Query 048006
Match_columns 833
No_of_seqs 874 out of 4963
Neff 10.1
Searched_HMMs 29240
Date Mon Mar 25 08:58:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048006.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/048006hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 3.4E-92 1.2E-96 838.5 47.9 723 6-791 4-760 (768)
2 3rgz_A Protein brassinosteroid 100.0 2.8E-71 9.5E-76 658.8 45.5 663 45-769 30-716 (768)
3 1ziw_A TOLL-like receptor 3; i 100.0 1.4E-61 4.9E-66 571.1 48.9 628 79-793 19-665 (680)
4 1ziw_A TOLL-like receptor 3; i 100.0 2E-59 6.8E-64 552.8 51.8 597 90-775 7-627 (680)
5 3t6q_A CD180 antigen; protein- 100.0 8.1E-57 2.8E-61 523.3 39.1 571 62-791 16-599 (606)
6 3j0a_A TOLL-like receptor 5; m 100.0 2.5E-56 8.7E-61 535.8 38.7 560 85-795 22-604 (844)
7 4eco_A Uncharacterized protein 100.0 1.5E-56 5.1E-61 519.8 26.2 511 11-749 27-602 (636)
8 3vq2_A TLR4, TOLL-like recepto 100.0 2.1E-54 7.2E-59 503.0 40.1 570 62-791 15-597 (606)
9 3t6q_A CD180 antigen; protein- 100.0 7.9E-54 2.7E-58 498.2 38.1 538 90-774 15-564 (606)
10 3vq2_A TLR4, TOLL-like recepto 100.0 1.7E-52 5.9E-57 486.9 36.1 534 138-775 13-563 (606)
11 3j0a_A TOLL-like receptor 5; m 100.0 2.9E-52 1E-56 500.6 38.5 542 90-776 7-566 (844)
12 4ecn_A Leucine-rich repeat pro 100.0 2E-52 6.8E-57 491.4 29.0 547 8-774 263-870 (876)
13 2z63_A TOLL-like receptor 4, v 100.0 8.5E-49 2.9E-53 452.8 35.9 502 87-756 28-540 (570)
14 2z81_A CD282 antigen, TOLL-lik 100.0 1.5E-48 5.3E-53 448.2 30.0 510 45-755 3-518 (549)
15 4g8a_A TOLL-like receptor 4; l 100.0 1.6E-46 5.3E-51 440.2 39.5 567 79-793 46-621 (635)
16 2z63_A TOLL-like receptor 4, v 100.0 3.4E-46 1.2E-50 431.0 37.0 515 164-775 10-536 (570)
17 2z81_A CD282 antigen, TOLL-lik 100.0 1.8E-46 6.3E-51 430.9 25.4 463 241-774 28-514 (549)
18 2z7x_B TOLL-like receptor 1, v 100.0 5.7E-46 2E-50 423.4 22.8 456 217-753 3-487 (520)
19 2z7x_B TOLL-like receptor 1, v 100.0 1.7E-44 5.7E-49 411.3 28.7 461 62-727 4-485 (520)
20 4eco_A Uncharacterized protein 100.0 3.5E-45 1.2E-49 424.4 23.0 446 241-771 83-601 (636)
21 4g8a_A TOLL-like receptor 4; l 100.0 2.1E-43 7E-48 413.7 34.4 512 214-775 52-585 (635)
22 4ecn_A Leucine-rich repeat pro 100.0 3.3E-44 1.1E-48 421.8 26.1 378 273-771 435-841 (876)
23 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 1.5E-42 5.3E-47 398.3 23.0 462 214-755 31-518 (562)
24 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 1.5E-41 5.1E-46 390.1 29.8 464 61-727 34-514 (562)
25 1jl5_A Outer protein YOPM; leu 100.0 1.4E-40 4.6E-45 368.6 21.5 266 81-427 5-270 (454)
26 3v47_A TOLL-like receptor 5B a 100.0 4.2E-39 1.4E-43 360.5 30.9 389 217-756 13-417 (455)
27 1ogq_A PGIP-2, polygalacturona 100.0 6.8E-41 2.3E-45 353.5 15.1 294 9-353 1-303 (313)
28 3v47_A TOLL-like receptor 5B a 100.0 1.2E-37 4.2E-42 348.6 33.6 367 214-623 30-412 (455)
29 1jl5_A Outer protein YOPM; leu 100.0 2.1E-38 7.3E-43 351.0 24.5 388 214-752 11-416 (454)
30 3bz5_A Internalin-J, INLJ; leu 100.0 1.3E-36 4.4E-41 337.0 31.3 373 80-590 35-407 (457)
31 2id5_A Lingo-1, leucine rich r 100.0 6.1E-36 2.1E-40 336.6 23.6 257 485-774 104-360 (477)
32 3bz5_A Internalin-J, INLJ; leu 100.0 1.7E-35 5.7E-40 328.1 25.1 182 485-753 212-393 (457)
33 1o6v_A Internalin A; bacterial 100.0 2.2E-34 7.5E-39 322.2 31.3 214 485-749 177-390 (466)
34 1ogq_A PGIP-2, polygalacturona 100.0 9.6E-36 3.3E-40 314.1 18.7 259 485-779 50-312 (313)
35 1o6v_A Internalin A; bacterial 100.0 4.9E-34 1.7E-38 319.4 33.7 119 214-349 46-164 (466)
36 2id5_A Lingo-1, leucine rich r 100.0 8E-34 2.7E-38 319.3 27.7 258 484-774 79-337 (477)
37 3o6n_A APL1; leucine-rich repe 100.0 1.5E-33 5.2E-38 308.1 25.0 333 318-774 46-378 (390)
38 3oja_B Anopheles plasmodium-re 100.0 4.8E-33 1.6E-37 320.9 25.0 333 318-774 52-384 (597)
39 4fcg_A Uncharacterized protein 100.0 2.3E-33 8E-38 297.5 15.6 275 7-299 20-313 (328)
40 3o6n_A APL1; leucine-rich repe 100.0 7.3E-32 2.5E-36 294.8 25.4 307 241-620 47-353 (390)
41 4fmz_A Internalin; leucine ric 100.0 4.1E-31 1.4E-35 284.2 29.7 307 83-427 40-346 (347)
42 4fmz_A Internalin; leucine ric 100.0 5.7E-31 2E-35 283.0 27.8 215 485-747 132-346 (347)
43 3oja_B Anopheles plasmodium-re 100.0 3.6E-31 1.2E-35 305.2 25.4 310 214-621 51-360 (597)
44 2ft3_A Biglycan; proteoglycan, 100.0 3.9E-30 1.3E-34 274.3 25.4 220 485-745 102-331 (332)
45 1z7x_W Ribonuclease inhibitor; 100.0 4.6E-33 1.6E-37 312.1 -2.0 125 241-411 5-135 (461)
46 1xku_A Decorin; proteoglycan, 100.0 1.5E-29 5.1E-34 269.7 25.3 221 485-745 100-330 (330)
47 1z7x_W Ribonuclease inhibitor; 100.0 4.2E-33 1.4E-37 312.4 -3.9 86 485-570 313-411 (461)
48 2ft3_A Biglycan; proteoglycan, 100.0 2.2E-29 7.6E-34 268.5 22.5 270 87-400 54-331 (332)
49 1xku_A Decorin; proteoglycan, 100.0 8E-29 2.7E-33 264.0 25.9 287 60-399 33-329 (330)
50 3zyj_A Leucine-rich repeat-con 100.0 5.2E-28 1.8E-32 268.4 23.9 253 462-753 45-298 (440)
51 2z66_A Variable lymphocyte rec 100.0 1.5E-28 5.1E-33 259.0 17.5 236 485-753 28-267 (306)
52 3ogk_B Coronatine-insensitive 100.0 6.2E-31 2.1E-35 304.7 -1.0 337 43-422 39-411 (592)
53 3zyi_A Leucine-rich repeat-con 100.0 9.2E-28 3.1E-32 267.4 23.1 234 485-753 75-309 (452)
54 3zyi_A Leucine-rich repeat-con 100.0 1.5E-27 5E-32 265.7 24.0 252 486-775 55-308 (452)
55 4fcg_A Uncharacterized protein 100.0 6E-28 2.1E-32 255.9 19.2 227 484-747 80-314 (328)
56 1ozn_A Reticulon 4 receptor; N 100.0 6.4E-28 2.2E-32 251.2 18.9 248 487-771 13-262 (285)
57 2z80_A TOLL-like receptor 2, v 100.0 2.1E-28 7.1E-33 263.3 14.7 275 444-753 36-320 (353)
58 2z80_A TOLL-like receptor 2, v 100.0 3.9E-28 1.3E-32 261.2 16.0 274 463-774 34-318 (353)
59 2z66_A Variable lymphocyte rec 100.0 8.9E-28 3E-32 253.0 18.4 251 487-774 9-265 (306)
60 3zyj_A Leucine-rich repeat-con 99.9 5.4E-27 1.9E-31 260.2 23.4 251 486-774 44-296 (440)
61 3ogk_B Coronatine-insensitive 99.9 8.7E-29 3E-33 286.6 6.6 351 213-619 111-501 (592)
62 1ozn_A Reticulon 4 receptor; N 99.9 4.1E-27 1.4E-31 245.1 15.6 235 485-753 32-267 (285)
63 1wwl_A Monocyte differentiatio 99.9 8.5E-28 2.9E-32 253.4 5.0 203 507-748 93-310 (312)
64 3g06_A SSPH2 (leucine-rich rep 99.9 1.1E-25 3.7E-30 256.3 21.3 293 31-413 10-308 (622)
65 3oja_A Leucine-rich immune mol 99.9 1.2E-26 4.1E-31 259.5 10.4 244 484-774 33-286 (487)
66 1wwl_A Monocyte differentiatio 99.9 4.6E-27 1.6E-31 247.8 5.7 245 484-770 42-309 (312)
67 3o53_A Protein LRIM1, AGAP0063 99.9 5.4E-27 1.9E-31 247.8 6.3 221 485-752 58-281 (317)
68 2z62_A TOLL-like receptor 4, v 99.9 6.9E-25 2.4E-29 227.1 22.0 229 489-754 11-244 (276)
69 3o53_A Protein LRIM1, AGAP0063 99.9 5.7E-26 2E-30 240.0 10.8 242 462-751 12-255 (317)
70 3g06_A SSPH2 (leucine-rich rep 99.9 5.2E-24 1.8E-28 242.6 26.9 262 416-753 42-303 (622)
71 3oja_A Leucine-rich immune mol 99.9 2.3E-25 7.8E-30 249.1 13.7 222 506-773 31-253 (487)
72 2o6q_A Variable lymphocyte rec 99.9 6.8E-24 2.3E-28 218.6 22.2 186 534-752 38-223 (270)
73 2p1m_B Transport inhibitor res 99.9 2.4E-27 8.3E-32 274.7 -5.0 111 505-616 428-541 (594)
74 2p1m_B Transport inhibitor res 99.9 7.1E-27 2.4E-31 270.8 -2.2 31 116-147 47-77 (594)
75 2z62_A TOLL-like receptor 4, v 99.9 5.3E-24 1.8E-28 220.4 19.0 225 513-774 11-241 (276)
76 1p9a_G Platelet glycoprotein I 99.9 2.2E-23 7.5E-28 216.5 20.0 207 505-751 6-212 (290)
77 1p9a_G Platelet glycoprotein I 99.9 2.8E-23 9.5E-28 215.7 19.7 207 529-774 6-212 (290)
78 2o6q_A Variable lymphocyte rec 99.9 7.3E-23 2.5E-27 210.8 21.7 206 485-726 16-221 (270)
79 3rfs_A Internalin B, repeat mo 99.9 8.1E-24 2.8E-28 218.1 11.7 223 485-753 19-241 (272)
80 3rfs_A Internalin B, repeat mo 99.9 3.7E-23 1.3E-27 213.2 15.2 224 464-734 23-246 (272)
81 3goz_A Leucine-rich repeat-con 99.9 6.9E-24 2.4E-28 228.5 5.1 258 465-751 3-301 (362)
82 3m19_A Variable lymphocyte rec 99.9 4.7E-22 1.6E-26 202.3 17.7 211 535-782 16-232 (251)
83 2xwt_C Thyrotropin receptor; s 99.9 5.4E-22 1.8E-26 200.4 15.9 196 510-744 32-236 (239)
84 2ca6_A RAN GTPase-activating p 99.9 3.6E-24 1.2E-28 233.3 -0.2 236 484-751 31-320 (386)
85 4glp_A Monocyte differentiatio 99.9 6.7E-23 2.3E-27 215.8 9.5 200 510-748 92-308 (310)
86 4glp_A Monocyte differentiatio 99.9 1.6E-21 5.6E-26 205.2 17.7 224 509-770 64-307 (310)
87 2xwt_C Thyrotropin receptor; s 99.9 1.6E-21 5.6E-26 196.9 15.6 198 485-721 31-237 (239)
88 2ast_B S-phase kinase-associat 99.9 7E-23 2.4E-27 218.8 5.0 252 462-753 49-312 (336)
89 3goz_A Leucine-rich repeat-con 99.9 9.5E-23 3.3E-27 219.6 5.4 28 384-411 279-306 (362)
90 2ast_B S-phase kinase-associat 99.9 5.4E-23 1.8E-27 219.7 3.2 237 43-297 34-282 (336)
91 1h6u_A Internalin H; cell adhe 99.9 2.9E-21 9.8E-26 202.6 15.4 192 508-748 40-231 (308)
92 3m19_A Variable lymphocyte rec 99.8 1.4E-20 4.8E-25 191.4 18.4 181 485-725 14-194 (251)
93 1h6u_A Internalin H; cell adhe 99.8 1.3E-20 4.4E-25 197.6 18.3 194 83-300 37-230 (308)
94 2ca6_A RAN GTPase-activating p 99.8 1.7E-22 5.7E-27 220.1 3.9 205 79-302 24-259 (386)
95 3cvr_A Invasion plasmid antige 99.8 2.4E-20 8.2E-25 209.6 15.4 210 32-311 32-254 (571)
96 4ay9_X Follicle-stimulating ho 99.8 4.3E-20 1.5E-24 197.7 15.5 242 463-746 12-258 (350)
97 4ay9_X Follicle-stimulating ho 99.8 1.6E-19 5.4E-24 193.3 19.5 241 442-721 12-257 (350)
98 2v70_A SLIT-2, SLIT homolog 2 99.8 2.6E-20 8.9E-25 184.8 12.4 159 560-754 14-173 (220)
99 2o6s_A Variable lymphocyte rec 99.8 8.8E-20 3E-24 179.8 14.4 128 488-619 10-137 (208)
100 2v9t_B SLIT homolog 2 protein 99.8 4.5E-20 1.5E-24 183.1 12.2 189 560-792 14-202 (220)
101 2o6s_A Variable lymphocyte rec 99.8 8.8E-20 3E-24 179.8 13.2 174 512-752 10-183 (208)
102 3cvr_A Invasion plasmid antige 99.8 1.5E-19 5.2E-24 203.1 16.3 188 485-733 59-253 (571)
103 2xot_A Amphoterin-induced prot 99.8 2.5E-19 8.4E-24 192.6 12.6 180 536-751 21-206 (361)
104 3e6j_A Variable lymphocyte rec 99.8 2.2E-18 7.6E-23 172.1 15.6 158 559-753 21-178 (229)
105 2v9t_B SLIT homolog 2 protein 99.8 1.6E-18 5.6E-23 171.8 14.0 157 584-775 13-170 (220)
106 1h6t_A Internalin B; cell adhe 99.8 2.9E-18 9.9E-23 178.0 15.7 170 532-748 45-214 (291)
107 2v70_A SLIT-2, SLIT homolog 2 99.8 4.6E-18 1.6E-22 168.6 14.5 156 537-727 15-170 (220)
108 2xot_A Amphoterin-induced prot 99.8 1.4E-18 4.7E-23 186.7 10.9 177 512-724 21-203 (361)
109 1h6t_A Internalin B; cell adhe 99.7 5.4E-18 1.9E-22 175.9 14.0 173 83-301 42-214 (291)
110 1m9s_A Internalin B; cell inva 99.7 3.2E-18 1.1E-22 194.8 12.2 126 485-621 43-168 (605)
111 1w8a_A SLIT protein; signaling 99.7 4.1E-18 1.4E-22 165.0 11.1 164 585-791 11-175 (192)
112 3e6j_A Variable lymphocyte rec 99.7 1.8E-17 6E-22 165.6 15.5 156 583-774 20-176 (229)
113 1m9s_A Internalin B; cell inva 99.7 2.5E-17 8.4E-22 187.5 16.6 187 489-724 25-211 (605)
114 1dce_A Protein (RAB geranylger 99.7 5.1E-20 1.8E-24 208.3 -5.8 192 506-753 346-552 (567)
115 1xeu_A Internalin C; cellular 99.7 6.4E-18 2.2E-22 172.5 9.5 171 531-749 17-187 (263)
116 4b8c_D Glucose-repressible alc 99.7 8.3E-19 2.8E-23 205.0 2.9 262 11-300 129-404 (727)
117 4ezg_A Putative uncharacterize 99.7 1.9E-17 6.5E-22 161.3 12.0 152 556-748 43-195 (197)
118 1dce_A Protein (RAB geranylger 99.7 3.1E-20 1E-24 210.2 -9.6 202 484-741 348-567 (567)
119 4ezg_A Putative uncharacterize 99.7 4.4E-17 1.5E-21 158.7 12.2 154 530-724 41-195 (197)
120 1w8a_A SLIT protein; signaling 99.7 3.1E-17 1.1E-21 158.8 9.5 176 560-774 11-187 (192)
121 1xeu_A Internalin C; cellular 99.7 1.3E-17 4.6E-22 170.1 6.1 123 485-619 19-141 (263)
122 4b8c_D Glucose-repressible alc 99.7 1.3E-17 4.5E-22 194.8 6.8 189 516-748 208-405 (727)
123 2wfh_A SLIT homolog 2 protein 99.7 2.7E-16 9.2E-21 152.1 11.2 163 585-791 13-175 (193)
124 2wfh_A SLIT homolog 2 protein 99.7 4.1E-16 1.4E-20 150.8 12.0 112 663-775 32-144 (193)
125 3sb4_A Hypothetical leucine ri 99.6 2.7E-16 9.3E-21 166.6 10.8 100 262-374 48-157 (329)
126 3sb4_A Hypothetical leucine ri 99.6 8.5E-16 2.9E-20 162.8 12.9 220 484-741 100-328 (329)
127 2ell_A Acidic leucine-rich nuc 99.6 9.2E-16 3.1E-20 145.2 11.2 134 581-748 23-161 (168)
128 2je0_A Acidic leucine-rich nuc 99.6 1E-15 3.5E-20 141.6 9.8 129 581-743 16-149 (149)
129 2o6r_A Variable lymphocyte rec 99.6 3.9E-15 1.3E-19 142.2 13.3 135 584-753 9-143 (177)
130 2ell_A Acidic leucine-rich nuc 99.6 2.4E-15 8.2E-20 142.3 11.4 136 557-728 24-164 (168)
131 2o6r_A Variable lymphocyte rec 99.5 2.1E-14 7.1E-19 137.1 12.3 133 559-727 9-141 (177)
132 2je0_A Acidic leucine-rich nuc 99.5 8.1E-15 2.8E-19 135.5 8.4 127 485-615 17-149 (149)
133 4fdw_A Leucine rich hypothetic 99.5 2.3E-13 7.9E-18 147.0 19.6 219 486-746 158-382 (401)
134 4fdw_A Leucine rich hypothetic 99.5 3.1E-13 1.1E-17 146.0 19.9 265 262-618 112-382 (401)
135 1ds9_A Outer arm dynein; leuci 99.5 5.8E-16 2E-20 150.9 -3.5 155 553-747 14-185 (198)
136 1a9n_A U2A', U2A'; complex (nu 99.5 6E-14 2E-18 133.6 9.7 81 665-747 67-153 (176)
137 3g39_A Variable lymphocyte rec 99.5 2.2E-13 7.6E-18 128.6 11.8 90 664-753 32-121 (170)
138 1a9n_A U2A', U2A'; complex (nu 99.4 1.8E-13 6E-18 130.4 9.8 130 484-619 18-153 (176)
139 1ds9_A Outer arm dynein; leuci 99.4 1.4E-15 4.7E-20 148.2 -5.1 133 552-724 43-186 (198)
140 2r9u_A Variable lymphocyte rec 99.4 6.1E-13 2.1E-17 125.9 11.8 90 664-753 35-124 (174)
141 3g39_A Variable lymphocyte rec 99.4 4.1E-13 1.4E-17 126.7 10.4 107 665-774 12-119 (170)
142 4fs7_A Uncharacterized protein 99.4 5.2E-12 1.8E-16 137.2 19.5 43 254-297 62-104 (394)
143 4fs7_A Uncharacterized protein 99.4 9.3E-12 3.2E-16 135.2 21.4 81 661-744 296-376 (394)
144 2r9u_A Variable lymphocyte rec 99.4 8.4E-13 2.9E-17 125.0 10.5 107 665-774 15-122 (174)
145 3un9_A NLR family member X1; l 99.3 5.2E-14 1.8E-18 150.6 -4.6 67 664-730 185-259 (372)
146 2ifg_A High affinity nerve gro 99.2 1.1E-11 3.8E-16 132.3 9.4 105 667-773 13-119 (347)
147 2ifg_A High affinity nerve gro 99.2 2E-11 6.9E-16 130.2 9.9 86 665-751 34-120 (347)
148 3un9_A NLR family member X1; l 99.2 3.3E-13 1.1E-17 144.3 -4.3 111 581-723 154-283 (372)
149 4gt6_A Cell surface protein; l 99.2 1E-09 3.5E-14 119.0 22.8 128 483-618 263-390 (394)
150 4gt6_A Cell surface protein; l 99.2 1.7E-09 5.9E-14 117.2 21.6 44 254-298 54-98 (394)
151 4h09_A Hypothetical leucine ri 98.9 1E-07 3.5E-12 102.7 22.8 106 505-614 213-318 (379)
152 4h09_A Hypothetical leucine ri 98.9 2.2E-07 7.5E-12 100.1 23.0 35 329-364 57-91 (379)
153 2ra8_A Uncharacterized protein 98.8 6.6E-10 2.3E-14 117.5 2.7 163 552-745 167-341 (362)
154 2ra8_A Uncharacterized protein 98.6 5.5E-08 1.9E-12 102.8 9.0 158 256-425 165-341 (362)
155 1io0_A Tropomodulin; LRR prote 98.4 3.1E-08 1.1E-12 94.3 0.3 122 78-199 27-163 (185)
156 1io0_A Tropomodulin; LRR prote 98.4 6.6E-08 2.2E-12 92.1 1.7 84 664-747 67-164 (185)
157 3rw6_A Nuclear RNA export fact 98.3 5.5E-07 1.9E-11 89.9 5.3 78 661-740 169-257 (267)
158 3rw6_A Nuclear RNA export fact 98.3 1.7E-07 5.7E-12 93.7 1.1 39 581-619 169-209 (267)
159 3e4g_A ATP synthase subunit S, 97.9 3.3E-06 1.1E-10 77.9 1.6 35 88-123 62-96 (176)
160 3e4g_A ATP synthase subunit S, 97.6 6.3E-05 2.1E-09 69.3 5.3 34 264-297 62-95 (176)
161 3rfe_A Platelet glycoprotein I 97.3 0.00033 1.1E-08 61.6 6.3 95 689-791 11-106 (130)
162 3rfe_A Platelet glycoprotein I 97.2 0.0007 2.4E-08 59.5 6.8 57 665-723 11-68 (130)
163 1pgv_A TMD-1, tropomodulin TMD 97.1 0.00021 7.2E-09 67.2 2.8 83 664-746 72-169 (197)
164 1pgv_A TMD-1, tropomodulin TMD 96.7 0.0019 6.4E-08 60.7 5.9 18 338-355 95-112 (197)
165 2lz0_A Uncharacterized protein 36.4 75 0.0026 25.5 6.1 44 498-542 9-52 (100)
166 2lz0_A Uncharacterized protein 34.7 38 0.0013 27.2 4.0 42 524-566 11-52 (100)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=3.4e-92 Score=838.51 Aligned_cols=723 Identities=29% Similarity=0.413 Sum_probs=524.6
Q ss_pred CCCCCCCHHHHHHHHHhhhcCcCCCCCCCCCCCCCCCCCCCcccceEecCCCCcEEEEECCCCCCCCCCccee---cCcc
Q 048006 6 SNIIRCIDEEREALLTFKASLVDESGVLSSWGPEDEKRDCCKWTGLRCSNKTNHVILLDLQPIDFDSFPLRGT---ISPA 82 (833)
Q Consensus 6 ~~~~~~~~~~~~~ll~~k~~~~~~~~~~~~w~~~~~~~~~c~w~gv~c~~~~~~v~~l~L~~~~~~~~~l~~~---~~~~ 82 (833)
+++..+.++|++||++||+++.||. ++++|+ .+++||+|+||+|+ ++||++|+|++ ..+.|. ++++
T Consensus 4 ~~~~~~~~~~~~all~~k~~~~~~~-~l~~W~---~~~~~C~w~gv~C~--~~~v~~L~L~~-----~~l~g~~~~l~~~ 72 (768)
T 3rgz_A 4 ASPSQSLYREIHQLISFKDVLPDKN-LLPDWS---SNKNPCTFDGVTCR--DDKVTSIDLSS-----KPLNVGFSAVSSS 72 (768)
T ss_dssp ----CCHHHHHHHHHHHHTTCSCTT-SSTTCC---TTSCGGGSTTEEEE--TTEEEEEECTT-----SCCCEEHHHHHHH
T ss_pred CccccCCHHHHHHHHHHHhhCCCcc-cccCCC---CCCCCcCCcceEEC--CCcEEEEECCC-----CCcCCccCccChh
Confidence 3445567899999999999999988 999997 47899999999998 69999999999 788998 8999
Q ss_pred ccCCCCCCEEeCCCCCCCCCCccccccCCCCCCEEEccCCCCCCCCCc--ccCCccccceecccCccCCCCCCcccccCC
Q 048006 83 LLKLHDLRHLNLSFNDFSGSPIPEFIGSLSKLRYLDLFGTVFAGPIPP--QLGNLSRLQHLDLGSNYLFSTGNLDWLSHL 160 (833)
Q Consensus 83 l~~l~~L~~L~Ls~n~~~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~--~~~~l~~L~~L~Ls~n~~~~~~~~~~l~~l 160 (833)
+.++++|+.++++.+.+. .+|+.|+.+++|++|+|++|.+.|.+|. .++++++|++|++++|.+........+.++
T Consensus 73 l~~L~~L~~l~~~~~~~~--~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l 150 (768)
T 3rgz_A 73 LLSLTGLESLFLSNSHIN--GSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKL 150 (768)
T ss_dssp TTTCTTCCEEECTTSCEE--ECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCC
T ss_pred HhccCcccccCCcCCCcC--CCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccC
Confidence 999999999999999876 4678999999999999999999998998 999999999999999998753344445899
Q ss_pred CCCcEEecCCCCCCCCchhHHh---hcCCCCCCEEEccCCCCCCCCCccccccccCCCCCEEEccCCcCCCCCCCccccc
Q 048006 161 SYLRYLNLDESNLANSSDWFQV---IGKLHSLKTLSLHSCYLPPVIPLSLNHLNSSTSLETLVLSDNNLTSSIYPWLPNI 237 (833)
Q Consensus 161 ~~L~~L~Ls~n~~~~~~~~~~~---l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l 237 (833)
++|++|++++|.+++. .+.. ++++++|++|++++|.+.+..|. ..+++|++|++++|.+++.+|. +.++
T Consensus 151 ~~L~~L~Ls~n~l~~~--~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-----~~l~~L~~L~Ls~n~l~~~~~~-l~~l 222 (768)
T 3rgz_A 151 NSLEVLDLSANSISGA--NVVGWVLSDGCGELKHLAISGNKISGDVDV-----SRCVNLEFLDVSSNNFSTGIPF-LGDC 222 (768)
T ss_dssp TTCSEEECCSSCCEEE--THHHHHHTTCCTTCCEEECCSSEEESCCBC-----TTCTTCCEEECCSSCCCSCCCB-CTTC
T ss_pred CCCCEEECCCCccCCc--CChhhhhhccCCCCCEEECCCCcccccCCc-----ccCCcCCEEECcCCcCCCCCcc-cccC
Confidence 9999999999999875 3344 78999999999999999887653 2348999999999999988777 8888
Q ss_pred ccCCcEEEccCccccccccccccCCCCCcEEECcCCcccccccccccCCCCCcEEEccCCCCCchhhHHHhhc-CCcccc
Q 048006 238 SSIFISIDLGFNQLQGSIPESFQHMVYLEHLRLSFNELEGGIPKFFGNMCSLITLNLSNNKLSGQLSEIIQNL-SSGCLE 316 (833)
Q Consensus 238 ~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l-~~~~~~ 316 (833)
++ |++|++++|.+++.+|..++.+++|++|++++|++++.+|.. .+++|++|++++|++++.+|..+... +
T Consensus 223 ~~-L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~----- 294 (768)
T 3rgz_A 223 SA-LQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACD----- 294 (768)
T ss_dssp CS-CCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCT-----
T ss_pred CC-CCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCcc--ccCCCCEEECcCCccCCccCHHHHhhcC-----
Confidence 88 999999999999888999999999999999999998877765 78899999999998887777665543 4
Q ss_pred CCccEEEcccccccccChhhhcCCCCCCEEECcCCccccccCCC-ccCCccccEEEccCccCCCCCChhhcccc-cccEE
Q 048006 317 NSLKSLYLENSLTGVISESFFSNISNLKELHLANNPLVLKLSHD-WVPPFQLIIISLSSCKIGPHFPKWLQTQN-QIELL 394 (833)
Q Consensus 317 ~~L~~L~L~~~~~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~l~~l~-~L~~L 394 (833)
+|++|++++|.+....+..|.++++|++|++++|.+.+.++.. +..+++|++|++++|.+++.+|..+..++ +|++|
T Consensus 295 -~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L 373 (768)
T 3rgz_A 295 -TLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTL 373 (768)
T ss_dssp -TCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEE
T ss_pred -cCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEE
Confidence 6667777555444333335666666666666666666554443 55555555555555555555555555554 55555
Q ss_pred eecCCccccccchhHHhh-cccccEEEcccccccccCCccccccCCCCCceecccCcccccCCCCCCCCceeecCCCccc
Q 048006 395 DISNTGISDTIPDWFWNL-SNKFSFLDLASNQIKGKLPNLSSRFGTSNPGIDISSNHFEGLIPPLPSNSSFLNLSKNRFS 473 (833)
Q Consensus 395 ~Ls~n~i~~~~~~~~~~~-~~~L~~L~L~~n~l~~~~p~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~L~~L~l~~n~l~ 473 (833)
++++|.+++.+|..+... .++|++|++++|.+++.+|... ..+ ++|+.|++++|+++
T Consensus 374 ~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l-~~l---------------------~~L~~L~Ls~N~l~ 431 (768)
T 3rgz_A 374 DLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTL-SNC---------------------SELVSLHLSFNYLS 431 (768)
T ss_dssp ECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGG-GGC---------------------TTCCEEECCSSEEE
T ss_pred EccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHH-hcC---------------------CCCCEEECcCCccc
Confidence 555555555555444331 1245555555555555444321 233 34455555555555
Q ss_pred ccccccccccCCcccEEEcCCCcCcCCCCCcccCCCCCcEEEccCCcccccCCCCccCcCCccEEEcccCcCccccCccc
Q 048006 474 GSISFLCSISGSKLTYVDLSSNLLSGKLPDCWWTFDSLVILNLENNSFSGRIPDSMGFLQNIQTLSLHNNRLTGELSSSF 553 (833)
Q Consensus 474 ~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 553 (833)
+.++..... +++|++|++++|.+++.+|..+..+++|++|++++|++++.+|..+..+++|++|++++|++++.+|..+
T Consensus 432 ~~~p~~l~~-l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~ 510 (768)
T 3rgz_A 432 GTIPSSLGS-LSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWI 510 (768)
T ss_dssp SCCCGGGGG-CTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGG
T ss_pred CcccHHHhc-CCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHH
Confidence 444432221 4556666666666665566666666666666666666665556556666666666666666666666666
Q ss_pred cCCCCCcEeccCCCccCCCCCcchhhcCCccceEEecCCcccccccccccCCCCCCEEeccCC-----------------
Q 048006 554 RNCSQLRLLDLGKNALYGEIPTWMGESLSNLIVLSLKSNKFHGKIPFQLCQLAFLQVLDLSLN----------------- 616 (833)
Q Consensus 554 ~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N----------------- 616 (833)
+.+++|++|++++|+++|.+|..+. .+++|++|++++|+++|.+|..+.....+..+++..+
T Consensus 511 ~~l~~L~~L~L~~N~l~~~~p~~l~-~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 589 (768)
T 3rgz_A 511 GRLENLAILKLSNNSFSGNIPAELG-DCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHG 589 (768)
T ss_dssp GGCTTCCEEECCSSCCEEECCGGGG-GCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCS
T ss_pred hcCCCCCEEECCCCcccCcCCHHHc-CCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccc
Confidence 6666666666666666655555555 4566666666666666666655555444433333221
Q ss_pred -----cCcccCCccccccccccccCCCCcccccceEEeeccCcchhccccCcccEEEccCCcCCCCCchhhhcccCCcEE
Q 048006 617 -----NISGKIPKCFNNFTAMTQERSSDPTIKDKLMLTWKGSEREYRSTLGLVKSLELSNNNLNGAVPEEIMDLVGLVAL 691 (833)
Q Consensus 617 -----~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L 691 (833)
.+.+..+..+..+..+...+++.+.+ .|.....+..+++|+.|||++|+++|.+|..++++++|+.|
T Consensus 590 ~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~--------~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L 661 (768)
T 3rgz_A 590 AGNLLEFQGIRSEQLNRLSTRNPCNITSRVY--------GGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFIL 661 (768)
T ss_dssp SEEEEECTTCCGGGGGGGGGTCCSCTTSCEE--------EEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEE
T ss_pred cccccccccccchhhhcccccccccccccee--------cccCchhhhccccccEEECcCCcccccCCHHHhccccCCEE
Confidence 12222333333333333333322222 22233334455667999999999999999999999999999
Q ss_pred ECCCccccccCCcccCCCCCCCEEeCCCCcCcccCCccccCCCCCCEEECcCCcCccCCCCccccCccccccccCCCCCC
Q 048006 692 NLSKNHLTGQISPKIGQLKSLDFLDLSRNQLVGGIPSSLSQLSGLSVMDLSYNNLSGKIPTVTQLQSFNDTVYAGNPELC 771 (833)
Q Consensus 692 ~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~l~~~~~~gn~~lc 771 (833)
+|++|+++|.+|..|+++++|++|||++|+++|.+|..+..+++|++||+++|+++|.||..+++.++...+|.|||++|
T Consensus 662 ~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lc 741 (768)
T 3rgz_A 662 NLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLC 741 (768)
T ss_dssp ECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSSSSGGGSCGGGGCSCTEEE
T ss_pred eCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCchhhccCCHHHhcCCchhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCCCCCCc
Q 048006 772 GLPLPNKCRDEESAAGPGIT 791 (833)
Q Consensus 772 ~~~~~~~c~~~~~~~~~~~~ 791 (833)
|.|+. .|....+..++++.
T Consensus 742 g~~l~-~C~~~~~~~~~~~~ 760 (768)
T 3rgz_A 742 GYPLP-RCDPSNADGYAHHQ 760 (768)
T ss_dssp STTSC-CCCSCC--------
T ss_pred CCCCc-CCCCCccCCCCCCC
Confidence 99987 89877777666654
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=2.8e-71 Score=658.84 Aligned_cols=663 Identities=26% Similarity=0.344 Sum_probs=481.4
Q ss_pred CCccc-ceEecCCCCcEEEEECCCCCCCCCCcceecCccccCCCCCCEEeCCCCCCCCCC---ccccccCCCCCCEEEcc
Q 048006 45 CCKWT-GLRCSNKTNHVILLDLQPIDFDSFPLRGTISPALLKLHDLRHLNLSFNDFSGSP---IPEFIGSLSKLRYLDLF 120 (833)
Q Consensus 45 ~c~w~-gv~c~~~~~~v~~l~L~~~~~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~---~p~~~~~l~~L~~L~Ls 120 (833)
--+|. +..|+.|.|.... . .+++.|+|+++.+.+ . +|+.+.++++|++++++
T Consensus 30 l~~W~~~~~~C~w~gv~C~---~--------------------~~v~~L~L~~~~l~g-~~~~l~~~l~~L~~L~~l~~~ 85 (768)
T 3rgz_A 30 LPDWSSNKNPCTFDGVTCR---D--------------------DKVTSIDLSSKPLNV-GFSAVSSSLLSLTGLESLFLS 85 (768)
T ss_dssp STTCCTTSCGGGSTTEEEE---T--------------------TEEEEEECTTSCCCE-EHHHHHHHTTTCTTCCEEECT
T ss_pred ccCCCCCCCCcCCcceEEC---C--------------------CcEEEEECCCCCcCC-ccCccChhHhccCcccccCCc
Confidence 34795 6677777664321 1 368899999999987 4 78889999999999999
Q ss_pred CCCCCCCCCcccCCccccceecccCccCCCCCCcc--cccCCCCCcEEecCCCCCCCCchhHHhh-cCCCCCCEEEccCC
Q 048006 121 GTVFAGPIPPQLGNLSRLQHLDLGSNYLFSTGNLD--WLSHLSYLRYLNLDESNLANSSDWFQVI-GKLHSLKTLSLHSC 197 (833)
Q Consensus 121 ~n~l~~~~p~~~~~l~~L~~L~Ls~n~~~~~~~~~--~l~~l~~L~~L~Ls~n~~~~~~~~~~~l-~~l~~L~~L~Ls~n 197 (833)
.+.+. .+|..|+++++|++|||++|.+.. ..+. .++++++|++|++++|.+.+. +|..+ .++++|++|++++|
T Consensus 86 ~~~~~-~l~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~l~~l~~L~~L~Ls~n~l~~~--~~~~~~~~l~~L~~L~Ls~n 161 (768)
T 3rgz_A 86 NSHIN-GSVSGFKCSASLTSLDLSRNSLSG-PVTTLTSLGSCSGLKFLNVSSNTLDFP--GKVSGGLKLNSLEVLDLSAN 161 (768)
T ss_dssp TSCEE-ECCCCCCCCTTCCEEECCSSEEEE-EGGGGGGGGGCTTCCEEECCSSEEECC--SSCCSCCCCTTCSEEECCSS
T ss_pred CCCcC-CCchhhccCCCCCEEECCCCcCCC-cCCChHHHhCCCCCCEEECcCCccCCc--CCHHHhccCCCCCEEECCCC
Confidence 99876 477889999999999999998863 2233 577777777777777776543 22233 56677777777777
Q ss_pred CCCCCCCccccccccCCCCCEEEccCCcCCCCCCCcccccccCCcEEEccCccccccccccccCCCCCcEEECcCCcccc
Q 048006 198 YLPPVIPLSLNHLNSSTSLETLVLSDNNLTSSIYPWLPNISSIFISIDLGFNQLQGSIPESFQHMVYLEHLRLSFNELEG 277 (833)
Q Consensus 198 ~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~ 277 (833)
.+++..|..+.....+++|++|++++|.+++..+. ..+++ |++|++++|.+++.+|. ++++++|++|++++|++++
T Consensus 162 ~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~--~~l~~-L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~ 237 (768)
T 3rgz_A 162 SISGANVVGWVLSDGCGELKHLAISGNKISGDVDV--SRCVN-LEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSG 237 (768)
T ss_dssp CCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBC--TTCTT-CCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCS
T ss_pred ccCCcCChhhhhhccCCCCCEEECCCCcccccCCc--ccCCc-CCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCC
Confidence 76665554211133336666666666666654432 44555 66666666666665554 6666666666666666666
Q ss_pred cccccccCCCCCcEEEccCCCCCchhhHHHhhcCCccccCCccEEEcccccc-cccChhhhcCCCCCCEEECcCCccccc
Q 048006 278 GIPKFFGNMCSLITLNLSNNKLSGQLSEIIQNLSSGCLENSLKSLYLENSLT-GVISESFFSNISNLKELHLANNPLVLK 356 (833)
Q Consensus 278 ~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~~~~~~L~~L~L~~~~~-~~i~~~~~~~l~~L~~L~L~~n~l~~~ 356 (833)
.+|..++.+++|++|++++|++++.+|.. .++ +|++|++++|.+ +.+|...+..+++|++|++++|.+.+.
T Consensus 238 ~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~------~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~ 309 (768)
T 3rgz_A 238 DFSRAISTCTELKLLNISSNQFVGPIPPL--PLK------SLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGA 309 (768)
T ss_dssp CHHHHTTTCSSCCEEECCSSCCEESCCCC--CCT------TCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEEC
T ss_pred cccHHHhcCCCCCEEECCCCcccCccCcc--ccC------CCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCc
Confidence 66666666666666666666665554432 333 555555533332 244443222235555555555555554
Q ss_pred cCCCccCCccccEEEccCccCCCCCChh-hcccccccEEeecCCccccccchhHHhhcccccEEEcccccccccCCcccc
Q 048006 357 LSHDWVPPFQLIIISLSSCKIGPHFPKW-LQTQNQIELLDISNTGISDTIPDWFWNLSNKFSFLDLASNQIKGKLPNLSS 435 (833)
Q Consensus 357 ~~~~~~~~~~L~~L~L~~~~l~~~~~~~-l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~ 435 (833)
.+..+..+++|++|++++|.+.+.+|.. +..+++|++|++++|++++.+|..+.....+|++|++++|++++.+|....
T Consensus 310 ~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~ 389 (768)
T 3rgz_A 310 VPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLC 389 (768)
T ss_dssp CCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTT
T ss_pred cchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhh
Confidence 4445555555555555555554444433 445555555555555555455554444433455555555544443332210
Q ss_pred ccCCCCCceecccCcccccCCCCCCCCceeecCCCcccccccccccccCCcccEEEcCCCcCcCCCCCcccCCCCCcEEE
Q 048006 436 RFGTSNPGIDISSNHFEGLIPPLPSNSSFLNLSKNRFSGSISFLCSISGSKLTYVDLSSNLLSGKLPDCWWTFDSLVILN 515 (833)
Q Consensus 436 ~~~~~l~~l~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~ 515 (833)
. ...++|+.|++++|++++.++..... +++|++|++++|.+++.+|..+..+++|++|+
T Consensus 390 ~--------------------~~~~~L~~L~L~~n~l~~~~p~~l~~-l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 448 (768)
T 3rgz_A 390 Q--------------------NPKNTLQELYLQNNGFTGKIPPTLSN-CSELVSLHLSFNYLSGTIPSSLGSLSKLRDLK 448 (768)
T ss_dssp C--------------------STTCCCCEEECCSSEEEEECCGGGGG-CTTCCEEECCSSEEESCCCGGGGGCTTCCEEE
T ss_pred h--------------------cccCCccEEECCCCccccccCHHHhc-CCCCCEEECcCCcccCcccHHHhcCCCCCEEE
Confidence 0 01356788888888888776654432 68999999999999999999999999999999
Q ss_pred ccCCcccccCCCCccCcCCccEEEcccCcCccccCccccCCCCCcEeccCCCccCCCCCcchhhcCCccceEEecCCccc
Q 048006 516 LENNSFSGRIPDSMGFLQNIQTLSLHNNRLTGELSSSFRNCSQLRLLDLGKNALYGEIPTWMGESLSNLIVLSLKSNKFH 595 (833)
Q Consensus 516 Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~ 595 (833)
+++|.+++.+|..+..+++|++|++++|++++.+|..+.++++|++|++++|++++.+|.++. .+++|++|++++|+++
T Consensus 449 L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~-~l~~L~~L~L~~N~l~ 527 (768)
T 3rgz_A 449 LWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIG-RLENLAILKLSNNSFS 527 (768)
T ss_dssp CCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGG-GCTTCCEEECCSSCCE
T ss_pred CCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHh-cCCCCCEEECCCCccc
Confidence 999999999999999999999999999999999999999999999999999999999999988 6999999999999999
Q ss_pred ccccccccCCCCCCEEeccCCcCcccCCccccccccccccCCCCc-ccc-------------cceEEeeccCcchhcccc
Q 048006 596 GKIPFQLCQLAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDP-TIK-------------DKLMLTWKGSEREYRSTL 661 (833)
Q Consensus 596 ~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~-~~~-------------~~~~~~~~~~~~~~~~~~ 661 (833)
+.+|..+..+++|+.|++++|+++|.+|..+.....+........ .+. ......+.+........+
T Consensus 528 ~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 607 (768)
T 3rgz_A 528 GNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRL 607 (768)
T ss_dssp EECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGG
T ss_pred CcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhcc
Confidence 999999999999999999999999999999888777655544321 110 001123344444445566
Q ss_pred CcccEEEccCCcCCCCCchhhhcccCCcEEECCCccccccCCcccCCCCCCCEEeCCCCcCcccCCccccCCCCCCEEEC
Q 048006 662 GLVKSLELSNNNLNGAVPEEIMDLVGLVALNLSKNHLTGQISPKIGQLKSLDFLDLSRNQLVGGIPSSLSQLSGLSVMDL 741 (833)
Q Consensus 662 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l 741 (833)
+.++.++++.|.+.|.+|..++.+++|++|||++|+++|.+|..++++++|+.|+|++|+++|.+|..++++++|++||+
T Consensus 608 ~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdL 687 (768)
T 3rgz_A 608 STRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDL 687 (768)
T ss_dssp GGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEEC
T ss_pred ccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEEC
Confidence 77788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcCccCCCCc-cccCccccccccCCCC
Q 048006 742 SYNNLSGKIPTV-TQLQSFNDTVYAGNPE 769 (833)
Q Consensus 742 s~N~l~g~ip~~-~~~~~l~~~~~~gn~~ 769 (833)
++|+++|.+|.. ..+..+..+++++|+.
T Consensus 688 s~N~l~g~ip~~l~~l~~L~~L~ls~N~l 716 (768)
T 3rgz_A 688 SSNKLDGRIPQAMSALTMLTEIDLSNNNL 716 (768)
T ss_dssp CSSCCEECCCGGGGGCCCCSEEECCSSEE
T ss_pred CCCcccCcCChHHhCCCCCCEEECcCCcc
Confidence 999999999976 6677788888888854
No 3
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=1.4e-61 Score=571.07 Aligned_cols=628 Identities=21% Similarity=0.216 Sum_probs=470.6
Q ss_pred cCccccCCCCCCEEeCCCCCCCCCCccccccCCCCCCEEEccCCCCCCCCCcccCCccccceecccCccCCCCCCccccc
Q 048006 79 ISPALLKLHDLRHLNLSFNDFSGSPIPEFIGSLSKLRYLDLFGTVFAGPIPPQLGNLSRLQHLDLGSNYLFSTGNLDWLS 158 (833)
Q Consensus 79 ~~~~l~~l~~L~~L~Ls~n~~~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~~~~~~~~~~l~ 158 (833)
+|..+. +++++|+|++|.+++. .+..|+++++|++|+|++|.+.+..|..|+++++|++|++++|.+.. .....|+
T Consensus 19 ip~~~~--~~l~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-l~~~~~~ 94 (680)
T 1ziw_A 19 VPDDLP--TNITVLNLTHNQLRRL-PAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQ-LSDKTFA 94 (680)
T ss_dssp CCSCSC--TTCSEEECCSSCCCCC-CGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCC-CCTTTTT
T ss_pred cccccC--CCCcEEECCCCCCCCc-CHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCc-cChhhhc
Confidence 444443 6788888888888874 55678888888888888888888888888888888888888888764 3334588
Q ss_pred CCCCCcEEecCCCCCCCCchhHHhhcCCCCCCEEEccCCCCCCCCCccccccccCCCCCEEEccCCcCCCCCCCccc--c
Q 048006 159 HLSYLRYLNLDESNLANSSDWFQVIGKLHSLKTLSLHSCYLPPVIPLSLNHLNSSTSLETLVLSDNNLTSSIYPWLP--N 236 (833)
Q Consensus 159 ~l~~L~~L~Ls~n~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~--~ 236 (833)
++++|++|++++|.+++++ +..++++++|++|++++|.+.+..|. .+.. +++|++|++++|.+++..+..+. .
T Consensus 95 ~l~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~Ls~n~l~~~~~~--~~~~-l~~L~~L~L~~n~l~~~~~~~~~~~~ 169 (680)
T 1ziw_A 95 FCTNLTELHLMSNSIQKIK--NNPFVKQKNLITLDLSHNGLSSTKLG--TQVQ-LENLQELLLSNNKIQALKSEELDIFA 169 (680)
T ss_dssp TCTTCSEEECCSSCCCCCC--SCTTTTCTTCCEEECCSSCCSCCCCC--SSSC-CTTCCEEECCSSCCCCBCHHHHGGGT
T ss_pred cCCCCCEEECCCCccCccC--hhHccccCCCCEEECCCCcccccCch--hhcc-cccCCEEEccCCcccccCHHHhhccc
Confidence 8888888888888887752 25678888889999988888877665 3333 38888999988888877666554 3
Q ss_pred cccCCcEEEccCccccccccccccCCCCCcEEECcCCccccccccccc---CCCCCcEEEccCCCCCchhhHHHhhcCCc
Q 048006 237 ISSIFISIDLGFNQLQGSIPESFQHMVYLEHLRLSFNELEGGIPKFFG---NMCSLITLNLSNNKLSGQLSEIIQNLSSG 313 (833)
Q Consensus 237 l~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~---~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~ 313 (833)
.++ |++|++++|.+++..|..+..+++|+.|+++++.+.......+. ..++|++|++++|.+++..|..+..++.
T Consensus 170 ~~~-L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~- 247 (680)
T 1ziw_A 170 NSS-LKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKW- 247 (680)
T ss_dssp TCE-ESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGG-
T ss_pred ccc-ccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCc-
Confidence 355 88889999988888888888888888898888887643322221 3478889999999888888877777650
Q ss_pred cccCCccEEEcccccccccChhhhcCCCCCCEEECcCCccccccCCCccCCccccEEEccCccCCC-----CCCh----h
Q 048006 314 CLENSLKSLYLENSLTGVISESFFSNISNLKELHLANNPLVLKLSHDWVPPFQLIIISLSSCKIGP-----HFPK----W 384 (833)
Q Consensus 314 ~~~~~L~~L~L~~~~~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~~~l~~-----~~~~----~ 384 (833)
.+|+.|++++|.+..+++..|..+++|++|++++|.+.+..+..+..+++|++|++++|...+ .+|. .
T Consensus 248 ---~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~ 324 (680)
T 1ziw_A 248 ---TNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFS 324 (680)
T ss_dssp ---SCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTT
T ss_pred ---CCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhh
Confidence 148899998777777777788889999999999999988888888889999999998875543 2332 6
Q ss_pred hcccccccEEeecCCccccccchhHHhhcccccEEEcccccccccCCccccccCCCCCceecccCcccccCCCCCCCCce
Q 048006 385 LQTQNQIELLDISNTGISDTIPDWFWNLSNKFSFLDLASNQIKGKLPNLSSRFGTSNPGIDISSNHFEGLIPPLPSNSSF 464 (833)
Q Consensus 385 l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~L~~ 464 (833)
+..+++|++|++++|.+++..+..|..+. +|++|++++|.+.+.... ...+.
T Consensus 325 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~Ls~n~~~~~~l~---------------~~~f~------------ 376 (680)
T 1ziw_A 325 FQWLKCLEHLNMEDNDIPGIKSNMFTGLI-NLKYLSLSNSFTSLRTLT---------------NETFV------------ 376 (680)
T ss_dssp TTTCTTCCEEECCSCCBCCCCTTTTTTCT-TCCEEECTTCBSCCCEEC---------------TTTTG------------
T ss_pred cccCCCCCEEECCCCccCCCChhHhcccc-CCcEEECCCCchhhhhcc---------------hhhhc------------
Confidence 78899999999999999988777776654 788888888765422110 00000
Q ss_pred eecCCCcccccccccccccCCcccEEEcCCCcCcCCCCCcccCCCCCcEEEccCCcccccCC-CCccCcCCccEEEcccC
Q 048006 465 LNLSKNRFSGSISFLCSISGSKLTYVDLSSNLLSGKLPDCWWTFDSLVILNLENNSFSGRIP-DSMGFLQNIQTLSLHNN 543 (833)
Q Consensus 465 L~l~~n~l~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~L~~n 543 (833)
....++|+.|++++|++++..|..|..+++|++|++++|.+++.+| ..+.++++|++|++++|
T Consensus 377 ----------------~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n 440 (680)
T 1ziw_A 377 ----------------SLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYN 440 (680)
T ss_dssp ----------------GGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSC
T ss_pred ----------------ccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCC
Confidence 0012578999999999998888899999999999999999987666 57889999999999999
Q ss_pred cCccccCccccCCCCCcEeccCCCccC--CCCCcchhhcCCccceEEecCCcccccccccccCCCCCCEEeccCCcCccc
Q 048006 544 RLTGELSSSFRNCSQLRLLDLGKNALY--GEIPTWMGESLSNLIVLSLKSNKFHGKIPFQLCQLAFLQVLDLSLNNISGK 621 (833)
Q Consensus 544 ~l~~~~~~~~~~l~~L~~L~L~~n~l~--~~~p~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~ 621 (833)
++.+..+..|..+++|+.|++++|.+. +.+|..+. .+++|++|++++|++++..+..+.++++|++|++++|++++.
T Consensus 441 ~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~-~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~ 519 (680)
T 1ziw_A 441 KYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQ-PLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARL 519 (680)
T ss_dssp SEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTT-TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGG
T ss_pred CcceeChhhhhcCcccccchhccccccccccCCcccc-cCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCcccc
Confidence 999888999999999999999999986 46777766 699999999999999988788899999999999999999864
Q ss_pred CCccccccccccccCCCCcccccceEEeeccCcchhccccCcccEEEccCCcCCCCCchhhhcccCCcEEECCCcccccc
Q 048006 622 IPKCFNNFTAMTQERSSDPTIKDKLMLTWKGSEREYRSTLGLVKSLELSNNNLNGAVPEEIMDLVGLVALNLSKNHLTGQ 701 (833)
Q Consensus 622 ~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ 701 (833)
.+..+.. .....+..+++|+.|+|++|+++...+..|.++++|++|+|++|++++.
T Consensus 520 ~~~~~~~------------------------~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l 575 (680)
T 1ziw_A 520 WKHANPG------------------------GPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTL 575 (680)
T ss_dssp GSTTSTT------------------------SCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC
T ss_pred chhhccC------------------------CcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcC
Confidence 3322110 0001123445669999999999954455789999999999999999987
Q ss_pred CCcccCCCCCCCEEeCCCCcCcccCCcccc-CCCCCCEEECcCCcCccCCCC-ccccCccccccccCCCCCCCCCCCCCC
Q 048006 702 ISPKIGQLKSLDFLDLSRNQLVGGIPSSLS-QLSGLSVMDLSYNNLSGKIPT-VTQLQSFNDTVYAGNPELCGLPLPNKC 779 (833)
Q Consensus 702 ~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~-~l~~L~~L~ls~N~l~g~ip~-~~~~~~l~~~~~~gn~~lc~~~~~~~c 779 (833)
.+..|..+++|+.|+|++|++++..|..+. .+++|+.+++++|++.|.++. .+...++... +...-+......|
T Consensus 576 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~~~~~~~~~~~~~----~~~~~~~~~~~~C 651 (680)
T 1ziw_A 576 PASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNWINET----HTNIPELSSHYLC 651 (680)
T ss_dssp CTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCCCCSSEECCSSCC-----------------
T ss_pred CHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCccHHHHHHHHHhc----CcccccccCCcEE
Confidence 777789999999999999999988888777 788999999999999999885 3322333221 1111111123468
Q ss_pred CCCCCCCCCCCccC
Q 048006 780 RDEESAAGPGITEG 793 (833)
Q Consensus 780 ~~~~~~~~~~~~~~ 793 (833)
..|+..+|..+.+.
T Consensus 652 ~~p~~~~g~~l~~~ 665 (680)
T 1ziw_A 652 NTPPHYHGFPVRLF 665 (680)
T ss_dssp --------------
T ss_pred CCchHHCCCccccc
Confidence 87777777555433
No 4
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=2e-59 Score=552.76 Aligned_cols=597 Identities=23% Similarity=0.238 Sum_probs=435.1
Q ss_pred CEEeCCCCCCCCCCccccccCCCCCCEEEccCCCCCCCCCcccCCccccceecccCccCCCCCCcccccCCCCCcEEecC
Q 048006 90 RHLNLSFNDFSGSPIPEFIGSLSKLRYLDLFGTVFAGPIPPQLGNLSRLQHLDLGSNYLFSTGNLDWLSHLSYLRYLNLD 169 (833)
Q Consensus 90 ~~L~Ls~n~~~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~Ls 169 (833)
+.++.++++++ .+|..+. +++++|+|++|.+.+..+..|.++++|++|++++|.+.. ..+..++++++|++|+++
T Consensus 7 ~~~~cs~~~L~--~ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~ 81 (680)
T 1ziw_A 7 EVADCSHLKLT--QVPDDLP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISK-LEPELCQKLPMLKVLNLQ 81 (680)
T ss_dssp SEEECCSSCCS--SCCSCSC--TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCC-CCTTHHHHCTTCCEEECC
T ss_pred CeeECCCCCcc--ccccccC--CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCc-cCHHHHhcccCcCEEECC
Confidence 56888888888 4777665 799999999999998777889999999999999999875 445678999999999999
Q ss_pred CCCCCCCchhHHhhcCCCCCCEEEccCCCCCCCCCccccccccCCCCCEEEccCCcCCCCCCCcccccccCCcEEEccCc
Q 048006 170 ESNLANSSDWFQVIGKLHSLKTLSLHSCYLPPVIPLSLNHLNSSTSLETLVLSDNNLTSSIYPWLPNISSIFISIDLGFN 249 (833)
Q Consensus 170 ~n~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~~L~~L~Ls~n 249 (833)
+|.++.++. ..++++++|++|++++|.+.+..|. .+.. +++|++|++++|.+++..+..+.++++ |++|++++|
T Consensus 82 ~n~l~~l~~--~~~~~l~~L~~L~L~~n~l~~~~~~--~~~~-l~~L~~L~Ls~n~l~~~~~~~~~~l~~-L~~L~L~~n 155 (680)
T 1ziw_A 82 HNELSQLSD--KTFAFCTNLTELHLMSNSIQKIKNN--PFVK-QKNLITLDLSHNGLSSTKLGTQVQLEN-LQELLLSNN 155 (680)
T ss_dssp SSCCCCCCT--TTTTTCTTCSEEECCSSCCCCCCSC--TTTT-CTTCCEEECCSSCCSCCCCCSSSCCTT-CCEEECCSS
T ss_pred CCccCccCh--hhhccCCCCCEEECCCCccCccChh--Hccc-cCCCCEEECCCCcccccCchhhccccc-CCEEEccCC
Confidence 999987532 3588999999999999999877665 3333 389999999999999888888888888 999999999
Q ss_pred ccccccccccc--CCCCCcEEECcCCcccccccccccCCCCCcEEEccCCCCCchhhHHHhh---cCCccccCCccEEEc
Q 048006 250 QLQGSIPESFQ--HMVYLEHLRLSFNELEGGIPKFFGNMCSLITLNLSNNKLSGQLSEIIQN---LSSGCLENSLKSLYL 324 (833)
Q Consensus 250 ~l~~~~p~~~~--~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~---l~~~~~~~~L~~L~L 324 (833)
.+++..+..+. .+++|++|++++|++++..|..+..+++|+.|+++++.+.+.....+.. .+ +|+.|++
T Consensus 156 ~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~------~L~~L~L 229 (680)
T 1ziw_A 156 KIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANT------SIRNLSL 229 (680)
T ss_dssp CCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTS------CCCEEEC
T ss_pred cccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhc------cccEEEc
Confidence 99887777654 5688999999999999888888999999999999988876544332221 12 4555555
Q ss_pred ccccccccChhhhcCCCC--CCEEECcCCccccccCCCccCCccccEEEccCccCCCCCChhhcccccccEEeecCCccc
Q 048006 325 ENSLTGVISESFFSNISN--LKELHLANNPLVLKLSHDWVPPFQLIIISLSSCKIGPHFPKWLQTQNQIELLDISNTGIS 402 (833)
Q Consensus 325 ~~~~~~~i~~~~~~~l~~--L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~n~i~ 402 (833)
+++.+..+++..|.+++. |++|++++|.+.+ ..|.++..+++|++|++++|.++
T Consensus 230 ~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~------------------------~~~~~~~~l~~L~~L~L~~n~l~ 285 (680)
T 1ziw_A 230 SNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNV------------------------VGNDSFAWLPQLEYFFLEYNNIQ 285 (680)
T ss_dssp TTSCCCEECTTTTGGGGGSCCCEEECTTSCCCE------------------------ECTTTTTTCTTCCEEECCSCCBS
T ss_pred cCCcccccChhHhhccCcCCCCEEECCCCCcCc------------------------cCcccccCcccccEeeCCCCccC
Confidence 444444444434444432 5555555555444 44444455555555555555555
Q ss_pred cccchhHHhhcccccEEEcccccccccCCccccccCCCCCceecccCcccccCCCCCCCCceeecCCCcccccccccccc
Q 048006 403 DTIPDWFWNLSNKFSFLDLASNQIKGKLPNLSSRFGTSNPGIDISSNHFEGLIPPLPSNSSFLNLSKNRFSGSISFLCSI 482 (833)
Q Consensus 403 ~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~ 482 (833)
+..|..+.... +|++|++++|...+.++.. .+.. +. ......+++|+.|++++|++.+..+... .
T Consensus 286 ~~~~~~~~~l~-~L~~L~L~~~~~~~~~~~~------~lp~--i~-----~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~ 350 (680)
T 1ziw_A 286 HLFSHSLHGLF-NVRYLNLKRSFTKQSISLA------SLPK--ID-----DFSFQWLKCLEHLNMEDNDIPGIKSNMF-T 350 (680)
T ss_dssp EECTTTTTTCT-TCCEEECTTCBCCC------------CCE--EC-----TTTTTTCTTCCEEECCSCCBCCCCTTTT-T
T ss_pred ccChhhhcCCC-CccEEeccchhhhcccccc------cccc--cC-----hhhcccCCCCCEEECCCCccCCCChhHh-c
Confidence 44444444332 4555555544333221100 0000 00 0000112344555555555544333221 1
Q ss_pred cCCcccEEEcCCCcCcCC--CCCcccCC--CCCcEEEccCCcccccCCCCccCcCCccEEEcccCcCccccC-ccccCCC
Q 048006 483 SGSKLTYVDLSSNLLSGK--LPDCWWTF--DSLVILNLENNSFSGRIPDSMGFLQNIQTLSLHNNRLTGELS-SSFRNCS 557 (833)
Q Consensus 483 ~~~~L~~L~ls~n~l~~~--~~~~~~~l--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~ 557 (833)
.+++|++|++++|.+... .+..|..+ ++|+.|++++|++++..|..|..+++|++|++++|.+++.+| ..|.+++
T Consensus 351 ~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~ 430 (680)
T 1ziw_A 351 GLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLE 430 (680)
T ss_dssp TCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCT
T ss_pred cccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcc
Confidence 257788888888865432 22333332 578899999999888888888888899999999998887665 6788888
Q ss_pred CCcEeccCCCccCCCCCcchhhcCCccceEEecCCccc--ccccccccCCCCCCEEeccCCcCcccCCcccccccccccc
Q 048006 558 QLRLLDLGKNALYGEIPTWMGESLSNLIVLSLKSNKFH--GKIPFQLCQLAFLQVLDLSLNNISGKIPKCFNNFTAMTQE 635 (833)
Q Consensus 558 ~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~--~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l 635 (833)
+|++|++++|++.+..+..+. .+++|++|++++|.+. +.+|..+..+++|+.|++++|++++..|..|..+++|
T Consensus 431 ~L~~L~Ls~n~l~~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L--- 506 (680)
T 1ziw_A 431 NIFEIYLSYNKYLQLTRNSFA-LVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKL--- 506 (680)
T ss_dssp TCCEEECCSCSEEECCTTTTT-TCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC---
T ss_pred cccEEecCCCCcceeChhhhh-cCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhcccccc---
Confidence 899999999988744444444 6888999999988876 5678888888899999999998887777777776666
Q ss_pred CCCCcccccceEEeeccCcchhccccCcccEEEccCCcCCCCC--------chhhhcccCCcEEECCCccccccCCcccC
Q 048006 636 RSSDPTIKDKLMLTWKGSEREYRSTLGLVKSLELSNNNLNGAV--------PEEIMDLVGLVALNLSKNHLTGQISPKIG 707 (833)
Q Consensus 636 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~--------p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~ 707 (833)
+.|++++|++++.. +..+.++++|++|+|++|+++...+..|.
T Consensus 507 -----------------------------~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~ 557 (680)
T 1ziw_A 507 -----------------------------EILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFK 557 (680)
T ss_dssp -----------------------------CEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred -----------------------------CEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcc
Confidence 99999999998542 22478999999999999999965556799
Q ss_pred CCCCCCEEeCCCCcCcccCCccccCCCCCCEEECcCCcCccCCCCc-c-ccCccccccccCCCCCCCCCC
Q 048006 708 QLKSLDFLDLSRNQLVGGIPSSLSQLSGLSVMDLSYNNLSGKIPTV-T-QLQSFNDTVYAGNPELCGLPL 775 (833)
Q Consensus 708 ~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~-~-~~~~l~~~~~~gn~~lc~~~~ 775 (833)
++++|+.|+|++|++++..+..|..+++|+.|++++|++++.+|.. . .+..+..+++.||||.|+|+.
T Consensus 558 ~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~~ 627 (680)
T 1ziw_A 558 DLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCES 627 (680)
T ss_dssp TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCCC
T ss_pred cccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCcc
Confidence 9999999999999999888888899999999999999999887754 2 567888899999999999874
No 5
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=8.1e-57 Score=523.35 Aligned_cols=571 Identities=21% Similarity=0.216 Sum_probs=390.2
Q ss_pred EEECCCCCCCCCCcceecCccccCCCCCCEEeCCCCCCCCCCccccccCCCCCCEEEccCCCCCCCCCcccCCcccccee
Q 048006 62 LLDLQPIDFDSFPLRGTISPALLKLHDLRHLNLSFNDFSGSPIPEFIGSLSKLRYLDLFGTVFAGPIPPQLGNLSRLQHL 141 (833)
Q Consensus 62 ~l~L~~~~~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L 141 (833)
.++.++ ..++ .+|..+.. ++++|+|++|.+++. .|..|+++++|++|+|++|.+.+..|.+|+++++|++|
T Consensus 16 ~~~c~~-----~~l~-~iP~~l~~--~l~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 86 (606)
T 3t6q_A 16 TYNCEN-----LGLN-EIPGTLPN--STECLEFSFNVLPTI-QNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTL 86 (606)
T ss_dssp EEECTT-----SCCS-SCCTTSCT--TCCEEECTTCCCSEE-CTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEE
T ss_pred eEECCC-----CCcc-cCcCCCCC--cCcEEEccCCccCcC-ChhHhccCccceEEECCCCccceeChhhccCccccCee
Confidence 356665 3333 45555543 689999999999875 67889999999999999999988888899999999999
Q ss_pred cccCccCCCCCCcccccCCCCCcEEecCCCCCCCCchhHHhhcCCCCCCEEEccCCCCCCCCCccccccccCCCCCEEEc
Q 048006 142 DLGSNYLFSTGNLDWLSHLSYLRYLNLDESNLANSSDWFQVIGKLHSLKTLSLHSCYLPPVIPLSLNHLNSSTSLETLVL 221 (833)
Q Consensus 142 ~Ls~n~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~L 221 (833)
++++|.+.. ..+..++++++|++|++++|.+++.. +..++++++|++|++++|.+.+
T Consensus 87 ~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~n~i~~l~--~~~~~~l~~L~~L~L~~n~l~~-------------------- 143 (606)
T 3t6q_A 87 VLTANPLIF-MAETALSGPKALKHLFFIQTGISSID--FIPLHNQKTLESLYLGSNHISS-------------------- 143 (606)
T ss_dssp ECTTCCCSE-ECTTTTSSCTTCCEEECTTSCCSCGG--GSCCTTCTTCCEEECCSSCCCC--------------------
T ss_pred eCCCCcccc-cChhhhcccccccEeeccccCcccCC--cchhccCCcccEEECCCCcccc--------------------
Confidence 999998764 33445667777777777777666532 2234555555555555555444
Q ss_pred cCCcCCCCCCCcccccccCCcEEEccCccccccccccccCCCCCc--EEECcCCcccccccccccCCCCCcEEEccCCCC
Q 048006 222 SDNNLTSSIYPWLPNISSIFISIDLGFNQLQGSIPESFQHMVYLE--HLRLSFNELEGGIPKFFGNMCSLITLNLSNNKL 299 (833)
Q Consensus 222 s~n~l~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~--~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l 299 (833)
..++.+..+++ |++|++++|.+++..|..|+.+++|+ +|++++|.+++..|..+.. .+|++|++++|.
T Consensus 144 -------~~~~~~~~l~~-L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~-~~L~~L~l~~~~- 213 (606)
T 3t6q_A 144 -------IKLPKGFPTEK-LKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDS-AVFQSLNFGGTQ- 213 (606)
T ss_dssp -------CCCCTTCCCTT-CCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTT-CEEEEEECTTCS-
T ss_pred -------cCcccccCCcc-cCEEEcccCcccccChhhhhhhcccceeEEecCCCccCccChhHhhh-ccccccccCCch-
Confidence 22222223444 66666666666666666777777777 7788888877766665543 578888888776
Q ss_pred CchhhHHHhhcCCccccCCcc--EEEc---ccccccccChhhhcCCCCCCEEECcCCccccccCCCccCCccccEEEccC
Q 048006 300 SGQLSEIIQNLSSGCLENSLK--SLYL---ENSLTGVISESFFSNISNLKELHLANNPLVLKLSHDWVPPFQLIIISLSS 374 (833)
Q Consensus 300 ~~~~~~~l~~l~~~~~~~~L~--~L~L---~~~~~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~ 374 (833)
..+..+..+. .+. .+.+ .+.....++...|..+. ..+|+.|++++
T Consensus 214 --~~~~~~~~l~------~~~l~~l~~~~~~~~~~~~i~~~~~~~l~----------------------~~~L~~L~l~~ 263 (606)
T 3t6q_A 214 --NLLVIFKGLK------NSTIQSLWLGTFEDMDDEDISPAVFEGLC----------------------EMSVESINLQK 263 (606)
T ss_dssp --CHHHHHHHTT------TCEEEEEECCCCTTSCCCCCCGGGGGGGG----------------------GSEEEEEECTT
T ss_pred --hHHHHhhhcc------ccchhheechhhccccccccChhHhchhh----------------------cCceeEEEeec
Confidence 3445555554 333 2322 11112223333333322 01344444444
Q ss_pred ccCCCCCChhhcccccccEEeecCCccccccchhHHhhcccccEEEcccccccccCCccccccCCCCCceecccCccccc
Q 048006 375 CKIGPHFPKWLQTQNQIELLDISNTGISDTIPDWFWNLSNKFSFLDLASNQIKGKLPNLSSRFGTSNPGIDISSNHFEGL 454 (833)
Q Consensus 375 ~~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~~l~~l~l~~n~l~~~ 454 (833)
|.+++..+..+..+++|++|++++|.++ .+|..+..+ ++|++|++++|.+.+..|..
T Consensus 264 n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l-~~L~~L~l~~n~l~~~~~~~--------------------- 320 (606)
T 3t6q_A 264 HYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGL-STLKKLVLSANKFENLCQIS--------------------- 320 (606)
T ss_dssp CCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSC-TTCCEEECTTCCCSBGGGGC---------------------
T ss_pred CccCccCHHHhccccCCCEEeccCCccC-CCChhhccc-ccCCEEECccCCcCcCchhh---------------------
Confidence 4444444444555555555555555554 333333222 23444444444433222211
Q ss_pred CCCCCCCCceeecCCCcccccccccccccCCcccEEEcCCCcCcCCCCC-cccCCCCCcEEEccCCcccccC--CCCccC
Q 048006 455 IPPLPSNSSFLNLSKNRFSGSISFLCSISGSKLTYVDLSSNLLSGKLPD-CWWTFDSLVILNLENNSFSGRI--PDSMGF 531 (833)
Q Consensus 455 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~--~~~~~~ 531 (833)
...+++|++|++++|.+.+.++. .+..+++|++|++++|.+++.. +..+..
T Consensus 321 --------------------------~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~ 374 (606)
T 3t6q_A 321 --------------------------ASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRN 374 (606)
T ss_dssp --------------------------GGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTT
T ss_pred --------------------------hhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhccc
Confidence 00136677777777777655544 4778888888888888888765 777888
Q ss_pred cCCccEEEcccCcCccccCccccCCCCCcEeccCCCccCCCCCcchhhcCCccceEEecCCcccccccccccCCCCCCEE
Q 048006 532 LQNIQTLSLHNNRLTGELSSSFRNCSQLRLLDLGKNALYGEIPTWMGESLSNLIVLSLKSNKFHGKIPFQLCQLAFLQVL 611 (833)
Q Consensus 532 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L 611 (833)
+++|++|++++|++.+..|..|..+++|++|++++|++.+..|...+..+++|++|++++|.+.+..|..+..+++|++|
T Consensus 375 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 454 (606)
T 3t6q_A 375 LSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHL 454 (606)
T ss_dssp CTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEE
T ss_pred CCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEE
Confidence 89999999999999888888899999999999999998877666645578999999999999998888889999999999
Q ss_pred eccCCcCccc---CCccccccccccccCCCCcccccceEEeeccCcchhccccCcccEEEccCCcCCCCCchhhhcccCC
Q 048006 612 DLSLNNISGK---IPKCFNNFTAMTQERSSDPTIKDKLMLTWKGSEREYRSTLGLVKSLELSNNNLNGAVPEEIMDLVGL 688 (833)
Q Consensus 612 ~Ls~N~l~~~---~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L 688 (833)
++++|++.+. .+..+..+++| +.|++++|++++..|..|..+++|
T Consensus 455 ~L~~n~l~~~~~~~~~~~~~l~~L--------------------------------~~L~Ls~n~l~~~~~~~~~~l~~L 502 (606)
T 3t6q_A 455 NLQGNHFPKGNIQKTNSLQTLGRL--------------------------------EILVLSFCDLSSIDQHAFTSLKMM 502 (606)
T ss_dssp ECTTCBCGGGEECSSCGGGGCTTC--------------------------------CEEECTTSCCCEECTTTTTTCTTC
T ss_pred ECCCCCCCccccccchhhccCCCc--------------------------------cEEECCCCccCccChhhhccccCC
Confidence 9999999763 22345554444 999999999998889999999999
Q ss_pred cEEECCCccccccCCcccCCCCCCCEEeCCCCcCcccCCccccCCCCCCEEECcCCcCccCCCCccccCccccccccCCC
Q 048006 689 VALNLSKNHLTGQISPKIGQLKSLDFLDLSRNQLVGGIPSSLSQLSGLSVMDLSYNNLSGKIPTVTQLQSFNDTVYAGNP 768 (833)
Q Consensus 689 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~l~~~~~~gn~ 768 (833)
++|+|++|++++.+|..+.++++| .|++++|++++.+|..+..+++|++|++++|++.|.++......++....
T Consensus 503 ~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~~~~~~w~~~~~----- 576 (606)
T 3t6q_A 503 NHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCSNIYFLEWYKENM----- 576 (606)
T ss_dssp CEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGGGHHHHHHHHHCG-----
T ss_pred CEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCCcHHHHHHHHhCc-----
Confidence 999999999999999999999999 99999999999999999999999999999999999888654333332110
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCc
Q 048006 769 ELCGLPLPNKCRDEESAAGPGIT 791 (833)
Q Consensus 769 ~lc~~~~~~~c~~~~~~~~~~~~ 791 (833)
..-.......|..|...++.++.
T Consensus 577 ~~~~~~~~~~C~~p~~~~g~~l~ 599 (606)
T 3t6q_A 577 QKLEDTEDTLCENPPLLRGVRLS 599 (606)
T ss_dssp GGEECGGGCBEEESGGGTTCBGG
T ss_pred ccccCCCCCeeCCchHhCCCeee
Confidence 00000112467777666665554
No 6
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=2.5e-56 Score=535.85 Aligned_cols=560 Identities=22% Similarity=0.256 Sum_probs=361.6
Q ss_pred CCCCCCEEeCCCCCCCCCCccccccCCCCCCEEEccCCCCCCCC-CcccCCccccceecccCccCCCCCCcccccCCCCC
Q 048006 85 KLHDLRHLNLSFNDFSGSPIPEFIGSLSKLRYLDLFGTVFAGPI-PPQLGNLSRLQHLDLGSNYLFSTGNLDWLSHLSYL 163 (833)
Q Consensus 85 ~l~~L~~L~Ls~n~~~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~-p~~~~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L 163 (833)
-.+++++|||++|.+++. .|..|..+++|++|+|++|.+.+.+ |.+|.++++|++|+|++|.+.. ..+..++++++|
T Consensus 22 lp~~l~~LdLs~N~i~~i-~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~-~~p~~~~~l~~L 99 (844)
T 3j0a_A 22 VLNTTERLLLSFNYIRTV-TASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYF-LHPDAFQGLFHL 99 (844)
T ss_dssp SCTTCCEEEEESCCCCEE-CSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCE-ECTTSSCSCSSC
T ss_pred CCCCcCEEECCCCcCCcc-ChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcc-cCHhHccCCccc
Confidence 346788888888888764 6777888888888888888665555 6778888888888888887754 345567777777
Q ss_pred cEEecCCCCCCCCchhHH--hhcCCCCCCEEEccCCCCCCCCCccccccccCCCCCEEEccCCcCCCCCCCccccc--cc
Q 048006 164 RYLNLDESNLANSSDWFQ--VIGKLHSLKTLSLHSCYLPPVIPLSLNHLNSSTSLETLVLSDNNLTSSIYPWLPNI--SS 239 (833)
Q Consensus 164 ~~L~Ls~n~~~~~~~~~~--~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l--~~ 239 (833)
++|+|++|.+++. ++. .++++++|++|+|++|.+.+..+. ..+..+++|++|++++|.+++..+..+..+ ++
T Consensus 100 ~~L~Ls~n~l~~~--~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~--~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~ 175 (844)
T 3j0a_A 100 FELRLYFCGLSDA--VLKDGYFRNLKALTRLDLSKNQIRSLYLH--PSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKT 175 (844)
T ss_dssp CCEECTTCCCSSC--CSTTCCCSSCSSCCEEEEESCCCCCCCCC--GGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCS
T ss_pred CEeeCcCCCCCcc--cccCccccccCCCCEEECCCCcccccccc--hhHhhCCCCCEEECCCCcCCeeCHHHcccccCCc
Confidence 7777777777652 222 266677777777777766665442 222333666666666666666666665554 44
Q ss_pred CCcEEEccCccccccccccccCCCC------CcEEECcCCcccccccccccCC---CCCcEEEccCCCCCchhhHHHhhc
Q 048006 240 IFISIDLGFNQLQGSIPESFQHMVY------LEHLRLSFNELEGGIPKFFGNM---CSLITLNLSNNKLSGQLSEIIQNL 310 (833)
Q Consensus 240 ~L~~L~Ls~n~l~~~~p~~~~~l~~------L~~L~L~~n~l~~~~p~~l~~l---~~L~~L~Ls~n~l~~~~~~~l~~l 310 (833)
|+.|+++.|.+.+..|..++.+++ |++|++++|.+++..+..+... ++++.+.++.+.....
T Consensus 176 -L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~-------- 246 (844)
T 3j0a_A 176 -LSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAG-------- 246 (844)
T ss_dssp -SCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCS--------
T ss_pred -cceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceeccccccccc--------
Confidence 666666666666655555544443 5555555555555444444321 3444444443221110
Q ss_pred CCccccCCccEEEcccccccccChhhhcCC--CCCCEEECcCCccccccCCCccCCccccEEEccCccCCCCCChhhccc
Q 048006 311 SSGCLENSLKSLYLENSLTGVISESFFSNI--SNLKELHLANNPLVLKLSHDWVPPFQLIIISLSSCKIGPHFPKWLQTQ 388 (833)
Q Consensus 311 ~~~~~~~~L~~L~L~~~~~~~i~~~~~~~l--~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~l 388 (833)
...+.+..+....|..+ ++|++|++++|.+.+ ..+..+..+
T Consensus 247 -------------~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~------------------------~~~~~~~~l 289 (844)
T 3j0a_A 247 -------------FGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFS------------------------LNSRVFETL 289 (844)
T ss_dssp -------------SSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCE------------------------ECSCCSSSC
T ss_pred -------------ccccccCCCChhhhhccccCCccEEECCCCcccc------------------------cChhhhhcC
Confidence 00111111222223332 345555555555444 444445555
Q ss_pred ccccEEeecCCccccccchhHHhhcccccEEEcccccccccCCccccccCCCCCceecccCcccccCCCCCCCCceeecC
Q 048006 389 NQIELLDISNTGISDTIPDWFWNLSNKFSFLDLASNQIKGKLPNLSSRFGTSNPGIDISSNHFEGLIPPLPSNSSFLNLS 468 (833)
Q Consensus 389 ~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~L~~L~l~ 468 (833)
++|+.|++++|++++..|..|..+. +|++|++++|.+++..|..
T Consensus 290 ~~L~~L~L~~n~i~~~~~~~~~~l~-~L~~L~Ls~N~l~~~~~~~----------------------------------- 333 (844)
T 3j0a_A 290 KDLKVLNLAYNKINKIADEAFYGLD-NLQVLNLSYNLLGELYSSN----------------------------------- 333 (844)
T ss_dssp CCCCEEEEESCCCCEECTTTTTTCS-SCCEEEEESCCCSCCCSCS-----------------------------------
T ss_pred CCCCEEECCCCcCCCCChHHhcCCC-CCCEEECCCCCCCccCHHH-----------------------------------
Confidence 5555555555555544444443332 4444544444444322211
Q ss_pred CCcccccccccccccCCcccEEEcCCCcCcCCCCCcccCCCCCcEEEccCCcccccCCCCccCcCCccEEEcccCcCccc
Q 048006 469 KNRFSGSISFLCSISGSKLTYVDLSSNLLSGKLPDCWWTFDSLVILNLENNSFSGRIPDSMGFLQNIQTLSLHNNRLTGE 548 (833)
Q Consensus 469 ~n~l~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 548 (833)
+..+++|++|++++|.+.+..+..|..+++|++|++++|.+++. ..+++|+.|++++|+++ .
T Consensus 334 ------------~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i-----~~~~~L~~L~l~~N~l~-~ 395 (844)
T 3j0a_A 334 ------------FYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTI-----HFIPSIPDIFLSGNKLV-T 395 (844)
T ss_dssp ------------CSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCC-----SSCCSCSEEEEESCCCC-C
T ss_pred ------------hcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcc-----cCCCCcchhccCCCCcc-c
Confidence 00136778888888888777777788888888888888888742 23678888888888887 3
Q ss_pred cCccccCCCCCcEeccCCCccCCCCCc-chhhcCCccceEEecCCcccccccc-cccCCCCCCEEeccCCcCcccC----
Q 048006 549 LSSSFRNCSQLRLLDLGKNALYGEIPT-WMGESLSNLIVLSLKSNKFHGKIPF-QLCQLAFLQVLDLSLNNISGKI---- 622 (833)
Q Consensus 549 ~~~~~~~l~~L~~L~L~~n~l~~~~p~-~~~~~l~~L~~L~L~~N~l~~~~~~-~l~~l~~L~~L~Ls~N~l~~~~---- 622 (833)
+|.. ..+++.|++++|++.+ ++. .....+++|++|++++|++++..+. .+..+++|+.|++++|.+++..
T Consensus 396 l~~~---~~~l~~L~ls~N~l~~-l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~ 471 (844)
T 3j0a_A 396 LPKI---NLTANLIHLSENRLEN-LDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETEL 471 (844)
T ss_dssp CCCC---CTTCCEEECCSCCCCS-STTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCC
T ss_pred cccc---ccccceeecccCcccc-CchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCcccccccccc
Confidence 4432 4578888888888873 332 2223588888999999888855433 3556788999999999887332
Q ss_pred -CccccccccccccCCCCcccccceEEeeccCcchhccccCcccEEEccCCcCCCCCchhhhcccCCcEEECCCcccccc
Q 048006 623 -PKCFNNFTAMTQERSSDPTIKDKLMLTWKGSEREYRSTLGLVKSLELSNNNLNGAVPEEIMDLVGLVALNLSKNHLTGQ 701 (833)
Q Consensus 623 -p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ 701 (833)
+..|..+ ++|+.|+|++|++++..|..|..+++|++|+|++|++++.
T Consensus 472 ~~~~~~~l--------------------------------~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l 519 (844)
T 3j0a_A 472 CWDVFEGL--------------------------------SHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVL 519 (844)
T ss_dssp CSSCSSCB--------------------------------CCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSC
T ss_pred chhhhcCc--------------------------------ccccEEECCCCcccccChhHccchhhhheeECCCCCCCcc
Confidence 3334443 4458899999999988888889999999999999999987
Q ss_pred CCcccCCCCCCCEEeCCCCcCcccCCccccCCCCCCEEECcCCcCccCCCCccccCccccccccCCCCCCCCCCCCCCCC
Q 048006 702 ISPKIGQLKSLDFLDLSRNQLVGGIPSSLSQLSGLSVMDLSYNNLSGKIPTVTQLQSFNDTVYAGNPELCGLPLPNKCRD 781 (833)
Q Consensus 702 ~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~l~~~~~~gn~~lc~~~~~~~c~~ 781 (833)
.|..+. ++|+.|+|++|++++.+|..+. +|+.|++++|++.|.++... |......++..+||.+....|..
T Consensus 520 ~~~~~~--~~L~~L~Ls~N~l~~~~~~~~~---~L~~l~l~~Np~~C~c~~~~----f~~~~~~~~~~~~~~~~~~~C~~ 590 (844)
T 3j0a_A 520 SHNDLP--ANLEILDISRNQLLAPNPDVFV---SLSVLDITHNKFICECELST----FINWLNHTNVTIAGPPADIYCVY 590 (844)
T ss_dssp CCCCCC--SCCCEEEEEEECCCCCCSCCCS---SCCEEEEEEECCCCSSSCCS----HHHHHHHTTTTTCCCGGGCCCSS
T ss_pred Chhhhh--ccccEEECCCCcCCCCChhHhC---CcCEEEecCCCcccccccHH----HHHHHHhcCcccccccccCccCC
Confidence 777666 8899999999999998887764 68899999999999887543 22222345667777777778998
Q ss_pred CCCCCCCCCccCCC
Q 048006 782 EESAAGPGITEGRD 795 (833)
Q Consensus 782 ~~~~~~~~~~~~~~ 795 (833)
|...++.+..+...
T Consensus 591 p~~~~g~~l~~~~~ 604 (844)
T 3j0a_A 591 PDSFSGVSLFSLST 604 (844)
T ss_dssp CSSSCSCCTTTCCC
T ss_pred chhhCCCccccCcc
Confidence 88877766554433
No 7
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=1.5e-56 Score=519.80 Aligned_cols=511 Identities=17% Similarity=0.234 Sum_probs=293.3
Q ss_pred CCHHHHHHHHHhhhcCcCCCC--------CCCCCCCCCCCCCCCcc---cceEecCCCCcEEEEECCCCCCCCCCcceec
Q 048006 11 CIDEEREALLTFKASLVDESG--------VLSSWGPEDEKRDCCKW---TGLRCSNKTNHVILLDLQPIDFDSFPLRGTI 79 (833)
Q Consensus 11 ~~~~~~~~ll~~k~~~~~~~~--------~~~~w~~~~~~~~~c~w---~gv~c~~~~~~v~~l~L~~~~~~~~~l~~~~ 79 (833)
....|+.||.++|+++.++.. ..++|. .+++||.| .||+|+.. |||++|+|++ +.++|.+
T Consensus 27 ~~~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~---~~~~~c~w~~~~GV~C~~~-~~V~~L~L~~-----~~l~g~l 97 (636)
T 4eco_A 27 EYIKDYLALKEIWDALNGKNWSQQGFGTQPGANWN---FNKELDMWGAQPGVSLNSN-GRVTGLSLEG-----FGASGRV 97 (636)
T ss_dssp HHHHHHHHHHHHHHHTTGGGCCCCC------CCCC---CSSCGGGTTCCTTEEECTT-CCEEEEECTT-----SCCEEEE
T ss_pred hHHHHHHHHHHHHHHcCCCCcccCCcCCccCCCCC---CCCCcccccCCCCeEEcCC-CCEEEEEecC-----cccCCcC
Confidence 345799999999999864432 345797 47899999 99999854 8999999999 7899999
Q ss_pred CccccCCCCCCEEeCCCCCCCCC-----------CccccccCCCCCCEEEccCCCCCCCCCcccCC-ccccceecccCcc
Q 048006 80 SPALLKLHDLRHLNLSFNDFSGS-----------PIPEFIGSLSKLRYLDLFGTVFAGPIPPQLGN-LSRLQHLDLGSNY 147 (833)
Q Consensus 80 ~~~l~~l~~L~~L~Ls~n~~~~~-----------~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~-l~~L~~L~Ls~n~ 147 (833)
|++++++++|++|+|++|.+... .+|... +.+|+ +++++|.+.+.+|..+.. +.++..+++....
T Consensus 98 p~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~--~~~l~-l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~ 174 (636)
T 4eco_A 98 PDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ--KQKMR-MHYQKTFVDYDPREDFSDLIKDCINSDPQQKS 174 (636)
T ss_dssp CGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH--HHHHH-THHHHHHTCCCGGGGSCHHHHHHHHHCTTSCC
T ss_pred ChHHhcCccceEEECcCCccccCCccccccccccCchHHH--HHHHH-hhHHHhhhccCchhhHHHHHHHHhhcCccccc
Confidence 99999999999999999976311 122222 23334 444444444444433331 1222222222111
Q ss_pred CCCCCCcccccCCCCCcEEecCCCCCCCCchhHHhhcCCCCCCEEEccCCCCCCCCCccccccccCCCCCEEEc--cCCc
Q 048006 148 LFSTGNLDWLSHLSYLRYLNLDESNLANSSDWFQVIGKLHSLKTLSLHSCYLPPVIPLSLNHLNSSTSLETLVL--SDNN 225 (833)
Q Consensus 148 ~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~L--s~n~ 225 (833)
+. . . .. ..++.+.+ ..|+
T Consensus 175 ~~-------------------------~--------------------------~--------~~-~~l~~l~l~~~~n~ 194 (636)
T 4eco_A 175 IK-------------------------K--------------------------S--------SR-ITLKDTQIGQLSNN 194 (636)
T ss_dssp CC-------------------------C--------------------------C--------CC-CCCCTTTTTCCSCE
T ss_pred cc-------------------------c--------------------------c--------cc-cchhhhhhccccCC
Confidence 10 0 0 00 11111111 2456
Q ss_pred CCCCCCCcccccccCCcEEEccCcccccc-----------------cccccc--CCCCCcEEECcCCcccccccccccCC
Q 048006 226 LTSSIYPWLPNISSIFISIDLGFNQLQGS-----------------IPESFQ--HMVYLEHLRLSFNELEGGIPKFFGNM 286 (833)
Q Consensus 226 l~~~~~~~l~~l~~~L~~L~Ls~n~l~~~-----------------~p~~~~--~l~~L~~L~L~~n~l~~~~p~~l~~l 286 (833)
+++ +|+.++++++ |++|+|++|.+++. +|+.++ ++++|++|++++|++.+.+|..|+++
T Consensus 195 l~~-ip~~l~~l~~-L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l 272 (636)
T 4eco_A 195 ITF-VSKAVMRLTK-LRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKAL 272 (636)
T ss_dssp EEE-ECGGGGGCTT-CCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTC
T ss_pred Ccc-CCHHHhcccC-CCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcC
Confidence 666 6666777776 77777777777764 888888 99999999999999999999999999
Q ss_pred CCCcEEEccCCC-CCc-hhhHHHhhcCCccccCCccEEEcccccccccCh-hhhcCCCCCCEEECcCCccccccCCCccC
Q 048006 287 CSLITLNLSNNK-LSG-QLSEIIQNLSSGCLENSLKSLYLENSLTGVISE-SFFSNISNLKELHLANNPLVLKLSHDWVP 363 (833)
Q Consensus 287 ~~L~~L~Ls~n~-l~~-~~~~~l~~l~~~~~~~~L~~L~L~~~~~~~i~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 363 (833)
++|++|++++|+ +++ .+|..++.+.......+|++|++++|.+..+|. ..|.++++|++|++++|.+.+
T Consensus 273 ~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g-------- 344 (636)
T 4eco_A 273 PEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEG-------- 344 (636)
T ss_dssp SSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEE--------
T ss_pred CCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCcc--------
Confidence 999999999998 888 888888776200000044444443333333333 123344444444444443332
Q ss_pred CccccEEEccCccCCCCCChhhcccccccEEeecCCccccccchhHHhhcccccEEEcccccccccCCccccccCCCCCc
Q 048006 364 PFQLIIISLSSCKIGPHFPKWLQTQNQIELLDISNTGISDTIPDWFWNLSNKFSFLDLASNQIKGKLPNLSSRFGTSNPG 443 (833)
Q Consensus 364 ~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~~l~~ 443 (833)
.+| .+..+++|++|++++|+++ .+|..+..+
T Consensus 345 ----------------~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l------------------------------- 375 (636)
T 4eco_A 345 ----------------KLP-AFGSEIKLASLNLAYNQIT-EIPANFCGF------------------------------- 375 (636)
T ss_dssp ----------------ECC-CCEEEEEESEEECCSSEEE-ECCTTSEEE-------------------------------
T ss_pred ----------------chh-hhCCCCCCCEEECCCCccc-cccHhhhhh-------------------------------
Confidence 223 3333333444444443333 222222111
Q ss_pred eecccCcccccCCCCCCCCceeecCCCcccccccccccccCCc-ccEEEcCCCcCcCCCCCcccCCC--CCcEEEccCCc
Q 048006 444 IDISSNHFEGLIPPLPSNSSFLNLSKNRFSGSISFLCSISGSK-LTYVDLSSNLLSGKLPDCWWTFD--SLVILNLENNS 520 (833)
Q Consensus 444 l~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~-L~~L~ls~n~l~~~~~~~~~~l~--~L~~L~Ls~N~ 520 (833)
++ |++|++++|.++ .+|..+..++ +|++|++++|.
T Consensus 376 -----------------------------------------~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~ 413 (636)
T 4eco_A 376 -----------------------------------------TEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNE 413 (636)
T ss_dssp -----------------------------------------CTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSC
T ss_pred -----------------------------------------cccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCc
Confidence 22 444444444444 3333333322 44444444444
Q ss_pred ccccCCCCcc-------CcCCccEEEcccCcCccccCccccCCCCCcEeccCCCccCCCCCcchhhcCCccceEEecCCc
Q 048006 521 FSGRIPDSMG-------FLQNIQTLSLHNNRLTGELSSSFRNCSQLRLLDLGKNALYGEIPTWMGESLSNLIVLSLKSNK 593 (833)
Q Consensus 521 l~~~~~~~~~-------~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~N~ 593 (833)
+++.+|..+. .+++|++|++++|+++...+..+..+++|++|++++|+++ .+|...+....
T Consensus 414 l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~----------- 481 (636)
T 4eco_A 414 IGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDEN----------- 481 (636)
T ss_dssp TTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETT-----------
T ss_pred CCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC-CcCHHHhcccc-----------
Confidence 4444444444 4445555555555555333333444555666666666655 55554432211
Q ss_pred ccccccccccCCCCCCEEeccCCcCcccCCcccc--ccccccccCCCCcccccceEEeeccCcchhccccCcccEEEccC
Q 048006 594 FHGKIPFQLCQLAFLQVLDLSLNNISGKIPKCFN--NFTAMTQERSSDPTIKDKLMLTWKGSEREYRSTLGLVKSLELSN 671 (833)
Q Consensus 594 l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~--~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~ 671 (833)
..+.++++|+.|++++|+++ .+|..+. .+++| +.|+|++
T Consensus 482 ------~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L--------------------------------~~L~Ls~ 522 (636)
T 4eco_A 482 ------ENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYL--------------------------------VGIDLSY 522 (636)
T ss_dssp ------EECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTC--------------------------------CEEECCS
T ss_pred ------ccccccCCccEEECcCCcCC-ccChhhhhccCCCc--------------------------------CEEECCC
Confidence 00111224444444444444 3333332 33322 4455555
Q ss_pred CcCCCCCchhhhcccCCcEEEC------CCccccccCCcccCCCCCCCEEeCCCCcCcccCCccccCCCCCCEEECcCCc
Q 048006 672 NNLNGAVPEEIMDLVGLVALNL------SKNHLTGQISPKIGQLKSLDFLDLSRNQLVGGIPSSLSQLSGLSVMDLSYNN 745 (833)
Q Consensus 672 n~l~~~~p~~l~~l~~L~~L~L------s~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~ 745 (833)
|++++ +|..+..+++|++|+| ++|++.+.+|..+.++++|++|+|++|++ +.+|..+. ++|+.||+++|+
T Consensus 523 N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~--~~L~~L~Ls~N~ 598 (636)
T 4eco_A 523 NSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT--PNISVLDIKDNP 598 (636)
T ss_dssp SCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--TTCCEEECCSCT
T ss_pred CCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHh--CcCCEEECcCCC
Confidence 55543 4445555555555555 66778888888888888888888888888 57777765 788999999998
Q ss_pred CccC
Q 048006 746 LSGK 749 (833)
Q Consensus 746 l~g~ 749 (833)
+...
T Consensus 599 l~~~ 602 (636)
T 4eco_A 599 NISI 602 (636)
T ss_dssp TCEE
T ss_pred Cccc
Confidence 7653
No 8
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=2.1e-54 Score=503.00 Aligned_cols=570 Identities=21% Similarity=0.161 Sum_probs=368.8
Q ss_pred EEECCCCCCCCCCcceecCccccCCCCCCEEeCCCCCCCCCCccccccCCCCCCEEEccCCCCCCCCCcccCCcccccee
Q 048006 62 LLDLQPIDFDSFPLRGTISPALLKLHDLRHLNLSFNDFSGSPIPEFIGSLSKLRYLDLFGTVFAGPIPPQLGNLSRLQHL 141 (833)
Q Consensus 62 ~l~L~~~~~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L 141 (833)
.++.++ ..++ .+|..+. +++++|+|++|.+++. .+..|.++++|++|+|++|.+.+..|..|.++++|++|
T Consensus 15 ~~~c~~-----~~l~-~ip~~~~--~~l~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L 85 (606)
T 3vq2_A 15 TYQCMD-----QKLS-KVPDDIP--SSTKNIDLSFNPLKIL-KSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNL 85 (606)
T ss_dssp EEECTT-----SCCS-SCCTTSC--TTCCEEECTTSCCCEE-CTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEE
T ss_pred ceEccC-----CCcc-cCCCCCC--CCcCEEECCCCCcCEe-ChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEe
Confidence 356666 3443 3444443 6888999999988864 55688888999999999998887778888888888888
Q ss_pred cccCccCCCCCCcccccCCCCCcEEecCCCCCCCCchhHHhhcCCCCCCEEEccCCCCCC-CCCccccccccCCCCCEEE
Q 048006 142 DLGSNYLFSTGNLDWLSHLSYLRYLNLDESNLANSSDWFQVIGKLHSLKTLSLHSCYLPP-VIPLSLNHLNSSTSLETLV 220 (833)
Q Consensus 142 ~Ls~n~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~-~~~~~~~~~~~~~~L~~L~ 220 (833)
+|++|.+.. ..+..++++++|++|++++|.+++.+. ..++++++|++|++++|.+.+ .+|. .+... ++|++|+
T Consensus 86 ~Ls~n~l~~-~~p~~~~~l~~L~~L~L~~n~l~~~~~--~~~~~l~~L~~L~L~~n~l~~~~lp~--~~~~l-~~L~~L~ 159 (606)
T 3vq2_A 86 ILTGNPIQS-FSPGSFSGLTSLENLVAVETKLASLES--FPIGQLITLKKLNVAHNFIHSCKLPA--YFSNL-TNLVHVD 159 (606)
T ss_dssp ECTTCCCCC-CCTTSSTTCTTCCEEECTTSCCCCSSS--SCCTTCTTCCEEECCSSCCCCCCCCG--GGGTC-TTCCEEE
T ss_pred ECCCCcccc-cChhhcCCcccCCEEEccCCccccccc--cccCCCCCCCEEeCCCCcccceechH--hHhhc-CCCCEEE
Confidence 888888764 334566777777777777777665421 235556666666666665544 2343 22222 5555555
Q ss_pred ccCCcCCCCCCCcccccccCCcEEEccCccccccccccccCCCCCcEEECcCCcccccccccccCCCCCcEEEccCCCCC
Q 048006 221 LSDNNLTSSIYPWLPNISSIFISIDLGFNQLQGSIPESFQHMVYLEHLRLSFNELEGGIPKFFGNMCSLITLNLSNNKLS 300 (833)
Q Consensus 221 Ls~n~l~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~ 300 (833)
+++|++++..+..+..+.+ ++. .+++|++++|.+++..+..+... +|++|++++|.++
T Consensus 160 Ls~n~l~~~~~~~~~~l~~-L~~--------------------~l~~L~l~~n~l~~~~~~~~~~~-~L~~L~L~~n~~~ 217 (606)
T 3vq2_A 160 LSYNYIQTITVNDLQFLRE-NPQ--------------------VNLSLDMSLNPIDFIQDQAFQGI-KLHELTLRGNFNS 217 (606)
T ss_dssp CCSSCCCEECTTTTHHHHH-CTT--------------------CCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSC
T ss_pred ccCCcceecChhhhhhhhc-ccc--------------------ccceeeccCCCcceeCcccccCc-eeeeeeccCCccc
Confidence 5555554444444433332 210 02255555555554433333333 5666666666554
Q ss_pred -chhhHHHhhcCCccccCCccEEEcccccc------cccChhhhcCCCCCCEEECcCCccccccCCCccCCccccEEEc-
Q 048006 301 -GQLSEIIQNLSSGCLENSLKSLYLENSLT------GVISESFFSNISNLKELHLANNPLVLKLSHDWVPPFQLIIISL- 372 (833)
Q Consensus 301 -~~~~~~l~~l~~~~~~~~L~~L~L~~~~~------~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L- 372 (833)
+..|..+.+++ .++.+++..+.. ..++...+..+.. . .++.+++
T Consensus 218 ~~~~~~~~~~l~------~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~---------------------l-~l~~l~l~ 269 (606)
T 3vq2_A 218 SNIMKTCLQNLA------GLHVHRLILGEFKDERNLEIFEPSIMEGLCD---------------------V-TIDEFRLT 269 (606)
T ss_dssp HHHHHHHHHTTT------TCEEEEEEEECCTTSCCCSCCCGGGGTTGGG---------------------S-EEEEEEEC
T ss_pred hhHHHHHhcccc------ccccccccccccccCCcccccChHHhhhhhh---------------------c-cHhheecc
Confidence 34445555555 455544411111 1111111111111 1 3444444
Q ss_pred cCccCCCCCChhhcccccccEEeecCCccccccchhHHhhcccccEEEcccccccccCCccccccCCCCCceecccCccc
Q 048006 373 SSCKIGPHFPKWLQTQNQIELLDISNTGISDTIPDWFWNLSNKFSFLDLASNQIKGKLPNLSSRFGTSNPGIDISSNHFE 452 (833)
Q Consensus 373 ~~~~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~~l~~l~l~~n~l~ 452 (833)
..+.+.+..|. +..+++|+.|++++|.+.. +| .+... ++|++|++++|.+ +.+|..
T Consensus 270 ~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~-l~-~l~~~-~~L~~L~l~~n~l-~~lp~~------------------- 325 (606)
T 3vq2_A 270 YTNDFSDDIVK-FHCLANVSAMSLAGVSIKY-LE-DVPKH-FKWQSLSIIRCQL-KQFPTL------------------- 325 (606)
T ss_dssp CCTTCCGGGGS-CGGGTTCSEEEEESCCCCC-CC-CCCTT-CCCSEEEEESCCC-SSCCCC-------------------
T ss_pred ccccccccccc-cccCCCCCEEEecCccchh-hh-hcccc-ccCCEEEcccccC-cccccC-------------------
Confidence 34445545554 6666667777777666643 22 22222 2445555555444 222211
Q ss_pred ccCCCCCCCCceeecCCCcccccccccccccCCcccEEEcCCCcCcCCCCCcccCCCCCcEEEccCCccccc--CCCCcc
Q 048006 453 GLIPPLPSNSSFLNLSKNRFSGSISFLCSISGSKLTYVDLSSNLLSGKLPDCWWTFDSLVILNLENNSFSGR--IPDSMG 530 (833)
Q Consensus 453 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~--~~~~~~ 530 (833)
.+++|++|++++|...+.. .+..+++|++|++++|.+++. .+..+.
T Consensus 326 ------------------------------~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~ 373 (606)
T 3vq2_A 326 ------------------------------DLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDL 373 (606)
T ss_dssp ------------------------------CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHH
T ss_pred ------------------------------CCCccceeeccCCcCccch--hhccCCCCCEEECcCCccCCCcchhhhhc
Confidence 1366777777777544333 456778888888888888765 366778
Q ss_pred CcCCccEEEcccCcCccccCccccCCCCCcEeccCCCccCCCCCcchhhcCCccceEEecCCcccccccccccCCCCCCE
Q 048006 531 FLQNIQTLSLHNNRLTGELSSSFRNCSQLRLLDLGKNALYGEIPTWMGESLSNLIVLSLKSNKFHGKIPFQLCQLAFLQV 610 (833)
Q Consensus 531 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~ 610 (833)
.+++|++|++++|.+++ +|..+..+++|++|++++|++.+..|...+..+++|++|++++|.+.+..|..+..+++|++
T Consensus 374 ~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 452 (606)
T 3vq2_A 374 GTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNT 452 (606)
T ss_dssp CCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCE
T ss_pred cCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCE
Confidence 88888888888888875 55778888899999999998886666333446889999999999998888888999999999
Q ss_pred EeccCCcCcc-cCCccccccccccccCCCCcccccceEEeeccCcchhccccCcccEEEccCCcCCCCCchhhhcccCCc
Q 048006 611 LDLSLNNISG-KIPKCFNNFTAMTQERSSDPTIKDKLMLTWKGSEREYRSTLGLVKSLELSNNNLNGAVPEEIMDLVGLV 689 (833)
Q Consensus 611 L~Ls~N~l~~-~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~ 689 (833)
|++++|++.+ .+|..|..+++| +.|++++|++++..|..+..+++|+
T Consensus 453 L~l~~n~l~~~~~~~~~~~l~~L--------------------------------~~L~Ls~n~l~~~~~~~~~~l~~L~ 500 (606)
T 3vq2_A 453 LKMAGNSFKDNTLSNVFANTTNL--------------------------------TFLDLSKCQLEQISWGVFDTLHRLQ 500 (606)
T ss_dssp EECTTCEEGGGEECSCCTTCTTC--------------------------------CEEECTTSCCCEECTTTTTTCTTCC
T ss_pred EECCCCcCCCcchHHhhccCCCC--------------------------------CEEECCCCcCCccChhhhcccccCC
Confidence 9999999987 467777777666 8999999999988899999999999
Q ss_pred EEECCCccccccCCcccCCCCCCCEEeCCCCcCcccCCccccCCC-CCCEEECcCCcCccCCCCccccCccccccccCCC
Q 048006 690 ALNLSKNHLTGQISPKIGQLKSLDFLDLSRNQLVGGIPSSLSQLS-GLSVMDLSYNNLSGKIPTVTQLQSFNDTVYAGNP 768 (833)
Q Consensus 690 ~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~-~L~~L~ls~N~l~g~ip~~~~~~~l~~~~~~gn~ 768 (833)
+|+|++|++++.+|..|.++++|+.|+|++|+++ .+|..+..++ +|++|++++|++.|.++..+...++.. ++
T Consensus 501 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~~~~~~~~l~~-----~~ 574 (606)
T 3vq2_A 501 LLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICEHQKFLQWVKE-----QK 574 (606)
T ss_dssp EEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSSTTHHHHTTTTT-----SS
T ss_pred EEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccCCccHHHHHHHHc-----Cc
Confidence 9999999999999999999999999999999999 6777788887 699999999999999887544444432 21
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCc
Q 048006 769 ELCGLPLPNKCRDEESAAGPGIT 791 (833)
Q Consensus 769 ~lc~~~~~~~c~~~~~~~~~~~~ 791 (833)
..........|..|+..++....
T Consensus 575 ~~~~~~~~~~C~~p~~~~~~~l~ 597 (606)
T 3vq2_A 575 QFLVNVEQMTCATPVEMNTSLVL 597 (606)
T ss_dssp SSBSSGGGCCCC-----------
T ss_pred ccccCCccceeCCChHhCCCEee
Confidence 22211223578877777665554
No 9
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=7.9e-54 Score=498.18 Aligned_cols=538 Identities=20% Similarity=0.198 Sum_probs=399.6
Q ss_pred CEEeCCCCCCCCCCccccccCCCCCCEEEccCCCCCCCCCcccCCccccceecccCccCCCCCCcccccCCCCCcEEecC
Q 048006 90 RHLNLSFNDFSGSPIPEFIGSLSKLRYLDLFGTVFAGPIPPQLGNLSRLQHLDLGSNYLFSTGNLDWLSHLSYLRYLNLD 169 (833)
Q Consensus 90 ~~L~Ls~n~~~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~Ls 169 (833)
+.++.++..++ .+|..+. .++++|+|++|.+++..|..|+++++|++|++++|.+.. ..+..|+++++|++|+++
T Consensus 15 ~~~~c~~~~l~--~iP~~l~--~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~-~~~~~~~~l~~L~~L~Ls 89 (606)
T 3t6q_A 15 KTYNCENLGLN--EIPGTLP--NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYW-IHEDTFQSQHRLDTLVLT 89 (606)
T ss_dssp TEEECTTSCCS--SCCTTSC--TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCE-ECTTTTTTCTTCCEEECT
T ss_pred ceEECCCCCcc--cCcCCCC--CcCcEEEccCCccCcCChhHhccCccceEEECCCCccce-eChhhccCccccCeeeCC
Confidence 46888888887 4777665 478999999999988778888888888888888887753 223334444444444444
Q ss_pred CCCCCCCchhHHhhcCCCCCCEEEccCCCCCCCCCccccccccCCCCCEEEccCCcCCCCCCCcccccccCCcEEEccCc
Q 048006 170 ESNLANSSDWFQVIGKLHSLKTLSLHSCYLPPVIPLSLNHLNSSTSLETLVLSDNNLTSSIYPWLPNISSIFISIDLGFN 249 (833)
Q Consensus 170 ~n~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~~L~~L~Ls~n 249 (833)
+|.+ .+..|. .+.. +++|++|++++|++++..+..+..+++ |++|++++|
T Consensus 90 ~n~l--------------------------~~~~~~--~~~~-l~~L~~L~L~~n~i~~l~~~~~~~l~~-L~~L~L~~n 139 (606)
T 3t6q_A 90 ANPL--------------------------IFMAET--ALSG-PKALKHLFFIQTGISSIDFIPLHNQKT-LESLYLGSN 139 (606)
T ss_dssp TCCC--------------------------SEECTT--TTSS-CTTCCEEECTTSCCSCGGGSCCTTCTT-CCEEECCSS
T ss_pred CCcc--------------------------cccChh--hhcc-cccccEeeccccCcccCCcchhccCCc-ccEEECCCC
Confidence 4444 333332 1122 255555555555555444444555556 777777777
Q ss_pred cccccccccccCCCCCcEEECcCCcccccccccccCCCCCc--EEEccCCCCCchhhHHHhhcCCccccCCccEEEcccc
Q 048006 250 QLQGSIPESFQHMVYLEHLRLSFNELEGGIPKFFGNMCSLI--TLNLSNNKLSGQLSEIIQNLSSGCLENSLKSLYLENS 327 (833)
Q Consensus 250 ~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~--~L~Ls~n~l~~~~~~~l~~l~~~~~~~~L~~L~L~~~ 327 (833)
.+++..+..+..+++|++|++++|.+++..|..|+.+++|+ +|++++|.+++..|..+.. . +|+.|++.++
T Consensus 140 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~-~------~L~~L~l~~~ 212 (606)
T 3t6q_A 140 HISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDS-A------VFQSLNFGGT 212 (606)
T ss_dssp CCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTT-C------EEEEEECTTC
T ss_pred cccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCccChhHhhh-c------cccccccCCc
Confidence 77764434444577777777777777776667777777777 7777777777666654433 2 4666666333
Q ss_pred cccccChhhhcCCCCCCEEECcCCccccccCCCccCCccccEEEccCccCCCCCChhhcccc--cccEEeecCCcccccc
Q 048006 328 LTGVISESFFSNISNLKELHLANNPLVLKLSHDWVPPFQLIIISLSSCKIGPHFPKWLQTQN--QIELLDISNTGISDTI 405 (833)
Q Consensus 328 ~~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~l~--~L~~L~Ls~n~i~~~~ 405 (833)
. .++. .+..+.+++...+....+.. .......+..+..+. +|+.|++++|.+++..
T Consensus 213 ~--~~~~-~~~~l~~~~l~~l~~~~~~~-------------------~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~ 270 (606)
T 3t6q_A 213 Q--NLLV-IFKGLKNSTIQSLWLGTFED-------------------MDDEDISPAVFEGLCEMSVESINLQKHYFFNIS 270 (606)
T ss_dssp S--CHHH-HHHHTTTCEEEEEECCCCTT-------------------SCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCC
T ss_pred h--hHHH-Hhhhccccchhheechhhcc-------------------ccccccChhHhchhhcCceeEEEeecCccCccC
Confidence 2 1111 23333333332222211110 111112234444444 7999999999999877
Q ss_pred chhHHhhcccccEEEcccccccccCCccccccCCCCCceecccCcccccCCCCCCCCceeecCCCcccccccccccccCC
Q 048006 406 PDWFWNLSNKFSFLDLASNQIKGKLPNLSSRFGTSNPGIDISSNHFEGLIPPLPSNSSFLNLSKNRFSGSISFLCSISGS 485 (833)
Q Consensus 406 ~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~ 485 (833)
+..|..+ ++|++|++++|.++ .+|... ..++
T Consensus 271 ~~~~~~l-~~L~~L~l~~n~l~-~lp~~l-----------------------------------------------~~l~ 301 (606)
T 3t6q_A 271 SNTFHCF-SGLQELDLTATHLS-ELPSGL-----------------------------------------------VGLS 301 (606)
T ss_dssp TTTTTTC-TTCSEEECTTSCCS-CCCSSC-----------------------------------------------CSCT
T ss_pred HHHhccc-cCCCEEeccCCccC-CCChhh-----------------------------------------------cccc
Confidence 7777655 47888888888776 233210 0147
Q ss_pred cccEEEcCCCcCcCCCCCcccCCCCCcEEEccCCcccccCCC-CccCcCCccEEEcccCcCcccc--CccccCCCCCcEe
Q 048006 486 KLTYVDLSSNLLSGKLPDCWWTFDSLVILNLENNSFSGRIPD-SMGFLQNIQTLSLHNNRLTGEL--SSSFRNCSQLRLL 562 (833)
Q Consensus 486 ~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L 562 (833)
+|++|++++|.+++..|..+..+++|++|++++|.+.+.++. .+..+++|++|++++|.+++.. +..+..+++|++|
T Consensus 302 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L 381 (606)
T 3t6q_A 302 TLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSL 381 (606)
T ss_dssp TCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEE
T ss_pred cCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEE
Confidence 899999999999988888999999999999999999866655 4899999999999999999776 7889999999999
Q ss_pred ccCCCccCCCCCcchhhcCCccceEEecCCccccccccc-ccCCCCCCEEeccCCcCcccCCccccccccccccCCCCcc
Q 048006 563 DLGKNALYGEIPTWMGESLSNLIVLSLKSNKFHGKIPFQ-LCQLAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPT 641 (833)
Q Consensus 563 ~L~~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~~~~-l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~ 641 (833)
++++|++.+..|..+. .+++|++|++++|++.+..+.. +..+++|++|++++|.+.+..|..+..+++|
T Consensus 382 ~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L--------- 451 (606)
T 3t6q_A 382 NLSYNEPLSLKTEAFK-ECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPAL--------- 451 (606)
T ss_dssp ECCSCSCEEECTTTTT-TCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTC---------
T ss_pred ECCCCcCCcCCHHHhc-CCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCC---------
Confidence 9999999866666665 6999999999999999776654 8899999999999999998888888777766
Q ss_pred cccceEEeeccCcchhccccCcccEEEccCCcCCCC---CchhhhcccCCcEEECCCccccccCCcccCCCCCCCEEeCC
Q 048006 642 IKDKLMLTWKGSEREYRSTLGLVKSLELSNNNLNGA---VPEEIMDLVGLVALNLSKNHLTGQISPKIGQLKSLDFLDLS 718 (833)
Q Consensus 642 ~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~---~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls 718 (833)
++|++++|++++. .+..+..+++|++|++++|++++..|..|+.+++|+.|+|+
T Consensus 452 -----------------------~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls 508 (606)
T 3t6q_A 452 -----------------------QHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLS 508 (606)
T ss_dssp -----------------------CEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECC
T ss_pred -----------------------CEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECC
Confidence 9999999999863 33678999999999999999999999999999999999999
Q ss_pred CCcCcccCCccccCCCCCCEEECcCCcCccCCCCc-cccCccccccccCCCCCCCCC
Q 048006 719 RNQLVGGIPSSLSQLSGLSVMDLSYNNLSGKIPTV-TQLQSFNDTVYAGNPELCGLP 774 (833)
Q Consensus 719 ~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~-~~~~~l~~~~~~gn~~lc~~~ 774 (833)
+|++++.+|..+.+++.| +|++++|++++.+|.. ..+..+..+++.|||+.|+|+
T Consensus 509 ~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 564 (606)
T 3t6q_A 509 HNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCS 564 (606)
T ss_dssp SSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGG
T ss_pred CCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCC
Confidence 999999999999999999 9999999999888864 556778888999999999886
No 10
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=1.7e-52 Score=486.91 Aligned_cols=534 Identities=19% Similarity=0.164 Sum_probs=377.5
Q ss_pred cceecccCccCCCCCCcccccCCCCCcEEecCCCCCCCCchhHHhhcCCCCCCEEEccCCCCCCCCCccccccccCCCCC
Q 048006 138 LQHLDLGSNYLFSTGNLDWLSHLSYLRYLNLDESNLANSSDWFQVIGKLHSLKTLSLHSCYLPPVIPLSLNHLNSSTSLE 217 (833)
Q Consensus 138 L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~ 217 (833)
-++++.+++.+... +..+. +++++|++++|.++++ .+..++++++|++|++++|.+.+..|. .+.. +++|+
T Consensus 13 ~~~~~c~~~~l~~i--p~~~~--~~l~~L~Ls~n~l~~~--~~~~~~~l~~L~~L~Ls~n~l~~i~~~--~~~~-l~~L~ 83 (606)
T 3vq2_A 13 NITYQCMDQKLSKV--PDDIP--SSTKNIDLSFNPLKIL--KSYSFSNFSELQWLDLSRCEIETIEDK--AWHG-LHHLS 83 (606)
T ss_dssp TTEEECTTSCCSSC--CTTSC--TTCCEEECTTSCCCEE--CTTTTTTCTTCCEEECTTCCCCEECTT--TTTT-CTTCC
T ss_pred CCceEccCCCcccC--CCCCC--CCcCEEECCCCCcCEe--ChhhccCCccCcEEeCCCCcccccCHH--Hhhc-hhhcC
Confidence 35677777776532 22222 6777777777777664 224567777777777777777666554 2223 37777
Q ss_pred EEEccCCcCCCCCCCcccccccCCcEEEccCccccccccccccCCCCCcEEECcCCcccc-cccccccCCCCCcEEEccC
Q 048006 218 TLVLSDNNLTSSIYPWLPNISSIFISIDLGFNQLQGSIPESFQHMVYLEHLRLSFNELEG-GIPKFFGNMCSLITLNLSN 296 (833)
Q Consensus 218 ~L~Ls~n~l~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~Ls~ 296 (833)
+|++++|.+++..|..+.++++ |++|++++|.+++..+..++++++|++|++++|.+++ .+|..|+++++|++|++++
T Consensus 84 ~L~Ls~n~l~~~~p~~~~~l~~-L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~ 162 (606)
T 3vq2_A 84 NLILTGNPIQSFSPGSFSGLTS-LENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSY 162 (606)
T ss_dssp EEECTTCCCCCCCTTSSTTCTT-CCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCS
T ss_pred EeECCCCcccccChhhcCCccc-CCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccC
Confidence 7777777777766777777777 7777777777776666667777777777777777765 4566777777777777777
Q ss_pred CCCCchhhHHHhhcCCccccCCccEEEcccccccccChhhhcCCCCCCEEECcCCccccccCCCccCCccccEEEccCcc
Q 048006 297 NKLSGQLSEIIQNLSSGCLENSLKSLYLENSLTGVISESFFSNISNLKELHLANNPLVLKLSHDWVPPFQLIIISLSSCK 376 (833)
Q Consensus 297 n~l~~~~~~~l~~l~~~~~~~~L~~L~L~~~~~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~~~ 376 (833)
|++++..+..++.+. +|+. .+++|++++|.+....+..+... +|++|++++|.
T Consensus 163 n~l~~~~~~~~~~l~------~L~~--------------------~l~~L~l~~n~l~~~~~~~~~~~-~L~~L~L~~n~ 215 (606)
T 3vq2_A 163 NYIQTITVNDLQFLR------ENPQ--------------------VNLSLDMSLNPIDFIQDQAFQGI-KLHELTLRGNF 215 (606)
T ss_dssp SCCCEECTTTTHHHH------HCTT--------------------CCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCC
T ss_pred CcceecChhhhhhhh------cccc--------------------ccceeeccCCCcceeCcccccCc-eeeeeeccCCc
Confidence 777766555554443 2210 12244555554444333333332 45555555554
Q ss_pred CC-CCCChhhcccccccEEeecCCccccc---------cchhHHhhcccccEEEc-ccccccccCCccccccCCCCCcee
Q 048006 377 IG-PHFPKWLQTQNQIELLDISNTGISDT---------IPDWFWNLSNKFSFLDL-ASNQIKGKLPNLSSRFGTSNPGID 445 (833)
Q Consensus 377 l~-~~~~~~l~~l~~L~~L~Ls~n~i~~~---------~~~~~~~~~~~L~~L~L-~~n~l~~~~p~~~~~~~~~l~~l~ 445 (833)
+. +..|.++..++.++.+++..+.+.+. .+..+... .++.+++ ..|.+.+.+|. ...+
T Consensus 216 ~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l--~l~~l~l~~~~~~~~~~~~--~~~l------- 284 (606)
T 3vq2_A 216 NSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDV--TIDEFRLTYTNDFSDDIVK--FHCL------- 284 (606)
T ss_dssp SCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGS--EEEEEEECCCTTCCGGGGS--CGGG-------
T ss_pred cchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhc--cHhheeccccccccccccc--cccC-------
Confidence 43 23455555666666555543332211 11111111 2444444 44444444443 1223
Q ss_pred cccCcccccCCCCCCCCceeecCCCcccccccccccccCCcccEEEcCCCcCcCCCCCcccCCCCCcEEEccCCcccccC
Q 048006 446 ISSNHFEGLIPPLPSNSSFLNLSKNRFSGSISFLCSISGSKLTYVDLSSNLLSGKLPDCWWTFDSLVILNLENNSFSGRI 525 (833)
Q Consensus 446 l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 525 (833)
++++.|++++|.+... +. ...+++|++|++++|.+ +.+| .+ .+++|++|++++|...+..
T Consensus 285 --------------~~L~~L~l~~~~~~~l-~~--l~~~~~L~~L~l~~n~l-~~lp-~~-~l~~L~~L~l~~n~~~~~~ 344 (606)
T 3vq2_A 285 --------------ANVSAMSLAGVSIKYL-ED--VPKHFKWQSLSIIRCQL-KQFP-TL-DLPFLKSLTLTMNKGSISF 344 (606)
T ss_dssp --------------TTCSEEEEESCCCCCC-CC--CCTTCCCSEEEEESCCC-SSCC-CC-CCSSCCEEEEESCSSCEEC
T ss_pred --------------CCCCEEEecCccchhh-hh--ccccccCCEEEcccccC-cccc-cC-CCCccceeeccCCcCccch
Confidence 3444444444444322 21 11257899999999999 5777 45 8999999999999666544
Q ss_pred CCCccCcCCccEEEcccCcCccc--cCccccCCCCCcEeccCCCccCCCCCcchhhcCCccceEEecCCccccccc-ccc
Q 048006 526 PDSMGFLQNIQTLSLHNNRLTGE--LSSSFRNCSQLRLLDLGKNALYGEIPTWMGESLSNLIVLSLKSNKFHGKIP-FQL 602 (833)
Q Consensus 526 ~~~~~~l~~L~~L~L~~n~l~~~--~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~~-~~l 602 (833)
.+..+++|++|++++|++++. .+..+..+++|++|++++|.+. .+|..+. .+++|++|++++|++.+..| ..+
T Consensus 345 --~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~-~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~ 420 (606)
T 3vq2_A 345 --KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI-IMSANFM-GLEELQHLDFQHSTLKRVTEFSAF 420 (606)
T ss_dssp --CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEE-EECCCCT-TCTTCCEEECTTSEEESTTTTTTT
T ss_pred --hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccc-cchhhcc-CCCCCCeeECCCCccCCccChhhh
Confidence 567899999999999999876 3888999999999999999988 5776665 68999999999999998877 688
Q ss_pred cCCCCCCEEeccCCcCcccCCccccccccccccCCCCcccccceEEeeccCcchhccccCcccEEEccCCcCCC-CCchh
Q 048006 603 CQLAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKDKLMLTWKGSEREYRSTLGLVKSLELSNNNLNG-AVPEE 681 (833)
Q Consensus 603 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~-~~p~~ 681 (833)
..+++|++|++++|++.+..|..+..+++| +.|++++|++++ .+|..
T Consensus 421 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L--------------------------------~~L~l~~n~l~~~~~~~~ 468 (606)
T 3vq2_A 421 LSLEKLLYLDISYTNTKIDFDGIFLGLTSL--------------------------------NTLKMAGNSFKDNTLSNV 468 (606)
T ss_dssp TTCTTCCEEECTTSCCEECCTTTTTTCTTC--------------------------------CEEECTTCEEGGGEECSC
T ss_pred hccccCCEEECcCCCCCccchhhhcCCCCC--------------------------------CEEECCCCcCCCcchHHh
Confidence 999999999999999998888888777766 999999999997 47888
Q ss_pred hhcccCCcEEECCCccccccCCcccCCCCCCCEEeCCCCcCcccCCccccCCCCCCEEECcCCcCccCCCCccccC-ccc
Q 048006 682 IMDLVGLVALNLSKNHLTGQISPKIGQLKSLDFLDLSRNQLVGGIPSSLSQLSGLSVMDLSYNNLSGKIPTVTQLQ-SFN 760 (833)
Q Consensus 682 l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~-~l~ 760 (833)
++.+++|++|+|++|++++..|..|+.+++|++|+|++|++++.+|..+..+++|++|++++|+++...+....+. .+.
T Consensus 469 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~p~~~~~l~~~L~ 548 (606)
T 3vq2_A 469 FANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLA 548 (606)
T ss_dssp CTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCCCEESCGGGSCTTCC
T ss_pred hccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCcccCHhHhhhcccCc
Confidence 9999999999999999999999999999999999999999999999999999999999999999995433334443 477
Q ss_pred cccccCCCCCCCCCC
Q 048006 761 DTVYAGNPELCGLPL 775 (833)
Q Consensus 761 ~~~~~gn~~lc~~~~ 775 (833)
.+.+.|||+.|+|+.
T Consensus 549 ~l~l~~N~~~c~c~~ 563 (606)
T 3vq2_A 549 FFNLTNNSVACICEH 563 (606)
T ss_dssp EEECCSCCCCCSSTT
T ss_pred EEEccCCCcccCCcc
Confidence 888999999999875
No 11
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=2.9e-52 Score=500.62 Aligned_cols=542 Identities=23% Similarity=0.227 Sum_probs=427.2
Q ss_pred CEEeCCCCCCCCCCccccccCCCCCCEEEccCCCCCCCCCcccCCccccceecccCccCCCCCCcccccCCCCCcEEecC
Q 048006 90 RHLNLSFNDFSGSPIPEFIGSLSKLRYLDLFGTVFAGPIPPQLGNLSRLQHLDLGSNYLFSTGNLDWLSHLSYLRYLNLD 169 (833)
Q Consensus 90 ~~L~Ls~n~~~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~Ls 169 (833)
+..|.++++++. +|. ..++|++|||++|.+++..|..|.++++|++|+|++|.......+..|+++++|++|+|+
T Consensus 7 ~~~dcs~~~L~~--vP~---lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls 81 (844)
T 3j0a_A 7 RIAFYRFCNLTQ--VPQ---VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLG 81 (844)
T ss_dssp EEEEESCCCSSC--CCS---SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECT
T ss_pred eEEEccCCCCCC--CCC---CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECC
Confidence 467888899984 676 468999999999999988899999999999999999965433345678999999999999
Q ss_pred CCCCCCCchhHHhhcCCCCCCEEEccCCCCCCCCCccccccccCCCCCEEEccCCcCCCCCC-CcccccccCCcEEEccC
Q 048006 170 ESNLANSSDWFQVIGKLHSLKTLSLHSCYLPPVIPLSLNHLNSSTSLETLVLSDNNLTSSIY-PWLPNISSIFISIDLGF 248 (833)
Q Consensus 170 ~n~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~-~~l~~l~~~L~~L~Ls~ 248 (833)
+|.+.+. .|..++++++|++|+|++|.+.+.+|.. ..+..+++|++|+|++|.+++..+ ..+.++++ |++|++++
T Consensus 82 ~N~l~~~--~p~~~~~l~~L~~L~Ls~n~l~~~~~~~-~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~-L~~L~Ls~ 157 (844)
T 3j0a_A 82 SSKIYFL--HPDAFQGLFHLFELRLYFCGLSDAVLKD-GYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNS-LKSIDFSS 157 (844)
T ss_dssp TCCCCEE--CTTSSCSCSSCCCEECTTCCCSSCCSTT-CCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSS-CCEEEEES
T ss_pred CCcCccc--CHhHccCCcccCEeeCcCCCCCcccccC-ccccccCCCCEEECCCCcccccccchhHhhCCC-CCEEECCC
Confidence 9998874 4678899999999999999998866542 123334889999999998887655 46788888 88888888
Q ss_pred ccccccccccccCC--CCCcEEECcCCcccccccccccCCCC------CcEEEccCCCCCchhhHHHhhcCCccccCCcc
Q 048006 249 NQLQGSIPESFQHM--VYLEHLRLSFNELEGGIPKFFGNMCS------LITLNLSNNKLSGQLSEIIQNLSSGCLENSLK 320 (833)
Q Consensus 249 n~l~~~~p~~~~~l--~~L~~L~L~~n~l~~~~p~~l~~l~~------L~~L~Ls~n~l~~~~~~~l~~l~~~~~~~~L~ 320 (833)
|.+++..+..+..+ ++|++|++++|.+.+..|..++.+++ |++|++++|.+++..+..+....
T Consensus 158 N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l--------- 228 (844)
T 3j0a_A 158 NQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAI--------- 228 (844)
T ss_dssp SCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTS---------
T ss_pred CcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhc---------
Confidence 88888888888777 78888888888888877777766665 88888888888776665544321
Q ss_pred EEEcccccccccChhhhcCCCCCCEEECcCCccccccCCCccCCccccEEEccCccCCCCCChhhccc--ccccEEeecC
Q 048006 321 SLYLENSLTGVISESFFSNISNLKELHLANNPLVLKLSHDWVPPFQLIIISLSSCKIGPHFPKWLQTQ--NQIELLDISN 398 (833)
Q Consensus 321 ~L~L~~~~~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~l--~~L~~L~Ls~ 398 (833)
..++++.+.++.+..... +..+.+....+..+..+ ++|+.|++++
T Consensus 229 ------------------~~~~l~~L~l~~~~~~~~---------------~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~ 275 (844)
T 3j0a_A 229 ------------------SKSQAFSLILAHHIMGAG---------------FGFHNIKDPDQNTFAGLARSSVRHLDLSH 275 (844)
T ss_dssp ------------------CSCCBSEEECCSSCCBCS---------------SSCSSSTTGGGTTTTTTTTSCCCEEECTT
T ss_pred ------------------Ccccccceeccccccccc---------------ccccccCCCChhhhhccccCCccEEECCC
Confidence 123445555543322110 11122222333344443 6899999999
Q ss_pred CccccccchhHHhhcccccEEEcccccccccCCccccccCCCCCceecccCcccccCCCCCCCCceeecCCCcccccccc
Q 048006 399 TGISDTIPDWFWNLSNKFSFLDLASNQIKGKLPNLSSRFGTSNPGIDISSNHFEGLIPPLPSNSSFLNLSKNRFSGSISF 478 (833)
Q Consensus 399 n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~ 478 (833)
|.+.+..+..+..+ ++|+.|++++|++++..|..
T Consensus 276 n~l~~~~~~~~~~l-~~L~~L~L~~n~i~~~~~~~--------------------------------------------- 309 (844)
T 3j0a_A 276 GFVFSLNSRVFETL-KDLKVLNLAYNKINKIADEA--------------------------------------------- 309 (844)
T ss_dssp CCCCEECSCCSSSC-CCCCEEEEESCCCCEECTTT---------------------------------------------
T ss_pred CcccccChhhhhcC-CCCCEEECCCCcCCCCChHH---------------------------------------------
Confidence 99988777766554 36777777777766443321
Q ss_pred cccccCCcccEEEcCCCcCcCCCCCcccCCCCCcEEEccCCcccccCCCCccCcCCccEEEcccCcCccccCccccCCCC
Q 048006 479 LCSISGSKLTYVDLSSNLLSGKLPDCWWTFDSLVILNLENNSFSGRIPDSMGFLQNIQTLSLHNNRLTGELSSSFRNCSQ 558 (833)
Q Consensus 479 ~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 558 (833)
+..+++|++|++++|.+++..|..|..+++|++|++++|.+.+..+..|..+++|++|++++|.+++. ..+++
T Consensus 310 --~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i-----~~~~~ 382 (844)
T 3j0a_A 310 --FYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTI-----HFIPS 382 (844)
T ss_dssp --TTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCC-----SSCCS
T ss_pred --hcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcc-----cCCCC
Confidence 01147899999999999988899999999999999999999988888899999999999999999843 23789
Q ss_pred CcEeccCCCccCCCCCcchhhcCCccceEEecCCcccccc-cccccCCCCCCEEeccCCcCcccCCc-cccccccccccC
Q 048006 559 LRLLDLGKNALYGEIPTWMGESLSNLIVLSLKSNKFHGKI-PFQLCQLAFLQVLDLSLNNISGKIPK-CFNNFTAMTQER 636 (833)
Q Consensus 559 L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~-~~~l~~l~~L~~L~Ls~N~l~~~~p~-~~~~l~~L~~l~ 636 (833)
|+.|++++|++. .+|.. ..+++.|++++|.+++.. +..+..+++|+.|++++|++++..+. .+..
T Consensus 383 L~~L~l~~N~l~-~l~~~----~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~-------- 449 (844)
T 3j0a_A 383 IPDIFLSGNKLV-TLPKI----NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSE-------- 449 (844)
T ss_dssp CSEEEEESCCCC-CCCCC----CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCS--------
T ss_pred cchhccCCCCcc-ccccc----ccccceeecccCccccCchhhhhhcCCccceeeCCCCccccccccccccc--------
Confidence 999999999998 77764 567999999999998642 33466899999999999999865443 2222
Q ss_pred CCCcccccceEEeeccCcchhccccCcccEEEccCCcCC-----CCCchhhhcccCCcEEECCCccccccCCcccCCCCC
Q 048006 637 SSDPTIKDKLMLTWKGSEREYRSTLGLVKSLELSNNNLN-----GAVPEEIMDLVGLVALNLSKNHLTGQISPKIGQLKS 711 (833)
Q Consensus 637 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~-----~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~ 711 (833)
+++|+.|++++|.++ +..+..|.++++|++|+|++|++++..|..|..+++
T Consensus 450 ------------------------~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 505 (844)
T 3j0a_A 450 ------------------------NPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTA 505 (844)
T ss_dssp ------------------------CTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCS
T ss_pred ------------------------CCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhh
Confidence 344589999999997 445567889999999999999999999999999999
Q ss_pred CCEEeCCCCcCcccCCccccCCCCCCEEECcCCcCccCCCCccccCccccccccCCCCCCCCCCC
Q 048006 712 LDFLDLSRNQLVGGIPSSLSQLSGLSVMDLSYNNLSGKIPTVTQLQSFNDTVYAGNPELCGLPLP 776 (833)
Q Consensus 712 L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~l~~~~~~gn~~lc~~~~~ 776 (833)
|+.|+|++|++++..|..+. ++|+.||+++|++++.+|.. +..+..+++.|||+.|+|++.
T Consensus 506 L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~--~~~L~~l~l~~Np~~C~c~~~ 566 (844)
T 3j0a_A 506 LRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDV--FVSLSVLDITHNKFICECELS 566 (844)
T ss_dssp CSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCC--CSSCCEEEEEEECCCCSSSCC
T ss_pred hheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhH--hCCcCEEEecCCCcccccccH
Confidence 99999999999988877776 89999999999999999965 567788889999999999853
No 12
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=2e-52 Score=491.45 Aligned_cols=547 Identities=17% Similarity=0.184 Sum_probs=285.4
Q ss_pred CCCCCHHHHHHHHHhhhcCcCCCCCCCCCCCCC--CCCCC--Ccc------------cceEecCCCCcEEEEECCCCCCC
Q 048006 8 IIRCIDEEREALLTFKASLVDESGVLSSWGPED--EKRDC--CKW------------TGLRCSNKTNHVILLDLQPIDFD 71 (833)
Q Consensus 8 ~~~~~~~~~~~ll~~k~~~~~~~~~~~~w~~~~--~~~~~--c~w------------~gv~c~~~~~~v~~l~L~~~~~~ 71 (833)
..++..+|+.||++||+++.+| +|+... ...+| |.| .||+|+. .+||+.|+|++
T Consensus 263 ~~~~~~~d~~ALl~~k~~l~~~-----~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~-~~~V~~L~Ls~---- 332 (876)
T 4ecn_A 263 ETAEYIKDYKALKAIWEALDGK-----NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDN-NGRVTGLSLAG---- 332 (876)
T ss_dssp CCCHHHHHHHHHHHHHHHTTGG-----GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECT-TSCEEEEECTT----
T ss_pred ccccchHHHHHHHHHHHHcCCC-----CCCcCCCcccccCCccccccccccccccCcCceEecC-CCCEEEEECcc----
Confidence 3446678999999999999876 786311 01355 999 9999985 68999999999
Q ss_pred CCCcceecCccccCCCCCCEEeC-CCCCCCCCCccccccCCCCCCEEEccCCCCCCCCCcccCCccccceecccCccCCC
Q 048006 72 SFPLRGTISPALLKLHDLRHLNL-SFNDFSGSPIPEFIGSLSKLRYLDLFGTVFAGPIPPQLGNLSRLQHLDLGSNYLFS 150 (833)
Q Consensus 72 ~~~l~~~~~~~l~~l~~L~~L~L-s~n~~~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~~~~ 150 (833)
+.+.|.+|+++++|++|++|+| ++|.+++. .|-..... .++++. ..+..++..... .+..
T Consensus 333 -~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~-~~~~~~~~----~~~l~~-----------~~l~~lr~~~~~--~~l~ 393 (876)
T 4ecn_A 333 -FGAKGRVPDAIGQLTELKVLSFGTHSETVSG-RLFGDEEL----TPDMSE-----------ERKHRIRMHYKK--MFLD 393 (876)
T ss_dssp -TCCEEEECGGGGGCTTCCEEESCCTTHHHHT-TCBTTBCC----CSSCCH-----------HHHHHHHTHHHH--HHTC
T ss_pred -CCCCCcCchHHhccccceEeeeccccccccc-cccccccc----ccccch-----------hHHHHHHHhhhh--hhhc
Confidence 7899999999999999999999 88877764 22111000 000000 001111110000 0000
Q ss_pred CCCcccccCCCCCcEEecCCCCCCCCchhHHhhcCCCCCCEEEccCCCCCCCCCccccccccCCCCCEEEcc--CCcCCC
Q 048006 151 TGNLDWLSHLSYLRYLNLDESNLANSSDWFQVIGKLHSLKTLSLHSCYLPPVIPLSLNHLNSSTSLETLVLS--DNNLTS 228 (833)
Q Consensus 151 ~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~Ls--~n~l~~ 228 (833)
..+. ..+.. .++..+...+....+ ..... ..++.+.+. .|++++
T Consensus 394 -~~~~---------------~~~s~--l~~~~l~~~~~~~~i---------------~~~~~-l~l~~l~l~~~~N~L~~ 439 (876)
T 4ecn_A 394 -YDQR---------------LNLSD--LLQDAINRNPEMKPI---------------KKDSR-ISLKDTQIGNLTNRITF 439 (876)
T ss_dssp -CCGG---------------GGSCH--HHHHHHHTCTTSCCC---------------CCCCC-CCCCTTTTTCCSCEEEE
T ss_pred -cCcc---------------hhhhH--HHHHHhhhCcccccc---------------ccccc-cchhhceeccccCcccc
Confidence 0000 00000 011111111100000 00000 112222222 244444
Q ss_pred CCCCcccccccCCcEEEccCccccc-----------------ccccccc--CCCCCcEEECcCCcccccccccccCCCCC
Q 048006 229 SIYPWLPNISSIFISIDLGFNQLQG-----------------SIPESFQ--HMVYLEHLRLSFNELEGGIPKFFGNMCSL 289 (833)
Q Consensus 229 ~~~~~l~~l~~~L~~L~Ls~n~l~~-----------------~~p~~~~--~l~~L~~L~L~~n~l~~~~p~~l~~l~~L 289 (833)
+|..+.++++ |++|+|++|.+++ .+|..++ ++++|++|+|++|++.+.+|..|+++++|
T Consensus 440 -IP~~l~~L~~-L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L 517 (876)
T 4ecn_A 440 -ISKAIQRLTK-LQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPEL 517 (876)
T ss_dssp -ECGGGGGCTT-CCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSC
T ss_pred -hhHHHhcCCC-CCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCC
Confidence 4555555555 5555555555554 5888877 99999999999999999999999999999
Q ss_pred cEEEccCCC-CCc-hhhHHHhhcCCccccCCccEEEcccccccccChhhhcCCCCCCEEECcCCccccccCC--CccCCc
Q 048006 290 ITLNLSNNK-LSG-QLSEIIQNLSSGCLENSLKSLYLENSLTGVISESFFSNISNLKELHLANNPLVLKLSH--DWVPPF 365 (833)
Q Consensus 290 ~~L~Ls~n~-l~~-~~~~~l~~l~~~~~~~~L~~L~L~~~~~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~~~~~ 365 (833)
++|++++|+ +++ .+|..++.++ ..+..+++|++|++++|.+. .++. .+..++
T Consensus 518 ~~L~Ls~N~~lsg~~iP~~i~~L~-----------------------~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~ 573 (876)
T 4ecn_A 518 QSLNIACNRGISAAQLKADWTRLA-----------------------DDEDTGPKIQIFYMGYNNLE-EFPASASLQKMV 573 (876)
T ss_dssp CEEECTTCTTSCHHHHHHHHHHHH-----------------------HCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCT
T ss_pred CEEECcCCCCcccccchHHHHhhh-----------------------hcccccCCccEEEeeCCcCC-ccCChhhhhcCC
Confidence 999999998 888 8888887653 02455666777777666665 3333 333333
Q ss_pred cccEEEccCccCCCCCChhhcccccccEEeecCCccccccchhHHhhcccccEEEcccccccccCCccccccCCCCCcee
Q 048006 366 QLIIISLSSCKIGPHFPKWLQTQNQIELLDISNTGISDTIPDWFWNLSNKFSFLDLASNQIKGKLPNLSSRFGTSNPGID 445 (833)
Q Consensus 366 ~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~~l~~l~ 445 (833)
+|++|++++|.++ .+| .+..+++|+.|++++|.++ .+|..+..+
T Consensus 574 ~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l--------------------------------- 617 (876)
T 4ecn_A 574 KLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAF--------------------------------- 617 (876)
T ss_dssp TCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEE---------------------------------
T ss_pred CCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhc---------------------------------
Confidence 4444444444433 333 3344444444444444433 222222211
Q ss_pred cccCcccccCCCCCCCCceeecCCCcccccccccccccCCc-ccEEEcCCCcCcCCCCCcccCCCC--CcEEEccCCccc
Q 048006 446 ISSNHFEGLIPPLPSNSSFLNLSKNRFSGSISFLCSISGSK-LTYVDLSSNLLSGKLPDCWWTFDS--LVILNLENNSFS 522 (833)
Q Consensus 446 l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~-L~~L~ls~n~l~~~~~~~~~~l~~--L~~L~Ls~N~l~ 522 (833)
++ |++|++++|.++ .+|..+..++. |+.|++++|.+.
T Consensus 618 ---------------------------------------~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~ 657 (876)
T 4ecn_A 618 ---------------------------------------TDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIG 657 (876)
T ss_dssp ---------------------------------------CTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTT
T ss_pred ---------------------------------------cccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCC
Confidence 22 333333333333 22333322221 333444444333
Q ss_pred ccCCCC---cc--CcCCccEEEcccCcCccccCccccCCCCCcEeccCCCccCCCCCcchhhcCCccceEEecCCccccc
Q 048006 523 GRIPDS---MG--FLQNIQTLSLHNNRLTGELSSSFRNCSQLRLLDLGKNALYGEIPTWMGESLSNLIVLSLKSNKFHGK 597 (833)
Q Consensus 523 ~~~~~~---~~--~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~ 597 (833)
+.+|.. +. .+++|++|++++|+++...+..+..+++|+.|++++|++. .+|..++....
T Consensus 658 g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~--------------- 721 (876)
T 4ecn_A 658 SEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-SIPENSLKPKD--------------- 721 (876)
T ss_dssp TTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTT---------------
T ss_pred CccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCC-ccChHHhcccc---------------
Confidence 322211 11 1224455555555554222222234455555555555554 44444332111
Q ss_pred ccccccCCCCCCEEeccCCcCcccCCcccc--ccccccccCCCCcccccceEEeeccCcchhccccCcccEEEccCCcCC
Q 048006 598 IPFQLCQLAFLQVLDLSLNNISGKIPKCFN--NFTAMTQERSSDPTIKDKLMLTWKGSEREYRSTLGLVKSLELSNNNLN 675 (833)
Q Consensus 598 ~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~--~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~ 675 (833)
..+.++++|+.|+|++|+++ .+|..+. .+++| +.|+|++|+++
T Consensus 722 --~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L--------------------------------~~L~Ls~N~L~ 766 (876)
T 4ecn_A 722 --GNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYL--------------------------------SNMDVSYNCFS 766 (876)
T ss_dssp --SCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTC--------------------------------CEEECCSSCCS
T ss_pred --ccccccCCccEEECCCCCCc-cchHHhhhccCCCc--------------------------------CEEEeCCCCCC
Confidence 00011124444445444444 3333332 33222 44555555554
Q ss_pred CCCchhhhcccCCcEEECC------CccccccCCcccCCCCCCCEEeCCCCcCcccCCccccCCCCCCEEECcCCcCccC
Q 048006 676 GAVPEEIMDLVGLVALNLS------KNHLTGQISPKIGQLKSLDFLDLSRNQLVGGIPSSLSQLSGLSVMDLSYNNLSGK 749 (833)
Q Consensus 676 ~~~p~~l~~l~~L~~L~Ls------~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ 749 (833)
+ +|..+..+++|+.|+|+ +|++.+.+|..|.++++|+.|+|++|++ +.+|..+. ++|+.||+++|++...
T Consensus 767 ~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~i 842 (876)
T 4ecn_A 767 S-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNISI 842 (876)
T ss_dssp S-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCEE
T ss_pred c-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCCcc
Confidence 3 44445555555555554 4777778888888888888888888888 57777665 5788888888887654
Q ss_pred CCCcc-ccCccccccccCCCCCC--CCC
Q 048006 750 IPTVT-QLQSFNDTVYAGNPELC--GLP 774 (833)
Q Consensus 750 ip~~~-~~~~l~~~~~~gn~~lc--~~~ 774 (833)
-+... .........+.+|+..+ ||+
T Consensus 843 ~~~~~~~~~~~~~~~L~~n~~~~I~gC~ 870 (876)
T 4ecn_A 843 DVTSVCPYIEAGMYVLLYDKTQDIRGCD 870 (876)
T ss_dssp ECGGGHHHHHTTCCEEECCTTSEEESCG
T ss_pred ChHHccccccchheeecCCCccccCCCC
Confidence 43221 11112334455665544 554
No 13
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=8.5e-49 Score=452.76 Aligned_cols=502 Identities=23% Similarity=0.262 Sum_probs=311.4
Q ss_pred CCCCEEeCCCCCCCCCCccccccCCCCCCEEEccCCCCCCCCCcccCCccccceecccCccCCCCCCcccccCCCCCcEE
Q 048006 87 HDLRHLNLSFNDFSGSPIPEFIGSLSKLRYLDLFGTVFAGPIPPQLGNLSRLQHLDLGSNYLFSTGNLDWLSHLSYLRYL 166 (833)
Q Consensus 87 ~~L~~L~Ls~n~~~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L 166 (833)
+++++|+|++|.+++. .+..|..+++|++|+|++|.+.+..|..|.++++|++|++++|.+.. ..+..|+++++|++|
T Consensus 28 ~~l~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L 105 (570)
T 2z63_A 28 FSTKNLDLSFNPLRHL-GSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS-LALGAFSGLSSLQKL 105 (570)
T ss_dssp SSCCEEECCSCCCCEE-CTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCE-ECTTTTTTCTTCCEE
T ss_pred ccccEEEccCCccCcc-ChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCc-cCHhhhcCccccccc
Confidence 4678888888888764 45577788888888888888776666777778888888888777653 233455666666666
Q ss_pred ecCCCCCCCCchhHHhhcCCCCCCEEEccCCCCCCCCCccccccccCCCCCEEEccCCcCCC-CCCCcccccccCCcEEE
Q 048006 167 NLDESNLANSSDWFQVIGKLHSLKTLSLHSCYLPPVIPLSLNHLNSSTSLETLVLSDNNLTS-SIYPWLPNISSIFISID 245 (833)
Q Consensus 167 ~Ls~n~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~-~~~~~l~~l~~~L~~L~ 245 (833)
++++|.++.++.. .++++ ++|++|++++|.+++ .+|..+.++++ |++|+
T Consensus 106 ~L~~n~l~~l~~~--~~~~l---------------------------~~L~~L~L~~n~l~~~~lp~~~~~l~~-L~~L~ 155 (570)
T 2z63_A 106 VAVETNLASLENF--PIGHL---------------------------KTLKELNVAHNLIQSFKLPEYFSNLTN-LEHLD 155 (570)
T ss_dssp ECTTSCCCCSTTC--SCTTC---------------------------TTCCEEECCSSCCCCCCCCGGGGGCTT-CCEEE
T ss_pred cccccccccCCCc--ccccc---------------------------ccccEEecCCCccceecChhhhcccCC-CCEEe
Confidence 6666655553221 23444 555555555555544 24555555555 66666
Q ss_pred ccCccccccccccccCCCCC----cEEECcCCcccccccccccCCCCCcEEEccCCCCC-chhhHHHhhcCCccccCCcc
Q 048006 246 LGFNQLQGSIPESFQHMVYL----EHLRLSFNELEGGIPKFFGNMCSLITLNLSNNKLS-GQLSEIIQNLSSGCLENSLK 320 (833)
Q Consensus 246 Ls~n~l~~~~p~~~~~l~~L----~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~-~~~~~~l~~l~~~~~~~~L~ 320 (833)
+++|.+++..+..++.+++| ++|++++|.+++..|..+... +|++|++++|... ...+..+..++ .++
T Consensus 156 l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~------~l~ 228 (570)
T 2z63_A 156 LSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLA------GLE 228 (570)
T ss_dssp CTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTT------TCE
T ss_pred CcCCccceecHHHccchhccchhhhhcccCCCCceecCHHHhccC-cceeEecccccccccchhhhhcCcc------ccc
Confidence 66666666666666666666 677777777777666666555 6778887777543 23455566665 555
Q ss_pred EEEcccccccccChhhhcCCCCCCEEECcCCccccccCCCccCCc--cccEEEccCc-cCCCCCChhhcccccccEEeec
Q 048006 321 SLYLENSLTGVISESFFSNISNLKELHLANNPLVLKLSHDWVPPF--QLIIISLSSC-KIGPHFPKWLQTQNQIELLDIS 397 (833)
Q Consensus 321 ~L~L~~~~~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~--~L~~L~L~~~-~l~~~~~~~l~~l~~L~~L~Ls 397 (833)
.+.+.... +....+++. +. ...+..+. .++.+++.++ .+.+..|..+..+++|+.|+++
T Consensus 229 ~~~l~~~~--------~~~~~~l~~--~~--------~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~ 290 (570)
T 2z63_A 229 VHRLVLGE--------FRNEGNLEK--FD--------KSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLV 290 (570)
T ss_dssp EEEEEEEE--------CCCCSSCEE--CC--------TTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEE
T ss_pred eeeecccc--------ccCchhhhh--cc--------hhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEec
Confidence 55441110 011111111 01 11111111 3566666666 5666778888888888888888
Q ss_pred CCccccccchhHHhhcccccEEEcccccccccCCccccccCCCCCceecccCcccccCCCCCCCCceeecCCCccccccc
Q 048006 398 NTGISDTIPDWFWNLSNKFSFLDLASNQIKGKLPNLSSRFGTSNPGIDISSNHFEGLIPPLPSNSSFLNLSKNRFSGSIS 477 (833)
Q Consensus 398 ~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~ 477 (833)
+|.++ .+|..+... +|++|++++|.+. .+|..
T Consensus 291 ~~~l~-~l~~~~~~~--~L~~L~l~~n~~~-~l~~~-------------------------------------------- 322 (570)
T 2z63_A 291 SVTIE-RVKDFSYNF--GWQHLELVNCKFG-QFPTL-------------------------------------------- 322 (570)
T ss_dssp SCEEC-SCCBCCSCC--CCSEEEEESCBCS-SCCBC--------------------------------------------
T ss_pred Cccch-hhhhhhccC--CccEEeeccCccc-ccCcc--------------------------------------------
Confidence 88776 344443332 3444444444433 11110
Q ss_pred ccccccCCcccEEEcCCCcCcCCCCCcccCCCCCcEEEccCCcccccCCCCccCcCCccEEEcccCcCccccCccccCCC
Q 048006 478 FLCSISGSKLTYVDLSSNLLSGKLPDCWWTFDSLVILNLENNSFSGRIPDSMGFLQNIQTLSLHNNRLTGELSSSFRNCS 557 (833)
Q Consensus 478 ~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 557 (833)
.+++|++|++++|.+.+..+. ..+++|++|++++|.+++.. ..+..+..++
T Consensus 323 -----~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~----------------------~~~~~~~~~~ 373 (570)
T 2z63_A 323 -----KLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKG----------------------CCSQSDFGTT 373 (570)
T ss_dssp -----BCSSCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEE----------------------EEEHHHHTCS
T ss_pred -----cccccCEEeCcCCcccccccc--ccCCCCCEEeCcCCccCccc----------------------cccccccccC
Confidence 024455555555554433332 34445555555555444322 0134444555
Q ss_pred CCcEeccCCCccCCCCCcchhhcCCccceEEecCCccccccc-ccccCCCCCCEEeccCCcCcccCCccccccccccccC
Q 048006 558 QLRLLDLGKNALYGEIPTWMGESLSNLIVLSLKSNKFHGKIP-FQLCQLAFLQVLDLSLNNISGKIPKCFNNFTAMTQER 636 (833)
Q Consensus 558 ~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~~-~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~ 636 (833)
+|++|++++|++. .+|..+. .+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+..|..|..+++|
T Consensus 374 ~L~~L~l~~n~l~-~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L---- 447 (570)
T 2z63_A 374 SLKYLDLSFNGVI-TMSSNFL-GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSL---- 447 (570)
T ss_dssp CCCEEECCSCSEE-EEEEEEE-TCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTC----
T ss_pred ccCEEECCCCccc-ccccccc-ccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcC----
Confidence 5555555555554 2333322 45555555555555554433 345566666666666666666666655555544
Q ss_pred CCCcccccceEEeeccCcchhccccCcccEEEccCCcCC-CCCchhhhcccCCcEEECCCccccccCCcccCCCCCCCEE
Q 048006 637 SSDPTIKDKLMLTWKGSEREYRSTLGLVKSLELSNNNLN-GAVPEEIMDLVGLVALNLSKNHLTGQISPKIGQLKSLDFL 715 (833)
Q Consensus 637 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~-~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L 715 (833)
+.|++++|+++ +.+|..+..+++|++|++++|++++..|..|..+++|+.|
T Consensus 448 ----------------------------~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 499 (570)
T 2z63_A 448 ----------------------------EVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVL 499 (570)
T ss_dssp ----------------------------CEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred ----------------------------cEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEE
Confidence 66777777765 4577778888999999999999998889999999999999
Q ss_pred eCCCCcCcccCCccccCCCCCCEEECcCCcCccCCCCcccc
Q 048006 716 DLSRNQLVGGIPSSLSQLSGLSVMDLSYNNLSGKIPTVTQL 756 (833)
Q Consensus 716 ~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~~~~ 756 (833)
++++|++++..|..+..+++|+.|++++|+++|.+|....+
T Consensus 500 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~ 540 (570)
T 2z63_A 500 NMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYL 540 (570)
T ss_dssp ECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTTHHH
T ss_pred eCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcchHHH
Confidence 99999999988888999999999999999999999986554
No 14
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=1.5e-48 Score=448.16 Aligned_cols=510 Identities=21% Similarity=0.225 Sum_probs=308.4
Q ss_pred CCcccceEecCCCCcEEEEECCCCCCCCCCcceecCccccCCCCCCEEeCCCCCCCCCCccccccCCCCCCEEEccCCCC
Q 048006 45 CCKWTGLRCSNKTNHVILLDLQPIDFDSFPLRGTISPALLKLHDLRHLNLSFNDFSGSPIPEFIGSLSKLRYLDLFGTVF 124 (833)
Q Consensus 45 ~c~w~gv~c~~~~~~v~~l~L~~~~~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~p~~~~~l~~L~~L~Ls~n~l 124 (833)
.|.|.|| |+... +.++ .+|..+. ++|++|+|++|++++. .|..|..+++|++|+|++|.+
T Consensus 3 ~C~~~~~-c~~~~---------------~~l~-~ip~~~~--~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~i 62 (549)
T 2z81_A 3 SCDASGV-CDGRS---------------RSFT-SIPSGLT--AAMKSLDLSFNKITYI-GHGDLRACANLQVLILKSSRI 62 (549)
T ss_dssp EECTTSE-EECTT---------------SCCS-SCCSCCC--TTCCEEECCSSCCCEE-CSSTTSSCTTCCEEECTTSCC
T ss_pred cCCCCce-EECCC---------------Cccc-cccccCC--CCccEEECcCCccCcc-ChhhhhcCCcccEEECCCCCc
Confidence 4899998 86432 2232 3444443 7899999999999875 678899999999999999999
Q ss_pred CCCCCcccCCccccceecccCccCCCCCCcccccCCCCCcEEecCCCCCCCCchhHHhhcCCCCCCEEEccCCCCCCCCC
Q 048006 125 AGPIPPQLGNLSRLQHLDLGSNYLFSTGNLDWLSHLSYLRYLNLDESNLANSSDWFQVIGKLHSLKTLSLHSCYLPPVIP 204 (833)
Q Consensus 125 ~~~~p~~~~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~ 204 (833)
.+..|..|+++++|++|++++|.+.. ..+..++++++|++|++++|.+++. ..|..++++++|++|++++|.+.+.+|
T Consensus 63 ~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~~l~~L~~L~L~~n~~~~~~~ 140 (549)
T 2z81_A 63 NTIEGDAFYSLGSLEHLDLSDNHLSS-LSSSWFGPLSSLKYLNLMGNPYQTL-GVTSLFPNLTNLQTLRIGNVETFSEIR 140 (549)
T ss_dssp CEECTTTTTTCTTCCEEECTTSCCCS-CCHHHHTTCTTCCEEECTTCCCSSS-CSSCSCTTCTTCCEEEEEESSSCCEEC
T ss_pred CccChhhccccccCCEEECCCCccCc-cCHHHhccCCCCcEEECCCCccccc-chhhhhhccCCccEEECCCCccccccC
Confidence 98888889999999999999998864 3334577888888888888877754 133456777777777777776444444
Q ss_pred ccccccccCCCCCEEEccCCcCCCCCCCcccccccCCcEEEccCccccccccccccCCCCCcEEECcCCcccccc--c-c
Q 048006 205 LSLNHLNSSTSLETLVLSDNNLTSSIYPWLPNISSIFISIDLGFNQLQGSIPESFQHMVYLEHLRLSFNELEGGI--P-K 281 (833)
Q Consensus 205 ~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~--p-~ 281 (833)
. ..+..+++|++|++++|.+++..|..+..+++ |++|++++|.+....+..+..+++|++|++++|++++.. | .
T Consensus 141 ~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~-L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 217 (549)
T 2z81_A 141 R--IDFAGLTSLNELEIKALSLRNYQSQSLKSIRD-IHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLP 217 (549)
T ss_dssp T--TTTTTCCEEEEEEEEETTCCEECTTTTTTCSE-EEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCS
T ss_pred H--hhhhcccccCeeeccCCcccccChhhhhcccc-CceEecccCcccccchhhHhhcccccEEEccCCccccccccccc
Confidence 2 22223366666666666666666666666666 666666666655332222345666666666666666431 1 1
Q ss_pred cccCCCCCcEEEccCCCCCchhhHHHhhcCCccccCCccEEEcccccccccChhhhcCCCCCCEEECcCCccccccCCCc
Q 048006 282 FFGNMCSLITLNLSNNKLSGQLSEIIQNLSSGCLENSLKSLYLENSLTGVISESFFSNISNLKELHLANNPLVLKLSHDW 361 (833)
Q Consensus 282 ~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~~~~~~L~~L~L~~~~~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 361 (833)
....+++|++|++++|.+++..+..+.. .+..+++|+.+++++|.+.+.....
T Consensus 218 ~~~~~~~L~~L~l~~n~l~~~~~~~l~~--------------------------~~~~~~~L~~l~l~~~~~~~~~~~~- 270 (549)
T 2z81_A 218 VDEVSSPMKKLAFRGSVLTDESFNELLK--------------------------LLRYILELSEVEFDDCTLNGLGDFN- 270 (549)
T ss_dssp SCCCCCCCCEEEEESCEEEHHHHHHHHG--------------------------GGGGCTTCCEEEEESCEEECCSCCC-
T ss_pred hhhhhhcccceeccccccchhHHHHHHH--------------------------Hhhhhcccccccccccccccccccc-
Confidence 1234556666666666655544443322 1234455555555555443311000
Q ss_pred cCCccccEEEccCccCCCCCChhhcccccccEEeecCCccccccchhHHhhcccccEEEcccccccccCCccccccCCCC
Q 048006 362 VPPFQLIIISLSSCKIGPHFPKWLQTQNQIELLDISNTGISDTIPDWFWNLSNKFSFLDLASNQIKGKLPNLSSRFGTSN 441 (833)
Q Consensus 362 ~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~~l 441 (833)
......+..+++|+.|++.++.+.... ..
T Consensus 271 -----------------~~~~~~~~~l~~L~~L~l~~~~i~~~~-------------------------~~--------- 299 (549)
T 2z81_A 271 -----------------PSESDVVSELGKVETVTIRRLHIPQFY-------------------------LF--------- 299 (549)
T ss_dssp -----------------CCTTTCCCCCTTCCEEEEESCBCSCGG-------------------------GS---------
T ss_pred -----------------ccchhhhhhhcccccccccccccchhh-------------------------hc---------
Confidence 000011222333333333333221100 00
Q ss_pred CceecccCcccccCCCCCCCCceeecCCCcccccccccccccCCcccEEEcCCCcCcCCCCCcc-cCCCCCcEEEccCCc
Q 048006 442 PGIDISSNHFEGLIPPLPSNSSFLNLSKNRFSGSISFLCSISGSKLTYVDLSSNLLSGKLPDCW-WTFDSLVILNLENNS 520 (833)
Q Consensus 442 ~~l~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~-~~l~~L~~L~Ls~N~ 520 (833)
. .++... ...++|++|++++|.+. .+|..+ ..+++|++|++++|+
T Consensus 300 ------------------~--------------~l~~~~-~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~ 345 (549)
T 2z81_A 300 ------------------Y--------------DLSTVY-SLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENL 345 (549)
T ss_dssp ------------------C--------------CCCHHH-HHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSC
T ss_pred ------------------c--------------cchhhh-hhcccceEEEeccCccc-cCCHHHHhcCccccEEEccCCc
Confidence 0 000000 00244555555555554 333333 345555555555555
Q ss_pred ccccCCCCccCcCCccEEEcccCcCccccCccccCCCCCcEeccCCCccCCCCCc--chhhcCCccceEEecCCcccccc
Q 048006 521 FSGRIPDSMGFLQNIQTLSLHNNRLTGELSSSFRNCSQLRLLDLGKNALYGEIPT--WMGESLSNLIVLSLKSNKFHGKI 598 (833)
Q Consensus 521 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~--~~~~~l~~L~~L~L~~N~l~~~~ 598 (833)
+++.+|.. +..+..+++|++|++++|+++ .++. ..+..+++|++|++++|+++ .+
T Consensus 346 l~~~~~~~---------------------~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l 402 (549)
T 2z81_A 346 MVEEYLKN---------------------SACKGAWPSLQTLVLSQNHLR-SMQKTGEILLTLKNLTSLDISRNTFH-PM 402 (549)
T ss_dssp CCHHHHHH---------------------HTCTTSSTTCCEEECTTSCCC-CHHHHHHHGGGCTTCCEEECTTCCCC-CC
T ss_pred cccccccc---------------------hhhhhccccCcEEEccCCccc-ccccchhhhhcCCCCCEEECCCCCCc-cC
Confidence 55433210 112344455555555555554 2221 11224556666666666665 45
Q ss_pred cccccCCCCCCEEeccCCcCcccCCccccccccccccCCCCcccccceEEeeccCcchhccccCcccEEEccCCcCCCCC
Q 048006 599 PFQLCQLAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKDKLMLTWKGSEREYRSTLGLVKSLELSNNNLNGAV 678 (833)
Q Consensus 599 ~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~ 678 (833)
|..+..+++|++|++++|++++ +|..+ +++|+.|++++|++++.+
T Consensus 403 p~~~~~~~~L~~L~Ls~N~l~~-l~~~~----------------------------------~~~L~~L~Ls~N~l~~~~ 447 (549)
T 2z81_A 403 PDSCQWPEKMRFLNLSSTGIRV-VKTCI----------------------------------PQTLEVLDVSNNNLDSFS 447 (549)
T ss_dssp CSCCCCCTTCCEEECTTSCCSC-CCTTS----------------------------------CTTCSEEECCSSCCSCCC
T ss_pred ChhhcccccccEEECCCCCccc-ccchh----------------------------------cCCceEEECCCCChhhhc
Confidence 5556666777777777777652 22221 123488888888888643
Q ss_pred chhhhcccCCcEEECCCccccccCCcccCCCCCCCEEeCCCCcCcccCCccccCCCCCCEEECcCCcCccCCCCccc
Q 048006 679 PEEIMDLVGLVALNLSKNHLTGQISPKIGQLKSLDFLDLSRNQLVGGIPSSLSQLSGLSVMDLSYNNLSGKIPTVTQ 755 (833)
Q Consensus 679 p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~~~ 755 (833)
..+++|++|+|++|+++ .+|. ...+++|+.|+|++|++++.+|..+..+++|+.|++++|+++|.+|....
T Consensus 448 ----~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~~~ 518 (549)
T 2z81_A 448 ----LFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDY 518 (549)
T ss_dssp ----CCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHHHHHH
T ss_pred ----ccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCccHHH
Confidence 57889999999999998 6666 56789999999999999999999999999999999999999999985433
No 15
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=1.6e-46 Score=440.17 Aligned_cols=567 Identities=23% Similarity=0.186 Sum_probs=362.8
Q ss_pred cCccccCCCCCCEEeCCCCCCCCCCccccccCCCCCCEEEccCCCCCCCCCcccCCccccceecccCccCCCCCCccccc
Q 048006 79 ISPALLKLHDLRHLNLSFNDFSGSPIPEFIGSLSKLRYLDLFGTVFAGPIPPQLGNLSRLQHLDLGSNYLFSTGNLDWLS 158 (833)
Q Consensus 79 ~~~~l~~l~~L~~L~Ls~n~~~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~~~~~~~~~~l~ 158 (833)
+|..+. +++++|||++|+|++. .+..|.++++|++|+|++|.|++..|.+|.+|++|++|+|++|++.. ..+..|+
T Consensus 46 vP~~lp--~~~~~LdLs~N~i~~l-~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~-l~~~~f~ 121 (635)
T 4g8a_A 46 IPDNLP--FSTKNLDLSFNPLRHL-GSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS-LALGAFS 121 (635)
T ss_dssp CCSSSC--TTCCEEECTTSCCCEE-CTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCE-ECGGGGT
T ss_pred cCCCCC--cCCCEEEeeCCCCCCC-CHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCC-CCHHHhc
Confidence 444442 4789999999999964 45689999999999999999997777789999999999999998764 3334577
Q ss_pred CCCCCcEEecCCCCCCCCchhHHhhcCCCCCCEEEccCCCCCCC-CCccccccccCCCCCEEEccCCcCCCCCCCccccc
Q 048006 159 HLSYLRYLNLDESNLANSSDWFQVIGKLHSLKTLSLHSCYLPPV-IPLSLNHLNSSTSLETLVLSDNNLTSSIYPWLPNI 237 (833)
Q Consensus 159 ~l~~L~~L~Ls~n~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~-~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l 237 (833)
++++|++|++++|++++++. ..++++++|++|++++|.+.+. .|. ....+++|++|++++|++++..+..+..+
T Consensus 122 ~L~~L~~L~Ls~N~l~~l~~--~~~~~L~~L~~L~Ls~N~l~~~~~~~---~~~~l~~L~~L~L~~N~l~~~~~~~l~~L 196 (635)
T 4g8a_A 122 GLSSLQKLVAVETNLASLEN--FPIGHLKTLKELNVAHNLIQSFKLPE---YFSNLTNLEHLDLSSNKIQSIYCTDLRVL 196 (635)
T ss_dssp TCTTCCEEECTTSCCCCSTT--CCCTTCTTCCEEECCSSCCCCCCCCG---GGGGCTTCCEEECCSSCCCEECGGGGHHH
T ss_pred CCCCCCEEECCCCcCCCCCh--hhhhcCcccCeeccccCccccCCCch---hhccchhhhhhcccCccccccccccccch
Confidence 77777777777777766422 2356666666666666665443 222 11222455555555555544433333322
Q ss_pred ccCCcEEEccCccccccccccccCCCCCcEEECcCCcccccccccccCCCCCcEEEccCCCCCchh-hHHHhhcCCcccc
Q 048006 238 SSIFISIDLGFNQLQGSIPESFQHMVYLEHLRLSFNELEGGIPKFFGNMCSLITLNLSNNKLSGQL-SEIIQNLSSGCLE 316 (833)
Q Consensus 238 ~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~-~~~l~~l~~~~~~ 316 (833)
.. ++ .....++++.|.++...+..+ ....++.+++.+|...... +..+..+.
T Consensus 197 ~~-l~--------------------~~~~~~~ls~n~l~~i~~~~~-~~~~~~~l~l~~n~~~~~~~~~~~~~l~----- 249 (635)
T 4g8a_A 197 HQ-MP--------------------LLNLSLDLSLNPMNFIQPGAF-KEIRLHKLTLRNNFDSLNVMKTCIQGLA----- 249 (635)
T ss_dssp HT-CT--------------------TCCCEEECTTCCCCEECTTTT-TTCEEEEEEEESCCSSHHHHHHHHHTTT-----
T ss_pred hh-hh--------------------hhhhhhhcccCcccccCcccc-cchhhhhhhhhcccccccccchhhcCCc-----
Confidence 21 10 112356666666664433333 3334566666666554322 23344444
Q ss_pred CCccEEEcccccccccChhhhcCCCCCCEEECcCCccccccCCCccCCccccEEEccCccCCC---CCChhhcccccccE
Q 048006 317 NSLKSLYLENSLTGVISESFFSNISNLKELHLANNPLVLKLSHDWVPPFQLIIISLSSCKIGP---HFPKWLQTQNQIEL 393 (833)
Q Consensus 317 ~~L~~L~L~~~~~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~~~l~~---~~~~~l~~l~~L~~ 393 (833)
.++...+..+.... . ..+.......+.....+....+..+.... ..+..+....+++.
T Consensus 250 -~l~~~~l~~~~~~~--------~----------~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~ 310 (635)
T 4g8a_A 250 -GLEVHRLVLGEFRN--------E----------GNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSS 310 (635)
T ss_dssp -TCEEEEEEEECCTT--------S----------CCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSE
T ss_pred -cccccccccccccc--------c----------cccccccccccccccchhhhhhhhhhhcccccchhhhhhhhccccc
Confidence 33333331000000 0 00001111112222223333322222111 12223344455555
Q ss_pred EeecCCccccccchhHHhhcccccEEEcccccccccCCccccccCCCCCceecccCcccccCCCCCCCCceeecCCCccc
Q 048006 394 LDISNTGISDTIPDWFWNLSNKFSFLDLASNQIKGKLPNLSSRFGTSNPGIDISSNHFEGLIPPLPSNSSFLNLSKNRFS 473 (833)
Q Consensus 394 L~Ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~L~~L~l~~n~l~ 473 (833)
+++.++.+....+..+ ...++.|++.+|.+. +..+..
T Consensus 311 l~~~~~~~~~~~~~~~---~~~L~~L~l~~~~~~-------------------------~~~~~~--------------- 347 (635)
T 4g8a_A 311 FSLVSVTIERVKDFSY---NFGWQHLELVNCKFG-------------------------QFPTLK--------------- 347 (635)
T ss_dssp EEEESCEEEECGGGGS---CCCCSEEEEESCEES-------------------------SCCCCB---------------
T ss_pred cccccccccccccccc---chhhhhhhccccccc-------------------------CcCccc---------------
Confidence 5555555443222111 113444444444333 221111
Q ss_pred ccccccccccCCcccEEEcCCCcCcCCCCCcccCCCCCcEEEccCCcccc--cCCCCccCcCCccEEEcccCcCccccCc
Q 048006 474 GSISFLCSISGSKLTYVDLSSNLLSGKLPDCWWTFDSLVILNLENNSFSG--RIPDSMGFLQNIQTLSLHNNRLTGELSS 551 (833)
Q Consensus 474 ~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~--~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 551 (833)
+..|+.++++.|.+.... .+..+++|+.+++++|.+.. ..+..+..+.+|+++++..|.... .+.
T Consensus 348 ----------l~~L~~l~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~-~~~ 414 (635)
T 4g8a_A 348 ----------LKSLKRLTFTSNKGGNAF--SEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVIT-MSS 414 (635)
T ss_dssp ----------CTTCCEEEEESCCSCCBC--CCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEE-ECS
T ss_pred ----------chhhhhcccccccCCCCc--ccccccccccchhhccccccccccccchhhhhhhhhhhcccccccc-ccc
Confidence 255667777777665332 34467788888888887753 344455667889999999888874 455
Q ss_pred cccCCCCCcEeccCCCccCCCCCcchhhcCCccceEEecCCcccccccccccCCCCCCEEeccCCcCc-ccCCccccccc
Q 048006 552 SFRNCSQLRLLDLGKNALYGEIPTWMGESLSNLIVLSLKSNKFHGKIPFQLCQLAFLQVLDLSLNNIS-GKIPKCFNNFT 630 (833)
Q Consensus 552 ~~~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~-~~~p~~~~~l~ 630 (833)
.+..+++|+.+++++|......+...+..+++++.++++.|.+.+..+..+..+++|+.|++++|.+. +..|..|..++
T Consensus 415 ~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~ 494 (635)
T 4g8a_A 415 NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELR 494 (635)
T ss_dssp CCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCT
T ss_pred cccccccccchhhhhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhcc
Confidence 67888999999999988886777666667899999999999999888888999999999999999854 35677777666
Q ss_pred cccccCCCCcccccceEEeeccCcchhccccCcccEEEccCCcCCCCCchhhhcccCCcEEECCCccccccCCcccCCCC
Q 048006 631 AMTQERSSDPTIKDKLMLTWKGSEREYRSTLGLVKSLELSNNNLNGAVPEEIMDLVGLVALNLSKNHLTGQISPKIGQLK 710 (833)
Q Consensus 631 ~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~ 710 (833)
+| +.|+|++|++++..|..|.++++|++|+|++|+|++..|..|.+++
T Consensus 495 ~L--------------------------------~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~ 542 (635)
T 4g8a_A 495 NL--------------------------------TFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLN 542 (635)
T ss_dssp TC--------------------------------CEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCT
T ss_pred cc--------------------------------CEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCC
Confidence 66 8999999999998999999999999999999999999899999999
Q ss_pred CCCEEeCCCCcCcccCCccccCC-CCCCEEECcCCcCccCCCCccccCccccccccCCCCCCCCCCCCCCCCCCCCCCCC
Q 048006 711 SLDFLDLSRNQLVGGIPSSLSQL-SGLSVMDLSYNNLSGKIPTVTQLQSFNDTVYAGNPELCGLPLPNKCRDEESAAGPG 789 (833)
Q Consensus 711 ~L~~L~Ls~N~l~~~~p~~l~~l-~~L~~L~ls~N~l~g~ip~~~~~~~l~~~~~~gn~~lc~~~~~~~c~~~~~~~~~~ 789 (833)
+|++|||++|+|++..|..+..+ ++|++|++++|+++|.+...+...+++. +...-.......|..|+..+|.+
T Consensus 543 ~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~~~~~~~wl~~-----~~~~~~~~~~~~C~~P~~~~g~~ 617 (635)
T 4g8a_A 543 SLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKD-----QRQLLVEVERMECATPSDKQGMP 617 (635)
T ss_dssp TCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSGGGHHHHHHHHH-----TTTTBSCGGGCBBCSSTTTTTCB
T ss_pred CCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccCCcHHHHHHHHh-----CCCccCCCCCceeCCchHHCCCE
Confidence 99999999999999999999988 6899999999999998875433333321 11111111235788898888877
Q ss_pred CccC
Q 048006 790 ITEG 793 (833)
Q Consensus 790 ~~~~ 793 (833)
+.+.
T Consensus 618 l~~~ 621 (635)
T 4g8a_A 618 VLSL 621 (635)
T ss_dssp GGGC
T ss_pred eeee
Confidence 7654
No 16
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=3.4e-46 Score=430.97 Aligned_cols=515 Identities=20% Similarity=0.204 Sum_probs=318.8
Q ss_pred cEEecCCCCCCCCchhHHhhcCCCCCCEEEccCCCCCCCCCccccccccCCCCCEEEccCCcCCCCCCCcccccccCCcE
Q 048006 164 RYLNLDESNLANSSDWFQVIGKLHSLKTLSLHSCYLPPVIPLSLNHLNSSTSLETLVLSDNNLTSSIYPWLPNISSIFIS 243 (833)
Q Consensus 164 ~~L~Ls~n~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~~L~~ 243 (833)
++++.++..++.+ |..+ .+++++|++++|.+++..+. .+.. +++|++|++++|++++..+..+.++++ |++
T Consensus 10 ~~~~c~~~~l~~i---p~~l--~~~l~~L~Ls~n~l~~~~~~--~~~~-l~~L~~L~Ls~n~i~~i~~~~~~~l~~-L~~ 80 (570)
T 2z63_A 10 ITYQCMELNFYKI---PDNL--PFSTKNLDLSFNPLRHLGSY--SFFS-FPELQVLDLSRCEIQTIEDGAYQSLSH-LST 80 (570)
T ss_dssp TEEECCSSCCSSC---CSSS--CSSCCEEECCSCCCCEECTT--TTTT-CSSCCEEECTTCCCCEECTTTTTTCTT-CCE
T ss_pred cEEEeCCCCcccc---CCCc--cccccEEEccCCccCccChh--HhhC-CCCceEEECCCCcCCccCcccccCchh-CCE
Confidence 4455555555443 2222 13566666666665554443 2222 255666666666665555555555555 666
Q ss_pred EEccCccccccccccccCCCCCcEEECcCCcccccccccccCCCCCcEEEccCCCCCc-hhhHHHhhcCCccccCCccEE
Q 048006 244 IDLGFNQLQGSIPESFQHMVYLEHLRLSFNELEGGIPKFFGNMCSLITLNLSNNKLSG-QLSEIIQNLSSGCLENSLKSL 322 (833)
Q Consensus 244 L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~-~~~~~l~~l~~~~~~~~L~~L 322 (833)
|++++|.+++..|..|+++++|++|++++|++++..+..++++++|++|++++|.+++ .+|..+++++ +|++|
T Consensus 81 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~------~L~~L 154 (570)
T 2z63_A 81 LILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLT------NLEHL 154 (570)
T ss_dssp EECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCT------TCCEE
T ss_pred EeCcCCcCCccCHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccC------CCCEE
Confidence 6666666655555556666666666666666555444445556666666666665554 2355555555 55555
Q ss_pred EcccccccccChhhhcCCCCC----CEEECcCCccccccCCCccCCccccEEEccCccCCC-CCChhhcccccccEEeec
Q 048006 323 YLENSLTGVISESFFSNISNL----KELHLANNPLVLKLSHDWVPPFQLIIISLSSCKIGP-HFPKWLQTQNQIELLDIS 397 (833)
Q Consensus 323 ~L~~~~~~~i~~~~~~~l~~L----~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~~~l~~-~~~~~l~~l~~L~~L~Ls 397 (833)
++++|.+..+++..|..+++| +.+++++|.+.+..+..+... +|+.|++++|.... .++..+..++.++.+.+.
T Consensus 155 ~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~ 233 (570)
T 2z63_A 155 DLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLV 233 (570)
T ss_dssp ECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEE
T ss_pred eCcCCccceecHHHccchhccchhhhhcccCCCCceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeec
Confidence 554444444444444444444 445555554444433333322 34444444332211 122222233333222221
Q ss_pred CCccccccchhHHhhcccccEEEcccccccccCCccccccCCCCCceecccCcccccCCCCCCCCceeecCCC-cccccc
Q 048006 398 NTGISDTIPDWFWNLSNKFSFLDLASNQIKGKLPNLSSRFGTSNPGIDISSNHFEGLIPPLPSNSSFLNLSKN-RFSGSI 476 (833)
Q Consensus 398 ~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~L~~L~l~~n-~l~~~~ 476 (833)
...+...- .+. .+....+.+.. .-.++.++++++ .+.+.+
T Consensus 234 -------------------------~~~~~~~~---------~l~--~~~~~~~~~l~---~l~l~~l~l~~~~~~~~~~ 274 (570)
T 2z63_A 234 -------------------------LGEFRNEG---------NLE--KFDKSALEGLC---NLTIEEFRLAYLDYYLDDI 274 (570)
T ss_dssp -------------------------EEECCCCS---------SCE--ECCTTTTGGGG---GSEEEEEEEEETTEEESCS
T ss_pred -------------------------cccccCch---------hhh--hcchhhhcccc---ccchhhhhhhcchhhhhhc
Confidence 11111000 000 00011111100 001233344433 333333
Q ss_pred cccccccCCcccEEEcCCCcCcCCCCCcccCCCCCcEEEccCCcccccCCCCccCcCCccEEEcccCcCccccCccccCC
Q 048006 477 SFLCSISGSKLTYVDLSSNLLSGKLPDCWWTFDSLVILNLENNSFSGRIPDSMGFLQNIQTLSLHNNRLTGELSSSFRNC 556 (833)
Q Consensus 477 ~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 556 (833)
+.... .+++|++|++++|.++ .+|..+..+ +|++|++++|.+. .+|. ..+++|++|++++|.+.+..+. ..+
T Consensus 275 ~~~~~-~l~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~-~l~~--~~l~~L~~L~l~~n~~~~~~~~--~~~ 346 (570)
T 2z63_A 275 IDLFN-CLTNVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFG-QFPT--LKLKSLKRLTFTSNKGGNAFSE--VDL 346 (570)
T ss_dssp TTTTG-GGTTCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCS-SCCB--CBCSSCCEEEEESCBSCCBCCC--CBC
T ss_pred hhhhc-CcCcccEEEecCccch-hhhhhhccC-CccEEeeccCccc-ccCc--ccccccCEEeCcCCcccccccc--ccC
Confidence 22211 2477888888888877 466677777 8888888888877 4443 4677888888888887766554 677
Q ss_pred CCCcEeccCCCccCCCC--CcchhhcCCccceEEecCCcccccccccccCCCCCCEEeccCCcCcccCC-cccccccccc
Q 048006 557 SQLRLLDLGKNALYGEI--PTWMGESLSNLIVLSLKSNKFHGKIPFQLCQLAFLQVLDLSLNNISGKIP-KCFNNFTAMT 633 (833)
Q Consensus 557 ~~L~~L~L~~n~l~~~~--p~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~ 633 (833)
++|++|++++|++.+.. |..+. .+++|++|++++|.+.+..+. +..+++|+.|++++|.+.+..| ..+.++++
T Consensus 347 ~~L~~L~l~~n~l~~~~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~-- 422 (570)
T 2z63_A 347 PSLEFLDLSRNGLSFKGCCSQSDF-GTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRN-- 422 (570)
T ss_dssp TTCCEEECCSSCCBEEEEEEHHHH-TCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTT--
T ss_pred CCCCEEeCcCCccCcccccccccc-ccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhhhcCCC--
Confidence 88888888888876332 44444 578888888888888754443 7788888888888888876555 34555544
Q ss_pred ccCCCCcccccceEEeeccCcchhccccCcccEEEccCCcCCCCCchhhhcccCCcEEECCCcccc-ccCCcccCCCCCC
Q 048006 634 QERSSDPTIKDKLMLTWKGSEREYRSTLGLVKSLELSNNNLNGAVPEEIMDLVGLVALNLSKNHLT-GQISPKIGQLKSL 712 (833)
Q Consensus 634 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~-~~~p~~l~~l~~L 712 (833)
|+.|++++|.+++..|..+..+++|++|++++|.++ +.+|..+..+++|
T Consensus 423 ------------------------------L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L 472 (570)
T 2z63_A 423 ------------------------------LIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNL 472 (570)
T ss_dssp ------------------------------CCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTC
T ss_pred ------------------------------CCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCC
Confidence 499999999999999999999999999999999998 6899999999999
Q ss_pred CEEeCCCCcCcccCCccccCCCCCCEEECcCCcCccCCCCc-cccCccccccccCCCCCCCCCC
Q 048006 713 DFLDLSRNQLVGGIPSSLSQLSGLSVMDLSYNNLSGKIPTV-TQLQSFNDTVYAGNPELCGLPL 775 (833)
Q Consensus 713 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~-~~~~~l~~~~~~gn~~lc~~~~ 775 (833)
++|++++|++++..|..+..+++|++|++++|++++.+|.. ..+..+..+.+.+||+.|+|+.
T Consensus 473 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~ 536 (570)
T 2z63_A 473 TFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 536 (570)
T ss_dssp CEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred CEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcc
Confidence 99999999999999999999999999999999999987764 5677888899999999998873
No 17
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=1.8e-46 Score=430.86 Aligned_cols=463 Identities=22% Similarity=0.236 Sum_probs=321.1
Q ss_pred CcEEEccCccccccccccccCCCCCcEEECcCCcccccccccccCCCCCcEEEccCCCCCchhhHHHhhcCCccccCCcc
Q 048006 241 FISIDLGFNQLQGSIPESFQHMVYLEHLRLSFNELEGGIPKFFGNMCSLITLNLSNNKLSGQLSEIIQNLSSGCLENSLK 320 (833)
Q Consensus 241 L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~~~~~~L~ 320 (833)
+++|++++|.+++..|..|.++++|++|++++|++++..|..|..+++|++|++++|++++..+..++.++ +|+
T Consensus 28 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~------~L~ 101 (549)
T 2z81_A 28 MKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLS------SLK 101 (549)
T ss_dssp CCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCT------TCC
T ss_pred ccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCC------CCc
Confidence 55555555555555555555666666666666666555555556666666666666666655555555555 566
Q ss_pred EEEcccccccccC-hhhhcCCCCCCEEECcCCcccccc-CCCccCCccccEEEccCccCCCCCChhhcccccccEEeecC
Q 048006 321 SLYLENSLTGVIS-ESFFSNISNLKELHLANNPLVLKL-SHDWVPPFQLIIISLSSCKIGPHFPKWLQTQNQIELLDISN 398 (833)
Q Consensus 321 ~L~L~~~~~~~i~-~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~ 398 (833)
+|++++|.+..++ +..|.++++|++|++++|.+.+.. +..+..+++|++|++++|.+++..|..+..+++|++|++++
T Consensus 102 ~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~ 181 (549)
T 2z81_A 102 YLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHL 181 (549)
T ss_dssp EEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEEC
T ss_pred EEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEeccc
Confidence 6666555444321 124677777777777777643333 35677777777777877777777777888888888888888
Q ss_pred CccccccchhHHhhcccccEEEcccccccccC--CccccccCCCCCceecccCcccccCCCCCCCCceeecCCCcccccc
Q 048006 399 TGISDTIPDWFWNLSNKFSFLDLASNQIKGKL--PNLSSRFGTSNPGIDISSNHFEGLIPPLPSNSSFLNLSKNRFSGSI 476 (833)
Q Consensus 399 n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~~--p~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~ 476 (833)
|.+. .+|..+....++|++|++++|++++.. |...... ..+++.|++++|.+.+..
T Consensus 182 n~~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~---------------------~~~L~~L~l~~n~l~~~~ 239 (549)
T 2z81_A 182 SESA-FLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEV---------------------SSPMKKLAFRGSVLTDES 239 (549)
T ss_dssp SBST-THHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCC---------------------CCCCCEEEEESCEEEHHH
T ss_pred Cccc-ccchhhHhhcccccEEEccCCccccccccccchhhh---------------------hhcccceeccccccchhH
Confidence 8775 445555444567888888888887532 1111111 234555555555544432
Q ss_pred cccc---cccCCcccEEEcCCCcCcCCC------CCcccCCCCCcEEEccCCcccccC-----CCCccCcCCccEEEccc
Q 048006 477 SFLC---SISGSKLTYVDLSSNLLSGKL------PDCWWTFDSLVILNLENNSFSGRI-----PDSMGFLQNIQTLSLHN 542 (833)
Q Consensus 477 ~~~~---~~~~~~L~~L~ls~n~l~~~~------~~~~~~l~~L~~L~Ls~N~l~~~~-----~~~~~~l~~L~~L~L~~ 542 (833)
+... ...+++|+.+++++|.+.+.. ...+..+++|+.|++.++.+.... +..+...++|++|++++
T Consensus 240 ~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~ 319 (549)
T 2z81_A 240 FNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVEN 319 (549)
T ss_dssp HHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEES
T ss_pred HHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEecc
Confidence 2111 012467778888887766531 123566778888998888765321 11123356899999999
Q ss_pred CcCccccCccc-cCCCCCcEeccCCCccCCCCCcc--hhhcCCccceEEecCCccccccc--ccccCCCCCCEEeccCCc
Q 048006 543 NRLTGELSSSF-RNCSQLRLLDLGKNALYGEIPTW--MGESLSNLIVLSLKSNKFHGKIP--FQLCQLAFLQVLDLSLNN 617 (833)
Q Consensus 543 n~l~~~~~~~~-~~l~~L~~L~L~~n~l~~~~p~~--~~~~l~~L~~L~L~~N~l~~~~~--~~l~~l~~L~~L~Ls~N~ 617 (833)
|++. .+|..+ ..+++|++|++++|++.+.+|.. ....+++|++|++++|++++..+ ..+..+++|++|++++|+
T Consensus 320 n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~ 398 (549)
T 2z81_A 320 SKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNT 398 (549)
T ss_dssp SCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCC
T ss_pred Cccc-cCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCC
Confidence 9987 556555 67999999999999998766532 12358899999999999986532 458889999999999999
Q ss_pred CcccCCccccccccccccCCCCcccccceEEeeccCcchhccccCcccEEEccCCcCCCCCchhhhcccCCcEEECCCcc
Q 048006 618 ISGKIPKCFNNFTAMTQERSSDPTIKDKLMLTWKGSEREYRSTLGLVKSLELSNNNLNGAVPEEIMDLVGLVALNLSKNH 697 (833)
Q Consensus 618 l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~ 697 (833)
++ .+|..+..+++| ++|++++|+++ .+|..+ .++|++|+|++|+
T Consensus 399 l~-~lp~~~~~~~~L--------------------------------~~L~Ls~N~l~-~l~~~~--~~~L~~L~Ls~N~ 442 (549)
T 2z81_A 399 FH-PMPDSCQWPEKM--------------------------------RFLNLSSTGIR-VVKTCI--PQTLEVLDVSNNN 442 (549)
T ss_dssp CC-CCCSCCCCCTTC--------------------------------CEEECTTSCCS-CCCTTS--CTTCSEEECCSSC
T ss_pred Cc-cCChhhcccccc--------------------------------cEEECCCCCcc-cccchh--cCCceEEECCCCC
Confidence 98 567766665555 99999999998 455443 2689999999999
Q ss_pred ccccCCcccCCCCCCCEEeCCCCcCcccCCccccCCCCCCEEECcCCcCccCCCCc-cccCccccccccCCCCCCCCC
Q 048006 698 LTGQISPKIGQLKSLDFLDLSRNQLVGGIPSSLSQLSGLSVMDLSYNNLSGKIPTV-TQLQSFNDTVYAGNPELCGLP 774 (833)
Q Consensus 698 l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~-~~~~~l~~~~~~gn~~lc~~~ 774 (833)
+++.+ ..+++|++|+|++|+++ .+|. ...+++|++|++++|++++.+|.. ..+..+..+++.|||+.|+|+
T Consensus 443 l~~~~----~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 514 (549)
T 2z81_A 443 LDSFS----LFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 514 (549)
T ss_dssp CSCCC----CCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred hhhhc----ccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCc
Confidence 99653 57899999999999999 6776 567899999999999999988863 677888889999999999886
No 18
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=5.7e-46 Score=423.44 Aligned_cols=456 Identities=22% Similarity=0.196 Sum_probs=322.3
Q ss_pred CEEEccCCcCCCCCCCcccccccCCcEEEccCccccccccccccCCCCCcEEECcCCcccccccccccCCCCCcEEEccC
Q 048006 217 ETLVLSDNNLTSSIYPWLPNISSIFISIDLGFNQLQGSIPESFQHMVYLEHLRLSFNELEGGIPKFFGNMCSLITLNLSN 296 (833)
Q Consensus 217 ~~L~Ls~n~l~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~ 296 (833)
++|++++|.++ .+|..++ ++ +++|++++|.+++..|..|.++++|++|++++|++++..|..|+++++|++|++++
T Consensus 3 ~~l~ls~n~l~-~ip~~~~--~~-L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~ 78 (520)
T 2z7x_B 3 FLVDRSKNGLI-HVPKDLS--QK-TTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSH 78 (520)
T ss_dssp CEEECTTSCCS-SCCCSCC--TT-CSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCS
T ss_pred ceEecCCCCcc-ccccccc--cc-ccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCC
Confidence 46888888888 4666665 44 88888888888887777888888888888888888887788888888888888888
Q ss_pred CCCCchhhHHHhhcCCccccCCccEEEcccccccccC-hhhhcCCCCCCEEECcCCccccccCCCccCCccc--cEEEcc
Q 048006 297 NKLSGQLSEIIQNLSSGCLENSLKSLYLENSLTGVIS-ESFFSNISNLKELHLANNPLVLKLSHDWVPPFQL--IIISLS 373 (833)
Q Consensus 297 n~l~~~~~~~l~~l~~~~~~~~L~~L~L~~~~~~~i~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L--~~L~L~ 373 (833)
|++++ +|.. .++ +|++|++++|.+..++ +..|+++++|++|++++|.+.+ ..+..+++| ++|+++
T Consensus 79 N~l~~-lp~~--~l~------~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~ 146 (520)
T 2z7x_B 79 NKLVK-ISCH--PTV------NLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLV 146 (520)
T ss_dssp SCCCE-EECC--CCC------CCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEE
T ss_pred Cceee-cCcc--ccC------CccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEee
Confidence 88874 3432 445 6777777655555432 2356666666666666666654 233344444 555555
Q ss_pred CccC--CCCCChhhcccccccEEeecCCccccccchhHHhhcccccEEEcccccccccCCccccccCCCCCceecccCc-
Q 048006 374 SCKI--GPHFPKWLQTQNQIELLDISNTGISDTIPDWFWNLSNKFSFLDLASNQIKGKLPNLSSRFGTSNPGIDISSNH- 450 (833)
Q Consensus 374 ~~~l--~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~~l~~l~l~~n~- 450 (833)
+|.+ .+..|..+..+. .+...+++++|.+.+.++......++.++.+++++|.
T Consensus 147 ~n~l~~~~~~~~~l~~l~------------------------~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~ 202 (520)
T 2z7x_B 147 LGETYGEKEDPEGLQDFN------------------------TESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLE 202 (520)
T ss_dssp ECTTTTSSCCTTTTTTCC------------------------EEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCS
T ss_pred cccccccccccccccccc------------------------cceEEEEeccCcchhhhhhhhhhcccceeecccccccc
Confidence 5555 444444444433 2222334444444444443333334444444444443
Q ss_pred ------ccccCCC--CCCCCceeecCCCccccccccccc--ccCCcccEEEcCCCcCcCCCCCcc-----cCCCCCcEEE
Q 048006 451 ------FEGLIPP--LPSNSSFLNLSKNRFSGSISFLCS--ISGSKLTYVDLSSNLLSGKLPDCW-----WTFDSLVILN 515 (833)
Q Consensus 451 ------l~~~~~~--~~~~L~~L~l~~n~l~~~~~~~~~--~~~~~L~~L~ls~n~l~~~~~~~~-----~~l~~L~~L~ 515 (833)
+.+.++. ..++++.|++++|.+.+....... ...++|++|++++|.+++.+|..+ ..+++|+.++
T Consensus 203 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~ 282 (520)
T 2z7x_B 203 DNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQ 282 (520)
T ss_dssp TTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEE
T ss_pred ccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEecc
Confidence 2222221 134566666666665543211110 013689999999999988888887 8889999999
Q ss_pred ccCCcccccCC-CCccCc---CCccEEEcccCcCccccCccccCCCCCcEeccCCCccCCCCCcchhhcCCccceEEecC
Q 048006 516 LENNSFSGRIP-DSMGFL---QNIQTLSLHNNRLTGELSSSFRNCSQLRLLDLGKNALYGEIPTWMGESLSNLIVLSLKS 591 (833)
Q Consensus 516 Ls~N~l~~~~~-~~~~~l---~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~ 591 (833)
+++|.+ .+| ..+..+ .+|+.|++++|.+.... .+..+++|++|++++|++++.+|..+. .+++|++|++++
T Consensus 283 l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~L~~ 357 (520)
T 2z7x_B 283 VVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHML--CPSKISPFLHLDFSNNLLTDTVFENCG-HLTELETLILQM 357 (520)
T ss_dssp EEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCC-CCSSCCEEECCS
T ss_pred ccccce--ecchhhhhcccccCceeEEEcCCCcccccc--chhhCCcccEEEeECCccChhhhhhhc-cCCCCCEEEccC
Confidence 999988 444 334443 67999999999887432 136788999999999999877887776 689999999999
Q ss_pred Ccccc--cccccccCCCCCCEEeccCCcCcccCCcc-ccccccccccCCCCcccccceEEeeccCcchhccccCcccEEE
Q 048006 592 NKFHG--KIPFQLCQLAFLQVLDLSLNNISGKIPKC-FNNFTAMTQERSSDPTIKDKLMLTWKGSEREYRSTLGLVKSLE 668 (833)
Q Consensus 592 N~l~~--~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~-~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ 668 (833)
|++++ .+|..+..+++|++|++++|++.+.+|.. +..+++| +.|+
T Consensus 358 N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L--------------------------------~~L~ 405 (520)
T 2z7x_B 358 NQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSL--------------------------------LSLN 405 (520)
T ss_dssp SCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTC--------------------------------CEEE
T ss_pred CccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccC--------------------------------CEEE
Confidence 99986 56677889999999999999998756543 5544444 8999
Q ss_pred ccCCcCCCCCchhhhcccCCcEEECCCccccccCCcccCCCCCCCEEeCCCCcCcccCCcc-ccCCCCCCEEECcCCcCc
Q 048006 669 LSNNNLNGAVPEEIMDLVGLVALNLSKNHLTGQISPKIGQLKSLDFLDLSRNQLVGGIPSS-LSQLSGLSVMDLSYNNLS 747 (833)
Q Consensus 669 Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~-l~~l~~L~~L~ls~N~l~ 747 (833)
+++|++++.+|..+. ++|++|+|++|+++ .+|..+..+++|++|+|++|++++ +|.. +..+++|++|++++|+++
T Consensus 406 Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~l~~L~~L~l~~N~~~ 481 (520)
T 2z7x_B 406 MSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKS-VPDGIFDRLTSLQKIWLHTNPWD 481 (520)
T ss_dssp CCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCBC
T ss_pred CcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCc-cCHHHhccCCcccEEECcCCCCc
Confidence 999999887776654 78999999999999 788888899999999999999995 5554 889999999999999999
Q ss_pred cCCCCc
Q 048006 748 GKIPTV 753 (833)
Q Consensus 748 g~ip~~ 753 (833)
|.++..
T Consensus 482 c~c~~~ 487 (520)
T 2z7x_B 482 CSCPRI 487 (520)
T ss_dssp CCHHHH
T ss_pred ccCCch
Confidence 987743
No 19
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.7e-44 Score=411.35 Aligned_cols=461 Identities=20% Similarity=0.197 Sum_probs=292.6
Q ss_pred EEECCCCCCCCCCcceecCccccCCCCCCEEeCCCCCCCCCCccccccCCCCCCEEEccCCCCCCCCCcccCCcccccee
Q 048006 62 LLDLQPIDFDSFPLRGTISPALLKLHDLRHLNLSFNDFSGSPIPEFIGSLSKLRYLDLFGTVFAGPIPPQLGNLSRLQHL 141 (833)
Q Consensus 62 ~l~L~~~~~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L 141 (833)
.+|+++ +.++ .+|..+. ++|++|+|++|.+++. .|..|..+++|++|+|++|.+.+..|..|+++++|++|
T Consensus 4 ~l~ls~-----n~l~-~ip~~~~--~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 74 (520)
T 2z7x_B 4 LVDRSK-----NGLI-HVPKDLS--QKTTILNISQNYISEL-WTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYL 74 (520)
T ss_dssp EEECTT-----SCCS-SCCCSCC--TTCSEEECCSSCCCCC-CHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEE
T ss_pred eEecCC-----CCcc-ccccccc--ccccEEECCCCccccc-ChhhccccccccEEecCCCccCCcChHHhhcccCCCEE
Confidence 577887 5666 4666665 7899999999998875 66788889999999999999887778888899999999
Q ss_pred cccCccCCCCCCcccccCCCCCcEEecCCCCCCCCchhHHhhcCCCCCCEEEccCCCCCCCCCccccccccCCCC--CEE
Q 048006 142 DLGSNYLFSTGNLDWLSHLSYLRYLNLDESNLANSSDWFQVIGKLHSLKTLSLHSCYLPPVIPLSLNHLNSSTSL--ETL 219 (833)
Q Consensus 142 ~Ls~n~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L--~~L 219 (833)
+|++|.+.. ++.. .+++|++|++++|.+++. .+|..++++++|++|++++|.+.+. .+.. +++| ++|
T Consensus 75 ~Ls~N~l~~---lp~~-~l~~L~~L~L~~N~l~~~-~~p~~~~~l~~L~~L~L~~n~l~~~-----~~~~-l~~L~L~~L 143 (520)
T 2z7x_B 75 DLSHNKLVK---ISCH-PTVNLKHLDLSFNAFDAL-PICKEFGNMSQLKFLGLSTTHLEKS-----SVLP-IAHLNISKV 143 (520)
T ss_dssp ECCSSCCCE---EECC-CCCCCSEEECCSSCCSSC-CCCGGGGGCTTCCEEEEEESSCCGG-----GGGG-GTTSCEEEE
T ss_pred ecCCCceee---cCcc-ccCCccEEeccCCccccc-cchhhhccCCcceEEEecCcccchh-----hccc-cccceeeEE
Confidence 999988753 2222 788888888888888764 2456788888888888888887652 2222 2666 888
Q ss_pred EccCCcC--CCCCCCcccccccCCcEEEccCccccccccc-cccCCCCCcEEECcCCc-------ccccccccccCCCCC
Q 048006 220 VLSDNNL--TSSIYPWLPNISSIFISIDLGFNQLQGSIPE-SFQHMVYLEHLRLSFNE-------LEGGIPKFFGNMCSL 289 (833)
Q Consensus 220 ~Ls~n~l--~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~p~-~~~~l~~L~~L~L~~n~-------l~~~~p~~l~~l~~L 289 (833)
++++|.+ .+..|..+..+......+++++|.+.+.++. .+..+++|+.|++++|. +.+.+| .++.+++|
T Consensus 144 ~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L 222 (520)
T 2z7x_B 144 LLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKL 222 (520)
T ss_dssp EEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTC
T ss_pred EeecccccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hhccccch
Confidence 8888877 6666776666553244566777776654443 45566677777777665 554444 56666666
Q ss_pred cEEEccCCCCCchhhHHHhhcCCccccCCccEEEcccccccccChhhhcCCCCCCEEECcCCccccccCCCccCCccccE
Q 048006 290 ITLNLSNNKLSGQLSEIIQNLSSGCLENSLKSLYLENSLTGVISESFFSNISNLKELHLANNPLVLKLSHDWVPPFQLII 369 (833)
Q Consensus 290 ~~L~Ls~n~l~~~~~~~l~~l~~~~~~~~L~~L~L~~~~~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~ 369 (833)
++|++++|.+++..+..+... ...++|++|++++|.+.+
T Consensus 223 ~~L~l~~~~l~~~~~~~~~~~---------------------------~~~~~L~~L~l~~n~l~~-------------- 261 (520)
T 2z7x_B 223 SNLTLNNIETTWNSFIRILQL---------------------------VWHTTVWYFSISNVKLQG-------------- 261 (520)
T ss_dssp CEEEEEEEEEEHHHHHHHHHH---------------------------HHTSSCSEEEEEEEEEES--------------
T ss_pred hhccccccccCHHHHHHHHHH---------------------------hhhCcccEEEeecccccC--------------
Confidence 666666666654433222110 012355555555555443
Q ss_pred EEccCccCCCCCChhh-----cccccccEEeecCCccccccc-hhHHhhcccccEEEcccccccccCCccccccCCCCCc
Q 048006 370 ISLSSCKIGPHFPKWL-----QTQNQIELLDISNTGISDTIP-DWFWNLSNKFSFLDLASNQIKGKLPNLSSRFGTSNPG 443 (833)
Q Consensus 370 L~L~~~~l~~~~~~~l-----~~l~~L~~L~Ls~n~i~~~~~-~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~~l~~ 443 (833)
.+|.++ ..+++|+.+++++|.+ .+| ..+.....+
T Consensus 262 ----------~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~---------------------------- 301 (520)
T 2z7x_B 262 ----------QLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSN---------------------------- 301 (520)
T ss_dssp ----------CCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHT----------------------------
T ss_pred ----------ccccchhhcccccCceeEeccccccce--ecchhhhhccccc----------------------------
Confidence 344444 5667777777777766 334 333332110
Q ss_pred eecccCcccccCCCCCCCCceeecCCCcccccccccccccCCcccEEEcCCCcCcCCCCCcccCCCCCcEEEccCCcccc
Q 048006 444 IDISSNHFEGLIPPLPSNSSFLNLSKNRFSGSISFLCSISGSKLTYVDLSSNLLSGKLPDCWWTFDSLVILNLENNSFSG 523 (833)
Q Consensus 444 l~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 523 (833)
.+|+.|++++|.+.... .+..+++|++|++++|++++
T Consensus 302 -----------------------------------------~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~ 338 (520)
T 2z7x_B 302 -----------------------------------------MNIKNFTVSGTRMVHML--CPSKISPFLHLDFSNNLLTD 338 (520)
T ss_dssp -----------------------------------------CCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCT
T ss_pred -----------------------------------------CceeEEEcCCCcccccc--chhhCCcccEEEeECCccCh
Confidence 23444444444433211 11345555666666666655
Q ss_pred cCCCCccCcCCccEEEcccCcCcc--ccCccccCCCCCcEeccCCCccCCCCCcchhhcCCccceEEecCCccccccccc
Q 048006 524 RIPDSMGFLQNIQTLSLHNNRLTG--ELSSSFRNCSQLRLLDLGKNALYGEIPTWMGESLSNLIVLSLKSNKFHGKIPFQ 601 (833)
Q Consensus 524 ~~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~~~~ 601 (833)
.+|..++.+++|++|++++|++++ .+|..+..+++|++|++++|++.+.+|...
T Consensus 339 ~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~------------------------ 394 (520)
T 2z7x_B 339 TVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGD------------------------ 394 (520)
T ss_dssp TTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCS------------------------
T ss_pred hhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccch------------------------
Confidence 555555556666666666666654 334445555666666666665554344432
Q ss_pred ccCCCCCCEEeccCCcCcccCCccccccccccccCCCCcccccceEEeeccCcchhccccCcccEEEccCCcCCCCCchh
Q 048006 602 LCQLAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKDKLMLTWKGSEREYRSTLGLVKSLELSNNNLNGAVPEE 681 (833)
Q Consensus 602 l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~ 681 (833)
+..+++|+.|++++|++++..|..+. + +|+.|++++|+++ .+|..
T Consensus 395 ~~~l~~L~~L~Ls~N~l~~~~~~~l~--~--------------------------------~L~~L~Ls~N~l~-~ip~~ 439 (520)
T 2z7x_B 395 CSWTKSLLSLNMSSNILTDTIFRCLP--P--------------------------------RIKVLDLHSNKIK-SIPKQ 439 (520)
T ss_dssp CCCCTTCCEEECCSSCCCGGGGGSCC--T--------------------------------TCCEEECCSSCCC-CCCGG
T ss_pred hccCccCCEEECcCCCCCcchhhhhc--c--------------------------------cCCEEECCCCccc-ccchh
Confidence 33445555555555555544443321 1 2377777777777 67777
Q ss_pred hhcccCCcEEECCCccccccCCcc-cCCCCCCCEEeCCCCcCcccCC
Q 048006 682 IMDLVGLVALNLSKNHLTGQISPK-IGQLKSLDFLDLSRNQLVGGIP 727 (833)
Q Consensus 682 l~~l~~L~~L~Ls~N~l~~~~p~~-l~~l~~L~~L~Ls~N~l~~~~p 727 (833)
+..+++|++|+|++|++++ +|.. +..+++|+.|++++|++++..+
T Consensus 440 ~~~l~~L~~L~L~~N~l~~-l~~~~~~~l~~L~~L~l~~N~~~c~c~ 485 (520)
T 2z7x_B 440 VVKLEALQELNVASNQLKS-VPDGIFDRLTSLQKIWLHTNPWDCSCP 485 (520)
T ss_dssp GGGCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred hhcCCCCCEEECCCCcCCc-cCHHHhccCCcccEEECcCCCCcccCC
Confidence 7788889999999999884 5554 8889999999999999886543
No 20
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=3.5e-45 Score=424.42 Aligned_cols=446 Identities=18% Similarity=0.244 Sum_probs=325.0
Q ss_pred CcEEEccCccccccccccccCCCCCcEEECcCCccc------c------cccccccCCCCCcEEEccCCCCCchhhHHHh
Q 048006 241 FISIDLGFNQLQGSIPESFQHMVYLEHLRLSFNELE------G------GIPKFFGNMCSLITLNLSNNKLSGQLSEIIQ 308 (833)
Q Consensus 241 L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~------~------~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~ 308 (833)
++.|+|+++.+.|.+|.+++++++|++|+|++|.+. + .+|... +..|+ +++++|.+.+.+|..+.
T Consensus 83 V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~--~~~l~-l~l~~~~l~~~~~~~~~ 159 (636)
T 4eco_A 83 VTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ--KQKMR-MHYQKTFVDYDPREDFS 159 (636)
T ss_dssp EEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH--HHHHH-THHHHHHTCCCGGGGSC
T ss_pred EEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHH--HHHHH-hhHHHhhhccCchhhHH
Confidence 667777777777777777777777777777777651 1 223222 34555 66777777666665444
Q ss_pred hcCC---------c----cccCCccEEEc--ccccccccChhhhcCCCCCCEEECcCCccccc-----------------
Q 048006 309 NLSS---------G----CLENSLKSLYL--ENSLTGVISESFFSNISNLKELHLANNPLVLK----------------- 356 (833)
Q Consensus 309 ~l~~---------~----~~~~~L~~L~L--~~~~~~~i~~~~~~~l~~L~~L~L~~n~l~~~----------------- 356 (833)
.+.. . .....++.+.+ .+|.+..+|. .|+++++|++|++++|.+++.
T Consensus 160 ~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~ip~-~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ 238 (636)
T 4eco_A 160 DLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSK-AVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQY 238 (636)
T ss_dssp HHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECG-GGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHH
T ss_pred HHHHHHhhcCccccccccccccchhhhhhccccCCCccCCH-HHhcccCCCEEECcCCccccccccccccccccchhccc
Confidence 2110 0 00002333444 2455555887 589999999999999999885
Q ss_pred cCCCcc--CCccccEEEccCccCCCCCChhhcccccccEEeecCCc-ccc-ccchhHHhh-----cccccEEEccccccc
Q 048006 357 LSHDWV--PPFQLIIISLSSCKIGPHFPKWLQTQNQIELLDISNTG-ISD-TIPDWFWNL-----SNKFSFLDLASNQIK 427 (833)
Q Consensus 357 ~~~~~~--~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~n~-i~~-~~~~~~~~~-----~~~L~~L~L~~n~l~ 427 (833)
+|..+. .+++|++|++++|.+.+.+|..+.++++|++|++++|+ +++ .+|..+..+ .++|++|++++|+++
T Consensus 239 ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~ 318 (636)
T 4eco_A 239 KTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK 318 (636)
T ss_dssp TTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS
T ss_pred CchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC
Confidence 788888 89999999999999999999999999999999999998 888 788888765 246777777777776
Q ss_pred ccCCc--cccccCCCCCceecccCcccccCCCCCCCCceeecCCCcccccccccccccCCcccEEEcCCCcCcCCCCCcc
Q 048006 428 GKLPN--LSSRFGTSNPGIDISSNHFEGLIPPLPSNSSFLNLSKNRFSGSISFLCSISGSKLTYVDLSSNLLSGKLPDCW 505 (833)
Q Consensus 428 ~~~p~--~~~~~~~~l~~l~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~ 505 (833)
.+|. . .. .+++|++|++++|.++|.+| .|
T Consensus 319 -~ip~~~~-l~----------------------------------------------~l~~L~~L~L~~N~l~g~ip-~~ 349 (636)
T 4eco_A 319 -TFPVETS-LQ----------------------------------------------KMKKLGMLECLYNQLEGKLP-AF 349 (636)
T ss_dssp -SCCCHHH-HT----------------------------------------------TCTTCCEEECCSCCCEEECC-CC
T ss_pred -ccCchhh-hc----------------------------------------------cCCCCCEEeCcCCcCccchh-hh
Confidence 4443 1 01 13667777777777776666 67
Q ss_pred cCCCCCcEEEccCCcccccCCCCccCcCC-ccEEEcccCcCccccCccccCCC--CCcEeccCCCccCCCCCcchhh---
Q 048006 506 WTFDSLVILNLENNSFSGRIPDSMGFLQN-IQTLSLHNNRLTGELSSSFRNCS--QLRLLDLGKNALYGEIPTWMGE--- 579 (833)
Q Consensus 506 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~-L~~L~L~~n~l~~~~~~~~~~l~--~L~~L~L~~n~l~~~~p~~~~~--- 579 (833)
..+++|++|++++|+++ .+|..+..+++ |++|++++|+++ .+|..+..++ +|++|++++|++.+.+|..+..
T Consensus 350 ~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~ 427 (636)
T 4eco_A 350 GSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDP 427 (636)
T ss_dssp EEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCS
T ss_pred CCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhccccc
Confidence 77777777777777777 66666777777 777777777777 5666665544 6777777777777666655430
Q ss_pred ---cCCccceEEecCCcccccccccccCCCCCCEEeccCCcCcccCCccc-cccccccccCCCCcccccceEEeeccCcc
Q 048006 580 ---SLSNLIVLSLKSNKFHGKIPFQLCQLAFLQVLDLSLNNISGKIPKCF-NNFTAMTQERSSDPTIKDKLMLTWKGSER 655 (833)
Q Consensus 580 ---~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~-~~l~~L~~l~~~~~~~~~~~~~~~~~~~~ 655 (833)
.+++|++|++++|+++...+..+..+++|+.|++++|+++ .+|..+ .....
T Consensus 428 ~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~------------------------ 482 (636)
T 4eco_A 428 TPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENE------------------------ 482 (636)
T ss_dssp SCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTE------------------------
T ss_pred ccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC-CcCHHHhccccc------------------------
Confidence 2567888888888877433334556788888888888887 444432 21110
Q ss_pred hhccccCcccEEEccCCcCCCCCchhhh--cccCCcEEECCCccccccCCcccCCCCCCCEEeC------CCCcCcccCC
Q 048006 656 EYRSTLGLVKSLELSNNNLNGAVPEEIM--DLVGLVALNLSKNHLTGQISPKIGQLKSLDFLDL------SRNQLVGGIP 727 (833)
Q Consensus 656 ~~~~~~~~L~~L~Ls~n~l~~~~p~~l~--~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L------s~N~l~~~~p 727 (833)
....+++|+.|+|++|+++ .+|..+. .+++|++|+|++|++++ +|..+..+++|+.|+| ++|++.+.+|
T Consensus 483 -~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p 559 (636)
T 4eco_A 483 -NFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWP 559 (636)
T ss_dssp -ECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCC
T ss_pred -cccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccCh
Confidence 0112335699999999999 7888887 99999999999999997 8999999999999999 5688999999
Q ss_pred ccccCCCCCCEEECcCCcCccCCCCccccCccccccccCCCCCC
Q 048006 728 SSLSQLSGLSVMDLSYNNLSGKIPTVTQLQSFNDTVYAGNPELC 771 (833)
Q Consensus 728 ~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~l~~~~~~gn~~lc 771 (833)
..+..+++|++|++++|++ +.+|... ...+..+++.+||..|
T Consensus 560 ~~l~~l~~L~~L~Ls~N~l-~~ip~~~-~~~L~~L~Ls~N~l~~ 601 (636)
T 4eco_A 560 EGITLCPSLTQLQIGSNDI-RKVNEKI-TPNISVLDIKDNPNIS 601 (636)
T ss_dssp TTGGGCSSCCEEECCSSCC-CBCCSCC-CTTCCEEECCSCTTCE
T ss_pred HHHhcCCCCCEEECCCCcC-CccCHhH-hCcCCEEECcCCCCcc
Confidence 9999999999999999999 7888753 3778888999999987
No 21
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=2.1e-43 Score=413.67 Aligned_cols=512 Identities=20% Similarity=0.177 Sum_probs=321.4
Q ss_pred CCCCEEEccCCcCCCCCCCcccccccCCcEEEccCccccccccccccCCCCCcEEECcCCcccccccccccCCCCCcEEE
Q 048006 214 TSLETLVLSDNNLTSSIYPWLPNISSIFISIDLGFNQLQGSIPESFQHMVYLEHLRLSFNELEGGIPKFFGNMCSLITLN 293 (833)
Q Consensus 214 ~~L~~L~Ls~n~l~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 293 (833)
+++++|+|++|++++..+.+|.++++ |++|+|++|+|++..|.+|.++++|++|+|++|++++..+.+|.++++|++|+
T Consensus 52 ~~~~~LdLs~N~i~~l~~~~f~~l~~-L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~ 130 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRHLGSYSFFSFPE-LQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV 130 (635)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTT-CCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEE
T ss_pred cCCCEEEeeCCCCCCCCHHHHhCCCC-CCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEE
Confidence 46677777777776665666666666 67777777776666666666677777777777776665556666677777777
Q ss_pred ccCCCCCchhhHHHhhcCCccccCCccEEEcccccccccC-hhhhcCCCCCCEEECcCCccccccCCCccCCcc----cc
Q 048006 294 LSNNKLSGQLSEIIQNLSSGCLENSLKSLYLENSLTGVIS-ESFFSNISNLKELHLANNPLVLKLSHDWVPPFQ----LI 368 (833)
Q Consensus 294 Ls~n~l~~~~~~~l~~l~~~~~~~~L~~L~L~~~~~~~i~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~----L~ 368 (833)
+++|++++..+..|++++ +|++|++++|.+..++ +..+..+++|++|++++|++.+..+..+..+.+ ..
T Consensus 131 Ls~N~l~~l~~~~~~~L~------~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~ 204 (635)
T 4g8a_A 131 AVETNLASLENFPIGHLK------TLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNL 204 (635)
T ss_dssp CTTSCCCCSTTCCCTTCT------TCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCC
T ss_pred CCCCcCCCCChhhhhcCc------ccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhh
Confidence 777766666555566666 6666666555554432 234566666666666666666655555544332 23
Q ss_pred EEEccCccCCCCCChhhcccccccEEeecCCccccccchhHHhhcccccEEEccccccccc--CCcc---ccccCCCCCc
Q 048006 369 IISLSSCKIGPHFPKWLQTQNQIELLDISNTGISDTIPDWFWNLSNKFSFLDLASNQIKGK--LPNL---SSRFGTSNPG 443 (833)
Q Consensus 369 ~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~--~p~~---~~~~~~~l~~ 443 (833)
.++++.|.+....+..+. ...++.+++.+|......+.........++...+..+..... +... .......+..
T Consensus 205 ~~~ls~n~l~~i~~~~~~-~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~ 283 (635)
T 4g8a_A 205 SLDLSLNPMNFIQPGAFK-EIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTI 283 (635)
T ss_dssp EEECTTCCCCEECTTTTT-TCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEE
T ss_pred hhhcccCcccccCccccc-chhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhh
Confidence 455666666544333332 233455666665544333222222222444444332222111 0000 0000111111
Q ss_pred eecccCccc----ccCC--CCCCCCceeecCCCcccccccccccccCCcccEEEcCCCcCcCCCCCcccCCCCCcEEEcc
Q 048006 444 IDISSNHFE----GLIP--PLPSNSSFLNLSKNRFSGSISFLCSISGSKLTYVDLSSNLLSGKLPDCWWTFDSLVILNLE 517 (833)
Q Consensus 444 l~l~~n~l~----~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls 517 (833)
.++..+... +... ....+++.+.+.++.+........ ...++.|++++|.+....+ ..+..|+.+++.
T Consensus 284 ~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~---~~~L~~L~l~~~~~~~~~~---~~l~~L~~l~l~ 357 (635)
T 4g8a_A 284 EEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSY---NFGWQHLELVNCKFGQFPT---LKLKSLKRLTFT 357 (635)
T ss_dssp EEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGS---CCCCSEEEEESCEESSCCC---CBCTTCCEEEEE
T ss_pred hhhhhhhhcccccchhhhhhhhccccccccccccccccccccc---chhhhhhhcccccccCcCc---ccchhhhhcccc
Confidence 222211111 1111 113455566666665544332211 3567777777777664433 234566777777
Q ss_pred CCcccccCCCCccCcCCccEEEcccCcCc--cccCccccCCCCCcEeccCCCccCCCCCcchhhcCCccceEEecCCccc
Q 048006 518 NNSFSGRIPDSMGFLQNIQTLSLHNNRLT--GELSSSFRNCSQLRLLDLGKNALYGEIPTWMGESLSNLIVLSLKSNKFH 595 (833)
Q Consensus 518 ~N~l~~~~~~~~~~l~~L~~L~L~~n~l~--~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~ 595 (833)
.|.+.... ....+++|+.|++++|.+. +..+..+..+.+|+++++..|.+. .++..+. .+++|+.++++.|...
T Consensus 358 ~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~-~~~~~~~-~l~~L~~l~l~~~~~~ 433 (635)
T 4g8a_A 358 SNKGGNAF--SEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVI-TMSSNFL-GLEQLEHLDFQHSNLK 433 (635)
T ss_dssp SCCSCCBC--CCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEE-EECSCCT-TCTTCCEEECTTSEEE
T ss_pred cccCCCCc--ccccccccccchhhccccccccccccchhhhhhhhhhhccccccc-ccccccc-ccccccchhhhhcccc
Confidence 77665332 2345677777777777765 334555566677777777777765 3343333 4677777777777665
Q ss_pred cccc-ccccCCCCCCEEeccCCcCcccCCccccccccccccCCCCcccccceEEeeccCcchhccccCcccEEEccCCcC
Q 048006 596 GKIP-FQLCQLAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKDKLMLTWKGSEREYRSTLGLVKSLELSNNNL 674 (833)
Q Consensus 596 ~~~~-~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l 674 (833)
...+ ..+..+++++.+++++|.+.+..|..+..++.+ +.|++++|.+
T Consensus 434 ~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L--------------------------------~~L~Ls~N~~ 481 (635)
T 4g8a_A 434 QMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSL--------------------------------EVLKMAGNSF 481 (635)
T ss_dssp STTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTC--------------------------------CEEECTTCEE
T ss_pred ccccccccccccccccccccccccccccccccccchhh--------------------------------hhhhhhhccc
Confidence 4433 346667777777777777776666666555544 9999999985
Q ss_pred C-CCCchhhhcccCCcEEECCCccccccCCcccCCCCCCCEEeCCCCcCcccCCccccCCCCCCEEECcCCcCccCCCCc
Q 048006 675 N-GAVPEEIMDLVGLVALNLSKNHLTGQISPKIGQLKSLDFLDLSRNQLVGGIPSSLSQLSGLSVMDLSYNNLSGKIPTV 753 (833)
Q Consensus 675 ~-~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~ 753 (833)
. +..|..|..+++|++|+|++|++++.+|..|+++++|++|+|++|+|++..|..|..+++|++||+++|++++.+|..
T Consensus 482 ~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 561 (635)
T 4g8a_A 482 QENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQE 561 (635)
T ss_dssp GGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSC
T ss_pred ccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHH
Confidence 4 457788999999999999999999999999999999999999999999999999999999999999999999998865
Q ss_pred -ccc-CccccccccCCCCCCCCCC
Q 048006 754 -TQL-QSFNDTVYAGNPELCGLPL 775 (833)
Q Consensus 754 -~~~-~~l~~~~~~gn~~lc~~~~ 775 (833)
..+ ..+..+.+.||||.|+|.+
T Consensus 562 l~~l~~~L~~L~L~~Np~~C~C~~ 585 (635)
T 4g8a_A 562 LQHFPSSLAFLNLTQNDFACTCEH 585 (635)
T ss_dssp TTCCCTTCCEEECTTCCBCCSGGG
T ss_pred HHhhhCcCCEEEeeCCCCcccCCc
Confidence 233 5678888999999999974
No 22
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=3.3e-44 Score=421.80 Aligned_cols=378 Identities=17% Similarity=0.242 Sum_probs=242.0
Q ss_pred CcccccccccccCCCCCcEEEccCCCCCch-hhHHHhhcCCccccCCccEEEcccccccccChhh-hcCCCCCCEEECcC
Q 048006 273 NELEGGIPKFFGNMCSLITLNLSNNKLSGQ-LSEIIQNLSSGCLENSLKSLYLENSLTGVISESF-FSNISNLKELHLAN 350 (833)
Q Consensus 273 n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~-~~~~l~~l~~~~~~~~L~~L~L~~~~~~~i~~~~-~~~l~~L~~L~L~~ 350 (833)
|++++ +|..|+++++|++|+|++|++++. ++..+.... .+...+.+|... |.++++|++|+|++
T Consensus 435 N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s-------------~n~~~g~iP~~l~f~~L~~L~~L~Ls~ 500 (876)
T 4ecn_A 435 NRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDAN-------------SDYAKQYENEELSWSNLKDLTDVELYN 500 (876)
T ss_dssp CEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTT-------------SHHHHHHTTSCCCGGGCTTCCEEEEES
T ss_pred Ccccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccccc-------------cccccccCChhhhhccCCCCCEEECcC
Confidence 55555 556666666666666666666551 110000000 011112255532 33788888888888
Q ss_pred CccccccCCCccCCccccEEEccCcc-CCC-CCChhhcccc-------cccEEeecCCccccccch--hHHhhcccccEE
Q 048006 351 NPLVLKLSHDWVPPFQLIIISLSSCK-IGP-HFPKWLQTQN-------QIELLDISNTGISDTIPD--WFWNLSNKFSFL 419 (833)
Q Consensus 351 n~l~~~~~~~~~~~~~L~~L~L~~~~-l~~-~~~~~l~~l~-------~L~~L~Ls~n~i~~~~~~--~~~~~~~~L~~L 419 (833)
|.+.+..|..+..+++|+.|++++|. +++ .+|..+..++ +|+.|++++|.++ .+|. .+..+. +|++|
T Consensus 501 N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~-~L~~L 578 (876)
T 4ecn_A 501 CPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMV-KLGLL 578 (876)
T ss_dssp CTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCT-TCCEE
T ss_pred CCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCC-CCCEE
Confidence 88888778778888888888888887 776 6777776665 9999999999998 6666 554432 44444
Q ss_pred EcccccccccCCccccccCCCCCceecccCcccccCCCCCCCCceeecCCCcccccccccccccCCcccEEEcCCCcCcC
Q 048006 420 DLASNQIKGKLPNLSSRFGTSNPGIDISSNHFEGLIPPLPSNSSFLNLSKNRFSGSISFLCSISGSKLTYVDLSSNLLSG 499 (833)
Q Consensus 420 ~L~~n~l~~~~p~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~ls~n~l~~ 499 (833)
++++|.+ +
T Consensus 579 ~Ls~N~l-----------------------------------------------------------------------~- 586 (876)
T 4ecn_A 579 DCVHNKV-----------------------------------------------------------------------R- 586 (876)
T ss_dssp ECTTSCC-----------------------------------------------------------------------C-
T ss_pred ECCCCCc-----------------------------------------------------------------------c-
Confidence 4444444 3
Q ss_pred CCCCcccCCCCCcEEEccCCcccccCCCCccCcCC-ccEEEcccCcCccccCccccCCCC--CcEeccCCCccCCCCCcc
Q 048006 500 KLPDCWWTFDSLVILNLENNSFSGRIPDSMGFLQN-IQTLSLHNNRLTGELSSSFRNCSQ--LRLLDLGKNALYGEIPTW 576 (833)
Q Consensus 500 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~-L~~L~L~~n~l~~~~~~~~~~l~~--L~~L~L~~n~l~~~~p~~ 576 (833)
.+| .|..+++|+.|++++|.++ .+|..+..+++ |++|++++|+++ .+|..+..++. |+.|++++|++.+.+|..
T Consensus 587 ~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l 663 (876)
T 4ecn_A 587 HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNI 663 (876)
T ss_dssp BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSC
T ss_pred cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccc
Confidence 333 3444444444444444444 34444444444 444444444444 33444433332 555555555554433321
Q ss_pred h---h-hcCCccceEEecCCcccccccccc-cCCCCCCEEeccCCcCcccCCccccccccccccCCCCcccccceEEeec
Q 048006 577 M---G-ESLSNLIVLSLKSNKFHGKIPFQL-CQLAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKDKLMLTWK 651 (833)
Q Consensus 577 ~---~-~~l~~L~~L~L~~N~l~~~~~~~l-~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~ 651 (833)
. . ..+++|+.|++++|.++ .+|..+ ..+++|+.|+|++|++. .+|..+.....
T Consensus 664 ~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~-------------------- 721 (876)
T 4ecn_A 664 SCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMT-SIPENSLKPKD-------------------- 721 (876)
T ss_dssp SSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTT--------------------
T ss_pred hhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCC-ccChHHhcccc--------------------
Confidence 1 0 01346666666666666 344333 36677777777777776 44443322110
Q ss_pred cCcchhccccCcccEEEccCCcCCCCCchhhh--cccCCcEEECCCccccccCCcccCCCCCCCEEeCCC------CcCc
Q 048006 652 GSEREYRSTLGLVKSLELSNNNLNGAVPEEIM--DLVGLVALNLSKNHLTGQISPKIGQLKSLDFLDLSR------NQLV 723 (833)
Q Consensus 652 ~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~--~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~------N~l~ 723 (833)
.....+++|+.|+|++|+++ .+|..+. .+++|+.|+|++|++++ +|..+..+++|+.|+|++ |++.
T Consensus 722 ----~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~ 795 (876)
T 4ecn_A 722 ----GNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRIL 795 (876)
T ss_dssp ----SCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCC
T ss_pred ----ccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCccccccc
Confidence 00012345699999999999 7898887 99999999999999997 799999999999999977 8899
Q ss_pred ccCCccccCCCCCCEEECcCCcCccCCCCccccCccccccccCCCCCC
Q 048006 724 GGIPSSLSQLSGLSVMDLSYNNLSGKIPTVTQLQSFNDTVYAGNPELC 771 (833)
Q Consensus 724 ~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~l~~~~~~gn~~lc 771 (833)
+.+|..+..+++|+.|++++|++ +.+|.. ....+..+++.+||...
T Consensus 796 ~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~-l~~~L~~LdLs~N~l~~ 841 (876)
T 4ecn_A 796 RQWPTGITTCPSLIQLQIGSNDI-RKVDEK-LTPQLYILDIADNPNIS 841 (876)
T ss_dssp CCCCTTGGGCSSCCEEECCSSCC-CBCCSC-CCSSSCEEECCSCTTCE
T ss_pred ccChHHHhcCCCCCEEECCCCCC-CccCHh-hcCCCCEEECCCCCCCc
Confidence 99999999999999999999999 788876 33678888899998754
No 23
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=1.5e-42 Score=398.28 Aligned_cols=462 Identities=21% Similarity=0.208 Sum_probs=347.6
Q ss_pred CCCCEEEccCCcCCCCCCCcccccccCCcEEEccCccccccccccccCCCCCcEEECcCCcccccccccccCCCCCcEEE
Q 048006 214 TSLETLVLSDNNLTSSIYPWLPNISSIFISIDLGFNQLQGSIPESFQHMVYLEHLRLSFNELEGGIPKFFGNMCSLITLN 293 (833)
Q Consensus 214 ~~L~~L~Ls~n~l~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 293 (833)
...+++++++|.+++ +|..++ ++ +++|++++|.+++..|..|.++++|++|++++|++++..|..|..+++|++|+
T Consensus 31 ~~~~~l~ls~~~L~~-ip~~~~--~~-L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 106 (562)
T 3a79_B 31 ELESMVDYSNRNLTH-VPKDLP--PR-TKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLD 106 (562)
T ss_dssp --CCEEECTTSCCCS-CCTTSC--TT-CCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEE
T ss_pred CCCcEEEcCCCCCcc-CCCCCC--CC-cCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEE
Confidence 455899999999986 676664 45 99999999999998888999999999999999999998899999999999999
Q ss_pred ccCCCCCchhhHHHhhcCCccccCCccEEEcccccccccCh-hhhcCCCCCCEEECcCCccccccCCCccCCccc--cEE
Q 048006 294 LSNNKLSGQLSEIIQNLSSGCLENSLKSLYLENSLTGVISE-SFFSNISNLKELHLANNPLVLKLSHDWVPPFQL--III 370 (833)
Q Consensus 294 Ls~n~l~~~~~~~l~~l~~~~~~~~L~~L~L~~~~~~~i~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L--~~L 370 (833)
+++|+++. +|.. .++ +|++|++++|.+..++. ..|.++++|++|++++|.+... .+..+.+| ++|
T Consensus 107 Ls~N~l~~-lp~~--~l~------~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L 174 (562)
T 3a79_B 107 VSHNRLQN-ISCC--PMA------SLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCI 174 (562)
T ss_dssp CTTSCCCE-ECSC--CCT------TCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEE
T ss_pred CCCCcCCc-cCcc--ccc------cCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEE
Confidence 99999984 4443 566 89999998888877663 5788899999999999888753 44444555 888
Q ss_pred EccCccC--CCCCChhhcccc-cccEEeecCCccccccchhHHhhcccccEEEcccccc-----cccCCccccccCCCCC
Q 048006 371 SLSSCKI--GPHFPKWLQTQN-QIELLDISNTGISDTIPDWFWNLSNKFSFLDLASNQI-----KGKLPNLSSRFGTSNP 442 (833)
Q Consensus 371 ~L~~~~l--~~~~~~~l~~l~-~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~l-----~~~~p~~~~~~~~~l~ 442 (833)
++++|.+ ++..|..+..+. ..-.+++++|.+.+.++.......++|+.+++++|.. .+.++.. ..
T Consensus 175 ~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l--~~----- 247 (562)
T 3a79_B 175 LLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSEL--TR----- 247 (562)
T ss_dssp EEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHH--HS-----
T ss_pred EeecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHH--hc-----
Confidence 8888888 777777776654 1224577777776666555444445677777777641 1111111 11
Q ss_pred ceecccCcccccCCCCCCCCceeecCCCcccccccc-c-ccccCCcccEEEcCCCcCcCCCCCcc-----cCCCCCcEEE
Q 048006 443 GIDISSNHFEGLIPPLPSNSSFLNLSKNRFSGSISF-L-CSISGSKLTYVDLSSNLLSGKLPDCW-----WTFDSLVILN 515 (833)
Q Consensus 443 ~l~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~-~-~~~~~~~L~~L~ls~n~l~~~~~~~~-----~~l~~L~~L~ 515 (833)
.+.++.+++.++.+.+.... . .....++|++|++++|.+++.+|..+ ..++.|+.++
T Consensus 248 ----------------l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~ 311 (562)
T 3a79_B 248 ----------------GPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEH 311 (562)
T ss_dssp ----------------CSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEE
T ss_pred ----------------cCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhh
Confidence 23444455544444332100 0 00113589999999999998888877 6667777777
Q ss_pred ccCCcccccCC-CCccC---cCCccEEEcccCcCccccCccccCCCCCcEeccCCCccCCCCCcchhhcCCccceEEecC
Q 048006 516 LENNSFSGRIP-DSMGF---LQNIQTLSLHNNRLTGELSSSFRNCSQLRLLDLGKNALYGEIPTWMGESLSNLIVLSLKS 591 (833)
Q Consensus 516 Ls~N~l~~~~~-~~~~~---l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~ 591 (833)
++.|.+ .+| ..+.. ..+|++|++++|.+.... ....+++|++|++++|++++.+|..+. .+++|++|++++
T Consensus 312 ~~~~~~--~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~L~~ 386 (562)
T 3a79_B 312 VKNQVF--LFSKEALYSVFAEMNIKMLSISDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCS-TLKRLQTLILQR 386 (562)
T ss_dssp EEECCC--SSCHHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCC-SCSSCCEEECCS
T ss_pred ccccee--ecChhhhhhhhccCcceEEEccCCCccccc--CccCCCCceEEECCCCccccchhhhhc-ccCCCCEEECCC
Confidence 777766 233 22222 257999999999986432 126889999999999999987887776 699999999999
Q ss_pred Ccccc--cccccccCCCCCCEEeccCCcCcccCCc-cccccccccccCCCCcccccceEEeeccCcchhccccCcccEEE
Q 048006 592 NKFHG--KIPFQLCQLAFLQVLDLSLNNISGKIPK-CFNNFTAMTQERSSDPTIKDKLMLTWKGSEREYRSTLGLVKSLE 668 (833)
Q Consensus 592 N~l~~--~~~~~l~~l~~L~~L~Ls~N~l~~~~p~-~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ 668 (833)
|++++ .+|..+..+++|+.|++++|++.+.+|. .+..+++| +.|+
T Consensus 387 N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L--------------------------------~~L~ 434 (562)
T 3a79_B 387 NGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESI--------------------------------LVLN 434 (562)
T ss_dssp SCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTC--------------------------------CEEE
T ss_pred CCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccC--------------------------------CEEE
Confidence 99986 3456789999999999999999875654 35555544 9999
Q ss_pred ccCCcCCCCCchhhhcccCCcEEECCCccccccCCcccCCCCCCCEEeCCCCcCcccCCcc-ccCCCCCCEEECcCCcCc
Q 048006 669 LSNNNLNGAVPEEIMDLVGLVALNLSKNHLTGQISPKIGQLKSLDFLDLSRNQLVGGIPSS-LSQLSGLSVMDLSYNNLS 747 (833)
Q Consensus 669 Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~-l~~l~~L~~L~ls~N~l~ 747 (833)
+++|++++.+|..+. ++|++|+|++|+++ .+|..+..+++|+.|+|++|++++ +|.. +..+++|+.|++++|++.
T Consensus 435 l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~l~~L~~L~l~~N~~~ 510 (562)
T 3a79_B 435 LSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKS-VPDGVFDRLTSLQYIWLHDNPWD 510 (562)
T ss_dssp CCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCC-CCTTSTTTCTTCCCEECCSCCBC
T ss_pred CCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCC-CCHHHHhcCCCCCEEEecCCCcC
Confidence 999999887776554 78999999999999 788888899999999999999995 5555 999999999999999999
Q ss_pred cCCCCccc
Q 048006 748 GKIPTVTQ 755 (833)
Q Consensus 748 g~ip~~~~ 755 (833)
|.+|....
T Consensus 511 c~c~~~~~ 518 (562)
T 3a79_B 511 CTCPGIRY 518 (562)
T ss_dssp CCHHHHHH
T ss_pred CCcchHHH
Confidence 98886543
No 24
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=1.5e-41 Score=390.06 Aligned_cols=464 Identities=20% Similarity=0.202 Sum_probs=265.3
Q ss_pred EEEECCCCCCCCCCcceecCccccCCCCCCEEeCCCCCCCCCCccccccCCCCCCEEEccCCCCCCCCCcccCCccccce
Q 048006 61 ILLDLQPIDFDSFPLRGTISPALLKLHDLRHLNLSFNDFSGSPIPEFIGSLSKLRYLDLFGTVFAGPIPPQLGNLSRLQH 140 (833)
Q Consensus 61 ~~l~L~~~~~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 140 (833)
+++++++ +.+++ +|..+. ++|++|+|++|.+++. .|..|..+++|++|+|++|.+++..|..|.++++|++
T Consensus 34 ~~l~ls~-----~~L~~-ip~~~~--~~L~~L~Ls~N~i~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 104 (562)
T 3a79_B 34 SMVDYSN-----RNLTH-VPKDLP--PRTKALSLSQNSISEL-RMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEY 104 (562)
T ss_dssp CEEECTT-----SCCCS-CCTTSC--TTCCEEECCSSCCCCC-CGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCE
T ss_pred cEEEcCC-----CCCcc-CCCCCC--CCcCEEECCCCCcccc-ChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCE
Confidence 6788888 56664 665554 7899999999999875 6678999999999999999999888888999999999
Q ss_pred ecccCccCCCCCCcccccCCCCCcEEecCCCCCCCCchhHHhhcCCCCCCEEEccCCCCCCCCCccccccccCCCC--CE
Q 048006 141 LDLGSNYLFSTGNLDWLSHLSYLRYLNLDESNLANSSDWFQVIGKLHSLKTLSLHSCYLPPVIPLSLNHLNSSTSL--ET 218 (833)
Q Consensus 141 L~Ls~n~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L--~~ 218 (833)
||+++|.+... +.. .+++|++|++++|.+++++ +|..++++++|++|++++|.+.+... ... ++| +.
T Consensus 105 L~Ls~N~l~~l--p~~--~l~~L~~L~Ls~N~l~~l~-~p~~~~~l~~L~~L~L~~n~l~~~~~---~~l---~~L~L~~ 173 (562)
T 3a79_B 105 LDVSHNRLQNI--SCC--PMASLRHLDLSFNDFDVLP-VCKEFGNLTKLTFLGLSAAKFRQLDL---LPV---AHLHLSC 173 (562)
T ss_dssp EECTTSCCCEE--CSC--CCTTCSEEECCSSCCSBCC-CCGGGGGCTTCCEEEEECSBCCTTTT---GGG---TTSCEEE
T ss_pred EECCCCcCCcc--Ccc--ccccCCEEECCCCCccccC-chHhhcccCcccEEecCCCccccCch---hhh---hhceeeE
Confidence 99999988632 222 7888888888888887642 34577888888888888887765311 111 444 77
Q ss_pred EEccCCcC--CCCCCCcccccccCCcEEEccCccccccccccccCCCCCcEEECcCCcccccccccccCCCCCcEEEccC
Q 048006 219 LVLSDNNL--TSSIYPWLPNISSIFISIDLGFNQLQGSIPESFQHMVYLEHLRLSFNELEGGIPKFFGNMCSLITLNLSN 296 (833)
Q Consensus 219 L~Ls~n~l--~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~ 296 (833)
|++++|.+ ++..|..+..+......++++.|.+.+.++. ..+..+++|+.+++++
T Consensus 174 L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~-----------------------~~~~~l~~L~~L~l~~ 230 (562)
T 3a79_B 174 ILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVN-----------------------MSVNALGHLQLSNIKL 230 (562)
T ss_dssp EEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCE-----------------------EEESSEEEEEEEEEEC
T ss_pred EEeecccccccccCcccccccCcceEEEEecCccchhhhhh-----------------------hcccccceEEEecccc
Confidence 77777776 6666665555432122345555554443332 1233444555555555
Q ss_pred CCCCc-hhhHHHhhcCCccccCCccEEEcccccccccChhhhcCCCCCCEEECcCCccccccCC---CccCCccccEEEc
Q 048006 297 NKLSG-QLSEIIQNLSSGCLENSLKSLYLENSLTGVISESFFSNISNLKELHLANNPLVLKLSH---DWVPPFQLIIISL 372 (833)
Q Consensus 297 n~l~~-~~~~~l~~l~~~~~~~~L~~L~L~~~~~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~---~~~~~~~L~~L~L 372 (833)
|+... .++..+. .|..+++|+.++++++.+.+.... ......+|++|++
T Consensus 231 n~~~~~~l~~~~~---------------------------~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l 283 (562)
T 3a79_B 231 NDENCQRLMTFLS---------------------------ELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNI 283 (562)
T ss_dssp CSTTHHHHHHHHH---------------------------HHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEE
T ss_pred cccccchHHHHHH---------------------------HHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEE
Confidence 53110 0011000 122333333333333222211000 0000113333333
Q ss_pred cCccCCCCCChhh-----cccccccEEeecCCccccccc-hhHHhhcccccEEEcccccccccCCccccccCCCCCceec
Q 048006 373 SSCKIGPHFPKWL-----QTQNQIELLDISNTGISDTIP-DWFWNLSNKFSFLDLASNQIKGKLPNLSSRFGTSNPGIDI 446 (833)
Q Consensus 373 ~~~~l~~~~~~~l-----~~l~~L~~L~Ls~n~i~~~~~-~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~~l~~l~l 446 (833)
++|.+.+.+|..+ ..++.|+.++++.+.+ .+| ..+.....
T Consensus 284 ~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~~~-------------------------------- 329 (562)
T 3a79_B 284 YNLTITERIDREEFTYSETALKSLMIEHVKNQVF--LFSKEALYSVFA-------------------------------- 329 (562)
T ss_dssp EEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHHHHHH--------------------------------
T ss_pred eccEeeccccchhhhcccccchheehhhccccee--ecChhhhhhhhc--------------------------------
Confidence 3333333333333 3333333333333333 122 11111100
Q ss_pred ccCcccccCCCCCCCCceeecCCCcccccccccccccCCcccEEEcCCCcCcCCCCCcccCCCCCcEEEccCCcccccCC
Q 048006 447 SSNHFEGLIPPLPSNSSFLNLSKNRFSGSISFLCSISGSKLTYVDLSSNLLSGKLPDCWWTFDSLVILNLENNSFSGRIP 526 (833)
Q Consensus 447 ~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 526 (833)
..+|++|++++|.+.... ....+++|++|++++|.+++.+|
T Consensus 330 -------------------------------------~~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~ 370 (562)
T 3a79_B 330 -------------------------------------EMNIKMLSISDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVF 370 (562)
T ss_dssp -------------------------------------TCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTT
T ss_pred -------------------------------------cCcceEEEccCCCccccc--CccCCCCceEEECCCCccccchh
Confidence 133455555555443211 11345555666666666555555
Q ss_pred CCccCcCCccEEEcccCcCccc--cCccccCCCCCcEeccCCCccCCCCCcchhhcCCccceEEecCCcccccccccccC
Q 048006 527 DSMGFLQNIQTLSLHNNRLTGE--LSSSFRNCSQLRLLDLGKNALYGEIPTWMGESLSNLIVLSLKSNKFHGKIPFQLCQ 604 (833)
Q Consensus 527 ~~~~~l~~L~~L~L~~n~l~~~--~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~ 604 (833)
..+..+++|++|++++|++++. +|..+..+++|++|++++|++.+.+|... +..
T Consensus 371 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~------------------------~~~ 426 (562)
T 3a79_B 371 QGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRT------------------------CAW 426 (562)
T ss_dssp TTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCC------------------------CCC
T ss_pred hhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhh------------------------hcC
Confidence 5555555666666666655542 23345555555555555555554344433 344
Q ss_pred CCCCCEEeccCCcCcccCCccccccccccccCCCCcccccceEEeeccCcchhccccCcccEEEccCCcCCCCCchhhhc
Q 048006 605 LAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKDKLMLTWKGSEREYRSTLGLVKSLELSNNNLNGAVPEEIMD 684 (833)
Q Consensus 605 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~ 684 (833)
+++|+.|++++|++++..|..+. + +|+.|++++|+++ .+|..+..
T Consensus 427 l~~L~~L~l~~n~l~~~~~~~l~--~--------------------------------~L~~L~L~~N~l~-~ip~~~~~ 471 (562)
T 3a79_B 427 AESILVLNLSSNMLTGSVFRCLP--P--------------------------------KVKVLDLHNNRIM-SIPKDVTH 471 (562)
T ss_dssp CTTCCEEECCSSCCCGGGGSSCC--T--------------------------------TCSEEECCSSCCC-CCCTTTTS
T ss_pred cccCCEEECCCCCCCcchhhhhc--C--------------------------------cCCEEECCCCcCc-ccChhhcC
Confidence 55555555555555544443321 1 2377777777777 67777778
Q ss_pred ccCCcEEECCCccccccCCcc-cCCCCCCCEEeCCCCcCcccCC
Q 048006 685 LVGLVALNLSKNHLTGQISPK-IGQLKSLDFLDLSRNQLVGGIP 727 (833)
Q Consensus 685 l~~L~~L~Ls~N~l~~~~p~~-l~~l~~L~~L~Ls~N~l~~~~p 727 (833)
+++|++|+|++|+++ .+|.. +..+++|+.|++++|++.+..|
T Consensus 472 l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~c~ 514 (562)
T 3a79_B 472 LQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDNPWDCTCP 514 (562)
T ss_dssp SCCCSEEECCSSCCC-CCCTTSTTTCTTCCCEECCSCCBCCCHH
T ss_pred CCCCCEEECCCCCCC-CCCHHHHhcCCCCCEEEecCCCcCCCcc
Confidence 888999999999998 45555 8889999999999999987554
No 25
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=1.4e-40 Score=368.64 Aligned_cols=266 Identities=19% Similarity=0.218 Sum_probs=152.9
Q ss_pred ccccCCCCCCEEeCCCCCCCCCCccccccCCCCCCEEEccCCCCCCCCCcccCCccccceecccCccCCCCCCcccccCC
Q 048006 81 PALLKLHDLRHLNLSFNDFSGSPIPEFIGSLSKLRYLDLFGTVFAGPIPPQLGNLSRLQHLDLGSNYLFSTGNLDWLSHL 160 (833)
Q Consensus 81 ~~l~~l~~L~~L~Ls~n~~~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~~~~~~~~~~l~~l 160 (833)
|.-.+.++|++|++++|.+ + .+|+.++++++|++|++++|.+.|.+|.+++++++|+++++++|..
T Consensus 5 p~~~~~~~L~~L~l~~n~l-~-~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~------------ 70 (454)
T 1jl5_A 5 PRNVSNTFLQEPLRHSSNL-T-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLD------------ 70 (454)
T ss_dssp -------------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHH------------
T ss_pred ccccccccchhhhcccCch-h-hCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhc------------
Confidence 4445678999999999999 4 4999999999999999999999999999999999999999988753
Q ss_pred CCCcEEecCCCCCCCCchhHHhhcCCCCCCEEEccCCCCCCCCCccccccccCCCCCEEEccCCcCCCCCCCcccccccC
Q 048006 161 SYLRYLNLDESNLANSSDWFQVIGKLHSLKTLSLHSCYLPPVIPLSLNHLNSSTSLETLVLSDNNLTSSIYPWLPNISSI 240 (833)
Q Consensus 161 ~~L~~L~Ls~n~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~~ 240 (833)
.++++|++++|.+++++.+ .++|++|++++|.+.+ +|.. .++|++|++++|++++. +... ++
T Consensus 71 ~~l~~L~l~~~~l~~lp~~------~~~L~~L~l~~n~l~~-lp~~------~~~L~~L~l~~n~l~~l-~~~~---~~- 132 (454)
T 1jl5_A 71 RQAHELELNNLGLSSLPEL------PPHLESLVASCNSLTE-LPEL------PQSLKSLLVDNNNLKAL-SDLP---PL- 132 (454)
T ss_dssp HTCSEEECTTSCCSCCCSC------CTTCSEEECCSSCCSS-CCCC------CTTCCEEECCSSCCSCC-CSCC---TT-
T ss_pred cCCCEEEecCCccccCCCC------cCCCCEEEccCCcCCc-cccc------cCCCcEEECCCCccCcc-cCCC---CC-
Confidence 4678888888888775432 3678888888888776 4431 26777777777777642 2110 23
Q ss_pred CcEEEccCccccccccccccCCCCCcEEECcCCcccccccccccCCCCCcEEEccCCCCCchhhHHHhhcCCccccCCcc
Q 048006 241 FISIDLGFNQLQGSIPESFQHMVYLEHLRLSFNELEGGIPKFFGNMCSLITLNLSNNKLSGQLSEIIQNLSSGCLENSLK 320 (833)
Q Consensus 241 L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~~~~~~L~ 320 (833)
|++|++++|.+++ +| .|+++++|++|++++|++++ +|..+ ++|++|++++|++++
T Consensus 133 L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~------------------- 187 (454)
T 1jl5_A 133 LEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKK-LPDLP---PSLEFIAAGNNQLEE------------------- 187 (454)
T ss_dssp CCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSC-CCCCC---TTCCEEECCSSCCSS-------------------
T ss_pred CCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCcc-cCCCc---ccccEEECcCCcCCc-------------------
Confidence 6677777777665 45 46666777777777776664 44332 366666666666554
Q ss_pred EEEcccccccccChhhhcCCCCCCEEECcCCccccccCCCccCCccccEEEccCccCCCCCChhhcccccccEEeecCCc
Q 048006 321 SLYLENSLTGVISESFFSNISNLKELHLANNPLVLKLSHDWVPPFQLIIISLSSCKIGPHFPKWLQTQNQIELLDISNTG 400 (833)
Q Consensus 321 ~L~L~~~~~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~n~ 400 (833)
+| .|.++++|++|++++|.+.+.. . ...+|++|++++|.+. .+|. +..+++|++|++++|+
T Consensus 188 -----------l~--~~~~l~~L~~L~l~~N~l~~l~-~---~~~~L~~L~l~~n~l~-~lp~-~~~l~~L~~L~l~~N~ 248 (454)
T 1jl5_A 188 -----------LP--ELQNLPFLTAIYADNNSLKKLP-D---LPLSLESIVAGNNILE-ELPE-LQNLPFLTTIYADNNL 248 (454)
T ss_dssp -----------CC--CCTTCTTCCEEECCSSCCSSCC-C---CCTTCCEEECCSSCCS-SCCC-CTTCTTCCEEECCSSC
T ss_pred -----------Cc--cccCCCCCCEEECCCCcCCcCC-C---CcCcccEEECcCCcCC-cccc-cCCCCCCCEEECCCCc
Confidence 33 2556667777777777665421 1 1135666666666665 4442 5666666666666666
Q ss_pred cccccchhHHhhcccccEEEccccccc
Q 048006 401 ISDTIPDWFWNLSNKFSFLDLASNQIK 427 (833)
Q Consensus 401 i~~~~~~~~~~~~~~L~~L~L~~n~l~ 427 (833)
+++ +|.. .++|++|++++|+++
T Consensus 249 l~~-l~~~----~~~L~~L~l~~N~l~ 270 (454)
T 1jl5_A 249 LKT-LPDL----PPSLEALNVRDNYLT 270 (454)
T ss_dssp CSS-CCSC----CTTCCEEECCSSCCS
T ss_pred CCc-cccc----ccccCEEECCCCccc
Confidence 653 2221 124555555555444
No 26
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=4.2e-39 Score=360.45 Aligned_cols=389 Identities=22% Similarity=0.219 Sum_probs=254.3
Q ss_pred CEEEccCCcCCCCCCCcccccccCCcEEEccCccccccccccccCCCCCcEEECcCCcccccc-cccccCCCCCcEEEcc
Q 048006 217 ETLVLSDNNLTSSIYPWLPNISSIFISIDLGFNQLQGSIPESFQHMVYLEHLRLSFNELEGGI-PKFFGNMCSLITLNLS 295 (833)
Q Consensus 217 ~~L~Ls~n~l~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~-p~~l~~l~~L~~L~Ls 295 (833)
+.++.+++.++. +|. ++ ++ +++|++++|.+++..|..|+++++|++|++++|.+.+.+ +..|..+++|++|+++
T Consensus 13 ~~~~c~~~~l~~-lp~-l~--~~-l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls 87 (455)
T 3v47_A 13 YNAICINRGLHQ-VPE-LP--AH-VNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLD 87 (455)
T ss_dssp TEEECCSSCCSS-CCC-CC--TT-CCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECT
T ss_pred cccCcCCCCccc-CCC-CC--Cc-cCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCC
Confidence 456666666653 333 22 23 677777777777666666777777777777777665433 4456666677777777
Q ss_pred CCCCCchhhHHHhhcCCccccCCccEEEcccccccccChhhhcCCCCCCEEECcCCccccccC--CCccCCccccEEEcc
Q 048006 296 NNKLSGQLSEIIQNLSSGCLENSLKSLYLENSLTGVISESFFSNISNLKELHLANNPLVLKLS--HDWVPPFQLIIISLS 373 (833)
Q Consensus 296 ~n~l~~~~~~~l~~l~~~~~~~~L~~L~L~~~~~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~~~~~~L~~L~L~ 373 (833)
+|++++..|.. |.++++|++|++++|.+.+..+ ..+..+++|++|+++
T Consensus 88 ~n~l~~~~~~~------------------------------~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~ 137 (455)
T 3v47_A 88 YNQFLQLETGA------------------------------FNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLR 137 (455)
T ss_dssp TCTTCEECTTT------------------------------TTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECC
T ss_pred CCccCccChhh------------------------------ccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECC
Confidence 66665544433 4455555555555555554222 124444445555555
Q ss_pred CccCCCCCChh-hcccccccEEeecCCccccccchhHHhhcccccEEEcccccccccCCccccccCCCCCceecccCccc
Q 048006 374 SCKIGPHFPKW-LQTQNQIELLDISNTGISDTIPDWFWNLSNKFSFLDLASNQIKGKLPNLSSRFGTSNPGIDISSNHFE 452 (833)
Q Consensus 374 ~~~l~~~~~~~-l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~~l~~l~l~~n~l~ 452 (833)
+|.+++..|.. +..+++|++|++++|++++..+..+....
T Consensus 138 ~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~--------------------------------------- 178 (455)
T 3v47_A 138 DNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQ--------------------------------------- 178 (455)
T ss_dssp SSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGT---------------------------------------
T ss_pred CCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccc---------------------------------------
Confidence 55554444443 55555666666666555554444433221
Q ss_pred ccCCCCCCCCceeecCCCcccccccccccccCCcccEEEcCCCcCcCCCCCc--------ccCCCCCcEEEccCCccccc
Q 048006 453 GLIPPLPSNSSFLNLSKNRFSGSISFLCSISGSKLTYVDLSSNLLSGKLPDC--------WWTFDSLVILNLENNSFSGR 524 (833)
Q Consensus 453 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~--------~~~l~~L~~L~Ls~N~l~~~ 524 (833)
..+|+.+++++|.+.+..+.. +..+++|++|++++|.+++.
T Consensus 179 -------------------------------~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~ 227 (455)
T 3v47_A 179 -------------------------------GKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKES 227 (455)
T ss_dssp -------------------------------TCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHH
T ss_pred -------------------------------cccccccccccCcccccchhhccccccccccccceeeeEecCCCccccc
Confidence 123334444444433322211 22344555555555555554
Q ss_pred CCCCccCc---CCccEEEcccCcCccccCccccCCCCCcEeccCCCccCCCCCcchh-hcCCccceEEecCCcccccccc
Q 048006 525 IPDSMGFL---QNIQTLSLHNNRLTGELSSSFRNCSQLRLLDLGKNALYGEIPTWMG-ESLSNLIVLSLKSNKFHGKIPF 600 (833)
Q Consensus 525 ~~~~~~~l---~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~-~~l~~L~~L~L~~N~l~~~~~~ 600 (833)
.|..+... ++|+.|++++|.+.+... ..+.+.+..+..+. ...++|++|++++|.+.+..|.
T Consensus 228 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~ 293 (455)
T 3v47_A 228 MAKRFFDAIAGTKIQSLILSNSYNMGSSF--------------GHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKS 293 (455)
T ss_dssp HHHHHHHHTTTCCEEEEECTTCTTTSCCT--------------TCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTT
T ss_pred chhhhhccccccceeeEeecccccccccc--------------chhhhccCcccccccccccCceEEEecCccccccchh
Confidence 44444332 566666666665543211 11111111111111 0246899999999999988899
Q ss_pred cccCCCCCCEEeccCCcCcccCCccccccccccccCCCCcccccceEEeeccCcchhccccCcccEEEccCCcCCCCCch
Q 048006 601 QLCQLAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKDKLMLTWKGSEREYRSTLGLVKSLELSNNNLNGAVPE 680 (833)
Q Consensus 601 ~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~ 680 (833)
.+..+++|++|++++|++.+..|..|..+++| +.|++++|++++..|.
T Consensus 294 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L--------------------------------~~L~Ls~N~l~~~~~~ 341 (455)
T 3v47_A 294 VFSHFTDLEQLTLAQNEINKIDDNAFWGLTHL--------------------------------LKLNLSQNFLGSIDSR 341 (455)
T ss_dssp TTTTCTTCCEEECTTSCCCEECTTTTTTCTTC--------------------------------CEEECCSSCCCEECGG
T ss_pred hcccCCCCCEEECCCCcccccChhHhcCcccC--------------------------------CEEECCCCccCCcChh
Confidence 99999999999999999998888888777766 8999999999988899
Q ss_pred hhhcccCCcEEECCCccccccCCcccCCCCCCCEEeCCCCcCcccCCccccCCCCCCEEECcCCcCccCCCCcccc
Q 048006 681 EIMDLVGLVALNLSKNHLTGQISPKIGQLKSLDFLDLSRNQLVGGIPSSLSQLSGLSVMDLSYNNLSGKIPTVTQL 756 (833)
Q Consensus 681 ~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~~~~ 756 (833)
.+..+++|++|+|++|++++..|..|..+++|++|+|++|++++..+..+..+++|++|++++|+++|.+|....+
T Consensus 342 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~l 417 (455)
T 3v47_A 342 MFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYL 417 (455)
T ss_dssp GGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTTHHH
T ss_pred HhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCcchHH
Confidence 9999999999999999999999999999999999999999999887788899999999999999999999975443
No 27
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=6.8e-41 Score=353.48 Aligned_cols=294 Identities=29% Similarity=0.401 Sum_probs=208.1
Q ss_pred CCCCHHHHHHHHHhhhcCcCCCCCCCCCCCCCCCCCCCc--ccceEecCCC--CcEEEEECCCCCCCCCCcce--ecCcc
Q 048006 9 IRCIDEEREALLTFKASLVDESGVLSSWGPEDEKRDCCK--WTGLRCSNKT--NHVILLDLQPIDFDSFPLRG--TISPA 82 (833)
Q Consensus 9 ~~~~~~~~~~ll~~k~~~~~~~~~~~~w~~~~~~~~~c~--w~gv~c~~~~--~~v~~l~L~~~~~~~~~l~~--~~~~~ 82 (833)
+.|.++|++||++||+++.+|. .+++|. .+.+||. |.||+|+..+ ++|++|+|++ +.++| .+|+.
T Consensus 1 ~~c~~~~~~aL~~~k~~~~~~~-~l~~W~---~~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~-----~~l~~~~~~~~~ 71 (313)
T 1ogq_A 1 ELCNPQDKQALLQIKKDLGNPT-TLSSWL---PTTDCCNRTWLGVLCDTDTQTYRVNNLDLSG-----LNLPKPYPIPSS 71 (313)
T ss_dssp CCSCHHHHHHHHHHHHHTTCCG-GGTTCC---TTSCTTTTCSTTEEECCSSSCCCEEEEEEEC-----CCCSSCEECCGG
T ss_pred CCCCHHHHHHHHHHHHhcCCcc-cccCCC---CCCCCCcCCCcceEeCCCCCCceEEEEECCC-----CCccCCcccChh
Confidence 3699999999999999998876 789997 4678998 9999998655 8999999999 78888 89999
Q ss_pred ccCCCCCCEEeCCC-CCCCCCCccccccCCCCCCEEEccCCCCCCCCCcccCCccccceecccCccCCCCCCcccccCCC
Q 048006 83 LLKLHDLRHLNLSF-NDFSGSPIPEFIGSLSKLRYLDLFGTVFAGPIPPQLGNLSRLQHLDLGSNYLFSTGNLDWLSHLS 161 (833)
Q Consensus 83 l~~l~~L~~L~Ls~-n~~~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~ 161 (833)
+.++++|++|++++ |.+.+. +|..|+++++|++|+|++|.+++.+|..|.++++|++|++++|.+.. ..+..+++++
T Consensus 72 l~~l~~L~~L~L~~~n~l~~~-~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~-~~p~~~~~l~ 149 (313)
T 1ogq_A 72 LANLPYLNFLYIGGINNLVGP-IPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSG-TLPPSISSLP 149 (313)
T ss_dssp GGGCTTCSEEEEEEETTEESC-CCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEES-CCCGGGGGCT
T ss_pred HhCCCCCCeeeCCCCCccccc-CChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCC-cCChHHhcCC
Confidence 99999999999995 899885 89999999999999999999998999999999999999999998864 3344555666
Q ss_pred CCcEEecCCCCCCCCchhHHhhcCCC-CCCEEEccCCCCCCCCCccccccccCCCCCEEEccCCcCCCCCCCcccccccC
Q 048006 162 YLRYLNLDESNLANSSDWFQVIGKLH-SLKTLSLHSCYLPPVIPLSLNHLNSSTSLETLVLSDNNLTSSIYPWLPNISSI 240 (833)
Q Consensus 162 ~L~~L~Ls~n~~~~~~~~~~~l~~l~-~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~~ 240 (833)
+|++|++++|.+++. +|..++.++ +|++|++++|. +++.+|..+..+.
T Consensus 150 ~L~~L~L~~N~l~~~--~p~~l~~l~~~L~~L~L~~N~---------------------------l~~~~~~~~~~l~-- 198 (313)
T 1ogq_A 150 NLVGITFDGNRISGA--IPDSYGSFSKLFTSMTISRNR---------------------------LTGKIPPTFANLN-- 198 (313)
T ss_dssp TCCEEECCSSCCEEE--CCGGGGCCCTTCCEEECCSSE---------------------------EEEECCGGGGGCC--
T ss_pred CCCeEECcCCcccCc--CCHHHhhhhhcCcEEECcCCe---------------------------eeccCChHHhCCc--
Confidence 666666666655431 334444444 45555555554 4444444444442
Q ss_pred CcEEEccCccccccccccccCCCCCcEEECcCCcccccccccccCCCCCcEEEccCCCCCchhhHHHhhcCCccccCCcc
Q 048006 241 FISIDLGFNQLQGSIPESFQHMVYLEHLRLSFNELEGGIPKFFGNMCSLITLNLSNNKLSGQLSEIIQNLSSGCLENSLK 320 (833)
Q Consensus 241 L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~~~~~~L~ 320 (833)
|++|++++|.+++..|..|..+++|++|++++|++++.+|. +..+++|++|++++|++++.+|..+..++ +|+
T Consensus 199 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~------~L~ 271 (313)
T 1ogq_A 199 LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLK------FLH 271 (313)
T ss_dssp CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCT------TCC
T ss_pred ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCc------CCC
Confidence 55555555555555555555555555555555555544433 45555555555555555555555555555 555
Q ss_pred EEEcccccc-cccChhhhcCCCCCCEEECcCCcc
Q 048006 321 SLYLENSLT-GVISESFFSNISNLKELHLANNPL 353 (833)
Q Consensus 321 ~L~L~~~~~-~~i~~~~~~~l~~L~~L~L~~n~l 353 (833)
.|++++|.+ +.+|. ...+++|+.+++++|+.
T Consensus 272 ~L~Ls~N~l~~~ip~--~~~l~~L~~l~l~~N~~ 303 (313)
T 1ogq_A 272 SLNVSFNNLCGEIPQ--GGNLQRFDVSAYANNKC 303 (313)
T ss_dssp EEECCSSEEEEECCC--STTGGGSCGGGTCSSSE
T ss_pred EEECcCCcccccCCC--CccccccChHHhcCCCC
Confidence 555533333 34444 36677788888888873
No 28
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=1.2e-37 Score=348.59 Aligned_cols=367 Identities=22% Similarity=0.230 Sum_probs=285.6
Q ss_pred CCCCEEEccCCcCCCCCCCcccccccCCcEEEccCccccccc-cccccCCCCCcEEECcCCcccccccccccCCCCCcEE
Q 048006 214 TSLETLVLSDNNLTSSIYPWLPNISSIFISIDLGFNQLQGSI-PESFQHMVYLEHLRLSFNELEGGIPKFFGNMCSLITL 292 (833)
Q Consensus 214 ~~L~~L~Ls~n~l~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~-p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 292 (833)
++|++|+|++|.+++..|..+.++++ |++|++++|.+.+.+ +..|.++++|++|++++|++++..|..|+++++|++|
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~-L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 108 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFSRLQD-LQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVL 108 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTSSCTT-CCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEE
T ss_pred CccCEEEecCCccCcCChhHhccCcc-ccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEE
Confidence 56677777777776666666667766 777777777776443 4567777778888888887777777777777788888
Q ss_pred EccCCCCCchhhHH--HhhcCCccccCCccEEEcccccccccCh-hhhcCCCCCCEEECcCCccccccCCCccCC--ccc
Q 048006 293 NLSNNKLSGQLSEI--IQNLSSGCLENSLKSLYLENSLTGVISE-SFFSNISNLKELHLANNPLVLKLSHDWVPP--FQL 367 (833)
Q Consensus 293 ~Ls~n~l~~~~~~~--l~~l~~~~~~~~L~~L~L~~~~~~~i~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~--~~L 367 (833)
++++|++++..+.. +..++ +|++|++++|.+..+.+ ..|.++++|++|++++|.+.+..+..+..+ .++
T Consensus 109 ~L~~n~l~~~~~~~~~~~~l~------~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L 182 (455)
T 3v47_A 109 TLTQCNLDGAVLSGNFFKPLT------SLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHF 182 (455)
T ss_dssp ECTTSCCBTHHHHSSTTTTCT------TCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEE
T ss_pred eCCCCCCCccccCcccccCcc------cCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccc
Confidence 88888777765554 66676 77777776666665533 347888999999999999888877777665 688
Q ss_pred cEEEccCccCCCCCChhh--------cccccccEEeecCCccccccchhHHhhc--ccccEEEcccccccccCCcccccc
Q 048006 368 IIISLSSCKIGPHFPKWL--------QTQNQIELLDISNTGISDTIPDWFWNLS--NKFSFLDLASNQIKGKLPNLSSRF 437 (833)
Q Consensus 368 ~~L~L~~~~l~~~~~~~l--------~~l~~L~~L~Ls~n~i~~~~~~~~~~~~--~~L~~L~L~~n~l~~~~p~~~~~~ 437 (833)
+.+++++|.+.+..+.++ ..+++|++|++++|++++..|..+.... .+++.|++++|.+.+....
T Consensus 183 ~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~----- 257 (455)
T 3v47_A 183 TLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFG----- 257 (455)
T ss_dssp EEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTT-----
T ss_pred cccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccc-----
Confidence 999999998887655443 3567899999999999988888887653 4788888888876543111
Q ss_pred CCCCCceecccCcccccCCCCCCCCceeecCCCcccccccccccccCCcccEEEcCCCcCcCCCCCcccCCCCCcEEEcc
Q 048006 438 GTSNPGIDISSNHFEGLIPPLPSNSSFLNLSKNRFSGSISFLCSISGSKLTYVDLSSNLLSGKLPDCWWTFDSLVILNLE 517 (833)
Q Consensus 438 ~~~l~~l~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls 517 (833)
.+.+.+..+. . ......++|++|++++|.+++..|..|..+++|++|+++
T Consensus 258 ----------~~~~~~~~~~-------------~-------~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls 307 (455)
T 3v47_A 258 ----------HTNFKDPDNF-------------T-------FKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLA 307 (455)
T ss_dssp ----------CCSSCCCCTT-------------T-------TGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECT
T ss_pred ----------hhhhccCccc-------------c-------cccccccCceEEEecCccccccchhhcccCCCCCEEECC
Confidence 1111111000 0 000113789999999999999999999999999999999
Q ss_pred CCcccccCCCCccCcCCccEEEcccCcCccccCccccCCCCCcEeccCCCccCCCCCcchhhcCCccceEEecCCccccc
Q 048006 518 NNSFSGRIPDSMGFLQNIQTLSLHNNRLTGELSSSFRNCSQLRLLDLGKNALYGEIPTWMGESLSNLIVLSLKSNKFHGK 597 (833)
Q Consensus 518 ~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~ 597 (833)
+|.+++..|..|..+++|++|++++|++++..+..|..+++|++|++++|++++..|..+. .+++|++|++++|++++.
T Consensus 308 ~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~-~l~~L~~L~L~~N~l~~~ 386 (455)
T 3v47_A 308 QNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFL-GLPNLKELALDTNQLKSV 386 (455)
T ss_dssp TSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTT-TCTTCCEEECCSSCCSCC
T ss_pred CCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhcc-ccccccEEECCCCccccC
Confidence 9999999899999999999999999999988899999999999999999999866676666 699999999999999987
Q ss_pred ccccccCCCCCCEEeccCCcCcccCC
Q 048006 598 IPFQLCQLAFLQVLDLSLNNISGKIP 623 (833)
Q Consensus 598 ~~~~l~~l~~L~~L~Ls~N~l~~~~p 623 (833)
.+..+..+++|+.|++++|++++..|
T Consensus 387 ~~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 387 PDGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp CTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred CHhHhccCCcccEEEccCCCcccCCC
Confidence 77778999999999999999998776
No 29
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=2.1e-38 Score=351.02 Aligned_cols=388 Identities=24% Similarity=0.313 Sum_probs=182.2
Q ss_pred CCCCEEEccCCcCCCCCCCcccccccCCcEEEccCccccccccccccCCCCC-------------cEEECcCCccccccc
Q 048006 214 TSLETLVLSDNNLTSSIYPWLPNISSIFISIDLGFNQLQGSIPESFQHMVYL-------------EHLRLSFNELEGGIP 280 (833)
Q Consensus 214 ~~L~~L~Ls~n~l~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~p~~~~~l~~L-------------~~L~L~~n~l~~~~p 280 (833)
+.|++|++++|.+ +.+|++++++++ |++|++++|.+++.+|..++.+++| ++|++++|.+++ +|
T Consensus 11 ~~L~~L~l~~n~l-~~iP~~i~~L~~-L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~-lp 87 (454)
T 1jl5_A 11 TFLQEPLRHSSNL-TEMPVEAENVKS-KTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSS-LP 87 (454)
T ss_dssp ------------------------CC-HHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSC-CC
T ss_pred ccchhhhcccCch-hhCChhHhcccc-hhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCcccc-CC
Confidence 5556666666665 555656666665 6666666666666666666655554 555555555543 22
Q ss_pred ccccCCCCCcEEEccCCCCCchhhHHHhhcCCccccCCccEEEcccccccccChhhhcCCCCCCEEECcCCccccccCCC
Q 048006 281 KFFGNMCSLITLNLSNNKLSGQLSEIIQNLSSGCLENSLKSLYLENSLTGVISESFFSNISNLKELHLANNPLVLKLSHD 360 (833)
Q Consensus 281 ~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~~~~~~L~~L~L~~~~~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 360 (833)
.. .++|++|++++|++++ +|. .+++|++|++++|.+.+...
T Consensus 88 ~~---~~~L~~L~l~~n~l~~------------------------------lp~----~~~~L~~L~l~~n~l~~l~~-- 128 (454)
T 1jl5_A 88 EL---PPHLESLVASCNSLTE------------------------------LPE----LPQSLKSLLVDNNNLKALSD-- 128 (454)
T ss_dssp SC---CTTCSEEECCSSCCSS------------------------------CCC----CCTTCCEEECCSSCCSCCCS--
T ss_pred CC---cCCCCEEEccCCcCCc------------------------------ccc----ccCCCcEEECCCCccCcccC--
Confidence 21 2345555555555443 322 12445555555554443211
Q ss_pred ccCCccccEEEccCccCCCCCChhhcccccccEEeecCCccccccchhHHhhcccccEEEcccccccccCCccccccCCC
Q 048006 361 WVPPFQLIIISLSSCKIGPHFPKWLQTQNQIELLDISNTGISDTIPDWFWNLSNKFSFLDLASNQIKGKLPNLSSRFGTS 440 (833)
Q Consensus 361 ~~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~~ 440 (833)
..++|++|++++|.+++ +| .+..+++|++|++++|++++ +|..+ .+|++|++++|++++ +|. ...+++
T Consensus 129 --~~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~~----~~L~~L~L~~n~l~~-l~~--~~~l~~ 196 (454)
T 1jl5_A 129 --LPPLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKK-LPDLP----PSLEFIAAGNNQLEE-LPE--LQNLPF 196 (454)
T ss_dssp --CCTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSC-CCCCC----TTCCEEECCSSCCSS-CCC--CTTCTT
T ss_pred --CCCCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCcc-cCCCc----ccccEEECcCCcCCc-Ccc--ccCCCC
Confidence 01355555555555554 44 36666666666666666664 33322 257777777776665 332 133334
Q ss_pred CCceecccCcccccCCCCCCCCceeecCCCcccccccccccccCCcccEEEcCCCcCcCCCCCcccCCCCCcEEEccCCc
Q 048006 441 NPGIDISSNHFEGLIPPLPSNSSFLNLSKNRFSGSISFLCSISGSKLTYVDLSSNLLSGKLPDCWWTFDSLVILNLENNS 520 (833)
Q Consensus 441 l~~l~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~ 520 (833)
++.+++++|.+++ +|..+ ++|++|++++|.++ .+| .+..+++|++|++++|+
T Consensus 197 L~~L~l~~N~l~~-l~~~~-------------------------~~L~~L~l~~n~l~-~lp-~~~~l~~L~~L~l~~N~ 248 (454)
T 1jl5_A 197 LTAIYADNNSLKK-LPDLP-------------------------LSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNL 248 (454)
T ss_dssp CCEEECCSSCCSS-CCCCC-------------------------TTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSC
T ss_pred CCEEECCCCcCCc-CCCCc-------------------------CcccEEECcCCcCC-ccc-ccCCCCCCCEEECCCCc
Confidence 4444444444433 11111 35666666666666 444 36666667777777766
Q ss_pred ccccCCCCccCcCCccEEEcccCcCccccCccccCCCCCcEeccCCCccCCCCCcchhhcCCccceEEecCCcccccccc
Q 048006 521 FSGRIPDSMGFLQNIQTLSLHNNRLTGELSSSFRNCSQLRLLDLGKNALYGEIPTWMGESLSNLIVLSLKSNKFHGKIPF 600 (833)
Q Consensus 521 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~~~ 600 (833)
+++ +|.. +++|++|++++|++++ +|.. .++|++|++++|++++ +|. ..++|++|++++|++++. +
T Consensus 249 l~~-l~~~---~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~N~l~~-l~~----~~~~L~~L~l~~N~l~~i-~- 313 (454)
T 1jl5_A 249 LKT-LPDL---PPSLEALNVRDNYLTD-LPEL---PQSLTFLDVSENIFSG-LSE----LPPNLYYLNASSNEIRSL-C- 313 (454)
T ss_dssp CSS-CCSC---CTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSE-ESC----CCTTCCEEECCSSCCSEE-C-
T ss_pred CCc-cccc---ccccCEEECCCCcccc-cCcc---cCcCCEEECcCCccCc-ccC----cCCcCCEEECcCCcCCcc-c-
Confidence 664 3322 3566777777776664 3332 2566777777777663 332 124667777777776641 1
Q ss_pred cccCC-CCCCEEeccCCcCcccCCccccccccccccCCCCcccccceEEeeccCcchhccccCcccEEEccCCcCCCCCc
Q 048006 601 QLCQL-AFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKDKLMLTWKGSEREYRSTLGLVKSLELSNNNLNGAVP 679 (833)
Q Consensus 601 ~l~~l-~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p 679 (833)
.+ ++|+.|++++|++++ +|..+ ++|+.|++++|+++ .+|
T Consensus 314 ---~~~~~L~~L~Ls~N~l~~-lp~~~-----------------------------------~~L~~L~L~~N~l~-~lp 353 (454)
T 1jl5_A 314 ---DLPPSLEELNVSNNKLIE-LPALP-----------------------------------PRLERLIASFNHLA-EVP 353 (454)
T ss_dssp ---CCCTTCCEEECCSSCCSC-CCCCC-----------------------------------TTCCEEECCSSCCS-CCC
T ss_pred ---CCcCcCCEEECCCCcccc-ccccC-----------------------------------CcCCEEECCCCccc-ccc
Confidence 22 467777777777764 34321 22367777777776 355
Q ss_pred hhhhcccCCcEEECCCccccc--cCCcccCCCCCCCEEeCCCCcCcccCCccccCCCCCCEEECcCCcCcc--CCCC
Q 048006 680 EEIMDLVGLVALNLSKNHLTG--QISPKIGQLKSLDFLDLSRNQLVGGIPSSLSQLSGLSVMDLSYNNLSG--KIPT 752 (833)
Q Consensus 680 ~~l~~l~~L~~L~Ls~N~l~~--~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g--~ip~ 752 (833)
. .+++|++|++++|++++ .+|.++.. ++.|.+.+.+|.. +++|++||+++|+++| .+|.
T Consensus 354 ~---~l~~L~~L~L~~N~l~~l~~ip~~l~~--------L~~n~~~~~i~~~---~~~L~~L~ls~N~l~~~~~iP~ 416 (454)
T 1jl5_A 354 E---LPQNLKQLHVEYNPLREFPDIPESVED--------LRMNSHLAEVPEL---PQNLKQLHVETNPLREFPDIPE 416 (454)
T ss_dssp C---CCTTCCEEECCSSCCSSCCCCCTTCCE--------EECCC---------------------------------
T ss_pred c---hhhhccEEECCCCCCCcCCCChHHHHh--------hhhcccccccccc---cCcCCEEECCCCcCCccccchh
Confidence 4 35677777777777776 55554432 2345566666653 3678888888888887 6664
No 30
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=1.3e-36 Score=337.04 Aligned_cols=373 Identities=18% Similarity=0.149 Sum_probs=248.5
Q ss_pred CccccCCCCCCEEeCCCCCCCCCCccccccCCCCCCEEEccCCCCCCCCCcccCCccccceecccCccCCCCCCcccccC
Q 048006 80 SPALLKLHDLRHLNLSFNDFSGSPIPEFIGSLSKLRYLDLFGTVFAGPIPPQLGNLSRLQHLDLGSNYLFSTGNLDWLSH 159 (833)
Q Consensus 80 ~~~l~~l~~L~~L~Ls~n~~~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~~~~~~~~~~l~~ 159 (833)
+..++++++|++|++++|.+++ +| .++.+++|++|+|++|.+++ +| ++.+++|++|++++|.+... .+++
T Consensus 35 ~~~~~~l~~L~~L~Ls~n~l~~--~~-~l~~l~~L~~L~Ls~n~l~~-~~--~~~l~~L~~L~Ls~N~l~~~----~~~~ 104 (457)
T 3bz5_A 35 TISEEQLATLTSLDCHNSSITD--MT-GIEKLTGLTKLICTSNNITT-LD--LSQNTNLTYLACDSNKLTNL----DVTP 104 (457)
T ss_dssp EEEHHHHTTCCEEECCSSCCCC--CT-TGGGCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCC----CCTT
T ss_pred ccChhHcCCCCEEEccCCCccc--Ch-hhcccCCCCEEEccCCcCCe-Ec--cccCCCCCEEECcCCCCcee----ecCC
Confidence 4467788899999999998885 45 68889999999999999886 44 88889999999999988653 2788
Q ss_pred CCCCcEEecCCCCCCCCchhHHhhcCCCCCCEEEccCCCCCCCCCccccccccCCCCCEEEccCCcCCCCCCCccccccc
Q 048006 160 LSYLRYLNLDESNLANSSDWFQVIGKLHSLKTLSLHSCYLPPVIPLSLNHLNSSTSLETLVLSDNNLTSSIYPWLPNISS 239 (833)
Q Consensus 160 l~~L~~L~Ls~n~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~ 239 (833)
+++|++|++++|.++++ + ++.+++|++|++++|.+++. + +.. +++|++|++++|...+.+ .+..+++
T Consensus 105 l~~L~~L~L~~N~l~~l---~--~~~l~~L~~L~l~~N~l~~l-~----l~~-l~~L~~L~l~~n~~~~~~--~~~~l~~ 171 (457)
T 3bz5_A 105 LTKLTYLNCDTNKLTKL---D--VSQNPLLTYLNCARNTLTEI-D----VSH-NTQLTELDCHLNKKITKL--DVTPQTQ 171 (457)
T ss_dssp CTTCCEEECCSSCCSCC---C--CTTCTTCCEEECTTSCCSCC-C----CTT-CTTCCEEECTTCSCCCCC--CCTTCTT
T ss_pred CCcCCEEECCCCcCCee---c--CCCCCcCCEEECCCCcccee-c----ccc-CCcCCEEECCCCCccccc--ccccCCc
Confidence 88888999988888774 2 77888888888888888774 2 222 377888888888655544 3556666
Q ss_pred CCcEEEccCccccccccccccCCCCCcEEECcCCcccccccccccCCCCCcEEEccCCCCCchhhHHHhhcCCccccCCc
Q 048006 240 IFISIDLGFNQLQGSIPESFQHMVYLEHLRLSFNELEGGIPKFFGNMCSLITLNLSNNKLSGQLSEIIQNLSSGCLENSL 319 (833)
Q Consensus 240 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~~~~~~L 319 (833)
|++|++++|++++. | +..+++|++|++++|++++. .++.+++|++|++++|++++ +|
T Consensus 172 -L~~L~ls~n~l~~l-~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--------------- 228 (457)
T 3bz5_A 172 -LTTLDCSFNKITEL-D--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--------------- 228 (457)
T ss_dssp -CCEEECCSSCCCCC-C--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC---------------
T ss_pred -CCEEECCCCcccee-c--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC---------------
Confidence 77777777777763 3 66777777777777777754 36677777777777777665 22
Q ss_pred cEEEcccccccccChhhhcCCCCCCEEECcCCccccccCCCccCCccccEEEccCccCCCCCChhhcccccccEEeecCC
Q 048006 320 KSLYLENSLTGVISESFFSNISNLKELHLANNPLVLKLSHDWVPPFQLIIISLSSCKIGPHFPKWLQTQNQIELLDISNT 399 (833)
Q Consensus 320 ~~L~L~~~~~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~n 399 (833)
+..+++|++|++++|++.+.. ...+++|+.|+++++ +|+.|++++|
T Consensus 229 -----------------~~~l~~L~~L~l~~N~l~~~~---~~~l~~L~~L~l~~n--------------~L~~L~l~~n 274 (457)
T 3bz5_A 229 -----------------VTPLTQLTYFDCSVNPLTELD---VSTLSKLTTLHCIQT--------------DLLEIDLTHN 274 (457)
T ss_dssp -----------------CTTCTTCSEEECCSSCCSCCC---CTTCTTCCEEECTTC--------------CCSCCCCTTC
T ss_pred -----------------ccccCCCCEEEeeCCcCCCcC---HHHCCCCCEEeccCC--------------CCCEEECCCC
Confidence 334455555555555554321 112222333332221 1233334444
Q ss_pred ccccccchhHHhhcccccEEEcccccccccCCccccccCCCCCceecccCcccccCCCCCCCCceeecCCCccccccccc
Q 048006 400 GISDTIPDWFWNLSNKFSFLDLASNQIKGKLPNLSSRFGTSNPGIDISSNHFEGLIPPLPSNSSFLNLSKNRFSGSISFL 479 (833)
Q Consensus 400 ~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~ 479 (833)
.+. +.+|. ..+++++.+++++|...+.+|....+++.+++++|
T Consensus 275 ~~~-------------------------~~~~~---~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~--------- 317 (457)
T 3bz5_A 275 TQL-------------------------IYFQA---EGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQN--------- 317 (457)
T ss_dssp TTC-------------------------CEEEC---TTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTC---------
T ss_pred ccC-------------------------Ccccc---cccccCCEEECCCCcccceeccCCCcceEechhhc---------
Confidence 333 33321 22234444455555444444444455666666554
Q ss_pred ccccCCcccEEEcCCCcCcCCCCCcccCCCCCcEEEccCCcccccCCCCccCcCCccEEEcccCcCccccCccccCCCCC
Q 048006 480 CSISGSKLTYVDLSSNLLSGKLPDCWWTFDSLVILNLENNSFSGRIPDSMGFLQNIQTLSLHNNRLTGELSSSFRNCSQL 559 (833)
Q Consensus 480 ~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 559 (833)
++|++|++++|++++. + +..+++|+.|++++|++++ ++.|..|++++|.+.|. ..+..|
T Consensus 318 -----~~L~~L~L~~N~l~~l-~--l~~l~~L~~L~l~~N~l~~--------l~~L~~L~l~~n~l~g~-----~~~~~l 376 (457)
T 3bz5_A 318 -----PKLVYLYLNNTELTEL-D--VSHNTKLKSLSCVNAHIQD--------FSSVGKIPALNNNFEAE-----GQTITM 376 (457)
T ss_dssp -----TTCCEEECTTCCCSCC-C--CTTCTTCSEEECCSSCCCB--------CTTGGGSSGGGTSEEEE-----EEEEEC
T ss_pred -----ccCCEEECCCCccccc-c--cccCCcCcEEECCCCCCCC--------ccccccccccCCcEEec-----ceeeec
Confidence 6788888888888874 2 7788888888888888875 24566777888888865 345567
Q ss_pred cEeccCCCccCCCCCcchhhcCCccceEEec
Q 048006 560 RLLDLGKNALYGEIPTWMGESLSNLIVLSLK 590 (833)
Q Consensus 560 ~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~ 590 (833)
+.+++++|+++|.+|..+.....++....-+
T Consensus 377 ~~l~l~~N~l~g~ip~~~~~~~~~~~~~~~~ 407 (457)
T 3bz5_A 377 PKETLTNNSLTIAVSPDLLDQFGNPMNIEPG 407 (457)
T ss_dssp CCBCCBTTBEEEECCTTCBCTTSCCCEEEES
T ss_pred CccccccCcEEEEcChhHhcccCceeeccCC
Confidence 7888888888888887665444444444433
No 31
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=6.1e-36 Score=336.58 Aligned_cols=257 Identities=19% Similarity=0.169 Sum_probs=173.9
Q ss_pred CcccEEEcCCCcCcCCCCCcccCCCCCcEEEccCCcccccCCCCccCcCCccEEEcccCcCccccCccccCCCCCcEecc
Q 048006 485 SKLTYVDLSSNLLSGKLPDCWWTFDSLVILNLENNSFSGRIPDSMGFLQNIQTLSLHNNRLTGELSSSFRNCSQLRLLDL 564 (833)
Q Consensus 485 ~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 564 (833)
++|++|++++|.+++..+..|..+++|++|++++|.+++..+..|..+++|++|++++|++++..+..|..+++|+.|++
T Consensus 104 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l 183 (477)
T 2id5_A 104 SNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRL 183 (477)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEE
T ss_pred CCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeC
Confidence 45566666666666555556666666666666666666666666666666666666666666555555666666666666
Q ss_pred CCCccCCCCCcchhhcCCccceEEecCCcccccccccccCCCCCCEEeccCCcCcccCCccccccccccccCCCCccccc
Q 048006 565 GKNALYGEIPTWMGESLSNLIVLSLKSNKFHGKIPFQLCQLAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKD 644 (833)
Q Consensus 565 ~~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~ 644 (833)
++|.+.+ ++...+..+++|++|++++|.+.+.+|.......+|+.|++++|++++..+..|..+++|
T Consensus 184 ~~n~i~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L------------ 250 (477)
T 2id5_A 184 RHLNINA-IRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYL------------ 250 (477)
T ss_dssp ESCCCCE-ECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTC------------
T ss_pred CCCcCcE-eChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCcccc------------
Confidence 6666653 333223356666666666666665555555555577777777777764333445544444
Q ss_pred ceEEeeccCcchhccccCcccEEEccCCcCCCCCchhhhcccCCcEEECCCccccccCCcccCCCCCCCEEeCCCCcCcc
Q 048006 645 KLMLTWKGSEREYRSTLGLVKSLELSNNNLNGAVPEEIMDLVGLVALNLSKNHLTGQISPKIGQLKSLDFLDLSRNQLVG 724 (833)
Q Consensus 645 ~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 724 (833)
+.|+|++|++++..+..|..+++|++|+|++|++++..|..|..+++|+.|+|++|++++
T Consensus 251 --------------------~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 310 (477)
T 2id5_A 251 --------------------RFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTT 310 (477)
T ss_dssp --------------------CEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSC
T ss_pred --------------------CeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCce
Confidence 777777777776666677788888888888888888888888888888888888888887
Q ss_pred cCCccccCCCCCCEEECcCCcCccCCCCccccCccccccccCCCCCCCCC
Q 048006 725 GIPSSLSQLSGLSVMDLSYNNLSGKIPTVTQLQSFNDTVYAGNPELCGLP 774 (833)
Q Consensus 725 ~~p~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~l~~~~~~gn~~lc~~~ 774 (833)
..+..|..+++|++|++++|++.+.++..+.+.......+.++...|..|
T Consensus 311 ~~~~~~~~l~~L~~L~l~~N~l~c~c~~~~~~~~~~~~~~~~~~~~C~~p 360 (477)
T 2id5_A 311 LEESVFHSVGNLETLILDSNPLACDCRLLWVFRRRWRLNFNRQQPTCATP 360 (477)
T ss_dssp CCGGGBSCGGGCCEEECCSSCEECSGGGHHHHTTTTSSCCTTCCCBEEES
T ss_pred eCHhHcCCCcccCEEEccCCCccCccchHhHHhhhhccccCccCceeCCc
Confidence 77777888888888888888888877655444444445566777777544
No 32
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=1.7e-35 Score=328.14 Aligned_cols=182 Identities=21% Similarity=0.194 Sum_probs=114.6
Q ss_pred CcccEEEcCCCcCcCCCCCcccCCCCCcEEEccCCcccccCCCCccCcCCccEEEcccCcCccccCccccCCCCCcEecc
Q 048006 485 SKLTYVDLSSNLLSGKLPDCWWTFDSLVILNLENNSFSGRIPDSMGFLQNIQTLSLHNNRLTGELSSSFRNCSQLRLLDL 564 (833)
Q Consensus 485 ~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 564 (833)
++|++|++++|++++ +| +..+++|+.|++++|++++.. ++.+++|+.|++++| +|+.|++
T Consensus 212 ~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~---~~~l~~L~~L~l~~n--------------~L~~L~l 271 (457)
T 3bz5_A 212 IQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELD---VSTLSKLTTLHCIQT--------------DLLEIDL 271 (457)
T ss_dssp TTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCC---CTTCTTCCEEECTTC--------------CCSCCCC
T ss_pred CCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcC---HHHCCCCCEEeccCC--------------CCCEEEC
Confidence 455555555555554 23 445555555555555555432 233445555554443 2344555
Q ss_pred CCCccCCCCCcchhhcCCccceEEecCCcccccccccccCCCCCCEEeccCCcCcccCCccccccccccccCCCCccccc
Q 048006 565 GKNALYGEIPTWMGESLSNLIVLSLKSNKFHGKIPFQLCQLAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKD 644 (833)
Q Consensus 565 ~~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~ 644 (833)
++|++.+.+|. ..+++|+.|++++|...+.+|. ..++|+.|++++|
T Consensus 272 ~~n~~~~~~~~---~~l~~L~~L~Ls~n~~l~~l~~---~~~~L~~L~l~~~---------------------------- 317 (457)
T 3bz5_A 272 THNTQLIYFQA---EGCRKIKELDVTHNTQLYLLDC---QAAGITELDLSQN---------------------------- 317 (457)
T ss_dssp TTCTTCCEEEC---TTCTTCCCCCCTTCTTCCEEEC---TTCCCSCCCCTTC----------------------------
T ss_pred CCCccCCcccc---cccccCCEEECCCCcccceecc---CCCcceEechhhc----------------------------
Confidence 55555544442 1345555555555554444442 2233444444333
Q ss_pred ceEEeeccCcchhccccCcccEEEccCCcCCCCCchhhhcccCCcEEECCCccccccCCcccCCCCCCCEEeCCCCcCcc
Q 048006 645 KLMLTWKGSEREYRSTLGLVKSLELSNNNLNGAVPEEIMDLVGLVALNLSKNHLTGQISPKIGQLKSLDFLDLSRNQLVG 724 (833)
Q Consensus 645 ~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 724 (833)
++|+.|++++|++++. + ++.+++|+.|++++|++++ ++.|+.|++++|.++|
T Consensus 318 -----------------~~L~~L~L~~N~l~~l-~--l~~l~~L~~L~l~~N~l~~--------l~~L~~L~l~~n~l~g 369 (457)
T 3bz5_A 318 -----------------PKLVYLYLNNTELTEL-D--VSHNTKLKSLSCVNAHIQD--------FSSVGKIPALNNNFEA 369 (457)
T ss_dssp -----------------TTCCEEECTTCCCSCC-C--CTTCTTCSEEECCSSCCCB--------CTTGGGSSGGGTSEEE
T ss_pred -----------------ccCCEEECCCCccccc-c--cccCCcCcEEECCCCCCCC--------ccccccccccCCcEEe
Confidence 3459999999999974 3 8999999999999999986 2567888999999997
Q ss_pred cCCccccCCCCCCEEECcCCcCccCCCCc
Q 048006 725 GIPSSLSQLSGLSVMDLSYNNLSGKIPTV 753 (833)
Q Consensus 725 ~~p~~l~~l~~L~~L~ls~N~l~g~ip~~ 753 (833)
. ..+..|..+++++|+++|.||..
T Consensus 370 ~-----~~~~~l~~l~l~~N~l~g~ip~~ 393 (457)
T 3bz5_A 370 E-----GQTITMPKETLTNNSLTIAVSPD 393 (457)
T ss_dssp E-----EEEEECCCBCCBTTBEEEECCTT
T ss_pred c-----ceeeecCccccccCcEEEEcChh
Confidence 6 24456888999999999999964
No 33
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=2.2e-34 Score=322.24 Aligned_cols=214 Identities=27% Similarity=0.401 Sum_probs=156.7
Q ss_pred CcccEEEcCCCcCcCCCCCcccCCCCCcEEEccCCcccccCCCCccCcCCccEEEcccCcCccccCccccCCCCCcEecc
Q 048006 485 SKLTYVDLSSNLLSGKLPDCWWTFDSLVILNLENNSFSGRIPDSMGFLQNIQTLSLHNNRLTGELSSSFRNCSQLRLLDL 564 (833)
Q Consensus 485 ~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 564 (833)
++|++|++++|.+++. ..+..+++|++|++++|.+.+..| ++.+++|++|++++|++++. ..+..+++|++|++
T Consensus 177 ~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l 250 (466)
T 1o6v_A 177 TTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDL 250 (466)
T ss_dssp TTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEEC
T ss_pred CCCCEEECcCCcCCCC--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEEC
Confidence 5566666666666543 235666777777777777765544 56677777777777777643 35677778888888
Q ss_pred CCCccCCCCCcchhhcCCccceEEecCCcccccccccccCCCCCCEEeccCCcCcccCCccccccccccccCCCCccccc
Q 048006 565 GKNALYGEIPTWMGESLSNLIVLSLKSNKFHGKIPFQLCQLAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKD 644 (833)
Q Consensus 565 ~~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~ 644 (833)
++|++.+..| +. .+++|++|++++|.+++..+ +..+++|+.|++++|++.+..| +..+++
T Consensus 251 ~~n~l~~~~~--~~-~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~------------- 310 (466)
T 1o6v_A 251 ANNQISNLAP--LS-GLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKN------------- 310 (466)
T ss_dssp CSSCCCCCGG--GT-TCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTT-------------
T ss_pred CCCccccchh--hh-cCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCC-------------
Confidence 8887774333 33 57788888888888875443 7778888888888888875433 444443
Q ss_pred ceEEeeccCcchhccccCcccEEEccCCcCCCCCchhhhcccCCcEEECCCccccccCCcccCCCCCCCEEeCCCCcCcc
Q 048006 645 KLMLTWKGSEREYRSTLGLVKSLELSNNNLNGAVPEEIMDLVGLVALNLSKNHLTGQISPKIGQLKSLDFLDLSRNQLVG 724 (833)
Q Consensus 645 ~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 724 (833)
|+.|++++|++++..| +..+++|++|++++|++++. ..+..+++|+.|++++|++++
T Consensus 311 -------------------L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~ 367 (466)
T 1o6v_A 311 -------------------LTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISD 367 (466)
T ss_dssp -------------------CSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCB
T ss_pred -------------------CCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCc
Confidence 4888888888886655 77888899999999988865 578888999999999999988
Q ss_pred cCCccccCCCCCCEEECcCCcCccC
Q 048006 725 GIPSSLSQLSGLSVMDLSYNNLSGK 749 (833)
Q Consensus 725 ~~p~~l~~l~~L~~L~ls~N~l~g~ 749 (833)
..| +..+++|+.|++++|++++.
T Consensus 368 ~~~--~~~l~~L~~L~l~~n~~~~~ 390 (466)
T 1o6v_A 368 LTP--LANLTRITQLGLNDQAWTNA 390 (466)
T ss_dssp CGG--GTTCTTCCEEECCCEEEECC
T ss_pred cch--hhcCCCCCEEeccCCcccCC
Confidence 776 78888999999999998874
No 34
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=9.6e-36 Score=314.06 Aligned_cols=259 Identities=31% Similarity=0.522 Sum_probs=244.3
Q ss_pred CcccEEEcCCCcCcC--CCCCcccCCCCCcEEEccC-CcccccCCCCccCcCCccEEEcccCcCccccCccccCCCCCcE
Q 048006 485 SKLTYVDLSSNLLSG--KLPDCWWTFDSLVILNLEN-NSFSGRIPDSMGFLQNIQTLSLHNNRLTGELSSSFRNCSQLRL 561 (833)
Q Consensus 485 ~~L~~L~ls~n~l~~--~~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 561 (833)
.+++.|++++|.+++ .+|..+..+++|++|++++ |.+.+.+|..++.+++|++|++++|++++.+|..|..+++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 579999999999998 8999999999999999995 9999999999999999999999999999999999999999999
Q ss_pred eccCCCccCCCCCcchhhcCCccceEEecCCcccccccccccCCC-CCCEEeccCCcCcccCCccccccccccccCCCCc
Q 048006 562 LDLGKNALYGEIPTWMGESLSNLIVLSLKSNKFHGKIPFQLCQLA-FLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDP 640 (833)
Q Consensus 562 L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~-~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~ 640 (833)
|++++|.+.+.+|..+. .+++|++|++++|++++.+|..+..++ +|+.|++++|++++.+|..+..++ |
T Consensus 130 L~Ls~N~l~~~~p~~~~-~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L-------- 199 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSIS-SLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-L-------- 199 (313)
T ss_dssp EECCSSEEESCCCGGGG-GCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-C--------
T ss_pred EeCCCCccCCcCChHHh-cCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-c--------
Confidence 99999999989998887 699999999999999999999999998 999999999999999998887765 5
Q ss_pred ccccceEEeeccCcchhccccCcccEEEccCCcCCCCCchhhhcccCCcEEECCCccccccCCcccCCCCCCCEEeCCCC
Q 048006 641 TIKDKLMLTWKGSEREYRSTLGLVKSLELSNNNLNGAVPEEIMDLVGLVALNLSKNHLTGQISPKIGQLKSLDFLDLSRN 720 (833)
Q Consensus 641 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N 720 (833)
+.|++++|++++.+|..+..+++|++|+|++|++++.+|. +..+++|++|+|++|
T Consensus 200 ------------------------~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N 254 (313)
T 1ogq_A 200 ------------------------AFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNN 254 (313)
T ss_dssp ------------------------SEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSS
T ss_pred ------------------------cEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCC
Confidence 9999999999999999999999999999999999977766 888999999999999
Q ss_pred cCcccCCccccCCCCCCEEECcCCcCccCCCCccccCccccccccCCCCCCCCCCCCCC
Q 048006 721 QLVGGIPSSLSQLSGLSVMDLSYNNLSGKIPTVTQLQSFNDTVYAGNPELCGLPLPNKC 779 (833)
Q Consensus 721 ~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~l~~~~~~gn~~lc~~~~~~~c 779 (833)
++++.+|..+..+++|++|++++|+++|.+|....+..+..+.+.|||++||.|++ .|
T Consensus 255 ~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~~lc~~p~~-~C 312 (313)
T 1ogq_A 255 RIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPLP-AC 312 (313)
T ss_dssp CCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEEESTTSS-CC
T ss_pred cccCcCChHHhcCcCCCEEECcCCcccccCCCCccccccChHHhcCCCCccCCCCC-CC
Confidence 99999999999999999999999999999999988999999999999999998765 56
No 35
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=4.9e-34 Score=319.35 Aligned_cols=119 Identities=24% Similarity=0.365 Sum_probs=60.3
Q ss_pred CCCCEEEccCCcCCCCCCCcccccccCCcEEEccCccccccccccccCCCCCcEEECcCCcccccccccccCCCCCcEEE
Q 048006 214 TSLETLVLSDNNLTSSIYPWLPNISSIFISIDLGFNQLQGSIPESFQHMVYLEHLRLSFNELEGGIPKFFGNMCSLITLN 293 (833)
Q Consensus 214 ~~L~~L~Ls~n~l~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 293 (833)
++++.|+++++.+.. +| .+..+++ |++|++++|.+++..+ +.++++|++|++++|.+++..+ +.++++|++|+
T Consensus 46 ~~l~~L~l~~~~i~~-l~-~~~~l~~-L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~ 118 (466)
T 1o6v_A 46 DQVTTLQADRLGIKS-ID-GVEYLNN-LTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLT 118 (466)
T ss_dssp HTCCEEECCSSCCCC-CT-TGGGCTT-CCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEE
T ss_pred ccccEEecCCCCCcc-Cc-chhhhcC-CCEEECCCCccCCchh--hhccccCCEEECCCCccccChh--hcCCCCCCEEE
Confidence 445555555554443 22 2444444 5555555555554332 5555666666666665554333 55556666666
Q ss_pred ccCCCCCchhhHHHhhcCCccccCCccEEEcccccccccChhhhcCCCCCCEEECc
Q 048006 294 LSNNKLSGQLSEIIQNLSSGCLENSLKSLYLENSLTGVISESFFSNISNLKELHLA 349 (833)
Q Consensus 294 Ls~n~l~~~~~~~l~~l~~~~~~~~L~~L~L~~~~~~~i~~~~~~~l~~L~~L~L~ 349 (833)
+++|.+++..+ +..++ +|++|++++|.+..++. +..+++|++|+++
T Consensus 119 L~~n~l~~~~~--~~~l~------~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~ 164 (466)
T 1o6v_A 119 LFNNQITDIDP--LKNLT------NLNRLELSSNTISDISA--LSGLTSLQQLSFG 164 (466)
T ss_dssp CCSSCCCCCGG--GTTCT------TCSEEEEEEEEECCCGG--GTTCTTCSEEEEE
T ss_pred CCCCCCCCChH--HcCCC------CCCEEECCCCccCCChh--hccCCcccEeecC
Confidence 66665554432 44444 45555554444444432 4555555555553
No 36
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=8e-34 Score=319.33 Aligned_cols=258 Identities=24% Similarity=0.211 Sum_probs=230.8
Q ss_pred CCcccEEEcCCCcCcCCCCCcccCCCCCcEEEccCCcccccCCCCccCcCCccEEEcccCcCccccCccccCCCCCcEec
Q 048006 484 GSKLTYVDLSSNLLSGKLPDCWWTFDSLVILNLENNSFSGRIPDSMGFLQNIQTLSLHNNRLTGELSSSFRNCSQLRLLD 563 (833)
Q Consensus 484 ~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 563 (833)
+++|++|++++|.+++..+..|..+++|++|++++|.+.+..+..|..+++|++|++++|.+++..+..|.++++|++|+
T Consensus 79 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 158 (477)
T 2id5_A 79 LFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLT 158 (477)
T ss_dssp CTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEE
T ss_pred CccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEE
Confidence 37788888888888877777789999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCccCCCCCcchhhcCCccceEEecCCcccccccccccCCCCCCEEeccCCcCcccCCccccccccccccCCCCcccc
Q 048006 564 LGKNALYGEIPTWMGESLSNLIVLSLKSNKFHGKIPFQLCQLAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIK 643 (833)
Q Consensus 564 L~~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~ 643 (833)
+++|+++ .+|...+..+++|+.|++++|.+.+..+..+..+++|+.|++++|++.+.+|.......
T Consensus 159 l~~n~l~-~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~------------- 224 (477)
T 2id5_A 159 LEKCNLT-SIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGL------------- 224 (477)
T ss_dssp EESCCCS-SCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTC-------------
T ss_pred CCCCcCc-ccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCc-------------
Confidence 9999998 66665555799999999999999988888999999999999999998877766544333
Q ss_pred cceEEeeccCcchhccccCcccEEEccCCcCCCCCchhhhcccCCcEEECCCccccccCCcccCCCCCCCEEeCCCCcCc
Q 048006 644 DKLMLTWKGSEREYRSTLGLVKSLELSNNNLNGAVPEEIMDLVGLVALNLSKNHLTGQISPKIGQLKSLDFLDLSRNQLV 723 (833)
Q Consensus 644 ~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 723 (833)
+|+.|++++|++++..+..+..+++|++|+|++|.+++..+..|..+++|+.|+|++|+++
T Consensus 225 -------------------~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 285 (477)
T 2id5_A 225 -------------------NLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLA 285 (477)
T ss_dssp -------------------CCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCS
T ss_pred -------------------cccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccc
Confidence 3499999999999666678999999999999999999988889999999999999999999
Q ss_pred ccCCccccCCCCCCEEECcCCcCccCCCCc-cccCccccccccCCCCCCCCC
Q 048006 724 GGIPSSLSQLSGLSVMDLSYNNLSGKIPTV-TQLQSFNDTVYAGNPELCGLP 774 (833)
Q Consensus 724 ~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~-~~~~~l~~~~~~gn~~lc~~~ 774 (833)
+..|..|..+++|++|++++|++++..+.. ..+..+..+.+.+||+.|+|+
T Consensus 286 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~ 337 (477)
T 2id5_A 286 VVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCR 337 (477)
T ss_dssp EECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSGG
T ss_pred eECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCccc
Confidence 999999999999999999999999866543 456677888899999999875
No 37
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=1.5e-33 Score=308.08 Aligned_cols=333 Identities=20% Similarity=0.196 Sum_probs=211.3
Q ss_pred CccEEEcccccccccChhhhcCCCCCCEEECcCCccccccCCCccCCccccEEEccCccCCCCCChhhcccccccEEeec
Q 048006 318 SLKSLYLENSLTGVISESFFSNISNLKELHLANNPLVLKLSHDWVPPFQLIIISLSSCKIGPHFPKWLQTQNQIELLDIS 397 (833)
Q Consensus 318 ~L~~L~L~~~~~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls 397 (833)
+++.|++.++.++.+|...|..+++|++|++++|.+....+..|..+++|++|++++|.+++..|..+..+++|++|+++
T Consensus 46 ~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 125 (390)
T 3o6n_A 46 NQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLE 125 (390)
T ss_dssp CCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECC
Confidence 34444444444444555455566666666666666665555555555555555555555555556666666666666666
Q ss_pred CCccccccchhHHhhcccccEEEcccccccccCCccccccCCCCCceecccCcccccCCCCCCCCceeecCCCccccccc
Q 048006 398 NTGISDTIPDWFWNLSNKFSFLDLASNQIKGKLPNLSSRFGTSNPGIDISSNHFEGLIPPLPSNSSFLNLSKNRFSGSIS 477 (833)
Q Consensus 398 ~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~ 477 (833)
+|+++...+..|..
T Consensus 126 ~n~l~~l~~~~~~~------------------------------------------------------------------ 139 (390)
T 3o6n_A 126 RNDLSSLPRGIFHN------------------------------------------------------------------ 139 (390)
T ss_dssp SSCCCCCCTTTTTT------------------------------------------------------------------
T ss_pred CCccCcCCHHHhcC------------------------------------------------------------------
Confidence 66655322221111
Q ss_pred ccccccCCcccEEEcCCCcCcCCCCCcccCCCCCcEEEccCCcccccCCCCccCcCCccEEEcccCcCccccCccccCCC
Q 048006 478 FLCSISGSKLTYVDLSSNLLSGKLPDCWWTFDSLVILNLENNSFSGRIPDSMGFLQNIQTLSLHNNRLTGELSSSFRNCS 557 (833)
Q Consensus 478 ~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 557 (833)
+++|++|++++|.+++..+..|..+++|++|++++|.+++. .+..+++|++|++++|.+++. ...+
T Consensus 140 ------l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l~~~-----~~~~ 205 (390)
T 3o6n_A 140 ------TPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLSTL-----AIPI 205 (390)
T ss_dssp ------CTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCCSEE-----ECCS
T ss_pred ------CCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeeccccccccc-----CCCC
Confidence 24555555555555555555566666666666666666543 244556666666666666532 2334
Q ss_pred CCcEeccCCCccCCCCCcchhhcCCccceEEecCCcccccccccccCCCCCCEEeccCCcCcccCCccccccccccccCC
Q 048006 558 QLRLLDLGKNALYGEIPTWMGESLSNLIVLSLKSNKFHGKIPFQLCQLAFLQVLDLSLNNISGKIPKCFNNFTAMTQERS 637 (833)
Q Consensus 558 ~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~ 637 (833)
+|++|++++|.+. .+|.. ..++|++|++++|.+++. ..+..+++|+.|++++|.+.+..|..|..+++|
T Consensus 206 ~L~~L~l~~n~l~-~~~~~---~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L----- 274 (390)
T 3o6n_A 206 AVEELDASHNSIN-VVRGP---VNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRL----- 274 (390)
T ss_dssp SCSEEECCSSCCC-EEECC---CCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSC-----
T ss_pred cceEEECCCCeee-ecccc---ccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccccccC-----
Confidence 6677777777765 44443 245677777777777643 456677777777777777776666666665555
Q ss_pred CCcccccceEEeeccCcchhccccCcccEEEccCCcCCCCCchhhhcccCCcEEECCCccccccCCcccCCCCCCCEEeC
Q 048006 638 SDPTIKDKLMLTWKGSEREYRSTLGLVKSLELSNNNLNGAVPEEIMDLVGLVALNLSKNHLTGQISPKIGQLKSLDFLDL 717 (833)
Q Consensus 638 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L 717 (833)
+.|++++|++++ +|..+..+++|++|+|++|+++ .+|..+..+++|+.|++
T Consensus 275 ---------------------------~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L 325 (390)
T 3o6n_A 275 ---------------------------ERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYL 325 (390)
T ss_dssp ---------------------------CEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEEC
T ss_pred ---------------------------CEEECCCCcCcc-cCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEEC
Confidence 777777777773 5556667788888888888887 56667778888888888
Q ss_pred CCCcCcccCCccccCCCCCCEEECcCCcCccCCCCccccCccccccccCCCCCCCCC
Q 048006 718 SRNQLVGGIPSSLSQLSGLSVMDLSYNNLSGKIPTVTQLQSFNDTVYAGNPELCGLP 774 (833)
Q Consensus 718 s~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~l~~~~~~gn~~lc~~~ 774 (833)
++|+++.. | +..+++|+.|++++|++.+.... ..+..+....+.+++..|.++
T Consensus 326 ~~N~i~~~-~--~~~~~~L~~L~l~~N~~~~~~~~-~~~~~~~~~~~~~~~~~c~~~ 378 (390)
T 3o6n_A 326 DHNSIVTL-K--LSTHHTLKNLTLSHNDWDCNSLR-ALFRNVARPAVDDADQHCKID 378 (390)
T ss_dssp CSSCCCCC-C--CCTTCCCSEEECCSSCEEHHHHH-HHTTTCCTTTBCCCCSCCCTT
T ss_pred CCCcccee-C--chhhccCCEEEcCCCCccchhHH-HHHHHHHhhcccccCceeccc
Confidence 88888754 3 66778899999999999875432 334455556677787777643
No 38
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=4.8e-33 Score=320.90 Aligned_cols=333 Identities=20% Similarity=0.198 Sum_probs=227.0
Q ss_pred CccEEEcccccccccChhhhcCCCCCCEEECcCCccccccCCCccCCccccEEEccCccCCCCCChhhcccccccEEeec
Q 048006 318 SLKSLYLENSLTGVISESFFSNISNLKELHLANNPLVLKLSHDWVPPFQLIIISLSSCKIGPHFPKWLQTQNQIELLDIS 397 (833)
Q Consensus 318 ~L~~L~L~~~~~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls 397 (833)
+++.+++.++.++.+|+..|..+++|++|++++|.+.+..+..|..+++|++|++++|.+++..|..+..+++|++|+|+
T Consensus 52 ~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 131 (597)
T 3oja_B 52 NQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLE 131 (597)
T ss_dssp CCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEee
Confidence 34444444444455555556666667777777766666555556566666666666666665666666666666666666
Q ss_pred CCccccccchhHHhhcccccEEEcccccccccCCccccccCCCCCceecccCcccccCCCCCCCCceeecCCCccccccc
Q 048006 398 NTGISDTIPDWFWNLSNKFSFLDLASNQIKGKLPNLSSRFGTSNPGIDISSNHFEGLIPPLPSNSSFLNLSKNRFSGSIS 477 (833)
Q Consensus 398 ~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~ 477 (833)
+|.+++..+..|..
T Consensus 132 ~n~l~~l~~~~~~~------------------------------------------------------------------ 145 (597)
T 3oja_B 132 RNDLSSLPRGIFHN------------------------------------------------------------------ 145 (597)
T ss_dssp SSCCCCCCTTTTTT------------------------------------------------------------------
T ss_pred CCCCCCCCHHHhcc------------------------------------------------------------------
Confidence 66665332222211
Q ss_pred ccccccCCcccEEEcCCCcCcCCCCCcccCCCCCcEEEccCCcccccCCCCccCcCCccEEEcccCcCccccCccccCCC
Q 048006 478 FLCSISGSKLTYVDLSSNLLSGKLPDCWWTFDSLVILNLENNSFSGRIPDSMGFLQNIQTLSLHNNRLTGELSSSFRNCS 557 (833)
Q Consensus 478 ~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 557 (833)
+++|++|++++|.+++..|..|..+++|++|++++|.+++. .+..+++|+.|++++|.+++. ...+
T Consensus 146 ------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~---~~~~l~~L~~L~l~~n~l~~l-----~~~~ 211 (597)
T 3oja_B 146 ------TPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLSTL-----AIPI 211 (597)
T ss_dssp ------CTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC---CGGGCTTCSEEECCSSCCSEE-----ECCT
T ss_pred ------CCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc---ChhhhhhhhhhhcccCccccc-----cCCc
Confidence 25566666666666666666666677777777777776643 245566777777777766642 3345
Q ss_pred CCcEeccCCCccCCCCCcchhhcCCccceEEecCCcccccccccccCCCCCCEEeccCCcCcccCCccccccccccccCC
Q 048006 558 QLRLLDLGKNALYGEIPTWMGESLSNLIVLSLKSNKFHGKIPFQLCQLAFLQVLDLSLNNISGKIPKCFNNFTAMTQERS 637 (833)
Q Consensus 558 ~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~ 637 (833)
+|+.|++++|.+. .+|... .++|+.|++++|.+++ +..+..+++|+.|+|++|.+.+..|..|..+++|
T Consensus 212 ~L~~L~ls~n~l~-~~~~~~---~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L----- 280 (597)
T 3oja_B 212 AVEELDASHNSIN-VVRGPV---NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRL----- 280 (597)
T ss_dssp TCSEEECCSSCCC-EEECSC---CSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSC-----
T ss_pred hhheeeccCCccc-cccccc---CCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcCccCC-----
Confidence 6777777777776 444432 3577888888887775 3567778888888888888887777777766665
Q ss_pred CCcccccceEEeeccCcchhccccCcccEEEccCCcCCCCCchhhhcccCCcEEECCCccccccCCcccCCCCCCCEEeC
Q 048006 638 SDPTIKDKLMLTWKGSEREYRSTLGLVKSLELSNNNLNGAVPEEIMDLVGLVALNLSKNHLTGQISPKIGQLKSLDFLDL 717 (833)
Q Consensus 638 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L 717 (833)
+.|+|++|.+++ +|..+..+++|++|+|++|.++ .+|..+..+++|+.|+|
T Consensus 281 ---------------------------~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L 331 (597)
T 3oja_B 281 ---------------------------ERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYL 331 (597)
T ss_dssp ---------------------------CEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEEC
T ss_pred ---------------------------CEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEEC
Confidence 788888888874 5666777888999999999888 67777888899999999
Q ss_pred CCCcCcccCCccccCCCCCCEEECcCCcCccCCCCccccCccccccccCCCCCCCCC
Q 048006 718 SRNQLVGGIPSSLSQLSGLSVMDLSYNNLSGKIPTVTQLQSFNDTVYAGNPELCGLP 774 (833)
Q Consensus 718 s~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~l~~~~~~gn~~lc~~~ 774 (833)
++|++++. | +..+++|+.|++++|+++|..+. ..+..+....+.+++..|+.+
T Consensus 332 ~~N~l~~~-~--~~~~~~L~~L~l~~N~~~~~~~~-~~~~~~~~~~~~~~~~~C~~~ 384 (597)
T 3oja_B 332 DHNSIVTL-K--LSTHHTLKNLTLSHNDWDCNSLR-ALFRNVARPAVDDADQHCKID 384 (597)
T ss_dssp CSSCCCCC-C--CCTTCCCSEEECCSSCEEHHHHH-HHTTTCCTTTBCCCCCCCCTT
T ss_pred CCCCCCCc-C--hhhcCCCCEEEeeCCCCCChhHH-HHHHHHhhhccccccccCCcc
Confidence 99998855 2 66778999999999999987543 345566666788899999764
No 39
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=100.00 E-value=2.3e-33 Score=297.51 Aligned_cols=275 Identities=16% Similarity=0.209 Sum_probs=194.1
Q ss_pred CCCCCCHHHHHHHHHhhhcCc-CCCCCCCCCCC-CCCCCCCCcccceEecC--------CCCcEEEEECCCCCCCCCCcc
Q 048006 7 NIIRCIDEEREALLTFKASLV-DESGVLSSWGP-EDEKRDCCKWTGLRCSN--------KTNHVILLDLQPIDFDSFPLR 76 (833)
Q Consensus 7 ~~~~~~~~~~~~ll~~k~~~~-~~~~~~~~w~~-~~~~~~~c~w~gv~c~~--------~~~~v~~l~L~~~~~~~~~l~ 76 (833)
....+..+|+.||++||+++. |+.+.+.+|.. .....++|.|.|+.|.. ..++|+.|+|++ +.++
T Consensus 20 ~~~~~~~~~~~aLl~~k~~~~~~~~~~~~~w~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~-----n~l~ 94 (328)
T 4fcg_A 20 QGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRS-----VPLP 94 (328)
T ss_dssp C--CCCCCHHHHHHHHHHHHHHCCTTHHHHHHHHTTTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEES-----SCCS
T ss_pred eccccCchHHHHHHHHHHhccCCchhhhhhhcccccccccccccCCcchhhhHHHHhcccccceeEEEccC-----CCch
Confidence 344567789999999999984 77677788931 01467899999999952 347899999998 5665
Q ss_pred eecCccccCCCCCCEEeCCCCCCCCCCccccccCCCCCCEEEccCCCCCCCCCcccCCccccceecccCccCCCCCCccc
Q 048006 77 GTISPALLKLHDLRHLNLSFNDFSGSPIPEFIGSLSKLRYLDLFGTVFAGPIPPQLGNLSRLQHLDLGSNYLFSTGNLDW 156 (833)
Q Consensus 77 ~~~~~~l~~l~~L~~L~Ls~n~~~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~~~~~~~~~~ 156 (833)
.+|+.++++++|++|+|++|.++ .+|..++.+++|++|+|++|.+. .+|..++++++|++|++++|.+.. ..+..
T Consensus 95 -~lp~~l~~l~~L~~L~L~~n~l~--~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~-~~p~~ 169 (328)
T 4fcg_A 95 -QFPDQAFRLSHLQHMTIDAAGLM--ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELT-ELPEP 169 (328)
T ss_dssp -SCCSCGGGGTTCSEEEEESSCCC--CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCC-CCCSC
T ss_pred -hcChhhhhCCCCCEEECCCCCcc--chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCcc-ccChh
Confidence 77888899999999999999998 48888999999999999999998 789899999999999999987654 23333
Q ss_pred c---------cCCCCCcEEecCCCCCCCCchhHHhhcCCCCCCEEEccCCCCCCCCCccccccccCCCCCEEEccCCcCC
Q 048006 157 L---------SHLSYLRYLNLDESNLANSSDWFQVIGKLHSLKTLSLHSCYLPPVIPLSLNHLNSSTSLETLVLSDNNLT 227 (833)
Q Consensus 157 l---------~~l~~L~~L~Ls~n~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~ 227 (833)
+ .++++|++|++++|.++. +|..++++++|++|++++|.+.+. |. .+.. +++|++|++++|.+.
T Consensus 170 ~~~~~~~~~~~~l~~L~~L~L~~n~l~~---lp~~l~~l~~L~~L~L~~N~l~~l-~~--~l~~-l~~L~~L~Ls~n~~~ 242 (328)
T 4fcg_A 170 LASTDASGEHQGLVNLQSLRLEWTGIRS---LPASIANLQNLKSLKIRNSPLSAL-GP--AIHH-LPKLEELDLRGCTAL 242 (328)
T ss_dssp SEEEC-CCCEEESTTCCEEEEEEECCCC---CCGGGGGCTTCCEEEEESSCCCCC-CG--GGGG-CTTCCEEECTTCTTC
T ss_pred HhhccchhhhccCCCCCEEECcCCCcCc---chHhhcCCCCCCEEEccCCCCCcC-ch--hhcc-CCCCCEEECcCCcch
Confidence 3 346777777777776664 345566666677777766666643 32 2222 266666666666666
Q ss_pred CCCCCcccccccCCcEEEccCccccccccccccCCCCCcEEECcCCcccccccccccCCCCCcEEEccCCCC
Q 048006 228 SSIYPWLPNISSIFISIDLGFNQLQGSIPESFQHMVYLEHLRLSFNELEGGIPKFFGNMCSLITLNLSNNKL 299 (833)
Q Consensus 228 ~~~~~~l~~l~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l 299 (833)
+.+|..+..+++ |++|++++|.+.+.+|..+..+++|++|++++|.+.+.+|..++++++|+.+++..+.+
T Consensus 243 ~~~p~~~~~l~~-L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~ 313 (328)
T 4fcg_A 243 RNYPPIFGGRAP-LKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQ 313 (328)
T ss_dssp CBCCCCTTCCCC-CCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGS
T ss_pred hhhHHHhcCCCC-CCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHH
Confidence 666666666665 66666666666666666666666666666666666666666666666666666655543
No 40
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=7.3e-32 Score=294.76 Aligned_cols=307 Identities=21% Similarity=0.176 Sum_probs=188.0
Q ss_pred CcEEEccCccccccccccccCCCCCcEEECcCCcccccccccccCCCCCcEEEccCCCCCchhhHHHhhcCCccccCCcc
Q 048006 241 FISIDLGFNQLQGSIPESFQHMVYLEHLRLSFNELEGGIPKFFGNMCSLITLNLSNNKLSGQLSEIIQNLSSGCLENSLK 320 (833)
Q Consensus 241 L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~~~~~~L~ 320 (833)
++.|++++|.++...+..|..+++|++|++++|.+++..+..|..+++|++|++++|.+++..|..++.++ +|+
T Consensus 47 l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~------~L~ 120 (390)
T 3o6n_A 47 QKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVP------LLT 120 (390)
T ss_dssp CSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT------TCC
T ss_pred ceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCC------CCC
Confidence 34444444444433333344444555555555554444444444455555555555554444444444444 444
Q ss_pred EEEcccccccccChhhhcCCCCCCEEECcCCccccccCCCccCCccccEEEccCccCCCCCChhhcccccccEEeecCCc
Q 048006 321 SLYLENSLTGVISESFFSNISNLKELHLANNPLVLKLSHDWVPPFQLIIISLSSCKIGPHFPKWLQTQNQIELLDISNTG 400 (833)
Q Consensus 321 ~L~L~~~~~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~n~ 400 (833)
+|++++|.+..+|...|.++++|++|++++|.+....+..+..+++|++|++++|.+++. .+..+++|+.|++++|.
T Consensus 121 ~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~ 197 (390)
T 3o6n_A 121 VLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNL 197 (390)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSC
T ss_pred EEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeeccccc
Confidence 444444444444444455666666666666666554444455555555555555554432 13344555555555555
Q ss_pred cccccchhHHhhcccccEEEcccccccccCCccccccCCCCCceecccCcccccCCCCCCCCceeecCCCcccccccccc
Q 048006 401 ISDTIPDWFWNLSNKFSFLDLASNQIKGKLPNLSSRFGTSNPGIDISSNHFEGLIPPLPSNSSFLNLSKNRFSGSISFLC 480 (833)
Q Consensus 401 i~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~ 480 (833)
+++... ..+|++|++++|.+. .....
T Consensus 198 l~~~~~------~~~L~~L~l~~n~l~----------------------------------------------~~~~~-- 223 (390)
T 3o6n_A 198 LSTLAI------PIAVEELDASHNSIN----------------------------------------------VVRGP-- 223 (390)
T ss_dssp CSEEEC------CSSCSEEECCSSCCC----------------------------------------------EEECC--
T ss_pred ccccCC------CCcceEEECCCCeee----------------------------------------------ecccc--
Confidence 443211 113444444444333 11100
Q ss_pred cccCCcccEEEcCCCcCcCCCCCcccCCCCCcEEEccCCcccccCCCCccCcCCccEEEcccCcCccccCccccCCCCCc
Q 048006 481 SISGSKLTYVDLSSNLLSGKLPDCWWTFDSLVILNLENNSFSGRIPDSMGFLQNIQTLSLHNNRLTGELSSSFRNCSQLR 560 (833)
Q Consensus 481 ~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 560 (833)
..++|++|++++|.+++. ..+..+++|++|++++|.+++..|..+..+++|++|++++|++++ ++..+..+++|+
T Consensus 224 --~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~ 298 (390)
T 3o6n_A 224 --VNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLK 298 (390)
T ss_dssp --CCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCE-EECSSSCCTTCC
T ss_pred --ccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcc-cCcccCCCCCCC
Confidence 026788888888888754 467888899999999999988888888889999999999999885 455667888999
Q ss_pred EeccCCCccCCCCCcchhhcCCccceEEecCCcccccccccccCCCCCCEEeccCCcCcc
Q 048006 561 LLDLGKNALYGEIPTWMGESLSNLIVLSLKSNKFHGKIPFQLCQLAFLQVLDLSLNNISG 620 (833)
Q Consensus 561 ~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~ 620 (833)
+|++++|++. .+|..+. .+++|++|++++|+++.. + +..+++|+.|++++|++..
T Consensus 299 ~L~L~~n~l~-~~~~~~~-~l~~L~~L~L~~N~i~~~-~--~~~~~~L~~L~l~~N~~~~ 353 (390)
T 3o6n_A 299 VLDLSHNHLL-HVERNQP-QFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDC 353 (390)
T ss_dssp EEECCSSCCC-CCGGGHH-HHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEH
T ss_pred EEECCCCcce-ecCcccc-ccCcCCEEECCCCcccee-C--chhhccCCEEEcCCCCccc
Confidence 9999999987 7777766 588999999999998754 3 6778899999999999875
No 41
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=4.1e-31 Score=284.20 Aligned_cols=307 Identities=24% Similarity=0.335 Sum_probs=195.5
Q ss_pred ccCCCCCCEEeCCCCCCCCCCccccccCCCCCCEEEccCCCCCCCCCcccCCccccceecccCccCCCCCCcccccCCCC
Q 048006 83 LLKLHDLRHLNLSFNDFSGSPIPEFIGSLSKLRYLDLFGTVFAGPIPPQLGNLSRLQHLDLGSNYLFSTGNLDWLSHLSY 162 (833)
Q Consensus 83 l~~l~~L~~L~Ls~n~~~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~ 162 (833)
+..+++|++|+++++.+.. +| .+..+++|++|++++|.+.+ +|. +.++++|++|++++|.+.. ++.+.++++
T Consensus 40 ~~~l~~L~~L~l~~~~i~~--~~-~~~~~~~L~~L~l~~n~i~~-~~~-~~~l~~L~~L~L~~n~i~~---~~~~~~l~~ 111 (347)
T 4fmz_A 40 QEELESITKLVVAGEKVAS--IQ-GIEYLTNLEYLNLNGNQITD-ISP-LSNLVKLTNLYIGTNKITD---ISALQNLTN 111 (347)
T ss_dssp HHHHTTCSEEECCSSCCCC--CT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCC---CGGGTTCTT
T ss_pred chhcccccEEEEeCCcccc--ch-hhhhcCCccEEEccCCcccc-chh-hhcCCcCCEEEccCCcccC---chHHcCCCc
Confidence 4456677777777777763 33 36667777777777777764 333 7777777777777776643 345777777
Q ss_pred CcEEecCCCCCCCCchhHHhhcCCCCCCEEEccCCCCCCCCCccccccccCCCCCEEEccCCcCCCCCCCcccccccCCc
Q 048006 163 LRYLNLDESNLANSSDWFQVIGKLHSLKTLSLHSCYLPPVIPLSLNHLNSSTSLETLVLSDNNLTSSIYPWLPNISSIFI 242 (833)
Q Consensus 163 L~~L~Ls~n~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~~L~ 242 (833)
|++|++++|.+++.+ .+..+++|++|++++|.....++. ...+++|++|++++|.+.+..+ +..+++ |+
T Consensus 112 L~~L~l~~n~i~~~~----~~~~l~~L~~L~l~~n~~~~~~~~----~~~l~~L~~L~l~~~~~~~~~~--~~~l~~-L~ 180 (347)
T 4fmz_A 112 LRELYLNEDNISDIS----PLANLTKMYSLNLGANHNLSDLSP----LSNMTGLNYLTVTESKVKDVTP--IANLTD-LY 180 (347)
T ss_dssp CSEEECTTSCCCCCG----GGTTCTTCCEEECTTCTTCCCCGG----GTTCTTCCEEECCSSCCCCCGG--GGGCTT-CS
T ss_pred CCEEECcCCcccCch----hhccCCceeEEECCCCCCcccccc----hhhCCCCcEEEecCCCcCCchh--hccCCC-CC
Confidence 777777777776642 266777777777777754444332 2233677777777777665433 556666 77
Q ss_pred EEEccCccccccccccccCCCCCcEEECcCCcccccccccccCCCCCcEEEccCCCCCchhhHHHhhcCCccccCCccEE
Q 048006 243 SIDLGFNQLQGSIPESFQHMVYLEHLRLSFNELEGGIPKFFGNMCSLITLNLSNNKLSGQLSEIIQNLSSGCLENSLKSL 322 (833)
Q Consensus 243 ~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~~~~~~L~~L 322 (833)
+|++++|.+++..+ +..+++|++|++++|.+++..+ +..+++|++|++++|++++..+ +..++ +|++|
T Consensus 181 ~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~------~L~~L 248 (347)
T 4fmz_A 181 SLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLS------QLTWL 248 (347)
T ss_dssp EEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCT------TCCEE
T ss_pred EEEccCCccccccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hhcCC------CCCEE
Confidence 77777777765432 6677777777777777765433 6677777777777777766544 55555 66666
Q ss_pred EcccccccccChhhhcCCCCCCEEECcCCccccccCCCccCCccccEEEccCccCCCCCChhhcccccccEEeecCCccc
Q 048006 323 YLENSLTGVISESFFSNISNLKELHLANNPLVLKLSHDWVPPFQLIIISLSSCKIGPHFPKWLQTQNQIELLDISNTGIS 402 (833)
Q Consensus 323 ~L~~~~~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~n~i~ 402 (833)
++++|.+..++ .+..+++|++|++++|.+... ..+..+++|++|++++|.+++..+..+..+++|++|++++|+++
T Consensus 249 ~l~~n~l~~~~--~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 324 (347)
T 4fmz_A 249 EIGTNQISDIN--AVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHIT 324 (347)
T ss_dssp ECCSSCCCCCG--GGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCC
T ss_pred ECCCCccCCCh--hHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccc
Confidence 66655655553 366777777777777766653 23555666666666666666666666666666666666666666
Q ss_pred cccchhHHhhcccccEEEccccccc
Q 048006 403 DTIPDWFWNLSNKFSFLDLASNQIK 427 (833)
Q Consensus 403 ~~~~~~~~~~~~~L~~L~L~~n~l~ 427 (833)
+..| +.. .++|++|++++|.++
T Consensus 325 ~~~~--~~~-l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 325 DIRP--LAS-LSKMDSADFANQVIK 346 (347)
T ss_dssp CCGG--GGG-CTTCSEESSSCC---
T ss_pred cccC--hhh-hhccceeehhhhccc
Confidence 5554 222 235666666666553
No 42
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.98 E-value=5.7e-31 Score=283.04 Aligned_cols=215 Identities=23% Similarity=0.318 Sum_probs=136.4
Q ss_pred CcccEEEcCCCcCcCCCCCcccCCCCCcEEEccCCcccccCCCCccCcCCccEEEcccCcCccccCccccCCCCCcEecc
Q 048006 485 SKLTYVDLSSNLLSGKLPDCWWTFDSLVILNLENNSFSGRIPDSMGFLQNIQTLSLHNNRLTGELSSSFRNCSQLRLLDL 564 (833)
Q Consensus 485 ~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 564 (833)
++|++|++++|.....++ .+..+++|++|++++|.+.+..+ +..+++|++|++++|.+.+..+ +..+++|++|++
T Consensus 132 ~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l 206 (347)
T 4fmz_A 132 TKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTA 206 (347)
T ss_dssp TTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCCCGG--GGGCTTCCEEEC
T ss_pred CceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCccccccc--ccCCCccceeec
Confidence 445555555554332222 25556666666666666654332 5566666666666666664332 566667777777
Q ss_pred CCCccCCCCCcchhhcCCccceEEecCCcccccccccccCCCCCCEEeccCCcCcccCCccccccccccccCCCCccccc
Q 048006 565 GKNALYGEIPTWMGESLSNLIVLSLKSNKFHGKIPFQLCQLAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKD 644 (833)
Q Consensus 565 ~~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~ 644 (833)
++|.+.+ ++. +. .+++|++|++++|.+++..+ +..+++|++|++++|.+++. ..+..++
T Consensus 207 ~~n~l~~-~~~-~~-~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~~~~l~-------------- 265 (347)
T 4fmz_A 207 YVNQITD-ITP-VA-NMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI--NAVKDLT-------------- 265 (347)
T ss_dssp CSSCCCC-CGG-GG-GCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCT--------------
T ss_pred ccCCCCC-Cch-hh-cCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC--hhHhcCC--------------
Confidence 7776663 332 22 46677777777777764333 66777777777777777642 2333333
Q ss_pred ceEEeeccCcchhccccCcccEEEccCCcCCCCCchhhhcccCCcEEECCCccccccCCcccCCCCCCCEEeCCCCcCcc
Q 048006 645 KLMLTWKGSEREYRSTLGLVKSLELSNNNLNGAVPEEIMDLVGLVALNLSKNHLTGQISPKIGQLKSLDFLDLSRNQLVG 724 (833)
Q Consensus 645 ~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 724 (833)
+|+.|++++|++++. +.+..+++|++|++++|.+++..|..++.+++|+.|++++|++++
T Consensus 266 ------------------~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~ 325 (347)
T 4fmz_A 266 ------------------KLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITD 325 (347)
T ss_dssp ------------------TCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCC
T ss_pred ------------------CcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCcccc
Confidence 347777777777743 347777888888888888877777777888888888888888876
Q ss_pred cCCccccCCCCCCEEECcCCcCc
Q 048006 725 GIPSSLSQLSGLSVMDLSYNNLS 747 (833)
Q Consensus 725 ~~p~~l~~l~~L~~L~ls~N~l~ 747 (833)
..| +..+++|++|++++|+++
T Consensus 326 ~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 326 IRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp CGG--GGGCTTCSEESSSCC---
T ss_pred ccC--hhhhhccceeehhhhccc
Confidence 655 777788888888888764
No 43
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.97 E-value=3.6e-31 Score=305.21 Aligned_cols=310 Identities=22% Similarity=0.228 Sum_probs=190.6
Q ss_pred CCCCEEEccCCcCCCCCCCcccccccCCcEEEccCccccccccccccCCCCCcEEECcCCcccccccccccCCCCCcEEE
Q 048006 214 TSLETLVLSDNNLTSSIYPWLPNISSIFISIDLGFNQLQGSIPESFQHMVYLEHLRLSFNELEGGIPKFFGNMCSLITLN 293 (833)
Q Consensus 214 ~~L~~L~Ls~n~l~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 293 (833)
.+++.+++++|.+....+..+..+++ |++|++++|.+++..|..|+.+++|++|+|++|.+++..|..|+++++|++|+
T Consensus 51 ~~l~~l~l~~~~l~~lp~~~~~~l~~-L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 129 (597)
T 3oja_B 51 NNQKIVTFKNSTMRKLPAALLDSFRQ-VELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 129 (597)
T ss_dssp CCCSEEEESSCEESEECTHHHHHCCC-CSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCceEEEeeCCCCCCcCHHHHccCCC-CcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEE
Confidence 55566666655555433333444444 55555555555544444555555555555555555554444455555555555
Q ss_pred ccCCCCCchhhHHHhhcCCccccCCccEEEcccccccccChhhhcCCCCCCEEECcCCccccccCCCccCCccccEEEcc
Q 048006 294 LSNNKLSGQLSEIIQNLSSGCLENSLKSLYLENSLTGVISESFFSNISNLKELHLANNPLVLKLSHDWVPPFQLIIISLS 373 (833)
Q Consensus 294 Ls~n~l~~~~~~~l~~l~~~~~~~~L~~L~L~~~~~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~ 373 (833)
|++|.++ .+|+..|.++++|++|++++|.+.+..+..|..+++|++|+++
T Consensus 130 L~~n~l~------------------------------~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~ 179 (597)
T 3oja_B 130 LERNDLS------------------------------SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLS 179 (597)
T ss_dssp CCSSCCC------------------------------CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECT
T ss_pred eeCCCCC------------------------------CCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECc
Confidence 5555444 3343345555566666666665555444444444444444444
Q ss_pred CccCCCCCChhhcccccccEEeecCCccccccchhHHhhcccccEEEcccccccccCCccccccCCCCCceecccCcccc
Q 048006 374 SCKIGPHFPKWLQTQNQIELLDISNTGISDTIPDWFWNLSNKFSFLDLASNQIKGKLPNLSSRFGTSNPGIDISSNHFEG 453 (833)
Q Consensus 374 ~~~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~~l~~l~l~~n~l~~ 453 (833)
+|.+++.. +..+++|+.|++++|.+++... ...|+.|++++|.+. .
T Consensus 180 ~N~l~~~~---~~~l~~L~~L~l~~n~l~~l~~------~~~L~~L~ls~n~l~-------------------------~ 225 (597)
T 3oja_B 180 SNRLTHVD---LSLIPSLFHANVSYNLLSTLAI------PIAVEELDASHNSIN-------------------------V 225 (597)
T ss_dssp TSCCSBCC---GGGCTTCSEEECCSSCCSEEEC------CTTCSEEECCSSCCC-------------------------E
T ss_pred CCCCCCcC---hhhhhhhhhhhcccCccccccC------CchhheeeccCCccc-------------------------c
Confidence 44444321 3334455555555554443211 113444444444332 1
Q ss_pred cCCCCCCCCceeecCCCcccccccccccccCCcccEEEcCCCcCcCCCCCcccCCCCCcEEEccCCcccccCCCCccCcC
Q 048006 454 LIPPLPSNSSFLNLSKNRFSGSISFLCSISGSKLTYVDLSSNLLSGKLPDCWWTFDSLVILNLENNSFSGRIPDSMGFLQ 533 (833)
Q Consensus 454 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 533 (833)
..+.. .++|+.|++++|.+++ +..+..+++|+.|++++|.+++..|..|..++
T Consensus 226 ~~~~~-------------------------~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 278 (597)
T 3oja_B 226 VRGPV-------------------------NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQ 278 (597)
T ss_dssp EECSC-------------------------CSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTCS
T ss_pred ccccc-------------------------CCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcCcc
Confidence 11111 2567788888888775 35678888888888888888888888888888
Q ss_pred CccEEEcccCcCccccCccccCCCCCcEeccCCCccCCCCCcchhhcCCccceEEecCCcccccccccccCCCCCCEEec
Q 048006 534 NIQTLSLHNNRLTGELSSSFRNCSQLRLLDLGKNALYGEIPTWMGESLSNLIVLSLKSNKFHGKIPFQLCQLAFLQVLDL 613 (833)
Q Consensus 534 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L 613 (833)
+|++|+|++|.+++ +|..+..+++|++|++++|.+. .+|..+. .+++|++|+|++|.+++. .+..+++|+.|++
T Consensus 279 ~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~-~l~~L~~L~L~~N~l~~~---~~~~~~~L~~L~l 352 (597)
T 3oja_B 279 RLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQP-QFDRLENLYLDHNSIVTL---KLSTHHTLKNLTL 352 (597)
T ss_dssp SCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHH-HHTTCSEEECCSSCCCCC---CCCTTCCCSEEEC
T ss_pred CCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccc-cCCCCCEEECCCCCCCCc---ChhhcCCCCEEEe
Confidence 89999999998886 4566677889999999999988 7887776 588999999999988754 2667788999999
Q ss_pred cCCcCccc
Q 048006 614 SLNNISGK 621 (833)
Q Consensus 614 s~N~l~~~ 621 (833)
++|++.+.
T Consensus 353 ~~N~~~~~ 360 (597)
T 3oja_B 353 SHNDWDCN 360 (597)
T ss_dssp CSSCEEHH
T ss_pred eCCCCCCh
Confidence 99988754
No 44
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.97 E-value=3.9e-30 Score=274.29 Aligned_cols=220 Identities=22% Similarity=0.241 Sum_probs=170.7
Q ss_pred CcccEEEcCCCcCcCCCCCcccCCCCCcEEEccCCcccccCCCCccCcCCccEEEcccCcCc--cccCccccCCCCCcEe
Q 048006 485 SKLTYVDLSSNLLSGKLPDCWWTFDSLVILNLENNSFSGRIPDSMGFLQNIQTLSLHNNRLT--GELSSSFRNCSQLRLL 562 (833)
Q Consensus 485 ~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~--~~~~~~~~~l~~L~~L 562 (833)
++|++|++++|.++ .+|..+. ++|++|++++|.+++..+..|..+++|++|++++|.++ +..+..+..+ +|++|
T Consensus 102 ~~L~~L~L~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L 177 (332)
T 2ft3_A 102 RKLQKLYISKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYL 177 (332)
T ss_dssp TTCCEEECCSSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCC
T ss_pred CCCCEEECCCCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEE
Confidence 55666666666665 3333332 56777777777777655556777777777777777775 3566777777 88888
Q ss_pred ccCCCccCCCCCcchhhcCCccceEEecCCcccccccccccCCCCCCEEeccCCcCcccCCccccccccccccCCCCccc
Q 048006 563 DLGKNALYGEIPTWMGESLSNLIVLSLKSNKFHGKIPFQLCQLAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTI 642 (833)
Q Consensus 563 ~L~~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~ 642 (833)
++++|+++ .+|..+. ++|++|++++|.+++..+..+..+++|+.|++++|++.+..+..+..+++|
T Consensus 178 ~l~~n~l~-~l~~~~~---~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L---------- 243 (332)
T 2ft3_A 178 RISEAKLT-GIPKDLP---ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTL---------- 243 (332)
T ss_dssp BCCSSBCS-SCCSSSC---SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTC----------
T ss_pred ECcCCCCC-ccCcccc---CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCC----------
Confidence 88888887 5776543 688899999999988777888999999999999999988777777766665
Q ss_pred ccceEEeeccCcchhccccCcccEEEccCCcCCCCCchhhhcccCCcEEECCCccccccCCcccCCC------CCCCEEe
Q 048006 643 KDKLMLTWKGSEREYRSTLGLVKSLELSNNNLNGAVPEEIMDLVGLVALNLSKNHLTGQISPKIGQL------KSLDFLD 716 (833)
Q Consensus 643 ~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l------~~L~~L~ 716 (833)
+.|++++|+++ .+|..+..+++|++|++++|++++..+..|... ..|+.|+
T Consensus 244 ----------------------~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~ 300 (332)
T 2ft3_A 244 ----------------------RELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGIS 300 (332)
T ss_dssp ----------------------CEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEE
T ss_pred ----------------------CEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceE
Confidence 89999999998 788889999999999999999997777777653 6789999
Q ss_pred CCCCcCc--ccCCccccCCCCCCEEECcCCc
Q 048006 717 LSRNQLV--GGIPSSLSQLSGLSVMDLSYNN 745 (833)
Q Consensus 717 Ls~N~l~--~~~p~~l~~l~~L~~L~ls~N~ 745 (833)
+++|++. +..|..|..+++|+.+++++|+
T Consensus 301 l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 301 LFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp CCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred eecCcccccccCcccccccchhhhhhccccc
Confidence 9999987 6778889999999999999885
No 45
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.97 E-value=4.6e-33 Score=312.07 Aligned_cols=125 Identities=18% Similarity=0.153 Sum_probs=66.7
Q ss_pred CcEEEccCcccccccccc-ccCCCCCcEEECcCCcccc----cccccccCCCCCcEEEccCCCCCchhhHHHhh-cCCcc
Q 048006 241 FISIDLGFNQLQGSIPES-FQHMVYLEHLRLSFNELEG----GIPKFFGNMCSLITLNLSNNKLSGQLSEIIQN-LSSGC 314 (833)
Q Consensus 241 L~~L~Ls~n~l~~~~p~~-~~~l~~L~~L~L~~n~l~~----~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~-l~~~~ 314 (833)
+++|++++|+++...... +..+++|++|++++|++++ .++..+..+++|++|++++|.+++..+..+.. ++
T Consensus 5 l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~--- 81 (461)
T 1z7x_W 5 IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQ--- 81 (461)
T ss_dssp EEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTC---
T ss_pred ceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHh---
Confidence 566666666665433222 4555666666666666553 23444555566666666666555433322221 11
Q ss_pred ccCCccEEEcccccccccChhhhcCCCCCCEEECcCCccccccCCCccCCccccEEEccCccCCCCCChhhcccccccEE
Q 048006 315 LENSLKSLYLENSLTGVISESFFSNISNLKELHLANNPLVLKLSHDWVPPFQLIIISLSSCKIGPHFPKWLQTQNQIELL 394 (833)
Q Consensus 315 ~~~~L~~L~L~~~~~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L 394 (833)
...++|++|++++|.+..... ..++..+..+++|++|
T Consensus 82 -----------------------~~~~~L~~L~L~~n~i~~~~~--------------------~~l~~~l~~~~~L~~L 118 (461)
T 1z7x_W 82 -----------------------TPSCKIQKLSLQNCCLTGAGC--------------------GVLSSTLRTLPTLQEL 118 (461)
T ss_dssp -----------------------STTCCCCEEECTTSCCBGGGH--------------------HHHHHHTTSCTTCCEE
T ss_pred -----------------------hCCCceeEEEccCCCCCHHHH--------------------HHHHHHHccCCceeEE
Confidence 011146666666665542110 1345667777888888
Q ss_pred eecCCccccccchhHHh
Q 048006 395 DISNTGISDTIPDWFWN 411 (833)
Q Consensus 395 ~Ls~n~i~~~~~~~~~~ 411 (833)
++++|.+++..+..+..
T Consensus 119 ~Ls~n~i~~~~~~~l~~ 135 (461)
T 1z7x_W 119 HLSDNLLGDAGLQLLCE 135 (461)
T ss_dssp ECCSSBCHHHHHHHHHH
T ss_pred ECCCCcCchHHHHHHHH
Confidence 88888877655555443
No 46
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=1.5e-29 Score=269.67 Aligned_cols=221 Identities=24% Similarity=0.242 Sum_probs=157.2
Q ss_pred CcccEEEcCCCcCcCCCCCcccCCCCCcEEEccCCcccccCCCCccCcCCccEEEcccCcCc--cccCccccCCCCCcEe
Q 048006 485 SKLTYVDLSSNLLSGKLPDCWWTFDSLVILNLENNSFSGRIPDSMGFLQNIQTLSLHNNRLT--GELSSSFRNCSQLRLL 562 (833)
Q Consensus 485 ~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~--~~~~~~~~~l~~L~~L 562 (833)
++|++|++++|.++ .+|..+. ++|++|++++|.+++..+..+..+++|++|++++|.+. +..+..+..+++|++|
T Consensus 100 ~~L~~L~Ls~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L 176 (330)
T 1xku_A 100 VKLERLYLSKNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYI 176 (330)
T ss_dssp TTCCEEECCSSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEE
T ss_pred CCCCEEECCCCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEE
Confidence 44555555555554 2333222 46666666666666555555666667777777777664 3556677777788888
Q ss_pred ccCCCccCCCCCcchhhcCCccceEEecCCcccccccccccCCCCCCEEeccCCcCcccCCccccccccccccCCCCccc
Q 048006 563 DLGKNALYGEIPTWMGESLSNLIVLSLKSNKFHGKIPFQLCQLAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTI 642 (833)
Q Consensus 563 ~L~~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~ 642 (833)
++++|.+. .+|..+. ++|++|++++|++++..|..+..+++|+.|++++|++++..+..+..+++|
T Consensus 177 ~l~~n~l~-~l~~~~~---~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L---------- 242 (330)
T 1xku_A 177 RIADTNIT-TIPQGLP---PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHL---------- 242 (330)
T ss_dssp ECCSSCCC-SCCSSCC---TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTC----------
T ss_pred ECCCCccc-cCCcccc---ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCC----------
Confidence 88888776 5666543 678888888888887777888888888888888888887666666665555
Q ss_pred ccceEEeeccCcchhccccCcccEEEccCCcCCCCCchhhhcccCCcEEECCCccccccCCcccCC------CCCCCEEe
Q 048006 643 KDKLMLTWKGSEREYRSTLGLVKSLELSNNNLNGAVPEEIMDLVGLVALNLSKNHLTGQISPKIGQ------LKSLDFLD 716 (833)
Q Consensus 643 ~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~------l~~L~~L~ 716 (833)
+.|++++|+++ .+|..+..+++|++|++++|++++..+..|.. .+.|+.|+
T Consensus 243 ----------------------~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~ 299 (330)
T 1xku_A 243 ----------------------RELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVS 299 (330)
T ss_dssp ----------------------CEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEE
T ss_pred ----------------------CEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceE
Confidence 88888888888 77878888888888888888888776666643 36788888
Q ss_pred CCCCcCcc--cCCccccCCCCCCEEECcCCc
Q 048006 717 LSRNQLVG--GIPSSLSQLSGLSVMDLSYNN 745 (833)
Q Consensus 717 Ls~N~l~~--~~p~~l~~l~~L~~L~ls~N~ 745 (833)
+++|++.. ..|..|..+..++.+++++|+
T Consensus 300 l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 300 LFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp CCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred eecCcccccccCccccccccceeEEEecccC
Confidence 88888763 566778888888888888874
No 47
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.97 E-value=4.2e-33 Score=312.38 Aligned_cols=86 Identities=19% Similarity=0.169 Sum_probs=46.2
Q ss_pred CcccEEEcCCCcCcCC----CCCcccCCCCCcEEEccCCcccccCCCCccC-----cCCccEEEcccCcCcc----ccCc
Q 048006 485 SKLTYVDLSSNLLSGK----LPDCWWTFDSLVILNLENNSFSGRIPDSMGF-----LQNIQTLSLHNNRLTG----ELSS 551 (833)
Q Consensus 485 ~~L~~L~ls~n~l~~~----~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~-----l~~L~~L~L~~n~l~~----~~~~ 551 (833)
++|++|++++|.+++. ++..+..+++|++|++++|.+++..+..+.. .++|++|++++|++++ .++.
T Consensus 313 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~ 392 (461)
T 1z7x_W 313 CQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAA 392 (461)
T ss_dssp CCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHH
T ss_pred ccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHH
Confidence 3555555555555543 2334445566666666666665443322221 3456666666666654 4455
Q ss_pred cccCCCCCcEeccCCCccC
Q 048006 552 SFRNCSQLRLLDLGKNALY 570 (833)
Q Consensus 552 ~~~~l~~L~~L~L~~n~l~ 570 (833)
.+..+++|++|++++|+++
T Consensus 393 ~l~~~~~L~~L~l~~N~i~ 411 (461)
T 1z7x_W 393 TLLANHSLRELDLSNNCLG 411 (461)
T ss_dssp HHHHCCCCCEEECCSSSCC
T ss_pred HHHhCCCccEEECCCCCCC
Confidence 5555566666666666554
No 48
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.97 E-value=2.2e-29 Score=268.46 Aligned_cols=270 Identities=19% Similarity=0.170 Sum_probs=136.1
Q ss_pred CCCCEEeCCCCCCCCCCccccccCCCCCCEEEccCCCCCCCCCcccCCccccceecccCccCCCCCCcccccCCCCCcEE
Q 048006 87 HDLRHLNLSFNDFSGSPIPEFIGSLSKLRYLDLFGTVFAGPIPPQLGNLSRLQHLDLGSNYLFSTGNLDWLSHLSYLRYL 166 (833)
Q Consensus 87 ~~L~~L~Ls~n~~~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L 166 (833)
++|++|++++|.+++. .|..|..+++|++|+|++|.+.+..|..|+++++|++|++++|.+.. .+..+. ++|++|
T Consensus 54 ~~l~~L~l~~n~i~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~--l~~~~~--~~L~~L 128 (332)
T 2ft3_A 54 PDTTLLDLQNNDISEL-RKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVE--IPPNLP--SSLVEL 128 (332)
T ss_dssp TTCCEEECCSSCCCEE-CTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCS--CCSSCC--TTCCEE
T ss_pred CCCeEEECCCCcCCcc-CHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCc--cCcccc--ccCCEE
Confidence 4555566666655542 34455555666666666665555555555555666666665555542 111111 455555
Q ss_pred ecCCCCCCCCchhHHhhcCCCCCCEEEccCCCCCCCCCccccccccCCCCCEEEccCCcCCCCCCCcccccccCCcEEEc
Q 048006 167 NLDESNLANSSDWFQVIGKLHSLKTLSLHSCYLPPVIPLSLNHLNSSTSLETLVLSDNNLTSSIYPWLPNISSIFISIDL 246 (833)
Q Consensus 167 ~Ls~n~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~~L~~L~L 246 (833)
++++|.++.++ +..++.+++|++|++++|.+.. .+..+..+..+ + |++|++
T Consensus 129 ~l~~n~i~~~~--~~~~~~l~~L~~L~l~~n~l~~-------------------------~~~~~~~~~~l-~-L~~L~l 179 (332)
T 2ft3_A 129 RIHDNRIRKVP--KGVFSGLRNMNCIEMGGNPLEN-------------------------SGFEPGAFDGL-K-LNYLRI 179 (332)
T ss_dssp ECCSSCCCCCC--SGGGSSCSSCCEEECCSCCCBG-------------------------GGSCTTSSCSC-C-CSCCBC
T ss_pred ECCCCccCccC--HhHhCCCccCCEEECCCCcccc-------------------------CCCCcccccCC-c-cCEEEC
Confidence 55555555431 1234555555555555555432 01233333333 2 444444
Q ss_pred cCccccccccccccCCCCCcEEECcCCcccccccccccCCCCCcEEEccCCCCCchhhHHHhhcCCccccCCccEEEccc
Q 048006 247 GFNQLQGSIPESFQHMVYLEHLRLSFNELEGGIPKFFGNMCSLITLNLSNNKLSGQLSEIIQNLSSGCLENSLKSLYLEN 326 (833)
Q Consensus 247 s~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~~~~~~L~~L~L~~ 326 (833)
++|.+++ +|..+. ++|++|++++|++++..+..|..+++|++|++++|++++..+..+..++ +|+.|++++
T Consensus 180 ~~n~l~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~------~L~~L~L~~ 250 (332)
T 2ft3_A 180 SEAKLTG-IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLP------TLRELHLDN 250 (332)
T ss_dssp CSSBCSS-CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCT------TCCEEECCS
T ss_pred cCCCCCc-cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCC------CCCEEECCC
Confidence 4444443 222222 3455555555555544444455555555555555555544444444444 455555544
Q ss_pred ccccccChhhhcCCCCCCEEECcCCccccccCCCccC------CccccEEEccCccCC--CCCChhhcccccccEEeecC
Q 048006 327 SLTGVISESFFSNISNLKELHLANNPLVLKLSHDWVP------PFQLIIISLSSCKIG--PHFPKWLQTQNQIELLDISN 398 (833)
Q Consensus 327 ~~~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~------~~~L~~L~L~~~~l~--~~~~~~l~~l~~L~~L~Ls~ 398 (833)
|.+..+|. .+..+++|++|++++|+++...+..|.+ ...|+.|++++|.+. ...|.++..+++|+.+++++
T Consensus 251 N~l~~lp~-~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~ 329 (332)
T 2ft3_A 251 NKLSRVPA-GLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGN 329 (332)
T ss_dssp SCCCBCCT-TGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC--
T ss_pred CcCeecCh-hhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccc
Confidence 44445554 3566667777777777666655554433 234566666666554 45556666666666666666
Q ss_pred Cc
Q 048006 399 TG 400 (833)
Q Consensus 399 n~ 400 (833)
|+
T Consensus 330 n~ 331 (332)
T 2ft3_A 330 YK 331 (332)
T ss_dssp --
T ss_pred cc
Confidence 53
No 49
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.96 E-value=8e-29 Score=264.00 Aligned_cols=287 Identities=21% Similarity=0.221 Sum_probs=196.8
Q ss_pred EEEEECCCCCCCCCCcceecCccccCCCCCCEEeCCCCCCCCCCccccccCCCCCCEEEccCCCCCCCCCcccCCccccc
Q 048006 60 VILLDLQPIDFDSFPLRGTISPALLKLHDLRHLNLSFNDFSGSPIPEFIGSLSKLRYLDLFGTVFAGPIPPQLGNLSRLQ 139 (833)
Q Consensus 60 v~~l~L~~~~~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~ 139 (833)
++.+++++ ..++ .+|..+. +++++|++++|.+++. .+..|+.+++|++|+|++|.+.+..|..|.++++|+
T Consensus 33 l~~l~~~~-----~~l~-~lp~~~~--~~l~~L~L~~n~i~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 103 (330)
T 1xku_A 33 LRVVQCSD-----LGLE-KVPKDLP--PDTALLDLQNNKITEI-KDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLE 103 (330)
T ss_dssp TTEEECTT-----SCCC-SCCCSCC--TTCCEEECCSSCCCCB-CTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCC
T ss_pred CeEEEecC-----CCcc-ccCccCC--CCCeEEECCCCcCCEe-ChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCC
Confidence 34677777 3443 3454443 6899999999999974 556899999999999999999988899999999999
Q ss_pred eecccCccCCCCCCcccccCCCCCcEEecCCCCCCCCchhHHhhcCCCCCCEEEccCCCCCC--CCCccccccccCCCCC
Q 048006 140 HLDLGSNYLFSTGNLDWLSHLSYLRYLNLDESNLANSSDWFQVIGKLHSLKTLSLHSCYLPP--VIPLSLNHLNSSTSLE 217 (833)
Q Consensus 140 ~L~Ls~n~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~--~~~~~~~~~~~~~~L~ 217 (833)
+|++++|.+.. .+..+. ++|++|++++|.+++. .+..+.++++|++|++++|.+.. ..+. .+ ..+++|+
T Consensus 104 ~L~Ls~n~l~~--l~~~~~--~~L~~L~l~~n~l~~~--~~~~~~~l~~L~~L~l~~n~l~~~~~~~~--~~-~~l~~L~ 174 (330)
T 1xku_A 104 RLYLSKNQLKE--LPEKMP--KTLQELRVHENEITKV--RKSVFNGLNQMIVVELGTNPLKSSGIENG--AF-QGMKKLS 174 (330)
T ss_dssp EEECCSSCCSB--CCSSCC--TTCCEEECCSSCCCBB--CHHHHTTCTTCCEEECCSSCCCGGGBCTT--GG-GGCTTCC
T ss_pred EEECCCCcCCc--cChhhc--ccccEEECCCCccccc--CHhHhcCCccccEEECCCCcCCccCcChh--hc-cCCCCcC
Confidence 99999999864 222222 7899999999999875 34668899999999999998854 3333 22 3348888
Q ss_pred EEEccCCcCCCCCCCcccccccCCcEEEccCccccccccccccCCCCCcEEECcCCcccccccccccCCCCCcEEEccCC
Q 048006 218 TLVLSDNNLTSSIYPWLPNISSIFISIDLGFNQLQGSIPESFQHMVYLEHLRLSFNELEGGIPKFFGNMCSLITLNLSNN 297 (833)
Q Consensus 218 ~L~Ls~n~l~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n 297 (833)
+|++++|.++. +|..+. ++ |++|++++|.+++..|..|..+++|++|++++|++++..+..+..+++|++|++++|
T Consensus 175 ~L~l~~n~l~~-l~~~~~--~~-L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N 250 (330)
T 1xku_A 175 YIRIADTNITT-IPQGLP--PS-LTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNN 250 (330)
T ss_dssp EEECCSSCCCS-CCSSCC--TT-CSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSS
T ss_pred EEECCCCcccc-CCcccc--cc-CCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCC
Confidence 88888888874 444443 34 778888888887777777778888888888888877766667777777777777777
Q ss_pred CCCchhhHHHhhcCCccccCCccEEEcccccccccChhhhcCCCCCCEEECcCCccccccCCCccCC------ccccEEE
Q 048006 298 KLSGQLSEIIQNLSSGCLENSLKSLYLENSLTGVISESFFSNISNLKELHLANNPLVLKLSHDWVPP------FQLIIIS 371 (833)
Q Consensus 298 ~l~~~~~~~l~~l~~~~~~~~L~~L~L~~~~~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~------~~L~~L~ 371 (833)
+++ .+|..+. .+++|++|++++|+++...+..|... ..++.++
T Consensus 251 ~l~-~lp~~l~------------------------------~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~ 299 (330)
T 1xku_A 251 KLV-KVPGGLA------------------------------DHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVS 299 (330)
T ss_dssp CCS-SCCTTTT------------------------------TCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEE
T ss_pred cCc-cCChhhc------------------------------cCCCcCEEECCCCcCCccChhhcCCcccccccccccceE
Confidence 776 3343344 44455555555555544433333221 3344444
Q ss_pred ccCccCCC--CCChhhcccccccEEeecCC
Q 048006 372 LSSCKIGP--HFPKWLQTQNQIELLDISNT 399 (833)
Q Consensus 372 L~~~~l~~--~~~~~l~~l~~L~~L~Ls~n 399 (833)
+++|.+.. ..|..+..+..++.+++++|
T Consensus 300 l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 300 LFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329 (330)
T ss_dssp CCSSSSCGGGSCGGGGTTCCCGGGEEC---
T ss_pred eecCcccccccCccccccccceeEEEeccc
Confidence 44444331 34455555666666666555
No 50
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.96 E-value=5.2e-28 Score=268.37 Aligned_cols=253 Identities=22% Similarity=0.217 Sum_probs=191.1
Q ss_pred CceeecCCCcccccccccccccCCcccEEEcCCCcCcCCCCCcccCCCCCcEEEccCCcccccCCCCccCcCCccEEEcc
Q 048006 462 SSFLNLSKNRFSGSISFLCSISGSKLTYVDLSSNLLSGKLPDCWWTFDSLVILNLENNSFSGRIPDSMGFLQNIQTLSLH 541 (833)
Q Consensus 462 L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~ 541 (833)
...++.++..++...... .+.++.|++++|++++..+..|..+++|++|+|++|.+++..+..|.++++|++|+|+
T Consensus 45 ~~~v~c~~~~l~~iP~~~----~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~ 120 (440)
T 3zyj_A 45 FSKVICVRKNLREVPDGI----STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELF 120 (440)
T ss_dssp SCEEECCSCCCSSCCSCC----CTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECC
T ss_pred CCEEEeCCCCcCcCCCCC----CCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECC
Confidence 445666666665433222 2567888888888887777778888888888888888887777777888888888888
Q ss_pred cCcCccccCccccCCCCCcEeccCCCccCCCCCcchhhcCCccceEEecCCc-ccccccccccCCCCCCEEeccCCcCcc
Q 048006 542 NNRLTGELSSSFRNCSQLRLLDLGKNALYGEIPTWMGESLSNLIVLSLKSNK-FHGKIPFQLCQLAFLQVLDLSLNNISG 620 (833)
Q Consensus 542 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~N~-l~~~~~~~l~~l~~L~~L~Ls~N~l~~ 620 (833)
+|++++..+..|..+++|++|++++|++. .+|...+..+++|++|++++|. +....+..+.++++|++|++++|+++
T Consensus 121 ~n~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~- 198 (440)
T 3zyj_A 121 DNRLTTIPNGAFVYLSKLKELWLRNNPIE-SIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR- 198 (440)
T ss_dssp SSCCSSCCTTTSCSCSSCCEEECCSCCCC-EECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-
T ss_pred CCcCCeeCHhHhhccccCceeeCCCCccc-ccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-
Confidence 88888766667788888888888888877 5555444467888888888743 44333446777888888888888776
Q ss_pred cCCccccccccccccCCCCcccccceEEeeccCcchhccccCcccEEEccCCcCCCCCchhhhcccCCcEEECCCccccc
Q 048006 621 KIPKCFNNFTAMTQERSSDPTIKDKLMLTWKGSEREYRSTLGLVKSLELSNNNLNGAVPEEIMDLVGLVALNLSKNHLTG 700 (833)
Q Consensus 621 ~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 700 (833)
.+| .+..+ ++|+.|+|++|++++..|..|.++++|++|+|++|++++
T Consensus 199 ~~~-~~~~l--------------------------------~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 245 (440)
T 3zyj_A 199 EIP-NLTPL--------------------------------IKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQV 245 (440)
T ss_dssp SCC-CCTTC--------------------------------SSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCE
T ss_pred ccc-ccCCC--------------------------------cccCEEECCCCccCccChhhhccCccCCEEECCCCceeE
Confidence 333 23333 345888888888888888888888889999999998888
Q ss_pred cCCcccCCCCCCCEEeCCCCcCcccCCccccCCCCCCEEECcCCcCccCCCCc
Q 048006 701 QISPKIGQLKSLDFLDLSRNQLVGGIPSSLSQLSGLSVMDLSYNNLSGKIPTV 753 (833)
Q Consensus 701 ~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~ 753 (833)
..+..|.++++|+.|+|++|++++..+..|..+++|+.|++++|++.+.+...
T Consensus 246 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~l~ 298 (440)
T 3zyj_A 246 IERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCNCDIL 298 (440)
T ss_dssp ECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEECSSTTH
T ss_pred EChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccCCCCch
Confidence 88888888888999999999888877778888888889999888888876543
No 51
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.96 E-value=1.5e-28 Score=259.00 Aligned_cols=236 Identities=25% Similarity=0.255 Sum_probs=202.5
Q ss_pred CcccEEEcCCCcCcCCCCCcccCCCCCcEEEccCCccccc--CCCCccCcCCccEEEcccCcCccccCccccCCCCCcEe
Q 048006 485 SKLTYVDLSSNLLSGKLPDCWWTFDSLVILNLENNSFSGR--IPDSMGFLQNIQTLSLHNNRLTGELSSSFRNCSQLRLL 562 (833)
Q Consensus 485 ~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~--~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 562 (833)
+++++|++++|.++...+..|..+++|++|++++|.++.. .+..+..+++|++|++++|.++. +|..+..+++|++|
T Consensus 28 ~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~-l~~~~~~l~~L~~L 106 (306)
T 2z66_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHL 106 (306)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEE-EEEEEETCTTCCEE
T ss_pred CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCcccc-ChhhcCCCCCCCEE
Confidence 5788889999988866666688999999999999988733 35566778999999999999984 56678899999999
Q ss_pred ccCCCccCCCCCcchhhcCCccceEEecCCcccccccccccCCCCCCEEeccCCcCcc-cCCccccccccccccCCCCcc
Q 048006 563 DLGKNALYGEIPTWMGESLSNLIVLSLKSNKFHGKIPFQLCQLAFLQVLDLSLNNISG-KIPKCFNNFTAMTQERSSDPT 641 (833)
Q Consensus 563 ~L~~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~-~~p~~~~~l~~L~~l~~~~~~ 641 (833)
++++|++.+..+...+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+ ..|..+..+++|
T Consensus 107 ~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L--------- 177 (306)
T 2z66_A 107 DFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNL--------- 177 (306)
T ss_dssp ECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTC---------
T ss_pred ECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCC---------
Confidence 9999999843332334468999999999999998888889999999999999999986 567777766665
Q ss_pred cccceEEeeccCcchhccccCcccEEEccCCcCCCCCchhhhcccCCcEEECCCccccccCCcccCCCCCCCEEeCCCCc
Q 048006 642 IKDKLMLTWKGSEREYRSTLGLVKSLELSNNNLNGAVPEEIMDLVGLVALNLSKNHLTGQISPKIGQLKSLDFLDLSRNQ 721 (833)
Q Consensus 642 ~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~ 721 (833)
+.|++++|++++..|..+..+++|++|+|++|++++..+..+..+++|+.|++++|+
T Consensus 178 -----------------------~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 234 (306)
T 2z66_A 178 -----------------------TFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNH 234 (306)
T ss_dssp -----------------------CEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSC
T ss_pred -----------------------CEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCC
Confidence 999999999998889999999999999999999998888789999999999999999
Q ss_pred CcccCCccccCCC-CCCEEECcCCcCccCCCCc
Q 048006 722 LVGGIPSSLSQLS-GLSVMDLSYNNLSGKIPTV 753 (833)
Q Consensus 722 l~~~~p~~l~~l~-~L~~L~ls~N~l~g~ip~~ 753 (833)
+++..|..+..++ +|++|++++|+++|.++..
T Consensus 235 l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~~ 267 (306)
T 2z66_A 235 IMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQ 267 (306)
T ss_dssp CCBCSSSSCCCCCTTCCEEECTTCCEECSGGGH
T ss_pred CcccCHHHHHhhhccCCEEEccCCCeecccChH
Confidence 9999999999985 9999999999999877644
No 52
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.96 E-value=6.2e-31 Score=304.68 Aligned_cols=337 Identities=16% Similarity=0.171 Sum_probs=204.8
Q ss_pred CCCCcccceEecCCCCcEEEEECCCCCCCCCCcceecCccccCCCCCCEEeCCCCCCC---CCCccccc-----------
Q 048006 43 RDCCKWTGLRCSNKTNHVILLDLQPIDFDSFPLRGTISPALLKLHDLRHLNLSFNDFS---GSPIPEFI----------- 108 (833)
Q Consensus 43 ~~~c~w~gv~c~~~~~~v~~l~L~~~~~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~~~---~~~~p~~~----------- 108 (833)
.-|++|.++.+.. .+ .+.+.. ......+..+.++++|++|+|+++... +. +|..+
T Consensus 39 ~vck~W~~~~~~~--~~--~l~~~~------~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~-~~~~~~~~~~~~l~~l 107 (592)
T 3ogk_B 39 LVCRRWFKIDSET--RE--HVTMAL------CYTATPDRLSRRFPNLRSLKLKGKPRAAMFNL-IPENWGGYVTPWVTEI 107 (592)
T ss_dssp TSCHHHHHHHHHH--CC--EEEESC------GGGSCHHHHHHHCTTCSEEEEECSCGGGGGTC-SCTTSCCBCHHHHHHH
T ss_pred HHhHHHHHhhhcc--cc--EEEEee------ccccChHHHHHhCCCCeEEEecCCcchhhccc-ccccccccchHHHHHH
Confidence 3466899986532 22 223332 223334455678899999999875321 11 22222
Q ss_pred -cCCCCCCEEEccCCCCCCCCCcccCCc--cccceecccCccCC-CCCCcccccCCCCCcEEecCCCCCCCCc--hhHHh
Q 048006 109 -GSLSKLRYLDLFGTVFAGPIPPQLGNL--SRLQHLDLGSNYLF-STGNLDWLSHLSYLRYLNLDESNLANSS--DWFQV 182 (833)
Q Consensus 109 -~~l~~L~~L~Ls~n~l~~~~p~~~~~l--~~L~~L~Ls~n~~~-~~~~~~~l~~l~~L~~L~Ls~n~~~~~~--~~~~~ 182 (833)
..+++|++|+|++|.+++..+..+... .+|++|++++|... .........++++|++|++++|.+++.. .++..
T Consensus 108 ~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~ 187 (592)
T 3ogk_B 108 SNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHEL 187 (592)
T ss_dssp HHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHH
T ss_pred HhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHH
Confidence 278999999999998877666666664 44999999988621 1011122347889999999999876542 14555
Q ss_pred hcCCCCCCEEEccCCCCCCCCCccc-cccccCCCCCEEEccCCcCCCCCCCcccccccCCcEEEccCcccc---cccccc
Q 048006 183 IGKLHSLKTLSLHSCYLPPVIPLSL-NHLNSSTSLETLVLSDNNLTSSIYPWLPNISSIFISIDLGFNQLQ---GSIPES 258 (833)
Q Consensus 183 l~~l~~L~~L~Ls~n~l~~~~~~~~-~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~~L~~L~Ls~n~l~---~~~p~~ 258 (833)
...+++|++|++++|.+++.....+ .....+++|+.|++++|.+.+ ++..+..+++ |++|+++..... +..+..
T Consensus 188 ~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~-L~~L~l~~~~~~~~~~~~~~~ 265 (592)
T 3ogk_B 188 AQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAAN-LEEFCGGSLNEDIGMPEKYMN 265 (592)
T ss_dssp HHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTT-CCEEEECBCCCCTTCTTSSSC
T ss_pred HhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhhH-HHhhcccccccccchHHHHHH
Confidence 6778889999998888864322111 122334888888888887775 4566677777 888888753322 233455
Q ss_pred ccCCCCCcEEECcCCcccccccccccCCCCCcEEEccCCCCCchhh-HHHhhcCCccccCCccEEEcccccccccChhhh
Q 048006 259 FQHMVYLEHLRLSFNELEGGIPKFFGNMCSLITLNLSNNKLSGQLS-EIIQNLSSGCLENSLKSLYLENSLTGVISESFF 337 (833)
Q Consensus 259 ~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~-~~l~~l~~~~~~~~L~~L~L~~~~~~~i~~~~~ 337 (833)
+..+++|+.|+++++.. +.+|..+..+++|++|++++|.+++... ..+..++ +|+.|++.++.........+
T Consensus 266 l~~~~~L~~L~l~~~~~-~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~------~L~~L~L~~~~~~~~l~~~~ 338 (592)
T 3ogk_B 266 LVFPRKLCRLGLSYMGP-NEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCP------NLEVLETRNVIGDRGLEVLA 338 (592)
T ss_dssp CCCCTTCCEEEETTCCT-TTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCT------TCCEEEEEGGGHHHHHHHHH
T ss_pred hhccccccccCccccch-hHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCc------CCCEEeccCccCHHHHHHHH
Confidence 67777888888877543 3566777778888888888887665443 3345555 66666665333222222233
Q ss_pred cCCCCCCEEECcC-----------CccccccCCCccCCccccEEEccCccCCCCCChhhcccccccEEeecCCccccccc
Q 048006 338 SNISNLKELHLAN-----------NPLVLKLSHDWVPPFQLIIISLSSCKIGPHFPKWLQTQNQIELLDISNTGISDTIP 406 (833)
Q Consensus 338 ~~l~~L~~L~L~~-----------n~l~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~ 406 (833)
..+++|++|++++ |.++.. .++.....+++|++|+++.|.+++..+
T Consensus 339 ~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~-----------------------~~~~l~~~~~~L~~L~l~~~~l~~~~~ 395 (592)
T 3ogk_B 339 QYCKQLKRLRIERGADEQGMEDEEGLVSQR-----------------------GLIALAQGCQELEYMAVYVSDITNESL 395 (592)
T ss_dssp HHCTTCCEEEEECCCCSSTTSSTTCCCCHH-----------------------HHHHHHHHCTTCSEEEEEESCCCHHHH
T ss_pred HhCCCCCEEEeecCccccccccccCccCHH-----------------------HHHHHHhhCccCeEEEeecCCccHHHH
Confidence 4455566665552 222211 112223456677777776677766655
Q ss_pred hhHHhhcccccEEEcc
Q 048006 407 DWFWNLSNKFSFLDLA 422 (833)
Q Consensus 407 ~~~~~~~~~L~~L~L~ 422 (833)
..+....++|++|+++
T Consensus 396 ~~l~~~~~~L~~L~l~ 411 (592)
T 3ogk_B 396 ESIGTYLKNLCDFRLV 411 (592)
T ss_dssp HHHHHHCCSCCEEEEE
T ss_pred HHHHhhCCCCcEEEEe
Confidence 5555544456666654
No 53
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.96 E-value=9.2e-28 Score=267.36 Aligned_cols=234 Identities=24% Similarity=0.237 Sum_probs=203.0
Q ss_pred CcccEEEcCCCcCcCCCCCcccCCCCCcEEEccCCcccccCCCCccCcCCccEEEcccCcCccccCccccCCCCCcEecc
Q 048006 485 SKLTYVDLSSNLLSGKLPDCWWTFDSLVILNLENNSFSGRIPDSMGFLQNIQTLSLHNNRLTGELSSSFRNCSQLRLLDL 564 (833)
Q Consensus 485 ~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 564 (833)
+++++|++++|.+++..+..|..+++|++|+|++|.+++..+..|.++++|++|+|++|++++..+..|..+++|++|++
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 154 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWL 154 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEEC
T ss_pred CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEEC
Confidence 67888899999998888888999999999999999999888888999999999999999999887788999999999999
Q ss_pred CCCccCCCCCcchhhcCCccceEEecCC-cccccccccccCCCCCCEEeccCCcCcccCCccccccccccccCCCCcccc
Q 048006 565 GKNALYGEIPTWMGESLSNLIVLSLKSN-KFHGKIPFQLCQLAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIK 643 (833)
Q Consensus 565 ~~n~l~~~~p~~~~~~l~~L~~L~L~~N-~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~ 643 (833)
++|++. .+|...+..+++|++|++++| .+....+..+.++++|++|++++|++++. | .+..+
T Consensus 155 ~~N~l~-~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-~-~~~~l-------------- 217 (452)
T 3zyi_A 155 RNNPIE-SIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM-P-NLTPL-------------- 217 (452)
T ss_dssp CSCCCC-EECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC-C-CCTTC--------------
T ss_pred CCCCcc-eeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc-c-ccccc--------------
Confidence 999988 666655557899999999985 44444445688999999999999998743 3 24333
Q ss_pred cceEEeeccCcchhccccCcccEEEccCCcCCCCCchhhhcccCCcEEECCCccccccCCcccCCCCCCCEEeCCCCcCc
Q 048006 644 DKLMLTWKGSEREYRSTLGLVKSLELSNNNLNGAVPEEIMDLVGLVALNLSKNHLTGQISPKIGQLKSLDFLDLSRNQLV 723 (833)
Q Consensus 644 ~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 723 (833)
++|+.|+|++|++++..|..|.++++|+.|+|++|++++..|..|..+++|+.|+|++|+++
T Consensus 218 ------------------~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 279 (452)
T 3zyi_A 218 ------------------VGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLS 279 (452)
T ss_dssp ------------------TTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCS
T ss_pred ------------------ccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCC
Confidence 34599999999999988999999999999999999999999999999999999999999999
Q ss_pred ccCCccccCCCCCCEEECcCCcCccCCCCc
Q 048006 724 GGIPSSLSQLSGLSVMDLSYNNLSGKIPTV 753 (833)
Q Consensus 724 ~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~ 753 (833)
+..+..+..+++|+.|++++|++.+.+...
T Consensus 280 ~~~~~~~~~l~~L~~L~L~~Np~~CdC~~~ 309 (452)
T 3zyi_A 280 SLPHDLFTPLRYLVELHLHHNPWNCDCDIL 309 (452)
T ss_dssp CCCTTSSTTCTTCCEEECCSSCEECSTTTH
T ss_pred ccChHHhccccCCCEEEccCCCcCCCCCch
Confidence 888888999999999999999999887643
No 54
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.95 E-value=1.5e-27 Score=265.75 Aligned_cols=252 Identities=25% Similarity=0.267 Sum_probs=220.4
Q ss_pred cccEEEcCCCcCcCCCCCcccCCCCCcEEEccCCcccccCCCCccCcCCccEEEcccCcCccccCccccCCCCCcEeccC
Q 048006 486 KLTYVDLSSNLLSGKLPDCWWTFDSLVILNLENNSFSGRIPDSMGFLQNIQTLSLHNNRLTGELSSSFRNCSQLRLLDLG 565 (833)
Q Consensus 486 ~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 565 (833)
....++.++..++ .+|..+. +++++|+|++|.+++..+..|..+++|++|+|++|++++..+..|.++++|++|+++
T Consensus 55 ~~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~ 131 (452)
T 3zyi_A 55 QFSKVVCTRRGLS-EVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELF 131 (452)
T ss_dssp SSCEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCcEEEECCCCcC-ccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECC
Confidence 4567888888888 4565543 689999999999999999999999999999999999999999999999999999999
Q ss_pred CCccCCCCCcchhhcCCccceEEecCCcccccccccccCCCCCCEEeccCCcCcccCC-ccccccccccccCCCCccccc
Q 048006 566 KNALYGEIPTWMGESLSNLIVLSLKSNKFHGKIPFQLCQLAFLQVLDLSLNNISGKIP-KCFNNFTAMTQERSSDPTIKD 644 (833)
Q Consensus 566 ~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~l~~~~~~~~~ 644 (833)
+|+++ .+|...+..+++|++|+|++|++....+..+..+++|+.|++++|+..+.++ ..|..+++|
T Consensus 132 ~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L------------ 198 (452)
T 3zyi_A 132 DNWLT-VIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNL------------ 198 (452)
T ss_dssp SSCCS-BCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTC------------
T ss_pred CCcCC-ccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCC------------
Confidence 99998 6666655579999999999999997777789999999999999955444443 456665555
Q ss_pred ceEEeeccCcchhccccCcccEEEccCCcCCCCCchhhhcccCCcEEECCCccccccCCcccCCCCCCCEEeCCCCcCcc
Q 048006 645 KLMLTWKGSEREYRSTLGLVKSLELSNNNLNGAVPEEIMDLVGLVALNLSKNHLTGQISPKIGQLKSLDFLDLSRNQLVG 724 (833)
Q Consensus 645 ~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 724 (833)
+.|+|++|++++ +| .+..+++|++|+|++|++++..|..|.++++|+.|+|++|++++
T Consensus 199 --------------------~~L~L~~n~l~~-~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 256 (452)
T 3zyi_A 199 --------------------KYLNLGMCNIKD-MP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSL 256 (452)
T ss_dssp --------------------CEEECTTSCCSS-CC-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCE
T ss_pred --------------------CEEECCCCcccc-cc-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCce
Confidence 999999999985 44 48899999999999999999999999999999999999999999
Q ss_pred cCCccccCCCCCCEEECcCCcCccCCCCc-cccCccccccccCCCCCCCCCC
Q 048006 725 GIPSSLSQLSGLSVMDLSYNNLSGKIPTV-TQLQSFNDTVYAGNPELCGLPL 775 (833)
Q Consensus 725 ~~p~~l~~l~~L~~L~ls~N~l~g~ip~~-~~~~~l~~~~~~gn~~lc~~~~ 775 (833)
..|..|..+++|+.|++++|++++..+.. ..+..+..+.+.+|||.|+|.+
T Consensus 257 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~~ 308 (452)
T 3zyi_A 257 IERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCDCDI 308 (452)
T ss_dssp ECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEECSTTT
T ss_pred ECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCCCCCc
Confidence 99999999999999999999999766654 4567788889999999999973
No 55
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.95 E-value=6e-28 Score=255.86 Aligned_cols=227 Identities=21% Similarity=0.280 Sum_probs=196.5
Q ss_pred CCcccEEEcCCCcCcCCCCCcccCCCCCcEEEccCCcccccCCCCccCcCCccEEEcccCcCccccCccccCCCCCcEec
Q 048006 484 GSKLTYVDLSSNLLSGKLPDCWWTFDSLVILNLENNSFSGRIPDSMGFLQNIQTLSLHNNRLTGELSSSFRNCSQLRLLD 563 (833)
Q Consensus 484 ~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 563 (833)
.+.++.|++++|.++ .+|..+..+++|++|++++|.++ .+|..++.+++|++|++++|+++ .+|..+..+++|++|+
T Consensus 80 ~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~ 156 (328)
T 4fcg_A 80 QPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELS 156 (328)
T ss_dssp STTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEE
T ss_pred ccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEE
Confidence 378999999999998 67888888999999999999999 78888999999999999999999 7788899999999999
Q ss_pred cCCCccCCCCCcchh--------hcCCccceEEecCCcccccccccccCCCCCCEEeccCCcCcccCCcccccccccccc
Q 048006 564 LGKNALYGEIPTWMG--------ESLSNLIVLSLKSNKFHGKIPFQLCQLAFLQVLDLSLNNISGKIPKCFNNFTAMTQE 635 (833)
Q Consensus 564 L~~n~l~~~~p~~~~--------~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l 635 (833)
+++|++.+.+|..+. ..+++|++|++++|+++ .+|..+..+++|++|++++|++++ +|..+..+++|
T Consensus 157 L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L--- 231 (328)
T 4fcg_A 157 IRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKL--- 231 (328)
T ss_dssp EEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-CCGGGGGCTTC---
T ss_pred CCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-CchhhccCCCC---
Confidence 999988889988764 14888999999999888 778888888899999999998884 55556665555
Q ss_pred CCCCcccccceEEeeccCcchhccccCcccEEEccCCcCCCCCchhhhcccCCcEEECCCccccccCCcccCCCCCCCEE
Q 048006 636 RSSDPTIKDKLMLTWKGSEREYRSTLGLVKSLELSNNNLNGAVPEEIMDLVGLVALNLSKNHLTGQISPKIGQLKSLDFL 715 (833)
Q Consensus 636 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L 715 (833)
+.|++++|++.+.+|..++.+++|++|+|++|++.+.+|..+.++++|+.|
T Consensus 232 -----------------------------~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L 282 (328)
T 4fcg_A 232 -----------------------------EELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKL 282 (328)
T ss_dssp -----------------------------CEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEE
T ss_pred -----------------------------CEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEE
Confidence 888999988888888888888999999999988888888888888999999
Q ss_pred eCCCCcCcccCCccccCCCCCCEEECcCCcCc
Q 048006 716 DLSRNQLVGGIPSSLSQLSGLSVMDLSYNNLS 747 (833)
Q Consensus 716 ~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~ 747 (833)
+|++|++.+.+|..+.++++|+.+++..|.+.
T Consensus 283 ~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 283 DLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314 (328)
T ss_dssp ECTTCTTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred eCCCCCchhhccHHHhhccCceEEeCCHHHHH
Confidence 99999988889999999999999888877554
No 56
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.95 E-value=6.4e-28 Score=251.25 Aligned_cols=248 Identities=22% Similarity=0.170 Sum_probs=210.3
Q ss_pred ccEEEcCCCcCcCCCCCcccCCCCCcEEEccCCcccccCCCCccCcCCccEEEcccCcCccccCccccCCCCCcEeccCC
Q 048006 487 LTYVDLSSNLLSGKLPDCWWTFDSLVILNLENNSFSGRIPDSMGFLQNIQTLSLHNNRLTGELSSSFRNCSQLRLLDLGK 566 (833)
Q Consensus 487 L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 566 (833)
-++++.+++.++. +|..+ .++|++|++++|.+++..+..|..+++|++|++++|.+++..+..|..+++|++|++++
T Consensus 13 ~~~~~c~~~~l~~-ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 89 (285)
T 1ozn_A 13 KVTTSCPQQGLQA-VPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD 89 (285)
T ss_dssp SCEEECCSSCCSS-CCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CeEEEcCcCCccc-CCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCC
Confidence 3678888888874 45433 46899999999999988888899999999999999999988888999999999999999
Q ss_pred Cc-cCCCC-CcchhhcCCccceEEecCCcccccccccccCCCCCCEEeccCCcCcccCCccccccccccccCCCCccccc
Q 048006 567 NA-LYGEI-PTWMGESLSNLIVLSLKSNKFHGKIPFQLCQLAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKD 644 (833)
Q Consensus 567 n~-l~~~~-p~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~ 644 (833)
|+ +. .+ |..+. .+++|++|++++|.+++..|..+..+++|++|++++|++.+..+..|..+++|
T Consensus 90 n~~l~-~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L------------ 155 (285)
T 1ozn_A 90 NAQLR-SVDPATFH-GLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNL------------ 155 (285)
T ss_dssp CTTCC-CCCTTTTT-TCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC------------
T ss_pred CCCcc-ccCHHHhc-CCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCc------------
Confidence 97 66 55 44444 78999999999999998888889999999999999999987766667766666
Q ss_pred ceEEeeccCcchhccccCcccEEEccCCcCCCCCchhhhcccCCcEEECCCccccccCCcccCCCCCCCEEeCCCCcCcc
Q 048006 645 KLMLTWKGSEREYRSTLGLVKSLELSNNNLNGAVPEEIMDLVGLVALNLSKNHLTGQISPKIGQLKSLDFLDLSRNQLVG 724 (833)
Q Consensus 645 ~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 724 (833)
+.|++++|++++..+..+..+++|++|++++|.+++..|..|..+++|+.|++++|++++
T Consensus 156 --------------------~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 215 (285)
T 1ozn_A 156 --------------------THLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSA 215 (285)
T ss_dssp --------------------CEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSC
T ss_pred --------------------cEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCc
Confidence 899999999997777779999999999999999999999999999999999999999998
Q ss_pred cCCccccCCCCCCEEECcCCcCccCCCCccccCccccccccCCCCCC
Q 048006 725 GIPSSLSQLSGLSVMDLSYNNLSGKIPTVTQLQSFNDTVYAGNPELC 771 (833)
Q Consensus 725 ~~p~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~l~~~~~~gn~~lc 771 (833)
..+..+..+++|++|++++|++.+.++......++.......+...|
T Consensus 216 ~~~~~~~~l~~L~~L~l~~N~~~c~~~~~~~~~~l~~~~~~~~~~~c 262 (285)
T 1ozn_A 216 LPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFRGSSSEVPC 262 (285)
T ss_dssp CCHHHHTTCTTCCEEECCSSCEECSGGGHHHHHHHHHCCSEECCCBE
T ss_pred CCHHHcccCcccCEEeccCCCccCCCCcHHHHHHHHhcccccCcccc
Confidence 87788999999999999999999988765555555554444454433
No 57
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.95 E-value=2.1e-28 Score=263.34 Aligned_cols=275 Identities=21% Similarity=0.201 Sum_probs=162.9
Q ss_pred eecccCcccccCCCCCCCCceeecCCCcccccccccccccCCcccEEEcCCCcCcCCCCCcccCCCCCcEEEccCCcccc
Q 048006 444 IDISSNHFEGLIPPLPSNSSFLNLSKNRFSGSISFLCSISGSKLTYVDLSSNLLSGKLPDCWWTFDSLVILNLENNSFSG 523 (833)
Q Consensus 444 l~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 523 (833)
.+++++.++......+++++.|++++|++++..+.. ...+++|++|++++|.+++..+..|..+++|++|++++|++++
T Consensus 36 c~~~~~~l~~iP~~~~~~L~~L~l~~n~i~~~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~ 114 (353)
T 2z80_A 36 CKGSSGSLNSIPSGLTEAVKSLDLSNNRITYISNSD-LQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSN 114 (353)
T ss_dssp EECCSTTCSSCCTTCCTTCCEEECTTSCCCEECTTT-TTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSS
T ss_pred eeCCCCCcccccccccccCcEEECCCCcCcccCHHH-hccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCc
Confidence 455555555443334445555555555554432211 1124556666666666655555555556666666666666654
Q ss_pred cCCCCccCcCCccEEEcccCcCccccC-ccccCCCCCcEeccCCCc-cCCCCCcchhhcCCccceEEecCCccccccccc
Q 048006 524 RIPDSMGFLQNIQTLSLHNNRLTGELS-SSFRNCSQLRLLDLGKNA-LYGEIPTWMGESLSNLIVLSLKSNKFHGKIPFQ 601 (833)
Q Consensus 524 ~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~-l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~~~~ 601 (833)
..+..+..+++|++|++++|++++..+ ..|..+++|++|++++|. +. .++...+..+++|++|++++|.+++..|..
T Consensus 115 ~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 193 (353)
T 2z80_A 115 LSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFT-KIQRKDFAGLTFLEELEIDASDLQSYEPKS 193 (353)
T ss_dssp CCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCC-EECTTTTTTCCEEEEEEEEETTCCEECTTT
T ss_pred CCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCcccc-ccCHHHccCCCCCCEEECCCCCcCccCHHH
Confidence 433335555666666666666553333 345556666666666653 33 333222224556666666666665555555
Q ss_pred ccCCCCCCEEeccCCcCcccCCccccccccccccCCCCcccccceEEeeccCcchhccccCcccEEEccCCcCCCCCchh
Q 048006 602 LCQLAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKDKLMLTWKGSEREYRSTLGLVKSLELSNNNLNGAVPEE 681 (833)
Q Consensus 602 l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~ 681 (833)
+..+++|++|++++|++.. +|.. +...+++|+.|++++|++++..+..
T Consensus 194 l~~l~~L~~L~l~~n~l~~-~~~~-------------------------------~~~~~~~L~~L~L~~n~l~~~~~~~ 241 (353)
T 2z80_A 194 LKSIQNVSHLILHMKQHIL-LLEI-------------------------------FVDVTSSVECLELRDTDLDTFHFSE 241 (353)
T ss_dssp TTTCSEEEEEEEECSCSTT-HHHH-------------------------------HHHHTTTEEEEEEESCBCTTCCCC-
T ss_pred HhccccCCeecCCCCcccc-chhh-------------------------------hhhhcccccEEECCCCccccccccc
Confidence 5566666666666665532 2211 1223455688888888888765544
Q ss_pred hh---cccCCcEEECCCccccc----cCCcccCCCCCCCEEeCCCCcCcccCCcc-ccCCCCCCEEECcCCcCccCCCCc
Q 048006 682 IM---DLVGLVALNLSKNHLTG----QISPKIGQLKSLDFLDLSRNQLVGGIPSS-LSQLSGLSVMDLSYNNLSGKIPTV 753 (833)
Q Consensus 682 l~---~l~~L~~L~Ls~N~l~~----~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~-l~~l~~L~~L~ls~N~l~g~ip~~ 753 (833)
+. ....++.++|+++.+++ .+|+.+..+++|+.|++++|+++ .+|.. |..+++|++|++++|++.|.+|..
T Consensus 242 l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~~~~~~~l 320 (353)
T 2z80_A 242 LSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCPRI 320 (353)
T ss_dssp -----CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCHHHH
T ss_pred cccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCccCcCCCc
Confidence 43 35667888888887775 46777888889999999999998 44544 588889999999999998887743
No 58
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.95 E-value=3.9e-28 Score=261.23 Aligned_cols=274 Identities=20% Similarity=0.209 Sum_probs=228.7
Q ss_pred ceeecCCCcccccccccccccCCcccEEEcCCCcCcCCCCCcccCCCCCcEEEccCCcccccCCCCccCcCCccEEEccc
Q 048006 463 SFLNLSKNRFSGSISFLCSISGSKLTYVDLSSNLLSGKLPDCWWTFDSLVILNLENNSFSGRIPDSMGFLQNIQTLSLHN 542 (833)
Q Consensus 463 ~~L~l~~n~l~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~ 542 (833)
...+.+++.++...... .++|++|++++|.+++..+..|..+++|++|++++|.+++..+..|..+++|++|++++
T Consensus 34 ~~c~~~~~~l~~iP~~~----~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~ 109 (353)
T 2z80_A 34 GICKGSSGSLNSIPSGL----TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSY 109 (353)
T ss_dssp SEEECCSTTCSSCCTTC----CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred eEeeCCCCCcccccccc----cccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCC
Confidence 44677788777543322 26899999999999987777899999999999999999988888899999999999999
Q ss_pred CcCccccCccccCCCCCcEeccCCCccCCCCCc-chhhcCCccceEEecCC-cccccccccccCCCCCCEEeccCCcCcc
Q 048006 543 NRLTGELSSSFRNCSQLRLLDLGKNALYGEIPT-WMGESLSNLIVLSLKSN-KFHGKIPFQLCQLAFLQVLDLSLNNISG 620 (833)
Q Consensus 543 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~-~~~~~l~~L~~L~L~~N-~l~~~~~~~l~~l~~L~~L~Ls~N~l~~ 620 (833)
|++++..+..|.++++|++|++++|++. .+|. ..+..+++|++|++++| .+.+..+..+.++++|+.|++++|++.+
T Consensus 110 n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 188 (353)
T 2z80_A 110 NYLSNLSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQS 188 (353)
T ss_dssp SCCSSCCHHHHTTCTTCSEEECTTCCCS-SSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCE
T ss_pred CcCCcCCHhHhCCCccCCEEECCCCCCc-ccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCc
Confidence 9999766666899999999999999998 6776 44447999999999999 4776667889999999999999999998
Q ss_pred cCCccccccccccccCCCCcccccceEEeeccCcchhccccCcccEEEccCCcCCCCCchhhhcccCCcEEECCCccccc
Q 048006 621 KIPKCFNNFTAMTQERSSDPTIKDKLMLTWKGSEREYRSTLGLVKSLELSNNNLNGAVPEEIMDLVGLVALNLSKNHLTG 700 (833)
Q Consensus 621 ~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 700 (833)
..|..+..+++| ++|++++|+++...+..+..+++|++|++++|++++
T Consensus 189 ~~~~~l~~l~~L--------------------------------~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~ 236 (353)
T 2z80_A 189 YEPKSLKSIQNV--------------------------------SHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDT 236 (353)
T ss_dssp ECTTTTTTCSEE--------------------------------EEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTT
T ss_pred cCHHHHhccccC--------------------------------CeecCCCCccccchhhhhhhcccccEEECCCCcccc
Confidence 888888777666 999999999974444445669999999999999998
Q ss_pred cCCcccC---CCCCCCEEeCCCCcCcc----cCCccccCCCCCCEEECcCCcCccCCCCc--cccCccccccccCCCCCC
Q 048006 701 QISPKIG---QLKSLDFLDLSRNQLVG----GIPSSLSQLSGLSVMDLSYNNLSGKIPTV--TQLQSFNDTVYAGNPELC 771 (833)
Q Consensus 701 ~~p~~l~---~l~~L~~L~Ls~N~l~~----~~p~~l~~l~~L~~L~ls~N~l~g~ip~~--~~~~~l~~~~~~gn~~lc 771 (833)
..+..+. ..+.++.++++++.+++ .+|+.+..+++|++|++++|+++ .+|.. ..+..+..+.+.+||+.|
T Consensus 237 ~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~~~ 315 (353)
T 2z80_A 237 FHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWDC 315 (353)
T ss_dssp CCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred ccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCccC
Confidence 7666544 36788999999999887 47888999999999999999999 45543 567788889999999999
Q ss_pred CCC
Q 048006 772 GLP 774 (833)
Q Consensus 772 ~~~ 774 (833)
+|+
T Consensus 316 ~~~ 318 (353)
T 2z80_A 316 SCP 318 (353)
T ss_dssp CHH
T ss_pred cCC
Confidence 885
No 59
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.95 E-value=8.9e-28 Score=253.05 Aligned_cols=251 Identities=22% Similarity=0.239 Sum_probs=219.5
Q ss_pred ccEEEcCCCcCcCCCCCcccCCCCCcEEEccCCcccccCCCCccCcCCccEEEcccCcCccc--cCccccCCCCCcEecc
Q 048006 487 LTYVDLSSNLLSGKLPDCWWTFDSLVILNLENNSFSGRIPDSMGFLQNIQTLSLHNNRLTGE--LSSSFRNCSQLRLLDL 564 (833)
Q Consensus 487 L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~--~~~~~~~l~~L~~L~L 564 (833)
-+.++.+++.++ .+|..+. ++|++|++++|.++...+..|..+++|++|++++|+++.. .+..+..+++|++|++
T Consensus 9 ~~~l~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L 85 (306)
T 2z66_A 9 GTEIRCNSKGLT-SVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDL 85 (306)
T ss_dssp TTEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEEC
T ss_pred CCEEEcCCCCcc-cCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEEC
Confidence 357888888888 4555443 6899999999999966666689999999999999999843 3667788999999999
Q ss_pred CCCccCCCCCcchhhcCCccceEEecCCccccccc-ccccCCCCCCEEeccCCcCcccCCccccccccccccCCCCcccc
Q 048006 565 GKNALYGEIPTWMGESLSNLIVLSLKSNKFHGKIP-FQLCQLAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIK 643 (833)
Q Consensus 565 ~~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~~-~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~ 643 (833)
++|.+. .+|..+. .+++|++|++++|.+++..+ ..+..+++|++|++++|.+.+..|..+..+++|
T Consensus 86 s~n~i~-~l~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L----------- 152 (306)
T 2z66_A 86 SFNGVI-TMSSNFL-GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSL----------- 152 (306)
T ss_dssp CSCSEE-EEEEEEE-TCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTC-----------
T ss_pred CCCccc-cChhhcC-CCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCC-----------
Confidence 999998 7887766 69999999999999997655 578999999999999999998888888777666
Q ss_pred cceEEeeccCcchhccccCcccEEEccCCcCCC-CCchhhhcccCCcEEECCCccccccCCcccCCCCCCCEEeCCCCcC
Q 048006 644 DKLMLTWKGSEREYRSTLGLVKSLELSNNNLNG-AVPEEIMDLVGLVALNLSKNHLTGQISPKIGQLKSLDFLDLSRNQL 722 (833)
Q Consensus 644 ~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~-~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l 722 (833)
++|++++|.+++ .+|..+..+++|++|++++|++++..|..+..+++|+.|+|++|++
T Consensus 153 ---------------------~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l 211 (306)
T 2z66_A 153 ---------------------EVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF 211 (306)
T ss_dssp ---------------------CEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCC
T ss_pred ---------------------CEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCcc
Confidence 999999999986 5788899999999999999999998899999999999999999999
Q ss_pred cccCCccccCCCCCCEEECcCCcCccCCCCc-ccc-CccccccccCCCCCCCCC
Q 048006 723 VGGIPSSLSQLSGLSVMDLSYNNLSGKIPTV-TQL-QSFNDTVYAGNPELCGLP 774 (833)
Q Consensus 723 ~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~-~~~-~~l~~~~~~gn~~lc~~~ 774 (833)
++..+..+..+++|++|++++|++++.+|.. ..+ ..+..+++.||++.|+|+
T Consensus 212 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~ 265 (306)
T 2z66_A 212 FSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCE 265 (306)
T ss_dssp SBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGG
T ss_pred CccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccC
Confidence 9888888999999999999999999988865 333 467888899999999875
No 60
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.95 E-value=5.4e-27 Score=260.16 Aligned_cols=251 Identities=24% Similarity=0.273 Sum_probs=169.3
Q ss_pred cccEEEcCCCcCcCCCCCcccCCCCCcEEEccCCcccccCCCCccCcCCccEEEcccCcCccccCccccCCCCCcEeccC
Q 048006 486 KLTYVDLSSNLLSGKLPDCWWTFDSLVILNLENNSFSGRIPDSMGFLQNIQTLSLHNNRLTGELSSSFRNCSQLRLLDLG 565 (833)
Q Consensus 486 ~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 565 (833)
....++.++..++ .+|..+. ++++.|+|++|++++..+..|..+++|++|+|++|++++..+..|.++++|++|+++
T Consensus 44 ~~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~ 120 (440)
T 3zyj_A 44 QFSKVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELF 120 (440)
T ss_dssp TSCEEECCSCCCS-SCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECC
T ss_pred CCCEEEeCCCCcC-cCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECC
Confidence 3456667766666 3454443 467777777777776666777777777777777777776666777777777777777
Q ss_pred CCccCCCCCcchhhcCCccceEEecCCcccccccccccCCCCCCEEeccCCcCcccC-CccccccccccccCCCCccccc
Q 048006 566 KNALYGEIPTWMGESLSNLIVLSLKSNKFHGKIPFQLCQLAFLQVLDLSLNNISGKI-PKCFNNFTAMTQERSSDPTIKD 644 (833)
Q Consensus 566 ~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~-p~~~~~l~~L~~l~~~~~~~~~ 644 (833)
+|+++ .+|...+..+++|++|++++|++....+..+..+++|+.|++++|+..+.+ +..|.++++|
T Consensus 121 ~n~l~-~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L------------ 187 (440)
T 3zyj_A 121 DNRLT-TIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNL------------ 187 (440)
T ss_dssp SSCCS-SCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSC------------
T ss_pred CCcCC-eeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhccccc------------
Confidence 77776 555443445777777777777777666666777777777777774433333 3345444444
Q ss_pred ceEEeeccCcchhccccCcccEEEccCCcCCCCCchhhhcccCCcEEECCCccccccCCcccCCCCCCCEEeCCCCcCcc
Q 048006 645 KLMLTWKGSEREYRSTLGLVKSLELSNNNLNGAVPEEIMDLVGLVALNLSKNHLTGQISPKIGQLKSLDFLDLSRNQLVG 724 (833)
Q Consensus 645 ~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 724 (833)
+.|++++|+++ .+| .+..+++|++|+|++|++++..|..|.++++|+.|+|++|++++
T Consensus 188 --------------------~~L~L~~n~l~-~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 245 (440)
T 3zyj_A 188 --------------------RYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQV 245 (440)
T ss_dssp --------------------CEEECTTSCCS-SCC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCE
T ss_pred --------------------CeecCCCCcCc-ccc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeE
Confidence 77777777776 344 36667777777777777777777777777777777777777777
Q ss_pred cCCccccCCCCCCEEECcCCcCccCCCCc-cccCccccccccCCCCCCCCC
Q 048006 725 GIPSSLSQLSGLSVMDLSYNNLSGKIPTV-TQLQSFNDTVYAGNPELCGLP 774 (833)
Q Consensus 725 ~~p~~l~~l~~L~~L~ls~N~l~g~ip~~-~~~~~l~~~~~~gn~~lc~~~ 774 (833)
..|..|..+++|+.|++++|++++..+.. ..+..+..+.+.+|||.|+|.
T Consensus 246 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~ 296 (440)
T 3zyj_A 246 IERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCNCD 296 (440)
T ss_dssp ECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEECSST
T ss_pred EChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccCCCC
Confidence 77777777777777777777777555443 345556666677777777764
No 61
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.95 E-value=8.7e-29 Score=286.64 Aligned_cols=351 Identities=17% Similarity=0.123 Sum_probs=190.3
Q ss_pred CCCCCEEEccCCcCCCCCCCccccc-ccCCcEEEccCcc-ccc-cccccccCCCCCcEEECcCCccccc----ccccccC
Q 048006 213 STSLETLVLSDNNLTSSIYPWLPNI-SSIFISIDLGFNQ-LQG-SIPESFQHMVYLEHLRLSFNELEGG----IPKFFGN 285 (833)
Q Consensus 213 ~~~L~~L~Ls~n~l~~~~~~~l~~l-~~~L~~L~Ls~n~-l~~-~~p~~~~~l~~L~~L~L~~n~l~~~----~p~~l~~ 285 (833)
+++|++|+|++|.+++..+..+... +..|++|++++|. ++. .++.....+++|++|+|++|.+++. ++..+..
T Consensus 111 ~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~ 190 (592)
T 3ogk_B 111 LRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQH 190 (592)
T ss_dssp CTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHH
T ss_pred CCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhc
Confidence 3666666666666655444444443 1126777776665 211 1222334677888888888877655 3334556
Q ss_pred CCCCcEEEccCCCCC----chhhHHHhhcCCccccCCccEEEcccccccccChhhhcCCCCCCEEECcCCccc---cccC
Q 048006 286 MCSLITLNLSNNKLS----GQLSEIIQNLSSGCLENSLKSLYLENSLTGVISESFFSNISNLKELHLANNPLV---LKLS 358 (833)
Q Consensus 286 l~~L~~L~Ls~n~l~----~~~~~~l~~l~~~~~~~~L~~L~L~~~~~~~i~~~~~~~l~~L~~L~L~~n~l~---~~~~ 358 (833)
+++|++|++++|.++ +.++..+..++ +|+.|++.++.+..++. .+..+++|++|+++..... ....
T Consensus 191 ~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~------~L~~L~L~~~~~~~l~~-~~~~~~~L~~L~l~~~~~~~~~~~~~ 263 (592)
T 3ogk_B 191 NTSLEVLNFYMTEFAKISPKDLETIARNCR------SLVSVKVGDFEILELVG-FFKAAANLEEFCGGSLNEDIGMPEKY 263 (592)
T ss_dssp CCCCCEEECTTCCCSSCCHHHHHHHHHHCT------TCCEEECSSCBGGGGHH-HHHHCTTCCEEEECBCCCCTTCTTSS
T ss_pred CCCccEEEeeccCCCccCHHHHHHHHhhCC------CCcEEeccCccHHHHHH-HHhhhhHHHhhcccccccccchHHHH
Confidence 778888888888876 34555566666 78888886666666664 5777888888888753222 2223
Q ss_pred CCccCCccccEEEccCccCCCCCChhhcccccccEEeecCCccccccchhHHhhcccccEEEcccccccc-cCCcccccc
Q 048006 359 HDWVPPFQLIIISLSSCKIGPHFPKWLQTQNQIELLDISNTGISDTIPDWFWNLSNKFSFLDLASNQIKG-KLPNLSSRF 437 (833)
Q Consensus 359 ~~~~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~p~~~~~~ 437 (833)
..+..+++|+.+.++++. ...+|..+..+++|++|++++|.+++.....+....++|++|+++ +.+.. .++..
T Consensus 264 ~~l~~~~~L~~L~l~~~~-~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~---- 337 (592)
T 3ogk_B 264 MNLVFPRKLCRLGLSYMG-PNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVL---- 337 (592)
T ss_dssp SCCCCCTTCCEEEETTCC-TTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHH----
T ss_pred HHhhccccccccCccccc-hhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHH----
Confidence 345556677777776643 235666677777777777777776554443333333456666665 22221 11100
Q ss_pred CCCCCceecccCcccccCCCCCCCCceeecCCCcccccccccccccCCcccEEEcCC-----------CcCcCC-CCCcc
Q 048006 438 GTSNPGIDISSNHFEGLIPPLPSNSSFLNLSKNRFSGSISFLCSISGSKLTYVDLSS-----------NLLSGK-LPDCW 505 (833)
Q Consensus 438 ~~~l~~l~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~ls~-----------n~l~~~-~~~~~ 505 (833)
...+++|++|++++ +.+++. ++..+
T Consensus 338 -------------------------------------------~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~ 374 (592)
T 3ogk_B 338 -------------------------------------------AQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALA 374 (592)
T ss_dssp -------------------------------------------HHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHH
T ss_pred -------------------------------------------HHhCCCCCEEEeecCccccccccccCccCHHHHHHHH
Confidence 00134555555552 333321 11112
Q ss_pred cCCCCCcEEEccCCcccccCCCCccC-cCCccEEEcc----cCcCccc-----cCccccCCCCCcEeccCCCc--cCCCC
Q 048006 506 WTFDSLVILNLENNSFSGRIPDSMGF-LQNIQTLSLH----NNRLTGE-----LSSSFRNCSQLRLLDLGKNA--LYGEI 573 (833)
Q Consensus 506 ~~l~~L~~L~Ls~N~l~~~~~~~~~~-l~~L~~L~L~----~n~l~~~-----~~~~~~~l~~L~~L~L~~n~--l~~~~ 573 (833)
..+++|++|+++.|.+++..+..+.. +++|++|+++ .|.+++. ++..+.++++|++|++++|. +++..
T Consensus 375 ~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~ 454 (592)
T 3ogk_B 375 QGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLG 454 (592)
T ss_dssp HHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHH
T ss_pred hhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHH
Confidence 33555666666555555444333333 5556666664 3444432 22234455666666665433 33333
Q ss_pred CcchhhcCCccceEEecCCcccc-cccccccCCCCCCEEeccCCcCc
Q 048006 574 PTWMGESLSNLIVLSLKSNKFHG-KIPFQLCQLAFLQVLDLSLNNIS 619 (833)
Q Consensus 574 p~~~~~~l~~L~~L~L~~N~l~~-~~~~~l~~l~~L~~L~Ls~N~l~ 619 (833)
+..+...+++|++|++++|.+++ .++..+..+++|++|++++|+++
T Consensus 455 ~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~ 501 (592)
T 3ogk_B 455 LSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFS 501 (592)
T ss_dssp HHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCB
T ss_pred HHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCc
Confidence 33444345556666666665553 22333445555666666666554
No 62
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.94 E-value=4.1e-27 Score=245.09 Aligned_cols=235 Identities=22% Similarity=0.238 Sum_probs=197.3
Q ss_pred CcccEEEcCCCcCcCCCCCcccCCCCCcEEEccCCcccccCCCCccCcCCccEEEcccCc-CccccCccccCCCCCcEec
Q 048006 485 SKLTYVDLSSNLLSGKLPDCWWTFDSLVILNLENNSFSGRIPDSMGFLQNIQTLSLHNNR-LTGELSSSFRNCSQLRLLD 563 (833)
Q Consensus 485 ~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~ 563 (833)
++|++|++++|.+++..+..|..+++|++|++++|.+++..|..|..+++|++|++++|. +....+..|..+++|++|+
T Consensus 32 ~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~ 111 (285)
T 1ozn_A 32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLH 111 (285)
T ss_dssp TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEE
T ss_pred CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEE
Confidence 678889999999888777888999999999999999998888889999999999999997 7777788899999999999
Q ss_pred cCCCccCCCCCcchhhcCCccceEEecCCcccccccccccCCCCCCEEeccCCcCcccCCccccccccccccCCCCcccc
Q 048006 564 LGKNALYGEIPTWMGESLSNLIVLSLKSNKFHGKIPFQLCQLAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIK 643 (833)
Q Consensus 564 L~~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~ 643 (833)
+++|++.+..|..+. .+++|++|++++|++++..+..+..+++|++|++++|++++..+..|..+++|
T Consensus 112 l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L----------- 179 (285)
T 1ozn_A 112 LDRCGLQELGPGLFR-GLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSL----------- 179 (285)
T ss_dssp CTTSCCCCCCTTTTT-TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTC-----------
T ss_pred CCCCcCCEECHhHhh-CCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCcccc-----------
Confidence 999999854455444 68999999999999997777778899999999999999987666667666665
Q ss_pred cceEEeeccCcchhccccCcccEEEccCCcCCCCCchhhhcccCCcEEECCCccccccCCcccCCCCCCCEEeCCCCcCc
Q 048006 644 DKLMLTWKGSEREYRSTLGLVKSLELSNNNLNGAVPEEIMDLVGLVALNLSKNHLTGQISPKIGQLKSLDFLDLSRNQLV 723 (833)
Q Consensus 644 ~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 723 (833)
+.|++++|++++..|..+..+++|++|++++|++++..+..+..+++|+.|++++|++.
T Consensus 180 ---------------------~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 238 (285)
T 1ozn_A 180 ---------------------DRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV 238 (285)
T ss_dssp ---------------------CEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred ---------------------CEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCcc
Confidence 89999999999888999999999999999999999877777999999999999999998
Q ss_pred ccCCccccCCCCCCEEECcCCcCccCCCCc
Q 048006 724 GGIPSSLSQLSGLSVMDLSYNNLSGKIPTV 753 (833)
Q Consensus 724 ~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~ 753 (833)
...+.. .-...++.++.+.+.+.|..|..
T Consensus 239 c~~~~~-~~~~~l~~~~~~~~~~~c~~p~~ 267 (285)
T 1ozn_A 239 CDCRAR-PLWAWLQKFRGSSSEVPCSLPQR 267 (285)
T ss_dssp CSGGGH-HHHHHHHHCCSEECCCBEEESGG
T ss_pred CCCCcH-HHHHHHHhcccccCccccCCchH
Confidence 654321 11133555667889999988864
No 63
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.94 E-value=8.5e-28 Score=253.40 Aligned_cols=203 Identities=24% Similarity=0.240 Sum_probs=112.9
Q ss_pred CCCCCcEEEccCCcccccCCCCc--cCcCCccEEEcccCcCccccCccccCC-----CCCcEeccCCCccCCCCCcchhh
Q 048006 507 TFDSLVILNLENNSFSGRIPDSM--GFLQNIQTLSLHNNRLTGELSSSFRNC-----SQLRLLDLGKNALYGEIPTWMGE 579 (833)
Q Consensus 507 ~l~~L~~L~Ls~N~l~~~~~~~~--~~l~~L~~L~L~~n~l~~~~~~~~~~l-----~~L~~L~L~~n~l~~~~p~~~~~ 579 (833)
.+++|++|++++|.+++.+|..+ ..+++|++|++++|++++. |..+..+ ++|++|++++|++.+..|..+.
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~- 170 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVR- 170 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCC-
T ss_pred CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhc-
Confidence 35555555555555555555443 4555555555555555544 4444444 5555555555555533333333
Q ss_pred cCCccceEEecCCccccc--ccccc--cCCCCCCEEeccCCcCccc--CC-ccccccccccccCCCCcccccceEEeecc
Q 048006 580 SLSNLIVLSLKSNKFHGK--IPFQL--CQLAFLQVLDLSLNNISGK--IP-KCFNNFTAMTQERSSDPTIKDKLMLTWKG 652 (833)
Q Consensus 580 ~l~~L~~L~L~~N~l~~~--~~~~l--~~l~~L~~L~Ls~N~l~~~--~p-~~~~~l~~L~~l~~~~~~~~~~~~~~~~~ 652 (833)
.+++|++|++++|++.+. .+..+ ..+++|++|++++|++++. ++ ..+.
T Consensus 171 ~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~------------------------- 225 (312)
T 1wwl_A 171 VFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAA------------------------- 225 (312)
T ss_dssp CCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHH-------------------------
T ss_pred cCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHh-------------------------
Confidence 455555555555555433 12222 5556666666666665521 11 1111
Q ss_pred CcchhccccCcccEEEccCCcCCCCCc-hhhhcccCCcEEECCCccccccCCcccCCCCCCCEEeCCCCcCcccCCcccc
Q 048006 653 SEREYRSTLGLVKSLELSNNNLNGAVP-EEIMDLVGLVALNLSKNHLTGQISPKIGQLKSLDFLDLSRNQLVGGIPSSLS 731 (833)
Q Consensus 653 ~~~~~~~~~~~L~~L~Ls~n~l~~~~p-~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~ 731 (833)
.+++|+.|++++|++++.+| ..+..+++|++|+|++|+++ .+|..+. ++|++|||++|++++. |. +.
T Consensus 226 -------~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~ 293 (312)
T 1wwl_A 226 -------ARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PD 293 (312)
T ss_dssp -------TTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TT
T ss_pred -------cCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-Hh
Confidence 22334666677776666553 34455667777777777776 5666555 6777777777777755 44 66
Q ss_pred CCCCCCEEECcCCcCcc
Q 048006 732 QLSGLSVMDLSYNNLSG 748 (833)
Q Consensus 732 ~l~~L~~L~ls~N~l~g 748 (833)
.+++|++|++++|++++
T Consensus 294 ~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 294 ELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp TSCEEEEEECTTCTTTC
T ss_pred hCCCCCEEeccCCCCCC
Confidence 77777777777777664
No 64
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.93 E-value=1.1e-25 Score=256.35 Aligned_cols=293 Identities=22% Similarity=0.213 Sum_probs=174.2
Q ss_pred CCCCCCCCCCCCCCCCcccceEec------CCCCcEEEEECCCCCCCCCCcceecCccccCCCCCCEEeCCCCCCCCCCc
Q 048006 31 GVLSSWGPEDEKRDCCKWTGLRCS------NKTNHVILLDLQPIDFDSFPLRGTISPALLKLHDLRHLNLSFNDFSGSPI 104 (833)
Q Consensus 31 ~~~~~w~~~~~~~~~c~w~gv~c~------~~~~~v~~l~L~~~~~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~ 104 (833)
...+.|. .+.+||.|+|..|. -....++.|++++ +.++ .+|..+. ++|++|+|++|.++. +
T Consensus 10 ~~w~~W~---~~~~~~~~~~r~~~~~~~~~c~~~~l~~L~ls~-----n~L~-~lp~~l~--~~L~~L~L~~N~l~~--l 76 (622)
T 3g06_A 10 AVWSAWR---RAAPAEESRGRAAVVQKMRACLNNGNAVLNVGE-----SGLT-TLPDCLP--AHITTLVIPDNNLTS--L 76 (622)
T ss_dssp CHHHHHH---HTCCGGGHHHHHHHHHHHHHHHHHCCCEEECCS-----SCCS-CCCSCCC--TTCSEEEECSCCCSC--C
T ss_pred HHHHHHH---hcCCcchhccccccCcccccccCCCCcEEEecC-----CCcC-ccChhhC--CCCcEEEecCCCCCC--C
Confidence 3455676 46789999775321 0123466777777 4554 5555554 677777777777773 5
Q ss_pred cccccCCCCCCEEEccCCCCCCCCCcccCCccccceecccCccCCCCCCcccccCCCCCcEEecCCCCCCCCchhHHhhc
Q 048006 105 PEFIGSLSKLRYLDLFGTVFAGPIPPQLGNLSRLQHLDLGSNYLFSTGNLDWLSHLSYLRYLNLDESNLANSSDWFQVIG 184 (833)
Q Consensus 105 p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~l~ 184 (833)
|. .+++|++|+|++|.++ .+|. .+++|++|++++|.+..... .+++|++|++++|.++.++.
T Consensus 77 p~---~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~Ls~N~l~~l~~-----~l~~L~~L~L~~N~l~~lp~------ 138 (622)
T 3g06_A 77 PA---LPPELRTLEVSGNQLT-SLPV---LPPGLLELSIFSNPLTHLPA-----LPSGLCKLWIFGNQLTSLPV------ 138 (622)
T ss_dssp CC---CCTTCCEEEECSCCCS-CCCC---CCTTCCEEEECSCCCCCCCC-----CCTTCCEEECCSSCCSCCCC------
T ss_pred CC---cCCCCCEEEcCCCcCC-cCCC---CCCCCCEEECcCCcCCCCCC-----CCCCcCEEECCCCCCCcCCC------
Confidence 54 4677777777777776 3554 56777777777777653211 45666666666666665422
Q ss_pred CCCCCCEEEccCCCCCCCCCccccccccCCCCCEEEccCCcCCCCCCCcccccccCCcEEEccCccccccccccccCCCC
Q 048006 185 KLHSLKTLSLHSCYLPPVIPLSLNHLNSSTSLETLVLSDNNLTSSIYPWLPNISSIFISIDLGFNQLQGSIPESFQHMVY 264 (833)
Q Consensus 185 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~p~~~~~l~~ 264 (833)
.+++|++|++++|.+.+. |. .+++|+.|++++|.+++ +| ..+++ |+.|++++|.+++ +|. .+++
T Consensus 139 ~l~~L~~L~Ls~N~l~~l-~~------~~~~L~~L~L~~N~l~~-l~---~~~~~-L~~L~Ls~N~l~~-l~~---~~~~ 202 (622)
T 3g06_A 139 LPPGLQELSVSDNQLASL-PA------LPSELCKLWAYNNQLTS-LP---MLPSG-LQELSVSDNQLAS-LPT---LPSE 202 (622)
T ss_dssp CCTTCCEEECCSSCCSCC-CC------CCTTCCEEECCSSCCSC-CC---CCCTT-CCEEECCSSCCSC-CCC---CCTT
T ss_pred CCCCCCEEECcCCcCCCc-CC------ccCCCCEEECCCCCCCC-Cc---ccCCC-CcEEECCCCCCCC-CCC---ccch
Confidence 235666666666655542 21 11455555555555553 22 11222 4555555555543 222 1244
Q ss_pred CcEEECcCCcccccccccccCCCCCcEEEccCCCCCchhhHHHhhcCCccccCCccEEEcccccccccChhhhcCCCCCC
Q 048006 265 LEHLRLSFNELEGGIPKFFGNMCSLITLNLSNNKLSGQLSEIIQNLSSGCLENSLKSLYLENSLTGVISESFFSNISNLK 344 (833)
Q Consensus 265 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~~~~~~L~~L~L~~~~~~~i~~~~~~~l~~L~ 344 (833)
|+.|++++|.++. +|.. ++ +|+.|++++|.+..+| ..+++|+
T Consensus 203 L~~L~L~~N~l~~-l~~~---~~------------------------------~L~~L~Ls~N~L~~lp----~~l~~L~ 244 (622)
T 3g06_A 203 LYKLWAYNNRLTS-LPAL---PS------------------------------GLKELIVSGNRLTSLP----VLPSELK 244 (622)
T ss_dssp CCEEECCSSCCSS-CCCC---CT------------------------------TCCEEECCSSCCSCCC----CCCTTCC
T ss_pred hhEEECcCCcccc-cCCC---CC------------------------------CCCEEEccCCccCcCC----CCCCcCc
Confidence 4555555554442 2221 23 4555555444444444 2456777
Q ss_pred EEECcCCccccccCCCccCCccccEEEccCccCCCCCChhhcccccccEEeecCCccccccchhHHhhc
Q 048006 345 ELHLANNPLVLKLSHDWVPPFQLIIISLSSCKIGPHFPKWLQTQNQIELLDISNTGISDTIPDWFWNLS 413 (833)
Q Consensus 345 ~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~ 413 (833)
+|++++|.+.... . .+++|+.|++++|.++ .+|..+..+++|+.|+|++|.+++..|..+..+.
T Consensus 245 ~L~Ls~N~L~~lp-~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~L~ 308 (622)
T 3g06_A 245 ELMVSGNRLTSLP-M---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREIT 308 (622)
T ss_dssp EEECCSSCCSCCC-C---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHHHHH
T ss_pred EEECCCCCCCcCC-c---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHHhcc
Confidence 7777777776432 2 4567888888888887 6688899999999999999999988888776653
No 65
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.93 E-value=1.2e-26 Score=259.47 Aligned_cols=244 Identities=23% Similarity=0.243 Sum_probs=197.0
Q ss_pred CCcccEEEcCCCcCcCCCCCcccCCCCCcEEEccCCcccccCCCCccCcCCccEEEcccCcCccccCccccCCCCCcEec
Q 048006 484 GSKLTYVDLSSNLLSGKLPDCWWTFDSLVILNLENNSFSGRIPDSMGFLQNIQTLSLHNNRLTGELSSSFRNCSQLRLLD 563 (833)
Q Consensus 484 ~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 563 (833)
+++|++|++++|.+++..|..|..+++|++|+|++|.+++..| +..+++|++|++++|.+++..+ .++|++|+
T Consensus 33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~-----~~~L~~L~ 105 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV-----GPSIETLH 105 (487)
T ss_dssp GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE-----CTTCCEEE
T ss_pred CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC-----CCCcCEEE
Confidence 3689999999999998888899999999999999999997766 8899999999999999986543 38999999
Q ss_pred cCCCccCCCCCcchhhcCCccceEEecCCcccccccccccCCCCCCEEeccCCcCcccCCcccc-ccccccccCCCCccc
Q 048006 564 LGKNALYGEIPTWMGESLSNLIVLSLKSNKFHGKIPFQLCQLAFLQVLDLSLNNISGKIPKCFN-NFTAMTQERSSDPTI 642 (833)
Q Consensus 564 L~~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~-~l~~L~~l~~~~~~~ 642 (833)
+++|.+.+. +.. .+++|++|++++|.+++..|..+..+++|+.|+|++|.+++..|..+. .++.|
T Consensus 106 L~~N~l~~~-~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L---------- 171 (487)
T 3oja_A 106 AANNNISRV-SCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTL---------- 171 (487)
T ss_dssp CCSSCCCCE-EEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTC----------
T ss_pred CcCCcCCCC-Ccc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcc----------
Confidence 999999844 332 367899999999999988888899999999999999999987777664 45555
Q ss_pred ccceEEeeccCcchhccccCcccEEEccCCcCCCCCchhhhcccCCcEEECCCccccccCCcccCCCCCCCEEeCCCCcC
Q 048006 643 KDKLMLTWKGSEREYRSTLGLVKSLELSNNNLNGAVPEEIMDLVGLVALNLSKNHLTGQISPKIGQLKSLDFLDLSRNQL 722 (833)
Q Consensus 643 ~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l 722 (833)
+.|+|++|.+++. |. +..+++|++|+|++|.+++. |..+..+++|+.|+|++|.+
T Consensus 172 ----------------------~~L~Ls~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~L~~L~Ls~N~l 226 (487)
T 3oja_A 172 ----------------------EHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKL 226 (487)
T ss_dssp ----------------------CEEECTTSCCCEE-EC-CCCCTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCC
T ss_pred ----------------------cEEecCCCccccc-cc-cccCCCCCEEECCCCCCCCC-CHhHcCCCCccEEEecCCcC
Confidence 8999999999865 32 44689999999999999965 45588999999999999999
Q ss_pred cccCCccccCCCCCCEEECcCCcCc-cCCCCc-cccCcccccccc-------CCCCCCCCC
Q 048006 723 VGGIPSSLSQLSGLSVMDLSYNNLS-GKIPTV-TQLQSFNDTVYA-------GNPELCGLP 774 (833)
Q Consensus 723 ~~~~p~~l~~l~~L~~L~ls~N~l~-g~ip~~-~~~~~l~~~~~~-------gn~~lc~~~ 774 (833)
++ +|..+..+++|+.|++++|++. +.+|.. ..+..+..+... +|++.|.++
T Consensus 227 ~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~c~~~ 286 (487)
T 3oja_A 227 VL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVP 286 (487)
T ss_dssp CE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHHHHHHHTSSSSCCCSST
T ss_pred cc-cchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEeccccccccCCCcccccCC
Confidence 95 6778889999999999999998 333322 222222222222 677877664
No 66
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.93 E-value=4.6e-27 Score=247.81 Aligned_cols=245 Identities=27% Similarity=0.336 Sum_probs=202.8
Q ss_pred CCcccEEEcCCCcCcCCCCCcccCCCCCcEEEccCCccc-ccCCCCcc-------CcCCccEEEcccCcCccccCccc--
Q 048006 484 GSKLTYVDLSSNLLSGKLPDCWWTFDSLVILNLENNSFS-GRIPDSMG-------FLQNIQTLSLHNNRLTGELSSSF-- 553 (833)
Q Consensus 484 ~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~-------~l~~L~~L~L~~n~l~~~~~~~~-- 553 (833)
.++|+++++++|.+ .+|..+... |+.|++++|.+. ..+|..+. ++++|++|++++|++++.+|..+
T Consensus 42 ~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 117 (312)
T 1wwl_A 42 GRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLE 117 (312)
T ss_dssp EEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSS
T ss_pred CCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHH
Confidence 36788889999998 567655554 899999999984 44555444 68999999999999999888876
Q ss_pred cCCCCCcEeccCCCccCCCCCcchhhcC-----CccceEEecCCcccccccccccCCCCCCEEeccCCcCcccC--Cccc
Q 048006 554 RNCSQLRLLDLGKNALYGEIPTWMGESL-----SNLIVLSLKSNKFHGKIPFQLCQLAFLQVLDLSLNNISGKI--PKCF 626 (833)
Q Consensus 554 ~~l~~L~~L~L~~n~l~~~~p~~~~~~l-----~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~--p~~~ 626 (833)
..+++|++|++++|++++. |..+. .+ ++|++|++++|++.+..|..+..+++|++|++++|++.+.+ |..+
T Consensus 118 ~~l~~L~~L~Ls~N~l~~~-~~~~~-~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 195 (312)
T 1wwl_A 118 ATGPDLNILNLRNVSWATR-DAWLA-ELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISAL 195 (312)
T ss_dssp CCSCCCSEEEEESCBCSSS-SSHHH-HHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHS
T ss_pred hcCCCccEEEccCCCCcch-hHHHH-HHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHH
Confidence 8999999999999999955 76665 35 89999999999999888899999999999999999987642 2222
Q ss_pred --cccccccccCCCCcccccceEEeeccCcchhccccCcccEEEccCCcCCC--CCc-hhhhcccCCcEEECCCcccccc
Q 048006 627 --NNFTAMTQERSSDPTIKDKLMLTWKGSEREYRSTLGLVKSLELSNNNLNG--AVP-EEIMDLVGLVALNLSKNHLTGQ 701 (833)
Q Consensus 627 --~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~--~~p-~~l~~l~~L~~L~Ls~N~l~~~ 701 (833)
..++ +|++|++++|++++ .++ ..+..+++|++|+|++|++++.
T Consensus 196 ~~~~l~--------------------------------~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 243 (312)
T 1wwl_A 196 CPLKFP--------------------------------TLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDA 243 (312)
T ss_dssp CTTSCT--------------------------------TCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSS
T ss_pred HhccCC--------------------------------CCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcc
Confidence 4444 45999999999983 222 3446789999999999999988
Q ss_pred CC-cccCCCCCCCEEeCCCCcCcccCCccccCCCCCCEEECcCCcCccCCCCccccCccccccccCCCCC
Q 048006 702 IS-PKIGQLKSLDFLDLSRNQLVGGIPSSLSQLSGLSVMDLSYNNLSGKIPTVTQLQSFNDTVYAGNPEL 770 (833)
Q Consensus 702 ~p-~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~l~~~~~~gn~~l 770 (833)
+| ..+..+++|++|+|++|+++ .+|..+. ++|++||+++|++++. |....+..+..+++.+|+..
T Consensus 244 ~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~~~~l~~L~~L~L~~N~l~ 309 (312)
T 1wwl_A 244 AGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PSPDELPQVGNLSLKGNPFL 309 (312)
T ss_dssp CCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CCTTTSCEEEEEECTTCTTT
T ss_pred cchhhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hhHhhCCCCCEEeccCCCCC
Confidence 75 56777899999999999999 7788776 8999999999999987 66777788888889999763
No 67
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.93 E-value=5.4e-27 Score=247.85 Aligned_cols=221 Identities=24% Similarity=0.240 Sum_probs=142.4
Q ss_pred CcccEEEcCCCcCcCCCCCcccCCCCCcEEEccCCcccccCCCCccCcCCccEEEcccCcCccccCccccCCCCCcEecc
Q 048006 485 SKLTYVDLSSNLLSGKLPDCWWTFDSLVILNLENNSFSGRIPDSMGFLQNIQTLSLHNNRLTGELSSSFRNCSQLRLLDL 564 (833)
Q Consensus 485 ~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 564 (833)
++|++|++++|.+++..+ +..+++|++|++++|.+++.. ..++|++|++++|++++..+.. +++|++|++
T Consensus 58 ~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l~-----~~~~L~~L~l~~n~l~~~~~~~---~~~L~~L~l 127 (317)
T 3o53_A 58 TKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGPSIETLHAANNNISRVSCSR---GQGKKNIYL 127 (317)
T ss_dssp TTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEEE-----ECTTCCEEECCSSCCSEEEECC---CSSCEEEEC
T ss_pred CcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCcccccc-----CCCCcCEEECCCCccCCcCccc---cCCCCEEEC
Confidence 455556666665554433 556666666666666666432 2356677777777666554432 456777777
Q ss_pred CCCccCCCCCcchhhcCCccceEEecCCccccccccccc-CCCCCCEEeccCCcCcccCCccccccccccccCCCCcccc
Q 048006 565 GKNALYGEIPTWMGESLSNLIVLSLKSNKFHGKIPFQLC-QLAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIK 643 (833)
Q Consensus 565 ~~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~~~~l~-~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~ 643 (833)
++|++++..|..+. .+++|++|++++|.+++..+..+. .+++|++|++++|.+++. |. ...
T Consensus 128 ~~N~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~-~~~--------------- 189 (317)
T 3o53_A 128 ANNKITMLRDLDEG-CRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KG-QVV--------------- 189 (317)
T ss_dssp CSSCCCSGGGBCTG-GGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-EC-CCC---------------
T ss_pred CCCCCCCccchhhh-ccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc-cc-ccc---------------
Confidence 77777633333333 567777777777777765555553 567777777777777643 11 111
Q ss_pred cceEEeeccCcchhccccCcccEEEccCCcCCCCCchhhhcccCCcEEECCCccccccCCcccCCCCCCCEEeCCCCcCc
Q 048006 644 DKLMLTWKGSEREYRSTLGLVKSLELSNNNLNGAVPEEIMDLVGLVALNLSKNHLTGQISPKIGQLKSLDFLDLSRNQLV 723 (833)
Q Consensus 644 ~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 723 (833)
+++|+.|++++|++++ +|..+..+++|++|+|++|+++ .+|..+..+++|+.|++++|++.
T Consensus 190 -----------------l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~ 250 (317)
T 3o53_A 190 -----------------FAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFH 250 (317)
T ss_dssp -----------------CTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCB
T ss_pred -----------------cccCCEEECCCCcCCc-chhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCcc
Confidence 2344777888887774 4445777888888888888887 46777777888888888888887
Q ss_pred -ccCCccccCCCCCCEEECc-CCcCccCCCC
Q 048006 724 -GGIPSSLSQLSGLSVMDLS-YNNLSGKIPT 752 (833)
Q Consensus 724 -~~~p~~l~~l~~L~~L~ls-~N~l~g~ip~ 752 (833)
+.+|..+..++.|+.++++ .+.+.|..|.
T Consensus 251 ~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~~ 281 (317)
T 3o53_A 251 CGTLRDFFSKNQRVQTVAKQTVKKLTGQNEE 281 (317)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHSSSSC
T ss_pred CcCHHHHHhccccceEEECCCchhccCCchh
Confidence 6677777777778888777 3355555443
No 68
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.93 E-value=6.9e-25 Score=227.08 Aligned_cols=229 Identities=22% Similarity=0.188 Sum_probs=182.6
Q ss_pred EEEcCCCcCcCCCCCcccCCCCCcEEEccCCcccccCCCCccCcCCccEEEcccCcCccccCccccCCCCCcEeccCCCc
Q 048006 489 YVDLSSNLLSGKLPDCWWTFDSLVILNLENNSFSGRIPDSMGFLQNIQTLSLHNNRLTGELSSSFRNCSQLRLLDLGKNA 568 (833)
Q Consensus 489 ~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 568 (833)
.++..+..++ .+|..+. ++|++|++++|.+++..+..|..+++|++|++++|++++..+..|..+++|++|++++|+
T Consensus 11 ~~~c~~~~l~-~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 87 (276)
T 2z62_A 11 TYQCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87 (276)
T ss_dssp EEECTTSCCS-SCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred eEEecCCCcc-ccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCc
Confidence 3455555555 3454443 468888888888887777778888888888888888887777788888888888888888
Q ss_pred cCCCCCcchhhcCCccceEEecCCcccccccccccCCCCCCEEeccCCcCccc-CCccccccccccccCCCCcccccceE
Q 048006 569 LYGEIPTWMGESLSNLIVLSLKSNKFHGKIPFQLCQLAFLQVLDLSLNNISGK-IPKCFNNFTAMTQERSSDPTIKDKLM 647 (833)
Q Consensus 569 l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~l~~~~~~~~~~~~ 647 (833)
+.+..+..+. .+++|++|++++|.+.+..+..+..+++|++|++++|++.+. +|..|.++++|
T Consensus 88 l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L--------------- 151 (276)
T 2z62_A 88 IQSLALGAFS-GLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNL--------------- 151 (276)
T ss_dssp CCEECTTTTT-TCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTC---------------
T ss_pred cCccChhhhc-CCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCC---------------
Confidence 8744444444 688888888888888876666788889999999999998763 57777776666
Q ss_pred EeeccCcchhccccCcccEEEccCCcCCCCCchhhhcccCCc----EEECCCccccccCCcccCCCCCCCEEeCCCCcCc
Q 048006 648 LTWKGSEREYRSTLGLVKSLELSNNNLNGAVPEEIMDLVGLV----ALNLSKNHLTGQISPKIGQLKSLDFLDLSRNQLV 723 (833)
Q Consensus 648 ~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~----~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 723 (833)
+.|++++|++++..+..+..+++|+ +|++++|.+++..+..+. ..+|+.|+|++|+++
T Consensus 152 -----------------~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~-~~~L~~L~L~~n~l~ 213 (276)
T 2z62_A 152 -----------------EHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK-EIRLKELALDTNQLK 213 (276)
T ss_dssp -----------------CEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSC-SCCEEEEECCSSCCS
T ss_pred -----------------CEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccC-CCcccEEECCCCcee
Confidence 8899999999887778888877777 899999999976665555 458999999999999
Q ss_pred ccCCccccCCCCCCEEECcCCcCccCCCCcc
Q 048006 724 GGIPSSLSQLSGLSVMDLSYNNLSGKIPTVT 754 (833)
Q Consensus 724 ~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~~ 754 (833)
+..+..+..+++|+.|++++|+++|.+|...
T Consensus 214 ~~~~~~~~~l~~L~~L~l~~N~~~c~c~~l~ 244 (276)
T 2z62_A 214 SVPDGIFDRLTSLQKIWLHTNPWDCSCPRID 244 (276)
T ss_dssp CCCTTTTTTCCSCCEEECCSSCBCCCTTTTH
T ss_pred ecCHhHhcccccccEEEccCCcccccCCchH
Confidence 8877788999999999999999999998653
No 69
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.92 E-value=5.7e-26 Score=239.98 Aligned_cols=242 Identities=22% Similarity=0.233 Sum_probs=197.0
Q ss_pred CceeecCCCcccccccccccccCCcccEEEcCCCcCcCCCCCcccCCCCCcEEEccCCcccccCCCCccCcCCccEEEcc
Q 048006 462 SSFLNLSKNRFSGSISFLCSISGSKLTYVDLSSNLLSGKLPDCWWTFDSLVILNLENNSFSGRIPDSMGFLQNIQTLSLH 541 (833)
Q Consensus 462 L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~ 541 (833)
++..+++.+.+...+..... .+++|++|++++|.+++..|..|..+++|++|++++|.+++..+ +..+++|++|+++
T Consensus 12 l~i~~ls~~~l~~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls 88 (317)
T 3o53_A 12 YKIEKVTDSSLKQALASLRQ-SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLN 88 (317)
T ss_dssp EEEESCCTTTHHHHHHHHHT-TGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECC
T ss_pred eeEeeccccchhhhHHHHhc-cCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECc
Confidence 45566777766544433322 25789999999999998877889999999999999999987665 8889999999999
Q ss_pred cCcCccccCccccCCCCCcEeccCCCccCCCCCcchhhcCCccceEEecCCcccccccccccCCCCCCEEeccCCcCccc
Q 048006 542 NNRLTGELSSSFRNCSQLRLLDLGKNALYGEIPTWMGESLSNLIVLSLKSNKFHGKIPFQLCQLAFLQVLDLSLNNISGK 621 (833)
Q Consensus 542 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~ 621 (833)
+|++++.. ..++|++|++++|++.+ ++.. .+++|++|++++|++++..+..+..+++|++|++++|.+.+.
T Consensus 89 ~n~l~~l~-----~~~~L~~L~l~~n~l~~-~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 159 (317)
T 3o53_A 89 NNYVQELL-----VGPSIETLHAANNNISR-VSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTV 159 (317)
T ss_dssp SSEEEEEE-----ECTTCCEEECCSSCCSE-EEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEE
T ss_pred CCcccccc-----CCCCcCEEECCCCccCC-cCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcc
Confidence 99998543 34899999999999984 4432 367899999999999988788888999999999999999876
Q ss_pred CCcccc-ccccccccCCCCcccccceEEeeccCcchhccccCcccEEEccCCcCCCCCchhhhcccCCcEEECCCccccc
Q 048006 622 IPKCFN-NFTAMTQERSSDPTIKDKLMLTWKGSEREYRSTLGLVKSLELSNNNLNGAVPEEIMDLVGLVALNLSKNHLTG 700 (833)
Q Consensus 622 ~p~~~~-~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 700 (833)
.|..+. .+++ |+.|++++|++++. +. ...+++|++|+|++|++++
T Consensus 160 ~~~~~~~~l~~--------------------------------L~~L~L~~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~~ 205 (317)
T 3o53_A 160 NFAELAASSDT--------------------------------LEHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLAF 205 (317)
T ss_dssp EGGGGGGGTTT--------------------------------CCEEECTTSCCCEE-EC-CCCCTTCCEEECCSSCCCE
T ss_pred cHHHHhhccCc--------------------------------CCEEECCCCcCccc-cc-ccccccCCEEECCCCcCCc
Confidence 665543 3444 49999999999854 33 3458999999999999995
Q ss_pred cCCcccCCCCCCCEEeCCCCcCcccCCccccCCCCCCEEECcCCcCc-cCCC
Q 048006 701 QISPKIGQLKSLDFLDLSRNQLVGGIPSSLSQLSGLSVMDLSYNNLS-GKIP 751 (833)
Q Consensus 701 ~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~-g~ip 751 (833)
+|..+..+++|+.|+|++|+++ .+|..+..+++|+.|++++|++. +.+|
T Consensus 206 -l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~ 255 (317)
T 3o53_A 206 -MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLR 255 (317)
T ss_dssp -ECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHH
T ss_pred -chhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHH
Confidence 4556999999999999999999 57888999999999999999998 4444
No 70
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.92 E-value=5.2e-24 Score=242.57 Aligned_cols=262 Identities=26% Similarity=0.285 Sum_probs=183.3
Q ss_pred ccEEEcccccccccCCccccccCCCCCceecccCcccccCCCCCCCCceeecCCCcccccccccccccCCcccEEEcCCC
Q 048006 416 FSFLDLASNQIKGKLPNLSSRFGTSNPGIDISSNHFEGLIPPLPSNSSFLNLSKNRFSGSISFLCSISGSKLTYVDLSSN 495 (833)
Q Consensus 416 L~~L~L~~n~l~~~~p~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~ls~n 495 (833)
++.|++++|.++ .+|... .++++.|++++|.++. +|..+++|+.|++++|++++... .+++|++|++++|
T Consensus 42 l~~L~ls~n~L~-~lp~~l---~~~L~~L~L~~N~l~~-lp~~l~~L~~L~Ls~N~l~~lp~-----~l~~L~~L~Ls~N 111 (622)
T 3g06_A 42 NAVLNVGESGLT-TLPDCL---PAHITTLVIPDNNLTS-LPALPPELRTLEVSGNQLTSLPV-----LPPGLLELSIFSN 111 (622)
T ss_dssp CCEEECCSSCCS-CCCSCC---CTTCSEEEECSCCCSC-CCCCCTTCCEEEECSCCCSCCCC-----CCTTCCEEEECSC
T ss_pred CcEEEecCCCcC-ccChhh---CCCCcEEEecCCCCCC-CCCcCCCCCEEEcCCCcCCcCCC-----CCCCCCEEECcCC
Confidence 455555555554 233211 1345555555555543 23345667777777776664222 2477888888888
Q ss_pred cCcCCCCCcccCCCCCcEEEccCCcccccCCCCccCcCCccEEEcccCcCccccCccccCCCCCcEeccCCCccCCCCCc
Q 048006 496 LLSGKLPDCWWTFDSLVILNLENNSFSGRIPDSMGFLQNIQTLSLHNNRLTGELSSSFRNCSQLRLLDLGKNALYGEIPT 575 (833)
Q Consensus 496 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~ 575 (833)
.+++. |. .+++|+.|++++|++++ +|.. +++|++|++++|++++ +|. ..++|+.|++++|+++ .+|.
T Consensus 112 ~l~~l-~~---~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~-~l~~ 178 (622)
T 3g06_A 112 PLTHL-PA---LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLAS-LPA---LPSELCKLWAYNNQLT-SLPM 178 (622)
T ss_dssp CCCCC-CC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCS-CCCC
T ss_pred cCCCC-CC---CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCCC-cCC---ccCCCCEEECCCCCCC-CCcc
Confidence 88753 33 46778888888888875 4443 4778888888888875 333 3467888888888887 5762
Q ss_pred chhhcCCccceEEecCCcccccccccccCCCCCCEEeccCCcCcccCCccccccccccccCCCCcccccceEEeeccCcc
Q 048006 576 WMGESLSNLIVLSLKSNKFHGKIPFQLCQLAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKDKLMLTWKGSER 655 (833)
Q Consensus 576 ~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~ 655 (833)
.+++|+.|++++|.+++ +|.. +++|+.|++++|.++ .+|..
T Consensus 179 ----~~~~L~~L~Ls~N~l~~-l~~~---~~~L~~L~L~~N~l~-~l~~~------------------------------ 219 (622)
T 3g06_A 179 ----LPSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLT-SLPAL------------------------------ 219 (622)
T ss_dssp ----CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-SCCCC------------------------------
T ss_pred ----cCCCCcEEECCCCCCCC-CCCc---cchhhEEECcCCccc-ccCCC------------------------------
Confidence 46788888888888874 4432 467888888888886 33322
Q ss_pred hhccccCcccEEEccCCcCCCCCchhhhcccCCcEEECCCccccccCCcccCCCCCCCEEeCCCCcCcccCCccccCCCC
Q 048006 656 EYRSTLGLVKSLELSNNNLNGAVPEEIMDLVGLVALNLSKNHLTGQISPKIGQLKSLDFLDLSRNQLVGGIPSSLSQLSG 735 (833)
Q Consensus 656 ~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~ 735 (833)
+++|+.|++++|++++ +| ..+++|+.|+|++|+|+ .+|. .+++|+.|+|++|+|+ .+|..+.++++
T Consensus 220 -----~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~ 285 (622)
T 3g06_A 220 -----PSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSS 285 (622)
T ss_dssp -----CTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCT
T ss_pred -----CCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccc
Confidence 2345889999999985 56 55688999999999998 4565 5688999999999999 77888999999
Q ss_pred CCEEECcCCcCccCCCCc
Q 048006 736 LSVMDLSYNNLSGKIPTV 753 (833)
Q Consensus 736 L~~L~ls~N~l~g~ip~~ 753 (833)
|+.|++++|++++.+|..
T Consensus 286 L~~L~L~~N~l~~~~~~~ 303 (622)
T 3g06_A 286 ETTVNLEGNPLSERTLQA 303 (622)
T ss_dssp TCEEECCSCCCCHHHHHH
T ss_pred cCEEEecCCCCCCcCHHH
Confidence 999999999999877753
No 71
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.92 E-value=2.3e-25 Score=249.09 Aligned_cols=222 Identities=22% Similarity=0.156 Sum_probs=194.2
Q ss_pred cCCCCCcEEEccCCcccccCCCCccCcCCccEEEcccCcCccccCccccCCCCCcEeccCCCccCCCCCcchhhcCCccc
Q 048006 506 WTFDSLVILNLENNSFSGRIPDSMGFLQNIQTLSLHNNRLTGELSSSFRNCSQLRLLDLGKNALYGEIPTWMGESLSNLI 585 (833)
Q Consensus 506 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~ 585 (833)
..+++|++|+|++|.+++..|..|..+++|++|+|++|.+++..| |..+++|++|++++|.++ .+|. .++|+
T Consensus 31 ~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~-~l~~-----~~~L~ 102 (487)
T 3oja_A 31 QSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQ-ELLV-----GPSIE 102 (487)
T ss_dssp TTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEE-EEEE-----CTTCC
T ss_pred ccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCC-CCCC-----CCCcC
Confidence 345589999999999999888899999999999999999998766 899999999999999998 4543 48999
Q ss_pred eEEecCCcccccccccccCCCCCCEEeccCCcCcccCCccccccccccccCCCCcccccceEEeeccCcchhccccCccc
Q 048006 586 VLSLKSNKFHGKIPFQLCQLAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKDKLMLTWKGSEREYRSTLGLVK 665 (833)
Q Consensus 586 ~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 665 (833)
+|++++|.+++..+. .+++|+.|++++|.+++..|..|+.+++| +
T Consensus 103 ~L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L--------------------------------~ 147 (487)
T 3oja_A 103 TLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRV--------------------------------Q 147 (487)
T ss_dssp EEECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSE--------------------------------E
T ss_pred EEECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCC--------------------------------C
Confidence 999999999976654 46889999999999998888888777666 9
Q ss_pred EEEccCCcCCCCCchhhh-cccCCcEEECCCccccccCCcccCCCCCCCEEeCCCCcCcccCCccccCCCCCCEEECcCC
Q 048006 666 SLELSNNNLNGAVPEEIM-DLVGLVALNLSKNHLTGQISPKIGQLKSLDFLDLSRNQLVGGIPSSLSQLSGLSVMDLSYN 744 (833)
Q Consensus 666 ~L~Ls~n~l~~~~p~~l~-~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N 744 (833)
.|+|++|.+++.+|..+. .+++|++|+|++|.+++.. .+..+++|+.|+|++|++++.+| .+..+++|+.|++++|
T Consensus 148 ~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~--~~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N 224 (487)
T 3oja_A 148 YLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVK--GQVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNN 224 (487)
T ss_dssp EEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEE--CCCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTS
T ss_pred EEECCCCCCCCcChHHHhhhCCcccEEecCCCcccccc--ccccCCCCCEEECCCCCCCCCCH-hHcCCCCccEEEecCC
Confidence 999999999998888886 7999999999999999773 34569999999999999997655 5899999999999999
Q ss_pred cCccCCCCccccCccccccccCCCCCCCC
Q 048006 745 NLSGKIPTVTQLQSFNDTVYAGNPELCGL 773 (833)
Q Consensus 745 ~l~g~ip~~~~~~~l~~~~~~gn~~lc~~ 773 (833)
++++.++....+..+..+++.||++.|++
T Consensus 225 ~l~~lp~~l~~l~~L~~L~l~~N~l~c~~ 253 (487)
T 3oja_A 225 KLVLIEKALRFSQNLEHFDLRGNGFHCGT 253 (487)
T ss_dssp CCCEECTTCCCCTTCCEEECTTCCBCHHH
T ss_pred cCcccchhhccCCCCCEEEcCCCCCcCcc
Confidence 99986555566778888899999999875
No 72
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.92 E-value=6.8e-24 Score=218.58 Aligned_cols=186 Identities=27% Similarity=0.312 Sum_probs=132.1
Q ss_pred CccEEEcccCcCccccCccccCCCCCcEeccCCCccCCCCCcchhhcCCccceEEecCCcccccccccccCCCCCCEEec
Q 048006 534 NIQTLSLHNNRLTGELSSSFRNCSQLRLLDLGKNALYGEIPTWMGESLSNLIVLSLKSNKFHGKIPFQLCQLAFLQVLDL 613 (833)
Q Consensus 534 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L 613 (833)
++++|++++|++++..+..|.++++|++|++++|+++ .+|...+..+++|++|++++|.+++..+..+..+++|++|++
T Consensus 38 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 116 (270)
T 2o6q_A 38 DTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRL 116 (270)
T ss_dssp TCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCS-CCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEEC
T ss_pred CCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccC-eeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEEC
Confidence 4455555555555444444555555555555555554 444444334555666666666655544455666677777777
Q ss_pred cCCcCcccCCccccccccccccCCCCcccccceEEeeccCcchhccccCcccEEEccCCcCCCCCchhhhcccCCcEEEC
Q 048006 614 SLNNISGKIPKCFNNFTAMTQERSSDPTIKDKLMLTWKGSEREYRSTLGLVKSLELSNNNLNGAVPEEIMDLVGLVALNL 693 (833)
Q Consensus 614 s~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L 693 (833)
++|++++..+..|..+++| +.|++++|++++..+..|..+++|++|+|
T Consensus 117 ~~n~l~~~~~~~~~~l~~L--------------------------------~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 164 (270)
T 2o6q_A 117 DRNQLKSLPPRVFDSLTKL--------------------------------TYLSLGYNELQSLPKGVFDKLTSLKELRL 164 (270)
T ss_dssp CSSCCCCCCTTTTTTCTTC--------------------------------CEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCccCeeCHHHhCcCcCC--------------------------------CEEECCCCcCCccCHhHccCCcccceeEe
Confidence 7777776666666555555 77888888887666666888899999999
Q ss_pred CCccccccCCcccCCCCCCCEEeCCCCcCcccCCccccCCCCCCEEECcCCcCccCCCC
Q 048006 694 SKNHLTGQISPKIGQLKSLDFLDLSRNQLVGGIPSSLSQLSGLSVMDLSYNNLSGKIPT 752 (833)
Q Consensus 694 s~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~ 752 (833)
++|++++..+..|..+++|+.|+|++|++++..+..+..+++|+.|++++|++.+.++.
T Consensus 165 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~ 223 (270)
T 2o6q_A 165 YNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCNG 223 (270)
T ss_dssp CSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSSSS
T ss_pred cCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCCCcc
Confidence 99999987777899999999999999999987777899999999999999999988764
No 73
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.92 E-value=2.4e-27 Score=274.68 Aligned_cols=111 Identities=14% Similarity=0.077 Sum_probs=53.6
Q ss_pred ccCCCCCcEEEccCCcccccCCCCccC-cCCccEEEcccCcCccccCccc-cCCCCCcEeccCCCccCCCCCcchhhcCC
Q 048006 505 WWTFDSLVILNLENNSFSGRIPDSMGF-LQNIQTLSLHNNRLTGELSSSF-RNCSQLRLLDLGKNALYGEIPTWMGESLS 582 (833)
Q Consensus 505 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~-l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~L~~n~l~~~~p~~~~~~l~ 582 (833)
+..+++|+.|++++ .+++..+..+.. +++|++|++++|.+++.....+ ..+++|++|++++|++++.....+...++
T Consensus 428 ~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~ 506 (594)
T 2p1m_B 428 VEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLE 506 (594)
T ss_dssp HHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGG
T ss_pred HhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCC
Confidence 34455666666654 444332223332 5556666666666554333333 44566666666666654322222333455
Q ss_pred ccceEEecCCcccccccccc-cCCCCCCEEeccCC
Q 048006 583 NLIVLSLKSNKFHGKIPFQL-CQLAFLQVLDLSLN 616 (833)
Q Consensus 583 ~L~~L~L~~N~l~~~~~~~l-~~l~~L~~L~Ls~N 616 (833)
+|++|++++|+++......+ ..++.|+...+..+
T Consensus 507 ~L~~L~l~~~~~~~~~~~~l~~~lp~l~i~~~~~~ 541 (594)
T 2p1m_B 507 TMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDER 541 (594)
T ss_dssp GSSEEEEESSCCBHHHHHHHHHHCTTEEEEEECSS
T ss_pred CCCEEeeeCCCCCHHHHHHHHHhCCCCEEEEecCC
Confidence 66666666665543222222 33455544444443
No 74
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.91 E-value=7.1e-27 Score=270.77 Aligned_cols=31 Identities=3% Similarity=0.023 Sum_probs=17.9
Q ss_pred EEEccCCCCCCCCCcccCCccccceecccCcc
Q 048006 116 YLDLFGTVFAGPIPPQLGNLSRLQHLDLGSNY 147 (833)
Q Consensus 116 ~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~ 147 (833)
.++++.+... ..+..+.++++|++|+++++.
T Consensus 47 ~l~~~~~~~~-~~~~~~~~~~~L~~L~L~~~~ 77 (594)
T 2p1m_B 47 KVFIGNCYAV-SPATVIRRFPKVRSVELKGKP 77 (594)
T ss_dssp EEEESSTTSS-CHHHHHHHCTTCCEEEEECSC
T ss_pred EEeecccccc-CHHHHHhhCCCceEEeccCCC
Confidence 4555554322 122345667778888888765
No 75
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.91 E-value=5.3e-24 Score=220.40 Aligned_cols=225 Identities=25% Similarity=0.276 Sum_probs=191.2
Q ss_pred EEEccCCcccccCCCCccCcCCccEEEcccCcCccccCccccCCCCCcEeccCCCccCCCCCcchhhcCCccceEEecCC
Q 048006 513 ILNLENNSFSGRIPDSMGFLQNIQTLSLHNNRLTGELSSSFRNCSQLRLLDLGKNALYGEIPTWMGESLSNLIVLSLKSN 592 (833)
Q Consensus 513 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~N 592 (833)
..+..+..+. .+|..+. ++|++|++++|++++..+..|.++++|++|++++|++. .++...+..+++|++|++++|
T Consensus 11 ~~~c~~~~l~-~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~L~~n 86 (276)
T 2z62_A 11 TYQCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGN 86 (276)
T ss_dssp EEECTTSCCS-SCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCC-EECTTTTTTCTTCCEEECTTC
T ss_pred eEEecCCCcc-ccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCC-ccCHHHccCCcCCCEEECCCC
Confidence 4556666666 4565443 57999999999999888889999999999999999998 555544447999999999999
Q ss_pred cccccccccccCCCCCCEEeccCCcCcccCCccccccccccccCCCCcccccceEEeeccCcchhccccCcccEEEccCC
Q 048006 593 KFHGKIPFQLCQLAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKDKLMLTWKGSEREYRSTLGLVKSLELSNN 672 (833)
Q Consensus 593 ~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n 672 (833)
.+++..+..+.++++|++|++++|++.+..+..+..+++| ++|++++|
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L--------------------------------~~L~l~~n 134 (276)
T 2z62_A 87 PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTL--------------------------------KELNVAHN 134 (276)
T ss_dssp CCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTC--------------------------------CEEECCSS
T ss_pred ccCccChhhhcCCccccEEECCCCCccccCchhcccCCCC--------------------------------CEEECcCC
Confidence 9998888899999999999999999987766667666665 99999999
Q ss_pred cCCCC-CchhhhcccCCcEEECCCccccccCCcccCCCCCCC----EEeCCCCcCcccCCccccCCCCCCEEECcCCcCc
Q 048006 673 NLNGA-VPEEIMDLVGLVALNLSKNHLTGQISPKIGQLKSLD----FLDLSRNQLVGGIPSSLSQLSGLSVMDLSYNNLS 747 (833)
Q Consensus 673 ~l~~~-~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~----~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~ 747 (833)
++++. +|..+..+++|++|++++|++++..+..+..+++|+ .|++++|++++..+..+.. .+|+.|++++|+++
T Consensus 135 ~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~-~~L~~L~L~~n~l~ 213 (276)
T 2z62_A 135 LIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE-IRLKELALDTNQLK 213 (276)
T ss_dssp CCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCS-CCEEEEECCSSCCS
T ss_pred ccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccCC-CcccEEECCCCcee
Confidence 99874 699999999999999999999988888888777777 9999999999777666654 48999999999999
Q ss_pred cCCCCc-cccCccccccccCCCCCCCCC
Q 048006 748 GKIPTV-TQLQSFNDTVYAGNPELCGLP 774 (833)
Q Consensus 748 g~ip~~-~~~~~l~~~~~~gn~~lc~~~ 774 (833)
+..+.. ..+..+..+.+.+||+.|+|+
T Consensus 214 ~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 241 (276)
T 2z62_A 214 SVPDGIFDRLTSLQKIWLHTNPWDCSCP 241 (276)
T ss_dssp CCCTTTTTTCCSCCEEECCSSCBCCCTT
T ss_pred ecCHhHhcccccccEEEccCCcccccCC
Confidence 776654 567788888999999999986
No 76
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.91 E-value=2.2e-23 Score=216.46 Aligned_cols=207 Identities=23% Similarity=0.248 Sum_probs=157.6
Q ss_pred ccCCCCCcEEEccCCcccccCCCCccCcCCccEEEcccCcCccccCccccCCCCCcEeccCCCccCCCCCcchhhcCCcc
Q 048006 505 WWTFDSLVILNLENNSFSGRIPDSMGFLQNIQTLSLHNNRLTGELSSSFRNCSQLRLLDLGKNALYGEIPTWMGESLSNL 584 (833)
Q Consensus 505 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L 584 (833)
+..+++++++++++|.++ .+|..+. +++++|++++|.+++..+..|..+++|++|++++|.++ .++.. ..+++|
T Consensus 6 ~~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~--~~l~~L 79 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQVD--GTLPVL 79 (290)
T ss_dssp EECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCC-EEECC--SCCTTC
T ss_pred ccccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccC-cccCC--CCCCcC
Confidence 445566666666666666 3343332 56777777777777666667777777777777777776 44433 257778
Q ss_pred ceEEecCCcccccccccccCCCCCCEEeccCCcCcccCCccccccccccccCCCCcccccceEEeeccCcchhccccCcc
Q 048006 585 IVLSLKSNKFHGKIPFQLCQLAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKDKLMLTWKGSEREYRSTLGLV 664 (833)
Q Consensus 585 ~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 664 (833)
++|++++|+++ .+|..+..+++|++|++++|++++..|..|..+++|
T Consensus 80 ~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L-------------------------------- 126 (290)
T 1p9a_G 80 GTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGEL-------------------------------- 126 (290)
T ss_dssp CEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTC--------------------------------
T ss_pred CEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCC--------------------------------
Confidence 88888888777 566677788888888888888887666777766666
Q ss_pred cEEEccCCcCCCCCchhhhcccCCcEEECCCccccccCCcccCCCCCCCEEeCCCCcCcccCCccccCCCCCCEEECcCC
Q 048006 665 KSLELSNNNLNGAVPEEIMDLVGLVALNLSKNHLTGQISPKIGQLKSLDFLDLSRNQLVGGIPSSLSQLSGLSVMDLSYN 744 (833)
Q Consensus 665 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N 744 (833)
+.|+|++|++++..+..|..+++|+.|+|++|++++..+..|..+++|+.|+|++|+++ .+|..+..+++|+.+++++|
T Consensus 127 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~N 205 (290)
T 1p9a_G 127 QELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGN 205 (290)
T ss_dssp CEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSC
T ss_pred CEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCC
Confidence 88888888888777777888999999999999999766667888999999999999998 67888888889999999999
Q ss_pred cCccCCC
Q 048006 745 NLSGKIP 751 (833)
Q Consensus 745 ~l~g~ip 751 (833)
++.+.+.
T Consensus 206 p~~C~c~ 212 (290)
T 1p9a_G 206 PWLCNCE 212 (290)
T ss_dssp CBCCSGG
T ss_pred CccCcCc
Confidence 9987653
No 77
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.90 E-value=2.8e-23 Score=215.66 Aligned_cols=207 Identities=22% Similarity=0.211 Sum_probs=176.0
Q ss_pred ccCcCCccEEEcccCcCccccCccccCCCCCcEeccCCCccCCCCCcchhhcCCccceEEecCCcccccccccccCCCCC
Q 048006 529 MGFLQNIQTLSLHNNRLTGELSSSFRNCSQLRLLDLGKNALYGEIPTWMGESLSNLIVLSLKSNKFHGKIPFQLCQLAFL 608 (833)
Q Consensus 529 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L 608 (833)
++.+++++++++++|.++. +|..+. ++++.|++++|.+.+..|..+. .+++|++|++++|.+++..+. ..+++|
T Consensus 6 ~~~l~~l~~l~~~~~~l~~-ip~~~~--~~l~~L~L~~N~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~--~~l~~L 79 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTA-LPPDLP--KDTTILHLSENLLYTFSLATLM-PYTRLTQLNLDRAELTKLQVD--GTLPVL 79 (290)
T ss_dssp EECSTTCCEEECTTSCCSS-CCSCCC--TTCCEEECTTSCCSEEEGGGGT-TCTTCCEEECTTSCCCEEECC--SCCTTC
T ss_pred ccccCCccEEECCCCCCCc-CCCCCC--CCCCEEEcCCCcCCccCHHHhh-cCCCCCEEECCCCccCcccCC--CCCCcC
Confidence 5678899999999999994 555443 6899999999999854455555 799999999999999865432 789999
Q ss_pred CEEeccCCcCcccCCccccccccccccCCCCcccccceEEeeccCcchhccccCcccEEEccCCcCCCCCchhhhcccCC
Q 048006 609 QVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKDKLMLTWKGSEREYRSTLGLVKSLELSNNNLNGAVPEEIMDLVGL 688 (833)
Q Consensus 609 ~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L 688 (833)
++|++++|++. .+|..+..+++| +.|++++|++++..|..|..+++|
T Consensus 80 ~~L~Ls~N~l~-~l~~~~~~l~~L--------------------------------~~L~l~~N~l~~l~~~~~~~l~~L 126 (290)
T 1p9a_G 80 GTLDLSHNQLQ-SLPLLGQTLPAL--------------------------------TVLDVSFNRLTSLPLGALRGLGEL 126 (290)
T ss_dssp CEEECCSSCCS-SCCCCTTTCTTC--------------------------------CEEECCSSCCCCCCSSTTTTCTTC
T ss_pred CEEECCCCcCC-cCchhhccCCCC--------------------------------CEEECCCCcCcccCHHHHcCCCCC
Confidence 99999999997 667666666555 999999999998878889999999
Q ss_pred cEEECCCccccccCCcccCCCCCCCEEeCCCCcCcccCCccccCCCCCCEEECcCCcCccCCCCccccCccccccccCCC
Q 048006 689 VALNLSKNHLTGQISPKIGQLKSLDFLDLSRNQLVGGIPSSLSQLSGLSVMDLSYNNLSGKIPTVTQLQSFNDTVYAGNP 768 (833)
Q Consensus 689 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~l~~~~~~gn~ 768 (833)
++|+|++|++++..+..|..+++|+.|+|++|++++..+..|..+++|++|++++|+++...+.......+..+.+.|||
T Consensus 127 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 127 QELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNP 206 (290)
T ss_dssp CEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCC
T ss_pred CEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCC
Confidence 99999999999888888999999999999999999777777899999999999999999544444555667788899999
Q ss_pred CCCCCC
Q 048006 769 ELCGLP 774 (833)
Q Consensus 769 ~lc~~~ 774 (833)
|.|+|.
T Consensus 207 ~~C~c~ 212 (290)
T 1p9a_G 207 WLCNCE 212 (290)
T ss_dssp BCCSGG
T ss_pred ccCcCc
Confidence 999885
No 78
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.90 E-value=7.3e-23 Score=210.82 Aligned_cols=206 Identities=25% Similarity=0.294 Sum_probs=177.6
Q ss_pred CcccEEEcCCCcCcCCCCCcccCCCCCcEEEccCCcccccCCCCccCcCCccEEEcccCcCccccCccccCCCCCcEecc
Q 048006 485 SKLTYVDLSSNLLSGKLPDCWWTFDSLVILNLENNSFSGRIPDSMGFLQNIQTLSLHNNRLTGELSSSFRNCSQLRLLDL 564 (833)
Q Consensus 485 ~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 564 (833)
...+.++++++.++. +|..+. +++++|++++|++++..+..|..+++|++|++++|+++...+..|..+++|++|++
T Consensus 16 ~~~~~l~~~~~~l~~-ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l 92 (270)
T 2o6q_A 16 NNKNSVDCSSKKLTA-IPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWV 92 (270)
T ss_dssp TTTTEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEEC
T ss_pred CCCCEEEccCCCCCc-cCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEEC
Confidence 457789999999884 565443 57999999999999877778999999999999999999777777889999999999
Q ss_pred CCCccCCCCCcchhhcCCccceEEecCCcccccccccccCCCCCCEEeccCCcCcccCCccccccccccccCCCCccccc
Q 048006 565 GKNALYGEIPTWMGESLSNLIVLSLKSNKFHGKIPFQLCQLAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKD 644 (833)
Q Consensus 565 ~~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~ 644 (833)
++|++. .+|...+..+++|++|++++|++++..+..+..+++|++|++++|.+.+..+..|..+++|
T Consensus 93 ~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L------------ 159 (270)
T 2o6q_A 93 TDNKLQ-ALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSL------------ 159 (270)
T ss_dssp CSSCCC-CCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC------------
T ss_pred CCCcCC-cCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCccc------------
Confidence 999998 6666555578999999999999998888888999999999999999987666667766666
Q ss_pred ceEEeeccCcchhccccCcccEEEccCCcCCCCCchhhhcccCCcEEECCCccccccCCcccCCCCCCCEEeCCCCcCcc
Q 048006 645 KLMLTWKGSEREYRSTLGLVKSLELSNNNLNGAVPEEIMDLVGLVALNLSKNHLTGQISPKIGQLKSLDFLDLSRNQLVG 724 (833)
Q Consensus 645 ~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 724 (833)
+.|++++|++++..+..|..+++|++|+|++|++++..+..|..+++|+.|+|++|++..
T Consensus 160 --------------------~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 219 (270)
T 2o6q_A 160 --------------------KELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDC 219 (270)
T ss_dssp --------------------CEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred --------------------ceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeC
Confidence 999999999998777789999999999999999998777789999999999999999875
Q ss_pred cC
Q 048006 725 GI 726 (833)
Q Consensus 725 ~~ 726 (833)
.-
T Consensus 220 ~c 221 (270)
T 2o6q_A 220 TC 221 (270)
T ss_dssp SS
T ss_pred CC
Confidence 43
No 79
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.90 E-value=8.1e-24 Score=218.13 Aligned_cols=223 Identities=22% Similarity=0.267 Sum_probs=163.9
Q ss_pred CcccEEEcCCCcCcCCCCCcccCCCCCcEEEccCCcccccCCCCccCcCCccEEEcccCcCccccCccccCCCCCcEecc
Q 048006 485 SKLTYVDLSSNLLSGKLPDCWWTFDSLVILNLENNSFSGRIPDSMGFLQNIQTLSLHNNRLTGELSSSFRNCSQLRLLDL 564 (833)
Q Consensus 485 ~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 564 (833)
..+..+++..+.+.+.. ....+++|+.|++++|.++.. ..+..+++|++|++++|.+++. ..+..+++|++|++
T Consensus 19 ~~l~~l~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L 92 (272)
T 3rfs_A 19 AETIKANLKKKSVTDAV--TQNELNSIDQIIANNSDIKSV--QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLIL 92 (272)
T ss_dssp HHHHHHHHTCSCTTSEE--CHHHHTTCCEEECTTSCCCCC--TTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEEC
T ss_pred HHHHHHHhcCccccccc--ccccccceeeeeeCCCCcccc--cccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEEC
Confidence 34445555555555432 345567777777777777632 3466777777888877777753 36777778888888
Q ss_pred CCCccCCCCCcchhhcCCccceEEecCCcccccccccccCCCCCCEEeccCCcCcccCCccccccccccccCCCCccccc
Q 048006 565 GKNALYGEIPTWMGESLSNLIVLSLKSNKFHGKIPFQLCQLAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKD 644 (833)
Q Consensus 565 ~~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~ 644 (833)
++|.++ .++...+..+++|++|++++|++++..+..+..+++|++|++++|++++..+..|..+++|
T Consensus 93 ~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L------------ 159 (272)
T 3rfs_A 93 TGNQLQ-SLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNL------------ 159 (272)
T ss_dssp TTSCCC-CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC------------
T ss_pred CCCccC-ccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccC------------
Confidence 888877 4444433367788888888888876666667788888888888888876666666666555
Q ss_pred ceEEeeccCcchhccccCcccEEEccCCcCCCCCchhhhcccCCcEEECCCccccccCCcccCCCCCCCEEeCCCCcCcc
Q 048006 645 KLMLTWKGSEREYRSTLGLVKSLELSNNNLNGAVPEEIMDLVGLVALNLSKNHLTGQISPKIGQLKSLDFLDLSRNQLVG 724 (833)
Q Consensus 645 ~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 724 (833)
+.|++++|++++..+..+..+++|++|++++|++++..|..+..+++|+.|++++|++.+
T Consensus 160 --------------------~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 219 (272)
T 3rfs_A 160 --------------------TELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC 219 (272)
T ss_dssp --------------------CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred --------------------CEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccc
Confidence 788888888887777777888888888888888888777778888889999999888875
Q ss_pred cCCccccCCCCCCEEECcCCcCccCCCCc
Q 048006 725 GIPSSLSQLSGLSVMDLSYNNLSGKIPTV 753 (833)
Q Consensus 725 ~~p~~l~~l~~L~~L~ls~N~l~g~ip~~ 753 (833)
.. +.|+.++++.|.++|.+|..
T Consensus 220 ~~-------~~l~~l~~~~n~~~g~ip~~ 241 (272)
T 3rfs_A 220 TC-------PGIRYLSEWINKHSGVVRNS 241 (272)
T ss_dssp CT-------TTTHHHHHHHHHTGGGBBCT
T ss_pred cC-------cHHHHHHHHHHhCCCcccCc
Confidence 53 46788888889998888864
No 80
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.89 E-value=3.7e-23 Score=213.15 Aligned_cols=224 Identities=21% Similarity=0.220 Sum_probs=187.4
Q ss_pred eeecCCCcccccccccccccCCcccEEEcCCCcCcCCCCCcccCCCCCcEEEccCCcccccCCCCccCcCCccEEEcccC
Q 048006 464 FLNLSKNRFSGSISFLCSISGSKLTYVDLSSNLLSGKLPDCWWTFDSLVILNLENNSFSGRIPDSMGFLQNIQTLSLHNN 543 (833)
Q Consensus 464 ~L~l~~n~l~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n 543 (833)
.+++..+.+.+..... .+++|+.|++++|.++.. ..+..+++|++|++++|.+++. ..+..+++|++|++++|
T Consensus 23 ~l~l~~~~~~~~~~~~---~l~~L~~L~l~~~~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n 95 (272)
T 3rfs_A 23 KANLKKKSVTDAVTQN---ELNSIDQIIANNSDIKSV--QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGN 95 (272)
T ss_dssp HHHHTCSCTTSEECHH---HHTTCCEEECTTSCCCCC--TTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTS
T ss_pred HHHhcCcccccccccc---cccceeeeeeCCCCcccc--cccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCC
Confidence 3444444444333222 147899999999998843 3588899999999999999863 47889999999999999
Q ss_pred cCccccCccccCCCCCcEeccCCCccCCCCCcchhhcCCccceEEecCCcccccccccccCCCCCCEEeccCCcCcccCC
Q 048006 544 RLTGELSSSFRNCSQLRLLDLGKNALYGEIPTWMGESLSNLIVLSLKSNKFHGKIPFQLCQLAFLQVLDLSLNNISGKIP 623 (833)
Q Consensus 544 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p 623 (833)
.+++..+..|..+++|++|++++|+++ .+|...+..+++|++|++++|.+++..+..+..+++|+.|++++|++++..+
T Consensus 96 ~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 174 (272)
T 3rfs_A 96 QLQSLPNGVFDKLTNLKELVLVENQLQ-SLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPE 174 (272)
T ss_dssp CCCCCCTTTTTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred ccCccChhHhcCCcCCCEEECCCCcCC-ccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCH
Confidence 999888888999999999999999998 5555444479999999999999998777778999999999999999998777
Q ss_pred ccccccccccccCCCCcccccceEEeeccCcchhccccCcccEEEccCCcCCCCCchhhhcccCCcEEECCCccccccCC
Q 048006 624 KCFNNFTAMTQERSSDPTIKDKLMLTWKGSEREYRSTLGLVKSLELSNNNLNGAVPEEIMDLVGLVALNLSKNHLTGQIS 703 (833)
Q Consensus 624 ~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p 703 (833)
..|..+++| +.|++++|++++..+..+..+++|++|++++|.+.+.
T Consensus 175 ~~~~~l~~L--------------------------------~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~-- 220 (272)
T 3rfs_A 175 GVFDKLTQL--------------------------------KDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT-- 220 (272)
T ss_dssp TTTTTCTTC--------------------------------CEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC--
T ss_pred HHhcCCccC--------------------------------CEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcccc--
Confidence 777776666 9999999999988888899999999999999998854
Q ss_pred cccCCCCCCCEEeCCCCcCcccCCccccCCC
Q 048006 704 PKIGQLKSLDFLDLSRNQLVGGIPSSLSQLS 734 (833)
Q Consensus 704 ~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~ 734 (833)
+++|+.|+++.|.++|.+|..++.++
T Consensus 221 -----~~~l~~l~~~~n~~~g~ip~~~~~~~ 246 (272)
T 3rfs_A 221 -----CPGIRYLSEWINKHSGVVRNSAGSVA 246 (272)
T ss_dssp -----TTTTHHHHHHHHHTGGGBBCTTSCBC
T ss_pred -----CcHHHHHHHHHHhCCCcccCcccccC
Confidence 45799999999999999999887654
No 81
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.88 E-value=6.9e-24 Score=228.51 Aligned_cols=258 Identities=22% Similarity=0.221 Sum_probs=190.5
Q ss_pred eecCCCcccccccccccccCCcccEEEcCCCcCcCCCC----CcccCCC-CCcEEEccCCcccccCCCCccCc-----CC
Q 048006 465 LNLSKNRFSGSISFLCSISGSKLTYVDLSSNLLSGKLP----DCWWTFD-SLVILNLENNSFSGRIPDSMGFL-----QN 534 (833)
Q Consensus 465 L~l~~n~l~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~----~~~~~l~-~L~~L~Ls~N~l~~~~~~~~~~l-----~~ 534 (833)
+.++.|.+++.++..... .++|++|++++|.+++..+ ..+..++ +|++|++++|.+++..+..+..+ ++
T Consensus 3 ~~ls~n~~~~~~~~~~~~-~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSI-PHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EECCCCTTCCHHHHHHTS-CTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred cccccccchHHHHHHHhC-CCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 456677777766654433 3559999999999887666 6777888 89999999999987766666664 88
Q ss_pred ccEEEcccCcCccccCcc----ccCC-CCCcEeccCCCccCCCCCcchhh---c-CCccceEEecCCccccc----cccc
Q 048006 535 IQTLSLHNNRLTGELSSS----FRNC-SQLRLLDLGKNALYGEIPTWMGE---S-LSNLIVLSLKSNKFHGK----IPFQ 601 (833)
Q Consensus 535 L~~L~L~~n~l~~~~~~~----~~~l-~~L~~L~L~~n~l~~~~p~~~~~---~-l~~L~~L~L~~N~l~~~----~~~~ 601 (833)
|++|++++|.+++..+.. +..+ ++|++|++++|++.+..+..+.. . .++|++|+|++|.++.. ++..
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~ 161 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI 161 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH
Confidence 999999999998766654 3444 88999999999998554444332 2 36899999999998853 3344
Q ss_pred ccCCC-CCCEEeccCCcCcccCCccccccccccccCCCCcccccceEEeeccCcchhcccc-CcccEEEccCCcCCCC--
Q 048006 602 LCQLA-FLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKDKLMLTWKGSEREYRSTL-GLVKSLELSNNNLNGA-- 677 (833)
Q Consensus 602 l~~l~-~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~L~~L~Ls~n~l~~~-- 677 (833)
+..++ +|++|+|++|++++..+..+... .... ++|+.|||++|.+++.
T Consensus 162 l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~----------------------------l~~~~~~L~~L~Ls~N~i~~~~~ 213 (362)
T 3goz_A 162 LAAIPANVNSLNLRGNNLASKNCAELAKF----------------------------LASIPASVTSLDLSANLLGLKSY 213 (362)
T ss_dssp HHTSCTTCCEEECTTSCGGGSCHHHHHHH----------------------------HHTSCTTCCEEECTTSCGGGSCH
T ss_pred HhcCCccccEeeecCCCCchhhHHHHHHH----------------------------HHhCCCCCCEEECCCCCCChhHH
Confidence 45565 89999999999987665544322 0112 3569999999999863
Q ss_pred --Cchhhhc-ccCCcEEECCCccccccCC----cccCCCCCCCEEeCCCCcCcccC-------CccccCCCCCCEEECcC
Q 048006 678 --VPEEIMD-LVGLVALNLSKNHLTGQIS----PKIGQLKSLDFLDLSRNQLVGGI-------PSSLSQLSGLSVMDLSY 743 (833)
Q Consensus 678 --~p~~l~~-l~~L~~L~Ls~N~l~~~~p----~~l~~l~~L~~L~Ls~N~l~~~~-------p~~l~~l~~L~~L~ls~ 743 (833)
++..+.. .++|++|+|++|.+++..+ ..+..+++|+.|+|++|.+.+.. +..+..+++|+.||+++
T Consensus 214 ~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~ 293 (362)
T 3goz_A 214 AELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNG 293 (362)
T ss_dssp HHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTS
T ss_pred HHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCC
Confidence 4555655 4589999999999986554 34567899999999999955433 34677888999999999
Q ss_pred CcCccCCC
Q 048006 744 NNLSGKIP 751 (833)
Q Consensus 744 N~l~g~ip 751 (833)
|++....|
T Consensus 294 N~l~~~~~ 301 (362)
T 3goz_A 294 KEIHPSHS 301 (362)
T ss_dssp CBCCGGGC
T ss_pred CcCCCcch
Confidence 99887633
No 82
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.88 E-value=4.7e-22 Score=202.34 Aligned_cols=211 Identities=22% Similarity=0.216 Sum_probs=136.7
Q ss_pred ccEEEcccCcCccccCccccCCCCCcEeccCCCccCCCCCcchhhcCCccceEEecCCcccccccccccCCCCCCEEecc
Q 048006 535 IQTLSLHNNRLTGELSSSFRNCSQLRLLDLGKNALYGEIPTWMGESLSNLIVLSLKSNKFHGKIPFQLCQLAFLQVLDLS 614 (833)
Q Consensus 535 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls 614 (833)
.++++++++.++ .+|..+. ++++.|++++|.+.+..+..+. .+++|++|++++|.+++..+..+..+++|++|+++
T Consensus 16 ~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 91 (251)
T 3m19_A 16 KKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFR-GLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA 91 (251)
T ss_dssp GTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTT-TCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred CeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhc-CcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence 344444444444 2332222 3455555555555533332232 45566666666666665555566667777777777
Q ss_pred CCcCcccCCccccccccccccCCCCcccccceEEeeccCcchhccccCcccEEEccCCcCCCCCchhhhcccCCcEEECC
Q 048006 615 LNNISGKIPKCFNNFTAMTQERSSDPTIKDKLMLTWKGSEREYRSTLGLVKSLELSNNNLNGAVPEEIMDLVGLVALNLS 694 (833)
Q Consensus 615 ~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls 694 (833)
+|++++..+..|..+++| +.|+|++|++++..+..|..+++|++|+|+
T Consensus 92 ~n~l~~~~~~~~~~l~~L--------------------------------~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls 139 (251)
T 3m19_A 92 NNQLASLPLGVFDHLTQL--------------------------------DKLYLGGNQLKSLPSGVFDRLTKLKELRLN 139 (251)
T ss_dssp TSCCCCCCTTTTTTCTTC--------------------------------CEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCcccccChhHhcccCCC--------------------------------CEEEcCCCcCCCcChhHhccCCcccEEECc
Confidence 777776555556555555 778888888886666667888999999999
Q ss_pred CccccccCCcccCCCCCCCEEeCCCCcCcccCCccccCCCCCCEEECcCCcCccCCCCccccC-cc-----ccccccCCC
Q 048006 695 KNHLTGQISPKIGQLKSLDFLDLSRNQLVGGIPSSLSQLSGLSVMDLSYNNLSGKIPTVTQLQ-SF-----NDTVYAGNP 768 (833)
Q Consensus 695 ~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~-~l-----~~~~~~gn~ 768 (833)
+|++++..+..|+.+++|+.|+|++|++++..|..+..+++|++|++++|++++.......+. ++ ......|+
T Consensus 140 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~~~l~~~~~~~~~~~~~~~~~- 218 (251)
T 3m19_A 140 TNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCSRCEILYLSQWIRENSNKVKDGTGQ- 218 (251)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTTSTTHHHHHHHHHHSGGGBCC-----
T ss_pred CCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCCccccHHHHHHHHhcccceeeccCc-
Confidence 999997777789999999999999999998888889999999999999999998755432211 11 11122344
Q ss_pred CCCCCCCCCCCCCC
Q 048006 769 ELCGLPLPNKCRDE 782 (833)
Q Consensus 769 ~lc~~~~~~~c~~~ 782 (833)
.+|+.+....|..+
T Consensus 219 ~~~~~~~~~~C~~~ 232 (251)
T 3m19_A 219 NLHESPDGVTCSDG 232 (251)
T ss_dssp ---CCGGGCBBTTS
T ss_pred ccccCCCcCccCCC
Confidence 35655555677654
No 83
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.87 E-value=5.4e-22 Score=200.43 Aligned_cols=196 Identities=21% Similarity=0.211 Sum_probs=106.8
Q ss_pred CCcEEEccCCcccccCCCCccCcCCccEEEcccCc-CccccCccccCCCCCcEeccCC-CccCCCCCcchhhcCCccceE
Q 048006 510 SLVILNLENNSFSGRIPDSMGFLQNIQTLSLHNNR-LTGELSSSFRNCSQLRLLDLGK-NALYGEIPTWMGESLSNLIVL 587 (833)
Q Consensus 510 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~p~~~~~~l~~L~~L 587 (833)
++++|++++|++++..+..|..+++|++|++++|+ +++..+..|.++++|++|++++ |+++ .+|...+..+++|++|
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~-~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLT-YIDPDALKELPLLKFL 110 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCC-EECTTSEECCTTCCEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCee-EcCHHHhCCCCCCCEE
Confidence 55555555555555444455555555555555554 5544444555555555555555 5554 3333322245555555
Q ss_pred EecCCcccccccccccCCCCCC---EEeccCC-cCcccCCccccccccccccCCCCcccccceEEeeccCcchhccccCc
Q 048006 588 SLKSNKFHGKIPFQLCQLAFLQ---VLDLSLN-NISGKIPKCFNNFTAMTQERSSDPTIKDKLMLTWKGSEREYRSTLGL 663 (833)
Q Consensus 588 ~L~~N~l~~~~~~~l~~l~~L~---~L~Ls~N-~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 663 (833)
++++|++++ +|. +..+++|+ +|++++| .+.+..+..|.++++|
T Consensus 111 ~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L------------------------------- 157 (239)
T 2xwt_C 111 GIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNE------------------------------- 157 (239)
T ss_dssp EEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSS-------------------------------
T ss_pred eCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcc-------------------------------
Confidence 555555553 333 44555555 6666666 5554444445444444
Q ss_pred cc-EEEccCCcCCCCCchhhhcccCCcEEECCCcc-ccccCCcccCCC-CCCCEEeCCCCcCcccCCccccCCCCCCEEE
Q 048006 664 VK-SLELSNNNLNGAVPEEIMDLVGLVALNLSKNH-LTGQISPKIGQL-KSLDFLDLSRNQLVGGIPSSLSQLSGLSVMD 740 (833)
Q Consensus 664 L~-~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~-l~~~~p~~l~~l-~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 740 (833)
+ .|++++|+++ .+|......++|++|++++|+ +++..+..|..+ ++|+.|++++|++++. |.. .+++|+.|+
T Consensus 158 -~~~L~l~~n~l~-~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l-~~~--~~~~L~~L~ 232 (239)
T 2xwt_C 158 -TLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTAL-PSK--GLEHLKELI 232 (239)
T ss_dssp -EEEEECCSCCCC-EECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCC-CCT--TCTTCSEEE
T ss_pred -eeEEEcCCCCCc-ccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccC-Chh--HhccCceee
Confidence 5 5666666665 333332223566666666663 665555666666 6677777777776633 322 455666666
Q ss_pred CcCC
Q 048006 741 LSYN 744 (833)
Q Consensus 741 ls~N 744 (833)
++++
T Consensus 233 l~~~ 236 (239)
T 2xwt_C 233 ARNT 236 (239)
T ss_dssp CTTC
T ss_pred ccCc
Confidence 6655
No 84
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.87 E-value=3.6e-24 Score=233.25 Aligned_cols=236 Identities=17% Similarity=0.206 Sum_probs=182.5
Q ss_pred CCcccEEEcCCCcCcCCC----CCcccCCCCCcEEEccCC---cccccCCCCc-------cCcCCccEEEcccCcCcc--
Q 048006 484 GSKLTYVDLSSNLLSGKL----PDCWWTFDSLVILNLENN---SFSGRIPDSM-------GFLQNIQTLSLHNNRLTG-- 547 (833)
Q Consensus 484 ~~~L~~L~ls~n~l~~~~----~~~~~~l~~L~~L~Ls~N---~l~~~~~~~~-------~~l~~L~~L~L~~n~l~~-- 547 (833)
+++|++|++++|.+++.. +..+..+++|++|+|++| ++++.+|..+ ..+++|++|+|++|.+++
T Consensus 31 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~ 110 (386)
T 2ca6_A 31 DDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTA 110 (386)
T ss_dssp CSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTT
T ss_pred CCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHH
Confidence 577888888888887653 334667888999999886 4444555444 678889999999999886
Q ss_pred --ccCccccCCCCCcEeccCCCccCCCCCcchhh---cC---------CccceEEecCCccc-cccc---ccccCCCCCC
Q 048006 548 --ELSSSFRNCSQLRLLDLGKNALYGEIPTWMGE---SL---------SNLIVLSLKSNKFH-GKIP---FQLCQLAFLQ 609 (833)
Q Consensus 548 --~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~---~l---------~~L~~L~L~~N~l~-~~~~---~~l~~l~~L~ 609 (833)
.++..+..+++|++|++++|.+.+..+..+.. .+ ++|++|++++|+++ +.++ ..+..+++|+
T Consensus 111 ~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~ 190 (386)
T 2ca6_A 111 QEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLH 190 (386)
T ss_dssp HHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCC
T ss_pred HHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcC
Confidence 46777888899999999999886433333332 22 78999999999887 3444 4667788999
Q ss_pred EEeccCCcCcc-----cCCccccccccccccCCCCcccccceEEeeccCcchhccccCcccEEEccCCcCC----CCCch
Q 048006 610 VLDLSLNNISG-----KIPKCFNNFTAMTQERSSDPTIKDKLMLTWKGSEREYRSTLGLVKSLELSNNNLN----GAVPE 680 (833)
Q Consensus 610 ~L~Ls~N~l~~-----~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~----~~~p~ 680 (833)
.|++++|++.. ..|..+..+ ++|+.|+|++|.++ +.+|.
T Consensus 191 ~L~L~~n~l~~~g~~~l~~~~l~~~--------------------------------~~L~~L~Ls~n~l~~~g~~~l~~ 238 (386)
T 2ca6_A 191 TVKMVQNGIRPEGIEHLLLEGLAYC--------------------------------QELKVLDLQDNTFTHLGSSALAI 238 (386)
T ss_dssp EEECCSSCCCHHHHHHHHHTTGGGC--------------------------------TTCCEEECCSSCCHHHHHHHHHH
T ss_pred EEECcCCCCCHhHHHHHHHHHhhcC--------------------------------CCccEEECcCCCCCcHHHHHHHH
Confidence 99999998862 223244444 44599999999996 57888
Q ss_pred hhhcccCCcEEECCCcccccc----CCccc--CCCCCCCEEeCCCCcCcc----cCCccc-cCCCCCCEEECcCCcCccC
Q 048006 681 EIMDLVGLVALNLSKNHLTGQ----ISPKI--GQLKSLDFLDLSRNQLVG----GIPSSL-SQLSGLSVMDLSYNNLSGK 749 (833)
Q Consensus 681 ~l~~l~~L~~L~Ls~N~l~~~----~p~~l--~~l~~L~~L~Ls~N~l~~----~~p~~l-~~l~~L~~L~ls~N~l~g~ 749 (833)
.+..+++|++|+|++|.+++. +|..+ +.+++|+.|+|++|++++ .+|..+ .++++|++|++++|++++.
T Consensus 239 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~ 318 (386)
T 2ca6_A 239 ALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEE 318 (386)
T ss_dssp HGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTT
T ss_pred HHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcc
Confidence 899999999999999999876 56666 348999999999999998 478777 6689999999999999987
Q ss_pred CC
Q 048006 750 IP 751 (833)
Q Consensus 750 ip 751 (833)
.|
T Consensus 319 ~~ 320 (386)
T 2ca6_A 319 DD 320 (386)
T ss_dssp SH
T ss_pred hh
Confidence 75
No 85
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.87 E-value=6.7e-23 Score=215.78 Aligned_cols=200 Identities=23% Similarity=0.193 Sum_probs=107.5
Q ss_pred CCcEEEccCCcccccCCCCc--cCcCCccEEEcccCcCccccC----ccccCCCCCcEeccCCCccCCCCCcchhhcCCc
Q 048006 510 SLVILNLENNSFSGRIPDSM--GFLQNIQTLSLHNNRLTGELS----SSFRNCSQLRLLDLGKNALYGEIPTWMGESLSN 583 (833)
Q Consensus 510 ~L~~L~Ls~N~l~~~~~~~~--~~l~~L~~L~L~~n~l~~~~~----~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~ 583 (833)
+|++|++++|.+++..|..+ ..+++|++|++++|.+++..+ ..+..+++|++|++++|++.+..|..+. .+++
T Consensus 92 ~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~-~l~~ 170 (310)
T 4glp_A 92 RLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVR-AFPA 170 (310)
T ss_dssp CCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCC-CCTT
T ss_pred ceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhc-cCCC
Confidence 34444444444444444443 444444444444444443222 1223444555555555555422222222 3455
Q ss_pred cceEEecCCccccc--c--cccccCCCCCCEEeccCCcCcccCCc----cccccccccccCCCCcccccceEEeeccCcc
Q 048006 584 LIVLSLKSNKFHGK--I--PFQLCQLAFLQVLDLSLNNISGKIPK----CFNNFTAMTQERSSDPTIKDKLMLTWKGSER 655 (833)
Q Consensus 584 L~~L~L~~N~l~~~--~--~~~l~~l~~L~~L~Ls~N~l~~~~p~----~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~ 655 (833)
|++|+|++|++.+. + +..+..+++|++|++++|+++. ++. .+..++
T Consensus 171 L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~~l~------------------------- 224 (310)
T 4glp_A 171 LTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PTGVCAALAAAGV------------------------- 224 (310)
T ss_dssp CCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHHHHHHHHHHTC-------------------------
T ss_pred CCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHHHHHHHHhcCC-------------------------
Confidence 55555555554321 1 1122455666666666666642 111 122222
Q ss_pred hhccccCcccEEEccCCcCCCCCchhhhcc---cCCcEEECCCccccccCCcccCCCCCCCEEeCCCCcCcccCCccccC
Q 048006 656 EYRSTLGLVKSLELSNNNLNGAVPEEIMDL---VGLVALNLSKNHLTGQISPKIGQLKSLDFLDLSRNQLVGGIPSSLSQ 732 (833)
Q Consensus 656 ~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l---~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~ 732 (833)
+|++|||++|++++..|..+..+ ++|++|+|++|+++ .+|..+. ++|+.|+|++|++++. |. +..
T Consensus 225 -------~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~ 292 (310)
T 4glp_A 225 -------QPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDE 292 (310)
T ss_dssp -------CCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTS
T ss_pred -------CCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhh
Confidence 33666666666666656555555 57777777777777 5666654 6788888888888754 33 567
Q ss_pred CCCCCEEECcCCcCcc
Q 048006 733 LSGLSVMDLSYNNLSG 748 (833)
Q Consensus 733 l~~L~~L~ls~N~l~g 748 (833)
+++|+.|++++|+++.
T Consensus 293 l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 293 LPEVDNLTLDGNPFLV 308 (310)
T ss_dssp CCCCSCEECSSTTTSC
T ss_pred CCCccEEECcCCCCCC
Confidence 7788888888887763
No 86
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.87 E-value=1.6e-21 Score=205.15 Aligned_cols=224 Identities=23% Similarity=0.248 Sum_probs=180.6
Q ss_pred CCCcEEEccCCcccccCCC---CccCcCCccEEEcccCcCccccCccc--cCCCCCcEeccCCCccCCCCCc----chhh
Q 048006 509 DSLVILNLENNSFSGRIPD---SMGFLQNIQTLSLHNNRLTGELSSSF--RNCSQLRLLDLGKNALYGEIPT----WMGE 579 (833)
Q Consensus 509 ~~L~~L~Ls~N~l~~~~~~---~~~~l~~L~~L~L~~n~l~~~~~~~~--~~l~~L~~L~L~~n~l~~~~p~----~~~~ 579 (833)
..++.+.+.++.++...-. .+..+++|++|++++|.+++..|..+ ..+++|++|++++|++.+..+. .+.
T Consensus 64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~- 142 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQW- 142 (310)
T ss_dssp CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTT-
T ss_pred cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhh-
Confidence 4578888888877532110 12235679999999999999999888 8999999999999999976552 223
Q ss_pred cCCccceEEecCCcccccccccccCCCCCCEEeccCCcCccc--C--CccccccccccccCCCCcccccceEEeeccCcc
Q 048006 580 SLSNLIVLSLKSNKFHGKIPFQLCQLAFLQVLDLSLNNISGK--I--PKCFNNFTAMTQERSSDPTIKDKLMLTWKGSER 655 (833)
Q Consensus 580 ~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~--~--p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~ 655 (833)
.+++|++|++++|++.+..+..+..+++|++|++++|++.+. + +..+..++
T Consensus 143 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~------------------------- 197 (310)
T 4glp_A 143 LKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFP------------------------- 197 (310)
T ss_dssp BCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSC-------------------------
T ss_pred hccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCC-------------------------
Confidence 589999999999999988889999999999999999998652 1 12223444
Q ss_pred hhccccCcccEEEccCCcCCCCCch----hhhcccCCcEEECCCccccccCCcccCCC---CCCCEEeCCCCcCcccCCc
Q 048006 656 EYRSTLGLVKSLELSNNNLNGAVPE----EIMDLVGLVALNLSKNHLTGQISPKIGQL---KSLDFLDLSRNQLVGGIPS 728 (833)
Q Consensus 656 ~~~~~~~~L~~L~Ls~n~l~~~~p~----~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l---~~L~~L~Ls~N~l~~~~p~ 728 (833)
+|++|+|++|+++ .++. .++.+++|++|+|++|++++.+|..+..+ ++|++|+|++|+++ .+|.
T Consensus 198 -------~L~~L~Ls~N~l~-~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~ 268 (310)
T 4glp_A 198 -------AIQNLALRNTGME-TPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPK 268 (310)
T ss_dssp -------CCCSCBCCSSCCC-CHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCS
T ss_pred -------CCCEEECCCCCCC-chHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhh
Confidence 4489999999997 3444 35788999999999999999889888877 69999999999999 6787
Q ss_pred cccCCCCCCEEECcCCcCccCCCCccccCccccccccCCCCC
Q 048006 729 SLSQLSGLSVMDLSYNNLSGKIPTVTQLQSFNDTVYAGNPEL 770 (833)
Q Consensus 729 ~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~l~~~~~~gn~~l 770 (833)
.+. ++|++||+++|++++. |....+..+..+.+.||+..
T Consensus 269 ~~~--~~L~~L~Ls~N~l~~~-~~~~~l~~L~~L~L~~N~l~ 307 (310)
T 4glp_A 269 GLP--AKLRVLDLSSNRLNRA-PQPDELPEVDNLTLDGNPFL 307 (310)
T ss_dssp CCC--SCCSCEECCSCCCCSC-CCTTSCCCCSCEECSSTTTS
T ss_pred hhc--CCCCEEECCCCcCCCC-chhhhCCCccEEECcCCCCC
Confidence 775 7999999999999974 43456778888889999763
No 87
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.86 E-value=1.6e-21 Score=196.88 Aligned_cols=198 Identities=16% Similarity=0.158 Sum_probs=169.4
Q ss_pred CcccEEEcCCCcCcCCCCCcccCCCCCcEEEccCCc-ccccCCCCccCcCCccEEEccc-CcCccccCccccCCCCCcEe
Q 048006 485 SKLTYVDLSSNLLSGKLPDCWWTFDSLVILNLENNS-FSGRIPDSMGFLQNIQTLSLHN-NRLTGELSSSFRNCSQLRLL 562 (833)
Q Consensus 485 ~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L 562 (833)
+++++|++++|++++..+..|..+++|++|++++|. +++..+..|..+++|++|++++ |++++..+..|.++++|++|
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL 110 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence 578999999999998877789999999999999997 8877777899999999999998 99998888899999999999
Q ss_pred ccCCCccCCCCCcchhhcCCccc---eEEecCC-cccccccccccCCCCCC-EEeccCCcCcccCCccccccccccccCC
Q 048006 563 DLGKNALYGEIPTWMGESLSNLI---VLSLKSN-KFHGKIPFQLCQLAFLQ-VLDLSLNNISGKIPKCFNNFTAMTQERS 637 (833)
Q Consensus 563 ~L~~n~l~~~~p~~~~~~l~~L~---~L~L~~N-~l~~~~~~~l~~l~~L~-~L~Ls~N~l~~~~p~~~~~l~~L~~l~~ 637 (833)
++++|+++ .+|. +. .+++|+ +|++++| .+++..+..|.++++|+ .|++++|+++...+..|.. ++
T Consensus 111 ~l~~n~l~-~lp~-~~-~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~------ 180 (239)
T 2xwt_C 111 GIFNTGLK-MFPD-LT-KVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TK------ 180 (239)
T ss_dssp EEEEECCC-SCCC-CT-TCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CE------
T ss_pred eCCCCCCc-cccc-cc-cccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CC------
Confidence 99999998 5887 33 688888 9999999 99977777899999999 9999999998333333332 33
Q ss_pred CCcccccceEEeeccCcchhccccCcccEEEccCCc-CCCCCchhhhcc-cCCcEEECCCccccccCCcccCCCCCCCEE
Q 048006 638 SDPTIKDKLMLTWKGSEREYRSTLGLVKSLELSNNN-LNGAVPEEIMDL-VGLVALNLSKNHLTGQISPKIGQLKSLDFL 715 (833)
Q Consensus 638 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~-l~~~~p~~l~~l-~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L 715 (833)
|+.|++++|+ +++..+..|..+ ++|++|++++|++++ +|.. .+++|+.|
T Consensus 181 --------------------------L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~-l~~~--~~~~L~~L 231 (239)
T 2xwt_C 181 --------------------------LDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTA-LPSK--GLEHLKEL 231 (239)
T ss_dssp --------------------------EEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCC-CCCT--TCTTCSEE
T ss_pred --------------------------CCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCcccc-CChh--HhccCcee
Confidence 4999999995 987777889999 999999999999995 4443 67899999
Q ss_pred eCCCCc
Q 048006 716 DLSRNQ 721 (833)
Q Consensus 716 ~Ls~N~ 721 (833)
+++++.
T Consensus 232 ~l~~~~ 237 (239)
T 2xwt_C 232 IARNTW 237 (239)
T ss_dssp ECTTC-
T ss_pred eccCcc
Confidence 998874
No 88
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.86 E-value=7e-23 Score=218.85 Aligned_cols=252 Identities=17% Similarity=0.207 Sum_probs=183.5
Q ss_pred CceeecCCCcccccccccccccCCcccEEEcCCCcCcCCCCCcccCCCCCcEEEccCCccccc-CCCCccCcCCccEEEc
Q 048006 462 SSFLNLSKNRFSGSISFLCSISGSKLTYVDLSSNLLSGKLPDCWWTFDSLVILNLENNSFSGR-IPDSMGFLQNIQTLSL 540 (833)
Q Consensus 462 L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~L 540 (833)
++.++++++.+........ ..+.++.+++++|.+.+..+. +..+++|++|++++|.+++. ++..+..+++|++|++
T Consensus 49 ~~~l~l~~~~~~~~~~~~~--~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L 125 (336)
T 2ast_B 49 WQTLDLTGKNLHPDVTGRL--LSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSL 125 (336)
T ss_dssp SSEEECTTCBCCHHHHHHH--HHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEEC
T ss_pred heeeccccccCCHHHHHhh--hhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeC
Confidence 5566666665552111100 026788899999988877665 45688999999999988765 6777888899999999
Q ss_pred ccCcCccccCccccCCCCCcEeccCCC-ccCCC-CCcchhhcCCccceEEecCC-ccccc-ccccccCCC-CCCEEeccC
Q 048006 541 HNNRLTGELSSSFRNCSQLRLLDLGKN-ALYGE-IPTWMGESLSNLIVLSLKSN-KFHGK-IPFQLCQLA-FLQVLDLSL 615 (833)
Q Consensus 541 ~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~-~p~~~~~~l~~L~~L~L~~N-~l~~~-~~~~l~~l~-~L~~L~Ls~ 615 (833)
++|.+++..+..+..+++|++|++++| .+++. ++..+. .+++|++|++++| .+++. ++..+..++ +|++|++++
T Consensus 126 ~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~-~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~ 204 (336)
T 2ast_B 126 EGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLS-SCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSG 204 (336)
T ss_dssp TTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHH-HCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCS
T ss_pred cCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHh-cCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCC
Confidence 999888888888888999999999998 56542 444444 6888999999999 88754 566777888 899999998
Q ss_pred Cc--Cc-ccCCccccccccccccCCCCcccccceEEeeccCcchhccccCcccEEEccCCc-CCCCCchhhhcccCCcEE
Q 048006 616 NN--IS-GKIPKCFNNFTAMTQERSSDPTIKDKLMLTWKGSEREYRSTLGLVKSLELSNNN-LNGAVPEEIMDLVGLVAL 691 (833)
Q Consensus 616 N~--l~-~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~-l~~~~p~~l~~l~~L~~L 691 (833)
|. ++ +.+|..+..+ ++|+.|++++|. +++..+..+..+++|++|
T Consensus 205 ~~~~~~~~~l~~~~~~~--------------------------------~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L 252 (336)
T 2ast_B 205 YRKNLQKSDLSTLVRRC--------------------------------PNLVHLDLSDSVMLKNDCFQEFFQLNYLQHL 252 (336)
T ss_dssp CGGGSCHHHHHHHHHHC--------------------------------TTCSEEECTTCTTCCGGGGGGGGGCTTCCEE
T ss_pred CcccCCHHHHHHHHhhC--------------------------------CCCCEEeCCCCCcCCHHHHHHHhCCCCCCEe
Confidence 84 44 2334444444 444889999998 777778888889999999
Q ss_pred ECCCcc-ccccCCcccCCCCCCCEEeCCCCcCcccCCccccCC-CCCCEEECcCCcCccCCCCc
Q 048006 692 NLSKNH-LTGQISPKIGQLKSLDFLDLSRNQLVGGIPSSLSQL-SGLSVMDLSYNNLSGKIPTV 753 (833)
Q Consensus 692 ~Ls~N~-l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l-~~L~~L~ls~N~l~g~ip~~ 753 (833)
++++|. ++......++++++|+.|++++| ++. ..+..+ ..++.|++++|++++..|..
T Consensus 253 ~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~---~~~~~l~~~l~~L~l~~n~l~~~~~~~ 312 (336)
T 2ast_B 253 SLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPD---GTLQLLKEALPHLQINCSHFTTIARPT 312 (336)
T ss_dssp ECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCT---TCHHHHHHHSTTSEESCCCSCCTTCSS
T ss_pred eCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCH---HHHHHHHhhCcceEEecccCccccCCc
Confidence 999995 33222235778899999999988 432 233333 24677778999999887754
No 89
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.86 E-value=9.5e-23 Score=219.60 Aligned_cols=28 Identities=18% Similarity=0.059 Sum_probs=18.0
Q ss_pred hhcccccccEEeecCCccccccchhHHh
Q 048006 384 WLQTQNQIELLDISNTGISDTIPDWFWN 411 (833)
Q Consensus 384 ~l~~l~~L~~L~Ls~n~i~~~~~~~~~~ 411 (833)
.+..+++|+.||+++|.+.+..+..+..
T Consensus 279 ~~~~l~~L~~LdL~~N~l~~~~~~~~~~ 306 (362)
T 3goz_A 279 AFPNIQKIILVDKNGKEIHPSHSIPISN 306 (362)
T ss_dssp TSTTCCEEEEECTTSCBCCGGGCHHHHH
T ss_pred HhccCCceEEEecCCCcCCCcchHHHHH
Confidence 3456667777777777777665555444
No 90
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.86 E-value=5.4e-23 Score=219.74 Aligned_cols=237 Identities=21% Similarity=0.233 Sum_probs=152.4
Q ss_pred CCCCcccceEecCCCCcEEEEECCCCCCCCCCcceecCccccCC--CCCCEEeCCCCCCCCCCccccccCCCCCCEEEcc
Q 048006 43 RDCCKWTGLRCSNKTNHVILLDLQPIDFDSFPLRGTISPALLKL--HDLRHLNLSFNDFSGSPIPEFIGSLSKLRYLDLF 120 (833)
Q Consensus 43 ~~~c~w~gv~c~~~~~~v~~l~L~~~~~~~~~l~~~~~~~l~~l--~~L~~L~Ls~n~~~~~~~p~~~~~l~~L~~L~Ls 120 (833)
.-|.+|.++.|+. ..++.+++++ +.+. +..+..+ +++++|++++|.+.+. .+. +..+++|++|+|+
T Consensus 34 ~vc~~W~~~~~~~--~~~~~l~l~~-----~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~-~~~-~~~~~~L~~L~L~ 101 (336)
T 2ast_B 34 GVCKRWYRLASDE--SLWQTLDLTG-----KNLH---PDVTGRLLSQGVIAFRCPRSFMDQP-LAE-HFSPFRVQHMDLS 101 (336)
T ss_dssp SSCHHHHHHHTCS--TTSSEEECTT-----CBCC---HHHHHHHHHTTCSEEECTTCEECSC-CCS-CCCCBCCCEEECT
T ss_pred HHHHHHHHHhcCc--hhheeecccc-----ccCC---HHHHHhhhhccceEEEcCCcccccc-chh-hccCCCCCEEEcc
Confidence 4566899998863 3567888887 4444 3456666 8899999999998864 444 5678999999999
Q ss_pred CCCCCCC-CCcccCCccccceecccCccCCCCCCcccccCCCCCcEEecCCC-CCCCCchhHHhhcCCCCCCEEEccCC-
Q 048006 121 GTVFAGP-IPPQLGNLSRLQHLDLGSNYLFSTGNLDWLSHLSYLRYLNLDES-NLANSSDWFQVIGKLHSLKTLSLHSC- 197 (833)
Q Consensus 121 ~n~l~~~-~p~~~~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~Ls~n-~~~~~~~~~~~l~~l~~L~~L~Ls~n- 197 (833)
+|.+.+. +|..+..+++|++|++++|.+.. ..+..++++++|++|++++| .+++. .++..+..+++|++|++++|
T Consensus 102 ~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~-~~~~~l~~~~~L~~L~L~~~~~l~~~-~l~~~~~~~~~L~~L~l~~~~ 179 (336)
T 2ast_B 102 NSVIEVSTLHGILSQCSKLQNLSLEGLRLSD-PIVNTLAKNSNLVRLNLSGCSGFSEF-ALQTLLSSCSRLDELNLSWCF 179 (336)
T ss_dssp TCEECHHHHHHHHTTBCCCSEEECTTCBCCH-HHHHHHTTCTTCSEEECTTCBSCCHH-HHHHHHHHCTTCCEEECCCCT
T ss_pred CCCcCHHHHHHHHhhCCCCCEEeCcCcccCH-HHHHHHhcCCCCCEEECCCCCCCCHH-HHHHHHhcCCCCCEEcCCCCC
Confidence 9988765 77788889999999999887643 33446777888888888888 45432 35566777788888888877
Q ss_pred CCCCC-CCccccccccCC-CCCEEEccCC--cCC-CCCCCcccccccCCcEEEccCcc-ccccccccccCCCCCcEEECc
Q 048006 198 YLPPV-IPLSLNHLNSST-SLETLVLSDN--NLT-SSIYPWLPNISSIFISIDLGFNQ-LQGSIPESFQHMVYLEHLRLS 271 (833)
Q Consensus 198 ~l~~~-~~~~~~~~~~~~-~L~~L~Ls~n--~l~-~~~~~~l~~l~~~L~~L~Ls~n~-l~~~~p~~~~~l~~L~~L~L~ 271 (833)
.+++. ++. ....++ +|++|++++| .++ +.++..+..+++ |++|++++|. +++..+..+..+++|++|+++
T Consensus 180 ~l~~~~~~~---~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~-L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~ 255 (336)
T 2ast_B 180 DFTEKHVQV---AVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPN-LVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLS 255 (336)
T ss_dssp TCCHHHHHH---HHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTT-CSEEECTTCTTCCGGGGGGGGGCTTCCEEECT
T ss_pred CcChHHHHH---HHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCC-CCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCC
Confidence 66543 222 122235 6777777776 343 233334444455 5555555555 444445555555555555555
Q ss_pred CCc-ccccccccccCCCCCcEEEccCC
Q 048006 272 FNE-LEGGIPKFFGNMCSLITLNLSNN 297 (833)
Q Consensus 272 ~n~-l~~~~p~~l~~l~~L~~L~Ls~n 297 (833)
+|. +.......+.++++|++|++++|
T Consensus 256 ~~~~~~~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 256 RCYDIIPETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp TCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred CCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence 553 22111123455555555555555
No 91
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.86 E-value=2.9e-21 Score=202.65 Aligned_cols=192 Identities=24% Similarity=0.383 Sum_probs=104.1
Q ss_pred CCCCcEEEccCCcccccCCCCccCcCCccEEEcccCcCccccCccccCCCCCcEeccCCCccCCCCCcchhhcCCccceE
Q 048006 508 FDSLVILNLENNSFSGRIPDSMGFLQNIQTLSLHNNRLTGELSSSFRNCSQLRLLDLGKNALYGEIPTWMGESLSNLIVL 587 (833)
Q Consensus 508 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L 587 (833)
+++|++|++++|.++. ++ .+..+++|++|++++|.+++..+ +..+++|++|++++|++. .++ .+. .+++|++|
T Consensus 40 l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~-~~~-~~~-~l~~L~~L 112 (308)
T 1h6u_A 40 LDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLK-NVS-AIA-GLQSIKTL 112 (308)
T ss_dssp HHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCS-CCG-GGT-TCTTCCEE
T ss_pred cCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCC-Cch-hhc-CCCCCCEE
Confidence 4444555555554442 22 34445555555555555543322 555555555555555554 233 222 35555555
Q ss_pred EecCCcccccccccccCCCCCCEEeccCCcCcccCCccccccccccccCCCCcccccceEEeeccCcchhccccCcccEE
Q 048006 588 SLKSNKFHGKIPFQLCQLAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKDKLMLTWKGSEREYRSTLGLVKSL 667 (833)
Q Consensus 588 ~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L 667 (833)
++++|++++. + .+..+++|+.|++++|++++..+ +..+++ |+.|
T Consensus 113 ~l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~--------------------------------L~~L 156 (308)
T 1h6u_A 113 DLTSTQITDV-T-PLAGLSNLQVLYLDLNQITNISP--LAGLTN--------------------------------LQYL 156 (308)
T ss_dssp ECTTSCCCCC-G-GGTTCTTCCEEECCSSCCCCCGG--GGGCTT--------------------------------CCEE
T ss_pred ECCCCCCCCc-h-hhcCCCCCCEEECCCCccCcCcc--ccCCCC--------------------------------ccEE
Confidence 5555555532 2 25556666666666666653322 333333 3666
Q ss_pred EccCCcCCCCCchhhhcccCCcEEECCCccccccCCcccCCCCCCCEEeCCCCcCcccCCccccCCCCCCEEECcCCcCc
Q 048006 668 ELSNNNLNGAVPEEIMDLVGLVALNLSKNHLTGQISPKIGQLKSLDFLDLSRNQLVGGIPSSLSQLSGLSVMDLSYNNLS 747 (833)
Q Consensus 668 ~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~ 747 (833)
++++|++++. +. +..+++|++|++++|++++..+ +..+++|+.|++++|++++..| +..+++|+.|++++|+++
T Consensus 157 ~l~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~ 230 (308)
T 1h6u_A 157 SIGNAQVSDL-TP-LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTIT 230 (308)
T ss_dssp ECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEE
T ss_pred EccCCcCCCC-hh-hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeee
Confidence 6666666642 22 6666666666666666664332 6666667777777777664432 666667777777777765
Q ss_pred c
Q 048006 748 G 748 (833)
Q Consensus 748 g 748 (833)
+
T Consensus 231 ~ 231 (308)
T 1h6u_A 231 N 231 (308)
T ss_dssp C
T ss_pred c
Confidence 4
No 92
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.85 E-value=1.4e-20 Score=191.40 Aligned_cols=181 Identities=23% Similarity=0.220 Sum_probs=112.1
Q ss_pred CcccEEEcCCCcCcCCCCCcccCCCCCcEEEccCCcccccCCCCccCcCCccEEEcccCcCccccCccccCCCCCcEecc
Q 048006 485 SKLTYVDLSSNLLSGKLPDCWWTFDSLVILNLENNSFSGRIPDSMGFLQNIQTLSLHNNRLTGELSSSFRNCSQLRLLDL 564 (833)
Q Consensus 485 ~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 564 (833)
...++++++++.++ .+|..+. ++++.|++++|.+++..+..|..+++|++|++++|.+++..+..|..+++|++|++
T Consensus 14 ~~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 90 (251)
T 3m19_A 14 EGKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGL 90 (251)
T ss_dssp GGGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEEC
Confidence 34566666666666 3343332 35666666666666555555555555555555555555555555555555555555
Q ss_pred CCCccCCCCCcchhhcCCccceEEecCCcccccccccccCCCCCCEEeccCCcCcccCCccccccccccccCCCCccccc
Q 048006 565 GKNALYGEIPTWMGESLSNLIVLSLKSNKFHGKIPFQLCQLAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKD 644 (833)
Q Consensus 565 ~~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~ 644 (833)
++|+++ +..+..+..+++|++|+|++|++++..+..|..+++|
T Consensus 91 ~~n~l~-------------------------~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L------------ 133 (251)
T 3m19_A 91 ANNQLA-------------------------SLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKL------------ 133 (251)
T ss_dssp TTSCCC-------------------------CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC------------
T ss_pred CCCccc-------------------------ccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcc------------
Confidence 555554 3334444555666666666666654444444444444
Q ss_pred ceEEeeccCcchhccccCcccEEEccCCcCCCCCchhhhcccCCcEEECCCccccccCCcccCCCCCCCEEeCCCCcCcc
Q 048006 645 KLMLTWKGSEREYRSTLGLVKSLELSNNNLNGAVPEEIMDLVGLVALNLSKNHLTGQISPKIGQLKSLDFLDLSRNQLVG 724 (833)
Q Consensus 645 ~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 724 (833)
+.|+|++|++++..+..|..+++|++|+|++|++++..+..|..+++|+.|+|++|++.+
T Consensus 134 --------------------~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 193 (251)
T 3m19_A 134 --------------------KELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDC 193 (251)
T ss_dssp --------------------CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCT
T ss_pred --------------------cEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeC
Confidence 667777777765555567777888888888888887777778888888888888888876
Q ss_pred c
Q 048006 725 G 725 (833)
Q Consensus 725 ~ 725 (833)
.
T Consensus 194 ~ 194 (251)
T 3m19_A 194 S 194 (251)
T ss_dssp T
T ss_pred C
Confidence 5
No 93
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.85 E-value=1.3e-20 Score=197.64 Aligned_cols=194 Identities=21% Similarity=0.327 Sum_probs=127.6
Q ss_pred ccCCCCCCEEeCCCCCCCCCCccccccCCCCCCEEEccCCCCCCCCCcccCCccccceecccCccCCCCCCcccccCCCC
Q 048006 83 LLKLHDLRHLNLSFNDFSGSPIPEFIGSLSKLRYLDLFGTVFAGPIPPQLGNLSRLQHLDLGSNYLFSTGNLDWLSHLSY 162 (833)
Q Consensus 83 l~~l~~L~~L~Ls~n~~~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~ 162 (833)
+..+++|++|++++|.++. +| .+..+++|++|+|++|.+.+ ++. +..+++|++|++++|.+.. .+.+..+++
T Consensus 37 ~~~l~~L~~L~l~~~~i~~--l~-~~~~l~~L~~L~L~~n~i~~-~~~-~~~l~~L~~L~L~~n~l~~---~~~~~~l~~ 108 (308)
T 1h6u_A 37 QADLDGITTLSAFGTGVTT--IE-GVQYLNNLIGLELKDNQITD-LAP-LKNLTKITELELSGNPLKN---VSAIAGLQS 108 (308)
T ss_dssp HHHHHTCCEEECTTSCCCC--CT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCCSCCEEECCSCCCSC---CGGGTTCTT
T ss_pred HHHcCCcCEEEeeCCCccC--ch-hhhccCCCCEEEccCCcCCC-Chh-HccCCCCCEEEccCCcCCC---chhhcCCCC
Confidence 4467788888888888874 44 57788888888888888875 444 8888888888888888753 346777888
Q ss_pred CcEEecCCCCCCCCchhHHhhcCCCCCCEEEccCCCCCCCCCccccccccCCCCCEEEccCCcCCCCCCCcccccccCCc
Q 048006 163 LRYLNLDESNLANSSDWFQVIGKLHSLKTLSLHSCYLPPVIPLSLNHLNSSTSLETLVLSDNNLTSSIYPWLPNISSIFI 242 (833)
Q Consensus 163 L~~L~Ls~n~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~~L~ 242 (833)
|++|++++|.+++++ .+..+++|++|++++|.+.+..+ +..+++|+.|++++|.+++..+ +..+++ |+
T Consensus 109 L~~L~l~~n~l~~~~----~l~~l~~L~~L~l~~n~l~~~~~-----l~~l~~L~~L~l~~n~l~~~~~--l~~l~~-L~ 176 (308)
T 1h6u_A 109 IKTLDLTSTQITDVT----PLAGLSNLQVLYLDLNQITNISP-----LAGLTNLQYLSIGNAQVSDLTP--LANLSK-LT 176 (308)
T ss_dssp CCEEECTTSCCCCCG----GGTTCTTCCEEECCSSCCCCCGG-----GGGCTTCCEEECCSSCCCCCGG--GTTCTT-CC
T ss_pred CCEEECCCCCCCCch----hhcCCCCCCEEECCCCccCcCcc-----ccCCCCccEEEccCCcCCCChh--hcCCCC-CC
Confidence 888888888877742 36777777888777777766532 2223667777777766664322 445555 55
Q ss_pred EEEccCccccccccccccCCCCCcEEECcCCcccccccccccCCCCCcEEEccCCCCC
Q 048006 243 SIDLGFNQLQGSIPESFQHMVYLEHLRLSFNELEGGIPKFFGNMCSLITLNLSNNKLS 300 (833)
Q Consensus 243 ~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~ 300 (833)
.|++++|.+++..+ +..+++|++|++++|++++..+ +..+++|++|++++|.++
T Consensus 177 ~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~ 230 (308)
T 1h6u_A 177 TLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTIT 230 (308)
T ss_dssp EEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEE
T ss_pred EEECCCCccCcChh--hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeee
Confidence 55555555554322 5555555555555555554332 555555555555555544
No 94
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.85 E-value=1.7e-22 Score=220.07 Aligned_cols=205 Identities=19% Similarity=0.224 Sum_probs=96.1
Q ss_pred cCccccCCCCCCEEeCCCCCCCCCC---ccccccCCCCCCEEEccCCC---CCCCCCccc-------CCccccceecccC
Q 048006 79 ISPALLKLHDLRHLNLSFNDFSGSP---IPEFIGSLSKLRYLDLFGTV---FAGPIPPQL-------GNLSRLQHLDLGS 145 (833)
Q Consensus 79 ~~~~l~~l~~L~~L~Ls~n~~~~~~---~p~~~~~l~~L~~L~Ls~n~---l~~~~p~~~-------~~l~~L~~L~Ls~ 145 (833)
++..+..+++|++|+|++|.++... ++..+..+++|++|+|++|. +.+.+|..+ ..+++|++|+|++
T Consensus 24 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~ 103 (386)
T 2ca6_A 24 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD 103 (386)
T ss_dssp TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCS
T ss_pred HHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCC
Confidence 3455666677777777777666420 22335567777777777753 333444443 4555556666655
Q ss_pred ccCCCCC---CcccccCCCCCcEEecCCCCCCCC--chhHHhhcCCCCCCEEEccCCCCCCCCCccccccccCCCCCEEE
Q 048006 146 NYLFSTG---NLDWLSHLSYLRYLNLDESNLANS--SDWFQVIGKLHSLKTLSLHSCYLPPVIPLSLNHLNSSTSLETLV 220 (833)
Q Consensus 146 n~~~~~~---~~~~l~~l~~L~~L~Ls~n~~~~~--~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~ 220 (833)
|.+...+ .+..+.++++|++|++++|.++.. ..++..+..+. .+ ......++|++|+
T Consensus 104 n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~--------~~----------~~~~~~~~L~~L~ 165 (386)
T 2ca6_A 104 NAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELA--------VN----------KKAKNAPPLRSII 165 (386)
T ss_dssp CCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHH--------HH----------HHHHTCCCCCEEE
T ss_pred CcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHh--------hh----------hhcccCCCCcEEE
Confidence 5553211 112334444444444444444321 01122222220 00 0000003444444
Q ss_pred ccCCcCCC-CCC---CcccccccCCcEEEccCccccc-----cccccccCCCCCcEEECcCCccc----ccccccccCCC
Q 048006 221 LSDNNLTS-SIY---PWLPNISSIFISIDLGFNQLQG-----SIPESFQHMVYLEHLRLSFNELE----GGIPKFFGNMC 287 (833)
Q Consensus 221 Ls~n~l~~-~~~---~~l~~l~~~L~~L~Ls~n~l~~-----~~p~~~~~l~~L~~L~L~~n~l~----~~~p~~l~~l~ 287 (833)
+++|+++. .++ ..+..+++ |++|++++|.++. ..|..+..+++|++|+|++|.++ +.+|..+..++
T Consensus 166 L~~n~l~~~~~~~l~~~l~~~~~-L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~ 244 (386)
T 2ca6_A 166 CGRNRLENGSMKEWAKTFQSHRL-LHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWP 244 (386)
T ss_dssp CCSSCCTGGGHHHHHHHHHHCTT-CCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCT
T ss_pred CCCCCCCcHHHHHHHHHHHhCCC-cCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCC
Confidence 44444431 111 12233333 5555555555441 22334555666666666666654 34455555666
Q ss_pred CCcEEEccCCCCCch
Q 048006 288 SLITLNLSNNKLSGQ 302 (833)
Q Consensus 288 ~L~~L~Ls~n~l~~~ 302 (833)
+|++|+|++|.+++.
T Consensus 245 ~L~~L~L~~n~i~~~ 259 (386)
T 2ca6_A 245 NLRELGLNDCLLSAR 259 (386)
T ss_dssp TCCEEECTTCCCCHH
T ss_pred CcCEEECCCCCCchh
Confidence 666666666666544
No 95
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.83 E-value=2.4e-20 Score=209.63 Aligned_cols=210 Identities=26% Similarity=0.358 Sum_probs=143.2
Q ss_pred CCCCCCCCCCCCCCC-----cccce-EecCCCCcEEEEECCCCCCCCCCcceecCccccCCCCCCEEeCCCCCCCCCCcc
Q 048006 32 VLSSWGPEDEKRDCC-----KWTGL-RCSNKTNHVILLDLQPIDFDSFPLRGTISPALLKLHDLRHLNLSFNDFSGSPIP 105 (833)
Q Consensus 32 ~~~~w~~~~~~~~~c-----~w~gv-~c~~~~~~v~~l~L~~~~~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~p 105 (833)
.+.+|. .+.++| .|.|+ .|. .++++.|+|++ +.+++ +|..+. ++|++|+|++|.++. +|
T Consensus 32 ~l~~W~---~~~~~~~~~~~~~~~l~~C~--~~~L~~L~Ls~-----n~L~~-lp~~l~--~~L~~L~Ls~N~l~~--ip 96 (571)
T 3cvr_A 32 AWDKWE---KQALPGENRNEAVSLLKECL--INQFSELQLNR-----LNLSS-LPDNLP--PQITVLEITQNALIS--LP 96 (571)
T ss_dssp HHHHHH---TTCCTTCCHHHHHHHHHHHH--HTTCSEEECCS-----SCCSC-CCSCCC--TTCSEEECCSSCCSC--CC
T ss_pred HHHHHh---ccCCccccccchhhhccccc--cCCccEEEeCC-----CCCCc-cCHhHc--CCCCEEECcCCCCcc--cc
Confidence 456675 345667 79999 675 35788899988 56666 666553 789999999998883 66
Q ss_pred ccccCCCCCCEEEccCCCCCCCCCcccCCccccceecccCccCCCCCCcccccCCCCCcEEecCCCCCCCCchhHHhhcC
Q 048006 106 EFIGSLSKLRYLDLFGTVFAGPIPPQLGNLSRLQHLDLGSNYLFSTGNLDWLSHLSYLRYLNLDESNLANSSDWFQVIGK 185 (833)
Q Consensus 106 ~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~l~~ 185 (833)
..+++|++|+|++|.+++ +|. +.+ +|++|++++|.+..+ +. .+++|++|++++|.+++++. .
T Consensus 97 ---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~l--p~---~l~~L~~L~Ls~N~l~~lp~------~ 158 (571)
T 3cvr_A 97 ---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVDNNQLTML--PE---LPALLEYINADNNQLTMLPE------L 158 (571)
T ss_dssp ---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECCSSCCSCC--CC---CCTTCCEEECCSSCCSCCCC------C
T ss_pred ---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECCCCcCCCC--CC---cCccccEEeCCCCccCcCCC------c
Confidence 457888999999998886 776 655 788888888877541 11 45566666666666554321 2
Q ss_pred CCCCCEEEccCCCCCCCCCccccccccCCCCCEEEccCCcCCCCCCCcccccccCCcEEEccCccccccccccccCCCCC
Q 048006 186 LHSLKTLSLHSCYLPPVIPLSLNHLNSSTSLETLVLSDNNLTSSIYPWLPNISSIFISIDLGFNQLQGSIPESFQHMVYL 265 (833)
Q Consensus 186 l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~p~~~~~l~~L 265 (833)
+ ++|++|+|++|++++ +|. +. ++ |+.|+|++|.++ .+|. |.. +|
T Consensus 159 l---------------------------~~L~~L~Ls~N~L~~-lp~-l~--~~-L~~L~Ls~N~L~-~lp~-~~~--~L 202 (571)
T 3cvr_A 159 P---------------------------TSLEVLSVRNNQLTF-LPE-LP--ES-LEALDVSTNLLE-SLPA-VPV--RN 202 (571)
T ss_dssp C---------------------------TTCCEEECCSSCCSC-CCC-CC--TT-CCEEECCSSCCS-SCCC-CC-----
T ss_pred C---------------------------CCcCEEECCCCCCCC-cch-hh--CC-CCEEECcCCCCC-chhh-HHH--hh
Confidence 3 445555555555544 333 33 33 566666666665 3344 433 55
Q ss_pred -------cEEECcCCcccccccccccCCCCCcEEEccCCCCCchhhHHHhhcC
Q 048006 266 -------EHLRLSFNELEGGIPKFFGNMCSLITLNLSNNKLSGQLSEIIQNLS 311 (833)
Q Consensus 266 -------~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~ 311 (833)
++|+|++|+|+ .+|..+..+++|++|+|++|.+++.+|..+..+.
T Consensus 203 ~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~ 254 (571)
T 3cvr_A 203 HHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQT 254 (571)
T ss_dssp -----CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHH
T ss_pred hcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhh
Confidence 99999999998 4777788899999999999999999998888765
No 96
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.82 E-value=4.3e-20 Score=197.69 Aligned_cols=242 Identities=19% Similarity=0.186 Sum_probs=180.0
Q ss_pred ceeecCCCcccccccccccccCCcccEEEcCCCcCcCCCCCcccCCCCCcEEEccCCcccccCC-CCccCcCCccE-EEc
Q 048006 463 SFLNLSKNRFSGSISFLCSISGSKLTYVDLSSNLLSGKLPDCWWTFDSLVILNLENNSFSGRIP-DSMGFLQNIQT-LSL 540 (833)
Q Consensus 463 ~~L~l~~n~l~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~-L~L 540 (833)
+.++.++++++.....+ .+++++|++++|+|+...+.+|.++++|++|+|++|++.+.+| .+|.+++++++ +.+
T Consensus 12 ~~v~C~~~~Lt~iP~~l----~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~ 87 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDL----PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE 87 (350)
T ss_dssp TEEEEESTTCCSCCTTC----CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred CEEEecCCCCCccCcCc----CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence 45677777777543222 2679999999999997666789999999999999999876555 56888888765 667
Q ss_pred ccCcCccccCccccCCCCCcEeccCCCccCCCCCcchhhcCCccceEEecC-CcccccccccccCCC-CCCEEeccCCcC
Q 048006 541 HNNRLTGELSSSFRNCSQLRLLDLGKNALYGEIPTWMGESLSNLIVLSLKS-NKFHGKIPFQLCQLA-FLQVLDLSLNNI 618 (833)
Q Consensus 541 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~-N~l~~~~~~~l~~l~-~L~~L~Ls~N~l 618 (833)
++|+++...|..|..+++|++|++++|++. .+|...+....++..|++.+ +.+....+..+..+. .++.|++++|+|
T Consensus 88 ~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~-~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i 166 (350)
T 4ay9_X 88 KANNLLYINPEAFQNLPNLQYLLISNTGIK-HLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGI 166 (350)
T ss_dssp EETTCCEECTTSBCCCTTCCEEEEEEECCS-SCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCC
T ss_pred cCCcccccCchhhhhccccccccccccccc-cCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccc
Confidence 789999888899999999999999999998 56554443566788888866 567655556666664 588999999999
Q ss_pred cccCCccccccccccccCCCCcccccceEEeeccCcchhccccCcccEEEccC-CcCCCCCchhhhcccCCcEEECCCcc
Q 048006 619 SGKIPKCFNNFTAMTQERSSDPTIKDKLMLTWKGSEREYRSTLGLVKSLELSN-NNLNGAVPEEIMDLVGLVALNLSKNH 697 (833)
Q Consensus 619 ~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~-n~l~~~~p~~l~~l~~L~~L~Ls~N~ 697 (833)
+...+..| ...++ +.|++++ |.++...+..|..+++|++|||++|+
T Consensus 167 ~~i~~~~f-~~~~L--------------------------------~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~ 213 (350)
T 4ay9_X 167 QEIHNSAF-NGTQL--------------------------------DELNLSDNNNLEELPNDVFHGASGPVILDISRTR 213 (350)
T ss_dssp CEECTTSS-TTEEE--------------------------------EEEECTTCTTCCCCCTTTTTTEECCSEEECTTSC
T ss_pred cCCChhhc-cccch--------------------------------hHHhhccCCcccCCCHHHhccCcccchhhcCCCC
Confidence 85444444 23333 8899975 66664444568999999999999999
Q ss_pred ccccCCcccCCCCCCCEEeCCCCcCcccCCccccCCCCCCEEECcCCcC
Q 048006 698 LTGQISPKIGQLKSLDFLDLSRNQLVGGIPSSLSQLSGLSVMDLSYNNL 746 (833)
Q Consensus 698 l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l 746 (833)
|+...+..| .+|+.|.+.++.-...+| .+.++++|+.++++++.-
T Consensus 214 l~~lp~~~~---~~L~~L~~l~~~~l~~lP-~l~~l~~L~~l~l~~~~~ 258 (350)
T 4ay9_X 214 IHSLPSYGL---ENLKKLRARSTYNLKKLP-TLEKLVALMEASLTYPSH 258 (350)
T ss_dssp CCCCCSSSC---TTCCEEECTTCTTCCCCC-CTTTCCSCCEEECSCHHH
T ss_pred cCccChhhh---ccchHhhhccCCCcCcCC-CchhCcChhhCcCCCCcc
Confidence 995544444 556666665555445677 488899999999987643
No 97
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.82 E-value=1.6e-19 Score=193.34 Aligned_cols=241 Identities=18% Similarity=0.125 Sum_probs=169.3
Q ss_pred CceecccCcccccCCCCCCCCceeecCCCcccccccccccccCCcccEEEcCCCcCcCCCC-CcccCCCCCcE-EEccCC
Q 048006 442 PGIDISSNHFEGLIPPLPSNSSFLNLSKNRFSGSISFLCSISGSKLTYVDLSSNLLSGKLP-DCWWTFDSLVI-LNLENN 519 (833)
Q Consensus 442 ~~l~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~-~~~~~l~~L~~-L~Ls~N 519 (833)
++++.++++++......+.+++.|++++|+++.. +...+.++++|++|++++|++.+.+| ..|.+++++.+ +.+++|
T Consensus 12 ~~v~C~~~~Lt~iP~~l~~~l~~L~Ls~N~i~~i-~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N 90 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDLPRNAIELRFVLTKLRVI-QKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKAN 90 (350)
T ss_dssp TEEEEESTTCCSCCTTCCTTCSEEEEESCCCSEE-CTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEET
T ss_pred CEEEecCCCCCccCcCcCCCCCEEEccCCcCCCc-CHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCC
Confidence 5677888888766555677888888888888743 33333346888888888888866554 46778877665 566678
Q ss_pred cccccCCCCccCcCCccEEEcccCcCccccCccccCCCCCcEeccCCC-ccCCCCCcchhhcC-CccceEEecCCccccc
Q 048006 520 SFSGRIPDSMGFLQNIQTLSLHNNRLTGELSSSFRNCSQLRLLDLGKN-ALYGEIPTWMGESL-SNLIVLSLKSNKFHGK 597 (833)
Q Consensus 520 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~p~~~~~~l-~~L~~L~L~~N~l~~~ 597 (833)
+++...|..|..+++|++|++++|+++...+..+....++..|++.++ ++. .+|...+..+ ..++.|++++|+++.
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~-~l~~~~f~~~~~~l~~L~L~~N~i~~- 168 (350)
T 4ay9_X 91 NLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIH-TIERNSFVGLSFESVILWLNKNGIQE- 168 (350)
T ss_dssp TCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCC-EECTTSSTTSBSSCEEEECCSSCCCE-
T ss_pred cccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccc-cccccchhhcchhhhhhccccccccC-
Confidence 888777888888888888888888888777777777777888888664 454 6665443334 467888888888884
Q ss_pred ccccccCCCCCCEEeccC-CcCcccCCccccccccccccCCCCcccccceEEeeccCcchhccccCcccEEEccCCcCCC
Q 048006 598 IPFQLCQLAFLQVLDLSL-NNISGKIPKCFNNFTAMTQERSSDPTIKDKLMLTWKGSEREYRSTLGLVKSLELSNNNLNG 676 (833)
Q Consensus 598 ~~~~l~~l~~L~~L~Ls~-N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~ 676 (833)
+|.......+|+.+++++ |.+....+..|..+++| +.||+++|+|+.
T Consensus 169 i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L--------------------------------~~LdLs~N~l~~ 216 (350)
T 4ay9_X 169 IHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGP--------------------------------VILDISRTRIHS 216 (350)
T ss_dssp ECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECC--------------------------------SEEECTTSCCCC
T ss_pred CChhhccccchhHHhhccCCcccCCCHHHhccCccc--------------------------------chhhcCCCCcCc
Confidence 444444567788888875 55553334566766666 888888888884
Q ss_pred CCchhhhcccCCcEEECCCccccccCCcccCCCCCCCEEeCCCCc
Q 048006 677 AVPEEIMDLVGLVALNLSKNHLTGQISPKIGQLKSLDFLDLSRNQ 721 (833)
Q Consensus 677 ~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~ 721 (833)
+|. ..+.+|+.|.+.++.--..+| .+..+++|+.++++++.
T Consensus 217 -lp~--~~~~~L~~L~~l~~~~l~~lP-~l~~l~~L~~l~l~~~~ 257 (350)
T 4ay9_X 217 -LPS--YGLENLKKLRARSTYNLKKLP-TLEKLVALMEASLTYPS 257 (350)
T ss_dssp -CCS--SSCTTCCEEECTTCTTCCCCC-CTTTCCSCCEEECSCHH
T ss_pred -cCh--hhhccchHhhhccCCCcCcCC-CchhCcChhhCcCCCCc
Confidence 443 224556666655554334566 47788888888887754
No 98
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.82 E-value=2.6e-20 Score=184.77 Aligned_cols=159 Identities=22% Similarity=0.237 Sum_probs=137.3
Q ss_pred cEeccCCCccCCCCCcchhhcCCccceEEecCCccccccc-ccccCCCCCCEEeccCCcCcccCCccccccccccccCCC
Q 048006 560 RLLDLGKNALYGEIPTWMGESLSNLIVLSLKSNKFHGKIP-FQLCQLAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSS 638 (833)
Q Consensus 560 ~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~~-~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~ 638 (833)
+.+++++|.++ .+|..+. ..+++|++++|.+++..+ ..+..+++|+.|+|++|++++..+..|..+++|
T Consensus 14 ~~l~~s~n~l~-~iP~~~~---~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L------ 83 (220)
T 2v70_A 14 TTVDCSNQKLN-KIPEHIP---QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGV------ 83 (220)
T ss_dssp TEEECCSSCCS-SCCSCCC---TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTC------
T ss_pred CEeEeCCCCcc-cCccCCC---CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCC------
Confidence 47778888876 6776543 456788888888887644 457888999999999999987777777777666
Q ss_pred CcccccceEEeeccCcchhccccCcccEEEccCCcCCCCCchhhhcccCCcEEECCCccccccCCcccCCCCCCCEEeCC
Q 048006 639 DPTIKDKLMLTWKGSEREYRSTLGLVKSLELSNNNLNGAVPEEIMDLVGLVALNLSKNHLTGQISPKIGQLKSLDFLDLS 718 (833)
Q Consensus 639 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls 718 (833)
++|+|++|++++..+..|..+++|++|+|++|++++..|..|..+++|+.|+|+
T Consensus 84 --------------------------~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~ 137 (220)
T 2v70_A 84 --------------------------NEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLY 137 (220)
T ss_dssp --------------------------CEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECT
T ss_pred --------------------------CEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECC
Confidence 899999999998888889999999999999999999999999999999999999
Q ss_pred CCcCcccCCccccCCCCCCEEECcCCcCccCCCCcc
Q 048006 719 RNQLVGGIPSSLSQLSGLSVMDLSYNNLSGKIPTVT 754 (833)
Q Consensus 719 ~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~~ 754 (833)
+|++++..|..|..+++|++|++++|++.|.++...
T Consensus 138 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~~ 173 (220)
T 2v70_A 138 DNQITTVAPGAFDTLHSLSTLNLLANPFNCNCYLAW 173 (220)
T ss_dssp TSCCCCBCTTTTTTCTTCCEEECCSCCEECSGGGHH
T ss_pred CCcCCEECHHHhcCCCCCCEEEecCcCCcCCCchHH
Confidence 999999999999999999999999999999887543
No 99
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.82 E-value=8.8e-20 Score=179.80 Aligned_cols=128 Identities=24% Similarity=0.262 Sum_probs=63.4
Q ss_pred cEEEcCCCcCcCCCCCcccCCCCCcEEEccCCcccccCCCCccCcCCccEEEcccCcCccccCccccCCCCCcEeccCCC
Q 048006 488 TYVDLSSNLLSGKLPDCWWTFDSLVILNLENNSFSGRIPDSMGFLQNIQTLSLHNNRLTGELSSSFRNCSQLRLLDLGKN 567 (833)
Q Consensus 488 ~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 567 (833)
+.++.+++.++. +|..+ .++|++|++++|++++..+..|..+++|++|++++|++++..+..|..+++|++|++++|
T Consensus 10 ~~v~c~~~~l~~-~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n 86 (208)
T 2o6s_A 10 TTVECYSQGRTS-VPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN 86 (208)
T ss_dssp TEEECCSSCCSS-CCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEecCCCccC-CCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC
Confidence 345555555552 23222 235666666666665544444555555666666665555444444555555555555555
Q ss_pred ccCCCCCcchhhcCCccceEEecCCcccccccccccCCCCCCEEeccCCcCc
Q 048006 568 ALYGEIPTWMGESLSNLIVLSLKSNKFHGKIPFQLCQLAFLQVLDLSLNNIS 619 (833)
Q Consensus 568 ~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~ 619 (833)
+++ .+|...+..+++|++|++++|++++..+..+..+++|+.|++++|+++
T Consensus 87 ~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 137 (208)
T 2o6s_A 87 QLQ-SLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLK 137 (208)
T ss_dssp CCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred cCC-ccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccc
Confidence 554 333332223444444444444444333333444444444444444444
No 100
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.82 E-value=4.5e-20 Score=183.10 Aligned_cols=189 Identities=23% Similarity=0.260 Sum_probs=150.2
Q ss_pred cEeccCCCccCCCCCcchhhcCCccceEEecCCcccccccccccCCCCCCEEeccCCcCcccCCccccccccccccCCCC
Q 048006 560 RLLDLGKNALYGEIPTWMGESLSNLIVLSLKSNKFHGKIPFQLCQLAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSD 639 (833)
Q Consensus 560 ~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~ 639 (833)
+.++++++.++ .+|..+. +++++|++++|.+++..+..|..+++|+.|+|++|++++..|..|.++++|
T Consensus 14 ~~v~c~~~~l~-~iP~~l~---~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L------- 82 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNLP---ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSL------- 82 (220)
T ss_dssp TEEECTTSCCS-SCCSSCC---TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSC-------
T ss_pred CEEEcCCCCcC-cCCCccC---cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCC-------
Confidence 56778888877 7777543 578899999999987777788899999999999999988888888877766
Q ss_pred cccccceEEeeccCcchhccccCcccEEEccCCcCCCCCchhhhcccCCcEEECCCccccccCCcccCCCCCCCEEeCCC
Q 048006 640 PTIKDKLMLTWKGSEREYRSTLGLVKSLELSNNNLNGAVPEEIMDLVGLVALNLSKNHLTGQISPKIGQLKSLDFLDLSR 719 (833)
Q Consensus 640 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~ 719 (833)
+.|+|++|++++..+..|..+++|++|+|++|++++..|..|..+++|+.|+|++
T Consensus 83 -------------------------~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 137 (220)
T 2v9t_B 83 -------------------------NSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYD 137 (220)
T ss_dssp -------------------------CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred -------------------------CEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCC
Confidence 8999999999966666688999999999999999999899999999999999999
Q ss_pred CcCcccCCccccCCCCCCEEECcCCcCccCCCCccccCccccccccCCCCCCCCCCCCCCCCCCCCCCCCCcc
Q 048006 720 NQLVGGIPSSLSQLSGLSVMDLSYNNLSGKIPTVTQLQSFNDTVYAGNPELCGLPLPNKCRDEESAAGPGITE 792 (833)
Q Consensus 720 N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~l~~~~~~gn~~lc~~~~~~~c~~~~~~~~~~~~~ 792 (833)
|++++..+..|..+++|++|++++|++.+.+...+...++ ..++.. .....|..|...++....+
T Consensus 138 N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~l~~l~~~l-----~~~~~~---~~~~~C~~P~~l~g~~l~~ 202 (220)
T 2v9t_B 138 NKLQTIAKGTFSPLRAIQTMHLAQNPFICDCHLKWLADYL-----HTNPIE---TSGARCTSPRRLANKRIGQ 202 (220)
T ss_dssp SCCSCCCTTTTTTCTTCCEEECCSSCEECSGGGHHHHHHH-----HHCCCB---CSCCBEEESGGGTTCBGGG
T ss_pred CcCCEECHHHHhCCCCCCEEEeCCCCcCCCCccHHHHHHH-----HhCCCC---ccCCCcCCchHHcCCchhh
Confidence 9999888888999999999999999999876533221111 112211 1124577777776655543
No 101
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.81 E-value=8.8e-20 Score=179.81 Aligned_cols=174 Identities=23% Similarity=0.258 Sum_probs=97.3
Q ss_pred cEEEccCCcccccCCCCccCcCCccEEEcccCcCccccCccccCCCCCcEeccCCCccCCCCCcchhhcCCccceEEecC
Q 048006 512 VILNLENNSFSGRIPDSMGFLQNIQTLSLHNNRLTGELSSSFRNCSQLRLLDLGKNALYGEIPTWMGESLSNLIVLSLKS 591 (833)
Q Consensus 512 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~ 591 (833)
+.++.+++.++. +|..+ .++|++|++++|++++..+..|..+++|++|++++|+++
T Consensus 10 ~~v~c~~~~l~~-~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~--------------------- 65 (208)
T 2o6s_A 10 TTVECYSQGRTS-VPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ--------------------- 65 (208)
T ss_dssp TEEECCSSCCSS-CCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC---------------------
T ss_pred CEEEecCCCccC-CCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccC---------------------
Confidence 345555555552 23222 235555555555555444444455555555555555554
Q ss_pred CcccccccccccCCCCCCEEeccCCcCcccCCccccccccccccCCCCcccccceEEeeccCcchhccccCcccEEEccC
Q 048006 592 NKFHGKIPFQLCQLAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKDKLMLTWKGSEREYRSTLGLVKSLELSN 671 (833)
Q Consensus 592 N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~ 671 (833)
+..+..+..+++|++|++++|++++..+..|..+++| +.|++++
T Consensus 66 ----~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L--------------------------------~~L~L~~ 109 (208)
T 2o6s_A 66 ----SLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQL--------------------------------KELALNT 109 (208)
T ss_dssp ----CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC--------------------------------CEEECCS
T ss_pred ----ccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCC--------------------------------CEEEcCC
Confidence 3333334455555555555555554433344444433 5566666
Q ss_pred CcCCCCCchhhhcccCCcEEECCCccccccCCcccCCCCCCCEEeCCCCcCcccCCccccCCCCCCEEECcCCcCccCCC
Q 048006 672 NNLNGAVPEEIMDLVGLVALNLSKNHLTGQISPKIGQLKSLDFLDLSRNQLVGGIPSSLSQLSGLSVMDLSYNNLSGKIP 751 (833)
Q Consensus 672 n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip 751 (833)
|++++..+..+..+++|++|++++|++++..+..+..+++|+.|++++|.+.+. ++.|++|+++.|+++|.+|
T Consensus 110 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~L~~~~n~~~g~ip 182 (208)
T 2o6s_A 110 NQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKHSGVVR 182 (208)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCCC-------TTTTHHHHHHHHHCTTTBB
T ss_pred CcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeecC-------CCCHHHHHHHHHhCCceee
Confidence 666554455566666677777777777655555566677777777777766543 3456777777777777777
Q ss_pred C
Q 048006 752 T 752 (833)
Q Consensus 752 ~ 752 (833)
.
T Consensus 183 ~ 183 (208)
T 2o6s_A 183 N 183 (208)
T ss_dssp C
T ss_pred c
Confidence 5
No 102
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.81 E-value=1.5e-19 Score=203.11 Aligned_cols=188 Identities=24% Similarity=0.353 Sum_probs=129.4
Q ss_pred CcccEEEcCCCcCcCCCCCcccCCCCCcEEEccCCcccccCCCCccCcCCccEEEcccCcCccccCccccCCCCCcEecc
Q 048006 485 SKLTYVDLSSNLLSGKLPDCWWTFDSLVILNLENNSFSGRIPDSMGFLQNIQTLSLHNNRLTGELSSSFRNCSQLRLLDL 564 (833)
Q Consensus 485 ~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 564 (833)
.+++.|++++|.+++ +|..+ .++|++|++++|.++ .+| ..+++|++|++++|++++ +|. +.. +|++|++
T Consensus 59 ~~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~L 127 (571)
T 3cvr_A 59 NQFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDV 127 (571)
T ss_dssp TTCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEEC
T ss_pred CCccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEEC
Confidence 478888888888886 55544 367888888888888 455 346788888888888886 555 544 7888888
Q ss_pred CCCccCCCCCcchhhcCCccceEEecCCcccccccccccCCCCCCEEeccCCcCcccCCccccccccccccCCCCccccc
Q 048006 565 GKNALYGEIPTWMGESLSNLIVLSLKSNKFHGKIPFQLCQLAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKD 644 (833)
Q Consensus 565 ~~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~ 644 (833)
++|++++ +|. .+++|++|++++|.+++ +|. .+++|+.|+|++|++++ +|. |. ++
T Consensus 128 s~N~l~~-lp~----~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~------------- 181 (571)
T 3cvr_A 128 DNNQLTM-LPE----LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ES------------- 181 (571)
T ss_dssp CSSCCSC-CCC----CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TT-------------
T ss_pred CCCcCCC-CCC----cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CC-------------
Confidence 8888874 666 36778888888888775 554 46777777777777765 444 33 33
Q ss_pred ceEEeeccCcchhccccCcccEEEccCCcCCCCCchhhhcccCC-------cEEECCCccccccCCcccCCCCCCCEEeC
Q 048006 645 KLMLTWKGSEREYRSTLGLVKSLELSNNNLNGAVPEEIMDLVGL-------VALNLSKNHLTGQISPKIGQLKSLDFLDL 717 (833)
Q Consensus 645 ~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L-------~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L 717 (833)
|+.|+|++|+|+ .+|. +.. +| +.|+|++|+|+ .+|..+..+++|+.|+|
T Consensus 182 -------------------L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L 237 (571)
T 3cvr_A 182 -------------------LEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIIL 237 (571)
T ss_dssp -------------------CCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEEC
T ss_pred -------------------CCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEe
Confidence 377777777777 5555 443 55 77777777776 46666666777777777
Q ss_pred CCCcCcccCCccccCC
Q 048006 718 SRNQLVGGIPSSLSQL 733 (833)
Q Consensus 718 s~N~l~~~~p~~l~~l 733 (833)
++|++++.+|..+..+
T Consensus 238 ~~N~l~~~~p~~l~~l 253 (571)
T 3cvr_A 238 EDNPLSSRIRESLSQQ 253 (571)
T ss_dssp CSSSCCHHHHHHHHHH
T ss_pred eCCcCCCcCHHHHHHh
Confidence 7777777666666554
No 103
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.79 E-value=2.5e-19 Score=192.60 Aligned_cols=180 Identities=27% Similarity=0.261 Sum_probs=115.6
Q ss_pred cEEEcccCcCccccCccccCCCCCcEeccCCCccCCCCCcchhh-cCCccceEEecCCcccccccccccCCCCCCEEecc
Q 048006 536 QTLSLHNNRLTGELSSSFRNCSQLRLLDLGKNALYGEIPTWMGE-SLSNLIVLSLKSNKFHGKIPFQLCQLAFLQVLDLS 614 (833)
Q Consensus 536 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~-~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls 614 (833)
+.++++++.++. +|..+. +.++.|+|++|+++ .++...+. .+++|++|+|++|++++..+..|..+++|++|+|+
T Consensus 21 ~~l~c~~~~l~~-iP~~~~--~~l~~L~Ls~N~l~-~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls 96 (361)
T 2xot_A 21 NILSCSKQQLPN-VPQSLP--SYTALLDLSHNNLS-RLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLS 96 (361)
T ss_dssp TEEECCSSCCSS-CCSSCC--TTCSEEECCSSCCC-EECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CEEEeCCCCcCc-cCccCC--CCCCEEECCCCCCC-ccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECC
Confidence 567777777773 444332 34677777777776 34443332 56777777777777776666667777777777777
Q ss_pred CCcCcccCCccccccccccccCCCCcccccceEEeeccCcchhccccCcccEEEccCCcCCCCCchhhhcccCCcEEECC
Q 048006 615 LNNISGKIPKCFNNFTAMTQERSSDPTIKDKLMLTWKGSEREYRSTLGLVKSLELSNNNLNGAVPEEIMDLVGLVALNLS 694 (833)
Q Consensus 615 ~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls 694 (833)
+|++++..+..|..+++| +.|+|++|++++..|..|..+++|++|+|+
T Consensus 97 ~N~l~~~~~~~~~~l~~L--------------------------------~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~ 144 (361)
T 2xot_A 97 SNHLHTLDEFLFSDLQAL--------------------------------EVLLLYNNHIVVVDRNAFEDMAQLQKLYLS 144 (361)
T ss_dssp SSCCCEECTTTTTTCTTC--------------------------------CEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCcCCcCCHHHhCCCcCC--------------------------------CEEECCCCcccEECHHHhCCcccCCEEECC
Confidence 777765555555555544 677777777776666677777777777777
Q ss_pred CccccccCCccc---CCCCCCCEEeCCCCcCcccCCccccCCCC--CCEEECcCCcCccCCC
Q 048006 695 KNHLTGQISPKI---GQLKSLDFLDLSRNQLVGGIPSSLSQLSG--LSVMDLSYNNLSGKIP 751 (833)
Q Consensus 695 ~N~l~~~~p~~l---~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~--L~~L~ls~N~l~g~ip 751 (833)
+|+|++..+..| ..+++|+.|||++|+|++..+..+..++. ++.|++++|++.+.+.
T Consensus 145 ~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C~C~ 206 (361)
T 2xot_A 145 QNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLECDCK 206 (361)
T ss_dssp SSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEECCHH
T ss_pred CCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCccCCcC
Confidence 777774433334 45677777777777777555555666655 3667777777766543
No 104
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.77 E-value=2.2e-18 Score=172.09 Aligned_cols=158 Identities=24% Similarity=0.229 Sum_probs=136.0
Q ss_pred CcEeccCCCccCCCCCcchhhcCCccceEEecCCcccccccccccCCCCCCEEeccCCcCcccCCccccccccccccCCC
Q 048006 559 LRLLDLGKNALYGEIPTWMGESLSNLIVLSLKSNKFHGKIPFQLCQLAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSS 638 (833)
Q Consensus 559 L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~ 638 (833)
-+.++.+++.+. .+|..+ .++|++|+|++|.+++..|..+..+++|+.|+|++|++....+..|..+++|
T Consensus 21 ~~~v~c~~~~l~-~ip~~~---~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L------ 90 (229)
T 3e6j_A 21 GTTVDCRSKRHA-SVPAGI---PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQL------ 90 (229)
T ss_dssp TTEEECTTSCCS-SCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC------
T ss_pred CCEeEccCCCcC-ccCCCC---CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCc------
Confidence 456778888776 777754 3788899999999988888888899999999999999976655666666665
Q ss_pred CcccccceEEeeccCcchhccccCcccEEEccCCcCCCCCchhhhcccCCcEEECCCccccccCCcccCCCCCCCEEeCC
Q 048006 639 DPTIKDKLMLTWKGSEREYRSTLGLVKSLELSNNNLNGAVPEEIMDLVGLVALNLSKNHLTGQISPKIGQLKSLDFLDLS 718 (833)
Q Consensus 639 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls 718 (833)
+.|+|++|++++..+..|..+++|++|+|++|+++ .+|..+..+++|+.|+|+
T Consensus 91 --------------------------~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~ 143 (229)
T 3e6j_A 91 --------------------------TVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALD 143 (229)
T ss_dssp --------------------------CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECC
T ss_pred --------------------------CEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECC
Confidence 89999999999777777899999999999999999 788999999999999999
Q ss_pred CCcCcccCCccccCCCCCCEEECcCCcCccCCCCc
Q 048006 719 RNQLVGGIPSSLSQLSGLSVMDLSYNNLSGKIPTV 753 (833)
Q Consensus 719 ~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~ 753 (833)
+|++++..+..+..+++|+.|++++|++.|.++..
T Consensus 144 ~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~~ 178 (229)
T 3e6j_A 144 QNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECRDI 178 (229)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBGGG
T ss_pred CCcCCccCHHHHhCCCCCCEEEeeCCCccCCcchh
Confidence 99999887788999999999999999999988743
No 105
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.77 E-value=1.6e-18 Score=171.80 Aligned_cols=157 Identities=23% Similarity=0.316 Sum_probs=139.0
Q ss_pred cceEEecCCcccccccccccCCCCCCEEeccCCcCcccCCccccccccccccCCCCcccccceEEeeccCcchhccccCc
Q 048006 584 LIVLSLKSNKFHGKIPFQLCQLAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKDKLMLTWKGSEREYRSTLGL 663 (833)
Q Consensus 584 L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 663 (833)
-+.++++++.++ .+|..+. ++|+.|++++|++++..+..|..+++|
T Consensus 13 ~~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L------------------------------- 58 (220)
T 2v9t_B 13 NNIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKL------------------------------- 58 (220)
T ss_dssp TTEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTC-------------------------------
T ss_pred CCEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCC-------------------------------
Confidence 367899999988 5676654 789999999999998777778777666
Q ss_pred ccEEEccCCcCCCCCchhhhcccCCcEEECCCccccccCCcccCCCCCCCEEeCCCCcCcccCCccccCCCCCCEEECcC
Q 048006 664 VKSLELSNNNLNGAVPEEIMDLVGLVALNLSKNHLTGQISPKIGQLKSLDFLDLSRNQLVGGIPSSLSQLSGLSVMDLSY 743 (833)
Q Consensus 664 L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~ 743 (833)
+.|+|++|++++..|..|.++++|++|+|++|+|++..+..|..+++|+.|+|++|++++..|..|..+++|++|++++
T Consensus 59 -~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 137 (220)
T 2v9t_B 59 -RRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYD 137 (220)
T ss_dssp -CEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred -CEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCC
Confidence 9999999999988899999999999999999999977667789999999999999999999999999999999999999
Q ss_pred CcCccCCCC-ccccCccccccccCCCCCCCCCC
Q 048006 744 NNLSGKIPT-VTQLQSFNDTVYAGNPELCGLPL 775 (833)
Q Consensus 744 N~l~g~ip~-~~~~~~l~~~~~~gn~~lc~~~~ 775 (833)
|++++..+. ...+..+..+.+.+||+.|+|.+
T Consensus 138 N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~l 170 (220)
T 2v9t_B 138 NKLQTIAKGTFSPLRAIQTMHLAQNPFICDCHL 170 (220)
T ss_dssp SCCSCCCTTTTTTCTTCCEEECCSSCEECSGGG
T ss_pred CcCCEECHHHHhCCCCCCEEEeCCCCcCCCCcc
Confidence 999987775 35567788889999999999874
No 106
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.77 E-value=2.9e-18 Score=178.01 Aligned_cols=170 Identities=26% Similarity=0.334 Sum_probs=90.9
Q ss_pred cCCccEEEcccCcCccccCccccCCCCCcEeccCCCccCCCCCcchhhcCCccceEEecCCcccccccccccCCCCCCEE
Q 048006 532 LQNIQTLSLHNNRLTGELSSSFRNCSQLRLLDLGKNALYGEIPTWMGESLSNLIVLSLKSNKFHGKIPFQLCQLAFLQVL 611 (833)
Q Consensus 532 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L 611 (833)
+++|++|++++|.+... + .+..+++|++|++++|+++ .++. +. .+++|++|++++|.+++ ++ .+..+++|++|
T Consensus 45 l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~-~~~~-l~-~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L 117 (291)
T 1h6t_A 45 LNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLT-DIKP-LA-NLKNLGWLFLDENKVKD-LS-SLKDLKKLKSL 117 (291)
T ss_dssp HHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCC-CCGG-GT-TCTTCCEEECCSSCCCC-GG-GGTTCTTCCEE
T ss_pred cCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccC-CCcc-cc-cCCCCCEEECCCCcCCC-Ch-hhccCCCCCEE
Confidence 33444444444444322 1 2344444444444444444 2222 22 34455555555554443 12 25555666666
Q ss_pred eccCCcCcccCCccccccccccccCCCCcccccceEEeeccCcchhccccCcccEEEccCCcCCCCCchhhhcccCCcEE
Q 048006 612 DLSLNNISGKIPKCFNNFTAMTQERSSDPTIKDKLMLTWKGSEREYRSTLGLVKSLELSNNNLNGAVPEEIMDLVGLVAL 691 (833)
Q Consensus 612 ~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L 691 (833)
++++|++.+. ..+..+++ |+.|++++|++++. ..+..+++|++|
T Consensus 118 ~L~~n~i~~~--~~l~~l~~--------------------------------L~~L~l~~n~l~~~--~~l~~l~~L~~L 161 (291)
T 1h6t_A 118 SLEHNGISDI--NGLVHLPQ--------------------------------LESLYLGNNKITDI--TVLSRLTKLDTL 161 (291)
T ss_dssp ECTTSCCCCC--GGGGGCTT--------------------------------CCEEECCSSCCCCC--GGGGGCTTCSEE
T ss_pred ECCCCcCCCC--hhhcCCCC--------------------------------CCEEEccCCcCCcc--hhhccCCCCCEE
Confidence 6666665532 22333322 36666666666643 456666777777
Q ss_pred ECCCccccccCCcccCCCCCCCEEeCCCCcCcccCCccccCCCCCCEEECcCCcCcc
Q 048006 692 NLSKNHLTGQISPKIGQLKSLDFLDLSRNQLVGGIPSSLSQLSGLSVMDLSYNNLSG 748 (833)
Q Consensus 692 ~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g 748 (833)
++++|++++..| +..+++|+.|++++|++++. | .+..+++|+.|++++|+++.
T Consensus 162 ~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~l-~-~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 162 SLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL-R-ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp ECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC-G-GGTTCTTCSEEEEEEEEEEC
T ss_pred EccCCccccchh--hcCCCccCEEECCCCcCCCC-h-hhccCCCCCEEECcCCcccC
Confidence 777777765443 66677777777777777643 3 36677777777777777664
No 107
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.76 E-value=4.6e-18 Score=168.57 Aligned_cols=156 Identities=19% Similarity=0.183 Sum_probs=110.6
Q ss_pred EEEcccCcCccccCccccCCCCCcEeccCCCccCCCCCcchhhcCCccceEEecCCcccccccccccCCCCCCEEeccCC
Q 048006 537 TLSLHNNRLTGELSSSFRNCSQLRLLDLGKNALYGEIPTWMGESLSNLIVLSLKSNKFHGKIPFQLCQLAFLQVLDLSLN 616 (833)
Q Consensus 537 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N 616 (833)
++++++|.++. +|..+. +.+++|++++|++++..|...+..+++|++|+|++|++++..+..|.++++|++|+|++|
T Consensus 15 ~l~~s~n~l~~-iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 91 (220)
T 2v70_A 15 TVDCSNQKLNK-IPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN 91 (220)
T ss_dssp EEECCSSCCSS-CCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred EeEeCCCCccc-CccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC
Confidence 44555555442 333221 234556666666653333333335667777777777777666667777888888888888
Q ss_pred cCcccCCccccccccccccCCCCcccccceEEeeccCcchhccccCcccEEEccCCcCCCCCchhhhcccCCcEEECCCc
Q 048006 617 NISGKIPKCFNNFTAMTQERSSDPTIKDKLMLTWKGSEREYRSTLGLVKSLELSNNNLNGAVPEEIMDLVGLVALNLSKN 696 (833)
Q Consensus 617 ~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N 696 (833)
++++..|..|..+++| ++|+|++|++++..|..|..+++|++|+|++|
T Consensus 92 ~l~~~~~~~~~~l~~L--------------------------------~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N 139 (220)
T 2v70_A 92 RLENVQHKMFKGLESL--------------------------------KTLMLRSNRITCVGNDSFIGLSSVRLLSLYDN 139 (220)
T ss_dssp CCCCCCGGGGTTCSSC--------------------------------CEEECTTSCCCCBCTTSSTTCTTCSEEECTTS
T ss_pred ccCccCHhHhcCCcCC--------------------------------CEEECCCCcCCeECHhHcCCCccCCEEECCCC
Confidence 8877666667666655 78888888888777888888899999999999
Q ss_pred cccccCCcccCCCCCCCEEeCCCCcCcccCC
Q 048006 697 HLTGQISPKIGQLKSLDFLDLSRNQLVGGIP 727 (833)
Q Consensus 697 ~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p 727 (833)
++++..|..|..+++|+.|+|++|++.+..+
T Consensus 140 ~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 170 (220)
T 2v70_A 140 QITTVAPGAFDTLHSLSTLNLLANPFNCNCY 170 (220)
T ss_dssp CCCCBCTTTTTTCTTCCEEECCSCCEECSGG
T ss_pred cCCEECHHHhcCCCCCCEEEecCcCCcCCCc
Confidence 9998888899999999999999999886543
No 108
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.75 E-value=1.4e-18 Score=186.73 Aligned_cols=177 Identities=27% Similarity=0.255 Sum_probs=145.1
Q ss_pred cEEEccCCcccccCCCCccCcCCccEEEcccCcCccccCcccc-CCCCCcEeccCCCccCCCCCcchhhcCCccceEEec
Q 048006 512 VILNLENNSFSGRIPDSMGFLQNIQTLSLHNNRLTGELSSSFR-NCSQLRLLDLGKNALYGEIPTWMGESLSNLIVLSLK 590 (833)
Q Consensus 512 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~ 590 (833)
+.++++++.++. +|..+. +.++.|+|++|++++..+..|. .+++|++|+|++|+++ .++...+..+++|++|+|+
T Consensus 21 ~~l~c~~~~l~~-iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~-~i~~~~~~~l~~L~~L~Ls 96 (361)
T 2xot_A 21 NILSCSKQQLPN-VPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDLS 96 (361)
T ss_dssp TEEECCSSCCSS-CCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECC
T ss_pred CEEEeCCCCcCc-cCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCC-ccChhhccCCCCCCEEECC
Confidence 688999999884 565543 4689999999999988888887 8999999999999998 5554434478999999999
Q ss_pred CCcccccccccccCCCCCCEEeccCCcCcccCCccccccccccccCCCCcccccceEEeeccCcchhccccCcccEEEcc
Q 048006 591 SNKFHGKIPFQLCQLAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKDKLMLTWKGSEREYRSTLGLVKSLELS 670 (833)
Q Consensus 591 ~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls 670 (833)
+|++++..+..|..+++|+.|+|++|++.+..|..|..+++| +.|+|+
T Consensus 97 ~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L--------------------------------~~L~L~ 144 (361)
T 2xot_A 97 SNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQL--------------------------------QKLYLS 144 (361)
T ss_dssp SSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTC--------------------------------CEEECC
T ss_pred CCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccC--------------------------------CEEECC
Confidence 999998777789999999999999999988878888777766 899999
Q ss_pred CCcCCCCCchhh---hcccCCcEEECCCccccccCCcccCCCCC--CCEEeCCCCcCcc
Q 048006 671 NNNLNGAVPEEI---MDLVGLVALNLSKNHLTGQISPKIGQLKS--LDFLDLSRNQLVG 724 (833)
Q Consensus 671 ~n~l~~~~p~~l---~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~--L~~L~Ls~N~l~~ 724 (833)
+|++++..+..| ..+++|+.|+|++|+|++..+..+..++. ++.|+|++|++..
T Consensus 145 ~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C 203 (361)
T 2xot_A 145 QNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLEC 203 (361)
T ss_dssp SSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEEC
T ss_pred CCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCccC
Confidence 999996544445 57899999999999999766677887876 4889999999874
No 109
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.75 E-value=5.4e-18 Score=175.95 Aligned_cols=173 Identities=22% Similarity=0.267 Sum_probs=99.3
Q ss_pred ccCCCCCCEEeCCCCCCCCCCccccccCCCCCCEEEccCCCCCCCCCcccCCccccceecccCccCCCCCCcccccCCCC
Q 048006 83 LLKLHDLRHLNLSFNDFSGSPIPEFIGSLSKLRYLDLFGTVFAGPIPPQLGNLSRLQHLDLGSNYLFSTGNLDWLSHLSY 162 (833)
Q Consensus 83 l~~l~~L~~L~Ls~n~~~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~ 162 (833)
+..+++|++|++++|.++. ++ .+..+++|++|+|++|.+.+..| +.++++|++|++++|.+.. ++.+..+++
T Consensus 42 ~~~l~~L~~L~l~~~~i~~--~~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~---~~~l~~l~~ 113 (291)
T 1h6t_A 42 QNELNSIDQIIANNSDIKS--VQ-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD---LSSLKDLKK 113 (291)
T ss_dssp HHHHHTCCEEECTTSCCCC--CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC---GGGGTTCTT
T ss_pred hhhcCcccEEEccCCCccc--Ch-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC---ChhhccCCC
Confidence 3456667777777777664 33 36667777777777777764333 6667777777777766632 344566666
Q ss_pred CcEEecCCCCCCCCchhHHhhcCCCCCCEEEccCCCCCCCCCccccccccCCCCCEEEccCCcCCCCCCCcccccccCCc
Q 048006 163 LRYLNLDESNLANSSDWFQVIGKLHSLKTLSLHSCYLPPVIPLSLNHLNSSTSLETLVLSDNNLTSSIYPWLPNISSIFI 242 (833)
Q Consensus 163 L~~L~Ls~n~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~~L~ 242 (833)
|++|++++|.++++ ..+..+++|++|++++|.+.+. +.+..+++ |+
T Consensus 114 L~~L~L~~n~i~~~----~~l~~l~~L~~L~l~~n~l~~~-----------------------------~~l~~l~~-L~ 159 (291)
T 1h6t_A 114 LKSLSLEHNGISDI----NGLVHLPQLESLYLGNNKITDI-----------------------------TVLSRLTK-LD 159 (291)
T ss_dssp CCEEECTTSCCCCC----GGGGGCTTCCEEECCSSCCCCC-----------------------------GGGGGCTT-CS
T ss_pred CCEEECCCCcCCCC----hhhcCCCCCCEEEccCCcCCcc-----------------------------hhhccCCC-CC
Confidence 66666666665553 2344555555555555555443 23344444 55
Q ss_pred EEEccCccccccccccccCCCCCcEEECcCCcccccccccccCCCCCcEEEccCCCCCc
Q 048006 243 SIDLGFNQLQGSIPESFQHMVYLEHLRLSFNELEGGIPKFFGNMCSLITLNLSNNKLSG 301 (833)
Q Consensus 243 ~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~ 301 (833)
+|++++|.+++..+ +..+++|++|++++|.+++. + .+..+++|+.|++++|+++.
T Consensus 160 ~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~l-~-~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 160 TLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL-R-ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp EEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC-G-GGTTCTTCSEEEEEEEEEEC
T ss_pred EEEccCCccccchh--hcCCCccCEEECCCCcCCCC-h-hhccCCCCCEEECcCCcccC
Confidence 55555555554333 55666666666666666542 2 25666666666666666554
No 110
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.74 E-value=3.2e-18 Score=194.77 Aligned_cols=126 Identities=24% Similarity=0.271 Sum_probs=66.1
Q ss_pred CcccEEEcCCCcCcCCCCCcccCCCCCcEEEccCCcccccCCCCccCcCCccEEEcccCcCccccCccccCCCCCcEecc
Q 048006 485 SKLTYVDLSSNLLSGKLPDCWWTFDSLVILNLENNSFSGRIPDSMGFLQNIQTLSLHNNRLTGELSSSFRNCSQLRLLDL 564 (833)
Q Consensus 485 ~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 564 (833)
+.|+.|++++|.+... + .+..+++|+.|+|++|.+++..+ +..+++|+.|+|++|.+++. + .+..+++|+.|+|
T Consensus 43 ~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l-~-~l~~l~~L~~L~L 116 (605)
T 1m9s_A 43 NSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDL-S-SLKDLKKLKSLSL 116 (605)
T ss_dssp TTCCCCBCTTCCCCCC-T-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCC-T-TSTTCTTCCEEEC
T ss_pred CCCCEEECcCCCCCCC-h-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCCC-h-hhccCCCCCEEEe
Confidence 5555566666655532 2 35555566666666665554433 55555566666666555532 2 4555555555555
Q ss_pred CCCccCCCCCcchhhcCCccceEEecCCcccccccccccCCCCCCEEeccCCcCccc
Q 048006 565 GKNALYGEIPTWMGESLSNLIVLSLKSNKFHGKIPFQLCQLAFLQVLDLSLNNISGK 621 (833)
Q Consensus 565 ~~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~ 621 (833)
++|++. .++. +. .+++|+.|+|++|.+++. ..+..+++|+.|+|++|++.+.
T Consensus 117 s~N~l~-~l~~-l~-~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~ 168 (605)
T 1m9s_A 117 EHNGIS-DING-LV-HLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDI 168 (605)
T ss_dssp TTSCCC-CCGG-GG-GCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCC
T ss_pred cCCCCC-CCcc-cc-CCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCc
Confidence 555555 2322 22 355555555555555533 3445555555555555555443
No 111
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.74 E-value=4.1e-18 Score=165.01 Aligned_cols=164 Identities=19% Similarity=0.248 Sum_probs=121.9
Q ss_pred ceEEecCCcccccccccccCCCCCCEEeccCCcCcccCCc-cccccccccccCCCCcccccceEEeeccCcchhccccCc
Q 048006 585 IVLSLKSNKFHGKIPFQLCQLAFLQVLDLSLNNISGKIPK-CFNNFTAMTQERSSDPTIKDKLMLTWKGSEREYRSTLGL 663 (833)
Q Consensus 585 ~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~-~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 663 (833)
+++++++|.++ .+|..+.. +|+.|++++|++.+..+. .|..+++|
T Consensus 11 ~~l~~s~~~l~-~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L------------------------------- 56 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHL------------------------------- 56 (192)
T ss_dssp TEEECTTSCCS-SCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTC-------------------------------
T ss_pred CEEEcCCCCcC-cCccCCCC--CCCEEECCCCcCCccCCccccccCCCC-------------------------------
Confidence 45666666664 44544432 677777777777655543 35555555
Q ss_pred ccEEEccCCcCCCCCchhhhcccCCcEEECCCccccccCCcccCCCCCCCEEeCCCCcCcccCCccccCCCCCCEEECcC
Q 048006 664 VKSLELSNNNLNGAVPEEIMDLVGLVALNLSKNHLTGQISPKIGQLKSLDFLDLSRNQLVGGIPSSLSQLSGLSVMDLSY 743 (833)
Q Consensus 664 L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~ 743 (833)
+.|+|++|++++..|..|..+++|++|+|++|+|++..|..|..+++|++|+|++|++++.+|..+..+++|++|++++
T Consensus 57 -~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 135 (192)
T 1w8a_A 57 -VKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLAS 135 (192)
T ss_dssp -CEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTT
T ss_pred -CEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCC
Confidence 8888888888888888899999999999999999988888899999999999999999999999999999999999999
Q ss_pred CcCccCCCCccccCccccccccCCCCCCCCCCCCCCCCCCCCCCCCCc
Q 048006 744 NNLSGKIPTVTQLQSFNDTVYAGNPELCGLPLPNKCRDEESAAGPGIT 791 (833)
Q Consensus 744 N~l~g~ip~~~~~~~l~~~~~~gn~~lc~~~~~~~c~~~~~~~~~~~~ 791 (833)
|+++|.++......++....+.++... |..|...++....
T Consensus 136 N~l~c~c~l~~~~~~l~~~~~~~~~~~--------C~~P~~l~~~~l~ 175 (192)
T 1w8a_A 136 NPFNCNCHLAWFAEWLRKKSLNGGAAR--------CGAPSKVRDVQIK 175 (192)
T ss_dssp CCBCCSGGGHHHHHHHHHHCCSGGGCB--------BCSSTTTTTSBGG
T ss_pred CCccCcCcchHHHHHHHHcCCCCCCCC--------CCCChHHcCCChh
Confidence 999998875543333433344454443 4455555554443
No 112
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.74 E-value=1.8e-17 Score=165.56 Aligned_cols=156 Identities=25% Similarity=0.306 Sum_probs=137.2
Q ss_pred ccceEEecCCcccccccccccCCCCCCEEeccCCcCcccCCccccccccccccCCCCcccccceEEeeccCcchhccccC
Q 048006 583 NLIVLSLKSNKFHGKIPFQLCQLAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKDKLMLTWKGSEREYRSTLG 662 (833)
Q Consensus 583 ~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 662 (833)
+.+.++.+++.+. .+|..+. ++|++|+|++|.+++..|..|..+++|
T Consensus 20 s~~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L------------------------------ 66 (229)
T 3e6j_A 20 SGTTVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINL------------------------------ 66 (229)
T ss_dssp ETTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTC------------------------------
T ss_pred eCCEeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCC------------------------------
Confidence 4678999999987 5666554 899999999999998888888877776
Q ss_pred cccEEEccCCcCCCCCchhhhcccCCcEEECCCccccccCCcccCCCCCCCEEeCCCCcCcccCCccccCCCCCCEEECc
Q 048006 663 LVKSLELSNNNLNGAVPEEIMDLVGLVALNLSKNHLTGQISPKIGQLKSLDFLDLSRNQLVGGIPSSLSQLSGLSVMDLS 742 (833)
Q Consensus 663 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls 742 (833)
+.|+|++|++++..+..|..+++|++|+|++|+|++..+..|..+++|+.|+|++|+++ .+|..+..+++|++|+++
T Consensus 67 --~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~ 143 (229)
T 3e6j_A 67 --KELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALD 143 (229)
T ss_dssp --CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECC
T ss_pred --cEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECC
Confidence 99999999998666677899999999999999999887888999999999999999999 789999999999999999
Q ss_pred CCcCccCCCC-ccccCccccccccCCCCCCCCC
Q 048006 743 YNNLSGKIPT-VTQLQSFNDTVYAGNPELCGLP 774 (833)
Q Consensus 743 ~N~l~g~ip~-~~~~~~l~~~~~~gn~~lc~~~ 774 (833)
+|++++..+. ...+..+..+.+.|||+.|+|+
T Consensus 144 ~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 176 (229)
T 3e6j_A 144 QNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECR 176 (229)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBG
T ss_pred CCcCCccCHHHHhCCCCCCEEEeeCCCccCCcc
Confidence 9999976654 2556778888899999999885
No 113
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.73 E-value=2.5e-17 Score=187.45 Aligned_cols=187 Identities=26% Similarity=0.358 Sum_probs=96.5
Q ss_pred EEEcCCCcCcCCCCCcccCCCCCcEEEccCCcccccCCCCccCcCCccEEEcccCcCccccCccccCCCCCcEeccCCCc
Q 048006 489 YVDLSSNLLSGKLPDCWWTFDSLVILNLENNSFSGRIPDSMGFLQNIQTLSLHNNRLTGELSSSFRNCSQLRLLDLGKNA 568 (833)
Q Consensus 489 ~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 568 (833)
.+.+..+.+.+..+ +..+++|+.|++++|.+... + .+..+++|+.|+|++|++++..+ +..+++|+.|+|++|.
T Consensus 25 ~l~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~ 98 (605)
T 1m9s_A 25 KDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENK 98 (605)
T ss_dssp HHHTTCSCTTSEEC--HHHHTTCCCCBCTTCCCCCC-T-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSC
T ss_pred HHhccCCCcccccc--hhcCCCCCEEECcCCCCCCC-h-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCC
Confidence 33444444443322 34455555566666555532 2 35555566666666666554433 5555666666666665
Q ss_pred cCCCCCcchhhcCCccceEEecCCcccccccccccCCCCCCEEeccCCcCcccCCccccccccccccCCCCcccccceEE
Q 048006 569 LYGEIPTWMGESLSNLIVLSLKSNKFHGKIPFQLCQLAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKDKLML 648 (833)
Q Consensus 569 l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~ 648 (833)
+. .+| .+. .+++|+.|+|++|.+.+. ..+..+++|+.|+|++|++++. ..+..+++|
T Consensus 99 l~-~l~-~l~-~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L---------------- 155 (605)
T 1m9s_A 99 IK-DLS-SLK-DLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKL---------------- 155 (605)
T ss_dssp CC-CCT-TST-TCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTC----------------
T ss_pred CC-CCh-hhc-cCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCC----------------
Confidence 55 333 222 355566666666655532 2355555666666666655532 223333322
Q ss_pred eeccCcchhccccCcccEEEccCCcCCCCCchhhhcccCCcEEECCCccccccCCcccCCCCCCCEEeCCCCcCcc
Q 048006 649 TWKGSEREYRSTLGLVKSLELSNNNLNGAVPEEIMDLVGLVALNLSKNHLTGQISPKIGQLKSLDFLDLSRNQLVG 724 (833)
Q Consensus 649 ~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 724 (833)
+.|+|++|++++..| +..+++|+.|+|++|+|++. +.+..+++|+.|+|++|++.+
T Consensus 156 ----------------~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~ 211 (605)
T 1m9s_A 156 ----------------DTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLN 211 (605)
T ss_dssp ----------------SEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEEC
T ss_pred ----------------CEEECcCCcCCCchh--hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcC
Confidence 555555555554433 55555555555555555542 245555555555555555554
No 114
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.73 E-value=5.1e-20 Score=208.34 Aligned_cols=192 Identities=21% Similarity=0.209 Sum_probs=139.3
Q ss_pred cCCCCCcEEEccCCcccccCCCCccCcCCccEEEcccCc-------------CccccCccccCCCCCcEec-cCCCccCC
Q 048006 506 WTFDSLVILNLENNSFSGRIPDSMGFLQNIQTLSLHNNR-------------LTGELSSSFRNCSQLRLLD-LGKNALYG 571 (833)
Q Consensus 506 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~-------------l~~~~~~~~~~l~~L~~L~-L~~n~l~~ 571 (833)
..++.|+.|+|++|+++ .+|..++.+++|+.|++++|. ..+..|..+..+++|+.|+ ++.|.+
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~-- 422 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYL-- 422 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHH--
T ss_pred ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhccc--
Confidence 34566777777777776 556667777777777775554 3445556666666666666 454432
Q ss_pred CCCcchhhcCCccceEEecCCcccccccccccCCCCCCEEeccCCcCcccCCccccccccccccCCCCcccccceEEeec
Q 048006 572 EIPTWMGESLSNLIVLSLKSNKFHGKIPFQLCQLAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKDKLMLTWK 651 (833)
Q Consensus 572 ~~p~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~ 651 (833)
..|+.+.+++|.+....+ ..|+.|+|++|.+++ +|. ++.+++|
T Consensus 423 ----------~~L~~l~l~~n~i~~l~~------~~L~~L~Ls~n~l~~-lp~-~~~l~~L------------------- 465 (567)
T 1dce_A 423 ----------DDLRSKFLLENSVLKMEY------ADVRVLHLAHKDLTV-LCH-LEQLLLV------------------- 465 (567)
T ss_dssp ----------HHHHHHHHHHHHHHHHHH------TTCSEEECTTSCCSS-CCC-GGGGTTC-------------------
T ss_pred ----------chhhhhhhhcccccccCc------cCceEEEecCCCCCC-CcC-ccccccC-------------------
Confidence 234444555666653222 248888888888875 554 6666555
Q ss_pred cCcchhccccCcccEEEccCCcCCCCCchhhhcccCCcEEECCCccccccCCcccCCCCCCCEEeCCCCcCcccC-Cccc
Q 048006 652 GSEREYRSTLGLVKSLELSNNNLNGAVPEEIMDLVGLVALNLSKNHLTGQISPKIGQLKSLDFLDLSRNQLVGGI-PSSL 730 (833)
Q Consensus 652 ~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~-p~~l 730 (833)
+.|+|++|+++ .+|..++.+++|+.|+|++|+|++ +| .++.+++|+.|+|++|+|++.+ |..+
T Consensus 466 -------------~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l 529 (567)
T 1dce_A 466 -------------THLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPL 529 (567)
T ss_dssp -------------CEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGG
T ss_pred -------------cEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHH
Confidence 88888888888 788888888899999999998886 56 7888889999999999988776 8888
Q ss_pred cCCCCCCEEECcCCcCccCCCCc
Q 048006 731 SQLSGLSVMDLSYNNLSGKIPTV 753 (833)
Q Consensus 731 ~~l~~L~~L~ls~N~l~g~ip~~ 753 (833)
..+++|+.|++++|++++.+|..
T Consensus 530 ~~l~~L~~L~L~~N~l~~~~~~~ 552 (567)
T 1dce_A 530 VSCPRLVLLNLQGNSLCQEEGIQ 552 (567)
T ss_dssp GGCTTCCEEECTTSGGGGSSSCT
T ss_pred hcCCCCCEEEecCCcCCCCccHH
Confidence 88889999999999988877754
No 115
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.72 E-value=6.4e-18 Score=172.50 Aligned_cols=171 Identities=23% Similarity=0.286 Sum_probs=118.5
Q ss_pred CcCCccEEEcccCcCccccCccccCCCCCcEeccCCCccCCCCCcchhhcCCccceEEecCCcccccccccccCCCCCCE
Q 048006 531 FLQNIQTLSLHNNRLTGELSSSFRNCSQLRLLDLGKNALYGEIPTWMGESLSNLIVLSLKSNKFHGKIPFQLCQLAFLQV 610 (833)
Q Consensus 531 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~ 610 (833)
.+.++..+++++|.+++.. .+..+++|++|++++|.+. .+| .+. .+++|++|++++|++++..+ +..+++|+.
T Consensus 17 ~l~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~-~l~-~l~-~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~ 89 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQ-SLA-GMQ-FFTNLKELHLSHNQISDLSP--LKDLTKLEE 89 (263)
T ss_dssp HHHHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCC-CCT-TGG-GCTTCCEEECCSSCCCCCGG--GTTCSSCCE
T ss_pred HHHHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCcc-cch-HHh-hCCCCCEEECCCCccCCChh--hccCCCCCE
Confidence 3455666666666666443 4566677777777777766 555 333 46777777777777775433 677777777
Q ss_pred EeccCCcCcccCCccccccccccccCCCCcccccceEEeeccCcchhccccCcccEEEccCCcCCCCCchhhhcccCCcE
Q 048006 611 LDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKDKLMLTWKGSEREYRSTLGLVKSLELSNNNLNGAVPEEIMDLVGLVA 690 (833)
Q Consensus 611 L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~ 690 (833)
|++++|++++. |... . ++|+.|++++|++++ ++ .+..+++|++
T Consensus 90 L~L~~N~l~~l-~~~~-~---------------------------------~~L~~L~L~~N~l~~-~~-~l~~l~~L~~ 132 (263)
T 1xeu_A 90 LSVNRNRLKNL-NGIP-S---------------------------------ACLSRLFLDNNELRD-TD-SLIHLKNLEI 132 (263)
T ss_dssp EECCSSCCSCC-TTCC-C---------------------------------SSCCEEECCSSCCSB-SG-GGTTCTTCCE
T ss_pred EECCCCccCCc-Cccc-c---------------------------------CcccEEEccCCccCC-Ch-hhcCcccccE
Confidence 77777777642 2111 1 234778888888875 33 4778888888
Q ss_pred EECCCccccccCCcccCCCCCCCEEeCCCCcCcccCCccccCCCCCCEEECcCCcCccC
Q 048006 691 LNLSKNHLTGQISPKIGQLKSLDFLDLSRNQLVGGIPSSLSQLSGLSVMDLSYNNLSGK 749 (833)
Q Consensus 691 L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ 749 (833)
|+|++|++++. + .+..+++|+.|++++|++++. ..+..+++|+.|++++|++++.
T Consensus 133 L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 133 LSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp EECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred EECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence 88888888754 3 677888888888888888866 5678888888888888888765
No 116
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.72 E-value=8.3e-19 Score=204.96 Aligned_cols=262 Identities=19% Similarity=0.130 Sum_probs=126.7
Q ss_pred CCHHHHHHHHHhhhcCcCC-CCCCCCCCCCCCCCCCCcccceEecCCCCcEEEEECCCCCCCCCCcceecCccccCCCCC
Q 048006 11 CIDEEREALLTFKASLVDE-SGVLSSWGPEDEKRDCCKWTGLRCSNKTNHVILLDLQPIDFDSFPLRGTISPALLKLHDL 89 (833)
Q Consensus 11 ~~~~~~~~ll~~k~~~~~~-~~~~~~w~~~~~~~~~c~w~gv~c~~~~~~v~~l~L~~~~~~~~~l~~~~~~~l~~l~~L 89 (833)
..+.++.+|+++..+...+ ...-..|.. .....+.|.++++. +++++.++|.+ +.+.. .+..+.....|
T Consensus 129 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~s--~~~~~~l~L~~-----n~~~~-~~~~~l~~l~L 198 (727)
T 4b8c_D 129 LVDCTKQALMEMADTLTDSKTAKKQQPTG--DSTPSGTATNSAVS--TPLTPKIELFA-----NGKDE-ANQALLQHKKL 198 (727)
T ss_dssp ---CCCHHHHHHHHHHHHHHTTC---------------------------------------------------------
T ss_pred ccccchhhhhhhhhhcccccCcccCCCcC--CCCccccCCCceec--CCccceEEeeC-----CCCCc-chhhHhhcCcc
Confidence 3456788999998776422 223445642 34566789999886 47899999987 44443 23222222222
Q ss_pred CE-----EeCCCCCCCCCCccccccCCCCCCEEEccCCCCCCCCCcccCCccccceecccCccCCCCCCcccccCCCCCc
Q 048006 90 RH-----LNLSFNDFSGSPIPEFIGSLSKLRYLDLFGTVFAGPIPPQLGNLSRLQHLDLGSNYLFSTGNLDWLSHLSYLR 164 (833)
Q Consensus 90 ~~-----L~Ls~n~~~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~ 164 (833)
+. ++++.|.+. ..|+.+..+++|++|+|++|.+. .+|..+.++++|++|+|++|.+. ..+..++++++|+
T Consensus 199 s~~~i~~~~~~~n~~~--~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~--~lp~~~~~l~~L~ 273 (727)
T 4b8c_D 199 SQYSIDEDDDIENRMV--MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT--ELPAEIKNLSNLR 273 (727)
T ss_dssp -------------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS--CCCGGGGGGTTCC
T ss_pred CcccccCcccccccee--cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc--ccChhhhCCCCCC
Confidence 22 333334443 25778899999999999999998 78888889999999999999987 4456788999999
Q ss_pred EEecCCCCCCCCchhHHhhcCCCCCCEEEccCCCCCCCCCccccccccCCCCCEEEccCCcCCCCCCCcccccccCCcEE
Q 048006 165 YLNLDESNLANSSDWFQVIGKLHSLKTLSLHSCYLPPVIPLSLNHLNSSTSLETLVLSDNNLTSSIYPWLPNISSIFISI 244 (833)
Q Consensus 165 ~L~Ls~n~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~~L~~L 244 (833)
+|+|++|.++. +|..++.+++|++|+|++|.+. .+|. .+.. +++|+.|+|++|.+++.+|..+.........+
T Consensus 274 ~L~Ls~N~l~~---lp~~~~~l~~L~~L~L~~N~l~-~lp~--~~~~-l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l 346 (727)
T 4b8c_D 274 VLDLSHNRLTS---LPAELGSCFQLKYFYFFDNMVT-TLPW--EFGN-LCNLQFLGVEGNPLEKQFLKILTEKSVTGLIF 346 (727)
T ss_dssp EEECTTSCCSS---CCSSGGGGTTCSEEECCSSCCC-CCCS--STTS-CTTCCCEECTTSCCCSHHHHHHHHHHHHHHHH
T ss_pred EEeCcCCcCCc---cChhhcCCCCCCEEECCCCCCC-ccCh--hhhc-CCCccEEeCCCCccCCCChHHHhhcchhhhHH
Confidence 99999999885 5667888999999999999886 4565 4333 48899999999999888877776544323457
Q ss_pred EccCccccccccccccCCCCCcEEECcCC--------cccccccccccCCCCCcEEEccCCCCC
Q 048006 245 DLGFNQLQGSIPESFQHMVYLEHLRLSFN--------ELEGGIPKFFGNMCSLITLNLSNNKLS 300 (833)
Q Consensus 245 ~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n--------~l~~~~p~~l~~l~~L~~L~Ls~n~l~ 300 (833)
+|++|.+++.+|.. |+.|+++.| .+.+..+..+..+..++...+++|.+.
T Consensus 347 ~l~~N~l~~~~p~~------l~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil~ 404 (727)
T 4b8c_D 347 YLRDNRPEIPLPHE------RRFIEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTLC 404 (727)
T ss_dssp HHHHCCCCCCCCCC-----------------------------------------------CCC
T ss_pred hhccCcccCcCccc------cceeEeecccccccccCCccccccchhhcccccceeeeeccccc
Confidence 78888888877764 455666666 333333334445555566666666554
No 117
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.72 E-value=1.9e-17 Score=161.27 Aligned_cols=152 Identities=14% Similarity=0.205 Sum_probs=84.4
Q ss_pred CCCCcEeccCCCccCCCCCcchhhcCCccceEEecCCcccccccccccCCCCCCEEeccCCcCcccCCcccccccccccc
Q 048006 556 CSQLRLLDLGKNALYGEIPTWMGESLSNLIVLSLKSNKFHGKIPFQLCQLAFLQVLDLSLNNISGKIPKCFNNFTAMTQE 635 (833)
Q Consensus 556 l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l 635 (833)
+++|++|++++|.+. .+| .+. .+++|++|++++|.+. .+..+..+++|++|++++|++++..|..+..+++|
T Consensus 43 l~~L~~L~l~~n~i~-~l~-~l~-~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L--- 114 (197)
T 4ezg_A 43 MNSLTYITLANINVT-DLT-GIE-YAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSL--- 114 (197)
T ss_dssp HHTCCEEEEESSCCS-CCT-TGG-GCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTC---
T ss_pred cCCccEEeccCCCcc-ChH-HHh-cCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCC---
Confidence 334444444444444 333 222 3445555555555333 12244555555566666655555445444444443
Q ss_pred CCCCcccccceEEeeccCcchhccccCcccEEEccCCcCCCCCchhhhcccCCcEEECCCcc-ccccCCcccCCCCCCCE
Q 048006 636 RSSDPTIKDKLMLTWKGSEREYRSTLGLVKSLELSNNNLNGAVPEEIMDLVGLVALNLSKNH-LTGQISPKIGQLKSLDF 714 (833)
Q Consensus 636 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~-l~~~~p~~l~~l~~L~~ 714 (833)
+.|++++|++++..|..+..+++|++|++++|+ ++ .+| .+..+++|+.
T Consensus 115 -----------------------------~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~ 163 (197)
T 4ezg_A 115 -----------------------------TLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKS 163 (197)
T ss_dssp -----------------------------CEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCE
T ss_pred -----------------------------CEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCE
Confidence 566666666665566666677777777777776 44 344 5667777777
Q ss_pred EeCCCCcCcccCCccccCCCCCCEEECcCCcCcc
Q 048006 715 LDLSRNQLVGGIPSSLSQLSGLSVMDLSYNNLSG 748 (833)
Q Consensus 715 L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g 748 (833)
|++++|++++ ++ .+..+++|++|++++|++.+
T Consensus 164 L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 164 LNIQFDGVHD-YR-GIEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp EECTTBCCCC-CT-TGGGCSSCCEEEECBC----
T ss_pred EECCCCCCcC-hH-HhccCCCCCEEEeeCcccCC
Confidence 7777777764 33 56677777777777777643
No 118
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.72 E-value=3.1e-20 Score=210.18 Aligned_cols=202 Identities=21% Similarity=0.233 Sum_probs=159.6
Q ss_pred CCcccEEEcCCCcCcCCCCCcccCCCCCcEEEccCCc-------------ccccCCCCccCcCCccEEE-cccCcCcccc
Q 048006 484 GSKLTYVDLSSNLLSGKLPDCWWTFDSLVILNLENNS-------------FSGRIPDSMGFLQNIQTLS-LHNNRLTGEL 549 (833)
Q Consensus 484 ~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~-------------l~~~~~~~~~~l~~L~~L~-L~~n~l~~~~ 549 (833)
++.|+.|++++|+++ .+|..++.+++|+.|++++|. +.+..|..++.+++|+.|+ ++.|.+.
T Consensus 348 ~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~--- 423 (567)
T 1dce_A 348 DEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD--- 423 (567)
T ss_dssp TTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH---
T ss_pred CccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc---
Confidence 467778888888887 667788888888888887664 4566777788889999988 6766543
Q ss_pred CccccCCCCCcEeccCCCccCCCCCcchhhcCCccceEEecCCcccccccccccCCCCCCEEeccCCcCcccCCcccccc
Q 048006 550 SSSFRNCSQLRLLDLGKNALYGEIPTWMGESLSNLIVLSLKSNKFHGKIPFQLCQLAFLQVLDLSLNNISGKIPKCFNNF 629 (833)
Q Consensus 550 ~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l 629 (833)
.|+.+.+++|.+. .+|. ..|+.|+|++|.+++ +|. +..+++|+.|+|++|.++ .+|..|+.+
T Consensus 424 --------~L~~l~l~~n~i~-~l~~------~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l 485 (567)
T 1dce_A 424 --------DLRSKFLLENSVL-KMEY------ADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAAL 485 (567)
T ss_dssp --------HHHHHHHHHHHHH-HHHH------TTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGC
T ss_pred --------hhhhhhhhccccc-ccCc------cCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcC
Confidence 4566777788776 3332 258889999998885 565 888899999999999988 778888777
Q ss_pred ccccccCCCCcccccceEEeeccCcchhccccCcccEEEccCCcCCCCCchhhhcccCCcEEECCCccccccC-CcccCC
Q 048006 630 TAMTQERSSDPTIKDKLMLTWKGSEREYRSTLGLVKSLELSNNNLNGAVPEEIMDLVGLVALNLSKNHLTGQI-SPKIGQ 708 (833)
Q Consensus 630 ~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~-p~~l~~ 708 (833)
++| +.|+|++|++++ +| .++.+++|++|+|++|+|++.+ |..++.
T Consensus 486 ~~L--------------------------------~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~ 531 (567)
T 1dce_A 486 RCL--------------------------------EVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVS 531 (567)
T ss_dssp TTC--------------------------------CEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGG
T ss_pred CCC--------------------------------CEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhc
Confidence 666 889999999985 67 7899999999999999999877 899999
Q ss_pred CCCCCEEeCCCCcCcccCCcc---ccCCCCCCEEEC
Q 048006 709 LKSLDFLDLSRNQLVGGIPSS---LSQLSGLSVMDL 741 (833)
Q Consensus 709 l~~L~~L~Ls~N~l~~~~p~~---l~~l~~L~~L~l 741 (833)
+++|+.|+|++|++++.+|.. +..+++|+.||+
T Consensus 532 l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 532 CPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp CTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 999999999999998766532 334788888874
No 119
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.70 E-value=4.4e-17 Score=158.66 Aligned_cols=154 Identities=19% Similarity=0.245 Sum_probs=97.7
Q ss_pred cCcCCccEEEcccCcCccccCccccCCCCCcEeccCCCccCCCCCcchhhcCCccceEEecCCcccccccccccCCCCCC
Q 048006 530 GFLQNIQTLSLHNNRLTGELSSSFRNCSQLRLLDLGKNALYGEIPTWMGESLSNLIVLSLKSNKFHGKIPFQLCQLAFLQ 609 (833)
Q Consensus 530 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~ 609 (833)
..+++|++|++++|.++ .+| .+..+++|++|++++|.+. .++ .+. .+++|++|++++|++++..+..+..+++|+
T Consensus 41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~-~~~-~l~-~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~ 115 (197)
T 4ezg_A 41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT-NYN-PIS-GLSNLERLRIMGKDVTSDKIPNLSGLTSLT 115 (197)
T ss_dssp HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS-CCG-GGT-TCTTCCEEEEECTTCBGGGSCCCTTCTTCC
T ss_pred hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC-cch-hhh-cCCCCCEEEeECCccCcccChhhcCCCCCC
Confidence 34455555555555555 333 4555666666666666543 232 333 466777777777777666666677777777
Q ss_pred EEeccCCcCcccCCccccccccccccCCCCcccccceEEeeccCcchhccccCcccEEEccCCc-CCCCCchhhhcccCC
Q 048006 610 VLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKDKLMLTWKGSEREYRSTLGLVKSLELSNNN-LNGAVPEEIMDLVGL 688 (833)
Q Consensus 610 ~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~-l~~~~p~~l~~l~~L 688 (833)
+|++++|++++..|..+..+++| +.|++++|+ ++ .+| .+..+++|
T Consensus 116 ~L~Ls~n~i~~~~~~~l~~l~~L--------------------------------~~L~L~~n~~i~-~~~-~l~~l~~L 161 (197)
T 4ezg_A 116 LLDISHSAHDDSILTKINTLPKV--------------------------------NSIDLSYNGAIT-DIM-PLKTLPEL 161 (197)
T ss_dssp EEECCSSBCBGGGHHHHTTCSSC--------------------------------CEEECCSCTBCC-CCG-GGGGCSSC
T ss_pred EEEecCCccCcHhHHHHhhCCCC--------------------------------CEEEccCCCCcc-ccH-hhcCCCCC
Confidence 77777777776556555555544 777777776 44 455 57778888
Q ss_pred cEEECCCccccccCCcccCCCCCCCEEeCCCCcCcc
Q 048006 689 VALNLSKNHLTGQISPKIGQLKSLDFLDLSRNQLVG 724 (833)
Q Consensus 689 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 724 (833)
++|++++|++++ ++ .+..+++|+.|++++|++.+
T Consensus 162 ~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 162 KSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp CEEECTTBCCCC-CT-TGGGCSSCCEEEECBC----
T ss_pred CEEECCCCCCcC-hH-HhccCCCCCEEEeeCcccCC
Confidence 888888888875 33 67778888888888888753
No 120
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.69 E-value=3.1e-17 Score=158.81 Aligned_cols=176 Identities=20% Similarity=0.217 Sum_probs=124.6
Q ss_pred cEeccCCCccCCCCCcchhhcCCccceEEecCCcccccccc-cccCCCCCCEEeccCCcCcccCCccccccccccccCCC
Q 048006 560 RLLDLGKNALYGEIPTWMGESLSNLIVLSLKSNKFHGKIPF-QLCQLAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSS 638 (833)
Q Consensus 560 ~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~~~-~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~ 638 (833)
+++++++|.+. .+|..+. .++++|++++|.+++..+. .+..+++|++|+|++|++++..|..|..+++|
T Consensus 11 ~~l~~s~~~l~-~ip~~~~---~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L------ 80 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIP---LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHI------ 80 (192)
T ss_dssp TEEECTTSCCS-SCCSCCC---TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTC------
T ss_pred CEEEcCCCCcC-cCccCCC---CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccC------
Confidence 56777777775 7776554 3778888888888765554 47788888888888888888778777776666
Q ss_pred CcccccceEEeeccCcchhccccCcccEEEccCCcCCCCCchhhhcccCCcEEECCCccccccCCcccCCCCCCCEEeCC
Q 048006 639 DPTIKDKLMLTWKGSEREYRSTLGLVKSLELSNNNLNGAVPEEIMDLVGLVALNLSKNHLTGQISPKIGQLKSLDFLDLS 718 (833)
Q Consensus 639 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls 718 (833)
+.|+|++|++++..+..|..+++|++|+|++|++++..|..|..+++|++|+|+
T Consensus 81 --------------------------~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 134 (192)
T 1w8a_A 81 --------------------------QELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLA 134 (192)
T ss_dssp --------------------------CEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECT
T ss_pred --------------------------CEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeC
Confidence 888888888888888888889999999999999999999999999999999999
Q ss_pred CCcCcccCCccccCCCCCCEEECcCCcCccCCCCccccCccccccccCCCCCCCCC
Q 048006 719 RNQLVGGIPSSLSQLSGLSVMDLSYNNLSGKIPTVTQLQSFNDTVYAGNPELCGLP 774 (833)
Q Consensus 719 ~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~l~~~~~~gn~~lc~~~ 774 (833)
+|++.+..+-..- ...++...+..+...+.-|.. +....-.++..+...|..+
T Consensus 135 ~N~l~c~c~l~~~-~~~l~~~~~~~~~~~C~~P~~--l~~~~l~~l~~~~~~C~~~ 187 (192)
T 1w8a_A 135 SNPFNCNCHLAWF-AEWLRKKSLNGGAARCGAPSK--VRDVQIKDLPHSEFKCSSE 187 (192)
T ss_dssp TCCBCCSGGGHHH-HHHHHHHCCSGGGCBBCSSTT--TTTSBGGGSCTTTCCCCCC
T ss_pred CCCccCcCcchHH-HHHHHHcCCCCCCCCCCCChH--HcCCChhhCcHhhcCcCCC
Confidence 9999876542110 011222234445555555543 2222223344455556443
No 121
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.68 E-value=1.3e-17 Score=170.11 Aligned_cols=123 Identities=18% Similarity=0.299 Sum_probs=65.7
Q ss_pred CcccEEEcCCCcCcCCCCCcccCCCCCcEEEccCCcccccCCCCccCcCCccEEEcccCcCccccCccccCCCCCcEecc
Q 048006 485 SKLTYVDLSSNLLSGKLPDCWWTFDSLVILNLENNSFSGRIPDSMGFLQNIQTLSLHNNRLTGELSSSFRNCSQLRLLDL 564 (833)
Q Consensus 485 ~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 564 (833)
.++..+++++|.+++.. .+..+++|++|++++|.++. ++ .+..+++|++|++++|++++..+ +..+++|++|++
T Consensus 19 ~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L 92 (263)
T 1xeu_A 19 ANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSV 92 (263)
T ss_dssp HHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEEC
T ss_pred HHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEEC
Confidence 44555666666666432 35566666666666666653 33 45566666666666666664433 556666666666
Q ss_pred CCCccCCCCCcchhhcCCccceEEecCCcccccccccccCCCCCCEEeccCCcCc
Q 048006 565 GKNALYGEIPTWMGESLSNLIVLSLKSNKFHGKIPFQLCQLAFLQVLDLSLNNIS 619 (833)
Q Consensus 565 ~~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~ 619 (833)
++|+++ .+|.... ++|++|++++|.+++. + .+..+++|+.|++++|+++
T Consensus 93 ~~N~l~-~l~~~~~---~~L~~L~L~~N~l~~~-~-~l~~l~~L~~L~Ls~N~i~ 141 (263)
T 1xeu_A 93 NRNRLK-NLNGIPS---ACLSRLFLDNNELRDT-D-SLIHLKNLEILSIRNNKLK 141 (263)
T ss_dssp CSSCCS-CCTTCCC---SSCCEEECCSSCCSBS-G-GGTTCTTCCEEECTTSCCC
T ss_pred CCCccC-CcCcccc---CcccEEEccCCccCCC-h-hhcCcccccEEECCCCcCC
Confidence 666665 3433211 4455555555554432 1 2444444444444444443
No 122
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.68 E-value=1.3e-17 Score=194.78 Aligned_cols=189 Identities=23% Similarity=0.236 Sum_probs=107.9
Q ss_pred ccCCcccccCCCCccCcCCccEEEcccCcCccccCccccCCCCCcEeccCCCccCCCCCcchhhcCCccceEEecCCccc
Q 048006 516 LENNSFSGRIPDSMGFLQNIQTLSLHNNRLTGELSSSFRNCSQLRLLDLGKNALYGEIPTWMGESLSNLIVLSLKSNKFH 595 (833)
Q Consensus 516 Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~ 595 (833)
++.|.+. ..+..+..++.|+.|+|++|.+. .+|..+..+++|++|+|++|.++ .+|..+. .+++|++|+|++|.++
T Consensus 208 ~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~-~l~~L~~L~Ls~N~l~ 283 (727)
T 4b8c_D 208 DIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIK-NLSNLRVLDLSHNRLT 283 (727)
T ss_dssp ---------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGG-GGTTCCEEECTTSCCS
T ss_pred cccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhh-CCCCCCEEeCcCCcCC
Confidence 3344444 45667777888888888888887 56666667888888888888887 7887765 6888888888888888
Q ss_pred ccccccccCCCCCCEEeccCCcCcccCCccccccccccccCCCCcccccceEEeeccCcchhccccCcccEEEccCCcCC
Q 048006 596 GKIPFQLCQLAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKDKLMLTWKGSEREYRSTLGLVKSLELSNNNLN 675 (833)
Q Consensus 596 ~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~ 675 (833)
.+|..+..+++|++|+|++|.|+ .+|..|+++++| +.|+|++|.|+
T Consensus 284 -~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L--------------------------------~~L~L~~N~l~ 329 (727)
T 4b8c_D 284 -SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNL--------------------------------QFLGVEGNPLE 329 (727)
T ss_dssp -SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTC--------------------------------CCEECTTSCCC
T ss_pred -ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCc--------------------------------cEEeCCCCccC
Confidence 66878888888888888888886 667667766666 77888888888
Q ss_pred CCCchhhhcccC-CcEEECCCccccccCCcccCCCCCCCEEeCCCC--------cCcccCCccccCCCCCCEEECcCCcC
Q 048006 676 GAVPEEIMDLVG-LVALNLSKNHLTGQISPKIGQLKSLDFLDLSRN--------QLVGGIPSSLSQLSGLSVMDLSYNNL 746 (833)
Q Consensus 676 ~~~p~~l~~l~~-L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N--------~l~~~~p~~l~~l~~L~~L~ls~N~l 746 (833)
+.+|..+..+.. +..|+|++|.+++.+|.. |+.|++++| .+.+..+..+..+..+....+++|-+
T Consensus 330 ~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~------l~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil 403 (727)
T 4b8c_D 330 KQFLKILTEKSVTGLIFYLRDNRPEIPLPHE------RRFIEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTL 403 (727)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC-----------------------------------------------CC
T ss_pred CCChHHHhhcchhhhHHhhccCcccCcCccc------cceeEeecccccccccCCccccccchhhcccccceeeeecccc
Confidence 877777765422 234778888888777753 455666666 44444555556667777788888887
Q ss_pred cc
Q 048006 747 SG 748 (833)
Q Consensus 747 ~g 748 (833)
.+
T Consensus 404 ~~ 405 (727)
T 4b8c_D 404 CQ 405 (727)
T ss_dssp CG
T ss_pred cc
Confidence 64
No 123
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.66 E-value=2.7e-16 Score=152.06 Aligned_cols=163 Identities=21% Similarity=0.226 Sum_probs=114.7
Q ss_pred ceEEecCCcccccccccccCCCCCCEEeccCCcCcccCCccccccccccccCCCCcccccceEEeeccCcchhccccCcc
Q 048006 585 IVLSLKSNKFHGKIPFQLCQLAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKDKLMLTWKGSEREYRSTLGLV 664 (833)
Q Consensus 585 ~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 664 (833)
+++++++|.++ .+|..+. ++|+.|++++|+++ .+|..|.+++.|
T Consensus 13 ~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L-------------------------------- 56 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHL-------------------------------- 56 (193)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTC--------------------------------
T ss_pred CEEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCC--------------------------------
Confidence 45566666655 3444332 46777777777776 555566555555
Q ss_pred cEEEccCCcCCCCCchhhhcccCCcEEECCCccccccCCcccCCCCCCCEEeCCCCcCcccCCccccCCCCCCEEECcCC
Q 048006 665 KSLELSNNNLNGAVPEEIMDLVGLVALNLSKNHLTGQISPKIGQLKSLDFLDLSRNQLVGGIPSSLSQLSGLSVMDLSYN 744 (833)
Q Consensus 665 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N 744 (833)
+.|+|++|++++..+..|.++++|++|+|++|+|++..|..|..+++|+.|+|++|++++..+..|..+++|+.|++++|
T Consensus 57 ~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 136 (193)
T 2wfh_A 57 TLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGAN 136 (193)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSS
T ss_pred CEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCC
Confidence 77888888888777777888899999999999999888888999999999999999999777778889999999999999
Q ss_pred cCccCCCCccccCccccccccCCCCCCCCCCCCCCCCCCCCCCCCCc
Q 048006 745 NLSGKIPTVTQLQSFNDTVYAGNPELCGLPLPNKCRDEESAAGPGIT 791 (833)
Q Consensus 745 ~l~g~ip~~~~~~~l~~~~~~gn~~lc~~~~~~~c~~~~~~~~~~~~ 791 (833)
++.+.+.......++...... +-...|..|+..++....
T Consensus 137 ~~~C~c~l~~l~~~~~~~~~~--------~~~~~C~~P~~l~g~~l~ 175 (193)
T 2wfh_A 137 PLYCDCNMQWLSDWVKSEYKE--------PGIARCAGPGEMADKLLL 175 (193)
T ss_dssp CEECSGGGHHHHHHHHHSSCC--------CSCCBEEESGGGTTCBTT
T ss_pred CeecCCcCHHHHHHHHhccCC--------CCCcCcCCchHHCCCCcc
Confidence 998876543222222211111 112367777777665554
No 124
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.65 E-value=4.1e-16 Score=150.75 Aligned_cols=112 Identities=24% Similarity=0.325 Sum_probs=102.1
Q ss_pred cccEEEccCCcCCCCCchhhhcccCCcEEECCCccccccCCcccCCCCCCCEEeCCCCcCcccCCccccCCCCCCEEECc
Q 048006 663 LVKSLELSNNNLNGAVPEEIMDLVGLVALNLSKNHLTGQISPKIGQLKSLDFLDLSRNQLVGGIPSSLSQLSGLSVMDLS 742 (833)
Q Consensus 663 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls 742 (833)
.++.|++++|+++ .+|..|..+++|++|+|++|+|++..+..|.++++|++|+|++|+|++..|..|..+++|++|+++
T Consensus 32 ~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~ 110 (193)
T 2wfh_A 32 DVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLH 110 (193)
T ss_dssp TCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECC
T ss_pred CCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECC
Confidence 3599999999998 788999999999999999999998888899999999999999999999999999999999999999
Q ss_pred CCcCccCCCC-ccccCccccccccCCCCCCCCCC
Q 048006 743 YNNLSGKIPT-VTQLQSFNDTVYAGNPELCGLPL 775 (833)
Q Consensus 743 ~N~l~g~ip~-~~~~~~l~~~~~~gn~~lc~~~~ 775 (833)
+|++++..+. ...+..+..+.+.+|||.|+|.+
T Consensus 111 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~c~l 144 (193)
T 2wfh_A 111 GNDISVVPEGAFNDLSALSHLAIGANPLYCDCNM 144 (193)
T ss_dssp SSCCCBCCTTTTTTCTTCCEEECCSSCEECSGGG
T ss_pred CCCCCeeChhhhhcCccccEEEeCCCCeecCCcC
Confidence 9999976664 35577788889999999999874
No 125
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.65 E-value=2.7e-16 Score=166.62 Aligned_cols=100 Identities=19% Similarity=0.154 Sum_probs=56.6
Q ss_pred CCCCcEEECcCCccc--ccccccccCCCCCcEEEccCCCCCchhhHHHhh--------cCCccccCCccEEEcccccccc
Q 048006 262 MVYLEHLRLSFNELE--GGIPKFFGNMCSLITLNLSNNKLSGQLSEIIQN--------LSSGCLENSLKSLYLENSLTGV 331 (833)
Q Consensus 262 l~~L~~L~L~~n~l~--~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~--------l~~~~~~~~L~~L~L~~~~~~~ 331 (833)
+++|++|||++|++. ..... .++.++.+.+..|.+ .+..|.+ ++ +|+.+++.+ .+..
T Consensus 48 l~~L~~LdLs~n~i~~~~~~~~---~~~~~~~~~~~~~~I---~~~aF~~~~~~~~~g~~------~L~~l~L~~-~i~~ 114 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGKAG---TYPNGKFYIYMANFV---PAYAFSNVVNGVTKGKQ------TLEKVILSE-KIKN 114 (329)
T ss_dssp CTTCCEEEEEEEEECCEEESSS---SSGGGCCEEECTTEE---CTTTTEEEETTEEEECT------TCCC-CBCT-TCCE
T ss_pred hccCeEEecCcceeEEecCccc---ccccccccccccccc---CHHHhcccccccccccC------CCcEEECCc-cccc
Confidence 566666666666665 11111 122233444444422 2233444 55 667777655 5666
Q ss_pred cChhhhcCCCCCCEEECcCCccccccCCCccCCccccEEEccC
Q 048006 332 ISESFFSNISNLKELHLANNPLVLKLSHDWVPPFQLIIISLSS 374 (833)
Q Consensus 332 i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~ 374 (833)
|+..+|.++++|+++++.+|.+....+..|..+.++..+....
T Consensus 115 I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~ 157 (329)
T 3sb4_A 115 IEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGS 157 (329)
T ss_dssp ECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTC
T ss_pred hhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcc
Confidence 7777777777777777777777666666666666666555544
No 126
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.63 E-value=8.5e-16 Score=162.82 Aligned_cols=220 Identities=13% Similarity=0.083 Sum_probs=146.3
Q ss_pred CCcccEEEcCCCcCcCCCCCcccCCCCCcEEEccCCcccccCCCCccCcCCccEEEcccCc----CccccCccccCCCCC
Q 048006 484 GSKLTYVDLSSNLLSGKLPDCWWTFDSLVILNLENNSFSGRIPDSMGFLQNIQTLSLHNNR----LTGELSSSFRNCSQL 559 (833)
Q Consensus 484 ~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~----l~~~~~~~~~~l~~L 559 (833)
+++|+.+++.+ .++.+.+.+|.+|++|+.+++++|.+....+.+|.++.++..+.+..+. ........|.++..|
T Consensus 100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L 178 (329)
T 3sb4_A 100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPL 178 (329)
T ss_dssp CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCC
T ss_pred cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccccccccc
Confidence 56777777777 6665666667777777777777777766666677776666666655432 222334455666666
Q ss_pred c-EeccCCCccCCCCCcchhh---cCCccceEEecCCcccccccccccCCCCCCEEeccCCcCcccCCcccccccccccc
Q 048006 560 R-LLDLGKNALYGEIPTWMGE---SLSNLIVLSLKSNKFHGKIPFQLCQLAFLQVLDLSLNNISGKIPKCFNNFTAMTQE 635 (833)
Q Consensus 560 ~-~L~L~~n~l~~~~p~~~~~---~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l 635 (833)
+ .+.+... +.++..++. ...++..+.+.++-...........+++|+.++|++|+++...+.+|.++++|
T Consensus 179 ~~~i~~~~~---~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L--- 252 (329)
T 3sb4_A 179 ETTIQVGAM---GKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYL--- 252 (329)
T ss_dssp EEEEEECTT---CCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTC---
T ss_pred ceeEEecCC---CcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCC---
Confidence 6 4444332 133333221 14455666665542221111111236888888888888876666777777666
Q ss_pred CCCCcccccceEEeeccCcchhccccCcccEEEccCCcCCCCCchhhhcccCCc-EEECCCccccccCCcccCCCCCCCE
Q 048006 636 RSSDPTIKDKLMLTWKGSEREYRSTLGLVKSLELSNNNLNGAVPEEIMDLVGLV-ALNLSKNHLTGQISPKIGQLKSLDF 714 (833)
Q Consensus 636 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~-~L~Ls~N~l~~~~p~~l~~l~~L~~ 714 (833)
+.|++.+| ++...+..|.++++|+ .+++.+ .++...+.+|.++++|+.
T Consensus 253 -----------------------------~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~ 301 (329)
T 3sb4_A 253 -----------------------------LKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRY 301 (329)
T ss_dssp -----------------------------CEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEE
T ss_pred -----------------------------CEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCE
Confidence 78888887 7656667788888888 888888 777677788888888888
Q ss_pred EeCCCCcCcccCCccccCCCCCCEEEC
Q 048006 715 LDLSRNQLVGGIPSSLSQLSGLSVMDL 741 (833)
Q Consensus 715 L~Ls~N~l~~~~p~~l~~l~~L~~L~l 741 (833)
+++++|+++...+..|.++++|+.++.
T Consensus 302 l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 302 VLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp EEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred EEeCCCccCccchhhhcCCcchhhhcc
Confidence 888888888777788888888888764
No 127
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.63 E-value=9.2e-16 Score=145.17 Aligned_cols=134 Identities=25% Similarity=0.214 Sum_probs=95.6
Q ss_pred CCccceEEecCCccc-ccccccccCCCCCCEEeccCCcCcccCCccccccccccccCCCCcccccceEEeeccCcchhcc
Q 048006 581 LSNLIVLSLKSNKFH-GKIPFQLCQLAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKDKLMLTWKGSEREYRS 659 (833)
Q Consensus 581 l~~L~~L~L~~N~l~-~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~ 659 (833)
.++|++|++++|.++ +.+|..+..+++|++|++++|.+++. ..+..+++|
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L--------------------------- 73 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKL--------------------------- 73 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSC---------------------------
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCC---------------------------
Confidence 356666777777666 55666666677777777777776644 344444443
Q ss_pred ccCcccEEEccCCcCCCCCchhhhcccCCcEEECCCccccccC-CcccCCCCCCCEEeCCCCcCcccCC---ccccCCCC
Q 048006 660 TLGLVKSLELSNNNLNGAVPEEIMDLVGLVALNLSKNHLTGQI-SPKIGQLKSLDFLDLSRNQLVGGIP---SSLSQLSG 735 (833)
Q Consensus 660 ~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~-p~~l~~l~~L~~L~Ls~N~l~~~~p---~~l~~l~~ 735 (833)
+.|++++|++++.+|..+..+++|++|+|++|++++.. +..+..+++|+.|++++|++++..+ ..+..+++
T Consensus 74 -----~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~ 148 (168)
T 2ell_A 74 -----KKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQ 148 (168)
T ss_dssp -----CEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSS
T ss_pred -----CEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCcc
Confidence 77777777777667777777888888888888887542 2677888888888888888886555 47778888
Q ss_pred CCEEECcCCcCcc
Q 048006 736 LSVMDLSYNNLSG 748 (833)
Q Consensus 736 L~~L~ls~N~l~g 748 (833)
|++|++++|.+..
T Consensus 149 L~~L~l~~n~~~~ 161 (168)
T 2ell_A 149 LTYLDGYDREDQE 161 (168)
T ss_dssp CCEETTEETTSCB
T ss_pred CcEecCCCCChhh
Confidence 8888888887763
No 128
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.62 E-value=1e-15 Score=141.62 Aligned_cols=129 Identities=22% Similarity=0.223 Sum_probs=103.4
Q ss_pred CCccceEEecCCccc-ccccccccCCCCCCEEeccCCcCcccCCccccccccccccCCCCcccccceEEeeccCcchhcc
Q 048006 581 LSNLIVLSLKSNKFH-GKIPFQLCQLAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKDKLMLTWKGSEREYRS 659 (833)
Q Consensus 581 l~~L~~L~L~~N~l~-~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~ 659 (833)
.++|+.|++++|.++ +.+|..+..+++|+.|++++|.+++. ..+..+++|
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L--------------------------- 66 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKL--------------------------- 66 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTC---------------------------
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCC---------------------------
Confidence 467888888888887 67777778888888888888888754 445444444
Q ss_pred ccCcccEEEccCCcCCCCCchhhhcccCCcEEECCCcccccc-CCcccCCCCCCCEEeCCCCcCcccCC---ccccCCCC
Q 048006 660 TLGLVKSLELSNNNLNGAVPEEIMDLVGLVALNLSKNHLTGQ-ISPKIGQLKSLDFLDLSRNQLVGGIP---SSLSQLSG 735 (833)
Q Consensus 660 ~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~-~p~~l~~l~~L~~L~Ls~N~l~~~~p---~~l~~l~~ 735 (833)
+.|++++|++++.+|..+..+++|++|++++|++++. .+..++.+++|++|++++|++++..+ ..+..+++
T Consensus 67 -----~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~ 141 (149)
T 2je0_A 67 -----KKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQ 141 (149)
T ss_dssp -----CEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTT
T ss_pred -----CEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCC
Confidence 8889999998877888888899999999999998864 34778889999999999999987666 57888899
Q ss_pred CCEEECcC
Q 048006 736 LSVMDLSY 743 (833)
Q Consensus 736 L~~L~ls~ 743 (833)
|+.||+++
T Consensus 142 L~~L~l~d 149 (149)
T 2je0_A 142 LTYLDGYD 149 (149)
T ss_dssp CCEETTBC
T ss_pred cccccCCC
Confidence 99998864
No 129
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.61 E-value=3.9e-15 Score=142.17 Aligned_cols=135 Identities=21% Similarity=0.236 Sum_probs=101.7
Q ss_pred cceEEecCCcccccccccccCCCCCCEEeccCCcCcccCCccccccccccccCCCCcccccceEEeeccCcchhccccCc
Q 048006 584 LIVLSLKSNKFHGKIPFQLCQLAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSSDPTIKDKLMLTWKGSEREYRSTLGL 663 (833)
Q Consensus 584 L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 663 (833)
.+.+++++|.++ .+|..+ .++|+.|++++|++.+..+..|..+++|
T Consensus 9 ~~~l~~~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L------------------------------- 54 (177)
T 2o6r_A 9 GTEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQL------------------------------- 54 (177)
T ss_dssp TTEEECCSSCCS-SCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTC-------------------------------
T ss_pred CCEEEecCCCCc-cCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccc-------------------------------
Confidence 345556666555 233322 2567777777777765555555555544
Q ss_pred ccEEEccCCcCCCCCchhhhcccCCcEEECCCccccccCCcccCCCCCCCEEeCCCCcCcccCCccccCCCCCCEEECcC
Q 048006 664 VKSLELSNNNLNGAVPEEIMDLVGLVALNLSKNHLTGQISPKIGQLKSLDFLDLSRNQLVGGIPSSLSQLSGLSVMDLSY 743 (833)
Q Consensus 664 L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~ 743 (833)
++|++++|++++..+..+..+++|++|++++|++++..+..+..+++|++|++++|++++..+..+..+++|++|++++
T Consensus 55 -~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 133 (177)
T 2o6r_A 55 -TKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHT 133 (177)
T ss_dssp -SEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCS
T ss_pred -cEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecC
Confidence 7777888887766666678889999999999999977777788999999999999999977777788899999999999
Q ss_pred CcCccCCCCc
Q 048006 744 NNLSGKIPTV 753 (833)
Q Consensus 744 N~l~g~ip~~ 753 (833)
|++.|.+|..
T Consensus 134 N~~~~~~~~l 143 (177)
T 2o6r_A 134 NPWDCSCPRI 143 (177)
T ss_dssp SCBCCCHHHH
T ss_pred CCeeccCccH
Confidence 9999988743
No 130
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.60 E-value=2.4e-15 Score=142.27 Aligned_cols=136 Identities=26% Similarity=0.251 Sum_probs=95.7
Q ss_pred CCCcEeccCCCccC-CCCCcchhhcCCccceEEecCCcccccccccccCCCCCCEEeccCCcCcccCCcccccccccccc
Q 048006 557 SQLRLLDLGKNALY-GEIPTWMGESLSNLIVLSLKSNKFHGKIPFQLCQLAFLQVLDLSLNNISGKIPKCFNNFTAMTQE 635 (833)
Q Consensus 557 ~~L~~L~L~~n~l~-~~~p~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l 635 (833)
++|++|++++|.+. +.+|..+. .+++|++|++++|.+++. ..+..+++|++|++++|++.+.+|..+..+++|
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~-~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L--- 97 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTA-EFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNL--- 97 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCG-GGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTC---
T ss_pred ccCCEEECCCCCCChhhHHHHHH-hCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCC---
Confidence 55666666666665 55665543 466777777777776654 566777777778888777776666555555544
Q ss_pred CCCCcccccceEEeeccCcchhccccCcccEEEccCCcCCCCC-chhhhcccCCcEEECCCccccccCC---cccCCCCC
Q 048006 636 RSSDPTIKDKLMLTWKGSEREYRSTLGLVKSLELSNNNLNGAV-PEEIMDLVGLVALNLSKNHLTGQIS---PKIGQLKS 711 (833)
Q Consensus 636 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~-p~~l~~l~~L~~L~Ls~N~l~~~~p---~~l~~l~~ 711 (833)
+.|++++|++++.. +..+..+++|++|++++|.+++..+ ..+..+++
T Consensus 98 -----------------------------~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~ 148 (168)
T 2ell_A 98 -----------------------------THLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQ 148 (168)
T ss_dssp -----------------------------CEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSS
T ss_pred -----------------------------CEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCcc
Confidence 77888888887532 2677888888888888888886554 47888888
Q ss_pred CCEEeCCCCcCcccCCc
Q 048006 712 LDFLDLSRNQLVGGIPS 728 (833)
Q Consensus 712 L~~L~Ls~N~l~~~~p~ 728 (833)
|+.|++++|.+. .+|.
T Consensus 149 L~~L~l~~n~~~-~~~~ 164 (168)
T 2ell_A 149 LTYLDGYDREDQ-EAPD 164 (168)
T ss_dssp CCEETTEETTSC-BCCS
T ss_pred CcEecCCCCChh-hccc
Confidence 888888888887 4444
No 131
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.55 E-value=2.1e-14 Score=137.07 Aligned_cols=133 Identities=26% Similarity=0.221 Sum_probs=106.8
Q ss_pred CcEeccCCCccCCCCCcchhhcCCccceEEecCCcccccccccccCCCCCCEEeccCCcCcccCCccccccccccccCCC
Q 048006 559 LRLLDLGKNALYGEIPTWMGESLSNLIVLSLKSNKFHGKIPFQLCQLAFLQVLDLSLNNISGKIPKCFNNFTAMTQERSS 638 (833)
Q Consensus 559 L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~ 638 (833)
.+.+++++|.+. .+|..+ .++|++|++++|++++..+..+..+++|++|++++|++++..+..|..+++|
T Consensus 9 ~~~l~~~~~~l~-~~p~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L------ 78 (177)
T 2o6r_A 9 GTEIRCNSKGLT-SVPTGI---PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKL------ 78 (177)
T ss_dssp TTEEECCSSCCS-SCCTTC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTC------
T ss_pred CCEEEecCCCCc-cCCCCC---CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCcc------
Confidence 456777777776 666543 3578888888888886666677888889999999998886666666666655
Q ss_pred CcccccceEEeeccCcchhccccCcccEEEccCCcCCCCCchhhhcccCCcEEECCCccccccCCcccCCCCCCCEEeCC
Q 048006 639 DPTIKDKLMLTWKGSEREYRSTLGLVKSLELSNNNLNGAVPEEIMDLVGLVALNLSKNHLTGQISPKIGQLKSLDFLDLS 718 (833)
Q Consensus 639 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls 718 (833)
+.|++++|++++..+..+..+++|++|++++|++++..+..+..+++|+.|+++
T Consensus 79 --------------------------~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 132 (177)
T 2o6r_A 79 --------------------------TILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLH 132 (177)
T ss_dssp --------------------------CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECC
T ss_pred --------------------------CEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEec
Confidence 889999999987777778899999999999999997766677889999999999
Q ss_pred CCcCcccCC
Q 048006 719 RNQLVGGIP 727 (833)
Q Consensus 719 ~N~l~~~~p 727 (833)
+|++.+..|
T Consensus 133 ~N~~~~~~~ 141 (177)
T 2o6r_A 133 TNPWDCSCP 141 (177)
T ss_dssp SSCBCCCHH
T ss_pred CCCeeccCc
Confidence 999987654
No 132
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.54 E-value=8.1e-15 Score=135.50 Aligned_cols=127 Identities=24% Similarity=0.247 Sum_probs=98.1
Q ss_pred CcccEEEcCCCcCc-CCCCCcccCCCCCcEEEccCCcccccCCCCccCcCCccEEEcccCcCccccCccccCCCCCcEec
Q 048006 485 SKLTYVDLSSNLLS-GKLPDCWWTFDSLVILNLENNSFSGRIPDSMGFLQNIQTLSLHNNRLTGELSSSFRNCSQLRLLD 563 (833)
Q Consensus 485 ~~L~~L~ls~n~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 563 (833)
+++++|++++|.++ +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|.+++.+|..+..+++|++|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 67888888888887 67777778888888888888888865 6677888888888888888876777777788888888
Q ss_pred cCCCccCCCCC--cchhhcCCccceEEecCCccccccc---ccccCCCCCCEEeccC
Q 048006 564 LGKNALYGEIP--TWMGESLSNLIVLSLKSNKFHGKIP---FQLCQLAFLQVLDLSL 615 (833)
Q Consensus 564 L~~n~l~~~~p--~~~~~~l~~L~~L~L~~N~l~~~~~---~~l~~l~~L~~L~Ls~ 615 (833)
+++|++++ +| ..+. .+++|++|++++|++++..+ ..+..+++|+.|++++
T Consensus 95 ls~N~i~~-~~~~~~~~-~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 95 LSGNKIKD-LSTIEPLK-KLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp CTTSCCCS-HHHHGGGG-GCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred CCCCcCCC-hHHHHHHh-hCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 88888873 33 4444 57888888888888876554 4677788888887763
No 133
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.53 E-value=2.3e-13 Score=146.97 Aligned_cols=219 Identities=12% Similarity=0.099 Sum_probs=154.2
Q ss_pred cccEEEcCCCcCcCCCCCcccCCCCCcEEEccCCcccccCCCCccCcCCccEEEcccCcCccccCccccCCCCCcEeccC
Q 048006 486 KLTYVDLSSNLLSGKLPDCWWTFDSLVILNLENNSFSGRIPDSMGFLQNIQTLSLHNNRLTGELSSSFRNCSQLRLLDLG 565 (833)
Q Consensus 486 ~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 565 (833)
+|+.+.+.. .++...+.+|.+|++|+.+++.+|.++.....+|. +.+|+.+.+..+ ++.+...+|.+|++|+.+++.
T Consensus 158 ~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~ 234 (401)
T 4fdw_A 158 TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIP 234 (401)
T ss_dssp CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECC
T ss_pred CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecC
Confidence 355555554 44445556777788888888887777766556665 577888888744 666777788888888888887
Q ss_pred CCccCCCCCcchhhcCCccceEEecCCcccccccccccCCCCCCEEeccCCcCc-----ccCCccccccccccccCCCCc
Q 048006 566 KNALYGEIPTWMGESLSNLIVLSLKSNKFHGKIPFQLCQLAFLQVLDLSLNNIS-----GKIPKCFNNFTAMTQERSSDP 640 (833)
Q Consensus 566 ~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~-----~~~p~~~~~l~~L~~l~~~~~ 640 (833)
.+ ++ .++...+.+ .+|+.+.+. +.++..-..+|.++++|+.+++.+|.+. ...+.+|.++++|
T Consensus 235 ~~-l~-~I~~~aF~~-~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L-------- 302 (401)
T 4fdw_A 235 EN-VS-TIGQEAFRE-SGITTVKLP-NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKL-------- 302 (401)
T ss_dssp TT-CC-EECTTTTTT-CCCSEEEEE-TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTC--------
T ss_pred CC-cc-Ccccccccc-CCccEEEeC-CCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccC--------
Confidence 65 44 666666644 678888884 4455555677888888888888877664 2334556555555
Q ss_pred ccccceEEeeccCcchhccccCcccEEEccCCcCCCCCchhhhcccCCcEEECCCccccccCCcccCCCCCCCEEeCCCC
Q 048006 641 TIKDKLMLTWKGSEREYRSTLGLVKSLELSNNNLNGAVPEEIMDLVGLVALNLSKNHLTGQISPKIGQLKSLDFLDLSRN 720 (833)
Q Consensus 641 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N 720 (833)
+.+++. +.++..-...|.++++|+.++|..| ++...+.+|.++ +|+.+++++|
T Consensus 303 ------------------------~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n 355 (401)
T 4fdw_A 303 ------------------------ARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGT 355 (401)
T ss_dssp ------------------------CEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCS
T ss_pred ------------------------CeEEeC-CceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCC
Confidence 777777 3466555667888888888888554 666667788888 8888888888
Q ss_pred cCcccCCccccCCC-CCCEEECcCCcC
Q 048006 721 QLVGGIPSSLSQLS-GLSVMDLSYNNL 746 (833)
Q Consensus 721 ~l~~~~p~~l~~l~-~L~~L~ls~N~l 746 (833)
.+....+..|.+++ .++.+++..+.+
T Consensus 356 ~~~~l~~~~F~~~~~~l~~l~vp~~~~ 382 (401)
T 4fdw_A 356 TPPQVFEKVWYGFPDDITVIRVPAESV 382 (401)
T ss_dssp SCCBCCCSSCCCSCTTCCEEEECGGGH
T ss_pred CCcccccccccCCCCCccEEEeCHHHH
Confidence 88877777777774 677887776654
No 134
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.52 E-value=3.1e-13 Score=146.00 Aligned_cols=265 Identities=11% Similarity=0.097 Sum_probs=141.3
Q ss_pred CCCCcEEECcCCcccccccccccCCCCCcEEEccCCCCCchhhHHHhhcCCccccCCccEEEcccccccccChhhhcCCC
Q 048006 262 MVYLEHLRLSFNELEGGIPKFFGNMCSLITLNLSNNKLSGQLSEIIQNLSSGCLENSLKSLYLENSLTGVISESFFSNIS 341 (833)
Q Consensus 262 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~~~~~~L~~L~L~~~~~~~i~~~~~~~l~ 341 (833)
+..++.+.+.+ .++.+...+|.++ +|+.+.+..+ ++......|.+. +|+.+.+.+ .+..|+..+|.+++
T Consensus 112 ~~~l~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-------~L~~i~lp~-~l~~I~~~aF~~c~ 180 (401)
T 4fdw_A 112 LKGYNEIILPN-SVKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-------TVQEIVFPS-TLEQLKEDIFYYCY 180 (401)
T ss_dssp CSSCSEEECCT-TCCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-------CCCEEECCT-TCCEECSSTTTTCT
T ss_pred cCCccEEEECC-ccCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-------CceEEEeCC-CccEehHHHhhCcc
Confidence 34555555543 2343444455553 5666666554 444444444442 466666643 45566666777777
Q ss_pred CCCEEECcCCccccccCCCccCCccccEEEccCccCCCCCChhhcccccccEEeecCCccccccchhHHhhcccccEEEc
Q 048006 342 NLKELHLANNPLVLKLSHDWVPPFQLIIISLSSCKIGPHFPKWLQTQNQIELLDISNTGISDTIPDWFWNLSNKFSFLDL 421 (833)
Q Consensus 342 ~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~L 421 (833)
+|+.+++..|.+.......|. ..+|+.+.+..+ +......+|.++++|+.+++..+ ++.....+|..
T Consensus 181 ~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~---------- 247 (401)
T 4fdw_A 181 NLKKADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE---------- 247 (401)
T ss_dssp TCCEEECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT----------
T ss_pred cCCeeecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc----------
Confidence 777777777776665555555 355666666532 44444455555555555555443 22222222221
Q ss_pred ccccccccCCccccccCCCCCceecccCcccccCCCCCCCCceeecCCCcccccccccccccCCcccEEEcCCCcCcCCC
Q 048006 422 ASNQIKGKLPNLSSRFGTSNPGIDISSNHFEGLIPPLPSNSSFLNLSKNRFSGSISFLCSISGSKLTYVDLSSNLLSGKL 501 (833)
Q Consensus 422 ~~n~l~~~~p~~~~~~~~~l~~l~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~ls~n~l~~~~ 501 (833)
.+|+.+.+ .+.++...
T Consensus 248 ---------------------------------------------------------------~~L~~i~l-p~~i~~I~ 263 (401)
T 4fdw_A 248 ---------------------------------------------------------------SGITTVKL-PNGVTNIA 263 (401)
T ss_dssp ---------------------------------------------------------------CCCSEEEE-ETTCCEEC
T ss_pred ---------------------------------------------------------------CCccEEEe-CCCccEEC
Confidence 23344444 22233334
Q ss_pred CCcccCCCCCcEEEccCCccc-----ccCCCCccCcCCccEEEcccCcCccccCccccCCCCCcEeccCCCccCCCCCcc
Q 048006 502 PDCWWTFDSLVILNLENNSFS-----GRIPDSMGFLQNIQTLSLHNNRLTGELSSSFRNCSQLRLLDLGKNALYGEIPTW 576 (833)
Q Consensus 502 ~~~~~~l~~L~~L~Ls~N~l~-----~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~ 576 (833)
..+|.+|++|+.+++.+|.+. ...+.+|.++++|+.+.+. +.++.+...+|.+|++|+.+++..+ ++ .++..
T Consensus 264 ~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~-~I~~~ 340 (401)
T 4fdw_A 264 SRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VT-QINFS 340 (401)
T ss_dssp TTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CC-EECTT
T ss_pred hhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-cc-EEcHH
Confidence 445556666666666555443 3444556666666666666 3355555566666666666666443 43 45554
Q ss_pred hhhcCCccceEEecCCcccccccccccCCC-CCCEEeccCCcC
Q 048006 577 MGESLSNLIVLSLKSNKFHGKIPFQLCQLA-FLQVLDLSLNNI 618 (833)
Q Consensus 577 ~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~-~L~~L~Ls~N~l 618 (833)
.+.++ +|+.+++.+|.+....+..|.+++ .++.|.+..+.+
T Consensus 341 aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~ 382 (401)
T 4fdw_A 341 AFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESV 382 (401)
T ss_dssp SSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGH
T ss_pred hCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHH
Confidence 45455 666666666665544445555553 566666665544
No 135
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.50 E-value=5.8e-16 Score=150.85 Aligned_cols=155 Identities=26% Similarity=0.303 Sum_probs=107.6
Q ss_pred ccCCCCCcEeccCCCccCCCCCc------chhhcCCccceEEecCCcccccccccccCCCCCCEEeccCCcCcccCCccc
Q 048006 553 FRNCSQLRLLDLGKNALYGEIPT------WMGESLSNLIVLSLKSNKFHGKIPFQLCQLAFLQVLDLSLNNISGKIPKCF 626 (833)
Q Consensus 553 ~~~l~~L~~L~L~~n~l~~~~p~------~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~ 626 (833)
+.....++.++++.+.+.|.+|. .+. .+++|++|++++|.+++ +| .+..+++|++|++++|+++ .+|..+
T Consensus 14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~-~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~ 89 (198)
T 1ds9_A 14 FEERKSVVATEAEKVELHGMIPPIEKMDATLS-TLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLD 89 (198)
T ss_dssp HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHH-HTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHH
T ss_pred HHhcccccCcchheeEeccccCcHhhhhHHHh-cCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchh
Confidence 34445566666666666665554 444 57777777777777775 55 6777777778888777776 455555
Q ss_pred cccccccccCCCCcccccceEEeeccCcchhccccCcccEEEccCCcCCCCCchhhhcccCCcEEECCCccccccCC-cc
Q 048006 627 NNFTAMTQERSSDPTIKDKLMLTWKGSEREYRSTLGLVKSLELSNNNLNGAVPEEIMDLVGLVALNLSKNHLTGQIS-PK 705 (833)
Q Consensus 627 ~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p-~~ 705 (833)
..+++| +.|++++|++++ +| .+..+++|++|++++|++++..+ ..
T Consensus 90 ~~~~~L--------------------------------~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~ 135 (198)
T 1ds9_A 90 AVADTL--------------------------------EELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDK 135 (198)
T ss_dssp HHHHHC--------------------------------SEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHH
T ss_pred hcCCcC--------------------------------CEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHH
Confidence 444444 788888888875 44 57788888888888888875332 46
Q ss_pred cCCCCCCCEEeCCCCcCcccCCcc----------ccCCCCCCEEECcCCcCc
Q 048006 706 IGQLKSLDFLDLSRNQLVGGIPSS----------LSQLSGLSVMDLSYNNLS 747 (833)
Q Consensus 706 l~~l~~L~~L~Ls~N~l~~~~p~~----------l~~l~~L~~L~ls~N~l~ 747 (833)
+..+++|++|++++|++.+.+|.. +..+++|+.|| +|+++
T Consensus 136 l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 136 LAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD 185 (198)
T ss_dssp HTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred HhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence 778888888888888887766653 67788888876 56554
No 136
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.49 E-value=6e-14 Score=133.65 Aligned_cols=81 Identities=25% Similarity=0.315 Sum_probs=42.7
Q ss_pred cEEEccCCcCCCCCchhhhcccCCcEEECCCccccccCCc--ccCCCCCCCEEeCCCCcCcccCCcc----ccCCCCCCE
Q 048006 665 KSLELSNNNLNGAVPEEIMDLVGLVALNLSKNHLTGQISP--KIGQLKSLDFLDLSRNQLVGGIPSS----LSQLSGLSV 738 (833)
Q Consensus 665 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~--~l~~l~~L~~L~Ls~N~l~~~~p~~----l~~l~~L~~ 738 (833)
+.|++++|++++..+..+..+++|++|+|++|+++ .+|. .+..+++|+.|++++|+++ .+|.. +..+++|++
T Consensus 67 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~ 144 (176)
T 1a9n_A 67 KTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRV 144 (176)
T ss_dssp CEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSE
T ss_pred CEEECCCCcccccCcchhhcCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccce
Confidence 44444444444332333355555555555555554 3333 4555566666666666665 33432 556666666
Q ss_pred EECcCCcCc
Q 048006 739 MDLSYNNLS 747 (833)
Q Consensus 739 L~ls~N~l~ 747 (833)
||+++|...
T Consensus 145 Ld~~~n~~~ 153 (176)
T 1a9n_A 145 LDFQKVKLK 153 (176)
T ss_dssp ETTEECCHH
T ss_pred eCCCcCCHH
Confidence 666666554
No 137
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.46 E-value=2.2e-13 Score=128.56 Aligned_cols=90 Identities=24% Similarity=0.238 Sum_probs=81.8
Q ss_pred ccEEEccCCcCCCCCchhhhcccCCcEEECCCccccccCCcccCCCCCCCEEeCCCCcCcccCCccccCCCCCCEEECcC
Q 048006 664 VKSLELSNNNLNGAVPEEIMDLVGLVALNLSKNHLTGQISPKIGQLKSLDFLDLSRNQLVGGIPSSLSQLSGLSVMDLSY 743 (833)
Q Consensus 664 L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~ 743 (833)
++.|+|++|+|++..|..|..+++|++|+|++|+|++..+..|..+++|++|+|++|+|++..+..|..+++|++|++++
T Consensus 32 l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 111 (170)
T 3g39_A 32 TQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLN 111 (170)
T ss_dssp CSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeCC
Confidence 48899999999988888899999999999999999988777889999999999999999988888899999999999999
Q ss_pred CcCccCCCCc
Q 048006 744 NNLSGKIPTV 753 (833)
Q Consensus 744 N~l~g~ip~~ 753 (833)
|++++.++..
T Consensus 112 N~~~c~c~~l 121 (170)
T 3g39_A 112 NPWDCACSDI 121 (170)
T ss_dssp SCBCTTBGGG
T ss_pred CCCCCCchhH
Confidence 9999988744
No 138
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.45 E-value=1.8e-13 Score=130.36 Aligned_cols=130 Identities=20% Similarity=0.238 Sum_probs=105.3
Q ss_pred CCcccEEEcCCCcCcCCCCCcccCCCCCcEEEccCCcccccCCCCccCcCCccEEEcccCcCccccCccccCCCCCcEec
Q 048006 484 GSKLTYVDLSSNLLSGKLPDCWWTFDSLVILNLENNSFSGRIPDSMGFLQNIQTLSLHNNRLTGELSSSFRNCSQLRLLD 563 (833)
Q Consensus 484 ~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 563 (833)
+++|++|++++|.++. ++......++|++|++++|.+++. ..+..+++|++|++++|++++..+..|..+++|++|+
T Consensus 18 ~~~L~~L~l~~n~l~~-i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 94 (176)
T 1a9n_A 18 AVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELI 94 (176)
T ss_dssp TTSCEEEECTTSCCCS-CCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEE
T ss_pred cCCceEEEeeCCCCch-hHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEE
Confidence 5788999999999885 454333344899999999999875 5788899999999999999976666668899999999
Q ss_pred cCCCccCCCCCc--chhhcCCccceEEecCCccccccccc----ccCCCCCCEEeccCCcCc
Q 048006 564 LGKNALYGEIPT--WMGESLSNLIVLSLKSNKFHGKIPFQ----LCQLAFLQVLDLSLNNIS 619 (833)
Q Consensus 564 L~~n~l~~~~p~--~~~~~l~~L~~L~L~~N~l~~~~~~~----l~~l~~L~~L~Ls~N~l~ 619 (833)
+++|++. .+|. .+. .+++|++|++++|+++ .+|.. +..+++|+.||+++|.+.
T Consensus 95 L~~N~i~-~~~~~~~l~-~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 95 LTNNSLV-ELGDLDPLA-SLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp CCSCCCC-CGGGGGGGG-GCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred CCCCcCC-cchhhHhhh-cCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 9999986 6776 444 6889999999999998 45553 788999999999998875
No 139
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.45 E-value=1.4e-15 Score=148.17 Aligned_cols=133 Identities=23% Similarity=0.260 Sum_probs=82.2
Q ss_pred cccCCCCCcEeccCCCccCCCCCcchhhcCCccceEEecCCcccccccccccCCCCCCEEeccCCcCcccCCcccccccc
Q 048006 552 SFRNCSQLRLLDLGKNALYGEIPTWMGESLSNLIVLSLKSNKFHGKIPFQLCQLAFLQVLDLSLNNISGKIPKCFNNFTA 631 (833)
Q Consensus 552 ~~~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~ 631 (833)
.+..+++|++|++++|++. .+| .+. .+++|++|++++|.++ .+|..+..+++|+.|++++|++++ +| .+..+++
T Consensus 43 ~~~~l~~L~~L~ls~n~l~-~l~-~~~-~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~ 116 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIE-KIS-SLS-GMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKLVN 116 (198)
T ss_dssp HHHHTTTCSEEECSEEEES-CCC-CHH-HHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHH
T ss_pred HHhcCCCCCEEECCCCCCc-ccc-ccc-cCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-ccccCCC
Confidence 5555666666666666665 355 333 4566666666666665 445555555666666666666654 22 3444443
Q ss_pred ccccCCCCcccccceEEeeccCcchhccccCcccEEEccCCcCCCCCc-hhhhcccCCcEEECCCccccccCCcc-----
Q 048006 632 MTQERSSDPTIKDKLMLTWKGSEREYRSTLGLVKSLELSNNNLNGAVP-EEIMDLVGLVALNLSKNHLTGQISPK----- 705 (833)
Q Consensus 632 L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p-~~l~~l~~L~~L~Ls~N~l~~~~p~~----- 705 (833)
| +.|++++|++++..+ ..+..+++|++|++++|.+++.+|..
T Consensus 117 L--------------------------------~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~ 164 (198)
T 1ds9_A 117 L--------------------------------RVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSE 164 (198)
T ss_dssp S--------------------------------SEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHH
T ss_pred C--------------------------------CEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHH
Confidence 3 677777777764322 46777888888888888887665543
Q ss_pred -----cCCCCCCCEEeCCCCcCcc
Q 048006 706 -----IGQLKSLDFLDLSRNQLVG 724 (833)
Q Consensus 706 -----l~~l~~L~~L~Ls~N~l~~ 724 (833)
+..+++|+.|| +|.++.
T Consensus 165 ~~~~~~~~l~~L~~Ld--~~~i~~ 186 (198)
T 1ds9_A 165 YRIEVVKRLPNLKKLD--GMPVDV 186 (198)
T ss_dssp HHHHHHHHCSSCSEEC--CGGGTT
T ss_pred HHHHHHHhCCCcEEEC--CcccCH
Confidence 67778888876 666653
No 140
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.43 E-value=6.1e-13 Score=125.93 Aligned_cols=90 Identities=26% Similarity=0.272 Sum_probs=79.5
Q ss_pred ccEEEccCCcCCCCCchhhhcccCCcEEECCCccccccCCcccCCCCCCCEEeCCCCcCcccCCccccCCCCCCEEECcC
Q 048006 664 VKSLELSNNNLNGAVPEEIMDLVGLVALNLSKNHLTGQISPKIGQLKSLDFLDLSRNQLVGGIPSSLSQLSGLSVMDLSY 743 (833)
Q Consensus 664 L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~ 743 (833)
|+.|+|++|++++..|..|.++++|++|+|++|+|++..+..|..+++|+.|+|++|+|++..+..|..+++|++|++++
T Consensus 35 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~ 114 (174)
T 2r9u_A 35 KQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYN 114 (174)
T ss_dssp CSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCS
T ss_pred CcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEeCC
Confidence 48899999999888888899999999999999999977666789999999999999999977777799999999999999
Q ss_pred CcCccCCCCc
Q 048006 744 NNLSGKIPTV 753 (833)
Q Consensus 744 N~l~g~ip~~ 753 (833)
|++.+.++..
T Consensus 115 N~~~c~~~~~ 124 (174)
T 2r9u_A 115 NPWDCECRDI 124 (174)
T ss_dssp SCBCTTBGGG
T ss_pred CCcccccccH
Confidence 9999877643
No 141
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.42 E-value=4.1e-13 Score=126.74 Aligned_cols=107 Identities=25% Similarity=0.287 Sum_probs=96.6
Q ss_pred cEEEccCCcCCCCCchhhhcccCCcEEECCCccccccCCcccCCCCCCCEEeCCCCcCcccCCccccCCCCCCEEECcCC
Q 048006 665 KSLELSNNNLNGAVPEEIMDLVGLVALNLSKNHLTGQISPKIGQLKSLDFLDLSRNQLVGGIPSSLSQLSGLSVMDLSYN 744 (833)
Q Consensus 665 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N 744 (833)
+.+++++|+++ .+|..+. ++|++|+|++|+|++..|..|..+++|+.|+|++|+|++..|..|..+++|++|++++|
T Consensus 12 ~~l~~s~n~l~-~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 12 TTVDCSGKSLA-SVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcC-ccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence 78999999998 5776653 88999999999999998999999999999999999999888888999999999999999
Q ss_pred cCccCCCC-ccccCccccccccCCCCCCCCC
Q 048006 745 NLSGKIPT-VTQLQSFNDTVYAGNPELCGLP 774 (833)
Q Consensus 745 ~l~g~ip~-~~~~~~l~~~~~~gn~~lc~~~ 774 (833)
+|++..|. ...+..+..+.+.+||+.|+|+
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~ 119 (170)
T 3g39_A 89 QLKSIPRGAFDNLKSLTHIWLLNNPWDCACS 119 (170)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred ccCEeCHHHhcCCCCCCEEEeCCCCCCCCch
Confidence 99987775 4567788889999999999885
No 142
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.41 E-value=5.2e-12 Score=137.18 Aligned_cols=43 Identities=14% Similarity=0.101 Sum_probs=27.0
Q ss_pred cccccccCCCCCcEEECcCCcccccccccccCCCCCcEEEccCC
Q 048006 254 SIPESFQHMVYLEHLRLSFNELEGGIPKFFGNMCSLITLNLSNN 297 (833)
Q Consensus 254 ~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n 297 (833)
....+|.++++|+.+.+..+ ++.+...+|.++++|+.+++..+
T Consensus 62 Ig~~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~ 104 (394)
T 4fs7_A 62 IGYAAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS 104 (394)
T ss_dssp ECTTTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT
T ss_pred hHHHHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC
Confidence 34456777777777777543 55455556777777777776543
No 143
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.41 E-value=9.3e-12 Score=135.21 Aligned_cols=81 Identities=12% Similarity=0.074 Sum_probs=59.6
Q ss_pred cCcccEEEccCCcCCCCCchhhhcccCCcEEECCCccccccCCcccCCCCCCCEEeCCCCcCcccCCccccCCCCCCEEE
Q 048006 661 LGLVKSLELSNNNLNGAVPEEIMDLVGLVALNLSKNHLTGQISPKIGQLKSLDFLDLSRNQLVGGIPSSLSQLSGLSVMD 740 (833)
Q Consensus 661 ~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 740 (833)
+.+|+.+.+..+ ++..-...|.++++|+.+++..+ ++.....+|.++++|+.+++..+ ++.....+|.++++|+.++
T Consensus 296 ~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ 372 (394)
T 4fs7_A 296 CSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVE 372 (394)
T ss_dssp CTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEE
T ss_pred cccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEE
Confidence 344577777654 55444567888888888888654 66566678888888998888776 6666677888888898888
Q ss_pred CcCC
Q 048006 741 LSYN 744 (833)
Q Consensus 741 ls~N 744 (833)
+..+
T Consensus 373 lp~~ 376 (394)
T 4fs7_A 373 LPKR 376 (394)
T ss_dssp EEGG
T ss_pred ECCC
Confidence 8644
No 144
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.39 E-value=8.4e-13 Score=124.97 Aligned_cols=107 Identities=23% Similarity=0.249 Sum_probs=95.9
Q ss_pred cEEEccCCcCCCCCchhhhcccCCcEEECCCccccccCCcccCCCCCCCEEeCCCCcCcccCCccccCCCCCCEEECcCC
Q 048006 665 KSLELSNNNLNGAVPEEIMDLVGLVALNLSKNHLTGQISPKIGQLKSLDFLDLSRNQLVGGIPSSLSQLSGLSVMDLSYN 744 (833)
Q Consensus 665 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N 744 (833)
+.+++++|+++ .+|..+. ++|++|+|++|+|++..|..|..+++|+.|+|++|+|++..+..|..+++|++|++++|
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 78999999997 6777664 89999999999999998999999999999999999999877777899999999999999
Q ss_pred cCccCCCC-ccccCccccccccCCCCCCCCC
Q 048006 745 NLSGKIPT-VTQLQSFNDTVYAGNPELCGLP 774 (833)
Q Consensus 745 ~l~g~ip~-~~~~~~l~~~~~~gn~~lc~~~ 774 (833)
+|++..+. ...+..+..+.+.+||+.|.|.
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~ 122 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPWDCECR 122 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCBCTTBG
T ss_pred ccceeCHHHhccccCCCEEEeCCCCcccccc
Confidence 99987665 4667788889999999999875
No 145
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.30 E-value=5.2e-14 Score=150.57 Aligned_cols=67 Identities=22% Similarity=0.224 Sum_probs=34.8
Q ss_pred ccEEEccCCcCCCC----CchhhhcccCCcEEECCCcccccc----CCcccCCCCCCCEEeCCCCcCcccCCccc
Q 048006 664 VKSLELSNNNLNGA----VPEEIMDLVGLVALNLSKNHLTGQ----ISPKIGQLKSLDFLDLSRNQLVGGIPSSL 730 (833)
Q Consensus 664 L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l 730 (833)
|++|+|++|.+++. ++..+...++|++|+|++|.|+.. ++..+...++|++|||++|.|+......+
T Consensus 185 L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L 259 (372)
T 3un9_A 185 VTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVL 259 (372)
T ss_dssp CCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHH
T ss_pred cCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHH
Confidence 35555555555432 233444555666666666666532 22233344666666666666654433333
No 146
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.24 E-value=1.1e-11 Score=132.30 Aligned_cols=105 Identities=23% Similarity=0.283 Sum_probs=54.9
Q ss_pred EEccCC-cCCCCCchhhhcccCCcEEECCC-ccccccCCcccCCCCCCCEEeCCCCcCcccCCccccCCCCCCEEECcCC
Q 048006 667 LELSNN-NLNGAVPEEIMDLVGLVALNLSK-NHLTGQISPKIGQLKSLDFLDLSRNQLVGGIPSSLSQLSGLSVMDLSYN 744 (833)
Q Consensus 667 L~Ls~n-~l~~~~p~~l~~l~~L~~L~Ls~-N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N 744 (833)
++++++ +++ .+|. +..+++|++|+|++ |+|++..|..|+++++|+.|+|++|+|++..|..|.++++|++|||++|
T Consensus 13 v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 13 LRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp EECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred EEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence 455554 555 3444 55555555555553 5555554455555555555555555555555555555555555555555
Q ss_pred cCccCCCCccccCccccccccCCCCCCCC
Q 048006 745 NLSGKIPTVTQLQSFNDTVYAGNPELCGL 773 (833)
Q Consensus 745 ~l~g~ip~~~~~~~l~~~~~~gn~~lc~~ 773 (833)
+|++.+|.......+..+.+.+|++.|+|
T Consensus 91 ~l~~~~~~~~~~~~L~~l~l~~N~~~c~c 119 (347)
T 2ifg_A 91 ALESLSWKTVQGLSLQELVLSGNPLHCSC 119 (347)
T ss_dssp CCSCCCSTTTCSCCCCEEECCSSCCCCCG
T ss_pred ccceeCHHHcccCCceEEEeeCCCccCCC
Confidence 55544433222122444455555555554
No 147
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.22 E-value=2e-11 Score=130.24 Aligned_cols=86 Identities=24% Similarity=0.142 Sum_probs=61.7
Q ss_pred cEEEccC-CcCCCCCchhhhcccCCcEEECCCccccccCCcccCCCCCCCEEeCCCCcCcccCCccccCCCCCCEEECcC
Q 048006 665 KSLELSN-NNLNGAVPEEIMDLVGLVALNLSKNHLTGQISPKIGQLKSLDFLDLSRNQLVGGIPSSLSQLSGLSVMDLSY 743 (833)
Q Consensus 665 ~~L~Ls~-n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~ 743 (833)
+.|+|++ |+|++..+..|.++++|++|+|++|+|++..|..|.++++|+.|+|++|+|++..+..+..++ |+.|++++
T Consensus 34 ~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~l~~ 112 (347)
T 2ifg_A 34 TELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQELVLSG 112 (347)
T ss_dssp SEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEEECCS
T ss_pred eEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-ceEEEeeC
Confidence 6677764 777666666677777777777777777777777777777777777777777766555565555 77777777
Q ss_pred CcCccCCC
Q 048006 744 NNLSGKIP 751 (833)
Q Consensus 744 N~l~g~ip 751 (833)
|++.+.+.
T Consensus 113 N~~~c~c~ 120 (347)
T 2ifg_A 113 NPLHCSCA 120 (347)
T ss_dssp SCCCCCGG
T ss_pred CCccCCCc
Confidence 77776554
No 148
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.21 E-value=3.3e-13 Score=144.31 Aligned_cols=111 Identities=13% Similarity=0.110 Sum_probs=62.7
Q ss_pred CCccceEEecCCcccc----cccccccCCCCCCEEeccCCcCcccC----CccccccccccccCCCCcccccceEEeecc
Q 048006 581 LSNLIVLSLKSNKFHG----KIPFQLCQLAFLQVLDLSLNNISGKI----PKCFNNFTAMTQERSSDPTIKDKLMLTWKG 652 (833)
Q Consensus 581 l~~L~~L~L~~N~l~~----~~~~~l~~l~~L~~L~Ls~N~l~~~~----p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~ 652 (833)
.++|++|+|++|.++. .++..+..+++|++|+|++|.+.+.. +..+..
T Consensus 154 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~------------------------ 209 (372)
T 3un9_A 154 QCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDR------------------------ 209 (372)
T ss_dssp TCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGG------------------------
T ss_pred CCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhc------------------------
Confidence 3556666666666653 23334456677777777777775422 122222
Q ss_pred CcchhccccCcccEEEccCCcCCCC----CchhhhcccCCcEEECCCccccccCCcccCCC---C--CCCEEe--CCCCc
Q 048006 653 SEREYRSTLGLVKSLELSNNNLNGA----VPEEIMDLVGLVALNLSKNHLTGQISPKIGQL---K--SLDFLD--LSRNQ 721 (833)
Q Consensus 653 ~~~~~~~~~~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l---~--~L~~L~--Ls~N~ 721 (833)
.+.|+.|+|++|.+++. ++..+...++|++|+|++|.|+......+..+ . .|+.+. +..|.
T Consensus 210 --------~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~ 281 (372)
T 3un9_A 210 --------NRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTA 281 (372)
T ss_dssp --------CSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC------CEEECCCC----
T ss_pred --------CCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchhhHhhhcCCc
Confidence 23457888888887643 33445567888899999998876544444332 1 155555 55555
Q ss_pred Cc
Q 048006 722 LV 723 (833)
Q Consensus 722 l~ 723 (833)
+.
T Consensus 282 ~~ 283 (372)
T 3un9_A 282 VS 283 (372)
T ss_dssp CH
T ss_pred cC
Confidence 54
No 149
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.20 E-value=1e-09 Score=119.04 Aligned_cols=128 Identities=14% Similarity=0.175 Sum_probs=69.8
Q ss_pred cCCcccEEEcCCCcCcCCCCCcccCCCCCcEEEccCCcccccCCCCccCcCCccEEEcccCcCccccCccccCCCCCcEe
Q 048006 483 SGSKLTYVDLSSNLLSGKLPDCWWTFDSLVILNLENNSFSGRIPDSMGFLQNIQTLSLHNNRLTGELSSSFRNCSQLRLL 562 (833)
Q Consensus 483 ~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 562 (833)
.+..|+.+.+..+... ....+|.++++|+.+.+. +.++.....+|.++.+|+.+.+..+ ++.+...+|.+|.+|+.+
T Consensus 263 ~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i 339 (394)
T 4gt6_A 263 SCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERI 339 (394)
T ss_dssp TCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEE
T ss_pred ecccccEEecccccce-ecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEE
Confidence 3566666666544332 444556666777777664 3444455556666777777776643 554555667777777777
Q ss_pred ccCCCccCCCCCcchhhcCCccceEEecCCcccccccccccCCCCCCEEeccCCcC
Q 048006 563 DLGKNALYGEIPTWMGESLSNLIVLSLKSNKFHGKIPFQLCQLAFLQVLDLSLNNI 618 (833)
Q Consensus 563 ~L~~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l 618 (833)
.+..+ ++ .+....|.++++|+.+++.++.... ..+....+|+.+.+..+.+
T Consensus 340 ~ip~s-v~-~I~~~aF~~C~~L~~i~~~~~~~~~---~~~~~~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 340 AIPSS-VT-KIPESAFSNCTALNNIEYSGSRSQW---NAISTDSGLQNLPVAPGSI 390 (394)
T ss_dssp EECTT-CC-BCCGGGGTTCTTCCEEEESSCHHHH---HTCBCCCCC----------
T ss_pred EECcc-cC-EEhHhHhhCCCCCCEEEECCceeeh---hhhhccCCCCEEEeCCCCE
Confidence 66543 44 5666556566677777766664331 2445556666666655543
No 150
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.16 E-value=1.7e-09 Score=117.23 Aligned_cols=44 Identities=18% Similarity=0.123 Sum_probs=28.8
Q ss_pred cccccccCCC-CCcEEECcCCcccccccccccCCCCCcEEEccCCC
Q 048006 254 SIPESFQHMV-YLEHLRLSFNELEGGIPKFFGNMCSLITLNLSNNK 298 (833)
Q Consensus 254 ~~p~~~~~l~-~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~ 298 (833)
....+|.+++ .|+.+.+..+ ++.+...+|.++++|+.+.+..|.
T Consensus 54 Ig~~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~ 98 (394)
T 4gt6_A 54 IGDRVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNK 98 (394)
T ss_dssp ECTTTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGC
T ss_pred cCHhhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCC
Confidence 3345666664 4777777653 555556677777778777776653
No 151
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.91 E-value=1e-07 Score=102.75 Aligned_cols=106 Identities=14% Similarity=0.183 Sum_probs=44.9
Q ss_pred ccCCCCCcEEEccCCcccccCCCCccCcCCccEEEcccCcCccccCccccCCCCCcEeccCCCccCCCCCcchhhcCCcc
Q 048006 505 WWTFDSLVILNLENNSFSGRIPDSMGFLQNIQTLSLHNNRLTGELSSSFRNCSQLRLLDLGKNALYGEIPTWMGESLSNL 584 (833)
Q Consensus 505 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L 584 (833)
+..+.+|+.+.+..+ +......+|.++..|+.+.+..+ ++.+...+|.++.+|+.+.+..+ +. .++...+.++++|
T Consensus 213 f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~-~i~~~aF~~c~~L 288 (379)
T 4h09_A 213 FSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VK-TVPYLLCSGCSNL 288 (379)
T ss_dssp TTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CS-EECTTTTTTCTTC
T ss_pred cccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ce-ecccccccccccc
Confidence 334444444444332 22233334444444554444433 33333444444455555444332 22 3333333344444
Q ss_pred ceEEecCCcccccccccccCCCCCCEEecc
Q 048006 585 IVLSLKSNKFHGKIPFQLCQLAFLQVLDLS 614 (833)
Q Consensus 585 ~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls 614 (833)
+.+.+.++.++..-..+|.++.+|+.++|.
T Consensus 289 ~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp 318 (379)
T 4h09_A 289 TKVVMDNSAIETLEPRVFMDCVKLSSVTLP 318 (379)
T ss_dssp CEEEECCTTCCEECTTTTTTCTTCCEEECC
T ss_pred ccccccccccceehhhhhcCCCCCCEEEcC
Confidence 444444444443333444444444444443
No 152
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.85 E-value=2.2e-07 Score=100.08 Aligned_cols=35 Identities=14% Similarity=0.185 Sum_probs=19.7
Q ss_pred ccccChhhhcCCCCCCEEECcCCccccccCCCccCC
Q 048006 329 TGVISESFFSNISNLKELHLANNPLVLKLSHDWVPP 364 (833)
Q Consensus 329 ~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~ 364 (833)
+..|+..+|.++.+|+.+.+..+ ++......|...
T Consensus 57 vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c 91 (379)
T 4h09_A 57 ITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT 91 (379)
T ss_dssp EEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC
T ss_pred ccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC
Confidence 34555666777777777777543 444444444443
No 153
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.85 E-value=6.6e-10 Score=117.52 Aligned_cols=163 Identities=19% Similarity=0.214 Sum_probs=81.7
Q ss_pred cccCCCCCcEeccCCCccCCCCCcchhhcCCccceEEecCCccccccccccc--CCCCCCEEeccC--CcCcccCCcccc
Q 048006 552 SFRNCSQLRLLDLGKNALYGEIPTWMGESLSNLIVLSLKSNKFHGKIPFQLC--QLAFLQVLDLSL--NNISGKIPKCFN 627 (833)
Q Consensus 552 ~~~~l~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~N~l~~~~~~~l~--~l~~L~~L~Ls~--N~l~~~~p~~~~ 627 (833)
.+..+|+|+.|++++|.-. .++. + ..++|+.|++..|.+.......++ .+++|+.|+|+. |...+.. .+.
T Consensus 167 ll~~~P~L~~L~L~g~~~l-~l~~-~--~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~--~~~ 240 (362)
T 2ra8_A 167 VLDAMPLLNNLKIKGTNNL-SIGK-K--PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDG--DMN 240 (362)
T ss_dssp HHHTCTTCCEEEEECCBTC-BCCS-C--BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCS--CGG
T ss_pred HHhcCCCCcEEEEeCCCCc-eecc-c--cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccch--hHH
Confidence 3455667777777666311 2333 1 256777777777766543333333 567777777753 2211110 010
Q ss_pred ccccccccCCCCcccccceEEeeccCcchhccccCcccEEEccCCcCCCCCchhhh---cccCCcEEECCCcccccc---
Q 048006 628 NFTAMTQERSSDPTIKDKLMLTWKGSEREYRSTLGLVKSLELSNNNLNGAVPEEIM---DLVGLVALNLSKNHLTGQ--- 701 (833)
Q Consensus 628 ~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~---~l~~L~~L~Ls~N~l~~~--- 701 (833)
.+..+ .....+++|+.|+|++|.+.+..+..+. .+++|++|+|+.|.+++.
T Consensus 241 ~l~~~-----------------------l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~ 297 (362)
T 2ra8_A 241 VFRPL-----------------------FSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGAR 297 (362)
T ss_dssp GTGGG-----------------------SCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHH
T ss_pred HHHHH-----------------------HhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHH
Confidence 00000 0001245667777777776544333333 356677777777766643
Q ss_pred -CCcccCCCCCCCEEeCCCCcCcccCCccccC-CCCCCEEECcCCc
Q 048006 702 -ISPKIGQLKSLDFLDLSRNQLVGGIPSSLSQ-LSGLSVMDLSYNN 745 (833)
Q Consensus 702 -~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~-l~~L~~L~ls~N~ 745 (833)
++..+..+++|+.|+|++|.++...-..+.. + ...+++++++
T Consensus 298 ~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 298 LLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp HHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC--CSEEECCSBC
T ss_pred HHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc--CCEEEecCCc
Confidence 2223344566777777766665433222322 1 2445565554
No 154
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.63 E-value=5.5e-08 Score=102.80 Aligned_cols=158 Identities=16% Similarity=0.150 Sum_probs=87.7
Q ss_pred cccccCCCCCcEEECcCCcccccccccccCCCCCcEEEccCCCCCchhhHHHh--hcCCccccCCccEEEcc---ccccc
Q 048006 256 PESFQHMVYLEHLRLSFNELEGGIPKFFGNMCSLITLNLSNNKLSGQLSEIIQ--NLSSGCLENSLKSLYLE---NSLTG 330 (833)
Q Consensus 256 p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~--~l~~~~~~~~L~~L~L~---~~~~~ 330 (833)
...+..+++|+.|++++|.-. .++. +. +++|++|++..+.+.......+. .++ +|+.|+|+ ++..+
T Consensus 165 ~~ll~~~P~L~~L~L~g~~~l-~l~~-~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp------~L~~L~L~~~~~~~~~ 235 (362)
T 2ra8_A 165 SPVLDAMPLLNNLKIKGTNNL-SIGK-KP-RPNLKSLEIISGGLPDSVVEDILGSDLP------NLEKLVLYVGVEDYGF 235 (362)
T ss_dssp HHHHHTCTTCCEEEEECCBTC-BCCS-CB-CTTCSEEEEECSBCCHHHHHHHHHSBCT------TCCEEEEECBCGGGTC
T ss_pred HHHHhcCCCCcEEEEeCCCCc-eecc-cc-CCCCcEEEEecCCCChHHHHHHHHccCC------CCcEEEEecccccccc
Confidence 345567788888888877311 1233 33 77888888888887665544454 456 78887772 12111
Q ss_pred c-----cChhhh--cCCCCCCEEECcCCccccccCCCc---cCCccccEEEccCccCCCC----CChhhcccccccEEee
Q 048006 331 V-----ISESFF--SNISNLKELHLANNPLVLKLSHDW---VPPFQLIIISLSSCKIGPH----FPKWLQTQNQIELLDI 396 (833)
Q Consensus 331 ~-----i~~~~~--~~l~~L~~L~L~~n~l~~~~~~~~---~~~~~L~~L~L~~~~l~~~----~~~~l~~l~~L~~L~L 396 (833)
. +.. .+ ..+++|++|++.+|.+.......+ ..+++|++|+|+.|.++.. ++..+..+++|+.|++
T Consensus 236 ~~~~~~l~~-~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L 314 (362)
T 2ra8_A 236 DGDMNVFRP-LFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINM 314 (362)
T ss_dssp CSCGGGTGG-GSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEEC
T ss_pred chhHHHHHH-HHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEEC
Confidence 1 111 12 246788888888777764322222 1345666666666666542 2233345566666666
Q ss_pred cCCccccccchhHHhhcccccEEEccccc
Q 048006 397 SNTGISDTIPDWFWNLSNKFSFLDLASNQ 425 (833)
Q Consensus 397 s~n~i~~~~~~~~~~~~~~L~~L~L~~n~ 425 (833)
++|.|++..-..+.... ...++++.++
T Consensus 315 ~~n~i~d~~~~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 315 KYNYLSDEMKKELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp CSBBCCHHHHHHHHHHC--CSEEECCSBC
T ss_pred CCCcCCHHHHHHHHHHc--CCEEEecCCc
Confidence 66666544444443321 2334555443
No 155
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.42 E-value=3.1e-08 Score=94.33 Aligned_cols=122 Identities=19% Similarity=0.227 Sum_probs=70.5
Q ss_pred ecCccccCCCCCCEEeCCCC-CCCCC---CccccccCCCCCCEEEccCCCCCCC----CCcccCCccccceecccCccCC
Q 048006 78 TISPALLKLHDLRHLNLSFN-DFSGS---PIPEFIGSLSKLRYLDLFGTVFAGP----IPPQLGNLSRLQHLDLGSNYLF 149 (833)
Q Consensus 78 ~~~~~l~~l~~L~~L~Ls~n-~~~~~---~~p~~~~~l~~L~~L~Ls~n~l~~~----~p~~~~~l~~L~~L~Ls~n~~~ 149 (833)
.+...+...+.|++|+|++| .+... .+...+...++|++|+|++|.+... +...+...+.|++|+|++|.+.
T Consensus 27 ~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~ 106 (185)
T 1io0_A 27 TLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFIS 106 (185)
T ss_dssp HHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCC
T ss_pred HHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCC
Confidence 34456777888888998888 77642 1344566678888888888887542 2333445566777777777664
Q ss_pred CCCC---cccccCCCCCcEEec--CCCCCCCC--chhHHhhcCCCCCCEEEccCCCC
Q 048006 150 STGN---LDWLSHLSYLRYLNL--DESNLANS--SDWFQVIGKLHSLKTLSLHSCYL 199 (833)
Q Consensus 150 ~~~~---~~~l~~l~~L~~L~L--s~n~~~~~--~~~~~~l~~l~~L~~L~Ls~n~l 199 (833)
..+. ...+...++|++|++ ++|.+... ..+...+...++|++|+|++|.+
T Consensus 107 ~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 107 GSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp HHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred HHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence 2111 123444555666666 55555432 12333444445555555555443
No 156
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.39 E-value=6.6e-08 Score=92.08 Aligned_cols=84 Identities=19% Similarity=0.235 Sum_probs=47.7
Q ss_pred ccEEEccCCcCCCC----CchhhhcccCCcEEECCCcccccc----CCcccCCCCCCCEEeC--CCCcCccc----CCcc
Q 048006 664 VKSLELSNNNLNGA----VPEEIMDLVGLVALNLSKNHLTGQ----ISPKIGQLKSLDFLDL--SRNQLVGG----IPSS 729 (833)
Q Consensus 664 L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~L--s~N~l~~~----~p~~ 729 (833)
|++|+|++|++... +...+...+.|++|+|++|.|+.. +...+...++|++|+| ++|.+... +...
T Consensus 67 L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~ 146 (185)
T 1io0_A 67 VKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANM 146 (185)
T ss_dssp CCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHH
T ss_pred cCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHH
Confidence 35555555555432 223344455666666666666532 2344555566777777 66776643 2334
Q ss_pred ccCCCCCCEEECcCCcCc
Q 048006 730 LSQLSGLSVMDLSYNNLS 747 (833)
Q Consensus 730 l~~l~~L~~L~ls~N~l~ 747 (833)
+...++|++|++++|++.
T Consensus 147 L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 147 LEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHCSSCCEEECCCSSHH
T ss_pred HHhCCCcCEEeccCCCCC
Confidence 444567777777777664
No 157
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.27 E-value=5.5e-07 Score=89.94 Aligned_cols=78 Identities=28% Similarity=0.321 Sum_probs=42.0
Q ss_pred cCcccEEEccCCcCCC--CCchhhhcccCCcEEECCCccccccCCcccCCCC--CCCEEeCCCCcCcccCCc-------c
Q 048006 661 LGLVKSLELSNNNLNG--AVPEEIMDLVGLVALNLSKNHLTGQISPKIGQLK--SLDFLDLSRNQLVGGIPS-------S 729 (833)
Q Consensus 661 ~~~L~~L~Ls~n~l~~--~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~--~L~~L~Ls~N~l~~~~p~-------~ 729 (833)
++.|+.|+|++|+|++ .+|..+..+++|+.|+|++|+|++. ..+..+. +|++|+|++|.+.+.+|. .
T Consensus 169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~i 246 (267)
T 3rw6_A 169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAI 246 (267)
T ss_dssp CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHH
T ss_pred CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHHHH
Confidence 4445666666666665 3345555666666666666666643 2233333 566666666666554442 2
Q ss_pred ccCCCCCCEEE
Q 048006 730 LSQLSGLSVMD 740 (833)
Q Consensus 730 l~~l~~L~~L~ 740 (833)
+..+++|+.||
T Consensus 247 l~~~P~L~~LD 257 (267)
T 3rw6_A 247 RERFPKLLRLD 257 (267)
T ss_dssp HHHCTTCCEES
T ss_pred HHHCcccCeEC
Confidence 34455555554
No 158
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.26 E-value=1.7e-07 Score=93.70 Aligned_cols=39 Identities=23% Similarity=0.385 Sum_probs=18.5
Q ss_pred CCccceEEecCCcccc--cccccccCCCCCCEEeccCCcCc
Q 048006 581 LSNLIVLSLKSNKFHG--KIPFQLCQLAFLQVLDLSLNNIS 619 (833)
Q Consensus 581 l~~L~~L~L~~N~l~~--~~~~~l~~l~~L~~L~Ls~N~l~ 619 (833)
+++|++|+|++|++++ .+|..+..+++|+.|+|++|+|+
T Consensus 169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~ 209 (267)
T 3rw6_A 169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELK 209 (267)
T ss_dssp CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCC
T ss_pred CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccC
Confidence 4455555555555544 22333344445555555555444
No 159
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.87 E-value=3.3e-06 Score=77.91 Aligned_cols=35 Identities=6% Similarity=0.016 Sum_probs=19.1
Q ss_pred CCCEEeCCCCCCCCCCccccccCCCCCCEEEccCCC
Q 048006 88 DLRHLNLSFNDFSGSPIPEFIGSLSKLRYLDLFGTV 123 (833)
Q Consensus 88 ~L~~L~Ls~n~~~~~~~p~~~~~l~~L~~L~Ls~n~ 123 (833)
.|++||++++.++.. --..+..+++|++|+|++|.
T Consensus 62 ~L~~LDLs~~~Itd~-GL~~L~~~~~L~~L~L~~C~ 96 (176)
T 3e4g_A 62 KIQAIDATDSCIMSI-GFDHMEGLQYVEKIRLCKCH 96 (176)
T ss_dssp CEEEEEEESCCCCGG-GGGGGTTCSCCCEEEEESCT
T ss_pred eEeEEeCcCCCccHH-HHHHhcCCCCCCEEEeCCCC
Confidence 466666666665543 22334555666666666553
No 160
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.57 E-value=6.3e-05 Score=69.34 Aligned_cols=34 Identities=3% Similarity=-0.079 Sum_probs=15.9
Q ss_pred CCcEEECcCCcccccccccccCCCCCcEEEccCC
Q 048006 264 YLEHLRLSFNELEGGIPKFFGNMCSLITLNLSNN 297 (833)
Q Consensus 264 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n 297 (833)
.|++||+++|.++...-..+..+++|++|+|++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C 95 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKC 95 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCC
Confidence 3444444444444333333444555555555554
No 161
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.30 E-value=0.00033 Score=61.58 Aligned_cols=95 Identities=16% Similarity=0.099 Sum_probs=64.9
Q ss_pred cEEECCCcccc-ccCCcccCCCCCCCEEeCCCCcCcccCCccccCCCCCCEEECcCCcCccCCCCccccCccccccccCC
Q 048006 689 VALNLSKNHLT-GQISPKIGQLKSLDFLDLSRNQLVGGIPSSLSQLSGLSVMDLSYNNLSGKIPTVTQLQSFNDTVYAGN 767 (833)
Q Consensus 689 ~~L~Ls~N~l~-~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~l~~~~~~gn 767 (833)
..++.+++.++ ..+|..+. ++|+.|+|++|+|+...+..|..+++|++|+|++|++.+..-......++.....
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~CdC~l~~l~~wl~~~~~--- 85 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCDCRLVPLRAWLAGRPE--- 85 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBCSGGGHHHHHHHHTSSC---
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeeccCccHHHHHHHHhCcc---
Confidence 47899999997 46676554 5799999999999988788899999999999999999876543222222211100
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCc
Q 048006 768 PELCGLPLPNKCRDEESAAGPGIT 791 (833)
Q Consensus 768 ~~lc~~~~~~~c~~~~~~~~~~~~ 791 (833)
... .....|..|...++....
T Consensus 86 ~~~---~~~~~C~~P~~l~g~~l~ 106 (130)
T 3rfe_A 86 RAP---YRDLRCVAPPALRGRLLP 106 (130)
T ss_dssp SGG---GTTCBCCBSTTTTTCBGG
T ss_pred ccc---ccCcEeCcChHHcCCCcc
Confidence 000 113468887777775554
No 162
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.16 E-value=0.0007 Score=59.47 Aligned_cols=57 Identities=21% Similarity=0.247 Sum_probs=44.6
Q ss_pred cEEEccCCcCC-CCCchhhhcccCCcEEECCCccccccCCcccCCCCCCCEEeCCCCcCc
Q 048006 665 KSLELSNNNLN-GAVPEEIMDLVGLVALNLSKNHLTGQISPKIGQLKSLDFLDLSRNQLV 723 (833)
Q Consensus 665 ~~L~Ls~n~l~-~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 723 (833)
..++.+++.++ ..+|..+. .+|++|+|++|+|+...+..|..+++|+.|+|++|.+.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 57888888886 35564332 46889999999998777777888899999999999875
No 163
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.07 E-value=0.00021 Score=67.18 Aligned_cols=83 Identities=17% Similarity=0.224 Sum_probs=48.8
Q ss_pred ccEEEccCCcCCC----CCchhhhcccCCcEEECCCcccccc----CCcccCCCCCCCEEeCCCCc---Ccc----cCCc
Q 048006 664 VKSLELSNNNLNG----AVPEEIMDLVGLVALNLSKNHLTGQ----ISPKIGQLKSLDFLDLSRNQ---LVG----GIPS 728 (833)
Q Consensus 664 L~~L~Ls~n~l~~----~~p~~l~~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~Ls~N~---l~~----~~p~ 728 (833)
|+.|+|++|++.+ .+.+.+..-+.|++|+|++|.|+.. +-+.+..-+.|++|+|++|. +.. .+.+
T Consensus 72 L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~ 151 (197)
T 1pgv_A 72 IEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMM 151 (197)
T ss_dssp CCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHH
T ss_pred cCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHH
Confidence 3566666666643 2334455566777777777777633 22344555678888887653 232 1233
Q ss_pred cccCCCCCCEEECcCCcC
Q 048006 729 SLSQLSGLSVMDLSYNNL 746 (833)
Q Consensus 729 ~l~~l~~L~~L~ls~N~l 746 (833)
.+..-+.|+.|++++|.+
T Consensus 152 aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 152 AIEENESLLRVGISFASM 169 (197)
T ss_dssp HHHHCSSCCEEECCCCCH
T ss_pred HHHhCCCcCeEeccCCCc
Confidence 455556788888877654
No 164
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.70 E-value=0.0019 Score=60.71 Aligned_cols=18 Identities=22% Similarity=0.272 Sum_probs=10.5
Q ss_pred cCCCCCCEEECcCCcccc
Q 048006 338 SNISNLKELHLANNPLVL 355 (833)
Q Consensus 338 ~~l~~L~~L~L~~n~l~~ 355 (833)
..-+.|++|+|++|.|..
T Consensus 95 ~~N~tL~~L~L~~N~Ig~ 112 (197)
T 1pgv_A 95 ETSPSLRVLNVESNFLTP 112 (197)
T ss_dssp HHCSSCCEEECCSSBCCH
T ss_pred hcCCccCeEecCCCcCCH
Confidence 344566666666666654
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=36.42 E-value=75 Score=25.46 Aligned_cols=44 Identities=9% Similarity=-0.003 Sum_probs=21.3
Q ss_pred cCCCCCcccCCCCCcEEEccCCcccccCCCCccCcCCccEEEccc
Q 048006 498 SGKLPDCWWTFDSLVILNLENNSFSGRIPDSMGFLQNIQTLSLHN 542 (833)
Q Consensus 498 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~ 542 (833)
+.+-..+|.+|.+|+.+.+-.+ ++.+-..+|.++.+|+.+.+.+
T Consensus 9 t~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 9 VGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred CEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 3334445555555555555433 2223334455555555555543
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=34.67 E-value=38 Score=27.25 Aligned_cols=42 Identities=17% Similarity=0.144 Sum_probs=21.6
Q ss_pred cCCCCccCcCCccEEEcccCcCccccCccccCCCCCcEeccCC
Q 048006 524 RIPDSMGFLQNIQTLSLHNNRLTGELSSSFRNCSQLRLLDLGK 566 (833)
Q Consensus 524 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 566 (833)
+-..+|.++.+|+.+.+-.+ ++.+-..+|.+|.+|+.+.+.+
T Consensus 11 I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 11 MDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp SCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred ecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 33445555566665555543 3334445555555555555543
Done!