Query 048006
Match_columns 833
No_of_seqs 874 out of 4963
Neff 10.1
Searched_HMMs 46136
Date Fri Mar 29 05:22:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048006.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048006hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 2E-72 4.4E-77 687.1 46.0 584 12-774 27-611 (968)
2 PLN00113 leucine-rich repeat r 100.0 2.1E-57 4.6E-62 554.9 38.4 518 87-774 69-588 (968)
3 KOG4194 Membrane glycoprotein 100.0 9.3E-40 2E-44 335.2 8.3 401 216-750 54-455 (873)
4 KOG4194 Membrane glycoprotein 100.0 2.5E-38 5.4E-43 324.7 7.0 274 485-791 197-489 (873)
5 KOG0472 Leucine-rich repeat pr 100.0 5.6E-41 1.2E-45 329.7 -17.2 494 87-747 45-541 (565)
6 KOG0472 Leucine-rich repeat pr 100.0 2.6E-39 5.7E-44 317.9 -12.8 431 214-770 91-541 (565)
7 KOG0618 Serine/threonine phosp 100.0 2.4E-35 5.2E-40 319.3 -2.5 289 77-426 11-299 (1081)
8 KOG0618 Serine/threonine phosp 100.0 1.3E-35 2.8E-40 321.4 -6.6 465 59-617 22-487 (1081)
9 KOG0444 Cytoskeletal regulator 100.0 5E-33 1.1E-37 287.4 -1.3 369 85-595 5-375 (1255)
10 KOG0444 Cytoskeletal regulator 100.0 1.2E-32 2.5E-37 284.7 -2.9 380 243-742 11-394 (1255)
11 KOG4237 Extracellular matrix p 99.9 9.1E-27 2E-31 229.8 -0.3 98 473-570 262-359 (498)
12 PLN03210 Resistant to P. syrin 99.9 1.4E-21 2.9E-26 239.2 26.9 341 280-721 551-904 (1153)
13 KOG4237 Extracellular matrix p 99.9 2.6E-24 5.7E-29 212.5 -1.9 282 485-774 67-363 (498)
14 PLN03210 Resistant to P. syrin 99.9 4.2E-21 9.1E-26 234.9 25.4 339 382-745 551-904 (1153)
15 PRK15387 E3 ubiquitin-protein 99.9 6.2E-21 1.4E-25 215.6 17.0 262 390-752 202-463 (788)
16 PRK15387 E3 ubiquitin-protein 99.9 6.6E-21 1.4E-25 215.4 15.9 267 366-733 202-468 (788)
17 PRK15370 E3 ubiquitin-protein 99.8 3.4E-19 7.4E-24 203.2 12.7 204 486-747 221-428 (754)
18 PRK15370 E3 ubiquitin-protein 99.8 8.5E-19 1.8E-23 200.0 11.4 246 390-723 179-428 (754)
19 cd00116 LRR_RI Leucine-rich re 99.7 1.7E-18 3.7E-23 184.7 3.2 263 91-405 2-294 (319)
20 cd00116 LRR_RI Leucine-rich re 99.7 1.3E-18 2.8E-23 185.5 0.2 84 663-746 222-319 (319)
21 KOG0617 Ras suppressor protein 99.7 3E-19 6.5E-24 156.4 -4.5 183 530-751 30-216 (264)
22 KOG0617 Ras suppressor protein 99.7 3E-19 6.5E-24 156.4 -4.6 181 553-771 29-213 (264)
23 PLN03150 hypothetical protein; 99.5 2.7E-14 5.8E-19 163.2 13.0 130 9-150 367-504 (623)
24 PLN03150 hypothetical protein; 99.5 5.4E-14 1.2E-18 160.7 12.5 116 664-779 420-537 (623)
25 KOG0532 Leucine-rich repeat (L 99.3 4.1E-14 8.8E-19 147.3 -4.6 195 484-721 74-271 (722)
26 KOG0532 Leucine-rich repeat (L 99.3 2.1E-13 4.6E-18 142.1 -3.8 196 507-745 73-271 (722)
27 COG4886 Leucine-rich repeat (L 99.2 1.5E-11 3.3E-16 134.9 7.4 197 489-727 97-294 (394)
28 COG4886 Leucine-rich repeat (L 99.2 1.9E-11 4.1E-16 134.1 7.0 198 513-752 97-295 (394)
29 KOG1909 Ran GTPase-activating 99.2 2.4E-12 5.2E-17 126.9 -2.5 258 259-618 26-310 (382)
30 KOG1259 Nischarin, modulator o 99.1 1.6E-11 3.6E-16 118.0 1.7 133 581-751 283-416 (490)
31 KOG3207 Beta-tubulin folding c 99.1 1.2E-11 2.7E-16 125.3 0.3 85 664-748 248-340 (505)
32 PF14580 LRR_9: Leucine-rich r 99.1 3.4E-11 7.3E-16 112.1 2.5 111 83-201 15-127 (175)
33 KOG3207 Beta-tubulin folding c 99.0 3.5E-11 7.5E-16 122.1 -0.5 164 134-300 119-284 (505)
34 KOG1909 Ran GTPase-activating 99.0 4.5E-11 9.7E-16 118.2 -0.4 234 58-299 30-310 (382)
35 PF14580 LRR_9: Leucine-rich r 99.0 2.2E-10 4.8E-15 106.7 4.0 126 59-195 20-148 (175)
36 KOG1259 Nischarin, modulator o 99.0 1.6E-10 3.5E-15 111.3 1.5 134 553-725 280-414 (490)
37 KOG0531 Protein phosphatase 1, 98.9 2.6E-10 5.7E-15 125.0 -1.1 246 460-752 72-323 (414)
38 KOG0531 Protein phosphatase 1, 98.9 3.8E-10 8.2E-15 123.8 -0.2 127 485-619 72-199 (414)
39 PF08263 LRRNT_2: Leucine rich 98.9 2.9E-09 6.3E-14 74.1 4.2 41 12-54 1-43 (43)
40 PF13855 LRR_8: Leucine rich r 98.8 2.1E-09 4.6E-14 82.1 3.1 60 687-746 2-61 (61)
41 PF13855 LRR_8: Leucine rich r 98.8 3.8E-09 8.2E-14 80.7 3.0 61 662-722 1-61 (61)
42 KOG4658 Apoptotic ATPase [Sign 98.8 5.7E-09 1.2E-13 122.0 5.2 109 83-194 567-675 (889)
43 KOG4658 Apoptotic ATPase [Sign 98.7 6.3E-09 1.4E-13 121.7 3.4 107 87-198 545-653 (889)
44 KOG1859 Leucine-rich repeat pr 98.5 2.1E-09 4.5E-14 115.7 -6.5 180 526-749 102-294 (1096)
45 KOG2120 SCF ubiquitin ligase, 98.5 9.4E-10 2E-14 106.2 -9.1 181 114-299 187-375 (419)
46 KOG1859 Leucine-rich repeat pr 98.5 1.7E-09 3.8E-14 116.3 -8.5 195 485-723 84-292 (1096)
47 KOG2120 SCF ubiquitin ligase, 98.4 1.4E-08 3E-13 98.2 -5.0 225 90-326 139-372 (419)
48 KOG2982 Uncharacterized conser 98.3 6.5E-08 1.4E-12 93.7 -2.7 90 84-173 68-158 (418)
49 KOG2982 Uncharacterized conser 98.2 2.4E-07 5.1E-12 89.9 0.2 93 132-227 41-134 (418)
50 KOG4579 Leucine-rich repeat (L 98.2 5.4E-08 1.2E-12 83.2 -3.8 57 665-723 80-136 (177)
51 KOG4579 Leucine-rich repeat (L 98.2 1.3E-07 2.8E-12 80.9 -3.0 61 557-619 53-113 (177)
52 COG5238 RNA1 Ran GTPase-activa 98.0 5.6E-07 1.2E-11 86.2 -2.4 47 336-402 87-133 (388)
53 COG5238 RNA1 Ran GTPase-activa 98.0 1.9E-06 4.1E-11 82.7 1.1 36 134-170 28-67 (388)
54 KOG4341 F-box protein containi 97.9 4.8E-07 1E-11 92.1 -4.2 283 88-400 139-437 (483)
55 PRK15386 type III secretion pr 97.9 2.3E-05 4.9E-10 82.5 7.5 76 529-618 48-124 (426)
56 KOG3665 ZYG-1-like serine/thre 97.8 4.5E-06 9.8E-11 95.5 0.9 116 111-230 147-266 (699)
57 KOG2739 Leucine-rich acidic nu 97.8 7.1E-06 1.5E-10 79.2 1.9 115 77-194 33-150 (260)
58 PF12799 LRR_4: Leucine Rich r 97.8 1.3E-05 2.7E-10 55.8 2.2 35 688-723 3-37 (44)
59 KOG1644 U2-associated snRNP A' 97.7 5.1E-05 1.1E-09 70.1 5.8 106 88-196 43-149 (233)
60 PF12799 LRR_4: Leucine Rich r 97.7 3.2E-05 6.8E-10 53.8 3.5 36 88-125 2-37 (44)
61 KOG1644 U2-associated snRNP A' 97.7 3E-05 6.5E-10 71.6 3.9 130 89-225 21-151 (233)
62 KOG3665 ZYG-1-like serine/thre 97.5 5.5E-05 1.2E-09 86.8 3.4 125 179-308 139-271 (699)
63 PRK15386 type III secretion pr 97.4 0.0006 1.3E-08 72.0 9.3 53 485-543 52-104 (426)
64 KOG2123 Uncharacterized conser 97.3 1.4E-05 2.9E-10 77.2 -3.7 104 85-193 17-123 (388)
65 KOG2739 Leucine-rich acidic nu 97.3 8.1E-05 1.8E-09 72.0 1.5 113 104-220 35-149 (260)
66 PF13306 LRR_5: Leucine rich r 97.2 0.0012 2.6E-08 59.3 8.1 123 503-632 6-128 (129)
67 PF13306 LRR_5: Leucine rich r 97.2 0.00094 2E-08 60.0 7.2 123 257-391 6-128 (129)
68 KOG4341 F-box protein containi 96.3 0.00032 7E-09 72.1 -3.5 290 58-353 138-438 (483)
69 KOG1947 Leucine rich repeat pr 95.8 0.0016 3.4E-08 73.9 -1.7 112 86-199 187-307 (482)
70 KOG2123 Uncharacterized conser 95.3 0.00071 1.5E-08 65.7 -5.5 83 111-199 18-100 (388)
71 PF00560 LRR_1: Leucine Rich R 95.2 0.0072 1.6E-07 34.8 0.6 11 689-699 3-13 (22)
72 PF00560 LRR_1: Leucine Rich R 95.2 0.007 1.5E-07 34.9 0.4 21 711-732 1-21 (22)
73 KOG1947 Leucine rich repeat pr 94.7 0.0039 8.5E-08 70.6 -2.7 116 81-196 208-330 (482)
74 KOG0473 Leucine-rich repeat pr 93.8 0.0019 4E-08 61.2 -6.3 88 82-174 37-124 (326)
75 KOG4308 LRR-containing protein 93.2 0.00067 1.5E-08 74.6 -12.1 109 510-619 88-217 (478)
76 KOG0473 Leucine-rich repeat pr 92.7 0.0046 1E-07 58.6 -5.5 83 662-747 42-124 (326)
77 KOG4308 LRR-containing protein 92.5 0.0012 2.6E-08 72.7 -11.5 89 532-620 203-304 (478)
78 PF13504 LRR_7: Leucine rich r 89.5 0.19 4.1E-06 26.7 1.0 9 560-568 4-12 (17)
79 smart00369 LRR_TYP Leucine-ric 87.9 0.41 8.8E-06 28.7 1.9 14 710-723 2-15 (26)
80 smart00370 LRR Leucine-rich re 87.9 0.41 8.8E-06 28.7 1.9 14 710-723 2-15 (26)
81 smart00369 LRR_TYP Leucine-ric 87.7 0.41 8.9E-06 28.7 1.8 21 557-578 2-22 (26)
82 smart00370 LRR Leucine-rich re 87.7 0.41 8.9E-06 28.7 1.8 21 557-578 2-22 (26)
83 PF13516 LRR_6: Leucine Rich r 83.7 0.64 1.4E-05 27.2 1.2 19 287-305 2-20 (24)
84 TIGR00864 PCC polycystin catio 78.8 1.4 3.1E-05 57.4 3.0 72 716-792 1-72 (2740)
85 KOG4242 Predicted myosin-I-bin 78.2 9.9 0.00021 40.9 8.3 60 487-546 415-481 (553)
86 KOG3864 Uncharacterized conser 76.2 0.4 8.6E-06 45.2 -2.1 81 535-615 103-185 (221)
87 smart00365 LRR_SD22 Leucine-ri 71.1 3.4 7.3E-05 24.9 1.7 15 161-175 2-16 (26)
88 smart00364 LRR_BAC Leucine-ric 64.9 4.6 0.0001 24.2 1.4 13 711-723 3-15 (26)
89 KOG4242 Predicted myosin-I-bin 63.8 51 0.0011 35.8 9.7 38 340-379 164-201 (553)
90 KOG3864 Uncharacterized conser 62.1 2.2 4.7E-05 40.4 -0.4 33 241-273 103-135 (221)
91 smart00368 LRR_RI Leucine rich 51.3 16 0.00035 22.3 2.3 15 287-301 2-16 (28)
92 TIGR00864 PCC polycystin catio 45.8 9.8 0.00021 50.3 1.3 37 740-776 1-38 (2740)
93 KOG3763 mRNA export factor TAP 44.5 11 0.00023 41.6 1.2 12 559-570 272-283 (585)
94 KOG3763 mRNA export factor TAP 39.6 19 0.00042 39.7 2.2 13 241-253 272-284 (585)
95 smart00367 LRR_CC Leucine-rich 28.5 40 0.00087 20.0 1.4 12 136-147 2-13 (26)
96 PRK14762 membrane protein; Pro 20.6 67 0.0014 18.8 1.2 18 812-829 5-22 (27)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=2e-72 Score=687.10 Aligned_cols=584 Identities=36% Similarity=0.549 Sum_probs=413.4
Q ss_pred CHHHHHHHHHhhhcCcCCCCCCCCCCCCCCCCCCCcccceEecCCCCcEEEEECCCCCCCCCCcceecCccccCCCCCCE
Q 048006 12 IDEEREALLTFKASLVDESGVLSSWGPEDEKRDCCKWTGLRCSNKTNHVILLDLQPIDFDSFPLRGTISPALLKLHDLRH 91 (833)
Q Consensus 12 ~~~~~~~ll~~k~~~~~~~~~~~~w~~~~~~~~~c~w~gv~c~~~~~~v~~l~L~~~~~~~~~l~~~~~~~l~~l~~L~~ 91 (833)
.++|+.||++||+++.+|.+.+.+|. .+.+||.|+||+|+. .++|+.|+|++ +.++|.+++++..+++|++
T Consensus 27 ~~~~~~~l~~~~~~~~~~~~~~~~w~---~~~~~c~w~gv~c~~-~~~v~~L~L~~-----~~i~~~~~~~~~~l~~L~~ 97 (968)
T PLN00113 27 HAEELELLLSFKSSINDPLKYLSNWN---SSADVCLWQGITCNN-SSRVVSIDLSG-----KNISGKISSAIFRLPYIQT 97 (968)
T ss_pred CHHHHHHHHHHHHhCCCCcccCCCCC---CCCCCCcCcceecCC-CCcEEEEEecC-----CCccccCChHHhCCCCCCE
Confidence 57899999999999988888899997 467999999999985 57999999998 7888999999999999999
Q ss_pred EeCCCCCCCCCCcccccc-CCCCCCEEEccCCCCCCCCCcccCCccccceecccCccCCCCCCcccccCCCCCcEEecCC
Q 048006 92 LNLSFNDFSGSPIPEFIG-SLSKLRYLDLFGTVFAGPIPPQLGNLSRLQHLDLGSNYLFSTGNLDWLSHLSYLRYLNLDE 170 (833)
Q Consensus 92 L~Ls~n~~~~~~~p~~~~-~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~Ls~ 170 (833)
|+|++|++++. +|..+. .+++|++|+|++|.+++.+|. +.+++|++|+|++|.+.. .
T Consensus 98 L~Ls~n~~~~~-ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~-~------------------ 155 (968)
T PLN00113 98 INLSNNQLSGP-IPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSG-E------------------ 155 (968)
T ss_pred EECCCCccCCc-CChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEECcCCcccc-c------------------
Confidence 99999999875 777654 899999999999999988885 457778888888777643 2
Q ss_pred CCCCCCchhHHhhcCCCCCCEEEccCCCCCCCCCccccccccCCCCCEEEccCCcCCCCCCCcccccccCCcEEEccCcc
Q 048006 171 SNLANSSDWFQVIGKLHSLKTLSLHSCYLPPVIPLSLNHLNSSTSLETLVLSDNNLTSSIYPWLPNISSIFISIDLGFNQ 250 (833)
Q Consensus 171 n~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~~L~~L~Ls~n~ 250 (833)
+|..++.+++|++|++++|.+.+.+|. .+... ++|++|++++|.+.+.+|..+.++.+ |++|++++|.
T Consensus 156 --------~p~~~~~l~~L~~L~L~~n~l~~~~p~--~~~~l-~~L~~L~L~~n~l~~~~p~~l~~l~~-L~~L~L~~n~ 223 (968)
T PLN00113 156 --------IPNDIGSFSSLKVLDLGGNVLVGKIPN--SLTNL-TSLEFLTLASNQLVGQIPRELGQMKS-LKWIYLGYNN 223 (968)
T ss_pred --------CChHHhcCCCCCEEECccCcccccCCh--hhhhC-cCCCeeeccCCCCcCcCChHHcCcCC-ccEEECcCCc
Confidence 233344444444444444444444443 22222 44445555555444444444444444 5555555555
Q ss_pred ccccccccccCCCCCcEEECcCCcccccccccccCCCCCcEEEccCCCCCchhhHHHhhcCCccccCCccEEEccccccc
Q 048006 251 LQGSIPESFQHMVYLEHLRLSFNELEGGIPKFFGNMCSLITLNLSNNKLSGQLSEIIQNLSSGCLENSLKSLYLENSLTG 330 (833)
Q Consensus 251 l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~~~~~~L~~L~L~~~~~~ 330 (833)
+++.+|..++++++|++|++++|.+++.+|..++++++|++|++++|++.+.+|..+..+
T Consensus 224 l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l-------------------- 283 (968)
T PLN00113 224 LSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSL-------------------- 283 (968)
T ss_pred cCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhc--------------------
Confidence 555555555555555555555555555555555555555555555555554444433332
Q ss_pred ccChhhhcCCCCCCEEECcCCccccccCCCccCCccccEEEccCccCCCCCChhhcccccccEEeecCCccccccchhHH
Q 048006 331 VISESFFSNISNLKELHLANNPLVLKLSHDWVPPFQLIIISLSSCKIGPHFPKWLQTQNQIELLDISNTGISDTIPDWFW 410 (833)
Q Consensus 331 ~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~ 410 (833)
++|++|++++|.+.+..+..+..+++|+.|++++|.+.+..|.++..+++|+.|++++|.+.+.+|..+.
T Consensus 284 ----------~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~ 353 (968)
T PLN00113 284 ----------QKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLG 353 (968)
T ss_pred ----------cCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHh
Confidence 3333333333333322222222222233333333333334444444445555555544444444333322
Q ss_pred hhcccccEEEcccccccccCCccccccCCCCCceecccCcccccCCCCCCCCceeecCCCcccccccccccccCCcccEE
Q 048006 411 NLSNKFSFLDLASNQIKGKLPNLSSRFGTSNPGIDISSNHFEGLIPPLPSNSSFLNLSKNRFSGSISFLCSISGSKLTYV 490 (833)
Q Consensus 411 ~~~~~L~~L~L~~n~l~~~~p~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L 490 (833)
. +++|+.|
T Consensus 354 ~------------------------------------------------------------------------~~~L~~L 361 (968)
T PLN00113 354 K------------------------------------------------------------------------HNNLTVL 361 (968)
T ss_pred C------------------------------------------------------------------------CCCCcEE
Confidence 2 2455666
Q ss_pred EcCCCcCcCCCCCcccCCCCCcEEEccCCcccccCCCCccCcCCccEEEcccCcCccccCccccCCCCCcEeccCCCccC
Q 048006 491 DLSSNLLSGKLPDCWWTFDSLVILNLENNSFSGRIPDSMGFLQNIQTLSLHNNRLTGELSSSFRNCSQLRLLDLGKNALY 570 (833)
Q Consensus 491 ~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 570 (833)
++++|++++.+|..+..+++|+.|++++|.+.+.+|..+..+++|+.|++++|++++.+|..|..+++|+.|++++|.+.
T Consensus 362 ~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 441 (968)
T PLN00113 362 DLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQ 441 (968)
T ss_pred ECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCccc
Confidence 66666666666666666667777777777777777777777777777777777777777777777777777777777777
Q ss_pred CCCCcchhhcCCccceEEecCCcccccccccccCCCCCCEEeccCCcCcccCCccccccccccccCCCCcccccceEEee
Q 048006 571 GEIPTWMGESLSNLIVLSLKSNKFHGKIPFQLCQLAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKDKLMLTW 650 (833)
Q Consensus 571 ~~~p~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~ 650 (833)
+.+|..+. .+++|++|++++|++.+.+|..+ ..++|+.|++++|++++..|..+.++++|
T Consensus 442 ~~~~~~~~-~l~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~l~~L------------------ 501 (968)
T PLN00113 442 GRINSRKW-DMPSLQMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGSLSEL------------------ 501 (968)
T ss_pred CccChhhc-cCCCCcEEECcCceeeeecCccc-ccccceEEECcCCccCCccChhhhhhhcc------------------
Confidence 76666555 57778888888887777777655 45789999999999998888888777666
Q ss_pred ccCcchhccccCcccEEEccCCcCCCCCchhhhcccCCcEEECCCccccccCCcccCCCCCCCEEeCCCCcCcccCCccc
Q 048006 651 KGSEREYRSTLGLVKSLELSNNNLNGAVPEEIMDLVGLVALNLSKNHLTGQISPKIGQLKSLDFLDLSRNQLVGGIPSSL 730 (833)
Q Consensus 651 ~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l 730 (833)
+.|+|++|++.+.+|..+.++++|++|+|++|.+++.+|..|+.+++|+.|||++|++++.+|..+
T Consensus 502 --------------~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l 567 (968)
T PLN00113 502 --------------MQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNL 567 (968)
T ss_pred --------------CEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhH
Confidence 889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCEEECcCCcCccCCCCccccCccccccccCCCCCCCCC
Q 048006 731 SQLSGLSVMDLSYNNLSGKIPTVTQLQSFNDTVYAGNPELCGLP 774 (833)
Q Consensus 731 ~~l~~L~~L~ls~N~l~g~ip~~~~~~~l~~~~~~gn~~lc~~~ 774 (833)
..+++|++|++++|+++|.+|..+++.++....+.|||.+||.+
T Consensus 568 ~~l~~L~~l~ls~N~l~~~~p~~~~~~~~~~~~~~~n~~lc~~~ 611 (968)
T PLN00113 568 GNVESLVQVNISHNHLHGSLPSTGAFLAINASAVAGNIDLCGGD 611 (968)
T ss_pred hcCcccCEEeccCCcceeeCCCcchhcccChhhhcCCccccCCc
Confidence 99999999999999999999999999999999999999999854
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=2.1e-57 Score=554.91 Aligned_cols=518 Identities=33% Similarity=0.482 Sum_probs=377.4
Q ss_pred CCCCEEeCCCCCCCCCCccccccCCCCCCEEEccCCCCCCCCCcccC-CccccceecccCccCCCCCCcccccCCCCCcE
Q 048006 87 HDLRHLNLSFNDFSGSPIPEFIGSLSKLRYLDLFGTVFAGPIPPQLG-NLSRLQHLDLGSNYLFSTGNLDWLSHLSYLRY 165 (833)
Q Consensus 87 ~~L~~L~Ls~n~~~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~-~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~ 165 (833)
.+++.|+|++|.+++. +|..+..+++|++|+|++|.+.+.+|..+. .+++|++|+|++|.+..
T Consensus 69 ~~v~~L~L~~~~i~~~-~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~--------------- 132 (968)
T PLN00113 69 SRVVSIDLSGKNISGK-ISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTG--------------- 132 (968)
T ss_pred CcEEEEEecCCCcccc-CChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCcccc---------------
Confidence 4688899999988885 788888889999999998888877776554 66777777776665532
Q ss_pred EecCCCCCCCCchhHHhhcCCCCCCEEEccCCCCCCCCCccccccccCCCCCEEEccCCcCCCCCCCcccccccCCcEEE
Q 048006 166 LNLDESNLANSSDWFQVIGKLHSLKTLSLHSCYLPPVIPLSLNHLNSSTSLETLVLSDNNLTSSIYPWLPNISSIFISID 245 (833)
Q Consensus 166 L~Ls~n~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~~L~~L~ 245 (833)
.+| .+.+++|++|++++|.+.+.+|. .+... ++|++|++++|.+.+.+|..+.++++ |++|+
T Consensus 133 ------------~~p--~~~l~~L~~L~Ls~n~~~~~~p~--~~~~l-~~L~~L~L~~n~l~~~~p~~~~~l~~-L~~L~ 194 (968)
T PLN00113 133 ------------SIP--RGSIPNLETLDLSNNMLSGEIPN--DIGSF-SSLKVLDLGGNVLVGKIPNSLTNLTS-LEFLT 194 (968)
T ss_pred ------------ccC--ccccCCCCEEECcCCcccccCCh--HHhcC-CCCCEEECccCcccccCChhhhhCcC-CCeee
Confidence 011 12345555555555555554443 22222 45555555555554444444444444 44444
Q ss_pred ccCccccccccccccCCCCCcEEECcCCcccccccccccCCCCCcEEEccCCCCCchhhHHHhhcCCccccCCccEEEcc
Q 048006 246 LGFNQLQGSIPESFQHMVYLEHLRLSFNELEGGIPKFFGNMCSLITLNLSNNKLSGQLSEIIQNLSSGCLENSLKSLYLE 325 (833)
Q Consensus 246 Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~~~~~~L~~L~L~ 325 (833)
+++|.+++.+|..++.+++|++|++++|++++.+|..++++++|++|++++|.+++.+|.
T Consensus 195 L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~-------------------- 254 (968)
T PLN00113 195 LASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPS-------------------- 254 (968)
T ss_pred ccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccCh--------------------
Confidence 444444444444444444444444444444444444444444444444444444433332
Q ss_pred cccccccChhhhcCCCCCCEEECcCCccccccCCCccCCccccEEEccCccCCCCCChhhcccccccEEeecCCcccccc
Q 048006 326 NSLTGVISESFFSNISNLKELHLANNPLVLKLSHDWVPPFQLIIISLSSCKIGPHFPKWLQTQNQIELLDISNTGISDTI 405 (833)
Q Consensus 326 ~~~~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~ 405 (833)
.|.++++|++|++++|.+.+. +|..+..+++|++|++++|.+.+.+
T Consensus 255 ----------~l~~l~~L~~L~L~~n~l~~~------------------------~p~~l~~l~~L~~L~Ls~n~l~~~~ 300 (968)
T PLN00113 255 ----------SLGNLKNLQYLFLYQNKLSGP------------------------IPPSIFSLQKLISLDLSDNSLSGEI 300 (968)
T ss_pred ----------hHhCCCCCCEEECcCCeeecc------------------------CchhHhhccCcCEEECcCCeeccCC
Confidence 345555666666666665544 4444555555555555555555555
Q ss_pred chhHHhhcccccEEEcccccccccCCccccccCCCCCceecccCcccccCCCCCCCCceeecCCCcccccccccccccCC
Q 048006 406 PDWFWNLSNKFSFLDLASNQIKGKLPNLSSRFGTSNPGIDISSNHFEGLIPPLPSNSSFLNLSKNRFSGSISFLCSISGS 485 (833)
Q Consensus 406 ~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~ 485 (833)
|..+..+. +|++|++++|.+.+.+|... ..++
T Consensus 301 p~~~~~l~-~L~~L~l~~n~~~~~~~~~~-----------------------------------------------~~l~ 332 (968)
T PLN00113 301 PELVIQLQ-NLEILHLFSNNFTGKIPVAL-----------------------------------------------TSLP 332 (968)
T ss_pred ChhHcCCC-CCcEEECCCCccCCcCChhH-----------------------------------------------hcCC
Confidence 55444332 45555555544443333210 0136
Q ss_pred cccEEEcCCCcCcCCCCCcccCCCCCcEEEccCCcccccCCCCccCcCCccEEEcccCcCccccCccccCCCCCcEeccC
Q 048006 486 KLTYVDLSSNLLSGKLPDCWWTFDSLVILNLENNSFSGRIPDSMGFLQNIQTLSLHNNRLTGELSSSFRNCSQLRLLDLG 565 (833)
Q Consensus 486 ~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 565 (833)
+|+.|++++|.+++.+|..+..+++|+.|++++|++++.+|..+..+++|+.|++++|++.+.+|..+..+++|+.|+++
T Consensus 333 ~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~ 412 (968)
T PLN00113 333 RLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQ 412 (968)
T ss_pred CCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECc
Confidence 78889999999998899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccCCCCCcchhhcCCccceEEecCCcccccccccccCCCCCCEEeccCCcCcccCCccccccccccccCCCCcccccc
Q 048006 566 KNALYGEIPTWMGESLSNLIVLSLKSNKFHGKIPFQLCQLAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKDK 645 (833)
Q Consensus 566 ~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~ 645 (833)
+|++++.+|..+. .++.|+.|++++|.+++.+|..+..+++|+.|++++|++.+.+|..+. .
T Consensus 413 ~n~l~~~~p~~~~-~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~-~---------------- 474 (968)
T PLN00113 413 DNSFSGELPSEFT-KLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFG-S---------------- 474 (968)
T ss_pred CCEeeeECChhHh-cCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCcccc-c----------------
Confidence 9999999998776 699999999999999999999899999999999999999988886542 2
Q ss_pred eEEeeccCcchhccccCcccEEEccCCcCCCCCchhhhcccCCcEEECCCccccccCCcccCCCCCCCEEeCCCCcCccc
Q 048006 646 LMLTWKGSEREYRSTLGLVKSLELSNNNLNGAVPEEIMDLVGLVALNLSKNHLTGQISPKIGQLKSLDFLDLSRNQLVGG 725 (833)
Q Consensus 646 ~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ 725 (833)
++|+.|++++|++++.+|..+..+++|++|+|++|++++.+|+.+.++++|++|+|++|++++.
T Consensus 475 ----------------~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ 538 (968)
T PLN00113 475 ----------------KRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQ 538 (968)
T ss_pred ----------------ccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCccccc
Confidence 2459999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccccCCCCCCEEECcCCcCccCCCCc-cccCccccccccCCCCCCCCC
Q 048006 726 IPSSLSQLSGLSVMDLSYNNLSGKIPTV-TQLQSFNDTVYAGNPELCGLP 774 (833)
Q Consensus 726 ~p~~l~~l~~L~~L~ls~N~l~g~ip~~-~~~~~l~~~~~~gn~~lc~~~ 774 (833)
+|..+..+++|+.||+++|+++|.+|.. ..+..+..+++.+|+..+..|
T Consensus 539 ~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p 588 (968)
T PLN00113 539 IPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLP 588 (968)
T ss_pred CChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCC
Confidence 9999999999999999999999999975 556677888899998776444
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=9.3e-40 Score=335.18 Aligned_cols=401 Identities=24% Similarity=0.236 Sum_probs=287.9
Q ss_pred CCEEEccCCcCCCCCCCccc-ccccCCcEEEccCccccccccccccCCCCCcEEECcCCcccccccccccCCCCCcEEEc
Q 048006 216 LETLVLSDNNLTSSIYPWLP-NISSIFISIDLGFNQLQGSIPESFQHMVYLEHLRLSFNELEGGIPKFFGNMCSLITLNL 294 (833)
Q Consensus 216 L~~L~Ls~n~l~~~~~~~l~-~l~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 294 (833)
-+.||.+++.+.......+. -++.-.+.||+++|++....+..|.++++|+++++.+|.++ .+|..-....+|+.|+|
T Consensus 54 ~~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L 132 (873)
T KOG4194|consen 54 TRLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDL 132 (873)
T ss_pred ceeeecCccccccccccccCCcCccceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEee
Confidence 34556666655432111111 11111567999999999888888999999999999999998 57876666777999999
Q ss_pred cCCCCCchhhHHHhhcCCccccCCccEEEcccccccccChhhhcCCCCCCEEECcCCccccccCCCccCCccccEEEccC
Q 048006 295 SNNKLSGQLSEIIQNLSSGCLENSLKSLYLENSLTGVISESFFSNISNLKELHLANNPLVLKLSHDWVPPFQLIIISLSS 374 (833)
Q Consensus 295 s~n~l~~~~~~~l~~l~~~~~~~~L~~L~L~~~~~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~ 374 (833)
.+|.|+..-.+.++.++ .|+.|||+-|.+.+|+...|..-.++++|+|++|.|+....+.|..+.+|.+|.|+.
T Consensus 133 ~~N~I~sv~se~L~~l~------alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsr 206 (873)
T KOG4194|consen 133 RHNLISSVTSEELSALP------ALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSR 206 (873)
T ss_pred eccccccccHHHHHhHh------hhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeeccc
Confidence 99999988888888888 888888888888888887888778888888888888877777777777777777777
Q ss_pred ccCCCCCChhhcccccccEEeecCCccccccchhHHhhcccccEEEcccccccccCCccccccCCCCCceecccCccccc
Q 048006 375 CKIGPHFPKWLQTQNQIELLDISNTGISDTIPDWFWNLSNKFSFLDLASNQIKGKLPNLSSRFGTSNPGIDISSNHFEGL 454 (833)
Q Consensus 375 ~~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~~l~~l~l~~n~l~~~ 454 (833)
|.++...+..|+++++|+.|+|..|+|.-.---
T Consensus 207 NrittLp~r~Fk~L~~L~~LdLnrN~irive~l----------------------------------------------- 239 (873)
T KOG4194|consen 207 NRITTLPQRSFKRLPKLESLDLNRNRIRIVEGL----------------------------------------------- 239 (873)
T ss_pred CcccccCHHHhhhcchhhhhhccccceeeehhh-----------------------------------------------
Confidence 777766666666677766666666665411111
Q ss_pred CCCCCCCCceeecCCCcccccccccccccCCcccEEEcCCCcCcCCCCCcccCCCCCcEEEccCCcccccCCCCccCcCC
Q 048006 455 IPPLPSNSSFLNLSKNRFSGSISFLCSISGSKLTYVDLSSNLLSGKLPDCWWTFDSLVILNLENNSFSGRIPDSMGFLQN 534 (833)
Q Consensus 455 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 534 (833)
.+.++++|+.|.+..|.+.......|..+.++++|+|+.|++...-..++.+++.
T Consensus 240 -------------------------tFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~ 294 (873)
T KOG4194|consen 240 -------------------------TFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTS 294 (873)
T ss_pred -------------------------hhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccch
Confidence 1112366677777777777666777888888888888888888777777788888
Q ss_pred ccEEEcccCcCccccCccccCCCCCcEeccCCCccCCCCCcchhhcCCccceEEecCCcccccccccccCCCCCCEEecc
Q 048006 535 IQTLSLHNNRLTGELSSSFRNCSQLRLLDLGKNALYGEIPTWMGESLSNLIVLSLKSNKFHGKIPFQLCQLAFLQVLDLS 614 (833)
Q Consensus 535 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls 614 (833)
|+.|++++|.|..+-++++..+++|++|+|+.|+|+ .+++..+..+..|++|+|++|.++..-...|..+++|+.|||+
T Consensus 295 L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~-~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr 373 (873)
T KOG4194|consen 295 LEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRIT-RLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLR 373 (873)
T ss_pred hhhhccchhhhheeecchhhhcccceeEeccccccc-cCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCc
Confidence 888888888888777888888888888888888887 6766666577888888888888876666677788888888888
Q ss_pred CCcCcccCCccccccccccccCCCCcccccceEEeeccCcchhccccCcccEEEccCCcCCCCCchhhhcccCCcEEECC
Q 048006 615 LNNISGKIPKCFNNFTAMTQERSSDPTIKDKLMLTWKGSEREYRSTLGLVKSLELSNNNLNGAVPEEIMDLVGLVALNLS 694 (833)
Q Consensus 615 ~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls 694 (833)
+|.++..+.+. ...|.++++|+.|+|.
T Consensus 374 ~N~ls~~IEDa-----------------------------------------------------a~~f~gl~~LrkL~l~ 400 (873)
T KOG4194|consen 374 SNELSWCIEDA-----------------------------------------------------AVAFNGLPSLRKLRLT 400 (873)
T ss_pred CCeEEEEEecc-----------------------------------------------------hhhhccchhhhheeec
Confidence 88887654432 1224445556666666
Q ss_pred CccccccCCcccCCCCCCCEEeCCCCcCcccCCccccCCCCCCEEECcCCcCccCC
Q 048006 695 KNHLTGQISPKIGQLKSLDFLDLSRNQLVGGIPSSLSQLSGLSVMDLSYNNLSGKI 750 (833)
Q Consensus 695 ~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~i 750 (833)
+|++......+|.++++|++|||.+|.|..+-|.+|..+ .|+.|-+..-.+-|.+
T Consensus 401 gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nSssflCDC 455 (873)
T KOG4194|consen 401 GNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNSSSFLCDC 455 (873)
T ss_pred CceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhcccceEEec
Confidence 666654444566666666666666666666666666666 5666665544444443
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=2.5e-38 Score=324.74 Aligned_cols=274 Identities=24% Similarity=0.267 Sum_probs=230.3
Q ss_pred CcccEEEcCCCcCcCCCCCcccCCCCCcEEEccCCcccccCCCCccCcCCccEEEcccCcCccccCccccCCCCCcEecc
Q 048006 485 SKLTYVDLSSNLLSGKLPDCWWTFDSLVILNLENNSFSGRIPDSMGFLQNIQTLSLHNNRLTGELSSSFRNCSQLRLLDL 564 (833)
Q Consensus 485 ~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 564 (833)
.+|..|.|+.|+++...+..|.++++|+.|+|..|+|.-.---.|.++++|+.|.|..|.+.......|..+.++++|+|
T Consensus 197 nsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L 276 (873)
T KOG4194|consen 197 NSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNL 276 (873)
T ss_pred chheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeec
Confidence 56778888888888777777888899999999999888554567888999999999999999888888999999999999
Q ss_pred CCCccCCCCCcchhhcCCccceEEecCCcccccccccccCCCCCCEEeccCCcCcccCCccccccccccccCCCCccccc
Q 048006 565 GKNALYGEIPTWMGESLSNLIVLSLKSNKFHGKIPFQLCQLAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKD 644 (833)
Q Consensus 565 ~~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~ 644 (833)
+.|++...-..|++ ++++|+.|+|++|.|....++.+...++|++|+|++|+|+...+.+|..+..|
T Consensus 277 ~~N~l~~vn~g~lf-gLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~L------------ 343 (873)
T KOG4194|consen 277 ETNRLQAVNEGWLF-GLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQL------------ 343 (873)
T ss_pred ccchhhhhhccccc-ccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHh------------
Confidence 99999854556777 79999999999999998888899999999999999999997777778777666
Q ss_pred ceEEeeccCcchhccccCcccEEEccCCcCCCCCchhhhcccCCcEEECCCccccccCCc---ccCCCCCCCEEeCCCCc
Q 048006 645 KLMLTWKGSEREYRSTLGLVKSLELSNNNLNGAVPEEIMDLVGLVALNLSKNHLTGQISP---KIGQLKSLDFLDLSRNQ 721 (833)
Q Consensus 645 ~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~---~l~~l~~L~~L~Ls~N~ 721 (833)
++|.|++|.+...-...|..+++|++|||++|.+++.|.+ .|.+|++|+.|+|.+|+
T Consensus 344 --------------------e~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNq 403 (873)
T KOG4194|consen 344 --------------------EELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQ 403 (873)
T ss_pred --------------------hhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCce
Confidence 8899999999877777889999999999999999977764 47889999999999999
Q ss_pred CcccCCccccCCCCCCEEECcCCcCccCCCCccccCccccccccCCCCCCCCCCC----------------CCCCCCCCC
Q 048006 722 LVGGIPSSLSQLSGLSVMDLSYNNLSGKIPTVTQLQSFNDTVYAGNPELCGLPLP----------------NKCRDEESA 785 (833)
Q Consensus 722 l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~l~~~~~~gn~~lc~~~~~----------------~~c~~~~~~ 785 (833)
+..+.-.+|.++..|+.||+.+|.+...-|..-....++++.+..-..+|+|++. ..|..|+..
T Consensus 404 lk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m~Lk~Lv~nSssflCDCql~Wl~qWl~~~~lq~sv~a~CayPe~L 483 (873)
T KOG4194|consen 404 LKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPMELKELVMNSSSFLCDCQLKWLAQWLYRRKLQSSVIAKCAYPEPL 483 (873)
T ss_pred eeecchhhhccCcccceecCCCCcceeecccccccchhhhhhhcccceEEeccHHHHHHHHHhcccccceeeeccCCccc
Confidence 9977778999999999999999999876665422226667777667789999742 469888877
Q ss_pred CCCCCc
Q 048006 786 AGPGIT 791 (833)
Q Consensus 786 ~~~~~~ 791 (833)
++..+.
T Consensus 484 ad~~i~ 489 (873)
T KOG4194|consen 484 ADQSIV 489 (873)
T ss_pred ccceeE
Confidence 765554
No 5
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=5.6e-41 Score=329.69 Aligned_cols=494 Identities=26% Similarity=0.345 Sum_probs=258.9
Q ss_pred CCCCEEeCCCCCCCCCCccccccCCCCCCEEEccCCCCCCCCCcccCCccccceecccCccCCCCCCcccccCCCCCcEE
Q 048006 87 HDLRHLNLSFNDFSGSPIPEFIGSLSKLRYLDLFGTVFAGPIPPQLGNLSRLQHLDLGSNYLFSTGNLDWLSHLSYLRYL 166 (833)
Q Consensus 87 ~~L~~L~Ls~n~~~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L 166 (833)
..++.|++++|.+.. +-+.+.++..|.+|++.+|+++ .+|.+++.+.+++.|+.++|.+. ..++.++.+.+|+++
T Consensus 45 v~l~~lils~N~l~~--l~~dl~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls--~lp~~i~s~~~l~~l 119 (565)
T KOG0472|consen 45 VDLQKLILSHNDLEV--LREDLKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS--ELPEQIGSLISLVKL 119 (565)
T ss_pred cchhhhhhccCchhh--ccHhhhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh--hccHHHhhhhhhhhh
Confidence 346666777776663 4455666777777777777766 56667777777777777777664 233334444444444
Q ss_pred ecCCCCCCCCchhHHhhcCCCCCCEEEccCCCCCCCCCccccccccCCCCCEEEccCCcCCCCCCCcccccccCCcEEEc
Q 048006 167 NLDESNLANSSDWFQVIGKLHSLKTLSLHSCYLPPVIPLSLNHLNSSTSLETLVLSDNNLTSSIYPWLPNISSIFISIDL 246 (833)
Q Consensus 167 ~Ls~n~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~~L~~L~L 246 (833)
++++|.+.. +++.++.+..|+.++..+|+++. .|+.+..+.+ +..+++
T Consensus 120 ~~s~n~~~e---l~~~i~~~~~l~dl~~~~N~i~s----------------------------lp~~~~~~~~-l~~l~~ 167 (565)
T KOG0472|consen 120 DCSSNELKE---LPDSIGRLLDLEDLDATNNQISS----------------------------LPEDMVNLSK-LSKLDL 167 (565)
T ss_pred hccccceee---cCchHHHHhhhhhhhcccccccc----------------------------CchHHHHHHH-HHHhhc
Confidence 444444333 23344444444444444444433 3344444444 555555
Q ss_pred cCccccccccccccCCCCCcEEECcCCcccccccccccCCCCCcEEEccCCCCCchhhHHHhhcCCccccCCccEEEccc
Q 048006 247 GFNQLQGSIPESFQHMVYLEHLRLSFNELEGGIPKFFGNMCSLITLNLSNNKLSGQLSEIIQNLSSGCLENSLKSLYLEN 326 (833)
Q Consensus 247 s~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~~~~~~L~~L~L~~ 326 (833)
.+|+++...|..+. ++.|++||...|.++ .+|+.++.+.+|+.|+|.+|++... | .|..+. .|++++++.
T Consensus 168 ~~n~l~~l~~~~i~-m~~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~Nki~~l-P-ef~gcs------~L~Elh~g~ 237 (565)
T KOG0472|consen 168 EGNKLKALPENHIA-MKRLKHLDCNSNLLE-TLPPELGGLESLELLYLRRNKIRFL-P-EFPGCS------LLKELHVGE 237 (565)
T ss_pred cccchhhCCHHHHH-HHHHHhcccchhhhh-cCChhhcchhhhHHHHhhhcccccC-C-CCCccH------HHHHHHhcc
Confidence 55555544333333 666666666666555 3555566666666666666665422 2 344544 566666666
Q ss_pred ccccccChhhhcCCCCCCEEECcCCccccccCCCccCCccccEEEccCccCCCCCChhhcccccccEEeecCCccccccc
Q 048006 327 SLTGVISESFFSNISNLKELHLANNPLVLKLSHDWVPPFQLIIISLSSCKIGPHFPKWLQTQNQIELLDISNTGISDTIP 406 (833)
Q Consensus 327 ~~~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~ 406 (833)
|++..+|+....+++++.+||+.+|++. ..|..+.-+++|++||+|+|.|+ ..|
T Consensus 238 N~i~~lpae~~~~L~~l~vLDLRdNklk-------------------------e~Pde~clLrsL~rLDlSNN~is-~Lp 291 (565)
T KOG0472|consen 238 NQIEMLPAEHLKHLNSLLVLDLRDNKLK-------------------------EVPDEICLLRSLERLDLSNNDIS-SLP 291 (565)
T ss_pred cHHHhhHHHHhcccccceeeeccccccc-------------------------cCchHHHHhhhhhhhcccCCccc-cCC
Confidence 6666666655666666667776666665 44555555566666666666665 334
Q ss_pred hhHHhhcccccEEEcccccccccCCccccccCCCCCceecccCcccccCCCCCCCCceeecCCCcccccccccccccCCc
Q 048006 407 DWFWNLSNKFSFLDLASNQIKGKLPNLSSRFGTSNPGIDISSNHFEGLIPPLPSNSSFLNLSKNRFSGSISFLCSISGSK 486 (833)
Q Consensus 407 ~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~ 486 (833)
..++++ .|+.|.+.+|++...-.+...... ... | +.
T Consensus 292 ~sLgnl--hL~~L~leGNPlrTiRr~ii~~gT-----------------~~v---L----------------------Ky 327 (565)
T KOG0472|consen 292 YSLGNL--HLKFLALEGNPLRTIRREIISKGT-----------------QEV---L----------------------KY 327 (565)
T ss_pred cccccc--eeeehhhcCCchHHHHHHHHcccH-----------------HHH---H----------------------HH
Confidence 444444 455555555555421000000000 000 0 00
Q ss_pred ccEEEcCCCcCcCCCCCcccCCCCCcEEEccCCcccccCCCCccCcCCccEEEcccCcCccccCccccCCC--CCcEecc
Q 048006 487 LTYVDLSSNLLSGKLPDCWWTFDSLVILNLENNSFSGRIPDSMGFLQNIQTLSLHNNRLTGELSSSFRNCS--QLRLLDL 564 (833)
Q Consensus 487 L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~--~L~~L~L 564 (833)
|+. .+..-.++.. +. +. -..-+ ...+..| ......+.+.|++++-+++....+.|.... -....++
T Consensus 328 Lrs-~~~~dglS~s--e~-~~---e~~~t----~~~~~~~-~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~Vnf 395 (565)
T KOG0472|consen 328 LRS-KIKDDGLSQS--EG-GT---ETAMT----LPSESFP-DIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNF 395 (565)
T ss_pred HHH-hhccCCCCCC--cc-cc---cccCC----CCCCccc-chhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEec
Confidence 000 0000000000 00 00 00000 0000000 111223344444444444422222222111 1445566
Q ss_pred CCCccCCCCCcchhhcCCccc-eEEecCCcccccccccccCCCCCCEEeccCCcCcccCCccccccccccccCCCCcccc
Q 048006 565 GKNALYGEIPTWMGESLSNLI-VLSLKSNKFHGKIPFQLCQLAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIK 643 (833)
Q Consensus 565 ~~n~l~~~~p~~~~~~l~~L~-~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~ 643 (833)
+.|++. ++|..+.. +..+. .+.+++|.+. .+|..++.+++|..|+|++|.+. .+|..++.+..|
T Consensus 396 skNqL~-elPk~L~~-lkelvT~l~lsnn~is-fv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~L----------- 460 (565)
T KOG0472|consen 396 SKNQLC-ELPKRLVE-LKELVTDLVLSNNKIS-FVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRL----------- 460 (565)
T ss_pred ccchHh-hhhhhhHH-HHHHHHHHHhhcCccc-cchHHHHhhhcceeeecccchhh-hcchhhhhhhhh-----------
Confidence 666665 56655442 33332 3344444443 55666666666666666666665 555555554444
Q ss_pred cceEEeeccCcchhccccCcccEEEccCCcCCCCCchhhhcccCCcEEECCCccccccCCcccCCCCCCCEEeCCCCcCc
Q 048006 644 DKLMLTWKGSEREYRSTLGLVKSLELSNNNLNGAVPEEIMDLVGLVALNLSKNHLTGQISPKIGQLKSLDFLDLSRNQLV 723 (833)
Q Consensus 644 ~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 723 (833)
+.||+|.|+|. .+|..+..+..++.+-.++|++....|+.+.++.+|..|||.+|.+.
T Consensus 461 ---------------------q~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq 518 (565)
T KOG0472|consen 461 ---------------------QTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ 518 (565)
T ss_pred ---------------------heecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchh
Confidence 66777777666 67777766666776666777777666666777788888888888877
Q ss_pred ccCCccccCCCCCCEEECcCCcCc
Q 048006 724 GGIPSSLSQLSGLSVMDLSYNNLS 747 (833)
Q Consensus 724 ~~~p~~l~~l~~L~~L~ls~N~l~ 747 (833)
.+|..++++++|++|++++|+|+
T Consensus 519 -~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 519 -QIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred -hCChhhccccceeEEEecCCccC
Confidence 67777888888888888888877
No 6
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=2.6e-39 Score=317.92 Aligned_cols=431 Identities=26% Similarity=0.354 Sum_probs=286.9
Q ss_pred CCCCEEEccCCcCCCCCCCcccccccCCcEEEccCccccccccccccCCCCCcEEECcCCcccccccccccCCCCCcEEE
Q 048006 214 TSLETLVLSDNNLTSSIYPWLPNISSIFISIDLGFNQLQGSIPESFQHMVYLEHLRLSFNELEGGIPKFFGNMCSLITLN 293 (833)
Q Consensus 214 ~~L~~L~Ls~n~l~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 293 (833)
..++.++.++|+++ .+|+.+..+.+ ++.++.++|.+. ..|++++.+..|+.++..+|+++ ..|+.+.++.+|..++
T Consensus 91 ~~l~~l~vs~n~ls-~lp~~i~s~~~-l~~l~~s~n~~~-el~~~i~~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~ 166 (565)
T KOG0472|consen 91 EALKSLNVSHNKLS-ELPEQIGSLIS-LVKLDCSSNELK-ELPDSIGRLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLD 166 (565)
T ss_pred HHHHHhhcccchHh-hccHHHhhhhh-hhhhhcccccee-ecCchHHHHhhhhhhhccccccc-cCchHHHHHHHHHHhh
Confidence 44444444454443 34444555555 666666666666 44566777777777777777777 4666677777777777
Q ss_pred ccCCCCCchhhHHHhhcCCccccCCccEEEcccccccccChhhhcCCCCCCEEECcCCccccccCCCccCCccccEEEcc
Q 048006 294 LSNNKLSGQLSEIIQNLSSGCLENSLKSLYLENSLTGVISESFFSNISNLKELHLANNPLVLKLSHDWVPPFQLIIISLS 373 (833)
Q Consensus 294 Ls~n~l~~~~~~~l~~l~~~~~~~~L~~L~L~~~~~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~ 373 (833)
+.+|++....|..+. ++ .|+.++...|..+.+|+ .++.+.+|+.|++..|++..
T Consensus 167 ~~~n~l~~l~~~~i~-m~------~L~~ld~~~N~L~tlP~-~lg~l~~L~~LyL~~Nki~~------------------ 220 (565)
T KOG0472|consen 167 LEGNKLKALPENHIA-MK------RLKHLDCNSNLLETLPP-ELGGLESLELLYLRRNKIRF------------------ 220 (565)
T ss_pred ccccchhhCCHHHHH-HH------HHHhcccchhhhhcCCh-hhcchhhhHHHHhhhccccc------------------
Confidence 877777766666555 66 67777777777777777 36677777777777776652
Q ss_pred CccCCCCCChhhcccccccEEeecCCccccccchhHHhhcccccEEEcccccccccCCccccccCCCCCceecccCcccc
Q 048006 374 SCKIGPHFPKWLQTQNQIELLDISNTGISDTIPDWFWNLSNKFSFLDLASNQIKGKLPNLSSRFGTSNPGIDISSNHFEG 453 (833)
Q Consensus 374 ~~~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~~l~~l~l~~n~l~~ 453 (833)
.| .|.++..|+++.++.|.|. .+|.......+++..||+.+|+++. .|.
T Consensus 221 -------lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklke-~Pd--------------------- 269 (565)
T KOG0472|consen 221 -------LP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLKE-VPD--------------------- 269 (565)
T ss_pred -------CC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeecccccccc-Cch---------------------
Confidence 33 3555555666666666554 4444444333344445444444441 111
Q ss_pred cCCCCCCCCceeecCCCcccccccccccccCCcccEEEcCCCcCcCCCCCcccCCCCCcEEEccCCcccccCCCCccCc-
Q 048006 454 LIPPLPSNSSFLNLSKNRFSGSISFLCSISGSKLTYVDLSSNLLSGKLPDCWWTFDSLVILNLENNSFSGRIPDSMGFL- 532 (833)
Q Consensus 454 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l- 532 (833)
..|. +.+|++||+|+|.|+ .+|..++++ .|+.|.+.+|.+..+-.+.+..-
T Consensus 270 ------------------------e~cl--LrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT 321 (565)
T KOG0472|consen 270 ------------------------EICL--LRSLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLRTIRREIISKGT 321 (565)
T ss_pred ------------------------HHHH--hhhhhhhcccCCccc-cCCcccccc-eeeehhhcCCchHHHHHHHHcccH
Confidence 1111 356777888888887 456677777 88888888887753211111110
Q ss_pred -CCccEEE-------cccCcCc----cc-cCc---cccCCCCCcEeccCCCccCCCCCcchhhcCC--ccceEEecCCcc
Q 048006 533 -QNIQTLS-------LHNNRLT----GE-LSS---SFRNCSQLRLLDLGKNALYGEIPTWMGESLS--NLIVLSLKSNKF 594 (833)
Q Consensus 533 -~~L~~L~-------L~~n~l~----~~-~~~---~~~~l~~L~~L~L~~n~l~~~~p~~~~~~l~--~L~~L~L~~N~l 594 (833)
.-|++|. ++...-. +. .+. ......+.+.|++++-+++ .+|..+|+.-. -....+++.|++
T Consensus 322 ~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt-~VPdEVfea~~~~~Vt~VnfskNqL 400 (565)
T KOG0472|consen 322 QEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLT-LVPDEVFEAAKSEIVTSVNFSKNQL 400 (565)
T ss_pred HHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccc-cCCHHHHHHhhhcceEEEecccchH
Confidence 0122221 1111000 00 111 1223456778888888887 78887774221 266788888888
Q ss_pred cccccccccCCCCCCE-EeccCCcCcccCCccccccccccccCCCCcccccceEEeeccCcchhccccCcccEEEccCCc
Q 048006 595 HGKIPFQLCQLAFLQV-LDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKDKLMLTWKGSEREYRSTLGLVKSLELSNNN 673 (833)
Q Consensus 595 ~~~~~~~l~~l~~L~~-L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~ 673 (833)
. .+|..+..+..+.+ +++++|.+ +-+|..+..+++ +..|+|++|-
T Consensus 401 ~-elPk~L~~lkelvT~l~lsnn~i-sfv~~~l~~l~k--------------------------------Lt~L~L~NN~ 446 (565)
T KOG0472|consen 401 C-ELPKRLVELKELVTDLVLSNNKI-SFVPLELSQLQK--------------------------------LTFLDLSNNL 446 (565)
T ss_pred h-hhhhhhHHHHHHHHHHHhhcCcc-ccchHHHHhhhc--------------------------------ceeeecccch
Confidence 7 67777776666654 34555544 355555554444 4899999999
Q ss_pred CCCCCchhhhcccCCcEEECCCccccccCCcccCCCCCCCEEeCCCCcCcccCCccccCCCCCCEEECcCCcCccCCCCc
Q 048006 674 LNGAVPEEIMDLVGLVALNLSKNHLTGQISPKIGQLKSLDFLDLSRNQLVGGIPSSLSQLSGLSVMDLSYNNLSGKIPTV 753 (833)
Q Consensus 674 l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~ 753 (833)
+. .+|.+++.+..|+.||+|+|+|. .+|..+..+..++.+-.++|++....|+.+.++.+|++||+.+|.+...+|..
T Consensus 447 Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq~IPp~L 524 (565)
T KOG0472|consen 447 LN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQQIPPIL 524 (565)
T ss_pred hh-hcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchhhCChhh
Confidence 98 89999999999999999999998 88999988889999999999999888888999999999999999999888888
Q ss_pred cccCccccccccCCCCC
Q 048006 754 TQLQSFNDTVYAGNPEL 770 (833)
Q Consensus 754 ~~~~~l~~~~~~gn~~l 770 (833)
+.+..+.++.+.|||+-
T Consensus 525 gnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 525 GNMTNLRHLELDGNPFR 541 (565)
T ss_pred ccccceeEEEecCCccC
Confidence 99999999999999973
No 7
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=100.00 E-value=2.4e-35 Score=319.31 Aligned_cols=289 Identities=28% Similarity=0.372 Sum_probs=175.2
Q ss_pred eecCccccCCCCCCEEeCCCCCCCCCCccccccCCCCCCEEEccCCCCCCCCCcccCCccccceecccCccCCCCCCccc
Q 048006 77 GTISPALLKLHDLRHLNLSFNDFSGSPIPEFIGSLSKLRYLDLFGTVFAGPIPPQLGNLSRLQHLDLGSNYLFSTGNLDW 156 (833)
Q Consensus 77 ~~~~~~l~~l~~L~~L~Ls~n~~~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~~~~~~~~~~ 156 (833)
..||..+..-..++.|+++.|-+-..+ -+++.+..+|+.||+|+|+++ ..|..+..+.+|+.|+++.|.|. ..+..
T Consensus 11 ~~ip~~i~~~~~~~~ln~~~N~~l~~p-l~~~~~~v~L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n~i~--~vp~s 86 (1081)
T KOG0618|consen 11 ELIPEQILNNEALQILNLRRNSLLSRP-LEFVEKRVKLKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRNYIR--SVPSS 86 (1081)
T ss_pred cccchhhccHHHHHhhhccccccccCc-hHHhhheeeeEEeeccccccc-cCCchhhhHHHHhhcccchhhHh--hCchh
Confidence 345666666667889999998776533 245556666999999999987 78999999999999999999886 34466
Q ss_pred ccCCCCCcEEecCCCCCCCCchhHHhhcCCCCCCEEEccCCCCCCCCCccccccccCCCCCEEEccCCcCCCCCCCcccc
Q 048006 157 LSHLSYLRYLNLDESNLANSSDWFQVIGKLHSLKTLSLHSCYLPPVIPLSLNHLNSSTSLETLVLSDNNLTSSIYPWLPN 236 (833)
Q Consensus 157 l~~l~~L~~L~Ls~n~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~ 236 (833)
..++.+|++|.|..|.+.. +|..+..+++|++|+++.|.+.. +|. .+... +.++.+..++|.-... ++.
T Consensus 87 ~~~~~~l~~lnL~~n~l~~---lP~~~~~lknl~~LdlS~N~f~~-~Pl--~i~~l-t~~~~~~~s~N~~~~~----lg~ 155 (1081)
T KOG0618|consen 87 CSNMRNLQYLNLKNNRLQS---LPASISELKNLQYLDLSFNHFGP-IPL--VIEVL-TAEEELAASNNEKIQR----LGQ 155 (1081)
T ss_pred hhhhhcchhheeccchhhc---CchhHHhhhcccccccchhccCC-Cch--hHHhh-hHHHHHhhhcchhhhh----hcc
Confidence 7788888888888887766 56677788888888888877744 343 22222 5566666666621111 111
Q ss_pred cccCCcEEEccCccccccccccccCCCCCcEEECcCCcccccccccccCCCCCcEEEccCCCCCchhhHHHhhcCCcccc
Q 048006 237 ISSIFISIDLGFNQLQGSIPESFQHMVYLEHLRLSFNELEGGIPKFFGNMCSLITLNLSNNKLSGQLSEIIQNLSSGCLE 316 (833)
Q Consensus 237 l~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~~~~ 316 (833)
.. ++.+++..|.+.+.++.++..++. .|+|.+|.+.. ..+.++.+|+.+....|++.
T Consensus 156 ~~--ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~~---~dls~~~~l~~l~c~rn~ls---------------- 212 (1081)
T KOG0618|consen 156 TS--IKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEMEV---LDLSNLANLEVLHCERNQLS---------------- 212 (1081)
T ss_pred cc--chhhhhhhhhcccchhcchhhhhe--eeecccchhhh---hhhhhccchhhhhhhhcccc----------------
Confidence 11 455555555555555555544444 45555555541 22444555555555555443
Q ss_pred CCccEEEcccccccccChhhhcCCCCCCEEECcCCccccccCCCccCCccccEEEccCccCCCCCChhhcccccccEEee
Q 048006 317 NSLKSLYLENSLTGVISESFFSNISNLKELHLANNPLVLKLSHDWVPPFQLIIISLSSCKIGPHFPKWLQTQNQIELLDI 396 (833)
Q Consensus 317 ~~L~~L~L~~~~~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L 396 (833)
.+. -.-++|+.|+.+.|.++... .-.-+.+|++++++.+++. .+|+|+..+.+|+.++.
T Consensus 213 --------------~l~----~~g~~l~~L~a~~n~l~~~~--~~p~p~nl~~~dis~n~l~-~lp~wi~~~~nle~l~~ 271 (1081)
T KOG0618|consen 213 --------------ELE----ISGPSLTALYADHNPLTTLD--VHPVPLNLQYLDISHNNLS-NLPEWIGACANLEALNA 271 (1081)
T ss_pred --------------eEE----ecCcchheeeeccCcceeec--cccccccceeeecchhhhh-cchHHHHhcccceEecc
Confidence 221 13456677777777666211 1122345666666666665 34477777777777777
Q ss_pred cCCccccccchhHHhhcccccEEEcccccc
Q 048006 397 SNTGISDTIPDWFWNLSNKFSFLDLASNQI 426 (833)
Q Consensus 397 s~n~i~~~~~~~~~~~~~~L~~L~L~~n~l 426 (833)
.+|.++ .+|..+.... +|+.|....|.+
T Consensus 272 n~N~l~-~lp~ri~~~~-~L~~l~~~~nel 299 (1081)
T KOG0618|consen 272 NHNRLV-ALPLRISRIT-SLVSLSAAYNEL 299 (1081)
T ss_pred cchhHH-hhHHHHhhhh-hHHHHHhhhhhh
Confidence 666663 3343333322 344444444433
No 8
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=100.00 E-value=1.3e-35 Score=321.42 Aligned_cols=465 Identities=24% Similarity=0.279 Sum_probs=318.6
Q ss_pred cEEEEECCCCCCCCCCcceecCccccCCCCCCEEeCCCCCCCCCCccccccCCCCCCEEEccCCCCCCCCCcccCCcccc
Q 048006 59 HVILLDLQPIDFDSFPLRGTISPALLKLHDLRHLNLSFNDFSGSPIPEFIGSLSKLRYLDLFGTVFAGPIPPQLGNLSRL 138 (833)
Q Consensus 59 ~v~~l~L~~~~~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L 138 (833)
.++.|++.. +.+-...-+.+.+.-+|+.||+++|.+. ++|..+..+.+|+.|+++.|.|. ..|.+.+++.+|
T Consensus 22 ~~~~ln~~~-----N~~l~~pl~~~~~~v~L~~l~lsnn~~~--~fp~~it~l~~L~~ln~s~n~i~-~vp~s~~~~~~l 93 (1081)
T KOG0618|consen 22 ALQILNLRR-----NSLLSRPLEFVEKRVKLKSLDLSNNQIS--SFPIQITLLSHLRQLNLSRNYIR-SVPSSCSNMRNL 93 (1081)
T ss_pred HHHhhhccc-----cccccCchHHhhheeeeEEeeccccccc--cCCchhhhHHHHhhcccchhhHh-hCchhhhhhhcc
Confidence 466677766 2221111123444445999999999998 58889999999999999999998 788999999999
Q ss_pred ceecccCccCCCCCCcccccCCCCCcEEecCCCCCCCCchhHHhhcCCCCCCEEEccCCCCCCCCCccccccccCCCCCE
Q 048006 139 QHLDLGSNYLFSTGNLDWLSHLSYLRYLNLDESNLANSSDWFQVIGKLHSLKTLSLHSCYLPPVIPLSLNHLNSSTSLET 218 (833)
Q Consensus 139 ~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~ 218 (833)
++|.|.+|.+. ..+..+..+++|++|++++|.+.. +|..+..++.+..+..++|......+. ..++.
T Consensus 94 ~~lnL~~n~l~--~lP~~~~~lknl~~LdlS~N~f~~---~Pl~i~~lt~~~~~~~s~N~~~~~lg~--------~~ik~ 160 (1081)
T KOG0618|consen 94 QYLNLKNNRLQ--SLPASISELKNLQYLDLSFNHFGP---IPLVIEVLTAEEELAASNNEKIQRLGQ--------TSIKK 160 (1081)
T ss_pred hhheeccchhh--cCchhHHhhhcccccccchhccCC---CchhHHhhhHHHHHhhhcchhhhhhcc--------ccchh
Confidence 99999999986 677889999999999999999987 566788888999999999833332222 44888
Q ss_pred EEccCCcCCCCCCCcccccccCCcEEEccCccccccccccccCCCCCcEEECcCCcccccccccccCCCCCcEEEccCCC
Q 048006 219 LVLSDNNLTSSIYPWLPNISSIFISIDLGFNQLQGSIPESFQHMVYLEHLRLSFNELEGGIPKFFGNMCSLITLNLSNNK 298 (833)
Q Consensus 219 L~Ls~n~l~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~ 298 (833)
+++..|.+.+.++..+..+.. .|+|.+|.+.. ..+..+.+|+.|....|++... --.-++|+.|+.++|.
T Consensus 161 ~~l~~n~l~~~~~~~i~~l~~---~ldLr~N~~~~---~dls~~~~l~~l~c~rn~ls~l----~~~g~~l~~L~a~~n~ 230 (1081)
T KOG0618|consen 161 LDLRLNVLGGSFLIDIYNLTH---QLDLRYNEMEV---LDLSNLANLEVLHCERNQLSEL----EISGPSLTALYADHNP 230 (1081)
T ss_pred hhhhhhhcccchhcchhhhhe---eeecccchhhh---hhhhhccchhhhhhhhcccceE----EecCcchheeeeccCc
Confidence 999999999888888777644 69999999982 3567888999999999988742 2245789999999999
Q ss_pred CCchhhHHHhhcCCccccCCccEEEcccccccccChhhhcCCCCCCEEECcCCccccccCCCccCCccccEEEccCccCC
Q 048006 299 LSGQLSEIIQNLSSGCLENSLKSLYLENSLTGVISESFFSNISNLKELHLANNPLVLKLSHDWVPPFQLIIISLSSCKIG 378 (833)
Q Consensus 299 l~~~~~~~l~~l~~~~~~~~L~~L~L~~~~~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~~~l~ 378 (833)
++...+. ..+.+|+.++++.+....+| +++..+.+|+.++..+|.+ ...+.......+|+.|.+..|.+.
T Consensus 231 l~~~~~~--------p~p~nl~~~dis~n~l~~lp-~wi~~~~nle~l~~n~N~l-~~lp~ri~~~~~L~~l~~~~nel~ 300 (1081)
T KOG0618|consen 231 LTTLDVH--------PVPLNLQYLDISHNNLSNLP-EWIGACANLEALNANHNRL-VALPLRISRITSLVSLSAAYNELE 300 (1081)
T ss_pred ceeeccc--------cccccceeeecchhhhhcch-HHHHhcccceEecccchhH-HhhHHHHhhhhhHHHHHhhhhhhh
Confidence 8733321 12338999999999999999 6899999999999999998 455666777788888888888887
Q ss_pred CCCChhhcccccccEEeecCCccccccchhHHhhcccccEEEcccccccccCCccccccCCCCCceecccCcccccCCCC
Q 048006 379 PHFPKWLQTQNQIELLDISNTGISDTIPDWFWNLSNKFSFLDLASNQIKGKLPNLSSRFGTSNPGIDISSNHFEGLIPPL 458 (833)
Q Consensus 379 ~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~~l~~l~l~~n~l~~~~~~~ 458 (833)
.+|.....++.|++|+|..|++....+..+.....++..++.+.|++.. .|...
T Consensus 301 -yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~-lp~~~------------------------ 354 (1081)
T KOG0618|consen 301 -YIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLST-LPSYE------------------------ 354 (1081)
T ss_pred -hCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccc-ccccc------------------------
Confidence 5666677788888888888888744333333222235555555555441 11000
Q ss_pred CCCCceeecCCCcccccccccccccCCcccEEEcCCCcCcCCCCCcccCCCCCcEEEccCCcccccCCCCccCcCCccEE
Q 048006 459 PSNSSFLNLSKNRFSGSISFLCSISGSKLTYVDLSSNLLSGKLPDCWWTFDSLVILNLENNSFSGRIPDSMGFLQNIQTL 538 (833)
Q Consensus 459 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 538 (833)
....+.|+.|++.+|.+++.....+.++..|+.|+|++|++.......+.++..|+.|
T Consensus 355 ----------------------e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL 412 (1081)
T KOG0618|consen 355 ----------------------ENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEEL 412 (1081)
T ss_pred ----------------------chhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHH
Confidence 0002445555555555555554555555555555555555553333344555555555
Q ss_pred EcccCcCccccCccccCCCCCcEeccCCCccCCCCCcchhhcCCccceEEecCCccccc-ccccccCCCCCCEEeccCCc
Q 048006 539 SLHNNRLTGELSSSFRNCSQLRLLDLGKNALYGEIPTWMGESLSNLIVLSLKSNKFHGK-IPFQLCQLAFLQVLDLSLNN 617 (833)
Q Consensus 539 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~-~~~~l~~l~~L~~L~Ls~N~ 617 (833)
+||+|+++ .+|.....++.|++|...+|.+. .+| .+. .++.|+.+|++.|+++.. +|... ..++|++||+++|.
T Consensus 413 ~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~-~l~qL~~lDlS~N~L~~~~l~~~~-p~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 413 NLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELA-QLPQLKVLDLSCNNLSEVTLPEAL-PSPNLKYLDLSGNT 487 (1081)
T ss_pred hcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhh-hcCcceEEecccchhhhhhhhhhC-CCcccceeeccCCc
Confidence 55555555 34455555555555555555555 555 222 355555555555555522 22221 12555555555554
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.97 E-value=5e-33 Score=287.44 Aligned_cols=369 Identities=27% Similarity=0.398 Sum_probs=247.2
Q ss_pred CCCCCCEEeCCCCCCCCCCccccccCCCCCCEEEccCCCCCCCCCcccCCccccceecccCccCCCCCCcccccCCCCCc
Q 048006 85 KLHDLRHLNLSFNDFSGSPIPEFIGSLSKLRYLDLFGTVFAGPIPPQLGNLSRLQHLDLGSNYLFSTGNLDWLSHLSYLR 164 (833)
Q Consensus 85 ~l~~L~~L~Ls~n~~~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~ 164 (833)
-++..|-.|+++|.++|..+|.....+++++.|.|...++. .+|+.++.|.+|++|.+++|++..
T Consensus 5 VLpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~~-------------- 69 (1255)
T KOG0444|consen 5 VLPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLIS-------------- 69 (1255)
T ss_pred ccceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhHh--------------
Confidence 35567788999999998889999999999999999998887 789999999999999888887642
Q ss_pred EEecCCCCCCCCchhHHhhcCCCCCCEEEccCCCCCC-CCCccccccccCCCCCEEEccCCcCCCCCCCcccccccCCcE
Q 048006 165 YLNLDESNLANSSDWFQVIGKLHSLKTLSLHSCYLPP-VIPLSLNHLNSSTSLETLVLSDNNLTSSIYPWLPNISSIFIS 243 (833)
Q Consensus 165 ~L~Ls~n~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~-~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~~L~~ 243 (833)
+...++.++.|+.+.+..|++.. -+|. .++.. ..|+.||||+|++. ..|..+....+ +..
T Consensus 70 --------------vhGELs~Lp~LRsv~~R~N~LKnsGiP~--diF~l-~dLt~lDLShNqL~-EvP~~LE~AKn-~iV 130 (1255)
T KOG0444|consen 70 --------------VHGELSDLPRLRSVIVRDNNLKNSGIPT--DIFRL-KDLTILDLSHNQLR-EVPTNLEYAKN-SIV 130 (1255)
T ss_pred --------------hhhhhccchhhHHHhhhccccccCCCCc--hhccc-ccceeeecchhhhh-hcchhhhhhcC-cEE
Confidence 22344455555555555554421 2333 33333 55555555555554 23444444444 455
Q ss_pred EEccCccccccccccccCCCCCcEEECcCCcccccccccccCCCCCcEEEccCCCCCchhhHHHhhcCCccccCCccEEE
Q 048006 244 IDLGFNQLQGSIPESFQHMVYLEHLRLSFNELEGGIPKFFGNMCSLITLNLSNNKLSGQLSEIIQNLSSGCLENSLKSLY 323 (833)
Q Consensus 244 L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~~~~~~L~~L~ 323 (833)
|+||+|+|..+.-.-|-+++.|-.|||++|++. .+|..+..+..|++|+|++|.+.
T Consensus 131 LNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~----------------------- 186 (1255)
T KOG0444|consen 131 LNLSYNNIETIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLN----------------------- 186 (1255)
T ss_pred EEcccCccccCCchHHHhhHhHhhhccccchhh-hcCHHHHHHhhhhhhhcCCChhh-----------------------
Confidence 555555555332223345555555555555554 23444445555555555555432
Q ss_pred cccccccccChhhhcCCCCCCEEECcCCccccccCCCccCCccccEEEccCccCCCCCChhhcccccccEEeecCCcccc
Q 048006 324 LENSLTGVISESFFSNISNLKELHLANNPLVLKLSHDWVPPFQLIIISLSSCKIGPHFPKWLQTQNQIELLDISNTGISD 403 (833)
Q Consensus 324 L~~~~~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~n~i~~ 403 (833)
...-..+..+++|++|.+++.+-+. .-+|..+..+.+|..+|+|.|.+.
T Consensus 187 -------hfQLrQLPsmtsL~vLhms~TqRTl-----------------------~N~Ptsld~l~NL~dvDlS~N~Lp- 235 (1255)
T KOG0444|consen 187 -------HFQLRQLPSMTSLSVLHMSNTQRTL-----------------------DNIPTSLDDLHNLRDVDLSENNLP- 235 (1255)
T ss_pred -------HHHHhcCccchhhhhhhcccccchh-----------------------hcCCCchhhhhhhhhccccccCCC-
Confidence 1111123345556666666543321 145666667777777777777765
Q ss_pred ccchhHHhhcccccEEEcccccccccCCccccccCCCCCceecccCcccccCCCCCCCCceeecCCCccccccccccccc
Q 048006 404 TIPDWFWNLSNKFSFLDLASNQIKGKLPNLSSRFGTSNPGIDISSNHFEGLIPPLPSNSSFLNLSKNRFSGSISFLCSIS 483 (833)
Q Consensus 404 ~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~ 483 (833)
..|+.+..+. +|+.|+|++|+|+..--. . ..
T Consensus 236 ~vPecly~l~-~LrrLNLS~N~iteL~~~----------------------------------------------~--~~ 266 (1255)
T KOG0444|consen 236 IVPECLYKLR-NLRRLNLSGNKITELNMT----------------------------------------------E--GE 266 (1255)
T ss_pred cchHHHhhhh-hhheeccCcCceeeeecc----------------------------------------------H--HH
Confidence 5666666554 566666666666521000 0 00
Q ss_pred CCcccEEEcCCCcCcCCCCCcccCCCCCcEEEccCCccc-ccCCCCccCcCCccEEEcccCcCccccCccccCCCCCcEe
Q 048006 484 GSKLTYVDLSSNLLSGKLPDCWWTFDSLVILNLENNSFS-GRIPDSMGFLQNIQTLSLHNNRLTGELSSSFRNCSQLRLL 562 (833)
Q Consensus 484 ~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 562 (833)
..+|++|++|.|+++ .+|+++..++.|+.|.+.+|+++ .-+|..++.+.+|+.+...+|.+. ..|++++.|.+|+.|
T Consensus 267 W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL 344 (1255)
T KOG0444|consen 267 WENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKL 344 (1255)
T ss_pred Hhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHh
Confidence 367888999999998 78999999999999999999876 357888999999999999999988 789999999999999
Q ss_pred ccCCCccCCCCCcchhhcCCccceEEecCCccc
Q 048006 563 DLGKNALYGEIPTWMGESLSNLIVLSLKSNKFH 595 (833)
Q Consensus 563 ~L~~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~ 595 (833)
.|+.|++. .+|+.+. -++.|+.||+..|.-.
T Consensus 345 ~L~~NrLi-TLPeaIH-lL~~l~vLDlreNpnL 375 (1255)
T KOG0444|consen 345 KLDHNRLI-TLPEAIH-LLPDLKVLDLRENPNL 375 (1255)
T ss_pred ccccccee-echhhhh-hcCCcceeeccCCcCc
Confidence 99999998 8999887 5899999999999644
No 10
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.97 E-value=1.2e-32 Score=284.71 Aligned_cols=380 Identities=25% Similarity=0.358 Sum_probs=228.5
Q ss_pred EEEccCcccc-ccccccccCCCCCcEEECcCCcccccccccccCCCCCcEEEccCCCCCchhhHHHhhcCCccccCCccE
Q 048006 243 SIDLGFNQLQ-GSIPESFQHMVYLEHLRLSFNELEGGIPKFFGNMCSLITLNLSNNKLSGQLSEIIQNLSSGCLENSLKS 321 (833)
Q Consensus 243 ~L~Ls~n~l~-~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~~~~~~L~~ 321 (833)
-.|+++|.++ +..|.....++.++.|.|...++. .+|+.++.+.+|++|.+++|++..... .+
T Consensus 11 GvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~~vhG-EL-------------- 74 (1255)
T KOG0444|consen 11 GVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLISVHG-EL-------------- 74 (1255)
T ss_pred cccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhHhhhh-hh--------------
Confidence 3344444444 234455555555555555555554 355555555555555555555442211 11
Q ss_pred EEcccccccccChhhhcCCCCCCEEECcCCcccc-ccCCCccCCccccEEEccCccCCCCCChhhcccccccEEeecCCc
Q 048006 322 LYLENSLTGVISESFFSNISNLKELHLANNPLVL-KLSHDWVPPFQLIIISLSSCKIGPHFPKWLQTQNQIELLDISNTG 400 (833)
Q Consensus 322 L~L~~~~~~~i~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~n~ 400 (833)
..++.|+.+.+..|++.. -+|.++..+..|++|+|++|+++ ..|..+...+++-.|+||+|.
T Consensus 75 ----------------s~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~ 137 (1255)
T KOG0444|consen 75 ----------------SDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNN 137 (1255)
T ss_pred ----------------ccchhhHHHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCc
Confidence 222233333333333221 11222223333333333333333 556666666777777777777
Q ss_pred cccccchhHHhhcccccEEEcccccccccCCccccccCCCCCceecccCcccccCCCCCCCCceeecCCCcccccccccc
Q 048006 401 ISDTIPDWFWNLSNKFSFLDLASNQIKGKLPNLSSRFGTSNPGIDISSNHFEGLIPPLPSNSSFLNLSKNRFSGSISFLC 480 (833)
Q Consensus 401 i~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~ 480 (833)
|. .+|..++-....|-+|||++|++....|.. ..
T Consensus 138 Ie-tIPn~lfinLtDLLfLDLS~NrLe~LPPQ~--RR------------------------------------------- 171 (1255)
T KOG0444|consen 138 IE-TIPNSLFINLTDLLFLDLSNNRLEMLPPQI--RR------------------------------------------- 171 (1255)
T ss_pred cc-cCCchHHHhhHhHhhhccccchhhhcCHHH--HH-------------------------------------------
Confidence 76 334333322235556666666655333322 00
Q ss_pred cccCCcccEEEcCCCcCcCCCCCcccCCCCCcEEEccCCccc-ccCCCCccCcCCccEEEcccCcCccccCccccCCCCC
Q 048006 481 SISGSKLTYVDLSSNLLSGKLPDCWWTFDSLVILNLENNSFS-GRIPDSMGFLQNIQTLSLHNNRLTGELSSSFRNCSQL 559 (833)
Q Consensus 481 ~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 559 (833)
+..|++|+|++|.+...--..+..+++|+.|.+++.+-+ .-+|.++..+.+|..+|+|.|.+. ..|+.+.++++|
T Consensus 172 ---L~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~L 247 (1255)
T KOG0444|consen 172 ---LSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNL 247 (1255)
T ss_pred ---HhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhh
Confidence 245667777777665333334455677888888876543 356778888888888888888887 778888888888
Q ss_pred cEeccCCCccCCCCCcchhhcCCccceEEecCCcccccccccccCCCCCCEEeccCCcCcc-cCCccccccccccccCCC
Q 048006 560 RLLDLGKNALYGEIPTWMGESLSNLIVLSLKSNKFHGKIPFQLCQLAFLQVLDLSLNNISG-KIPKCFNNFTAMTQERSS 638 (833)
Q Consensus 560 ~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~-~~p~~~~~l~~L~~l~~~ 638 (833)
+.|+||+|+|+ .+..... ...+|++|+++.|+++ .+|..++.++.|+.|.+.+|+++- -+|..++.+..|
T Consensus 248 rrLNLS~N~it-eL~~~~~-~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~L------ 318 (1255)
T KOG0444|consen 248 RRLNLSGNKIT-ELNMTEG-EWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQL------ 318 (1255)
T ss_pred heeccCcCcee-eeeccHH-HHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhh------
Confidence 88888888887 5655555 3567888888888887 678888888888888888887753 356666666555
Q ss_pred CcccccceEEeeccCcchhccccCcccEEEccCCcCCCCCchhhhcccCCcEEECCCccccccCCcccCCCCCCCEEeCC
Q 048006 639 DPTIKDKLMLTWKGSEREYRSTLGLVKSLELSNNNLNGAVPEEIMDLVGLVALNLSKNHLTGQISPKIGQLKSLDFLDLS 718 (833)
Q Consensus 639 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls 718 (833)
+.+..++|.+. ..|+.+..|..|+.|.|++|++. ..|+++.-++.|+.||+.
T Consensus 319 --------------------------evf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlr 370 (1255)
T KOG0444|consen 319 --------------------------EVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLR 370 (1255)
T ss_pred --------------------------HHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeecc
Confidence 66677777776 77888888888888888888877 677788778888888888
Q ss_pred CCcCcccCCccccCCCCCCEEECc
Q 048006 719 RNQLVGGIPSSLSQLSGLSVMDLS 742 (833)
Q Consensus 719 ~N~l~~~~p~~l~~l~~L~~L~ls 742 (833)
.|.-.-..|.--..-+.|+.-++.
T Consensus 371 eNpnLVMPPKP~da~~~lefYNID 394 (1255)
T KOG0444|consen 371 ENPNLVMPPKPNDARKKLEFYNID 394 (1255)
T ss_pred CCcCccCCCCcchhhhcceeeecc
Confidence 877553333322222455544443
No 11
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.92 E-value=9.1e-27 Score=229.76 Aligned_cols=98 Identities=21% Similarity=0.179 Sum_probs=87.6
Q ss_pred cccccccccccCCcccEEEcCCCcCcCCCCCcccCCCCCcEEEccCCcccccCCCCccCcCCccEEEcccCcCccccCcc
Q 048006 473 SGSISFLCSISGSKLTYVDLSSNLLSGKLPDCWWTFDSLVILNLENNSFSGRIPDSMGFLQNIQTLSLHNNRLTGELSSS 552 (833)
Q Consensus 473 ~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 552 (833)
.+.-|..++.++++|++|++++|+++++-+.+|.+...+++|.|..|++...-...|.++..|++|+|.+|+|+...|.+
T Consensus 262 d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~a 341 (498)
T KOG4237|consen 262 DSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGA 341 (498)
T ss_pred CCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEeccc
Confidence 33455666667899999999999999999999999999999999999999777788999999999999999999999999
Q ss_pred ccCCCCCcEeccCCCccC
Q 048006 553 FRNCSQLRLLDLGKNALY 570 (833)
Q Consensus 553 ~~~l~~L~~L~L~~n~l~ 570 (833)
|..+.+|..|++-.|++-
T Consensus 342 F~~~~~l~~l~l~~Np~~ 359 (498)
T KOG4237|consen 342 FQTLFSLSTLNLLSNPFN 359 (498)
T ss_pred ccccceeeeeehccCccc
Confidence 999999999999998765
No 12
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.89 E-value=1.4e-21 Score=239.23 Aligned_cols=341 Identities=22% Similarity=0.228 Sum_probs=217.7
Q ss_pred cccccCCCCCcEEEccCCCC------CchhhHHHhhcCCccccCCccEEEcccccccccChhhhcCCCCCCEEECcCCcc
Q 048006 280 PKFFGNMCSLITLNLSNNKL------SGQLSEIIQNLSSGCLENSLKSLYLENSLTGVISESFFSNISNLKELHLANNPL 353 (833)
Q Consensus 280 p~~l~~l~~L~~L~Ls~n~l------~~~~~~~l~~l~~~~~~~~L~~L~L~~~~~~~i~~~~~~~l~~L~~L~L~~n~l 353 (833)
+.+|..+++|+.|.+..+.. ...+|..+..++. +|+.|++.++....+|.. | ...+|++|++.+|.+
T Consensus 551 ~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~-----~Lr~L~~~~~~l~~lP~~-f-~~~~L~~L~L~~s~l 623 (1153)
T PLN03210 551 ENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPP-----KLRLLRWDKYPLRCMPSN-F-RPENLVKLQMQGSKL 623 (1153)
T ss_pred HHHHhcCccccEEEEecccccccccceeecCcchhhcCc-----ccEEEEecCCCCCCCCCc-C-CccCCcEEECcCccc
Confidence 34577788888888765532 2234555555442 677777777777777763 3 467788888887776
Q ss_pred ccccCCCccCCccccEEEccCccCCCCCChhhcccccccEEeecCCccccccchhHHhhcccccEEEcccccccccCCcc
Q 048006 354 VLKLSHDWVPPFQLIIISLSSCKIGPHFPKWLQTQNQIELLDISNTGISDTIPDWFWNLSNKFSFLDLASNQIKGKLPNL 433 (833)
Q Consensus 354 ~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~ 433 (833)
.. .+..+..+++|+.|+++++.....+|. +..+++|+.|++++|.....+|..+..+. +|+.|++++|...+.+|..
T Consensus 624 ~~-L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~-~L~~L~L~~c~~L~~Lp~~ 700 (1153)
T PLN03210 624 EK-LWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLN-KLEDLDMSRCENLEILPTG 700 (1153)
T ss_pred cc-cccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccC-CCCEEeCCCCCCcCccCCc
Confidence 53 344556667777777776654445553 56667777777777655555565554443 5555555554332222211
Q ss_pred ccccCCCCCceecccCcccccCCCCCCCCceeecCCCcccccccccccccCCcccEEEcCCCcCcCCCCCcccCCCCCcE
Q 048006 434 SSRFGTSNPGIDISSNHFEGLIPPLPSNSSFLNLSKNRFSGSISFLCSISGSKLTYVDLSSNLLSGKLPDCWWTFDSLVI 513 (833)
Q Consensus 434 ~~~~~~~l~~l~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~ 513 (833)
. .+++|+.|++++|.....+|.. ..+|+.
T Consensus 701 ----------------------------------------------i--~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~ 729 (1153)
T PLN03210 701 ----------------------------------------------I--NLKSLYRLNLSGCSRLKSFPDI---STNISW 729 (1153)
T ss_pred ----------------------------------------------C--CCCCCCEEeCCCCCCccccccc---cCCcCe
Confidence 0 1366777777777655455532 357888
Q ss_pred EEccCCcccccCCCCccCcCCccEEEcccCcCc-------cccCccccCCCCCcEeccCCCccCCCCCcchhhcCCccce
Q 048006 514 LNLENNSFSGRIPDSMGFLQNIQTLSLHNNRLT-------GELSSSFRNCSQLRLLDLGKNALYGEIPTWMGESLSNLIV 586 (833)
Q Consensus 514 L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~-------~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~ 586 (833)
|++++|.+. .+|..+ .+++|++|.+.++... ...+..+...++|+.|++++|...+.+|..+. ++++|+.
T Consensus 730 L~L~~n~i~-~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~-~L~~L~~ 806 (1153)
T PLN03210 730 LDLDETAIE-EFPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQ-NLHKLEH 806 (1153)
T ss_pred eecCCCccc-cccccc-cccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhh-CCCCCCE
Confidence 888888876 455544 4677888877764322 11122223345777777777776667777665 5777777
Q ss_pred EEecCCcccccccccccCCCCCCEEeccCCcCcccCCccccccccccccCCCCcccccceEEeeccCcchhccccCcccE
Q 048006 587 LSLKSNKFHGKIPFQLCQLAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKDKLMLTWKGSEREYRSTLGLVKS 666 (833)
Q Consensus 587 L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 666 (833)
|++++|...+.+|..+ .+++|+.|++++|.....+|.. .++++.
T Consensus 807 L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~-----------------------------------~~nL~~ 850 (1153)
T PLN03210 807 LEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI-----------------------------------STNISD 850 (1153)
T ss_pred EECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc-----------------------------------ccccCE
Confidence 7777775544566554 5777777777776544333321 234578
Q ss_pred EEccCCcCCCCCchhhhcccCCcEEECCCccccccCCcccCCCCCCCEEeCCCCc
Q 048006 667 LELSNNNLNGAVPEEIMDLVGLVALNLSKNHLTGQISPKIGQLKSLDFLDLSRNQ 721 (833)
Q Consensus 667 L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~ 721 (833)
|+|++|.++ .+|..+..+++|++|+|++|+--..+|..+..+++|+.|++++|.
T Consensus 851 L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 851 LNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred eECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCc
Confidence 888888887 678888888888888888854333577778888888888888886
No 13
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.88 E-value=2.6e-24 Score=212.51 Aligned_cols=282 Identities=25% Similarity=0.235 Sum_probs=144.3
Q ss_pred CcccEEEcCCCcCcCCCCCcccCCCCCcEEEccCCcccccCCCCccCcCCccEEEccc-CcCccccCccccCCCCCcEec
Q 048006 485 SKLTYVDLSSNLLSGKLPDCWWTFDSLVILNLENNSFSGRIPDSMGFLQNIQTLSLHN-NRLTGELSSSFRNCSQLRLLD 563 (833)
Q Consensus 485 ~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~ 563 (833)
+.-+.++|..|+|+.+.+.+|..+++|+.|||++|.|+.+-|++|.++++|..|.+.+ |+|+......|.++.+|+.|.
T Consensus 67 ~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLl 146 (498)
T KOG4237|consen 67 PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLL 146 (498)
T ss_pred CcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHh
Confidence 3455666666666666666677777777777777777766677777776666665555 666666666677777777777
Q ss_pred cCCCccCCCCCcchhhcCCccceEEecCCcccccccccccCCCCCCEEeccCCcCcc------------cCCcccccccc
Q 048006 564 LGKNALYGEIPTWMGESLSNLIVLSLKSNKFHGKIPFQLCQLAFLQVLDLSLNNISG------------KIPKCFNNFTA 631 (833)
Q Consensus 564 L~~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~------------~~p~~~~~l~~ 631 (833)
+.-|++. -++...+..++++..|.+..|.+...-...+..+.+++.+.+..|++.. ..|..++....
T Consensus 147 lNan~i~-Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc 225 (498)
T KOG4237|consen 147 LNANHIN-CIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARC 225 (498)
T ss_pred cChhhhc-chhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhccccee
Confidence 7777766 5555555566777777777776663333356666677777776666321 11111111111
Q ss_pred ccccCCCCcccccceEEeeccCcchhccccCcccEEEccCCcCCCCCc-hhhhcccCCcEEECCCccccccCCcccCCCC
Q 048006 632 MTQERSSDPTIKDKLMLTWKGSEREYRSTLGLVKSLELSNNNLNGAVP-EEIMDLVGLVALNLSKNHLTGQISPKIGQLK 710 (833)
Q Consensus 632 L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p-~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~ 710 (833)
.....+....+... ....+......+.+=..+.+...+..| ..|..+++|+.|+|++|+++++-+.+|.++.
T Consensus 226 ~~p~rl~~~Ri~q~-------~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a 298 (498)
T KOG4237|consen 226 VSPYRLYYKRINQE-------DARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAA 298 (498)
T ss_pred cchHHHHHHHhccc-------chhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchh
Confidence 11000000000000 000000000011111111222222222 2455555555555555555555555555555
Q ss_pred CCCEEeCCCCcCcccCCccccCCCCCCEEECcCCcCccCCCCc-cccCccccccccCCCCCCCCC
Q 048006 711 SLDFLDLSRNQLVGGIPSSLSQLSGLSVMDLSYNNLSGKIPTV-TQLQSFNDTVYAGNPELCGLP 774 (833)
Q Consensus 711 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~-~~~~~l~~~~~~gn~~lc~~~ 774 (833)
.++.|+|..|+|...--..|.++..|++|++.+|+|+..-|.. .....+..+.+.+|||.|+|.
T Consensus 299 ~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~ 363 (498)
T KOG4237|consen 299 ELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCR 363 (498)
T ss_pred hhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCccc
Confidence 5555555555555444455555555555555555555544422 122223344455566655554
No 14
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.87 E-value=4.2e-21 Score=234.94 Aligned_cols=339 Identities=19% Similarity=0.193 Sum_probs=242.3
Q ss_pred ChhhcccccccEEeecCCc------cccccchhHHhhcccccEEEcccccccccCCccccccCCCCCceecccCcccccC
Q 048006 382 PKWLQTQNQIELLDISNTG------ISDTIPDWFWNLSNKFSFLDLASNQIKGKLPNLSSRFGTSNPGIDISSNHFEGLI 455 (833)
Q Consensus 382 ~~~l~~l~~L~~L~Ls~n~------i~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~~l~~l~l~~n~l~~~~ 455 (833)
+.+|.++++|+.|.+..+. +...+|..+...+.+|+.|.+.++.+. .+|.. ....+|..|++.++.+....
T Consensus 551 ~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~--f~~~~L~~L~L~~s~l~~L~ 627 (1153)
T PLN03210 551 ENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSN--FRPENLVKLQMQGSKLEKLW 627 (1153)
T ss_pred HHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCc--CCccCCcEEECcCccccccc
Confidence 4456667777777775543 223456666666666777777777665 33432 23457777777777765432
Q ss_pred CC--CCCCCceeecCCCcccccccccccccCCcccEEEcCCCcCcCCCCCcccCCCCCcEEEccCCcccccCCCCccCcC
Q 048006 456 PP--LPSNSSFLNLSKNRFSGSISFLCSISGSKLTYVDLSSNLLSGKLPDCWWTFDSLVILNLENNSFSGRIPDSMGFLQ 533 (833)
Q Consensus 456 ~~--~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 533 (833)
.. .+.+|+.++++++.....+|.... +++|++|++++|.....+|..+..+++|+.|++++|...+.+|..+ +++
T Consensus 628 ~~~~~l~~Lk~L~Ls~~~~l~~ip~ls~--l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~ 704 (1153)
T PLN03210 628 DGVHSLTGLRNIDLRGSKNLKEIPDLSM--ATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLK 704 (1153)
T ss_pred cccccCCCCCEEECCCCCCcCcCCcccc--CCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCC
Confidence 22 256788888887765566665433 5888999998887666788888888899999998876555667655 688
Q ss_pred CccEEEcccCcCccccCccccCCCCCcEeccCCCccCCCCCcchhhcCCccceEEecCCccc-------ccccccccCCC
Q 048006 534 NIQTLSLHNNRLTGELSSSFRNCSQLRLLDLGKNALYGEIPTWMGESLSNLIVLSLKSNKFH-------GKIPFQLCQLA 606 (833)
Q Consensus 534 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~-------~~~~~~l~~l~ 606 (833)
+|++|++++|...+.+|.. .++|++|++++|.+. .+|..+ .+++|++|++.++... ...+......+
T Consensus 705 sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~-~lP~~~--~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~ 778 (1153)
T PLN03210 705 SLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIE-EFPSNL--RLENLDELILCEMKSEKLWERVQPLTPLMTMLSP 778 (1153)
T ss_pred CCCEEeCCCCCCccccccc---cCCcCeeecCCCccc-cccccc--cccccccccccccchhhccccccccchhhhhccc
Confidence 8899999888766566643 457888889888886 777765 3778888888764321 11122233456
Q ss_pred CCCEEeccCCcCcccCCccccccccccccCCCCcccccceEEeeccCcchhccccCcccEEEccCCcCCCCCchhhhccc
Q 048006 607 FLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKDKLMLTWKGSEREYRSTLGLVKSLELSNNNLNGAVPEEIMDLV 686 (833)
Q Consensus 607 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~ 686 (833)
+|+.|++++|...+.+|..++++++|+.++++++......+.. ..+++|+.|++++|.....+|.. .+
T Consensus 779 sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~---------~~L~sL~~L~Ls~c~~L~~~p~~---~~ 846 (1153)
T PLN03210 779 SLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTG---------INLESLESLDLSGCSRLRTFPDI---ST 846 (1153)
T ss_pred cchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCC---------CCccccCEEECCCCCcccccccc---cc
Confidence 7888888888877788888888888888888776432222111 14678899999998766566643 36
Q ss_pred CCcEEECCCccccccCCcccCCCCCCCEEeCCCCcCcccCCccccCCCCCCEEECcCCc
Q 048006 687 GLVALNLSKNHLTGQISPKIGQLKSLDFLDLSRNQLVGGIPSSLSQLSGLSVMDLSYNN 745 (833)
Q Consensus 687 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~ 745 (833)
+|++|+|++|.++ .+|.++..+++|+.|+|++|+-...+|..+..+++|+.+++++|.
T Consensus 847 nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 847 NISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred ccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCc
Confidence 7999999999998 689999999999999999966555688888999999999999985
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.85 E-value=6.2e-21 Score=215.60 Aligned_cols=262 Identities=29% Similarity=0.340 Sum_probs=152.8
Q ss_pred cccEEeecCCccccccchhHHhhcccccEEEcccccccccCCccccccCCCCCceecccCcccccCCCCCCCCceeecCC
Q 048006 390 QIELLDISNTGISDTIPDWFWNLSNKFSFLDLASNQIKGKLPNLSSRFGTSNPGIDISSNHFEGLIPPLPSNSSFLNLSK 469 (833)
Q Consensus 390 ~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~L~~L~l~~ 469 (833)
.-..|+++++.++ .+|..+. .+++.|++.+|+++. +| ..+++|+.|++++
T Consensus 202 ~~~~LdLs~~~Lt-sLP~~l~---~~L~~L~L~~N~Lt~-LP-------------------------~lp~~Lk~LdLs~ 251 (788)
T PRK15387 202 GNAVLNVGESGLT-TLPDCLP---AHITTLVIPDNNLTS-LP-------------------------ALPPELRTLEVSG 251 (788)
T ss_pred CCcEEEcCCCCCC-cCCcchh---cCCCEEEccCCcCCC-CC-------------------------CCCCCCcEEEecC
Confidence 3456777777776 4555443 256677777766663 33 2234445555555
Q ss_pred CcccccccccccccCCcccEEEcCCCcCcCCCCCcccCCCCCcEEEccCCcccccCCCCccCcCCccEEEcccCcCcccc
Q 048006 470 NRFSGSISFLCSISGSKLTYVDLSSNLLSGKLPDCWWTFDSLVILNLENNSFSGRIPDSMGFLQNIQTLSLHNNRLTGEL 549 (833)
Q Consensus 470 n~l~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 549 (833)
|+++.. |.. .++|+.|++++|.++. +|.. ..+|+.|++++|+++. +|. .+++|+.|++++|++++ +
T Consensus 252 N~LtsL-P~l----p~sL~~L~Ls~N~L~~-Lp~l---p~~L~~L~Ls~N~Lt~-LP~---~p~~L~~LdLS~N~L~~-L 317 (788)
T PRK15387 252 NQLTSL-PVL----PPGLLELSIFSNPLTH-LPAL---PSGLCKLWIFGNQLTS-LPV---LPPGLQELSVSDNQLAS-L 317 (788)
T ss_pred CccCcc-cCc----ccccceeeccCCchhh-hhhc---hhhcCEEECcCCcccc-ccc---cccccceeECCCCcccc-C
Confidence 544432 211 1455666666666552 2322 2345666666666653 332 23556666666666664 2
Q ss_pred CccccCCCCCcEeccCCCccCCCCCcchhhcCCccceEEecCCcccccccccccCCCCCCEEeccCCcCcccCCcccccc
Q 048006 550 SSSFRNCSQLRLLDLGKNALYGEIPTWMGESLSNLIVLSLKSNKFHGKIPFQLCQLAFLQVLDLSLNNISGKIPKCFNNF 629 (833)
Q Consensus 550 ~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l 629 (833)
|.. ..+|+.|++++|.++ .+|.. ..+|++|+|++|++++ +|.. ..+|+.|++++|++++ +|...
T Consensus 318 p~l---p~~L~~L~Ls~N~L~-~LP~l----p~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~~-LP~l~--- 381 (788)
T PRK15387 318 PAL---PSELCKLWAYNNQLT-SLPTL----PSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLTS-LPALP--- 381 (788)
T ss_pred CCC---cccccccccccCccc-ccccc----ccccceEecCCCccCC-CCCC---Ccccceehhhcccccc-Ccccc---
Confidence 321 134556666666665 45541 2456667777776663 3432 2456666677776652 33211
Q ss_pred ccccccCCCCcccccceEEeeccCcchhccccCcccEEEccCCcCCCCCchhhhcccCCcEEECCCccccccCCcccCCC
Q 048006 630 TAMTQERSSDPTIKDKLMLTWKGSEREYRSTLGLVKSLELSNNNLNGAVPEEIMDLVGLVALNLSKNHLTGQISPKIGQL 709 (833)
Q Consensus 630 ~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l 709 (833)
++|+.|++++|+|++ +|.. .++|+.|++++|++++ +|...
T Consensus 382 --------------------------------~~L~~LdLs~N~Lt~-LP~l---~s~L~~LdLS~N~Lss-IP~l~--- 421 (788)
T PRK15387 382 --------------------------------SGLKELIVSGNRLTS-LPVL---PSELKELMVSGNRLTS-LPMLP--- 421 (788)
T ss_pred --------------------------------cccceEEecCCcccC-CCCc---ccCCCEEEccCCcCCC-CCcch---
Confidence 234777788887773 5533 2567778888888773 55432
Q ss_pred CCCCEEeCCCCcCcccCCccccCCCCCCEEECcCCcCccCCCC
Q 048006 710 KSLDFLDLSRNQLVGGIPSSLSQLSGLSVMDLSYNNLSGKIPT 752 (833)
Q Consensus 710 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~ 752 (833)
.+|+.|++++|+|+ .+|..+.++++|+.|++++|+|+|.+|.
T Consensus 422 ~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~ 463 (788)
T PRK15387 422 SGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQ 463 (788)
T ss_pred hhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHH
Confidence 45677888888887 6777777888888888888888877664
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.85 E-value=6.6e-21 Score=215.43 Aligned_cols=267 Identities=27% Similarity=0.360 Sum_probs=177.6
Q ss_pred cccEEEccCccCCCCCChhhcccccccEEeecCCccccccchhHHhhcccccEEEcccccccccCCccccccCCCCCcee
Q 048006 366 QLIIISLSSCKIGPHFPKWLQTQNQIELLDISNTGISDTIPDWFWNLSNKFSFLDLASNQIKGKLPNLSSRFGTSNPGID 445 (833)
Q Consensus 366 ~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~~l~~l~ 445 (833)
.-..|+++.+.++ .+|..+. ++|+.|++++|+++. +|. ..++|++|++++|+++. +|.. ..+|+.|+
T Consensus 202 ~~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt~-LP~----lp~~Lk~LdLs~N~Lts-LP~l----p~sL~~L~ 268 (788)
T PRK15387 202 GNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLTS-LPA----LPPELRTLEVSGNQLTS-LPVL----PPGLLELS 268 (788)
T ss_pred CCcEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCCC-CCC----CCCCCcEEEecCCccCc-ccCc----ccccceee
Confidence 4567899999998 5676664 489999999999985 443 23579999999998873 3321 22444445
Q ss_pred cccCcccccCCCCCCCCceeecCCCcccccccccccccCCcccEEEcCCCcCcCCCCCcccCCCCCcEEEccCCcccccC
Q 048006 446 ISSNHFEGLIPPLPSNSSFLNLSKNRFSGSISFLCSISGSKLTYVDLSSNLLSGKLPDCWWTFDSLVILNLENNSFSGRI 525 (833)
Q Consensus 446 l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 525 (833)
++.|.+... |..+ .+|+.|++++|+++. +|. ..++|+.|++++|++++ +
T Consensus 269 Ls~N~L~~L-p~lp-------------------------~~L~~L~Ls~N~Lt~-LP~---~p~~L~~LdLS~N~L~~-L 317 (788)
T PRK15387 269 IFSNPLTHL-PALP-------------------------SGLCKLWIFGNQLTS-LPV---LPPGLQELSVSDNQLAS-L 317 (788)
T ss_pred ccCCchhhh-hhch-------------------------hhcCEEECcCCcccc-ccc---cccccceeECCCCcccc-C
Confidence 554444322 1122 456667777777663 333 23567777777777774 3
Q ss_pred CCCccCcCCccEEEcccCcCccccCccccCCCCCcEeccCCCccCCCCCcchhhcCCccceEEecCCcccccccccccCC
Q 048006 526 PDSMGFLQNIQTLSLHNNRLTGELSSSFRNCSQLRLLDLGKNALYGEIPTWMGESLSNLIVLSLKSNKFHGKIPFQLCQL 605 (833)
Q Consensus 526 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l 605 (833)
|.. ...|+.|++++|++++ +|.. ..+|++|++++|+++ .+|.. ..+|+.|++++|++++ +|.. .
T Consensus 318 p~l---p~~L~~L~Ls~N~L~~-LP~l---p~~Lq~LdLS~N~Ls-~LP~l----p~~L~~L~Ls~N~L~~-LP~l---~ 381 (788)
T PRK15387 318 PAL---PSELCKLWAYNNQLTS-LPTL---PSGLQELSVSDNQLA-SLPTL----PSELYKLWAYNNRLTS-LPAL---P 381 (788)
T ss_pred CCC---cccccccccccCcccc-cccc---ccccceEecCCCccC-CCCCC----Ccccceehhhcccccc-Cccc---c
Confidence 332 2356677777777764 4431 246778888888877 56652 3567777888888773 5543 3
Q ss_pred CCCCEEeccCCcCcccCCccccccccccccCCCCcccccceEEeeccCcchhccccCcccEEEccCCcCCCCCchhhhcc
Q 048006 606 AFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKDKLMLTWKGSEREYRSTLGLVKSLELSNNNLNGAVPEEIMDL 685 (833)
Q Consensus 606 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l 685 (833)
.+|+.|++++|++++ +|... +.|+.|++++|+++ .+|...
T Consensus 382 ~~L~~LdLs~N~Lt~-LP~l~-----------------------------------s~L~~LdLS~N~Ls-sIP~l~--- 421 (788)
T PRK15387 382 SGLKELIVSGNRLTS-LPVLP-----------------------------------SELKELMVSGNRLT-SLPMLP--- 421 (788)
T ss_pred cccceEEecCCcccC-CCCcc-----------------------------------cCCCEEEccCCcCC-CCCcch---
Confidence 467888888888763 44321 22477888888887 466533
Q ss_pred cCCcEEECCCccccccCCcccCCCCCCCEEeCCCCcCcccCCccccCC
Q 048006 686 VGLVALNLSKNHLTGQISPKIGQLKSLDFLDLSRNQLVGGIPSSLSQL 733 (833)
Q Consensus 686 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l 733 (833)
.+|+.|++++|+|+ .+|..+.++++|+.|+|++|++++..|..+..+
T Consensus 422 ~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L~~l 468 (788)
T PRK15387 422 SGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREI 468 (788)
T ss_pred hhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHHHHH
Confidence 35777888888887 678888888888888888888888877766443
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.79 E-value=3.4e-19 Score=203.20 Aligned_cols=204 Identities=25% Similarity=0.439 Sum_probs=98.0
Q ss_pred cccEEEcCCCcCcCCCCCcccCCCCCcEEEccCCcccccCCCCccCcCCccEEEcccCcCccccCccccCCCCCcEeccC
Q 048006 486 KLTYVDLSSNLLSGKLPDCWWTFDSLVILNLENNSFSGRIPDSMGFLQNIQTLSLHNNRLTGELSSSFRNCSQLRLLDLG 565 (833)
Q Consensus 486 ~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 565 (833)
+|++|++++|+++ .+|..+. .+|+.|+|++|.+. .+|..+. .+|+.|++++|+++ .+|..+. ++|+.|+++
T Consensus 221 nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls 291 (754)
T PRK15370 221 NIKTLYANSNQLT-SIPATLP--DTIQEMELSINRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVY 291 (754)
T ss_pred CCCEEECCCCccc-cCChhhh--ccccEEECcCCccC-cCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECC
Confidence 4555555555554 2333222 24555555555555 3333332 34555555555555 2333332 345555555
Q ss_pred CCccCCCCCcchhhcCCccceEEecCCcccccccccccCCCCCCEEeccCCcCcccCCccccccccccccCCCCcccccc
Q 048006 566 KNALYGEIPTWMGESLSNLIVLSLKSNKFHGKIPFQLCQLAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKDK 645 (833)
Q Consensus 566 ~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~ 645 (833)
+|+++ .+|..+. ++|+.|++++|+++. +|..+ .++|+.|++++|.+++ +|..+
T Consensus 292 ~N~Lt-~LP~~lp---~sL~~L~Ls~N~Lt~-LP~~l--~~sL~~L~Ls~N~Lt~-LP~~l------------------- 344 (754)
T PRK15370 292 DNSIR-TLPAHLP---SGITHLNVQSNSLTA-LPETL--PPGLKTLEAGENALTS-LPASL------------------- 344 (754)
T ss_pred CCccc-cCcccch---hhHHHHHhcCCcccc-CCccc--cccceeccccCCcccc-CChhh-------------------
Confidence 55555 4444322 245555555555552 33322 1455555555555542 33221
Q ss_pred eEEeeccCcchhccccCcccEEEccCCcCCCCCchhhhcccCCcEEECCCccccccCCcccCCCCCCCEEeCCCCcCccc
Q 048006 646 LMLTWKGSEREYRSTLGLVKSLELSNNNLNGAVPEEIMDLVGLVALNLSKNHLTGQISPKIGQLKSLDFLDLSRNQLVGG 725 (833)
Q Consensus 646 ~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ 725 (833)
+++|+.|++++|+++ .+|..+. +.|++|+|++|+++ .+|..+. ..|+.|++++|+++ .
T Consensus 345 ---------------~~sL~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~Lt-~LP~~l~--~sL~~LdLs~N~L~-~ 402 (754)
T PRK15370 345 ---------------PPELQVLDVSKNQIT-VLPETLP--PTITTLDVSRNALT-NLPENLP--AALQIMQASRNNLV-R 402 (754)
T ss_pred ---------------cCcccEEECCCCCCC-cCChhhc--CCcCEEECCCCcCC-CCCHhHH--HHHHHHhhccCCcc-c
Confidence 122355566666555 3444332 45566666666655 3444433 24556666666655 3
Q ss_pred CCccc----cCCCCCCEEECcCCcCc
Q 048006 726 IPSSL----SQLSGLSVMDLSYNNLS 747 (833)
Q Consensus 726 ~p~~l----~~l~~L~~L~ls~N~l~ 747 (833)
+|..+ ..++.+..+++.+|+++
T Consensus 403 LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 403 LPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred CchhHHHHhhcCCCccEEEeeCCCcc
Confidence 33332 22355556666666654
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.77 E-value=8.5e-19 Score=200.00 Aligned_cols=246 Identities=24% Similarity=0.372 Sum_probs=155.5
Q ss_pred cccEEeecCCccccccchhHHhhcccccEEEcccccccccCCccccccCCCCCceecccCcccccCCCCCCCCceeecCC
Q 048006 390 QIELLDISNTGISDTIPDWFWNLSNKFSFLDLASNQIKGKLPNLSSRFGTSNPGIDISSNHFEGLIPPLPSNSSFLNLSK 469 (833)
Q Consensus 390 ~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~L~~L~l~~ 469 (833)
+...|++++++++. +|..+. ..++.|++++|+++. +|. ..+.+|+.|++++
T Consensus 179 ~~~~L~L~~~~Lts-LP~~Ip---~~L~~L~Ls~N~Lts-LP~------------------------~l~~nL~~L~Ls~ 229 (754)
T PRK15370 179 NKTELRLKILGLTT-IPACIP---EQITTLILDNNELKS-LPE------------------------NLQGNIKTLYANS 229 (754)
T ss_pred CceEEEeCCCCcCc-CCcccc---cCCcEEEecCCCCCc-CCh------------------------hhccCCCEEECCC
Confidence 45677777777763 444332 357777777777663 332 1223455555555
Q ss_pred CcccccccccccccCCcccEEEcCCCcCcCCCCCcccCCCCCcEEEccCCcccccCCCCccCcCCccEEEcccCcCcccc
Q 048006 470 NRFSGSISFLCSISGSKLTYVDLSSNLLSGKLPDCWWTFDSLVILNLENNSFSGRIPDSMGFLQNIQTLSLHNNRLTGEL 549 (833)
Q Consensus 470 n~l~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 549 (833)
|+++.. |... ...|+.|++++|.+. .+|..+. .+|+.|++++|+++ .+|..+. ++|++|++++|++++ +
T Consensus 230 N~LtsL-P~~l---~~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~-L 298 (754)
T PRK15370 230 NQLTSI-PATL---PDTIQEMELSINRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIRT-L 298 (754)
T ss_pred CccccC-Chhh---hccccEEECcCCccC-cCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCcccc-C
Confidence 555432 2111 145777777777776 4455443 46777888877777 3555443 477888888887774 4
Q ss_pred CccccCCCCCcEeccCCCccCCCCCcchhhcCCccceEEecCCcccccccccccCCCCCCEEeccCCcCcccCCcccccc
Q 048006 550 SSSFRNCSQLRLLDLGKNALYGEIPTWMGESLSNLIVLSLKSNKFHGKIPFQLCQLAFLQVLDLSLNNISGKIPKCFNNF 629 (833)
Q Consensus 550 ~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l 629 (833)
|..+. ++|+.|++++|+++ .+|..+ .++|+.|++++|.+++ +|..+. ++|+.|++++|+++ .+|..+.
T Consensus 299 P~~lp--~sL~~L~Ls~N~Lt-~LP~~l---~~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~-~LP~~lp-- 366 (754)
T PRK15370 299 PAHLP--SGITHLNVQSNSLT-ALPETL---PPGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQIT-VLPETLP-- 366 (754)
T ss_pred cccch--hhHHHHHhcCCccc-cCCccc---cccceeccccCCcccc-CChhhc--CcccEEECCCCCCC-cCChhhc--
Confidence 44332 46778888888887 566543 3578888888888774 565553 67888888888876 3454321
Q ss_pred ccccccCCCCcccccceEEeeccCcchhccccCcccEEEccCCcCCCCCchhhhcccCCcEEECCCccccccCCccc---
Q 048006 630 TAMTQERSSDPTIKDKLMLTWKGSEREYRSTLGLVKSLELSNNNLNGAVPEEIMDLVGLVALNLSKNHLTGQISPKI--- 706 (833)
Q Consensus 630 ~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l--- 706 (833)
+.|+.|+|++|+++ .+|..+. ..|+.|++++|+++ .+|..+
T Consensus 367 --------------------------------~~L~~LdLs~N~Lt-~LP~~l~--~sL~~LdLs~N~L~-~LP~sl~~~ 410 (754)
T PRK15370 367 --------------------------------PTITTLDVSRNALT-NLPENLP--AALQIMQASRNNLV-RLPESLPHF 410 (754)
T ss_pred --------------------------------CCcCEEECCCCcCC-CCCHhHH--HHHHHHhhccCCcc-cCchhHHHH
Confidence 23478888888887 5666554 35778888888887 455543
Q ss_pred -CCCCCCCEEeCCCCcCc
Q 048006 707 -GQLKSLDFLDLSRNQLV 723 (833)
Q Consensus 707 -~~l~~L~~L~Ls~N~l~ 723 (833)
+.++.+..|++.+|+++
T Consensus 411 ~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 411 RGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred hhcCCCccEEEeeCCCcc
Confidence 33477788888888887
No 19
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.72 E-value=1.7e-18 Score=184.67 Aligned_cols=263 Identities=22% Similarity=0.253 Sum_probs=123.9
Q ss_pred EEeCCCCCCCCCCccccccCCCCCCEEEccCCCCCC----CCCcccCCccccceecccCccCCC--C---CCcccccCCC
Q 048006 91 HLNLSFNDFSGSPIPEFIGSLSKLRYLDLFGTVFAG----PIPPQLGNLSRLQHLDLGSNYLFS--T---GNLDWLSHLS 161 (833)
Q Consensus 91 ~L~Ls~n~~~~~~~p~~~~~l~~L~~L~Ls~n~l~~----~~p~~~~~l~~L~~L~Ls~n~~~~--~---~~~~~l~~l~ 161 (833)
.|+|.++.+++...+..+..+.+|++|+++++.++. .++..+...++|++|+++++.+.. . .....+.+++
T Consensus 2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~ 81 (319)
T cd00116 2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGC 81 (319)
T ss_pred ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcC
Confidence 355555666544455555556666666666666543 133444455556666666555421 0 0011233444
Q ss_pred CCcEEecCCCCCCCCchhHHhhcCC---CCCCEEEccCCCCCCCCCccccccccCCCCCEEEccCCcCCCCCCCccccc-
Q 048006 162 YLRYLNLDESNLANSSDWFQVIGKL---HSLKTLSLHSCYLPPVIPLSLNHLNSSTSLETLVLSDNNLTSSIYPWLPNI- 237 (833)
Q Consensus 162 ~L~~L~Ls~n~~~~~~~~~~~l~~l---~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l- 237 (833)
+|++|++++|.+... .+..+..+ ++|++|++++|.+.+.... .+...+...
T Consensus 82 ~L~~L~l~~~~~~~~--~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~-----------------------~l~~~l~~~~ 136 (319)
T cd00116 82 GLQELDLSDNALGPD--GCGVLESLLRSSSLQELKLNNNGLGDRGLR-----------------------LLAKGLKDLP 136 (319)
T ss_pred ceeEEEccCCCCChh--HHHHHHHHhccCcccEEEeeCCccchHHHH-----------------------HHHHHHHhCC
Confidence 555555555544421 12222222 2355555555544321000 011112222
Q ss_pred ccCCcEEEccCcccccc----ccccccCCCCCcEEECcCCccccc----ccccccCCCCCcEEEccCCCCCchhhHHHhh
Q 048006 238 SSIFISIDLGFNQLQGS----IPESFQHMVYLEHLRLSFNELEGG----IPKFFGNMCSLITLNLSNNKLSGQLSEIIQN 309 (833)
Q Consensus 238 ~~~L~~L~Ls~n~l~~~----~p~~~~~l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~ 309 (833)
++ |+.|++++|.+++. ++..+..++.|++|++++|.+++. ++..+..+++|++|++++|.+++.....+..
T Consensus 137 ~~-L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~ 215 (319)
T cd00116 137 PA-LEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAE 215 (319)
T ss_pred CC-ceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHH
Confidence 22 44555555554421 223444555666666666666531 2223344456666666666665433322221
Q ss_pred cCCccccCCccEEEcccccccccChhhhcCCCCCCEEECcCCccccccCCCcc-----CCccccEEEccCccCCC----C
Q 048006 310 LSSGCLENSLKSLYLENSLTGVISESFFSNISNLKELHLANNPLVLKLSHDWV-----PPFQLIIISLSSCKIGP----H 380 (833)
Q Consensus 310 l~~~~~~~~L~~L~L~~~~~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-----~~~~L~~L~L~~~~l~~----~ 380 (833)
.+..+++|++|++++|++.......+. ....|+.|++++|.++. .
T Consensus 216 --------------------------~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~ 269 (319)
T cd00116 216 --------------------------TLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKD 269 (319)
T ss_pred --------------------------HhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHH
Confidence 234455666666666655432111111 12455555555555541 2
Q ss_pred CChhhcccccccEEeecCCcccccc
Q 048006 381 FPKWLQTQNQIELLDISNTGISDTI 405 (833)
Q Consensus 381 ~~~~l~~l~~L~~L~Ls~n~i~~~~ 405 (833)
+...+..+++|+++++++|.++...
T Consensus 270 l~~~~~~~~~L~~l~l~~N~l~~~~ 294 (319)
T cd00116 270 LAEVLAEKESLLELDLRGNKFGEEG 294 (319)
T ss_pred HHHHHhcCCCccEEECCCCCCcHHH
Confidence 3334455567777777777776543
No 20
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.71 E-value=1.3e-18 Score=185.54 Aligned_cols=84 Identities=25% Similarity=0.319 Sum_probs=43.9
Q ss_pred cccEEEccCCcCCCCCchhhhc-----ccCCcEEECCCcccc----ccCCcccCCCCCCCEEeCCCCcCccc----CCcc
Q 048006 663 LVKSLELSNNNLNGAVPEEIMD-----LVGLVALNLSKNHLT----GQISPKIGQLKSLDFLDLSRNQLVGG----IPSS 729 (833)
Q Consensus 663 ~L~~L~Ls~n~l~~~~p~~l~~-----l~~L~~L~Ls~N~l~----~~~p~~l~~l~~L~~L~Ls~N~l~~~----~p~~ 729 (833)
+|+.|++++|.+++.....+.. .+.|++|++++|.++ ..+...+..+++|+.+++++|.++.. ....
T Consensus 222 ~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~ 301 (319)
T cd00116 222 SLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAES 301 (319)
T ss_pred CCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHH
Confidence 3456666666655432222221 256666666666665 12223344456666666666666643 2333
Q ss_pred ccCC-CCCCEEECcCCcC
Q 048006 730 LSQL-SGLSVMDLSYNNL 746 (833)
Q Consensus 730 l~~l-~~L~~L~ls~N~l 746 (833)
+... +.|+.+++.+|++
T Consensus 302 ~~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 302 LLEPGNELESLWVKDDSF 319 (319)
T ss_pred HhhcCCchhhcccCCCCC
Confidence 3333 4566666666653
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.70 E-value=3e-19 Score=156.43 Aligned_cols=183 Identities=30% Similarity=0.484 Sum_probs=130.8
Q ss_pred cCcCCccEEEcccCcCccccCccccCCCCCcEeccCCCccCCCCCcchhhcCCccceEEecCCcccccccccccCCCCCC
Q 048006 530 GFLQNIQTLSLHNNRLTGELSSSFRNCSQLRLLDLGKNALYGEIPTWMGESLSNLIVLSLKSNKFHGKIPFQLCQLAFLQ 609 (833)
Q Consensus 530 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~ 609 (833)
..+..++.|.|++|+++ .+|..+..+.+|+.|++++|++. .+|..+. .+++|+.|+++-|++. ..|..|+.++.|+
T Consensus 30 f~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~is-sl~klr~lnvgmnrl~-~lprgfgs~p~le 105 (264)
T KOG0617|consen 30 FNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSIS-SLPKLRILNVGMNRLN-ILPRGFGSFPALE 105 (264)
T ss_pred cchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhh-hchhhhheecchhhhh-cCccccCCCchhh
Confidence 34556667777777777 45556777777777777777776 7777766 5777777777777776 6777788888888
Q ss_pred EEeccCCcCcc-cCCccccccccccccCCCCcccccceEEeeccCcchhccccCcccEEEccCCcCCCCCchhhhcccCC
Q 048006 610 VLDLSLNNISG-KIPKCFNNFTAMTQERSSDPTIKDKLMLTWKGSEREYRSTLGLVKSLELSNNNLNGAVPEEIMDLVGL 688 (833)
Q Consensus 610 ~L~Ls~N~l~~-~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L 688 (833)
.|||++|++.. .+|..|..++.| +.|+|+.|.+. .+|..++++++|
T Consensus 106 vldltynnl~e~~lpgnff~m~tl--------------------------------ralyl~dndfe-~lp~dvg~lt~l 152 (264)
T KOG0617|consen 106 VLDLTYNNLNENSLPGNFFYMTTL--------------------------------RALYLGDNDFE-ILPPDVGKLTNL 152 (264)
T ss_pred hhhccccccccccCCcchhHHHHH--------------------------------HHHHhcCCCcc-cCChhhhhhcce
Confidence 88888887764 456666555555 67788888887 778888888888
Q ss_pred cEEECCCccccccCCcccCCCCCCCEEeCCCCcCcccCCccccCCC---CCCEEECcCCcCccCCC
Q 048006 689 VALNLSKNHLTGQISPKIGQLKSLDFLDLSRNQLVGGIPSSLSQLS---GLSVMDLSYNNLSGKIP 751 (833)
Q Consensus 689 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~---~L~~L~ls~N~l~g~ip 751 (833)
+.|.+..|.+- ..|..++.++.|++|++.+|+++ .+|..++++. +=+.+.+.+|++...|.
T Consensus 153 qil~lrdndll-~lpkeig~lt~lrelhiqgnrl~-vlppel~~l~l~~~k~v~r~E~NPwv~pIa 216 (264)
T KOG0617|consen 153 QILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLT-VLPPELANLDLVGNKQVMRMEENPWVNPIA 216 (264)
T ss_pred eEEeeccCchh-hCcHHHHHHHHHHHHhcccceee-ecChhhhhhhhhhhHHHHhhhhCCCCChHH
Confidence 88888888877 67888888888888888888887 5666666543 22344555666654443
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.70 E-value=3e-19 Score=156.44 Aligned_cols=181 Identities=29% Similarity=0.505 Sum_probs=160.6
Q ss_pred ccCCCCCcEeccCCCccCCCCCcchhhcCCccceEEecCCcccccccccccCCCCCCEEeccCCcCcccCCccccccccc
Q 048006 553 FRNCSQLRLLDLGKNALYGEIPTWMGESLSNLIVLSLKSNKFHGKIPFQLCQLAFLQVLDLSLNNISGKIPKCFNNFTAM 632 (833)
Q Consensus 553 ~~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L 632 (833)
+..+...+.|.+++|+++ .+|..+. .+.+|+.|++++|++. .+|.+++.++.|+.|+++-|++. ..|..|+.++.|
T Consensus 29 Lf~~s~ITrLtLSHNKl~-~vppnia-~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~l 104 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKLT-VVPPNIA-ELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPAL 104 (264)
T ss_pred ccchhhhhhhhcccCcee-ecCCcHH-Hhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchh
Confidence 446677889999999998 8999988 5999999999999998 78999999999999999999997 889999988877
Q ss_pred cccCCCCcccccceEEeeccCcchhccccCcccEEEccCCcCCC-CCchhhhcccCCcEEECCCccccccCCcccCCCCC
Q 048006 633 TQERSSDPTIKDKLMLTWKGSEREYRSTLGLVKSLELSNNNLNG-AVPEEIMDLVGLVALNLSKNHLTGQISPKIGQLKS 711 (833)
Q Consensus 633 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~-~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~ 711 (833)
+.|||++|++.. ..|..|..++.|+.|+|+.|.+. .+|..++++++
T Consensus 105 --------------------------------evldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~ 151 (264)
T KOG0617|consen 105 --------------------------------EVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTN 151 (264)
T ss_pred --------------------------------hhhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcc
Confidence 889999999864 68899999999999999999998 88999999999
Q ss_pred CCEEeCCCCcCcccCCccccCCCCCCEEECcCCcCccCCCCccccCccc---cccccCCCCCC
Q 048006 712 LDFLDLSRNQLVGGIPSSLSQLSGLSVMDLSYNNLSGKIPTVTQLQSFN---DTVYAGNPELC 771 (833)
Q Consensus 712 L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~l~---~~~~~gn~~lc 771 (833)
|+.|.+..|.+. .+|..++.++.|+.|.+.+|+++-.+|+.+++.-.. ....+.|||.-
T Consensus 152 lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~vlppel~~l~l~~~k~v~r~E~NPwv~ 213 (264)
T KOG0617|consen 152 LQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLTVLPPELANLDLVGNKQVMRMEENPWVN 213 (264)
T ss_pred eeEEeeccCchh-hCcHHHHHHHHHHHHhcccceeeecChhhhhhhhhhhHHHHhhhhCCCCC
Confidence 999999999998 789999999999999999999998888776655442 22367899864
No 23
>PLN03150 hypothetical protein; Provisional
Probab=99.54 E-value=2.7e-14 Score=163.19 Aligned_cols=130 Identities=36% Similarity=0.520 Sum_probs=110.3
Q ss_pred CCCCHHHHHHHHHhhhcCcCCCCCCCCCCCCCCCCCCC----cccceEecC--CC--CcEEEEECCCCCCCCCCcceecC
Q 048006 9 IRCIDEEREALLTFKASLVDESGVLSSWGPEDEKRDCC----KWTGLRCSN--KT--NHVILLDLQPIDFDSFPLRGTIS 80 (833)
Q Consensus 9 ~~~~~~~~~~ll~~k~~~~~~~~~~~~w~~~~~~~~~c----~w~gv~c~~--~~--~~v~~l~L~~~~~~~~~l~~~~~ 80 (833)
..+.++|..||+++|+++.++.. .+|. +..|| .|.||.|.. .. .+|+.|+|++ +.+.|.+|
T Consensus 367 ~~t~~~~~~aL~~~k~~~~~~~~--~~W~----g~~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~-----n~L~g~ip 435 (623)
T PLN03150 367 SKTLLEEVSALQTLKSSLGLPLR--FGWN----GDPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDN-----QGLRGFIP 435 (623)
T ss_pred cccCchHHHHHHHHHHhcCCccc--CCCC----CCCCCCcccccccceeeccCCCCceEEEEEECCC-----CCccccCC
Confidence 35677899999999999876532 4796 33443 799999952 22 2589999998 78899999
Q ss_pred ccccCCCCCCEEeCCCCCCCCCCccccccCCCCCCEEEccCCCCCCCCCcccCCccccceecccCccCCC
Q 048006 81 PALLKLHDLRHLNLSFNDFSGSPIPEFIGSLSKLRYLDLFGTVFAGPIPPQLGNLSRLQHLDLGSNYLFS 150 (833)
Q Consensus 81 ~~l~~l~~L~~L~Ls~n~~~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~~~~ 150 (833)
..+.++++|+.|+|++|.+++. +|..++.+++|++|+|++|.++|.+|..++++++|++|+|++|.+..
T Consensus 436 ~~i~~L~~L~~L~Ls~N~l~g~-iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g 504 (623)
T PLN03150 436 NDISKLRHLQSINLSGNSIRGN-IPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSG 504 (623)
T ss_pred HHHhCCCCCCEEECCCCcccCc-CChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccc
Confidence 9999999999999999999985 99999999999999999999999999999999999999999988764
No 24
>PLN03150 hypothetical protein; Provisional
Probab=99.52 E-value=5.4e-14 Score=160.71 Aligned_cols=116 Identities=39% Similarity=0.696 Sum_probs=104.6
Q ss_pred ccEEEccCCcCCCCCchhhhcccCCcEEECCCccccccCCcccCCCCCCCEEeCCCCcCcccCCccccCCCCCCEEECcC
Q 048006 664 VKSLELSNNNLNGAVPEEIMDLVGLVALNLSKNHLTGQISPKIGQLKSLDFLDLSRNQLVGGIPSSLSQLSGLSVMDLSY 743 (833)
Q Consensus 664 L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~ 743 (833)
++.|+|++|.+.|.+|..+..+++|+.|+|++|.++|.+|..++.+++|+.|||++|+++|.+|+.+.++++|+.|++++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 58899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcCccCCCCcc--ccCccccccccCCCCCCCCCCCCCC
Q 048006 744 NNLSGKIPTVT--QLQSFNDTVYAGNPELCGLPLPNKC 779 (833)
Q Consensus 744 N~l~g~ip~~~--~~~~l~~~~~~gn~~lc~~~~~~~c 779 (833)
|+++|.+|..- .+..+....+.||+++|+.+....|
T Consensus 500 N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~l~~C 537 (623)
T PLN03150 500 NSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRAC 537 (623)
T ss_pred CcccccCChHHhhccccCceEEecCCccccCCCCCCCC
Confidence 99999999752 2223445678999999987654556
No 25
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.33 E-value=4.1e-14 Score=147.34 Aligned_cols=195 Identities=27% Similarity=0.420 Sum_probs=131.4
Q ss_pred CCcccEEEcCCCcCcCCCCCcccCCCCCcEEEccCCcccccCCCCccCcCCccEEEcccCcCccccCccccCCCCCcEec
Q 048006 484 GSKLTYVDLSSNLLSGKLPDCWWTFDSLVILNLENNSFSGRIPDSMGFLQNIQTLSLHNNRLTGELSSSFRNCSQLRLLD 563 (833)
Q Consensus 484 ~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 563 (833)
+..-...|++.|++. .+|..+..+..|+.+.|..|.+. .+|..+.++..|++|+|+.|+++ .+|..++.|+ |+.|-
T Consensus 74 ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli 149 (722)
T KOG0532|consen 74 LTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLI 149 (722)
T ss_pred ccchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEE
Confidence 344556677777776 56666677777777777777776 66667777777777777777777 5566666655 67777
Q ss_pred cCCCccCCCCCcchhhcCCccceEEecCCcccccccccccCCCCCCEEeccCCcCcccCCccccccccccccCCCCcccc
Q 048006 564 LGKNALYGEIPTWMGESLSNLIVLSLKSNKFHGKIPFQLCQLAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIK 643 (833)
Q Consensus 564 L~~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~ 643 (833)
+++|+++ .+|..++ ...+|..||.+.|.+. .+|..++++.+|+.|.+..|++. .+|..+..++
T Consensus 150 ~sNNkl~-~lp~~ig-~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~Lp------------- 212 (722)
T KOG0532|consen 150 VSNNKLT-SLPEEIG-LLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSLP------------- 212 (722)
T ss_pred EecCccc-cCCcccc-cchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCCc-------------
Confidence 7777776 7777766 5677777777777776 56667777777777777777776 4444443322
Q ss_pred cceEEeeccCcchhccccCcccEEEccCCcCCCCCchhhhcccCCcEEECCCccccccCCccc---CCCCCCCEEeCCCC
Q 048006 644 DKLMLTWKGSEREYRSTLGLVKSLELSNNNLNGAVPEEIMDLVGLVALNLSKNHLTGQISPKI---GQLKSLDFLDLSRN 720 (833)
Q Consensus 644 ~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l---~~l~~L~~L~Ls~N 720 (833)
|..||+|+|+++ .+|-.|.+|+.|++|-|.+|.+. ..|..+ +...-.++|+..-+
T Consensus 213 --------------------Li~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 213 --------------------LIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ-SPPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred --------------------eeeeecccCcee-ecchhhhhhhhheeeeeccCCCC-CChHHHHhccceeeeeeecchhc
Confidence 367777777777 67777777777777777777776 444443 23344566666666
Q ss_pred c
Q 048006 721 Q 721 (833)
Q Consensus 721 ~ 721 (833)
+
T Consensus 271 q 271 (722)
T KOG0532|consen 271 Q 271 (722)
T ss_pred c
Confidence 4
No 26
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.26 E-value=2.1e-13 Score=142.10 Aligned_cols=196 Identities=26% Similarity=0.439 Sum_probs=162.9
Q ss_pred CCCCCcEEEccCCcccccCCCCccCcCCccEEEcccCcCccccCccccCCCCCcEeccCCCccCCCCCcchhhcCCccce
Q 048006 507 TFDSLVILNLENNSFSGRIPDSMGFLQNIQTLSLHNNRLTGELSSSFRNCSQLRLLDLGKNALYGEIPTWMGESLSNLIV 586 (833)
Q Consensus 507 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~ 586 (833)
.+.--...|++.|++. ++|..+..+..|+.+.|..|.+. .+|..+.++..|++|||+.|+++ .+|..++ .+ -|+.
T Consensus 73 ~ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC-~l-pLkv 147 (722)
T KOG0532|consen 73 DLTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLC-DL-PLKV 147 (722)
T ss_pred cccchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhh-cC-ccee
Confidence 3445567899999998 78888888999999999999998 78888999999999999999998 8898887 34 5999
Q ss_pred EEecCCcccccccccccCCCCCCEEeccCCcCcccCCccccccccccccCCCCcccccceEEeeccCcchhccccCcccE
Q 048006 587 LSLKSNKFHGKIPFQLCQLAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKDKLMLTWKGSEREYRSTLGLVKS 666 (833)
Q Consensus 587 L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 666 (833)
|.+++|+++ .+|..++.+..|..||.+.|.+. .+|..++++.+| +.
T Consensus 148 li~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~sl--------------------------------r~ 193 (722)
T KOG0532|consen 148 LIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSL--------------------------------RD 193 (722)
T ss_pred EEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHH--------------------------------HH
Confidence 999999998 78888888899999999999997 667777777666 77
Q ss_pred EEccCCcCCCCCchhhhcccCCcEEECCCccccccCCcccCCCCCCCEEeCCCCcCcccCCcccc---CCCCCCEEECcC
Q 048006 667 LELSNNNLNGAVPEEIMDLVGLVALNLSKNHLTGQISPKIGQLKSLDFLDLSRNQLVGGIPSSLS---QLSGLSVMDLSY 743 (833)
Q Consensus 667 L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~---~l~~L~~L~ls~ 743 (833)
|.+..|++. .+|+++..| .|..||+|.|+++ .+|-.|..|+.|++|-|.+|.+. ..|..+. ...-.++|+..-
T Consensus 194 l~vrRn~l~-~lp~El~~L-pLi~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC~kGkVHIFKyL~~qA 269 (722)
T KOG0532|consen 194 LNVRRNHLE-DLPEELCSL-PLIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ-SPPAQICEKGKVHIFKYLSTQA 269 (722)
T ss_pred HHHhhhhhh-hCCHHHhCC-ceeeeecccCcee-ecchhhhhhhhheeeeeccCCCC-CChHHHHhccceeeeeeecchh
Confidence 888888888 677778754 4888999999998 88999999999999999999998 5665543 233456777776
Q ss_pred Cc
Q 048006 744 NN 745 (833)
Q Consensus 744 N~ 745 (833)
++
T Consensus 270 ~q 271 (722)
T KOG0532|consen 270 CQ 271 (722)
T ss_pred cc
Confidence 64
No 27
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.22 E-value=1.5e-11 Score=134.88 Aligned_cols=197 Identities=37% Similarity=0.573 Sum_probs=100.0
Q ss_pred EEEcCCCcCcCCCCCcccCCCCCcEEEccCCcccccCCCCccCcC-CccEEEcccCcCccccCccccCCCCCcEeccCCC
Q 048006 489 YVDLSSNLLSGKLPDCWWTFDSLVILNLENNSFSGRIPDSMGFLQ-NIQTLSLHNNRLTGELSSSFRNCSQLRLLDLGKN 567 (833)
Q Consensus 489 ~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 567 (833)
.++++.|.+.... .....++.++.|++.+|.++ .++....... +|+.|++++|++. .+|..+..+++|+.|++++|
T Consensus 97 ~l~~~~~~~~~~~-~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N 173 (394)
T COG4886 97 SLDLNLNRLRSNI-SELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFN 173 (394)
T ss_pred eeeccccccccCc-hhhhcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCc
Confidence 4566666553222 22333455666666666666 3333444443 6666666666666 33344556666666666666
Q ss_pred ccCCCCCcchhhcCCccceEEecCCcccccccccccCCCCCCEEeccCCcCcccCCccccccccccccCCCCcccccceE
Q 048006 568 ALYGEIPTWMGESLSNLIVLSLKSNKFHGKIPFQLCQLAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKDKLM 647 (833)
Q Consensus 568 ~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~ 647 (833)
++. .+|.... ..+.|+.|++++|++. .+|........|+++.+++|++. ..+..+.++..+
T Consensus 174 ~l~-~l~~~~~-~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l--------------- 234 (394)
T COG4886 174 DLS-DLPKLLS-NLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNL--------------- 234 (394)
T ss_pred hhh-hhhhhhh-hhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccc---------------
Confidence 665 5555443 3556666666666665 34444334444555666555422 222223333222
Q ss_pred EeeccCcchhccccCcccEEEccCCcCCCCCchhhhcccCCcEEECCCccccccCCcccCCCCCCCEEeCCCCcCcccCC
Q 048006 648 LTWKGSEREYRSTLGLVKSLELSNNNLNGAVPEEIMDLVGLVALNLSKNHLTGQISPKIGQLKSLDFLDLSRNQLVGGIP 727 (833)
Q Consensus 648 ~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p 727 (833)
..+.+++|++. ..+..++.+++++.|++++|.++.. +. ++.+.+++.|++++|.++..+|
T Consensus 235 -----------------~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i~~i-~~-~~~~~~l~~L~~s~n~~~~~~~ 294 (394)
T COG4886 235 -----------------SGLELSNNKLE-DLPESIGNLSNLETLDLSNNQISSI-SS-LGSLTNLRELDLSGNSLSNALP 294 (394)
T ss_pred -----------------cccccCCceee-eccchhccccccceecccccccccc-cc-ccccCccCEEeccCccccccch
Confidence 34445555544 2244445555555555555555522 22 4555555555555555554443
No 28
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.20 E-value=1.9e-11 Score=134.08 Aligned_cols=198 Identities=34% Similarity=0.481 Sum_probs=106.9
Q ss_pred EEEccCCcccccCCCCccCcCCccEEEcccCcCccccCccccCCC-CCcEeccCCCccCCCCCcchhhcCCccceEEecC
Q 048006 513 ILNLENNSFSGRIPDSMGFLQNIQTLSLHNNRLTGELSSSFRNCS-QLRLLDLGKNALYGEIPTWMGESLSNLIVLSLKS 591 (833)
Q Consensus 513 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~ 591 (833)
.++++.|.+...+ ..+..++.++.|++.+|.++ .++......+ +|+.|++++|++. .+|..+. .+++|+.|++++
T Consensus 97 ~l~~~~~~~~~~~-~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~-~l~~L~~L~l~~ 172 (394)
T COG4886 97 SLDLNLNRLRSNI-SELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLR-NLPNLKNLDLSF 172 (394)
T ss_pred eeeccccccccCc-hhhhcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhh-ccccccccccCC
Confidence 4555555553221 22333455666666666666 3333344442 6666666666665 5544444 466666666666
Q ss_pred CcccccccccccCCCCCCEEeccCCcCcccCCccccccccccccCCCCcccccceEEeeccCcchhccccCcccEEEccC
Q 048006 592 NKFHGKIPFQLCQLAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKDKLMLTWKGSEREYRSTLGLVKSLELSN 671 (833)
Q Consensus 592 N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~ 671 (833)
|++. .+|.....++.|+.|++++|++. .+|....... .|++|++++
T Consensus 173 N~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~--------------------------------~L~~l~~~~ 218 (394)
T COG4886 173 NDLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLS--------------------------------ALEELDLSN 218 (394)
T ss_pred chhh-hhhhhhhhhhhhhheeccCCccc-cCchhhhhhh--------------------------------hhhhhhhcC
Confidence 6666 34444445566666666666665 3333221111 135566666
Q ss_pred CcCCCCCchhhhcccCCcEEECCCccccccCCcccCCCCCCCEEeCCCCcCcccCCccccCCCCCCEEECcCCcCccCCC
Q 048006 672 NNLNGAVPEEIMDLVGLVALNLSKNHLTGQISPKIGQLKSLDFLDLSRNQLVGGIPSSLSQLSGLSVMDLSYNNLSGKIP 751 (833)
Q Consensus 672 n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip 751 (833)
|.+. .++..+..+..+..|.+++|++. ..+..++.+++++.|++++|+++.. +. +..+.+++.|++++|.++..+|
T Consensus 219 N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i~~i-~~-~~~~~~l~~L~~s~n~~~~~~~ 294 (394)
T COG4886 219 NSII-ELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQISSI-SS-LGSLTNLRELDLSGNSLSNALP 294 (394)
T ss_pred Ccce-ecchhhhhcccccccccCCceee-eccchhccccccceecccccccccc-cc-ccccCccCEEeccCccccccch
Confidence 6433 45555566666666666666665 2245556666666666666666633 22 5566666666666666655544
Q ss_pred C
Q 048006 752 T 752 (833)
Q Consensus 752 ~ 752 (833)
.
T Consensus 295 ~ 295 (394)
T COG4886 295 L 295 (394)
T ss_pred h
Confidence 3
No 29
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.15 E-value=2.4e-12 Score=126.95 Aligned_cols=258 Identities=23% Similarity=0.267 Sum_probs=142.3
Q ss_pred ccCCCCCcEEECcCCccccc----ccccccCCCCCcEEEccCCC---CCchhhHHHhhcCCccccCCccEEEcccccccc
Q 048006 259 FQHMVYLEHLRLSFNELEGG----IPKFFGNMCSLITLNLSNNK---LSGQLSEIIQNLSSGCLENSLKSLYLENSLTGV 331 (833)
Q Consensus 259 ~~~l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~Ls~n~---l~~~~~~~l~~l~~~~~~~~L~~L~L~~~~~~~ 331 (833)
+..+..+++++|++|.+... +...+.+.++|+..++++-- +...+|+.+..+.
T Consensus 26 ~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~-------------------- 85 (382)
T KOG1909|consen 26 LEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLS-------------------- 85 (382)
T ss_pred hcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHH--------------------
Confidence 34556677777777776532 23345566677777776542 2223444443332
Q ss_pred cChhhhcCCCCCCEEECcCCccccccCCCccCCccccEEEccCccCCCCCChhhcccccccEEeecCCccccccchhHHh
Q 048006 332 ISESFFSNISNLKELHLANNPLVLKLSHDWVPPFQLIIISLSSCKIGPHFPKWLQTQNQIELLDISNTGISDTIPDWFWN 411 (833)
Q Consensus 332 i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~ 411 (833)
..+..+++|++++||+|.+....+.. +...+.++..|++|.|.+|.+.......+..
T Consensus 86 ---~aL~~~~~L~~ldLSDNA~G~~g~~~--------------------l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~ 142 (382)
T KOG1909|consen 86 ---KALLGCPKLQKLDLSDNAFGPKGIRG--------------------LEELLSSCTDLEELYLNNCGLGPEAGGRLGR 142 (382)
T ss_pred ---HHHhcCCceeEeeccccccCccchHH--------------------HHHHHHhccCHHHHhhhcCCCChhHHHHHHH
Confidence 14566677777877777665433222 2233456677777777777765333333222
Q ss_pred hcccccEEEcccccccccCCccccccCCCCCceecccCcccccCCCCCCCCceeecCCCcccccccccccccCCcccEEE
Q 048006 412 LSNKFSFLDLASNQIKGKLPNLSSRFGTSNPGIDISSNHFEGLIPPLPSNSSFLNLSKNRFSGSISFLCSISGSKLTYVD 491 (833)
Q Consensus 412 ~~~~L~~L~L~~n~l~~~~p~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~ 491 (833)
. |..|. .++.. .. -+.|+.+.
T Consensus 143 a---l~~l~--~~kk~--------~~----------------------------------------------~~~Lrv~i 163 (382)
T KOG1909|consen 143 A---LFELA--VNKKA--------AS----------------------------------------------KPKLRVFI 163 (382)
T ss_pred H---HHHHH--HHhcc--------CC----------------------------------------------CcceEEEE
Confidence 1 11111 11111 00 14455555
Q ss_pred cCCCcCcCC----CCCcccCCCCCcEEEccCCccccc----CCCCccCcCCccEEEcccCcCcc----ccCccccCCCCC
Q 048006 492 LSSNLLSGK----LPDCWWTFDSLVILNLENNSFSGR----IPDSMGFLQNIQTLSLHNNRLTG----ELSSSFRNCSQL 559 (833)
Q Consensus 492 ls~n~l~~~----~~~~~~~l~~L~~L~Ls~N~l~~~----~~~~~~~l~~L~~L~L~~n~l~~----~~~~~~~~l~~L 559 (833)
...|++... +...|...+.|+.+.++.|.|... +...|..+++|++|||.+|-++. .+...+..+++|
T Consensus 164 ~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L 243 (382)
T KOG1909|consen 164 CGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHL 243 (382)
T ss_pred eeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchh
Confidence 555554322 222345556666666666655421 22345566777777777776662 223445666777
Q ss_pred cEeccCCCccCCCCCc----chhhcCCccceEEecCCccccc----ccccccCCCCCCEEeccCCcC
Q 048006 560 RLLDLGKNALYGEIPT----WMGESLSNLIVLSLKSNKFHGK----IPFQLCQLAFLQVLDLSLNNI 618 (833)
Q Consensus 560 ~~L~L~~n~l~~~~p~----~~~~~l~~L~~L~L~~N~l~~~----~~~~l~~l~~L~~L~Ls~N~l 618 (833)
+.|++++|.+...-.. .+....++|++|.+.+|.++.. +...+...+.|..|+|++|++
T Consensus 244 ~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 244 RELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred eeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 7777777777633222 2223467788888888877622 233455578888888888888
No 30
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.12 E-value=1.6e-11 Score=117.98 Aligned_cols=133 Identities=27% Similarity=0.254 Sum_probs=96.9
Q ss_pred CCccceEEecCCcccccccccccCCCCCCEEeccCCcCcccCCccccccccccccCCCCcccccceEEeeccCcchhccc
Q 048006 581 LSNLIVLSLKSNKFHGKIPFQLCQLAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKDKLMLTWKGSEREYRST 660 (833)
Q Consensus 581 l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 660 (833)
...|+++||++|.|+ .+.++..-.+.++.|++|+|.|...- .+..
T Consensus 283 Wq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v~--nLa~-------------------------------- 327 (490)
T KOG1259|consen 283 WQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTVQ--NLAE-------------------------------- 327 (490)
T ss_pred Hhhhhhccccccchh-hhhhhhhhccceeEEeccccceeeeh--hhhh--------------------------------
Confidence 456788888888877 56667777788888888888876211 1222
Q ss_pred cCcccEEEccCCcCCCCCchhhhcccCCcEEECCCccccccCCcccCCCCCCCEEeCCCCcCcccC-CccccCCCCCCEE
Q 048006 661 LGLVKSLELSNNNLNGAVPEEIMDLVGLVALNLSKNHLTGQISPKIGQLKSLDFLDLSRNQLVGGI-PSSLSQLSGLSVM 739 (833)
Q Consensus 661 ~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~-p~~l~~l~~L~~L 739 (833)
+++|+.||||+|.++ .+...-..+-+.+.|.|+.|.|... ..++.+-+|..||+++|+|.... -..++++|.|+.+
T Consensus 328 L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l 404 (490)
T KOG1259|consen 328 LPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLAQNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETL 404 (490)
T ss_pred cccceEeecccchhH-hhhhhHhhhcCEeeeehhhhhHhhh--hhhHhhhhheeccccccchhhHHHhcccccccHHHHH
Confidence 344588888888887 4555556677888888888888644 56777888899999999887432 2567888999999
Q ss_pred ECcCCcCccCCC
Q 048006 740 DLSYNNLSGKIP 751 (833)
Q Consensus 740 ~ls~N~l~g~ip 751 (833)
.+.+|++++.+-
T Consensus 405 ~L~~NPl~~~vd 416 (490)
T KOG1259|consen 405 RLTGNPLAGSVD 416 (490)
T ss_pred hhcCCCccccch
Confidence 999999987554
No 31
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.11 E-value=1.2e-11 Score=125.32 Aligned_cols=85 Identities=27% Similarity=0.350 Sum_probs=46.0
Q ss_pred ccEEEccCCcCCCCCc-hhhhcccCCcEEECCCccccccC-Ccc-----cCCCCCCCEEeCCCCcCccc-CCccccCCCC
Q 048006 664 VKSLELSNNNLNGAVP-EEIMDLVGLVALNLSKNHLTGQI-SPK-----IGQLKSLDFLDLSRNQLVGG-IPSSLSQLSG 735 (833)
Q Consensus 664 L~~L~Ls~n~l~~~~p-~~l~~l~~L~~L~Ls~N~l~~~~-p~~-----l~~l~~L~~L~Ls~N~l~~~-~p~~l~~l~~ 735 (833)
|++|||++|++..... ...+.++.|+.|+++.+.+...- |+. ...+++|++|+++.|++..- --..+..+++
T Consensus 248 L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~n 327 (505)
T KOG3207|consen 248 LQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLEN 327 (505)
T ss_pred HhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccch
Confidence 3566666666552211 23455666666666666665321 222 24456777777777777421 0122344456
Q ss_pred CCEEECcCCcCcc
Q 048006 736 LSVMDLSYNNLSG 748 (833)
Q Consensus 736 L~~L~ls~N~l~g 748 (833)
|+.|.+..|.++.
T Consensus 328 lk~l~~~~n~ln~ 340 (505)
T KOG3207|consen 328 LKHLRITLNYLNK 340 (505)
T ss_pred hhhhhcccccccc
Confidence 6666666676654
No 32
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.09 E-value=3.4e-11 Score=112.15 Aligned_cols=111 Identities=31% Similarity=0.374 Sum_probs=30.9
Q ss_pred ccCCCCCCEEeCCCCCCCCCCcccccc-CCCCCCEEEccCCCCCCCCCcccCCccccceecccCccCCCCCCcccc-cCC
Q 048006 83 LLKLHDLRHLNLSFNDFSGSPIPEFIG-SLSKLRYLDLFGTVFAGPIPPQLGNLSRLQHLDLGSNYLFSTGNLDWL-SHL 160 (833)
Q Consensus 83 l~~l~~L~~L~Ls~n~~~~~~~p~~~~-~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~~~~~~~~~~l-~~l 160 (833)
+.+...+++|+|++|.|+.+ +.++ .+.+|+.||||+|.|.. ++ .+..+++|++|++++|.+..+ ...+ ..+
T Consensus 15 ~~n~~~~~~L~L~~n~I~~I---e~L~~~l~~L~~L~Ls~N~I~~-l~-~l~~L~~L~~L~L~~N~I~~i--~~~l~~~l 87 (175)
T PF14580_consen 15 YNNPVKLRELNLRGNQISTI---ENLGATLDKLEVLDLSNNQITK-LE-GLPGLPRLKTLDLSNNRISSI--SEGLDKNL 87 (175)
T ss_dssp ------------------------S--TT-TT--EEE-TTS--S---T-T----TT--EEE--SS---S---CHHHHHH-
T ss_pred cccccccccccccccccccc---cchhhhhcCCCEEECCCCCCcc-cc-CccChhhhhhcccCCCCCCcc--ccchHHhC
Confidence 33444566677777766632 3344 45666777777776663 32 355666666666666666432 1122 346
Q ss_pred CCCcEEecCCCCCCCCchhHHhhcCCCCCCEEEccCCCCCC
Q 048006 161 SYLRYLNLDESNLANSSDWFQVIGKLHSLKTLSLHSCYLPP 201 (833)
Q Consensus 161 ~~L~~L~Ls~n~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~ 201 (833)
++|++|++++|++.+...+ ..++.+++|++|+|.+|.+..
T Consensus 88 p~L~~L~L~~N~I~~l~~l-~~L~~l~~L~~L~L~~NPv~~ 127 (175)
T PF14580_consen 88 PNLQELYLSNNKISDLNEL-EPLSSLPKLRVLSLEGNPVCE 127 (175)
T ss_dssp TT--EEE-TTS---SCCCC-GGGGG-TT--EEE-TT-GGGG
T ss_pred CcCCEEECcCCcCCChHHh-HHHHcCCCcceeeccCCcccc
Confidence 6666666666666555433 345556666666666665543
No 33
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.03 E-value=3.5e-11 Score=122.14 Aligned_cols=164 Identities=25% Similarity=0.217 Sum_probs=79.6
Q ss_pred CccccceecccCccCCCCCCcccccCCCCCcEEecCCCCCCCCchhHHhhcCCCCCCEEEccCCCCCCCCCccccccccC
Q 048006 134 NLSRLQHLDLGSNYLFSTGNLDWLSHLSYLRYLNLDESNLANSSDWFQVIGKLHSLKTLSLHSCYLPPVIPLSLNHLNSS 213 (833)
Q Consensus 134 ~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~ 213 (833)
++.+|+...|.++.....+.-.....|++++.||||+|-+.....+......+++|+.|+|+.|.+...... ..-..+
T Consensus 119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s--~~~~~l 196 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISS--NTTLLL 196 (505)
T ss_pred hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccc--cchhhh
Confidence 445555555555444321111234455555555555555555444444555666666666666665443332 111123
Q ss_pred CCCCEEEccCCcCCCCCCC-cccccccCCcEEEccCccccccccccccCCCCCcEEECcCCcccccc-cccccCCCCCcE
Q 048006 214 TSLETLVLSDNNLTSSIYP-WLPNISSIFISIDLGFNQLQGSIPESFQHMVYLEHLRLSFNELEGGI-PKFFGNMCSLIT 291 (833)
Q Consensus 214 ~~L~~L~Ls~n~l~~~~~~-~l~~l~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~-p~~l~~l~~L~~ 291 (833)
+.|+.|.|+.|.++...-. .+..+++ ++.|+|..|............+..|++|||++|.+-... -...+.++.|+.
T Consensus 197 ~~lK~L~l~~CGls~k~V~~~~~~fPs-l~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~ 275 (505)
T KOG3207|consen 197 SHLKQLVLNSCGLSWKDVQWILLTFPS-LEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQ 275 (505)
T ss_pred hhhheEEeccCCCCHHHHHHHHHhCCc-HHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhh
Confidence 5666666666665521111 1122333 555666665422222223344555666666666554211 123455666666
Q ss_pred EEccCCCCC
Q 048006 292 LNLSNNKLS 300 (833)
Q Consensus 292 L~Ls~n~l~ 300 (833)
|+++.+.+.
T Consensus 276 Lnls~tgi~ 284 (505)
T KOG3207|consen 276 LNLSSTGIA 284 (505)
T ss_pred hhccccCcc
Confidence 666666554
No 34
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.01 E-value=4.5e-11 Score=118.16 Aligned_cols=234 Identities=25% Similarity=0.263 Sum_probs=146.9
Q ss_pred CcEEEEECCCCCCCCCCcce----ecCccccCCCCCCEEeCCCCCCCCC---Cccc-------cccCCCCCCEEEccCCC
Q 048006 58 NHVILLDLQPIDFDSFPLRG----TISPALLKLHDLRHLNLSFNDFSGS---PIPE-------FIGSLSKLRYLDLFGTV 123 (833)
Q Consensus 58 ~~v~~l~L~~~~~~~~~l~~----~~~~~l~~l~~L~~L~Ls~n~~~~~---~~p~-------~~~~l~~L~~L~Ls~n~ 123 (833)
..++.++|++ +.+.. .+.+.+.+.+.|+..++|+- ++|. .+|+ .+-.+++|++||||+|.
T Consensus 30 ~s~~~l~lsg-----nt~G~EAa~~i~~~L~~~~~L~~v~~sd~-ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA 103 (382)
T KOG1909|consen 30 DSLTKLDLSG-----NTFGTEAARAIAKVLASKKELREVNLSDM-FTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNA 103 (382)
T ss_pred CceEEEeccC-----CchhHHHHHHHHHHHhhcccceeeehHhh-hcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccc
Confidence 4688899998 45432 34566788888999888854 3332 2343 34556789999999998
Q ss_pred CCCCCCcc----cCCccccceecccCccCCCCCCc------------ccccCCCCCcEEecCCCCCCCC--chhHHhhcC
Q 048006 124 FAGPIPPQ----LGNLSRLQHLDLGSNYLFSTGNL------------DWLSHLSYLRYLNLDESNLANS--SDWFQVIGK 185 (833)
Q Consensus 124 l~~~~p~~----~~~l~~L~~L~Ls~n~~~~~~~~------------~~l~~l~~L~~L~Ls~n~~~~~--~~~~~~l~~ 185 (833)
+.-.-+.. +.+++.|++|.|.+|.+.....- ...+.-+.|++++.++|++.+. ..+...+..
T Consensus 104 ~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~ 183 (382)
T KOG1909|consen 104 FGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQS 183 (382)
T ss_pred cCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHh
Confidence 86544433 45678899999999876321110 1244567889999998888654 345667778
Q ss_pred CCCCCEEEccCCCCCCCCC--ccccccccCCCCCEEEccCCcCCCC----CCCcccccccCCcEEEccCccccccccccc
Q 048006 186 LHSLKTLSLHSCYLPPVIP--LSLNHLNSSTSLETLVLSDNNLTSS----IYPWLPNISSIFISIDLGFNQLQGSIPESF 259 (833)
Q Consensus 186 l~~L~~L~Ls~n~l~~~~~--~~~~~~~~~~~L~~L~Ls~n~l~~~----~~~~l~~l~~~L~~L~Ls~n~l~~~~p~~~ 259 (833)
.+.|+.+.+..|.+...-- .. ..+..+++|+.|||.+|.++.. +...++.++. |+.|++++|.+...-..+|
T Consensus 184 ~~~leevr~~qN~I~~eG~~al~-eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~-L~El~l~dcll~~~Ga~a~ 261 (382)
T KOG1909|consen 184 HPTLEEVRLSQNGIRPEGVTALA-EALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPH-LRELNLGDCLLENEGAIAF 261 (382)
T ss_pred ccccceEEEecccccCchhHHHH-HHHHhCCcceeeecccchhhhHHHHHHHHHhcccch-heeecccccccccccHHHH
Confidence 8888888888887643211 11 1122348888888888887632 2233444454 6777777776654333222
Q ss_pred -----cCCCCCcEEECcCCcccc----cccccccCCCCCcEEEccCCCC
Q 048006 260 -----QHMVYLEHLRLSFNELEG----GIPKFFGNMCSLITLNLSNNKL 299 (833)
Q Consensus 260 -----~~l~~L~~L~L~~n~l~~----~~p~~l~~l~~L~~L~Ls~n~l 299 (833)
...+.|++|.+.+|.++. .+.......+.|+.|+|++|.+
T Consensus 262 ~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 262 VDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred HHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 135666777777776653 1122234466666666666666
No 35
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.00 E-value=2.2e-10 Score=106.70 Aligned_cols=126 Identities=33% Similarity=0.357 Sum_probs=59.7
Q ss_pred cEEEEECCCCCCCCCCcceecCcccc-CCCCCCEEeCCCCCCCCCCccccccCCCCCCEEEccCCCCCCCCCccc-CCcc
Q 048006 59 HVILLDLQPIDFDSFPLRGTISPALL-KLHDLRHLNLSFNDFSGSPIPEFIGSLSKLRYLDLFGTVFAGPIPPQL-GNLS 136 (833)
Q Consensus 59 ~v~~l~L~~~~~~~~~l~~~~~~~l~-~l~~L~~L~Ls~n~~~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~-~~l~ 136 (833)
+.+.|+|.+ +.++. + ..++ .+.+|+.|+|++|.|+.. +.+..+++|++|++++|.|+. +++.+ ..++
T Consensus 20 ~~~~L~L~~-----n~I~~-I-e~L~~~l~~L~~L~Ls~N~I~~l---~~l~~L~~L~~L~L~~N~I~~-i~~~l~~~lp 88 (175)
T PF14580_consen 20 KLRELNLRG-----NQIST-I-ENLGATLDKLEVLDLSNNQITKL---EGLPGLPRLKTLDLSNNRISS-ISEGLDKNLP 88 (175)
T ss_dssp -----------------------S--TT-TT--EEE-TTS--S-----TT----TT--EEE--SS---S--CHHHHHH-T
T ss_pred ccccccccc-----ccccc-c-cchhhhhcCCCEEECCCCCCccc---cCccChhhhhhcccCCCCCCc-cccchHHhCC
Confidence 567899988 44432 2 2354 578999999999999954 358889999999999999984 55445 4689
Q ss_pred ccceecccCccCCCCCCcccccCCCCCcEEecCCCCCCCCch-hHHhhcCCCCCCEEEcc
Q 048006 137 RLQHLDLGSNYLFSTGNLDWLSHLSYLRYLNLDESNLANSSD-WFQVIGKLHSLKTLSLH 195 (833)
Q Consensus 137 ~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~-~~~~l~~l~~L~~L~Ls 195 (833)
+|++|++++|.|........++.+++|++|++.+|.++.... -...+..+|+|+.||-.
T Consensus 89 ~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 89 NLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp T--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTE
T ss_pred cCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCE
Confidence 999999999999888888899999999999999999976533 23457788999988754
No 36
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.97 E-value=1.6e-10 Score=111.27 Aligned_cols=134 Identities=31% Similarity=0.369 Sum_probs=103.1
Q ss_pred ccCCCCCcEeccCCCccCCCCCcchhhcCCccceEEecCCcccccccccccCCCCCCEEeccCCcCcccCCccccccccc
Q 048006 553 FRNCSQLRLLDLGKNALYGEIPTWMGESLSNLIVLSLKSNKFHGKIPFQLCQLAFLQVLDLSLNNISGKIPKCFNNFTAM 632 (833)
Q Consensus 553 ~~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L 632 (833)
......|+.+|+++|.|+ .+.+.+- -.|.++.|++++|.+... ..+..+++|+.||||+|.++. +..+
T Consensus 280 ~dTWq~LtelDLS~N~I~-~iDESvK-L~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls~-~~Gw------- 347 (490)
T KOG1259|consen 280 ADTWQELTELDLSGNLIT-QIDESVK-LAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLAE-CVGW------- 347 (490)
T ss_pred cchHhhhhhccccccchh-hhhhhhh-hccceeEEeccccceeee--hhhhhcccceEeecccchhHh-hhhh-------
Confidence 334567889999999988 7777765 578999999999998733 247889999999999998862 2111
Q ss_pred cccCCCCcccccceEEeeccCcchhccccCcccEEEccCCcCCCCCchhhhcccCCcEEECCCccccccC-CcccCCCCC
Q 048006 633 TQERSSDPTIKDKLMLTWKGSEREYRSTLGLVKSLELSNNNLNGAVPEEIMDLVGLVALNLSKNHLTGQI-SPKIGQLKS 711 (833)
Q Consensus 633 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~-p~~l~~l~~ 711 (833)
...+.+.+.|.|++|.+. .-..++.+-+|..||+++|+|.... -..++++|.
T Consensus 348 -------------------------h~KLGNIKtL~La~N~iE--~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPC 400 (490)
T KOG1259|consen 348 -------------------------HLKLGNIKTLKLAQNKIE--TLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPC 400 (490)
T ss_pred -------------------------HhhhcCEeeeehhhhhHh--hhhhhHhhhhheeccccccchhhHHHhcccccccH
Confidence 123445589999999985 3345788899999999999997432 246899999
Q ss_pred CCEEeCCCCcCccc
Q 048006 712 LDFLDLSRNQLVGG 725 (833)
Q Consensus 712 L~~L~Ls~N~l~~~ 725 (833)
|+.+.|.+|.+.+.
T Consensus 401 LE~l~L~~NPl~~~ 414 (490)
T KOG1259|consen 401 LETLRLTGNPLAGS 414 (490)
T ss_pred HHHHhhcCCCcccc
Confidence 99999999999854
No 37
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.87 E-value=2.6e-10 Score=125.02 Aligned_cols=246 Identities=25% Similarity=0.241 Sum_probs=134.6
Q ss_pred CCCceeecCCCcccccccccccccCCcccEEEcCCCcCcCCCCCcccCCCCCcEEEccCCcccccCCCCccCcCCccEEE
Q 048006 460 SNSSFLNLSKNRFSGSISFLCSISGSKLTYVDLSSNLLSGKLPDCWWTFDSLVILNLENNSFSGRIPDSMGFLQNIQTLS 539 (833)
Q Consensus 460 ~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 539 (833)
..++.+++..|.+......... +.+|+.+++.+|+|.... ..+..+++|++|++++|.|+... .+..++.|+.|+
T Consensus 72 ~~l~~l~l~~n~i~~~~~~l~~--~~~l~~l~l~~n~i~~i~-~~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L~ 146 (414)
T KOG0531|consen 72 TSLKELNLRQNLIAKILNHLSK--LKSLEALDLYDNKIEKIE-NLLSSLVNLQVLDLSFNKITKLE--GLSTLTLLKELN 146 (414)
T ss_pred HhHHhhccchhhhhhhhccccc--ccceeeeeccccchhhcc-cchhhhhcchheecccccccccc--chhhccchhhhe
Confidence 3444455555555432221111 355566666666655332 12445555666666666655432 234445556666
Q ss_pred cccCcCccccCccccCCCCCcEeccCCCccCCCCCcchhhcCCccceEEecCCcccccccccccCCCCCCEEeccCCcCc
Q 048006 540 LHNNRLTGELSSSFRNCSQLRLLDLGKNALYGEIPTWMGESLSNLIVLSLKSNKFHGKIPFQLCQLAFLQVLDLSLNNIS 619 (833)
Q Consensus 540 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~ 619 (833)
+++|.++.. ..+..++.|+.+++++|.+. .++......+.+++.+++.+|.+... ..+..+..+..+++..|.++
T Consensus 147 l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~-~ie~~~~~~~~~l~~l~l~~n~i~~i--~~~~~~~~l~~~~l~~n~i~ 221 (414)
T KOG0531|consen 147 LSGNLISDI--SGLESLKSLKLLDLSYNRIV-DIENDELSELISLEELDLGGNSIREI--EGLDLLKKLVLLSLLDNKIS 221 (414)
T ss_pred eccCcchhc--cCCccchhhhcccCCcchhh-hhhhhhhhhccchHHHhccCCchhcc--cchHHHHHHHHhhcccccce
Confidence 666655532 23444555556666666555 33321011355555555555555421 12223333344455555544
Q ss_pred ccCCccccccccccccCCCCcccccceEEeeccCcchhccccC--cccEEEccCCcCCCCCchhhhcccCCcEEECCCcc
Q 048006 620 GKIPKCFNNFTAMTQERSSDPTIKDKLMLTWKGSEREYRSTLG--LVKSLELSNNNLNGAVPEEIMDLVGLVALNLSKNH 697 (833)
Q Consensus 620 ~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~ 697 (833)
..-+ + ..+. .|+.+++++|++. .++..+..+..+..|++++|+
T Consensus 222 ~~~~-----l-----------------------------~~~~~~~L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~ 266 (414)
T KOG0531|consen 222 KLEG-----L-----------------------------NELVMLHLRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNR 266 (414)
T ss_pred eccC-----c-----------------------------ccchhHHHHHHhcccCccc-cccccccccccccccchhhcc
Confidence 2111 0 0011 2588889999887 444667778888899999998
Q ss_pred ccccCCcccCCCCCCCEEeCCCCcCccc---CCcc-ccCCCCCCEEECcCCcCccCCCC
Q 048006 698 LTGQISPKIGQLKSLDFLDLSRNQLVGG---IPSS-LSQLSGLSVMDLSYNNLSGKIPT 752 (833)
Q Consensus 698 l~~~~p~~l~~l~~L~~L~Ls~N~l~~~---~p~~-l~~l~~L~~L~ls~N~l~g~ip~ 752 (833)
+... ..+...+.+..+.++.|.+... .... ....+.+..+++.+|+.....+.
T Consensus 267 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (414)
T KOG0531|consen 267 ISNL--EGLERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNPIRKISSL 323 (414)
T ss_pred cccc--ccccccchHHHhccCcchhcchhhhhccccccccccccccccccCcccccccc
Confidence 8754 4456667788888888887632 1221 45567888888999988876653
No 38
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.86 E-value=3.8e-10 Score=123.77 Aligned_cols=127 Identities=28% Similarity=0.318 Sum_probs=63.1
Q ss_pred CcccEEEcCCCcCcCCCCCcccCCCCCcEEEccCCcccccCCCCccCcCCccEEEcccCcCccccCccccCCCCCcEecc
Q 048006 485 SKLTYVDLSSNLLSGKLPDCWWTFDSLVILNLENNSFSGRIPDSMGFLQNIQTLSLHNNRLTGELSSSFRNCSQLRLLDL 564 (833)
Q Consensus 485 ~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 564 (833)
..++.+.+..|.+.. +-..+..+.+|+.|++.+|.|.+. ...+..+++|++|++++|.|+.+. .+..++.|+.|++
T Consensus 72 ~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~i-~~~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L~l 147 (414)
T KOG0531|consen 72 TSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEKI-ENLLSSLVNLQVLDLSFNKITKLE--GLSTLTLLKELNL 147 (414)
T ss_pred HhHHhhccchhhhhh-hhcccccccceeeeeccccchhhc-ccchhhhhcchheecccccccccc--chhhccchhhhee
Confidence 445555555555553 122344455555566666655532 222444555666666666555332 2444455555666
Q ss_pred CCCccCCCCCcchhhcCCccceEEecCCccccccc-ccccCCCCCCEEeccCCcCc
Q 048006 565 GKNALYGEIPTWMGESLSNLIVLSLKSNKFHGKIP-FQLCQLAFLQVLDLSLNNIS 619 (833)
Q Consensus 565 ~~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~~-~~l~~l~~L~~L~Ls~N~l~ 619 (833)
++|.|. .++..- .+..|+.+++++|.+...-+ . ...+.+++.+++.+|.+.
T Consensus 148 ~~N~i~-~~~~~~--~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~ 199 (414)
T KOG0531|consen 148 SGNLIS-DISGLE--SLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIR 199 (414)
T ss_pred ccCcch-hccCCc--cchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchh
Confidence 666554 333221 25555555666655553322 1 344555555555555554
No 39
>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.
Probab=98.86 E-value=2.9e-09 Score=74.11 Aligned_cols=41 Identities=54% Similarity=1.070 Sum_probs=30.7
Q ss_pred CHHHHHHHHHhhhcCc-CCCCCCCCCCCCCC-CCCCCcccceEec
Q 048006 12 IDEEREALLTFKASLV-DESGVLSSWGPEDE-KRDCCKWTGLRCS 54 (833)
Q Consensus 12 ~~~~~~~ll~~k~~~~-~~~~~~~~w~~~~~-~~~~c~w~gv~c~ 54 (833)
+++|++||++||+++. +|.+.+.+|+. . ..+||+|.||+|+
T Consensus 1 ~~~d~~aLl~~k~~l~~~~~~~l~~W~~--~~~~~~C~W~GV~Cd 43 (43)
T PF08263_consen 1 PNQDRQALLAFKKSLNNDPSGVLSSWNP--SSDSDPCSWSGVTCD 43 (43)
T ss_dssp -HHHHHHHHHHHHCTT-SC-CCCTT--T--T--S-CCCSTTEEE-
T ss_pred CcHHHHHHHHHHHhcccccCcccccCCC--cCCCCCeeeccEEeC
Confidence 3689999999999998 57789999984 2 2799999999995
No 40
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.83 E-value=2.1e-09 Score=82.15 Aligned_cols=60 Identities=42% Similarity=0.532 Sum_probs=38.4
Q ss_pred CCcEEECCCccccccCCcccCCCCCCCEEeCCCCcCcccCCccccCCCCCCEEECcCCcC
Q 048006 687 GLVALNLSKNHLTGQISPKIGQLKSLDFLDLSRNQLVGGIPSSLSQLSGLSVMDLSYNNL 746 (833)
Q Consensus 687 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l 746 (833)
+|++|++++|+++...+..|.++++|++|++++|+++...|..|.++++|++|++++|+|
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 456666666666655555666666666666666666666666666666666666666654
No 41
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.78 E-value=3.8e-09 Score=80.74 Aligned_cols=61 Identities=39% Similarity=0.544 Sum_probs=56.7
Q ss_pred CcccEEEccCCcCCCCCchhhhcccCCcEEECCCccccccCCcccCCCCCCCEEeCCCCcC
Q 048006 662 GLVKSLELSNNNLNGAVPEEIMDLVGLVALNLSKNHLTGQISPKIGQLKSLDFLDLSRNQL 722 (833)
Q Consensus 662 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l 722 (833)
|+|++|++++|+++...+..|.++++|++|++++|+++...|..|.++++|++|++++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 4579999999999977778999999999999999999998889999999999999999986
No 42
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.76 E-value=5.7e-09 Score=122.01 Aligned_cols=109 Identities=36% Similarity=0.430 Sum_probs=61.6
Q ss_pred ccCCCCCCEEeCCCCCCCCCCccccccCCCCCCEEEccCCCCCCCCCcccCCccccceecccCccCCCCCCcccccCCCC
Q 048006 83 LLKLHDLRHLNLSFNDFSGSPIPEFIGSLSKLRYLDLFGTVFAGPIPPQLGNLSRLQHLDLGSNYLFSTGNLDWLSHLSY 162 (833)
Q Consensus 83 l~~l~~L~~L~Ls~n~~~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~ 162 (833)
|..++.|++|||++|.--+ .+|+.++.|-+||||+|+++.+. .+|..+++|++|.+||+..+.... ..+.....+.+
T Consensus 567 f~~m~~LrVLDLs~~~~l~-~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~-~~~~i~~~L~~ 643 (889)
T KOG4658|consen 567 FRSLPLLRVLDLSGNSSLS-KLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLE-SIPGILLELQS 643 (889)
T ss_pred HhhCcceEEEECCCCCccC-cCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhheeccccccccc-cccchhhhccc
Confidence 5557777777777653322 47777777777777777777766 567777777777777776655332 11233444666
Q ss_pred CcEEecCCCCCCCCchhHHhhcCCCCCCEEEc
Q 048006 163 LRYLNLDESNLANSSDWFQVIGKLHSLKTLSL 194 (833)
Q Consensus 163 L~~L~Ls~n~~~~~~~~~~~l~~l~~L~~L~L 194 (833)
||+|.+...........-..+.++.+|+.+..
T Consensus 644 Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~ 675 (889)
T KOG4658|consen 644 LRVLRLPRSALSNDKLLLKELENLEHLENLSI 675 (889)
T ss_pred ccEEEeeccccccchhhHHhhhcccchhhhee
Confidence 66666655542222122233344444444443
No 43
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.71 E-value=6.3e-09 Score=121.67 Aligned_cols=107 Identities=33% Similarity=0.364 Sum_probs=83.6
Q ss_pred CCCCEEeCCCCC--CCCCCccccccCCCCCCEEEccCCCCCCCCCcccCCccccceecccCccCCCCCCcccccCCCCCc
Q 048006 87 HDLRHLNLSFND--FSGSPIPEFIGSLSKLRYLDLFGTVFAGPIPPQLGNLSRLQHLDLGSNYLFSTGNLDWLSHLSYLR 164 (833)
Q Consensus 87 ~~L~~L~Ls~n~--~~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~ 164 (833)
+.|++|-+.+|. +... .+++|..++.|++||||+|.--+.+|..++.|-+||+|++++..+. ..|..+++++.|.
T Consensus 545 ~~L~tLll~~n~~~l~~i-s~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~--~LP~~l~~Lk~L~ 621 (889)
T KOG4658|consen 545 PKLRTLLLQRNSDWLLEI-SGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS--HLPSGLGNLKKLI 621 (889)
T ss_pred CccceEEEeecchhhhhc-CHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc--ccchHHHHHHhhh
Confidence 368888888885 4432 4456888999999999998877789999999999999999999886 5677888888999
Q ss_pred EEecCCCCCCCCchhHHhhcCCCCCCEEEccCCC
Q 048006 165 YLNLDESNLANSSDWFQVIGKLHSLKTLSLHSCY 198 (833)
Q Consensus 165 ~L~Ls~n~~~~~~~~~~~l~~l~~L~~L~Ls~n~ 198 (833)
+|++..+..... ++..+..+++|++|.+....
T Consensus 622 ~Lnl~~~~~l~~--~~~i~~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 622 YLNLEVTGRLES--IPGILLELQSLRVLRLPRSA 653 (889)
T ss_pred eecccccccccc--ccchhhhcccccEEEeeccc
Confidence 998887765443 24455668888888886654
No 44
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.53 E-value=2.1e-09 Score=115.73 Aligned_cols=180 Identities=32% Similarity=0.292 Sum_probs=99.1
Q ss_pred CCCccCcCCccEEEcccCcCccccCccccCC-CCCcEeccCCCccC----------CCCCcchhhcCCccceEEecCCcc
Q 048006 526 PDSMGFLQNIQTLSLHNNRLTGELSSSFRNC-SQLRLLDLGKNALY----------GEIPTWMGESLSNLIVLSLKSNKF 594 (833)
Q Consensus 526 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l-~~L~~L~L~~n~l~----------~~~p~~~~~~l~~L~~L~L~~N~l 594 (833)
|-.+..+.+|++|.+.++.+.. ..++..+ ..|+.|-- .|.+. |.+..... ...|.+.+.+.|.+
T Consensus 102 pi~ifpF~sLr~LElrg~~L~~--~~GL~~lr~qLe~LIC-~~Sl~Al~~v~ascggd~~ns~~--Wn~L~~a~fsyN~L 176 (1096)
T KOG1859|consen 102 PISIFPFRSLRVLELRGCDLST--AKGLQELRHQLEKLIC-HNSLDALRHVFASCGGDISNSPV--WNKLATASFSYNRL 176 (1096)
T ss_pred CceeccccceeeEEecCcchhh--hhhhHHHHHhhhhhhh-hccHHHHHHHHHHhccccccchh--hhhHhhhhcchhhH
Confidence 4455667788888888887763 1112111 12333321 22211 12211111 23566667777776
Q ss_pred cccccccccCCCCCCEEeccCCcCcccCCccccccccccccCCCCcccccceEEeeccCcchhccccCcccEEEccCCcC
Q 048006 595 HGKIPFQLCQLAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKDKLMLTWKGSEREYRSTLGLVKSLELSNNNL 674 (833)
Q Consensus 595 ~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l 674 (833)
. ....++.-++.|+.|||++|++...- .+ ..++.|+.|||++|.+
T Consensus 177 ~-~mD~SLqll~ale~LnLshNk~~~v~--~L--------------------------------r~l~~LkhLDlsyN~L 221 (1096)
T KOG1859|consen 177 V-LMDESLQLLPALESLNLSHNKFTKVD--NL--------------------------------RRLPKLKHLDLSYNCL 221 (1096)
T ss_pred H-hHHHHHHHHHHhhhhccchhhhhhhH--HH--------------------------------Hhcccccccccccchh
Confidence 6 44556666677777777777765221 22 2234447777777777
Q ss_pred CCCCch-hhhcccCCcEEECCCccccccCCcccCCCCCCCEEeCCCCcCcccC-CccccCCCCCCEEECcCCcCccC
Q 048006 675 NGAVPE-EIMDLVGLVALNLSKNHLTGQISPKIGQLKSLDFLDLSRNQLVGGI-PSSLSQLSGLSVMDLSYNNLSGK 749 (833)
Q Consensus 675 ~~~~p~-~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~-p~~l~~l~~L~~L~ls~N~l~g~ 749 (833)
. .+|. ....+. |+.|++++|.++.. ..+.++.+|+.||+++|-|.+.- -..+..|..|+.|+|.+|++.+.
T Consensus 222 ~-~vp~l~~~gc~-L~~L~lrnN~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c~ 294 (1096)
T KOG1859|consen 222 R-HVPQLSMVGCK-LQLLNLRNNALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCCA 294 (1096)
T ss_pred c-cccccchhhhh-heeeeecccHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccccC
Confidence 6 3443 222333 77777777777644 45666777777777777766431 12234455667777777777653
No 45
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.50 E-value=9.4e-10 Score=106.16 Aligned_cols=181 Identities=24% Similarity=0.217 Sum_probs=96.5
Q ss_pred CCEEEccCCCCCC-CCCcccCCccccceecccCccCCCCCCcccccCCCCCcEEecCCCCCCCCchhHHhhcCCCCCCEE
Q 048006 114 LRYLDLFGTVFAG-PIPPQLGNLSRLQHLDLGSNYLFSTGNLDWLSHLSYLRYLNLDESNLANSSDWFQVIGKLHSLKTL 192 (833)
Q Consensus 114 L~~L~Ls~n~l~~-~~p~~~~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~l~~l~~L~~L 192 (833)
|++||||...|+. .+-.-++.|++|+.|.|.++++.. .....+++-.+|+.|+++.+.--.....--.+..|+.|++|
T Consensus 187 lq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD-~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 187 LQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDD-PIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCc-HHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 5555555544431 111223444555555555554432 11223445555555555554321111233345667777777
Q ss_pred EccCCCCCCCCCccccccccCCCCCEEEccCCcCC--CCCCCcc-cccccCCcEEEccCcc-ccccccccccCCCCCcEE
Q 048006 193 SLHSCYLPPVIPLSLNHLNSSTSLETLVLSDNNLT--SSIYPWL-PNISSIFISIDLGFNQ-LQGSIPESFQHMVYLEHL 268 (833)
Q Consensus 193 ~Ls~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~--~~~~~~l-~~l~~~L~~L~Ls~n~-l~~~~p~~~~~l~~L~~L 268 (833)
++++|.+....-. .....--++|+.|+|+++.-. ....+.+ ...++ +.+|||+.|. ++...-..|.+++.|++|
T Consensus 266 NlsWc~l~~~~Vt-v~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~-l~~LDLSD~v~l~~~~~~~~~kf~~L~~l 343 (419)
T KOG2120|consen 266 NLSWCFLFTEKVT-VAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPN-LVHLDLSDSVMLKNDCFQEFFKFNYLQHL 343 (419)
T ss_pred CchHhhccchhhh-HHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCc-eeeeccccccccCchHHHHHHhcchheee
Confidence 7777766543211 011112266777777765321 1111122 23444 7788888765 444444567788999999
Q ss_pred ECcCCccccccccc---ccCCCCCcEEEccCCCC
Q 048006 269 RLSFNELEGGIPKF---FGNMCSLITLNLSNNKL 299 (833)
Q Consensus 269 ~L~~n~l~~~~p~~---l~~l~~L~~L~Ls~n~l 299 (833)
.++.|.. ++|.. +...|.|.+|++.++--
T Consensus 344 SlsRCY~--i~p~~~~~l~s~psl~yLdv~g~vs 375 (419)
T KOG2120|consen 344 SLSRCYD--IIPETLLELNSKPSLVYLDVFGCVS 375 (419)
T ss_pred ehhhhcC--CChHHeeeeccCcceEEEEeccccC
Confidence 9998864 45553 56788999999988743
No 46
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.49 E-value=1.7e-09 Score=116.31 Aligned_cols=195 Identities=29% Similarity=0.319 Sum_probs=128.5
Q ss_pred CcccEEEcCCCcCcCCC-CCcccCCCCCcEEEccCCcccccCCCCccCc-CCccEEEcccCcCc----------cccCcc
Q 048006 485 SKLTYVDLSSNLLSGKL-PDCWWTFDSLVILNLENNSFSGRIPDSMGFL-QNIQTLSLHNNRLT----------GELSSS 552 (833)
Q Consensus 485 ~~L~~L~ls~n~l~~~~-~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l-~~L~~L~L~~n~l~----------~~~~~~ 552 (833)
++++.+.+-.-.-.+.. |-.+..+.+|+.|.+.++.+.. . ..+..+ ..|++|.-. |.+. |.+..+
T Consensus 84 qkt~~lkl~~~pa~~pt~pi~ifpF~sLr~LElrg~~L~~-~-~GL~~lr~qLe~LIC~-~Sl~Al~~v~ascggd~~ns 160 (1096)
T KOG1859|consen 84 QKTKVLKLLPSPARDPTEPISIFPFRSLRVLELRGCDLST-A-KGLQELRHQLEKLICH-NSLDALRHVFASCGGDISNS 160 (1096)
T ss_pred hhheeeeecccCCCCCCCCceeccccceeeEEecCcchhh-h-hhhHHHHHhhhhhhhh-ccHHHHHHHHHHhccccccc
Confidence 45555554433222222 4456678899999999998873 1 122221 245555333 2222 111111
Q ss_pred ccCCCCCcEeccCCCccCCCCCcchhhcCCccceEEecCCcccccccccccCCCCCCEEeccCCcCcccCCcc-cccccc
Q 048006 553 FRNCSQLRLLDLGKNALYGEIPTWMGESLSNLIVLSLKSNKFHGKIPFQLCQLAFLQVLDLSLNNISGKIPKC-FNNFTA 631 (833)
Q Consensus 553 ~~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~-~~~l~~ 631 (833)
+ -...|...+.+.|.+. .+...+. -++.|+.|+|++|+++... .+..++.|+.|||++|.+. .+|.. ...
T Consensus 161 ~-~Wn~L~~a~fsyN~L~-~mD~SLq-ll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~-~vp~l~~~g--- 231 (1096)
T KOG1859|consen 161 P-VWNKLATASFSYNRLV-LMDESLQ-LLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLR-HVPQLSMVG--- 231 (1096)
T ss_pred h-hhhhHhhhhcchhhHH-hHHHHHH-HHHHhhhhccchhhhhhhH--HHHhcccccccccccchhc-cccccchhh---
Confidence 1 1235788899999987 6666655 5889999999999998543 7888999999999999987 33321 111
Q ss_pred ccccCCCCcccccceEEeeccCcchhccccCcccEEEccCCcCCCCCchhhhcccCCcEEECCCccccccCC-cccCCCC
Q 048006 632 MTQERSSDPTIKDKLMLTWKGSEREYRSTLGLVKSLELSNNNLNGAVPEEIMDLVGLVALNLSKNHLTGQIS-PKIGQLK 710 (833)
Q Consensus 632 L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p-~~l~~l~ 710 (833)
+ .|+.|.+++|.++. -..+.++.+|+.||+++|-|.+.-. .-+..+.
T Consensus 232 -----------------------------c-~L~~L~lrnN~l~t--L~gie~LksL~~LDlsyNll~~hseL~pLwsLs 279 (1096)
T KOG1859|consen 232 -----------------------------C-KLQLLNLRNNALTT--LRGIENLKSLYGLDLSYNLLSEHSELEPLWSLS 279 (1096)
T ss_pred -----------------------------h-hheeeeecccHHHh--hhhHHhhhhhhccchhHhhhhcchhhhHHHHHH
Confidence 1 25889999999873 3457889999999999998875422 2245567
Q ss_pred CCCEEeCCCCcCc
Q 048006 711 SLDFLDLSRNQLV 723 (833)
Q Consensus 711 ~L~~L~Ls~N~l~ 723 (833)
.|+.|+|.+|.+-
T Consensus 280 ~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 280 SLIVLWLEGNPLC 292 (1096)
T ss_pred HHHHHhhcCCccc
Confidence 8999999999986
No 47
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.36 E-value=1.4e-08 Score=98.24 Aligned_cols=225 Identities=25% Similarity=0.246 Sum_probs=140.8
Q ss_pred CEEeCCCCCCCCCCccccccCCC--CCCEEEccCCCCCCC-CCcccCCc-cccceecccCccCCCCCCcccccCCCCCcE
Q 048006 90 RHLNLSFNDFSGSPIPEFIGSLS--KLRYLDLFGTVFAGP-IPPQLGNL-SRLQHLDLGSNYLFSTGNLDWLSHLSYLRY 165 (833)
Q Consensus 90 ~~L~Ls~n~~~~~~~p~~~~~l~--~L~~L~Ls~n~l~~~-~p~~~~~l-~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~ 165 (833)
+.||+.+-.|. |..++.+. ...++.+....+... +.+.+.-. +.||+||||.-.|+.......++.+.+|+.
T Consensus 139 ~~lDl~~r~i~----p~~l~~l~~rgV~v~Rlar~~~~~prlae~~~~frsRlq~lDLS~s~it~stl~~iLs~C~kLk~ 214 (419)
T KOG2120|consen 139 QTLDLTGRNIH----PDVLGRLLSRGVIVFRLARSFMDQPRLAEHFSPFRSRLQHLDLSNSVITVSTLHGILSQCSKLKN 214 (419)
T ss_pred eeeccCCCccC----hhHHHHHHhCCeEEEEcchhhhcCchhhhhhhhhhhhhHHhhcchhheeHHHHHHHHHHHHhhhh
Confidence 45666665554 33344332 334444444333322 22222212 469999999887764333345788999999
Q ss_pred EecCCCCCCCCchhHHhhcCCCCCCEEEccCCCCCCCCCccccccccCCCCCEEEccCCcCCCCC-CCcccccccCCcEE
Q 048006 166 LNLDESNLANSSDWFQVIGKLHSLKTLSLHSCYLPPVIPLSLNHLNSSTSLETLVLSDNNLTSSI-YPWLPNISSIFISI 244 (833)
Q Consensus 166 L~Ls~n~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~-~~~l~~l~~~L~~L 244 (833)
|.+.++++.+ .+...+++-.+|+.|+++.|.--...... -++..++.|..|+|++|.+.... ...+......++.|
T Consensus 215 lSlEg~~LdD--~I~~~iAkN~~L~~lnlsm~sG~t~n~~~-ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~L 291 (419)
T KOG2120|consen 215 LSLEGLRLDD--PIVNTIAKNSNLVRLNLSMCSGFTENALQ-LLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQL 291 (419)
T ss_pred ccccccccCc--HHHHHHhccccceeeccccccccchhHHH-HHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhh
Confidence 9999999988 57788899999999999987532221111 23344588999999999876432 22233444447888
Q ss_pred EccCccc---cccccccccCCCCCcEEECcCC-cccccccccccCCCCCcEEEccCCCCCchhhHHHhhcCCccccCCcc
Q 048006 245 DLGFNQL---QGSIPESFQHMVYLEHLRLSFN-ELEGGIPKFFGNMCSLITLNLSNNKLSGQLSEIIQNLSSGCLENSLK 320 (833)
Q Consensus 245 ~Ls~n~l---~~~~p~~~~~l~~L~~L~L~~n-~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~~~~~~L~ 320 (833)
+++++.- ...+..-...+++|.+|||++| .++......|..++.|++|.++.|.. .+|..+-.+.+ .++|.
T Consensus 292 NlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~--i~p~~~~~l~s---~psl~ 366 (419)
T KOG2120|consen 292 NLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYD--IIPETLLELNS---KPSLV 366 (419)
T ss_pred hhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcC--CChHHeeeecc---CcceE
Confidence 8887642 1122223457899999999987 44444445677889999999998863 45654443321 11888
Q ss_pred EEEccc
Q 048006 321 SLYLEN 326 (833)
Q Consensus 321 ~L~L~~ 326 (833)
+|++.+
T Consensus 367 yLdv~g 372 (419)
T KOG2120|consen 367 YLDVFG 372 (419)
T ss_pred EEEecc
Confidence 888833
No 48
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.27 E-value=6.5e-08 Score=93.70 Aligned_cols=90 Identities=23% Similarity=0.221 Sum_probs=61.9
Q ss_pred cCCCCCCEEeCCCCCCCCCC-ccccccCCCCCCEEEccCCCCCCCCCcccCCccccceecccCccCCCCCCcccccCCCC
Q 048006 84 LKLHDLRHLNLSFNDFSGSP-IPEFIGSLSKLRYLDLFGTVFAGPIPPQLGNLSRLQHLDLGSNYLFSTGNLDWLSHLSY 162 (833)
Q Consensus 84 ~~l~~L~~L~Ls~n~~~~~~-~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~ 162 (833)
...++++.|||.+|.|+... +-..+.++++|++|+||.|.+...+-..=..+.+|++|-|.+..+.-......+..++.
T Consensus 68 ~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~ 147 (418)
T KOG2982|consen 68 SSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPK 147 (418)
T ss_pred HHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchh
Confidence 35678899999999888641 33445788999999999998874332111345688888888877654444455667777
Q ss_pred CcEEecCCCCC
Q 048006 163 LRYLNLDESNL 173 (833)
Q Consensus 163 L~~L~Ls~n~~ 173 (833)
+++|++|.|.+
T Consensus 148 vtelHmS~N~~ 158 (418)
T KOG2982|consen 148 VTELHMSDNSL 158 (418)
T ss_pred hhhhhhccchh
Confidence 77777777743
No 49
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.23 E-value=2.4e-07 Score=89.90 Aligned_cols=93 Identities=23% Similarity=0.292 Sum_probs=61.0
Q ss_pred cCCccccceecccCccCCCCCCccccc-CCCCCcEEecCCCCCCCCchhHHhhcCCCCCCEEEccCCCCCCCCCcccccc
Q 048006 132 LGNLSRLQHLDLGSNYLFSTGNLDWLS-HLSYLRYLNLDESNLANSSDWFQVIGKLHSLKTLSLHSCYLPPVIPLSLNHL 210 (833)
Q Consensus 132 ~~~l~~L~~L~Ls~n~~~~~~~~~~l~-~l~~L~~L~Ls~n~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~ 210 (833)
+..+.-++.|-+.++.|...+....++ ..+.++++||.+|.+++-.++...+.++|.|+.|+++.|.+...|.. .-.
T Consensus 41 v~s~ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~--lp~ 118 (418)
T KOG2982|consen 41 VSSLRALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKS--LPL 118 (418)
T ss_pred eccccchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCcccc--Ccc
Confidence 333445555666666665444444443 45778888888888888777777788888888888888888766542 111
Q ss_pred ccCCCCCEEEccCCcCC
Q 048006 211 NSSTSLETLVLSDNNLT 227 (833)
Q Consensus 211 ~~~~~L~~L~Ls~n~l~ 227 (833)
.. .+|+.|-|.+..+.
T Consensus 119 p~-~nl~~lVLNgT~L~ 134 (418)
T KOG2982|consen 119 PL-KNLRVLVLNGTGLS 134 (418)
T ss_pred cc-cceEEEEEcCCCCC
Confidence 22 67777777766554
No 50
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.23 E-value=5.4e-08 Score=83.22 Aligned_cols=57 Identities=37% Similarity=0.492 Sum_probs=26.8
Q ss_pred cEEEccCCcCCCCCchhhhcccCCcEEECCCccccccCCcccCCCCCCCEEeCCCCcCc
Q 048006 665 KSLELSNNNLNGAVPEEIMDLVGLVALNLSKNHLTGQISPKIGQLKSLDFLDLSRNQLV 723 (833)
Q Consensus 665 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 723 (833)
+.|++++|.++ .+|.++..++.|+.|+++.|.+. ..|..+..+.++-.||..+|.+.
T Consensus 80 t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~ 136 (177)
T KOG4579|consen 80 TTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA 136 (177)
T ss_pred hhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCCCCccc
Confidence 44444444444 34444444455555555555444 33444444444444444444444
No 51
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.15 E-value=1.3e-07 Score=80.93 Aligned_cols=61 Identities=21% Similarity=0.393 Sum_probs=33.7
Q ss_pred CCCcEeccCCCccCCCCCcchhhcCCccceEEecCCcccccccccccCCCCCCEEeccCCcCc
Q 048006 557 SQLRLLDLGKNALYGEIPTWMGESLSNLIVLSLKSNKFHGKIPFQLCQLAFLQVLDLSLNNIS 619 (833)
Q Consensus 557 ~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~ 619 (833)
..|+..+|++|.+. .+|..+...++.++.|++++|.++ .+|..+..++.|+.|+++.|++.
T Consensus 53 ~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~ 113 (177)
T KOG4579|consen 53 YELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN 113 (177)
T ss_pred ceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc
Confidence 34444555555555 555555444555555666666555 45555555555555555555554
No 52
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.00 E-value=5.6e-07 Score=86.21 Aligned_cols=47 Identities=13% Similarity=0.350 Sum_probs=26.9
Q ss_pred hhcCCCCCCEEECcCCccccccCCCccCCccccEEEccCccCCCCCChhhcccccccEEeecCCccc
Q 048006 336 FFSNISNLKELHLANNPLVLKLSHDWVPPFQLIIISLSSCKIGPHFPKWLQTQNQIELLDISNTGIS 402 (833)
Q Consensus 336 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~n~i~ 402 (833)
++.+||.|+..+||+|.+....+.. +.+.+..-+.|++|.+++|++.
T Consensus 87 aLlkcp~l~~v~LSDNAfg~~~~e~--------------------L~d~is~~t~l~HL~l~NnGlG 133 (388)
T COG5238 87 ALLKCPRLQKVDLSDNAFGSEFPEE--------------------LGDLISSSTDLVHLKLNNNGLG 133 (388)
T ss_pred HHhcCCcceeeeccccccCcccchH--------------------HHHHHhcCCCceeEEeecCCCC
Confidence 4566777777777777665433221 1123445566666666666654
No 53
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.99 E-value=1.9e-06 Score=82.69 Aligned_cols=36 Identities=19% Similarity=0.392 Sum_probs=17.7
Q ss_pred CccccceecccCccCCCCCCcc----cccCCCCCcEEecCC
Q 048006 134 NLSRLQHLDLGSNYLFSTGNLD----WLSHLSYLRYLNLDE 170 (833)
Q Consensus 134 ~l~~L~~L~Ls~n~~~~~~~~~----~l~~l~~L~~L~Ls~ 170 (833)
.+..++.+|||+|.|.. .... .+++-.+|+..+++.
T Consensus 28 ~~d~~~evdLSGNtigt-EA~e~l~~~ia~~~~L~vvnfsd 67 (388)
T COG5238 28 MMDELVEVDLSGNTIGT-EAMEELCNVIANVRNLRVVNFSD 67 (388)
T ss_pred hhcceeEEeccCCcccH-HHHHHHHHHHhhhcceeEeehhh
Confidence 35566666666666532 1111 133445555555544
No 54
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.94 E-value=4.8e-07 Score=92.15 Aligned_cols=283 Identities=20% Similarity=0.185 Sum_probs=138.9
Q ss_pred CCCEEeCCCCCCCCC-CccccccCCCCCCEEEccCCCCCC-CCCccc-CCccccceecccCccCCCCCCcc-cccCCCCC
Q 048006 88 DLRHLNLSFNDFSGS-PIPEFIGSLSKLRYLDLFGTVFAG-PIPPQL-GNLSRLQHLDLGSNYLFSTGNLD-WLSHLSYL 163 (833)
Q Consensus 88 ~L~~L~Ls~n~~~~~-~~p~~~~~l~~L~~L~Ls~n~l~~-~~p~~~-~~l~~L~~L~Ls~n~~~~~~~~~-~l~~l~~L 163 (833)
.||.|.+.++.=.+. .+-.+-..++++++|++.++.... ..-..+ ..+++|++|+|..|......... ....+++|
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL 218 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL 218 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence 577777877753332 233445678888888888876321 111112 45788888888876432111111 34568888
Q ss_pred cEEecCCCCCCCCchhHHhhcCCCCCCEEEccCCCCCCCCCccccccccCCCCCEEEccCCc-CCCCCCCcccc-cccCC
Q 048006 164 RYLNLDESNLANSSDWFQVIGKLHSLKTLSLHSCYLPPVIPLSLNHLNSSTSLETLVLSDNN-LTSSIYPWLPN-ISSIF 241 (833)
Q Consensus 164 ~~L~Ls~n~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~-l~~~~~~~l~~-l~~~L 241 (833)
++|+++++.-.....+-.-..+++.++.+.+.+|.=.+.-.. ......+..+.++++.++. +++.---.+.. ... +
T Consensus 219 ~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l-~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~-l 296 (483)
T KOG4341|consen 219 KYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEAL-LKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHA-L 296 (483)
T ss_pred HHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHH-HHHhccChHhhccchhhhccccchHHHHHhhhhhH-h
Confidence 888888876433334444556677777777766532111000 0111112345555554542 22211001111 112 4
Q ss_pred cEEEccCccc-cccccccc-cCCCCCcEEECcCCc-cccccccccc-CCCCCcEEEccCCCCCchhhHHHhhcCCccccC
Q 048006 242 ISIDLGFNQL-QGSIPESF-QHMVYLEHLRLSFNE-LEGGIPKFFG-NMCSLITLNLSNNKLSGQLSEIIQNLSSGCLEN 317 (833)
Q Consensus 242 ~~L~Ls~n~l-~~~~p~~~-~~l~~L~~L~L~~n~-l~~~~p~~l~-~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~~~~~ 317 (833)
+.|+.+++.- +...-.++ .+..+|+.|.++.++ ++..--..++ +.+.|+.+++..+..... ..+..+.
T Consensus 297 q~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d--~tL~sls------ 368 (483)
T KOG4341|consen 297 QVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITD--GTLASLS------ 368 (483)
T ss_pred hhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehh--hhHhhhc------
Confidence 5555544432 11111112 245556666666554 2221111222 445555555555443211 1122222
Q ss_pred CccEEEcccccccccChhhhcCCCCCCEEECcCCcccccc-----CCCccCCccccEEEccCccCC-CCCChhhcccccc
Q 048006 318 SLKSLYLENSLTGVISESFFSNISNLKELHLANNPLVLKL-----SHDWVPPFQLIIISLSSCKIG-PHFPKWLQTQNQI 391 (833)
Q Consensus 318 ~L~~L~L~~~~~~~i~~~~~~~l~~L~~L~L~~n~l~~~~-----~~~~~~~~~L~~L~L~~~~l~-~~~~~~l~~l~~L 391 (833)
.+++.|+.+.++.+...... ...-.....++.+.+++|... ...-..+..+++|
T Consensus 369 --------------------~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~L 428 (483)
T KOG4341|consen 369 --------------------RNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNL 428 (483)
T ss_pred --------------------cCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCccc
Confidence 45677777777766433221 111233456777777777543 3344455667777
Q ss_pred cEEeecCCc
Q 048006 392 ELLDISNTG 400 (833)
Q Consensus 392 ~~L~Ls~n~ 400 (833)
+.+++-++.
T Consensus 429 eri~l~~~q 437 (483)
T KOG4341|consen 429 ERIELIDCQ 437 (483)
T ss_pred ceeeeechh
Confidence 777777764
No 55
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.92 E-value=2.3e-05 Score=82.48 Aligned_cols=76 Identities=11% Similarity=0.127 Sum_probs=51.0
Q ss_pred ccCcCCccEEEcccCcCccccCccccCCCCCcEeccCCCccCCCCCcchhhcCCccceEEecCC-cccccccccccCCCC
Q 048006 529 MGFLQNIQTLSLHNNRLTGELSSSFRNCSQLRLLDLGKNALYGEIPTWMGESLSNLIVLSLKSN-KFHGKIPFQLCQLAF 607 (833)
Q Consensus 529 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~N-~l~~~~~~~l~~l~~ 607 (833)
+..+.+++.|++++|.++ .+|. --++|+.|.+++|.-...+|..+ .++|++|++++| .+. .+| .+
T Consensus 48 ~~~~~~l~~L~Is~c~L~-sLP~---LP~sLtsL~Lsnc~nLtsLP~~L---P~nLe~L~Ls~Cs~L~-sLP------~s 113 (426)
T PRK15386 48 IEEARASGRLYIKDCDIE-SLPV---LPNELTEITIENCNNLTTLPGSI---PEGLEKLTVCHCPEIS-GLP------ES 113 (426)
T ss_pred HHHhcCCCEEEeCCCCCc-ccCC---CCCCCcEEEccCCCCcccCCchh---hhhhhheEccCccccc-ccc------cc
Confidence 444678889999999877 3452 22468899998865444677643 357888999888 443 344 34
Q ss_pred CCEEeccCCcC
Q 048006 608 LQVLDLSLNNI 618 (833)
Q Consensus 608 L~~L~Ls~N~l 618 (833)
|+.|+++.+..
T Consensus 114 Le~L~L~~n~~ 124 (426)
T PRK15386 114 VRSLEIKGSAT 124 (426)
T ss_pred cceEEeCCCCC
Confidence 77777776554
No 56
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.84 E-value=4.5e-06 Score=95.53 Aligned_cols=116 Identities=21% Similarity=0.221 Sum_probs=54.0
Q ss_pred CCCCCEEEccCCCCCC-CCCcccCCccccceecccCccCCCCCCcccccCCCCCcEEecCCCCCCCCchhHHhhcCCCCC
Q 048006 111 LSKLRYLDLFGTVFAG-PIPPQLGNLSRLQHLDLGSNYLFSTGNLDWLSHLSYLRYLNLDESNLANSSDWFQVIGKLHSL 189 (833)
Q Consensus 111 l~~L~~L~Ls~n~l~~-~~p~~~~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~l~~l~~L 189 (833)
||+|+.|.+++-.+.. .+-....++++|..||+|+..+ .....++.|++|+.|.+.+-.+.....+ ..+-++++|
T Consensus 147 LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI---~nl~GIS~LknLq~L~mrnLe~e~~~~l-~~LF~L~~L 222 (699)
T KOG3665|consen 147 LPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNI---SNLSGISRLKNLQVLSMRNLEFESYQDL-IDLFNLKKL 222 (699)
T ss_pred CcccceEEecCceecchhHHHHhhccCccceeecCCCCc---cCcHHHhccccHHHHhccCCCCCchhhH-HHHhcccCC
Confidence 4555555555544321 1112223445555555555554 2234455555555555555444443222 334455555
Q ss_pred CEEEccCCCCCCCC--C-ccccccccCCCCCEEEccCCcCCCCC
Q 048006 190 KTLSLHSCYLPPVI--P-LSLNHLNSSTSLETLVLSDNNLTSSI 230 (833)
Q Consensus 190 ~~L~Ls~n~l~~~~--~-~~~~~~~~~~~L~~L~Ls~n~l~~~~ 230 (833)
+.||+|........ . ..++....+++|+.||.|++.+...+
T Consensus 223 ~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~ 266 (699)
T KOG3665|consen 223 RVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEI 266 (699)
T ss_pred CeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHH
Confidence 55555554432221 0 00112222477777777777766544
No 57
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.83 E-value=7.1e-06 Score=79.19 Aligned_cols=115 Identities=23% Similarity=0.236 Sum_probs=78.8
Q ss_pred eecCccccCCCCCCEEeCCCCCCCCCCccccccCCCCCCEEEccCC--CCCCCCCcccCCccccceecccCccCCCCCCc
Q 048006 77 GTISPALLKLHDLRHLNLSFNDFSGSPIPEFIGSLSKLRYLDLFGT--VFAGPIPPQLGNLSRLQHLDLGSNYLFSTGNL 154 (833)
Q Consensus 77 ~~~~~~l~~l~~L~~L~Ls~n~~~~~~~p~~~~~l~~L~~L~Ls~n--~l~~~~p~~~~~l~~L~~L~Ls~n~~~~~~~~ 154 (833)
|.+..-.-.+..|+.|++.+..++.. ..+-.|++|++|.+|.| ++++.++.-...+++|++|++++|.+......
T Consensus 33 g~~~gl~d~~~~le~ls~~n~gltt~---~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl 109 (260)
T KOG2739|consen 33 GKLGGLTDEFVELELLSVINVGLTTL---TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTL 109 (260)
T ss_pred CCcccccccccchhhhhhhccceeec---ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccccccc
Confidence 33444455566677777777777643 34567889999999999 67766766667779999999999988765666
Q ss_pred ccccCCCCCcEEecCCCCCCCCchhH-HhhcCCCCCCEEEc
Q 048006 155 DWLSHLSYLRYLNLDESNLANSSDWF-QVIGKLHSLKTLSL 194 (833)
Q Consensus 155 ~~l~~l~~L~~L~Ls~n~~~~~~~~~-~~l~~l~~L~~L~L 194 (833)
..+..+.+|..|++++|..+....-- ..+.-+++|++|+-
T Consensus 110 ~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~ 150 (260)
T KOG2739|consen 110 RPLKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDG 150 (260)
T ss_pred chhhhhcchhhhhcccCCccccccHHHHHHHHhhhhccccc
Confidence 67777888888888887766542211 22344556665543
No 58
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.79 E-value=1.3e-05 Score=55.84 Aligned_cols=35 Identities=37% Similarity=0.660 Sum_probs=12.7
Q ss_pred CcEEECCCccccccCCcccCCCCCCCEEeCCCCcCc
Q 048006 688 LVALNLSKNHLTGQISPKIGQLKSLDFLDLSRNQLV 723 (833)
Q Consensus 688 L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 723 (833)
|++|++++|+|+ .+|+.++++++|+.|++++|+++
T Consensus 3 L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 3 LEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp -SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred ceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 333444444443 22223334444444444444433
No 59
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.74 E-value=5.1e-05 Score=70.13 Aligned_cols=106 Identities=26% Similarity=0.296 Sum_probs=63.5
Q ss_pred CCCEEeCCCCCCCCCCccccccCCCCCCEEEccCCCCCCCCCcccCCccccceecccCccCCCCCCcccccCCCCCcEEe
Q 048006 88 DLRHLNLSFNDFSGSPIPEFIGSLSKLRYLDLFGTVFAGPIPPQLGNLSRLQHLDLGSNYLFSTGNLDWLSHLSYLRYLN 167 (833)
Q Consensus 88 ~L~~L~Ls~n~~~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~ 167 (833)
....+||++|.+... +.|..+++|.+|.|++|+|+..-|.--.-+++|+.|.|.+|++...+....+..+++|++|.
T Consensus 43 ~~d~iDLtdNdl~~l---~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Lt 119 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKL---DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLT 119 (233)
T ss_pred ccceecccccchhhc---ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceee
Confidence 345677777777632 44666777777777777777555543344566777777777776666666666666777776
Q ss_pred cCCCCCCCCchhH-HhhcCCCCCCEEEccC
Q 048006 168 LDESNLANSSDWF-QVIGKLHSLKTLSLHS 196 (833)
Q Consensus 168 Ls~n~~~~~~~~~-~~l~~l~~L~~L~Ls~ 196 (833)
+-+|..+.....- ..+..+++|+.||...
T Consensus 120 ll~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 120 LLGNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred ecCCchhcccCceeEEEEecCcceEeehhh
Confidence 6666665431110 1234444555554443
No 60
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.74 E-value=3.2e-05 Score=53.84 Aligned_cols=36 Identities=28% Similarity=0.457 Sum_probs=21.2
Q ss_pred CCCEEeCCCCCCCCCCccccccCCCCCCEEEccCCCCC
Q 048006 88 DLRHLNLSFNDFSGSPIPEFIGSLSKLRYLDLFGTVFA 125 (833)
Q Consensus 88 ~L~~L~Ls~n~~~~~~~p~~~~~l~~L~~L~Ls~n~l~ 125 (833)
+|++|++++|+|+ .+|..+++|++|++|++++|.++
T Consensus 2 ~L~~L~l~~N~i~--~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT--DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S--SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc--ccCchHhCCCCCCEEEecCCCCC
Confidence 5666666666666 35555666666666666666655
No 61
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.71 E-value=3e-05 Score=71.58 Aligned_cols=130 Identities=23% Similarity=0.221 Sum_probs=89.5
Q ss_pred CCEEeCCCCCCCCCCcccccc-CCCCCCEEEccCCCCCCCCCcccCCccccceecccCccCCCCCCcccccCCCCCcEEe
Q 048006 89 LRHLNLSFNDFSGSPIPEFIG-SLSKLRYLDLFGTVFAGPIPPQLGNLSRLQHLDLGSNYLFSTGNLDWLSHLSYLRYLN 167 (833)
Q Consensus 89 L~~L~Ls~n~~~~~~~p~~~~-~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~ 167 (833)
=+.++|.+.++..+ ..++ -+.+...+||++|.+.. + ..|..+++|.+|.|++|+|+. ..+..-..+++|+.|.
T Consensus 21 e~e~~LR~lkip~i---enlg~~~d~~d~iDLtdNdl~~-l-~~lp~l~rL~tLll~nNrIt~-I~p~L~~~~p~l~~L~ 94 (233)
T KOG1644|consen 21 ERELDLRGLKIPVI---ENLGATLDQFDAIDLTDNDLRK-L-DNLPHLPRLHTLLLNNNRITR-IDPDLDTFLPNLKTLI 94 (233)
T ss_pred ccccccccccccch---hhccccccccceecccccchhh-c-ccCCCccccceEEecCCccee-eccchhhhccccceEE
Confidence 45667776665432 1122 24567789999998763 3 347788899999999999875 3333445577899999
Q ss_pred cCCCCCCCCchhHHhhcCCCCCCEEEccCCCCCCCCCccccccccCCCCCEEEccCCc
Q 048006 168 LDESNLANSSDWFQVIGKLHSLKTLSLHSCYLPPVIPLSLNHLNSSTSLETLVLSDNN 225 (833)
Q Consensus 168 Ls~n~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~ 225 (833)
|.+|.+....++ ..+..|++|++|.+-+|.....---..-+...+++|+.||..+-.
T Consensus 95 LtnNsi~~l~dl-~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 95 LTNNSIQELGDL-DPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVT 151 (233)
T ss_pred ecCcchhhhhhc-chhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhhh
Confidence 999988776444 457788999999998887765433222344556889999887654
No 62
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.52 E-value=5.5e-05 Score=86.79 Aligned_cols=125 Identities=15% Similarity=0.141 Sum_probs=61.7
Q ss_pred hHHhhcC-CCCCCEEEccCCCCCCCCCccccccccCCCCCEEEccCCcCCCCCCCcccccccCCcEEEccCccccc-ccc
Q 048006 179 WFQVIGK-LHSLKTLSLHSCYLPPVIPLSLNHLNSSTSLETLVLSDNNLTSSIYPWLPNISSIFISIDLGFNQLQG-SIP 256 (833)
Q Consensus 179 ~~~~l~~-l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~~L~~L~Ls~n~l~~-~~p 256 (833)
|+..++. +|+|+.|.+++-.+.... .......+++|..||+|+..++.. ..+..+.+ |+.|.+.+=.+.. ..-
T Consensus 139 W~~kig~~LPsL~sL~i~~~~~~~~d--F~~lc~sFpNL~sLDIS~TnI~nl--~GIS~Lkn-Lq~L~mrnLe~e~~~~l 213 (699)
T KOG3665|consen 139 WPKKIGTMLPSLRSLVISGRQFDNDD--FSQLCASFPNLRSLDISGTNISNL--SGISRLKN-LQVLSMRNLEFESYQDL 213 (699)
T ss_pred HHHHHhhhCcccceEEecCceecchh--HHHHhhccCccceeecCCCCccCc--HHHhcccc-HHHHhccCCCCCchhhH
Confidence 4444433 345555544443332221 112223335555555555544432 33344444 4444444333332 111
Q ss_pred ccccCCCCCcEEECcCCcccccc------cccccCCCCCcEEEccCCCCCchhhHHHh
Q 048006 257 ESFQHMVYLEHLRLSFNELEGGI------PKFFGNMCSLITLNLSNNKLSGQLSEIIQ 308 (833)
Q Consensus 257 ~~~~~l~~L~~L~L~~n~l~~~~------p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~ 308 (833)
..+.++++|+.||+|..+..... -+.-..+|+|+.||.|+..+.+..-+.+-
T Consensus 214 ~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll 271 (699)
T KOG3665|consen 214 IDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELL 271 (699)
T ss_pred HHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHH
Confidence 34567788888888876544211 12223578888999888887766554443
No 63
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.42 E-value=0.0006 Score=72.00 Aligned_cols=53 Identities=15% Similarity=0.206 Sum_probs=24.5
Q ss_pred CcccEEEcCCCcCcCCCCCcccCCCCCcEEEccCCcccccCCCCccCcCCccEEEcccC
Q 048006 485 SKLTYVDLSSNLLSGKLPDCWWTFDSLVILNLENNSFSGRIPDSMGFLQNIQTLSLHNN 543 (833)
Q Consensus 485 ~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n 543 (833)
..++.|++++|.++ .+|. -..+|+.|.++++.-...+|..+ .++|++|++++|
T Consensus 52 ~~l~~L~Is~c~L~-sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~C 104 (426)
T PRK15386 52 RASGRLYIKDCDIE-SLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHC 104 (426)
T ss_pred cCCCEEEeCCCCCc-ccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCc
Confidence 45556666665555 2231 11245566665533222334322 235555555555
No 64
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.33 E-value=1.4e-05 Score=77.24 Aligned_cols=104 Identities=27% Similarity=0.316 Sum_probs=80.2
Q ss_pred CCCCCCEEeCCCCCCCCCCccccccCCCCCCEEEccCCCCCCCCCcccCCccccceecccCccCCCCCCcccccCCCCCc
Q 048006 85 KLHDLRHLNLSFNDFSGSPIPEFIGSLSKLRYLDLFGTVFAGPIPPQLGNLSRLQHLDLGSNYLFSTGNLDWLSHLSYLR 164 (833)
Q Consensus 85 ~l~~L~~L~Ls~n~~~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~ 164 (833)
.+.+.+.|++-++.++++ ..+.+++.|++|.||-|.|+..-| +..|++|++|+|..|.|........+.++++|+
T Consensus 17 dl~~vkKLNcwg~~L~DI---sic~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr 91 (388)
T KOG2123|consen 17 DLENVKKLNCWGCGLDDI---SICEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIESLDELEYLKNLPSLR 91 (388)
T ss_pred HHHHhhhhcccCCCccHH---HHHHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhcccccHHHHHHHhcCchhh
Confidence 356778899999999876 446789999999999999985444 789999999999999987655566788899999
Q ss_pred EEecCCCCCCCCch---hHHhhcCCCCCCEEE
Q 048006 165 YLNLDESNLANSSD---WFQVIGKLHSLKTLS 193 (833)
Q Consensus 165 ~L~Ls~n~~~~~~~---~~~~l~~l~~L~~L~ 193 (833)
.|.|..|...+..+ =...+.-+|+|+.||
T Consensus 92 ~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 92 TLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 99998887654311 113456677777775
No 65
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.33 E-value=8.1e-05 Score=72.02 Aligned_cols=113 Identities=20% Similarity=0.292 Sum_probs=75.3
Q ss_pred ccccccCCCCCCEEEccCCCCCCCCCcccCCccccceecccCcc--CCCCCCcccccCCCCCcEEecCCCCCCCCchhHH
Q 048006 104 IPEFIGSLSKLRYLDLFGTVFAGPIPPQLGNLSRLQHLDLGSNY--LFSTGNLDWLSHLSYLRYLNLDESNLANSSDWFQ 181 (833)
Q Consensus 104 ~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~--~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~ 181 (833)
+....-.+..|+.|++.+..++.. ..+-.|++|++|++|.|. +.. +.......+++|++|++++|++..+..+ .
T Consensus 35 ~~gl~d~~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~-~l~vl~e~~P~l~~l~ls~Nki~~lstl-~ 110 (260)
T KOG2739|consen 35 LGGLTDEFVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSG-GLEVLAEKAPNLKVLNLSGNKIKDLSTL-R 110 (260)
T ss_pred cccccccccchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccc-cceehhhhCCceeEEeecCCcccccccc-c
Confidence 444455667778888777776531 346678999999999994 432 3334455669999999999998876444 3
Q ss_pred hhcCCCCCCEEEccCCCCCCCCCccccccccCCCCCEEE
Q 048006 182 VIGKLHSLKTLSLHSCYLPPVIPLSLNHLNSSTSLETLV 220 (833)
Q Consensus 182 ~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~ 220 (833)
.+..+.+|..|++.+|.-+......-..+..+++|++||
T Consensus 111 pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD 149 (260)
T KOG2739|consen 111 PLKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLD 149 (260)
T ss_pred hhhhhcchhhhhcccCCccccccHHHHHHHHhhhhcccc
Confidence 567788888888888876553221113344456666664
No 66
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.23 E-value=0.0012 Score=59.30 Aligned_cols=123 Identities=18% Similarity=0.259 Sum_probs=53.8
Q ss_pred CcccCCCCCcEEEccCCcccccCCCCccCcCCccEEEcccCcCccccCccccCCCCCcEeccCCCccCCCCCcchhhcCC
Q 048006 503 DCWWTFDSLVILNLENNSFSGRIPDSMGFLQNIQTLSLHNNRLTGELSSSFRNCSQLRLLDLGKNALYGEIPTWMGESLS 582 (833)
Q Consensus 503 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~l~ 582 (833)
.+|.++.+|+.+.+.. .+.......|.++++|+.+.+.++ +.......|.++++++.+.+.+ .+. .++...+..++
T Consensus 6 ~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~-~i~~~~F~~~~ 81 (129)
T PF13306_consen 6 NAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLK-SIGDNAFSNCT 81 (129)
T ss_dssp TTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT--EE-TTTTTT-T
T ss_pred HHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccc-ccccccccccc
Confidence 3455666666666653 344455555666666666666654 5545555666666677766654 332 44555554566
Q ss_pred ccceEEecCCcccccccccccCCCCCCEEeccCCcCcccCCccccccccc
Q 048006 583 NLIVLSLKSNKFHGKIPFQLCQLAFLQVLDLSLNNISGKIPKCFNNFTAM 632 (833)
Q Consensus 583 ~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L 632 (833)
+|+.+++..+ +.......+.+. .|+.+.+.. .+......+|.++++|
T Consensus 82 ~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 82 NLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL 128 (129)
T ss_dssp TECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred cccccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence 7777777554 443344455565 677776664 3333444555555443
No 67
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.22 E-value=0.00094 Score=60.03 Aligned_cols=123 Identities=24% Similarity=0.268 Sum_probs=52.1
Q ss_pred ccccCCCCCcEEECcCCcccccccccccCCCCCcEEEccCCCCCchhhHHHhhcCCccccCCccEEEcccccccccChhh
Q 048006 257 ESFQHMVYLEHLRLSFNELEGGIPKFFGNMCSLITLNLSNNKLSGQLSEIIQNLSSGCLENSLKSLYLENSLTGVISESF 336 (833)
Q Consensus 257 ~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~~~~~~L~~L~L~~~~~~~i~~~~ 336 (833)
..|.++++|+.+.+.. .+.......|.++++|+.+.+.++ +.......|..++ +++.+.+.+ ....++...
T Consensus 6 ~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~------~l~~i~~~~-~~~~i~~~~ 76 (129)
T PF13306_consen 6 NAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCK------SLESITFPN-NLKSIGDNA 76 (129)
T ss_dssp TTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-T------T-EEEEETS-TT-EE-TTT
T ss_pred HHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeeccc------ccccccccc-ccccccccc
Confidence 3456666666666653 444444555666666777766654 4444444455554 566666643 444455556
Q ss_pred hcCCCCCCEEECcCCccccccCCCccCCccccEEEccCccCCCCCChhhcccccc
Q 048006 337 FSNISNLKELHLANNPLVLKLSHDWVPPFQLIIISLSSCKIGPHFPKWLQTQNQI 391 (833)
Q Consensus 337 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L 391 (833)
|..+++|+.+++..+ +.......|... .++.+.+.. .+.......|.++++|
T Consensus 77 F~~~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 77 FSNCTNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL 128 (129)
T ss_dssp TTT-TTECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred ccccccccccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence 666777777777554 444444444444 555555544 3332333444444433
No 68
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=96.31 E-value=0.00032 Score=72.08 Aligned_cols=290 Identities=19% Similarity=0.111 Sum_probs=157.8
Q ss_pred CcEEEEECCCCCCCCCCcceecCccccCCCCCCEEeCCCCC-CCCCCccccccCCCCCCEEEccCCC-CCCCCCc-ccCC
Q 048006 58 NHVILLDLQPIDFDSFPLRGTISPALLKLHDLRHLNLSFND-FSGSPIPEFIGSLSKLRYLDLFGTV-FAGPIPP-QLGN 134 (833)
Q Consensus 58 ~~v~~l~L~~~~~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~-~~~~~~p~~~~~l~~L~~L~Ls~n~-l~~~~p~-~~~~ 134 (833)
|+.++|++.++.... ...+-....++++++.|++.++. ++....-..-..+++|++|+|-.|. ++...-. -...
T Consensus 138 g~lk~LSlrG~r~v~---~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~g 214 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVG---DSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEG 214 (483)
T ss_pred cccccccccccccCC---cchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHh
Confidence 456677777642100 00112234678888899888885 3433233334578999999998853 3322222 2356
Q ss_pred ccccceecccCccCCC-CCCcccccCCCCCcEEecCCCCCCCCchhHHhhcCCCCCCEEEccCCCCCCCCCccccccccC
Q 048006 135 LSRLQHLDLGSNYLFS-TGNLDWLSHLSYLRYLNLDESNLANSSDWFQVIGKLHSLKTLSLHSCYLPPVIPLSLNHLNSS 213 (833)
Q Consensus 135 l~~L~~L~Ls~n~~~~-~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~ 213 (833)
+++|++|++|.+.-.. .+......+++.++.+.+.+|.-.+...+-..-+.+..+.++++..|........ +.....+
T Consensus 215 C~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~-~~i~~~c 293 (483)
T KOG4341|consen 215 CRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDL-WLIACGC 293 (483)
T ss_pred hhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHH-HHHhhhh
Confidence 8999999999987432 2223346677777777777665444333333334555566666656532221110 1222334
Q ss_pred CCCCEEEccCCcCC-CCCCCcccccccCCcEEEccCcc-ccccccccc-cCCCCCcEEECcCCccccc--ccccccCCCC
Q 048006 214 TSLETLVLSDNNLT-SSIYPWLPNISSIFISIDLGFNQ-LQGSIPESF-QHMVYLEHLRLSFNELEGG--IPKFFGNMCS 288 (833)
Q Consensus 214 ~~L~~L~Ls~n~l~-~~~~~~l~~l~~~L~~L~Ls~n~-l~~~~p~~~-~~l~~L~~L~L~~n~l~~~--~p~~l~~l~~ 288 (833)
..|++|+.+++... ......++.-...|+.+-++.++ ++..--..+ .+++.|+.+++..+..... +...=.+++.
T Consensus 294 ~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~ 373 (483)
T KOG4341|consen 294 HALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPR 373 (483)
T ss_pred hHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCch
Confidence 66777777665432 22222333333337777777765 332211222 2566788888777754321 1222236778
Q ss_pred CcEEEccCCCCCchhhHHHhhcCC-ccccCCccEEEc-ccccccccChhhhcCCCCCCEEECcCCcc
Q 048006 289 LITLNLSNNKLSGQLSEIIQNLSS-GCLENSLKSLYL-ENSLTGVISESFFSNISNLKELHLANNPL 353 (833)
Q Consensus 289 L~~L~Ls~n~l~~~~~~~l~~l~~-~~~~~~L~~L~L-~~~~~~~i~~~~~~~l~~L~~L~L~~n~l 353 (833)
|+++.++++.+... +.+..+.. .+-...|+.+.+ +...+.+-....+..+++|+.+++-+++-
T Consensus 374 lr~lslshce~itD--~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~ 438 (483)
T KOG4341|consen 374 LRVLSLSHCELITD--EGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQD 438 (483)
T ss_pred hccCChhhhhhhhh--hhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhh
Confidence 88888887754322 12222221 111226777777 44444444445677788888888877753
No 69
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=95.78 E-value=0.0016 Score=73.86 Aligned_cols=112 Identities=23% Similarity=0.260 Sum_probs=57.3
Q ss_pred CCCCCEEeCCCCC-CCCCCccccccCCCCCCEEEccCC-CCCCCCC----cccCCccccceecccCcc-CCCCCCccccc
Q 048006 86 LHDLRHLNLSFND-FSGSPIPEFIGSLSKLRYLDLFGT-VFAGPIP----PQLGNLSRLQHLDLGSNY-LFSTGNLDWLS 158 (833)
Q Consensus 86 l~~L~~L~Ls~n~-~~~~~~p~~~~~l~~L~~L~Ls~n-~l~~~~p----~~~~~l~~L~~L~Ls~n~-~~~~~~~~~l~ 158 (833)
.+.|+.|.+.++. +....+-.....+++|+.|+++++ ......+ .....+++|+.|+++.+. ++. .....++
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd-~~l~~l~ 265 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTD-IGLSALA 265 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCc-hhHHHHH
Confidence 5666666666552 332112234456677777777652 1111111 223445666777777666 322 2222222
Q ss_pred -CCCCCcEEecCCCC-CCCCchhHHhhcCCCCCCEEEccCCCC
Q 048006 159 -HLSYLRYLNLDESN-LANSSDWFQVIGKLHSLKTLSLHSCYL 199 (833)
Q Consensus 159 -~l~~L~~L~Ls~n~-~~~~~~~~~~l~~l~~L~~L~Ls~n~l 199 (833)
.+++|++|.+.++. +++. .+......+++|++|++++|..
T Consensus 266 ~~c~~L~~L~l~~c~~lt~~-gl~~i~~~~~~L~~L~l~~c~~ 307 (482)
T KOG1947|consen 266 SRCPNLETLSLSNCSNLTDE-GLVSIAERCPSLRELDLSGCHG 307 (482)
T ss_pred hhCCCcceEccCCCCccchh-HHHHHHHhcCcccEEeeecCcc
Confidence 36667776665555 3332 3444455566667776666654
No 70
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.29 E-value=0.00071 Score=65.72 Aligned_cols=83 Identities=22% Similarity=0.266 Sum_probs=42.8
Q ss_pred CCCCCEEEccCCCCCCCCCcccCCccccceecccCccCCCCCCcccccCCCCCcEEecCCCCCCCCchhHHhhcCCCCCC
Q 048006 111 LSKLRYLDLFGTVFAGPIPPQLGNLSRLQHLDLGSNYLFSTGNLDWLSHLSYLRYLNLDESNLANSSDWFQVIGKLHSLK 190 (833)
Q Consensus 111 l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~l~~l~~L~ 190 (833)
+.+.+.|+.-++.+.+. ....+++.|++|.||-|.| .....+..|++|++|+|..|.|.++.++ .-+.++++|+
T Consensus 18 l~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkI---ssL~pl~rCtrLkElYLRkN~I~sldEL-~YLknlpsLr 91 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKI---SSLAPLQRCTRLKELYLRKNCIESLDEL-EYLKNLPSLR 91 (388)
T ss_pred HHHhhhhcccCCCccHH--HHHHhcccceeEEeecccc---ccchhHHHHHHHHHHHHHhcccccHHHH-HHHhcCchhh
Confidence 34455566666655431 1124556666666666665 2334455566666666666666554333 2344455555
Q ss_pred EEEccCCCC
Q 048006 191 TLSLHSCYL 199 (833)
Q Consensus 191 ~L~Ls~n~l 199 (833)
.|.|..|.-
T Consensus 92 ~LWL~ENPC 100 (388)
T KOG2123|consen 92 TLWLDENPC 100 (388)
T ss_pred hHhhccCCc
Confidence 555544433
No 71
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.21 E-value=0.0072 Score=34.79 Aligned_cols=11 Identities=55% Similarity=0.567 Sum_probs=4.6
Q ss_pred cEEECCCcccc
Q 048006 689 VALNLSKNHLT 699 (833)
Q Consensus 689 ~~L~Ls~N~l~ 699 (833)
++|||++|+++
T Consensus 3 ~~Ldls~n~l~ 13 (22)
T PF00560_consen 3 EYLDLSGNNLT 13 (22)
T ss_dssp SEEEETSSEES
T ss_pred cEEECCCCcCE
Confidence 34444444444
No 72
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.16 E-value=0.007 Score=34.86 Aligned_cols=21 Identities=57% Similarity=0.895 Sum_probs=13.7
Q ss_pred CCCEEeCCCCcCcccCCccccC
Q 048006 711 SLDFLDLSRNQLVGGIPSSLSQ 732 (833)
Q Consensus 711 ~L~~L~Ls~N~l~~~~p~~l~~ 732 (833)
+|++|||++|+++ .+|..|++
T Consensus 1 ~L~~Ldls~n~l~-~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLT-SIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEES-EEGTTTTT
T ss_pred CccEEECCCCcCE-eCChhhcC
Confidence 4677777777777 56655554
No 73
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=94.74 E-value=0.0039 Score=70.60 Aligned_cols=116 Identities=24% Similarity=0.196 Sum_probs=80.0
Q ss_pred ccccCCCCCCEEeCCCC-CC-CCC--CccccccCCCCCCEEEccCCC-CCCCCCcccC-CccccceecccCcc-CCCCCC
Q 048006 81 PALLKLHDLRHLNLSFN-DF-SGS--PIPEFIGSLSKLRYLDLFGTV-FAGPIPPQLG-NLSRLQHLDLGSNY-LFSTGN 153 (833)
Q Consensus 81 ~~l~~l~~L~~L~Ls~n-~~-~~~--~~p~~~~~l~~L~~L~Ls~n~-l~~~~p~~~~-~l~~L~~L~Ls~n~-~~~~~~ 153 (833)
+.....++|+.|+++++ .. ... ........+++|+.|+++++. +++..-..+. .+++|++|.+.+|. ++..+.
T Consensus 208 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl 287 (482)
T KOG1947|consen 208 ALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGL 287 (482)
T ss_pred HHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHH
Confidence 45677899999999973 21 111 112344567999999999998 5543333333 38899999988887 555444
Q ss_pred cccccCCCCCcEEecCCCCCCCCchhHHhhcCCCCCCEEEccC
Q 048006 154 LDWLSHLSYLRYLNLDESNLANSSDWFQVIGKLHSLKTLSLHS 196 (833)
Q Consensus 154 ~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~l~~l~~L~~L~Ls~ 196 (833)
......++.|++|+++++.......+.....++++|+.|.+..
T Consensus 288 ~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~ 330 (482)
T KOG1947|consen 288 VSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLS 330 (482)
T ss_pred HHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhh
Confidence 4556789999999999988764444555566688888766543
No 74
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=93.81 E-value=0.0019 Score=61.22 Aligned_cols=88 Identities=13% Similarity=0.060 Sum_probs=60.1
Q ss_pred cccCCCCCCEEeCCCCCCCCCCccccccCCCCCCEEEccCCCCCCCCCcccCCccccceecccCccCCCCCCcccccCCC
Q 048006 82 ALLKLHDLRHLNLSFNDFSGSPIPEFIGSLSKLRYLDLFGTVFAGPIPPQLGNLSRLQHLDLGSNYLFSTGNLDWLSHLS 161 (833)
Q Consensus 82 ~l~~l~~L~~L~Ls~n~~~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~ 161 (833)
.+..+...++||++.|++. .+...|..++.|..||++.|.+. .+|..++.+..++++++..|... ..|..++..+
T Consensus 37 ei~~~kr~tvld~~s~r~v--n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~--~~p~s~~k~~ 111 (326)
T KOG0473|consen 37 EIASFKRVTVLDLSSNRLV--NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS--QQPKSQKKEP 111 (326)
T ss_pred hhhccceeeeehhhhhHHH--hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh--hCCccccccC
Confidence 4566667777777777765 35556667777777777777766 57777777777777777777664 3445566666
Q ss_pred CCcEEecCCCCCC
Q 048006 162 YLRYLNLDESNLA 174 (833)
Q Consensus 162 ~L~~L~Ls~n~~~ 174 (833)
.++++++.++.+.
T Consensus 112 ~~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 112 HPKKNEQKKTEFF 124 (326)
T ss_pred CcchhhhccCcch
Confidence 6666666666543
No 75
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=93.24 E-value=0.00067 Score=74.57 Aligned_cols=109 Identities=27% Similarity=0.277 Sum_probs=55.9
Q ss_pred CCcEEEccCCcccccC----CCCccCcCCccEEEcccCcCccccC----ccccCC-CCCcEeccCCCccCCCC----Ccc
Q 048006 510 SLVILNLENNSFSGRI----PDSMGFLQNIQTLSLHNNRLTGELS----SSFRNC-SQLRLLDLGKNALYGEI----PTW 576 (833)
Q Consensus 510 ~L~~L~Ls~N~l~~~~----~~~~~~l~~L~~L~L~~n~l~~~~~----~~~~~l-~~L~~L~L~~n~l~~~~----p~~ 576 (833)
.+..+.|.+|.+.... -..+...+.|+.|++++|.+.+..- ..+... ..+++|++..|.+++.- ...
T Consensus 88 ~l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~ 167 (478)
T KOG4308|consen 88 SLLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAV 167 (478)
T ss_pred hHHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHH
Confidence 3677777777776432 2234556677777777777763211 122222 44566666666665322 222
Q ss_pred hhhcCCccceEEecCCcccc----ccccccc----CCCCCCEEeccCCcCc
Q 048006 577 MGESLSNLIVLSLKSNKFHG----KIPFQLC----QLAFLQVLDLSLNNIS 619 (833)
Q Consensus 577 ~~~~l~~L~~L~L~~N~l~~----~~~~~l~----~l~~L~~L~Ls~N~l~ 619 (833)
+.. ...++.++++.|.+.. .++..+. ...++++|.+++|.++
T Consensus 168 L~~-~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t 217 (478)
T KOG4308|consen 168 LEK-NEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVT 217 (478)
T ss_pred Hhc-ccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcC
Confidence 332 4556666666665530 1122222 3445555666655554
No 76
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=92.69 E-value=0.0046 Score=58.63 Aligned_cols=83 Identities=22% Similarity=0.173 Sum_probs=71.4
Q ss_pred CcccEEEccCCcCCCCCchhhhcccCCcEEECCCccccccCCcccCCCCCCCEEeCCCCcCcccCCccccCCCCCCEEEC
Q 048006 662 GLVKSLELSNNNLNGAVPEEIMDLVGLVALNLSKNHLTGQISPKIGQLKSLDFLDLSRNQLVGGIPSSLSQLSGLSVMDL 741 (833)
Q Consensus 662 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l 741 (833)
...+.||++.|++. ..-..|.-++.|..||++.|.+. ..|..+++...+..+++..|..+ ..|.++...+.+++++.
T Consensus 42 kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e~ 118 (326)
T KOG0473|consen 42 KRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNEQ 118 (326)
T ss_pred ceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhhh
Confidence 34478999999986 45556777888999999999998 78899999999999999999988 78899999999999999
Q ss_pred cCCcCc
Q 048006 742 SYNNLS 747 (833)
Q Consensus 742 s~N~l~ 747 (833)
..|++.
T Consensus 119 k~~~~~ 124 (326)
T KOG0473|consen 119 KKTEFF 124 (326)
T ss_pred ccCcch
Confidence 999875
No 77
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=92.50 E-value=0.0012 Score=72.69 Aligned_cols=89 Identities=29% Similarity=0.258 Sum_probs=43.3
Q ss_pred cCCccEEEcccCcCccc----cCccccCCCC-CcEeccCCCccCCCCCcchhh---cC-CccceEEecCCcccccc----
Q 048006 532 LQNIQTLSLHNNRLTGE----LSSSFRNCSQ-LRLLDLGKNALYGEIPTWMGE---SL-SNLIVLSLKSNKFHGKI---- 598 (833)
Q Consensus 532 l~~L~~L~L~~n~l~~~----~~~~~~~l~~-L~~L~L~~n~l~~~~p~~~~~---~l-~~L~~L~L~~N~l~~~~---- 598 (833)
..++++|.+++|.++.. ....+...++ +..+++..|++.+..-..+.. .+ ..+++++++.|+++..-
T Consensus 203 ~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L 282 (478)
T KOG4308|consen 203 LSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDL 282 (478)
T ss_pred cccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHH
Confidence 44555555655555411 1122333333 555666666654221111111 12 34566666666665332
Q ss_pred cccccCCCCCCEEeccCCcCcc
Q 048006 599 PFQLCQLAFLQVLDLSLNNISG 620 (833)
Q Consensus 599 ~~~l~~l~~L~~L~Ls~N~l~~ 620 (833)
...+..++.++++.+++|.+..
T Consensus 283 ~~~l~~~~~l~~l~l~~n~l~~ 304 (478)
T KOG4308|consen 283 AEVLVSCRQLEELSLSNNPLTD 304 (478)
T ss_pred HHHHhhhHHHHHhhcccCcccc
Confidence 3334455667777777776643
No 78
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=89.53 E-value=0.19 Score=26.72 Aligned_cols=9 Identities=56% Similarity=0.759 Sum_probs=3.0
Q ss_pred cEeccCCCc
Q 048006 560 RLLDLGKNA 568 (833)
Q Consensus 560 ~~L~L~~n~ 568 (833)
+.|++++|+
T Consensus 4 ~~L~l~~n~ 12 (17)
T PF13504_consen 4 RTLDLSNNR 12 (17)
T ss_dssp SEEEETSS-
T ss_pred CEEECCCCC
Confidence 333333333
No 79
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=87.94 E-value=0.41 Score=28.74 Aligned_cols=14 Identities=57% Similarity=0.591 Sum_probs=7.3
Q ss_pred CCCCEEeCCCCcCc
Q 048006 710 KSLDFLDLSRNQLV 723 (833)
Q Consensus 710 ~~L~~L~Ls~N~l~ 723 (833)
++|+.|+|++|+|.
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00369 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 34555555555555
No 80
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=87.94 E-value=0.41 Score=28.74 Aligned_cols=14 Identities=57% Similarity=0.591 Sum_probs=7.3
Q ss_pred CCCCEEeCCCCcCc
Q 048006 710 KSLDFLDLSRNQLV 723 (833)
Q Consensus 710 ~~L~~L~Ls~N~l~ 723 (833)
++|+.|+|++|+|.
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00370 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 34555555555555
No 81
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=87.67 E-value=0.41 Score=28.73 Aligned_cols=21 Identities=38% Similarity=0.436 Sum_probs=13.1
Q ss_pred CCCcEeccCCCccCCCCCcchh
Q 048006 557 SQLRLLDLGKNALYGEIPTWMG 578 (833)
Q Consensus 557 ~~L~~L~L~~n~l~~~~p~~~~ 578 (833)
++|++|+|++|++. .+|...+
T Consensus 2 ~~L~~L~L~~N~l~-~lp~~~f 22 (26)
T smart00369 2 PNLRELDLSNNQLS-SLPPGAF 22 (26)
T ss_pred CCCCEEECCCCcCC-cCCHHHc
Confidence 45666666666666 6665544
No 82
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=87.67 E-value=0.41 Score=28.73 Aligned_cols=21 Identities=38% Similarity=0.436 Sum_probs=13.1
Q ss_pred CCCcEeccCCCccCCCCCcchh
Q 048006 557 SQLRLLDLGKNALYGEIPTWMG 578 (833)
Q Consensus 557 ~~L~~L~L~~n~l~~~~p~~~~ 578 (833)
++|++|+|++|++. .+|...+
T Consensus 2 ~~L~~L~L~~N~l~-~lp~~~f 22 (26)
T smart00370 2 PNLRELDLSNNQLS-SLPPGAF 22 (26)
T ss_pred CCCCEEECCCCcCC-cCCHHHc
Confidence 45666666666666 6665544
No 83
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=83.69 E-value=0.64 Score=27.25 Aligned_cols=19 Identities=37% Similarity=0.459 Sum_probs=8.7
Q ss_pred CCCcEEEccCCCCCchhhH
Q 048006 287 CSLITLNLSNNKLSGQLSE 305 (833)
Q Consensus 287 ~~L~~L~Ls~n~l~~~~~~ 305 (833)
++|++|+|++|++++....
T Consensus 2 ~~L~~L~l~~n~i~~~g~~ 20 (24)
T PF13516_consen 2 PNLETLDLSNNQITDEGAS 20 (24)
T ss_dssp TT-SEEE-TSSBEHHHHHH
T ss_pred CCCCEEEccCCcCCHHHHH
Confidence 4555555555555544433
No 84
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=78.82 E-value=1.4 Score=57.37 Aligned_cols=72 Identities=19% Similarity=0.141 Sum_probs=44.5
Q ss_pred eCCCCcCcccCCccccCCCCCCEEECcCCcCccCCCCccccCccccccccCCCCCCCCCCCCCCCCCCCCCCCCCcc
Q 048006 716 DLSRNQLVGGIPSSLSQLSGLSVMDLSYNNLSGKIPTVTQLQSFNDTVYAGNPELCGLPLPNKCRDEESAAGPGITE 792 (833)
Q Consensus 716 ~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~l~~~~~~gn~~lc~~~~~~~c~~~~~~~~~~~~~ 792 (833)
||++|+|+...+..|..+++|+.|+|++|++.|.+.-.....++......- .......|..|...++.+..+
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~CDC~L~WL~~WL~~~~v~v-----~~~~~i~CasP~~LrG~~L~~ 72 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFECDCGLARLPRWAEEKGVKV-----RQPEAALCAGPGALAGQPLLG 72 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccccccccHHHHHHHHhcCccc-----cCCcccCCCCChHHCCCCccc
Confidence 688888887777788888899999999888888776543333332211100 001123577666666655543
No 85
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=78.20 E-value=9.9 Score=40.89 Aligned_cols=60 Identities=17% Similarity=0.222 Sum_probs=27.6
Q ss_pred ccEEEcCCCcCcCCCCCc---ccCCCCCcEEEccCCcccc----cCCCCccCcCCccEEEcccCcCc
Q 048006 487 LTYVDLSSNLLSGKLPDC---WWTFDSLVILNLENNSFSG----RIPDSMGFLQNIQTLSLHNNRLT 546 (833)
Q Consensus 487 L~~L~ls~n~l~~~~~~~---~~~l~~L~~L~Ls~N~l~~----~~~~~~~~l~~L~~L~L~~n~l~ 546 (833)
+..+.++.|.+....... ...-+.+..|++++|.... .+|........++....+.|...
T Consensus 415 l~el~ls~~~lka~l~s~in~l~stqtl~kldisgn~mgd~gap~lpkalq~n~rlr~ipds~n~p~ 481 (553)
T KOG4242|consen 415 LAELSLSPGPLKAGLESAINKLLSTQTLAKLDISGNGMGDGGAPPLPKALQSNCRLRPIPDSLNLPE 481 (553)
T ss_pred ccCcccCCCcccccHHHHHHhhccCcccccccccCCCcccCCCCcCccccCCCCccCCCCCCCCCcc
Confidence 445555555544222111 2223456666666665442 23333444445555555555443
No 86
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=76.21 E-value=0.4 Score=45.18 Aligned_cols=81 Identities=17% Similarity=0.168 Sum_probs=34.2
Q ss_pred ccEEEcccCcCccccCccccCCCCCcEeccCCCccCCCC-CcchhhcCCccceEEecCC-cccccccccccCCCCCCEEe
Q 048006 535 IQTLSLHNNRLTGELSSSFRNCSQLRLLDLGKNALYGEI-PTWMGESLSNLIVLSLKSN-KFHGKIPFQLCQLAFLQVLD 612 (833)
Q Consensus 535 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-p~~~~~~l~~L~~L~L~~N-~l~~~~~~~l~~l~~L~~L~ 612 (833)
++.++-++..|..+--+.+.+++.++.|.+.+|+-.+.. -+.+....++|+.|++++| .|+..--..+..+++|+.|.
T Consensus 103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~ 182 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLH 182 (221)
T ss_pred EEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHH
Confidence 344444444444333333444444444544444321100 0011112355666666655 34433233444555555555
Q ss_pred ccC
Q 048006 613 LSL 615 (833)
Q Consensus 613 Ls~ 615 (833)
+.+
T Consensus 183 l~~ 185 (221)
T KOG3864|consen 183 LYD 185 (221)
T ss_pred hcC
Confidence 543
No 87
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=71.09 E-value=3.4 Score=24.86 Aligned_cols=15 Identities=20% Similarity=0.426 Sum_probs=7.7
Q ss_pred CCCcEEecCCCCCCC
Q 048006 161 SYLRYLNLDESNLAN 175 (833)
Q Consensus 161 ~~L~~L~Ls~n~~~~ 175 (833)
++|++|++++|.|+.
T Consensus 2 ~~L~~L~L~~NkI~~ 16 (26)
T smart00365 2 TNLEELDLSQNKIKK 16 (26)
T ss_pred CccCEEECCCCccce
Confidence 345555555555544
No 88
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=64.93 E-value=4.6 Score=24.22 Aligned_cols=13 Identities=54% Similarity=0.611 Sum_probs=6.1
Q ss_pred CCCEEeCCCCcCc
Q 048006 711 SLDFLDLSRNQLV 723 (833)
Q Consensus 711 ~L~~L~Ls~N~l~ 723 (833)
+|+.|++++|+++
T Consensus 3 ~L~~L~vs~N~Lt 15 (26)
T smart00364 3 SLKELNVSNNQLT 15 (26)
T ss_pred ccceeecCCCccc
Confidence 3444444444444
No 89
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=63.83 E-value=51 Score=35.77 Aligned_cols=38 Identities=21% Similarity=0.322 Sum_probs=21.2
Q ss_pred CCCCCEEECcCCccccccCCCccCCccccEEEccCccCCC
Q 048006 340 ISNLKELHLANNPLVLKLSHDWVPPFQLIIISLSSCKIGP 379 (833)
Q Consensus 340 l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~~~l~~ 379 (833)
-+.+++++++.|++....+..+.....= +.++.|+++.
T Consensus 164 npr~r~~dls~npi~dkvpihl~~p~~p--l~lr~c~lss 201 (553)
T KOG4242|consen 164 NPRARQHDLSPNPIGDKVPIHLPQPGNP--LSLRVCELSS 201 (553)
T ss_pred cchhhhhccCCCcccccCCccccCCCCc--cchhhhhhhh
Confidence 3566777888887776665554332111 4455555543
No 90
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=62.11 E-value=2.2 Score=40.40 Aligned_cols=33 Identities=12% Similarity=0.085 Sum_probs=15.3
Q ss_pred CcEEEccCccccccccccccCCCCCcEEECcCC
Q 048006 241 FISIDLGFNQLQGSIPESFQHMVYLEHLRLSFN 273 (833)
Q Consensus 241 L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n 273 (833)
++.+|-++..|...--+-+..++.++.|.+.+|
T Consensus 103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~c 135 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANC 135 (221)
T ss_pred EEEEecCCchHHHHHHHHHhccchhhhheeccc
Confidence 445555555554443334444444444444444
No 91
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=51.29 E-value=16 Score=22.30 Aligned_cols=15 Identities=60% Similarity=0.629 Sum_probs=9.4
Q ss_pred CCCcEEEccCCCCCc
Q 048006 287 CSLITLNLSNNKLSG 301 (833)
Q Consensus 287 ~~L~~L~Ls~n~l~~ 301 (833)
++|++|+|++|.+..
T Consensus 2 ~~L~~LdL~~N~i~~ 16 (28)
T smart00368 2 PSLRELDLSNNKLGD 16 (28)
T ss_pred CccCEEECCCCCCCH
Confidence 356666777666653
No 92
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=45.84 E-value=9.8 Score=50.28 Aligned_cols=37 Identities=27% Similarity=0.403 Sum_probs=27.9
Q ss_pred ECcCCcCccCCCCc-cccCccccccccCCCCCCCCCCC
Q 048006 740 DLSYNNLSGKIPTV-TQLQSFNDTVYAGNPELCGLPLP 776 (833)
Q Consensus 740 ~ls~N~l~g~ip~~-~~~~~l~~~~~~gn~~lc~~~~~ 776 (833)
||++|+|+...+.. ..+..+..+.+.||||.|+|.+.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~CDC~L~ 38 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFECDCGLA 38 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccccccccH
Confidence 68999999544432 34556778889999999999863
No 93
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=44.49 E-value=11 Score=41.57 Aligned_cols=12 Identities=42% Similarity=0.346 Sum_probs=6.1
Q ss_pred CcEeccCCCccC
Q 048006 559 LRLLDLGKNALY 570 (833)
Q Consensus 559 L~~L~L~~n~l~ 570 (833)
|++|-+.+|++.
T Consensus 272 Leel~l~GNPlc 283 (585)
T KOG3763|consen 272 LEELVLEGNPLC 283 (585)
T ss_pred HHHeeecCCccc
Confidence 445555555544
No 94
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=39.62 E-value=19 Score=39.68 Aligned_cols=13 Identities=23% Similarity=0.041 Sum_probs=7.6
Q ss_pred CcEEEccCccccc
Q 048006 241 FISIDLGFNQLQG 253 (833)
Q Consensus 241 L~~L~Ls~n~l~~ 253 (833)
|++|-+.+|.+..
T Consensus 272 Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 272 LEELVLEGNPLCT 284 (585)
T ss_pred HHHeeecCCcccc
Confidence 5566666666543
No 95
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=28.53 E-value=40 Score=19.98 Aligned_cols=12 Identities=33% Similarity=0.457 Sum_probs=6.3
Q ss_pred cccceecccCcc
Q 048006 136 SRLQHLDLGSNY 147 (833)
Q Consensus 136 ~~L~~L~Ls~n~ 147 (833)
++|++|+|++|.
T Consensus 2 ~~L~~L~l~~C~ 13 (26)
T smart00367 2 PNLRELDLSGCT 13 (26)
T ss_pred CCCCEeCCCCCC
Confidence 445555555554
No 96
>PRK14762 membrane protein; Provisional
Probab=20.58 E-value=67 Score=18.84 Aligned_cols=18 Identities=22% Similarity=0.527 Sum_probs=11.8
Q ss_pred eehhhHHHHHHHhhhhhh
Q 048006 812 YVSLILGFIVGFWGVCGT 829 (833)
Q Consensus 812 ~~~~~~~~~~~~~~~~~~ 829 (833)
.+.+++.|++|+.++.++
T Consensus 5 lw~i~iifligllvvtgv 22 (27)
T PRK14762 5 LWAVLIIFLIGLLVVTGV 22 (27)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 345567777787776654
Done!