RRVAL----KNVDSSPSP-FQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNL 521
Query: 747 S 747
+
Sbjct: 522 A 522
Score = 33.1 bits (74), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 73/273 (26%), Positives = 113/273 (41%), Gaps = 78/273 (28%)
Query: 524 RIPDSMGFLQNIQTLSLHNNRLTGELSSSFRNCSQLRLLDLGKNALYGEIPTWMGESLSN 583
++PD + NI L+L +N+L +++F SQL LD+G N +
Sbjct: 23 QVPDDLP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTI-------------- 66
Query: 584 LIVLSLKSNKFHGKIPFQLCQ-LAFLQVLDLSLNNISGKIPKCFNNFTAMT--------- 633
K+ +LCQ L L+VL+L N +S K F T +T
Sbjct: 67 ------------SKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSI 114
Query: 634 QERSSDPTIKDKLMLTWKGSEREYRST-LG------LVKSLELSNNNLNGAVPEEIMDLV 686
Q+ ++P +K K ++T S ST LG ++ L LSNN + EE +D+
Sbjct: 115 QKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEE-LDIF 173
Query: 687 G---LVALNLSKN----------HLTG----------QISPKIGQLKSLDF-------LD 716
L L LS N H G Q+ P + + L+ L
Sbjct: 174 ANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLS 233
Query: 717 LSRNQLVGGIPSSLSQL--SGLSVMDLSYNNLS 747
LS +QL ++ L + L+++DLSYNNL+
Sbjct: 234 LSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLN 266
Score = 29.3 bits (64), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 38/84 (45%)
Query: 511 LVILNLENNSFSGRIPDSMGFLQNIQTLSLHNNRLTGELSSSFRNCSQLRLLDLGKNALY 570
L ILNLE+N F + L ++ + L N L +S F N L+ L+L KN +
Sbjct: 543 LHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLIT 602
Query: 571 GEIPTWMGESLSNLIVLSLKSNKF 594
G + NL L ++ N F
Sbjct: 603 SVEKKVFGPAFRNLTELDMRFNPF 626
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 38.1 bits (87), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 130/541 (24%), Positives = 202/541 (37%), Gaps = 104/541 (19%)
Query: 239 SIFISIDLGFNQLQGSIPESFQHMVYLEHLRLSFNELEGGIPKFFGNMCSLITLNL---- 294
S S+D+GFN + PE Q + L+ L L NEL K F +L L+L
Sbjct: 49 SQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNS 108
Query: 295 ----SNNKLSGQLSEIIQNLSSGCLENSLKSLYL-----------ENSLTGVISESF--F 337
NN Q + I +LS L ++ + N + + SE F
Sbjct: 109 IQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIF 168
Query: 338 SNISNLKELHLANNPLVLKLSHDWVPPFQLIIISLSSCKIGPHFPKWLQTQ---NQIELL 394
+N S+LK+L L++N + + +L + L++ ++GP + L + I L
Sbjct: 169 AN-SSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNL 227
Query: 395 DISNTGISDTIPDWFWNLS-NKFSFLDLASNQIK-------GKLPNLSSRFGTSNPGIDI 446
+SN+ +S T F L + LDL+ N + LP L F N +
Sbjct: 228 SLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHL 287
Query: 447 SSNHFEGLIXXXXXXXXXXXXXXXXXXGSISFLCSISGSKLTYVDLSSNLLSGKLPDCWW 506
S+ GL SIS + L +D S +
Sbjct: 288 FSHSLHGLFNVRYLNLKRSFTKQ-----------SISLASLPKIDDFS----------FQ 326
Query: 507 TFDSLVILNLENNSFSGRIPDSMGFLQNIQTLSLHNNRLTGELSSSFRNCSQLRLLDLGK 566
L LN+E+N G + L N++ LSL N+ +S R + + L
Sbjct: 327 WLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNS------FTSLRTLTNETFVSLAH 380
Query: 567 NALYGEIPTWMGESLSNLIVLSLKSNKFHGKIPFQLCQLAFLQVLDLSLNNISGKIPKCF 626
+ L+ +L+L NK L L+VLDL LN I ++
Sbjct: 381 SPLH---------------ILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQEL---- 421
Query: 627 NNFTAMTQERSSDPTIKDKLMLTWKGSEREYRSTLGLVKSLELSNNNLNGAVPEEIMDLV 686
QE W+G E + L K L+L+ N+ VP ++
Sbjct: 422 -----TGQE--------------WRGLENIFEIYLSYNKYLQLTRNSF-ALVPSLQRLML 461
Query: 687 GLVALNLSKNHLTGQISPKIGQLKSLDFLDLSRNQLVGGIPSSLSQLSGLSVMDLSYNNL 746
VAL ++ SP L++L LDLS N + L L L ++DL +NNL
Sbjct: 462 RRVAL----KNVDSSPSP-FQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNL 516
Query: 747 S 747
+
Sbjct: 517 A 517
Score = 32.7 bits (73), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 73/273 (26%), Positives = 113/273 (41%), Gaps = 78/273 (28%)
Query: 524 RIPDSMGFLQNIQTLSLHNNRLTGELSSSFRNCSQLRLLDLGKNALYGEIPTWMGESLSN 583
++PD + NI L+L +N+L +++F SQL LD+G N +
Sbjct: 18 QVPDDLP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTI-------------- 61
Query: 584 LIVLSLKSNKFHGKIPFQLCQ-LAFLQVLDLSLNNISGKIPKCFNNFTAMT--------- 633
K+ +LCQ L L+VL+L N +S K F T +T
Sbjct: 62 ------------SKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSI 109
Query: 634 QERSSDPTIKDKLMLTWKGSEREYRST-LG------LVKSLELSNNNLNGAVPEEIMDLV 686
Q+ ++P +K K ++T S ST LG ++ L LSNN + EE +D+
Sbjct: 110 QKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEE-LDIF 168
Query: 687 G---LVALNLSKN----------HLTG----------QISPKIGQLKSLDF-------LD 716
L L LS N H G Q+ P + + L+ L
Sbjct: 169 ANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLS 228
Query: 717 LSRNQLVGGIPSSLSQL--SGLSVMDLSYNNLS 747
LS +QL ++ L + L+++DLSYNNL+
Sbjct: 229 LSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLN 261
Score = 29.3 bits (64), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 38/84 (45%)
Query: 511 LVILNLENNSFSGRIPDSMGFLQNIQTLSLHNNRLTGELSSSFRNCSQLRLLDLGKNALY 570
L ILNLE+N F + L ++ + L N L +S F N L+ L+L KN +
Sbjct: 538 LHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLIT 597
Query: 571 GEIPTWMGESLSNLIVLSLKSNKF 594
G + NL L ++ N F
Sbjct: 598 SVEKKVFGPAFRNLTELDMRFNPF 621
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 37.7 bits (86), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 60/240 (25%), Positives = 92/240 (38%), Gaps = 39/240 (16%)
Query: 536 QTLSLHNNRLTGELSSSFRNCSQLRLLDLGKNALYGEIPTWMGESLSNLIVLSLKSNKFH 595
Q + LH NR++ ++SF++C L +L L NAL G + + F
Sbjct: 34 QRIFLHGNRISYVPAASFQSCRNLTILWLHSNALAG-----------------IDAAAFT 76
Query: 596 GKIPFQLCQLAFLQVLDLSLNNISGKI--PKCFNNFTAMTQERSSDPTIKDKLMLTWKGS 653
G L L+ LDLS +N ++ P F + +++ ++G
Sbjct: 77 G--------LTLLEQLDLS-DNAQLRVVDPTTFRGLGHLHTLHLDRCGLQELGPGLFRG- 126
Query: 654 EREYRSTLGLVKSLELSNNNLNGAVPEEIMDLVGLVALNLSKNHLTGQISPKIGQLKSLD 713
L ++ L L +NNL DL L L L N + L SLD
Sbjct: 127 -------LAALQYLYLQDNNLQALPDNTFRDLGNLTHLFLHGNRIPSVPEHAFRGLHSLD 179
Query: 714 FLDLSRNQLVGGIPSSLSQLSGLSVMDLSYNNLSGKIPT--VTQLQSFNDTVYAGNPELC 771
L L +N + P + L L + L NNLS +P + L+S NP +C
Sbjct: 180 RLLLHQNHVARVHPHAFRDLGRLMTLYLFANNLS-MLPAEVLVPLRSLQYLRLNDNPWVC 238
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 37.7 bits (86), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 43/156 (27%), Positives = 66/156 (42%), Gaps = 12/156 (7%)
Query: 243 SIDLGFNQLQGSIPESFQHMVYLEHLRLSFNELEGGIPKFFGNMCSLITLNLSNNKLSGQ 302
+ DL +++ + F H LE L L+ NE+ F + L+ LNLS N L
Sbjct: 279 TCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSI 338
Query: 303 LSEIIQNLSSGCLENSLKSLYLENSLTGVISESFFSNISNLKELHLANNPL--VLKLSHD 360
S + +NL + L+ L L + + + F + NLKEL L N L V D
Sbjct: 339 DSRMFENL------DKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFD 392
Query: 361 WVPPFQLIIISLS----SCKIGPHFPKWLQTQNQIE 392
+ Q I + + SC + +WL +Q E
Sbjct: 393 RLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQKE 428
Score = 37.4 bits (85), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 83/334 (24%), Positives = 114/334 (34%), Gaps = 70/334 (20%)
Query: 510 SLVILNLENNSFSGRIPDSMGFLQNIQTLSLHNNRLTGELSSS--FRNCSQLRLLDLGKN 567
SL+IL L+ N F + L N++ L+L L G + S F+ + L +L L N
Sbjct: 80 SLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDN 139
Query: 568 ALYGEIPTWMGESLSNLIVLSLKSNK-----------FHGK------------------- 597
+ P ++ VL L NK F GK
Sbjct: 140 NIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYW 199
Query: 598 IPFQLCQLAF----LQVLDLSLNNISGKIPKCFNNFTAMTQERS-------------SDP 640
+ ++ C F + LDLS N + K F + A T+ +S
Sbjct: 200 LGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHT 259
Query: 641 TIKDKLMLTWKGSEREYRSTLGLVKS------------------LELSNNNLNGAVPEEI 682
KD T+KG E T L KS L L+ N +N
Sbjct: 260 NFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAF 319
Query: 683 MDLVGLVALNLSKNHLTGQISPKIGQLKSLDFLDLSRNQLVGGIPSSLSQLSGLSVMDLS 742
L L+ LNLS+N L S L L+ LDLS N + S L L + L
Sbjct: 320 WGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALD 379
Query: 743 YNNLSGKIP--TVTQLQSFNDTVYAGNPELCGLP 774
N L +P +L S NP C P
Sbjct: 380 TNQLKS-VPDGIFDRLTSLQKIWLHTNPWDCSCP 412
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 37.4 bits (85), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 79/335 (23%), Positives = 129/335 (38%), Gaps = 27/335 (8%)
Query: 490 VDLSSNLLSGKLPDCWWTFDSLVILNLENNSFSGRIPDSMGFLQNIQTLSLHNNRLTGEL 549
+DL N + D + +F L L L N S P + L N++TL L +NRL
Sbjct: 37 LDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIP 96
Query: 550 SSSFRNCSQLRLLDLGKNALYGEIPTWMGESLSNLIVLSLKSNKFHGKIPFQLCQLAFLQ 609
F S L LD+ +N + + +M + L NL L + N L L+
Sbjct: 97 LGVFTGLSNLTKLDISENKIVILL-DYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLE 155
Query: 610 VLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKDKLMLTWKGSER---------EYRST 660
L L N++ + ++ + R I ++K R Y T
Sbjct: 156 QLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDT 215
Query: 661 L------GL-VKSLELSNNNLNGAVPEEIMDLVGLVALNLSKNHLTGQISPKIGQLKSLD 713
+ GL + SL +++ NL + LV L LNLS N ++ + +L L
Sbjct: 216 MTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQ 275
Query: 714 FLDLSRNQLVGGIPSSLSQLSGLSVMDLSYNNLSGKIPTVTQ-LQSFNDTVYAGNPELCG 772
+ L QL P + L+ L V+++S N L+ +V + + + NP C
Sbjct: 276 EIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACD 335
Query: 773 LPL---------PNKCRDEESAAGPGITEGRDDAD 798
L N R + + A P +G++ D
Sbjct: 336 CRLLWVFRRRWRLNFNRQQPTCATPEFVQGKEFKD 370
Score = 37.0 bits (84), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 57/116 (49%), Gaps = 7/116 (6%)
Query: 244 IDLGFNQLQGSIPESFQHMVYLEHLRLSFNELEGGIPKFFGNMCSLITLNLSNNKLSGQL 303
+DLG N+++ + F +LE L L+ N + P F N+ +L TL L +N+L
Sbjct: 37 LDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIP 96
Query: 304 SEIIQNLSSGCLENSLKSLYLENSLTGVISESFFSNISNLKELHLANNPLVLKLSH 359
+ LS +L L + + ++ + F ++ NLK L + +N LV +SH
Sbjct: 97 LGVFTGLS------NLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVY-ISH 145
Score = 34.3 bits (77), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 47/105 (44%), Gaps = 6/105 (5%)
Query: 258 SFQHMVYLEHLRLSFNELEGGIPKFFGNMCSLITLNLSNNKLSGQLSEIIQNLSSGCLEN 317
+ +H+VYL L LS+N + + L + L + GQL+ + G N
Sbjct: 243 AVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQL----VGGQLAVVEPYAFRGL--N 296
Query: 318 SLKSLYLENSLTGVISESFFSNISNLKELHLANNPLVLKLSHDWV 362
L+ L + + + ES F ++ NL+ L L +NPL WV
Sbjct: 297 YLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCRLLWV 341
Score = 29.6 bits (65), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 45/192 (23%), Positives = 73/192 (38%), Gaps = 33/192 (17%)
Query: 557 SQLRLLDLGKNALYGEIPTWMGESLSNLIVLSLKSNKFHGKIPFQLCQLAFLQVLDLSLN 616
++ RLLDLGKN + +L ++F L+ L+L+ N
Sbjct: 32 TETRLLDLGKNR-----------------IKTLNQDEF--------ASFPHLEELELNEN 66
Query: 617 NISGKIPKCFNNFTAMTQERSSDPTIKDKLMLTWKGSEREYRSTLGLVKSLELSNNNLNG 676
+S P FNN + +K + + G L + L++S N +
Sbjct: 67 IVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTG--------LSNLTKLDISENKIVI 118
Query: 677 AVPEEIMDLVGLVALNLSKNHLTGQISPKIGQLKSLDFLDLSRNQLVGGIPSSLSQLSGL 736
+ DL L +L + N L L SL+ L L + L +LS L GL
Sbjct: 119 LLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGL 178
Query: 737 SVMDLSYNNLSG 748
V+ L + N++
Sbjct: 179 IVLRLRHLNINA 190
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 37.4 bits (85), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 54/97 (55%), Gaps = 8/97 (8%)
Query: 220 VLSDNNL----TSSIYPWLPNISSIFISIDLGFNQLQGSIPESFQHMVYLEHLRLSFNEL 275
+L+DN L + ++ LP++ + ++L NQL G P +F+ +++ L+L N++
Sbjct: 35 LLNDNELGRISSDGLFGRLPHL----VKLELKRNQLTGIEPNAFEGASHIQELQLGENKI 90
Query: 276 EGGIPKFFGNMCSLITLNLSNNKLSGQLSEIIQNLSS 312
+ K F + L TLNL +N++S + ++L+S
Sbjct: 91 KEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNS 127
Score = 33.9 bits (76), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 48/101 (47%), Gaps = 3/101 (2%)
Query: 518 NNSFSGRIPDS--MGFLQNIQTLSLHNNRLTGELSSSFRNCSQLRLLDLGKNALYGEIPT 575
N++ GRI G L ++ L L N+LTG ++F S ++ L LG+N + EI
Sbjct: 37 NDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIK-EISN 95
Query: 576 WMGESLSNLIVLSLKSNKFHGKIPFQLCQLAFLQVLDLSLN 616
M L L L+L N+ +P L L L+L+ N
Sbjct: 96 KMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136
Score = 32.7 bits (73), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 53/123 (43%), Gaps = 11/123 (8%)
Query: 663 LVKSLELSNNNLNGAVPEEIMDLVGLVALNLSKNHLTGQISPKI----GQLKSLDFLDLS 718
LVK LEL N L G P + L L +N + +IS K+ QLK+L+ D
Sbjct: 56 LVK-LELKRNQLTGIEPNAFEGASHIQELQLGENKIK-EISNKMFLGLHQLKTLNLYD-- 111
Query: 719 RNQLVGGIPSSLSQLSGLSVMDLSYNNLSGKIPTVTQLQSFNDTVYAGNPELCGLPLPNK 778
NQ+ +P S L+ L+ ++L+ N + + G CG P+K
Sbjct: 112 -NQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFAEWLRKKSLNGGAARCG--APSK 168
Query: 779 CRD 781
RD
Sbjct: 169 VRD 171
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 37.4 bits (85), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 52/107 (48%), Gaps = 12/107 (11%)
Query: 249 NQLQGSIPES-FQHMVYLEHLRLSFNELEGGIPKFFGNMCSLITLNLSNNKLSGQLSEII 307
NQLQ S+P+ F + L +L L N+L+ F + +L L+L NN+L
Sbjct: 119 NQLQ-SLPDGVFDKLTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQL-------- 169
Query: 308 QNLSSGCLEN--SLKSLYLENSLTGVISESFFSNISNLKELHLANNP 352
Q+L G + LK L L ++ + + F +++L + L NNP
Sbjct: 170 QSLPEGVFDKLTQLKQLSLNDNQLKSVPDGVFDRLTSLTHIWLLNNP 216
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 49/107 (45%), Gaps = 10/107 (9%)
Query: 249 NQLQGSIPESFQHMVYLEHLRLSFNELEGGIPKFFGNMCSLITLNLSNNKLSGQLSEIIQ 308
NQLQ F + L+ L L N+L+ F + +L L L +N+L Q
Sbjct: 95 NQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLYLYHNQL--------Q 146
Query: 309 NLSSGCLEN--SLKSLYLENSLTGVISESFFSNISNLKELHLANNPL 353
+L G + +L L L+N+ + E F ++ LK+L L +N L
Sbjct: 147 SLPKGVFDKLTNLTRLDLDNNQLQSLPEGVFDKLTQLKQLSLNDNQL 193
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 37.0 bits (84), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 53/188 (28%), Positives = 83/188 (44%), Gaps = 12/188 (6%)
Query: 562 LDLGKNALYGEIPTWMGESLSNLIVLSLKSN--KFHGKIPFQLCQLAFLQVLDLSLNNIS 619
L+L N L +P + + L+ L LSL SN F G L+ LDLS N +
Sbjct: 33 LELESNKLQS-LPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI 91
Query: 620 GKIPKCFNNFTAMTQERSSDPTIKDKLMLTWKGSEREYRSTLGLVKSLELSNNNLNGAVP 679
+NF + Q D + + SE +L + L++S+ + A
Sbjct: 92 TMS----SNFLGLEQLEHLDFQHSN----LKQMSEFSVFLSLRNLIYLDISHTHTRVAFN 143
Query: 680 EEIMDLVGLVALNLSKNHLTGQISPKI-GQLKSLDFLDLSRNQLVGGIPSSLSQLSGLSV 738
L L L ++ N P I +L++L FLDLS+ QL P++ + LS L V
Sbjct: 144 GIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQV 203
Query: 739 MDLSYNNL 746
+++S+NN
Sbjct: 204 LNMSHNNF 211
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 54/138 (39%), Gaps = 26/138 (18%)
Query: 482 ISGSKLTYVDLSSNLLSGKLPDCWWTFDSLVILNLENNSFSGR-IPDSMGFLQNIQTLSL 540
+S L Y+D+S + SL +L + NSF +PD L+N
Sbjct: 123 LSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRN------ 176
Query: 541 HNNRLTGELSSSFRNCSQLRLLDLGKNALYGEIPTWMGESLSNLIVLSLKSNKFHGKIPF 600
L LDL + L PT SLS+L VL++ N F F
Sbjct: 177 ------------------LTFLDLSQCQLEQLSPTAFN-SLSSLQVLNMSHNNFFSLDTF 217
Query: 601 QLCQLAFLQVLDLSLNNI 618
L LQVLD SLN+I
Sbjct: 218 PYKCLNSLQVLDYSLNHI 235
>pdb|1M9L|A Chain A, Relaxation-Based Refined Structure Of Chlamydomonas Outer
Arm Dynein Light Chain 1
Length = 199
Score = 37.0 bits (84), Expect = 0.049, Method: Composition-based stats.
Identities = 38/115 (33%), Positives = 56/115 (48%), Gaps = 13/115 (11%)
Query: 659 STLGLVKSLELSNNNLNGAVPEEIMDLVG---LVALNLSKNHLTGQISPKIGQLKSLDFL 715
STL K L LS NN+ E+I L G L L+L +N L +I +L+ L
Sbjct: 46 STLKACKHLALSTNNI-----EKISSLSGMENLRILSLGRN-LIKKIENLDAVADTLEEL 99
Query: 716 DLSRNQLVGGIPSSLSQLSGLSVMDLSYNNLS--GKIPTVTQLQSFNDTVYAGNP 768
+S NQ+ S + +L L V+ +S N ++ G+I + L D + AGNP
Sbjct: 100 WISYNQIAS--LSGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNP 152
>pdb|1DS9|A Chain A, Solution Structure Of Chlamydomonas Outer Arm Dynein Light
Chain 1
Length = 198
Score = 36.6 bits (83), Expect = 0.052, Method: Composition-based stats.
Identities = 38/115 (33%), Positives = 56/115 (48%), Gaps = 13/115 (11%)
Query: 659 STLGLVKSLELSNNNLNGAVPEEIMDLVG---LVALNLSKNHLTGQISPKIGQLKSLDFL 715
STL K L LS NN+ E+I L G L L+L +N L +I +L+ L
Sbjct: 45 STLKACKHLALSTNNI-----EKISSLSGMENLRILSLGRN-LIKKIENLDAVADTLEEL 98
Query: 716 DLSRNQLVGGIPSSLSQLSGLSVMDLSYNNLS--GKIPTVTQLQSFNDTVYAGNP 768
+S NQ+ S + +L L V+ +S N ++ G+I + L D + AGNP
Sbjct: 99 WISYNQIAS--LSGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNP 151
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 36.6 bits (83), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 57/125 (45%), Gaps = 8/125 (6%)
Query: 258 SFQHMVYLEHLRLSFNELEGGIPKFFGNMCSLITLNLSNNKLSGQLSEIIQNLSSGCLEN 317
+F+ + L L L +N+L+ F ++ L TL L+NN+L+ + +L+
Sbjct: 54 TFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLT------ 107
Query: 318 SLKSLYLENSLTGVISESFFSNISNLKELHLANNPL--VLKLSHDWVPPFQLIIISLSSC 375
L LYL + + F ++ LKEL L N L + + D + Q + +S +
Sbjct: 108 QLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQL 167
Query: 376 KIGPH 380
+ PH
Sbjct: 168 QSVPH 172
Score = 33.5 bits (75), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 42/82 (51%), Gaps = 7/82 (8%)
Query: 221 LSDNNLTS---SIYPWLPNISSIFISIDLGFNQLQGSIPESFQHMVYLEHLRLSFNELEG 277
L++N L S ++ L + ++ LG NQL+ F + L+ LRL+ N+L+
Sbjct: 90 LANNQLASLPLGVFDHLTQLDKLY----LGGNQLKSLPSGVFDRLTKLKELRLNTNQLQS 145
Query: 278 GIPKFFGNMCSLITLNLSNNKL 299
F + +L TL+LS N+L
Sbjct: 146 IPAGAFDKLTNLQTLSLSTNQL 167
Score = 33.1 bits (74), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 53/129 (41%), Gaps = 1/129 (0%)
Query: 485 SKLTYVDLSSNLLSGKLPDCWWTFDSLVILNLENNSFSGRIPDSMGFLQNIQTLSLHNNR 544
+KLT+++L N L + L L L NN + L + L L N+
Sbjct: 59 TKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQ 118
Query: 545 LTGELSSSFRNCSQLRLLDLGKNALYGEIPTWMGESLSNLIVLSLKSNKFHGKIPFQLCQ 604
L S F ++L+ L L N L IP + L+NL LSL +N+ +
Sbjct: 119 LKSLPSGVFDRLTKLKELRLNTNQLQ-SIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDR 177
Query: 605 LAFLQVLDL 613
L LQ + L
Sbjct: 178 LGKLQTITL 186
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 54/129 (41%), Gaps = 1/129 (0%)
Query: 490 VDLSSNLLSGKLPDCWWTFDSLVILNLENNSFSGRIPDSMGFLQNIQTLSLHNNRLTGEL 549
+DL S L+ + L LNL+ N L + TL L NN+L
Sbjct: 40 LDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLP 99
Query: 550 SSSFRNCSQLRLLDLGKNALYGEIPTWMGESLSNLIVLSLKSNKFHGKIPFQLCQLAFLQ 609
F + +QL L LG N L +P+ + + L+ L L L +N+ +L LQ
Sbjct: 100 LGVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQ 158
Query: 610 VLDLSLNNI 618
L LS N +
Sbjct: 159 TLSLSTNQL 167
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 36.6 bits (83), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 52/106 (49%), Gaps = 6/106 (5%)
Query: 244 IDLGFNQLQGSIPESFQHMVYLEHLRLSFNELEGGIPKFFGNMCSLITLNLSNNKLSGQL 303
++L NQ+Q SF+H+ +LE L+LS N + F + +L TL L +N+L+
Sbjct: 69 LNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIP 128
Query: 304 SEIIQNLSSGCLENSLKSLYLENSLTGVISESFFSNISNLKELHLA 349
+ LS LK L+L N+ I F+ I +L+ L L
Sbjct: 129 NGAFVYLS------KLKELWLRNNPIESIPSYAFNRIPSLRRLDLG 168
Score = 33.5 bits (75), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 44/96 (45%), Gaps = 2/96 (2%)
Query: 531 FLQNIQTLSLHNNRLTGELSSSFRNCSQLRLLDLGKNALYGEIPTWMGESLSNLIVLSLK 590
+L ++ L L NN + S +F LR LDLG+ I E LSNL L+L
Sbjct: 134 YLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLA 193
Query: 591 SNKFHGKIPFQLCQLAFLQVLDLSLNNISGKIPKCF 626
+IP L L L LDLS N++S P F
Sbjct: 194 MCNLR-EIP-NLTPLIKLDELDLSGNHLSAIRPGSF 227
Score = 33.1 bits (74), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 59/224 (26%), Positives = 99/224 (44%), Gaps = 14/224 (6%)
Query: 525 IPDSMGFLQNIQTLSLHNNRLTGELSSSFRNCSQLRLLDLGKNALYG-EIPTWMGESLSN 583
+PD G N + L+LH N++ +SF++ L +L L +N + EI + G L+N
Sbjct: 58 VPD--GISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNG--LAN 113
Query: 584 LIVLSLKSNKFHGKIPFQLCQLAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIK 643
L L L N+ L+ L+ L L N I FN ++ R D
Sbjct: 114 LNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSL---RRLDLGEL 170
Query: 644 DKLMLTWKGSEREYRSTLGLVKSLELSNNNLNGAVPEEIMDLVGLVALNLSKNHLTGQIS 703
+L +G+ L ++ L L+ NL +P + L+ L L+LS NHL+
Sbjct: 171 KRLSYISEGA----FEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLSAIRP 224
Query: 704 PKIGQLKSLDFLDLSRNQLVGGIPSSLSQLSGLSVMDLSYNNLS 747
L L L + ++Q+ ++ L L ++L++NNL+
Sbjct: 225 GSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLT 268
Score = 33.1 bits (74), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 40/69 (57%), Gaps = 2/69 (2%)
Query: 234 LPNISSIFI--SIDLGFNQLQGSIPESFQHMVYLEHLRLSFNELEGGIPKFFGNMCSLIT 291
+PN++ + +DL N L P SFQ +++L+ L + ++++ F N+ SL+
Sbjct: 200 IPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVE 259
Query: 292 LNLSNNKLS 300
+NL++N L+
Sbjct: 260 INLAHNNLT 268
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 44/144 (30%), Positives = 63/144 (43%), Gaps = 10/144 (6%)
Query: 224 NNLTSSIYPWLPNISSIFISIDLGFNQLQGSIPE-SFQHMVYLEHLRLSFNELEGGIPKF 282
NN SI + N +DLG + I E +F+ + L +L L+ L IP
Sbjct: 145 NNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE-IPNL 203
Query: 283 FGNMCSLITLNLSNNKLSGQLSEIIQNLSSGCLENSLKSLYLENSLTGVISESFFSNISN 342
+ L L+LS N LS Q L L+ L++ S VI + F N+ +
Sbjct: 204 TP-LIKLDELDLSGNHLSAIRPGSFQGLMH------LQKLWMIQSQIQVIERNAFDNLQS 256
Query: 343 LKELHLANNPLVLKLSHDWVPPFQ 366
L E++LA+N L L L HD P
Sbjct: 257 LVEINLAHNNLTL-LPHDLFTPLH 279
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 36.6 bits (83), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 57/125 (45%), Gaps = 8/125 (6%)
Query: 258 SFQHMVYLEHLRLSFNELEGGIPKFFGNMCSLITLNLSNNKLSGQLSEIIQNLSSGCLEN 317
+F+ + L L L +N+L+ F ++ L TL L+NN+L+ + +L+
Sbjct: 54 TFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLT------ 107
Query: 318 SLKSLYLENSLTGVISESFFSNISNLKELHLANNPL--VLKLSHDWVPPFQLIIISLSSC 375
L LYL + + F ++ LKEL L N L + + D + Q + +S +
Sbjct: 108 QLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQL 167
Query: 376 KIGPH 380
+ PH
Sbjct: 168 QSVPH 172
Score = 33.1 bits (74), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 42/82 (51%), Gaps = 7/82 (8%)
Query: 221 LSDNNLTS---SIYPWLPNISSIFISIDLGFNQLQGSIPESFQHMVYLEHLRLSFNELEG 277
L++N L S ++ L + ++ LG NQL+ F + L+ LRL+ N+L+
Sbjct: 90 LANNQLASLPLGVFDHLTQLDKLY----LGGNQLKSLPSGVFDRLTKLKELRLNTNQLQS 145
Query: 278 GIPKFFGNMCSLITLNLSNNKL 299
F + +L TL+LS N+L
Sbjct: 146 IPAGAFDKLTNLQTLSLSTNQL 167
Score = 33.1 bits (74), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 53/129 (41%), Gaps = 1/129 (0%)
Query: 485 SKLTYVDLSSNLLSGKLPDCWWTFDSLVILNLENNSFSGRIPDSMGFLQNIQTLSLHNNR 544
+KLT+++L N L + L L L NN + L + L L N+
Sbjct: 59 TKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQ 118
Query: 545 LTGELSSSFRNCSQLRLLDLGKNALYGEIPTWMGESLSNLIVLSLKSNKFHGKIPFQLCQ 604
L S F ++L+ L L N L IP + L+NL LSL +N+ +
Sbjct: 119 LKSLPSGVFDRLTKLKELRLNTNQLQ-SIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDR 177
Query: 605 LAFLQVLDL 613
L LQ + L
Sbjct: 178 LGKLQTITL 186
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 54/129 (41%), Gaps = 1/129 (0%)
Query: 490 VDLSSNLLSGKLPDCWWTFDSLVILNLENNSFSGRIPDSMGFLQNIQTLSLHNNRLTGEL 549
+DL S L+ + L LNL+ N L + TL L NN+L
Sbjct: 40 LDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLP 99
Query: 550 SSSFRNCSQLRLLDLGKNALYGEIPTWMGESLSNLIVLSLKSNKFHGKIPFQLCQLAFLQ 609
F + +QL L LG N L +P+ + + L+ L L L +N+ +L LQ
Sbjct: 100 LGVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQ 158
Query: 610 VLDLSLNNI 618
L LS N +
Sbjct: 159 TLSLSTNQL 167
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 36.6 bits (83), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 54/106 (50%), Gaps = 6/106 (5%)
Query: 244 IDLGFNQLQGSIPESFQHMVYLEHLRLSFNELEGGIPKFFGNMCSLITLNLSNNKLSGQL 303
++L N +Q ++F+H+ +LE L+LS N + F + SL TL L +N+L+
Sbjct: 40 LNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTTVP 99
Query: 304 SEIIQNLSSGCLENSLKSLYLENSLTGVISESFFSNISNLKELHLA 349
++ + LS L+ L+L N+ I F+ + +L+ L L
Sbjct: 100 TQAFEYLS------KLRELWLRNNPIESIPSYAFNRVPSLRRLDLG 139
Score = 33.1 bits (74), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 55/191 (28%), Positives = 76/191 (39%), Gaps = 16/191 (8%)
Query: 487 LTYVDLSSNLLSGKLPDCWWTFDSLVILNLENNSFSGRIPDSMGFLQNIQTLSLHNNRLT 546
L + LS NL+ + SL L L +N + + +L ++ L L NN +
Sbjct: 61 LEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNPIE 120
Query: 547 GELSSSFRNCSQLRLLDLGKNALYGEIPTWMGESLSNLIVLSLKSNKFHGKIPFQLCQLA 606
S +F LR LDLG+ I E L NL L+L IP L L
Sbjct: 121 SIPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGLVNLRYLNLGMCNL-KDIP-NLTALV 178
Query: 607 FLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKDKLMLTWKGSEREYRSTLGLVKS 666
L+ L+LS N + P F T++ KL L R+ +KS
Sbjct: 179 RLEELELSGNRLDLIRPGSFQGLTSL-----------RKLWLMHAQVATIERNAFDDLKS 227
Query: 667 LE---LSNNNL 674
LE LS+NNL
Sbjct: 228 LEELNLSHNNL 238
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 36.6 bits (83), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 54/105 (51%), Gaps = 6/105 (5%)
Query: 244 IDLGFNQLQGSIPESFQHMVYLEHLRLSFNELEGGIPKFFGNMCSLITLNLSNNKLSGQL 303
++L N +Q ++F+H+ +LE L+LS N + F + SL TL L +N+L+
Sbjct: 40 LNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTTVP 99
Query: 304 SEIIQNLSSGCLENSLKSLYLENSLTGVISESFFSNISNLKELHL 348
++ + LS L+ L+L N+ I F+ + +L+ L L
Sbjct: 100 TQAFEYLS------KLRELWLRNNPIESIPSYAFNRVPSLRRLDL 138
Score = 33.1 bits (74), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 55/191 (28%), Positives = 76/191 (39%), Gaps = 16/191 (8%)
Query: 487 LTYVDLSSNLLSGKLPDCWWTFDSLVILNLENNSFSGRIPDSMGFLQNIQTLSLHNNRLT 546
L + LS NL+ + SL L L +N + + +L ++ L L NN +
Sbjct: 61 LEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNPIE 120
Query: 547 GELSSSFRNCSQLRLLDLGKNALYGEIPTWMGESLSNLIVLSLKSNKFHGKIPFQLCQLA 606
S +F LR LDLG+ I E L NL L+L IP L L
Sbjct: 121 SIPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGLVNLRYLNLGMCNL-KDIP-NLTALV 178
Query: 607 FLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKDKLMLTWKGSEREYRSTLGLVKS 666
L+ L+LS N + P F T++ KL L R+ +KS
Sbjct: 179 RLEELELSGNRLDLIRPGSFQGLTSLR-----------KLWLMHAQVATIERNAFDDLKS 227
Query: 667 LE---LSNNNL 674
LE LS+NNL
Sbjct: 228 LEELNLSHNNL 238
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 36.2 bits (82), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 62/244 (25%), Positives = 100/244 (40%), Gaps = 28/244 (11%)
Query: 512 VILNLENNSFSGRIPDSMGFLQNIQTLSLHNNRLTGELSSSFRNCSQLRLLDLGKNALYG 571
+L+L+NN + L+N+ TL L NN+++ +F +L L L KN L
Sbjct: 55 ALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQL-K 113
Query: 572 EIPTWMGESLSNLIVLSLKSNKFHGKIPFQLCQLAFLQVLDLSLNNI--SGKIPKCFNNF 629
E+P M ++L L V + K + L Q+ V++L N + SG F
Sbjct: 114 ELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMI---VVELGTNPLKSSGIENGAFQGM 170
Query: 630 TAMTQERSSDPTIKDKLMLTWKGSEREYRSTL--GLVKS---LELSNNNLNGAVPEEIMD 684
++ R +D I +T+ GL S L L N + +
Sbjct: 171 KKLSYIRIADTNI----------------TTIPQGLPPSLTELHLDGNKITKVDAASLKG 214
Query: 685 LVGLVALNLSKNHLTGQISPKIGQLKSLDFLDLSRNQLVGGIPSSLSQLSGLSVMDLSYN 744
L L L LS N ++ + + L L L+ N+LV +P L+ + V+ L N
Sbjct: 215 LNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNN 273
Query: 745 NLSG 748
N+S
Sbjct: 274 NISA 277
Score = 35.8 bits (81), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 57/119 (47%), Gaps = 17/119 (14%)
Query: 241 FISIDLGFNQLQGSIPE--SFQHMVYLEHLRLS---FNELEGGIPKFFGNMCSLITLNLS 295
I ++LG N L+ S E +FQ M L ++R++ + G+P SL L+L
Sbjct: 147 MIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPP------SLTELHLD 200
Query: 296 NNKLSGQLSEIIQNLSSGCLENSLKSLYLENSLTGVISESFFSNISNLKELHLANNPLV 354
NK++ + ++ L N+L L L + + +N +L+ELHL NN LV
Sbjct: 201 GNKITKVDAASLKGL------NNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV 253
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 35.8 bits (81), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 57/119 (47%), Gaps = 17/119 (14%)
Query: 241 FISIDLGFNQLQGSIPE--SFQHMVYLEHLRLS---FNELEGGIPKFFGNMCSLITLNLS 295
I ++LG N L+ S E +FQ M L ++R++ + G+P SL L+L
Sbjct: 147 MIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPP------SLTELHLD 200
Query: 296 NNKLSGQLSEIIQNLSSGCLENSLKSLYLENSLTGVISESFFSNISNLKELHLANNPLV 354
NK++ + ++ L N+L L L + + +N +L+ELHL NN LV
Sbjct: 201 GNKITKVDAASLKGL------NNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV 253
Score = 35.8 bits (81), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 62/244 (25%), Positives = 100/244 (40%), Gaps = 28/244 (11%)
Query: 512 VILNLENNSFSGRIPDSMGFLQNIQTLSLHNNRLTGELSSSFRNCSQLRLLDLGKNALYG 571
+L+L+NN + L+N+ TL L NN+++ +F +L L L KN L
Sbjct: 55 ALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQL-K 113
Query: 572 EIPTWMGESLSNLIVLSLKSNKFHGKIPFQLCQLAFLQVLDLSLNNI--SGKIPKCFNNF 629
E+P M ++L L V + K + L Q+ V++L N + SG F
Sbjct: 114 ELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMI---VVELGTNPLKSSGIENGAFQGM 170
Query: 630 TAMTQERSSDPTIKDKLMLTWKGSEREYRSTL--GLVKS---LELSNNNLNGAVPEEIMD 684
++ R +D I +T+ GL S L L N + +
Sbjct: 171 KKLSYIRIADTNI----------------TTIPQGLPPSLTELHLDGNKITKVDAASLKG 214
Query: 685 LVGLVALNLSKNHLTGQISPKIGQLKSLDFLDLSRNQLVGGIPSSLSQLSGLSVMDLSYN 744
L L L LS N ++ + + L L L+ N+LV +P L+ + V+ L N
Sbjct: 215 LNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNN 273
Query: 745 NLSG 748
N+S
Sbjct: 274 NISA 277
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 52/113 (46%), Gaps = 12/113 (10%)
Query: 244 IDLGFNQLQGSIPES-FQHMVYLEHLRLSFNELEGGIPKFFGNMCSLITLNLSNNKLSGQ 302
+DL N L+ S+P F + L L L N+L+ F + SL LNLS N+L
Sbjct: 33 LDLETNSLK-SLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQL--- 88
Query: 303 LSEIIQNLSSGCLEN--SLKSLYLENSLTGVISESFFSNISNLKELHLANNPL 353
Q+L +G + LK L L + + + F ++ LK+L L N L
Sbjct: 89 -----QSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQL 136
>pdb|2V9S|A Chain A, Second Lrr Domain Of Human Slit2
pdb|2V9S|B Chain B, Second Lrr Domain Of Human Slit2
pdb|2V9S|C Chain C, Second Lrr Domain Of Human Slit2
pdb|2V9S|D Chain D, Second Lrr Domain Of Human Slit2
Length = 220
Score = 35.4 bits (80), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 58/122 (47%), Gaps = 6/122 (4%)
Query: 244 IDLGFNQLQGSIPESFQHMVYLEHLRLSFNELEGGIPKFFGNMCSLITLNLSNNKLSGQL 303
IDL NQ+ P++FQ + L L L N++ F + SL L L+ NK++
Sbjct: 61 IDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINXLR 120
Query: 304 SEIIQNLSSGCLENSLKSLYLENSLTGVISESFFSNISNLKELHLANNPLVLKLSHDWVP 363
+ Q+L ++L L L ++ I++ FS + ++ +HLA NP + W+
Sbjct: 121 VDAFQDL------HNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICDCHLKWLA 174
Query: 364 PF 365
+
Sbjct: 175 DY 176
Score = 33.1 bits (74), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 58/130 (44%), Gaps = 1/130 (0%)
Query: 487 LTYVDLSSNLLSGKLPDCWWTFDSLVILNLENNSFSGRIPDSMGFLQNIQTLSLHNNRLT 546
+T + L N + P + + L ++L NN S PD+ L+++ +L L+ N++T
Sbjct: 34 ITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT 93
Query: 547 GELSSSFRNCSQLRLLDLGKNALYGEIPTWMGESLSNLIVLSLKSNKFHGKIPFQLCQLA 606
S F L+LL L N + + + L NL +LSL NK L
Sbjct: 94 ELPKSLFEGLFSLQLLLLNANKI-NXLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLR 152
Query: 607 FLQVLDLSLN 616
+Q + L+ N
Sbjct: 153 AIQTMHLAQN 162
>pdb|2V9T|B Chain B, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 220
Score = 35.4 bits (80), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 58/122 (47%), Gaps = 6/122 (4%)
Query: 244 IDLGFNQLQGSIPESFQHMVYLEHLRLSFNELEGGIPKFFGNMCSLITLNLSNNKLSGQL 303
IDL NQ+ P++FQ + L L L N++ F + SL L L+ NK++
Sbjct: 61 IDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLR 120
Query: 304 SEIIQNLSSGCLENSLKSLYLENSLTGVISESFFSNISNLKELHLANNPLVLKLSHDWVP 363
+ Q+L ++L L L ++ I++ FS + ++ +HLA NP + W+
Sbjct: 121 VDAFQDL------HNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICDCHLKWLA 174
Query: 364 PF 365
+
Sbjct: 175 DY 176
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 58/130 (44%), Gaps = 1/130 (0%)
Query: 487 LTYVDLSSNLLSGKLPDCWWTFDSLVILNLENNSFSGRIPDSMGFLQNIQTLSLHNNRLT 546
+T + L N + P + + L ++L NN S PD+ L+++ +L L+ N++T
Sbjct: 34 ITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT 93
Query: 547 GELSSSFRNCSQLRLLDLGKNALYGEIPTWMGESLSNLIVLSLKSNKFHGKIPFQLCQLA 606
S F L+LL L N + + + L NL +LSL NK L
Sbjct: 94 ELPKSLFEGLFSLQLLLLNANKI-NCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLR 152
Query: 607 FLQVLDLSLN 616
+Q + L+ N
Sbjct: 153 AIQTMHLAQN 162
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 35.0 bits (79), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 66/151 (43%), Gaps = 17/151 (11%)
Query: 611 LDLSLNNISGKIPKCFNNFTAMT---QERSSDPTIKDKLMLTWKGSEREYRSTLGLVKSL 667
+DLS N + F+NF+ + R TI+DK W G L + +L
Sbjct: 37 IDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDK---AWHG--------LHHLSNL 85
Query: 668 ELSNNNLNGAVPEEIMDLVGLVALNLSKNHLTGQISPKIGQLKSLDFLDLSRNQLVG-GI 726
L+ N + P L L L + L S IGQL +L L+++ N + +
Sbjct: 86 ILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKL 145
Query: 727 PSSLSQLSGLSVMDLSYNNLSGKIPTVTQLQ 757
P+ S L+ L +DLSYN + + TV LQ
Sbjct: 146 PAYFSNLTNLVHVDLSYNYI--QTITVNDLQ 174
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 35/64 (54%), Gaps = 4/64 (6%)
Query: 683 MDLVGLVALNLSKNHLTGQISPKIGQLKSLDFLDLSRNQLVGGIPSSLSQL--SGLSVMD 740
+DL L +L L+ N G IS K L SL +LDLSRN L S S L + L +D
Sbjct: 325 LDLPFLKSLTLTMN--KGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLD 382
Query: 741 LSYN 744
LS+N
Sbjct: 383 LSFN 386
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 35.0 bits (79), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 66/151 (43%), Gaps = 17/151 (11%)
Query: 611 LDLSLNNISGKIPKCFNNFTAMT---QERSSDPTIKDKLMLTWKGSEREYRSTLGLVKSL 667
+DLS N + F+NF+ + R TI+DK W G L + +L
Sbjct: 32 IDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDK---AWHG--------LHHLSNL 80
Query: 668 ELSNNNLNGAVPEEIMDLVGLVALNLSKNHLTGQISPKIGQLKSLDFLDLSRNQLVG-GI 726
L+ N + P L L L + L S IGQL +L L+++ N + +
Sbjct: 81 ILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKL 140
Query: 727 PSSLSQLSGLSVMDLSYNNLSGKIPTVTQLQ 757
P+ S L+ L +DLSYN + + TV LQ
Sbjct: 141 PAYFSNLTNLVHVDLSYNYI--QTITVNDLQ 169
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 35/64 (54%), Gaps = 4/64 (6%)
Query: 683 MDLVGLVALNLSKNHLTGQISPKIGQLKSLDFLDLSRNQLVGGIPSSLSQL--SGLSVMD 740
+DL L +L L+ N G IS K L SL +LDLSRN L S S L + L +D
Sbjct: 320 LDLPFLKSLTLTMN--KGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLD 377
Query: 741 LSYN 744
LS+N
Sbjct: 378 LSFN 381
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 34.3 bits (77), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 38/78 (48%)
Query: 664 VKSLELSNNNLNGAVPEEIMDLVGLVALNLSKNHLTGQISPKIGQLKSLDFLDLSRNQLV 723
VKSL+LSNN + ++ V L AL L+ N + L SL+ LDLS N L
Sbjct: 54 VKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS 113
Query: 724 GGIPSSLSQLSGLSVMDL 741
S LS L+ ++L
Sbjct: 114 NLSSSWFKPLSSLTFLNL 131
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 33.9 bits (76), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 38/78 (48%)
Query: 664 VKSLELSNNNLNGAVPEEIMDLVGLVALNLSKNHLTGQISPKIGQLKSLDFLDLSRNQLV 723
VKSL+LSNN + ++ V L AL L+ N + L SL+ LDLS N L
Sbjct: 28 VKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS 87
Query: 724 GGIPSSLSQLSGLSVMDL 741
S LS L+ ++L
Sbjct: 88 NLSSSWFKPLSSLTFLNL 105
>pdb|2GHP|A Chain A, Crystal Structure Of The N-Terminal 3 Rna Binding Domains
Of The Yeast Splicing Factor Prp24
pdb|2GHP|B Chain B, Crystal Structure Of The N-Terminal 3 Rna Binding Domains
Of The Yeast Splicing Factor Prp24
pdb|2GHP|C Chain C, Crystal Structure Of The N-Terminal 3 Rna Binding Domains
Of The Yeast Splicing Factor Prp24
pdb|2GHP|D Chain D, Crystal Structure Of The N-Terminal 3 Rna Binding Domains
Of The Yeast Splicing Factor Prp24
pdb|2GHP|E Chain E, Crystal Structure Of The N-Terminal 3 Rna Binding Domains
Of The Yeast Splicing Factor Prp24
pdb|2GHP|F Chain F, Crystal Structure Of The N-Terminal 3 Rna Binding Domains
Of The Yeast Splicing Factor Prp24
pdb|2GHP|G Chain G, Crystal Structure Of The N-Terminal 3 Rna Binding Domains
Of The Yeast Splicing Factor Prp24
pdb|2GHP|H Chain H, Crystal Structure Of The N-Terminal 3 Rna Binding Domains
Of The Yeast Splicing Factor Prp24
Length = 292
Score = 33.5 bits (75), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 38/70 (54%), Gaps = 2/70 (2%)
Query: 358 SHDWVPPFQLIIISLSSCKI-GPHFPKWLQTQNQIELL-DISNTGISDTIPDWFWNLSNK 415
+H V ++I+ L+ C + +FP +N +LL DI+ +S +P +N S +
Sbjct: 101 THKVVGQNEIIVSHLTECTLWXTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRR 160
Query: 416 FSFLDLASNQ 425
F+++D+ S +
Sbjct: 161 FAYIDVTSKE 170
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 33.5 bits (75), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 50/166 (30%), Positives = 70/166 (42%), Gaps = 28/166 (16%)
Query: 221 LSDNNLTSSIYPWLPNISSIFISIDLGFNQLQGSIPESFQHMVYLEHLRLSFNELEGGIP 280
LS N L S P L +D+ FN+L + + + L+ L L NEL+ P
Sbjct: 84 LSHNQLQS--LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPP 141
Query: 281 KFFGNMCSLITLNLSNNKLSGQLSEIIQNLSSGCLENSLKSLYLENSLTGVISESFFSNI 340
L L+L+NN QL+E+ L +G LEN L ENSL + F S++
Sbjct: 142 GLLTPTPKLEKLSLANN----QLTELPAGLLNG-LENLDTLLLQENSLYTIPKGFFGSHL 196
Query: 341 SNLKELHLANNPLVLKLSHDWVPPFQLIIISLSSCKIGPHFPKWLQ 386
LH NP W L +C+I +F +WLQ
Sbjct: 197 LPFAFLH--GNP--------W----------LCNCEIL-YFRRWLQ 221
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 33.1 bits (74), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 50/166 (30%), Positives = 70/166 (42%), Gaps = 28/166 (16%)
Query: 221 LSDNNLTSSIYPWLPNISSIFISIDLGFNQLQGSIPESFQHMVYLEHLRLSFNELEGGIP 280
LS N L S P L +D+ FN+L + + + L+ L L NEL+ P
Sbjct: 84 LSHNQLQS--LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPP 141
Query: 281 KFFGNMCSLITLNLSNNKLSGQLSEIIQNLSSGCLENSLKSLYLENSLTGVISESFFSNI 340
L L+L+NN QL+E+ L +G LEN L ENSL + F S++
Sbjct: 142 GLLTPTPKLEKLSLANN----QLTELPAGLLNG-LENLDTLLLQENSLYTIPKGFFGSHL 196
Query: 341 SNLKELHLANNPLVLKLSHDWVPPFQLIIISLSSCKIGPHFPKWLQ 386
LH NP W L +C+I +F +WLQ
Sbjct: 197 LPFAFLH--GNP--------W----------LCNCEIL-YFRRWLQ 221
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 33.1 bits (74), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 50/166 (30%), Positives = 70/166 (42%), Gaps = 28/166 (16%)
Query: 221 LSDNNLTSSIYPWLPNISSIFISIDLGFNQLQGSIPESFQHMVYLEHLRLSFNELEGGIP 280
LS N L S P L +D+ FN+L + + + L+ L L NEL+ P
Sbjct: 84 LSHNQLQS--LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPP 141
Query: 281 KFFGNMCSLITLNLSNNKLSGQLSEIIQNLSSGCLENSLKSLYLENSLTGVISESFFSNI 340
L L+L+NN QL+E+ L +G LEN L ENSL + F S++
Sbjct: 142 GLLTPTPKLEKLSLANN----QLTELPAGLLNG-LENLDTLLLQENSLYTIPKGFFGSHL 196
Query: 341 SNLKELHLANNPLVLKLSHDWVPPFQLIIISLSSCKIGPHFPKWLQ 386
LH NP W L +C+I +F +WLQ
Sbjct: 197 LPFAFLH--GNP--------W----------LCNCEIL-YFRRWLQ 221
>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain
Length = 390
Score = 32.7 bits (73), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 67/266 (25%), Positives = 109/266 (40%), Gaps = 36/266 (13%)
Query: 500 KLPDCWW-TFDSLVILNLENNSFSGRIPDSMGFLQNIQTLSLHNNRLTGELSSSFRNCSQ 558
KLP +F + +LNL + + + IQ L + N + F+N
Sbjct: 59 KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPL 118
Query: 559 LRLLDLGKNAL-------YGEIPTWMGESLSNLIVLSLKSNKFHGKIPFQLCQLA--FLQ 609
L +L L +N L + P S+SN + ++ + F Q QL+ L
Sbjct: 119 LTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT 178
Query: 610 VLDLSLNNISGKIPKCFN-NFTAMTQERSSDPTIKDKLMLTWKGSEREYRSTLGLVKS-- 666
+DLSL IP F+ N + + P ++L S G V
Sbjct: 179 HVDLSL------IPSLFHANVSYNLLSTLAIPIAVEEL----DASHNSINVVRGPVNVEL 228
Query: 667 --LELSNNNLNGAVPEEIMDLVGLVALNLSKNHLTGQISPKIGQLKSLDFLDLSRNQLVG 724
L+L +NNL +++ GLV ++LS N L + +++ L+ L +S N+LV
Sbjct: 229 TILKLQHNNLTDTA--WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA 286
Query: 725 ----GIPSSLSQLSGLSVMDLSYNNL 746
G P + L V+DLS+N+L
Sbjct: 287 LNLYGQP-----IPTLKVLDLSHNHL 307
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 46/97 (47%), Gaps = 3/97 (3%)
Query: 246 LGFNQLQGSIPESFQHMVYLEHLRLSFNELEGGIPKFFGNMCSLITLNLSNNKLSGQLSE 305
+GFN ++ P FQ++ L L L N+L F N L TL++SNN L +
Sbjct: 100 MGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDD 159
Query: 306 IIQNLSSGCLEN-SLKSLYLENSLTGVISESFFSNIS 341
Q ++ L+N L S L + +I F +N+S
Sbjct: 160 TFQ--ATTSLQNLQLSSNRLTHVDLSLIPSLFHANVS 194
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 41/80 (51%), Gaps = 6/80 (7%)
Query: 221 LSDNNLTSSIYPWLPNISSIFISIDLGFNQLQGSIPESFQHMVYLEHLRLSFNELEGGIP 280
L NNLT + WL N + + +DL +N+L+ + F M LE L +S N L
Sbjct: 233 LQHNNLTDT--AWLLNYPGL-VEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVAL-- 287
Query: 281 KFFGN-MCSLITLNLSNNKL 299
+G + +L L+LS+N L
Sbjct: 288 NLYGQPIPTLKVLDLSHNHL 307
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 32.7 bits (73), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 51/108 (47%), Gaps = 12/108 (11%)
Query: 249 NQLQGSIPES-FQHMVYLEHLRLSFNELEGGIPKFFGNMCSLITLNLSNNKLSGQLSEII 307
NQLQ S+P F + L+ L L N+L+ F + +L LNL++N+L
Sbjct: 95 NQLQ-SLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQL-------- 145
Query: 308 QNLSSGCLEN--SLKSLYLENSLTGVISESFFSNISNLKELHLANNPL 353
Q+L G + +L L L + + E F ++ LK+L L N L
Sbjct: 146 QSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQL 193
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 47/98 (47%), Gaps = 6/98 (6%)
Query: 667 LELSNNNLNGAVPEEIMD-LVGLVALNLSKNHLTGQISPKIGQLKSLDFLDLSRNQLVGG 725
L L+ N L ++P + D L L L L +N L +L +L +L+L+ NQL
Sbjct: 90 LILTGNQLQ-SLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSL 148
Query: 726 IPSSLSQLSGLSVMDLSYNNLS----GKIPTVTQLQSF 759
+L+ L+ +DLSYN L G +TQL+
Sbjct: 149 PKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDL 186
Score = 30.8 bits (68), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 43/89 (48%), Gaps = 9/89 (10%)
Query: 241 FISIDLGFNQLQGSIPES-FQHMVYLEHLRLSFNELEGGIPKFFGNMCSLITLNLSNNKL 299
+DL +NQLQ S+PE F + L+ LRL N+L+ F + SL + L +N
Sbjct: 159 LTELDLSYNQLQ-SLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPW 217
Query: 300 S------GQLSEIIQNLSSGCLENSLKSL 322
LSE I N SG + NS S+
Sbjct: 218 DCTCPGIRYLSEWI-NKHSGVVRNSAGSV 245
Score = 30.4 bits (67), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 50/117 (42%), Gaps = 11/117 (9%)
Query: 664 VKSLELSNNNLNGAVPEEIMD-LVGLVALNLSKNHLTGQISPKIGQLKSLDFLDLSRNQL 722
+K L L N L ++P+ + D L L LNL+ N L +L +L LDLS NQL
Sbjct: 111 LKELVLVENQLQ-SLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQL 169
Query: 723 VG---GIPSSLSQLSGLSVMDLSYNNLSGKIP--TVTQLQSFNDTVYAGNPELCGLP 774
G+ L+QL L + Y N +P +L S NP C P
Sbjct: 170 QSLPEGVFDKLTQLKDLRL----YQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP 222
Score = 30.0 bits (66), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 46/97 (47%), Gaps = 9/97 (9%)
Query: 220 VLSDNNLTS---SIYPWLPNISSIFISIDLGFNQLQGSIPES-FQHMVYLEHLRLSFNEL 275
VL +N L S ++ L N++ + +L NQLQ S+P+ F + L L LS+N+L
Sbjct: 115 VLVENQLQSLPDGVFDKLTNLTYL----NLAHNQLQ-SLPKGVFDKLTNLTELDLSYNQL 169
Query: 276 EGGIPKFFGNMCSLITLNLSNNKLSGQLSEIIQNLSS 312
+ F + L L L N+L + L+S
Sbjct: 170 QSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTS 206
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 32.7 bits (73), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 50/166 (30%), Positives = 70/166 (42%), Gaps = 28/166 (16%)
Query: 221 LSDNNLTSSIYPWLPNISSIFISIDLGFNQLQGSIPESFQHMVYLEHLRLSFNELEGGIP 280
LS N L S P L +D+ FN+L + + + L+ L L NEL+ P
Sbjct: 84 LSHNQLQS--LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPP 141
Query: 281 KFFGNMCSLITLNLSNNKLSGQLSEIIQNLSSGCLENSLKSLYLENSLTGVISESFFSNI 340
L L+L+NN QL+E+ L +G LEN L ENSL + F S++
Sbjct: 142 GLLTPTPKLEKLSLANN----QLTELPAGLLNG-LENLDTLLLQENSLYTIPKGFFGSHL 196
Query: 341 SNLKELHLANNPLVLKLSHDWVPPFQLIIISLSSCKIGPHFPKWLQ 386
LH NP W L +C+I +F +WLQ
Sbjct: 197 LPFAFLH--GNP--------W----------LCNCEIL-YFRRWLQ 221
>pdb|4ECO|A Chain A, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
pdb|4ECO|B Chain B, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
Length = 636
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 40/75 (53%), Gaps = 8/75 (10%)
Query: 244 IDLGFNQLQG-SIPESFQHMVYLEHLRLSFNELEGGIPKFFGNMCSLITLNLSNNKLSG- 301
I +G+N L+ + S Q L L +N+LEG +P FG+ L +LNL+ N+++
Sbjct: 310 IYIGYNNLKTFPVETSLQKXKKLGXLECLYNQLEGKLPA-FGSEIKLASLNLAYNQITEI 368
Query: 302 -----QLSEIIQNLS 311
+E ++NLS
Sbjct: 369 PANFCGFTEQVENLS 383
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 77/318 (24%), Positives = 130/318 (40%), Gaps = 56/318 (17%)
Query: 479 LCSISGSK---LTYVDLSSNLLSGKL-PDCWWTFDSLVILNLENNSFSGRIPDSMGF--L 532
LC IS S LT++ + N +L C ++L L+L ++ ++ L
Sbjct: 316 LCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNL 375
Query: 533 QNIQTLSLHNNRLTGELSSSFRNCSQLRLLDLGKNALYGEIPTWMGESLSNLIVLSLKSN 592
++Q+L+L N + +F+ C QL LLDL + L V +S
Sbjct: 376 SHLQSLNLSYNEPLSLKTEAFKECPQLELLDLA---------------FTRLKVKDAQS- 419
Query: 593 KFHGKIPFQLCQLAFLQVLDLSLNNISGKIPKCFNNFTAMTQ---ERSSDPTIKDKLMLT 649
PFQ L L+VL+LS + + + F+ A+ + + P
Sbjct: 420 ------PFQ--NLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFP--------- 462
Query: 650 WKGSEREYRS--TLGLVKSLELSNNNLNGAVPEEIMDLVGLVALNLSKNHLTGQISPKIG 707
KG+ ++ S TLG ++ L LS +L+ L + ++LS N LT +
Sbjct: 463 -KGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALS 521
Query: 708 QLKSLDFLDLSRNQLVGGIPSSLSQLSGLSVMDLSYNNLSGKIPTV----------TQLQ 757
LK + +L+L+ N + +PS L LS ++L N L + +L+
Sbjct: 522 HLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCSNIYFLEWYKENMQKLE 580
Query: 758 SFNDTVYAGNPELCGLPL 775
DT+ P L G+ L
Sbjct: 581 DTEDTLCENPPLLRGVRL 598
>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|B Chain B, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|C Chain C, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|D Chain D, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
Length = 174
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 38/79 (48%), Gaps = 1/79 (1%)
Query: 516 LENNSFSGRIPDSMGFLQNIQTLSLHNNRLTGELSSSFRNCSQLRLLDLGKNALYGEIPT 575
L NN + P L N+Q L ++N+LT + F +QL LDL N L IP
Sbjct: 40 LNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHL-KSIPR 98
Query: 576 WMGESLSNLIVLSLKSNKF 594
++L +L + L +N +
Sbjct: 99 GAFDNLKSLTHIYLYNNPW 117
Score = 30.4 bits (67), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 35/82 (42%), Gaps = 6/82 (7%)
Query: 246 LGFNQLQGSIPESFQHMVYLEHLRLSFNELEGGIPKFFGNMCSLITLNLSNNKLSGQLSE 305
L NQ+ P F H+V L+ L + N+L F + L L+L++N L
Sbjct: 40 LNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRG 99
Query: 306 IIQNLSSGCLENSLKSLYLENS 327
NL SL +YL N+
Sbjct: 100 AFDNLK------SLTHIYLYNN 115
>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
pdb|2XOT|B Chain B, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
Length = 361
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 42/84 (50%)
Query: 664 VKSLELSNNNLNGAVPEEIMDLVGLVALNLSKNHLTGQISPKIGQLKSLDFLDLSRNQLV 723
+ SL LS+N+LN E + + L L+LS NHL L++L+ L L N +V
Sbjct: 66 LHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIV 125
Query: 724 GGIPSSLSQLSGLSVMDLSYNNLS 747
++ ++ L + LS N +S
Sbjct: 126 VVDRNAFEDMAQLQKLYLSQNQIS 149
Score = 30.8 bits (68), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 39/80 (48%), Gaps = 2/80 (2%)
Query: 667 LELSNNNLNGAVPEEI-MDLVGLVALNLSKNHLTGQISPKIGQLKSLDFLDLSRNQLVGG 725
L+LS+NNL+ E L L +L LS NHL S + +L +LDLS N L
Sbjct: 44 LDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTL 103
Query: 726 IPSSLSQLSGLSVMDLSYNN 745
S L L V+ L YNN
Sbjct: 104 DEFLFSDLQALEVL-LLYNN 122
Score = 29.3 bits (64), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 54/121 (44%), Gaps = 12/121 (9%)
Query: 664 VKSLELSNNNLNGAVPEEIMDLVGLVALNLSKNHLTGQISPKIGQLKSLDFLDLSRNQLV 723
++ L+LS+N+L+ DL L L L NH+ + L L LS+NQ +
Sbjct: 90 LRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQ-I 148
Query: 724 GGIPSSL----SQLSGLSVMDLSYNNLSGKIPTVTQLQSFNDTVYAG-----NPELCGLP 774
P L ++L L ++DLS N L K+P +T LQ V G NP C
Sbjct: 149 SRFPVELIKDGNKLPKLMLLDLSSNKLK-KLP-LTDLQKLPAWVKNGLYLHNNPLECDCK 206
Query: 775 L 775
L
Sbjct: 207 L 207
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Query: 318 SLKSLYLENSLTGVISESFFSNISNLKELHLANNPLVLKLSHDWVPPFQLII 369
SLK L++ NS +I + F +++L EL+LA+N L L HD P + ++
Sbjct: 243 SLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLS-SLPHDLFTPLRYLV 293
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 50/106 (47%), Gaps = 6/106 (5%)
Query: 244 IDLGFNQLQGSIPESFQHMVYLEHLRLSFNELEGGIPKFFGNMCSLITLNLSNNKLSGQL 303
++L N +Q ++F+H+ +LE L+L N + F + SL TL L +N L+
Sbjct: 80 LNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIP 139
Query: 304 SEIIQNLSSGCLENSLKSLYLENSLTGVISESFFSNISNLKELHLA 349
S + LS L+ L+L N+ I F+ + +L L L
Sbjct: 140 SGAFEYLS------KLRELWLRNNPIESIPSYAFNRVPSLMRLDLG 179
>pdb|3OJA|B Chain B, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 597
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 41/80 (51%), Gaps = 6/80 (7%)
Query: 221 LSDNNLTSSIYPWLPNISSIFISIDLGFNQLQGSIPESFQHMVYLEHLRLSFNELEGGIP 280
L NNLT + WL N + + +DL +N+L+ + F M LE L +S N L
Sbjct: 239 LQHNNLTDT--AWLLNYPGL-VEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVAL-- 293
Query: 281 KFFGN-MCSLITLNLSNNKL 299
+G + +L L+LS+N L
Sbjct: 294 NLYGQPIPTLKVLDLSHNHL 313
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 50/102 (49%), Gaps = 13/102 (12%)
Query: 246 LGFNQLQGSIPESFQHMVYLEHLRLSFNELEGGIPK-FFGNMCSLITLNLSNNKLSGQLS 304
+GFN ++ P FQ++ L L L N+L +P+ F N L TL++SNN L
Sbjct: 106 MGFNAIRYLPPHVFQNVPLLTVLVLERNDL-SSLPRGIFHNTPKLTTLSMSNNNLERIED 164
Query: 305 EIIQNLSSGCLENSLKSLYL-ENSLTGV----ISESFFSNIS 341
+ Q + SL++L L N LT V I F +N+S
Sbjct: 165 DTFQATT------SLQNLQLSSNRLTHVDLSLIPSLFHANVS 200
Score = 30.8 bits (68), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 45/84 (53%), Gaps = 11/84 (13%)
Query: 667 LELSNNNLNGAVPEEIMDLVGLVALNLSKNHLTGQISPKIGQLKSLDFLDLSRNQLVG-- 724
L+L +NNL +++ GLV ++LS N L + +++ L+ L +S N+LV
Sbjct: 237 LKLQHNNLTDTA--WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALN 294
Query: 725 --GIPSSLSQLSGLSVMDLSYNNL 746
G P + L V+DLS+N+L
Sbjct: 295 LYGQP-----IPTLKVLDLSHNHL 313
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 55/119 (46%), Gaps = 2/119 (1%)
Query: 482 ISGSKLTYVDLSSNLLSGKLPDCWWTFDSLVILNLENNSFSGR-IPDSMGFLQNIQTLSL 540
+S L Y+D+S + SL +L + NSF +PD L+N+ L L
Sbjct: 418 LSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDL 477
Query: 541 HNNRLTGELSSSFRNCSQLRLLDLGKNALYGEIPTWMGESLSNLIVLSLKSNKFHGKIP 599
+L ++F + S L++L++ N L +P + + L++L + L +N + P
Sbjct: 478 SQCQLEQLSPTAFNSLSSLQVLNMASNQL-KSVPDGIFDRLTSLQKIWLHTNPWDCSCP 535
>pdb|2GO9|A Chain A, Rrm Domains 1 And 2 Of Prp24 From S. Cerevisiae
Length = 161
Score = 31.6 bits (70), Expect = 2.0, Method: Composition-based stats.
Identities = 19/70 (27%), Positives = 38/70 (54%), Gaps = 2/70 (2%)
Query: 358 SHDWVPPFQLIIISLSSCKIG-PHFPKWLQTQNQIELL-DISNTGISDTIPDWFWNLSNK 415
+H V ++I+ L+ C + +FP +N +LL DI+ +S +P +N S +
Sbjct: 64 THKVVGQNEIIVSHLTECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRR 123
Query: 416 FSFLDLASNQ 425
F+++D+ S +
Sbjct: 124 FAYIDVTSKE 133
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 31.6 bits (70), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 65/146 (44%), Gaps = 27/146 (18%)
Query: 514 LNLENNSFSGRIPDSMGFLQNIQTLSLHNNRLTGELSSSFRNCSQ---LRLLDLGKNAL- 569
L+ NN + + ++ G L ++TL L N+L ELS +Q L+ LD+ +N++
Sbjct: 329 LDFSNNLLTDTVFENCGHLTELETLILQMNQL-KELSKIAEMTTQMKSLQQLDISQNSVS 387
Query: 570 YGEIP---TWMGESLS------------------NLIVLSLKSNKFHGKIPFQLCQLAFL 608
Y E +W LS + VL L SNK IP Q+ +L L
Sbjct: 388 YDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSNKIKS-IPKQVVKLEAL 446
Query: 609 QVLDLSLNNISGKIPKCFNNFTAMTQ 634
Q L+++ N + F+ T++ +
Sbjct: 447 QELNVASNQLKSVPDGIFDRLTSLQK 472
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 31.2 bits (69), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 52/117 (44%), Gaps = 9/117 (7%)
Query: 667 LELSNNNLNGAVPEEIMDLVGLVALNLSKNHLTGQISPKIG---QLKSLDFLDLSRNQLV 723
L L+ N+L +P EI +L L L+LS N LT + ++G QLK F D +V
Sbjct: 252 LYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLTS-LPAELGSCFQLKYFYFFD----NMV 305
Query: 724 GGIPSSLSQLSGLSVMDLSYNNLSGKIPTVTQLQSFNDTVYAGNPELCGLPLPNKCR 780
+P L L + + N L + + +S ++ +PLP++ R
Sbjct: 306 TTLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPHERR 362
>pdb|3G3B|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
Length = 170
Score = 30.8 bits (68), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
Query: 530 GFLQNIQTLSLHNNRLTGELSSSFRNCSQLRLLDLGKNALYGEIPTWMGESLSNLIVLSL 589
G Q L L++NR+T F +QL LDL N L +P + + L+ L LSL
Sbjct: 27 GIPTTTQVLYLYDNRITKLEPGVFDRLTQLTRLDLDNNQL-TVLPAGVFDKLTQLTQLSL 85
Query: 590 KSNKF 594
N+
Sbjct: 86 NDNQL 90
Score = 30.8 bits (68), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 47/98 (47%), Gaps = 12/98 (12%)
Query: 255 IPESFQHMVYLEHLRLSFNELEGGIPKFFGNMCSLITLNLSNNKLSGQLSEIIQNLSSGC 314
IP + Q ++YL R++ +LE G+ F + L L+L NN+L+ + + L+
Sbjct: 28 IPTTTQ-VLYLYDNRIT--KLEPGV---FDRLTQLTRLDLDNNQLTVLPAGVFDKLTQ-- 79
Query: 315 LENSLKSLYLENSLTGVISESFFSNISNLKELHLANNP 352
L L L ++ I F N+ +L + L NNP
Sbjct: 80 ----LTQLSLNDNQLKSIPRGAFDNLRSLTHIWLLNNP 113
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 30.8 bits (68), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 49/166 (29%), Positives = 69/166 (41%), Gaps = 28/166 (16%)
Query: 221 LSDNNLTSSIYPWLPNISSIFISIDLGFNQLQGSIPESFQHMVYLEHLRLSFNELEGGIP 280
LS N L S P L +D+ FN+L + + + L+ L L NEL+ P
Sbjct: 85 LSHNQLQS--LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPP 142
Query: 281 KFFGNMCSLITLNLSNNKLSGQLSEIIQNLSSGCLENSLKSLYLENSLTGVISESFFSNI 340
L L+L+NN L+E+ L +G LEN L ENSL + F S++
Sbjct: 143 GLLTPTPKLEKLSLANN----NLTELPAGLLNG-LENLDTLLLQENSLYTIPKGFFGSHL 197
Query: 341 SNLKELHLANNPLVLKLSHDWVPPFQLIIISLSSCKIGPHFPKWLQ 386
LH NP W L +C+I +F +WLQ
Sbjct: 198 LPFAFLH--GNP--------W----------LCNCEIL-YFRRWLQ 222
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 30.8 bits (68), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 49/166 (29%), Positives = 69/166 (41%), Gaps = 28/166 (16%)
Query: 221 LSDNNLTSSIYPWLPNISSIFISIDLGFNQLQGSIPESFQHMVYLEHLRLSFNELEGGIP 280
LS N L S P L +D+ FN+L + + + L+ L L NEL+ P
Sbjct: 84 LSHNQLQS--LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPP 141
Query: 281 KFFGNMCSLITLNLSNNKLSGQLSEIIQNLSSGCLENSLKSLYLENSLTGVISESFFSNI 340
L L+L+NN L+E+ L +G LEN L ENSL + F S++
Sbjct: 142 GLLTPTPKLEKLSLANN----NLTELPAGLLNG-LENLDTLLLQENSLYTIPKGFFGSHL 196
Query: 341 SNLKELHLANNPLVLKLSHDWVPPFQLIIISLSSCKIGPHFPKWLQ 386
LH NP W L +C+I +F +WLQ
Sbjct: 197 LPFAFLH--GNP--------W----------LCNCEIL-YFRRWLQ 221
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 30.8 bits (68), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 49/166 (29%), Positives = 69/166 (41%), Gaps = 28/166 (16%)
Query: 221 LSDNNLTSSIYPWLPNISSIFISIDLGFNQLQGSIPESFQHMVYLEHLRLSFNELEGGIP 280
LS N L S P L +D+ FN+L + + + L+ L L NEL+ P
Sbjct: 84 LSHNQLQS--LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPP 141
Query: 281 KFFGNMCSLITLNLSNNKLSGQLSEIIQNLSSGCLENSLKSLYLENSLTGVISESFFSNI 340
L L+L+NN L+E+ L +G LEN L ENSL + F S++
Sbjct: 142 GLLTPTPKLEKLSLANN----DLTELPAGLLNG-LENLDTLLLQENSLYTIPKGFFGSHL 196
Query: 341 SNLKELHLANNPLVLKLSHDWVPPFQLIIISLSSCKIGPHFPKWLQ 386
LH NP W L +C+I +F +WLQ
Sbjct: 197 LPFAFLH--GNP--------W----------LCNCEIL-YFRRWLQ 221
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 30.8 bits (68), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 49/166 (29%), Positives = 69/166 (41%), Gaps = 28/166 (16%)
Query: 221 LSDNNLTSSIYPWLPNISSIFISIDLGFNQLQGSIPESFQHMVYLEHLRLSFNELEGGIP 280
LS N L S P L +D+ FN+L + + + L+ L L NEL+ P
Sbjct: 84 LSHNQLQS--LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPP 141
Query: 281 KFFGNMCSLITLNLSNNKLSGQLSEIIQNLSSGCLENSLKSLYLENSLTGVISESFFSNI 340
L L+L+NN L+E+ L +G LEN L ENSL + F S++
Sbjct: 142 GLLTPTPKLEKLSLANN----NLTELPAGLLNG-LENLDTLLLQENSLYTIPKGFFGSHL 196
Query: 341 SNLKELHLANNPLVLKLSHDWVPPFQLIIISLSSCKIGPHFPKWLQ 386
LH NP W L +C+I +F +WLQ
Sbjct: 197 LPFAFLH--GNP--------W----------LCNCEIL-YFRRWLQ 221
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 30.8 bits (68), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 49/166 (29%), Positives = 69/166 (41%), Gaps = 28/166 (16%)
Query: 221 LSDNNLTSSIYPWLPNISSIFISIDLGFNQLQGSIPESFQHMVYLEHLRLSFNELEGGIP 280
LS N L S P L +D+ FN+L + + + L+ L L NEL+ P
Sbjct: 84 LSHNQLQS--LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPP 141
Query: 281 KFFGNMCSLITLNLSNNKLSGQLSEIIQNLSSGCLENSLKSLYLENSLTGVISESFFSNI 340
L L+L+NN L+E+ L +G LEN L ENSL + F S++
Sbjct: 142 GLLTPTPKLEKLSLANN----NLTELPAGLLNG-LENLDTLLLQENSLYTIPKGFFGSHL 196
Query: 341 SNLKELHLANNPLVLKLSHDWVPPFQLIIISLSSCKIGPHFPKWLQ 386
LH NP W L +C+I +F +WLQ
Sbjct: 197 LPFAFLH--GNP--------W----------LCNCEIL-YFRRWLQ 221
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 30.8 bits (68), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 49/166 (29%), Positives = 69/166 (41%), Gaps = 28/166 (16%)
Query: 221 LSDNNLTSSIYPWLPNISSIFISIDLGFNQLQGSIPESFQHMVYLEHLRLSFNELEGGIP 280
LS N L S P L +D+ FN+L + + + L+ L L NEL+ P
Sbjct: 84 LSHNQLQS--LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPP 141
Query: 281 KFFGNMCSLITLNLSNNKLSGQLSEIIQNLSSGCLENSLKSLYLENSLTGVISESFFSNI 340
L L+L+NN L+E+ L +G LEN L ENSL + F S++
Sbjct: 142 GLLTPTPKLEKLSLANN----NLTELPAGLLNG-LENLDTLLLQENSLYTIPKGFFGSHL 196
Query: 341 SNLKELHLANNPLVLKLSHDWVPPFQLIIISLSSCKIGPHFPKWLQ 386
LH NP W L +C+I +F +WLQ
Sbjct: 197 LPFAFLH--GNP--------W----------LCNCEIL-YFRRWLQ 221
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 50/110 (45%), Gaps = 10/110 (9%)
Query: 244 IDLGFNQLQGSIPESFQHMVYLEHLRLSFNELEG-GIPKFFGNMCSLITLNLSNNKLSGQ 302
+D+ N+LQ S M L HL LSFN+ + + K FGN+ L L LS K
Sbjct: 105 LDVSHNRLQNI---SCCPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL 161
Query: 303 LSEIIQNLSSGCLENSLKSLYLENSLTGVISESFFSNISNLKELHLANNP 352
+ +L C+ L S +++ G +ES I N LHL +P
Sbjct: 162 DLLPVAHLHLSCILLDLVSYHIK----GGETESL--QIPNTTVLHLVFHP 205
Score = 30.0 bits (66), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 52/108 (48%), Gaps = 11/108 (10%)
Query: 221 LSDNNLTSSIYPWLPNISSIFISIDLGFNQLQGSIPESFQHMVYLEHLRLSFNELEGGIP 280
LS N LT S++ LP + +DL N++ SIP+ H+ L+ L ++ N+L+
Sbjct: 435 LSSNMLTGSVFRCLPPKVKV---LDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSVPD 490
Query: 281 KFFGNMCSLITLNLSNNKLSGQ------LSEIIQNLSSGCLENSLKSL 322
F + SL + L +N LSE I N SG + NS S+
Sbjct: 491 GVFDRLTSLQYIWLHDNPWDCTCPGIRYLSEWI-NKHSGVVRNSAGSV 537
>pdb|2V70|A Chain A, Third Lrr Domain Of Human Slit2
pdb|2V70|B Chain B, Third Lrr Domain Of Human Slit2
pdb|2V70|C Chain C, Third Lrr Domain Of Human Slit2
pdb|2V70|D Chain D, Third Lrr Domain Of Human Slit2
Length = 220
Score = 30.4 bits (67), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 48/94 (51%), Gaps = 14/94 (14%)
Query: 515 NLENNSFSGRIPDSMGFLQNIQTLSLHNNRLTGELSSSFRNCSQLRLLDLGKNALYGEIP 574
N+++ F G L++++TL L +NR+T + SF S +RLL L N + P
Sbjct: 95 NVQHKMFKG--------LESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAP 146
Query: 575 TWMGESLSNLIVLSLKSNKFHGKIPFQLCQLAFL 608
++L +L L+L +N F+ C LA+L
Sbjct: 147 GAF-DTLHSLSTLNLLANPFNCN-----CYLAWL 174
>pdb|3TWI|D Chain D, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|E Chain E, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|F Chain F, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
Length = 179
Score = 30.0 bits (66), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 30/64 (46%)
Query: 244 IDLGFNQLQGSIPESFQHMVYLEHLRLSFNELEGGIPKFFGNMCSLITLNLSNNKLSGQL 303
++L NQL F + L HL L N+L+ F N+ SL + L NN +
Sbjct: 69 LNLAVNQLTALPVGVFDKLTKLTHLALHINQLKSIPMGVFDNLKSLTHIYLFNNPWDCEC 128
Query: 304 SEII 307
S+I+
Sbjct: 129 SDIL 132
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 30.0 bits (66), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 53/106 (50%), Gaps = 13/106 (12%)
Query: 255 IPESFQHMVYLEHLRLSFNELEGGIPKFFGNMCSLITLNLSNNKLSGQLSEIIQNLSSGC 314
+P++ Q LE L L+ N L +P ++ L L++ + +L+E+ + L+S
Sbjct: 119 LPDTXQQFAGLETLTLARNPLRA-LPASIASLNRLRELSI---RACPELTELPEPLASTD 174
Query: 315 LENS------LKSLYLENSLTGVIS-ESFFSNISNLKELHLANNPL 353
L+SL LE TG+ S + +N+ NLK L + N+PL
Sbjct: 175 ASGEHQGLVNLQSLRLE--WTGIRSLPASIANLQNLKSLKIRNSPL 218
>pdb|1WWL|A Chain A, Crystal Structure Of Cd14
pdb|1WWL|B Chain B, Crystal Structure Of Cd14
Length = 312
Score = 30.0 bits (66), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 62/269 (23%), Positives = 97/269 (36%), Gaps = 60/269 (22%)
Query: 522 SGRIPDSMGF-------LQNIQTLSLHNNRLTGELSSSFRNCS--QLRLLDL------GK 566
+ RIP + F + +Q L+L N +TG + L +L+L +
Sbjct: 77 AARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR 136
Query: 567 NALYGEIPTWMGESLSNLIVLSLKSNKFHGKIPFQLCQLAFLQVLDLSLNN-------IS 619
+A E+ W+ L L + S F + Q+ L LDLS N IS
Sbjct: 137 DAWLAELQQWLKPGLKVLSIAQAHSLNFSCE---QVRVFPALSTLDLSDNPELGERGLIS 193
Query: 620 GKIPKCFNNFTAMTQERSSDPTIKDKLMLTWKGSEREYRSTLGLVKSLELSNNNLNGAVP 679
P F + +++ M T G + ++ L+LS+N+L A
Sbjct: 194 ALCPLKFPTLQVLA--------LRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAG 245
Query: 680 EEIMDLVGLVALNLSKNHLTGQISPKIGQLKSLDFLDLSRNQLVGGIPSSLSQLSGLSVM 739
D QL SL+ Q+ G+P+ LS V+
Sbjct: 246 APSCDWPS--------------------QLNSLNLSFTGLKQVPKGLPAKLS------VL 279
Query: 740 DLSYNNLSGKIPTVTQLQSFNDTVYAGNP 768
DLSYN L + P+ +L + GNP
Sbjct: 280 DLSYNRLD-RNPSPDELPQVGNLSLKGNP 307
>pdb|3G04|C Chain C, Crystal Structure Of The Tsh Receptor In Complex With A
Thyroid- Stimulating Autoantibody
pdb|2XWT|C Chain C, Crystal Structure Of The Tsh Receptor In Complex With A
Blocking Type Tshr Autoantibody
Length = 239
Score = 30.0 bits (66), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 23/37 (62%), Gaps = 3/37 (8%)
Query: 234 LPNISSIFISIDLGFNQLQGSIPESFQHMVYLEHLRL 270
LPNIS I++SID+ QL+ SF ++ + H+ +
Sbjct: 54 LPNISRIYVSIDVTLQQLES---HSFYNLSKVTHIEI 87
>pdb|3V44|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Zebrafish
Tlr5
Length = 407
Score = 29.6 bits (65), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 58/259 (22%), Positives = 102/259 (39%), Gaps = 47/259 (18%)
Query: 510 SLVILNLENNSFSGRIPDSMGFLQNIQTLSLHNNRLTGELSSS--FRNCSQLRLLDLGKN 567
SL+IL L+ N F + L N++ L+L L G + S F+ + L +L L N
Sbjct: 80 SLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDN 139
Query: 568 ALYGEIPTWMGESLSNLIVLSLKSNKFHGKIPFQLCQLAFLQVLDLSLNNISGKIPKCFN 627
+ P L +FH VLDL+ N + +
Sbjct: 140 NIKKIQPA----------SFFLNMRRFH--------------VLDLTFNKVKSICEEDLL 175
Query: 628 NFTA--MTQERSSDPTIKD--KLMLTWKGSEREYRSTLGLVKSLELSNNNLNGAVPEEIM 683
NF T R S T++D + L W+ +++T + +L+LS N ++ +
Sbjct: 176 NFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNT--SITTLDLSGNGFKESMAKRFF 233
Query: 684 DLVG---LVALNLSKNHLTGQ-------ISPKIGQLKSLDF-----LDLSRNQLVGGIPS 728
D + + +L LS ++ G P K L+ DLS++++ + S
Sbjct: 234 DAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKS 293
Query: 729 SLSQLSGLSVMDLSYNNLS 747
S + L + L+ N ++
Sbjct: 294 VFSHFTDLEQLTLAQNEIN 312
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 29.6 bits (65), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Query: 134 NLSRLQHLDLGSNYLFSTGNLDWLSHLSYLRYLNL 168
+L L+HLDL N+L S + W LS L+YLNL
Sbjct: 98 SLGSLEHLDLSDNHLSSLSS-SWFGPLSSLKYLNL 131
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 29.6 bits (65), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Query: 134 NLSRLQHLDLGSNYLFSTGNLDWLSHLSYLRYLNL 168
+L L+HLDL N+L S + W LS L+YLNL
Sbjct: 72 SLGSLEHLDLSDNHLSSLSS-SWFGPLSSLKYLNL 105
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.137 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,779,082
Number of Sequences: 62578
Number of extensions: 912745
Number of successful extensions: 3220
Number of sequences better than 100.0: 97
Number of HSP's better than 100.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 48
Number of HSP's that attempted gapping in prelim test: 2287
Number of HSP's gapped (non-prelim): 557
length of query: 833
length of database: 14,973,337
effective HSP length: 107
effective length of query: 726
effective length of database: 8,277,491
effective search space: 6009458466
effective search space used: 6009458466
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)