Query 048009
Match_columns 531
No_of_seqs 267 out of 2369
Neff 10.6
Searched_HMMs 46136
Date Fri Mar 29 05:24:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048009.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048009hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4254 Phytoene desaturase [C 100.0 3.8E-69 8.2E-74 492.9 40.5 511 1-526 1-546 (561)
2 TIGR02734 crtI_fam phytoene de 100.0 3.7E-55 8.1E-60 447.3 39.2 470 20-529 1-495 (502)
3 TIGR02730 carot_isom carotene 100.0 6.6E-52 1.4E-56 420.8 43.4 467 18-527 1-493 (493)
4 TIGR02733 desat_CrtD C-3',4' d 100.0 7.4E-51 1.6E-55 414.2 41.2 454 18-525 2-491 (492)
5 COG1233 Phytoene dehydrogenase 100.0 1.5E-50 3.2E-55 406.5 37.3 449 15-527 1-482 (487)
6 PLN02612 phytoene desaturase 100.0 1.1E-32 2.4E-37 281.8 33.2 432 16-528 92-550 (567)
7 PRK07233 hypothetical protein; 100.0 7.2E-31 1.6E-35 265.2 32.9 416 19-528 1-433 (434)
8 TIGR02732 zeta_caro_desat caro 100.0 1.1E-29 2.4E-34 255.0 28.8 442 19-523 1-474 (474)
9 PLN02487 zeta-carotene desatur 100.0 2.9E-29 6.2E-34 253.0 30.5 453 16-526 74-553 (569)
10 TIGR02731 phytoene_desat phyto 100.0 2.3E-29 4.9E-34 254.2 28.8 421 19-523 1-453 (453)
11 PRK11883 protoporphyrinogen ox 100.0 2.3E-28 5E-33 248.0 29.3 418 18-524 1-450 (451)
12 COG1232 HemY Protoporphyrinoge 100.0 2.6E-27 5.6E-32 228.4 27.6 416 18-523 1-443 (444)
13 TIGR00562 proto_IX_ox protopor 100.0 3E-27 6.6E-32 240.0 27.9 419 17-526 2-460 (462)
14 PRK12416 protoporphyrinogen ox 100.0 1.1E-26 2.4E-31 235.4 30.0 426 18-527 2-462 (463)
15 PRK07208 hypothetical protein; 100.0 4E-26 8.6E-31 232.5 33.2 420 15-525 2-460 (479)
16 PLN02576 protoporphyrinogen ox 99.9 2.3E-25 5E-30 227.9 31.6 431 16-528 11-489 (496)
17 PLN02268 probable polyamine ox 99.9 5.8E-25 1.3E-29 221.2 28.7 234 231-526 195-434 (435)
18 PLN02676 polyamine oxidase 99.9 1.6E-24 3.6E-29 217.7 28.6 243 233-528 220-475 (487)
19 PLN02568 polyamine oxidase 99.9 2.5E-24 5.4E-29 217.6 28.4 101 229-334 234-339 (539)
20 PLN02529 lysine-specific histo 99.9 1.6E-23 3.6E-28 215.4 32.5 239 228-528 348-600 (738)
21 COG1231 Monoamine oxidase [Ami 99.9 1.4E-23 3.1E-28 197.1 27.3 240 231-527 203-448 (450)
22 PLN02328 lysine-specific histo 99.9 1.3E-23 2.7E-28 217.0 28.7 239 229-529 429-682 (808)
23 KOG0685 Flavin-containing amin 99.9 2.1E-23 4.5E-28 195.5 25.9 257 232-528 218-493 (498)
24 PLN03000 amine oxidase 99.9 3.6E-23 7.7E-28 213.3 30.1 237 229-528 373-625 (881)
25 PF01593 Amino_oxidase: Flavin 99.9 3.3E-25 7.1E-30 225.1 12.3 238 232-523 207-450 (450)
26 PLN02976 amine oxidase 99.9 3.1E-22 6.8E-27 211.6 29.8 240 229-527 928-1187(1713)
27 COG3349 Uncharacterized conser 99.9 5.1E-23 1.1E-27 197.4 21.8 435 18-527 1-464 (485)
28 TIGR03467 HpnE squalene-associ 99.9 6.3E-23 1.4E-27 206.4 23.7 399 31-524 1-419 (419)
29 KOG0029 Amine oxidase [Seconda 99.9 5E-22 1.1E-26 197.0 27.6 236 231-527 213-460 (501)
30 COG3380 Predicted NAD/FAD-depe 99.8 2.2E-20 4.9E-25 161.9 14.3 92 233-333 104-198 (331)
31 PTZ00363 rab-GDP dissociation 99.8 2.6E-17 5.7E-22 161.9 28.0 121 173-293 165-288 (443)
32 COG2907 Predicted NAD/FAD-bind 99.8 9.8E-19 2.1E-23 156.9 15.2 268 14-328 5-303 (447)
33 KOG1276 Protoporphyrinogen oxi 99.7 5.5E-17 1.2E-21 150.1 16.3 240 231-523 243-490 (491)
34 PRK13977 myosin-cross-reactive 99.7 7.1E-16 1.5E-20 152.9 14.1 58 16-73 21-83 (576)
35 COG2081 Predicted flavoprotein 99.6 8.1E-15 1.8E-19 136.1 14.7 63 231-295 104-167 (408)
36 KOG2820 FAD-dependent oxidored 99.6 1.6E-13 3.5E-18 123.4 21.1 65 237-303 153-218 (399)
37 PF01266 DAO: FAD dependent ox 99.6 2.3E-14 5E-19 141.0 14.4 68 231-302 138-208 (358)
38 PRK11259 solA N-methyltryptoph 99.6 1.5E-12 3.3E-17 128.8 26.4 61 237-302 149-209 (376)
39 TIGR01377 soxA_mon sarcosine o 99.6 2.6E-12 5.6E-17 127.4 26.3 56 237-295 145-200 (380)
40 TIGR01373 soxB sarcosine oxida 99.5 7.3E-12 1.6E-16 125.1 28.4 58 237-295 183-240 (407)
41 COG0579 Predicted dehydrogenas 99.5 5.5E-13 1.2E-17 128.5 16.3 58 237-295 153-211 (429)
42 PRK12409 D-amino acid dehydrog 99.5 1.3E-11 2.8E-16 123.4 26.4 57 237-295 197-258 (410)
43 PRK00711 D-amino acid dehydrog 99.5 9.8E-12 2.1E-16 124.8 25.4 58 236-295 200-257 (416)
44 PF03486 HI0933_like: HI0933-l 99.5 2.9E-13 6.2E-18 132.1 13.8 60 235-295 107-166 (409)
45 PF13450 NAD_binding_8: NAD(P) 99.5 8.6E-14 1.9E-18 98.8 5.2 54 22-76 1-54 (68)
46 TIGR03329 Phn_aa_oxid putative 99.4 3.8E-12 8.2E-17 128.7 16.7 60 237-302 183-242 (460)
47 PTZ00383 malate:quinone oxidor 99.4 5E-12 1.1E-16 126.7 16.9 57 237-295 211-273 (497)
48 PRK11728 hydroxyglutarate oxid 99.4 5.2E-12 1.1E-16 125.4 16.0 56 237-295 149-204 (393)
49 PRK11101 glpA sn-glycerol-3-ph 99.4 6.5E-12 1.4E-16 129.0 17.0 62 237-301 149-215 (546)
50 COG0665 DadA Glycine/D-amino a 99.4 1.3E-10 2.8E-15 115.6 25.0 56 237-295 156-212 (387)
51 PRK01747 mnmC bifunctional tRN 99.4 1E-11 2.2E-16 131.1 17.6 61 237-302 408-468 (662)
52 PRK06116 glutathione reductase 99.4 4.7E-13 1E-17 135.2 5.0 59 236-295 207-265 (450)
53 COG1249 Lpd Pyruvate/2-oxoglut 99.3 1.4E-12 3E-17 128.2 7.2 252 16-295 3-272 (454)
54 TIGR03364 HpnW_proposed FAD de 99.3 1.6E-11 3.6E-16 120.8 14.8 57 237-302 145-202 (365)
55 TIGR01421 gluta_reduc_1 glutat 99.3 8.5E-13 1.8E-17 132.7 5.4 48 17-65 2-49 (450)
56 PRK05249 soluble pyridine nucl 99.3 1.3E-12 2.7E-17 132.7 6.5 58 236-295 215-272 (461)
57 PRK04176 ribulose-1,5-biphosph 99.3 1.9E-11 4.1E-16 112.4 12.3 61 237-297 104-175 (257)
58 COG0578 GlpA Glycerol-3-phosph 99.3 5.7E-11 1.2E-15 117.1 16.2 61 238-302 165-230 (532)
59 TIGR00292 thiazole biosynthesi 99.3 2.9E-11 6.3E-16 110.8 12.0 62 238-300 101-175 (254)
60 COG1635 THI4 Ribulose 1,5-bisp 99.3 4.9E-11 1.1E-15 101.2 12.1 41 17-57 30-70 (262)
61 TIGR01424 gluta_reduc_2 glutat 99.3 2.8E-12 6E-17 129.1 4.9 48 17-65 2-49 (446)
62 PLN02546 glutathione reductase 99.3 4.8E-12 1E-16 129.0 6.6 53 15-67 77-138 (558)
63 PLN02464 glycerol-3-phosphate 99.3 4.6E-11 1E-15 124.1 13.9 59 237-295 232-296 (627)
64 PRK10157 putative oxidoreducta 99.3 5.6E-11 1.2E-15 118.7 13.4 61 238-300 109-169 (428)
65 TIGR00136 gidA glucose-inhibit 99.3 2.8E-10 6.1E-15 114.5 18.2 57 238-295 97-154 (617)
66 PRK06416 dihydrolipoamide dehy 99.3 4.3E-12 9.2E-17 128.8 5.3 49 16-65 3-51 (462)
67 TIGR01350 lipoamide_DH dihydro 99.3 3.6E-12 7.8E-17 129.4 4.7 48 17-65 1-48 (461)
68 PRK08274 tricarballylate dehyd 99.3 6.1E-11 1.3E-15 120.5 13.6 63 232-295 126-192 (466)
69 PRK12266 glpD glycerol-3-phosp 99.3 1.4E-10 3.1E-15 118.1 16.2 57 237-295 155-216 (508)
70 PRK06481 fumarate reductase fl 99.2 1.4E-10 3E-15 118.4 15.5 58 237-295 190-251 (506)
71 PRK07251 pyridine nucleotide-d 99.2 1.1E-11 2.3E-16 124.9 7.0 49 16-64 2-51 (438)
72 TIGR01320 mal_quin_oxido malat 99.2 8.4E-11 1.8E-15 118.4 13.4 58 237-295 178-240 (483)
73 TIGR00031 UDP-GALP_mutase UDP- 99.2 4.8E-11 1E-15 115.0 11.1 65 17-82 1-66 (377)
74 PRK07818 dihydrolipoamide dehy 99.2 1E-11 2.2E-16 125.9 6.6 47 17-64 4-50 (466)
75 PRK06115 dihydrolipoamide dehy 99.2 5.1E-12 1.1E-16 127.8 4.4 50 16-65 2-51 (466)
76 TIGR01423 trypano_reduc trypan 99.2 1.4E-11 3.1E-16 124.2 7.6 259 16-295 2-288 (486)
77 PRK13369 glycerol-3-phosphate 99.2 9.2E-11 2E-15 119.7 13.6 57 237-295 155-215 (502)
78 PRK06370 mercuric reductase; V 99.2 1.6E-11 3.4E-16 124.5 6.6 49 15-64 3-51 (463)
79 COG0644 FixC Dehydrogenases (f 99.2 7.3E-11 1.6E-15 116.9 10.6 65 238-303 96-160 (396)
80 PLN02507 glutathione reductase 99.2 1.7E-11 3.8E-16 124.4 6.1 58 236-295 243-300 (499)
81 PRK12845 3-ketosteroid-delta-1 99.2 1E-09 2.2E-14 112.8 18.9 64 231-296 212-279 (564)
82 PF00890 FAD_binding_2: FAD bi 99.2 2E-10 4.4E-15 115.2 12.9 60 235-295 139-203 (417)
83 KOG2844 Dimethylglycine dehydr 99.2 1E-08 2.3E-13 100.8 23.9 57 237-295 187-243 (856)
84 TIGR01813 flavo_cyto_c flavocy 99.2 2.5E-10 5.4E-15 115.2 13.3 60 237-296 130-193 (439)
85 PF01946 Thi4: Thi4 family; PD 99.2 1.3E-10 2.8E-15 99.5 9.5 42 16-57 16-57 (230)
86 PRK08010 pyridine nucleotide-d 99.2 3E-11 6.4E-16 121.8 6.6 48 16-63 2-50 (441)
87 PTZ00058 glutathione reductase 99.2 3.5E-11 7.6E-16 122.7 7.1 52 15-67 46-97 (561)
88 COG0654 UbiH 2-polyprenyl-6-me 99.2 4.4E-09 9.5E-14 104.1 21.8 65 236-302 103-169 (387)
89 PRK10015 oxidoreductase; Provi 99.2 2.5E-10 5.3E-15 114.0 12.8 60 238-299 109-168 (429)
90 PRK05976 dihydrolipoamide dehy 99.2 1.4E-11 2.9E-16 125.2 3.9 49 16-65 3-51 (472)
91 PRK13339 malate:quinone oxidor 99.2 8.9E-10 1.9E-14 110.2 16.3 58 237-295 184-247 (497)
92 PRK07121 hypothetical protein; 99.2 1.1E-09 2.3E-14 112.0 17.2 61 235-295 175-239 (492)
93 PLN02172 flavin-containing mon 99.2 5.3E-10 1.1E-14 111.9 14.5 43 16-58 9-51 (461)
94 PRK05257 malate:quinone oxidor 99.2 5E-10 1.1E-14 112.9 14.1 58 237-295 183-246 (494)
95 KOG1335 Dihydrolipoamide dehyd 99.2 1E-11 2.2E-16 113.7 1.7 260 16-295 38-314 (506)
96 PTZ00052 thioredoxin reductase 99.1 5.3E-11 1.1E-15 121.1 7.0 58 236-295 221-278 (499)
97 PF13738 Pyr_redox_3: Pyridine 99.1 1.3E-10 2.7E-15 104.3 8.1 56 238-295 83-138 (203)
98 PRK06327 dihydrolipoamide dehy 99.1 4.4E-11 9.6E-16 121.4 5.6 59 235-295 222-284 (475)
99 PRK12842 putative succinate de 99.1 1.9E-09 4.1E-14 111.8 17.4 58 237-295 214-275 (574)
100 PRK08773 2-octaprenyl-3-methyl 99.1 7E-10 1.5E-14 110.3 13.4 63 237-301 113-175 (392)
101 PRK06134 putative FAD-binding 99.1 2.9E-09 6.4E-14 110.4 18.3 58 237-295 217-278 (581)
102 PRK07190 hypothetical protein; 99.1 6.3E-10 1.4E-14 112.6 13.1 63 238-302 110-172 (487)
103 PRK06847 hypothetical protein; 99.1 8E-10 1.7E-14 109.4 13.2 63 237-301 107-169 (375)
104 PRK14694 putative mercuric red 99.1 1.2E-10 2.6E-15 118.0 6.8 51 13-64 2-52 (468)
105 PRK06834 hypothetical protein; 99.1 1.2E-09 2.5E-14 110.9 13.8 62 238-301 101-162 (488)
106 PRK06184 hypothetical protein; 99.1 1.1E-09 2.4E-14 112.3 13.4 63 238-302 110-175 (502)
107 PRK07573 sdhA succinate dehydr 99.1 1.4E-09 3E-14 113.5 14.0 55 240-295 173-232 (640)
108 PRK14727 putative mercuric red 99.1 8.6E-11 1.9E-15 119.3 4.9 50 15-64 14-63 (479)
109 PRK06467 dihydrolipoamide dehy 99.1 5.8E-11 1.3E-15 120.2 3.6 49 16-64 3-51 (471)
110 PRK13748 putative mercuric red 99.1 1.5E-10 3.3E-15 120.4 6.5 49 16-65 97-145 (561)
111 PRK07333 2-octaprenyl-6-methox 99.1 1.2E-09 2.5E-14 109.3 12.5 64 237-302 111-174 (403)
112 TIGR02032 GG-red-SF geranylger 99.1 7.7E-10 1.7E-14 105.6 10.4 63 237-301 91-154 (295)
113 PRK07045 putative monooxygenas 99.0 1.2E-09 2.6E-14 108.4 11.6 63 238-300 107-170 (388)
114 PRK08163 salicylate hydroxylas 99.0 2.4E-09 5.2E-14 106.8 13.6 63 237-301 109-172 (396)
115 PRK12835 3-ketosteroid-delta-1 99.0 4.5E-09 9.8E-14 108.7 15.7 60 237-296 213-276 (584)
116 PTZ00139 Succinate dehydrogena 99.0 2.7E-09 5.9E-14 110.9 14.2 59 237-295 166-229 (617)
117 TIGR02053 MerA mercuric reduct 99.0 7.2E-11 1.6E-15 119.8 2.4 46 18-64 1-46 (463)
118 TIGR01292 TRX_reduct thioredox 99.0 2.8E-09 6E-14 102.1 13.2 54 239-295 59-112 (300)
119 TIGR01988 Ubi-OHases Ubiquinon 99.0 1.3E-09 2.8E-14 108.4 11.0 64 237-302 106-170 (385)
120 PRK07843 3-ketosteroid-delta-1 99.0 4.2E-09 9.1E-14 108.7 15.0 59 237-296 208-270 (557)
121 TIGR01438 TGR thioredoxin and 99.0 3E-10 6.6E-15 114.9 6.4 257 17-295 2-279 (484)
122 PRK06452 sdhA succinate dehydr 99.0 3.7E-09 8.1E-14 109.1 14.5 58 237-295 136-198 (566)
123 PRK08958 sdhA succinate dehydr 99.0 2.9E-09 6.3E-14 110.2 13.4 59 237-295 143-206 (588)
124 PRK05714 2-octaprenyl-3-methyl 99.0 4.2E-09 9.1E-14 105.2 14.1 65 237-303 112-176 (405)
125 PF00996 GDI: GDP dissociation 99.0 8.2E-09 1.8E-13 100.7 15.5 64 225-289 220-283 (438)
126 PRK07364 2-octaprenyl-6-methox 99.0 2.7E-09 5.8E-14 107.1 12.6 64 237-302 121-188 (415)
127 PLN02661 Putative thiazole syn 99.0 7.6E-09 1.6E-13 97.4 14.6 42 16-57 91-133 (357)
128 PRK09078 sdhA succinate dehydr 99.0 4.2E-09 9.1E-14 109.4 14.2 59 237-295 149-212 (598)
129 PRK05192 tRNA uridine 5-carbox 99.0 2.3E-09 5E-14 108.2 11.7 56 238-295 101-157 (618)
130 KOG2853 Possible oxidoreductas 99.0 1.3E-07 2.9E-12 85.8 21.5 37 16-52 85-125 (509)
131 KOG2404 Fumarate reductase, fl 99.0 9.4E-09 2E-13 92.3 14.0 40 18-57 10-49 (477)
132 PLN00128 Succinate dehydrogena 99.0 4.3E-09 9.2E-14 109.5 13.9 59 237-295 187-250 (635)
133 PRK12843 putative FAD-binding 99.0 7.9E-09 1.7E-13 107.1 15.8 59 237-296 221-283 (578)
134 TIGR00275 flavoprotein, HI0933 99.0 3.6E-09 7.9E-14 104.7 12.5 57 236-295 104-160 (400)
135 PF01134 GIDA: Glucose inhibit 99.0 2.1E-09 4.5E-14 102.8 10.2 55 238-294 96-151 (392)
136 PRK12844 3-ketosteroid-delta-1 99.0 1.8E-08 3.8E-13 104.0 17.8 59 237-296 208-270 (557)
137 PLN02697 lycopene epsilon cycl 99.0 3.6E-09 7.7E-14 106.9 12.3 57 237-295 192-248 (529)
138 PRK07057 sdhA succinate dehydr 99.0 6.4E-09 1.4E-13 107.9 14.6 59 237-295 148-211 (591)
139 PRK12837 3-ketosteroid-delta-1 99.0 1.1E-08 2.3E-13 104.8 15.9 58 237-295 173-235 (513)
140 PRK07588 hypothetical protein; 99.0 4.9E-09 1.1E-13 104.3 13.0 61 238-301 104-164 (391)
141 TIGR02485 CobZ_N-term precorri 99.0 1.1E-08 2.4E-13 102.8 15.7 65 231-295 117-183 (432)
142 PRK05945 sdhA succinate dehydr 99.0 2.3E-09 5.1E-14 111.1 11.1 58 237-295 135-197 (575)
143 PRK07804 L-aspartate oxidase; 99.0 8.9E-09 1.9E-13 105.9 15.2 59 237-295 144-210 (541)
144 PRK12839 hypothetical protein; 99.0 1.1E-08 2.4E-13 105.5 15.8 60 237-296 214-277 (572)
145 PRK06175 L-aspartate oxidase; 99.0 5.2E-09 1.1E-13 104.5 12.9 58 237-295 128-189 (433)
146 TIGR01984 UbiH 2-polyprenyl-6- 99.0 3.5E-09 7.7E-14 105.0 11.5 64 237-302 105-169 (382)
147 COG2509 Uncharacterized FAD-de 99.0 1.6E-07 3.6E-12 89.1 21.7 57 237-294 173-229 (486)
148 TIGR01812 sdhA_frdA_Gneg succi 99.0 1.4E-08 3E-13 105.6 16.3 58 237-295 129-191 (566)
149 PRK08013 oxidoreductase; Provi 99.0 3E-09 6.5E-14 105.9 10.7 63 238-302 112-175 (400)
150 PRK06292 dihydrolipoamide dehy 99.0 7.6E-10 1.6E-14 112.4 6.4 49 15-64 1-49 (460)
151 PRK07845 flavoprotein disulfid 99.0 5E-10 1.1E-14 113.4 5.0 58 236-295 217-274 (466)
152 PLN02463 lycopene beta cyclase 99.0 6.2E-09 1.4E-13 103.5 12.6 56 237-295 114-169 (447)
153 PRK07494 2-octaprenyl-6-methox 99.0 4.4E-09 9.5E-14 104.5 11.6 64 237-302 111-174 (388)
154 PRK08401 L-aspartate oxidase; 99.0 9.7E-09 2.1E-13 103.8 14.0 56 237-295 120-175 (466)
155 PRK08020 ubiF 2-octaprenyl-3-m 99.0 5.8E-09 1.3E-13 103.8 12.3 63 238-302 113-176 (391)
156 PF12831 FAD_oxidored: FAD dep 99.0 8.9E-10 1.9E-14 110.0 6.3 40 19-58 1-40 (428)
157 PRK08849 2-octaprenyl-3-methyl 98.9 6.9E-09 1.5E-13 102.7 12.5 62 238-301 111-173 (384)
158 KOG0405 Pyridine nucleotide-di 98.9 1E-09 2.2E-14 99.5 5.8 258 15-294 18-286 (478)
159 PRK06854 adenylylsulfate reduc 98.9 8.4E-09 1.8E-13 107.3 13.4 58 237-295 132-195 (608)
160 PRK15317 alkyl hydroperoxide r 98.9 1.5E-08 3.3E-13 103.9 15.0 56 238-295 267-322 (517)
161 PF06100 Strep_67kDa_ant: Stre 98.9 1.8E-08 3.9E-13 97.5 14.3 57 17-73 2-63 (500)
162 TIGR03140 AhpF alkyl hydropero 98.9 1.4E-08 2.9E-13 104.2 14.4 56 238-295 268-323 (515)
163 PRK08626 fumarate reductase fl 98.9 1.6E-08 3.5E-13 105.8 14.8 58 237-295 158-220 (657)
164 PRK09126 hypothetical protein; 98.9 9.9E-09 2.1E-13 102.2 12.8 62 238-301 111-173 (392)
165 PRK12834 putative FAD-binding 98.9 1.7E-08 3.8E-13 104.2 15.0 42 16-57 3-46 (549)
166 PRK08244 hypothetical protein; 98.9 1.1E-08 2.3E-13 104.9 13.3 63 238-302 101-166 (493)
167 PRK07608 ubiquinone biosynthes 98.9 6.1E-09 1.3E-13 103.6 11.1 63 237-302 111-174 (388)
168 COG2072 TrkA Predicted flavopr 98.9 1.7E-08 3.7E-13 100.7 14.1 47 13-59 4-51 (443)
169 PRK07803 sdhA succinate dehydr 98.9 2.5E-08 5.3E-13 104.2 15.6 58 237-295 138-213 (626)
170 PRK06185 hypothetical protein; 98.9 6.6E-09 1.4E-13 104.0 11.0 64 238-302 109-176 (407)
171 PTZ00153 lipoamide dehydrogena 98.9 1.7E-09 3.6E-14 112.1 6.7 52 16-67 115-167 (659)
172 PRK05732 2-octaprenyl-6-methox 98.9 9.2E-09 2E-13 102.6 11.9 62 238-301 113-175 (395)
173 PRK07395 L-aspartate oxidase; 98.9 1.7E-08 3.7E-13 103.6 13.8 59 237-295 134-197 (553)
174 PRK08850 2-octaprenyl-6-methox 98.9 1.1E-08 2.3E-13 102.2 12.0 63 238-302 112-175 (405)
175 PRK08275 putative oxidoreducta 98.9 2E-08 4.3E-13 103.8 13.9 59 237-295 137-200 (554)
176 PRK06753 hypothetical protein; 98.9 1.5E-08 3.2E-13 100.2 12.4 61 238-302 99-159 (373)
177 TIGR00551 nadB L-aspartate oxi 98.9 2.1E-08 4.7E-13 102.1 13.9 58 237-295 128-189 (488)
178 TIGR01790 carotene-cycl lycope 98.9 1.1E-08 2.4E-13 101.7 11.4 57 237-295 85-141 (388)
179 PRK06126 hypothetical protein; 98.9 1.7E-08 3.7E-13 104.7 13.2 63 238-302 127-195 (545)
180 PRK06183 mhpA 3-(3-hydroxyphen 98.9 2.9E-08 6.4E-13 102.6 14.8 63 238-302 114-181 (538)
181 PRK07236 hypothetical protein; 98.9 3.7E-08 8.1E-13 97.6 15.0 60 238-301 101-160 (386)
182 TIGR03219 salicylate_mono sali 98.9 1.5E-08 3.2E-13 101.6 12.0 61 237-301 105-165 (414)
183 PTZ00306 NADH-dependent fumara 98.9 4.3E-08 9.3E-13 109.3 16.7 43 15-57 407-449 (1167)
184 TIGR03378 glycerol3P_GlpB glyc 98.9 9.3E-08 2E-12 92.7 16.8 63 237-301 263-327 (419)
185 PRK05329 anaerobic glycerol-3- 98.9 1.8E-07 3.9E-12 92.1 18.9 57 238-295 260-318 (422)
186 PLN02815 L-aspartate oxidase 98.9 4.2E-08 9.2E-13 101.2 15.2 59 237-295 155-222 (594)
187 PRK06912 acoL dihydrolipoamide 98.9 1.3E-09 2.9E-14 110.1 4.0 46 18-64 1-46 (458)
188 PRK06263 sdhA succinate dehydr 98.8 4.6E-08 1E-12 101.0 14.7 59 237-295 134-197 (543)
189 KOG2415 Electron transfer flav 98.8 6.8E-09 1.5E-13 96.5 7.5 59 237-295 183-256 (621)
190 PF01494 FAD_binding_3: FAD bi 98.8 6.4E-09 1.4E-13 102.2 8.0 65 237-302 111-179 (356)
191 PRK08641 sdhA succinate dehydr 98.8 4.8E-08 1E-12 101.4 14.6 59 237-295 133-200 (589)
192 PRK06475 salicylate hydroxylas 98.8 4.8E-08 1.1E-12 97.3 14.0 64 237-302 107-174 (400)
193 PRK05868 hypothetical protein; 98.8 3.5E-08 7.5E-13 97.0 12.5 61 238-301 106-166 (372)
194 PRK06069 sdhA succinate dehydr 98.8 7.4E-08 1.6E-12 100.1 15.6 58 237-295 137-200 (577)
195 PRK08132 FAD-dependent oxidore 98.8 5.4E-08 1.2E-12 100.9 14.3 64 238-302 126-192 (547)
196 PLN00093 geranylgeranyl diphos 98.8 5E-08 1.1E-12 97.6 13.5 38 13-50 35-72 (450)
197 TIGR01811 sdhA_Bsu succinate d 98.8 2.7E-08 5.8E-13 103.3 11.8 58 238-295 130-196 (603)
198 COG0492 TrxB Thioredoxin reduc 98.8 4.4E-08 9.4E-13 91.9 11.9 54 238-295 62-115 (305)
199 TIGR02360 pbenz_hydroxyl 4-hyd 98.8 4.5E-08 9.8E-13 96.9 12.7 66 237-303 103-171 (390)
200 COG0562 Glf UDP-galactopyranos 98.8 7.3E-09 1.6E-13 93.4 6.1 68 17-84 1-70 (374)
201 PRK09231 fumarate reductase fl 98.8 5.6E-08 1.2E-12 100.7 13.4 58 237-295 133-196 (582)
202 PRK07512 L-aspartate oxidase; 98.8 8.2E-08 1.8E-12 98.1 14.3 58 237-295 136-197 (513)
203 TIGR03143 AhpF_homolog putativ 98.8 6.3E-08 1.4E-12 100.0 13.5 41 16-57 3-43 (555)
204 PRK06617 2-octaprenyl-6-methox 98.8 3.1E-08 6.7E-13 97.7 10.8 63 237-302 104-167 (374)
205 PRK08243 4-hydroxybenzoate 3-m 98.8 4.3E-08 9.4E-13 97.4 11.9 64 238-302 104-170 (392)
206 PRK08071 L-aspartate oxidase; 98.8 8.2E-08 1.8E-12 98.1 13.8 57 237-295 130-190 (510)
207 PRK08205 sdhA succinate dehydr 98.8 1.7E-07 3.8E-12 97.3 16.4 59 237-295 140-206 (583)
208 PRK07846 mycothione reductase; 98.8 7.1E-09 1.5E-13 104.3 5.9 48 17-67 1-48 (451)
209 TIGR01176 fum_red_Fp fumarate 98.8 7.4E-08 1.6E-12 99.6 13.3 58 237-295 132-195 (580)
210 PF00732 GMC_oxred_N: GMC oxid 98.8 1.7E-08 3.8E-13 96.2 8.1 69 237-306 192-268 (296)
211 PF00743 FMO-like: Flavin-bind 98.8 4.9E-08 1.1E-12 99.2 11.4 41 18-58 2-42 (531)
212 COG0029 NadB Aspartate oxidase 98.8 1.3E-06 2.7E-11 84.3 20.0 57 238-295 134-196 (518)
213 TIGR02023 BchP-ChlP geranylger 98.7 1.5E-07 3.3E-12 93.3 14.0 63 237-302 92-162 (388)
214 PRK09897 hypothetical protein; 98.7 2.4E-07 5.2E-12 93.8 15.5 55 237-293 107-164 (534)
215 PF06039 Mqo: Malate:quinone o 98.7 4.6E-07 9.9E-12 87.0 16.3 64 237-303 181-250 (488)
216 PRK07538 hypothetical protein; 98.7 1.8E-07 3.9E-12 93.6 14.5 63 238-302 103-172 (413)
217 TIGR02352 thiamin_ThiO glycine 98.7 8.2E-06 1.8E-10 79.5 24.7 62 237-302 137-198 (337)
218 TIGR01989 COQ6 Ubiquinone bios 98.7 1.1E-07 2.4E-12 95.7 11.5 66 237-302 117-190 (437)
219 PF13454 NAD_binding_9: FAD-NA 98.7 1.8E-07 3.9E-12 79.4 10.6 52 239-293 103-155 (156)
220 TIGR02061 aprA adenosine phosp 98.7 2E-07 4.3E-12 96.3 12.9 58 238-295 127-191 (614)
221 PF05834 Lycopene_cycl: Lycope 98.7 6.9E-08 1.5E-12 94.9 8.9 56 237-295 87-142 (374)
222 PLN02985 squalene monooxygenas 98.7 2.7E-07 5.9E-12 94.0 13.4 63 238-302 148-215 (514)
223 PF00070 Pyr_redox: Pyridine n 98.7 3.7E-07 8E-12 67.7 10.4 34 19-52 1-34 (80)
224 PRK11445 putative oxidoreducta 98.6 3.8E-07 8.2E-12 89.0 13.3 62 238-302 100-164 (351)
225 TIGR03452 mycothione_red mycot 98.6 2.9E-08 6.4E-13 100.0 5.7 48 17-67 2-49 (452)
226 PRK06996 hypothetical protein; 98.6 2.3E-07 5E-12 92.3 12.0 55 237-293 115-172 (398)
227 PRK09077 L-aspartate oxidase; 98.6 2.9E-07 6.2E-12 94.8 12.9 59 237-295 138-207 (536)
228 PRK10262 thioredoxin reductase 98.6 4.9E-07 1.1E-11 87.2 12.8 42 15-57 4-45 (321)
229 TIGR02462 pyranose_ox pyranose 98.6 9.9E-07 2.2E-11 89.2 14.7 38 18-55 1-38 (544)
230 KOG2852 Possible oxidoreductas 98.6 1.4E-07 3.1E-12 83.7 7.4 63 237-303 147-214 (380)
231 COG1252 Ndh NADH dehydrogenase 98.5 4.5E-07 9.7E-12 87.4 9.4 56 234-295 206-262 (405)
232 COG3075 GlpB Anaerobic glycero 98.5 2.4E-06 5.1E-11 77.6 12.9 57 238-295 259-317 (421)
233 PRK13800 putative oxidoreducta 98.5 1.2E-06 2.6E-11 95.7 13.2 36 16-51 12-47 (897)
234 TIGR01810 betA choline dehydro 98.5 1.2E-06 2.6E-11 90.5 12.5 60 240-301 196-260 (532)
235 PRK08294 phenol 2-monooxygenas 98.5 2E-06 4.4E-11 90.0 14.1 65 238-302 142-217 (634)
236 KOG0042 Glycerol-3-phosphate d 98.5 2.8E-07 6.1E-12 88.9 6.4 58 238-295 225-287 (680)
237 COG1148 HdrA Heterodisulfide r 98.4 1.7E-07 3.6E-12 89.3 3.9 44 16-59 123-166 (622)
238 PF04820 Trp_halogenase: Trypt 98.4 1.3E-06 2.8E-11 87.7 10.5 58 237-295 154-211 (454)
239 PLN02852 ferredoxin-NADP+ redu 98.4 3.6E-07 7.8E-12 91.4 6.4 44 15-58 24-69 (491)
240 COG1053 SdhA Succinate dehydro 98.4 3.5E-06 7.6E-11 85.9 13.5 44 15-58 4-47 (562)
241 KOG1439 RAB proteins geranylge 98.4 2.5E-05 5.5E-10 73.1 17.5 62 228-290 223-284 (440)
242 TIGR03197 MnmC_Cterm tRNA U-34 98.4 2.5E-06 5.3E-11 84.5 11.7 60 237-301 135-194 (381)
243 TIGR03315 Se_ygfK putative sel 98.4 4.1E-07 8.9E-12 97.8 6.1 43 16-58 536-578 (1012)
244 COG3573 Predicted oxidoreducta 98.4 2.7E-06 5.8E-11 77.3 10.0 43 15-57 3-47 (552)
245 KOG1399 Flavin-containing mono 98.4 4E-07 8.6E-12 89.6 5.2 44 16-59 5-48 (448)
246 PRK12779 putative bifunctional 98.4 4.5E-07 9.8E-12 98.3 5.7 43 16-58 305-347 (944)
247 PRK12831 putative oxidoreducta 98.3 5.8E-07 1.2E-11 90.7 6.0 43 15-57 138-180 (464)
248 KOG2665 Predicted FAD-dependen 98.3 3.5E-06 7.6E-11 76.0 9.0 55 4-58 35-91 (453)
249 TIGR02028 ChlP geranylgeranyl 98.3 7.4E-07 1.6E-11 88.4 5.1 39 18-56 1-39 (398)
250 COG0445 GidA Flavin-dependent 98.3 1.5E-06 3.2E-11 84.7 6.7 45 16-60 3-47 (621)
251 TIGR01316 gltA glutamate synth 98.3 1.3E-06 2.8E-11 88.1 6.1 44 14-57 130-173 (449)
252 PRK09853 putative selenate red 98.3 1.2E-06 2.5E-11 94.0 6.0 43 16-58 538-580 (1019)
253 PRK09564 coenzyme A disulfide 98.2 6.4E-06 1.4E-10 83.4 10.8 35 18-52 1-37 (444)
254 COG4716 Myosin-crossreactive a 98.2 1.3E-06 2.7E-11 80.6 5.0 58 16-73 21-83 (587)
255 PRK09754 phenylpropionate diox 98.2 5.6E-06 1.2E-10 82.3 10.0 44 248-295 69-112 (396)
256 PTZ00188 adrenodoxin reductase 98.2 1.9E-06 4.2E-11 84.9 6.4 43 16-58 38-81 (506)
257 PRK09754 phenylpropionate diox 98.2 1.4E-05 3.1E-10 79.4 12.4 50 243-295 192-241 (396)
258 PRK12775 putative trifunctiona 98.2 2E-06 4.2E-11 94.4 6.0 43 16-58 429-471 (1006)
259 KOG2614 Kynurenine 3-monooxyge 98.2 2.1E-06 4.5E-11 81.0 4.9 39 17-55 2-40 (420)
260 PTZ00318 NADH dehydrogenase-li 98.2 2.6E-06 5.6E-11 85.4 6.0 53 236-294 227-279 (424)
261 PRK12769 putative oxidoreducta 98.2 2.4E-06 5.3E-11 90.3 6.0 43 16-58 326-368 (654)
262 PRK12810 gltD glutamate syntha 98.1 2.9E-06 6.3E-11 86.1 6.0 43 15-57 141-183 (471)
263 PTZ00367 squalene epoxidase; P 98.1 2.4E-06 5.2E-11 87.7 5.2 35 16-50 32-66 (567)
264 PRK04965 NADH:flavorubredoxin 98.1 2.7E-05 6E-10 76.9 12.5 51 243-295 189-239 (377)
265 KOG2311 NAD/FAD-utilizing prot 98.1 6.9E-06 1.5E-10 78.3 7.5 41 15-55 26-67 (679)
266 PRK12778 putative bifunctional 98.1 3.8E-06 8.3E-11 90.3 6.1 42 16-57 430-471 (752)
267 PRK05335 tRNA (uracil-5-)-meth 98.1 3.8E-06 8.3E-11 81.5 5.2 37 17-53 2-38 (436)
268 PRK11749 dihydropyrimidine deh 98.1 4.7E-06 1E-10 84.5 6.1 43 15-57 138-180 (457)
269 PLN02927 antheraxanthin epoxid 98.1 3.2E-06 7E-11 87.3 4.9 59 238-301 195-254 (668)
270 PRK12809 putative oxidoreducta 98.1 4.7E-06 1E-10 87.8 6.2 43 16-58 309-351 (639)
271 PRK12814 putative NADPH-depend 98.1 4.8E-06 1E-10 87.8 6.1 42 16-57 192-233 (652)
272 COG0493 GltD NADPH-dependent g 98.1 4.1E-06 8.8E-11 83.1 5.2 42 17-58 123-164 (457)
273 PRK14989 nitrite reductase sub 98.1 2.1E-05 4.5E-10 84.8 10.9 45 247-295 69-113 (847)
274 TIGR01789 lycopene_cycl lycope 98.1 4.1E-06 8.9E-11 82.0 4.9 37 19-55 1-39 (370)
275 TIGR01318 gltD_gamma_fam gluta 98.1 5.8E-06 1.3E-10 83.6 6.0 43 16-58 140-182 (467)
276 KOG0399 Glutamate synthase [Am 98.0 4.1E-06 8.8E-11 87.3 4.6 44 15-58 1783-1826(2142)
277 PRK14989 nitrite reductase sub 98.0 4.6E-05 1E-09 82.2 12.8 54 242-295 192-245 (847)
278 PRK06567 putative bifunctional 98.0 6.3E-06 1.4E-10 87.4 6.0 38 15-52 381-418 (1028)
279 TIGR01372 soxA sarcosine oxida 98.0 6.6E-06 1.4E-10 90.8 6.3 43 16-58 162-204 (985)
280 TIGR00137 gid_trmFO tRNA:m(5)U 98.0 5.6E-06 1.2E-10 80.9 4.9 37 18-54 1-37 (433)
281 TIGR03377 glycerol3P_GlpA glyc 98.0 7.3E-05 1.6E-09 77.1 13.4 62 237-301 128-194 (516)
282 TIGR02374 nitri_red_nirB nitri 98.0 2.2E-05 4.9E-10 84.5 9.7 45 247-295 64-108 (785)
283 TIGR03169 Nterm_to_SelD pyridi 98.0 2.4E-05 5.1E-10 77.1 9.0 46 245-295 62-107 (364)
284 PRK12770 putative glutamate sy 98.0 1E-05 2.2E-10 79.1 6.1 51 6-57 8-58 (352)
285 TIGR02374 nitri_red_nirB nitri 98.0 7.4E-05 1.6E-09 80.6 12.5 50 243-294 188-237 (785)
286 TIGR01317 GOGAT_sm_gam glutama 97.9 1.2E-05 2.5E-10 81.9 5.9 42 16-57 142-183 (485)
287 KOG1298 Squalene monooxygenase 97.9 9E-06 1.9E-10 75.5 4.5 35 15-49 43-77 (509)
288 COG0446 HcaD Uncharacterized N 97.9 7.2E-05 1.6E-09 75.1 11.5 39 17-55 136-174 (415)
289 PF07992 Pyr_redox_2: Pyridine 97.9 1.4E-05 3E-10 71.4 4.7 33 19-51 1-33 (201)
290 COG4529 Uncharacterized protei 97.9 0.00019 4.2E-09 69.7 12.3 41 17-57 1-44 (474)
291 PRK13512 coenzyme A disulfide 97.9 0.00012 2.5E-09 73.9 11.1 34 18-51 149-182 (438)
292 COG5044 MRS6 RAB proteins gera 97.8 0.00045 9.7E-09 64.3 13.3 63 225-290 217-279 (434)
293 PRK04965 NADH:flavorubredoxin 97.8 0.00017 3.8E-09 71.2 11.7 44 247-295 68-111 (377)
294 TIGR03385 CoA_CoA_reduc CoA-di 97.8 0.0002 4.4E-09 72.0 12.2 49 243-295 185-233 (427)
295 PRK12771 putative glutamate sy 97.8 3E-05 6.5E-10 80.7 6.3 42 16-57 136-177 (564)
296 PRK02106 choline dehydrogenase 97.8 2.7E-05 5.9E-10 81.0 5.2 51 249-301 213-267 (560)
297 PRK08255 salicylyl-CoA 5-hydro 97.7 2.8E-05 6.1E-10 83.6 4.8 34 18-51 1-36 (765)
298 PRK09564 coenzyme A disulfide 97.7 0.00034 7.4E-09 70.9 12.5 51 242-295 196-246 (444)
299 PRK13984 putative oxidoreducta 97.7 4.4E-05 9.5E-10 80.3 6.0 43 15-57 281-323 (604)
300 KOG0404 Thioredoxin reductase 97.7 0.00035 7.5E-09 60.2 9.8 57 238-300 71-127 (322)
301 KOG1800 Ferredoxin/adrenodoxin 97.6 0.00011 2.3E-09 68.5 5.2 45 14-58 17-63 (468)
302 KOG2960 Protein involved in th 97.5 2.2E-05 4.7E-10 66.7 0.3 41 17-57 76-118 (328)
303 KOG1336 Monodehydroascorbate/f 97.5 0.00079 1.7E-08 65.1 10.5 58 238-295 256-313 (478)
304 TIGR03862 flavo_PP4765 unchara 97.5 0.0013 2.8E-08 63.8 11.8 61 231-295 79-141 (376)
305 PF13434 K_oxygenase: L-lysine 97.5 0.00054 1.2E-08 66.0 8.9 35 17-51 2-37 (341)
306 KOG4716 Thioredoxin reductase 97.5 0.00018 3.9E-09 65.9 5.1 68 232-300 233-305 (503)
307 COG2303 BetA Choline dehydroge 97.5 0.00012 2.6E-09 75.3 4.6 63 237-301 202-271 (542)
308 PRK10262 thioredoxin reductase 97.4 0.0011 2.5E-08 63.8 10.3 34 17-50 146-179 (321)
309 PRK13512 coenzyme A disulfide 97.4 0.00021 4.6E-09 72.0 4.9 53 237-295 189-241 (438)
310 COG3634 AhpF Alkyl hydroperoxi 97.3 0.00069 1.5E-08 62.4 7.2 58 238-295 267-325 (520)
311 PLN02785 Protein HOTHEAD 97.3 0.00025 5.4E-09 73.5 5.0 36 15-51 53-88 (587)
312 TIGR01316 gltA glutamate synth 97.3 0.002 4.4E-08 65.1 11.0 33 18-50 273-305 (449)
313 TIGR03140 AhpF alkyl hydropero 97.2 0.0023 5.1E-08 65.9 10.2 34 17-50 352-385 (515)
314 KOG4405 GDP dissociation inhib 97.2 0.023 4.9E-07 53.9 15.3 119 168-290 217-340 (547)
315 COG1206 Gid NAD(FAD)-utilizing 97.1 0.00056 1.2E-08 62.6 4.0 37 17-53 3-39 (439)
316 PRK12831 putative oxidoreducta 97.0 0.005 1.1E-07 62.4 10.9 34 17-50 281-314 (464)
317 PF01210 NAD_Gly3P_dh_N: NAD-d 96.8 0.0015 3.2E-08 55.4 4.1 32 19-50 1-32 (157)
318 PRK11749 dihydropyrimidine deh 96.7 0.01 2.2E-07 60.3 10.5 33 17-49 273-306 (457)
319 COG1251 NirB NAD(P)H-nitrite r 96.6 0.0058 1.3E-07 62.5 7.3 51 242-294 192-242 (793)
320 KOG1238 Glucose dehydrogenase/ 96.5 0.0026 5.7E-08 64.2 4.2 38 15-52 55-93 (623)
321 PF02737 3HCDH_N: 3-hydroxyacy 96.4 0.0045 9.8E-08 53.7 4.4 32 19-50 1-32 (180)
322 PF03721 UDPG_MGDP_dh_N: UDP-g 96.4 0.0041 8.8E-08 54.2 4.0 34 18-51 1-34 (185)
323 PRK12810 gltD glutamate syntha 96.3 0.043 9.4E-07 55.9 11.5 47 246-293 338-398 (471)
324 COG3486 IucD Lysine/ornithine 96.2 0.054 1.2E-06 51.8 10.6 37 15-51 3-40 (436)
325 KOG3855 Monooxygenase involved 96.1 0.0065 1.4E-07 57.7 4.4 36 16-51 35-74 (481)
326 KOG3923 D-aspartate oxidase [A 96.1 0.0066 1.4E-07 55.1 4.0 51 238-304 152-202 (342)
327 TIGR01318 gltD_gamma_fam gluta 96.1 0.049 1.1E-06 55.4 10.8 34 17-50 282-316 (467)
328 PRK02705 murD UDP-N-acetylmura 96.0 0.0075 1.6E-07 61.4 4.5 34 19-52 2-35 (459)
329 PF07156 Prenylcys_lyase: Pren 96.0 0.052 1.1E-06 52.7 9.8 66 224-294 116-186 (368)
330 PRK01438 murD UDP-N-acetylmura 95.9 0.0093 2E-07 61.1 4.8 35 17-51 16-50 (480)
331 PRK06249 2-dehydropantoate 2-r 95.9 0.011 2.3E-07 56.7 4.9 37 14-50 2-38 (313)
332 PRK06129 3-hydroxyacyl-CoA deh 95.9 0.0093 2E-07 57.0 4.4 34 18-51 3-36 (308)
333 PRK12769 putative oxidoreducta 95.8 0.072 1.6E-06 56.8 11.2 33 17-49 468-501 (654)
334 PRK07819 3-hydroxybutyryl-CoA 95.8 0.011 2.4E-07 55.7 4.4 34 18-51 6-39 (286)
335 PF13434 K_oxygenase: L-lysine 95.8 0.069 1.5E-06 51.6 9.9 35 16-50 189-225 (341)
336 PRK07251 pyridine nucleotide-d 95.8 0.012 2.6E-07 59.5 4.9 35 18-52 158-192 (438)
337 PRK05976 dihydrolipoamide dehy 95.6 0.013 2.9E-07 59.8 4.6 35 18-52 181-215 (472)
338 PRK08293 3-hydroxybutyryl-CoA 95.6 0.015 3.2E-07 55.0 4.5 33 18-50 4-36 (287)
339 TIGR01372 soxA sarcosine oxida 95.6 0.095 2.1E-06 58.5 11.3 47 247-295 361-411 (985)
340 PRK07066 3-hydroxybutyryl-CoA 95.6 0.018 3.8E-07 54.8 4.9 34 17-50 7-40 (321)
341 COG0569 TrkA K+ transport syst 95.6 0.015 3.3E-07 52.4 4.2 34 18-51 1-34 (225)
342 TIGR01350 lipoamide_DH dihydro 95.4 0.018 4E-07 58.6 4.8 36 17-52 170-205 (461)
343 TIGR02053 MerA mercuric reduct 95.3 0.02 4.3E-07 58.4 4.7 35 18-52 167-201 (463)
344 PRK09260 3-hydroxybutyryl-CoA 95.3 0.017 3.8E-07 54.6 4.0 34 18-51 2-35 (288)
345 PRK11064 wecC UDP-N-acetyl-D-m 95.3 0.018 4E-07 57.3 4.3 35 17-51 3-37 (415)
346 PRK07530 3-hydroxybutyryl-CoA 95.3 0.02 4.4E-07 54.3 4.4 34 17-50 4-37 (292)
347 PF02558 ApbA: Ketopantoate re 95.3 0.024 5.3E-07 47.7 4.5 31 20-50 1-31 (151)
348 TIGR01421 gluta_reduc_1 glutat 95.2 0.023 5E-07 57.5 4.8 51 244-295 214-265 (450)
349 PRK06467 dihydrolipoamide dehy 95.2 0.024 5.2E-07 57.8 4.8 35 18-52 175-209 (471)
350 PF01262 AlaDh_PNT_C: Alanine 95.2 0.029 6.2E-07 48.2 4.5 35 16-50 19-53 (168)
351 PRK14106 murD UDP-N-acetylmura 95.2 0.027 5.8E-07 57.2 5.1 34 17-50 5-38 (450)
352 PRK06912 acoL dihydrolipoamide 95.2 0.025 5.5E-07 57.5 4.8 35 18-52 171-205 (458)
353 PRK07846 mycothione reductase; 95.2 0.024 5.3E-07 57.3 4.7 36 17-52 166-201 (451)
354 TIGR01816 sdhA_forward succina 95.1 0.067 1.5E-06 55.8 7.9 58 237-295 119-181 (565)
355 COG1249 Lpd Pyruvate/2-oxoglut 95.1 0.028 6.1E-07 56.1 4.8 36 17-52 173-208 (454)
356 PRK06370 mercuric reductase; V 95.1 0.028 6E-07 57.3 4.9 36 18-53 172-207 (463)
357 PRK06416 dihydrolipoamide dehy 95.1 0.027 5.8E-07 57.4 4.7 35 18-52 173-207 (462)
358 PRK06115 dihydrolipoamide dehy 95.1 0.028 6.1E-07 57.2 4.8 36 17-52 174-209 (466)
359 PRK07818 dihydrolipoamide dehy 95.0 0.029 6.2E-07 57.2 4.7 34 18-51 173-206 (466)
360 KOG2755 Oxidoreductase [Genera 95.0 0.015 3.3E-07 51.7 2.3 33 19-51 1-35 (334)
361 PRK05675 sdhA succinate dehydr 95.0 0.083 1.8E-06 55.2 8.0 59 237-295 126-189 (570)
362 KOG2304 3-hydroxyacyl-CoA dehy 95.0 0.033 7.2E-07 48.4 4.1 41 9-50 4-44 (298)
363 PRK05808 3-hydroxybutyryl-CoA 94.9 0.032 6.9E-07 52.6 4.4 33 18-50 4-36 (282)
364 PRK06292 dihydrolipoamide dehy 94.9 0.035 7.6E-07 56.6 4.9 36 17-52 169-204 (460)
365 PRK05249 soluble pyridine nucl 94.9 0.033 7.2E-07 56.8 4.7 37 17-53 175-211 (461)
366 COG1004 Ugd Predicted UDP-gluc 94.8 0.033 7.1E-07 53.1 4.1 33 18-50 1-33 (414)
367 PRK06522 2-dehydropantoate 2-r 94.8 0.035 7.6E-07 53.1 4.4 33 18-50 1-33 (304)
368 PRK06035 3-hydroxyacyl-CoA deh 94.7 0.037 8E-07 52.4 4.4 33 18-50 4-36 (291)
369 PRK06327 dihydrolipoamide dehy 94.7 0.039 8.5E-07 56.4 4.7 35 18-52 184-218 (475)
370 PRK12921 2-dehydropantoate 2-r 94.7 0.039 8.4E-07 52.8 4.4 31 18-48 1-31 (305)
371 PRK14618 NAD(P)H-dependent gly 94.6 0.046 1E-06 52.8 4.9 34 17-50 4-37 (328)
372 TIGR03452 mycothione_red mycot 94.6 0.042 9.2E-07 55.6 4.7 36 17-52 169-204 (452)
373 PRK08229 2-dehydropantoate 2-r 94.5 0.041 8.9E-07 53.5 4.3 33 18-50 3-35 (341)
374 PRK14619 NAD(P)H-dependent gly 94.5 0.052 1.1E-06 51.9 4.9 34 17-50 4-37 (308)
375 cd05292 LDH_2 A subgroup of L- 94.5 0.047 1E-06 52.0 4.5 34 18-51 1-36 (308)
376 PRK04148 hypothetical protein; 94.5 0.04 8.6E-07 44.5 3.3 34 17-51 17-50 (134)
377 PRK05708 2-dehydropantoate 2-r 94.5 0.052 1.1E-06 51.7 4.7 34 17-50 2-35 (305)
378 TIGR01763 MalateDH_bact malate 94.4 0.055 1.2E-06 51.4 4.8 34 18-51 2-36 (305)
379 PF03446 NAD_binding_2: NAD bi 94.4 0.054 1.2E-06 46.3 4.3 34 17-50 1-34 (163)
380 TIGR03026 NDP-sugDHase nucleot 94.4 0.041 9E-07 54.9 4.1 33 19-51 2-34 (411)
381 PRK07845 flavoprotein disulfid 94.4 0.055 1.2E-06 55.1 4.9 36 18-53 178-213 (466)
382 PF01488 Shikimate_DH: Shikima 94.2 0.089 1.9E-06 43.2 5.0 35 16-50 11-46 (135)
383 PTZ00153 lipoamide dehydrogena 94.2 0.056 1.2E-06 56.9 4.7 35 18-52 313-347 (659)
384 cd01080 NAD_bind_m-THF_DH_Cycl 94.2 0.077 1.7E-06 45.2 4.6 34 16-49 43-77 (168)
385 PTZ00058 glutathione reductase 94.1 0.057 1.2E-06 55.9 4.5 35 17-51 237-271 (561)
386 TIGR01424 gluta_reduc_2 glutat 94.1 0.06 1.3E-06 54.5 4.6 49 245-295 215-263 (446)
387 PLN02545 3-hydroxybutyryl-CoA 94.1 0.064 1.4E-06 50.9 4.4 33 18-50 5-37 (295)
388 PRK00094 gpsA NAD(P)H-dependen 94.0 0.068 1.5E-06 51.6 4.6 33 18-50 2-34 (325)
389 PRK06130 3-hydroxybutyryl-CoA 93.9 0.072 1.6E-06 51.1 4.6 33 18-50 5-37 (311)
390 PRK08268 3-hydroxy-acyl-CoA de 93.9 0.071 1.5E-06 54.5 4.7 35 17-51 7-41 (507)
391 PLN02507 glutathione reductase 93.9 0.072 1.6E-06 54.7 4.6 35 18-52 204-238 (499)
392 PRK08010 pyridine nucleotide-d 93.9 0.076 1.7E-06 53.7 4.8 49 244-295 206-254 (441)
393 TIGR02279 PaaC-3OHAcCoADH 3-hy 93.8 0.061 1.3E-06 54.8 4.0 34 18-51 6-39 (503)
394 TIGR01470 cysG_Nterm siroheme 93.8 0.11 2.4E-06 46.1 5.1 34 17-50 9-42 (205)
395 PRK06116 glutathione reductase 93.8 0.079 1.7E-06 53.8 4.7 36 17-52 167-202 (450)
396 TIGR02354 thiF_fam2 thiamine b 93.7 0.11 2.4E-06 45.9 4.8 34 16-49 20-54 (200)
397 COG1748 LYS9 Saccharopine dehy 93.7 0.092 2E-06 50.9 4.6 34 17-50 1-35 (389)
398 TIGR03143 AhpF_homolog putativ 93.7 0.071 1.5E-06 55.6 4.2 36 17-52 143-178 (555)
399 PRK14620 NAD(P)H-dependent gly 93.6 0.084 1.8E-06 51.0 4.4 32 19-50 2-33 (326)
400 PRK06718 precorrin-2 dehydroge 93.6 0.12 2.5E-06 45.8 4.9 34 16-49 9-42 (202)
401 COG0771 MurD UDP-N-acetylmuram 93.6 0.09 1.9E-06 52.0 4.4 36 17-52 7-42 (448)
402 TIGR00518 alaDH alanine dehydr 93.6 0.098 2.1E-06 51.2 4.7 34 17-50 167-200 (370)
403 PRK07417 arogenate dehydrogena 93.5 0.086 1.9E-06 49.6 4.1 32 19-50 2-33 (279)
404 PRK07531 bifunctional 3-hydrox 93.4 0.083 1.8E-06 54.0 4.2 33 18-50 5-37 (495)
405 PRK06719 precorrin-2 dehydroge 93.4 0.14 3E-06 43.3 4.8 33 15-47 11-43 (157)
406 PRK15317 alkyl hydroperoxide r 93.4 0.088 1.9E-06 54.4 4.3 35 17-51 351-385 (517)
407 PLN02546 glutathione reductase 93.3 0.096 2.1E-06 54.3 4.5 36 17-52 252-287 (558)
408 KOG1346 Programmed cell death 93.3 0.1 2.2E-06 49.8 4.2 63 238-303 394-456 (659)
409 PRK15057 UDP-glucose 6-dehydro 93.3 0.099 2.1E-06 51.5 4.3 32 19-51 2-33 (388)
410 PF13241 NAD_binding_7: Putati 93.2 0.075 1.6E-06 41.3 2.7 35 16-50 6-40 (103)
411 PRK04308 murD UDP-N-acetylmura 93.2 0.13 2.9E-06 52.0 5.3 36 17-52 5-40 (445)
412 PLN02353 probable UDP-glucose 93.1 0.1 2.3E-06 52.6 4.2 34 18-51 2-37 (473)
413 TIGR01915 npdG NADPH-dependent 93.1 0.12 2.6E-06 46.6 4.3 33 18-50 1-34 (219)
414 PRK12770 putative glutamate sy 93.1 0.11 2.4E-06 50.8 4.3 33 18-50 173-206 (352)
415 COG0686 Ald Alanine dehydrogen 93.1 0.084 1.8E-06 48.5 3.1 34 17-50 168-201 (371)
416 PRK01710 murD UDP-N-acetylmura 93.1 0.11 2.4E-06 52.7 4.5 33 18-50 15-47 (458)
417 TIGR01438 TGR thioredoxin and 93.0 0.13 2.8E-06 52.6 4.8 32 18-49 181-212 (484)
418 PRK14694 putative mercuric red 93.0 0.13 2.8E-06 52.5 4.9 32 18-49 179-210 (468)
419 TIGR01423 trypano_reduc trypan 92.9 0.12 2.7E-06 52.6 4.5 37 17-53 187-226 (486)
420 TIGR01292 TRX_reduct thioredox 92.8 0.13 2.7E-06 49.0 4.2 35 17-51 141-175 (300)
421 PTZ00052 thioredoxin reductase 92.8 0.14 3E-06 52.6 4.7 32 18-49 183-214 (499)
422 PRK13748 putative mercuric red 92.8 0.13 2.8E-06 53.9 4.6 32 18-49 271-302 (561)
423 cd01075 NAD_bind_Leu_Phe_Val_D 92.7 0.18 4E-06 44.5 4.8 33 17-49 28-60 (200)
424 KOG3851 Sulfide:quinone oxidor 92.7 0.12 2.6E-06 47.7 3.6 37 15-51 37-75 (446)
425 PRK14727 putative mercuric red 92.7 0.15 3.3E-06 52.1 4.9 32 18-49 189-220 (479)
426 PRK09424 pntA NAD(P) transhydr 92.7 0.12 2.6E-06 52.4 3.9 36 16-51 164-199 (509)
427 TIGR01505 tartro_sem_red 2-hyd 92.7 0.13 2.7E-06 48.8 3.9 32 19-50 1-32 (291)
428 PRK06223 malate dehydrogenase; 92.6 0.16 3.5E-06 48.5 4.7 34 18-51 3-37 (307)
429 COG2084 MmsB 3-hydroxyisobutyr 92.5 0.16 3.5E-06 47.1 4.3 34 18-51 1-34 (286)
430 PRK11730 fadB multifunctional 92.5 0.12 2.6E-06 55.4 3.9 34 18-51 314-347 (715)
431 PRK02472 murD UDP-N-acetylmura 92.5 0.17 3.7E-06 51.4 4.9 34 17-50 5-38 (447)
432 PRK04690 murD UDP-N-acetylmura 92.4 0.15 3.3E-06 51.9 4.3 35 17-51 8-42 (468)
433 PTZ00082 L-lactate dehydrogena 92.3 0.21 4.5E-06 47.9 4.9 35 17-51 6-41 (321)
434 TIGR02437 FadB fatty oxidation 92.2 0.16 3.4E-06 54.4 4.4 34 17-50 313-346 (714)
435 TIGR03169 Nterm_to_SelD pyridi 92.2 0.34 7.4E-06 47.6 6.6 53 237-295 191-243 (364)
436 COG1250 FadB 3-hydroxyacyl-CoA 92.2 0.19 4E-06 47.2 4.3 33 17-49 3-35 (307)
437 cd05191 NAD_bind_amino_acid_DH 92.2 0.3 6.4E-06 36.4 4.6 32 17-48 23-55 (86)
438 PRK03369 murD UDP-N-acetylmura 92.1 0.16 3.6E-06 51.9 4.3 34 17-50 12-45 (488)
439 PF02254 TrkA_N: TrkA-N domain 92.1 0.25 5.4E-06 39.3 4.4 32 20-51 1-32 (116)
440 cd05291 HicDH_like L-2-hydroxy 92.1 0.19 4.2E-06 47.9 4.4 33 19-51 2-36 (306)
441 PRK15461 NADH-dependent gamma- 92.0 0.19 4.1E-06 47.7 4.3 33 18-50 2-34 (296)
442 cd00401 AdoHcyase S-adenosyl-L 92.0 0.19 4.1E-06 49.5 4.3 35 17-51 202-236 (413)
443 PRK12549 shikimate 5-dehydroge 91.9 0.24 5.2E-06 46.5 4.8 34 17-50 127-161 (284)
444 PRK00683 murD UDP-N-acetylmura 91.9 0.2 4.3E-06 50.2 4.5 34 17-50 3-36 (418)
445 PRK00066 ldh L-lactate dehydro 91.9 0.27 6E-06 46.9 5.2 36 15-50 4-41 (315)
446 cd05311 NAD_bind_2_malic_enz N 91.9 0.24 5.2E-06 44.7 4.6 34 17-50 25-61 (226)
447 TIGR02441 fa_ox_alpha_mit fatt 91.9 0.16 3.6E-06 54.4 4.0 35 17-51 335-369 (737)
448 COG3634 AhpF Alkyl hydroperoxi 91.8 0.14 3E-06 47.8 2.9 34 16-49 353-386 (520)
449 PRK08306 dipicolinate synthase 91.7 0.25 5.4E-06 46.7 4.7 34 17-50 152-185 (296)
450 PTZ00318 NADH dehydrogenase-li 91.6 0.23 5E-06 49.9 4.6 35 18-52 174-222 (424)
451 PF00056 Ldh_1_N: lactate/mala 91.6 0.31 6.7E-06 40.3 4.6 33 18-50 1-36 (141)
452 PTZ00345 glycerol-3-phosphate 91.6 0.28 6.1E-06 47.6 5.0 37 15-51 9-52 (365)
453 PLN02695 GDP-D-mannose-3',5'-e 91.6 0.29 6.4E-06 48.1 5.2 42 9-50 13-55 (370)
454 PTZ00142 6-phosphogluconate de 91.6 0.2 4.4E-06 50.5 4.1 34 18-51 2-35 (470)
455 TIGR00561 pntA NAD(P) transhyd 91.4 0.28 6.1E-06 49.6 4.9 36 16-51 163-198 (511)
456 PF13478 XdhC_C: XdhC Rossmann 91.3 0.27 5.9E-06 40.2 3.9 32 20-51 1-32 (136)
457 COG1893 ApbA Ketopantoate redu 91.3 0.21 4.6E-06 47.4 3.7 34 18-51 1-34 (307)
458 PF00899 ThiF: ThiF family; I 91.2 0.31 6.8E-06 40.0 4.3 34 17-50 2-36 (135)
459 TIGR00872 gnd_rel 6-phosphoglu 91.1 0.27 5.9E-06 46.7 4.3 33 19-51 2-34 (298)
460 COG1252 Ndh NADH dehydrogenase 91.1 0.17 3.7E-06 49.4 2.9 36 17-52 155-203 (405)
461 PRK11559 garR tartronate semia 91.1 0.27 5.9E-06 46.7 4.3 33 18-50 3-35 (296)
462 PRK00421 murC UDP-N-acetylmura 91.0 0.25 5.3E-06 50.3 4.2 35 17-51 7-42 (461)
463 cd01339 LDH-like_MDH L-lactate 91.0 0.25 5.5E-06 47.0 4.0 31 20-50 1-32 (300)
464 PF10727 Rossmann-like: Rossma 91.0 0.19 4.1E-06 40.5 2.7 36 14-49 7-42 (127)
465 TIGR02853 spore_dpaA dipicolin 90.9 0.3 6.5E-06 45.9 4.3 34 17-50 151-184 (287)
466 PRK12778 putative bifunctional 90.9 0.27 5.8E-06 53.4 4.5 33 18-50 571-604 (752)
467 TIGR02440 FadJ fatty oxidation 90.8 0.24 5.1E-06 53.0 4.0 35 17-51 304-339 (699)
468 PF03807 F420_oxidored: NADP o 90.8 0.3 6.6E-06 37.2 3.6 32 19-50 1-36 (96)
469 PRK02006 murD UDP-N-acetylmura 90.8 0.32 6.9E-06 50.1 4.7 34 17-50 7-40 (498)
470 PRK07502 cyclohexadienyl dehyd 90.8 0.32 7E-06 46.4 4.5 33 18-50 7-41 (307)
471 PRK00141 murD UDP-N-acetylmura 90.8 0.33 7.1E-06 49.5 4.8 34 17-50 15-48 (473)
472 PRK11154 fadJ multifunctional 90.7 0.23 5E-06 53.2 3.8 34 17-50 309-343 (708)
473 PRK11199 tyrA bifunctional cho 90.7 0.36 7.9E-06 47.4 4.8 35 16-50 97-132 (374)
474 PRK09599 6-phosphogluconate de 90.6 0.28 6.1E-06 46.7 3.9 32 19-50 2-33 (301)
475 cd01078 NAD_bind_H4MPT_DH NADP 90.5 0.43 9.3E-06 42.0 4.8 33 17-49 28-61 (194)
476 PTZ00117 malate dehydrogenase; 90.5 0.39 8.5E-06 46.0 4.8 35 16-50 4-39 (319)
477 cd05293 LDH_1 A subgroup of L- 90.5 0.42 9.1E-06 45.5 4.9 35 16-50 2-38 (312)
478 cd01487 E1_ThiF_like E1_ThiF_l 90.4 0.45 9.8E-06 41.0 4.6 32 19-50 1-33 (174)
479 PRK03803 murD UDP-N-acetylmura 90.4 0.32 7E-06 49.3 4.3 34 18-51 7-40 (448)
480 PRK07688 thiamine/molybdopteri 90.3 0.42 9.1E-06 46.1 4.8 34 16-49 23-57 (339)
481 cd01065 NAD_bind_Shikimate_DH 90.3 0.48 1E-05 39.9 4.7 34 17-50 19-53 (155)
482 PRK12475 thiamine/molybdopteri 90.2 0.43 9.4E-06 46.0 4.8 35 16-50 23-58 (338)
483 PRK03806 murD UDP-N-acetylmura 90.2 0.44 9.5E-06 48.2 5.1 35 17-51 6-40 (438)
484 PRK15116 sulfur acceptor prote 90.1 0.49 1.1E-05 43.7 4.8 35 16-50 29-64 (268)
485 TIGR00936 ahcY adenosylhomocys 90.0 0.38 8.2E-06 47.3 4.2 35 17-51 195-229 (406)
486 TIGR00507 aroE shikimate 5-deh 90.0 0.45 9.7E-06 44.5 4.6 34 17-50 117-150 (270)
487 PLN02602 lactate dehydrogenase 90.0 0.56 1.2E-05 45.3 5.4 33 18-50 38-72 (350)
488 TIGR02964 xanthine_xdhC xanthi 90.0 0.46 1E-05 43.4 4.6 36 16-51 99-134 (246)
489 PF00670 AdoHcyase_NAD: S-aden 90.0 0.4 8.6E-06 40.2 3.7 34 17-50 23-56 (162)
490 PRK01368 murD UDP-N-acetylmura 89.9 0.33 7.1E-06 49.1 3.8 33 17-50 6-38 (454)
491 PRK01390 murD UDP-N-acetylmura 89.9 0.34 7.3E-06 49.4 4.0 33 18-50 10-42 (460)
492 TIGR03376 glycerol3P_DH glycer 89.9 0.4 8.7E-06 46.2 4.2 32 19-50 1-40 (342)
493 PRK09496 trkA potassium transp 89.6 0.38 8.3E-06 48.9 4.1 34 18-51 1-34 (453)
494 PRK05476 S-adenosyl-L-homocyst 89.6 0.45 9.7E-06 47.1 4.4 35 17-51 212-246 (425)
495 KOG1335 Dihydrolipoamide dehyd 89.6 0.23 5E-06 47.1 2.2 41 16-56 210-250 (506)
496 PRK12548 shikimate 5-dehydroge 89.5 0.57 1.2E-05 44.2 4.9 34 17-50 126-160 (289)
497 PLN02256 arogenate dehydrogena 89.4 0.53 1.1E-05 44.7 4.6 35 16-50 35-69 (304)
498 cd01483 E1_enzyme_family Super 89.3 0.64 1.4E-05 38.6 4.6 32 19-50 1-33 (143)
499 TIGR02356 adenyl_thiF thiazole 89.3 0.66 1.4E-05 41.1 4.9 35 15-49 19-54 (202)
500 PRK03815 murD UDP-N-acetylmura 89.3 0.45 9.7E-06 47.2 4.2 31 18-49 1-31 (401)
No 1
>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]
Probab=100.00 E-value=3.8e-69 Score=492.92 Aligned_cols=511 Identities=52% Similarity=0.835 Sum_probs=425.5
Q ss_pred CcccccccccccccCCCCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCCCCceeecccccCCeeecccchhhhcchhh
Q 048009 1 MWRRSFTSTTSALKEKKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAVTEELIPGFKFSRCSYLQSLLRPS 80 (531)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~GG~~~s~~~~~g~~~d~g~~~~~~~~~~ 80 (531)
.|||+|...+. .+.||++|||+|+.||+||.+|++.|.+|+|+|++..+||.+.+...++||.|+++.+.+.+..|.
T Consensus 1 ~~rR~fS~~~~---~~~ydavvig~GhnGL~aaayl~r~g~~V~vlerrhv~gGaavteeivpGfKfsr~syL~slLrp~ 77 (561)
T KOG4254|consen 1 SGRRSFSSLSA---KPEYDAVVIGGGHNGLTAAAYLARYGQSVAVLERRHVIGGAAVTEEIVPGFKFSRASYLLSLLRPR 77 (561)
T ss_pred CccccccccCC---CcccceEEecCCccchhHHHHHHhcCcceEEEEEeeecCcceeeehhccccccchHHHHHHhhccc
Confidence 48888877655 457999999999999999999999999999999999999999988889999999999998888875
Q ss_pred hhhc------Ccc--------------------------cccchhhhc--cchhhhHHHHHHHHHHHHHHHHHHhhcCCC
Q 048009 81 LIKC------GTR--------------------------IGETWNEVV--EAKSIIVYAIFEDQLDKFSQFVDLLFDSSP 126 (531)
Q Consensus 81 ~~~~------gl~--------------------------~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (531)
..+. |++ ...+..++. ...+...++.+.+.+..+...+..+.+..+
T Consensus 78 ~~~~~~l~r~gl~l~~r~p~sft~~~~~~lp~~lllg~dm~~n~~~i~kfs~~da~~~peye~fl~~~~~~~~pl~d~~~ 157 (561)
T KOG4254|consen 78 GPQELELKRHGLRLHERSPCSFTPSLMGYLPEGLLLGRDMAENQKEIAKFSQPDARAYPEYEKFLVELYGAIDPLLDAAP 157 (561)
T ss_pred ccccchHhhhhhhhccCCCccccchhhccchhhhhhccccccchhhhhhhcCCccccchhHHHHHHHHHhccchhhhccc
Confidence 4443 332 011122232 334566777777777777777777766554
Q ss_pred cccccCCCcchhhhhhhhhhhhhHHHHHHHHHhcChhhHHHHHHHHhccHHHHhhcccCChhHHHHHhhhhhhccCCCCC
Q 048009 127 PELLQGSSSYSHQFKNKIRNSAFWAHCLRRAISLGQKDLVEFVDLLLSPASKVLNKWFETDVLKATLATDAVIGTMSSVH 206 (531)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~g~~~~~~ 206 (531)
.. ...+.+......-....+.+.+..+.......+..+.+....+....+.+||+.+.++..+...++++...++.
T Consensus 158 ~~----~~~~~~~~l~~~~~~~~~~~pl~l~~~i~~~~~~~~~~~~~ap~~k~~~~~fesk~~ka~l~tDavi~~~asv~ 233 (561)
T KOG4254|consen 158 AD----PPLFIHGLLLVLYTLASTYAPLLLAGFIKMKPLGALYELLLAPISKVLNDWFESKDLKATLATDAVIGLLASVH 233 (561)
T ss_pred cc----cchhhhhhhHHHHHHHHHhhhHHHhhHhhcCcHHHHHHHHhcchhhHHhhhhhccchhhhhhHHHHHHhhcccC
Confidence 11 11222222222222223334444444445566777888888888888999999999999998888898888999
Q ss_pred CCChHHHHHHHHhhccCCCCCccccccCchHHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCe
Q 048009 207 TPGSGYVLLHHVMGETDGNPGIWSYVEGGMGSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSI 286 (531)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~ 286 (531)
+++..+.+++++++.++...+.|.||.||+..++.++++.++++|++|.+++.|.+|..++ |+++||+++||+++.++.
T Consensus 234 ~pgt~yvllh~vlg~~d~~~g~~~Yp~GG~Gavs~aia~~~~~~GaeI~tka~Vq~Illd~-gka~GV~L~dG~ev~sk~ 312 (561)
T KOG4254|consen 234 TPGTGYVLLHHVLGELDGHKGGWGYPRGGMGAVSFAIAEGAKRAGAEIFTKATVQSILLDS-GKAVGVRLADGTEVRSKI 312 (561)
T ss_pred CCCcHHHHHHHHHHhhcccCCcccCCCCChhHHHHHHHHHHHhccceeeehhhhhheeccC-CeEEEEEecCCcEEEeee
Confidence 9999999999999999999999999999999999999999999999999999999999999 999999999999999999
Q ss_pred EEecCChHhHHhhcCCCCCCChHHHHHhhccCCCCCeEEEeeecCCCCccccccCCCCCCCCCcceEEEECCCCHHHHHH
Q 048009 287 VLSNATPYKTFMDLVPGNILPDDFILSIKHSDYSSGTTKINLAVDKLPQFQCCKLSHPDPGPQHVGTIHIGSESMEEIHS 366 (531)
Q Consensus 287 VV~aa~~~~~~~~ll~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (531)
||++|++|.|+.+|++.+.+|.++ .++++.+...+.+ ++.|.|..++.....+.|+|...++...+++.....
T Consensus 313 VvSNAt~~~Tf~kLlp~e~LPeef--~i~q~d~~spv~k-----~~~psFl~~~~~~~~plph~~~~i~~~~ed~~~~H~ 385 (561)
T KOG4254|consen 313 VVSNATPWDTFEKLLPGEALPEEF--VIQQLDTVSPVTK-----DKLPSFLCLPNTKSLPLPHHGYTIHYNAEDTQAHHR 385 (561)
T ss_pred eecCCchHHHHHHhCCCccCCchh--hhhhccccccccc-----ccCcceeecCCCCCCCCCccceeEEecCchHHHHHH
Confidence 999999999999999999999887 5666666555554 344555544444323457888889998888877777
Q ss_pred HHHHHHcCCCCCCCeEEEEeCCCCCCCCCCCCceEEEEEeccccCCCCCCCC-CChHHHHHHHHHHHHHHHHhCCCCCCc
Q 048009 367 ACQEAVNGLPSRRPIIEMTIPSVLDKTISPPGNHVINLFIQYTPYKPSDGSW-MDPAYRDSFANRCFSLIDEYAPGFSSS 445 (531)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~s~~d~~~ap~G~~~l~~~~~~~~~~~~~~~~-~~~~~k~~~~~~~~~~l~~~~P~~~~~ 445 (531)
+..+.++|..+..|.|++++||..||+.+|+|+|+|.++++|.|+.+++..| +++++|+++++++++.+++++|+|++.
T Consensus 386 ~v~D~~~gl~s~~pvI~~siPS~lDptlappg~Hvl~lf~~~t~~~w~g~~~~eye~~K~~~ae~~~~~ie~l~Pgfsss 465 (561)
T KOG4254|consen 386 AVEDPRNGLASHRPVIELSIPSSLDPTLAPPGKHVLHLFTQYTPEEWEGGLKGEYETKKEAFAERVFSVIEKLAPGFSSS 465 (561)
T ss_pred HHhChhhcccccCCeEEEecccccCCCcCCCCceEEEEeccCCccccccCCcccchHHHHHHHHHHHHHHHHHcCCccce
Confidence 7777788888999999999999999999999999999999999988777776 778899999999999999999999999
Q ss_pred eeEEEecCcchHHHHhCCCCCcccccCCCccccccCCCCCCCCCCCCCCCCeeecCCCCCCCCCcCCchHHHHHHHHHHH
Q 048009 446 IIGYDMLTPPDLEREIGLTGGNIFHGAMGLDSLFLMRPVKGWSNYRTPLQGLYMCGSGTHPGGGVMGAPGRNAAGIVLQD 525 (531)
Q Consensus 446 i~~~~~~tp~~~~~~~~~~~G~~~~~~~~~~~~~~~rp~~~~~~~~t~~~~ly~aG~~~~~g~g~~~~sg~~aa~~i~~~ 525 (531)
++..++.||.|.+++++.++|++|+.+..+++....||.+.|.+++|||+|||+||+++|||+|++++.|+++|...+.+
T Consensus 466 v~~~dvgTP~t~qr~l~~~~Gn~~~~~~~ld~g~l~~Pv~~~s~y~tPI~~LYlcGs~afPGgGV~a~aG~~~A~~a~~~ 545 (561)
T KOG4254|consen 466 VESYDVGTPPTHQRFLGRPGGNIFHGAMGLDQGYLHRPVMAWSNYSTPIPGLYLCGSGAFPGGGVMAAAGRLAAHSAILD 545 (561)
T ss_pred EEEEecCCCchhhHHhcCCCCcccCcccccccccccCCccccccCCCCCCceEEecCCCCCCCCccccchhHHHHHHhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999988765
Q ss_pred h
Q 048009 526 L 526 (531)
Q Consensus 526 ~ 526 (531)
.
T Consensus 546 ~ 546 (561)
T KOG4254|consen 546 R 546 (561)
T ss_pred h
Confidence 4
No 2
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=100.00 E-value=3.7e-55 Score=447.32 Aligned_cols=470 Identities=23% Similarity=0.345 Sum_probs=322.9
Q ss_pred EEEECCChhHHHHHHHHHHcCCcEEEEccCCCCCceeecccccCCeeecccchhhhcch--hhhhhc-Cc--ccccchhh
Q 048009 20 ALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAVTEELIPGFKFSRCSYLQSLLR--PSLIKC-GT--RIGETWNE 94 (531)
Q Consensus 20 vvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~GG~~~s~~~~~g~~~d~g~~~~~~~~--~~~~~~-gl--~~~~~~~~ 94 (531)
|||||||++||+||.+|+++|++|+|+|+++++||+++++. ..||.||.|++++.... ..+++. |+ ...+.+..
T Consensus 1 vvVIGaG~~GL~aA~~La~~G~~V~VlE~~~~~GG~~~t~~-~~G~~fD~G~~~~~~~~~~~~l~~~lg~~l~~~l~~~~ 79 (502)
T TIGR02734 1 AVVIGAGFGGLALAIRLAAAGIPVTVVEQRDKPGGRAGVLE-DDGFRFDTGPTVITMPEALEELFALAGRDLADYVELVP 79 (502)
T ss_pred CEEECcCHHHHHHHHHHHhCCCcEEEEECCCCCcCceEEEe-cCCeEEecCCeEEccccHHHHHHHHcCCChhheEEEEE
Confidence 69999999999999999999999999999999999999987 68999999998754321 122222 32 11111100
Q ss_pred hc-----cchhhhHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCcchhhhhhhhhhhhhHHHHHHHHHhcChh------
Q 048009 95 VV-----EAKSIIVYAIFEDQLDKFSQFVDLLFDSSPPELLQGSSSYSHQFKNKIRNSAFWAHCLRRAISLGQK------ 163 (531)
Q Consensus 95 ~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 163 (531)
.. ...+...+. +....+.+...+..+. +.....+..+.+.....+. ............
T Consensus 80 ~~~~~~~~~~~g~~~~-~~~~~~~~~~~l~~~~----p~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~ 148 (502)
T TIGR02734 80 LDPFYRLCWEDGSQLD-VDNDQEELEAQIARFN----PGDVAGYRRFLDYAERVYR------EGYRKLGYVPFLSPRDLL 148 (502)
T ss_pred CCCceEEECCCCCEEE-ecCCHHHHHHHHHHhC----cccHHHHHHHHHHHHHHHH------HHHHHHhhCCCCCHHHHH
Confidence 00 000000000 0000111111111110 0000000111111110000 000000000000
Q ss_pred ---hHHHHHHHHhccHHHHhhcccCChhHHHHHhhhh-hhccCCCCCCCChHHHHHHHHhhccCCCCCccccccCchHHH
Q 048009 164 ---DLVEFVDLLLSPASKVLNKWFETDVLKATLATDA-VIGTMSSVHTPGSGYVLLHHVMGETDGNPGIWSYVEGGMGSV 239 (531)
Q Consensus 164 ---~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~l 239 (531)
....+......++.+++++++.++.++.++.... +.+. .+......+.++... ....+.| ++.||+..+
T Consensus 149 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~l~~~l~~~~~~~g~--~p~~~~~~~~l~~~~----~~~~g~~-~~~gG~~~l 221 (502)
T TIGR02734 149 RADLPQLLALLAWRSLYSKVARFFSDERLRQAFSFHALFLGG--NPFRTPSIYALISAL----EREWGVW-FPRGGTGAL 221 (502)
T ss_pred hHhhHhhhhccCcCCHHHHHHhhcCCHHHHHHhcccceeecc--CcccchHHHHHHHHH----HhhceEE-EcCCCHHHH
Confidence 0001112246788899999999999999887433 3332 333333334333322 2234556 899999999
Q ss_pred HHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChHhHHhhcCCCCCCChHHHHHhhccCC
Q 048009 240 SMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYKTFMDLVPGNILPDDFILSIKHSDY 319 (531)
Q Consensus 240 ~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~~~~~~ll~~~~~~~~~~~~i~~~~~ 319 (531)
+++|.+.++++|++|+++++|++|..++ +++++|++++|+++.||.||+|+++..++..|++.+..++...+.+++.++
T Consensus 222 ~~al~~~~~~~G~~i~~~~~V~~i~~~~-~~~~~V~~~~g~~~~ad~VI~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 300 (502)
T TIGR02734 222 VAAMAKLAEDLGGELRLNAEVIRIETEG-GRATAVHLADGERLDADAVVSNADLHHTYRRLLPNHPRRRYPAARLSRKRP 300 (502)
T ss_pred HHHHHHHHHHCCCEEEECCeEEEEEeeC-CEEEEEEECCCCEEECCEEEECCcHHHHHHHhcCccccccccccccccCCc
Confidence 9999999999999999999999999887 888889999998899999999999988777788665455555567778888
Q ss_pred CCCeEEEeeecCCCC-ccccccCCCCCCCCCcceEEEECCCCHHHHHHHHHHHHcCCCCCCCeEEEEeCCCCCCCCCCCC
Q 048009 320 SSGTTKINLAVDKLP-QFQCCKLSHPDPGPQHVGTIHIGSESMEEIHSACQEAVNGLPSRRPIIEMTIPSVLDKTISPPG 398 (531)
Q Consensus 320 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~d~~~ap~G 398 (531)
+.+.+++++++++.+ .+. ...+| ++++..+....+... ...+.++++|++++++||..||+++|+|
T Consensus 301 s~s~~~~~lgl~~~~~~~~--------~~~~~--~~~~~~~~~~~~~~~---~~~g~~~~~p~~~v~~~s~~dp~~aP~G 367 (502)
T TIGR02734 301 SPSLFVLYFGLLGVDGHWP--------QLAHH--TLCFGPRYKELFDEI---FRKGRLAEDPSLYLHRPTVTDPSLAPPG 367 (502)
T ss_pred CCeeeEEEEeeccccCcCC--------CcCce--eEecCcCHHHHHHHH---hcCCCCCCCCcEEEEcCCCCCCCCCCCC
Confidence 889999999999644 221 11122 566644332222222 1346788899999999999999999999
Q ss_pred ceEEEEEeccccCC-CCCCCCCChHHHHHHHHHHHHHHHHh-CCCCCCceeEEEecCcchHHHHhCCCCCcccccCCCcc
Q 048009 399 NHVINLFIQYTPYK-PSDGSWMDPAYRDSFANRCFSLIDEY-APGFSSSIIGYDMLTPPDLEREIGLTGGNIFHGAMGLD 476 (531)
Q Consensus 399 ~~~l~~~~~~~~~~-~~~~~~~~~~~k~~~~~~~~~~l~~~-~P~~~~~i~~~~~~tp~~~~~~~~~~~G~~~~~~~~~~ 476 (531)
++++++++. .|+. .....|.. .|+++.+++++.|+++ +|+++++|+..++.||.||++|++.++|++||..+.+.
T Consensus 368 ~~~~~~~~~-~~~~~~~~~~~~~--~k~~~~~~il~~l~~~~~p~l~~~i~~~~~~TP~t~~~~~~~~~G~~~G~~~~~~ 444 (502)
T TIGR02734 368 CENLYVLAP-VPHLGTADVDWSV--EGPRYRDRILAYLEERAIPGLRDRIVVERTFTPADFRDRYNAWLGSAFSLEHTLT 444 (502)
T ss_pred CccEEEEEe-CCCCCCCCCCcHH--HHHHHHHHHHHHHHHhcCCChhHheEEEEEcCHHHHHHhcCCCCccccchhhchh
Confidence 999988764 5553 32335754 5899999999999998 99999999999999999999999999999999999889
Q ss_pred ccccCCCCCCCCCCCCCCCCeeecCCCCCCCCCcCCc--hHHHHHHHHHHHhhhh
Q 048009 477 SLFLMRPVKGWSNYRTPLQGLYMCGSGTHPGGGVMGA--PGRNAAGIVLQDLKKS 529 (531)
Q Consensus 477 ~~~~~rp~~~~~~~~t~~~~ly~aG~~~~~g~g~~~~--sg~~aa~~i~~~~~~~ 529 (531)
|...+||. ..+|+++|||+||+|++||+|++++ ||++||+.|+++++..
T Consensus 445 q~~~~rp~----~~~t~i~gLyl~G~~~~pG~Gv~g~~~sg~~~a~~il~~~~~~ 495 (502)
T TIGR02734 445 QSAWFRPH----NRDRKIDNLYLVGAGTHPGAGVPGVLGSAKATAKLMLGDLAPG 495 (502)
T ss_pred hcccCCCC----CCCCCCCCEEEeCCCCCCCCCHHHHHHHHHHHHHHHHhhccCC
Confidence 88778883 4578999999999999999999997 9999999999988764
No 3
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=100.00 E-value=6.6e-52 Score=420.83 Aligned_cols=467 Identities=23% Similarity=0.305 Sum_probs=304.8
Q ss_pred CcEEEECCChhHHHHHHHHHHcCCcEEEEccCCCCCceeecccccCCeeecccchhhhcc----hhhhhhc-----Cccc
Q 048009 18 WDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAVTEELIPGFKFSRCSYLQSLL----RPSLIKC-----GTRI 88 (531)
Q Consensus 18 ~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~GG~~~s~~~~~g~~~d~g~~~~~~~----~~~~~~~-----gl~~ 88 (531)
+||||||||++||+||..|+++|++|+|+||++.+||+++++. .+||.||.|++.+... .++.+.. +...
T Consensus 1 ~dvvViGaG~~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~~~~-~~G~~fd~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (493)
T TIGR02730 1 YDAIVIGSGIGGLVTATQLAVKGAKVLVLERYLIPGGSAGYFE-REGYRFDVGASMIFGFGDKGTTNLLTRALAAVGRKL 79 (493)
T ss_pred CcEEEECCcHHHHHHHHHHHHCCCcEEEEECCCCCCCceeEec-cCCEEEEecchhheecCCcccccHHHHHHHHcCCcc
Confidence 6999999999999999999999999999999999999999987 6999999999875322 2332221 2110
Q ss_pred ccchhh--hc-cchhhhHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCcchhhhhhhhhhh--------hhHHHHHHHH
Q 048009 89 GETWNE--VV-EAKSIIVYAIFEDQLDKFSQFVDLLFDSSPPELLQGSSSYSHQFKNKIRNS--------AFWAHCLRRA 157 (531)
Q Consensus 89 ~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~ 157 (531)
...... +. ...+...+. .....+.+...+..++ +.....+..|.+.....+... ..........
T Consensus 80 ~~~~~~~~~~~~~~~g~~~~-~~~d~~~~~~~l~~~~----P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (493)
T TIGR02730 80 ETIPDPVQIHYHLPNGLNVK-VHREYDDFIQELVAKF----PHEKEGIRRFYDECWQVFNCLNSMELLSLEEPRYLFRVF 154 (493)
T ss_pred cccCCCccEEEECCCCeeEe-eecCHHHHHHHHHHHC----chhHHHHHHHHHHHHHHHHHHHhhhhccccChHHHHHHH
Confidence 000000 00 000000000 0000011111110000 000000001111100000000 0000000000
Q ss_pred HhcChhhHHHHHHHHhccHHHHhhcccCChhHHHHHhhhhhhccCCC-CCCCChHHHHHHHHhhccCCCCCccccccCch
Q 048009 158 ISLGQKDLVEFVDLLLSPASKVLNKWFETDVLKATLATDAVIGTMSS-VHTPGSGYVLLHHVMGETDGNPGIWSYVEGGM 236 (531)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~ 236 (531)
.. .......+..+...++.+++++++.++.++..+....+.....+ ...+. .+..+.+. . ....+.| ++.||+
T Consensus 155 ~~-~~~~~~~~~~~~~~s~~~~~~~~~~~~~l~~~l~~~~~~~~~~p~~~~p~-~~~~~~~~-~--~~~~g~~-~~~gG~ 228 (493)
T TIGR02730 155 FK-HPLACLGLAKYLPQNAGDIARRYIRDPGLLKFIDIECFCWSVVPADQTPM-INAGMVFS-D--RHYGGIN-YPKGGV 228 (493)
T ss_pred hh-chhhhhHHHHHhhccHHHHHHHhcCCHHHHHHHHHHHHhccCCCcccchh-hhHHHhhc-c--cccceEe-cCCChH
Confidence 00 00111123334457889999999999999998874433222222 23332 22222111 0 1223444 899999
Q ss_pred HHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChHhHHhhcCCCCCCChHHHHHhhc
Q 048009 237 GSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYKTFMDLVPGNILPDDFILSIKH 316 (531)
Q Consensus 237 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~~~~~~ll~~~~~~~~~~~~i~~ 316 (531)
..++++|.+.++++|++|+++++|++|..++ +++.+|++.+|+++.||.||+|++++.++.+|++.+.+++.....+++
T Consensus 229 ~~l~~~L~~~~~~~G~~i~~~~~V~~I~~~~-~~~~gv~~~~g~~~~ad~vV~a~~~~~~~~~Ll~~~~~~~~~~~~~~~ 307 (493)
T TIGR02730 229 GQIAESLVKGLEKHGGQIRYRARVTKIILEN-GKAVGVKLADGEKIYAKRIVSNATRWDTFGKLLKAENLPKKEKNWQRN 307 (493)
T ss_pred HHHHHHHHHHHHHCCCEEEeCCeeeEEEecC-CcEEEEEeCCCCEEEcCEEEECCChHHHHHHhCCccccchhhHHHHhh
Confidence 9999999999999999999999999999987 888999999998899999999999999888899877677766667778
Q ss_pred cCCCCCeEEEeeecCCCCccccccCCCCCCCCCcceEEEECCCCHHHHHHHHHHHHcCCCCCCCeEEEEeCCCCCCCCCC
Q 048009 317 SDYSSGTTKINLAVDKLPQFQCCKLSHPDPGPQHVGTIHIGSESMEEIHSACQEAVNGLPSRRPIIEMTIPSVLDKTISP 396 (531)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~d~~~ap 396 (531)
++++.+.+++|++++..... .....| .+++ .+. . .....++++++++||..||+++|
T Consensus 308 ~~~s~s~~~~~l~l~~~~~p--------~~~~~~--~~~~-~~~-~-----------~~~~~~~~~~v~~ps~~dps~aP 364 (493)
T TIGR02730 308 YVKSPSFLSLHLGVKADVLP--------PGTECH--HILL-EDW-T-----------NLEKPQGTIFVSIPTLLDPSLAP 364 (493)
T ss_pred ccCCCceEEEEEEecCccCC--------CCCCcc--EEec-chh-h-----------ccCCCCCeEEEEeCCCCCCCCCc
Confidence 88888999999999973210 000112 2333 111 1 11234688999999999999999
Q ss_pred CCceEEEEEeccccCCCCCC--CCCChHHHHHHHHHHHHHHHHhCCCCCCceeEEEecCcchHHHHhCCCCCcccccCCC
Q 048009 397 PGNHVINLFIQYTPYKPSDG--SWMDPAYRDSFANRCFSLIDEYAPGFSSSIIGYDMLTPPDLEREIGLTGGNIFHGAMG 474 (531)
Q Consensus 397 ~G~~~l~~~~~~~~~~~~~~--~~~~~~~k~~~~~~~~~~l~~~~P~~~~~i~~~~~~tp~~~~~~~~~~~G~~~~~~~~ 474 (531)
+|+++++++++ .++..+.+ .-++++.|+++.+++++.|++++|+++++|+..++.||.|+++|++.++|+ ||....
T Consensus 365 ~G~~~i~~~~~-~~~~~w~~~~~~~y~~~k~~~~~~il~~l~~~~p~l~~~I~~~~~~TP~t~~r~~~~~~G~-~G~~~~ 442 (493)
T TIGR02730 365 EGHHIIHTFTP-SSMEDWQGLSPKDYEAKKEADAERIIDRLEKIFPGLDSAIDYKEVGTPRTHRRFLGRDSGT-YGPIPR 442 (493)
T ss_pred CCcEEEEEecC-CChhhccCCCcHHHHHHHHHHHHHHHHHHHHHCCChhhcEEEEEeeCchhHHHHhCCCCcc-cCCccc
Confidence 99999888753 23221110 001245789999999999999999999999999999999999999999988 665544
Q ss_pred ccccccCC-CCCCCCCCCCCCCCeeecCCCCCCCCCcCCc--hHHHHHHHHHHHhh
Q 048009 475 LDSLFLMR-PVKGWSNYRTPLQGLYMCGSGTHPGGGVMGA--PGRNAAGIVLQDLK 527 (531)
Q Consensus 475 ~~~~~~~r-p~~~~~~~~t~~~~ly~aG~~~~~g~g~~~~--sg~~aa~~i~~~~~ 527 (531)
..+...++ | ..+|+++|||+||+|++||+|++++ ||+.||+.|+++++
T Consensus 443 ~~~~~~~~~~-----~~~t~i~gLyl~G~~~~pG~Gv~g~~~sG~~~a~~i~~~~~ 493 (493)
T TIGR02730 443 RTLPGLLPMP-----FNRTAIPGLYCVGDSCFPGQGLNAVAFSGFACAHRVAADLG 493 (493)
T ss_pred ccccccccCC-----CCCCCCCCeEEecCcCCCCCCHHHHHHHHHHHHHHHHhhcC
Confidence 33333333 3 4689999999999999999999996 99999999998764
No 4
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=100.00 E-value=7.4e-51 Score=414.24 Aligned_cols=454 Identities=19% Similarity=0.272 Sum_probs=302.4
Q ss_pred CcEEEECCChhHHHHHHHHHHcCCcEEEEccCCCCCceeecccccCCeeecccchhhhcch-----hhhhhc-Ccccc-c
Q 048009 18 WDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAVTEELIPGFKFSRCSYLQSLLR-----PSLIKC-GTRIG-E 90 (531)
Q Consensus 18 ~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~GG~~~s~~~~~g~~~d~g~~~~~~~~-----~~~~~~-gl~~~-~ 90 (531)
.||+|||||++||+||..|+++|++|+|+|+++++||+++++. .+||.||.|+++..... +.++++ |+... .
T Consensus 2 ~dvvIIGaG~~GL~aa~~La~~G~~v~vlE~~~~~GG~~~t~~-~~G~~fD~G~~~~~~~~~~~~~~~~~~~lg~~~~~~ 80 (492)
T TIGR02733 2 TSVVVIGAGIAGLTAAALLAKRGYRVTLLEQHAQPGGCAGTFR-RRGFTFDVGATQVAGLEPGGIHARIFRELGIPLPEA 80 (492)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCccceec-cCCEEEeecceEEEecCcCCHHHHHHHHcCCCCccc
Confidence 6899999999999999999999999999999999999999987 68999999998865432 244433 54311 0
Q ss_pred c-hhhhc--cchhh-hHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCcchhhhhhhhhh-------h-----hhHHHHH
Q 048009 91 T-WNEVV--EAKSI-IVYAIFEDQLDKFSQFVDLLFDSSPPELLQGSSSYSHQFKNKIRN-------S-----AFWAHCL 154 (531)
Q Consensus 91 ~-~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~-----~~~~~~~ 154 (531)
. .+... ...+. ..+. .....+++...+...+ +.+ ..+.......+.. . .......
T Consensus 81 ~~~d~~~~~~~~dg~~~~~-~~~d~~~~~~~l~~~~---p~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (492)
T TIGR02733 81 KILDPACAVDLPDGSEPIP-LWHDPDRWQKERERQF---PGS-----ERFWQLCSQLHQSNWRFAGRDPVLPPRNYWDLL 151 (492)
T ss_pred ccCCCCcEEEECCCceEee-eecCHHHHHHHHHHHC---CCh-----HHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHH
Confidence 0 00000 00010 0000 0000111111111100 000 0011110000000 0 0000000
Q ss_pred HHHHhcChhhHHHHHHHHhccHHHHhhcc--cCChhHHHHHhhhhhhccCCCCCCCChHHHHHHHHhhccCCCCCccccc
Q 048009 155 RRAISLGQKDLVEFVDLLLSPASKVLNKW--FETDVLKATLATDAVIGTMSSVHTPGSGYVLLHHVMGETDGNPGIWSYV 232 (531)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (531)
......... ......+...++.++++++ +.++.++.++..........++..+...+..+. +.......|.| ++
T Consensus 152 ~~~~~~~~~-~~~~~~~~~~s~~~~l~~~~~~~~~~lr~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~G~~-~~ 227 (492)
T TIGR02733 152 QLVSALRPD-TLLTGPLSLLTVADLLRLCGLGDDRRLRRFLDLQLKLYSQEDADETAALYGATV--LQMAQAPHGLW-HL 227 (492)
T ss_pred HHHHhcChh-hhhhhhhhhhhHHHHHHHhCCCccHHHHHHHHHHHhhhccCChhhhhHHHHHHH--hhccccCCCce-ee
Confidence 000000111 0112223457888888875 889999998875432111123333333332211 11122334666 89
Q ss_pred cCchHHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCCC-----cEEEcCeEEecCChHhHHhhcCCCCCCC
Q 048009 233 EGGMGSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADG-----AQVHSSIVLSNATPYKTFMDLVPGNILP 307 (531)
Q Consensus 233 ~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g-----~~~~ad~VV~aa~~~~~~~~ll~~~~~~ 307 (531)
+||+++|+++|++.++++|++|+++++|++|..++ +++.+|++.+| +++.||+||+|+++..+ .+|++++.++
T Consensus 228 ~GG~~~l~~aL~~~~~~~G~~i~~~~~V~~I~~~~-~~~~gv~~~~~~~~~~~~~~ad~VI~~~~~~~~-~~ll~~~~~~ 305 (492)
T TIGR02733 228 HGSMQTLSDRLVEALKRDGGNLLTGQRVTAIHTKG-GRAGWVVVVDSRKQEDLNVKADDVVANLPPQSL-LELLGPLGLP 305 (492)
T ss_pred cCcHHHHHHHHHHHHHhcCCEEeCCceEEEEEEeC-CeEEEEEEecCCCCceEEEECCEEEECCCHHHH-HHhcCcccCC
Confidence 99999999999999999999999999999999987 77777877665 57899999999999885 5788766678
Q ss_pred hHHHHHhhccCCCCCeEEEeeecCCCC-ccccccCCCCCCCCCcceEEEECCCCHHHHHHHHHHHHcCCCCCCCeEEEEe
Q 048009 308 DDFILSIKHSDYSSGTTKINLAVDKLP-QFQCCKLSHPDPGPQHVGTIHIGSESMEEIHSACQEAVNGLPSRRPIIEMTI 386 (531)
Q Consensus 308 ~~~~~~i~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (531)
+...+.+++++++.+.+++++++++.. ++. ...|. ... + .....++++.
T Consensus 306 ~~~~~~~~~~~~s~~~~~v~l~~~~~~~~~~---------~~~~~--~~~-----------~--------~~~~~~~v~~ 355 (492)
T TIGR02733 306 PGYRKRLKKLPEPSGAFVFYLGVKRAALPVD---------CPPHL--QFL-----------S--------DHQGSLFVSI 355 (492)
T ss_pred HHHHHHHhcCCCCCceEEEEEeecccccCCC---------CCcce--eec-----------c--------CCCceEEEEe
Confidence 788888889999888999999998732 221 01121 111 0 0113667777
Q ss_pred CCCCCCCCCCCCceEEEEEe--ccccCCC-CCCCCCChHHHHHHHHHHHHHHHHhCCCCCCceeEEEecCcchHHHHhCC
Q 048009 387 PSVLDKTISPPGNHVINLFI--QYTPYKP-SDGSWMDPAYRDSFANRCFSLIDEYAPGFSSSIIGYDMLTPPDLEREIGL 463 (531)
Q Consensus 387 ~s~~d~~~ap~G~~~l~~~~--~~~~~~~-~~~~~~~~~~k~~~~~~~~~~l~~~~P~~~~~i~~~~~~tp~~~~~~~~~ 463 (531)
++ .||+++|+|++++++++ ++.+|.. ...+| .+.|+++++++++.+++++|+++++|+..++.||.||++|++.
T Consensus 356 ~~-~d~~~aP~G~~~l~~~~~~~~~~~~~~~~~~y--~~~k~~~~~~il~~le~~~p~l~~~i~~~~v~TP~t~~~~~~~ 432 (492)
T TIGR02733 356 SQ-EGDGRAPQGEATLIASSFTDTNDWSSLDEEDY--TAKKKQYTQTIIERLGHYFDLLEENWVHVELATPRTFERWTGR 432 (492)
T ss_pred CC-ccccCCCCCceEEEEEcCCCHHHHcCCCHHHH--HHHHHHHHHHHHHHHHHHCCCccccEEEEEccCCchHHHHhCC
Confidence 65 47899999999986654 3334321 11234 3468999999999999999999999999999999999999999
Q ss_pred CCCcccccCCCccccccCCCCCCCCCCCCCCCCeeecCCCCCCCCCcCCc--hHHHHHHHHHHH
Q 048009 464 TGGNIFHGAMGLDSLFLMRPVKGWSNYRTPLQGLYMCGSGTHPGGGVMGA--PGRNAAGIVLQD 525 (531)
Q Consensus 464 ~~G~~~~~~~~~~~~~~~rp~~~~~~~~t~~~~ly~aG~~~~~g~g~~~~--sg~~aa~~i~~~ 525 (531)
++|++||..+.+.|...+++ ..+|+++|||+||+++|||+|++++ ||+.||+.|+++
T Consensus 433 ~~G~~~G~~~~~~q~~~~~~-----~~~t~i~gLyl~G~~~~pG~Gv~g~~~sg~~~a~~i~~~ 491 (492)
T TIGR02733 433 PQGIVGGLGQRPSTFGPFGL-----SSRTPVKGLWLCGDSIHPGEGTAGVSYSALMVVRQILAS 491 (492)
T ss_pred CCcEECCCCcCccccCCcCC-----CCCCCCCCeEEecCccCCCCcHHHHHHHHHHHHHHHhhc
Confidence 99999999988888655554 4478999999999999999999998 999999999864
No 5
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=1.5e-50 Score=406.54 Aligned_cols=449 Identities=34% Similarity=0.511 Sum_probs=308.8
Q ss_pred CCCCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCCCCceeecccccCCeeecccchhhhcchhh-hhhc-C-cccc-c
Q 048009 15 EKKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAVTEELIPGFKFSRCSYLQSLLRPS-LIKC-G-TRIG-E 90 (531)
Q Consensus 15 ~~~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~GG~~~s~~~~~g~~~d~g~~~~~~~~~~-~~~~-g-l~~~-~ 90 (531)
|..+||||||||++||+||.+|+++|++|+|+||++.+||++++.+ ..||.||+|++++.+..+. ++++ + +... +
T Consensus 1 ~~~~dvvVIGaG~~GL~aAa~LA~~G~~V~VlE~~~~~GG~a~t~e-~~Gf~fd~G~~~~~~~~~~~~~~~l~~l~~~~l 79 (487)
T COG1233 1 MPMYDVVVIGAGLNGLAAAALLARAGLKVTVLEKNDRVGGRARTFE-LDGFRFDTGPSWYLMPDPGPLFRELGNLDADGL 79 (487)
T ss_pred CCCccEEEECCChhHHHHHHHHHhCCCEEEEEEecCCCCcceEEEe-ccceEeccCcceeecCchHHHHHHhccCcccce
Confidence 3579999999999999999999999999999999999999999987 5599999999776554442 3322 3 3200 0
Q ss_pred chh--------------hhc---------------cchhhhHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCcchhhhh
Q 048009 91 TWN--------------EVV---------------EAKSIIVYAIFEDQLDKFSQFVDLLFDSSPPELLQGSSSYSHQFK 141 (531)
Q Consensus 91 ~~~--------------~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (531)
... .+. .+.+...+..+.....+.++.+... ........
T Consensus 80 ~~~~~~~~~~~~~~~g~~~~~~~d~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~--------- 147 (487)
T COG1233 80 DLLPPDPAYRVFLPDGDAIDVYTDLEATAELLESLEPGDGEALARYLRLLARLYELLAAL---LLAPPRSE--------- 147 (487)
T ss_pred eeeccCCceeeecCCCCEEEecCCHHHHHHHHHhhCcccHHHHHHHHHHHHHhhHHHHhh---cCCCchhh---------
Confidence 000 000 1112222222222111111111111 00000000
Q ss_pred hhhhhhhhHHHHHHHHHhcChhhHHHHHHHHhccHHHHhhcccCChhHHHHHhhhhhhccCCCCCCCChHHHHHHHHhhc
Q 048009 142 NKIRNSAFWAHCLRRAISLGQKDLVEFVDLLLSPASKVLNKWFETDVLKATLATDAVIGTMSSVHTPGSGYVLLHHVMGE 221 (531)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 221 (531)
.. ...........+......+..+++..+|.++.++..+......+. .++..+++.+.++++.
T Consensus 148 -----------~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~f~~~~~r~~~~~~~~~~~-~~p~~~~a~~~~~~~~--- 210 (487)
T COG1233 148 -----------LL--LVPDTPERLLRLLGFSLTSALDFFRGRFGSELLRALLAYSAVYGG-APPSTPPALYLLLSHL--- 210 (487)
T ss_pred -----------hh--hccccHHHHHHHHHHhhhhHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCCchhHHHHHHHHh---
Confidence 00 001112233344445567777778878999999999886554443 4555555334343333
Q ss_pred cCCCCCccccccCchHHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChHhHHhhcC
Q 048009 222 TDGNPGIWSYVEGGMGSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYKTFMDLV 301 (531)
Q Consensus 222 ~~~~~~~~~~~~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~~~~~~ll 301 (531)
....|.+ +|+||++.|+++|++.++++||+|+++++|++|..++ |+.+++++.+|+.+++|.||+++.+ .+...+.
T Consensus 211 -~~~~G~~-~p~GG~~al~~aL~~~~~~~Gg~I~~~~~V~~I~v~~-g~g~~~~~~~g~~~~ad~vv~~~~~-~~~~~l~ 286 (487)
T COG1233 211 -GLSGGVF-YPRGGMGALVDALAELAREHGGEIRTGAEVSQILVEG-GKGVGVRTSDGENIEADAVVSNADP-ALLARLL 286 (487)
T ss_pred -cccCCee-eeeCCHHHHHHHHHHHHHHcCCEEECCCceEEEEEeC-CcceEEeccccceeccceeEecCch-hhhhhhh
Confidence 3344555 9999999999999999999999999999999999998 8877788888877999999999998 4334444
Q ss_pred CCCCCChHHHHHhhccCCCCCeEEEeeecCCCCccccccCCCCCCCCCcceEEEECCCCHHHHHHHHHHHHcCCCCCCCe
Q 048009 302 PGNILPDDFILSIKHSDYSSGTTKINLAVDKLPQFQCCKLSHPDPGPQHVGTIHIGSESMEEIHSACQEAVNGLPSRRPI 381 (531)
Q Consensus 302 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (531)
+.. .. .+......+..+.+..+++++.. . ....+++.++. .++...+...|.+ ..|..+ +
T Consensus 287 ~~~-~~---~~~~~~~~~~~~al~~~~g~~~~--~---------~~~~~~~~~~~-~~~~~~~~~~~~~-~~g~~~---~ 346 (487)
T COG1233 287 GEA-RR---PRYRGSYLKSLSALSLYLGLKGD--L---------LPLAHHTTILL-GDTREQIEEAFDD-RAGRPP---P 346 (487)
T ss_pred hhh-hh---hccccchhhhhHHHHhccCCCCC--C---------cchhhcceEec-CCcHHHHHHHhhh-hcCCCC---c
Confidence 321 11 11222233335556666666653 0 01123334454 7778888888877 667655 8
Q ss_pred EEEEeCCCCCCCCCCCCceEEEEEeccccCCCCCCCCCChHHHHHHHHHHHHHHHHhCCCCCCceeEEEecCcchHHHHh
Q 048009 382 IEMTIPSVLDKTISPPGNHVINLFIQYTPYKPSDGSWMDPAYRDSFANRCFSLIDEYAPGFSSSIIGYDMLTPPDLEREI 461 (531)
Q Consensus 382 ~~~~~~s~~d~~~ap~G~~~l~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~~~~P~~~~~i~~~~~~tp~~~~~~~ 461 (531)
+++++||..||++||+|++.+.+ .+.++. ..+.| ++.|+++.+. ++.+++++|+++++|+..++.||.+++++.
T Consensus 347 ~~v~~ps~~Dps~AP~G~~~~~~--~~~~~~-~~~~~--~~~~~~~~~~-~~~~~~~~p~~~~~iv~~~~~tp~~~e~~~ 420 (487)
T COG1233 347 LYVSIPSLTDPSLAPEGKHSTFA--QLVPVP-SLGDY--DELKESLADA-IDALEELAPGLRDRIVAREVLTPLDLERYL 420 (487)
T ss_pred eEEeCCCCCCCccCCCCCcceee--eeeecC-cCCCh--HHHHHHHHHH-HHHHhhcCCCcccceeEEEEeChHHHHHhc
Confidence 99999999999999999983322 223332 11123 3467888888 889999999999999999999999999999
Q ss_pred CCCCCcccccCCCccccccCCCCCCCCCCCCCCCCeeecCCCCCCCCCcCCchHHHHHHHHHHHhh
Q 048009 462 GLTGGNIFHGAMGLDSLFLMRPVKGWSNYRTPLQGLYMCGSGTHPGGGVMGAPGRNAAGIVLQDLK 527 (531)
Q Consensus 462 ~~~~G~~~~~~~~~~~~~~~rp~~~~~~~~t~~~~ly~aG~~~~~g~g~~~~sg~~aa~~i~~~~~ 527 (531)
+.+.|+++|..+.++|...+||.++ +|||+|||++|++||||+|+++++|..++..++.++.
T Consensus 421 ~~~~G~~~~~~~~~~q~~~~rp~~~----~t~i~~LYl~Ga~t~PG~Gv~g~~g~~~a~~~~~~~~ 482 (487)
T COG1233 421 GLPGGDIFGGAHTLDQLGPFRPPPK----STPIKGLYLVGASTHPGGGVPGVPGSAAAVALLIDLD 482 (487)
T ss_pred CCCCCcccchhcChhhhcCCCCCCC----CCCcCceEEeCCcCCCCCCcchhhhhHHHHHhhhccc
Confidence 9999999999999999999999532 7999999999999999999999977777777666543
No 6
>PLN02612 phytoene desaturase
Probab=100.00 E-value=1.1e-32 Score=281.75 Aligned_cols=432 Identities=16% Similarity=0.231 Sum_probs=249.8
Q ss_pred CCCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCCCCceeecccccCCeeecccchhhhcchhhhhhc----Ccccccc
Q 048009 16 KKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAVTEELIPGFKFSRCSYLQSLLRPSLIKC----GTRIGET 91 (531)
Q Consensus 16 ~~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~GG~~~s~~~~~g~~~d~g~~~~~~~~~~~~~~----gl~~~~~ 91 (531)
...+|+|||||++||+||++|+++|++|+|+|+++++||++.++....|+.+|.|.+++...++++.+. |+.....
T Consensus 92 ~~~~v~iiG~G~~Gl~~a~~l~~~g~~~~~~e~~~~~gG~~~s~~~~~G~~~D~G~h~~~g~~~~~~~ll~elG~~~~~~ 171 (567)
T PLN02612 92 KPLKVVIAGAGLAGLSTAKYLADAGHKPILLEARDVLGGKVAAWKDEDGDWYETGLHIFFGAYPNVQNLFGELGINDRLQ 171 (567)
T ss_pred CCCCEEEECCCHHHHHHHHHHHhcCCeEEEEecCCCCCCcceeeEcCCCCEEcCCceEEeCCCchHHHHHHHhCCcccce
Confidence 458999999999999999999999999999999999999999876457899999999877766665443 5532221
Q ss_pred hhhhc----cchhhhHHH--HHHHHH-HHHHHHHHHhhcCCCcccccCCCcchhhhhhhhhhhhhHHHHHHHHHhcChhh
Q 048009 92 WNEVV----EAKSIIVYA--IFEDQL-DKFSQFVDLLFDSSPPELLQGSSSYSHQFKNKIRNSAFWAHCLRRAISLGQKD 164 (531)
Q Consensus 92 ~~~~~----~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (531)
+.... .......+. .+.... ..+.... .++...+ ...+.+++... .... ... ...
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~p~~~P~~l~~~~-~~l~~~~------~ls~~~kl~~~-------~~~~-~~~---~~~ 233 (567)
T PLN02612 172 WKEHSMIFAMPNKPGEFSRFDFPEVLPAPLNGIW-AILRNNE------MLTWPEKIKFA-------IGLL-PAI---VGG 233 (567)
T ss_pred ecccceEEEecCCCCceeeCcCchhcCChhhhhH-HHHhcCc------cCCHHHHHHHH-------Hhhh-HHh---ccc
Confidence 11100 000000000 000000 0000000 0100000 00011111100 0000 000 000
Q ss_pred HHHHHHHHhccHHHHhhcccCChhHHH-HHhhhhhhcc-CCCCCCCChHHHH--HHHHhhccCCCCCccccccCch-HHH
Q 048009 165 LVEFVDLLLSPASKVLNKWFETDVLKA-TLATDAVIGT-MSSVHTPGSGYVL--LHHVMGETDGNPGIWSYVEGGM-GSV 239 (531)
Q Consensus 165 ~~~~~~~~~~~~~~~l~~~~~~~~l~~-~~~~~~~~g~-~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~gG~-~~l 239 (531)
.....+....++.+|+++....+.+.. ++... +.+. ...+......+.+ +..++. ........++.|+. +.+
T Consensus 234 ~~~~~~~d~~Sv~e~l~~~~~~~~~~~~~~~~l-~~~~~~~~p~~~S~~~~l~~l~~~l~--~~~gs~~~~~~G~~~~~l 310 (567)
T PLN02612 234 QAYVEAQDGLSVKEWMRKQGVPDRVNDEVFIAM-SKALNFINPDELSMQCILIALNRFLQ--EKHGSKMAFLDGNPPERL 310 (567)
T ss_pred chhhhhcCcCcHHHHHHhcCCCHHHHHHHHHHH-HHHhcCCCHHHhhHHHHHHHHHHHHh--ccCCceEeeecCCchHHH
Confidence 011123346788888888655554443 33211 1111 1122222222221 111111 11112233566665 679
Q ss_pred HHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChHhHHhhcCCCCCCChHHHHHhhccCC
Q 048009 240 SMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYKTFMDLVPGNILPDDFILSIKHSDY 319 (531)
Q Consensus 240 ~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~~~~~~ll~~~~~~~~~~~~i~~~~~ 319 (531)
++.|.+.+++.|++|++|++|++|..++++++++|++.+|+++.||+||+|+++.. +..|++....+..+.+.++++.+
T Consensus 311 ~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~v~~~~G~~~~ad~VI~a~p~~~-l~~Ll~~~~~~~~~~~~l~~l~~ 389 (567)
T PLN02612 311 CMPIVDHFQSLGGEVRLNSRIKKIELNDDGTVKHFLLTNGSVVEGDVYVSATPVDI-LKLLLPDQWKEIPYFKKLDKLVG 389 (567)
T ss_pred HHHHHHHHHhcCCEEEeCCeeeEEEECCCCcEEEEEECCCcEEECCEEEECCCHHH-HHHhCcchhcCcHHHHHHHhcCC
Confidence 99999999999999999999999998654667778888998899999999886655 67788764334455666666665
Q ss_pred CCCeEEEeeecCCCCccccccCCCCCCCCCcceEEEECCCCHHHHHHHHHHHHcCCCCCCCeEEEEeCCCCCCCCCCCCc
Q 048009 320 SSGTTKINLAVDKLPQFQCCKLSHPDPGPQHVGTIHIGSESMEEIHSACQEAVNGLPSRRPIIEMTIPSVLDKTISPPGN 399 (531)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~d~~~ap~G~ 399 (531)
.+++++++.++++... . ..+ ++ +..+. ...++...++. .+.++++|+
T Consensus 390 -~~v~~v~l~~dr~~~~--------~--~~~--~~-~~~~~------------------~~~~~~d~S~~-~~~~~~~~~ 436 (567)
T PLN02612 390 -VPVINVHIWFDRKLKN--------T--YDH--LL-FSRSP------------------LLSVYADMSTT-CKEYYDPNK 436 (567)
T ss_pred -CCeEEEEEEECcccCC--------C--CCc--ee-ecCCC------------------Cceeehhhhhc-chhhcCCCC
Confidence 6899999999986311 0 111 22 21110 01112222222 234556677
Q ss_pred eEEEEEeccccCCCCCCCCCChHHHHHHHHHHHHHHHHhCCCC------CCcee-EEEecCcchHHHHhCCCCCcccccC
Q 048009 400 HVINLFIQYTPYKPSDGSWMDPAYRDSFANRCFSLIDEYAPGF------SSSII-GYDMLTPPDLEREIGLTGGNIFHGA 472 (531)
Q Consensus 400 ~~l~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~~~~P~~------~~~i~-~~~~~tp~~~~~~~~~~~G~~~~~~ 472 (531)
+++.+.. .+.. .|... .++++++.++++|++++|+. +..+. ...+.+|.++..+ .+++.
T Consensus 437 ~ll~~~~--~~a~----~~~~~-sdeei~e~vl~~L~~lfp~~~~~~~~~~~i~~~~~v~~P~a~~~~--~pg~~----- 502 (567)
T PLN02612 437 SMLELVF--APAE----EWISR-SDEDIIDATMKELAKLFPDEISADQSKAKILKYHVVKTPRSVYKT--VPNCE----- 502 (567)
T ss_pred eEEEEEE--EcCh----hhhcC-CHHHHHHHHHHHHHHHCCcccccccCCceEEEEEEeccCCceEEe--CCCCc-----
Confidence 6555432 2221 34332 35899999999999999976 22333 3566788776321 22211
Q ss_pred CCccccccCCCCCCCCCCCCCCCCeeecCCCCCCC--CCcCCc--hHHHHHHHHHHHhhh
Q 048009 473 MGLDSLFLMRPVKGWSNYRTPLQGLYMCGSGTHPG--GGVMGA--PGRNAAGIVLQDLKK 528 (531)
Q Consensus 473 ~~~~~~~~~rp~~~~~~~~t~~~~ly~aG~~~~~g--~g~~~~--sg~~aa~~i~~~~~~ 528 (531)
.++| ..+||++|||||||||.++ ++++|| ||+.||+.|+++++.
T Consensus 503 -------~~rp-----~~~tPi~~l~lAGd~t~~~~~~smeGAv~SG~~AA~~I~~~~~~ 550 (567)
T PLN02612 503 -------PCRP-----LQRSPIEGFYLAGDYTKQKYLASMEGAVLSGKLCAQSIVQDYEL 550 (567)
T ss_pred -------ccCc-----cccCccCCEEEeecceeCCchhhHHHHHHHHHHHHHHHHHHhcc
Confidence 1466 5678999999999999764 577887 999999999998754
No 7
>PRK07233 hypothetical protein; Provisional
Probab=100.00 E-value=7.2e-31 Score=265.15 Aligned_cols=416 Identities=23% Similarity=0.348 Sum_probs=240.6
Q ss_pred cEEEECCChhHHHHHHHHHHcCCcEEEEccCCCCCceeecccccCCeeecccchhhhcchhhhhhc----Ccccccchhh
Q 048009 19 DALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAVTEELIPGFKFSRCSYLQSLLRPSLIKC----GTRIGETWNE 94 (531)
Q Consensus 19 dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~GG~~~s~~~~~g~~~d~g~~~~~~~~~~~~~~----gl~~~~~~~~ 94 (531)
+|+|||||++||+||+.|+++|++|+|+|+++++||++.+.. ..|+.+|.|.+++....+.+.+. |+.....+..
T Consensus 1 ~vvVIGaGiaGL~aA~~L~~~G~~v~vlE~~~~~GG~~~s~~-~~g~~~d~g~~~~~~~~~~~~~l~~~lg~~~~~~~~~ 79 (434)
T PRK07233 1 KIAIVGGGIAGLAAAYRLAKRGHEVTVFEADDQLGGLAASFE-FGGLPIERFYHHIFKSDEALLELLDELGLEDKLRWRE 79 (434)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEeCCCCCCceeeec-cCCcchhhhhhhhccccHHHHHHHHHcCCCCceeecc
Confidence 699999999999999999999999999999999999999876 66999999988765555555443 4421111100
Q ss_pred hcc--chhhhHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCcchhhhhhhhhhhhhHHHHHHHHHhcChhhHHHHHHHH
Q 048009 95 VVE--AKSIIVYAIFEDQLDKFSQFVDLLFDSSPPELLQGSSSYSHQFKNKIRNSAFWAHCLRRAISLGQKDLVEFVDLL 172 (531)
Q Consensus 95 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (531)
... ..+...++ +..... +..... ....++.+... .... ... .....+..
T Consensus 80 ~~~~~~~~~~~~~--------~~~~~~-~~~~~~-------~~~~~~~~~~~-------~~~~----~~~--~~~~~~~~ 130 (434)
T PRK07233 80 TKTGYYVDGKLYP--------LGTPLE-LLRFPH-------LSLIDKFRLGL-------LTLL----ARR--IKDWRALD 130 (434)
T ss_pred CceEEEECCeEec--------CCCHHH-HHcCCC-------CCHHHHHHhHH-------HHHh----hhh--cccccccc
Confidence 000 00000000 000000 000000 00001110000 0000 000 00011223
Q ss_pred hccHHHHhhcccCChhHHHHHhhh--hhhccCCCCCCCChHHHHHHHHhhcc----CCCCCccccccCchHHHHHHHHHH
Q 048009 173 LSPASKVLNKWFETDVLKATLATD--AVIGTMSSVHTPGSGYVLLHHVMGET----DGNPGIWSYVEGGMGSVSMAIGSA 246 (531)
Q Consensus 173 ~~~~~~~l~~~~~~~~l~~~~~~~--~~~g~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~gG~~~l~~~l~~~ 246 (531)
..++.+++.+.+.++..+.++... .+.+. .+........ +..+.... ......+.+++||++.++++|.+.
T Consensus 131 ~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~s~~~~-~~~~~~~~~~~~~~~~~~~~~~~gG~~~l~~~l~~~ 207 (434)
T PRK07233 131 KVPAEEWLRRWSGEGVYEVFWEPLLESKFGD--YADDVSAAWL-WSRIKRRGNRRYSLFGEKLGYLEGGFATLIDALAEA 207 (434)
T ss_pred cccHHHHHHHhcCHHHHHHHHHHHHhcccCC--CccccCHHHH-HHHHhhhhccccccCCceEeccCCCHHHHHHHHHHH
Confidence 466777777766555444444321 12221 2222222221 11111000 000112458999999999999999
Q ss_pred HHHcCcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChHhHHhhcCCCCCCChHHHHHhhccCCCCCeEEE
Q 048009 247 AREAGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYKTFMDLVPGNILPDDFILSIKHSDYSSGTTKI 326 (531)
Q Consensus 247 ~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~~~~~~ll~~~~~~~~~~~~i~~~~~~~~~~~~ 326 (531)
+++.|++|+++++|++|+.++ ++++.+. .+++++.||+||+|+++.. +.++++. +++...+.++++.+ .+.+++
T Consensus 208 l~~~g~~v~~~~~V~~i~~~~-~~~~~~~-~~~~~~~ad~vI~a~p~~~-~~~ll~~--~~~~~~~~~~~~~~-~~~~~~ 281 (434)
T PRK07233 208 IEARGGEIRLGTPVTSVVIDG-GGVTGVE-VDGEEEDFDAVISTAPPPI-LARLVPD--LPADVLARLRRIDY-QGVVCM 281 (434)
T ss_pred HHhcCceEEeCCCeeEEEEcC-CceEEEE-eCCceEECCEEEECCCHHH-HHhhcCC--CcHHHHhhhcccCc-cceEEE
Confidence 999999999999999999877 6665454 5666799999999988877 4677754 56666677777776 677888
Q ss_pred eeecCCCCccccccCCCCCCCCCcceEEEECCCCHHHHHHHHHHHHcCCCCCCCeEEEEeCCCCCCCCCCCCceEEEEEe
Q 048009 327 NLAVDKLPQFQCCKLSHPDPGPQHVGTIHIGSESMEEIHSACQEAVNGLPSRRPIIEMTIPSVLDKTISPPGNHVINLFI 406 (531)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~d~~~ap~G~~~l~~~~ 406 (531)
++.++++.. . + .++.+.. ++.++..+..++..+|+.+|+|++++.+.+
T Consensus 282 ~l~~~~~~~------------~-~-~~~~~~~------------------~~~~~~~~~~~s~~~~~~~~~g~~~~~~~~ 329 (434)
T PRK07233 282 VLKLRRPLT------------D-Y-YWLNIND------------------PGAPFGGVIEHTNLVPPERYGGEHLVYLPK 329 (434)
T ss_pred EEEecCCCC------------C-C-ceeeecC------------------CCCCcceEEEecccCCccccCCceEEEEee
Confidence 999987431 0 1 1122100 112233344556678888878887655432
Q ss_pred ccccCCCCCCCCCChHHHHHHHHHHHHHHHHhCCCCCC-ceeEEEecCcchHHHHhCCCCCcccccCCCccccccCCCCC
Q 048009 407 QYTPYKPSDGSWMDPAYRDSFANRCFSLIDEYAPGFSS-SIIGYDMLTPPDLEREIGLTGGNIFHGAMGLDSLFLMRPVK 485 (531)
Q Consensus 407 ~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~~~~P~~~~-~i~~~~~~tp~~~~~~~~~~~G~~~~~~~~~~~~~~~rp~~ 485 (531)
+.+.. ...|.. .++++.+.+++.|++++|+++. .++...+. .+. + . +..|.. . ....+|
T Consensus 330 -~~~~~--~~~~~~--~~~~~~~~~~~~L~~~~p~~~~~~~~~~~~~---r~~-~-a---~~~~~~--g---~~~~~~-- 389 (434)
T PRK07233 330 -YLPGD--HPLWQM--SDEELLDRFLSYLRKMFPDFDRDDVRAVRIS---RAP-Y-A---QPIYEP--G---YLDKIP-- 389 (434)
T ss_pred -ecCCC--ChhhcC--CHHHHHHHHHHHHHHhCCCCChhheeeEEEE---Eec-c-c---cccccC--c---hhhcCC--
Confidence 22211 112322 3589999999999999998853 33333321 111 1 0 111110 0 001333
Q ss_pred CCCCCCCCCCCeeecCCCCC--CCCCcCCc--hHHHHHHHHHHHhhh
Q 048009 486 GWSNYRTPLQGLYMCGSGTH--PGGGVMGA--PGRNAAGIVLQDLKK 528 (531)
Q Consensus 486 ~~~~~~t~~~~ly~aG~~~~--~g~g~~~~--sg~~aa~~i~~~~~~ 528 (531)
..+++++||||||++.. ++.++.+| ||+.||+.|++.+.+
T Consensus 390 ---~~~~~~~~l~~aG~~~~~~~~~~~~~Ai~sG~~aA~~i~~~~~~ 433 (434)
T PRK07233 390 ---PYDTPIEGLYLAGMSQIYPEDRSINGSVRAGRRVAREILEDRRN 433 (434)
T ss_pred ---CcccCcCCEEEeCCcccCCccCchhHHHHHHHHHHHHHhhhhcC
Confidence 45678899999999642 34578887 999999999998764
No 8
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=99.97 E-value=1.1e-29 Score=255.01 Aligned_cols=442 Identities=15% Similarity=0.154 Sum_probs=231.4
Q ss_pred cEEEECCChhHHHHHHHHHHcCCcEEEEccCCCCCceeecccccCCeeecccchhhhcchhhhhhc----Ccccccchhh
Q 048009 19 DALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAVTEELIPGFKFSRCSYLQSLLRPSLIKC----GTRIGETWNE 94 (531)
Q Consensus 19 dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~GG~~~s~~~~~g~~~d~g~~~~~~~~~~~~~~----gl~~~~~~~~ 94 (531)
+|+|||||++||+||+.|+++|++|+|+|+++.+||+++++....|+.+|.|.+++...++++++. |+...+....
T Consensus 1 ~v~IiG~G~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~~~~~~~g~~~d~G~~~~~~~~~~~~~~~~~lg~~~~~~~~~ 80 (474)
T TIGR02732 1 KVAIVGAGLAGLSTAVELVDAGHEVDIYESRSFIGGKVGSWVDGDGNHIEMGLHVFFGCYANLFRLMKKVGAEDNLLLKE 80 (474)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCCCceeeeeecCCCceEeeceEEecCchHHHHHHHHHcCCcccccccc
Confidence 589999999999999999999999999999999999999975457999999999877666665544 4432211110
Q ss_pred hc---cchhhhHHH-HHHHHH-HHHHHHHHHhhcCCCcccccCCCcchhhhhhhhhhhhhHHHHHHHHHhcC----hhhH
Q 048009 95 VV---EAKSIIVYA-IFEDQL-DKFSQFVDLLFDSSPPELLQGSSSYSHQFKNKIRNSAFWAHCLRRAISLG----QKDL 165 (531)
Q Consensus 95 ~~---~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~ 165 (531)
.. ...+..... .+.... .++ .....++... ...+.++++... .......... ....
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~P~-~~~~~~l~~~-------~ls~~dklr~~~-------~~~~~~~~~~~~~~~~~~ 145 (474)
T TIGR02732 81 HTHTFVNKGGDIGELDFRFATGAPF-NGLKAFFTTS-------QLKWVDKLRNAL-------ALGTSPIVRGLVDYDGAM 145 (474)
T ss_pred ceeEEEcCCCcccccccCCCCCCch-hhhHHHhcCC-------CCCHHHHHHHHH-------HhhhhHHHhhccccchhh
Confidence 00 000000000 000000 000 0000011000 011111111000 0000000000 0001
Q ss_pred HHHHHHHhccHHHHhhcccCChh-HHHHHhhhhhhcc-CCCCCCCChHHHHH-HHHhhccCCCCCccccccCchHH-HHH
Q 048009 166 VEFVDLLLSPASKVLNKWFETDV-LKATLATDAVIGT-MSSVHTPGSGYVLL-HHVMGETDGNPGIWSYVEGGMGS-VSM 241 (531)
Q Consensus 166 ~~~~~~~~~~~~~~l~~~~~~~~-l~~~~~~~~~~g~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~gG~~~-l~~ 241 (531)
..+......++.++++++..++. ++.++... +.+. ...+...++...+. .+.+.. ........+++||... +.+
T Consensus 146 ~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~Pl-l~~~~~~~~~~~Sa~~~~~~~~~~~~-~~~~s~~~~~~g~~~~~l~~ 223 (474)
T TIGR02732 146 KTIRDLDKISFAEWFLSHGGSLGSIKRMWDPI-AYALGFIDCENISARCMLTIFMLFAA-KTEASKLRMLKGSPDKYLTK 223 (474)
T ss_pred hhhhhhccccHHHHHHHcCCCHHHHHHHHHHH-HHHhcCCCHHHHHHHHHHHHHHHHHh-CCCcceeeeecCCcchhHHH
Confidence 22233456889999999888875 44444321 2221 11223222222211 112221 1222233477888766 677
Q ss_pred HHHHHHHHcCcEEEcCcceeEEEecC--CC--ceeEEEeCCC---cEEEcCeEEecCChHhHHhhcCCCCCCChHHHHHh
Q 048009 242 AIGSAAREAGAHIVTRAEVSQLMIND--SG--RVNGVQLADG---AQVHSSIVLSNATPYKTFMDLVPGNILPDDFILSI 314 (531)
Q Consensus 242 ~l~~~~~~~G~~i~~~~~V~~I~~~~--~g--~~~~V~~~~g---~~~~ad~VV~aa~~~~~~~~ll~~~~~~~~~~~~i 314 (531)
.+.+.++++|++|+++++|++|..++ ++ ++++|++.+| +++.||+||+|++++. +.+|+++..-.......+
T Consensus 224 pl~~~L~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~~v~~~~g~~~~~~~aD~VVlA~p~~~-~~~Ll~~~~~~~~~~~~l 302 (474)
T TIGR02732 224 PILEYIEARGGKFHLRHKVREIKYEKSSDGSTRVTGLIMSKPEGKKVIKADAYVAACDVPG-IKRLLPQEWRQFEEFDNI 302 (474)
T ss_pred HHHHHHHHCCCEEECCCEEEEEEEecCCCCceeEEEEEEecCCcceEEECCEEEECCChHH-HHhhCChhhhcCHHHhhH
Confidence 79999999999999999999998853 12 3777778654 4689999999999988 478887632122356677
Q ss_pred hccCCCCCeEEEeeecCCCCccccccCCCCCC-CCCcceEEEECCCCHHHHHHHHHHHHcCCCCCCCeEEEEeCCCCCC-
Q 048009 315 KHSDYSSGTTKINLAVDKLPQFQCCKLSHPDP-GPQHVGTIHIGSESMEEIHSACQEAVNGLPSRRPIIEMTIPSVLDK- 392 (531)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~d~- 392 (531)
..+.+ .++.++++.++++...+......+.. ......++.+..+ ..+.+...-+...+
T Consensus 303 ~~l~~-~pi~~v~l~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~ 362 (474)
T TIGR02732 303 YKLDA-VPVATVQLRYDGWVTELQDLAKRKQLKRAAGLDNLLYTAD-------------------ADFSCFADLALTSPD 362 (474)
T ss_pred hcCCC-CCeEEEEEEeccccccccchhhhhcccccccccccccccC-------------------ccceeeehhhccCHH
Confidence 77777 68899999998744321000000000 0000000000000 00001000001112
Q ss_pred CCCCCCceE-EEEEeccccCCCCCCCCCChHHHHHHHHHHHHHHHHhCCCCCCc-eeEEEecCcchHHHHhCCCCCcccc
Q 048009 393 TISPPGNHV-INLFIQYTPYKPSDGSWMDPAYRDSFANRCFSLIDEYAPGFSSS-IIGYDMLTPPDLEREIGLTGGNIFH 470 (531)
Q Consensus 393 ~~ap~G~~~-l~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~~~~P~~~~~-i~~~~~~tp~~~~~~~~~~~G~~~~ 470 (531)
.+.+.|... +.+.+... . ..+.. .++++.++++++|++++|.+++. ++...+ ..+. .++|.
T Consensus 363 ~~~~~~~~~~l~~~~~~~--~---~~~~~--~~~~l~~~~~~~L~~~~p~~~~~~~~~~~v---~~~~-------~a~~~ 425 (474)
T TIGR02732 363 DYYKEGQGSLLQCVLTPG--D---PWMPE--SNEEIAKRVDKQVRALFPSSKNLKLTWSSV---VKLA-------QSLYR 425 (474)
T ss_pred HHhccCCCeEEEEEEeCh--h---hhcCC--CHHHHHHHHHHHHHHhCccccCCceeEEEE---EEec-------Cceec
Confidence 123333332 33332111 0 01111 24899999999999999986543 221101 1111 11111
Q ss_pred cCCCccccccCCCCCCCCCCCCCCCCeeecCCCCCCC--CCcCCc--hHHHHHHHHH
Q 048009 471 GAMGLDSLFLMRPVKGWSNYRTPLQGLYMCGSGTHPG--GGVMGA--PGRNAAGIVL 523 (531)
Q Consensus 471 ~~~~~~~~~~~rp~~~~~~~~t~~~~ly~aG~~~~~g--~g~~~~--sg~~aa~~i~ 523 (531)
..+... ..|| ..+|+++|||+||||+.++ .++.+| ||+.||+.|+
T Consensus 426 ~~pg~~---~~~P-----~~~t~~~~l~lAGD~t~~~~pas~egAv~sG~~aA~~i~ 474 (474)
T TIGR02732 426 EAPGMD---PFRP-----DQKTPISNFFLAGSYTQQDYIDSMEGATLSGRQAAAAIL 474 (474)
T ss_pred cCCCCc---ccCC-----CCCCCCCCeEEeccccccCchHHHhHHHHHHHHHHHHhC
Confidence 111111 2466 7889999999999999653 244455 9999999874
No 9
>PLN02487 zeta-carotene desaturase
Probab=99.97 E-value=2.9e-29 Score=253.01 Aligned_cols=453 Identities=15% Similarity=0.157 Sum_probs=240.6
Q ss_pred CCCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCCCCceeecccccCCeeecccchhhhcchhhhhhc----Ccccccc
Q 048009 16 KKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAVTEELIPGFKFSRCSYLQSLLRPSLIKC----GTRIGET 91 (531)
Q Consensus 16 ~~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~GG~~~s~~~~~g~~~d~g~~~~~~~~~~~~~~----gl~~~~~ 91 (531)
+..+|+|||||++||++|+.|+++|++|+|+|+++.+||++.++....|+.+|.|.|++...++++++. |+...+.
T Consensus 74 ~~~~v~iiG~G~~Gl~~a~~L~~~g~~v~i~E~~~~~gG~~~s~~~~~g~~~e~G~h~~~~~~~~~~~ll~~LGl~~~~~ 153 (569)
T PLN02487 74 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRPFIGGKVGSFVDKNGNHIEMGLHVFFGCYNNLFRLMKKVGADENLL 153 (569)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhCCCeeEEEecCCCCCCceeeeeecCCcEEecceeEecCCcHHHHHHHHhcCCccccc
Confidence 457999999999999999999999999999999999999999876457999999999876666665544 5532221
Q ss_pred hhh-hccchh----hhHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCcchhhhhhhhhhhhhHHHHHHHHHhcCh-hhH
Q 048009 92 WNE-VVEAKS----IIVYAIFEDQLDKFSQFVDLLFDSSPPELLQGSSSYSHQFKNKIRNSAFWAHCLRRAISLGQ-KDL 165 (531)
Q Consensus 92 ~~~-~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 165 (531)
... +....+ ...+..... ..........++.... ..+.+++.....- +...... +. ... ..+
T Consensus 154 ~~~~~~~~~~~~g~~~~~~~~~p-~~~pl~~~~~~l~~~~-------Ls~~dklr~~~~l--~~~~~~~-al-~~~~~~~ 221 (569)
T PLN02487 154 VKDHTHTFVNKGGDVGELDFRFP-VGAPLHGIKAFLTTNQ-------LEPYDKARNALAL--ATSPVVR-AL-VDPDGAM 221 (569)
T ss_pred ccccceeEEecCCEEeeeccCCC-CCchhhhHHHHHcCCC-------CCHHHHHhhcccc--cccchhh-hc-cCccccc
Confidence 110 000000 000000000 0000011111111111 0011111100000 0000000 00 000 001
Q ss_pred HHHHHHHhccHHHHhhcccCCh-hHHHHHhhhhhhccCCCCCCCChHHHHHH-HHhhccCCCCCccccccCchHH-HHHH
Q 048009 166 VEFVDLLLSPASKVLNKWFETD-VLKATLATDAVIGTMSSVHTPGSGYVLLH-HVMGETDGNPGIWSYVEGGMGS-VSMA 242 (531)
Q Consensus 166 ~~~~~~~~~~~~~~l~~~~~~~-~l~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~gG~~~-l~~~ 242 (531)
..+......++.+|+.++..++ .+..++...........+...++.+.... .... .....+...+++||... |.+.
T Consensus 222 ~~~~~~d~~sv~~~l~r~~g~~~~~~~l~dPll~~~~~~~~d~~SA~~~~~vl~~~~-~~~~~~~l~~~~Gg~~~~l~~p 300 (569)
T PLN02487 222 RDIRDLDDISFSDWFTSHGGTRMSIKRMWDPIAYALGFIDCDNISARCMLTIFSLFA-TKTEASLLRMLKGSPDVRLSGP 300 (569)
T ss_pred cccccccCCcHHHHHHHhCCCHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHh-hcCCcceeeecCCCchHHHHHH
Confidence 1122334588899999888877 44445442222111122222222222111 1111 11222324489999995 9999
Q ss_pred HHHHHHHcCcEEEcCcceeEEEecC--CC--ceeEEEe---CCCcEEEcCeEEecCChHhHHhhcCCCCCCChHHHHHhh
Q 048009 243 IGSAAREAGAHIVTRAEVSQLMIND--SG--RVNGVQL---ADGAQVHSSIVLSNATPYKTFMDLVPGNILPDDFILSIK 315 (531)
Q Consensus 243 l~~~~~~~G~~i~~~~~V~~I~~~~--~g--~~~~V~~---~~g~~~~ad~VV~aa~~~~~~~~ll~~~~~~~~~~~~i~ 315 (531)
+++.++++|++|+++++|++|..+. ++ ++++|++ .+++++.+|.||+|++++. +.+|+++..-.......+.
T Consensus 301 l~~~L~~~Gg~V~l~~~V~~I~~~~~~~g~~~v~gv~~~~~~~~~~~~aD~VV~A~p~~~-~~~Llp~~~~~~~~~~~l~ 379 (569)
T PLN02487 301 IAKYITDRGGRFHLRWGCREILYDKSPDGETYVTGLKVSKATEKEIVKADAYVAACDVPG-IKRLLPEQWREYEFFDNIY 379 (569)
T ss_pred HHHHHHHcCCEEEeCCceEEEEEecCCCCceeEEEEEEecCCCceEEECCEEEECCCHHH-HHHhCCchhhccHHHhHHh
Confidence 9999999999999999999999873 13 3788888 3455789999999999987 5899977422223456777
Q ss_pred ccCCCCCeEEEeeecCCCCccccccCCCCCCCCCcceEEEECCCCHHHHHHHHHHHHcCCCCCCCeEE-EEeCCCCCCCC
Q 048009 316 HSDYSSGTTKINLAVDKLPQFQCCKLSHPDPGPQHVGTIHIGSESMEEIHSACQEAVNGLPSRRPIIE-MTIPSVLDKTI 394 (531)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~d~~~ 394 (531)
.+.+ ..++++++-++++...+......... ....| + +. +. + -+ ...-+++. +...+..+- +
T Consensus 380 ~L~~-~pi~tv~L~~d~~v~~~~~~~~~r~l-~~~~g---~--~~---~~--~----~~-~~~~~f~~di~l~~~~~~-~ 441 (569)
T PLN02487 380 KLVG-VPVVTVQLRYNGWVTEMQDLELSRQL-RRAAG---L--DN---LL--Y----SA-DADFSCFADLALTSPEDY-Y 441 (569)
T ss_pred cCCC-eeEEEEEEEecccccccccccccccc-ccccc---c--cc---cc--c----cc-CCCcceEeeeecCCHHHH-c
Confidence 7766 67889999998754321000000000 00000 0 00 00 0 00 00001100 110100000 1
Q ss_pred CCCCceEEEEEecc-ccCCCCCCCCCChHHHHHHHHHHHHHHHHhCCCCCCc-eeEEEecCcchHHHHhCCCCCcccccC
Q 048009 395 SPPGNHVINLFIQY-TPYKPSDGSWMDPAYRDSFANRCFSLIDEYAPGFSSS-IIGYDMLTPPDLEREIGLTGGNIFHGA 472 (531)
Q Consensus 395 ap~G~~~l~~~~~~-~~~~~~~~~~~~~~~k~~~~~~~~~~l~~~~P~~~~~-i~~~~~~tp~~~~~~~~~~~G~~~~~~ 472 (531)
.+...+.+.+++.. .++. .+. .++++++++++|.+++|.+++. +....+ ..+. .++|...
T Consensus 442 ~~~~g~~l~~vis~a~~~~----~~~----~~ei~~~~~~~L~~~~p~~~~~~v~~~~v---v~~~-------~at~~~~ 503 (569)
T PLN02487 442 KEGEGSLIQAVLTPGDPYM----PLS----NDKIVEKVHKQVLELFPSSRGLEVTWSSV---VKIG-------QSLYREA 503 (569)
T ss_pred ccCCceEEEEEEcCCcccc----CCC----HHHHHHHHHHHHHHhCcccccCceEEEEE---EEcc-------CceeccC
Confidence 11112344444321 1111 223 4899999999999999987653 332111 1111 1112111
Q ss_pred CCccccccCCCCCCCCCCCCCCCCeeecCCCCCCC--CCcCCc--hHHHHHHHHHHHh
Q 048009 473 MGLDSLFLMRPVKGWSNYRTPLQGLYMCGSGTHPG--GGVMGA--PGRNAAGIVLQDL 526 (531)
Q Consensus 473 ~~~~~~~~~rp~~~~~~~~t~~~~ly~aG~~~~~g--~g~~~~--sg~~aa~~i~~~~ 526 (531)
+... ..|| ..+|+++|||+|||||.++ ..+.+| ||..||+.|++..
T Consensus 504 pg~~---~~RP-----~~~T~~~nl~LAGD~t~~~yPat~EgAv~SG~~AA~~i~~~~ 553 (569)
T PLN02487 504 PGMD---PFRP-----DQKTPISNFFLAGSYTKQDYIDSMEGATLSGRQAAAYICEAG 553 (569)
T ss_pred CCcc---ccCC-----CCCCCCCCEEEeCcccccCCcchHHHHHHHHHHHHHHHHHHh
Confidence 1111 2567 7899999999999999654 233455 9999999998864
No 10
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=99.97 E-value=2.3e-29 Score=254.24 Aligned_cols=421 Identities=17% Similarity=0.233 Sum_probs=230.6
Q ss_pred cEEEECCChhHHHHHHHHHHcCCcEEEEccCCCCCceeecccccCCeeecccchhhhcchhhhhhc----Ccccccchhh
Q 048009 19 DALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAVTEELIPGFKFSRCSYLQSLLRPSLIKC----GTRIGETWNE 94 (531)
Q Consensus 19 dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~GG~~~s~~~~~g~~~d~g~~~~~~~~~~~~~~----gl~~~~~~~~ 94 (531)
+|+|||||++||+||++|+++|++|+|+|+++++||++.+.....|+.+|.|.+++....|++++. |+.....+..
T Consensus 1 ~v~IiGaG~aGl~aA~~L~~~G~~v~vlE~~~~~GG~~~s~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lg~~~~~~~~~ 80 (453)
T TIGR02731 1 RVAIAGAGLAGLSCAKYLADAGHTPIVLEARDVLGGKVAAWKDEDGDWYETGLHIFFGAYPNMLQLLKELNIEDRLQWKS 80 (453)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCcceeECCCCCEEEcCcceeccCCchHHHHHHHcCCccceeecC
Confidence 599999999999999999999999999999999999998875457899999998876666766553 5432211100
Q ss_pred hc---cchh-hhHHH--HHHHHHHHHHHHHHHhhcCCCcccccCCCcchhhhhhhhhhhhhHHHHHHHHHhcChhhHHHH
Q 048009 95 VV---EAKS-IIVYA--IFEDQLDKFSQFVDLLFDSSPPELLQGSSSYSHQFKNKIRNSAFWAHCLRRAISLGQKDLVEF 168 (531)
Q Consensus 95 ~~---~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (531)
.. ...+ ...+. .+......+ .....++.... ...+.++.. +..... ..... .....
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~------~~~~~~~~~-------~~~~~~-~~~~~---~~~~~ 142 (453)
T TIGR02731 81 HSMIFNQPDKPGTFSRFDFPDIPAPF-NGVAAILRNND------MLTWPEKIK-------FAIGLL-PAIVR---GQKYV 142 (453)
T ss_pred CceEEecCCCCcceeeccCCCCCCCH-HHHHHHhcCcC------CCCHHHHHH-------HHHHhH-HHHhc---Cccch
Confidence 00 0000 00000 000000000 00000000000 000011100 000000 00000 00112
Q ss_pred HHHHhccHHHHhhcccCChhHHH-HHhh--hhhhccCCCCCCCChHHHH--HHHHhhccCCCCCc-cccccCc-hHHHHH
Q 048009 169 VDLLLSPASKVLNKWFETDVLKA-TLAT--DAVIGTMSSVHTPGSGYVL--LHHVMGETDGNPGI-WSYVEGG-MGSVSM 241 (531)
Q Consensus 169 ~~~~~~~~~~~l~~~~~~~~l~~-~~~~--~~~~g~~~~~~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~gG-~~~l~~ 241 (531)
..+...++.+|+.+....+.+.. ++.. .++.+ ..+...+..+.+ +...+. ...+. ..+..|+ ++.+++
T Consensus 143 ~~~~~~s~~~~l~~~~~~~~~~~~~~~pl~~~~~~--~~p~~~S~~~~~~~l~~~~~---~~~g~~~~~~~g~~~~~l~~ 217 (453)
T TIGR02731 143 EEQDKYTVTEWLRKQGVPERVNDEVFIAMSKALNF--INPDELSMTVVLTALNRFLQ---ERHGSKMAFLDGAPPERLCQ 217 (453)
T ss_pred hhhccCCHHHHHHHcCCCHHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHHHHHh---cCCCCeeEeecCCChHHHHH
Confidence 23356788888887555555443 3221 11111 122222222211 111111 11111 1133443 467999
Q ss_pred HHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCCCc-----EEEcCeEEecCChHhHHhhcCCCCCCChHHHHHhhc
Q 048009 242 AIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADGA-----QVHSSIVLSNATPYKTFMDLVPGNILPDDFILSIKH 316 (531)
Q Consensus 242 ~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~-----~~~ad~VV~aa~~~~~~~~ll~~~~~~~~~~~~i~~ 316 (531)
.|.+.++++|++|++|++|++|..++++++++|++.+|+ ++.||.||+|+++.. +.+|++...-.....+.+..
T Consensus 218 ~l~~~l~~~g~~i~l~~~V~~I~~~~~~~v~~v~~~~~~~~~~~~~~a~~VI~a~p~~~-~~~lL~~~~~~~~~~~~~~~ 296 (453)
T TIGR02731 218 PIVDYITSRGGEVRLNSRLKEIVLNEDGSVKHFVLADGEGQRRFEVTADAYVSAMPVDI-FKLLLPQPWKQMPFFQKLNG 296 (453)
T ss_pred HHHHHHHhcCCEEeCCCeeEEEEECCCCCEEEEEEecCCCCceeEEECCEEEEcCCHHH-HHhhCchhhhcCHHHHHhhc
Confidence 999999999999999999999987554778889887765 789999999998876 67888653212345666777
Q ss_pred cCCCCCeEEEeeecCCCCccccccCCCCCCCCCcceEEEECCCCHHHHHHHHHHHHcCCCCCCCeEEEEeCCCCCCCCCC
Q 048009 317 SDYSSGTTKINLAVDKLPQFQCCKLSHPDPGPQHVGTIHIGSESMEEIHSACQEAVNGLPSRRPIIEMTIPSVLDKTISP 396 (531)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~d~~~ap 396 (531)
+++ .+++++++.++++... +. +.++. .+.. ......+.+.. ...++
T Consensus 297 ~~~-~~~~~v~l~~~~~~~~-----------~~--~~~~~-~~~~------------------~~~~~~~s~~~-~~~~~ 342 (453)
T TIGR02731 297 LEG-VPVINVHIWFDRKLTT-----------VD--HLLFS-RSPL------------------LSVYADMSETC-KEYAD 342 (453)
T ss_pred CCC-CcEEEEEEEEccccCC-----------CC--ceeee-CCCc------------------ceeecchhhhC-hhhcC
Confidence 765 6889999999885311 01 12221 1110 00000011111 12334
Q ss_pred CCceEEEEEeccccCCCCCCCCCChHHHHHHHHHHHHHHHHhCCCC------CCceeEEEecCcchHHHHhCCCCCcccc
Q 048009 397 PGNHVINLFIQYTPYKPSDGSWMDPAYRDSFANRCFSLIDEYAPGF------SSSIIGYDMLTPPDLEREIGLTGGNIFH 470 (531)
Q Consensus 397 ~G~~~l~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~~~~P~~------~~~i~~~~~~tp~~~~~~~~~~~G~~~~ 470 (531)
++++++.+.+. ... .|.. ..+|++.+.++++|++++|+. .+.+.+.++..|.+. +...+ |
T Consensus 343 ~~~~l~~~~~~--~~~----~~~~-~~~ee~~~~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~p~a~--~~~~p-g---- 408 (453)
T TIGR02731 343 PDKSMLELVFA--PAA----DWIG-RSDEEIIDATMAELAKLFPNHIKADSPAKILKYKVVKTPRSV--YKTTP-G---- 408 (453)
T ss_pred CCCeEEEEEec--Chh----hhhc-CCHHHHHHHHHHHHHHhCCcccCCCCCceEEEEEEEECCCce--eccCC-C----
Confidence 55666665432 111 2211 135899999999999999852 123445556666552 21111 1
Q ss_pred cCCCccccccCCCCCCCCCCCCCCCCeeecCCCCCCC--CCcCCc--hHHHHHHHHH
Q 048009 471 GAMGLDSLFLMRPVKGWSNYRTPLQGLYMCGSGTHPG--GGVMGA--PGRNAAGIVL 523 (531)
Q Consensus 471 ~~~~~~~~~~~rp~~~~~~~~t~~~~ly~aG~~~~~g--~g~~~~--sg~~aa~~i~ 523 (531)
. ...+| ..++|++||||||+++..+ +++.+| ||+.||+.|+
T Consensus 409 ------~-~~~~~-----~~~~p~~~l~~AG~~~a~~~~g~~egAi~SG~~AA~~v~ 453 (453)
T TIGR02731 409 ------R-QQYRP-----HQKTPIPNFFLAGDYTKQKYLASMEGAVLSGKLCAQAIV 453 (453)
T ss_pred ------C-hhhCc-----cccCccCCEEEeehhccCcccccHHHHHHHHHHHHHHhC
Confidence 0 01333 5678899999999999432 367787 9999999875
No 11
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=99.97 E-value=2.3e-28 Score=247.97 Aligned_cols=418 Identities=15% Similarity=0.170 Sum_probs=225.4
Q ss_pred CcEEEECCChhHHHHHHHHHHcC--CcEEEEccCCCCCceeecccccCCeeecccchhhhcchhhhhhc----Ccccccc
Q 048009 18 WDALVIGGGHNGLTAAAYLARAG--LSVAVLERRHVIGGAAVTEELIPGFKFSRCSYLQSLLRPSLIKC----GTRIGET 91 (531)
Q Consensus 18 ~dvvIIGaGiaGL~aA~~L~~~G--~~V~v~E~~~~~GG~~~s~~~~~g~~~d~g~~~~~~~~~~~~~~----gl~~~~~ 91 (531)
.+|+|||||++||+||+.|+++| ++|+|+|+++++||++++.. ..|+.+|.|++++....+.+++. |+.....
T Consensus 1 ~~v~IVGaGiaGL~aA~~L~~~G~~~~V~vlEa~~~~GGr~~t~~-~~g~~~d~G~~~~~~~~~~~~~l~~~lgl~~~~~ 79 (451)
T PRK11883 1 KKVAIIGGGITGLSAAYRLHKKGPDADITLLEASDRLGGKIQTVR-KDGFPIELGPESFLARKPSAPALVKELGLEDELV 79 (451)
T ss_pred CeEEEECCCHHHHHHHHHHHHhCCCCCEEEEEcCCCCcceEEEEe-eCCeEEecChHHhcCCcHHHHHHHHHcCCcccee
Confidence 47999999999999999999988 89999999999999999986 67999999998655555544433 4421110
Q ss_pred hhh-----hccchhhhHHHHHHHHHHHHHHHHHHhhcCCCcccccC-CCcchhhhhhhhhhhhhHHHHHHHHHhcChhhH
Q 048009 92 WNE-----VVEAKSIIVYAIFEDQLDKFSQFVDLLFDSSPPELLQG-SSSYSHQFKNKIRNSAFWAHCLRRAISLGQKDL 165 (531)
Q Consensus 92 ~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (531)
... +........++. . .+ ...+...... ...++.. ...+........
T Consensus 80 ~~~~~~~~~~~~g~~~~~p~--~----------~~-~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~--- 132 (451)
T PRK11883 80 ANTTGQSYIYVNGKLHPIPP--G----------TV-MGIPTSIAPFLFAGLVSP-----------IGKLRAAADLRP--- 132 (451)
T ss_pred cCCCCcceEEECCeEEECCC--C----------Ce-eccCCCchhhhcCCCCCH-----------HHHHHhhCcccC---
Confidence 000 000000000000 0 00 0000000000 0000000 000000000000
Q ss_pred HHHHHHHhccHHHHhhcccCChhHHHHHhhhhhhccCC-CCCCCChHHHH---H----------HHHhhcc-C---CCCC
Q 048009 166 VEFVDLLLSPASKVLNKWFETDVLKATLATDAVIGTMS-SVHTPGSGYVL---L----------HHVMGET-D---GNPG 227 (531)
Q Consensus 166 ~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~g~~~-~~~~~~~~~~~---~----------~~~~~~~-~---~~~~ 227 (531)
.........++.+++.+.+.....+.++... +.+.+. .+........+ . ..+.... . ....
T Consensus 133 ~~~~~~~~~s~~e~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (451)
T PRK11883 133 PRWKPGQDQSVGAFFRRRFGDEVVENLIEPL-LSGIYAGDIDTLSLRATFPQLAQAEDKYGSLLRGMRKALPKEKKKTKG 211 (451)
T ss_pred CCCCCCCCcCHHHHHHHhccHHHHHHHHHHh-hceeecCChHHccHHHhHHHHHHHHHhcCcHHHHHHhhccccCCCCCC
Confidence 0000012345666666555544444433311 111111 11111111110 0 0000000 0 1123
Q ss_pred ccccccCchHHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChHhHHhhcCCCCCCC
Q 048009 228 IWSYVEGGMGSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYKTFMDLVPGNILP 307 (531)
Q Consensus 228 ~~~~~~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~~~~~~ll~~~~~~ 307 (531)
.|.+++||++.+++.|.+.+.+. +|+++++|++|..++ +.+ .|++.+|+++.||+||+|+++..+ .+++.+
T Consensus 212 ~~~~~~~G~~~l~~~l~~~l~~~--~i~~~~~V~~i~~~~-~~~-~v~~~~g~~~~~d~vI~a~p~~~~-~~l~~~---- 282 (451)
T PRK11883 212 VFGTLKGGLQSLIEALEEKLPAG--TIHKGTPVTKIDKSG-DGY-EIVLSNGGEIEADAVIVAVPHPVL-PSLFVA---- 282 (451)
T ss_pred ceEeeccHHHHHHHHHHHhCcCC--eEEeCCEEEEEEEcC-CeE-EEEECCCCEEEcCEEEECCCHHHH-HHhccC----
Confidence 45578999999999998877543 899999999999876 544 478888988999999999888874 666543
Q ss_pred hHHHHHhhccCCCCCeEEEeeecCCCCccccccCCCCCCCCCcceEEEECCCCHHHHHHHHHHHHcCCCCCCCeEEEEeC
Q 048009 308 DDFILSIKHSDYSSGTTKINLAVDKLPQFQCCKLSHPDPGPQHVGTIHIGSESMEEIHSACQEAVNGLPSRRPIIEMTIP 387 (531)
Q Consensus 308 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (531)
+...+.++++++ .++.++++.++++... .+... .+++..+. +.++..+.++
T Consensus 283 ~~~~~~~~~~~~-~~~~~v~l~~~~~~~~----------~~~~~-~~~~~~~~-----------------~~~~~~~~~~ 333 (451)
T PRK11883 283 PPAFALFKTIPS-TSVATVALAFPESATN----------LPDGT-GFLVARNS-----------------DYTITACTWT 333 (451)
T ss_pred hhHHHHHhCCCC-CceEEEEEEeccccCC----------CCCce-EEEecCCC-----------------CCcEEEEEeE
Confidence 334567778877 5677999999875211 01111 23332111 1233456567
Q ss_pred CCCCCCCCCCCceEEEEEeccccCCCCCCCCCChHHHHHHHHHHHHHHHHhCCCCCCceeEEEecCcchHHHHhCCCCCc
Q 048009 388 SVLDKTISPPGNHVINLFIQYTPYKPSDGSWMDPAYRDSFANRCFSLIDEYAPGFSSSIIGYDMLTPPDLEREIGLTGGN 467 (531)
Q Consensus 388 s~~d~~~ap~G~~~l~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~~~~P~~~~~i~~~~~~tp~~~~~~~~~~~G~ 467 (531)
+..+|..+|+|+.++.++.. .+.......|+ ++++.+.+++.|+++++ +........+. +|.. ..+
T Consensus 334 s~~~~~~~p~g~~~~~~~~~-~~~~~~~~~~~----~~~~~~~~~~~L~~~~g-~~~~~~~~~~~---rw~~--a~p--- 399 (451)
T PRK11883 334 SKKWPHTTPEGKVLLRLYVG-RPGDEAVVDAT----DEELVAFVLADLSKVMG-ITGDPEFTIVQ---RWKE--AMP--- 399 (451)
T ss_pred cCcCCCCCCCCcEEEEEecC-CCCCchhccCC----HHHHHHHHHHHHHHHhC-CCCCceEEEEe---ecCc--cCC---
Confidence 77778888988877666532 22111111232 48899999999999874 33222222221 1221 111
Q ss_pred ccccCCCccccccCCCCCCCCCCCCCCCCeeecCCCCCCCCCcCCc--hHHHHHHHHHH
Q 048009 468 IFHGAMGLDSLFLMRPVKGWSNYRTPLQGLYMCGSGTHPGGGVMGA--PGRNAAGIVLQ 524 (531)
Q Consensus 468 ~~~~~~~~~~~~~~rp~~~~~~~~t~~~~ly~aG~~~~~g~g~~~~--sg~~aa~~i~~ 524 (531)
.|+... ..+...+++ .... ++|||+||+|+. |.|++++ ||+.+|++|+.
T Consensus 400 ~~~~~~-~~~~~~l~~-----~l~~-~~~l~~aG~~~~-g~~i~~av~sg~~~a~~i~~ 450 (451)
T PRK11883 400 QYGVGH-IERVAELRA-----GLPH-YPGLYVAGASFE-GVGLPDCIAQAKRAAARLLA 450 (451)
T ss_pred CCCccH-HHHHHHHHH-----hhhh-CCCEEEECcccC-CccHHHHHHHHHHHHHHHHh
Confidence 111111 011111122 1122 679999999986 7789988 99999999975
No 12
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=99.96 E-value=2.6e-27 Score=228.44 Aligned_cols=416 Identities=18% Similarity=0.247 Sum_probs=232.8
Q ss_pred CcEEEECCChhHHHHHHHHHHcC--CcEEEEccCCCCCceeecccccCCeeecccchhhhcchhhhhhc----Ccccccc
Q 048009 18 WDALVIGGGHNGLTAAAYLARAG--LSVAVLERRHVIGGAAVTEELIPGFKFSRCSYLQSLLRPSLIKC----GTRIGET 91 (531)
Q Consensus 18 ~dvvIIGaGiaGL~aA~~L~~~G--~~V~v~E~~~~~GG~~~s~~~~~g~~~d~g~~~~~~~~~~~~~~----gl~~~~~ 91 (531)
.+|+|||||++||+||++|+|++ .+|+|||+++++||.+.|.. .+||.||.|++.+....+.+++. |++..+.
T Consensus 1 ~~i~IiG~GiaGLsaAy~L~k~~p~~~i~lfE~~~r~GG~l~T~~-~~G~~~e~G~~~f~~~~~~~l~li~eLGled~l~ 79 (444)
T COG1232 1 MKIAIIGGGIAGLSAAYRLQKAGPDVEVTLFEADDRVGGLLRTVK-IDGFLFERGPHHFLARKEEILDLIKELGLEDKLL 79 (444)
T ss_pred CeEEEECCcHHHHHHHHHHHHhCCCCcEEEEecCCCCCceEEEEe-eCCEEEeechhheecchHHHHHHHHHhCcHHhhc
Confidence 47999999999999999999999 99999999999999999985 89999999998765544444443 5532222
Q ss_pred hhhhccchhhhHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCcchhhhhhhhhhhhhHHHHHHHHHhcChhhHHHHHHH
Q 048009 92 WNEVVEAKSIIVYAIFEDQLDKFSQFVDLLFDSSPPELLQGSSSYSHQFKNKIRNSAFWAHCLRRAISLGQKDLVEFVDL 171 (531)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (531)
+.... ..|..+.+.+.++ +...+...-.... . ...-....+....... .....
T Consensus 80 ~~~~~-----~~~i~~~gkl~p~-----------P~~~i~~ip~~~~-~-----~~~~~~~~~~~~~~~~-----~~~~~ 132 (444)
T COG1232 80 WNSTA-----RKYIYYDGKLHPI-----------PTPTILGIPLLLL-S-----SEAGLARALQEFIRPK-----SWEPK 132 (444)
T ss_pred cCCcc-----cceEeeCCcEEEC-----------CccceeecCCccc-c-----chhHHHHHHHhhhccc-----CCCCC
Confidence 11000 0000000000000 0000000000000 0 0000000000000000 00001
Q ss_pred HhccHHHHhhcccCChhHHHHHhh--hhhhccCCCCCCCChH------------HH-HHHHHhhc-c---CCCCCccccc
Q 048009 172 LLSPASKVLNKWFETDVLKATLAT--DAVIGTMSSVHTPGSG------------YV-LLHHVMGE-T---DGNPGIWSYV 232 (531)
Q Consensus 172 ~~~~~~~~l~~~~~~~~l~~~~~~--~~~~g~~~~~~~~~~~------------~~-~~~~~~~~-~---~~~~~~~~~~ 232 (531)
...++.+|+.++|.++.+..++.. .++.+. ..+..+.. +. ++...... . ....+.+.++
T Consensus 133 ~d~sv~~f~r~~fG~ev~~~~~~pll~giy~~--~~~~LS~~~~~p~~~~~e~~~~s~~~g~~~~~~~~~~~~~~~~~~~ 210 (444)
T COG1232 133 QDISVGEFIRRRFGEEVVERFIEPLLEGIYAG--DADKLSAAAAFPILARAERKYGSLLRGAKKEGLPKQSLKKEKFGYL 210 (444)
T ss_pred CCcCHHHHHHHHHhHHHHHHHHHHHhhchhcC--CHHHhhHHHhcchhhhhhhhhcchhhhhhhccCccccccccccccc
Confidence 223455555555555544443331 111111 00000000 00 00000000 0 0112456688
Q ss_pred cCchHHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChHhHHhhcCCCCCCChHHHH
Q 048009 233 EGGMGSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYKTFMDLVPGNILPDDFIL 312 (531)
Q Consensus 233 ~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~~~~~~ll~~~~~~~~~~~ 312 (531)
+||+++|.+++++.++.. |+++++|++|..+. .. ..+...+|.++.||.||+|+.++. +..++++ ....+
T Consensus 211 ~gG~~~l~~al~~~l~~~---i~~~~~V~~i~~~~-~~-~~~~~~~g~~~~~D~VI~t~p~~~-l~~ll~~----~~~~~ 280 (444)
T COG1232 211 RGGLQSLIEALAEKLEAK---IRTGTEVTKIDKKG-AG-KTIVDVGGEKITADGVISTAPLPE-LARLLGD----EAVSK 280 (444)
T ss_pred CccHHHHHHHHHHHhhhc---eeecceeeEEEEcC-Cc-cEEEEcCCceEEcceEEEcCCHHH-HHHHcCC----cchhh
Confidence 999999999999988765 99999999999985 33 346778888899999999887777 5888876 22344
Q ss_pred HhhccCCCCCeEEEeeecCCCCccccccCCCCCCCCCcceEEEECCCCHHHHHHHHHHHHcCCCCCCCeEEEEeCCCCCC
Q 048009 313 SIKHSDYSSGTTKINLAVDKLPQFQCCKLSHPDPGPQHVGTIHIGSESMEEIHSACQEAVNGLPSRRPIIEMTIPSVLDK 392 (531)
Q Consensus 313 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~d~ 392 (531)
.+.++.+ .++.++.+++++.... ..++.. .+.+.++. .....++++|++.|
T Consensus 281 ~~~~~~~-~s~~~vv~~~~~~~~~---------~~~~~~-g~~iad~~------------------~~~~a~~~~S~~~p 331 (444)
T COG1232 281 AAKELQY-TSVVTVVVGLDEKDNP---------ALPDGY-GLLIADDD------------------PYILAITFHSNKWP 331 (444)
T ss_pred hhhhccc-cceEEEEEEecccccc---------CCCCce-EEEEecCC------------------CcceeEEEecccCC
Confidence 5566666 5667777778774211 112332 33442221 11456889999999
Q ss_pred CCCCCCceEEEEEeccccCCCCCCCCCChHHHHHHHHHHHHHHHHhCCCCCCceeEEEecCcchHHHHhCCCCCcccccC
Q 048009 393 TISPPGNHVINLFIQYTPYKPSDGSWMDPAYRDSFANRCFSLIDEYAPGFSSSIIGYDMLTPPDLEREIGLTGGNIFHGA 472 (531)
Q Consensus 393 ~~ap~G~~~l~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~~~~P~~~~~i~~~~~~tp~~~~~~~~~~~G~~~~~~ 472 (531)
...|+|++++++... .+.. .|......|++.+.+++.|.++++...+.+ ...+. .| ....|+..+ .
T Consensus 332 ~~~p~g~~ll~~~~~-~~g~----~~~~~~~dee~~~~~l~~L~~~~~~~~~~~-~~~v~---r~--~~~~PqY~v---G 397 (444)
T COG1232 332 HEAPEGKTLLRVEFG-GPGD----ESVSTMSDEELVAAVLDDLKKLGGINGDPV-FVEVT---RW--KYAMPQYEV---G 397 (444)
T ss_pred CCCCCCcEEEEEEee-cCCC----cchhccCHHHHHHHHHHHHHHHcCcCcchh-heeee---ec--cccCCccch---h
Confidence 999999999998763 3322 222222348999999999999998655433 11110 11 123444322 2
Q ss_pred CCccccccCCCCCCCCCCCCCCCCeeecCCCCCCCCCcCCc--hHHHHHHHHH
Q 048009 473 MGLDSLFLMRPVKGWSNYRTPLQGLYMCGSGTHPGGGVMGA--PGRNAAGIVL 523 (531)
Q Consensus 473 ~~~~~~~~~rp~~~~~~~~t~~~~ly~aG~~~~~g~g~~~~--sg~~aa~~i~ 523 (531)
+. +.....|. ...+-.+|++.+|.|-- |.|++.| +|..||++++
T Consensus 398 ~~-~~~~~ir~-----~l~~~y~gi~~~G~~~~-g~g~~d~I~~g~~aa~~l~ 443 (444)
T COG1232 398 HL-DRLEPIRA-----ALKGAYPGIKSVGRYGE-GVGLPDCIAAGKEAAEQLL 443 (444)
T ss_pred HH-HHHHHHHH-----hhccccCCeEEeccCCC-CCCchHHHHHHHHHHHHhh
Confidence 11 11111222 22223479999999984 4689887 8999999875
No 13
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=99.96 E-value=3e-27 Score=240.04 Aligned_cols=419 Identities=15% Similarity=0.164 Sum_probs=232.3
Q ss_pred CCcEEEECCChhHHHHHHHHHHc----CCcEEEEccCCCCCceeecccccCCeeecccchhhhcchhhhhhc----Cccc
Q 048009 17 KWDALVIGGGHNGLTAAAYLARA----GLSVAVLERRHVIGGAAVTEELIPGFKFSRCSYLQSLLRPSLIKC----GTRI 88 (531)
Q Consensus 17 ~~dvvIIGaGiaGL~aA~~L~~~----G~~V~v~E~~~~~GG~~~s~~~~~g~~~d~g~~~~~~~~~~~~~~----gl~~ 88 (531)
+.||+|||||++||+||++|+++ |++|+|+|+++++||++++.. ..|+.+|.|++++....+.+++. |+..
T Consensus 2 ~~~v~VIGaGiaGL~aA~~L~~~~~~~g~~v~vlE~~~r~GG~~~t~~-~~g~~~e~G~~~~~~~~~~~~~l~~~lgl~~ 80 (462)
T TIGR00562 2 KKHVVIIGGGISGLCAAYYLEKEIPELPVELTLVEASDRVGGKIQTVK-EDGYLIERGPDSFLERKKSAPDLVKDLGLEH 80 (462)
T ss_pred CceEEEECCCHHHHHHHHHHHhcCCCCCCcEEEEEcCCcCcceEEEEe-eCCEEEecCccccccCChHHHHHHHHcCCCc
Confidence 47999999999999999999999 999999999999999999986 67999999998877766665544 5432
Q ss_pred ccchhhh--c--cchhhhHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCcchhhhhhhhhhhhhHHHHHHHHHhcChhh
Q 048009 89 GETWNEV--V--EAKSIIVYAIFEDQLDKFSQFVDLLFDSSPPELLQGSSSYSHQFKNKIRNSAFWAHCLRRAISLGQKD 164 (531)
Q Consensus 89 ~~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (531)
....... . .......+ ++......++... ...+.++....+ . ......
T Consensus 81 ~~~~~~~~~~~~~~~~g~~~--------~~p~~~~~~~~~~-------~~~~~~~~~~~~-------~----~~~~~~-- 132 (462)
T TIGR00562 81 VLVSDATGQRYVLVNRGKLM--------PVPTKIAPFVKTG-------LFSLGGKLRAGM-------D----FIRPAS-- 132 (462)
T ss_pred ccccCCCCceEEEECCCcee--------cCCCChHHHhcCC-------CCCchhhHHhhh-------h----hccCCC--
Confidence 1110000 0 00000000 0000000000000 000000000000 0 000000
Q ss_pred HHHHHHHHhccHHHHhhcccCChhHHHHHhhhhhhccCC-CCCCCChHHHH-------------HHHHhhc---------
Q 048009 165 LVEFVDLLLSPASKVLNKWFETDVLKATLATDAVIGTMS-SVHTPGSGYVL-------------LHHVMGE--------- 221 (531)
Q Consensus 165 ~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~g~~~-~~~~~~~~~~~-------------~~~~~~~--------- 221 (531)
.....++.+++.+.+..+....++... +.+.+. .+........+ +..+...
T Consensus 133 -----~~~d~s~~e~l~~~~g~~~~~~~~~p~-~~~~~~~~~~~ls~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~ 206 (462)
T TIGR00562 133 -----PGKDESVEEFVRRRFGDEVVENLIEPL-LSGIYAGDPSKLSLKSTFPKFYQTEQKHGSLILGMKKTRNLPQGSGL 206 (462)
T ss_pred -----CCCCcCHHHHHHHhcCHHHHHHHHHHH-hcccccCCHHHhhHHHHhHHHHHHHHhcCcHHHHHHhhcccCccccc
Confidence 001245555555555443333332210 001000 01111111000 0000000
Q ss_pred --cCCCCCc-cccccCchHHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChHhHHh
Q 048009 222 --TDGNPGI-WSYVEGGMGSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYKTFM 298 (531)
Q Consensus 222 --~~~~~~~-~~~~~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~~~~~ 298 (531)
.....+. +..+.||++.|++.+++.+.. ++|+++++|++|..++ +++ .|++++|+++.||+||+|+++.. +.
T Consensus 207 ~~~~~~~~~~~~~~~gG~~~l~~~l~~~l~~--~~i~~~~~V~~I~~~~-~~~-~v~~~~g~~~~ad~VI~t~P~~~-~~ 281 (462)
T TIGR00562 207 QLTAKKQGQDFQTLATGLETLPEEIEKRLKL--TKVYKGTKVTKLSHRG-SNY-TLELDNGVTVETDSVVVTAPHKA-AA 281 (462)
T ss_pred cccccccCCceEecchhHHHHHHHHHHHhcc--CeEEcCCeEEEEEecC-CcE-EEEECCCcEEEcCEEEECCCHHH-HH
Confidence 0001121 447899999999999988752 7899999999999876 554 47888888899999999888887 47
Q ss_pred hcCCCCCCChHHHHHhhccCCCCCeEEEeeecCCCCccccccCCCCCCCCCcceEEEECCCCHHHHHHHHHHHHcCCCCC
Q 048009 299 DLVPGNILPDDFILSIKHSDYSSGTTKINLAVDKLPQFQCCKLSHPDPGPQHVGTIHIGSESMEEIHSACQEAVNGLPSR 378 (531)
Q Consensus 299 ~ll~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (531)
.|+++ +++...+.+.+++| .++.++.+.++++. + +..+.. ..++.+.. ..
T Consensus 282 ~ll~~--~~~~~~~~l~~l~~-~~~~~v~l~~~~~~-~--------~~~~~~--~g~l~~~~----------------~~ 331 (462)
T TIGR00562 282 GLLSE--LSNSASSHLDKIHS-PPVANVNLGFPEGS-V--------DGELEG--FGFLISRS----------------SK 331 (462)
T ss_pred HHhcc--cCHHHHHHHhcCCC-CceEEEEEEEchHH-c--------CCCCCc--eEEEccCC----------------CC
Confidence 88765 67778888998988 67888889887532 1 000112 22331110 01
Q ss_pred CCeEEEEeCCCCCCCCCCCCceEEEEEeccccCCCCCCCCCChHHHHHHHHHHHHHHHHhCCCCCCceeEEEecCcchHH
Q 048009 379 RPIIEMTIPSVLDKTISPPGNHVINLFIQYTPYKPSDGSWMDPAYRDSFANRCFSLIDEYAPGFSSSIIGYDMLTPPDLE 458 (531)
Q Consensus 379 ~~~~~~~~~s~~d~~~ap~G~~~l~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~~~~P~~~~~i~~~~~~tp~~~~ 458 (531)
.+.+.+.+.|...|..+|+|+.++++++... .. ...++. ..+++.+.+++.|.++++ +...+....+ ..|.
T Consensus 332 ~~~~~~i~~s~~~p~~~p~g~~~l~~~~~g~-~~--~~~~~~--~~ee~~~~v~~~L~~~~g-i~~~p~~~~v---~rw~ 402 (462)
T TIGR00562 332 FAILGCIFTSKLFPNRAPPGKTLLTAYIGGA-TD--ESIVDL--SENEIINIVLRDLKKVLN-INNEPEMLCV---TRWH 402 (462)
T ss_pred CceEEEEEEccccCCcCCCCcEEEEEEeCCC-CC--ccccCC--CHHHHHHHHHHHHHHHhC-CCCCCcEEEE---eEcc
Confidence 1334455566667888898988887765321 11 111121 248899999999999885 4432322221 1121
Q ss_pred HHhCCCCCcccccCCCccccccCCCCCCCCCCCCCCCCeeecCCCCCCCCCcCCc--hHHHHHHHHHHHh
Q 048009 459 REIGLTGGNIFHGAMGLDSLFLMRPVKGWSNYRTPLQGLYMCGSGTHPGGGVMGA--PGRNAAGIVLQDL 526 (531)
Q Consensus 459 ~~~~~~~G~~~~~~~~~~~~~~~rp~~~~~~~~t~~~~ly~aG~~~~~g~g~~~~--sg~~aa~~i~~~~ 526 (531)
...|...+.+ ......+++ ...++.+|||+||+|.. |.++++| ||+.+|++|++.+
T Consensus 403 --~a~P~~~~g~----~~~~~~i~~-----~l~~~~~~l~l~G~~~~-g~~i~~~i~sg~~~a~~~~~~~ 460 (462)
T TIGR00562 403 --RAIPQYHVGH----DQRLKEARE-----LLESAYPGVFLTGNSFE-GVGIPDCIDQGKAAASDVLTFL 460 (462)
T ss_pred --ccCCCCCCCh----HHHHHHHHH-----HHHhhCCCEEEeccccC-CCcHHHHHHHHHHHHHHHHHhh
Confidence 1122211110 000000111 01123479999999985 6788887 9999999998765
No 14
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=99.96 E-value=1.1e-26 Score=235.37 Aligned_cols=426 Identities=15% Similarity=0.189 Sum_probs=226.7
Q ss_pred CcEEEECCChhHHHHHHHHHHc------CCcEEEEccCCCCCceeecccccCCeeecccchhhhcchhhhhhc----Ccc
Q 048009 18 WDALVIGGGHNGLTAAAYLARA------GLSVAVLERRHVIGGAAVTEELIPGFKFSRCSYLQSLLRPSLIKC----GTR 87 (531)
Q Consensus 18 ~dvvIIGaGiaGL~aA~~L~~~------G~~V~v~E~~~~~GG~~~s~~~~~g~~~d~g~~~~~~~~~~~~~~----gl~ 87 (531)
.+|+|||||++||+||+.|+++ |++|+|+|+++++||++.|.. ..|+.+|.|++++....+.+++. |+.
T Consensus 2 ~~v~VIGaGisGL~aA~~L~~~~~~~~~~~~V~vlEa~~r~GGr~~T~~-~~g~~~e~G~~~i~~~~~~~~~l~~~lgl~ 80 (463)
T PRK12416 2 KTVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEEYLGGKIHSVE-EKDFIMESGADSIVARNEHVMPLVKDLNLE 80 (463)
T ss_pred CeEEEECCCHHHHHHHHHHHhhhhccCCCccEEEEecCCCccceEEEEe-eCCEEEecCcHHHhcCCHHHHHHHHHcCCc
Confidence 4799999999999999999986 379999999999999999986 67899999998876666665544 553
Q ss_pred cccchhhhccchhhhHHHHHHHHHHHHHHHHHHhhcCCCcccccCC-CcchhhhhhhhhhhhhH--HHHHHHHHhcChhh
Q 048009 88 IGETWNEVVEAKSIIVYAIFEDQLDKFSQFVDLLFDSSPPELLQGS-SSYSHQFKNKIRNSAFW--AHCLRRAISLGQKD 164 (531)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 164 (531)
......... ..+....+. +. ..+....... ..+........ .... .+.+........ .
T Consensus 81 ~~~~~~~~~-----~~~~~~~~~----------~~-~~p~~~~~~~p~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~-~ 141 (463)
T PRK12416 81 EEMVYNETG-----ISYIYSDNT----------LH-PIPSDTIFGIPMSVESLFSSTL--VSTKGKIVALKDFITKNK-E 141 (463)
T ss_pred cceecCCCC-----ceEEEECCe----------EE-ECCCCCeecCCCChHHhhcCCc--CCHHHHHHhhhhhccCCC-C
Confidence 221110000 000000000 00 0000000000 00000000000 0000 000000000000 0
Q ss_pred HHHHHHHHhccHHHHhhcccCChhHHHHHhhh--hhhccCCCCCCCChHH--H-H----------HHHHh---hcc-CCC
Q 048009 165 LVEFVDLLLSPASKVLNKWFETDVLKATLATD--AVIGTMSSVHTPGSGY--V-L----------LHHVM---GET-DGN 225 (531)
Q Consensus 165 ~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~--~~~g~~~~~~~~~~~~--~-~----------~~~~~---~~~-~~~ 225 (531)
.....++.+|+.+.+..+..+.++... ++.+. .+....... . + +..+. ... ...
T Consensus 142 -----~~~~~sv~~~l~~~~~~~~~~~~~~p~~~~~~~~--~~~~ls~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~ 214 (463)
T PRK12416 142 -----FTKDTSLALFLESFLGKELVERQIAPVLSGVYSG--KLNELTMASTLPYLLDYKNKYGSIIKGFEENKKQFQSAG 214 (463)
T ss_pred -----CCCCCCHHHHHHHhcCHHHHHHHHHHHhcccccC--CcccccHHHhhHHHHHHHHhcCcHHHHHHHhhhccCCCC
Confidence 012456777777666555444444311 11111 111111110 0 0 00000 000 011
Q ss_pred CCccccccCchHHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChHhHHhhcCCCCC
Q 048009 226 PGIWSYVEGGMGSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYKTFMDLVPGNI 305 (531)
Q Consensus 226 ~~~~~~~~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~~~~~~ll~~~~ 305 (531)
...+.+++||++.|+++|++.+.+ ++|+++++|++|+.++ +++ .|++.+|+++.||+||+|+++.. +.+|++.+.
T Consensus 215 ~~~~~~~~gG~~~l~~~l~~~l~~--~~i~~~~~V~~I~~~~-~~~-~v~~~~g~~~~ad~VI~a~p~~~-~~~ll~~~~ 289 (463)
T PRK12416 215 NKKFVSFKGGLSTIIDRLEEVLTE--TVVKKGAVTTAVSKQG-DRY-EISFANHESIQADYVVLAAPHDI-AETLLQSNE 289 (463)
T ss_pred CCceEeeCCCHHHHHHHHHHhccc--ccEEcCCEEEEEEEcC-CEE-EEEECCCCEEEeCEEEECCCHHH-HHhhcCCcc
Confidence 123457899999999999998865 6899999999999887 554 58888888899999999887666 578876533
Q ss_pred CChHHHHHhhccCCCCCeEEEeeecCCCCccccccCCCCCCCCCcceEEEECCCCHHHHHHHHHHHHcCCCCCCCeEEEE
Q 048009 306 LPDDFILSIKHSDYSSGTTKINLAVDKLPQFQCCKLSHPDPGPQHVGTIHIGSESMEEIHSACQEAVNGLPSRRPIIEMT 385 (531)
Q Consensus 306 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (531)
+ ...+.++.+ .++.+++++++.++... .+...|.+.. .+. ......+.
T Consensus 290 l----~~~~~~~~~-~~~~~v~l~~~~~~~~~---------~~~g~G~l~~-~~~-----------------~~~~~~~~ 337 (463)
T PRK12416 290 L----NEQFHTFKN-SSLISIYLGFDILDEQL---------PADGTGFIVT-ENS-----------------DLHCDACT 337 (463)
T ss_pred h----hHHHhcCCC-CceEEEEEEechhhcCC---------CCCceEEEee-CCC-----------------CCeEEEEE
Confidence 3 334566666 68899999998643110 0112222222 110 00112234
Q ss_pred eCCCCCCCCCCCCceEEEEEecc-ccCCCCCCCCCChHHHHHHHHHHHHHHHHhCCCCCCceeEEEecCcchHHHHhCCC
Q 048009 386 IPSVLDKTISPPGNHVINLFIQY-TPYKPSDGSWMDPAYRDSFANRCFSLIDEYAPGFSSSIIGYDMLTPPDLEREIGLT 464 (531)
Q Consensus 386 ~~s~~d~~~ap~G~~~l~~~~~~-~~~~~~~~~~~~~~~k~~~~~~~~~~l~~~~P~~~~~i~~~~~~tp~~~~~~~~~~ 464 (531)
++|...+..+|+++.++.+++.. .+....-.+++ .+++.+.++++|++++. +........+ ..|.. ..|
T Consensus 338 ~~s~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~----dee~~~~~~~~L~~~lG-~~~~p~~~~v---~~W~~--a~P 407 (463)
T PRK12416 338 WTSRKWKHTSGKQKLLVRMFYKSTNPVYETIKNYS----EEELVRVALYDIEKSLG-IKGEPEVVEV---TNWKD--LMP 407 (463)
T ss_pred eecCCCCCcCCCCeEEEEEEeCCCCCCchhhhcCC----HHHHHHHHHHHHHHHhC-CCCCceEEEE---EEccc--cCC
Confidence 55555566666666555555321 11110000222 48899999999999884 3333322222 12221 233
Q ss_pred CCcccccCCCccccccCCCCCCCCCCCCCCCCeeecCCCCCCCCCcCCc--hHHHHHHHHHHHhh
Q 048009 465 GGNIFHGAMGLDSLFLMRPVKGWSNYRTPLQGLYMCGSGTHPGGGVMGA--PGRNAAGIVLQDLK 527 (531)
Q Consensus 465 ~G~~~~~~~~~~~~~~~rp~~~~~~~~t~~~~ly~aG~~~~~g~g~~~~--sg~~aa~~i~~~~~ 527 (531)
.+.+.+.. ...+ +++ ....+.+|||+||++.. |.++++| ||+.||++|++.++
T Consensus 408 ~y~~~~~~-~~~~---~~~-----~l~~~~~~l~~aG~~~~-g~~i~~ai~sg~~aA~~i~~~~~ 462 (463)
T PRK12416 408 KYHLEHNQ-AVQS---LQE-----KMMNLYPNIYLAGASYY-GVGIGACIGNGKNTANEIIATLN 462 (463)
T ss_pred CcCcCHHH-HHHH---HHH-----HHHhhCCCeEEeccccc-cccHHHHHHHHHHHHHHHHHHhh
Confidence 33221100 0000 111 11223589999999975 7789888 99999999997653
No 15
>PRK07208 hypothetical protein; Provisional
Probab=99.96 E-value=4e-26 Score=232.52 Aligned_cols=420 Identities=15% Similarity=0.156 Sum_probs=228.0
Q ss_pred CCCCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCCCCceeecccccCCeeecccchhhhcchhhhhhc----Cccccc
Q 048009 15 EKKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAVTEELIPGFKFSRCSYLQSLLRPSLIKC----GTRIGE 90 (531)
Q Consensus 15 ~~~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~GG~~~s~~~~~g~~~d~g~~~~~~~~~~~~~~----gl~~~~ 90 (531)
+.+.||+|||||++||+||+.|+++|++|+|+|+++++||++.+.. ..|+.+|.|++++....+.+++. ++...+
T Consensus 2 ~~~~~vvIiGaGisGL~aA~~L~~~g~~v~v~E~~~~~GG~~~s~~-~~g~~~d~G~h~~~~~~~~~~~l~~~l~~~~~~ 80 (479)
T PRK07208 2 TNKKSVVIIGAGPAGLTAAYELLKRGYPVTVLEADPVVGGISRTVT-YKGNRFDIGGHRFFSKSPEVMDLWNEILPDDDF 80 (479)
T ss_pred CCCCcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCceeeeec-cCCceEccCCceeccCCHHHHHHHHHhcCCCcc
Confidence 3568999999999999999999999999999999999999999875 67899999998766555554443 211000
Q ss_pred chh-h---hccchhhhHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCcchhhhhhhhhhhhhHHHHHHHHHhcChhhHH
Q 048009 91 TWN-E---VVEAKSIIVYAIFEDQLDKFSQFVDLLFDSSPPELLQGSSSYSHQFKNKIRNSAFWAHCLRRAISLGQKDLV 166 (531)
Q Consensus 91 ~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (531)
... . +........++ .. ..+.+. ...... ..+............
T Consensus 81 ~~~~~~~~~~~~g~~~~~p---------------------~~-------~~~~l~-~~~~~~-~~~~~~~~~~~~~~~-- 128 (479)
T PRK07208 81 LLRPRLSRIYYRGKFFDYP---------------------LK-------AFDALK-NLGLWR-TAKCGASYLKARLRP-- 128 (479)
T ss_pred ccccccceEEECCEEecCC---------------------cc-------hhHHHH-hCCHhH-HHHHHHHHHHHhcCC--
Confidence 000 0 00000000000 00 000000 000000 000000000000000
Q ss_pred HHHHHHhccHHHHhhcccCChhHHHHHhh--hhhhccCCCCCCCChH-----------HHHHHHHhhc-----------c
Q 048009 167 EFVDLLLSPASKVLNKWFETDVLKATLAT--DAVIGTMSSVHTPGSG-----------YVLLHHVMGE-----------T 222 (531)
Q Consensus 167 ~~~~~~~~~~~~~l~~~~~~~~l~~~~~~--~~~~g~~~~~~~~~~~-----------~~~~~~~~~~-----------~ 222 (531)
.....++.+|+.+.+..+..+.++.. ..+.+. .+...+.. ...+...+.. .
T Consensus 129 ---~~~~~s~~e~l~~~~g~~~~~~~~~p~~~~~~~~--~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (479)
T PRK07208 129 ---RKEEDSFEDWVINRFGRRLYSTFFKGYTEKVWGV--PCDEISADWAAQRIKGLSLGKAIRNALRRSLGLKRRNKEVE 203 (479)
T ss_pred ---CCCCCCHHHHHHHhhCHHHHHHHHHHhhhhhhCC--ChHHCCChHHhCcccCCCHHHHHHHHhhhcccccccCCCcc
Confidence 00235666666665555544444331 111111 11111111 1011101100 0
Q ss_pred CCCCCccccccCchHHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeC--CCc--EEEcCeEEecCChHhHHh
Q 048009 223 DGNPGIWSYVEGGMGSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLA--DGA--QVHSSIVLSNATPYKTFM 298 (531)
Q Consensus 223 ~~~~~~~~~~~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~--~g~--~~~ad~VV~aa~~~~~~~ 298 (531)
......+.+|+||++.|+++|.+.+++.|++|++|++|++|..++++.+..+... +|+ ++.||+||+|+++..+ .
T Consensus 204 ~~~~~~~~~p~gG~~~l~~~L~~~l~~~g~~i~~~~~V~~I~~~~~~~v~~~~~~~~~g~~~~~~ad~VI~a~p~~~l-~ 282 (479)
T PRK07208 204 TSLIEEFRYPKLGPGQLWETAAEKLEALGGKVVLNAKVVGLHHDGDGRIAVVVVNDTDGTEETVTADQVISSMPLREL-V 282 (479)
T ss_pred ccceeEEeCCCCCcchHHHHHHHHHHHcCCEEEeCCEEEEEEEcCCcEEEEEEEEcCCCCEEEEEcCEEEECCCHHHH-H
Confidence 0011345689999999999999999999999999999999999873334444442 453 5889999999888875 5
Q ss_pred hcCCCCCCChHHHHHhhccCCCCCeEEEeeecCCCCccccccCCCCCCCCCcceEEEECCCCHHHHHHHHHHHHcCCCCC
Q 048009 299 DLVPGNILPDDFILSIKHSDYSSGTTKINLAVDKLPQFQCCKLSHPDPGPQHVGTIHIGSESMEEIHSACQEAVNGLPSR 378 (531)
Q Consensus 299 ~ll~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (531)
+++++ .+++...+.++.+++ .+++++++.+++++.. +.+ .+++.+...
T Consensus 283 ~~l~~-~~~~~~~~~~~~l~~-~~~~~v~l~~~~~~~~-----------~~~--~~~~~~~~~----------------- 330 (479)
T PRK07208 283 AALDP-PPPPEVRAAAAGLRY-RDFITVGLLVKELNLF-----------PDN--WIYIHDPDV----------------- 330 (479)
T ss_pred HhcCC-CCCHHHHHHHhCCCc-ceeEEEEEEecCCCCC-----------CCc--eEEecCCCC-----------------
Confidence 66653 367777777888877 4688999999875422 112 344421110
Q ss_pred CCeEEEEeCCCCCCCCCCCCceEEEEEeccccCCCCCCCCCChHHHHHHHHHHHHHHHHhCCCCCCceeEEEecCcchHH
Q 048009 379 RPIIEMTIPSVLDKTISPPGNHVINLFIQYTPYKPSDGSWMDPAYRDSFANRCFSLIDEYAPGFSSSIIGYDMLTPPDLE 458 (531)
Q Consensus 379 ~~~~~~~~~s~~d~~~ap~G~~~l~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~~~~P~~~~~i~~~~~~tp~~~~ 458 (531)
..-.+..++..+|..+|+|++ ..+.+.+..+. ....|.. .++++.+.+++.|+++.+.-.+.++...+.. ++
T Consensus 331 -~~~r~~~~~~~~~~~~p~g~~-~~l~~~~~~~~-~~~~~~~--~deel~~~~~~~L~~l~~~~~~~~~~~~v~r---~~ 402 (479)
T PRK07208 331 -KVGRLQNFNNWSPYLVPDGRD-TWLGLEYFCFE-GDDLWNM--SDEDLIALAIQELARLGLIRPADVEDGFVVR---VP 402 (479)
T ss_pred -ccceecccccCCcccCCCCCc-eEEEEEEEccC-CCccccC--CHHHHHHHHHHHHHHcCCCChhheeEEEEEE---ec
Confidence 000133445667888999886 22221111111 1123433 2478999999999997441144444433211 11
Q ss_pred HHhCCCCCcccccCCCccccccCCCCCCCCCCCCCCCCeeecCCCC-CCCCCcCCc--hHHHHHHHHHHH
Q 048009 459 REIGLTGGNIFHGAMGLDSLFLMRPVKGWSNYRTPLQGLYMCGSGT-HPGGGVMGA--PGRNAAGIVLQD 525 (531)
Q Consensus 459 ~~~~~~~G~~~~~~~~~~~~~~~rp~~~~~~~~t~~~~ly~aG~~~-~~g~g~~~~--sg~~aa~~i~~~ 525 (531)
...|.....+. .... ..+ ...++.+|||++|... +....+.++ ||..+|+.|+..
T Consensus 403 --~a~P~y~~~~~-~~~~---~~~------~~~~~~~~l~laGr~~~~~~~~~d~a~~sg~~~a~~i~~~ 460 (479)
T PRK07208 403 --KAYPVYDGTYE-RNVE---IIR------DLLDHFPNLHLVGRNGMHRYNNQDHSMLTAMLAVENIIAG 460 (479)
T ss_pred --CcccCCCchHH-HHHH---HHH------HHHHhcCCceeeccccccccCChhHHHHHHHHHHHHHhcC
Confidence 11121111100 0000 011 1224568999999776 333455555 999999998765
No 16
>PLN02576 protoporphyrinogen oxidase
Probab=99.95 E-value=2.3e-25 Score=227.95 Aligned_cols=431 Identities=14% Similarity=0.106 Sum_probs=226.1
Q ss_pred CCCcEEEECCChhHHHHHHHHHHc-CCcEEEEccCCCCCceeecccccCCeeecccchhhhcchhhhhhc---Ccccccc
Q 048009 16 KKWDALVIGGGHNGLTAAAYLARA-GLSVAVLERRHVIGGAAVTEELIPGFKFSRCSYLQSLLRPSLIKC---GTRIGET 91 (531)
Q Consensus 16 ~~~dvvIIGaGiaGL~aA~~L~~~-G~~V~v~E~~~~~GG~~~s~~~~~g~~~d~g~~~~~~~~~~~~~~---gl~~~~~ 91 (531)
.++||+|||||++||+||++|+++ |++|+|+|+++++||++.|.. ..|+.+|.|++++....+.+... |+.....
T Consensus 11 ~~~~v~IIGaGisGL~aA~~L~~~~g~~v~vlEa~~rvGGr~~t~~-~~g~~~d~G~~~~~~~~~~~~~l~~~gl~~~~~ 89 (496)
T PLN02576 11 SSKDVAVVGAGVSGLAAAYALASKHGVNVLVTEARDRVGGNITSVS-EDGFIWEEGPNSFQPSDPELTSAVDSGLRDDLV 89 (496)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHhcCCCEEEEecCCCCCCceeEec-cCCeEEecCCchhccCcHHHHHHHHcCChhhee
Confidence 468999999999999999999999 999999999999999999986 67999999998876555544322 4321110
Q ss_pred hhh--hc--cchhhhHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCcchhhhhhhhhhhhhHHHHHHHHHhcChhhHHH
Q 048009 92 WNE--VV--EAKSIIVYAIFEDQLDKFSQFVDLLFDSSPPELLQGSSSYSHQFKNKIRNSAFWAHCLRRAISLGQKDLVE 167 (531)
Q Consensus 92 ~~~--~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (531)
+.. .. ...+...+. +......++.. ....+.+++. ............
T Consensus 90 ~~~~~~~~~~~~~g~~~~--------~p~~~~~~~~~-------~~~~~~~~~~-----------~~~~~~~~~~~~--- 140 (496)
T PLN02576 90 FPDPQAPRYVVWNGKLRP--------LPSNPIDLPTF-------DLLSAPGKIR-----------AGLGAFGWKRPP--- 140 (496)
T ss_pred cCCCCceEEEEECCEEEE--------cCCChHHhcCc-------CcCChhHHHH-----------HhHHHhhccCCC---
Confidence 000 00 000000000 00000000000 0000000000 000000000000
Q ss_pred HHHHHhccHHHHhhcccCChhHHHHHhhh--hhhccCCCCCCCChHHH-------------HH----HHHhhcc------
Q 048009 168 FVDLLLSPASKVLNKWFETDVLKATLATD--AVIGTMSSVHTPGSGYV-------------LL----HHVMGET------ 222 (531)
Q Consensus 168 ~~~~~~~~~~~~l~~~~~~~~l~~~~~~~--~~~g~~~~~~~~~~~~~-------------~~----~~~~~~~------ 222 (531)
......++.+|+.+.+..+..+.++... +..+. .+...+.... ++ .......
T Consensus 141 -~~~~~~sv~~~l~~~~g~~~~~~~~~p~~~~~~~~--~~~~lS~~~~~~~~~~~e~~~gs~~~~~l~~~~~~~~~~~~~ 217 (496)
T PLN02576 141 -PPGREESVGEFVRRHLGDEVFERLIDPFVSGVYAG--DPSSLSMKAAFPKLWNLEKRGGSIIGGAIKAIQEAKKNPKPE 217 (496)
T ss_pred -CCCCCCcHHHHHHHhcCHHHHHHHHHHHhCceecC--CHHHHhHHHHhHHHHHHHHhcCcHHHHHHHhhhhhccccccc
Confidence 0012356677777666555554444311 11111 1111111100 00 0000000
Q ss_pred ------C-CCCCccccccCchHHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeC--CCc-EEEcCeEEecCC
Q 048009 223 ------D-GNPGIWSYVEGGMGSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLA--DGA-QVHSSIVLSNAT 292 (531)
Q Consensus 223 ------~-~~~~~~~~~~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~--~g~-~~~ad~VV~aa~ 292 (531)
. ........++||++.|+++|++.+.+ ++|++|++|++|+.++ ++.+.|++. +|+ ++.||+||+|++
T Consensus 218 ~~~~~~~~~~~~~~~~~~gG~~~L~~~la~~l~~--~~i~l~~~V~~I~~~~-~~~~~v~~~~~~g~~~~~ad~VI~a~P 294 (496)
T PLN02576 218 PRDPRLPKPKGQTVGSFRGGLQTLPDALAKRLGK--DKVKLNWKVLSLSKND-DGGYSLTYDTPEGKVNVTAKAVVMTAP 294 (496)
T ss_pred ccccccccccCCeeEeccchHHHHHHHHHHhhCc--CcEEcCCEEEEEEECC-CCcEEEEEecCCCceeEEeCEEEECCC
Confidence 0 00111236799999999999876521 6899999999999877 441234443 553 699999999887
Q ss_pred hHhHHhhcCCCCCCChHHHHHhhccCCCCCeEEEeeecCCCCccccccCCCCCCCCCcceEEEECCCCHHHHHHHHHHHH
Q 048009 293 PYKTFMDLVPGNILPDDFILSIKHSDYSSGTTKINLAVDKLPQFQCCKLSHPDPGPQHVGTIHIGSESMEEIHSACQEAV 372 (531)
Q Consensus 293 ~~~~~~~ll~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (531)
+.. +..++++ .++...+.+.+++| .++.++++.++++. +.. ....+.... +.-++...
T Consensus 295 ~~~-l~~ll~~--~~~~~~~~l~~~~~-~~~~~v~l~~~~~~-~~~--~~~~~~~~~--~~g~l~~~------------- 352 (496)
T PLN02576 295 LYV-VSEMLRP--KSPAAADALPEFYY-PPVAAVTTSYPKEA-VKR--ERLIDGPLE--GFGQLHPR------------- 352 (496)
T ss_pred HHH-HHHHhcc--cCHHHHHHhccCCC-CceEEEEEEEchHH-ccc--ccccCCCCC--ceEEEccC-------------
Confidence 777 5777764 56667888888888 67788888887632 110 000000011 11111100
Q ss_pred cCCCCCCCeEEEEeCCCCCCCCCCCCceEEEEEeccccCCCCCCCCCChHHHHHHHHHHHHHHHHhCCCCC-CceeEEEe
Q 048009 373 NGLPSRRPIIEMTIPSVLDKTISPPGNHVINLFIQYTPYKPSDGSWMDPAYRDSFANRCFSLIDEYAPGFS-SSIIGYDM 451 (531)
Q Consensus 373 ~~~~~~~~~~~~~~~s~~d~~~ap~G~~~l~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~~~~P~~~-~~i~~~~~ 451 (531)
....+.+.+.+.+...|.++|+++..+++++..... ..-|+. .++++.+.+++.|.++++.-. .......+
T Consensus 353 ---~~~~~~lg~~~~s~~~p~~~~~~~~~l~~~~~~~~~---~~~~~~--s~ee~~~~~~~~L~~~~g~~~~~~p~~~~~ 424 (496)
T PLN02576 353 ---KQGVKTLGTIYSSSLFPDRAPEGRVLLLNYIGGSRN---TGIASA--SEEELVEAVDRDLRKLLLKPGAPPPKVVGV 424 (496)
T ss_pred ---CCCCceEEEEeecCcCCCCCCCCCEEEEEEECCCCC---cccccC--CHHHHHHHHHHHHHHHhCCCCCCCCcEEEE
Confidence 011133445556666788888887777666432111 111211 248899999999999886321 11111111
Q ss_pred cCcchHHHHhCCCCCcccccCCCccccccCCCCCCCCCCCCCC--CCeeecCCCCCCCCCcCCc--hHHHHHHHHHHHhh
Q 048009 452 LTPPDLEREIGLTGGNIFHGAMGLDSLFLMRPVKGWSNYRTPL--QGLYMCGSGTHPGGGVMGA--PGRNAAGIVLQDLK 527 (531)
Q Consensus 452 ~tp~~~~~~~~~~~G~~~~~~~~~~~~~~~rp~~~~~~~~t~~--~~ly~aG~~~~~g~g~~~~--sg~~aa~~i~~~~~ 527 (531)
..|. ...|.....+.. .... .+ ...... +|||+||+|+. |.++++| ||+.+|++|++.+.
T Consensus 425 ---~~w~--~a~P~~~~g~~~-~~~~---~~------~~l~~~~~~~l~~aG~~~~-g~~i~~ai~sg~~aA~~i~~~~~ 488 (496)
T PLN02576 425 ---RVWP--KAIPQYLLGHLD-VLEA---AE------KMEKDLGLPGLFLGGNYRG-GVALGKCVESGYEAADLVISYLE 488 (496)
T ss_pred ---eEcC--cccCCCCcCHHH-HHHH---HH------HHHHhcCCCCEEEeccccC-CccHHHHHHHHHHHHHHHHHHHh
Confidence 1122 112222111100 0000 00 000112 69999999996 6789987 99999999988764
Q ss_pred h
Q 048009 528 K 528 (531)
Q Consensus 528 ~ 528 (531)
.
T Consensus 489 ~ 489 (496)
T PLN02576 489 S 489 (496)
T ss_pred h
Confidence 3
No 17
>PLN02268 probable polyamine oxidase
Probab=99.94 E-value=5.8e-25 Score=221.16 Aligned_cols=234 Identities=16% Similarity=0.144 Sum_probs=139.5
Q ss_pred cccCchHHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChHhHHhh-cC-CCCCCCh
Q 048009 231 YVEGGMGSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYKTFMD-LV-PGNILPD 308 (531)
Q Consensus 231 ~~~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~~~~~~-ll-~~~~~~~ 308 (531)
++.+|+++++++|.+ +++|++|++|++|..++ +.+. |++.+|+++.||+||+|+++.. +.+ ++ ..+.+|+
T Consensus 195 ~~~~G~~~l~~~l~~-----~~~i~~~~~V~~i~~~~-~~v~-v~~~~g~~~~ad~VIva~P~~~-l~~~~i~f~p~lp~ 266 (435)
T PLN02268 195 LMVRGYDPVINTLAK-----GLDIRLNHRVTKIVRRY-NGVK-VTVEDGTTFVADAAIIAVPLGV-LKANIIKFEPELPE 266 (435)
T ss_pred eecCCHHHHHHHHhc-----cCceeCCCeeEEEEEcC-CcEE-EEECCCcEEEcCEEEEecCHHH-HhcCcceecCCCCH
Confidence 678899999999854 56799999999999877 5554 8888888899999999887776 343 22 2356888
Q ss_pred HHHHHhhccCCCCCeEEEeeecCCCCccccccCCCCCCCCCcceEEEECCCCHHHHHHHHHHHHcCCCCCCCeEEEEeCC
Q 048009 309 DFILSIKHSDYSSGTTKINLAVDKLPQFQCCKLSHPDPGPQHVGTIHIGSESMEEIHSACQEAVNGLPSRRPIIEMTIPS 388 (531)
Q Consensus 309 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 388 (531)
...+.++++.| ....++++.++++. |. + ....| .+.+. .....+....
T Consensus 267 ~~~~ai~~~~~-g~~~Kv~l~f~~~f-w~-------~--~~~~g--~~~~~------------------~~~~~~~~~~- 314 (435)
T PLN02268 267 WKEEAISDLGV-GIENKIALHFDSVF-WP-------N--VEFLG--VVAPT------------------SYGCSYFLNL- 314 (435)
T ss_pred HHHHHHHhCCc-cceeEEEEEeCCCC-CC-------C--Cceee--ccCCC------------------CCCceEEEec-
Confidence 88889999887 67889999998742 21 1 01111 11000 0011111111
Q ss_pred CCCCCCCCCCceEEEEEeccccCCCCCCCCCChHHHHHHHHHHHHHHHHhCCCCCCceeEEEecCcchHHHHhCCCCCcc
Q 048009 389 VLDKTISPPGNHVINLFIQYTPYKPSDGSWMDPAYRDSFANRCFSLIDEYAPGFSSSIIGYDMLTPPDLEREIGLTGGNI 468 (531)
Q Consensus 389 ~~d~~~ap~G~~~l~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~~~~P~~~~~i~~~~~~tp~~~~~~~~~~~G~~ 468 (531)
..+.|+.++++++.. +... .+.. ...+++.+.+++.|.+++|...+.+.... ..|.... ...|+.
T Consensus 315 -----~~~~g~~~l~~~~~g-~~a~---~~~~-~~~~e~~~~v~~~L~~~~~~~~~p~~~~~----~~W~~dp-~~~G~~ 379 (435)
T PLN02268 315 -----HKATGHPVLVYMPAG-RLAR---DIEK-LSDEAAANFAMSQLKKMLPDATEPVQYLV----SRWGSDP-NSLGCY 379 (435)
T ss_pred -----ccCCCCCEEEEEecc-HHHH---HHHh-CCHHHHHHHHHHHHHHHcCCCCCccEEEe----cccCCCC-CCCccC
Confidence 112355666665432 1110 1111 12378999999999999985433222221 2232211 112221
Q ss_pred cccCCCccccccCCCCCCCCCCCCCCCCeeecCCCCCCC--CCcCCc--hHHHHHHHHHHHh
Q 048009 469 FHGAMGLDSLFLMRPVKGWSNYRTPLQGLYMCGSGTHPG--GGVMGA--PGRNAAGIVLQDL 526 (531)
Q Consensus 469 ~~~~~~~~~~~~~rp~~~~~~~~t~~~~ly~aG~~~~~g--~g~~~~--sg~~aa~~i~~~~ 526 (531)
.... +.+.....+ ..+.|+.+|||||+.+... +.+.|| ||..||++|+..+
T Consensus 380 ~~~~--~g~~~~~~~-----~l~~p~~~l~FAGe~ts~~~~g~~eGA~~sG~raA~~v~~~l 434 (435)
T PLN02268 380 SYDL--VGKPHDLYE-----RLRAPVDNLFFAGEATSSDFPGSVHGAYSTGVMAAEECRMRL 434 (435)
T ss_pred CCCC--CCCCHHHHH-----HHhCCCCCeEEeeccCCCcccccHHHHHHHHHHHHHHHHHhh
Confidence 1111 111100111 3456788999999999652 456788 9999999998753
No 18
>PLN02676 polyamine oxidase
Probab=99.94 E-value=1.6e-24 Score=217.65 Aligned_cols=243 Identities=18% Similarity=0.173 Sum_probs=141.7
Q ss_pred cCchHHHHHHHHHHHHHc------CcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChHhHHhh--cCCCC
Q 048009 233 EGGMGSVSMAIGSAAREA------GAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYKTFMD--LVPGN 304 (531)
Q Consensus 233 ~gG~~~l~~~l~~~~~~~------G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~~~~~~--ll~~~ 304 (531)
+||+++|++.|++.+.+. +.+|++|++|++|..++ +.|. |++.+|+++.||+||+|+++.. +.+ +...+
T Consensus 220 ~~G~~~l~~~La~~~~~~~~~~~~~~~I~l~~~V~~I~~~~-~gV~-V~~~~G~~~~a~~VIvtvPl~v-Lk~~~I~F~P 296 (487)
T PLN02676 220 PRGYESLVYYLAEQFLSTKSGKITDPRLKLNKVVREISYSK-NGVT-VKTEDGSVYRAKYVIVSVSLGV-LQSDLIKFKP 296 (487)
T ss_pred CCCHHHHHHHHHhhcccccccccCCCceecCCEeeEEEEcC-CcEE-EEECCCCEEEeCEEEEccChHH-hccCceEEeC
Confidence 689999999999877543 25799999999999887 5554 8899998899999999887666 443 43345
Q ss_pred CCChHHHHHhhccCCCCCeEEEeeecCCCCccccccCCCCCCCCCcceEEEECCCCHHHHHHHHHHHHcCCCCCCCeEEE
Q 048009 305 ILPDDFILSIKHSDYSSGTTKINLAVDKLPQFQCCKLSHPDPGPQHVGTIHIGSESMEEIHSACQEAVNGLPSRRPIIEM 384 (531)
Q Consensus 305 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (531)
.+|+...+.++++.+ ..+.++++.++++ || ++ .+.. .+....+.. .+. ..++.
T Consensus 297 ~LP~~k~~ai~~l~~-g~~~Kv~l~f~~~--FW------~~-~~~~--~~~~~~~~~-----------~~~----~~~~~ 349 (487)
T PLN02676 297 PLPDWKIEAIYQFDM-AVYTKIFLKFPYK--FW------PS-GPGT--EFFLYAHER-----------RGY----YPFWQ 349 (487)
T ss_pred CCCHHHHHHHHhCCc-eeeEEEEEEeCCC--CC------CC-CCCc--eeeeeeccc-----------ccc----chhhh
Confidence 699888889998888 7889999999875 33 11 0111 111100000 000 00011
Q ss_pred EeCCCCCCCCCCCCceEEEEEeccccCCCCCCCCCChHHHHHHHHHHHHHHHHhCC-CCCCceeEEEecCcchHHHHhCC
Q 048009 385 TIPSVLDKTISPPGNHVINLFIQYTPYKPSDGSWMDPAYRDSFANRCFSLIDEYAP-GFSSSIIGYDMLTPPDLEREIGL 463 (531)
Q Consensus 385 ~~~s~~d~~~ap~G~~~l~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~~~~P-~~~~~i~~~~~~tp~~~~~~~~~ 463 (531)
. .+. .++|..++.++.. .+.. ..|+. ...++..+.+++.|+++++ .+...+.... .+|... ..
T Consensus 350 ~----~~~--~~~~~~~l~~~~~-g~~a---~~~~~-~s~e~~~~~vl~~L~~~~g~~~~~p~~~~~----~~W~~d-p~ 413 (487)
T PLN02676 350 H----LEN--EYPGSNVLFVTVT-DEES---RRIEQ-QPDSETKAEIMEVLRKMFGPNIPEATDILV----PRWWSN-RF 413 (487)
T ss_pred h----ccc--CCCCCCEEEEEec-hHHH---HHHHh-CCHHHHHHHHHHHHHHHhCCCCCCcceEEe----cccCCC-CC
Confidence 1 011 1224445554432 1110 01111 1236788899999999985 2222111111 122221 11
Q ss_pred CCCcccccCCCccccccCCCCCCCCCCCCCCCCeeecCCCCCC--CCCcCCc--hHHHHHHHHHHHhhh
Q 048009 464 TGGNIFHGAMGLDSLFLMRPVKGWSNYRTPLQGLYMCGSGTHP--GGGVMGA--PGRNAAGIVLQDLKK 528 (531)
Q Consensus 464 ~~G~~~~~~~~~~~~~~~rp~~~~~~~~t~~~~ly~aG~~~~~--g~g~~~~--sg~~aa~~i~~~~~~ 528 (531)
..|++.... +.+.....+ ..+.|+.+|||||+.+.. .+.++|| ||++||++|++.++.
T Consensus 414 s~Gsys~~~--pG~~~~~~~-----~L~~P~gri~FAGe~ts~~~~g~~eGA~~SG~RaA~~I~~~l~~ 475 (487)
T PLN02676 414 FKGSYSNWP--IGVSRYEFD-----QIRAPVGRVYFTGEHTSEKYNGYVHGAYLAGIDTANDLLECIKK 475 (487)
T ss_pred CCcccCCCC--CCCChhHHH-----HHhCCCCceEEeccccccccccchHHHHHHHHHHHHHHHHHhcc
Confidence 123221111 111100111 335678899999999965 3456788 999999999987643
No 19
>PLN02568 polyamine oxidase
Probab=99.94 E-value=2.5e-24 Score=217.62 Aligned_cols=101 Identities=19% Similarity=0.146 Sum_probs=81.7
Q ss_pred cccccCchHHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChHhHHhh-----cCCC
Q 048009 229 WSYVEGGMGSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYKTFMD-----LVPG 303 (531)
Q Consensus 229 ~~~~~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~~~~~~-----ll~~ 303 (531)
+..+.||++.|+++|++.+. +.+|++|++|++|..++ +.+. |++.+|+++.||+||+|+++..+... +.-.
T Consensus 234 ~~~i~gG~~~Li~~La~~L~--~~~I~ln~~V~~I~~~~-~~v~-V~~~dG~~~~aD~VIvTvPl~vL~~~~~~~~i~F~ 309 (539)
T PLN02568 234 EITIAKGYLSVIEALASVLP--PGTIQLGRKVTRIEWQD-EPVK-LHFADGSTMTADHVIVTVSLGVLKAGIGEDSGLFS 309 (539)
T ss_pred eEEECCcHHHHHHHHHhhCC--CCEEEeCCeEEEEEEeC-CeEE-EEEcCCCEEEcCEEEEcCCHHHHhhccccccceec
Confidence 44789999999999988774 35799999999999876 5544 88889988999999998887774321 2234
Q ss_pred CCCChHHHHHhhccCCCCCeEEEeeecCCCC
Q 048009 304 NILPDDFILSIKHSDYSSGTTKINLAVDKLP 334 (531)
Q Consensus 304 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 334 (531)
+.+|+.+.++|+.+.+ ..+.++++.+++++
T Consensus 310 P~LP~~k~~Ai~~l~~-g~~~Ki~l~f~~~f 339 (539)
T PLN02568 310 PPLPDFKTDAISRLGF-GVVNKLFVELSPRP 339 (539)
T ss_pred CCCCHHHHHHHHhcCC-ceeeEEEEEecCCC
Confidence 5699988999999988 78899999999863
No 20
>PLN02529 lysine-specific histone demethylase 1
Probab=99.93 E-value=1.6e-23 Score=215.39 Aligned_cols=239 Identities=13% Similarity=0.114 Sum_probs=137.8
Q ss_pred ccccccCchHHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChHhHHh--hcCCCCC
Q 048009 228 IWSYVEGGMGSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYKTFM--DLVPGNI 305 (531)
Q Consensus 228 ~~~~~~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~~~~~--~ll~~~~ 305 (531)
....+.||+++|+++|++ +..|++|++|++|..++ +.|. |++ +++++.||+||+|+++..+ . .+.-.+.
T Consensus 348 ~~~~i~GG~~~Li~aLA~-----~L~IrLnt~V~~I~~~~-dGVt-V~t-~~~~~~AD~VIVTVPlgVL-k~~~I~F~Pp 418 (738)
T PLN02529 348 DHCFLAGGNWRLINALCE-----GVPIFYGKTVDTIKYGN-DGVE-VIA-GSQVFQADMVLCTVPLGVL-KKRTIRFEPE 418 (738)
T ss_pred ceEEECCcHHHHHHHHHh-----cCCEEcCCceeEEEEcC-CeEE-EEE-CCEEEEcCEEEECCCHHHH-HhccccCCCC
Confidence 344789999999999976 34699999999999987 5443 654 4457999999998877774 4 2322445
Q ss_pred CChHHHHHhhccCCCCCeEEEeeecCCCCccccccCCCCCCCCCcceEEEECCCCHHHHHHHHHHHHcCCCCCCCeEEEE
Q 048009 306 LPDDFILSIKHSDYSSGTTKINLAVDKLPQFQCCKLSHPDPGPQHVGTIHIGSESMEEIHSACQEAVNGLPSRRPIIEMT 385 (531)
Q Consensus 306 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (531)
+|+.+.++|+++.| .+..++++.++++ || ++. ....| +...+. .....++..
T Consensus 419 LP~~K~~AI~rL~y-G~v~KV~L~F~~~--FW------~~~-~~~fG--~l~~~~----------------~~~g~~~~~ 470 (738)
T PLN02529 419 LPRRKLAAIDRLGF-GLLNKVAMVFPSV--FW------GEE-LDTFG--CLNESS----------------NKRGEFFLF 470 (738)
T ss_pred CCHHHHHHHHcCCC-ceeEEEEEEeCCc--cc------cCC-CCceE--EEeccC----------------CCCceEEEE
Confidence 89888999999999 6789999999874 22 010 11111 111000 001111121
Q ss_pred eCCCCCCCCCCCCceEEEEEeccccCCCCCCCCCChHHHHHHHHHHHHHHHHhCCC-------CCCceeEEEecCcchHH
Q 048009 386 IPSVLDKTISPPGNHVINLFIQYTPYKPSDGSWMDPAYRDSFANRCFSLIDEYAPG-------FSSSIIGYDMLTPPDLE 458 (531)
Q Consensus 386 ~~s~~d~~~ap~G~~~l~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~~~~P~-------~~~~i~~~~~~tp~~~~ 458 (531)
.+. .. +.|..++.+++.. +... .+.. ...+++.+.+++.|.++++. ....+...|...|.+..
T Consensus 471 -~~~---~~-~~ggpvLvafv~G-~~A~---~le~-lsdeeii~~vl~~L~~ifgp~~~~vp~Pi~~v~t~W~~DP~s~G 540 (738)
T PLN02529 471 -YGY---HT-VSGGPALVALVAG-EAAQ---RFEN-TDPSTLLHRVLSVLRGIYNPKGINVPDPIQTICTRWGSDPLSYG 540 (738)
T ss_pred -ecC---CC-CCCCCEEEEEECc-hhhH---HHhc-CCHHHHHHHHHHHHHHHhCccccccCCceEEEEccCCcCCCCCC
Confidence 111 11 2233456665432 1110 1111 12378889999999998741 12233333333333332
Q ss_pred HHhCCCCCcccccCCCccccccCCCCCCCCCCCCC-CCCeeecCCCCCCC--CCcCCc--hHHHHHHHHHHHhhh
Q 048009 459 REIGLTGGNIFHGAMGLDSLFLMRPVKGWSNYRTP-LQGLYMCGSGTHPG--GGVMGA--PGRNAAGIVLQDLKK 528 (531)
Q Consensus 459 ~~~~~~~G~~~~~~~~~~~~~~~rp~~~~~~~~t~-~~~ly~aG~~~~~g--~g~~~~--sg~~aa~~i~~~~~~ 528 (531)
.|.....|.. ... +. ....| ..+|||||++|.++ +.++|| ||..||++|++.++.
T Consensus 541 sYS~~~~g~~------~~d---~~------~La~pv~grL~FAGEaTs~~~pgtVeGAi~SG~RAA~eIl~~l~~ 600 (738)
T PLN02529 541 SYSHVRVQSS------GSD---YD------ILAESVSGRLFFAGEATTRQYPATMHGAFLSGLREASRILHVARS 600 (738)
T ss_pred CcccCCCCCc------hhH---HH------HHhCCCCCCEEEEEHHHhCCCCeEeHHHHHHHHHHHHHHHHHHhh
Confidence 2221111100 000 00 11223 36899999999653 356688 999999999987643
No 21
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=99.93 E-value=1.4e-23 Score=197.09 Aligned_cols=240 Identities=18% Similarity=0.144 Sum_probs=150.9
Q ss_pred cccCchHHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChHhHHhhcCCCCCCChHH
Q 048009 231 YVEGGMGSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYKTFMDLVPGNILPDDF 310 (531)
Q Consensus 231 ~~~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~~~~~~ll~~~~~~~~~ 310 (531)
.+.||+++|++++++.+ |-.|+++.+|.+|..++ .+|+ |++.+..++.+|+||+|.++.. +.++--.+.+++++
T Consensus 203 ~~~GGmd~la~Afa~ql---~~~I~~~~~V~rI~q~~-~gV~-Vt~~~~~~~~ad~~i~tiPl~~-l~qI~f~P~l~~~~ 276 (450)
T COG1231 203 QRLGGMDQLAEAFAKQL---GTRILLNEPVRRIDQDG-DGVT-VTADDVGQYVADYVLVTIPLAI-LGQIDFAPLLPAEY 276 (450)
T ss_pred ccCccHHHHHHHHHHHh---hceEEecCceeeEEEcC-CeEE-EEeCCcceEEecEEEEecCHHH-HhhcccCCCCCHHH
Confidence 45599999999998766 56799999999999987 5554 8888845699999999765554 56664445688889
Q ss_pred HHHhhccCCCCCeEEEeeecCCCCccccccCCCCCCCCCcceEEEECCCCHHHHHHHHHHHHcCCCCCCCeEEEEeCCCC
Q 048009 311 ILSIKHSDYSSGTTKINLAVDKLPQFQCCKLSHPDPGPQHVGTIHIGSESMEEIHSACQEAVNGLPSRRPIIEMTIPSVL 390 (531)
Q Consensus 311 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 390 (531)
++++....| .+.+++.+.++++ || ++.. .+.|..+. +....+++.+|.
T Consensus 277 ~~a~~~~~y-~~~~K~~v~f~rp--FW------ee~~-~l~G~~~t---------------------D~~~~~i~~~s~- 324 (450)
T COG1231 277 KQAAKGVPY-GSATKIGVAFSRP--FW------EEAG-ILGGESLT---------------------DLGLGFISYPSA- 324 (450)
T ss_pred HHHhcCcCc-chheeeeeecCch--hh------hhcc-cCCceEee---------------------cCCcceEecCcc-
Confidence 999988888 7889999999885 33 1221 12233332 223446777764
Q ss_pred CCCCCCCCceEEEEE-eccccCCCCCCCCCChHHHHHHHHHHHHHHHHhCCCCC-CceeEEEecCcchHHHHhCCCCCcc
Q 048009 391 DKTISPPGNHVINLF-IQYTPYKPSDGSWMDPAYRDSFANRCFSLIDEYAPGFS-SSIIGYDMLTPPDLEREIGLTGGNI 468 (531)
Q Consensus 391 d~~~ap~G~~~l~~~-~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~~~~P~~~-~~i~~~~~~tp~~~~~~~~~~~G~~ 468 (531)
+.. +|..+|.-+ .-..... .|+.- ..++..+.++.++.+++|+-. +...... -.+|.+.....+|.
T Consensus 325 ~~~---~G~gVl~g~~~~g~~A~----~~~~~-~~~~r~~~vl~~l~~~~g~~a~~~f~~~~---~~~W~~dpwt~G~~- 392 (450)
T COG1231 325 PFA---DGPGVLLGSYAFGDDAL----VIDAL-PEAERRQKVLARLAKLFGDEAADPFDYGA---SVDWSKDPWTLGGT- 392 (450)
T ss_pred ccC---CCceEEEeeeeccccce----eEecC-CHHHHHHHHHHhHhhhCChhhccccccce---eeecccCCcCCccc-
Confidence 222 455555442 1111111 33321 126788999999999999433 2222201 11232221122111
Q ss_pred cccCCCccccccCCCCCCCCCCCCCCCCeeecC-CCC-CCCCCcCCc--hHHHHHHHHHHHhh
Q 048009 469 FHGAMGLDSLFLMRPVKGWSNYRTPLQGLYMCG-SGT-HPGGGVMGA--PGRNAAGIVLQDLK 527 (531)
Q Consensus 469 ~~~~~~~~~~~~~rp~~~~~~~~t~~~~ly~aG-~~~-~~g~g~~~~--sg~~aa~~i~~~~~ 527 (531)
......+...+-| ....|...++||| +++ .-+|.+.|| ||+.||.+|...+.
T Consensus 393 --aa~~~g~~~~~~~-----~l~~p~gRIh~AgtEhas~~~Gw~eGAi~Sg~~AA~ei~~~l~ 448 (450)
T COG1231 393 --AAYPPGQRTKLYP-----TLPAPHGRIHFAGTEHASEFGGWLEGAIRSGQRAAAEIHALLS 448 (450)
T ss_pred --cccCCcccccccc-----cccCCCCceEEeeecccccccchhHHHHHHHHHHHHHHHHhhc
Confidence 1223333322222 4456788999999 666 236678888 99999999987654
No 22
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=99.93 E-value=1.3e-23 Score=217.02 Aligned_cols=239 Identities=13% Similarity=0.091 Sum_probs=142.2
Q ss_pred cccccCchHHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChHhHHhh--cCCCCCC
Q 048009 229 WSYVEGGMGSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYKTFMD--LVPGNIL 306 (531)
Q Consensus 229 ~~~~~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~~~~~~--ll~~~~~ 306 (531)
+..+.||++.|+++|++.+ .|++|++|++|..++ +.+. | +.+|+++.||+||+|+++.. +.+ +.-.+.+
T Consensus 429 ~~~v~GG~~~Li~aLa~~L-----~I~ln~~V~~I~~~~-dgV~-V-~~~G~~~~AD~VIvTvPl~v-Lk~~~I~F~P~L 499 (808)
T PLN02328 429 HCFIPGGNDTFVRELAKDL-----PIFYERTVESIRYGV-DGVI-V-YAGGQEFHGDMVLCTVPLGV-LKKGSIEFYPEL 499 (808)
T ss_pred EEEECCcHHHHHHHHHhhC-----CcccCCeeEEEEEcC-CeEE-E-EeCCeEEEcCEEEECCCHHH-HhhcccccCCCC
Confidence 4478899999999998755 399999999999977 4443 4 45777899999999877776 342 2223458
Q ss_pred ChHHHHHhhccCCCCCeEEEeeecCCCCccccccCCCCCCCCCcceEEEECCCCHHHHHHHHHHHHcCCCCCCCeEEEEe
Q 048009 307 PDDFILSIKHSDYSSGTTKINLAVDKLPQFQCCKLSHPDPGPQHVGTIHIGSESMEEIHSACQEAVNGLPSRRPIIEMTI 386 (531)
Q Consensus 307 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (531)
|+.+.+.|+++.| ..+.++++.++++ || +......|.+.-+.. .+| .+ ..+
T Consensus 500 P~~K~~AI~~l~y-G~~~KV~L~F~~~--FW-------~~~~d~fG~l~~d~s------------~rG-----~~--~lf 550 (808)
T PLN02328 500 PQRKKDAIQRLGY-GLLNKVALLFPYN--FW-------GGEIDTFGHLTEDPS------------MRG-----EF--FLF 550 (808)
T ss_pred CHHHHHHHHcCCC-cceEEEEEEeCCc--cc-------cCCCCceEEEeecCC------------CCc-----eE--EEE
Confidence 9999999999999 6889999999874 22 110111122211000 011 11 112
Q ss_pred CCCCCCCCCCCCceEEEEEeccccCCCCCCCCCChHHHHHHHHHHHHHHHHhCC-------CCCCceeEEEecCcchHHH
Q 048009 387 PSVLDKTISPPGNHVINLFIQYTPYKPSDGSWMDPAYRDSFANRCFSLIDEYAP-------GFSSSIIGYDMLTPPDLER 459 (531)
Q Consensus 387 ~s~~d~~~ap~G~~~l~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~~~~P-------~~~~~i~~~~~~tp~~~~~ 459 (531)
++.. .+.|..++..++.. ++.. .+.. ...+++.+.+++.|.++++ .....+...|...|.++..
T Consensus 551 ~s~s----~~~G~~vLvafv~G-~~A~---~~e~-lsdeE~v~~vL~~Lr~ifgp~~~~vp~P~~~~vtrW~~DP~s~GS 621 (808)
T PLN02328 551 YSYS----SVSGGPLLIALVAG-DAAV---KFET-LSPVESVKRVLQILRGIFHPKGIVVPDPVQAVCTRWGKDCFTYGS 621 (808)
T ss_pred ecCC----CCCCCcEEEEEecC-hhhH---HHhc-CCHHHHHHHHHHHHHHHhCcccccccCcceEEEecCCCCCCcCCC
Confidence 2211 12355666666532 1110 1111 1236788889999988874 2233444444444444433
Q ss_pred HhCCCCCcccccCCCccccccCCCCCCCCCCCCCC--CCeeecCCCCCC--CCCcCCc--hHHHHHHHHHHHhhhh
Q 048009 460 EIGLTGGNIFHGAMGLDSLFLMRPVKGWSNYRTPL--QGLYMCGSGTHP--GGGVMGA--PGRNAAGIVLQDLKKS 529 (531)
Q Consensus 460 ~~~~~~G~~~~~~~~~~~~~~~rp~~~~~~~~t~~--~~ly~aG~~~~~--g~g~~~~--sg~~aa~~i~~~~~~~ 529 (531)
|.....|.. ....+ ....|+ .+|||||++|.. .+.++|| ||..||+.|++.+++.
T Consensus 622 YS~~~pG~~----------~~~~~-----~LaePv~~GRL~FAGEaTs~~~~GtVhGAi~SGlRAA~eIl~~~~~~ 682 (808)
T PLN02328 622 YSYVAVGSS----------GDDYD-----ILAESVGDGRVFFAGEATNKQYPATMHGAFLSGMREAANILRVARRR 682 (808)
T ss_pred CCCCCCCCc----------hhHHH-----HHhccCCCCCEEEEEhhHhCCCCeEhHHHHHHHHHHHHHHHHHHhhc
Confidence 322111110 00000 112233 479999999964 2466788 9999999999977654
No 23
>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]
Probab=99.93 E-value=2.1e-23 Score=195.54 Aligned_cols=257 Identities=17% Similarity=0.162 Sum_probs=150.0
Q ss_pred ccCchHHHHHHHHHHHHHc----C--cEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChHhHHhh----cC
Q 048009 232 VEGGMGSVSMAIGSAAREA----G--AHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYKTFMD----LV 301 (531)
Q Consensus 232 ~~gG~~~l~~~l~~~~~~~----G--~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~~~~~~----ll 301 (531)
..-|...+.+.|.+.+.+. | .+++++++|.+|..++.+.+. |++.||+.+.||+||++.....+ .+ |+
T Consensus 218 ~~kGy~~iL~~l~~~~p~~~i~~~~~~~~~~~~rv~~I~~~~~~~v~-l~c~dg~v~~adhVIvTvsLGvL-k~~h~~lF 295 (498)
T KOG0685|consen 218 NKKGYKRILKLLMAVIPAQNIELGLWKRIHLNTRVENINWKNTGEVK-LRCSDGEVFHADHVIVTVSLGVL-KEQHHKLF 295 (498)
T ss_pred chhHHHHHHHHHhccCCCcchhcCchhhhcccccceeeccCCCCcEE-EEEeCCcEEeccEEEEEeechhh-hhhhhhhc
Confidence 3445666777666644322 2 356677999999998656665 99999999999999998776653 33 44
Q ss_pred CCCCCChHHHHHhhccCCCCCeEEEeeecCCCCccccccCCCCCCCCCcceEEEECCCCHHHHHHHHHHHHcCCCCCCCe
Q 048009 302 PGNILPDDFILSIKHSDYSSGTTKINLAVDKLPQFQCCKLSHPDPGPQHVGTIHIGSESMEEIHSACQEAVNGLPSRRPI 381 (531)
Q Consensus 302 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (531)
.+++|..+.++|+++.+ .++.++||.+++++ |+ .. ....-.++. +.+..++...- +. +.++..
T Consensus 296 -~P~LP~~K~~AIe~lgf-Gtv~KiFLE~E~pf-wp-------~~-~~~i~~lw~-~e~l~e~r~~~-~~----w~~~~~ 358 (498)
T KOG0685|consen 296 -VPPLPAEKQRAIERLGF-GTVNKIFLEFEEPF-WP-------SD-WNGIQLLWL-DEDLEELRSTL-DA----WEEDIM 358 (498)
T ss_pred -CCCCCHHHHHHHHhccC-CccceEEEEccCCC-CC-------CC-CceeEEEEe-cCcHHHHhhhh-HH----HHhhce
Confidence 45699999999999999 78999999999864 31 10 111112333 33333332211 11 111121
Q ss_pred EEEEeCCCCCCCCCCCCceEEEEEeccccCCCCCCCCCChHHHHHHHHHHHHHHHHh-----CCCCCCceeEEEecCcch
Q 048009 382 IEMTIPSVLDKTISPPGNHVINLFIQYTPYKPSDGSWMDPAYRDSFANRCFSLIDEY-----APGFSSSIIGYDMLTPPD 456 (531)
Q Consensus 382 ~~~~~~s~~d~~~ap~G~~~l~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~~~-----~P~~~~~i~~~~~~tp~~ 456 (531)
...+.. .+| ++|..++.. +-....++.++ |++.+.+...+.++ +|..+..+...+...|.+
T Consensus 359 --~f~~v~----~~~---~vL~gWiaG-~~~~~me~lsd----Eev~e~~~~~lr~fl~n~~iP~p~kilRs~W~snp~f 424 (498)
T KOG0685|consen 359 --GFQPVS----WAP---NVLLGWIAG-REARHMETLSD----EEVLEGLTKLLRKFLKNPEIPKPKKILRSQWISNPFF 424 (498)
T ss_pred --EEEEcC----cch---hhhheeccC-CcceehhhCCH----HHHHHHHHHHHHHhcCCCCCCCchhhhhhcccCCCcc
Confidence 222211 222 445444321 11111123454 44555555555544 455666666777777777
Q ss_pred HHHHhCCCCCcccccCCCccccccCCCCCCCCCCCCCCCCeeecCCCCCC--CCCcCCc--hHHHHHHHHHHHhhh
Q 048009 457 LEREIGLTGGNIFHGAMGLDSLFLMRPVKGWSNYRTPLQGLYMCGSGTHP--GGGVMGA--PGRNAAGIVLQDLKK 528 (531)
Q Consensus 457 ~~~~~~~~~G~~~~~~~~~~~~~~~rp~~~~~~~~t~~~~ly~aG~~~~~--g~g~~~~--sg~~aa~~i~~~~~~ 528 (531)
-.+|.-...|+.-. ....+..-.|. ...++=|.+-|||+.||- -.-++|| ||++.|+++++.+..
T Consensus 425 rGSYSY~svgs~~~---d~~~~a~p~p~----~~~~~~p~I~FAGEaThr~~YsTthGA~~SG~REA~RL~~~y~~ 493 (498)
T KOG0685|consen 425 RGSYSYRSVGSDGS---DTGALALPLPL----TLVTGRPQILFAGEATHRTFYSTTHGAVLSGWREADRLLEHYES 493 (498)
T ss_pred CceeeEeecccccc---ccchhhccCCc----cccCCCceEEEccccccccceehhhhhHHhhHHHHHHHHHHHHh
Confidence 76665444443321 11211122331 223445789999999964 2345687 999999999986654
No 24
>PLN03000 amine oxidase
Probab=99.93 E-value=3.6e-23 Score=213.27 Aligned_cols=237 Identities=14% Similarity=0.131 Sum_probs=142.3
Q ss_pred cccccCchHHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChHhHHh--hcCCCCCC
Q 048009 229 WSYVEGGMGSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYKTFM--DLVPGNIL 306 (531)
Q Consensus 229 ~~~~~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~~~~~--~ll~~~~~ 306 (531)
+..++||++.|+++|++.+ .|++++.|++|..++ +.+. |++.+ +++.||+||+|+++.. +. .+.-.+.+
T Consensus 373 ~~~v~GG~~~LieaLa~~L-----~I~Ln~~Vt~I~~~~-dgV~-V~~~~-~~~~AD~VIvTVPlgV-Lk~~~I~F~PpL 443 (881)
T PLN03000 373 HCFLPGGNGRLVQALAENV-----PILYEKTVQTIRYGS-NGVK-VIAGN-QVYEGDMVLCTVPLGV-LKNGSIKFVPEL 443 (881)
T ss_pred eEEeCCCHHHHHHHHHhhC-----CcccCCcEEEEEECC-CeEE-EEECC-cEEEeceEEEcCCHHH-HhhCceeeCCCC
Confidence 4468899999999998765 399999999999887 5544 66554 4699999999877766 45 23334559
Q ss_pred ChHHHHHhhccCCCCCeEEEeeecCCCCccccccCCCCCCCCCcceEEEECCCCHHHHHHHHHHHHcCCCCCCCeEEEEe
Q 048009 307 PDDFILSIKHSDYSSGTTKINLAVDKLPQFQCCKLSHPDPGPQHVGTIHIGSESMEEIHSACQEAVNGLPSRRPIIEMTI 386 (531)
Q Consensus 307 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (531)
|+++.+.|+++.| ..+.++++.++++ || +......|.+.-... .+.. +..+
T Consensus 444 P~~K~~AI~rL~~-G~l~KViL~Fd~~--FW-------~~d~~~FG~l~~~~~------------------~rg~-~~~f 494 (881)
T PLN03000 444 PQRKLDCIKRLGF-GLLNKVAMLFPYV--FW-------STDLDTFGHLTEDPN------------------YRGE-FFLF 494 (881)
T ss_pred CHHHHHHHHcCCC-cceEEEEEEeCCc--cc-------cCCCCceeEEecCCC------------------CCce-eEEE
Confidence 9999999999999 6899999999885 33 111111122211000 0011 1122
Q ss_pred CCCCCCCCCC-CCceEEEEEeccccCCCCCCCCCChHHHHHHHHHHHHHHHHhCCC--C-----CCceeEEEecCcchHH
Q 048009 387 PSVLDKTISP-PGNHVINLFIQYTPYKPSDGSWMDPAYRDSFANRCFSLIDEYAPG--F-----SSSIIGYDMLTPPDLE 458 (531)
Q Consensus 387 ~s~~d~~~ap-~G~~~l~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~~~~P~--~-----~~~i~~~~~~tp~~~~ 458 (531)
.+ +.| .|..+|..++...... .|+. ...+++.+.+++.|.++++. . ...+...|...|.+..
T Consensus 495 ~s-----~sp~~G~pVLvafv~Gd~A~----~le~-lSdeE~ve~vl~~Lrkifg~~~~~vp~Pv~~ivtrW~~DPysrG 564 (881)
T PLN03000 495 YS-----YAPVAGGPLLIALVAGEAAH----KFET-MPPTDAVTRVLHILRGIYEPQGINVPDPLQTVCTRWGGDPFSLG 564 (881)
T ss_pred eC-----CCCCCCCcEEEEEecCchhH----Hhhc-CCHHHHHHHHHHHHHHHhCccccccCCceEEEEccCCCCCCCCc
Confidence 22 223 3556676665422111 1221 12478899999999998852 1 2233333333333332
Q ss_pred HHhCCCCCcccccCCCccccccCCCCCCCCCCCCCC--CCeeecCCCCCC--CCCcCCc--hHHHHHHHHHHHhhh
Q 048009 459 REIGLTGGNIFHGAMGLDSLFLMRPVKGWSNYRTPL--QGLYMCGSGTHP--GGGVMGA--PGRNAAGIVLQDLKK 528 (531)
Q Consensus 459 ~~~~~~~G~~~~~~~~~~~~~~~rp~~~~~~~~t~~--~~ly~aG~~~~~--g~g~~~~--sg~~aa~~i~~~~~~ 528 (531)
.|....-| +....+. ....|+ .+|||||+.|.. .+.++|| ||++||++|+..++.
T Consensus 565 SYS~~~pG----------~~~~~~d-----~LaePv~~GRIfFAGEaTs~~~~GTVhGAieSGlRAA~eIl~~l~~ 625 (881)
T PLN03000 565 SYSNVAVG----------ASGDDYD-----ILAESVGDGRLFFAGEATTRRYPATMHGAFVTGLREAANMAQSAKA 625 (881)
T ss_pred cccCCCCC----------CchHHHH-----HHhCcCCCCcEEEeehHHhCCCCeeHHHHHHHHHHHHHHHHHHhhh
Confidence 22211111 1100000 223454 479999999953 2456788 999999999987654
No 25
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=99.92 E-value=3.3e-25 Score=225.08 Aligned_cols=238 Identities=29% Similarity=0.416 Sum_probs=139.1
Q ss_pred ccCchHHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChHhHHh-hcCCCCCCChHH
Q 048009 232 VEGGMGSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYKTFM-DLVPGNILPDDF 310 (531)
Q Consensus 232 ~~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~~~~~-~ll~~~~~~~~~ 310 (531)
..|+...+ +...+...|++|++|++|++|..++ +++. |.+.||+++.||+||+|+++..+.. .+.+ .++...
T Consensus 207 ~~g~~~~~---~~~~~~~~g~~i~l~~~V~~I~~~~-~~v~-v~~~~g~~~~ad~VI~a~p~~~l~~i~~~p--~l~~~~ 279 (450)
T PF01593_consen 207 GMGGLSLA---LALAAEELGGEIRLNTPVTRIERED-GGVT-VTTEDGETIEADAVISAVPPSVLKNILLLP--PLPEDK 279 (450)
T ss_dssp ETTTTHHH---HHHHHHHHGGGEESSEEEEEEEEES-SEEE-EEETTSSEEEESEEEE-S-HHHHHTSEEES--TSHHHH
T ss_pred cccchhHH---HHHHHhhcCceeecCCcceeccccc-cccc-cccccceEEecceeeecCchhhhhhhhhcc--cccccc
Confidence 34444443 3344556678999999999999998 7765 8899999999999999988888532 3333 377767
Q ss_pred HHHhhccCCCCCeEEEeeecCCCCccccccCCCCCCCCCcceEEEECCCCHHHHHHHHHHHHcCCCCCCCeEEEEeCCCC
Q 048009 311 ILSIKHSDYSSGTTKINLAVDKLPQFQCCKLSHPDPGPQHVGTIHIGSESMEEIHSACQEAVNGLPSRRPIIEMTIPSVL 390 (531)
Q Consensus 311 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 390 (531)
.+.++.+.+ .+..++++.++...-.. .....+.+..+. ..+..++..++..
T Consensus 280 ~~a~~~~~~-~~~~~v~l~~~~~~~~~---------~~~~~~~~~~~~-------------------~~~~~~~~~~~~~ 330 (450)
T PF01593_consen 280 RRAIENLPY-SSVSKVFLGFDRPFWPP---------DIDFFGILYSDG-------------------FSPIGYVSDPSKF 330 (450)
T ss_dssp HHHHHTEEE-EEEEEEEEEESSGGGGS---------TTTESEEEEESS-------------------TSSEEEEEEECCT
T ss_pred ccccccccc-CcceeEEEeeecccccc---------cccccceecccC-------------------ccccccccccccC
Confidence 778888877 67779999998753210 001222333311 1244456666655
Q ss_pred CCCCCCCCceEEEEEeccccCCCCCCCCCChHHHHHHHHHHHHHHHHhCCCCCCceeEEEecCcchHHHHhCCCCCcccc
Q 048009 391 DKTISPPGNHVINLFIQYTPYKPSDGSWMDPAYRDSFANRCFSLIDEYAPGFSSSIIGYDMLTPPDLEREIGLTGGNIFH 470 (531)
Q Consensus 391 d~~~ap~G~~~l~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~~~~P~~~~~i~~~~~~tp~~~~~~~~~~~G~~~~ 470 (531)
++. ++..++..++. .+.. ..|.+ ..++++.+.++++|++++|. .......++ +...|.+. ..+.|++..
T Consensus 331 ~~~---~~~~~l~~~~~-~~~~---~~~~~-~~~e~~~~~~~~~L~~~~~~-~~~~~~~~~-~~~~w~~~-~~~~~~~~~ 399 (450)
T PF01593_consen 331 PGR---PGGGVLTSYVG-GPDA---PEWDD-LSDEEILERVLDDLRKILPG-ASIPDPIDI-TVTRWSRD-PYPRGSYSY 399 (450)
T ss_dssp TSC---TTSEEEEEEEE-HHHH---HHHTT-SCHHHHHHHHHHHHHHHHTT-GGGGEESEE-EEEECTTS-TTTSSSCEC
T ss_pred ccc---ccCCcceeeee-cccc---chhcc-cchhhhHHHHHHHhhhcccc-ccccccccc-cccccccc-ccccccccc
Confidence 444 34455554432 2211 01221 13488999999999999985 111111111 11122221 111222111
Q ss_pred cCCCccccccCCCCCCCCCCCCCC-CCeeecCCCCCCC--CCcCCc--hHHHHHHHHH
Q 048009 471 GAMGLDSLFLMRPVKGWSNYRTPL-QGLYMCGSGTHPG--GGVMGA--PGRNAAGIVL 523 (531)
Q Consensus 471 ~~~~~~~~~~~rp~~~~~~~~t~~-~~ly~aG~~~~~g--~g~~~~--sg~~aa~~i~ 523 (531)
...... ...++ ..++|+ +||||||+|++++ +++++| ||+.||++|+
T Consensus 400 ~~~~~~--~~~~~-----~~~~~~~~~l~~aG~~~~~~~~~~~~gA~~sG~~aA~~il 450 (450)
T PF01593_consen 400 FPPGQS--SQFRP-----ALRTPIDPGLYFAGDWTSPGYPGGIEGAILSGRRAAEEIL 450 (450)
T ss_dssp HCTTHH--HHHHH-----HHHSCBTTTEEE-SGGGSSSSTTSHHHHHHHHHHHHHHHH
T ss_pred cccccc--ccccc-----cccCCcceEEEEeecccCCCCCCcHHHHHHHHHHHHHHhC
Confidence 111111 01232 445677 6999999999987 788988 9999999986
No 26
>PLN02976 amine oxidase
Probab=99.91 E-value=3.1e-22 Score=211.58 Aligned_cols=240 Identities=17% Similarity=0.117 Sum_probs=143.3
Q ss_pred cccccCchHHHHHHHHHHHHHcCcEEEcCcceeEEEecC---------CCceeEEEeCCCcEEEcCeEEecCChHhHHh-
Q 048009 229 WSYVEGGMGSVSMAIGSAAREAGAHIVTRAEVSQLMIND---------SGRVNGVQLADGAQVHSSIVLSNATPYKTFM- 298 (531)
Q Consensus 229 ~~~~~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~---------~g~~~~V~~~~g~~~~ad~VV~aa~~~~~~~- 298 (531)
...+.||++.|+++|++.+ .|++|++|++|.... ++.| .|++.+|+++.||+||+|+++..+..
T Consensus 928 ~~rIkGGYqqLIeALAe~L-----~IrLNtpVtrId~s~~d~~~~~s~~dGV-tVtTsDGetftADaVIVTVPLGVLKag 1001 (1713)
T PLN02976 928 HCMIKGGYSNVVESLAEGL-----DIHLNHVVTDVSYGSKDAGASGSSRKKV-KVSTSNGSEFLGDAVLITVPLGCLKAE 1001 (1713)
T ss_pred eEEeCCCHHHHHHHHHhhC-----CeecCCeEEEEEecCCcccccccCCCcE-EEEECCCCEEEeceEEEeCCHHHhhhc
Confidence 3368999999999998754 499999999999841 1334 48888998899999999887776321
Q ss_pred hcCCCCCCChHHHHHhhccCCCCCeEEEeeecCCCCccccccCCCCCCCCCcceEEEECCCCHHHHHHHHHHHHcCCCCC
Q 048009 299 DLVPGNILPDDFILSIKHSDYSSGTTKINLAVDKLPQFQCCKLSHPDPGPQHVGTIHIGSESMEEIHSACQEAVNGLPSR 378 (531)
Q Consensus 299 ~ll~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (531)
.+.-.+.||.....+|..+.+ ..+.++++.|+++ || +......|... . . ...
T Consensus 1002 ~I~FsPPLPe~KqaAIqrLgf-G~lnKV~LeFdrp--FW-------~~d~d~FG~s~---e--------------d-tdl 1053 (1713)
T PLN02976 1002 TIKFSPPLPDWKYSSIQRLGF-GVLNKVVLEFPEV--FW-------DDSVDYFGATA---E--------------E-TDL 1053 (1713)
T ss_pred ccccCCcccHHHHHHHHhhcc-ccceEEEEEeCCc--cc-------cCCCCcccccc---c--------------c-CCC
Confidence 243445699988889999988 7889999999874 33 10001111000 0 0 001
Q ss_pred CCeEEEEeCCCCCCCCCCCCceEEEEEeccccCCCCCCCCCChHHHHHHHHHHHHHHHHhCCC-----CCCceeEEEecC
Q 048009 379 RPIIEMTIPSVLDKTISPPGNHVINLFIQYTPYKPSDGSWMDPAYRDSFANRCFSLIDEYAPG-----FSSSIIGYDMLT 453 (531)
Q Consensus 379 ~~~~~~~~~s~~d~~~ap~G~~~l~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~~~~P~-----~~~~i~~~~~~t 453 (531)
...++..++ ...|.|..+|..++...... ....+. .+++.+.+++.|.+++++ ....+...|...
T Consensus 1054 rG~~~~~wn-----lr~psG~pVLVafv~G~aAr-eiEsLS----DEE~Ve~ALe~LrKlFG~~~iPdPv~~vvTrWssD 1123 (1713)
T PLN02976 1054 RGQCFMFWN-----VKKTVGAPVLIALVVGKAAI-DGQSMS----SSDHVNHALMVLRKLFGEALVPDPVASVVTDWGRD 1123 (1713)
T ss_pred CceEEEecc-----CCCCCCCCEEEEEeccHhHH-HHhhCC----HHHHHHHHHHHHHHHcCcccccCcceeEEecCCCC
Confidence 112223222 12334556666654321110 000222 367889999999999873 223333444444
Q ss_pred cchHHHHhCCCCCcccccCCCccccccCCCCCCCCCCCCCCCC-eeecCCCCCC--CCCcCCc--hHHHHHHHHHHHhh
Q 048009 454 PPDLEREIGLTGGNIFHGAMGLDSLFLMRPVKGWSNYRTPLQG-LYMCGSGTHP--GGGVMGA--PGRNAAGIVLQDLK 527 (531)
Q Consensus 454 p~~~~~~~~~~~G~~~~~~~~~~~~~~~rp~~~~~~~~t~~~~-ly~aG~~~~~--g~g~~~~--sg~~aa~~i~~~~~ 527 (531)
|.+...|...+-|. ....+. ....|+.| |||||+.|.+ .+.++|| ||++||++|+..+.
T Consensus 1124 PySrGSYSy~~PGs----------~~~d~d-----~LAePVggRLFFAGEATS~~~pGTVHGAIeSG~RAA~eIL~~L~ 1187 (1713)
T PLN02976 1124 PFSYGAYSYVAIGA----------SGEDYD-----ILGRPVENCLFFAGEATCKEHPDTVGGAMMSGLREAVRIIDILN 1187 (1713)
T ss_pred CCcCccccCCCCCC----------CchHHH-----HHhCCCCCcEEEEehhhhCCCcchHHHHHHHHHHHHHHHHHHHH
Confidence 44433321111111 000000 22346666 9999998854 2456788 99999999998774
No 27
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=99.91 E-value=5.1e-23 Score=197.41 Aligned_cols=435 Identities=16% Similarity=0.128 Sum_probs=233.7
Q ss_pred CcEEEECCChhHHHHHHHHHHcCCcEEEEccCCCCCceeecccccCCeeecccchhhhcchhhhhhc----Ccccccchh
Q 048009 18 WDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAVTEELIPGFKFSRCSYLQSLLRPSLIKC----GTRIGETWN 93 (531)
Q Consensus 18 ~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~GG~~~s~~~~~g~~~d~g~~~~~~~~~~~~~~----gl~~~~~~~ 93 (531)
++|+|+|||+|||+||++|+++|++|+|+|+++++||.+.++..-.|...+.|-|+|...+++++.. +........
T Consensus 1 ~rVai~GaG~AgL~~a~~La~~g~~vt~~ea~~~~GGk~~s~~~~dg~~~E~glh~f~~~Y~n~~~ll~~~~~~~~~~~~ 80 (485)
T COG3349 1 MRVAIAGAGLAGLAAAYELADAGYDVTLYEARDRLGGKVASWRDSDGNHVEHGLHVFFGCYYNLLTLLKELPIEDRLQLR 80 (485)
T ss_pred CeEEEEcccHHHHHHHHHHHhCCCceEEEeccCccCceeeeeecCCCCeeeeeeEEechhHHHHHHHhhhCCchheeehH
Confidence 4899999999999999999999999999999999999999998888999999999999999988776 211111111
Q ss_pred hhc----cchh-hhHHHHHHHHHH-HHHHHHHHhhcCCCcccccCCCcchhhhhhhhhhhhhHHHHHHHHHhcChh---h
Q 048009 94 EVV----EAKS-IIVYAIFEDQLD-KFSQFVDLLFDSSPPELLQGSSSYSHQFKNKIRNSAFWAHCLRRAISLGQK---D 164 (531)
Q Consensus 94 ~~~----~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~ 164 (531)
+.. ...+ ...+.++..... .-......++... ............+.... .
T Consensus 81 ~~~~~~~~~~~~~g~~~~~~~~~~p~p~~~~~~~l~~~---------------------~~~~~~~~~~~~~l~~~~~g~ 139 (485)
T COG3349 81 EHTKTFVGSGTRPGAIGRFARPDAPQPTNGLKAFLRLP---------------------QLPRREKIRFVLRLGDAPIGA 139 (485)
T ss_pred hhhhhhcccCCCCCcccccccCCCCCcchhhhhhhhcc---------------------ccCHHHHhHHhhccccccchh
Confidence 000 0000 000000000000 0000000000000 00011111111111111 3
Q ss_pred HHHHHHHHhccHHHHhhcccC-ChhHHHHHhhhhhhccCCCCCCCChHH--HHHHHHhhccCCCCCccccccCchH-HHH
Q 048009 165 LVEFVDLLLSPASKVLNKWFE-TDVLKATLATDAVIGTMSSVHTPGSGY--VLLHHVMGETDGNPGIWSYVEGGMG-SVS 240 (531)
Q Consensus 165 ~~~~~~~~~~~~~~~l~~~~~-~~~l~~~~~~~~~~g~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~gG~~-~l~ 240 (531)
...+.++...++.+|+.+.-. ....++.+....+.+.+..+....+.. ..+..++-.. .........+|++. .+.
T Consensus 140 ~~~~~eld~~s~~d~l~~~g~~~~~~k~~~~~~~~~l~f~~~e~~sa~~~lt~~~~~~~~~-~~~~i~~~~~g~~~E~~~ 218 (485)
T COG3349 140 DRSLRELDKISFADWLKEKGAREGAYKAAFAPIALALTFIDPEGCSARFFLTILNLFLIVT-LEASILRNLRGSPDEVLL 218 (485)
T ss_pred HHHHHHHhcccHHHHHHHhCCCchhHHHHHHHHHHhhcccCcccCcchhHHHHHHHHHHhc-cCcchhhhhcCCCcceee
Confidence 556677788999999987443 333445554333333332333222211 1111111111 01111124455554 478
Q ss_pred HHHHHHHHHcCcEEEcCcceeEEEecC---CCceeEEEeCCCcEE---EcCeEEecCChHhHHhhcCCCCCCChHHHHHh
Q 048009 241 MAIGSAAREAGAHIVTRAEVSQLMIND---SGRVNGVQLADGAQV---HSSIVLSNATPYKTFMDLVPGNILPDDFILSI 314 (531)
Q Consensus 241 ~~l~~~~~~~G~~i~~~~~V~~I~~~~---~g~~~~V~~~~g~~~---~ad~VV~aa~~~~~~~~ll~~~~~~~~~~~~i 314 (531)
..+.+.+.+.|.+++++..|.+|..+. ..+++++.+. +... .++.++.+.+... +...++....+......+
T Consensus 219 ~p~~~yi~~~G~~v~~~~pv~~l~l~~~~~~~~~~g~~~~-~~~~e~~~~~~~~~~~~v~~-~~~~~ps~W~~~~~f~~l 296 (485)
T COG3349 219 QPWTEYIPERGRKVHADYPVKELDLDGARGLAKVTGGDVT-GPEQEQQAALAVVDAFAVQR-FKRDLPSEWPKWSNFDGL 296 (485)
T ss_pred ehhhhhccccCceeeccceeeeeeccccccccceEeeeec-CcceEeeehhhhhcccccch-HhhcCccccccccccccc
Confidence 888999999999999999999998754 2457777777 4433 4455666555555 355555543334455555
Q ss_pred hccCCCCCeEEEeeecCCCCccccccCCCCCCCCCcceEEEECCCCHHHHHHHHHHHHcCCCCCCCeEEEEeCCCCCCCC
Q 048009 315 KHSDYSSGTTKINLAVDKLPQFQCCKLSHPDPGPQHVGTIHIGSESMEEIHSACQEAVNGLPSRRPIIEMTIPSVLDKTI 394 (531)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~d~~~ 394 (531)
...+. ..+.++++.++..+....+ ..+ ..++++.. +. .......+.-.+.. .+.+
T Consensus 297 y~l~~-~p~~~~~l~~~~~~~~~~~--------~~~--~~~~dn~~-------~s------~~~l~~~~ad~~~~-~~~y 351 (485)
T COG3349 297 YGLRL-VPVITLHLRFDGWVTELTD--------RNQ--QFGIDNLL-------WS------DDTLGGVVADLALT-SPDY 351 (485)
T ss_pred ccccc-cceeEEEEeecCccccccc--------cch--hhhhhccc-------cc------cccCCceeeecccc-chhh
Confidence 55444 6788888888864322100 001 11111000 00 00111112222221 1234
Q ss_pred CCCCceE-EEEEeccccCCCCCCCCCChHHHHHHHHHHHHHHHHhCCCCC-CceeEEEecCcchHHHHhCCCCCcccccC
Q 048009 395 SPPGNHV-INLFIQYTPYKPSDGSWMDPAYRDSFANRCFSLIDEYAPGFS-SSIIGYDMLTPPDLEREIGLTGGNIFHGA 472 (531)
Q Consensus 395 ap~G~~~-l~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~~~~P~~~-~~i~~~~~~tp~~~~~~~~~~~G~~~~~~ 472 (531)
+.+|..+ +...+ .|.. .|.. +..+++.....++++..+|... ..+....+.++.-.-. ..
T Consensus 352 ~e~g~~~~le~~~--~~~~----~~~~-~~~~~~~a~~e~~~~~~vP~~~~a~~~~~~i~~~q~~~~-----------~~ 413 (485)
T COG3349 352 VEPGAGCYLEKVL--APGW----PFLF-ESDEAIVATFEKELYELVPSLAEAKLKSSVLVNQQSLYG-----------LA 413 (485)
T ss_pred ccccchhhhhhhh--cccc----cccc-cchhhHHHHHHHHhhhcCCchhcccccccceeccccccc-----------cC
Confidence 4444421 11111 1111 2322 2457888899999998888664 3333333333333221 11
Q ss_pred CCccccccCCCCCCCCCCCCCCCCeeecCCCC-CCCCCc-CCc--hHHHHHHHHHHHhh
Q 048009 473 MGLDSLFLMRPVKGWSNYRTPLQGLYMCGSGT-HPGGGV-MGA--PGRNAAGIVLQDLK 527 (531)
Q Consensus 473 ~~~~~~~~~rp~~~~~~~~t~~~~ly~aG~~~-~~g~g~-~~~--sg~~aa~~i~~~~~ 527 (531)
+. ....|| +..||++|++++||++ .+..+. +++ ||+.||+.|+..++
T Consensus 414 pg---s~~~rP-----~~~Tpv~N~~laGd~~~~~~~~smE~A~~sGl~AA~~v~~~~~ 464 (485)
T COG3349 414 PG---SYHYRP-----EQKTPIPNLLLAGDYTKQPYLGSMEGATLSGLLAANAILDNLG 464 (485)
T ss_pred CC---ccccCC-----CCCCCccchhhccceeecCCcCccchhhhhHHHHHHHHHHhhh
Confidence 11 124788 8899999999999999 444333 455 99999999997654
No 28
>TIGR03467 HpnE squalene-associated FAD-dependent desaturase. The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.
Probab=99.91 E-value=6.3e-23 Score=206.41 Aligned_cols=399 Identities=18% Similarity=0.195 Sum_probs=203.8
Q ss_pred HHHHHHHHcCCcEEEEccCCCCCceeecccccCCe--eecccchhhhcchhhhhhc----Ccccccchh--hhc--cchh
Q 048009 31 TAAAYLARAGLSVAVLERRHVIGGAAVTEELIPGF--KFSRCSYLQSLLRPSLIKC----GTRIGETWN--EVV--EAKS 100 (531)
Q Consensus 31 ~aA~~L~~~G~~V~v~E~~~~~GG~~~s~~~~~g~--~~d~g~~~~~~~~~~~~~~----gl~~~~~~~--~~~--~~~~ 100 (531)
+||++|+++|++|+|+|+++++||++.+.. .+|+ .+|.|++++....+.+.+. |+....... .+. ....
T Consensus 1 ~AA~~L~~~G~~v~vlEa~~~~GG~~~t~~-~~g~~~~~d~G~~~~~~~~~~~~~l~~~lgl~~~~~~~~~~~~~~~~~~ 79 (419)
T TIGR03467 1 SAAVELARAGARVTLFEARPRLGGRARSFE-DGGLGQTIDNGQHVLLGAYTNLLALLRRIGAEPRLQGPRLPLPFYDPGG 79 (419)
T ss_pred ChHHHHHhCCCceEEEecCCCCCCceeEee-cCCCCcceecCCEEEEcccHHHHHHHHHhCCchhhhcccCCcceecCCC
Confidence 589999999999999999999999999986 5554 4999998876655654443 332111000 000 0000
Q ss_pred hh-HHHHHHHHHHHHHHHHHHhhcCCCcccccCCCcchhhhhhhhhhhhhHHHHHHHHHhcChhhHHHHHHHHhccHHHH
Q 048009 101 II-VYAIFEDQLDKFSQFVDLLFDSSPPELLQGSSSYSHQFKNKIRNSAFWAHCLRRAISLGQKDLVEFVDLLLSPASKV 179 (531)
Q Consensus 101 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (531)
.. .+. ......++ .....+..... +....+ ..+ ...+....... .......++.++
T Consensus 80 ~~~~~~-~~~~~~p~-~~~~~~~~~~~---------l~~~~~-----~~~-~~~~~~~~~~~------~~~~~~~s~~~~ 136 (419)
T TIGR03467 80 RLSRLR-LSRLPAPL-HLARGLLRAPG---------LSWADK-----LAL-ARALLALRRTR------FRALDDTTVGDW 136 (419)
T ss_pred Cceeec-CCCCCCCH-HHHHHHhcCCC---------CCHHHH-----HHH-HHHHHHHHhcC------ccccCCCCHHHH
Confidence 00 000 00000000 00000000000 000000 000 00000000000 012245788899
Q ss_pred hhcccCChhHHHHHhhhhhhccCC-CCCCCChHHHHHH--HHhhccCCCCCccccccCchHHHH-HHHHHHHHHcCcEEE
Q 048009 180 LNKWFETDVLKATLATDAVIGTMS-SVHTPGSGYVLLH--HVMGETDGNPGIWSYVEGGMGSVS-MAIGSAAREAGAHIV 255 (531)
Q Consensus 180 l~~~~~~~~l~~~~~~~~~~g~~~-~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~gG~~~l~-~~l~~~~~~~G~~i~ 255 (531)
+.+++.++.+...+....+.+.+. .+...+..+.... ..+.... ....+.+|+||+.++. +.|++.+++.|++|+
T Consensus 137 l~~~~~~~~~~~~~~~p~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~-~~~~~~~~~gG~~~~~~~~l~~~l~~~g~~i~ 215 (419)
T TIGR03467 137 LQAAGQSERLIERLWEPLLLSALNTPPERASAALAAKVLRDSFLAGR-AASDLLLPRVPLSELFPEPARRWLDSRGGEVR 215 (419)
T ss_pred HHHcCCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCC-CcceeeeeCCCHHHHHHHHHHHHHHHcCCEEE
Confidence 988765555554333211111111 1221112111111 1111001 1122448999987765 558999999999999
Q ss_pred cCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChHhHHhhcCCCCCCChHHHHHhhccCCCCCeEEEeeecCCCCc
Q 048009 256 TRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYKTFMDLVPGNILPDDFILSIKHSDYSSGTTKINLAVDKLPQ 335 (531)
Q Consensus 256 ~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~~~~~~ll~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 335 (531)
+|++|++|..++ +++..+...+|+++.||+||+|+++.. +.+|++.+ ...+.+++++| .++.++++.++++..
T Consensus 216 ~~~~V~~i~~~~-~~~~~~~~~~g~~~~~d~vi~a~p~~~-~~~ll~~~----~~~~~l~~~~~-~~~~~v~l~~~~~~~ 288 (419)
T TIGR03467 216 LGTRVRSIEANA-GGIRALVLSGGETLPADAVVLAVPPRH-AASLLPGE----DLGALLTALGY-SPITTVHLRLDRAVR 288 (419)
T ss_pred cCCeeeEEEEcC-CcceEEEecCCccccCCEEEEcCCHHH-HHHhCCCc----hHHHHHhhcCC-cceEEEEEEeCCCcC
Confidence 999999999987 655433334677799999999888887 47787541 35567788888 577899999987531
Q ss_pred cccccCCCCCCCCCcceEEEECCCCHHHHHHHHHHHHcCCCCCCCeEEEEeCCCCCCCCCCCCceEEEEEeccccCCCCC
Q 048009 336 FQCCKLSHPDPGPQHVGTIHIGSESMEEIHSACQEAVNGLPSRRPIIEMTIPSVLDKTISPPGNHVINLFIQYTPYKPSD 415 (531)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~d~~~ap~G~~~l~~~~~~~~~~~~~ 415 (531)
.. ....+ .. . .+..++...+ ...+. ...+.+++... . .-
T Consensus 289 ~~----------~~~~~--~~-~--------------------~~~~~~~~~~----~~~~~-~~~~~~~~~~~--~-~~ 327 (419)
T TIGR03467 289 LP----------APMVG--LV-G--------------------GLAQWLFDRG----QLAGE-PGYLAVVISAA--R-DL 327 (419)
T ss_pred CC----------CCeee--ec-C--------------------CceeEEEECC----cCCCC-CCEEEEEEecc--h-hh
Confidence 10 01111 11 0 0111222111 11122 12333332211 0 00
Q ss_pred CCCCChHHHHHHHHHHHHHHHHhCCCCCC-ceeEEEecCcchHHHHhCCCCCcccccCCCccccccCCCCCCCCCCCCCC
Q 048009 416 GSWMDPAYRDSFANRCFSLIDEYAPGFSS-SIIGYDMLTPPDLEREIGLTGGNIFHGAMGLDSLFLMRPVKGWSNYRTPL 494 (531)
Q Consensus 416 ~~~~~~~~k~~~~~~~~~~l~~~~P~~~~-~i~~~~~~tp~~~~~~~~~~~G~~~~~~~~~~~~~~~rp~~~~~~~~t~~ 494 (531)
..|+ ++++.+.+++.|++++|...+ .+.. .+......+ .|....... ..+| ...+|+
T Consensus 328 ~~~~----~e~~~~~~l~~l~~~~~~~~~~~~~~---------~~~~~~~~~-~~~~~~g~~---~~~~-----~~~~~~ 385 (419)
T TIGR03467 328 VDLP----REELADRIVAELRRAFPRVAGAKPLW---------ARVIKEKRA-TFAATPGLN---RLRP-----GARTPW 385 (419)
T ss_pred ccCC----HHHHHHHHHHHHHHhcCccccCCccc---------eEEEEccCC-ccccCCccc---ccCC-----CCCCCc
Confidence 1233 488999999999999986531 1111 111111111 111111111 2344 345788
Q ss_pred CCeeecCCCCCCC--CCcCCc--hHHHHHHHHHH
Q 048009 495 QGLYMCGSGTHPG--GGVMGA--PGRNAAGIVLQ 524 (531)
Q Consensus 495 ~~ly~aG~~~~~g--~g~~~~--sg~~aa~~i~~ 524 (531)
+|||||||+++++ +.+.+| ||..||+.|++
T Consensus 386 ~~l~~aGd~~~~~~~~~~egA~~SG~~aA~~i~~ 419 (419)
T TIGR03467 386 PNLFLAGDWTATGWPATMEGAVRSGYQAAEAVLK 419 (419)
T ss_pred CCEEEecccccCCCcchHHHHHHHHHHHHHHHhC
Confidence 9999999999864 133456 99999999863
No 29
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.91 E-value=5e-22 Score=196.98 Aligned_cols=236 Identities=17% Similarity=0.191 Sum_probs=137.8
Q ss_pred cccCchHHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChHhHHhh--cCCCCCCCh
Q 048009 231 YVEGGMGSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYKTFMD--LVPGNILPD 308 (531)
Q Consensus 231 ~~~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~~~~~~--ll~~~~~~~ 308 (531)
...+|+..+...++. |.+|+++..|..|...+++. ..+++.++..+.+|+||+++....+ .. +...+++|.
T Consensus 213 ~~~~G~~~v~~~la~-----~l~I~~~~~v~~i~~~~~~~-~~~~~~~~~~~~~d~vvvt~pl~vL-k~~~i~F~P~Lp~ 285 (501)
T KOG0029|consen 213 LMKGGYEPVVNSLAE-----GLDIHLNKRVRKIKYGDDGA-VKVTVETGDGYEADAVVVTVPLGVL-KSGLIEFSPPLPR 285 (501)
T ss_pred HhhCCccHHHhhcCC-----CcceeeceeeEEEEEecCCc-eEEEEECCCeeEeeEEEEEccHHHh-ccCceeeCCCCcH
Confidence 567888888888865 89999999999999987454 3466666666999999998777664 33 434567999
Q ss_pred HHHHHhhccCCCCCeEEEeeecCCCCccccccCCCCCCCCCcceEEEECCCCHHHHHHHHHHHHcCCCCCCCeEEEEeCC
Q 048009 309 DFILSIKHSDYSSGTTKINLAVDKLPQFQCCKLSHPDPGPQHVGTIHIGSESMEEIHSACQEAVNGLPSRRPIIEMTIPS 388 (531)
Q Consensus 309 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 388 (531)
++.++|+++.. ..+.++.+-|+.. ||. .... .+...+.... .++. + .+.+
T Consensus 286 ~k~~aI~~lg~-g~~~Kv~l~F~~~--fW~-------~~~d---~fg~~~~~~~---------~~~~-------~-~f~~ 335 (501)
T KOG0029|consen 286 WKQEAIDRLGF-GLVNKVILEFPRV--FWD-------QDID---FFGIVPETSV---------LRGL-------F-TFYD 335 (501)
T ss_pred HHHHHHHhcCC-CceeEEEEEeccc--cCC-------CCcC---eEEEcccccc---------ccch-------h-hhhh
Confidence 99999999987 7888999888864 331 0011 1111111100 0000 0 1111
Q ss_pred CCCCCCCCCCceEEEEEeccccCCCCCCCCCChHHHHHHHHHHHHHHHHhCC--CCC---CceeEEEecCcchHHHHhCC
Q 048009 389 VLDKTISPPGNHVINLFIQYTPYKPSDGSWMDPAYRDSFANRCFSLIDEYAP--GFS---SSIIGYDMLTPPDLEREIGL 463 (531)
Q Consensus 389 ~~d~~~ap~G~~~l~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~~~~P--~~~---~~i~~~~~~tp~~~~~~~~~ 463 (531)
..+-. +..+++..+...... .+.. ..++++++.++..|++++| ... +..+..|...+...
T Consensus 336 ~~~~~----~~~~l~~~~~~~~a~----~~~~-~~~~~~~~~~~~~l~k~f~~~~~~~p~~~~vt~w~~d~~~~------ 400 (501)
T KOG0029|consen 336 CKPVA----GHPVLMSVVVGEAAE----RVET-LSDSEIVKKAMKLLRKVFGSEEVPDPLDALVTRWGTDPLSG------ 400 (501)
T ss_pred cCccC----CCCeEEEEehhhhhH----HHhc-CCHHHHHHHHHHHHHHHhccCcCCCccceeeeeecccccCC------
Confidence 11111 112333332211111 1221 1358889999999999988 222 22222222222222
Q ss_pred CCCcccccCCCccccccCCCCCCCCCCCCCCCC-eeecCCCCCC--CCCcCCc--hHHHHHHHHHHHhh
Q 048009 464 TGGNIFHGAMGLDSLFLMRPVKGWSNYRTPLQG-LYMCGSGTHP--GGGVMGA--PGRNAAGIVLQDLK 527 (531)
Q Consensus 464 ~~G~~~~~~~~~~~~~~~rp~~~~~~~~t~~~~-ly~aG~~~~~--g~g~~~~--sg~~aa~~i~~~~~ 527 (531)
|+++..... -|...+...+.|+.| +||||..|.- -+.+.|| ||..+|..|+..+.
T Consensus 401 --gsys~~~~~-------~~~~~y~~l~~pi~~~~ffage~t~~~~~~tm~GA~~sG~~~a~~i~~~~~ 460 (501)
T KOG0029|consen 401 --GSYSYVAVG-------SDGDDYDRLAEPIKNRVFFAGEATSRKYPGTMHGAYLSGLRAASDILDSLI 460 (501)
T ss_pred --ccccccCCC-------CChhHHHHHhccccCcEEecchhhcccCCCchHHHHHhhHHHHHHHHHHHH
Confidence 222211111 111112244678888 9999999932 2466788 99999999998776
No 30
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=99.85 E-value=2.2e-20 Score=161.86 Aligned_cols=92 Identities=16% Similarity=0.203 Sum_probs=70.2
Q ss_pred cCchHHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCCC-cEEEcCeEEecCChHhHHhhcCCC--CCCChH
Q 048009 233 EGGMGSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADG-AQVHSSIVLSNATPYKTFMDLVPG--NILPDD 309 (531)
Q Consensus 233 ~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g-~~~~ad~VV~aa~~~~~~~~ll~~--~~~~~~ 309 (531)
.-||.+|++.|+. ..+|+++++|++|...+ +. +.+++++| +...+|.||+|....++ ..|+.. ..+|..
T Consensus 104 ~pgmsalak~LAt-----dL~V~~~~rVt~v~~~~-~~-W~l~~~~g~~~~~~d~vvla~PAPQ~-~~LLt~~~~~~p~~ 175 (331)
T COG3380 104 EPGMSALAKFLAT-----DLTVVLETRVTEVARTD-ND-WTLHTDDGTRHTQFDDVVLAIPAPQT-ATLLTTDADDLPAA 175 (331)
T ss_pred CcchHHHHHHHhc-----cchhhhhhhhhhheecC-Ce-eEEEecCCCcccccceEEEecCCCcc-hhhcCcccccchHH
Confidence 5567788887754 45699999999999875 44 55888665 46789999999998885 577754 457888
Q ss_pred HHHHhhccCCCCCeEEEeeecCCC
Q 048009 310 FILSIKHSDYSSGTTKINLAVDKL 333 (531)
Q Consensus 310 ~~~~i~~~~~~~~~~~~~~~~~~~ 333 (531)
++..+....| .+++.+.+++..+
T Consensus 176 l~~~~a~V~y-~Pc~s~~lg~~q~ 198 (331)
T COG3380 176 LRAALADVVY-APCWSAVLGYPQP 198 (331)
T ss_pred HHHhhcccee-hhHHHHHhcCCcc
Confidence 8888888888 5667777777654
No 31
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=99.81 E-value=2.6e-17 Score=161.95 Aligned_cols=121 Identities=13% Similarity=0.192 Sum_probs=79.0
Q ss_pred hccHHHHhhcccCChhHHHHHh-hhhhhccCCCCCCCC-hHHHHH-HHHhhccCCCCCccccccCchHHHHHHHHHHHHH
Q 048009 173 LSPASKVLNKWFETDVLKATLA-TDAVIGTMSSVHTPG-SGYVLL-HHVMGETDGNPGIWSYVEGGMGSVSMAIGSAARE 249 (531)
Q Consensus 173 ~~~~~~~l~~~~~~~~l~~~~~-~~~~~g~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~gG~~~l~~~l~~~~~~ 249 (531)
..++.++++++..++..+..+. ..+..........+. .....+ .+......+....+.||.||+++|+++|.+.++.
T Consensus 165 ~~T~~d~L~~~~ls~~~~d~i~~~ial~~~~~~~~~pa~~tl~ri~~y~~S~~~~g~~p~~yp~gG~g~L~qal~r~~a~ 244 (443)
T PTZ00363 165 TMTMAQLYKKFGLEDNTIDFVGHAVALYTNDDYLNKPAIETVMRIKLYMDSLSRYGKSPFIYPLYGLGGLPQAFSRLCAI 244 (443)
T ss_pred cCCHHHHHHHhCCCHHHHHHHHHHHHhhcccccccCCHHHHHHHHHHHHHHHhhccCCcceeeCCCHHHHHHHHHHHHHH
Confidence 4678888887777776666543 111110000111111 111111 1111001111233458999999999999999999
Q ss_pred cCcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCCh
Q 048009 250 AGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATP 293 (531)
Q Consensus 250 ~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~ 293 (531)
.|++++++++|++|..++++++++|++++|+++.|+.||++...
T Consensus 245 ~Gg~~~L~~~V~~I~~~~~g~~~~V~~~~Ge~i~a~~VV~~~s~ 288 (443)
T PTZ00363 245 YGGTYMLNTPVDEVVFDENGKVCGVKSEGGEVAKCKLVICDPSY 288 (443)
T ss_pred cCcEEEcCCeEEEEEEcCCCeEEEEEECCCcEEECCEEEECccc
Confidence 99999999999999987646888899999999999999995443
No 32
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=99.80 E-value=9.8e-19 Score=156.90 Aligned_cols=268 Identities=18% Similarity=0.164 Sum_probs=149.0
Q ss_pred cCCCCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCCCCceeeccc---ccCCeeecccchhhhc-chhhhhhc----C
Q 048009 14 KEKKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAVTEE---LIPGFKFSRCSYLQSL-LRPSLIKC----G 85 (531)
Q Consensus 14 ~~~~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~GG~~~s~~---~~~g~~~d~g~~~~~~-~~~~~~~~----g 85 (531)
+.+..+|+|||+|++||+||+.|+++ ++|+|||++.++||++.+.. .-.|+.+|+|.+++.. .+|++.+. |
T Consensus 5 ~~~r~~IAVIGsGisGLSAA~~Ls~r-hdVTLfEA~~rlGGha~Tv~~~~d~~g~~vDtGfiVyn~~tYpnl~~Lf~~iG 83 (447)
T COG2907 5 PHPRRKIAVIGSGISGLSAAWLLSRR-HDVTLFEADRRLGGHANTVAGNTDGGGVFVDTGFIVYNERTYPNLTRLFKTIG 83 (447)
T ss_pred CCCCcceEEEcccchhhhhHHhhhcc-cceEEEeccccccCccceeeccccCCceeecceeEEecCCCcchHHHHHHHcC
Confidence 35678999999999999999999997 99999999999999999874 3456788999887654 67776655 4
Q ss_pred cccccchhhhccchhhh------------HHHHHHHH-HHHHHHHHHHhhcCCCcccccCCCcchhhhhhhhhhhhhHHH
Q 048009 86 TRIGETWNEVVEAKSII------------VYAIFEDQ-LDKFSQFVDLLFDSSPPELLQGSSSYSHQFKNKIRNSAFWAH 152 (531)
Q Consensus 86 l~~~~~~~~~~~~~~~~------------~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (531)
.+.....-.+....+.. .+...... ..++...+..++....
T Consensus 84 v~t~as~Msf~v~~d~gglEy~g~tgl~~L~aqk~n~l~pRf~~mlaeiLrf~r-------------------------- 137 (447)
T COG2907 84 VDTKASFMSFSVSLDMGGLEYSGLTGLAGLLAQKRNLLRPRFPCMLAEILRFYR-------------------------- 137 (447)
T ss_pred CCCcccceeEEEEecCCceeeccCCCccchhhccccccchhHHHHHHHHHHHhh--------------------------
Confidence 32111110000000000 00000000 0011111111100000
Q ss_pred HHHHHHhcChhhHHHHHHHHhccHHHHhhcc---------cCChhHHHHHhhhhhhccCCCCCCCChHHH-HHHHHhhcc
Q 048009 153 CLRRAISLGQKDLVEFVDLLLSPASKVLNKW---------FETDVLKATLATDAVIGTMSSVHTPGSGYV-LLHHVMGET 222 (531)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---------~~~~~l~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~ 222 (531)
. .....+....-..++.++|.+. +--+.....++..... ...-|...+. +..+.-...
T Consensus 138 -------~-~~~~~d~~~~~~~tl~~~L~~~~f~~af~e~~l~P~~aaiwstp~~d----~~~~pa~~~~~f~~nhGll~ 205 (447)
T COG2907 138 -------S-DLAPSDNAGQGDTTLAQYLKQRNFGRAFVEDFLQPLVAAIWSTPLAD----ASRYPACNFLVFTDNHGLLY 205 (447)
T ss_pred -------h-hccchhhhcCCCccHHHHHHhcCccHHHHHHhHHHHHHHHhcCcHhh----hhhhhHHHHHHHHhccCcee
Confidence 0 0000000011123333444331 1112222222211100 0011111111 111111111
Q ss_pred CCCCCccccccCchHHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChHhHHhhcCC
Q 048009 223 DGNPGIWSYVEGGMGSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYKTFMDLVP 302 (531)
Q Consensus 223 ~~~~~~~~~~~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~~~~~~ll~ 302 (531)
......|..+.||+...++.|...+ +++|.+++.|.+|..-.+| +. |...||++-.+|.||+|+.|.+.+ .|++
T Consensus 206 l~~rp~wrtV~ggS~~yvq~laa~~---~~~i~t~~~V~~l~rlPdG-v~-l~~~~G~s~rFD~vViAth~dqAl-~mL~ 279 (447)
T COG2907 206 LPKRPTWRTVAGGSRAYVQRLAADI---RGRIETRTPVCRLRRLPDG-VV-LVNADGESRRFDAVVIATHPDQAL-ALLD 279 (447)
T ss_pred cCCCCceeEcccchHHHHHHHhccc---cceeecCCceeeeeeCCCc-eE-EecCCCCccccceeeeecChHHHH-HhcC
Confidence 4556778889999999988887644 4679999999999987734 33 556679888999999999999964 5665
Q ss_pred CCCCChHHHHHhhccCCCCCeEEEee
Q 048009 303 GNILPDDFILSIKHSDYSSGTTKINL 328 (531)
Q Consensus 303 ~~~~~~~~~~~i~~~~~~~~~~~~~~ 328 (531)
+ -+++..+.+..+.|+....+++-
T Consensus 280 e--~sp~e~qll~a~~Ys~n~aVlht 303 (447)
T COG2907 280 E--PSPEERQLLGALRYSANTAVLHT 303 (447)
T ss_pred C--CCHHHHHHHHhhhhhhceeEEee
Confidence 5 34555668889999655444443
No 33
>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]
Probab=99.74 E-value=5.5e-17 Score=150.07 Aligned_cols=240 Identities=19% Similarity=0.188 Sum_probs=138.9
Q ss_pred cccCchHHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeC--CCc-EEEcCeEEecCChHhHHhhcCCCCCCC
Q 048009 231 YVEGGMGSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLA--DGA-QVHSSIVLSNATPYKTFMDLVPGNILP 307 (531)
Q Consensus 231 ~~~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~--~g~-~~~ad~VV~aa~~~~~~~~ll~~~~~~ 307 (531)
-.+||.+.+.+++.+.+.+..+.|.+..++..+.....|++ .+.+. ++. ....++++.+..+.. +.++++. ..
T Consensus 243 sl~gGle~lP~a~~~~L~~~~v~i~~~~~~~~~sk~~~~~~-~~tl~~~~~~~~~~~~~~~~t~~~~k-~a~ll~~--~~ 318 (491)
T KOG1276|consen 243 SLKGGLETLPKALRKSLGEREVSISLGLKLSGNSKSRSGNW-SLTLVDHSGTQRVVVSYDAATLPAVK-LAKLLRG--LQ 318 (491)
T ss_pred hhhhhHhHhHHHHHHHhcccchhhhcccccccccccccCCc-eeEeEcCCCceeeeccccccccchHH-hhhhccc--cc
Confidence 46899999999999999999999999999999887654543 35554 443 344555555555554 6888876 44
Q ss_pred hHHHHHhhccCCCCCeEEEeeecCCCCccccccCCCCCCCCCcceEEEECCCCHHHHHHHHHHHHcCCCCCCCeEEEEeC
Q 048009 308 DDFILSIKHSDYSSGTTKINLAVDKLPQFQCCKLSHPDPGPQHVGTIHIGSESMEEIHSACQEAVNGLPSRRPIIEMTIP 387 (531)
Q Consensus 308 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (531)
+.....+..+.| .++.++.+-+++... +...+..|.++.. .. -.....+-+.+.
T Consensus 319 ~sls~~L~ei~y-~~V~vVn~~yp~~~~---------~~pl~GFG~LvPs-~~---------------~~~~~~LG~ifd 372 (491)
T KOG1276|consen 319 NSLSNALSEIPY-VPVAVVNTYYPKEKI---------DLPLQGFGLLVPS-EP---------------KNGFKTLGTIFD 372 (491)
T ss_pred hhhhhhhhcCCC-CceEEEEEeccCccc---------ccccccceeeccC-CC---------------CCCCceeEEEee
Confidence 556677778877 788888888876421 1112344444331 11 011234445555
Q ss_pred CCCCCCCCCCCceEEEEEeccccCCCCCCCCCC-hHHHHHHHHHHHHHHHHhCCCCCCceeEEEecCcchHHHHhCCCCC
Q 048009 388 SVLDKTISPPGNHVINLFIQYTPYKPSDGSWMD-PAYRDSFANRCFSLIDEYAPGFSSSIIGYDMLTPPDLEREIGLTGG 466 (531)
Q Consensus 388 s~~d~~~ap~G~~~l~~~~~~~~~~~~~~~~~~-~~~k~~~~~~~~~~l~~~~P~~~~~i~~~~~~tp~~~~~~~~~~~G 466 (531)
|...|.++|.++.+++... ..+. .|.- ....|++.+.+.+.|.++. +++.......+ ++.+ .-.|+.
T Consensus 373 S~~Fp~~~~s~~vtvm~gg--~~~~----n~~~~~~S~ee~~~~v~~alq~~L-gi~~~P~~~~v----~l~~-~ciPqy 440 (491)
T KOG1276|consen 373 SMLFPDRSPSPKVTVMMGG--GGST----NTSLAVPSPEELVNAVTSALQKML-GISNKPVSVNV----HLWK-NCIPQY 440 (491)
T ss_pred cccCCCCCCCceEEEEecc--cccc----cCcCCCCCHHHHHHHHHHHHHHHh-CCCCCcccccc----eehh-hcccce
Confidence 6666777777666555532 2111 1111 1134888999999998875 33322111111 1111 013333
Q ss_pred cccccCCCccccccCCCCCCCCCCCC--CCCCeeecCCCCCCCCCcCCc--hHHHHHHHHH
Q 048009 467 NIFHGAMGLDSLFLMRPVKGWSNYRT--PLQGLYMCGSGTHPGGGVMGA--PGRNAAGIVL 523 (531)
Q Consensus 467 ~~~~~~~~~~~~~~~rp~~~~~~~~t--~~~~ly~aG~~~~~g~g~~~~--sg~~aa~~i~ 523 (531)
.+.|... ... .+ ..-+ +-.+|+++|.|.. |.++..+ +|+.+|..++
T Consensus 441 ~vGh~~~-le~---a~------~~l~~~~g~~l~l~G~~y~-Gv~vgdcI~sg~~~A~~v~ 490 (491)
T KOG1276|consen 441 TVGHDDV-LEA---AK------SMLTDSPGLGLFLGGNHYG-GVSVGDCIESGRKTAVEVI 490 (491)
T ss_pred ecchHHH-HHH---HH------HHHHhCCCCceEeeccccC-CCChhHHHHhhHHHHHhhc
Confidence 3322111 000 00 1112 2358999999984 6777766 9999988764
No 34
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=99.67 E-value=7.1e-16 Score=152.95 Aligned_cols=58 Identities=28% Similarity=0.389 Sum_probs=51.3
Q ss_pred CCCcEEEECCChhHHHHHHHHHHc----CCcEEEEccCCCCCceeeccc-ccCCeeecccchh
Q 048009 16 KKWDALVIGGGHNGLTAAAYLARA----GLSVAVLERRHVIGGAAVTEE-LIPGFKFSRCSYL 73 (531)
Q Consensus 16 ~~~dvvIIGaGiaGL~aA~~L~~~----G~~V~v~E~~~~~GG~~~s~~-~~~g~~~d~g~~~ 73 (531)
...+|+|||||++||+||++|++. |++|+|+|+++.+||++.+.. ...||.++.|+..
T Consensus 21 ~~~~a~IIGaGiAGLAAA~~L~~dg~~~G~~VtIlEk~~~~GG~~~~~~~~~~Gy~~~~G~~~ 83 (576)
T PRK13977 21 DNKKAYIIGSGLASLAAAVFLIRDGQMPGENITILEELDVPGGSLDGAGNPEKGYVARGGREM 83 (576)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHccCCCCCcEEEEeCCCCCCCCccCcccccCCEEEECCCCc
Confidence 458999999999999999999995 689999999999999998754 3679999988764
No 35
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=99.62 E-value=8.1e-15 Score=136.14 Aligned_cols=63 Identities=16% Similarity=0.195 Sum_probs=55.0
Q ss_pred ccc-CchHHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChHh
Q 048009 231 YVE-GGMGSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYK 295 (531)
Q Consensus 231 ~~~-gG~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~~ 295 (531)
+|. ...+.|+++|.+.+++.||+|+++++|.+|..++ .. ..|.+.+|+++.||.+|+|+|..+
T Consensus 104 Fp~sdkA~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~~-~~-f~l~t~~g~~i~~d~lilAtGG~S 167 (408)
T COG2081 104 FPDSDKASPIVDALLKELEALGVTIRTRSRVSSVEKDD-SG-FRLDTSSGETVKCDSLILATGGKS 167 (408)
T ss_pred cCCccchHHHHHHHHHHHHHcCcEEEecceEEeEEecC-ce-EEEEcCCCCEEEccEEEEecCCcC
Confidence 565 6778999999999999999999999999999886 44 448899998899999999999554
No 36
>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]
Probab=99.61 E-value=1.6e-13 Score=123.43 Aligned_cols=65 Identities=23% Similarity=0.300 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHHcCcEEEcCcceeEEEecC-CCceeEEEeCCCcEEEcCeEEecCChHhHHhhcCCC
Q 048009 237 GSVSMAIGSAAREAGAHIVTRAEVSQLMIND-SGRVNGVQLADGAQVHSSIVLSNATPYKTFMDLVPG 303 (531)
Q Consensus 237 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~-~g~~~~V~~~~g~~~~ad~VV~aa~~~~~~~~ll~~ 303 (531)
.+-.++++..+++.|+.++.+.+|..+...+ ++..+.|++.+|..+.|+.+|+|+|+|. .+|++.
T Consensus 153 ~kslk~~~~~~~~~G~i~~dg~~v~~~~~~~e~~~~v~V~Tt~gs~Y~akkiI~t~GaWi--~klL~~ 218 (399)
T KOG2820|consen 153 AKSLKALQDKARELGVIFRDGEKVKFIKFVDEEGNHVSVQTTDGSIYHAKKIIFTVGAWI--NKLLPT 218 (399)
T ss_pred HHHHHHHHHHHHHcCeEEecCcceeeEeeccCCCceeEEEeccCCeeecceEEEEecHHH--HhhcCc
Confidence 4677888999999999999999999998532 2566779999999999999999999998 688874
No 37
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=99.58 E-value=2.3e-14 Score=141.00 Aligned_cols=68 Identities=32% Similarity=0.566 Sum_probs=57.9
Q ss_pred cccCc---hHHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChHhHHhhcCC
Q 048009 231 YVEGG---MGSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYKTFMDLVP 302 (531)
Q Consensus 231 ~~~gG---~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~~~~~~ll~ 302 (531)
++.+| ...+.++|.+.+++.|++|+.+++|++|..++ +++.+|++.+|+ +.||.||+|+|++. ..|++
T Consensus 138 ~~~~g~i~~~~l~~~l~~~~~~~Gv~i~~~~~V~~i~~~~-~~v~gv~~~~g~-i~ad~vV~a~G~~s--~~l~~ 208 (358)
T PF01266_consen 138 FPEGGVIDPRRLIQALAAEAQRAGVEIRTGTEVTSIDVDG-GRVTGVRTSDGE-IRADRVVLAAGAWS--PQLLP 208 (358)
T ss_dssp ETTEEEEEHHHHHHHHHHHHHHTT-EEEESEEEEEEEEET-TEEEEEEETTEE-EEECEEEE--GGGH--HHHHH
T ss_pred ccccccccccchhhhhHHHHHHhhhhccccccccchhhcc-cccccccccccc-cccceeEecccccc--eeeee
Confidence 66777 78999999999999999999999999999998 888889999998 99999999999987 44543
No 38
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=99.57 E-value=1.5e-12 Score=128.81 Aligned_cols=61 Identities=28% Similarity=0.329 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChHhHHhhcCC
Q 048009 237 GSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYKTFMDLVP 302 (531)
Q Consensus 237 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~~~~~~ll~ 302 (531)
..+...+.+.+.+.|++++.+++|++|..++ +.+ .|++++| ++.+|.||+|+|++. ..+++
T Consensus 149 ~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~-~~~-~v~~~~g-~~~a~~vV~A~G~~~--~~l~~ 209 (376)
T PRK11259 149 ELAIKAHLRLAREAGAELLFNEPVTAIEADG-DGV-TVTTADG-TYEAKKLVVSAGAWV--KDLLP 209 (376)
T ss_pred HHHHHHHHHHHHHCCCEEECCCEEEEEEeeC-CeE-EEEeCCC-EEEeeEEEEecCcch--hhhcc
Confidence 4677778888888999999999999999876 544 4888888 599999999999987 45554
No 39
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=99.55 E-value=2.6e-12 Score=127.38 Aligned_cols=56 Identities=16% Similarity=0.208 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChHh
Q 048009 237 GSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYK 295 (531)
Q Consensus 237 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~~ 295 (531)
..+...|.+.+++.|++++.+++|++|..++ +.+. |+++++ ++.+|.||+|+|++.
T Consensus 145 ~~~~~~l~~~~~~~g~~~~~~~~V~~i~~~~-~~~~-v~~~~~-~i~a~~vV~aaG~~~ 200 (380)
T TIGR01377 145 EKALRALQELAEAHGATVRDGTKVVEIEPTE-LLVT-VKTTKG-SYQANKLVVTAGAWT 200 (380)
T ss_pred HHHHHHHHHHHHHcCCEEECCCeEEEEEecC-CeEE-EEeCCC-EEEeCEEEEecCcch
Confidence 4788888888899999999999999999876 5554 777776 599999999999886
No 40
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=99.54 E-value=7.3e-12 Score=125.15 Aligned_cols=58 Identities=24% Similarity=0.344 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChHh
Q 048009 237 GSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYK 295 (531)
Q Consensus 237 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~~ 295 (531)
..+...|.+.++++|++++.+++|++|..++++++.+|++.+|. +.+++||++++++.
T Consensus 183 ~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~~~v~t~~g~-i~a~~vVvaagg~~ 240 (407)
T TIGR01373 183 DAVAWGYARGADRRGVDIIQNCEVTGFIRRDGGRVIGVETTRGF-IGAKKVGVAVAGHS 240 (407)
T ss_pred HHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCCcEEEEEeCCce-EECCEEEECCChhh
Confidence 36777888899999999999999999986532677778888884 99999999999887
No 41
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=99.50 E-value=5.5e-13 Score=128.51 Aligned_cols=58 Identities=19% Similarity=0.342 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCCCcE-EEcCeEEecCChHh
Q 048009 237 GSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADGAQ-VHSSIVLSNATPYK 295 (531)
Q Consensus 237 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~-~~ad~VV~aa~~~~ 295 (531)
..++.+|++.++++|++|++|++|+.|+.++ +.++.+.+.+|++ ++|+.||.++|..+
T Consensus 153 ~~~t~~l~e~a~~~g~~i~ln~eV~~i~~~~-dg~~~~~~~~g~~~~~ak~Vin~AGl~A 211 (429)
T COG0579 153 GELTRALAEEAQANGVELRLNTEVTGIEKQS-DGVFVLNTSNGEETLEAKFVINAAGLYA 211 (429)
T ss_pred HHHHHHHHHHHHHcCCEEEecCeeeEEEEeC-CceEEEEecCCcEEEEeeEEEECCchhH
Confidence 4789999999999999999999999999987 4356688888876 99999999999776
No 42
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=99.50 E-value=1.3e-11 Score=123.44 Aligned_cols=57 Identities=14% Similarity=0.145 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCCC-----cEEEcCeEEecCChHh
Q 048009 237 GSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADG-----AQVHSSIVLSNATPYK 295 (531)
Q Consensus 237 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g-----~~~~ad~VV~aa~~~~ 295 (531)
..+...|.+.+++.|++|+.+++|++|..++ +.+. +.+.++ .++.||+||+|+|++.
T Consensus 197 ~~~~~~l~~~a~~~G~~i~~~~~V~~i~~~~-~~~~-v~~~~~~~~~~~~i~a~~vV~a~G~~s 258 (410)
T PRK12409 197 HKFTTGLAAACARLGVQFRYGQEVTSIKTDG-GGVV-LTVQPSAEHPSRTLEFDGVVVCAGVGS 258 (410)
T ss_pred HHHHHHHHHHHHhCCCEEEcCCEEEEEEEeC-CEEE-EEEEcCCCCccceEecCEEEECCCcCh
Confidence 4678888999999999999999999998766 5544 444332 3689999999999997
No 43
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=99.49 E-value=9.8e-12 Score=124.79 Aligned_cols=58 Identities=19% Similarity=0.359 Sum_probs=50.2
Q ss_pred hHHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChHh
Q 048009 236 MGSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYK 295 (531)
Q Consensus 236 ~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~~ 295 (531)
...++..|.+.++++|++|+++++|++|..++ +++.+|++.++ ++.||+||+|+|++.
T Consensus 200 p~~~~~~l~~~~~~~G~~i~~~~~V~~i~~~~-~~~~~v~t~~~-~~~a~~VV~a~G~~~ 257 (416)
T PRK00711 200 CQLFTQRLAAMAEQLGVKFRFNTPVDGLLVEG-GRITGVQTGGG-VITADAYVVALGSYS 257 (416)
T ss_pred HHHHHHHHHHHHHHCCCEEEcCCEEEEEEecC-CEEEEEEeCCc-EEeCCEEEECCCcch
Confidence 35788889999999999999999999999877 77767877766 599999999999987
No 44
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=99.49 E-value=2.9e-13 Score=132.11 Aligned_cols=60 Identities=18% Similarity=0.202 Sum_probs=44.7
Q ss_pred chHHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChHh
Q 048009 235 GMGSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYK 295 (531)
Q Consensus 235 G~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~~ 295 (531)
-..++.+.|.+.++++|++|+++++|++|..++ +++..|++++++++.||.||+|+|..+
T Consensus 107 ~a~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~~~-~~~f~v~~~~~~~~~a~~vILAtGG~S 166 (409)
T PF03486_consen 107 KASSVVDALLEELKRLGVEIHFNTRVKSIEKKE-DGVFGVKTKNGGEYEADAVILATGGKS 166 (409)
T ss_dssp -HHHHHHHHHHHHHHHT-EEE-S--EEEEEEET-TEEEEEEETTTEEEEESEEEE----SS
T ss_pred cHHHHHHHHHHHHHHcCCEEEeCCEeeeeeecC-CceeEeeccCcccccCCEEEEecCCCC
Confidence 346799999999999999999999999999987 776779997777899999999988543
No 45
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=99.46 E-value=8.6e-14 Score=98.85 Aligned_cols=54 Identities=41% Similarity=0.665 Sum_probs=47.9
Q ss_pred EECCChhHHHHHHHHHHcCCcEEEEccCCCCCceeecccccCCeeecccchhhhc
Q 048009 22 VIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAVTEELIPGFKFSRCSYLQSL 76 (531)
Q Consensus 22 IIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~GG~~~s~~~~~g~~~d~g~~~~~~ 76 (531)
|||||++||+||+.|+++|++|+|+|+++++||++.+.. .+|+.+|.|++.+..
T Consensus 1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~~GG~~~~~~-~~g~~~d~g~~~~~~ 54 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDRLGGRARSFR-IPGYRFDLGAHYFFP 54 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEEEESSSSSSGGGCEEE-ETTEEEETSS-SEEE
T ss_pred CEeeCHHHHHHHHHHHHCCCcEEEEecCcccCcceeEEE-ECCEEEeeccEEEeC
Confidence 899999999999999999999999999999999999876 588999999877543
No 46
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=99.43 E-value=3.8e-12 Score=128.67 Aligned_cols=60 Identities=20% Similarity=0.236 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChHhHHhhcCC
Q 048009 237 GSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYKTFMDLVP 302 (531)
Q Consensus 237 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~~~~~~ll~ 302 (531)
..++..|.+.+++.|++|+.+++|++|+. + +. +.|++.+|+ +.||+||+|++.+. ..+++
T Consensus 183 ~~l~~~L~~~a~~~Gv~i~~~t~V~~i~~-~-~~-~~v~t~~g~-v~A~~VV~Atga~s--~~l~~ 242 (460)
T TIGR03329 183 GLLVRGLRRVALELGVEIHENTPMTGLEE-G-QP-AVVRTPDGQ-VTADKVVLALNAWM--ASHFP 242 (460)
T ss_pred HHHHHHHHHHHHHcCCEEECCCeEEEEee-C-Cc-eEEEeCCcE-EECCEEEEcccccc--cccCh
Confidence 57889999999999999999999999975 3 33 457887775 99999999999986 44543
No 47
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=99.42 E-value=5e-12 Score=126.71 Aligned_cols=57 Identities=19% Similarity=0.284 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHH----cC--cEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChHh
Q 048009 237 GSVSMAIGSAARE----AG--AHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYK 295 (531)
Q Consensus 237 ~~l~~~l~~~~~~----~G--~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~~ 295 (531)
..++..|.+.+++ +| ++|+++++|++|..++ +..+.|++.+|+ +.||.||+|||+|.
T Consensus 211 ~~L~~al~~~a~~~~~~~G~~v~i~~~t~V~~I~~~~-~~~~~V~T~~G~-i~A~~VVvaAG~~S 273 (497)
T PTZ00383 211 QKLSESFVKHARRDALVPGKKISINLNTEVLNIERSN-DSLYKIHTNRGE-IRARFVVVSACGYS 273 (497)
T ss_pred HHHHHHHHHHHHhhhhhcCCCEEEEeCCEEEEEEecC-CCeEEEEECCCE-EEeCEEEECcChhH
Confidence 5789999999988 78 7899999999999886 556668888884 99999999999998
No 48
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=99.41 E-value=5.2e-12 Score=125.35 Aligned_cols=56 Identities=21% Similarity=0.236 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChHh
Q 048009 237 GSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYK 295 (531)
Q Consensus 237 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~~ 295 (531)
..+.++|.+.++++|++++++++|++|..++ +.+ .|++.+| ++.||.||+|+|.+.
T Consensus 149 ~~l~~aL~~~~~~~Gv~i~~~~~V~~i~~~~-~~~-~V~~~~g-~i~ad~vV~A~G~~s 204 (393)
T PRK11728 149 RAVAEAMAELIQARGGEIRLGAEVTALDEHA-NGV-VVRTTQG-EYEARTLINCAGLMS 204 (393)
T ss_pred HHHHHHHHHHHHhCCCEEEcCCEEEEEEecC-CeE-EEEECCC-EEEeCEEEECCCcch
Confidence 6899999999999999999999999998776 554 5778777 599999999999886
No 49
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=99.41 E-value=6.5e-12 Score=129.01 Aligned_cols=62 Identities=27% Similarity=0.394 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeC---CC--cEEEcCeEEecCChHhHHhhcC
Q 048009 237 GSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLA---DG--AQVHSSIVLSNATPYKTFMDLV 301 (531)
Q Consensus 237 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~---~g--~~~~ad~VV~aa~~~~~~~~ll 301 (531)
..++.++.+.+.++|++|+++++|++|..++ +++++|++. +| .++.|+.||+|+|+|. .++.
T Consensus 149 ~rl~~al~~~A~~~Ga~i~~~t~V~~i~~~~-~~v~gv~v~d~~~g~~~~i~A~~VVnAaG~wa--~~l~ 215 (546)
T PRK11101 149 FRLTAANMLDAKEHGAQILTYHEVTGLIREG-DTVCGVRVRDHLTGETQEIHAPVVVNAAGIWG--QHIA 215 (546)
T ss_pred HHHHHHHHHHHHhCCCEEEeccEEEEEEEcC-CeEEEEEEEEcCCCcEEEEECCEEEECCChhH--HHHH
Confidence 4788888888999999999999999999887 888888763 23 3689999999999997 4443
No 50
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=99.39 E-value=1.3e-10 Score=115.64 Aligned_cols=56 Identities=27% Similarity=0.354 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHcC-cEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChHh
Q 048009 237 GSVSMAIGSAAREAG-AHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYK 295 (531)
Q Consensus 237 ~~l~~~l~~~~~~~G-~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~~ 295 (531)
..++..|.+.++++| ..+..++.|..+..+ . +.+.|.+.+|+ +.||+||+|+|++.
T Consensus 156 ~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~-~-~~~~v~t~~g~-i~a~~vv~a~G~~~ 212 (387)
T COG0665 156 RLLTRALAAAAEELGVVIIEGGTPVTSLERD-G-RVVGVETDGGT-IEADKVVLAAGAWA 212 (387)
T ss_pred HHHHHHHHHHHHhcCCeEEEccceEEEEEec-C-cEEEEEeCCcc-EEeCEEEEcCchHH
Confidence 578999999999999 566668999999875 1 45678999898 99999999999997
No 51
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=99.39 E-value=1e-11 Score=131.11 Aligned_cols=61 Identities=16% Similarity=0.152 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChHhHHhhcCC
Q 048009 237 GSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYKTFMDLVP 302 (531)
Q Consensus 237 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~~~~~~ll~ 302 (531)
..++.+|.+.+++ |++|+.+++|++|..++ +++. |++.+|..+.||.||+|+|.+. ..+.+
T Consensus 408 ~~l~~aL~~~a~~-Gv~i~~~~~V~~i~~~~-~~~~-v~t~~g~~~~ad~VV~A~G~~s--~~l~~ 468 (662)
T PRK01747 408 AELCRALLALAGQ-QLTIHFGHEVARLERED-DGWQ-LDFAGGTLASAPVVVLANGHDA--ARFAQ 468 (662)
T ss_pred HHHHHHHHHhccc-CcEEEeCCEeeEEEEeC-CEEE-EEECCCcEEECCEEEECCCCCc--ccccc
Confidence 5789999999988 99999999999999876 6655 8888887778999999999987 45543
No 52
>PRK06116 glutathione reductase; Validated
Probab=99.36 E-value=4.7e-13 Score=135.18 Aligned_cols=59 Identities=14% Similarity=0.154 Sum_probs=48.7
Q ss_pred hHHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChHh
Q 048009 236 MGSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYK 295 (531)
Q Consensus 236 ~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~~ 295 (531)
...+.+.+.+.++++|++++++++|++|..++++.+ .|++.+|+++.+|.||+++|...
T Consensus 207 ~~~~~~~l~~~L~~~GV~i~~~~~V~~i~~~~~g~~-~v~~~~g~~i~~D~Vv~a~G~~p 265 (450)
T PRK06116 207 DPDIRETLVEEMEKKGIRLHTNAVPKAVEKNADGSL-TLTLEDGETLTVDCLIWAIGREP 265 (450)
T ss_pred CHHHHHHHHHHHHHCCcEEECCCEEEEEEEcCCceE-EEEEcCCcEEEeCEEEEeeCCCc
Confidence 457888889999999999999999999987652434 47788888899999999988654
No 53
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=99.34 E-value=1.4e-12 Score=128.16 Aligned_cols=252 Identities=17% Similarity=0.225 Sum_probs=139.9
Q ss_pred CCCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCCCCceeecccccCCeeecccchhhhcchhhhhhcCcccccchhhh
Q 048009 16 KKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAVTEELIPGFKFSRCSYLQSLLRPSLIKCGTRIGETWNEV 95 (531)
Q Consensus 16 ~~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~GG~~~s~~~~~g~~~d~g~~~~~~~~~~~~~~gl~~~~~~~~~ 95 (531)
.+||++|||+|.+|.+||.++++.|.+|.|+|+...+||.|-...|.|...+-..+.........-...|+....
T Consensus 3 ~~yDvvVIG~GpaG~~aA~raa~~G~kvalvE~~~~lGGtCln~GCIPsK~Ll~~a~~~~~~~~~~~~~Gi~~~~----- 77 (454)
T COG1249 3 KEYDVVVIGAGPAGYVAAIRAAQLGLKVALVEKGERLGGTCLNVGCIPSKALLHAAEVIEEARHAAKEYGISAEV----- 77 (454)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCCCEEEEeecCCcCceEEeeCccccHHHHHHHHHHHHHhhcccccceecCC-----
Confidence 479999999999999999999999999999999989999999998888644333332211111000011221110
Q ss_pred ccchhhhHHHH-HHHHHHHHHHHHHHhhcCCCcccccCCCcchhhhhhhhhh---hhhHHHHHHHHHhcChhhHHHHHHH
Q 048009 96 VEAKSIIVYAI-FEDQLDKFSQFVDLLFDSSPPELLQGSSSYSHQFKNKIRN---SAFWAHCLRRAISLGQKDLVEFVDL 171 (531)
Q Consensus 96 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (531)
..-+...... ..............++.....+...+.+.|.+...-.... ..+..+.+..+.++.+.... ....
T Consensus 78 -~~id~~~~~~~k~~v~~~~~~~~~~l~~~~~V~vi~G~a~f~~~~~v~V~~~~~~~~~a~~iiIATGS~p~~~~-~~~~ 155 (454)
T COG1249 78 -PKIDFEKLLARKDKVVRLLTGGVEGLLKKNGVDVIRGEARFVDPHTVEVTGEDKETITADNIIIATGSRPRIPP-GPGI 155 (454)
T ss_pred -CCcCHHHHHHHHHHHHHHHhhhHHHHHhhCCCEEEEEEEEECCCCEEEEcCCCceEEEeCEEEEcCCCCCcCCC-CCCC
Confidence 0112222222 2223344455566677777788888888887743322222 12222222223222211110 0000
Q ss_pred HhccHHHHhhcccCCh------hHHHHHh--hhhhhccCCCCCCCChHHHHHHHHhhcc----CCCCCccccccCchHHH
Q 048009 172 LLSPASKVLNKWFETD------VLKATLA--TDAVIGTMSSVHTPGSGYVLLHHVMGET----DGNPGIWSYVEGGMGSV 239 (531)
Q Consensus 172 ~~~~~~~~l~~~~~~~------~l~~~~~--~~~~~g~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~gG~~~l 239 (531)
.. ..++.+. .+...+. +.+++|. .+..+...++.- +..+ ....+-...+
T Consensus 156 ~~-------~~~~~s~~~l~~~~lP~~lvIiGgG~IGl---------E~a~~~~~LG~~VTiie~~~---~iLp~~D~ei 216 (454)
T COG1249 156 DG-------ARILDSSDALFLLELPKSLVIVGGGYIGL---------EFASVFAALGSKVTVVERGD---RILPGEDPEI 216 (454)
T ss_pred CC-------CeEEechhhcccccCCCEEEEECCCHHHH---------HHHHHHHHcCCcEEEEecCC---CCCCcCCHHH
Confidence 00 0011111 1112111 2233331 111111111110 1111 1234446789
Q ss_pred HHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCCCc--EEEcCeEEecCChHh
Q 048009 240 SMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADGA--QVHSSIVLSNATPYK 295 (531)
Q Consensus 240 ~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~--~~~ad~VV~aa~~~~ 295 (531)
++.+.+.+++.|++++++++|++++..+ +. ..|++++|+ ++++|.|++|+|-..
T Consensus 217 ~~~~~~~l~~~gv~i~~~~~v~~~~~~~-~~-v~v~~~~g~~~~~~ad~vLvAiGR~P 272 (454)
T COG1249 217 SKELTKQLEKGGVKILLNTKVTAVEKKD-DG-VLVTLEDGEGGTIEADAVLVAIGRKP 272 (454)
T ss_pred HHHHHHHHHhCCeEEEccceEEEEEecC-Ce-EEEEEecCCCCEEEeeEEEEccCCcc
Confidence 9999999999889999999999999876 44 458888876 688999999998554
No 54
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=99.34 E-value=1.6e-11 Score=120.80 Aligned_cols=57 Identities=21% Similarity=0.236 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHc-CcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChHhHHhhcCC
Q 048009 237 GSVSMAIGSAAREA-GAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYKTFMDLVP 302 (531)
Q Consensus 237 ~~l~~~l~~~~~~~-G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~~~~~~ll~ 302 (531)
..+...|.+.+.++ |++|+.+++|++|.. + .|++.+|+ +.||+||+|+|++. ..|++
T Consensus 145 ~~~~~~l~~~~~~~~Gv~i~~~t~V~~i~~---~---~v~t~~g~-i~a~~VV~A~G~~s--~~l~~ 202 (365)
T TIGR03364 145 REAIPALAAYLAEQHGVEFHWNTAVTSVET---G---TVRTSRGD-VHADQVFVCPGADF--ETLFP 202 (365)
T ss_pred HHHHHHHHHHHHhcCCCEEEeCCeEEEEec---C---eEEeCCCc-EEeCEEEECCCCCh--hhhCc
Confidence 46788888887775 999999999999963 3 37787786 78999999999987 45654
No 55
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=99.34 E-value=8.5e-13 Score=132.65 Aligned_cols=48 Identities=33% Similarity=0.595 Sum_probs=43.8
Q ss_pred CCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCCCCceeecccccCCe
Q 048009 17 KWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAVTEELIPGF 65 (531)
Q Consensus 17 ~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~GG~~~s~~~~~g~ 65 (531)
+|||+|||||++|++||..|+++|++|+|+|+. .+||.|....|.+..
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~-~~GG~c~~~gciPsk 49 (450)
T TIGR01421 2 HYDYLVIGGGSGGIASARRAAEHGAKALLVEAK-KLGGTCVNVGCVPKK 49 (450)
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCcEEEeccc-ccccceeccCcCccH
Confidence 699999999999999999999999999999995 699999887777763
No 56
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=99.33 E-value=1.3e-12 Score=132.68 Aligned_cols=58 Identities=22% Similarity=0.265 Sum_probs=48.4
Q ss_pred hHHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChHh
Q 048009 236 MGSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYK 295 (531)
Q Consensus 236 ~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~~ 295 (531)
...+.+.+.+.++++|++++++++|++|..++ +.+. +++.+|+++++|.||+++|...
T Consensus 215 d~~~~~~l~~~l~~~gI~v~~~~~v~~i~~~~-~~~~-v~~~~g~~i~~D~vi~a~G~~p 272 (461)
T PRK05249 215 DDEISDALSYHLRDSGVTIRHNEEVEKVEGGD-DGVI-VHLKSGKKIKADCLLYANGRTG 272 (461)
T ss_pred CHHHHHHHHHHHHHcCCEEEECCEEEEEEEeC-CeEE-EEECCCCEEEeCEEEEeecCCc
Confidence 45788899999999999999999999998765 4443 6677888899999999988655
No 57
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=99.31 E-value=1.9e-11 Score=112.39 Aligned_cols=61 Identities=20% Similarity=0.281 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCC-----------CcEEEcCeEEecCChHhHH
Q 048009 237 GSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLAD-----------GAQVHSSIVLSNATPYKTF 297 (531)
Q Consensus 237 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~-----------g~~~~ad~VV~aa~~~~~~ 297 (531)
..+...|.+.+++.|++|+++++|+++..++++++.+|.+.+ ..++.|+.||.|+|.+..+
T Consensus 104 ~~l~~~L~~~A~~~Gv~I~~~t~V~dl~~~~~g~V~Gvv~~~~~v~~~g~~~~~~~i~Ak~VI~ATG~~a~v 175 (257)
T PRK04176 104 VEAAAKLAAAAIDAGAKIFNGVSVEDVILREDPRVAGVVINWTPVEMAGLHVDPLTIEAKAVVDATGHDAEV 175 (257)
T ss_pred HHHHHHHHHHHHHcCCEEEcCceeceeeEeCCCcEEEEEEccccccccCCCCCcEEEEcCEEEEEeCCCcHH
Confidence 467888888899999999999999999886634788877642 2368999999999977743
No 58
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=99.31 E-value=5.7e-11 Score=117.08 Aligned_cols=61 Identities=28% Similarity=0.415 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCCCc-----EEEcCeEEecCChHhHHhhcCC
Q 048009 238 SVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADGA-----QVHSSIVLSNATPYKTFMDLVP 302 (531)
Q Consensus 238 ~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~-----~~~ad~VV~aa~~~~~~~~ll~ 302 (531)
.|+...+..+.++|++|+..++|+++..++ | +++|++.|.+ ++.|+.||.|||||. .+++.
T Consensus 165 RLv~~~a~~A~~~Ga~il~~~~v~~~~re~-~-v~gV~~~D~~tg~~~~ira~~VVNAaGpW~--d~i~~ 230 (532)
T COG0578 165 RLVAANARDAAEHGAEILTYTRVESLRREG-G-VWGVEVEDRETGETYEIRARAVVNAAGPWV--DEILE 230 (532)
T ss_pred HHHHHHHHHHHhcccchhhcceeeeeeecC-C-EEEEEEEecCCCcEEEEEcCEEEECCCccH--HHHHH
Confidence 678888888999999999999999999988 7 8999987633 588999999999998 56554
No 59
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=99.29 E-value=2.9e-11 Score=110.75 Aligned_cols=62 Identities=23% Similarity=0.273 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHcCcEEEcCcceeEEEecCCC--ceeEEEeCC-----------CcEEEcCeEEecCChHhHHhhc
Q 048009 238 SVSMAIGSAAREAGAHIVTRAEVSQLMINDSG--RVNGVQLAD-----------GAQVHSSIVLSNATPYKTFMDL 300 (531)
Q Consensus 238 ~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g--~~~~V~~~~-----------g~~~~ad~VV~aa~~~~~~~~l 300 (531)
.+...|.+.+.+.|++|+.++.|++|..++ + ++.+|.++. ..+++|+.||.|+|....+.++
T Consensus 101 el~~~L~~~a~e~GV~I~~~t~V~dli~~~-~~~~V~GVv~~~~~v~~~g~~~d~~~i~Ak~VVdATG~~a~v~~~ 175 (254)
T TIGR00292 101 EFISTLASKALQAGAKIFNGTSVEDLITRD-DTVGVAGVVINWSAIELAGLHVDPLTQRSRVVVDATGHDAEIVAV 175 (254)
T ss_pred HHHHHHHHHHHHcCCEEECCcEEEEEEEeC-CCCceEEEEeCCccccccCCCCCCEEEEcCEEEEeecCCchHHHH
Confidence 677778888889999999999999999876 5 688887752 2368999999999866544443
No 60
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=99.28 E-value=4.9e-11 Score=101.18 Aligned_cols=41 Identities=49% Similarity=0.823 Sum_probs=39.0
Q ss_pred CCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCCCCceee
Q 048009 17 KWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAV 57 (531)
Q Consensus 17 ~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~GG~~~ 57 (531)
..||+|||||++||+||++|+++|.+|+||||+-.+||-+.
T Consensus 30 esDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~ls~GGG~w 70 (262)
T COG1635 30 ESDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLSFGGGIW 70 (262)
T ss_pred hccEEEECcCcchHHHHHHHHhCCceEEEEEeecccCCccc
Confidence 57999999999999999999999999999999999999865
No 61
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=99.27 E-value=2.8e-12 Score=129.10 Aligned_cols=48 Identities=35% Similarity=0.578 Sum_probs=43.9
Q ss_pred CCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCCCCceeecccccCCe
Q 048009 17 KWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAVTEELIPGF 65 (531)
Q Consensus 17 ~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~GG~~~s~~~~~g~ 65 (531)
+|||+|||||++|++||..++++|++|+|+|+ +.+||.|....|.|..
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~lie~-~~~GG~c~~~gciPsk 49 (446)
T TIGR01424 2 DYDLFVIGAGSGGVRAARLAANHGAKVAIAEE-PRVGGTCVIRGCVPKK 49 (446)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCcEEEEec-CccCceeecCCcCchH
Confidence 59999999999999999999999999999999 5899999887777653
No 62
>PLN02546 glutathione reductase
Probab=99.27 E-value=4.8e-12 Score=129.01 Aligned_cols=53 Identities=28% Similarity=0.443 Sum_probs=45.8
Q ss_pred CCCCcEEEECCChhHHHHHHHHHHcCCcEEEEcc---------CCCCCceeecccccCCeee
Q 048009 15 EKKWDALVIGGGHNGLTAAAYLARAGLSVAVLER---------RHVIGGAAVTEELIPGFKF 67 (531)
Q Consensus 15 ~~~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~---------~~~~GG~~~s~~~~~g~~~ 67 (531)
..+|||+|||||.+|+.||..++++|++|+|+|+ ...+||.|-...|+|...+
T Consensus 77 ~~~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~~~~~~~~~~~~~GGtC~n~GCiPsK~l 138 (558)
T PLN02546 77 HYDFDLFTIGAGSGGVRASRFASNFGASAAVCELPFATISSDTLGGVGGTCVLRGCVPKKLL 138 (558)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccccccccccCCCccCcccCcchHHHHHH
Confidence 3469999999999999999999999999999996 2568999998888775433
No 63
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=99.27 E-value=4.6e-11 Score=124.12 Aligned_cols=59 Identities=29% Similarity=0.532 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHHcCcEEEcCcceeEEEecC-CCceeEEEe---CCCc--EEEcCeEEecCChHh
Q 048009 237 GSVSMAIGSAAREAGAHIVTRAEVSQLMIND-SGRVNGVQL---ADGA--QVHSSIVLSNATPYK 295 (531)
Q Consensus 237 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~-~g~~~~V~~---~~g~--~~~ad~VV~aa~~~~ 295 (531)
..+..+|++.++++|++|+.+++|++|..++ ++++++|++ .+|+ ++.+|.||+|+|+|.
T Consensus 232 ~rl~~al~~~A~~~Ga~i~~~~~V~~l~~~~~~g~v~gV~v~d~~tg~~~~i~a~~VVnAaGaws 296 (627)
T PLN02464 232 SRLNVALACTAALAGAAVLNYAEVVSLIKDESTGRIVGARVRDNLTGKEFDVYAKVVVNAAGPFC 296 (627)
T ss_pred HHHHHHHHHHHHhCCcEEEeccEEEEEEEecCCCcEEEEEEEECCCCcEEEEEeCEEEECCCHhH
Confidence 5789999999999999999999999998763 277777776 2344 579999999999996
No 64
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=99.26 E-value=5.6e-11 Score=118.72 Aligned_cols=61 Identities=28% Similarity=0.405 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChHhHHhhc
Q 048009 238 SVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYKTFMDL 300 (531)
Q Consensus 238 ~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~~~~~~l 300 (531)
.+-+.|.+.+++.|++|+.+++|++|..++ +++.+|+ .+|.++.||.||.|.|....+.+.
T Consensus 109 ~fD~~L~~~a~~~Gv~i~~~~~V~~i~~~~-g~v~~v~-~~g~~i~A~~VI~A~G~~s~l~~~ 169 (428)
T PRK10157 109 KFDAWLMEQAEEAGAQLITGIRVDNLVQRD-GKVVGVE-ADGDVIEAKTVILADGVNSILAEK 169 (428)
T ss_pred HHHHHHHHHHHHCCCEEECCCEEEEEEEeC-CEEEEEE-cCCcEEECCEEEEEeCCCHHHHHH
Confidence 566778888889999999999999998876 7766555 456679999999999987755443
No 65
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=99.26 E-value=2.8e-10 Score=114.48 Aligned_cols=57 Identities=19% Similarity=0.362 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHc-CcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChHh
Q 048009 238 SVSMAIGSAAREA-GAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYK 295 (531)
Q Consensus 238 ~l~~~l~~~~~~~-G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~~ 295 (531)
.+...+.+.+++. |++++ ...|+++..++++++.+|.+.+|..+.|+.||+|+|.+.
T Consensus 97 ~y~~~L~e~Le~~pgV~Il-e~~Vv~li~e~~g~V~GV~t~~G~~I~Ad~VILATGtfL 154 (617)
T TIGR00136 97 LYRKAMRNALENQPNLSLF-QGEVEDLILEDNDEIKGVVTQDGLKFRAKAVIITTGTFL 154 (617)
T ss_pred HHHHHHHHHHHcCCCcEEE-EeEEEEEEEecCCcEEEEEECCCCEEECCEEEEccCccc
Confidence 5667777778877 56776 457888877632788999999998999999999999985
No 66
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=99.26 E-value=4.3e-12 Score=128.76 Aligned_cols=49 Identities=37% Similarity=0.648 Sum_probs=44.3
Q ss_pred CCCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCCCCceeecccccCCe
Q 048009 16 KKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAVTEELIPGF 65 (531)
Q Consensus 16 ~~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~GG~~~s~~~~~g~ 65 (531)
.+|||+|||||++|++||..|+++|++|+|+|+.. +||.|....+.+..
T Consensus 3 ~~yDvvVIGaGpaG~~aA~~aa~~G~~V~liE~~~-~GG~c~~~gciP~k 51 (462)
T PRK06416 3 FEYDVIVIGAGPGGYVAAIRAAQLGLKVAIVEKEK-LGGTCLNRGCIPSK 51 (462)
T ss_pred ccccEEEECCCHHHHHHHHHHHHCCCcEEEEeccc-cccceeecccCCcH
Confidence 46999999999999999999999999999999977 99999877776654
No 67
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=99.26 E-value=3.6e-12 Score=129.43 Aligned_cols=48 Identities=40% Similarity=0.661 Sum_probs=43.5
Q ss_pred CCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCCCCceeecccccCCe
Q 048009 17 KWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAVTEELIPGF 65 (531)
Q Consensus 17 ~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~GG~~~s~~~~~g~ 65 (531)
.|||+|||||++|++||.+|+++|++|+|+|+ +.+||.|....+.+..
T Consensus 1 ~yDvvVIG~G~aGl~aA~~la~~G~~v~lie~-~~~GG~~~~~gc~Psk 48 (461)
T TIGR01350 1 AYDVVVIGGGPGGYVAAIRAAQLGLKVALVEK-EYLGGTCLNVGCIPTK 48 (461)
T ss_pred CccEEEECCCHHHHHHHHHHHhCCCeEEEEec-CCCCCceeecCccchH
Confidence 38999999999999999999999999999999 8899999877666653
No 68
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=99.25 E-value=6.1e-11 Score=120.50 Aligned_cols=63 Identities=25% Similarity=0.376 Sum_probs=51.9
Q ss_pred ccCchHHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeC--CC--cEEEcCeEEecCChHh
Q 048009 232 VEGGMGSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLA--DG--AQVHSSIVLSNATPYK 295 (531)
Q Consensus 232 ~~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~--~g--~~~~ad~VV~aa~~~~ 295 (531)
+.++...+...|.+.+++.|++|+++++|++|..++ +++++|++. +| ..+.++.||+|+|.+.
T Consensus 126 ~~g~g~~l~~~l~~~~~~~gv~i~~~t~v~~l~~~~-g~v~gv~~~~~~g~~~~i~a~~VIlAtGg~~ 192 (466)
T PRK08274 126 FWGGGKALVNALYRSAERLGVEIRYDAPVTALELDD-GRFVGARAGSAAGGAERIRAKAVVLAAGGFE 192 (466)
T ss_pred ecCCHHHHHHHHHHHHHHCCCEEEcCCEEEEEEecC-CeEEEEEEEccCCceEEEECCEEEECCCCCC
Confidence 344456789999999999999999999999999876 888888773 33 3578999999998764
No 69
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=99.25 E-value=1.4e-10 Score=118.13 Aligned_cols=57 Identities=28% Similarity=0.379 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCC---Cc--EEEcCeEEecCChHh
Q 048009 237 GSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLAD---GA--QVHSSIVLSNATPYK 295 (531)
Q Consensus 237 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~---g~--~~~ad~VV~aa~~~~ 295 (531)
..++..+.+.++++|++++.+++|++|..++ +. ++|++.+ |+ ++.|+.||+|+|+|.
T Consensus 155 ~rl~~~l~~~A~~~Ga~i~~~~~V~~i~~~~-~~-~~v~~~~~~~g~~~~i~a~~VVnAaG~wa 216 (508)
T PRK12266 155 ARLVVLNARDAAERGAEILTRTRVVSARREN-GL-WHVTLEDTATGKRYTVRARALVNAAGPWV 216 (508)
T ss_pred HHHHHHHHHHHHHcCCEEEcCcEEEEEEEeC-CE-EEEEEEEcCCCCEEEEEcCEEEECCCccH
Confidence 4677888888999999999999999998765 54 4566653 53 689999999999987
No 70
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=99.24 E-value=1.4e-10 Score=118.37 Aligned_cols=58 Identities=19% Similarity=0.338 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeC--CCc--EEEcCeEEecCChHh
Q 048009 237 GSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLA--DGA--QVHSSIVLSNATPYK 295 (531)
Q Consensus 237 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~--~g~--~~~ad~VV~aa~~~~ 295 (531)
..+.+.|.+.+++.|++|+++++|++|..++ |++++|++. +++ ++.++.||+|+|.+.
T Consensus 190 ~~l~~~L~~~~~~~gv~i~~~t~v~~l~~~~-g~V~Gv~~~~~~g~~~~i~a~~VVlAtGG~~ 251 (506)
T PRK06481 190 GYLVDGLLKNVQERKIPLFVNADVTKITEKD-GKVTGVKVKINGKETKTISSKAVVVTTGGFG 251 (506)
T ss_pred HHHHHHHHHHHHHcCCeEEeCCeeEEEEecC-CEEEEEEEEeCCCeEEEEecCeEEEeCCCcc
Confidence 3678889999999999999999999998776 888887764 333 588999999998665
No 71
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=99.24 E-value=1.1e-11 Score=124.88 Aligned_cols=49 Identities=41% Similarity=0.561 Sum_probs=42.9
Q ss_pred CCCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCC-CCceeecccccCC
Q 048009 16 KKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHV-IGGAAVTEELIPG 64 (531)
Q Consensus 16 ~~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~-~GG~~~s~~~~~g 64 (531)
++|||+|||||++|++||..|+++|++|+|+|+++. +||.|....+.+.
T Consensus 2 ~~~dvvVIG~GpaG~~aA~~l~~~g~~V~liE~~~~~~GG~c~~~gciP~ 51 (438)
T PRK07251 2 LTYDLIVIGFGKAGKTLAAKLASAGKKVALVEESKAMYGGTCINIGCIPT 51 (438)
T ss_pred CccCEEEECCCHHHHHHHHHHHhCCCEEEEEecCCcccceeeecCccccc
Confidence 469999999999999999999999999999999874 6999876555543
No 72
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=99.24 E-value=8.4e-11 Score=118.41 Aligned_cols=58 Identities=19% Similarity=0.231 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEe---CCCc--EEEcCeEEecCChHh
Q 048009 237 GSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQL---ADGA--QVHSSIVLSNATPYK 295 (531)
Q Consensus 237 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~---~~g~--~~~ad~VV~aa~~~~ 295 (531)
..++.+|.+.++++|++|+++++|++|..++++.+. |++ .+|+ ++.||+||+|||.+.
T Consensus 178 ~~l~~aL~~~a~~~Gv~i~~~t~V~~i~~~~~~~v~-v~~~~~~~g~~~~i~A~~VV~AAG~~s 240 (483)
T TIGR01320 178 GALTKQLLGYLVQNGTTIRFGHEVRNLKRQSDGSWT-VTVKNTRTGGKRTLNTRFVFVGAGGGA 240 (483)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCeEE-EEEeeccCCceEEEECCEEEECCCcch
Confidence 589999999999999999999999999986524433 443 2342 589999999999987
No 73
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=99.24 E-value=4.8e-11 Score=115.03 Aligned_cols=65 Identities=23% Similarity=0.300 Sum_probs=52.7
Q ss_pred CCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCCCCceeecccccCCee-ecccchhhhcchhhhh
Q 048009 17 KWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAVTEELIPGFK-FSRCSYLQSLLRPSLI 82 (531)
Q Consensus 17 ~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~GG~~~s~~~~~g~~-~d~g~~~~~~~~~~~~ 82 (531)
++||+|||||++||++|+.|++.|.+|+|+|+++.+||.|.+.. ..|.. .+.|++++....+.++
T Consensus 1 ~~DvvIIGaG~aGlsaA~~La~~G~~V~viEk~~~iGG~~~~~~-~~g~~~~~~G~h~f~t~~~~v~ 66 (377)
T TIGR00031 1 MFDYIIVGAGLSGIVLANILAQLNKRVLVVEKRNHIGGNCYDEV-DETILFHQYGPHIFHTNNQYVW 66 (377)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCCceeeec-CCCceEEeecceeEecCcHHHH
Confidence 37999999999999999999999999999999999999998765 34443 4778777654444433
No 74
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=99.23 E-value=1e-11 Score=125.85 Aligned_cols=47 Identities=36% Similarity=0.617 Sum_probs=42.7
Q ss_pred CCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCCCCceeecccccCC
Q 048009 17 KWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAVTEELIPG 64 (531)
Q Consensus 17 ~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~GG~~~s~~~~~g 64 (531)
+|||+|||||++|++||.+|+++|++|+|+|+ ..+||.|....+.+.
T Consensus 4 ~~DvvIIG~GpaG~~AA~~aa~~G~~V~lie~-~~~GG~c~~~gciPs 50 (466)
T PRK07818 4 HYDVVVLGAGPGGYVAAIRAAQLGLKTAVVEK-KYWGGVCLNVGCIPS 50 (466)
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCeEEEEec-CCCCCceecCCcccc
Confidence 59999999999999999999999999999998 478999988776664
No 75
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=99.23 E-value=5.1e-12 Score=127.75 Aligned_cols=50 Identities=34% Similarity=0.622 Sum_probs=45.8
Q ss_pred CCCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCCCCceeecccccCCe
Q 048009 16 KKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAVTEELIPGF 65 (531)
Q Consensus 16 ~~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~GG~~~s~~~~~g~ 65 (531)
.+|||+|||||++|++||.+++++|++|+|+|+++.+||.|....|.|..
T Consensus 2 ~~~DvvVIG~GpaG~~AA~~aa~~G~~V~liE~~~~~GG~c~~~gciPsK 51 (466)
T PRK06115 2 ASYDVVIIGGGPGGYNAAIRAGQLGLKVACVEGRSTLGGTCLNVGCMPSK 51 (466)
T ss_pred CcccEEEECCCHHHHHHHHHHHhCCCeEEEEecCCceeeeeccCcccccH
Confidence 46999999999999999999999999999999988899999887777764
No 76
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=99.23 E-value=1.4e-11 Score=124.16 Aligned_cols=259 Identities=15% Similarity=0.175 Sum_probs=129.4
Q ss_pred CCCcEEEECCChhHHHHHHHHHHc-CCcEEEEccC--------CCCCceeecccccCCeeecccchhhhcchhhhhhcCc
Q 048009 16 KKWDALVIGGGHNGLTAAAYLARA-GLSVAVLERR--------HVIGGAAVTEELIPGFKFSRCSYLQSLLRPSLIKCGT 86 (531)
Q Consensus 16 ~~~dvvIIGaGiaGL~aA~~L~~~-G~~V~v~E~~--------~~~GG~~~s~~~~~g~~~d~g~~~~~~~~~~~~~~gl 86 (531)
.+|||+|||||.+|.+||..++++ |.+|+|+|+. ..+||.|-...|.|...+-..+........ ....|+
T Consensus 2 ~~~DviVIG~G~~G~~aA~~aa~~~g~~V~lie~~~~~~~~~~~~~GGtCln~GCiPsK~l~~~a~~~~~~~~-~~~~gi 80 (486)
T TIGR01423 2 KAFDLVVIGAGSGGLEAGWNAATLYKKRVAVIDVQTHHGPPHYAALGGTCVNVGCVPKKLMVTGAQYMDTLRE-SAGFGW 80 (486)
T ss_pred CccCEEEECCChHHHHHHHHHHHhcCCEEEEEecccCccccccCCccCeecCcCCccHHHHHHHHHHHHHHHH-hhccCe
Confidence 579999999999999999999997 9999999984 579999999888876443333222111110 011132
Q ss_pred ccccchhhhccchhhhHH-HHHHHHHHHHHHHHHHhhcC-CCcccccCCCcchhhhhhhhh---------hhhhHHHHHH
Q 048009 87 RIGETWNEVVEAKSIIVY-AIFEDQLDKFSQFVDLLFDS-SPPELLQGSSSYSHQFKNKIR---------NSAFWAHCLR 155 (531)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~ 155 (531)
.... .. ...+.... .........+......++.. ...+.+.+...|.+.....+. ...+..+.+.
T Consensus 81 ~~~~--~~--~~~d~~~~~~~~~~~v~~~~~~~~~~l~~~~gv~~i~G~a~f~~~~~v~V~~~~~~~~~~~~~~~~d~lI 156 (486)
T TIGR01423 81 EFDR--SS--VKANWKALIAAKNKAVLDINKSYEGMFADTEGLTFFLGWGALEDKNVVLVRESADPKSAVKERLQAEHIL 156 (486)
T ss_pred eccC--Cc--cccCHHHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEEEEEEccCCEEEEeeccCCCCCcceEEECCEEE
Confidence 1000 00 00112111 22223334444444455544 366667666666664332221 0112222222
Q ss_pred HHHhcChh--hHHHHHHHHhccHHHHhhcccCChhHHHHH-hhhhhhccCCCCCCCChHHHHHHHHh---h--ccCCCCC
Q 048009 156 RAISLGQK--DLVEFVDLLLSPASKVLNKWFETDVLKATL-ATDAVIGTMSSVHTPGSGYVLLHHVM---G--ETDGNPG 227 (531)
Q Consensus 156 ~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~---~--~~~~~~~ 227 (531)
.+.+..+. .+..... . .+..+.+. ... .-+.++ .+.+++| ..+..+...+ + .+....+
T Consensus 157 IATGs~p~~p~i~G~~~-~-~~~~~~~~--~~~-~~~~vvIIGgG~iG---------~E~A~~~~~l~~~G~~Vtli~~~ 222 (486)
T TIGR01423 157 LATGSWPQMLGIPGIEH-C-ISSNEAFY--LDE-PPRRVLTVGGGFIS---------VEFAGIFNAYKPRGGKVTLCYRN 222 (486)
T ss_pred EecCCCCCCCCCCChhh-e-echhhhhc--ccc-CCCeEEEECCCHHH---------HHHHHHHHHhccCCCeEEEEecC
Confidence 22222111 0000000 0 01111110 000 000110 0111111 0111100000 0 0000000
Q ss_pred ccccccCchHHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChHh
Q 048009 228 IWSYVEGGMGSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYK 295 (531)
Q Consensus 228 ~~~~~~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~~ 295 (531)
.. ....-...+.+.+.+.++++|+++++++.|++|..++ +....|++.+|+++.+|.||+++|...
T Consensus 223 ~~-il~~~d~~~~~~l~~~L~~~GI~i~~~~~v~~i~~~~-~~~~~v~~~~g~~i~~D~vl~a~G~~P 288 (486)
T TIGR01423 223 NM-ILRGFDSTLRKELTKQLRANGINIMTNENPAKVTLNA-DGSKHVTFESGKTLDVDVVMMAIGRVP 288 (486)
T ss_pred Cc-cccccCHHHHHHHHHHHHHcCCEEEcCCEEEEEEEcC-CceEEEEEcCCCEEEcCEEEEeeCCCc
Confidence 00 1112236788999999999999999999999998765 333447777888899999999988554
No 77
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.23 E-value=9.2e-11 Score=119.72 Aligned_cols=57 Identities=23% Similarity=0.273 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCCC----cEEEcCeEEecCChHh
Q 048009 237 GSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADG----AQVHSSIVLSNATPYK 295 (531)
Q Consensus 237 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g----~~~~ad~VV~aa~~~~ 295 (531)
..+...+...++++|++++.+++|++|..++ +. +.|++.++ .++.|+.||.|+|+|.
T Consensus 155 ~rl~~~l~~~a~~~Ga~i~~~~~V~~i~~~~-~~-~~v~~~~~~g~~~~i~a~~VVnAaG~wa 215 (502)
T PRK13369 155 ARLVVLNALDAAERGATILTRTRCVSARREG-GL-WRVETRDADGETRTVRARALVNAAGPWV 215 (502)
T ss_pred HHHHHHHHHHHHHCCCEEecCcEEEEEEEcC-CE-EEEEEEeCCCCEEEEEecEEEECCCccH
Confidence 4677888888999999999999999999875 43 45776654 2589999999999997
No 78
>PRK06370 mercuric reductase; Validated
Probab=99.21 E-value=1.6e-11 Score=124.51 Aligned_cols=49 Identities=39% Similarity=0.698 Sum_probs=43.4
Q ss_pred CCCCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCCCCceeecccccCC
Q 048009 15 EKKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAVTEELIPG 64 (531)
Q Consensus 15 ~~~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~GG~~~s~~~~~g 64 (531)
+.+|||+|||||++|++||.+|+++|++|+|+|+. .+||.|....|.+.
T Consensus 3 ~~~~DvvVIG~GpaG~~aA~~aa~~G~~v~lie~~-~~GG~c~~~gciPs 51 (463)
T PRK06370 3 AQRYDAIVIGAGQAGPPLAARAAGLGMKVALIERG-LLGGTCVNTGCVPT 51 (463)
T ss_pred CccccEEEECCCHHHHHHHHHHHhCCCeEEEEecC-ccCCceeccccCcH
Confidence 35699999999999999999999999999999995 68999877666654
No 79
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=99.20 E-value=7.3e-11 Score=116.93 Aligned_cols=65 Identities=17% Similarity=0.153 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChHhHHhhcCCC
Q 048009 238 SVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYKTFMDLVPG 303 (531)
Q Consensus 238 ~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~~~~~~ll~~ 303 (531)
.+.+.|++.+++.|++++.+++|+.+..++ +.+..++..++.+++|+.||.|.|+...+.+.+..
T Consensus 96 ~fd~~La~~A~~aGae~~~~~~~~~~~~~~-~~~~~~~~~~~~e~~a~~vI~AdG~~s~l~~~lg~ 160 (396)
T COG0644 96 KFDKWLAERAEEAGAELYPGTRVTGVIRED-DGVVVGVRAGDDEVRAKVVIDADGVNSALARKLGL 160 (396)
T ss_pred HhhHHHHHHHHHcCCEEEeceEEEEEEEeC-CcEEEEEEcCCEEEEcCEEEECCCcchHHHHHhCC
Confidence 667789999999999999999999999988 55444444454679999999999988877665543
No 80
>PLN02507 glutathione reductase
Probab=99.20 E-value=1.7e-11 Score=124.39 Aligned_cols=58 Identities=16% Similarity=0.247 Sum_probs=47.9
Q ss_pred hHHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChHh
Q 048009 236 MGSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYK 295 (531)
Q Consensus 236 ~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~~ 295 (531)
...+.+.+.+.++++|++|+++++|++|..++ +.+ .|.+.+|+++.+|.||+++|...
T Consensus 243 d~~~~~~l~~~l~~~GI~i~~~~~V~~i~~~~-~~~-~v~~~~g~~i~~D~vl~a~G~~p 300 (499)
T PLN02507 243 DDEMRAVVARNLEGRGINLHPRTNLTQLTKTE-GGI-KVITDHGEEFVADVVLFATGRAP 300 (499)
T ss_pred CHHHHHHHHHHHHhCCCEEEeCCEEEEEEEeC-CeE-EEEECCCcEEEcCEEEEeecCCC
Confidence 45788888889999999999999999998755 443 36777888899999999888554
No 81
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=99.19 E-value=1e-09 Score=112.79 Aligned_cols=64 Identities=25% Similarity=0.380 Sum_probs=51.5
Q ss_pred cccCchHHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeC-CCc--EEEc-CeEEecCChHhH
Q 048009 231 YVEGGMGSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLA-DGA--QVHS-SIVLSNATPYKT 296 (531)
Q Consensus 231 ~~~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~-~g~--~~~a-d~VV~aa~~~~~ 296 (531)
+..+| ..|...|.+.+++.|++|+++++|+++..++ |+|+||... +|+ .+.+ +.||+|+|-+..
T Consensus 212 ~~~~G-~~l~~~L~~~~~~~Gv~i~~~t~v~~Li~~~-g~V~GV~~~~~g~~~~i~a~kaVILAtGGf~~ 279 (564)
T PRK12845 212 YAAGG-QALAAGLFAGVLRAGIPIWTETSLVRLTDDG-GRVTGAVVDHRGREVTVTARRGVVLAAGGFDH 279 (564)
T ss_pred ccCCh-HHHHHHHHHHHHHCCCEEEecCEeeEEEecC-CEEEEEEEEECCcEEEEEcCCEEEEecCCccc
Confidence 34555 7899999999999999999999999998766 899998664 443 3556 469999998774
No 82
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=99.18 E-value=2e-10 Score=115.20 Aligned_cols=60 Identities=32% Similarity=0.494 Sum_probs=49.4
Q ss_pred chHHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeC---CCc--EEEcCeEEecCChHh
Q 048009 235 GMGSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLA---DGA--QVHSSIVLSNATPYK 295 (531)
Q Consensus 235 G~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~---~g~--~~~ad~VV~aa~~~~ 295 (531)
+...+...|.+.++++|++|+++++|+++..++ ++|++|... +|+ .+.|+.||+|+|...
T Consensus 139 ~g~~~~~~l~~~~~~~gv~i~~~~~~~~Li~e~-g~V~Gv~~~~~~~g~~~~i~A~aVIlAtGG~~ 203 (417)
T PF00890_consen 139 GGKALIEALAKAAEEAGVDIRFNTRVTDLITED-GRVTGVVAENPADGEFVRIKAKAVILATGGFG 203 (417)
T ss_dssp HHHHHHHHHHHHHHHTTEEEEESEEEEEEEEET-TEEEEEEEEETTTCEEEEEEESEEEE----BG
T ss_pred cHHHHHHHHHHHHhhcCeeeeccceeeeEEEeC-CceeEEEEEECCCCeEEEEeeeEEEeccCccc
Confidence 456899999999999999999999999999987 899999887 454 578999999999877
No 83
>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]
Probab=99.18 E-value=1e-08 Score=100.83 Aligned_cols=57 Identities=21% Similarity=0.411 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChHh
Q 048009 237 GSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYK 295 (531)
Q Consensus 237 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~~ 295 (531)
..++.+|+..+.+.|+.|..++.|++|.... ++..+|.+.-|. +++.+||.|||.|.
T Consensus 187 ~~lC~ala~~A~~~GA~viE~cpV~~i~~~~-~~~~gVeT~~G~-iet~~~VNaaGvWA 243 (856)
T KOG2844|consen 187 AGLCQALARAASALGALVIENCPVTGLHVET-DKFGGVETPHGS-IETECVVNAAGVWA 243 (856)
T ss_pred HHHHHHHHHHHHhcCcEEEecCCcceEEeec-CCccceeccCcc-eecceEEechhHHH
Confidence 5789999999999999999999999999988 666799999997 99999999999998
No 84
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=99.18 E-value=2.5e-10 Score=115.19 Aligned_cols=60 Identities=17% Similarity=0.260 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeC--CCc--EEEcCeEEecCChHhH
Q 048009 237 GSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLA--DGA--QVHSSIVLSNATPYKT 296 (531)
Q Consensus 237 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~--~g~--~~~ad~VV~aa~~~~~ 296 (531)
..+.+.|.+.+++.|++|+++++|++|..++++++++|++. +++ .+.++.||+|+|.+..
T Consensus 130 ~~l~~~l~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~g~~~~~~a~~VVlAtGg~~~ 193 (439)
T TIGR01813 130 AEIVQKLYKKAKKEGIDTRLNSKVEDLIQDDQGTVVGVVVKGKGKGIYIKAAKAVVLATGGFGS 193 (439)
T ss_pred HHHHHHHHHHHHHcCCEEEeCCEeeEeEECCCCcEEEEEEEeCCCeEEEEecceEEEecCCCCC
Confidence 46889999999999999999999999998654788887764 343 4689999999998763
No 85
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=99.18 E-value=1.3e-10 Score=99.51 Aligned_cols=42 Identities=50% Similarity=0.785 Sum_probs=35.5
Q ss_pred CCCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCCCCceee
Q 048009 16 KKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAV 57 (531)
Q Consensus 16 ~~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~GG~~~ 57 (531)
.++||+|||||++||+||++|+++|++|+|+|++..+||.+.
T Consensus 16 ~~~DV~IVGaGpaGl~aA~~La~~g~kV~v~E~~~~~GGg~~ 57 (230)
T PF01946_consen 16 LEYDVAIVGAGPAGLTAAYYLAKAGLKVAVIERKLSPGGGMW 57 (230)
T ss_dssp TEESEEEE--SHHHHHHHHHHHHHTS-EEEEESSSS-BTTTT
T ss_pred ccCCEEEECCChhHHHHHHHHHHCCCeEEEEecCCCCCcccc
Confidence 469999999999999999999999999999999999998864
No 86
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=99.18 E-value=3e-11 Score=121.79 Aligned_cols=48 Identities=40% Similarity=0.654 Sum_probs=42.7
Q ss_pred CCCcEEEECCChhHHHHHHHHHHcCCcEEEEccCC-CCCceeecccccC
Q 048009 16 KKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRH-VIGGAAVTEELIP 63 (531)
Q Consensus 16 ~~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~-~~GG~~~s~~~~~ 63 (531)
++|||+|||||++|++||.+|+++|++|+|+|+.+ .+||.|....+.+
T Consensus 2 ~~yDvvVIGgGpaGl~aA~~la~~g~~V~lie~~~~~~GG~~~~~gcip 50 (441)
T PRK08010 2 NKYQAVIIGFGKAGKTLAVTLAKAGWRVALIEQSNAMYGGTCINIGCIP 50 (441)
T ss_pred CcCCEEEECCCHhHHHHHHHHHHCCCeEEEEcCCCCccceeEeeccccc
Confidence 46999999999999999999999999999999976 4899997765544
No 87
>PTZ00058 glutathione reductase; Provisional
Probab=99.17 E-value=3.5e-11 Score=122.70 Aligned_cols=52 Identities=35% Similarity=0.563 Sum_probs=46.2
Q ss_pred CCCCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCCCCceeecccccCCeee
Q 048009 15 EKKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAVTEELIPGFKF 67 (531)
Q Consensus 15 ~~~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~GG~~~s~~~~~g~~~ 67 (531)
..+|||+|||||.+|++||..+++.|.+|+|+|++ .+||.|-..+|.|...+
T Consensus 46 ~~~yDvvVIG~G~aG~~aA~~aa~~G~~ValIEk~-~~GGtCln~GCiPsK~l 97 (561)
T PTZ00058 46 RMVYDLIVIGGGSGGMAAARRAARNKAKVALVEKD-YLGGTCVNVGCVPKKIM 97 (561)
T ss_pred CccccEEEECcCHHHHHHHHHHHHcCCeEEEEecc-cccccccccCCCCCchh
Confidence 34699999999999999999999999999999995 79999998888876433
No 88
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=99.17 E-value=4.4e-09 Score=104.08 Aligned_cols=65 Identities=18% Similarity=0.197 Sum_probs=56.8
Q ss_pred hHHHHHHHHHHHHHcC-cEEEcCcceeEEEecCCCceeEEEeC-CCcEEEcCeEEecCChHhHHhhcCC
Q 048009 236 MGSVSMAIGSAAREAG-AHIVTRAEVSQLMINDSGRVNGVQLA-DGAQVHSSIVLSNATPYKTFMDLVP 302 (531)
Q Consensus 236 ~~~l~~~l~~~~~~~G-~~i~~~~~V~~I~~~~~g~~~~V~~~-~g~~~~ad~VV~aa~~~~~~~~ll~ 302 (531)
...|.+.|.+.+.+.+ ++++++++|+.+..++ +.+. |+++ ||+++.||.||-|=|.++.+.+.+.
T Consensus 103 ~~~l~~~L~~~~~~~~~v~~~~~~~v~~~~~~~-~~v~-v~l~~dG~~~~a~llVgADG~~S~vR~~~~ 169 (387)
T COG0654 103 RSDLLNALLEAARALPNVTLRFGAEVEAVEQDG-DGVT-VTLSFDGETLDADLLVGADGANSAVRRAAG 169 (387)
T ss_pred hHHHHHHHHHHHhhCCCcEEEcCceEEEEEEcC-CceE-EEEcCCCcEEecCEEEECCCCchHHHHhcC
Confidence 3588999999998887 8999999999999987 6776 8888 9999999999998888888777765
No 89
>PRK10015 oxidoreductase; Provisional
Probab=99.17 E-value=2.5e-10 Score=113.97 Aligned_cols=60 Identities=18% Similarity=0.253 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChHhHHhh
Q 048009 238 SVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYKTFMD 299 (531)
Q Consensus 238 ~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~~~~~~ 299 (531)
.+-..|.+.+++.|++++.+++|++|..++ +++.+|+.. +.++.||.||.|.|....+.+
T Consensus 109 ~fd~~L~~~a~~~Gv~i~~~~~V~~i~~~~-~~v~~v~~~-~~~i~A~~VI~AdG~~s~v~~ 168 (429)
T PRK10015 109 RLDPWLMEQAEQAGAQFIPGVRVDALVREG-NKVTGVQAG-DDILEANVVILADGVNSMLGR 168 (429)
T ss_pred HHHHHHHHHHHHcCCEEECCcEEEEEEEeC-CEEEEEEeC-CeEEECCEEEEccCcchhhhc
Confidence 566678888889999999999999998876 777666654 456999999999998775544
No 90
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=99.17 E-value=1.4e-11 Score=125.19 Aligned_cols=49 Identities=35% Similarity=0.646 Sum_probs=44.4
Q ss_pred CCCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCCCCceeecccccCCe
Q 048009 16 KKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAVTEELIPGF 65 (531)
Q Consensus 16 ~~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~GG~~~s~~~~~g~ 65 (531)
..|||+|||||.+|++||.+|+++|++|+|+|+. .+||.|....|.+..
T Consensus 3 ~~ydvvVIG~GpaG~~aA~~aa~~G~~v~lie~~-~~GG~c~~~gciPsk 51 (472)
T PRK05976 3 KEYDLVIIGGGPGGYVAAIRAGQLGLKTALVEKG-KLGGTCLHKGCIPSK 51 (472)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCCeEEEEEcc-CCCcceEcCCcCchH
Confidence 4699999999999999999999999999999995 799999887777653
No 91
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=99.16 E-value=8.9e-10 Score=110.17 Aligned_cols=58 Identities=17% Similarity=0.166 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHH-cCcEEEcCcceeEEEecCCCceeEEE---eCCCc--EEEcCeEEecCChHh
Q 048009 237 GSVSMAIGSAARE-AGAHIVTRAEVSQLMINDSGRVNGVQ---LADGA--QVHSSIVLSNATPYK 295 (531)
Q Consensus 237 ~~l~~~l~~~~~~-~G~~i~~~~~V~~I~~~~~g~~~~V~---~~~g~--~~~ad~VV~aa~~~~ 295 (531)
..+.++|.+.+.+ .|++|+++++|++|..++++.+. |+ +.+|+ ++.||+||+|||.|.
T Consensus 184 ~~L~~aL~~~l~~~~Gv~i~~~~~V~~I~~~~d~~w~-v~v~~t~~g~~~~i~Ad~VV~AAGawS 247 (497)
T PRK13339 184 GALTRKLAKHLESHPNAQVKYNHEVVDLERLSDGGWE-VTVKDRNTGEKREQVADYVFIGAGGGA 247 (497)
T ss_pred HHHHHHHHHHHHhCCCcEEEeCCEEEEEEECCCCCEE-EEEEecCCCceEEEEcCEEEECCCcch
Confidence 4788888888865 48999999999999887325543 44 34453 589999999999998
No 92
>PRK07121 hypothetical protein; Validated
Probab=99.16 E-value=1.1e-09 Score=111.96 Aligned_cols=61 Identities=23% Similarity=0.374 Sum_probs=50.6
Q ss_pred chHHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCC-Cc--EEEc-CeEEecCChHh
Q 048009 235 GMGSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLAD-GA--QVHS-SIVLSNATPYK 295 (531)
Q Consensus 235 G~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~-g~--~~~a-d~VV~aa~~~~ 295 (531)
+...+...|.+.+++.|++|+++++|++|..+++|++++|+..+ ++ .+.+ +.||+|+|.+.
T Consensus 175 ~g~~~~~~L~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~~~~~i~a~k~VVlAtGg~~ 239 (492)
T PRK07121 175 GGAMLMDPLAKRAAALGVQIRYDTRATRLIVDDDGRVVGVEARRYGETVAIRARKGVVLAAGGFA 239 (492)
T ss_pred chHHHHHHHHHHHHhCCCEEEeCCEEEEEEECCCCCEEEEEEEeCCcEEEEEeCCEEEECCCCcC
Confidence 34578999999999999999999999999887537898887753 33 5778 99999999776
No 93
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=99.16 E-value=5.3e-10 Score=111.88 Aligned_cols=43 Identities=42% Similarity=0.571 Sum_probs=40.3
Q ss_pred CCCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCCCCceeec
Q 048009 16 KKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAVT 58 (531)
Q Consensus 16 ~~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~GG~~~s 58 (531)
...+|+|||||++||+||.+|++.|++|+|||+++.+||.+..
T Consensus 9 ~~~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~~~~vGG~W~~ 51 (461)
T PLN02172 9 NSQHVAVIGAGAAGLVAARELRREGHTVVVFEREKQVGGLWVY 51 (461)
T ss_pred CCCCEEEECCcHHHHHHHHHHHhcCCeEEEEecCCCCcceeec
Confidence 4689999999999999999999999999999999999998754
No 94
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=99.15 E-value=5e-10 Score=112.90 Aligned_cols=58 Identities=21% Similarity=0.277 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHcC-cEEEcCcceeEEEecCCCceeEEEe---CCCc--EEEcCeEEecCChHh
Q 048009 237 GSVSMAIGSAAREAG-AHIVTRAEVSQLMINDSGRVNGVQL---ADGA--QVHSSIVLSNATPYK 295 (531)
Q Consensus 237 ~~l~~~l~~~~~~~G-~~i~~~~~V~~I~~~~~g~~~~V~~---~~g~--~~~ad~VV~aa~~~~ 295 (531)
..+.++|.+.+++.| ++|+++++|++|..++++.+. |++ .+|+ ++.|++||+|+|.+.
T Consensus 183 ~~l~~aL~~~a~~~Ggv~i~~~teV~~I~~~~dg~~~-v~~~~~~~G~~~~i~A~~VVvaAGg~s 246 (494)
T PRK05257 183 GALTRQLVGYLQKQGNFELQLGHEVRDIKRNDDGSWT-VTVKDLKTGEKRTVRAKFVFIGAGGGA 246 (494)
T ss_pred HHHHHHHHHHHHhCCCeEEEeCCEEEEEEECCCCCEE-EEEEEcCCCceEEEEcCEEEECCCcch
Confidence 578999999999987 799999999999986534443 443 3453 589999999999987
No 95
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=99.15 E-value=1e-11 Score=113.70 Aligned_cols=260 Identities=18% Similarity=0.240 Sum_probs=141.9
Q ss_pred CCCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCCCCceeecccccCCeeecccchhhhcchhhhh-hcCcccccchhh
Q 048009 16 KKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAVTEELIPGFKFSRCSYLQSLLRPSLI-KCGTRIGETWNE 94 (531)
Q Consensus 16 ~~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~GG~~~s~~~~~g~~~d~g~~~~~~~~~~~~-~~gl~~~~~~~~ 94 (531)
.++||+|||+|++|-.||...++.|++...+|++..+||.|-..+|.|...+-.-+|.+.......+ ..|++.. .
T Consensus 38 ~d~DvvvIG~GpGGyvAAikAaQlGlkTacvEkr~~LGGTcLnvGcIPSKALL~nSh~yh~~q~~~~~~rGi~vs----~ 113 (506)
T KOG1335|consen 38 NDYDVVVIGGGPGGYVAAIKAAQLGLKTACVEKRGTLGGTCLNVGCIPSKALLNNSHLYHEAQHEDFASRGIDVS----S 113 (506)
T ss_pred ccCCEEEECCCCchHHHHHHHHHhcceeEEEeccCccCceeeeccccccHHHhhhhHHHHHHhhhHHHhcCcccc----c
Confidence 5699999999999999999999999999999999999999999888876544444444333333222 2244311 0
Q ss_pred hccchhhhHHH-HHHHHHHHHHHHHHHhhcCCCcccccCCCcchhhhhhhhhhh-----hhHHHHHHHHHhcChhhHHHH
Q 048009 95 VVEAKSIIVYA-IFEDQLDKFSQFVDLLFDSSPPELLQGSSSYSHQFKNKIRNS-----AFWAHCLRRAISLGQKDLVEF 168 (531)
Q Consensus 95 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~ 168 (531)
...+..... ........+...+..++.........+...|.+.-.-.+... ..-.+.+..+.++.....+.+
T Consensus 114 --~~~dl~~~~~~k~~~vk~Lt~gi~~lfkknkV~~~kG~gsf~~p~~V~v~k~dg~~~ii~aKnIiiATGSeV~~~PGI 191 (506)
T KOG1335|consen 114 --VSLDLQAMMKAKDNAVKQLTGGIENLFKKNKVTYVKGFGSFLDPNKVSVKKIDGEDQIIKAKNIIIATGSEVTPFPGI 191 (506)
T ss_pred --eecCHHHHHHHHHHHHHHHhhHHHHHhhhcCeEEEeeeEeecCCceEEEeccCCCceEEeeeeEEEEeCCccCCCCCe
Confidence 112222222 223345667777777887777777777777776544332111 000111111111111110000
Q ss_pred HHHHhccHHHHhhcccCChhHHHHHh--hhhhhcc-CCCC-CCCChHHHHHHHHhhccCCCCCccccccCc-hHHHHHHH
Q 048009 169 VDLLLSPASKVLNKWFETDVLKATLA--TDAVIGT-MSSV-HTPGSGYVLLHHVMGETDGNPGIWSYVEGG-MGSVSMAI 243 (531)
Q Consensus 169 ~~~~~~~~~~~l~~~~~~~~l~~~~~--~~~~~g~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG-~~~l~~~l 243 (531)
..+....-. -..-++-..+...+. +.+++|. +.+. ...++....+. +.. .+.++ ..++..++
T Consensus 192 -~IDekkIVS-StgALsL~~vPk~~~viG~G~IGLE~gsV~~rLGseVT~VE-------f~~----~i~~~mD~Eisk~~ 258 (506)
T KOG1335|consen 192 -TIDEKKIVS-STGALSLKEVPKKLTVIGAGYIGLEMGSVWSRLGSEVTVVE-------FLD----QIGGVMDGEISKAF 258 (506)
T ss_pred -EecCceEEe-cCCccchhhCcceEEEEcCceeeeehhhHHHhcCCeEEEEE-------ehh----hhccccCHHHHHHH
Confidence 000000000 000011111111121 3344442 1111 11111111111 100 11111 34799999
Q ss_pred HHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCC---C--cEEEcCeEEecCChHh
Q 048009 244 GSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLAD---G--AQVHSSIVLSNATPYK 295 (531)
Q Consensus 244 ~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~---g--~~~~ad~VV~aa~~~~ 295 (531)
.+.++++|.+++++++|..+..++||.+. |.+.| + ++++||.+++++|-..
T Consensus 259 qr~L~kQgikF~l~tkv~~a~~~~dg~v~-i~ve~ak~~k~~tle~DvlLVsiGRrP 314 (506)
T KOG1335|consen 259 QRVLQKQGIKFKLGTKVTSATRNGDGPVE-IEVENAKTGKKETLECDVLLVSIGRRP 314 (506)
T ss_pred HHHHHhcCceeEeccEEEEeeccCCCceE-EEEEecCCCceeEEEeeEEEEEccCcc
Confidence 99999999999999999999998866554 66643 3 3789999999888554
No 96
>PTZ00052 thioredoxin reductase; Provisional
Probab=99.15 E-value=5.3e-11 Score=121.05 Aligned_cols=58 Identities=16% Similarity=0.110 Sum_probs=47.9
Q ss_pred hHHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChHh
Q 048009 236 MGSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYK 295 (531)
Q Consensus 236 ~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~~ 295 (531)
...+.+.+.+.+++.|+++++++.|++|...+ +.+ .|.+.+|+++.+|.||+++|...
T Consensus 221 d~~~~~~l~~~l~~~GV~i~~~~~v~~v~~~~-~~~-~v~~~~g~~i~~D~vl~a~G~~p 278 (499)
T PTZ00052 221 DRQCSEKVVEYMKEQGTLFLEGVVPINIEKMD-DKI-KVLFSDGTTELFDTVLYATGRKP 278 (499)
T ss_pred CHHHHHHHHHHHHHcCCEEEcCCeEEEEEEcC-CeE-EEEECCCCEEEcCEEEEeeCCCC
Confidence 45678888999999999999999999998755 443 47778888899999999988655
No 97
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=99.14 E-value=1.3e-10 Score=104.34 Aligned_cols=56 Identities=18% Similarity=0.159 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChHh
Q 048009 238 SVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYK 295 (531)
Q Consensus 238 ~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~~ 295 (531)
.+.+.|.+.+++.+.+++++++|++|..++ ++ +.|++.+++++.||+||+|+|...
T Consensus 83 ~v~~yl~~~~~~~~l~i~~~~~V~~v~~~~-~~-w~v~~~~~~~~~a~~VVlAtG~~~ 138 (203)
T PF13738_consen 83 EVLDYLQEYAERFGLEIRFNTRVESVRRDG-DG-WTVTTRDGRTIRADRVVLATGHYS 138 (203)
T ss_dssp HHHHHHHHHHHHTTGGEETS--EEEEEEET-TT-EEEEETTS-EEEEEEEEE---SSC
T ss_pred HHHHHHHHHHhhcCcccccCCEEEEEEEec-cE-EEEEEEecceeeeeeEEEeeeccC
Confidence 566777788888899999999999999987 56 559999997899999999999654
No 98
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=99.13 E-value=4.4e-11 Score=121.38 Aligned_cols=59 Identities=14% Similarity=0.175 Sum_probs=46.2
Q ss_pred chHHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCC--C--cEEEcCeEEecCChHh
Q 048009 235 GMGSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLAD--G--AQVHSSIVLSNATPYK 295 (531)
Q Consensus 235 G~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~--g--~~~~ad~VV~aa~~~~ 295 (531)
....+.+.+.+.++++|++|+++++|++|..++ +.+. |.+.+ | +++.+|.||+++|...
T Consensus 222 ~d~~~~~~~~~~l~~~gi~i~~~~~v~~i~~~~-~~v~-v~~~~~~g~~~~i~~D~vl~a~G~~p 284 (475)
T PRK06327 222 ADEQVAKEAAKAFTKQGLDIHLGVKIGEIKTGG-KGVS-VAYTDADGEAQTLEVDKLIVSIGRVP 284 (475)
T ss_pred CCHHHHHHHHHHHHHcCcEEEeCcEEEEEEEcC-CEEE-EEEEeCCCceeEEEcCEEEEccCCcc
Confidence 346788888899999999999999999998765 4443 55544 3 4689999999888554
No 99
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=99.13 E-value=1.9e-09 Score=111.84 Aligned_cols=58 Identities=21% Similarity=0.402 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCC--Cc-EEEcC-eEEecCChHh
Q 048009 237 GSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLAD--GA-QVHSS-IVLSNATPYK 295 (531)
Q Consensus 237 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~--g~-~~~ad-~VV~aa~~~~ 295 (531)
..+...|.+.+++.|++|+++++|++|..++ +++++|++.+ ++ .+.++ .||+|+|.+.
T Consensus 214 ~~l~~~L~~~~~~~Gv~i~~~~~v~~l~~~~-g~V~GV~~~~~~~~~~i~a~k~VVlAtGg~~ 275 (574)
T PRK12842 214 NALAARLAKSALDLGIPILTGTPARELLTEG-GRVVGARVIDAGGERRITARRGVVLACGGFS 275 (574)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEeeC-CEEEEEEEEcCCceEEEEeCCEEEEcCCCcc
Confidence 5788999999999999999999999999887 8898888754 33 46786 6999999775
No 100
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=99.12 E-value=7e-10 Score=110.29 Aligned_cols=63 Identities=21% Similarity=0.312 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChHhHHhhcC
Q 048009 237 GSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYKTFMDLV 301 (531)
Q Consensus 237 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~~~~~~ll 301 (531)
..+.+.|.+.+++.|++++++++|++|..++ +.+. |++++|+++.+|.||.|.|.+..+.+.+
T Consensus 113 ~~l~~~L~~~~~~~gv~i~~~~~v~~i~~~~-~~v~-v~~~~g~~~~a~~vV~AdG~~S~vr~~~ 175 (392)
T PRK08773 113 DLLVDRLWAALHAAGVQLHCPARVVALEQDA-DRVR-LRLDDGRRLEAALAIAADGAASTLRELA 175 (392)
T ss_pred HHHHHHHHHHHHhCCCEEEcCCeEEEEEecC-CeEE-EEECCCCEEEeCEEEEecCCCchHHHhh
Confidence 4678888888889999999999999999876 5554 8888888899999999999887655554
No 101
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=99.12 E-value=2.9e-09 Score=110.37 Aligned_cols=58 Identities=22% Similarity=0.362 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeC--CCc-EEEc-CeEEecCChHh
Q 048009 237 GSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLA--DGA-QVHS-SIVLSNATPYK 295 (531)
Q Consensus 237 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~--~g~-~~~a-d~VV~aa~~~~ 295 (531)
..++..|.+.++++|++|+++++|++|..++ +++++|+.. ++. .+.+ +.||+|+|.+.
T Consensus 217 ~~l~~~L~~~a~~~Gv~i~~~t~v~~l~~~~-g~v~GV~~~~~~~~~~i~a~k~VVlAtGg~~ 278 (581)
T PRK06134 217 NALVARLLKSAEDLGVRIWESAPARELLRED-GRVAGAVVETPGGLQEIRARKGVVLAAGGFP 278 (581)
T ss_pred HHHHHHHHHHHHhCCCEEEcCCEEEEEEEeC-CEEEEEEEEECCcEEEEEeCCEEEEcCCCcc
Confidence 4688999999999999999999999998876 888888764 332 4788 89999999886
No 102
>PRK07190 hypothetical protein; Provisional
Probab=99.12 E-value=6.3e-10 Score=112.65 Aligned_cols=63 Identities=17% Similarity=0.257 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChHhHHhhcCC
Q 048009 238 SVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYKTFMDLVP 302 (531)
Q Consensus 238 ~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~~~~~~ll~ 302 (531)
.+-+.|.+.+++.|++|+++++|++|..++ +.+. +.+.+|+++.|++||.|.|..++..+.+.
T Consensus 110 ~le~~L~~~~~~~Gv~v~~~~~v~~l~~~~-~~v~-v~~~~g~~v~a~~vVgADG~~S~vR~~lg 172 (487)
T PRK07190 110 YVEKLLDDKLKEAGAAVKRNTSVVNIELNQ-AGCL-TTLSNGERIQSRYVIGADGSRSFVRNHFN 172 (487)
T ss_pred HHHHHHHHHHHHCCCEEEeCCEEEEEEEcC-CeeE-EEECCCcEEEeCEEEECCCCCHHHHHHcC
Confidence 455667777888999999999999999877 5544 56678888999999999999887776654
No 103
>PRK06847 hypothetical protein; Provisional
Probab=99.11 E-value=8e-10 Score=109.36 Aligned_cols=63 Identities=25% Similarity=0.367 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChHhHHhhcC
Q 048009 237 GSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYKTFMDLV 301 (531)
Q Consensus 237 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~~~~~~ll 301 (531)
..+.+.|.+.+++.|++|+++++|++|..++ +.+ .|.+.+|+++.+|.||.|.|.+....+.+
T Consensus 107 ~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~-~~~-~v~~~~g~~~~ad~vI~AdG~~s~~r~~l 169 (375)
T PRK06847 107 PALARILADAARAAGADVRLGTTVTAIEQDD-DGV-TVTFSDGTTGRYDLVVGADGLYSKVRSLV 169 (375)
T ss_pred HHHHHHHHHHHHHhCCEEEeCCEEEEEEEcC-CEE-EEEEcCCCEEEcCEEEECcCCCcchhhHh
Confidence 3678888888888899999999999998776 554 47888998999999999999887655443
No 104
>PRK14694 putative mercuric reductase; Provisional
Probab=99.09 E-value=1.2e-10 Score=118.04 Aligned_cols=51 Identities=29% Similarity=0.520 Sum_probs=44.8
Q ss_pred ccCCCCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCCCCceeecccccCC
Q 048009 13 LKEKKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAVTEELIPG 64 (531)
Q Consensus 13 ~~~~~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~GG~~~s~~~~~g 64 (531)
|...+|||+|||||++|++||..|++.|++|+|+|+. .+||.|....|.|.
T Consensus 2 ~~~~~~dviVIGaG~aG~~aA~~l~~~g~~v~lie~~-~~GGtc~n~GciPs 52 (468)
T PRK14694 2 MSDNNLHIAVIGSGGSAMAAALKATERGARVTLIERG-TIGGTCVNIGCVPS 52 (468)
T ss_pred CCCCcCCEEEECCCHHHHHHHHHHHhCCCcEEEEEcc-ccccceecCCcccc
Confidence 3456899999999999999999999999999999996 69999987666554
No 105
>PRK06834 hypothetical protein; Provisional
Probab=99.09 E-value=1.2e-09 Score=110.88 Aligned_cols=62 Identities=18% Similarity=0.238 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChHhHHhhcC
Q 048009 238 SVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYKTFMDLV 301 (531)
Q Consensus 238 ~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~~~~~~ll 301 (531)
.+-+.|.+.+++.|++|+++++|++|..++ +.+. |++.+|+++.+|+||.|.|.++...+.+
T Consensus 101 ~le~~L~~~l~~~gv~i~~~~~v~~v~~~~-~~v~-v~~~~g~~i~a~~vVgADG~~S~vR~~l 162 (488)
T PRK06834 101 HIERILAEWVGELGVPIYRGREVTGFAQDD-TGVD-VELSDGRTLRAQYLVGCDGGRSLVRKAA 162 (488)
T ss_pred HHHHHHHHHHHhCCCEEEcCCEEEEEEEcC-CeEE-EEECCCCEEEeCEEEEecCCCCCcHhhc
Confidence 567778888888899999999999999877 5544 7777888899999999999888666555
No 106
>PRK06184 hypothetical protein; Provisional
Probab=99.08 E-value=1.1e-09 Score=112.27 Aligned_cols=63 Identities=10% Similarity=0.081 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEe---CCCcEEEcCeEEecCChHhHHhhcCC
Q 048009 238 SVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQL---ADGAQVHSSIVLSNATPYKTFMDLVP 302 (531)
Q Consensus 238 ~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~---~~g~~~~ad~VV~aa~~~~~~~~ll~ 302 (531)
.+-+.|.+.+.+.|++|+++++|++|..++ +.++ +++ .+++++.||+||.|.|.++...+.+.
T Consensus 110 ~le~~L~~~l~~~gv~i~~~~~v~~i~~~~-~~v~-v~~~~~~~~~~i~a~~vVgADG~~S~vR~~lg 175 (502)
T PRK06184 110 RTERILRERLAELGHRVEFGCELVGFEQDA-DGVT-ARVAGPAGEETVRARYLVGADGGRSFVRKALG 175 (502)
T ss_pred HHHHHHHHHHHHCCCEEEeCcEEEEEEEcC-CcEE-EEEEeCCCeEEEEeCEEEECCCCchHHHHhCC
Confidence 456677788888899999999999999876 5544 445 55668999999999999987777664
No 107
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.08 E-value=1.4e-09 Score=113.45 Aligned_cols=55 Identities=22% Similarity=0.350 Sum_probs=46.1
Q ss_pred HHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeC---CCc--EEEcCeEEecCChHh
Q 048009 240 SMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLA---DGA--QVHSSIVLSNATPYK 295 (531)
Q Consensus 240 ~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~---~g~--~~~ad~VV~aa~~~~ 295 (531)
.+.|.+.+++.|++|++++.|+++..++ |+|.||... +|+ .+.|+.||+|+|...
T Consensus 173 ~~~L~~~~~~~gV~i~~~t~v~~Li~d~-g~V~GV~~~~~~~g~~~~i~AkaVVLATGG~g 232 (640)
T PRK07573 173 YQALSRQIAAGTVKMYTRTEMLDLVVVD-GRARGIVARNLVTGEIERHTADAVVLATGGYG 232 (640)
T ss_pred HHHHHHHHHhcCCEEEeceEEEEEEEeC-CEEEEEEEEECCCCcEEEEECCEEEECCCCcc
Confidence 3667777888999999999999999877 899998874 454 578999999999876
No 108
>PRK14727 putative mercuric reductase; Provisional
Probab=99.08 E-value=8.6e-11 Score=119.31 Aligned_cols=50 Identities=30% Similarity=0.502 Sum_probs=45.5
Q ss_pred CCCCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCCCCceeecccccCC
Q 048009 15 EKKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAVTEELIPG 64 (531)
Q Consensus 15 ~~~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~GG~~~s~~~~~g 64 (531)
+.++||+|||||.+|++||..|+++|.+|+|+|+.+.+||.|....|.+.
T Consensus 14 ~~~~dvvvIG~G~aG~~~a~~~~~~g~~v~~ie~~~~~GG~c~n~GciPs 63 (479)
T PRK14727 14 KLQLHVAIIGSGSAAFAAAIKAAEHGARVTIIEGADVIGGCCVNVGCVPS 63 (479)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEEccCcceeEecccccccc
Confidence 45799999999999999999999999999999999899999987666654
No 109
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=99.08 E-value=5.8e-11 Score=120.16 Aligned_cols=49 Identities=33% Similarity=0.498 Sum_probs=44.8
Q ss_pred CCCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCCCCceeecccccCC
Q 048009 16 KKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAVTEELIPG 64 (531)
Q Consensus 16 ~~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~GG~~~s~~~~~g 64 (531)
.+|||+|||||.+|++||..|+++|++|+|+|+.+.+||.|....|.|.
T Consensus 3 ~~~DvvVIG~GpaG~~aA~~aa~~G~~V~lie~~~~~GG~c~n~gciP~ 51 (471)
T PRK06467 3 IKTQVVVLGAGPAGYSAAFRAADLGLETVCVERYSTLGGVCLNVGCIPS 51 (471)
T ss_pred ccceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCcccccccCCCcccH
Confidence 4699999999999999999999999999999998899999987766665
No 110
>PRK13748 putative mercuric reductase; Provisional
Probab=99.07 E-value=1.5e-10 Score=120.45 Aligned_cols=49 Identities=31% Similarity=0.487 Sum_probs=44.2
Q ss_pred CCCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCCCCceeecccccCCe
Q 048009 16 KKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAVTEELIPGF 65 (531)
Q Consensus 16 ~~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~GG~~~s~~~~~g~ 65 (531)
.+|||+|||||++|++||..|+++|.+|+|+|++ .+||.|...+|.|..
T Consensus 97 ~~~DvvVIG~GpaG~~aA~~~~~~G~~v~lie~~-~~GG~c~n~gciPsk 145 (561)
T PRK13748 97 RPLHVAVIGSGGAAMAAALKAVEQGARVTLIERG-TIGGTCVNVGCVPSK 145 (561)
T ss_pred CCCCEEEECcCHHHHHHHHHHHhCCCeEEEEecC-cceeeccccCccccH
Confidence 4699999999999999999999999999999997 899999877666653
No 111
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=99.07 E-value=1.2e-09 Score=109.35 Aligned_cols=64 Identities=17% Similarity=0.278 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChHhHHhhcCC
Q 048009 237 GSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYKTFMDLVP 302 (531)
Q Consensus 237 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~~~~~~ll~ 302 (531)
..+.+.|.+.+.+.|++|+.+++|++|..++ +.+. |++.+|+++.+|.||.|.|.+..+.+.+.
T Consensus 111 ~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~-~~v~-v~~~~g~~~~ad~vI~AdG~~S~vr~~~g 174 (403)
T PRK07333 111 RVLINALRKRAEALGIDLREATSVTDFETRD-EGVT-VTLSDGSVLEARLLVAADGARSKLRELAG 174 (403)
T ss_pred HHHHHHHHHHHHhCCCEEEcCCEEEEEEEcC-CEEE-EEECCCCEEEeCEEEEcCCCChHHHHHcC
Confidence 4788888888888999999999999998776 5544 78888888999999999998876665543
No 112
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=99.06 E-value=7.7e-10 Score=105.64 Aligned_cols=63 Identities=22% Similarity=0.277 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeC-CCcEEEcCeEEecCChHhHHhhcC
Q 048009 237 GSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLA-DGAQVHSSIVLSNATPYKTFMDLV 301 (531)
Q Consensus 237 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~-~g~~~~ad~VV~aa~~~~~~~~ll 301 (531)
..+.+.|.+.+++.|++++++++|+++..++ +++. +.+. ++.++++|.||.|.|.+..+.+.+
T Consensus 91 ~~l~~~l~~~~~~~gv~~~~~~~v~~~~~~~-~~~~-~~~~~~~~~~~a~~vv~a~G~~s~~~~~~ 154 (295)
T TIGR02032 91 DAFDEQLAERAQEAGAELRLGTTVLDVEIHD-DRVV-VIVRGGEGTVTAKIVIGADGSRSIVAKKL 154 (295)
T ss_pred HHHHHHHHHHHHHcCCEEEeCcEEeeEEEeC-CEEE-EEEcCccEEEEeCEEEECCCcchHHHHhc
Confidence 3677788888889999999999999998876 5543 4444 345799999999999887555544
No 113
>PRK07045 putative monooxygenase; Reviewed
Probab=99.05 E-value=1.2e-09 Score=108.43 Aligned_cols=63 Identities=13% Similarity=0.226 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHH-cCcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChHhHHhhc
Q 048009 238 SVSMAIGSAARE-AGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYKTFMDL 300 (531)
Q Consensus 238 ~l~~~l~~~~~~-~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~~~~~~l 300 (531)
.|.+.|.+.+.+ .|++++++++|++|..++++.++.|++++|+++.+|.||.|-|..+...+.
T Consensus 107 ~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~~~~~~vIgADG~~S~vR~~ 170 (388)
T PRK07045 107 QLRRLLLAKLDGLPNVRLRFETSIERIERDADGTVTSVTLSDGERVAPTVLVGADGARSMIRDD 170 (388)
T ss_pred HHHHHHHHHHhcCCCeeEEeCCEEEEEEECCCCcEEEEEeCCCCEEECCEEEECCCCChHHHHH
Confidence 566777777654 579999999999999876455567888899999999999999998877774
No 114
>PRK08163 salicylate hydroxylase; Provisional
Probab=99.04 E-value=2.4e-09 Score=106.77 Aligned_cols=63 Identities=10% Similarity=0.081 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHHcC-cEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChHhHHhhcC
Q 048009 237 GSVSMAIGSAAREAG-AHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYKTFMDLV 301 (531)
Q Consensus 237 ~~l~~~l~~~~~~~G-~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~~~~~~ll 301 (531)
..+.+.|.+.+.+.| ++++++++|+++..++ +.+. |++.+|+++.||.||.|.|.+....+.+
T Consensus 109 ~~l~~~L~~~~~~~~~v~~~~~~~v~~i~~~~-~~v~-v~~~~g~~~~ad~vV~AdG~~S~~r~~~ 172 (396)
T PRK08163 109 ADIHLSLLEAVLDHPLVEFRTSTHVVGIEQDG-DGVT-VFDQQGNRWTGDALIGCDGVKSVVRQSL 172 (396)
T ss_pred HHHHHHHHHHHHhcCCcEEEeCCEEEEEecCC-CceE-EEEcCCCEEecCEEEECCCcChHHHhhc
Confidence 357778888887765 8999999999998766 5554 7788888899999999999988665443
No 115
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=99.04 E-value=4.5e-09 Score=108.73 Aligned_cols=60 Identities=17% Similarity=0.315 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeC-CCc--EEEcC-eEEecCChHhH
Q 048009 237 GSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLA-DGA--QVHSS-IVLSNATPYKT 296 (531)
Q Consensus 237 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~-~g~--~~~ad-~VV~aa~~~~~ 296 (531)
..+...|.+.+++.|++|+++++|++|..+++|+|++|... +|+ .+.|+ .||+|+|...-
T Consensus 213 ~~~~~~l~~~~~~~gv~i~~~~~~~~Li~d~~g~V~Gv~~~~~~~~~~i~a~~aVilAtGGf~~ 276 (584)
T PRK12835 213 QSLVARLRLALKDAGVPLWLDSPMTELITDPDGAVVGAVVEREGRTLRIGARRGVILATGGFDH 276 (584)
T ss_pred HHHHHHHHHHHHhCCceEEeCCEEEEEEECCCCcEEEEEEEeCCcEEEEEeceeEEEecCcccC
Confidence 46778888888999999999999999998744899998775 343 47787 49999998763
No 116
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=99.04 E-value=2.7e-09 Score=110.94 Aligned_cols=59 Identities=12% Similarity=0.220 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEe---CCCc--EEEcCeEEecCChHh
Q 048009 237 GSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQL---ADGA--QVHSSIVLSNATPYK 295 (531)
Q Consensus 237 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~---~~g~--~~~ad~VV~aa~~~~ 295 (531)
..|...|.+.+++.|++|+.++.|+++..+++|+|.||.. .+|+ .+.|+.||+|+|...
T Consensus 166 ~~i~~~L~~~a~~~gv~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~ 229 (617)
T PTZ00139 166 HAMLHTLYGQSLKYDCNFFIEYFALDLIMDEDGECRGVIAMSMEDGSIHRFRAHYTVIATGGYG 229 (617)
T ss_pred HHHHHHHHHHHHhCCCEEEeceEEEEEEECCCCEEEEEEEEECCCCeEEEEECCcEEEeCCCCc
Confidence 4788999999999999999999999998833388998875 3564 578999999998765
No 117
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=99.04 E-value=7.2e-11 Score=119.77 Aligned_cols=46 Identities=37% Similarity=0.619 Sum_probs=41.6
Q ss_pred CcEEEECCChhHHHHHHHHHHcCCcEEEEccCCCCCceeecccccCC
Q 048009 18 WDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAVTEELIPG 64 (531)
Q Consensus 18 ~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~GG~~~s~~~~~g 64 (531)
|||+|||||++|++||..|+++|++|+|+|+.. +||.|....|.+.
T Consensus 1 yDvvVIGaGpaG~~aA~~aa~~g~~v~lie~~~-~GG~c~n~gciPs 46 (463)
T TIGR02053 1 YDLVIIGSGAAAFAAAIKAAELGASVAMVERGP-LGGTCVNVGCVPS 46 (463)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCc-ccCCeeeecEEcc
Confidence 799999999999999999999999999999975 8999877666665
No 118
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=99.04 E-value=2.8e-09 Score=102.05 Aligned_cols=54 Identities=20% Similarity=0.259 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChHh
Q 048009 239 VSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYK 295 (531)
Q Consensus 239 l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~~ 295 (531)
+...+.+.+++.|+++++ ++|++|+.++ +.+ .|++.+|+++.+|+||+|+|...
T Consensus 59 ~~~~l~~~~~~~gv~~~~-~~v~~v~~~~-~~~-~v~~~~~~~~~~d~liiAtG~~~ 112 (300)
T TIGR01292 59 LMEKMKEQAVKFGAEIIY-EEVIKVDLSD-RPF-KVKTGDGKEYTAKAVIIATGASA 112 (300)
T ss_pred HHHHHHHHHHHcCCeEEE-EEEEEEEecC-Cee-EEEeCCCCEEEeCEEEECCCCCc
Confidence 344555667788999998 8999998865 443 47788888899999999999754
No 119
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=99.03 E-value=1.3e-09 Score=108.38 Aligned_cols=64 Identities=17% Similarity=0.232 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHHcC-cEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChHhHHhhcCC
Q 048009 237 GSVSMAIGSAAREAG-AHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYKTFMDLVP 302 (531)
Q Consensus 237 ~~l~~~l~~~~~~~G-~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~~~~~~ll~ 302 (531)
..+.+.|.+.+.+.| ++|+.+++|++|..++ +.+. |++++|+++.+|.||.|.|.+..+.+.+.
T Consensus 106 ~~l~~~L~~~~~~~~~~~v~~~~~v~~i~~~~-~~~~-v~~~~g~~~~~~~vi~adG~~S~vr~~l~ 170 (385)
T TIGR01988 106 RVLQQALWERLQEYPNVTLLCPARVVELPRHS-DHVE-LTLDDGQQLRARLLVGADGANSKVRQLAG 170 (385)
T ss_pred HHHHHHHHHHHHhCCCcEEecCCeEEEEEecC-CeeE-EEECCCCEEEeeEEEEeCCCCCHHHHHcC
Confidence 468888888888888 9999999999998876 6554 88889988999999999998876666553
No 120
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=99.03 E-value=4.2e-09 Score=108.67 Aligned_cols=59 Identities=20% Similarity=0.420 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeC-CCc--EEEcC-eEEecCChHhH
Q 048009 237 GSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLA-DGA--QVHSS-IVLSNATPYKT 296 (531)
Q Consensus 237 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~-~g~--~~~ad-~VV~aa~~~~~ 296 (531)
..+...|.+.+++.|++|+++++|++|..++ ++|++|+.. +|+ .+.++ .||+|+|....
T Consensus 208 ~~~~~~L~~~~~~~gv~v~~~t~v~~l~~~~-g~v~Gv~~~~~g~~~~i~A~~~VIlAtGG~~~ 270 (557)
T PRK07843 208 QALAAGLRIGLQRAGVPVLLNTPLTDLYVED-GRVTGVHAAESGEPQLIRARRGVILASGGFEH 270 (557)
T ss_pred HHHHHHHHHHHHcCCCEEEeCCEEEEEEEeC-CEEEEEEEEeCCcEEEEEeceeEEEccCCcCc
Confidence 4678888888999999999999999999876 889888775 443 47786 59998887753
No 121
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=99.03 E-value=3e-10 Score=114.93 Aligned_cols=257 Identities=16% Similarity=0.155 Sum_probs=124.6
Q ss_pred CCcEEEECCChhHHHHHHHHHHcCCcEEEEccCC--------CCCceeecccccCCeeecccchhhhcchhhhhhcCccc
Q 048009 17 KWDALVIGGGHNGLTAAAYLARAGLSVAVLERRH--------VIGGAAVTEELIPGFKFSRCSYLQSLLRPSLIKCGTRI 88 (531)
Q Consensus 17 ~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~--------~~GG~~~s~~~~~g~~~d~g~~~~~~~~~~~~~~gl~~ 88 (531)
+|||+|||||.+|+.||..+++.|.+|+|+|+.. .+||.|....|.|...+...+....... ..-..|+..
T Consensus 2 ~yDvvVIG~G~aG~~aA~~aa~~G~~v~lie~~~~~~~~~~~~~GGtc~n~GCiPsK~l~~~a~~~~~~~-~~~~~g~~~ 80 (484)
T TIGR01438 2 DYDLIVIGGGSGGLAAAKEAADYGAKVMLLDFVTPTPLGTRWGIGGTCVNVGCIPKKLMHQAALLGQALK-DSRNYGWNV 80 (484)
T ss_pred ccCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCCCcceeccccccccCcCchhHHHHHHHHHHHHh-hhhhcCccc
Confidence 5899999999999999999999999999999741 5899998888877643332222211100 000112210
Q ss_pred ccchhhhccchhhhH-HHHHHHHHHHHHHHHHHhhcCCCcccccCCCcchhhhhhhhh---h--hhhHHHHHHHHHhcCh
Q 048009 89 GETWNEVVEAKSIIV-YAIFEDQLDKFSQFVDLLFDSSPPELLQGSSSYSHQFKNKIR---N--SAFWAHCLRRAISLGQ 162 (531)
Q Consensus 89 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~--~~~~~~~~~~~~~~~~ 162 (531)
... ...+... ..+.......+......++.....+.+.+...|.+....... + ..+..+.+..+.+..+
T Consensus 81 ----~~~-~~~d~~~~~~~~~~~v~~~~~~~~~~~~~~~v~~i~G~a~f~~~~~v~v~~~~g~~~~~~~d~lVIATGs~p 155 (484)
T TIGR01438 81 ----EET-VKHDWNRLSEAVQNHIGSLNWGYRVALREKKVNYENAYAEFVDKHRIKATNKKGKEKIYSAERFLIATGERP 155 (484)
T ss_pred ----CCC-cccCHHHHHHHHHHHHHHHHHHHHHHHhhCCcEEEEEEEEEcCCCEEEEeccCCCceEEEeCEEEEecCCCC
Confidence 000 0011111 122223334444444555566666777776666664322111 0 0111222222222211
Q ss_pred h--hHHHHHHHHhccHHHHhhcccCChhHHHHHhhhhhhccCCCCCCCChHHHHHHHHhh--ccCCCCCccccccCchHH
Q 048009 163 K--DLVEFVDLLLSPASKVLNKWFETDVLKATLATDAVIGTMSSVHTPGSGYVLLHHVMG--ETDGNPGIWSYVEGGMGS 238 (531)
Q Consensus 163 ~--~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~gG~~~ 238 (531)
. .+....+. ..+..+.+. .-..+. +-.+.+.+++|. .+......++ .+...... ...+-...
T Consensus 156 ~~p~ipG~~~~-~~~~~~~~~-~~~~~~-~vvIIGgG~iG~---------E~A~~l~~~G~~Vtli~~~~--~l~~~d~~ 221 (484)
T TIGR01438 156 RYPGIPGAKEL-CITSDDLFS-LPYCPG-KTLVVGASYVAL---------ECAGFLAGIGLDVTVMVRSI--LLRGFDQD 221 (484)
T ss_pred CCCCCCCccce-eecHHHhhc-ccccCC-CEEEECCCHHHH---------HHHHHHHHhCCcEEEEEecc--cccccCHH
Confidence 1 00000000 000011100 000000 000001111110 0100000000 00000000 11223457
Q ss_pred HHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCCC---cEEEcCeEEecCChHh
Q 048009 239 VSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADG---AQVHSSIVLSNATPYK 295 (531)
Q Consensus 239 l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g---~~~~ad~VV~aa~~~~ 295 (531)
+.+.+.+.++++|++|++++.+++|...+ +.+ .|++.++ +++.+|.||+++|...
T Consensus 222 ~~~~l~~~L~~~gV~i~~~~~v~~v~~~~-~~~-~v~~~~~~~~~~i~~D~vl~a~G~~p 279 (484)
T TIGR01438 222 CANKVGEHMEEHGVKFKRQFVPIKVEQIE-AKV-KVTFTDSTNGIEEEYDTVLLAIGRDA 279 (484)
T ss_pred HHHHHHHHHHHcCCEEEeCceEEEEEEcC-CeE-EEEEecCCcceEEEeCEEEEEecCCc
Confidence 88888899999999999999999998765 443 3666555 3799999999988554
No 122
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.03 E-value=3.7e-09 Score=109.13 Aligned_cols=58 Identities=7% Similarity=-0.014 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeC---CCc--EEEcCeEEecCChHh
Q 048009 237 GSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLA---DGA--QVHSSIVLSNATPYK 295 (531)
Q Consensus 237 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~---~g~--~~~ad~VV~aa~~~~ 295 (531)
..+...|.+.+++.|++|++++.++++..++ |+|+||... +|+ .+.|+.||+|+|...
T Consensus 136 ~~i~~~L~~~~~~~gv~i~~~~~~~~Li~~~-g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~ 198 (566)
T PRK06452 136 MALLHTLFERTSGLNVDFYNEWFSLDLVTDN-KKVVGIVAMQMKTLTPFFFKTKAVVLATGGMG 198 (566)
T ss_pred HHHHHHHHHHHHhCCCEEEeCcEEEEEEEEC-CEEEEEEEEECCCCeEEEEEeCeEEECCCccc
Confidence 4688888888888899999999999999887 999998764 333 578999999999876
No 123
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.02 E-value=2.9e-09 Score=110.21 Aligned_cols=59 Identities=12% Similarity=0.084 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEe---CCCc--EEEcCeEEecCChHh
Q 048009 237 GSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQL---ADGA--QVHSSIVLSNATPYK 295 (531)
Q Consensus 237 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~---~~g~--~~~ad~VV~aa~~~~ 295 (531)
..|...|.+.+++.|++|++++.|+++..+++|+|.||.. .+|+ .+.|+.||+|+|...
T Consensus 143 ~~i~~~L~~~~~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~ 206 (588)
T PRK08958 143 HALLHTLYQQNLKNHTTIFSEWYALDLVKNQDGAVVGCTAICIETGEVVYFKARATVLATGGAG 206 (588)
T ss_pred HHHHHHHHHHhhhcCCEEEeCcEEEEEEECCCCEEEEEEEEEcCCCcEEEEEcCeEEECCCCcc
Confidence 4688899888888999999999999999863389999875 3564 578999999999876
No 124
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=99.02 E-value=4.2e-09 Score=105.25 Aligned_cols=65 Identities=17% Similarity=0.197 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChHhHHhhcCCC
Q 048009 237 GSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYKTFMDLVPG 303 (531)
Q Consensus 237 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~~~~~~ll~~ 303 (531)
..+.+.|.+.+++.|++|+.+++|++|+.++ +.+. |++.+|+++.||.||.|.|.++...+++..
T Consensus 112 ~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~-~~v~-v~~~~g~~~~a~~vVgAdG~~S~vR~~lg~ 176 (405)
T PRK05714 112 RVVQDALLERLHDSDIGLLANARLEQMRRSG-DDWL-LTLADGRQLRAPLVVAADGANSAVRRLAGC 176 (405)
T ss_pred HHHHHHHHHHHhcCCCEEEcCCEEEEEEEcC-CeEE-EEECCCCEEEeCEEEEecCCCchhHHhcCC
Confidence 3677778888888899999999999998876 5544 788899889999999999999877777643
No 125
>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function. This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....
Probab=99.02 E-value=8.2e-09 Score=100.73 Aligned_cols=64 Identities=19% Similarity=0.380 Sum_probs=52.7
Q ss_pred CCCccccccCchHHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEe
Q 048009 225 NPGIWSYVEGGMGSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLS 289 (531)
Q Consensus 225 ~~~~~~~~~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~ 289 (531)
..+.+-||..|.++|++++.+.+.-.|+...+|+.|++|..+++|++.+|.. +|+++.|++||.
T Consensus 220 G~sPfLyP~YG~GELpQ~FcRl~AV~GG~Y~L~~~i~~i~~~~~g~~~gV~s-~ge~v~~k~vI~ 283 (438)
T PF00996_consen 220 GKSPFLYPLYGLGELPQAFCRLSAVYGGTYMLNRPIDEIVVDEDGKVIGVKS-EGEVVKAKKVIG 283 (438)
T ss_dssp SSSSEEEETT-TTHHHHHHHHHHHHTT-EEESS--EEEEEEETTTEEEEEEE-TTEEEEESEEEE
T ss_pred CCCCEEEEccCCccHHHHHHHHhhhcCcEEEeCCccceeeeecCCeEEEEec-CCEEEEcCEEEE
Confidence 3446679999999999999999999999999999999999965588888876 788899999997
No 126
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=99.01 E-value=2.7e-09 Score=107.13 Aligned_cols=64 Identities=14% Similarity=0.132 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHHc-CcEEEcCcceeEEEecCCCceeEEEeCC-C--cEEEcCeEEecCChHhHHhhcCC
Q 048009 237 GSVSMAIGSAAREA-GAHIVTRAEVSQLMINDSGRVNGVQLAD-G--AQVHSSIVLSNATPYKTFMDLVP 302 (531)
Q Consensus 237 ~~l~~~l~~~~~~~-G~~i~~~~~V~~I~~~~~g~~~~V~~~~-g--~~~~ad~VV~aa~~~~~~~~ll~ 302 (531)
..+.+.|.+.+.+. |++++++++|++|+.++ +.+. |++.+ + .+++||.||.|.|.++.+.+.+.
T Consensus 121 ~~l~~~L~~~~~~~~~v~i~~~~~v~~v~~~~-~~~~-v~~~~~~~~~~i~adlvIgADG~~S~vR~~~~ 188 (415)
T PRK07364 121 QVLLEALQEFLQSCPNITWLCPAEVVSVEYQQ-DAAT-VTLEIEGKQQTLQSKLVVAADGARSPIRQAAG 188 (415)
T ss_pred HHHHHHHHHHHhcCCCcEEEcCCeeEEEEecC-CeeE-EEEccCCcceEEeeeEEEEeCCCCchhHHHhC
Confidence 35777787777765 79999999999998776 5443 66653 2 36899999999998887666553
No 127
>PLN02661 Putative thiazole synthesis
Probab=99.01 E-value=7.6e-09 Score=97.35 Aligned_cols=42 Identities=31% Similarity=0.533 Sum_probs=37.8
Q ss_pred CCCcEEEECCChhHHHHHHHHHHc-CCcEEEEccCCCCCceee
Q 048009 16 KKWDALVIGGGHNGLTAAAYLARA-GLSVAVLERRHVIGGAAV 57 (531)
Q Consensus 16 ~~~dvvIIGaGiaGL~aA~~L~~~-G~~V~v~E~~~~~GG~~~ 57 (531)
.++||+|||||++||+||+.|+++ |++|+|+|++..+||.+.
T Consensus 91 ~~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~~~GGG~~ 133 (357)
T PLN02661 91 ADTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSVSPGGGAW 133 (357)
T ss_pred ccCCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCccccccee
Confidence 368999999999999999999986 899999999999988543
No 128
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.01 E-value=4.2e-09 Score=109.41 Aligned_cols=59 Identities=17% Similarity=0.273 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEe---CCCc--EEEcCeEEecCChHh
Q 048009 237 GSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQL---ADGA--QVHSSIVLSNATPYK 295 (531)
Q Consensus 237 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~---~~g~--~~~ad~VV~aa~~~~ 295 (531)
..+...|.+.+++.|++|++++.|+++..+++|+|.||.. .+|+ .+.|+.||+|+|...
T Consensus 149 ~~i~~~L~~~~~~~gi~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~ 212 (598)
T PRK09078 149 HAILHTLYQQSLKHNAEFFIEYFALDLIMDDGGVCRGVVAWNLDDGTLHRFRAHMVVLATGGYG 212 (598)
T ss_pred HHHHHHHHHHHhhcCCEEEEeEEEEEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEECCCCCc
Confidence 4688999998999999999999999998865478999875 3564 678999999999876
No 129
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=99.01 E-value=2.3e-09 Score=108.18 Aligned_cols=56 Identities=21% Similarity=0.376 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHc-CcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChHh
Q 048009 238 SVSMAIGSAAREA-GAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYK 295 (531)
Q Consensus 238 ~l~~~l~~~~~~~-G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~~ 295 (531)
.+...+.+.+++. |++++ ++.|++|..++ +++.+|.+.+|..+.|+.||+|+|.+.
T Consensus 101 ly~kaL~e~L~~~~nV~I~-q~~V~~Li~e~-grV~GV~t~dG~~I~Ak~VIlATGTFL 157 (618)
T PRK05192 101 LYRAAMREILENQPNLDLF-QGEVEDLIVEN-GRVVGVVTQDGLEFRAKAVVLTTGTFL 157 (618)
T ss_pred HHHHHHHHHHHcCCCcEEE-EeEEEEEEecC-CEEEEEEECCCCEEECCEEEEeeCcch
Confidence 4566676777665 78874 66899998887 889999999999999999999999754
No 130
>KOG2853 consensus Possible oxidoreductase [General function prediction only]
Probab=99.01 E-value=1.3e-07 Score=85.77 Aligned_cols=37 Identities=38% Similarity=0.654 Sum_probs=33.3
Q ss_pred CCCcEEEECCChhHHHHHHHHHHc----CCcEEEEccCCCC
Q 048009 16 KKWDALVIGGGHNGLTAAAYLARA----GLSVAVLERRHVI 52 (531)
Q Consensus 16 ~~~dvvIIGaGiaGL~aA~~L~~~----G~~V~v~E~~~~~ 52 (531)
.+.||+|||||..|++.|+.|.++ |++|+|+|+++..
T Consensus 85 ~~~dVvIIGGG~~GsS~AfWLKer~rd~gl~VvVVErddty 125 (509)
T KOG2853|consen 85 YHCDVVIIGGGGSGSSTAFWLKERARDEGLNVVVVERDDTY 125 (509)
T ss_pred cccCEEEECCCccchhhHHHHHHHhhcCCceEEEEeccCcc
Confidence 468999999999999999999875 7999999998864
No 131
>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=99.01 E-value=9.4e-09 Score=92.34 Aligned_cols=40 Identities=38% Similarity=0.588 Sum_probs=36.9
Q ss_pred CcEEEECCChhHHHHHHHHHHcCCcEEEEccCCCCCceee
Q 048009 18 WDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAV 57 (531)
Q Consensus 18 ~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~GG~~~ 57 (531)
-.|||||+|++||+|+..+...|-.|+++|+...+||-+.
T Consensus 10 spvvVIGgGLAGLsasn~iin~gg~V~llek~~s~GGNSi 49 (477)
T KOG2404|consen 10 SPVVVIGGGLAGLSASNDIINKGGIVILLEKAGSIGGNSI 49 (477)
T ss_pred CcEEEECCchhhhhhHHHHHhcCCeEEEEeccCCcCCcce
Confidence 3699999999999999999999878999999999999864
No 132
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=99.00 E-value=4.3e-09 Score=109.49 Aligned_cols=59 Identities=14% Similarity=0.216 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeC---CCc--EEEcCeEEecCChHh
Q 048009 237 GSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLA---DGA--QVHSSIVLSNATPYK 295 (531)
Q Consensus 237 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~---~g~--~~~ad~VV~aa~~~~ 295 (531)
..+...|.+.+++.|++|+.++.++++..+++|++.||... +|+ .+.|+.||+|+|...
T Consensus 187 ~~i~~~L~~~a~~~gv~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~g 250 (635)
T PLN00128 187 HAMLHTLYGQAMKHNTQFFVEYFALDLIMDSDGACQGVIALNMEDGTLHRFRAHSTILATGGYG 250 (635)
T ss_pred HHHHHHHHHHHHhCCCEEEEeeEEEEEEEcCCCEEEEEEEEEcCCCeEEEEEcCeEEECCCCCc
Confidence 46888999888889999999999999887633889888763 464 678999999999876
No 133
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=99.00 E-value=7.9e-09 Score=107.13 Aligned_cols=59 Identities=20% Similarity=0.356 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCC-Cc--EEEc-CeEEecCChHhH
Q 048009 237 GSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLAD-GA--QVHS-SIVLSNATPYKT 296 (531)
Q Consensus 237 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~-g~--~~~a-d~VV~aa~~~~~ 296 (531)
..+...|.+.++++|++|+++++|+++..++ +++++|...+ |+ .+.+ +.||+|+|....
T Consensus 221 ~~l~~aL~~~~~~~Gv~i~~~t~v~~Li~~~-g~V~GV~~~~~g~~~~i~A~~~VVlAtGg~~~ 283 (578)
T PRK12843 221 NALIGRLLYSLRARGVRILTQTDVESLETDH-GRVIGATVVQGGVRRRIRARGGVVLATGGFNR 283 (578)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEeeC-CEEEEEEEecCCeEEEEEccceEEECCCCccc
Confidence 4688999999999999999999999998776 8999988754 33 4676 679999998874
No 134
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=99.00 E-value=3.6e-09 Score=104.68 Aligned_cols=57 Identities=21% Similarity=0.286 Sum_probs=47.3
Q ss_pred hHHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChHh
Q 048009 236 MGSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYK 295 (531)
Q Consensus 236 ~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~~ 295 (531)
...+.+.|.+.+++.|++|+++++|++|..++ +. ..|++ +++++.+|.||+|+|...
T Consensus 104 a~~v~~~L~~~l~~~gv~i~~~~~V~~i~~~~-~~-~~v~~-~~~~i~ad~VIlAtG~~s 160 (400)
T TIGR00275 104 AADVLDALLNELKELGVEILTNSKVKSIKKDD-NG-FGVET-SGGEYEADKVILATGGLS 160 (400)
T ss_pred HHHHHHHHHHHHHHCCCEEEeCCEEEEEEecC-Ce-EEEEE-CCcEEEcCEEEECCCCcc
Confidence 46789999999999999999999999998765 44 44766 455799999999999765
No 135
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=98.99 E-value=2.1e-09 Score=102.77 Aligned_cols=55 Identities=24% Similarity=0.474 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHH-cCcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChH
Q 048009 238 SVSMAIGSAARE-AGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPY 294 (531)
Q Consensus 238 ~l~~~l~~~~~~-~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~ 294 (531)
.+...+.+.+++ .+++|. +.+|++|..++ +++.+|.+.+|+++.+|.||+|+|++
T Consensus 96 ~y~~~~~~~l~~~~nl~i~-~~~V~~l~~e~-~~v~GV~~~~g~~~~a~~vVlaTGtf 151 (392)
T PF01134_consen 96 KYSRAMREKLESHPNLTII-QGEVTDLIVEN-GKVKGVVTKDGEEIEADAVVLATGTF 151 (392)
T ss_dssp HHHHHHHHHHHTSTTEEEE-ES-EEEEEECT-TEEEEEEETTSEEEEECEEEE-TTTG
T ss_pred HHHHHHHHHHhcCCCeEEE-EcccceEEecC-CeEEEEEeCCCCEEecCEEEEecccc
Confidence 455666677776 467775 67999999998 99999999999999999999999983
No 136
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.99 E-value=1.8e-08 Score=103.96 Aligned_cols=59 Identities=27% Similarity=0.391 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeC-CCc--EEEcC-eEEecCChHhH
Q 048009 237 GSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLA-DGA--QVHSS-IVLSNATPYKT 296 (531)
Q Consensus 237 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~-~g~--~~~ad-~VV~aa~~~~~ 296 (531)
..|...|.+.+++.|++|+++++|++|..++ |+|++|... +|+ .+.++ .||+|+|....
T Consensus 208 ~~l~~~l~~~~~~~gv~i~~~~~v~~Li~~~-g~v~Gv~~~~~g~~~~i~A~~aVIlAtGG~~~ 270 (557)
T PRK12844 208 AALIGRMLEAALAAGVPLWTNTPLTELIVED-GRVVGVVVVRDGREVLIRARRGVLLASGGFGH 270 (557)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEEeC-CEEEEEEEEECCeEEEEEecceEEEecCCccC
Confidence 4688899999999999999999999999887 899998774 453 46785 69999987763
No 137
>PLN02697 lycopene epsilon cyclase
Probab=98.99 E-value=3.6e-09 Score=106.91 Aligned_cols=57 Identities=11% Similarity=0.102 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChHh
Q 048009 237 GSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYK 295 (531)
Q Consensus 237 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~~ 295 (531)
..+.+.|.+.+.+.|+++ ++++|++|..++ +.+..+++.+|.++.|+.||.|.|++.
T Consensus 192 ~~L~~~Ll~~a~~~GV~~-~~~~V~~I~~~~-~~~~vv~~~dG~~i~A~lVI~AdG~~S 248 (529)
T PLN02697 192 TLLHEELLRRCVESGVSY-LSSKVDRITEAS-DGLRLVACEDGRVIPCRLATVASGAAS 248 (529)
T ss_pred HHHHHHHHHHHHhcCCEE-EeeEEEEEEEcC-CcEEEEEEcCCcEEECCEEEECCCcCh
Confidence 467788888888899998 678999998876 555445677888899999999999887
No 138
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.99 E-value=6.4e-09 Score=107.89 Aligned_cols=59 Identities=14% Similarity=0.096 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeC---CCc--EEEcCeEEecCChHh
Q 048009 237 GSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLA---DGA--QVHSSIVLSNATPYK 295 (531)
Q Consensus 237 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~---~g~--~~~ad~VV~aa~~~~ 295 (531)
..|...|.+.+.+.|++++.++.|+++..+++|++.||... +|+ .+.++.||+|+|...
T Consensus 148 ~~l~~~L~~~~~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~ 211 (591)
T PRK07057 148 HALLHTLYQQNVAAKTQFFVEWMALDLIRDADGDVLGVTALEMETGDVYILEAKTTLFATGGAG 211 (591)
T ss_pred HHHHHHHHHHHHhcCCEEEeCcEEEEEEEcCCCeEEEEEEEEcCCCeEEEEECCeEEECCCCcc
Confidence 46888998888899999999999999987643888888763 454 578999999999876
No 139
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=98.99 E-value=1.1e-08 Score=104.75 Aligned_cols=58 Identities=22% Similarity=0.298 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHHc-CcEEEcCcceeEEEecCCCceeEEEeC-CCc--EEEcC-eEEecCChHh
Q 048009 237 GSVSMAIGSAAREA-GAHIVTRAEVSQLMINDSGRVNGVQLA-DGA--QVHSS-IVLSNATPYK 295 (531)
Q Consensus 237 ~~l~~~l~~~~~~~-G~~i~~~~~V~~I~~~~~g~~~~V~~~-~g~--~~~ad-~VV~aa~~~~ 295 (531)
..+...+.+.+.+. |++|+++++|++|..++ ++|++|... +|+ .+.|+ .||+|+|.+.
T Consensus 173 ~~l~~~l~~~~~~~~gv~i~~~t~~~~Li~~~-g~v~Gv~~~~~g~~~~i~A~k~VIlAtGG~~ 235 (513)
T PRK12837 173 RALIGRFLAALARFPNARLRLNTPLVELVVED-GRVVGAVVERGGERRRVRARRGVLLAAGGFE 235 (513)
T ss_pred HHHHHHHHHHHHhCCCCEEEeCCEEEEEEecC-CEEEEEEEEECCcEEEEEeCceEEEeCCCcc
Confidence 35677777766654 99999999999998876 899998764 343 57786 6999999875
No 140
>PRK07588 hypothetical protein; Provisional
Probab=98.98 E-value=4.9e-09 Score=104.25 Aligned_cols=61 Identities=15% Similarity=0.163 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChHhHHhhcC
Q 048009 238 SVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYKTFMDLV 301 (531)
Q Consensus 238 ~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~~~~~~ll 301 (531)
.|.+.|.+.+. .|++|+++++|++|+.++ +.+. |++++|+++.+|.||.|.|.++...+.+
T Consensus 104 ~l~~~L~~~~~-~~v~i~~~~~v~~i~~~~-~~v~-v~~~~g~~~~~d~vIgADG~~S~vR~~~ 164 (391)
T PRK07588 104 DLAAAIYTAID-GQVETIFDDSIATIDEHR-DGVR-VTFERGTPRDFDLVIGADGLHSHVRRLV 164 (391)
T ss_pred HHHHHHHHhhh-cCeEEEeCCEEeEEEECC-CeEE-EEECCCCEEEeCEEEECCCCCccchhhc
Confidence 56666666553 479999999999999876 5554 8888999899999999999888766643
No 141
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=98.98 E-value=1.1e-08 Score=102.81 Aligned_cols=65 Identities=17% Similarity=0.223 Sum_probs=53.0
Q ss_pred cccCchHHHHHHHHHHHHHcCcEEEcCcceeEEEecC-CCceeEEEeCC-CcEEEcCeEEecCChHh
Q 048009 231 YVEGGMGSVSMAIGSAAREAGAHIVTRAEVSQLMIND-SGRVNGVQLAD-GAQVHSSIVLSNATPYK 295 (531)
Q Consensus 231 ~~~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~-~g~~~~V~~~~-g~~~~ad~VV~aa~~~~ 295 (531)
++.++...+.+.|.+.+++.|++|+++++|++|..++ ++++++|...+ +.++.++.||+|+|...
T Consensus 117 ~~~~~g~~l~~~L~~~a~~~Gv~i~~~~~v~~l~~~~~~g~v~gv~~~~~~~~i~ak~VIlAtGG~~ 183 (432)
T TIGR02485 117 FLRGGGKALTNALYSSAERLGVEIRYGIAVDRIPPEAFDGAHDGPLTTVGTHRITTQALVLAAGGLG 183 (432)
T ss_pred eecCCHHHHHHHHHHHHHHcCCEEEeCCEEEEEEecCCCCeEEEEEEcCCcEEEEcCEEEEcCCCcc
Confidence 4455667899999999999999999999999998762 37788877653 34789999999999653
No 142
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.98 E-value=2.3e-09 Score=111.07 Aligned_cols=58 Identities=24% Similarity=0.351 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEe---CCCc--EEEcCeEEecCChHh
Q 048009 237 GSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQL---ADGA--QVHSSIVLSNATPYK 295 (531)
Q Consensus 237 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~---~~g~--~~~ad~VV~aa~~~~ 295 (531)
..+...|.+.+++.|++|++++.|+++..++ |++.||.. .+|+ .+.|+.||+|+|.+.
T Consensus 135 ~~i~~~L~~~~~~~gi~i~~~t~v~~L~~~~-g~v~Gv~~~~~~~g~~~~i~AkaVVlATGG~~ 197 (575)
T PRK05945 135 HAILHELVNNLRRYGVTIYDEWYVMRLILED-NQAKGVVMYHIADGRLEVVRAKAVMFATGGYG 197 (575)
T ss_pred HHHHHHHHHHHhhCCCEEEeCcEEEEEEEEC-CEEEEEEEEEcCCCeEEEEECCEEEECCCCCc
Confidence 4788899998999999999999999998876 88888764 3564 578999999999876
No 143
>PRK07804 L-aspartate oxidase; Provisional
Probab=98.98 E-value=8.9e-09 Score=105.87 Aligned_cols=59 Identities=29% Similarity=0.386 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeC-------CC-cEEEcCeEEecCChHh
Q 048009 237 GSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLA-------DG-AQVHSSIVLSNATPYK 295 (531)
Q Consensus 237 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~-------~g-~~~~ad~VV~aa~~~~ 295 (531)
..+.+.|.+.+++.|++|+.++.|++|..+++|++.+|.+. ++ ..+.|+.||+|+|...
T Consensus 144 ~~i~~~L~~~~~~~gV~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~~~~~g~~~i~Ak~VIlATGG~~ 210 (541)
T PRK07804 144 AEVQRALDAAVRADPLDIREHALALDLLTDGTGAVAGVTLHVLGEGSPDGVGAVHAPAVVLATGGLG 210 (541)
T ss_pred HHHHHHHHHHHHhCCCEEEECeEeeeeEEcCCCeEEEEEEEeccCCCCCcEEEEEcCeEEECCCCCC
Confidence 47889999999999999999999999988753688888763 22 2578999999999876
No 144
>PRK12839 hypothetical protein; Provisional
Probab=98.98 E-value=1.1e-08 Score=105.52 Aligned_cols=60 Identities=22% Similarity=0.367 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeC--CCc-EE-EcCeEEecCChHhH
Q 048009 237 GSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLA--DGA-QV-HSSIVLSNATPYKT 296 (531)
Q Consensus 237 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~--~g~-~~-~ad~VV~aa~~~~~ 296 (531)
..|+..|.+.+++.|++|++++.|++|..+++|+|++|... +|+ .+ .++.||+|+|.+..
T Consensus 214 ~~l~~~L~~~a~~~Gv~i~~~t~v~~Li~~~~g~V~GV~~~~~~g~~~i~aak~VVLAtGGf~~ 277 (572)
T PRK12839 214 TALTGRLLRSADDLGVDLRVSTSATSLTTDKNGRVTGVRVQGPDGAVTVEATRGVVLATGGFPN 277 (572)
T ss_pred HHHHHHHHHHHHHCCCEEEcCCEEEEEEECCCCcEEEEEEEeCCCcEEEEeCCEEEEcCCCccc
Confidence 46888899999999999999999999987644899998764 444 23 45789999998763
No 145
>PRK06175 L-aspartate oxidase; Provisional
Probab=98.98 E-value=5.2e-09 Score=104.53 Aligned_cols=58 Identities=12% Similarity=0.162 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHH-cCcEEEcCcceeEEEecCCCceeEEEe-CCCc--EEEcCeEEecCChHh
Q 048009 237 GSVSMAIGSAARE-AGAHIVTRAEVSQLMINDSGRVNGVQL-ADGA--QVHSSIVLSNATPYK 295 (531)
Q Consensus 237 ~~l~~~l~~~~~~-~G~~i~~~~~V~~I~~~~~g~~~~V~~-~~g~--~~~ad~VV~aa~~~~ 295 (531)
..+.+.|.+.+++ .|++|+++++|++|..++ +++.+|.. .+++ .+.|+.||+|+|...
T Consensus 128 ~~l~~~L~~~~~~~~gV~i~~~t~v~~Li~~~-~~v~Gv~~~~~g~~~~i~Ak~VILAtGG~~ 189 (433)
T PRK06175 128 KKVEKILLKKVKKRKNITIIENCYLVDIIEND-NTCIGAICLKDNKQINIYSKVTILATGGIG 189 (433)
T ss_pred HHHHHHHHHHHHhcCCCEEEECcEeeeeEecC-CEEEEEEEEECCcEEEEEcCeEEEccCccc
Confidence 4678888877775 499999999999998776 88888653 3454 589999999999754
No 146
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=98.97 E-value=3.5e-09 Score=105.03 Aligned_cols=64 Identities=16% Similarity=0.262 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHH-cCcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChHhHHhhcCC
Q 048009 237 GSVSMAIGSAARE-AGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYKTFMDLVP 302 (531)
Q Consensus 237 ~~l~~~l~~~~~~-~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~~~~~~ll~ 302 (531)
..+.+.|.+.+.+ .|++++.+++|++|..++ +.+. |++++|+++.||.||.|.|.+..+.+.+.
T Consensus 105 ~~l~~~L~~~~~~~~gv~~~~~~~v~~i~~~~-~~~~-v~~~~g~~~~ad~vV~AdG~~S~vr~~l~ 169 (382)
T TIGR01984 105 ADLGQALLSRLALLTNIQLYCPARYKEIIRNQ-DYVR-VTLDNGQQLRAKLLIAADGANSKVRELLS 169 (382)
T ss_pred HHHHHHHHHHHHhCCCcEEEcCCeEEEEEEcC-CeEE-EEECCCCEEEeeEEEEecCCChHHHHHcC
Confidence 4788888888888 499999999999998776 5544 77888888999999999998876666653
No 147
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=98.97 E-value=1.6e-07 Score=89.10 Aligned_cols=57 Identities=25% Similarity=0.322 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChH
Q 048009 237 GSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPY 294 (531)
Q Consensus 237 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~ 294 (531)
..+++.+.+.+++.|++|+++|+|+.|...+ +.+.+|++++|+++.+|+||+|.|-.
T Consensus 173 ~~vvkni~~~l~~~G~ei~f~t~VeDi~~~~-~~~~~v~~~~g~~i~~~~vvlA~Grs 229 (486)
T COG2509 173 PKVVKNIREYLESLGGEIRFNTEVEDIEIED-NEVLGVKLTKGEEIEADYVVLAPGRS 229 (486)
T ss_pred HHHHHHHHHHHHhcCcEEEeeeEEEEEEecC-CceEEEEccCCcEEecCEEEEccCcc
Confidence 4788999999999999999999999999988 77788999999999999999987743
No 148
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=98.97 E-value=1.4e-08 Score=105.59 Aligned_cols=58 Identities=19% Similarity=0.247 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEe---CCCc--EEEcCeEEecCChHh
Q 048009 237 GSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQL---ADGA--QVHSSIVLSNATPYK 295 (531)
Q Consensus 237 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~---~~g~--~~~ad~VV~aa~~~~ 295 (531)
..+...|.+.+++.|++|++++.|++|..++ |++.+|.. .+|+ .+.|+.||+|+|...
T Consensus 129 ~~i~~~L~~~~~~~gv~i~~~~~v~~L~~~~-g~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGG~~ 191 (566)
T TIGR01812 129 HALLHTLYEQCLKLGVSFFNEYFALDLIHDD-GRVRGVVAYDLKTGEIVFFRAKAVVLATGGYG 191 (566)
T ss_pred HHHHHHHHHHHHHcCCEEEeccEEEEEEEeC-CEEEEEEEEECCCCcEEEEECCeEEECCCccc
Confidence 3678888888888899999999999999876 88888765 3564 578999999999876
No 149
>PRK08013 oxidoreductase; Provisional
Probab=98.97 E-value=3e-09 Score=105.88 Aligned_cols=63 Identities=14% Similarity=0.228 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHc-CcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChHhHHhhcCC
Q 048009 238 SVSMAIGSAAREA-GAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYKTFMDLVP 302 (531)
Q Consensus 238 ~l~~~l~~~~~~~-G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~~~~~~ll~ 302 (531)
.|-+.|.+.+++. |++++++++|++|+.++ +.+ .|++.+|++++||.||-|-|.++...+.+.
T Consensus 112 ~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~-~~v-~v~~~~g~~i~a~lvVgADG~~S~vR~~~~ 175 (400)
T PRK08013 112 VIHYALWQKAQQSSDITLLAPAELQQVAWGE-NEA-FLTLKDGSMLTARLVVGADGANSWLRNKAD 175 (400)
T ss_pred HHHHHHHHHHhcCCCcEEEcCCeeEEEEecC-CeE-EEEEcCCCEEEeeEEEEeCCCCcHHHHHcC
Confidence 5777777777775 79999999999998776 444 377889999999999999998887777663
No 150
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=98.96 E-value=7.6e-10 Score=112.38 Aligned_cols=49 Identities=37% Similarity=0.618 Sum_probs=43.1
Q ss_pred CCCCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCCCCceeecccccCC
Q 048009 15 EKKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAVTEELIPG 64 (531)
Q Consensus 15 ~~~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~GG~~~s~~~~~g 64 (531)
|.+|||+|||||++|++||..|++.|++|+|+|+ +.+||.|....|.+.
T Consensus 1 m~~yDvvIIG~G~aGl~aA~~l~~~g~~v~lie~-~~~GG~~~~~gc~ps 49 (460)
T PRK06292 1 MEKYDVIVIGAGPAGYVAARRAAKLGKKVALIEK-GPLGGTCLNVGCIPS 49 (460)
T ss_pred CCcccEEEECCCHHHHHHHHHHHHCCCeEEEEeC-CccccceeccceeeH
Confidence 3569999999999999999999999999999999 789999876655543
No 151
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=98.96 E-value=5e-10 Score=113.35 Aligned_cols=58 Identities=17% Similarity=0.204 Sum_probs=47.7
Q ss_pred hHHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChHh
Q 048009 236 MGSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYK 295 (531)
Q Consensus 236 ~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~~ 295 (531)
...+...+.+.++++|++++++++|++|..++ +.+. |.+.+|+++.+|.||+++|...
T Consensus 217 d~~~~~~l~~~L~~~gV~i~~~~~v~~v~~~~-~~~~-v~~~~g~~l~~D~vl~a~G~~p 274 (466)
T PRK07845 217 DADAAEVLEEVFARRGMTVLKRSRAESVERTG-DGVV-VTLTDGRTVEGSHALMAVGSVP 274 (466)
T ss_pred CHHHHHHHHHHHHHCCcEEEcCCEEEEEEEeC-CEEE-EEECCCcEEEecEEEEeecCCc
Confidence 34677888889999999999999999998765 5443 7777888899999999888554
No 152
>PLN02463 lycopene beta cyclase
Probab=98.96 E-value=6.2e-09 Score=103.54 Aligned_cols=56 Identities=16% Similarity=0.249 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChHh
Q 048009 237 GSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYK 295 (531)
Q Consensus 237 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~~ 295 (531)
..+.+.|.+.+.+.|++++ +++|++|..++ +++ .|++++|+++.||.||.|.|...
T Consensus 114 ~~L~~~Ll~~~~~~GV~~~-~~~V~~I~~~~-~~~-~V~~~dG~~i~A~lVI~AdG~~s 169 (447)
T PLN02463 114 KKLKSKMLERCIANGVQFH-QAKVKKVVHEE-SKS-LVVCDDGVKIQASLVLDATGFSR 169 (447)
T ss_pred HHHHHHHHHHHhhcCCEEE-eeEEEEEEEcC-CeE-EEEECCCCEEEcCEEEECcCCCc
Confidence 4677788888888999986 57999999876 554 58899998899999999998765
No 153
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=98.96 E-value=4.4e-09 Score=104.53 Aligned_cols=64 Identities=16% Similarity=0.146 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChHhHHhhcCC
Q 048009 237 GSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYKTFMDLVP 302 (531)
Q Consensus 237 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~~~~~~ll~ 302 (531)
..+.+.|.+.+.+.++..+++++|+++..++ +.+. |++++|+++.+|.||.|.|.++.+.+.+.
T Consensus 111 ~~l~~~L~~~~~~~~~~~~~~~~v~~i~~~~-~~~~-v~~~~g~~~~a~~vI~AdG~~S~vr~~~g 174 (388)
T PRK07494 111 WLLNRALEARVAELPNITRFGDEAESVRPRE-DEVT-VTLADGTTLSARLVVGADGRNSPVREAAG 174 (388)
T ss_pred HHHHHHHHHHHhcCCCcEEECCeeEEEEEcC-CeEE-EEECCCCEEEEeEEEEecCCCchhHHhcC
Confidence 3677888888887765558899999998876 5554 88888988999999999998876655543
No 154
>PRK08401 L-aspartate oxidase; Provisional
Probab=98.96 E-value=9.7e-09 Score=103.84 Aligned_cols=56 Identities=21% Similarity=0.334 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChHh
Q 048009 237 GSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYK 295 (531)
Q Consensus 237 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~~ 295 (531)
..+.+.|.+.+++.|++++.+ .|+.+..++ +++.+|.. +|+.+.++.||+|+|.+.
T Consensus 120 ~~i~~~L~~~~~~~gv~i~~~-~v~~l~~~~-g~v~Gv~~-~g~~i~a~~VVLATGG~~ 175 (466)
T PRK08401 120 KHIIKILYKHARELGVNFIRG-FAEELAIKN-GKAYGVFL-DGELLKFDATVIATGGFS 175 (466)
T ss_pred HHHHHHHHHHHHhcCCEEEEe-EeEEEEeeC-CEEEEEEE-CCEEEEeCeEEECCCcCc
Confidence 468889999999999999876 888888766 88888877 566799999999999887
No 155
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=98.95 E-value=5.8e-09 Score=103.76 Aligned_cols=63 Identities=16% Similarity=0.251 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHc-CcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChHhHHhhcCC
Q 048009 238 SVSMAIGSAAREA-GAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYKTFMDLVP 302 (531)
Q Consensus 238 ~l~~~l~~~~~~~-G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~~~~~~ll~ 302 (531)
.+-+.|.+.+++. |++++.+++|+++..++ +.+ .|++.+|++++||.||.|.|.++.+.+.+.
T Consensus 113 ~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~-~~~-~v~~~~g~~~~a~~vI~AdG~~S~vR~~~~ 176 (391)
T PRK08020 113 VLQLALWQALEAHPNVTLRCPASLQALQRDD-DGW-ELTLADGEEIQAKLVIGADGANSQVRQMAG 176 (391)
T ss_pred HHHHHHHHHHHcCCCcEEEcCCeeEEEEEcC-CeE-EEEECCCCEEEeCEEEEeCCCCchhHHHcC
Confidence 5667777777776 99999999999998776 544 478888888999999999999987766654
No 156
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=98.95 E-value=8.9e-10 Score=110.05 Aligned_cols=40 Identities=43% Similarity=0.718 Sum_probs=34.2
Q ss_pred cEEEECCChhHHHHHHHHHHcCCcEEEEccCCCCCceeec
Q 048009 19 DALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAVT 58 (531)
Q Consensus 19 dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~GG~~~s 58 (531)
||||||||++|++||+.+++.|.+|+|+|+.+.+||...+
T Consensus 1 DVVVvGgG~aG~~AAi~AAr~G~~VlLiE~~~~lGG~~t~ 40 (428)
T PF12831_consen 1 DVVVVGGGPAGVAAAIAAARAGAKVLLIEKGGFLGGMATS 40 (428)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTS-EEEE-SSSSSTGGGGG
T ss_pred CEEEECccHHHHHHHHHHHHCCCEEEEEECCccCCCcceE
Confidence 8999999999999999999999999999999999998754
No 157
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=98.95 E-value=6.9e-09 Score=102.74 Aligned_cols=62 Identities=11% Similarity=0.193 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHc-CcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChHhHHhhcC
Q 048009 238 SVSMAIGSAAREA-GAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYKTFMDLV 301 (531)
Q Consensus 238 ~l~~~l~~~~~~~-G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~~~~~~ll 301 (531)
.|-..|.+.+.+. |++++.+++|++++.++ +.+. |++++|+++++|.||.|.|..+...+.+
T Consensus 111 ~l~~~L~~~~~~~~~i~i~~~~~v~~~~~~~-~~~~-v~~~~g~~~~~~lvIgADG~~S~vR~~~ 173 (384)
T PRK08849 111 LIQLGLWQQFAQYPNLTLMCPEKLADLEFSA-EGNR-VTLESGAEIEAKWVIGADGANSQVRQLA 173 (384)
T ss_pred HHHHHHHHHHHhCCCeEEECCCceeEEEEcC-CeEE-EEECCCCEEEeeEEEEecCCCchhHHhc
Confidence 3555566655554 69999999999999876 5544 8889999999999999999988766655
No 158
>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.95 E-value=1e-09 Score=99.49 Aligned_cols=258 Identities=15% Similarity=0.139 Sum_probs=138.6
Q ss_pred CCCCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCCCCceeecccccCCeeecccchhhhcchhhhhhcCcccccchhh
Q 048009 15 EKKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAVTEELIPGFKFSRCSYLQSLLRPSLIKCGTRIGETWNE 94 (531)
Q Consensus 15 ~~~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~GG~~~s~~~~~g~~~d~g~~~~~~~~~~~~~~gl~~~~~~~~ 94 (531)
..+||..|||||.+|+++|.+.++.|.+|.|+|..-.+||.|...+|.|....-.++... .......++|+..+ +
T Consensus 18 ~k~fDylvIGgGSGGvasARrAa~~GAkv~l~E~~f~lGGTCVn~GCVPKKvm~~~a~~~-~~~~da~~yG~~~~----~ 92 (478)
T KOG0405|consen 18 VKDFDYLVIGGGSGGVASARRAASHGAKVALCELPFGLGGTCVNVGCVPKKVMWYAADYS-EEMEDAKDYGFPIN----E 92 (478)
T ss_pred ccccceEEEcCCcchhHHhHHHHhcCceEEEEecCCCcCceEEeeccccceeEEehhhhh-HHhhhhhhcCCccc----c
Confidence 458999999999999999999999999999999988999999998887764433322110 00011111133210 0
Q ss_pred hccchhhhHHH-HHHHHHHHHHHHHHHhhcCCCcccccCCCcchhhhhhhh---hhh-h-hHHHHHHHHHhcChhhHHHH
Q 048009 95 VVEAKSIIVYA-IFEDQLDKFSQFVDLLFDSSPPELLQGSSSYSHQFKNKI---RNS-A-FWAHCLRRAISLGQKDLVEF 168 (531)
Q Consensus 95 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~-~~~~~~~~~~~~~~~~~~~~ 168 (531)
. ..-++..+. .....+.++....+..+.....+.+.+.+.|.....-.. ++. . +..+.+..+.+-.+. .+.+
T Consensus 93 ~-~~fdW~~ik~krdayi~RLngIY~~~L~k~~V~~i~G~a~f~~~~~v~V~~~d~~~~~Ytak~iLIAtGg~p~-~PnI 170 (478)
T KOG0405|consen 93 E-GSFDWKVIKQKRDAYILRLNGIYKRNLAKAAVKLIEGRARFVSPGEVEVEVNDGTKIVYTAKHILIATGGRPI-IPNI 170 (478)
T ss_pred c-cCCcHHHHHhhhhHHHHHHHHHHHhhccccceeEEeeeEEEcCCCceEEEecCCeeEEEecceEEEEeCCccC-CCCC
Confidence 0 111222221 122345666666666676666777777777665443222 110 0 111111111111000 0000
Q ss_pred HHHHhccHHHHhhcccCChhHHHH--HhhhhhhccCCCCCCCChHHHHHHHHhhcc---CCCCCccccccCchHHHHHHH
Q 048009 169 VDLLLSPASKVLNKWFETDVLKAT--LATDAVIGTMSSVHTPGSGYVLLHHVMGET---DGNPGIWSYVEGGMGSVSMAI 243 (531)
Q Consensus 169 ~~~~~~~~~~~l~~~~~~~~l~~~--~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~gG~~~l~~~l 243 (531)
....+.-.-+.+|+-+..... +.+.+|++-. +..+...++.. ..... ...++-...+.+.+
T Consensus 171 ---pG~E~gidSDgff~Lee~Pkr~vvvGaGYIavE---------~Agi~~gLgsethlfiR~~--kvLR~FD~~i~~~v 236 (478)
T KOG0405|consen 171 ---PGAELGIDSDGFFDLEEQPKRVVVVGAGYIAVE---------FAGIFAGLGSETHLFIRQE--KVLRGFDEMISDLV 236 (478)
T ss_pred ---CchhhccccccccchhhcCceEEEEccceEEEE---------hhhHHhhcCCeeEEEEecc--hhhcchhHHHHHHH
Confidence 000011011223433333222 1233444310 11111111100 00000 13455567788888
Q ss_pred HHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChH
Q 048009 244 GSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPY 294 (531)
Q Consensus 244 ~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~ 294 (531)
.+.++..|++++.++.++++....+|... +.+..|....+|.+++|+|-.
T Consensus 237 ~~~~~~~ginvh~~s~~~~v~K~~~g~~~-~i~~~~~i~~vd~llwAiGR~ 286 (478)
T KOG0405|consen 237 TEHLEGRGINVHKNSSVTKVIKTDDGLEL-VITSHGTIEDVDTLLWAIGRK 286 (478)
T ss_pred HHHhhhcceeecccccceeeeecCCCceE-EEEeccccccccEEEEEecCC
Confidence 89999999999999999999987645444 556667655699999998854
No 159
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=98.95 E-value=8.4e-09 Score=107.27 Aligned_cols=58 Identities=17% Similarity=0.276 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHHcC-cEEEcCcceeEEEecCCCceeEEEe---CCCc--EEEcCeEEecCChHh
Q 048009 237 GSVSMAIGSAAREAG-AHIVTRAEVSQLMINDSGRVNGVQL---ADGA--QVHSSIVLSNATPYK 295 (531)
Q Consensus 237 ~~l~~~l~~~~~~~G-~~i~~~~~V~~I~~~~~g~~~~V~~---~~g~--~~~ad~VV~aa~~~~ 295 (531)
..+...|.+.++++| ++|+.++.|++|..++ +++++|.. .+|+ .+.|+.||+|+|.+.
T Consensus 132 ~~~~~~L~~~a~~~ggV~i~~~~~v~~Li~~~-g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~ 195 (608)
T PRK06854 132 ESYKPIVAEAAKKALGDNVLNRVFITDLLVDD-NRIAGAVGFSVRENKFYVFKAKAVIVATGGAA 195 (608)
T ss_pred HHHHHHHHHHHHhcCCCEEEeCCEEEEEEEeC-CEEEEEEEEEccCCcEEEEECCEEEECCCchh
Confidence 357777888887776 9999999999998776 88888753 3554 689999999999876
No 160
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=98.94 E-value=1.5e-08 Score=103.93 Aligned_cols=56 Identities=21% Similarity=0.245 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChHh
Q 048009 238 SVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYK 295 (531)
Q Consensus 238 ~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~~ 295 (531)
++.+.+.+.+++.|++++++++|++|..++ +. ..|++.+|+++.+|.||+|+|...
T Consensus 267 ~l~~~l~~~~~~~gv~i~~~~~V~~I~~~~-~~-~~V~~~~g~~i~a~~vViAtG~~~ 322 (517)
T PRK15317 267 KLAAALEEHVKEYDVDIMNLQRASKLEPAA-GL-IEVELANGAVLKAKTVILATGARW 322 (517)
T ss_pred HHHHHHHHHHHHCCCEEEcCCEEEEEEecC-Ce-EEEEECCCCEEEcCEEEECCCCCc
Confidence 566667777888899999999999998865 44 347788888899999999999754
No 161
>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis [].
Probab=98.94 E-value=1.8e-08 Score=97.52 Aligned_cols=57 Identities=26% Similarity=0.409 Sum_probs=48.6
Q ss_pred CCcEEEECCChhHHHHHHHHHHc----CCcEEEEccCCCCCceeeccc-ccCCeeecccchh
Q 048009 17 KWDALVIGGGHNGLTAAAYLARA----GLSVAVLERRHVIGGAAVTEE-LIPGFKFSRCSYL 73 (531)
Q Consensus 17 ~~dvvIIGaGiaGL~aA~~L~~~----G~~V~v~E~~~~~GG~~~s~~-~~~g~~~d~g~~~ 73 (531)
..++=|||+|+|+|+||.+|-+. |.+|+|+|+.+.+||.+-+.+ ...||..-.|...
T Consensus 2 ~~~AyivGsGiAsLAAAvfLIrDa~~pg~nIhIlE~~~~~GGsldg~g~~~~GYv~RgGR~~ 63 (500)
T PF06100_consen 2 NKKAYIVGSGIASLAAAVFLIRDAKMPGENIHILEELDVPGGSLDGAGDPENGYVIRGGRMM 63 (500)
T ss_pred CceEEEECCCHHHHHhhhhhhccCCCCccceEEEeCCCCCCCcccCCCCCCCCeeecCCccc
Confidence 35788999999999999999986 688999999999999998766 4678888777654
No 162
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=98.94 E-value=1.4e-08 Score=104.16 Aligned_cols=56 Identities=11% Similarity=0.167 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChHh
Q 048009 238 SVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYK 295 (531)
Q Consensus 238 ~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~~ 295 (531)
.+.+.+.+.+++.|++++++++|++|..++ +. ..|++.+|+.+.+|+||+|+|...
T Consensus 268 ~l~~~l~~~l~~~gv~i~~~~~V~~I~~~~-~~-~~v~~~~g~~i~~d~lIlAtGa~~ 323 (515)
T TIGR03140 268 QLAANLEEHIKQYPIDLMENQRAKKIETED-GL-IVVTLESGEVLKAKSVIVATGARW 323 (515)
T ss_pred HHHHHHHHHHHHhCCeEEcCCEEEEEEecC-Ce-EEEEECCCCEEEeCEEEECCCCCc
Confidence 455666777778899999999999998765 44 347788888899999999999754
No 163
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=98.93 E-value=1.6e-08 Score=105.81 Aligned_cols=58 Identities=19% Similarity=0.255 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeC---CCc--EEEcCeEEecCChHh
Q 048009 237 GSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLA---DGA--QVHSSIVLSNATPYK 295 (531)
Q Consensus 237 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~---~g~--~~~ad~VV~aa~~~~ 295 (531)
..+...|.+.+++.|++|+.++.|++|..++ |++.||... +|+ .+.|+.||+|+|...
T Consensus 158 ~~l~~~L~~~~~~~gv~i~~~~~~~~Li~~~-g~v~Gv~~~~~~~G~~~~i~AkaVVLATGG~g 220 (657)
T PRK08626 158 HTMLYAVDNEAIKLGVPVHDRKEAIALIHDG-KRCYGAVVRCLITGELRAYVAKATLIATGGYG 220 (657)
T ss_pred HHHHHHHHHHHHhCCCEEEeeEEEEEEEEEC-CEEEEEEEEEcCCCcEEEEEcCeEEECCCccc
Confidence 4677788888889999999999999999877 888887763 565 467999999999876
No 164
>PRK09126 hypothetical protein; Provisional
Probab=98.93 E-value=9.9e-09 Score=102.19 Aligned_cols=62 Identities=16% Similarity=0.294 Sum_probs=47.8
Q ss_pred HHHHHHHHHHH-HcCcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChHhHHhhcC
Q 048009 238 SVSMAIGSAAR-EAGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYKTFMDLV 301 (531)
Q Consensus 238 ~l~~~l~~~~~-~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~~~~~~ll 301 (531)
.+.+.|.+.+. +.|++|+.+++|++++.++ +.+ .|++++|+++.||.||.|.|......+.+
T Consensus 111 ~l~~~l~~~~~~~~g~~i~~~~~v~~~~~~~-~~~-~v~~~~g~~~~a~~vI~AdG~~S~vr~~~ 173 (392)
T PRK09126 111 LIRRAAYEAVSQQDGIELLTGTRVTAVRTDD-DGA-QVTLANGRRLTARLLVAADSRFSATRRQL 173 (392)
T ss_pred HHHHHHHHHHhhCCCcEEEcCCeEEEEEEcC-CeE-EEEEcCCCEEEeCEEEEeCCCCchhhHhc
Confidence 45555555553 4689999999999998766 544 48888898999999999999877655555
No 165
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=98.93 E-value=1.7e-08 Score=104.21 Aligned_cols=42 Identities=43% Similarity=0.627 Sum_probs=39.0
Q ss_pred CCCcEEEECCChhHHHHHHHHHHcCCcEEEEccCC--CCCceee
Q 048009 16 KKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRH--VIGGAAV 57 (531)
Q Consensus 16 ~~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~--~~GG~~~ 57 (531)
.++||+|||+|.+||+||+.+++.|.+|+|+||.+ .+||.+.
T Consensus 3 ~~~DVvVVG~G~AGl~AAl~Aa~~G~~VivlEK~~~~~~GG~s~ 46 (549)
T PRK12834 3 MDADVIVVGAGLAGLVAAAELADAGKRVLLLDQENEANLGGQAF 46 (549)
T ss_pred ccCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCCCCCcee
Confidence 46899999999999999999999999999999999 7888764
No 166
>PRK08244 hypothetical protein; Provisional
Probab=98.93 E-value=1.1e-08 Score=104.86 Aligned_cols=63 Identities=22% Similarity=0.225 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeC--CC-cEEEcCeEEecCChHhHHhhcCC
Q 048009 238 SVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLA--DG-AQVHSSIVLSNATPYKTFMDLVP 302 (531)
Q Consensus 238 ~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~--~g-~~~~ad~VV~aa~~~~~~~~ll~ 302 (531)
.+-+.|.+.+++.|++|+.+++|++|..++ +.+. |++. +| +++++|+||.|.|.++...+.+.
T Consensus 101 ~le~~L~~~~~~~gv~v~~~~~v~~i~~~~-~~v~-v~~~~~~g~~~i~a~~vVgADG~~S~vR~~lg 166 (493)
T PRK08244 101 ETEKVLEEHARSLGVEIFRGAEVLAVRQDG-DGVE-VVVRGPDGLRTLTSSYVVGADGAGSIVRKQAG 166 (493)
T ss_pred HHHHHHHHHHHHcCCeEEeCCEEEEEEEcC-CeEE-EEEEeCCccEEEEeCEEEECCCCChHHHHhcC
Confidence 456667777888899999999999998876 5443 4443 56 47999999999999887766653
No 167
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=98.92 E-value=6.1e-09 Score=103.58 Aligned_cols=63 Identities=16% Similarity=0.132 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHHcC-cEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChHhHHhhcCC
Q 048009 237 GSVSMAIGSAAREAG-AHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYKTFMDLVP 302 (531)
Q Consensus 237 ~~l~~~l~~~~~~~G-~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~~~~~~ll~ 302 (531)
..+.+.|.+.+++.| ++++ +++|++|..++ +.+ .|++.+|+++.||.||.|.|.+..+.+.+.
T Consensus 111 ~~l~~~L~~~~~~~~~v~~~-~~~v~~i~~~~-~~~-~v~~~~g~~~~a~~vI~adG~~S~vr~~~~ 174 (388)
T PRK07608 111 SLIERALWAALRFQPNLTWF-PARAQGLEVDP-DAA-TLTLADGQVLRADLVVGADGAHSWVRSQAG 174 (388)
T ss_pred HHHHHHHHHHHHhCCCcEEE-cceeEEEEecC-CeE-EEEECCCCEEEeeEEEEeCCCCchHHHhcC
Confidence 467888888888888 8998 99999998766 554 488888888999999999998876666553
No 168
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=98.92 E-value=1.7e-08 Score=100.68 Aligned_cols=47 Identities=32% Similarity=0.495 Sum_probs=42.3
Q ss_pred ccCCCCcEEEECCChhHHHHHHHHHHcCCc-EEEEccCCCCCceeecc
Q 048009 13 LKEKKWDALVIGGGHNGLTAAAYLARAGLS-VAVLERRHVIGGAAVTE 59 (531)
Q Consensus 13 ~~~~~~dvvIIGaGiaGL~aA~~L~~~G~~-V~v~E~~~~~GG~~~s~ 59 (531)
+.+.++||+|||||++||++|++|.++|.. ++||||++.+||....+
T Consensus 4 ~~~~~~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~~~Gg~W~~~ 51 (443)
T COG2072 4 GVATHTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDVGGTWRYN 51 (443)
T ss_pred CcCCcccEEEECCCHHHHHHHHHHHHcCCCcEEEEEccCCcCCcchhc
Confidence 335689999999999999999999999988 99999999999986653
No 169
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.92 E-value=2.5e-08 Score=104.19 Aligned_cols=58 Identities=12% Similarity=0.206 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHHc--------C-----cEEEcCcceeEEEecCCCceeEEEe---CCCc--EEEcCeEEecCChHh
Q 048009 237 GSVSMAIGSAAREA--------G-----AHIVTRAEVSQLMINDSGRVNGVQL---ADGA--QVHSSIVLSNATPYK 295 (531)
Q Consensus 237 ~~l~~~l~~~~~~~--------G-----~~i~~~~~V~~I~~~~~g~~~~V~~---~~g~--~~~ad~VV~aa~~~~ 295 (531)
..+...|.+.+++. | ++|+.++.|+++..++ |++.||.. .+|+ .+.|+.||+|+|...
T Consensus 138 ~~i~~~L~~~~~~~~~~~~~~~G~~~~~v~i~~~~~v~~L~~~~-g~v~Gv~~~~~~~g~~~~i~Ak~VVlATGG~~ 213 (626)
T PRK07803 138 LELIRTLQQKIVSLQQEDHAELGDYEARIKVFAECTITELLKDG-GRIAGAFGYWRESGRFVLFEAPAVVLATGGIG 213 (626)
T ss_pred HHHHHHHHHHHHhhhccccccccCCcCceEEEeCCEEEEEEEEC-CEEEEEEEEECCCCeEEEEEcCeEEECCCccc
Confidence 46888888878776 7 9999999999999876 88888764 3554 578999999999765
No 170
>PRK06185 hypothetical protein; Provisional
Probab=98.91 E-value=6.6e-09 Score=104.00 Aligned_cols=64 Identities=22% Similarity=0.298 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHc-CcEEEcCcceeEEEecCCCceeEEEe--CCCc-EEEcCeEEecCChHhHHhhcCC
Q 048009 238 SVSMAIGSAAREA-GAHIVTRAEVSQLMINDSGRVNGVQL--ADGA-QVHSSIVLSNATPYKTFMDLVP 302 (531)
Q Consensus 238 ~l~~~l~~~~~~~-G~~i~~~~~V~~I~~~~~g~~~~V~~--~~g~-~~~ad~VV~aa~~~~~~~~ll~ 302 (531)
.+.+.|.+.+.+. |++++.+++|+++..++ +++.+|++ .+|+ ++.||.||.|.|.++.+.+.+.
T Consensus 109 ~l~~~L~~~~~~~~~v~i~~~~~v~~~~~~~-~~v~~v~~~~~~g~~~i~a~~vI~AdG~~S~vr~~~g 176 (407)
T PRK06185 109 DFLDFLAEEASAYPNFTLRMGAEVTGLIEEG-GRVTGVRARTPDGPGEIRADLVVGADGRHSRVRALAG 176 (407)
T ss_pred HHHHHHHHHHhhCCCcEEEeCCEEEEEEEeC-CEEEEEEEEcCCCcEEEEeCEEEECCCCchHHHHHcC
Confidence 5667777777664 89999999999999877 77665554 4564 7999999999999886666653
No 171
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=98.91 E-value=1.7e-09 Score=112.07 Aligned_cols=52 Identities=31% Similarity=0.476 Sum_probs=46.2
Q ss_pred CCCcEEEECCChhHHHHHHHHHHcCCcEEEEccC-CCCCceeecccccCCeee
Q 048009 16 KKWDALVIGGGHNGLTAAAYLARAGLSVAVLERR-HVIGGAAVTEELIPGFKF 67 (531)
Q Consensus 16 ~~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~-~~~GG~~~s~~~~~g~~~ 67 (531)
.+|||+|||+|.+|.+||..+++.|.+|+|+|+. ..+||.|-..+|.|...+
T Consensus 115 ~~yDviVIG~G~gG~~aA~~aa~~G~kV~lie~~~~~lGGtCvn~GCiPsK~l 167 (659)
T PTZ00153 115 EEYDVGIIGCGVGGHAAAINAMERGLKVIIFTGDDDSIGGTCVNVGCIPSKAL 167 (659)
T ss_pred ccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCccccceeEeCCcchHHH
Confidence 3689999999999999999999999999999984 479999999888876443
No 172
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.91 E-value=9.2e-09 Score=102.58 Aligned_cols=62 Identities=16% Similarity=0.277 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHH-cCcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChHhHHhhcC
Q 048009 238 SVSMAIGSAARE-AGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYKTFMDLV 301 (531)
Q Consensus 238 ~l~~~l~~~~~~-~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~~~~~~ll 301 (531)
.+.+.|.+.+.+ .|++++++++|++|..++ +.+. |++.+|..+.+|.||.|.|.+..+.+.+
T Consensus 113 ~l~~~l~~~~~~~~g~~~~~~~~v~~i~~~~-~~~~-v~~~~g~~~~a~~vI~AdG~~S~vr~~~ 175 (395)
T PRK05732 113 DVGQRLFALLDKAPGVTLHCPARVANVERTQ-GSVR-VTLDDGETLTGRLLVAADGSHSALREAL 175 (395)
T ss_pred HHHHHHHHHHhcCCCcEEEcCCEEEEEEEcC-CeEE-EEECCCCEEEeCEEEEecCCChhhHHhh
Confidence 455666666655 479999999999998766 5544 8888888899999999999887665554
No 173
>PRK07395 L-aspartate oxidase; Provisional
Probab=98.90 E-value=1.7e-08 Score=103.60 Aligned_cols=59 Identities=15% Similarity=0.269 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHHc-CcEEEcCcceeEEEecC-CCceeEEEeC-CCc--EEEcCeEEecCChHh
Q 048009 237 GSVSMAIGSAAREA-GAHIVTRAEVSQLMIND-SGRVNGVQLA-DGA--QVHSSIVLSNATPYK 295 (531)
Q Consensus 237 ~~l~~~l~~~~~~~-G~~i~~~~~V~~I~~~~-~g~~~~V~~~-~g~--~~~ad~VV~aa~~~~ 295 (531)
..+...|.+.+++. |++|++++.|+++..++ +|++.||... +|. .+.|+.||+|+|...
T Consensus 134 ~~i~~~L~~~~~~~~gi~i~~~~~v~~Li~~~~~g~v~Gv~~~~~g~~~~i~AkaVILATGG~~ 197 (553)
T PRK07395 134 RAIVTTLTEQVLQRPNIEIISQALALSLWLEPETGRCQGISLLYQGQITWLRAGAVILATGGGG 197 (553)
T ss_pred HHHHHHHHHHHhhcCCcEEEECcChhhheecCCCCEEEEEEEEECCeEEEEEcCEEEEcCCCCc
Confidence 46888888888754 89999999999998763 2788888664 454 378999999999864
No 174
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=98.90 E-value=1.1e-08 Score=102.23 Aligned_cols=63 Identities=8% Similarity=0.205 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHc-CcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChHhHHhhcCC
Q 048009 238 SVSMAIGSAAREA-GAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYKTFMDLVP 302 (531)
Q Consensus 238 ~l~~~l~~~~~~~-G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~~~~~~ll~ 302 (531)
.+-+.|.+.+.+. |++++++++|++|..++ +.+ .|++++|+++.||.||.|-|..+.+.+.+.
T Consensus 112 ~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~-~~~-~v~~~~g~~~~a~lvIgADG~~S~vR~~~~ 175 (405)
T PRK08850 112 VIQLALLEQVQKQDNVTLLMPARCQSIAVGE-SEA-WLTLDNGQALTAKLVVGADGANSWLRRQMD 175 (405)
T ss_pred HHHHHHHHHHhcCCCeEEEcCCeeEEEEeeC-CeE-EEEECCCCEEEeCEEEEeCCCCChhHHHcC
Confidence 4556677766664 79999999999998776 544 488889999999999999998876666653
No 175
>PRK08275 putative oxidoreductase; Provisional
Probab=98.89 E-value=2e-08 Score=103.80 Aligned_cols=59 Identities=17% Similarity=0.236 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEe---CCCc--EEEcCeEEecCChHh
Q 048009 237 GSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQL---ADGA--QVHSSIVLSNATPYK 295 (531)
Q Consensus 237 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~---~~g~--~~~ad~VV~aa~~~~ 295 (531)
..+.+.|.+.+++.|++|+.++.|++|..+++|++.||.. .+|+ .+.|+.||+|+|...
T Consensus 137 ~~i~~~L~~~~~~~gv~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~~ 200 (554)
T PRK08275 137 HDIKKVLYRQLKRARVLITNRIMATRLLTDADGRVAGALGFDCRTGEFLVIRAKAVILCCGAAG 200 (554)
T ss_pred HHHHHHHHHHHHHCCCEEEcceEEEEEEEcCCCeEEEEEEEecCCCcEEEEECCEEEECCCCcc
Confidence 4678889898999999999999999999873388888864 3564 578999999999875
No 176
>PRK06753 hypothetical protein; Provisional
Probab=98.89 E-value=1.5e-08 Score=100.23 Aligned_cols=61 Identities=18% Similarity=0.204 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChHhHHhhcCC
Q 048009 238 SVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYKTFMDLVP 302 (531)
Q Consensus 238 ~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~~~~~~ll~ 302 (531)
.|.+.|.+.+. +.+|+++++|++|+.++ +++. |++++|+++.+|.||-|-|.++...+.+.
T Consensus 99 ~l~~~L~~~~~--~~~i~~~~~v~~i~~~~-~~v~-v~~~~g~~~~~~~vigadG~~S~vR~~~~ 159 (373)
T PRK06753 99 TLIDIIKSYVK--EDAIFTGKEVTKIENET-DKVT-IHFADGESEAFDLCIGADGIHSKVRQSVN 159 (373)
T ss_pred HHHHHHHHhCC--CceEEECCEEEEEEecC-CcEE-EEECCCCEEecCEEEECCCcchHHHHHhC
Confidence 56666665544 36899999999998766 6554 88889988999999999998887777654
No 177
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=98.89 E-value=2.1e-08 Score=102.06 Aligned_cols=58 Identities=21% Similarity=0.247 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHH-cCcEEEcCcceeEEEecCCCceeEEEeCC-C--cEEEcCeEEecCChHh
Q 048009 237 GSVSMAIGSAARE-AGAHIVTRAEVSQLMINDSGRVNGVQLAD-G--AQVHSSIVLSNATPYK 295 (531)
Q Consensus 237 ~~l~~~l~~~~~~-~G~~i~~~~~V~~I~~~~~g~~~~V~~~~-g--~~~~ad~VV~aa~~~~ 295 (531)
..+.+.|.+.+++ .|++|+.++.|++|..++ +++.+|.+.+ + ..+.++.||+|+|.+.
T Consensus 128 ~~l~~~L~~~~~~~~gi~i~~~~~v~~l~~~~-g~v~Gv~~~~~~~~~~i~A~~VVlAtGG~~ 189 (488)
T TIGR00551 128 REVITTLVKKALNHPNIRIIEGENALDLLIET-GRVVGVWVWNRETVETCHADAVVLATGGAG 189 (488)
T ss_pred HHHHHHHHHHHHhcCCcEEEECeEeeeeeccC-CEEEEEEEEECCcEEEEEcCEEEECCCccc
Confidence 4688889988887 699999999999998876 8888877654 3 2689999999999887
No 178
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=98.89 E-value=1.1e-08 Score=101.68 Aligned_cols=57 Identities=11% Similarity=0.098 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChHh
Q 048009 237 GSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYK 295 (531)
Q Consensus 237 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~~ 295 (531)
..+.+.|.+.+.+.|++++ +++|+.+..++ +..+.|++.+|+++.|+.||.|+|.+.
T Consensus 85 ~~l~~~l~~~~~~~gv~~~-~~~v~~i~~~~-~~~~~v~~~~g~~~~a~~VI~A~G~~s 141 (388)
T TIGR01790 85 TRLHEELLQKCPEGGVLWL-ERKAIHAEADG-VALSTVYCAGGQRIQARLVIDARGFGP 141 (388)
T ss_pred HHHHHHHHHHHHhcCcEEE-ccEEEEEEecC-CceeEEEeCCCCEEEeCEEEECCCCch
Confidence 4677888888888899886 66899988774 444558888888899999999999876
No 179
>PRK06126 hypothetical protein; Provisional
Probab=98.89 E-value=1.7e-08 Score=104.74 Aligned_cols=63 Identities=6% Similarity=0.090 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHc-CcEEEcCcceeEEEecCCCceeEEEe---CCCc--EEEcCeEEecCChHhHHhhcCC
Q 048009 238 SVSMAIGSAAREA-GAHIVTRAEVSQLMINDSGRVNGVQL---ADGA--QVHSSIVLSNATPYKTFMDLVP 302 (531)
Q Consensus 238 ~l~~~l~~~~~~~-G~~i~~~~~V~~I~~~~~g~~~~V~~---~~g~--~~~ad~VV~aa~~~~~~~~ll~ 302 (531)
.+-..|.+.+++. |++|+++++|++|..++ +.+. +++ .+|+ ++.+|+||.|.|.++...+.+.
T Consensus 127 ~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~-~~v~-v~~~~~~~g~~~~i~ad~vVgADG~~S~VR~~lg 195 (545)
T PRK06126 127 YLEPILLEHAAAQPGVTLRYGHRLTDFEQDA-DGVT-ATVEDLDGGESLTIRADYLVGCDGARSAVRRSLG 195 (545)
T ss_pred HHHHHHHHHHHhCCCceEEeccEEEEEEECC-CeEE-EEEEECCCCcEEEEEEEEEEecCCcchHHHHhcC
Confidence 4566677777664 79999999999999877 5554 444 3464 6899999999999987777654
No 180
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=98.88 E-value=2.9e-08 Score=102.61 Aligned_cols=63 Identities=17% Similarity=0.186 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHc-CcEEEcCcceeEEEecCCCceeEEEeC--CC--cEEEcCeEEecCChHhHHhhcCC
Q 048009 238 SVSMAIGSAAREA-GAHIVTRAEVSQLMINDSGRVNGVQLA--DG--AQVHSSIVLSNATPYKTFMDLVP 302 (531)
Q Consensus 238 ~l~~~l~~~~~~~-G~~i~~~~~V~~I~~~~~g~~~~V~~~--~g--~~~~ad~VV~aa~~~~~~~~ll~ 302 (531)
.+-+.|.+.+.+. |++|+++++|++|+.++ +.+. |+++ +| ++++||.||-|-|..+...+.+.
T Consensus 114 ~le~~L~~~~~~~~gv~v~~g~~v~~i~~~~-~~v~-v~~~~~~G~~~~i~ad~vVgADG~~S~vR~~lg 181 (538)
T PRK06183 114 LLEAVLRAGLARFPHVRVRFGHEVTALTQDD-DGVT-VTLTDADGQRETVRARYVVGCDGANSFVRRTLG 181 (538)
T ss_pred HHHHHHHHHHHhCCCcEEEcCCEEEEEEEcC-CeEE-EEEEcCCCCEEEEEEEEEEecCCCchhHHHHcC
Confidence 4556666767664 89999999999999877 5544 5554 56 37899999999999988777664
No 181
>PRK07236 hypothetical protein; Provisional
Probab=98.88 E-value=3.7e-08 Score=97.64 Aligned_cols=60 Identities=13% Similarity=0.158 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChHhHHhhcC
Q 048009 238 SVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYKTFMDLV 301 (531)
Q Consensus 238 ~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~~~~~~ll 301 (531)
.+.+.|.+.+ .+++|+++++|++|+.++ +.+. |++++|+++.+|.||.|-|.++...+.+
T Consensus 101 ~l~~~L~~~~--~~~~i~~~~~v~~i~~~~-~~v~-v~~~~g~~~~ad~vIgADG~~S~vR~~l 160 (386)
T PRK07236 101 VLYRALRAAF--PAERYHLGETLVGFEQDG-DRVT-ARFADGRRETADLLVGADGGRSTVRAQL 160 (386)
T ss_pred HHHHHHHHhC--CCcEEEcCCEEEEEEecC-CeEE-EEECCCCEEEeCEEEECCCCCchHHHHh
Confidence 4555555433 246899999999999876 5554 8889999999999999988888666554
No 182
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=98.88 E-value=1.5e-08 Score=101.56 Aligned_cols=61 Identities=13% Similarity=0.111 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChHhHHhhcC
Q 048009 237 GSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYKTFMDLV 301 (531)
Q Consensus 237 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~~~~~~ll 301 (531)
..|.+.|.+.+. .+.++++++|++|..++ +.+ .|++++|+++.+|.||.|.|.++...+.+
T Consensus 105 ~~l~~~L~~~~~--~~~v~~~~~v~~i~~~~-~~~-~v~~~~g~~~~ad~vVgADG~~S~vR~~l 165 (414)
T TIGR03219 105 ADFLDALLKHLP--EGIASFGKRATQIEEQA-EEV-QVLFTDGTEYRCDLLIGADGIKSALRDYV 165 (414)
T ss_pred HHHHHHHHHhCC--CceEEcCCEEEEEEecC-CcE-EEEEcCCCEEEeeEEEECCCccHHHHHHh
Confidence 357777776653 35688999999998876 554 48888998999999999999998776654
No 183
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=98.88 E-value=4.3e-08 Score=109.32 Aligned_cols=43 Identities=33% Similarity=0.506 Sum_probs=39.9
Q ss_pred CCCCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCCCCceee
Q 048009 15 EKKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAV 57 (531)
Q Consensus 15 ~~~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~GG~~~ 57 (531)
+.++||+|||+|.|||+||+.+++.|.+|+|+||.+..||.+.
T Consensus 407 t~~~DVvVVG~G~AGl~AAi~Aae~Ga~VivlEK~~~~GG~s~ 449 (1167)
T PTZ00306 407 SLPARVIVVGGGLAGCSAAIEAASCGAQVILLEKEAKLGGNSA 449 (1167)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEEccCCCCCchh
Confidence 4569999999999999999999999999999999999999764
No 184
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=98.87 E-value=9.3e-08 Score=92.75 Aligned_cols=63 Identities=11% Similarity=0.150 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCCC--cEEEcCeEEecCChHhHHhhcC
Q 048009 237 GSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADG--AQVHSSIVLSNATPYKTFMDLV 301 (531)
Q Consensus 237 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g--~~~~ad~VV~aa~~~~~~~~ll 301 (531)
..+.++|.+.++++|++|+.+++|.++..++ +++++|.+.++ ..+.||+||+|+|.|.. ..|+
T Consensus 263 ~RL~~aL~~~~~~~Gg~il~g~~V~~i~~~~-~~v~~V~t~~g~~~~l~AD~vVLAaGaw~S-~gL~ 327 (419)
T TIGR03378 263 IRLEEALKHRFEQLGGVMLPGDRVLRAEFEG-NRVTRIHTRNHRDIPLRADHFVLASGSFFS-NGLV 327 (419)
T ss_pred HHHHHHHHHHHHHCCCEEEECcEEEEEEeeC-CeEEEEEecCCccceEECCEEEEccCCCcC-HHHH
Confidence 4789999999999999999999999999888 88888887776 37999999999999931 4554
No 185
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=98.87 E-value=1.8e-07 Score=92.06 Aligned_cols=57 Identities=18% Similarity=0.212 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCCCc--EEEcCeEEecCChHh
Q 048009 238 SVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADGA--QVHSSIVLSNATPYK 295 (531)
Q Consensus 238 ~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~--~~~ad~VV~aa~~~~ 295 (531)
.+.+.|.+.+++.|++|+++++|+++..++ +++..+...+|+ .+.+|.||+|+|...
T Consensus 260 rL~~aL~~~l~~~Gv~I~~g~~V~~v~~~~-~~V~~v~~~~g~~~~i~AD~VVLAtGrf~ 318 (422)
T PRK05329 260 RLQNALRRAFERLGGRIMPGDEVLGAEFEG-GRVTAVWTRNHGDIPLRARHFVLATGSFF 318 (422)
T ss_pred HHHHHHHHHHHhCCCEEEeCCEEEEEEEeC-CEEEEEEeeCCceEEEECCEEEEeCCCcc
Confidence 799999999999999999999999999877 777666655554 589999999999654
No 186
>PLN02815 L-aspartate oxidase
Probab=98.87 E-value=4.2e-08 Score=101.18 Aligned_cols=59 Identities=14% Similarity=0.192 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHc-CcEEEcCcceeEEEecCCC---ceeEEEeC---CCc--EEEcCeEEecCChHh
Q 048009 237 GSVSMAIGSAAREA-GAHIVTRAEVSQLMINDSG---RVNGVQLA---DGA--QVHSSIVLSNATPYK 295 (531)
Q Consensus 237 ~~l~~~l~~~~~~~-G~~i~~~~~V~~I~~~~~g---~~~~V~~~---~g~--~~~ad~VV~aa~~~~ 295 (531)
..+...|.+.++++ |++|+.++.++++..+++| +|+||... +|+ .+.|+.||+|+|...
T Consensus 155 ~~i~~~L~~~~~~~~~i~i~~~~~~~~Li~~~~g~~~~v~Gv~~~~~~~g~~~~i~AkaVILATGG~g 222 (594)
T PLN02815 155 REIERALLEAVKNDPNITFFEHHFAIDLLTSQDGGSIVCHGADVLDTRTGEVVRFISKVTLLASGGAG 222 (594)
T ss_pred HHHHHHHHHHHHhcCCCEEEeceEhheeeeecCCCccEEEEEEEEEcCCCeEEEEEeceEEEcCCcce
Confidence 46888888888765 8999999999999875424 27888753 454 568999999999776
No 187
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=98.86 E-value=1.3e-09 Score=110.15 Aligned_cols=46 Identities=33% Similarity=0.566 Sum_probs=41.3
Q ss_pred CcEEEECCChhHHHHHHHHHHcCCcEEEEccCCCCCceeecccccCC
Q 048009 18 WDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAVTEELIPG 64 (531)
Q Consensus 18 ~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~GG~~~s~~~~~g 64 (531)
++|+|||||.+|++||..|++.|.+|+|+|++ .+||.|....|.+.
T Consensus 1 ~~vvVIG~G~aG~~aA~~~~~~g~~V~lie~~-~~GG~c~n~gciPs 46 (458)
T PRK06912 1 SKLVVIGGGPAGYVAAITAAQNGKNVTLIDEA-DLGGTCLNEGCMPT 46 (458)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEECC-cccccCCCCccccc
Confidence 38999999999999999999999999999996 58999987777664
No 188
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.85 E-value=4.6e-08 Score=100.98 Aligned_cols=59 Identities=10% Similarity=0.160 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEe---CCCc--EEEcCeEEecCChHh
Q 048009 237 GSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQL---ADGA--QVHSSIVLSNATPYK 295 (531)
Q Consensus 237 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~---~~g~--~~~ad~VV~aa~~~~ 295 (531)
..+...|.+.+++.|++|++++.|+++..+++++++||.. .+|+ .+.|+.||+|+|...
T Consensus 134 ~~i~~~L~~~~~~~gv~i~~~t~v~~Li~~~~~~v~Gv~~~~~~~g~~~~i~AkaVIlATGG~~ 197 (543)
T PRK06263 134 HEMMMGLMEYLIKERIKILEEVMAIKLIVDENREVIGAIFLDLRNGEIFPIYAKATILATGGAG 197 (543)
T ss_pred HHHHHHHHHHHhcCCCEEEeCeEeeeeEEeCCcEEEEEEEEECCCCcEEEEEcCcEEECCCCCC
Confidence 4688888888888999999999999998876234888764 3564 578999999999776
No 189
>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]
Probab=98.85 E-value=6.8e-09 Score=96.46 Aligned_cols=59 Identities=22% Similarity=0.398 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCC------C---------cEEEcCeEEecCChHh
Q 048009 237 GSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLAD------G---------AQVHSSIVLSNATPYK 295 (531)
Q Consensus 237 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~------g---------~~~~ad~VV~aa~~~~ 295 (531)
.+++..|-+.+++.|++|..+-.+.+|..+.||.|.||.++| | -++.|+.-|+|-|-+-
T Consensus 183 ~~~v~wLg~kAEe~GvEiyPg~aaSevly~edgsVkGiaT~D~GI~k~G~pKd~FerGme~hak~TifAEGc~G 256 (621)
T KOG2415|consen 183 GQLVRWLGEKAEELGVEIYPGFAASEVLYDEDGSVKGIATNDVGISKDGAPKDTFERGMEFHAKVTIFAEGCHG 256 (621)
T ss_pred HHHHHHHHHHHHhhCceeccccchhheeEcCCCcEeeEeeccccccCCCCccccccccceecceeEEEeccccc
Confidence 589999999999999999999999999998879999998875 2 2577888888766544
No 190
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=98.84 E-value=6.4e-09 Score=102.16 Aligned_cols=65 Identities=18% Similarity=0.231 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeE-EEeC-CCc--EEEcCeEEecCChHhHHhhcCC
Q 048009 237 GSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNG-VQLA-DGA--QVHSSIVLSNATPYKTFMDLVP 302 (531)
Q Consensus 237 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~-V~~~-~g~--~~~ad~VV~aa~~~~~~~~ll~ 302 (531)
..+-+.|.+.+++.|++|+.+++|+++..+. +.+.. +... +|+ +++||.||-|-|.++...+.+.
T Consensus 111 ~~l~~~L~~~~~~~gv~i~~~~~v~~~~~d~-~~~~~~~~~~~~g~~~~i~adlvVgADG~~S~vR~~l~ 179 (356)
T PF01494_consen 111 PELDRALREEAEERGVDIRFGTRVVSIEQDD-DGVTVVVRDGEDGEEETIEADLVVGADGAHSKVRKQLG 179 (356)
T ss_dssp HHHHHHHHHHHHHHTEEEEESEEEEEEEEET-TEEEEEEEETCTCEEEEEEESEEEE-SGTT-HHHHHTT
T ss_pred HHHHHhhhhhhhhhhhhheeeeecccccccc-cccccccccccCCceeEEEEeeeecccCcccchhhhcc
Confidence 4688889999999999999999999998877 55442 2222 343 6899999999999987776654
No 191
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.84 E-value=4.8e-08 Score=101.41 Aligned_cols=59 Identities=14% Similarity=0.116 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHHcC----cEEEcCcceeEEEecCCCceeEEEeCC---Cc--EEEcCeEEecCChHh
Q 048009 237 GSVSMAIGSAAREAG----AHIVTRAEVSQLMINDSGRVNGVQLAD---GA--QVHSSIVLSNATPYK 295 (531)
Q Consensus 237 ~~l~~~l~~~~~~~G----~~i~~~~~V~~I~~~~~g~~~~V~~~~---g~--~~~ad~VV~aa~~~~ 295 (531)
..|...|.+.+++.+ ++++.++.++++..+++|+|.||...+ |+ .+.|+.||+|+|...
T Consensus 133 ~~i~~~L~~~~~~~~~~~~i~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~ 200 (589)
T PRK08641 133 QQLLYALDEQVRRYEVAGLVTKYEGWEFLGAVLDDEGVCRGIVAQDLFTMEIESFPADAVIMATGGPG 200 (589)
T ss_pred HHHHHHHHHHHHhhhccCCcEEEeeEEEEEEEECCCCEEEEEEEEECCCCcEEEEECCEEEECCCCCc
Confidence 367778877776554 789999999999875448999988743 43 478999999999876
No 192
>PRK06475 salicylate hydroxylase; Provisional
Probab=98.84 E-value=4.8e-08 Score=97.29 Aligned_cols=64 Identities=13% Similarity=0.163 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHHc-CcEEEcCcceeEEEecCCCceeEEEe---CCCcEEEcCeEEecCChHhHHhhcCC
Q 048009 237 GSVSMAIGSAAREA-GAHIVTRAEVSQLMINDSGRVNGVQL---ADGAQVHSSIVLSNATPYKTFMDLVP 302 (531)
Q Consensus 237 ~~l~~~l~~~~~~~-G~~i~~~~~V~~I~~~~~g~~~~V~~---~~g~~~~ad~VV~aa~~~~~~~~ll~ 302 (531)
..|.+.|.+.+.+. |++++++++|+++..++ +.+. |++ .+++++.+|.||-|-|.++...+.++
T Consensus 107 ~~l~~~L~~~~~~~~~i~v~~~~~v~~~~~~~-~~v~-v~~~~~~~~~~~~adlvIgADG~~S~vR~~~~ 174 (400)
T PRK06475 107 ADLQSALLDACRNNPGIEIKLGAEMTSQRQTG-NSIT-ATIIRTNSVETVSAAYLIACDGVWSMLRAKAG 174 (400)
T ss_pred HHHHHHHHHHHHhcCCcEEEECCEEEEEecCC-CceE-EEEEeCCCCcEEecCEEEECCCccHhHHhhcC
Confidence 46778888877664 79999999999998766 5543 444 34457899999999999987777653
No 193
>PRK05868 hypothetical protein; Validated
Probab=98.83 E-value=3.5e-08 Score=97.02 Aligned_cols=61 Identities=15% Similarity=0.136 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChHhHHhhcC
Q 048009 238 SVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYKTFMDLV 301 (531)
Q Consensus 238 ~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~~~~~~ll 301 (531)
.|.+.|.+. ...|++++++++|++|+.++ +.+. |+++||++++||.||-|-|.++...+.+
T Consensus 106 ~L~~~l~~~-~~~~v~i~~~~~v~~i~~~~-~~v~-v~~~dg~~~~adlvIgADG~~S~vR~~~ 166 (372)
T PRK05868 106 DLVELLYGA-TQPSVEYLFDDSISTLQDDG-DSVR-VTFERAAAREFDLVIGADGLHSNVRRLV 166 (372)
T ss_pred HHHHHHHHh-ccCCcEEEeCCEEEEEEecC-CeEE-EEECCCCeEEeCEEEECCCCCchHHHHh
Confidence 455555443 34689999999999998765 5544 8889999999999999999998877765
No 194
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.83 E-value=7.4e-08 Score=100.12 Aligned_cols=58 Identities=16% Similarity=0.151 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHH-cCcEEEcCcceeEEEecCCCceeEEEe---CCCc--EEEcCeEEecCChHh
Q 048009 237 GSVSMAIGSAARE-AGAHIVTRAEVSQLMINDSGRVNGVQL---ADGA--QVHSSIVLSNATPYK 295 (531)
Q Consensus 237 ~~l~~~l~~~~~~-~G~~i~~~~~V~~I~~~~~g~~~~V~~---~~g~--~~~ad~VV~aa~~~~ 295 (531)
..+.+.|.+.+.+ .|++|+.++.|+++..++ +++.||.. .+|+ .+.|+.||+|+|...
T Consensus 137 ~~i~~~L~~~~~~~~gv~i~~~~~v~~Li~~~-g~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~~ 200 (577)
T PRK06069 137 FYIMHTLYSRALRFDNIHFYDEHFVTSLIVEN-GVFKGVTAIDLKRGEFKVFQAKAGIIATGGAG 200 (577)
T ss_pred HHHHHHHHHHHHhcCCCEEEECCEEEEEEEEC-CEEEEEEEEEcCCCeEEEEECCcEEEcCchhc
Confidence 4678888887766 689999999999998876 88888764 3564 578999999999875
No 195
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=98.82 E-value=5.4e-08 Score=100.93 Aligned_cols=64 Identities=16% Similarity=0.195 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHc-CcEEEcCcceeEEEecCCCcee-EEEeCCCc-EEEcCeEEecCChHhHHhhcCC
Q 048009 238 SVSMAIGSAAREA-GAHIVTRAEVSQLMINDSGRVN-GVQLADGA-QVHSSIVLSNATPYKTFMDLVP 302 (531)
Q Consensus 238 ~l~~~l~~~~~~~-G~~i~~~~~V~~I~~~~~g~~~-~V~~~~g~-~~~ad~VV~aa~~~~~~~~ll~ 302 (531)
.+-+.|.+.+.+. |++|+++++|+++..++ +.+. .++..+|. ++.+|.||.|.|.+....+++.
T Consensus 126 ~le~~L~~~~~~~~~v~v~~~~~v~~i~~~~-~~v~v~~~~~~g~~~i~ad~vVgADG~~S~vR~~lg 192 (547)
T PRK08132 126 YVEGYLVERAQALPNIDLRWKNKVTGLEQHD-DGVTLTVETPDGPYTLEADWVIACDGARSPLREMLG 192 (547)
T ss_pred HHHHHHHHHHHhCCCcEEEeCCEEEEEEEcC-CEEEEEEECCCCcEEEEeCEEEECCCCCcHHHHHcC
Confidence 4556666767665 68999999999999876 4443 23334554 6899999999998887777664
No 196
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=98.82 E-value=5e-08 Score=97.65 Aligned_cols=38 Identities=39% Similarity=0.626 Sum_probs=34.8
Q ss_pred ccCCCCcEEEECCChhHHHHHHHHHHcCCcEEEEccCC
Q 048009 13 LKEKKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRH 50 (531)
Q Consensus 13 ~~~~~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~ 50 (531)
+...++||+|||||++|++||+.|+++|++|+|+|++.
T Consensus 35 ~~~~~~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~ 72 (450)
T PLN00093 35 LSGRKLRVAVIGGGPAGACAAETLAKGGIETFLIERKL 72 (450)
T ss_pred cCCCCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Confidence 44557999999999999999999999999999999975
No 197
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=98.82 E-value=2.7e-08 Score=103.35 Aligned_cols=58 Identities=19% Similarity=0.264 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHH----cCcEEEcCcceeEEEecCCCceeEEEeC---CCc--EEEcCeEEecCChHh
Q 048009 238 SVSMAIGSAARE----AGAHIVTRAEVSQLMINDSGRVNGVQLA---DGA--QVHSSIVLSNATPYK 295 (531)
Q Consensus 238 ~l~~~l~~~~~~----~G~~i~~~~~V~~I~~~~~g~~~~V~~~---~g~--~~~ad~VV~aa~~~~ 295 (531)
.+...|.+.+++ .|++|++++.|+++..+++|+|+||... +|+ .+.|+.||+|+|...
T Consensus 130 ~i~~~L~~~~~~~~~~~gV~i~~~t~v~~Li~dd~grV~GV~~~~~~~g~~~~i~AkaVVLATGG~g 196 (603)
T TIGR01811 130 QLLLALDSALRRQIAAGLVEKYEGWEMLDIIVVDGNRARGIIARNLVTGEIETHSADAVILATGGYG 196 (603)
T ss_pred HHHHHHHHHHHhhhccCCcEEEeCcEEEEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEECCCCCc
Confidence 455566555544 3899999999999988653689998864 454 578999999998765
No 198
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=98.81 E-value=4.4e-08 Score=91.90 Aligned_cols=54 Identities=19% Similarity=0.241 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChHh
Q 048009 238 SVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYK 295 (531)
Q Consensus 238 ~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~~ 295 (531)
.|.+.+.+.++..|+++.. ..|.+++..+ + ...|++.+|+ ++|+.||+|+|...
T Consensus 62 ~L~~~~~~~a~~~~~~~~~-~~v~~v~~~~-~-~F~v~t~~~~-~~ak~vIiAtG~~~ 115 (305)
T COG0492 62 ELMEQMKEQAEKFGVEIVE-DEVEKVELEG-G-PFKVKTDKGT-YEAKAVIIATGAGA 115 (305)
T ss_pred HHHHHHHHHHhhcCeEEEE-EEEEEEeecC-c-eEEEEECCCe-EEEeEEEECcCCcc
Confidence 6677777888888988877 6888888765 3 4458888888 99999999999776
No 199
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=98.81 E-value=4.5e-08 Score=96.94 Aligned_cols=66 Identities=18% Similarity=0.147 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeC-CCc--EEEcCeEEecCChHhHHhhcCCC
Q 048009 237 GSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLA-DGA--QVHSSIVLSNATPYKTFMDLVPG 303 (531)
Q Consensus 237 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~-~g~--~~~ad~VV~aa~~~~~~~~ll~~ 303 (531)
..+...|.+.+.+.|++++++++++++...++.. ..|++. ||+ ++++|.||-|-|.++...+.++.
T Consensus 103 ~~l~~~L~~~~~~~g~~~~~~~~~v~~~~~~~~~-~~V~~~~~g~~~~i~adlvIGADG~~S~VR~~l~~ 171 (390)
T TIGR02360 103 TEVTRDLMEAREAAGLTTVYDADDVRLHDLAGDR-PYVTFERDGERHRLDCDFIAGCDGFHGVSRASIPA 171 (390)
T ss_pred HHHHHHHHHHHHhcCCeEEEeeeeEEEEecCCCc-cEEEEEECCeEEEEEeCEEEECCCCchhhHHhcCc
Confidence 3566777777888899999999988886533133 347775 775 68999999999998877776643
No 200
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=98.80 E-value=7.3e-09 Score=93.36 Aligned_cols=68 Identities=25% Similarity=0.330 Sum_probs=56.8
Q ss_pred CCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCCCCceeecccc-cCCe-eecccchhhhcchhhhhhc
Q 048009 17 KWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAVTEEL-IPGF-KFSRCSYLQSLLRPSLIKC 84 (531)
Q Consensus 17 ~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~GG~~~s~~~-~~g~-~~d~g~~~~~~~~~~~~~~ 84 (531)
++|++|||||++|+..|..|++.|++|+|+||++.+||-|.+..+ ..|. ..-.|+|+++-.+..+++.
T Consensus 1 ~fd~lIVGaGlsG~V~A~~a~~~gk~VLIvekR~HIGGNaYde~d~~tGIlvHkYGpHIFHT~~~~Vwdy 70 (374)
T COG0562 1 MFDYLIVGAGLSGAVIAEVAAQLGKRVLIVEKRNHIGGNAYDEADDQTGILVHKYGPHIFHTDNKRVWDY 70 (374)
T ss_pred CCcEEEECCchhHHHHHHHHHHcCCEEEEEeccccCCCccccccCCCCCeEEeeccCceeecCchHHHHH
Confidence 489999999999999999999999999999999999999998663 2563 4467888877666666554
No 201
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=98.80 E-value=5.6e-08 Score=100.71 Aligned_cols=58 Identities=14% Similarity=0.185 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHc-CcEEEcCcceeEEEecCCCceeEEEe---CCCc--EEEcCeEEecCChHh
Q 048009 237 GSVSMAIGSAAREA-GAHIVTRAEVSQLMINDSGRVNGVQL---ADGA--QVHSSIVLSNATPYK 295 (531)
Q Consensus 237 ~~l~~~l~~~~~~~-G~~i~~~~~V~~I~~~~~g~~~~V~~---~~g~--~~~ad~VV~aa~~~~ 295 (531)
..|...|.+.+.+. |++++.++.|+++..++ |++.||.. .+|+ .+.|+.||+|+|...
T Consensus 133 ~~i~~~L~~~~~~~~~i~i~~~~~v~~Li~~~-g~v~Gv~~~~~~~g~~~~i~AkaVIlATGG~~ 196 (582)
T PRK09231 133 FHMLHTLFQTSLKYPQIQRFDEHFVLDILVDD-GHVRGLVAMNMMEGTLVQIRANAVVMATGGAG 196 (582)
T ss_pred HHHHHHHHHHhhcCCCcEEEeCeEEEEEEEeC-CEEEEEEEEEcCCCcEEEEECCEEEECCCCCc
Confidence 36777887777665 79999999999999876 88888654 4664 678999999999866
No 202
>PRK07512 L-aspartate oxidase; Provisional
Probab=98.79 E-value=8.2e-08 Score=98.12 Aligned_cols=58 Identities=24% Similarity=0.361 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHc-CcEEEcCcceeEEEecCCCceeEEEeCC-Cc--EEEcCeEEecCChHh
Q 048009 237 GSVSMAIGSAAREA-GAHIVTRAEVSQLMINDSGRVNGVQLAD-GA--QVHSSIVLSNATPYK 295 (531)
Q Consensus 237 ~~l~~~l~~~~~~~-G~~i~~~~~V~~I~~~~~g~~~~V~~~~-g~--~~~ad~VV~aa~~~~ 295 (531)
..+.+.|.+.+++. |++|+.++.|++|..++ |++++|.+.+ +. .+.|+.||+|+|...
T Consensus 136 ~~l~~~L~~~~~~~~gV~i~~~~~v~~Li~~~-g~v~Gv~~~~~~~~~~i~Ak~VVLATGG~~ 197 (513)
T PRK07512 136 AAIMRALIAAVRATPSITVLEGAEARRLLVDD-GAVAGVLAATAGGPVVLPARAVVLATGGIG 197 (513)
T ss_pred HHHHHHHHHHHHhCCCCEEEECcChhheeecC-CEEEEEEEEeCCeEEEEECCEEEEcCCCCc
Confidence 47888898888775 89999999999998776 8888887753 32 588999999999865
No 203
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=98.79 E-value=6.3e-08 Score=100.04 Aligned_cols=41 Identities=37% Similarity=0.714 Sum_probs=37.0
Q ss_pred CCCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCCCCceee
Q 048009 16 KKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAV 57 (531)
Q Consensus 16 ~~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~GG~~~ 57 (531)
..|||+|||||+|||+||..|+++|++|+|+|++ .+||.+.
T Consensus 3 ~~yDVvIIGgGpAGL~AA~~lar~g~~V~liE~~-~~GG~~~ 43 (555)
T TIGR03143 3 EIYDLIIIGGGPAGLSAGIYAGRAKLDTLIIEKD-DFGGQIT 43 (555)
T ss_pred CcCcEEEECCCHHHHHHHHHHHHCCCCEEEEecC-CCCceEE
Confidence 3599999999999999999999999999999995 6787764
No 204
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.79 E-value=3.1e-08 Score=97.67 Aligned_cols=63 Identities=5% Similarity=0.085 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHHcC-cEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChHhHHhhcCC
Q 048009 237 GSVSMAIGSAAREAG-AHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYKTFMDLVP 302 (531)
Q Consensus 237 ~~l~~~l~~~~~~~G-~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~~~~~~ll~ 302 (531)
..|-+.|.+.+++.+ ++++++++|++|..++ +.+. |.+.++ ++.||.||-|-|..+...+.+.
T Consensus 104 ~~L~~~L~~~~~~~~~v~~~~~~~v~~i~~~~-~~v~-v~~~~~-~~~adlvIgADG~~S~vR~~l~ 167 (374)
T PRK06617 104 SDFKKILLSKITNNPLITLIDNNQYQEVISHN-DYSI-IKFDDK-QIKCNLLIICDGANSKVRSHYF 167 (374)
T ss_pred HHHHHHHHHHHhcCCCcEEECCCeEEEEEEcC-CeEE-EEEcCC-EEeeCEEEEeCCCCchhHHhcC
Confidence 478888888888775 8999999999998876 5544 778777 7999999999999887776653
No 205
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=98.79 E-value=4.3e-08 Score=97.35 Aligned_cols=64 Identities=22% Similarity=0.149 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEe-CCCc--EEEcCeEEecCChHhHHhhcCC
Q 048009 238 SVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQL-ADGA--QVHSSIVLSNATPYKTFMDLVP 302 (531)
Q Consensus 238 ~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~-~~g~--~~~ad~VV~aa~~~~~~~~ll~ 302 (531)
.+.+.|.+.+++.|++++++++|++|...+++. ..|++ .+|+ ++.||.||-|-|..+...+.++
T Consensus 104 ~l~~~Ll~~a~~~gv~v~~~~~v~~i~~~~~~~-~~V~~~~~G~~~~i~ad~vVgADG~~S~vR~~~~ 170 (392)
T PRK08243 104 EVTRDLMAARLAAGGPIRFEASDVALHDFDSDR-PYVTYEKDGEEHRLDCDFIAGCDGFHGVSRASIP 170 (392)
T ss_pred HHHHHHHHHHHhCCCeEEEeeeEEEEEecCCCc-eEEEEEcCCeEEEEEeCEEEECCCCCCchhhhcC
Confidence 566677777778899999999999998623133 34666 4664 6899999999898887777664
No 206
>PRK08071 L-aspartate oxidase; Provisional
Probab=98.78 E-value=8.2e-08 Score=98.07 Aligned_cols=57 Identities=19% Similarity=0.222 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCC--Cc--EEEcCeEEecCChHh
Q 048009 237 GSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLAD--GA--QVHSSIVLSNATPYK 295 (531)
Q Consensus 237 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~--g~--~~~ad~VV~aa~~~~ 295 (531)
..+.+.|.+.++ .|++|+.++.|++|..++ +++.+|...+ |+ .+.|+.||+|+|.+.
T Consensus 130 ~~i~~~L~~~~~-~gV~i~~~~~v~~Li~~~-g~v~Gv~~~~~~g~~~~i~Ak~VVlATGG~~ 190 (510)
T PRK08071 130 KNLLEHLLQELV-PHVTVVEQEMVIDLIIEN-GRCIGVLTKDSEGKLKRYYADYVVLASGGCG 190 (510)
T ss_pred HHHHHHHHHHHh-cCCEEEECeEhhheeecC-CEEEEEEEEECCCcEEEEEcCeEEEecCCCc
Confidence 357888887775 689999999999998776 8888887653 33 578999999999876
No 207
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.78 E-value=1.7e-07 Score=97.32 Aligned_cols=59 Identities=15% Similarity=0.174 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHHcCcEEEcCcceeEEEecCC---CceeEEEe---CCCc--EEEcCeEEecCChHh
Q 048009 237 GSVSMAIGSAAREAGAHIVTRAEVSQLMINDS---GRVNGVQL---ADGA--QVHSSIVLSNATPYK 295 (531)
Q Consensus 237 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~---g~~~~V~~---~~g~--~~~ad~VV~aa~~~~ 295 (531)
..+...|.+.+++.|++|+.++.|++|..+++ |++.||.. .+|+ .+.|+.||+|+|...
T Consensus 140 ~~i~~~L~~~~~~~gv~i~~~~~v~~Li~~~~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~ 206 (583)
T PRK08205 140 HMILQTLYQNCVKHGVEFFNEFYVLDLLLTETPSGPVAAGVVAYELATGEIHVFHAKAVVFATGGSG 206 (583)
T ss_pred HHHHHHHHHHHHhcCCEEEeCCEEEEEEecCCccCCcEEEEEEEEcCCCeEEEEEeCeEEECCCCCc
Confidence 46888899989999999999999999987642 68888865 3554 578999999999876
No 208
>PRK07846 mycothione reductase; Reviewed
Probab=98.78 E-value=7.1e-09 Score=104.32 Aligned_cols=48 Identities=25% Similarity=0.441 Sum_probs=40.8
Q ss_pred CCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCCCCceeecccccCCeee
Q 048009 17 KWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAVTEELIPGFKF 67 (531)
Q Consensus 17 ~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~GG~~~s~~~~~g~~~ 67 (531)
+||++|||||.+|.+||.. +.|.+|+|+|+ +.+||.|-..+|.|...+
T Consensus 1 ~yD~vVIG~G~~g~~aa~~--~~G~~V~lie~-~~~GGtC~n~GCiPsK~l 48 (451)
T PRK07846 1 HYDLIIIGTGSGNSILDER--FADKRIAIVEK-GTFGGTCLNVGCIPTKMF 48 (451)
T ss_pred CCCEEEECCCHHHHHHHHH--HCCCeEEEEeC-CCCCCcccCcCcchhHHH
Confidence 4899999999999999876 45999999998 579999998888776443
No 209
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=98.77 E-value=7.4e-08 Score=99.58 Aligned_cols=58 Identities=17% Similarity=0.154 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHc-CcEEEcCcceeEEEecCCCceeEEEe---CCCc--EEEcCeEEecCChHh
Q 048009 237 GSVSMAIGSAAREA-GAHIVTRAEVSQLMINDSGRVNGVQL---ADGA--QVHSSIVLSNATPYK 295 (531)
Q Consensus 237 ~~l~~~l~~~~~~~-G~~i~~~~~V~~I~~~~~g~~~~V~~---~~g~--~~~ad~VV~aa~~~~ 295 (531)
..|...|.+.+.+. |++++.++.|+++..++ |++.||.. .+|+ .+.|+.||+|+|...
T Consensus 132 ~~i~~~L~~~~~~~~~i~i~~~~~v~~Li~~~-g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~ 195 (580)
T TIGR01176 132 FHMLHTLFQTSLTYPQIMRYDEWFVTDLLVDD-GRVCGLVAIEMAEGRLVTILADAVVLATGGAG 195 (580)
T ss_pred HHHHHHHHHHHHhcCCCEEEeCeEEEEEEeeC-CEEEEEEEEEcCCCcEEEEecCEEEEcCCCCc
Confidence 46888888877764 79999999999999876 88888764 3564 578999999999876
No 210
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=98.77 E-value=1.7e-08 Score=96.21 Aligned_cols=69 Identities=25% Similarity=0.335 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHHc-CcEEEcCcceeEEEec-CCCceeEEEeCC--Cc----EEEcCeEEecCChHhHHhhcCCCCCC
Q 048009 237 GSVSMAIGSAAREA-GAHIVTRAEVSQLMIN-DSGRVNGVQLAD--GA----QVHSSIVLSNATPYKTFMDLVPGNIL 306 (531)
Q Consensus 237 ~~l~~~l~~~~~~~-G~~i~~~~~V~~I~~~-~~g~~~~V~~~~--g~----~~~ad~VV~aa~~~~~~~~ll~~~~~ 306 (531)
......+...+.++ |.+|+++++|++|..+ +++++++|++.+ +. ++.++.||+|||...+ .+||-.+.+
T Consensus 192 ~s~~~~~L~~a~~~~n~~l~~~~~V~~i~~~~~~~~a~gV~~~~~~~~~~~~~~~ak~VIlaAGai~T-p~LLl~SGi 268 (296)
T PF00732_consen 192 SSAATTYLPPALKRPNLTLLTNARVTRIIFDGDGGRATGVEYVDNDGGVQRRIVAAKEVILAAGAIGT-PRLLLRSGI 268 (296)
T ss_dssp BHHHHHHHHHHTTTTTEEEEESEEEEEEEEETTSTEEEEEEEEETTTSEEEEEEEEEEEEE-SHHHHH-HHHHHHTTE
T ss_pred eehhhcccchhhccCCccEEcCcEEEEEeeeccccceeeeeeeecCCcceeeeccceeEEeccCCCCC-hhhhccccc
Confidence 34444444444455 8999999999999775 227888888863 33 4678999999999886 566544334
No 211
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=98.76 E-value=4.9e-08 Score=99.21 Aligned_cols=41 Identities=39% Similarity=0.507 Sum_probs=35.3
Q ss_pred CcEEEECCChhHHHHHHHHHHcCCcEEEEccCCCCCceeec
Q 048009 18 WDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAVT 58 (531)
Q Consensus 18 ~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~GG~~~s 58 (531)
.+|+|||||++||+||..|.+.|++|++|||++.+||..+.
T Consensus 2 krVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~~iGG~W~~ 42 (531)
T PF00743_consen 2 KRVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSDDIGGLWRY 42 (531)
T ss_dssp -EEEEE--SHHHHHHHHHHHHTT-EEEEEESSSSSSGGGCH
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCeEEecCCCCCccCee
Confidence 58999999999999999999999999999999999999754
No 212
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=98.76 E-value=1.3e-06 Score=84.33 Aligned_cols=57 Identities=21% Similarity=0.306 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHH-cCcEEEcCcceeEEEecCCC-ceeEEEeCCC----cEEEcCeEEecCChHh
Q 048009 238 SVSMAIGSAARE-AGAHIVTRAEVSQLMINDSG-RVNGVQLADG----AQVHSSIVLSNATPYK 295 (531)
Q Consensus 238 ~l~~~l~~~~~~-~G~~i~~~~~V~~I~~~~~g-~~~~V~~~~g----~~~~ad~VV~aa~~~~ 295 (531)
.+...|.+.+++ .+++|+.++.+.+|..++ + .+.||.+.+. ..+.++.||+|+|...
T Consensus 134 ~I~~~L~~~v~~~p~I~v~e~~~a~~li~~~-~~~~~Gv~~~~~~~~~~~~~a~~vVLATGG~g 196 (518)
T COG0029 134 EIMTALLKKVRNRPNITVLEGAEALDLIIED-GIGVAGVLVLNRNGELGTFRAKAVVLATGGLG 196 (518)
T ss_pred HHHHHHHHHHhcCCCcEEEecchhhhhhhcC-CceEeEEEEecCCCeEEEEecCeEEEecCCCc
Confidence 688888888876 589999999999999988 6 4558877533 3678899999988654
No 213
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=98.74 E-value=1.5e-07 Score=93.31 Aligned_cols=63 Identities=14% Similarity=0.192 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCC------C--cEEEcCeEEecCChHhHHhhcCC
Q 048009 237 GSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLAD------G--AQVHSSIVLSNATPYKTFMDLVP 302 (531)
Q Consensus 237 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~------g--~~~~ad~VV~aa~~~~~~~~ll~ 302 (531)
..+-+.|.+.+.+.|++++.. .|++|..++ +.+ .|++.+ | .++.||.||.|.|....+.+.+.
T Consensus 92 ~~fd~~L~~~a~~~G~~v~~~-~v~~v~~~~-~~~-~v~~~~~~~~~~~~~~~i~a~~VI~AdG~~S~v~r~lg 162 (388)
T TIGR02023 92 EVFDSYLRERAQKAGAELIHG-LFLKLERDR-DGV-TLTYRTPKKGAGGEKGSVEADVVIGADGANSPVAKELG 162 (388)
T ss_pred HHHHHHHHHHHHhCCCEEEee-EEEEEEEcC-CeE-EEEEEeccccCCCcceEEEeCEEEECCCCCcHHHHHcC
Confidence 356777888888899999765 699998776 544 365543 2 36899999999998886666543
No 214
>PRK09897 hypothetical protein; Provisional
Probab=98.74 E-value=2.4e-07 Score=93.78 Aligned_cols=55 Identities=11% Similarity=0.109 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHcC--cEEEcCcceeEEEecCCCceeEEEeCC-CcEEEcCeEEecCCh
Q 048009 237 GSVSMAIGSAAREAG--AHIVTRAEVSQLMINDSGRVNGVQLAD-GAQVHSSIVLSNATP 293 (531)
Q Consensus 237 ~~l~~~l~~~~~~~G--~~i~~~~~V~~I~~~~~g~~~~V~~~~-g~~~~ad~VV~aa~~ 293 (531)
+...+.+.+.+.+.| ++++.+++|++|..++ +.+. |++.+ |..+.||+||+|+|.
T Consensus 107 ~~~f~~l~~~a~~~G~~V~v~~~~~V~~I~~~~-~g~~-V~t~~gg~~i~aD~VVLAtGh 164 (534)
T PRK09897 107 RDQFLRLVDQARQQKFAVAVYESCQVTDLQITN-AGVM-LATNQDLPSETFDLAVIATGH 164 (534)
T ss_pred HHHHHHHHHHHHHcCCeEEEEECCEEEEEEEeC-CEEE-EEECCCCeEEEcCEEEECCCC
Confidence 345555666677777 7888899999998876 5543 77655 467899999999995
No 215
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process
Probab=98.74 E-value=4.6e-07 Score=87.00 Aligned_cols=64 Identities=19% Similarity=0.263 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHHc-CcEEEcCcceeEEEecCCCceeEEEeC-----CCcEEEcCeEEecCChHhHHhhcCCC
Q 048009 237 GSVSMAIGSAAREA-GAHIVTRAEVSQLMINDSGRVNGVQLA-----DGAQVHSSIVLSNATPYKTFMDLVPG 303 (531)
Q Consensus 237 ~~l~~~l~~~~~~~-G~~i~~~~~V~~I~~~~~g~~~~V~~~-----~g~~~~ad~VV~aa~~~~~~~~ll~~ 303 (531)
+.|.+.|.+.+++. |++++++++|++|...++|.+ .|.+. +..++.|+.|++.||..++ .|+..
T Consensus 181 G~LTr~l~~~l~~~~~~~~~~~~eV~~i~r~~dg~W-~v~~~~~~~~~~~~v~a~FVfvGAGG~aL--~LLqk 250 (488)
T PF06039_consen 181 GALTRQLVEYLQKQKGFELHLNHEVTDIKRNGDGRW-EVKVKDLKTGEKREVRAKFVFVGAGGGAL--PLLQK 250 (488)
T ss_pred HHHHHHHHHHHHhCCCcEEEecCEeCeeEECCCCCE-EEEEEecCCCCeEEEECCEEEECCchHhH--HHHHH
Confidence 58999999999888 999999999999999875654 36653 2347999999999998883 45543
No 216
>PRK07538 hypothetical protein; Provisional
Probab=98.74 E-value=1.8e-07 Score=93.63 Aligned_cols=63 Identities=17% Similarity=0.159 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHH-cC-cEEEcCcceeEEEecCCCceeEEEeCCC-----cEEEcCeEEecCChHhHHhhcCC
Q 048009 238 SVSMAIGSAARE-AG-AHIVTRAEVSQLMINDSGRVNGVQLADG-----AQVHSSIVLSNATPYKTFMDLVP 302 (531)
Q Consensus 238 ~l~~~l~~~~~~-~G-~~i~~~~~V~~I~~~~~g~~~~V~~~~g-----~~~~ad~VV~aa~~~~~~~~ll~ 302 (531)
.|-+.|.+.+.+ .| .+|+++++|+++..++++ +. +.+.++ +++.||.||-|-|.++...+.+.
T Consensus 103 ~l~~~L~~~~~~~~g~~~i~~~~~v~~~~~~~~~-~~-~~~~~~~~g~~~~~~adlvIgADG~~S~vR~~l~ 172 (413)
T PRK07538 103 ELQMLLLDAVRERLGPDAVRTGHRVVGFEQDADV-TV-VFLGDRAGGDLVSVRGDVLIGADGIHSAVRAQLY 172 (413)
T ss_pred HHHHHHHHHHHhhcCCcEEEcCCEEEEEEecCCc-eE-EEEeccCCCccceEEeeEEEECCCCCHHHhhhhc
Confidence 566777777655 46 469999999999877634 22 444332 37999999999999887776653
No 217
>TIGR02352 thiamin_ThiO glycine oxidase ThiO. This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.
Probab=98.71 E-value=8.2e-06 Score=79.48 Aligned_cols=62 Identities=23% Similarity=0.395 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChHhHHhhcCC
Q 048009 237 GSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYKTFMDLVP 302 (531)
Q Consensus 237 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~~~~~~ll~ 302 (531)
..++..|.+.++++|++++.+++|++|..++ +++.+|.+.+| ++.||.||+|+|++. ..|.+
T Consensus 137 ~~l~~~l~~~~~~~g~~~~~~~~v~~i~~~~-~~~~~v~~~~g-~~~a~~vV~a~G~~~--~~l~~ 198 (337)
T TIGR02352 137 RALLKALEKALEKLGVEIIEHTEVQHIEIRG-EKVTAIVTPSG-DVQADQVVLAAGAWA--GELLP 198 (337)
T ss_pred HHHHHHHHHHHHHcCCEEEccceEEEEEeeC-CEEEEEEcCCC-EEECCEEEEcCChhh--hhccc
Confidence 6899999999999999999999999999877 77888888888 599999999999998 45543
No 218
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=98.69 E-value=1.1e-07 Score=95.67 Aligned_cols=66 Identities=12% Similarity=0.201 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHHcC---cEEEcCcceeEEEec-----CCCceeEEEeCCCcEEEcCeEEecCChHhHHhhcCC
Q 048009 237 GSVSMAIGSAAREAG---AHIVTRAEVSQLMIN-----DSGRVNGVQLADGAQVHSSIVLSNATPYKTFMDLVP 302 (531)
Q Consensus 237 ~~l~~~l~~~~~~~G---~~i~~~~~V~~I~~~-----~~g~~~~V~~~~g~~~~ad~VV~aa~~~~~~~~ll~ 302 (531)
..+.+.|.+.+++.+ ++++++++|++|+.+ +++..+.|++.+|++++||.||-|-|..+...+.+.
T Consensus 117 ~~l~~~L~~~~~~~~~~~v~i~~~~~v~~i~~~~~~~~~~~~~v~v~~~~g~~i~a~llVgADG~~S~vR~~~g 190 (437)
T TIGR01989 117 DNIQNSLYNRLQEYNGDNVKILNPARLISVTIPSKYPNDNSNWVHITLSDGQVLYTKLLIGADGSNSNVRKAAN 190 (437)
T ss_pred HHHHHHHHHHHHhCCCCCeEEecCCeeEEEEeccccccCCCCceEEEEcCCCEEEeeEEEEecCCCChhHHHcC
Confidence 356777777777775 899999999999752 112224588899999999999999999987777654
No 219
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=98.68 E-value=1.8e-07 Score=79.41 Aligned_cols=52 Identities=23% Similarity=0.222 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHcCcEEE-cCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCCh
Q 048009 239 VSMAIGSAAREAGAHIV-TRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATP 293 (531)
Q Consensus 239 l~~~l~~~~~~~G~~i~-~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~ 293 (531)
..+.+.+.+ ..|++|. .+.+|++|...+ +.. .|.+.||..+.||+||+|+|.
T Consensus 103 ~~~~~~~~~-~~~i~v~~~~~~V~~i~~~~-~~~-~v~~~~g~~~~~d~VvLa~Gh 155 (156)
T PF13454_consen 103 RFDRLLARL-PAGITVRHVRAEVVDIRRDD-DGY-RVVTADGQSIRADAVVLATGH 155 (156)
T ss_pred HHHHHHHhh-cCCcEEEEEeeEEEEEEEcC-CcE-EEEECCCCEEEeCEEEECCCC
Confidence 333444444 4465543 467999999987 543 588899999999999999874
No 220
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=98.68 E-value=2e-07 Score=96.27 Aligned_cols=58 Identities=19% Similarity=0.224 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHcCcEEEcCcceeEEEecCC--CceeEEEe---CCCc--EEEcCeEEecCChHh
Q 048009 238 SVSMAIGSAAREAGAHIVTRAEVSQLMINDS--GRVNGVQL---ADGA--QVHSSIVLSNATPYK 295 (531)
Q Consensus 238 ~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~--g~~~~V~~---~~g~--~~~ad~VV~aa~~~~ 295 (531)
.+...+...+++.+++|+.++.|+++..+++ |+|+||.. .+|+ .+.|+.||+|+|.+.
T Consensus 127 ~~~r~l~~~l~~~~~~i~~~~~v~~Ll~d~~~~GrV~Gv~~~~~~~g~~~~i~AkaVVLATGG~~ 191 (614)
T TIGR02061 127 SYKPIVAEAAKNALGDIFERIFIVKLLLDKNTPNRIAGAVGFNVRANEVHVFKAKTVIVAAGGAV 191 (614)
T ss_pred hHHHHHHHHHHhCCCeEEcccEEEEEEecCCCCCeEEEEEEEEeCCCcEEEEECCEEEECCCccc
Confidence 4555566667777789999999999998642 68888875 3554 578999999999986
No 221
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=98.67 E-value=6.9e-08 Score=94.87 Aligned_cols=56 Identities=23% Similarity=0.231 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChHh
Q 048009 237 GSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYK 295 (531)
Q Consensus 237 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~~ 295 (531)
..+-+.+.+.+. .++.++++++|++|..++ +. ..|++++|+++.|+.||-|.|+..
T Consensus 87 ~~f~~~l~~~~~-~~~~~~~~~~V~~i~~~~-~~-~~v~~~~g~~i~a~~VvDa~g~~~ 142 (374)
T PF05834_consen 87 ADFYEFLLERAA-AGGVIRLNARVTSIEETG-DG-VLVVLADGRTIRARVVVDARGPSS 142 (374)
T ss_pred HHHHHHHHHHhh-hCCeEEEccEEEEEEecC-ce-EEEEECCCCEEEeeEEEECCCccc
Confidence 467777888887 566788899999999887 43 348899999999999999877544
No 222
>PLN02985 squalene monooxygenase
Probab=98.67 E-value=2.7e-07 Score=93.98 Aligned_cols=63 Identities=13% Similarity=0.205 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHc-CcEEEcCcceeEEEecCCCceeEEEeC--CCc--EEEcCeEEecCChHhHHhhcCC
Q 048009 238 SVSMAIGSAAREA-GAHIVTRAEVSQLMINDSGRVNGVQLA--DGA--QVHSSIVLSNATPYKTFMDLVP 302 (531)
Q Consensus 238 ~l~~~l~~~~~~~-G~~i~~~~~V~~I~~~~~g~~~~V~~~--~g~--~~~ad~VV~aa~~~~~~~~ll~ 302 (531)
.+.+.|.+.+.+. |++++.+ +|+++..++ +.+.+|++. +|+ ++.||.||.|.|.++.+.+.+.
T Consensus 148 ~l~~~L~~~a~~~~~V~i~~g-tvv~li~~~-~~v~gV~~~~~dG~~~~~~AdLVVgADG~~S~vR~~l~ 215 (514)
T PLN02985 148 RFVQRLRQKASSLPNVRLEEG-TVKSLIEEK-GVIKGVTYKNSAGEETTALAPLTVVCDGCYSNLRRSLN 215 (514)
T ss_pred HHHHHHHHHHHhCCCeEEEee-eEEEEEEcC-CEEEEEEEEcCCCCEEEEECCEEEECCCCchHHHHHhc
Confidence 6778888877766 6888865 677777666 666677763 565 3568999999999987776654
No 223
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=98.65 E-value=3.7e-07 Score=67.69 Aligned_cols=34 Identities=38% Similarity=0.612 Sum_probs=31.7
Q ss_pred cEEEECCChhHHHHHHHHHHcCCcEEEEccCCCC
Q 048009 19 DALVIGGGHNGLTAAAYLARAGLSVAVLERRHVI 52 (531)
Q Consensus 19 dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~ 52 (531)
+|+|||||..|+-.|..|++.|.+|+|+|+++.+
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~ 34 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRL 34 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSS
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchh
Confidence 5899999999999999999999999999998753
No 224
>PRK11445 putative oxidoreductase; Provisional
Probab=98.65 E-value=3.8e-07 Score=89.03 Aligned_cols=62 Identities=11% Similarity=0.121 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEe-CCCc--EEEcCeEEecCChHhHHhhcCC
Q 048009 238 SVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQL-ADGA--QVHSSIVLSNATPYKTFMDLVP 302 (531)
Q Consensus 238 ~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~-~~g~--~~~ad~VV~aa~~~~~~~~ll~ 302 (531)
.+-+.|.+ ..+.|++++.++.|++|..++ +.+. |++ .+|+ ++.||.||.|.|..+.+.+.+.
T Consensus 100 ~~~~~L~~-~~~~gv~v~~~~~v~~i~~~~-~~~~-v~~~~~g~~~~i~a~~vV~AdG~~S~vr~~l~ 164 (351)
T PRK11445 100 KFDLWLKS-LIPASVEVYHNSLCRKIWRED-DGYH-VIFRADGWEQHITARYLVGADGANSMVRRHLY 164 (351)
T ss_pred HHHHHHHH-HHhcCCEEEcCCEEEEEEEcC-CEEE-EEEecCCcEEEEEeCEEEECCCCCcHHhHHhc
Confidence 34444555 346789999999999998776 4443 554 5664 6899999999998876665543
No 225
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=98.65 E-value=2.9e-08 Score=100.02 Aligned_cols=48 Identities=25% Similarity=0.453 Sum_probs=41.0
Q ss_pred CCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCCCCceeecccccCCeee
Q 048009 17 KWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAVTEELIPGFKF 67 (531)
Q Consensus 17 ~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~GG~~~s~~~~~g~~~ 67 (531)
+||++|||+|.+|..||.. +.|.+|+|+|+ ..+||.|-..+|.|...+
T Consensus 2 ~yD~vvIG~G~~g~~aa~~--~~g~~V~lie~-~~~GGtC~n~GCiPsK~l 49 (452)
T TIGR03452 2 HYDLIIIGTGSGNSIPDPR--FADKRIAIVEK-GTFGGTCLNVGCIPTKMF 49 (452)
T ss_pred CcCEEEECCCHHHHHHHHH--HCCCeEEEEeC-CCCCCeeeccCccchHHH
Confidence 5999999999999998654 46999999998 579999999888876443
No 226
>PRK06996 hypothetical protein; Provisional
Probab=98.65 E-value=2.3e-07 Score=92.34 Aligned_cols=55 Identities=16% Similarity=0.204 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCCC---cEEEcCeEEecCCh
Q 048009 237 GSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADG---AQVHSSIVLSNATP 293 (531)
Q Consensus 237 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g---~~~~ad~VV~aa~~ 293 (531)
..+-+.|.+.+++.|++++++++|++++.++ +.+. |++.+| +++.||.||-|-|.
T Consensus 115 ~~l~~~L~~~~~~~g~~~~~~~~v~~~~~~~-~~v~-v~~~~~~g~~~i~a~lvIgADG~ 172 (398)
T PRK06996 115 GSLVAALARAVRGTPVRWLTSTTAHAPAQDA-DGVT-LALGTPQGARTLRARIAVQAEGG 172 (398)
T ss_pred HHHHHHHHHHHHhCCCEEEcCCeeeeeeecC-CeEE-EEECCCCcceEEeeeEEEECCCC
Confidence 4688889999999999999999999998766 4443 667654 57999999997674
No 227
>PRK09077 L-aspartate oxidase; Provisional
Probab=98.64 E-value=2.9e-07 Score=94.78 Aligned_cols=59 Identities=17% Similarity=0.250 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHc-CcEEEcCcceeEEEecC-----CCceeEEEeC---CCc--EEEcCeEEecCChHh
Q 048009 237 GSVSMAIGSAAREA-GAHIVTRAEVSQLMIND-----SGRVNGVQLA---DGA--QVHSSIVLSNATPYK 295 (531)
Q Consensus 237 ~~l~~~l~~~~~~~-G~~i~~~~~V~~I~~~~-----~g~~~~V~~~---~g~--~~~ad~VV~aa~~~~ 295 (531)
..+...|.+.+.+. |++|+.++.|+++..++ ++++.||... +|+ .+.++.||+|+|...
T Consensus 138 ~~i~~~L~~~~~~~~~I~v~~~~~v~~Li~~~~~~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VVlATGG~~ 207 (536)
T PRK09077 138 KAVQTTLVERARNHPNITVLERHNAIDLITSDKLGLPGRRVVGAYVLNRNKERVETIRAKFVVLATGGAS 207 (536)
T ss_pred HHHHHHHHHHHHhCCCcEEEeeEEeeeeeecccccCCCCEEEEEEEEECCCCcEEEEecCeEEECCCCCC
Confidence 36777788777765 89999999999988643 2788888763 454 578999999999876
No 228
>PRK10262 thioredoxin reductase; Provisional
Probab=98.61 E-value=4.9e-07 Score=87.20 Aligned_cols=42 Identities=36% Similarity=0.512 Sum_probs=37.2
Q ss_pred CCCCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCCCCceee
Q 048009 15 EKKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAV 57 (531)
Q Consensus 15 ~~~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~GG~~~ 57 (531)
+..+||+|||||++||+||..|+++|++|+|+|+. ..||.+.
T Consensus 4 ~~~~~vvIIGgGpaGl~aA~~l~~~g~~~~~ie~~-~~gg~~~ 45 (321)
T PRK10262 4 TKHSKLLILGSGPAGYTAAVYAARANLQPVLITGM-EKGGQLT 45 (321)
T ss_pred CCcCCEEEECCCHHHHHHHHHHHHCCCCeEEEEee-cCCCcee
Confidence 45799999999999999999999999999999964 6777654
No 229
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=98.59 E-value=9.9e-07 Score=89.21 Aligned_cols=38 Identities=32% Similarity=0.356 Sum_probs=36.0
Q ss_pred CcEEEECCChhHHHHHHHHHHcCCcEEEEccCCCCCce
Q 048009 18 WDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGA 55 (531)
Q Consensus 18 ~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~GG~ 55 (531)
+||+|||+|++|+++|+.|+++|++|+|+|+....||.
T Consensus 1 ~dv~ivg~Gp~G~~~a~~l~~~g~~v~~~e~~~~~~~~ 38 (544)
T TIGR02462 1 YDVFIAGSGPIGCTYARLCVDAGLKVAMVEIGAADSFL 38 (544)
T ss_pred CcEEEECCchHHHHHHHHHHHCCCeEEEEeccCccCCC
Confidence 69999999999999999999999999999999998863
No 230
>KOG2852 consensus Possible oxidoreductase [General function prediction only]
Probab=98.59 E-value=1.4e-07 Score=83.68 Aligned_cols=63 Identities=24% Similarity=0.255 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHHcC-cEEEcCcceeEEEecCCCceeEEEeC---C-CcEEEcCeEEecCChHhHHhhcCCC
Q 048009 237 GSVSMAIGSAAREAG-AHIVTRAEVSQLMINDSGRVNGVQLA---D-GAQVHSSIVLSNATPYKTFMDLVPG 303 (531)
Q Consensus 237 ~~l~~~l~~~~~~~G-~~i~~~~~V~~I~~~~~g~~~~V~~~---~-g~~~~ad~VV~aa~~~~~~~~ll~~ 303 (531)
+.+...+.+.+++.| +++.++ +|.+|..+. +++.+|-.+ + +.....+++|+++|||. .+|++.
T Consensus 147 ~lFc~~i~sea~k~~~V~lv~G-kv~ev~dEk-~r~n~v~~ae~~~ti~~~d~~~ivvsaGPWT--skllp~ 214 (380)
T KOG2852|consen 147 YLFCHFILSEAEKRGGVKLVFG-KVKEVSDEK-HRINSVPKAEAEDTIIKADVHKIVVSAGPWT--SKLLPF 214 (380)
T ss_pred HHHHHHHHHHHHhhcCeEEEEe-eeEEeeccc-ccccccchhhhcCceEEeeeeEEEEecCCCc--hhhccc
Confidence 467888888888877 899888 888997554 676666555 2 33556778999999999 677754
No 231
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=98.51 E-value=4.5e-07 Score=87.39 Aligned_cols=56 Identities=18% Similarity=0.161 Sum_probs=48.4
Q ss_pred CchHHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCCCc-EEEcCeEEecCChHh
Q 048009 234 GGMGSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADGA-QVHSSIVLSNATPYK 295 (531)
Q Consensus 234 gG~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~-~~~ad~VV~aa~~~~ 295 (531)
....++.+...+.++++|++|++++.|++|..++ |++++|+ ++.++.||+|+|...
T Consensus 206 ~~~~~l~~~a~~~L~~~GV~v~l~~~Vt~v~~~~------v~~~~g~~~I~~~tvvWaaGv~a 262 (405)
T COG1252 206 MFPPKLSKYAERALEKLGVEVLLGTPVTEVTPDG------VTLKDGEEEIPADTVVWAAGVRA 262 (405)
T ss_pred CCCHHHHHHHHHHHHHCCCEEEcCCceEEECCCc------EEEccCCeeEecCEEEEcCCCcC
Confidence 3346888899999999999999999999998764 8888887 499999999999765
No 232
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=98.50 E-value=2.4e-06 Score=77.62 Aligned_cols=57 Identities=12% Similarity=0.188 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCCCc--EEEcCeEEecCChHh
Q 048009 238 SVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADGA--QVHSSIVLSNATPYK 295 (531)
Q Consensus 238 ~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~--~~~ad~VV~aa~~~~ 295 (531)
.+-++|...+++.|+.+..+-+|.+....+ ++++.|.+.|.. .+.+|.+|+|+|...
T Consensus 259 Rl~~~L~~~f~~~Gg~~m~Gd~V~~a~~~~-~~v~~i~trn~~diP~~a~~~VLAsGsff 317 (421)
T COG3075 259 RLHNQLQRQFEQLGGLWMPGDEVKKATCKG-GRVTEIYTRNHADIPLRADFYVLASGSFF 317 (421)
T ss_pred hHHHHHHHHHHHcCceEecCCceeeeeeeC-CeEEEEEecccccCCCChhHeeeeccccc
Confidence 678899999999999999999999999998 999999998865 467999999888766
No 233
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=98.49 E-value=1.2e-06 Score=95.67 Aligned_cols=36 Identities=47% Similarity=0.643 Sum_probs=33.9
Q ss_pred CCCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCC
Q 048009 16 KKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHV 51 (531)
Q Consensus 16 ~~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~ 51 (531)
.++||+|||||.+||+||+.+++.|.+|+|+||...
T Consensus 12 ~~~DVlVVG~G~AGl~AAl~Aa~~G~~V~lleK~~~ 47 (897)
T PRK13800 12 LDCDVLVIGGGTAGTMAALTAAEHGANVLLLEKAHV 47 (897)
T ss_pred eecCEEEECcCHHHHHHHHHHHHCCCeEEEEecccc
Confidence 468999999999999999999999999999999875
No 234
>TIGR01810 betA choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.
Probab=98.49 E-value=1.2e-06 Score=90.47 Aligned_cols=60 Identities=22% Similarity=0.267 Sum_probs=44.4
Q ss_pred HHHHHHHHH-HcCcEEEcCcceeEEEecCCCceeEEEeCCC-c---EEEcCeEEecCChHhHHhhcC
Q 048009 240 SMAIGSAAR-EAGAHIVTRAEVSQLMINDSGRVNGVQLADG-A---QVHSSIVLSNATPYKTFMDLV 301 (531)
Q Consensus 240 ~~~l~~~~~-~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g-~---~~~ad~VV~aa~~~~~~~~ll 301 (531)
...+...+. +.|.+|++++.|++|..++ +++++|++.++ . .+.++.||+|+|...+ .+||
T Consensus 196 ~~~~l~~a~~r~nl~i~~~~~V~rI~~~~-~ra~GV~~~~~~~~~~~~~ak~VIlaAGai~S-P~LL 260 (532)
T TIGR01810 196 ARAYLHPAMKRPNLEVQTRAFVTKINFEG-NRATGVEFKKGGRKEHTEANKEVILSAGAINS-PQLL 260 (532)
T ss_pred HHHHhhhhccCCCeEEEeCCEEEEEEecC-CeEEEEEEEeCCcEEEEEEeeeEEEccCCCCC-HHHH
Confidence 333334343 5579999999999999987 89999988543 2 3578999999998664 4554
No 235
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=98.48 E-value=2e-06 Score=90.00 Aligned_cols=65 Identities=15% Similarity=0.133 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHcCc--EEEcCcceeEEEecCCC-ceeEEEeC------CC--cEEEcCeEEecCChHhHHhhcCC
Q 048009 238 SVSMAIGSAAREAGA--HIVTRAEVSQLMINDSG-RVNGVQLA------DG--AQVHSSIVLSNATPYKTFMDLVP 302 (531)
Q Consensus 238 ~l~~~l~~~~~~~G~--~i~~~~~V~~I~~~~~g-~~~~V~~~------~g--~~~~ad~VV~aa~~~~~~~~ll~ 302 (531)
.+-+.|.+.+.+.|+ +++++++|++++.++++ ..+.|++. +| ++++||+||-|=|.++...+.+.
T Consensus 142 ~le~~L~~~l~~~g~~v~v~~g~~v~~~~~~~~~~~~V~v~l~~~~~~~~g~~~tv~A~~lVGaDGa~S~VR~~lg 217 (634)
T PRK08294 142 RVHDYFLDVMRNSPTRLEPDYGREFVDLEVDEEGEYPVTVTLRRTDGEHEGEEETVRAKYVVGCDGARSRVRKAIG 217 (634)
T ss_pred HHHHHHHHHHHhcCCceEEEeCcEEEEEEECCCCCCCEEEEEEECCCCCCCceEEEEeCEEEECCCCchHHHHhcC
Confidence 466777777877774 77889999999876422 21235554 35 47999999999999988777764
No 236
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=98.46 E-value=2.8e-07 Score=88.87 Aligned_cols=58 Identities=24% Similarity=0.549 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCC---Cc--EEEcCeEEecCChHh
Q 048009 238 SVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLAD---GA--QVHSSIVLSNATPYK 295 (531)
Q Consensus 238 ~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~---g~--~~~ad~VV~aa~~~~ 295 (531)
.+.-.++--+..+|+.+.-..+|.++..++++++.|+++.| |+ .+.|..||.|+||..
T Consensus 225 Rmnl~vAlTA~r~GA~v~Nh~ev~~Llkd~~~kv~Ga~~rD~iTG~e~~I~Ak~VVNATGpfs 287 (680)
T KOG0042|consen 225 RMNLAVALTAARNGATVLNHVEVVSLLKDKDGKVIGARARDHITGKEYEIRAKVVVNATGPFS 287 (680)
T ss_pred HHHHHHHHHHHhcchhhhhHHHHHHHhhCCCCceeeeEEEEeecCcEEEEEEEEEEeCCCCcc
Confidence 45666666677899999888999999988768888888765 55 578899999999987
No 237
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=98.42 E-value=1.7e-07 Score=89.25 Aligned_cols=44 Identities=41% Similarity=0.561 Sum_probs=40.8
Q ss_pred CCCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCCCCceeecc
Q 048009 16 KKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAVTE 59 (531)
Q Consensus 16 ~~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~GG~~~s~ 59 (531)
-.-+++|||||++|++||..|++.|++|.|+||++.+||+....
T Consensus 123 v~~svLVIGGGvAGitAAl~La~~G~~v~LVEKepsiGGrmak~ 166 (622)
T COG1148 123 VSKSVLVIGGGVAGITAALELADMGFKVYLVEKEPSIGGRMAKL 166 (622)
T ss_pred hccceEEEcCcHHHHHHHHHHHHcCCeEEEEecCCcccccHHhh
Confidence 35789999999999999999999999999999999999997654
No 238
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=98.42 E-value=1.3e-06 Score=87.68 Aligned_cols=58 Identities=17% Similarity=0.399 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChHh
Q 048009 237 GSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYK 295 (531)
Q Consensus 237 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~~ 295 (531)
..+.+.|.+.++++|++++.+ .|++|..+++|.+.+|++++|++++||.||=|+|...
T Consensus 154 ~~fd~~L~~~A~~~Gv~~~~g-~V~~v~~~~~g~i~~v~~~~g~~i~ad~~IDASG~~s 211 (454)
T PF04820_consen 154 AKFDQFLRRHAEERGVEVIEG-TVVDVELDEDGRITAVRLDDGRTIEADFFIDASGRRS 211 (454)
T ss_dssp HHHHHHHHHHHHHTT-EEEET--EEEEEE-TTSEEEEEEETTSEEEEESEEEE-SGGG-
T ss_pred HHHHHHHHHHHhcCCCEEEeC-EEEEEEEcCCCCEEEEEECCCCEEEEeEEEECCCccc
Confidence 367888889999999999887 5888887765888899999999999999999888766
No 239
>PLN02852 ferredoxin-NADP+ reductase
Probab=98.42 E-value=3.6e-07 Score=91.41 Aligned_cols=44 Identities=25% Similarity=0.355 Sum_probs=39.9
Q ss_pred CCCCcEEEECCChhHHHHHHHHHH--cCCcEEEEccCCCCCceeec
Q 048009 15 EKKWDALVIGGGHNGLTAAAYLAR--AGLSVAVLERRHVIGGAAVT 58 (531)
Q Consensus 15 ~~~~dvvIIGaGiaGL~aA~~L~~--~G~~V~v~E~~~~~GG~~~s 58 (531)
....+|+|||||+|||+||..|++ .|++|+|||+.+.+||.++.
T Consensus 24 ~~~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~pgGlvr~ 69 (491)
T PLN02852 24 SEPLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTPFGLVRS 69 (491)
T ss_pred CCCCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCCcceEee
Confidence 345799999999999999999997 69999999999999998764
No 240
>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=98.41 E-value=3.5e-06 Score=85.89 Aligned_cols=44 Identities=43% Similarity=0.603 Sum_probs=39.7
Q ss_pred CCCCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCCCCceeec
Q 048009 15 EKKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAVT 58 (531)
Q Consensus 15 ~~~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~GG~~~s 58 (531)
..++||+|||||.|||.||..+++.|.+|+|+||....+|.+..
T Consensus 4 ~~~~DvvVIG~G~AGl~AAi~aa~~g~~V~l~~K~~~~rg~t~~ 47 (562)
T COG1053 4 IHEFDVVVIGGGGAGLRAAIEAAEAGLKVALLSKAPPKRGHTVA 47 (562)
T ss_pred cccCCEEEECCcHHHHHHHHHHHhcCCcEEEEEccccCCCchhh
Confidence 45799999999999999999999999999999999988866543
No 241
>KOG1439 consensus RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]
Probab=98.41 E-value=2.5e-05 Score=73.12 Aligned_cols=62 Identities=15% Similarity=0.264 Sum_probs=50.8
Q ss_pred ccccccCchHHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEec
Q 048009 228 IWSYVEGGMGSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSN 290 (531)
Q Consensus 228 ~~~~~~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~a 290 (531)
.+.||..|..+|++.+++...-.|++..+|.++.+|....+|++.+|+..++ +..+..||+.
T Consensus 223 ~ylyP~yGlgEL~QgFaRlsAvyGgTYMLn~pi~ei~~~~~gk~igvk~~~~-v~~~k~vi~d 284 (440)
T KOG1439|consen 223 PYLYPLYGLGELPQGFARLSAVYGGTYMLNKPIDEINETKNGKVIGVKSGGE-VAKCKKVICD 284 (440)
T ss_pred cceecccCcchhhHHHHHHhhccCceeecCCceeeeeccCCccEEEEecCCc-eeecceEEec
Confidence 3669999999999999998888999999999999999944388776665444 4677777773
No 242
>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain. In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.
Probab=98.39 E-value=2.5e-06 Score=84.53 Aligned_cols=60 Identities=15% Similarity=0.087 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChHhHHhhcC
Q 048009 237 GSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYKTFMDLV 301 (531)
Q Consensus 237 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~~~~~~ll 301 (531)
..++.+|.+.+++ |++|+++++|++|+.++ ++ +.|++.+|+.+.||+||+|+|+|. ..+.
T Consensus 135 ~~~~~~l~~~~~~-G~~i~~~~~V~~i~~~~-~~-~~v~t~~g~~~~a~~vV~a~G~~~--~~l~ 194 (381)
T TIGR03197 135 PQLCRALLAHAGI-RLTLHFNTEITSLERDG-EG-WQLLDANGEVIAASVVVLANGAQA--GQLA 194 (381)
T ss_pred HHHHHHHHhccCC-CcEEEeCCEEEEEEEcC-Ce-EEEEeCCCCEEEcCEEEEcCCccc--cccc
Confidence 5789999998888 99999999999999876 55 458888888789999999999997 4554
No 243
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=98.38 E-value=4.1e-07 Score=97.80 Aligned_cols=43 Identities=40% Similarity=0.630 Sum_probs=40.3
Q ss_pred CCCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCCCCceeec
Q 048009 16 KKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAVT 58 (531)
Q Consensus 16 ~~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~GG~~~s 58 (531)
..+||+|||||+|||+||+.|+++|++|+|||+.+.+||.+..
T Consensus 536 ~~kkVaIIGGGPAGLSAA~~LAr~G~~VTV~Ek~~~lGG~l~~ 578 (1012)
T TIGR03315 536 SAHKVAVIGAGPAGLSAGYFLARAGHPVTVFEKKEKPGGVVKN 578 (1012)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEecccccCceeee
Confidence 4589999999999999999999999999999999999999854
No 244
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=98.37 E-value=2.7e-06 Score=77.34 Aligned_cols=43 Identities=42% Similarity=0.587 Sum_probs=37.4
Q ss_pred CCCCcEEEECCChhHHHHHHHHHHcCCcEEEEccCC--CCCceee
Q 048009 15 EKKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRH--VIGGAAV 57 (531)
Q Consensus 15 ~~~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~--~~GG~~~ 57 (531)
+..+||+|||+|++||.||.+|+.+|.+|+|+|... .+||.+.
T Consensus 3 ~~~~dvivvgaglaglvaa~elA~aG~~V~ildQEgeqnlGGQAf 47 (552)
T COG3573 3 GLTADVIVVGAGLAGLVAAAELADAGKRVLILDQEGEQNLGGQAF 47 (552)
T ss_pred cccccEEEECccHHHHHHHHHHHhcCceEEEEcccccccccceee
Confidence 347999999999999999999999999999998864 4677654
No 245
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.37 E-value=4e-07 Score=89.64 Aligned_cols=44 Identities=43% Similarity=0.507 Sum_probs=41.0
Q ss_pred CCCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCCCCceeecc
Q 048009 16 KKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAVTE 59 (531)
Q Consensus 16 ~~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~GG~~~s~ 59 (531)
...+|+|||||.+||++|..|.+.|++|+||||.+.+||.....
T Consensus 5 ~~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~iGGlW~y~ 48 (448)
T KOG1399|consen 5 MSKDVAVIGAGPAGLAAARELLREGHEVVVFERTDDIGGLWKYT 48 (448)
T ss_pred CCCceEEECcchHHHHHHHHHHHCCCCceEEEecCCccceEeec
Confidence 35899999999999999999999999999999999999997654
No 246
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=98.36 E-value=4.5e-07 Score=98.35 Aligned_cols=43 Identities=37% Similarity=0.468 Sum_probs=40.3
Q ss_pred CCCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCCCCceeec
Q 048009 16 KKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAVT 58 (531)
Q Consensus 16 ~~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~GG~~~s 58 (531)
...+|+|||||+|||+||+.|+++||+|+|||+.+.+||.+..
T Consensus 305 ~gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~~~GG~l~y 347 (944)
T PRK12779 305 VKPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFHDLGGVLRY 347 (944)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCCCCceEEc
Confidence 4689999999999999999999999999999999999999753
No 247
>PRK12831 putative oxidoreductase; Provisional
Probab=98.35 E-value=5.8e-07 Score=90.73 Aligned_cols=43 Identities=42% Similarity=0.581 Sum_probs=40.2
Q ss_pred CCCCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCCCCceee
Q 048009 15 EKKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAV 57 (531)
Q Consensus 15 ~~~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~GG~~~ 57 (531)
....||+|||||++||+||+.|+++|++|+|+|+.+.+||.+.
T Consensus 138 ~~~~~V~IIG~GpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~ 180 (464)
T PRK12831 138 KKGKKVAVIGSGPAGLTCAGDLAKMGYDVTIFEALHEPGGVLV 180 (464)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCCeee
Confidence 4568999999999999999999999999999999999999875
No 248
>KOG2665 consensus Predicted FAD-dependent oxidoreductase [Function unknown]
Probab=98.30 E-value=3.5e-06 Score=75.97 Aligned_cols=55 Identities=29% Similarity=0.502 Sum_probs=43.4
Q ss_pred cccccccccccCCCCcEEEECCChhHHHHHHHHHHc--CCcEEEEccCCCCCceeec
Q 048009 4 RSFTSTTSALKEKKWDALVIGGGHNGLTAAAYLARA--GLSVAVLERRHVIGGAAVT 58 (531)
Q Consensus 4 ~~~~~~~~~~~~~~~dvvIIGaGiaGL~aA~~L~~~--G~~V~v~E~~~~~GG~~~s 58 (531)
|..++.+.+.....+|.||||||+.||+.|.+|.-+ +.+|.|+|+...++=..++
T Consensus 35 R~i~gg~~s~s~~~~D~VvvGgGiVGlAsARel~lrhp~l~V~vleke~~la~hqSg 91 (453)
T KOG2665|consen 35 RGISGGAESISKERYDLVVVGGGIVGLASARELSLRHPSLKVAVLEKEKSLAVHQSG 91 (453)
T ss_pred ccccCCccccccccccEEEECCceeehhhhHHHhhcCCCceEEeeehhhhhceeecc
Confidence 334444444555689999999999999999999877 8999999999887655444
No 249
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=98.29 E-value=7.4e-07 Score=88.38 Aligned_cols=39 Identities=36% Similarity=0.503 Sum_probs=34.7
Q ss_pred CcEEEECCChhHHHHHHHHHHcCCcEEEEccCCCCCcee
Q 048009 18 WDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAA 56 (531)
Q Consensus 18 ~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~GG~~ 56 (531)
+||+|||||++|++||+.|+++|++|+|+|++...+..|
T Consensus 1 ~~VvIVGaGPAG~~aA~~la~~G~~V~llE~~~~~~~~c 39 (398)
T TIGR02028 1 LRVAVVGGGPAGASAAETLASAGIQTFLLERKPDNAKPC 39 (398)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCcEEEEecCCCCCCCc
Confidence 699999999999999999999999999999987654333
No 250
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=98.28 E-value=1.5e-06 Score=84.68 Aligned_cols=45 Identities=36% Similarity=0.496 Sum_probs=36.5
Q ss_pred CCCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCCCCceeeccc
Q 048009 16 KKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAVTEE 60 (531)
Q Consensus 16 ~~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~GG~~~s~~ 60 (531)
..|||+|||||.||+-||+..++.|.+++|+=-+..-=|.+..+.
T Consensus 3 ~~~DVIVIGgGHAG~EAA~AaARmG~ktlLlT~~~dtig~msCNP 47 (621)
T COG0445 3 KEYDVIVIGGGHAGVEAALAAARMGAKTLLLTLNLDTIGEMSCNP 47 (621)
T ss_pred CCCceEEECCCccchHHHHhhhccCCeEEEEEcCCCceeeccccc
Confidence 359999999999999999999999999988877654444554443
No 251
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=98.26 E-value=1.3e-06 Score=88.08 Aligned_cols=44 Identities=41% Similarity=0.547 Sum_probs=40.4
Q ss_pred cCCCCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCCCCceee
Q 048009 14 KEKKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAV 57 (531)
Q Consensus 14 ~~~~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~GG~~~ 57 (531)
+...+||+|||||++||+||..|+++|++|+|+|+.+.+||.+.
T Consensus 130 ~~~~~~V~IIG~G~aGl~aA~~l~~~G~~V~vie~~~~~GG~l~ 173 (449)
T TIGR01316 130 PSTHKKVAVIGAGPAGLACASELAKAGHSVTVFEALHKPGGVVT 173 (449)
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCcEee
Confidence 34568999999999999999999999999999999999999764
No 252
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=98.25 E-value=1.2e-06 Score=93.96 Aligned_cols=43 Identities=44% Similarity=0.648 Sum_probs=40.3
Q ss_pred CCCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCCCCceeec
Q 048009 16 KKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAVT 58 (531)
Q Consensus 16 ~~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~GG~~~s 58 (531)
...+|+|||||+|||+||+.|+++|++|+|+|+.+.+||.+..
T Consensus 538 tgKkVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek~~~~GG~lr~ 580 (1019)
T PRK09853 538 SRKKVAVIGAGPAGLAAAYFLARAGHPVTVFEREENAGGVVKN 580 (1019)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCeEEEEecccccCcceee
Confidence 4579999999999999999999999999999999999999764
No 253
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=98.24 E-value=6.4e-06 Score=83.42 Aligned_cols=35 Identities=31% Similarity=0.590 Sum_probs=31.3
Q ss_pred CcEEEECCChhHHHHHHHHHHcC--CcEEEEccCCCC
Q 048009 18 WDALVIGGGHNGLTAAAYLARAG--LSVAVLERRHVI 52 (531)
Q Consensus 18 ~dvvIIGaGiaGL~aA~~L~~~G--~~V~v~E~~~~~ 52 (531)
++|+|||||++||+||..|++.+ .+|+|+|+++..
T Consensus 1 ~~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~~~~~~ 37 (444)
T PRK09564 1 MKIIIIGGTAAGMSAAAKAKRLNKELEITVYEKTDIV 37 (444)
T ss_pred CeEEEECCcHHHHHHHHHHHHHCCCCcEEEEECCCcc
Confidence 37999999999999999999975 589999998764
No 254
>COG4716 Myosin-crossreactive antigen [Function unknown]
Probab=98.24 E-value=1.3e-06 Score=80.63 Aligned_cols=58 Identities=28% Similarity=0.430 Sum_probs=47.2
Q ss_pred CCCcEEEECCChhHHHHHHHHHHc----CCcEEEEccCCCCCceeeccc-ccCCeeecccchh
Q 048009 16 KKWDALVIGGGHNGLTAAAYLARA----GLSVAVLERRHVIGGAAVTEE-LIPGFKFSRCSYL 73 (531)
Q Consensus 16 ~~~dvvIIGaGiaGL~aA~~L~~~----G~~V~v~E~~~~~GG~~~s~~-~~~g~~~d~g~~~ 73 (531)
....+-|||+|+|||++|..|-+. |.++.|+|.-+..||..-..+ ...||....|...
T Consensus 21 dqKsaY~vG~GlAsLA~AvfLIRDg~m~G~~IHilEelpl~GGSlDG~~~p~~GfV~RGGRem 83 (587)
T COG4716 21 DQKSAYIVGGGLASLAAAVFLIRDGQMDGKRIHILEELPLAGGSLDGAGSPHHGFVVRGGREM 83 (587)
T ss_pred ccceeEEEccchHhhhheeEEEeccccCCceeEeeecCcccCCCCCCCCCcccceeecCcHHH
Confidence 357799999999999999999885 688999999999999876544 4567777666543
No 255
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=98.23 E-value=5.6e-06 Score=82.31 Aligned_cols=44 Identities=14% Similarity=0.197 Sum_probs=36.8
Q ss_pred HHcCcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChHh
Q 048009 248 REAGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYK 295 (531)
Q Consensus 248 ~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~~ 295 (531)
.+.|+++++++.|+.|..++ . .|.+.+|+++.+|++|+|+|...
T Consensus 69 ~~~~i~~~~g~~V~~id~~~-~---~v~~~~g~~~~yd~LViATGs~~ 112 (396)
T PRK09754 69 QENNVHLHSGVTIKTLGRDT-R---ELVLTNGESWHWDQLFIATGAAA 112 (396)
T ss_pred HHCCCEEEcCCEEEEEECCC-C---EEEECCCCEEEcCEEEEccCCCC
Confidence 45789999999999998765 2 36778888899999999999765
No 256
>PTZ00188 adrenodoxin reductase; Provisional
Probab=98.23 E-value=1.9e-06 Score=84.87 Aligned_cols=43 Identities=21% Similarity=0.245 Sum_probs=38.6
Q ss_pred CCCcEEEECCChhHHHHHHHHH-HcCCcEEEEccCCCCCceeec
Q 048009 16 KKWDALVIGGGHNGLTAAAYLA-RAGLSVAVLERRHVIGGAAVT 58 (531)
Q Consensus 16 ~~~dvvIIGaGiaGL~aA~~L~-~~G~~V~v~E~~~~~GG~~~s 58 (531)
...+|+|||||+|||.||.+|+ +.|++|+|||+.+.+||.++.
T Consensus 38 ~~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~pgGLvR~ 81 (506)
T PTZ00188 38 KPFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNPYGLIRY 81 (506)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCCCccEEEE
Confidence 4578999999999999999765 679999999999999999874
No 257
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=98.21 E-value=1.4e-05 Score=79.39 Aligned_cols=50 Identities=14% Similarity=0.279 Sum_probs=39.7
Q ss_pred HHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChHh
Q 048009 243 IGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYK 295 (531)
Q Consensus 243 l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~~ 295 (531)
+.+.++++|++++++++|++|.. + +.+ .|++.+|+++.+|.||+++|...
T Consensus 192 l~~~l~~~GV~i~~~~~V~~i~~-~-~~~-~v~l~~g~~i~aD~Vv~a~G~~p 241 (396)
T PRK09754 192 LLQRHQQAGVRILLNNAIEHVVD-G-EKV-ELTLQSGETLQADVVIYGIGISA 241 (396)
T ss_pred HHHHHHHCCCEEEeCCeeEEEEc-C-CEE-EEEECCCCEEECCEEEECCCCCh
Confidence 34456678999999999999976 3 333 47888999999999999988654
No 258
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=98.18 E-value=2e-06 Score=94.38 Aligned_cols=43 Identities=40% Similarity=0.537 Sum_probs=39.9
Q ss_pred CCCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCCCCceeec
Q 048009 16 KKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAVT 58 (531)
Q Consensus 16 ~~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~GG~~~s 58 (531)
...+|+|||||++||+||+.|+++|++|+|||+.+.+||.++.
T Consensus 429 ~~~kVaIIG~GPAGLsaA~~La~~G~~VtV~E~~~~~GG~l~~ 471 (1006)
T PRK12775 429 KLGKVAICGSGPAGLAAAADLVKYGVDVTVYEALHVVGGVLQY 471 (1006)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCcceeec
Confidence 4579999999999999999999999999999999999998653
No 259
>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]
Probab=98.17 E-value=2.1e-06 Score=80.97 Aligned_cols=39 Identities=38% Similarity=0.581 Sum_probs=34.9
Q ss_pred CCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCCCCce
Q 048009 17 KWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGA 55 (531)
Q Consensus 17 ~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~GG~ 55 (531)
+.+||||||||+||++|..|.++|++|+|+|++..+-|.
T Consensus 2 ~~~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~~e~~R~~ 40 (420)
T KOG2614|consen 2 EPKVVIVGGGIVGLATALALHRKGIDVVVLESREDPRGE 40 (420)
T ss_pred CCcEEEECCcHHHHHHHHHHHHcCCeEEEEeeccccccC
Confidence 578999999999999999999999999999998765433
No 260
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=98.17 E-value=2.6e-06 Score=85.38 Aligned_cols=53 Identities=19% Similarity=0.196 Sum_probs=44.5
Q ss_pred hHHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChH
Q 048009 236 MGSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPY 294 (531)
Q Consensus 236 ~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~ 294 (531)
...+.+.+.+.++++|++++++++|++|..+ .|.++||+++.+|.||+++|..
T Consensus 227 ~~~~~~~~~~~L~~~gV~v~~~~~v~~v~~~------~v~~~~g~~i~~d~vi~~~G~~ 279 (424)
T PTZ00318 227 DQALRKYGQRRLRRLGVDIRTKTAVKEVLDK------EVVLKDGEVIPTGLVVWSTGVG 279 (424)
T ss_pred CHHHHHHHHHHHHHCCCEEEeCCeEEEEeCC------EEEECCCCEEEccEEEEccCCC
Confidence 3568888899999999999999999998632 2678899999999999987743
No 261
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=98.16 E-value=2.4e-06 Score=90.32 Aligned_cols=43 Identities=37% Similarity=0.567 Sum_probs=39.9
Q ss_pred CCCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCCCCceeec
Q 048009 16 KKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAVT 58 (531)
Q Consensus 16 ~~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~GG~~~s 58 (531)
...+|+|||||++||+||..|++.|++|+|||+.+.+||....
T Consensus 326 ~~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~~GG~l~~ 368 (654)
T PRK12769 326 SDKRVAIIGAGPAGLACADVLARNGVAVTVYDRHPEIGGLLTF 368 (654)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceeee
Confidence 4579999999999999999999999999999999999998653
No 262
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=98.15 E-value=2.9e-06 Score=86.14 Aligned_cols=43 Identities=44% Similarity=0.579 Sum_probs=39.7
Q ss_pred CCCCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCCCCceee
Q 048009 15 EKKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAV 57 (531)
Q Consensus 15 ~~~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~GG~~~ 57 (531)
...++|+|||||++||+||..|+++|++|+|||+.+.+||...
T Consensus 141 ~~~~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~~~GG~l~ 183 (471)
T PRK12810 141 RTGKKVAVVGSGPAGLAAADQLARAGHKVTVFERADRIGGLLR 183 (471)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCCceee
Confidence 3458999999999999999999999999999999999999864
No 263
>PTZ00367 squalene epoxidase; Provisional
Probab=98.14 E-value=2.4e-06 Score=87.67 Aligned_cols=35 Identities=31% Similarity=0.537 Sum_probs=33.2
Q ss_pred CCCcEEEECCChhHHHHHHHHHHcCCcEEEEccCC
Q 048009 16 KKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRH 50 (531)
Q Consensus 16 ~~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~ 50 (531)
.++||+|||||++|+++|+.|+++|++|+|+|++.
T Consensus 32 ~~~dViIVGaGiaGlalA~aLar~G~~V~VlEr~~ 66 (567)
T PTZ00367 32 YDYDVIIVGGSIAGPVLAKALSKQGRKVLMLERDL 66 (567)
T ss_pred cCccEEEECCCHHHHHHHHHHHhcCCEEEEEcccc
Confidence 46999999999999999999999999999999975
No 264
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=98.13 E-value=2.7e-05 Score=76.90 Aligned_cols=51 Identities=18% Similarity=0.276 Sum_probs=40.9
Q ss_pred HHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChHh
Q 048009 243 IGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYK 295 (531)
Q Consensus 243 l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~~ 295 (531)
+.+.+++.|++++++++|++|..++ +. ..|++.+|+++.+|.||+++|...
T Consensus 189 l~~~l~~~gV~i~~~~~v~~i~~~~-~~-~~v~~~~g~~i~~D~vI~a~G~~p 239 (377)
T PRK04965 189 LQHRLTEMGVHLLLKSQLQGLEKTD-SG-IRATLDSGRSIEVDAVIAAAGLRP 239 (377)
T ss_pred HHHHHHhCCCEEEECCeEEEEEccC-CE-EEEEEcCCcEEECCEEEECcCCCc
Confidence 3445677899999999999998765 44 347888999999999999988544
No 265
>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=98.13 E-value=6.9e-06 Score=78.28 Aligned_cols=41 Identities=41% Similarity=0.639 Sum_probs=33.6
Q ss_pred CCCCcEEEECCChhHHHHHHHHHHcCCcEEEEccC-CCCCce
Q 048009 15 EKKWDALVIGGGHNGLTAAAYLARAGLSVAVLERR-HVIGGA 55 (531)
Q Consensus 15 ~~~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~-~~~GG~ 55 (531)
...|||||||||.||.-||...++-|-+.+++-.+ +++|-.
T Consensus 26 ~~~~dVvVIGgGHAG~EAAaAaaR~Ga~TlLlT~~ld~Ig~m 67 (679)
T KOG2311|consen 26 TSTYDVVVIGGGHAGCEAAAAAARLGARTLLLTHNLDTIGEM 67 (679)
T ss_pred CCcccEEEECCCccchHHHHHHHhcCCceEEeeccccccccc
Confidence 45799999999999999999999999887776665 455543
No 266
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=98.10 E-value=3.8e-06 Score=90.35 Aligned_cols=42 Identities=40% Similarity=0.552 Sum_probs=39.3
Q ss_pred CCCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCCCCceee
Q 048009 16 KKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAV 57 (531)
Q Consensus 16 ~~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~GG~~~ 57 (531)
...||+|||||+|||+||..|+++|++|+|||+.+.+||...
T Consensus 430 ~~~~V~IIGaGpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~ 471 (752)
T PRK12778 430 NGKKVAVIGSGPAGLSFAGDLAKRGYDVTVFEALHEIGGVLK 471 (752)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCeee
Confidence 468999999999999999999999999999999999999864
No 267
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=98.09 E-value=3.8e-06 Score=81.48 Aligned_cols=37 Identities=38% Similarity=0.384 Sum_probs=33.8
Q ss_pred CCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCCCC
Q 048009 17 KWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIG 53 (531)
Q Consensus 17 ~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~G 53 (531)
+.||+|||||++|+.||+.|+++|++|+|+|+.+...
T Consensus 2 ~~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~rp~~~ 38 (436)
T PRK05335 2 MKPVNVIGAGLAGSEAAWQLAKRGVPVELYEMRPVKK 38 (436)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCccC
Confidence 3699999999999999999999999999999987643
No 268
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=98.09 E-value=4.7e-06 Score=84.48 Aligned_cols=43 Identities=42% Similarity=0.562 Sum_probs=39.6
Q ss_pred CCCCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCCCCceee
Q 048009 15 EKKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAV 57 (531)
Q Consensus 15 ~~~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~GG~~~ 57 (531)
....+|+|||||++||+||..|+++|++|+|+|+++.+||...
T Consensus 138 ~~~~~VvIIGgGpaGl~aA~~l~~~g~~V~lie~~~~~gG~l~ 180 (457)
T PRK11749 138 KTGKKVAVIGAGPAGLTAAHRLARKGYDVTIFEARDKAGGLLR 180 (457)
T ss_pred cCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCcEee
Confidence 3468999999999999999999999999999999999998764
No 269
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=98.09 E-value=3.2e-06 Score=87.33 Aligned_cols=59 Identities=14% Similarity=0.264 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHcCc-EEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChHhHHhhcC
Q 048009 238 SVSMAIGSAAREAGA-HIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYKTFMDLV 301 (531)
Q Consensus 238 ~l~~~l~~~~~~~G~-~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~~~~~~ll 301 (531)
.|.+.|.+.+ +. .++++++|++|+.++ +.+. |++.+|+++.+|.||.|-|.++...+.+
T Consensus 195 ~L~~~L~~al---g~~~i~~g~~V~~I~~~~-d~Vt-V~~~dG~ti~aDlVVGADG~~S~vR~~l 254 (668)
T PLN02927 195 TLQQILARAV---GEDVIRNESNVVDFEDSG-DKVT-VVLENGQRYEGDLLVGADGIWSKVRNNL 254 (668)
T ss_pred HHHHHHHhhC---CCCEEEcCCEEEEEEEeC-CEEE-EEECCCCEEEcCEEEECCCCCcHHHHHh
Confidence 5666665433 33 477899999998876 6665 8889998899999999999998665544
No 270
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=98.08 E-value=4.7e-06 Score=87.75 Aligned_cols=43 Identities=42% Similarity=0.603 Sum_probs=40.1
Q ss_pred CCCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCCCCceeec
Q 048009 16 KKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAVT 58 (531)
Q Consensus 16 ~~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~GG~~~s 58 (531)
...+|+|||||++||+||+.|++.|++|+|||+.+.+||....
T Consensus 309 ~~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~GG~l~~ 351 (639)
T PRK12809 309 RSEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEIGGMLTF 351 (639)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCCCCeeec
Confidence 4689999999999999999999999999999999999998753
No 271
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=98.08 E-value=4.8e-06 Score=87.76 Aligned_cols=42 Identities=36% Similarity=0.552 Sum_probs=39.5
Q ss_pred CCCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCCCCceee
Q 048009 16 KKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAV 57 (531)
Q Consensus 16 ~~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~GG~~~ 57 (531)
...+|+|||||++||+||+.|++.|++|+|||+++.+||...
T Consensus 192 ~~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~~~GG~l~ 233 (652)
T PRK12814 192 SGKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQAGGMMR 233 (652)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCceee
Confidence 457999999999999999999999999999999999999875
No 272
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=98.08 E-value=4.1e-06 Score=83.06 Aligned_cols=42 Identities=43% Similarity=0.544 Sum_probs=40.0
Q ss_pred CCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCCCCceeec
Q 048009 17 KWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAVT 58 (531)
Q Consensus 17 ~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~GG~~~s 58 (531)
..+|+|||||++||+||..|++.|++|+|+|+.+.+||++..
T Consensus 123 g~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~~GGll~y 164 (457)
T COG0493 123 GKKVAVIGAGPAGLAAADDLSRAGHDVTVFERVALDGGLLLY 164 (457)
T ss_pred CCEEEEECCCchHhhhHHHHHhCCCeEEEeCCcCCCceeEEe
Confidence 489999999999999999999999999999999999999864
No 273
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=98.07 E-value=2.1e-05 Score=84.78 Aligned_cols=45 Identities=9% Similarity=0.191 Sum_probs=37.2
Q ss_pred HHHcCcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChHh
Q 048009 247 AREAGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYK 295 (531)
Q Consensus 247 ~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~~ 295 (531)
++++|++++++++|++|..+. ..|.+.+|+++.+|++|+|+|...
T Consensus 69 ~~~~gI~~~~g~~V~~Id~~~----~~V~~~~G~~i~yD~LVIATGs~p 113 (847)
T PRK14989 69 YEKHGIKVLVGERAITINRQE----KVIHSSAGRTVFYDKLIMATGSYP 113 (847)
T ss_pred HHhCCCEEEcCCEEEEEeCCC----cEEEECCCcEEECCEEEECCCCCc
Confidence 456799999999999998754 236788888899999999999764
No 274
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=98.06 E-value=4.1e-06 Score=81.99 Aligned_cols=37 Identities=38% Similarity=0.652 Sum_probs=34.3
Q ss_pred cEEEECCChhHHHHHHHHHHc--CCcEEEEccCCCCCce
Q 048009 19 DALVIGGGHNGLTAAAYLARA--GLSVAVLERRHVIGGA 55 (531)
Q Consensus 19 dvvIIGaGiaGL~aA~~L~~~--G~~V~v~E~~~~~GG~ 55 (531)
||+|||||++||++|+.|+++ |++|+|+|+.+.+||.
T Consensus 1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~~~~~ 39 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRTIGGN 39 (370)
T ss_pred CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCCc
Confidence 899999999999999999997 9999999999877763
No 275
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=98.05 E-value=5.8e-06 Score=83.65 Aligned_cols=43 Identities=42% Similarity=0.586 Sum_probs=39.9
Q ss_pred CCCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCCCCceeec
Q 048009 16 KKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAVT 58 (531)
Q Consensus 16 ~~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~GG~~~s 58 (531)
...+|+|||||++||+||..|+++|++|+|+|+.+.+||....
T Consensus 140 ~~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~~gG~l~~ 182 (467)
T TIGR01318 140 TGKRVAVIGAGPAGLACADILARAGVQVVVFDRHPEIGGLLTF 182 (467)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCceeee
Confidence 4589999999999999999999999999999999999998753
No 276
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=98.04 E-value=4.1e-06 Score=87.33 Aligned_cols=44 Identities=36% Similarity=0.533 Sum_probs=40.8
Q ss_pred CCCCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCCCCceeec
Q 048009 15 EKKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAVT 58 (531)
Q Consensus 15 ~~~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~GG~~~s 58 (531)
..-.+|+|||+|++||+||-.|-+.||.|+||||++++||...-
T Consensus 1783 rtg~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr~ggll~y 1826 (2142)
T KOG0399|consen 1783 RTGKRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDRVGGLLMY 1826 (2142)
T ss_pred ccCcEEEEEccCchhhhHHHHHhhcCcEEEEEEecCCcCceeee
Confidence 34589999999999999999999999999999999999999753
No 277
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=98.04 E-value=4.6e-05 Score=82.16 Aligned_cols=54 Identities=9% Similarity=0.196 Sum_probs=43.1
Q ss_pred HHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChHh
Q 048009 242 AIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYK 295 (531)
Q Consensus 242 ~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~~ 295 (531)
.+.+.++++|++|++++.|++|..++++....|.+.||+++.+|.||+++|...
T Consensus 192 ~l~~~L~~~GV~v~~~~~v~~I~~~~~~~~~~v~~~dG~~i~~D~Vv~A~G~rP 245 (847)
T PRK14989 192 QLRRKIESMGVRVHTSKNTLEIVQEGVEARKTMRFADGSELEVDFIVFSTGIRP 245 (847)
T ss_pred HHHHHHHHCCCEEEcCCeEEEEEecCCCceEEEEECCCCEEEcCEEEECCCccc
Confidence 345667889999999999999986532445568889999999999999988543
No 278
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=98.04 E-value=6.3e-06 Score=87.40 Aligned_cols=38 Identities=26% Similarity=0.522 Sum_probs=34.4
Q ss_pred CCCCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCCC
Q 048009 15 EKKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVI 52 (531)
Q Consensus 15 ~~~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~ 52 (531)
....+|+|||||+|||+||++|+++||+|+|+|+.+..
T Consensus 381 ~tgKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~~i~ 418 (1028)
T PRK06567 381 PTNYNILVTGLGPAGFSLSYYLLRSGHNVTAIDGLKIT 418 (1028)
T ss_pred CCCCeEEEECcCHHHHHHHHHHHhCCCeEEEEcccccc
Confidence 45689999999999999999999999999999997543
No 279
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=98.03 E-value=6.6e-06 Score=90.80 Aligned_cols=43 Identities=37% Similarity=0.592 Sum_probs=40.1
Q ss_pred CCCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCCCCceeec
Q 048009 16 KKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAVT 58 (531)
Q Consensus 16 ~~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~GG~~~s 58 (531)
..+||+|||||++||+||..|++.|++|+|+|+++.+||.+..
T Consensus 162 ~~~dVvIIGaGPAGLaAA~~aar~G~~V~liD~~~~~GG~~~~ 204 (985)
T TIGR01372 162 AHCDVLVVGAGPAGLAAALAAARAGARVILVDEQPEAGGSLLS 204 (985)
T ss_pred ccCCEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCCCeeec
Confidence 3589999999999999999999999999999999999998754
No 280
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=98.02 E-value=5.6e-06 Score=80.92 Aligned_cols=37 Identities=41% Similarity=0.383 Sum_probs=34.0
Q ss_pred CcEEEECCChhHHHHHHHHHHcCCcEEEEccCCCCCc
Q 048009 18 WDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGG 54 (531)
Q Consensus 18 ~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~GG 54 (531)
.||+|||||++|+.||+.|+++|++|+|||+++..+-
T Consensus 1 ~~VvVIGgGlAGleaA~~LAr~G~~V~LiE~rp~~~~ 37 (433)
T TIGR00137 1 TPVHVIGGGLAGSEAAWQLAQAGVPVILYEMRPEKLT 37 (433)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCcEEEEeccccccC
Confidence 4899999999999999999999999999999887654
No 281
>TIGR03377 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase, anaerobic, A subunit. Members of this protein family are the A subunit, product of the glpA gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=98.02 E-value=7.3e-05 Score=77.06 Aligned_cols=62 Identities=27% Similarity=0.395 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeC---CCc--EEEcCeEEecCChHhHHhhcC
Q 048009 237 GSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLA---DGA--QVHSSIVLSNATPYKTFMDLV 301 (531)
Q Consensus 237 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~---~g~--~~~ad~VV~aa~~~~~~~~ll 301 (531)
..++.++++.+.++|++|+.+++|++|..++ +++++|++. +|+ ++.|+.||+|+|+|. .++.
T Consensus 128 ~~l~~al~~~A~~~Ga~i~~~t~V~~i~~~~-~~v~gv~v~~~~~g~~~~i~a~~VVnAaG~wa--~~l~ 194 (516)
T TIGR03377 128 FRLVAANVLDAQEHGARIFTYTKVTGLIREG-GRVTGVKVEDHKTGEEERIEAQVVINAAGIWA--GRIA 194 (516)
T ss_pred HHHHHHHHHHHHHcCCEEEcCcEEEEEEEEC-CEEEEEEEEEcCCCcEEEEEcCEEEECCCcch--HHHH
Confidence 4788899999999999999999999999877 777777764 342 689999999999997 4443
No 282
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=98.01 E-value=2.2e-05 Score=84.50 Aligned_cols=45 Identities=16% Similarity=0.185 Sum_probs=37.9
Q ss_pred HHHcCcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChHh
Q 048009 247 AREAGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYK 295 (531)
Q Consensus 247 ~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~~ 295 (531)
++++|++++++++|++|..+. . .|++.+|+++.+|++|+|+|...
T Consensus 64 ~~~~gv~~~~g~~V~~Id~~~-k---~V~~~~g~~~~yD~LVlATGs~p 108 (785)
T TIGR02374 64 YEKHGITLYTGETVIQIDTDQ-K---QVITDAGRTLSYDKLILATGSYP 108 (785)
T ss_pred HHHCCCEEEcCCeEEEEECCC-C---EEEECCCcEeeCCEEEECCCCCc
Confidence 457899999999999998765 2 37788898899999999999654
No 283
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=98.00 E-value=2.4e-05 Score=77.06 Aligned_cols=46 Identities=22% Similarity=0.248 Sum_probs=36.8
Q ss_pred HHHHHcCcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChHh
Q 048009 245 SAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYK 295 (531)
Q Consensus 245 ~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~~ 295 (531)
+.+++.|++++.+ +|++|+.++ . .|.+.+|+++.+|++|+|+|...
T Consensus 62 ~~~~~~gv~~~~~-~v~~id~~~-~---~V~~~~g~~~~yD~LviAtG~~~ 107 (364)
T TIGR03169 62 RLARQAGARFVIA-EATGIDPDR-R---KVLLANRPPLSYDVLSLDVGSTT 107 (364)
T ss_pred HHHHhcCCEEEEE-EEEEEeccc-C---EEEECCCCcccccEEEEccCCCC
Confidence 3455678998875 899998865 3 37788998899999999999765
No 284
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=97.99 E-value=1e-05 Score=79.10 Aligned_cols=51 Identities=31% Similarity=0.444 Sum_probs=42.7
Q ss_pred cccccccccCCCCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCCCCceee
Q 048009 6 FTSTTSALKEKKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAV 57 (531)
Q Consensus 6 ~~~~~~~~~~~~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~GG~~~ 57 (531)
+++.. +.+....+|+|||||.+|+++|..|+++|++|+|+|+.+.+||...
T Consensus 8 ~~~~~-~~~~~~~~VvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~ 58 (352)
T PRK12770 8 FMCKE-KPPPTGKKVAIIGAGPAGLAAAGYLACLGYEVHVYDKLPEPGGLML 58 (352)
T ss_pred hhccc-CCCCCCCEEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCceee
Confidence 44443 3333457999999999999999999999999999999999998764
No 285
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=97.96 E-value=7.4e-05 Score=80.55 Aligned_cols=50 Identities=8% Similarity=0.269 Sum_probs=41.3
Q ss_pred HHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChH
Q 048009 243 IGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPY 294 (531)
Q Consensus 243 l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~ 294 (531)
+.+.++++|++|++++.|++|..+ +++.+|++.||+++.+|.||+++|..
T Consensus 188 l~~~l~~~GV~v~~~~~v~~i~~~--~~~~~v~~~dG~~i~~D~Vi~a~G~~ 237 (785)
T TIGR02374 188 LQRELEQKGLTFLLEKDTVEIVGA--TKADRIRFKDGSSLEADLIVMAAGIR 237 (785)
T ss_pred HHHHHHHcCCEEEeCCceEEEEcC--CceEEEEECCCCEEEcCEEEECCCCC
Confidence 445567889999999999999753 45667889999999999999998854
No 286
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=97.95 E-value=1.2e-05 Score=81.88 Aligned_cols=42 Identities=40% Similarity=0.575 Sum_probs=39.2
Q ss_pred CCCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCCCCceee
Q 048009 16 KKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAV 57 (531)
Q Consensus 16 ~~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~GG~~~ 57 (531)
...+|+|||||++||+||..|+++|++|+|+|+.+.+||.+.
T Consensus 142 ~~~~V~IIGaG~aGl~aA~~L~~~g~~V~v~e~~~~~gG~l~ 183 (485)
T TIGR01317 142 TGKKVAVVGSGPAGLAAADQLNRAGHTVTVFEREDRCGGLLM 183 (485)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCCCceee
Confidence 347999999999999999999999999999999999999875
No 287
>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]
Probab=97.95 E-value=9e-06 Score=75.52 Aligned_cols=35 Identities=34% Similarity=0.520 Sum_probs=33.2
Q ss_pred CCCCcEEEECCChhHHHHHHHHHHcCCcEEEEccC
Q 048009 15 EKKWDALVIGGGHNGLTAAAYLARAGLSVAVLERR 49 (531)
Q Consensus 15 ~~~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~ 49 (531)
+...||+|||||++|.+.|+.|+|.|.+|+|+||.
T Consensus 43 ~~~~DvIIVGAGV~GsaLa~~L~kdGRrVhVIERD 77 (509)
T KOG1298|consen 43 DGAADVIIVGAGVAGSALAYALAKDGRRVHVIERD 77 (509)
T ss_pred CCcccEEEECCcchHHHHHHHHhhCCcEEEEEecc
Confidence 45799999999999999999999999999999996
No 288
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=97.94 E-value=7.2e-05 Score=75.12 Aligned_cols=39 Identities=36% Similarity=0.556 Sum_probs=35.5
Q ss_pred CCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCCCCce
Q 048009 17 KWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGA 55 (531)
Q Consensus 17 ~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~GG~ 55 (531)
..+++|||+|..||.+|..|+++|++|+|+|+.++++|.
T Consensus 136 ~~~v~vvG~G~~gle~A~~~~~~G~~v~l~e~~~~~~~~ 174 (415)
T COG0446 136 PKDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAADRLGGQ 174 (415)
T ss_pred cCeEEEECCcHHHHHHHHHHHHcCCeEEEEEcccccchh
Confidence 479999999999999999999999999999998876544
No 289
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=97.89 E-value=1.4e-05 Score=71.43 Aligned_cols=33 Identities=45% Similarity=0.725 Sum_probs=30.7
Q ss_pred cEEEECCChhHHHHHHHHHHcCCcEEEEccCCC
Q 048009 19 DALVIGGGHNGLTAAAYLARAGLSVAVLERRHV 51 (531)
Q Consensus 19 dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~ 51 (531)
||+|||||++|++||..|++.|++|+|+|+.+.
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~~~ 33 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARPGAKVLIIEKSPG 33 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEESSSSH
T ss_pred CEEEEecHHHHHHHHHHHhcCCCeEEEEecccc
Confidence 799999999999999999999999999988653
No 290
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.87 E-value=0.00019 Score=69.67 Aligned_cols=41 Identities=27% Similarity=0.464 Sum_probs=34.8
Q ss_pred CCcEEEECCChhHHHHHHHHHHc--C-CcEEEEccCCCCCceee
Q 048009 17 KWDALVIGGGHNGLTAAAYLARA--G-LSVAVLERRHVIGGAAV 57 (531)
Q Consensus 17 ~~dvvIIGaGiaGL~aA~~L~~~--G-~~V~v~E~~~~~GG~~~ 57 (531)
+++|+|||+|.+|+..|.+|.+. . ..|.|||+.+..|+-+.
T Consensus 1 ~~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~G~Gia 44 (474)
T COG4529 1 MFKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNFGQGIA 44 (474)
T ss_pred CceEEEECCchHHHHHHHHHHhCCCCCCceEEeccccccCCCcc
Confidence 47999999999999999999986 2 22999999999886543
No 291
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=97.85 E-value=0.00012 Score=73.90 Aligned_cols=34 Identities=29% Similarity=0.371 Sum_probs=31.5
Q ss_pred CcEEEECCChhHHHHHHHHHHcCCcEEEEccCCC
Q 048009 18 WDALVIGGGHNGLTAAAYLARAGLSVAVLERRHV 51 (531)
Q Consensus 18 ~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~ 51 (531)
.+|+|||||..|+-.|..|++.|.+|+|+|+.++
T Consensus 149 ~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~ 182 (438)
T PRK13512 149 DKALVVGAGYISLEVLENLYERGLHPTLIHRSDK 182 (438)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEecccc
Confidence 5899999999999999999999999999998654
No 292
>COG5044 MRS6 RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]
Probab=97.83 E-value=0.00045 Score=64.25 Aligned_cols=63 Identities=13% Similarity=0.232 Sum_probs=48.9
Q ss_pred CCCccccccCchHHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEec
Q 048009 225 NPGIWSYVEGGMGSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSN 290 (531)
Q Consensus 225 ~~~~~~~~~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~a 290 (531)
....+.||+-|..+|++.+.+...-.|+++.+|+.+.+|.... . |.+|.. ++.+..|.+||..
T Consensus 217 g~~pyLyp~YGl~El~QGFaRssav~GgtymLn~~i~ein~tk-~-v~~v~~-~~~~~ka~KiI~~ 279 (434)
T COG5044 217 GKSPYLYPRYGLGELSQGFARSSAVYGGTYMLNQAIDEINETK-D-VETVDK-GSLTQKAGKIISS 279 (434)
T ss_pred CCCcceeeccCchhhhHHHHHhhhccCceeecCcchhhhcccc-c-eeeeec-CcceeecCcccCC
Confidence 3445568999999999999998888899999999999998866 3 323322 3446889998883
No 293
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=97.82 E-value=0.00017 Score=71.22 Aligned_cols=44 Identities=11% Similarity=0.074 Sum_probs=34.8
Q ss_pred HHHcCcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChHh
Q 048009 247 AREAGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYK 295 (531)
Q Consensus 247 ~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~~ 295 (531)
+++.|++++++++|++|..++ . .|.+ +++++.+|+||+|+|...
T Consensus 68 ~~~~gv~~~~~~~V~~id~~~-~---~v~~-~~~~~~yd~LVlATG~~~ 111 (377)
T PRK04965 68 AEQFNLRLFPHTWVTDIDAEA-Q---VVKS-QGNQWQYDKLVLATGASA 111 (377)
T ss_pred HHhCCCEEECCCEEEEEECCC-C---EEEE-CCeEEeCCEEEECCCCCC
Confidence 456799999999999998765 3 2444 566799999999999754
No 294
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=97.81 E-value=0.0002 Score=72.05 Aligned_cols=49 Identities=12% Similarity=0.163 Sum_probs=38.0
Q ss_pred HHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChHh
Q 048009 243 IGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYK 295 (531)
Q Consensus 243 l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~~ 295 (531)
+.+.+++.|++++++++|++|..+ +.+ +.+.+|+++.+|.||+++|...
T Consensus 185 ~~~~l~~~gV~v~~~~~v~~i~~~--~~~--v~~~~g~~i~~D~vi~a~G~~p 233 (427)
T TIGR03385 185 VEEELKKHEINLRLNEEVDSIEGE--ERV--KVFTSGGVYQADMVILATGIKP 233 (427)
T ss_pred HHHHHHHcCCEEEeCCEEEEEecC--CCE--EEEcCCCEEEeCEEEECCCccC
Confidence 344566789999999999999754 333 5667888899999999888653
No 295
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=97.81 E-value=3e-05 Score=80.72 Aligned_cols=42 Identities=38% Similarity=0.529 Sum_probs=39.3
Q ss_pred CCCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCCCCceee
Q 048009 16 KKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAV 57 (531)
Q Consensus 16 ~~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~GG~~~ 57 (531)
...+|+|||||++||++|+.|++.|++|+|+|+.+.+||...
T Consensus 136 ~g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~~GG~l~ 177 (564)
T PRK12771 136 TGKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKLGGMMR 177 (564)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCeee
Confidence 457899999999999999999999999999999999999865
No 296
>PRK02106 choline dehydrogenase; Validated
Probab=97.77 E-value=2.7e-05 Score=81.01 Aligned_cols=51 Identities=22% Similarity=0.293 Sum_probs=41.0
Q ss_pred HcCcEEEcCcceeEEEecCCCceeEEEeCCC--c--EEEcCeEEecCChHhHHhhcC
Q 048009 249 EAGAHIVTRAEVSQLMINDSGRVNGVQLADG--A--QVHSSIVLSNATPYKTFMDLV 301 (531)
Q Consensus 249 ~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g--~--~~~ad~VV~aa~~~~~~~~ll 301 (531)
..+.+|++++.|++|..++ +++++|++.+. . .+.++.||+|+|...+ .+||
T Consensus 213 ~~nl~i~~~a~V~rI~~~~-~~a~GV~~~~~~~~~~~~~ak~VILaaGai~T-P~LL 267 (560)
T PRK02106 213 RPNLTIVTHALTDRILFEG-KRAVGVEYERGGGRETARARREVILSAGAINS-PQLL 267 (560)
T ss_pred CCCcEEEcCCEEEEEEEeC-CeEEEEEEEeCCcEEEEEeeeeEEEccCCCCC-HHHH
Confidence 4569999999999999987 88999998543 2 4578999999998875 4544
No 297
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=97.74 E-value=2.8e-05 Score=83.59 Aligned_cols=34 Identities=32% Similarity=0.433 Sum_probs=32.0
Q ss_pred CcEEEECCChhHHHHHHHHHHc--CCcEEEEccCCC
Q 048009 18 WDALVIGGGHNGLTAAAYLARA--GLSVAVLERRHV 51 (531)
Q Consensus 18 ~dvvIIGaGiaGL~aA~~L~~~--G~~V~v~E~~~~ 51 (531)
++|+|||||++||+||+.|+++ |++|+|+|+++.
T Consensus 1 m~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~ 36 (765)
T PRK08255 1 MRIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRP 36 (765)
T ss_pred CeEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCC
Confidence 4899999999999999999998 899999999875
No 298
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=97.74 E-value=0.00034 Score=70.89 Aligned_cols=51 Identities=20% Similarity=0.308 Sum_probs=38.3
Q ss_pred HHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChHh
Q 048009 242 AIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYK 295 (531)
Q Consensus 242 ~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~~ 295 (531)
.+.+.+++.|++++++++|++|.. + +++..+.++++ ++.+|.||+++|...
T Consensus 196 ~l~~~l~~~gI~v~~~~~v~~i~~-~-~~~~~v~~~~~-~i~~d~vi~a~G~~p 246 (444)
T PRK09564 196 VMEEELRENGVELHLNEFVKSLIG-E-DKVEGVVTDKG-EYEADVVIVATGVKP 246 (444)
T ss_pred HHHHHHHHCCCEEEcCCEEEEEec-C-CcEEEEEeCCC-EEEcCEEEECcCCCc
Confidence 345556788999999999999964 3 45555666555 699999999988653
No 299
>PRK13984 putative oxidoreductase; Provisional
Probab=97.73 E-value=4.4e-05 Score=80.33 Aligned_cols=43 Identities=35% Similarity=0.515 Sum_probs=39.6
Q ss_pred CCCCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCCCCceee
Q 048009 15 EKKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAAV 57 (531)
Q Consensus 15 ~~~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~GG~~~ 57 (531)
....+|+|||+|.+|++||..|+++|++|+|+|+.+.+||...
T Consensus 281 ~~~~~v~IIGaG~aGl~aA~~L~~~G~~v~vie~~~~~gG~~~ 323 (604)
T PRK13984 281 KKNKKVAIVGSGPAGLSAAYFLATMGYEVTVYESLSKPGGVMR 323 (604)
T ss_pred cCCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceEe
Confidence 3568899999999999999999999999999999999998764
No 300
>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=97.71 E-value=0.00035 Score=60.19 Aligned_cols=57 Identities=16% Similarity=0.203 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChHhHHhhc
Q 048009 238 SVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYKTFMDL 300 (531)
Q Consensus 238 ~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~~~~~~l 300 (531)
.|.+.|.++.++.|.+|..+ .|.++..+. .-.+ |.+ |.+.+.+|.||+|+|... .+|
T Consensus 71 ~l~d~mrkqs~r~Gt~i~tE-tVskv~~ss-kpF~-l~t-d~~~v~~~avI~atGAsA--kRl 127 (322)
T KOG0404|consen 71 ELMDKMRKQSERFGTEIITE-TVSKVDLSS-KPFK-LWT-DARPVTADAVILATGASA--KRL 127 (322)
T ss_pred HHHHHHHHHHHhhcceeeee-ehhhccccC-CCeE-EEe-cCCceeeeeEEEecccce--eee
Confidence 67888999999999999887 789998875 3333 545 445699999999999877 555
No 301
>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]
Probab=97.56 E-value=0.00011 Score=68.50 Aligned_cols=45 Identities=20% Similarity=0.248 Sum_probs=40.1
Q ss_pred cCCCCcEEEECCChhHHHHHHHHHHc--CCcEEEEccCCCCCceeec
Q 048009 14 KEKKWDALVIGGGHNGLTAAAYLARA--GLSVAVLERRHVIGGAAVT 58 (531)
Q Consensus 14 ~~~~~dvvIIGaGiaGL~aA~~L~~~--G~~V~v~E~~~~~GG~~~s 58 (531)
++.+++|.|||+|+||+.+|..|.++ +.+|.|+|+.+.+.|..+.
T Consensus 17 qs~~p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvPFGLvRy 63 (468)
T KOG1800|consen 17 QSSTPRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVPFGLVRY 63 (468)
T ss_pred ccCCceEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCcccceeee
Confidence 34567999999999999999999985 6899999999999999764
No 302
>KOG2960 consensus Protein involved in thiamine biosynthesis and DNA damage tolerance [General function prediction only]
Probab=97.53 E-value=2.2e-05 Score=66.70 Aligned_cols=41 Identities=37% Similarity=0.596 Sum_probs=36.9
Q ss_pred CCcEEEECCChhHHHHHHHHHHc--CCcEEEEccCCCCCceee
Q 048009 17 KWDALVIGGGHNGLTAAAYLARA--GLSVAVLERRHVIGGAAV 57 (531)
Q Consensus 17 ~~dvvIIGaGiaGL~aA~~L~~~--G~~V~v~E~~~~~GG~~~ 57 (531)
..||+|||+|.+||+|||..+++ ..+|.|+|.+-.+||-++
T Consensus 76 esDvviVGAGSaGLsAAY~I~~~rPdlkvaIIE~SVaPGGGaW 118 (328)
T KOG2960|consen 76 ESDVVIVGAGSAGLSAAYVIAKNRPDLKVAIIESSVAPGGGAW 118 (328)
T ss_pred ccceEEECCCccccceeeeeeccCCCceEEEEEeeecCCCccc
Confidence 47999999999999999999965 589999999999998764
No 303
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=97.51 E-value=0.00079 Score=65.11 Aligned_cols=58 Identities=22% Similarity=0.252 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChHh
Q 048009 238 SVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYK 295 (531)
Q Consensus 238 ~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~~ 295 (531)
.+.+.+...++++|+++++++.+.++..+.+|++..|.+.||+++.||.||+.+|...
T Consensus 256 ~i~~~~~~y~e~kgVk~~~~t~~s~l~~~~~Gev~~V~l~dg~~l~adlvv~GiG~~p 313 (478)
T KOG1336|consen 256 SIGQFYEDYYENKGVKFYLGTVVSSLEGNSDGEVSEVKLKDGKTLEADLVVVGIGIKP 313 (478)
T ss_pred HHHHHHHHHHHhcCeEEEEecceeecccCCCCcEEEEEeccCCEeccCeEEEeecccc
Confidence 3444456678899999999999999998777899999999999999999999888665
No 304
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.
Probab=97.49 E-value=0.0013 Score=63.77 Aligned_cols=61 Identities=16% Similarity=0.127 Sum_probs=48.6
Q ss_pred cc-cCchHHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCCC-cEEEcCeEEecCChHh
Q 048009 231 YV-EGGMGSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADG-AQVHSSIVLSNATPYK 295 (531)
Q Consensus 231 ~~-~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g-~~~~ad~VV~aa~~~~ 295 (531)
|| ..-...+.++|...+++.|++|+++++|++| ++ ++ ..|.+.++ ..+.||+||+|+|...
T Consensus 79 fP~S~~A~sVv~~L~~~l~~~gV~i~~~~~V~~i--~~-~~-~~v~~~~~~~~~~a~~vIlAtGG~s 141 (376)
T TIGR03862 79 FPVEMKAAPLLRAWLKRLAEQGVQFHTRHRWIGW--QG-GT-LRFETPDGQSTIEADAVVLALGGAS 141 (376)
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEE--eC-Cc-EEEEECCCceEEecCEEEEcCCCcc
Confidence 55 4456789999999999999999999999999 33 33 45776543 4699999999999754
No 305
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=97.46 E-value=0.00054 Score=66.05 Aligned_cols=35 Identities=40% Similarity=0.482 Sum_probs=27.6
Q ss_pred CCcEEEECCChhHHHHHHHHHHcC-CcEEEEccCCC
Q 048009 17 KWDALVIGGGHNGLTAAAYLARAG-LSVAVLERRHV 51 (531)
Q Consensus 17 ~~dvvIIGaGiaGL~aA~~L~~~G-~~V~v~E~~~~ 51 (531)
.+|+++||.|+++|+.|..|.+.+ .+++.||+.+.
T Consensus 2 ~~D~igIG~GP~nLslA~~l~~~~~~~~~f~e~~~~ 37 (341)
T PF13434_consen 2 IYDLIGIGFGPFNLSLAALLEEHGDLKALFLERRPS 37 (341)
T ss_dssp EESEEEE--SHHHHHHHHHHHHHH---EEEEES-SS
T ss_pred ceeEEEEeeCHHHHHHHHHhhhcCCCCEEEEecCCC
Confidence 489999999999999999999986 99999999774
No 306
>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=97.46 E-value=0.00018 Score=65.88 Aligned_cols=68 Identities=16% Similarity=0.169 Sum_probs=50.9
Q ss_pred ccCchHHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCC---Cc--EEEcCeEEecCChHhHHhhc
Q 048009 232 VEGGMGSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLAD---GA--QVHSSIVLSNATPYKTFMDL 300 (531)
Q Consensus 232 ~~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~---g~--~~~ad~VV~aa~~~~~~~~l 300 (531)
.+|-.+++++.+.+.++++|+++.-.+..++|+..++|+. .|...+ ++ +-.+|.|++|+|-.....+|
T Consensus 233 LrGFDqdmae~v~~~m~~~Gikf~~~~vp~~Veq~~~g~l-~v~~k~t~t~~~~~~~ydTVl~AiGR~~~~~~l 305 (503)
T KOG4716|consen 233 LRGFDQDMAELVAEHMEERGIKFLRKTVPERVEQIDDGKL-RVFYKNTNTGEEGEEEYDTVLWAIGRKALTDDL 305 (503)
T ss_pred cccccHHHHHHHHHHHHHhCCceeecccceeeeeccCCcE-EEEeecccccccccchhhhhhhhhccccchhhc
Confidence 3777889999999999999999998888888887665653 244332 22 45789999998876644333
No 307
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]
Probab=97.46 E-value=0.00012 Score=75.31 Aligned_cols=63 Identities=24% Similarity=0.298 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHHc-CcEEEcCcceeEEEecCCCceeEEEeC--CC---c-EEEcCeEEecCChHhHHhhcC
Q 048009 237 GSVSMAIGSAAREA-GAHIVTRAEVSQLMINDSGRVNGVQLA--DG---A-QVHSSIVLSNATPYKTFMDLV 301 (531)
Q Consensus 237 ~~l~~~l~~~~~~~-G~~i~~~~~V~~I~~~~~g~~~~V~~~--~g---~-~~~ad~VV~aa~~~~~~~~ll 301 (531)
.....++...+.++ +.+|++++.|++|..++ +++++|.+. ++ + .+.++.||++++...+ .+|+
T Consensus 202 ~sa~~a~l~~a~~~~nl~v~t~a~v~ri~~~~-~r~~gv~~~~~~~~~~~~~~a~~~viL~AGai~S-p~LL 271 (542)
T COG2303 202 WSAARAYLKPALKRPNLTLLTGARVRRILLEG-DRAVGVEVEIGDGGTIETAVAAREVVLAAGAINS-PKLL 271 (542)
T ss_pred eechhhcchhHhcCCceEEecCCEEEEEEEEC-CeeEEEEEEeCCCCceEEEecCceEEEeccccCC-HHHH
Confidence 34455555554455 49999999999999998 888887775 23 2 2567889999998875 4444
No 308
>PRK10262 thioredoxin reductase; Provisional
Probab=97.39 E-value=0.0011 Score=63.85 Aligned_cols=34 Identities=32% Similarity=0.571 Sum_probs=31.4
Q ss_pred CCcEEEECCChhHHHHHHHHHHcCCcEEEEccCC
Q 048009 17 KWDALVIGGGHNGLTAAAYLARAGLSVAVLERRH 50 (531)
Q Consensus 17 ~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~ 50 (531)
..+|+|||+|..|+-.|..|++.|.+|+++++.+
T Consensus 146 g~~vvVvGgG~~g~e~A~~l~~~~~~Vtlv~~~~ 179 (321)
T PRK10262 146 NQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRD 179 (321)
T ss_pred CCEEEEECCCHHHHHHHHHHHhhCCEEEEEEECC
Confidence 4689999999999999999999999999999864
No 309
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=97.35 E-value=0.00021 Score=71.98 Aligned_cols=53 Identities=9% Similarity=0.106 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChHh
Q 048009 237 GSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYK 295 (531)
Q Consensus 237 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~~ 295 (531)
..+.+.+.+.+++.|++++++++|++|.. . .|++.+|+++.+|.||+++|...
T Consensus 189 ~~~~~~l~~~l~~~gI~i~~~~~v~~i~~---~---~v~~~~g~~~~~D~vl~a~G~~p 241 (438)
T PRK13512 189 ADMNQPILDELDKREIPYRLNEEIDAING---N---EVTFKSGKVEHYDMIIEGVGTHP 241 (438)
T ss_pred HHHHHHHHHHHHhcCCEEEECCeEEEEeC---C---EEEECCCCEEEeCEEEECcCCCc
Confidence 46788888999999999999999999952 2 26677888899999999988543
No 310
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.33 E-value=0.00069 Score=62.45 Aligned_cols=58 Identities=17% Similarity=0.243 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHcCcEEEcCcceeEEEecC-CCceeEEEeCCCcEEEcCeEEecCChHh
Q 048009 238 SVSMAIGSAAREAGAHIVTRAEVSQLMIND-SGRVNGVQLADGAQVHSSIVLSNATPYK 295 (531)
Q Consensus 238 ~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~-~g~~~~V~~~~g~~~~ad~VV~aa~~~~ 295 (531)
+++.+|.+..++..++|..-.+++++.... ++....|++++|..+.++.||+++|...
T Consensus 267 kl~~ale~Hv~~Y~vDimn~qra~~l~~a~~~~~l~ev~l~nGavLkaktvIlstGArW 325 (520)
T COG3634 267 KLAAALEAHVKQYDVDVMNLQRASKLEPAAVEGGLIEVELANGAVLKARTVILATGARW 325 (520)
T ss_pred HHHHHHHHHHhhcCchhhhhhhhhcceecCCCCccEEEEecCCceeccceEEEecCcch
Confidence 677778888888888888888888887732 2445679999999999999999999877
No 311
>PLN02785 Protein HOTHEAD
Probab=97.32 E-value=0.00025 Score=73.50 Aligned_cols=36 Identities=42% Similarity=0.675 Sum_probs=32.7
Q ss_pred CCCCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCC
Q 048009 15 EKKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHV 51 (531)
Q Consensus 15 ~~~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~ 51 (531)
...||+||||||.+|+.+|.+|++ +.+|+|+|+...
T Consensus 53 ~~~yD~IIVG~G~aG~~lA~~Ls~-~~~VLllE~G~~ 88 (587)
T PLN02785 53 DSAYDYIVVGGGTAGCPLAATLSQ-NFSVLLLERGGV 88 (587)
T ss_pred cccCCEEEECcCHHHHHHHHHHhc-CCcEEEEecCCC
Confidence 346999999999999999999999 699999999864
No 312
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=97.28 E-value=0.002 Score=65.06 Aligned_cols=33 Identities=36% Similarity=0.514 Sum_probs=30.7
Q ss_pred CcEEEECCChhHHHHHHHHHHcCCcEEEEccCC
Q 048009 18 WDALVIGGGHNGLTAAAYLARAGLSVAVLERRH 50 (531)
Q Consensus 18 ~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~ 50 (531)
.+|+|||||..|+-+|..|++.|.+|+|+++.+
T Consensus 273 k~VvVIGgG~~a~d~A~~l~~~G~~Vtlv~~~~ 305 (449)
T TIGR01316 273 KSVVVIGGGNTAVDSARTALRLGAEVHCLYRRT 305 (449)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCEEEEEeecC
Confidence 589999999999999999999999999998853
No 313
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=97.17 E-value=0.0023 Score=65.88 Aligned_cols=34 Identities=44% Similarity=0.484 Sum_probs=30.7
Q ss_pred CCcEEEECCChhHHHHHHHHHHcCCcEEEEccCC
Q 048009 17 KWDALVIGGGHNGLTAAAYLARAGLSVAVLERRH 50 (531)
Q Consensus 17 ~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~ 50 (531)
..+|+|||||..|+-+|..|++.|.+|+|+|+.+
T Consensus 352 ~k~VvViGgG~~g~E~A~~L~~~g~~Vtli~~~~ 385 (515)
T TIGR03140 352 GKDVAVIGGGNSGIEAAIDLAGIVRHVTVLEFAD 385 (515)
T ss_pred CCEEEEECCcHHHHHHHHHHHhcCcEEEEEEeCC
Confidence 3589999999999999999999999999998643
No 314
>KOG4405 consensus GDP dissociation inhibitor [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.16 E-value=0.023 Score=53.94 Aligned_cols=119 Identities=13% Similarity=0.141 Sum_probs=70.5
Q ss_pred HHHHHhccHHHHhhcccCChhHHHHHh-hhhhhccCCCCCCCChHHH--HHHHHhhccCCCCCccccccCchHHHHHHHH
Q 048009 168 FVDLLLSPASKVLNKWFETDVLKATLA-TDAVIGTMSSVHTPGSGYV--LLHHVMGETDGNPGIWSYVEGGMGSVSMAIG 244 (531)
Q Consensus 168 ~~~~~~~~~~~~l~~~~~~~~l~~~~~-~~~~~g~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~gG~~~l~~~l~ 244 (531)
..++...++.++|...--.+.++..+. ..++.+. ....+...... .....+++ +....+-||.-|.+.|.+.+-
T Consensus 217 ~~~~~e~~F~EyL~~~rltp~lqs~vl~aIaM~~~-~~~tt~eGm~at~~fl~slGr--fgntpfLfPlYGqGELpQcFC 293 (547)
T KOG4405|consen 217 YVEFRERPFSEYLKTMRLTPKLQSIVLHAIAMLSE-SQLTTIEGMDATKNFLTSLGR--FGNTPFLFPLYGQGELPQCFC 293 (547)
T ss_pred HHHhhcCcHHHHHHhcCCChhhHHHHHHHHHhcCc-ccccHHHHHHHHHHHHHHhhc--cCCCcceeeccCCCcchHHHH
Confidence 344455677777776555555555443 2222221 11111111111 11112332 222335689999999999999
Q ss_pred HHHHHcCcEEEcCcceeEEEecCCCc--eeEEEeCCCcEEEcCeEEec
Q 048009 245 SAAREAGAHIVTRAEVSQLMINDSGR--VNGVQLADGAQVHSSIVLSN 290 (531)
Q Consensus 245 ~~~~~~G~~i~~~~~V~~I~~~~~g~--~~~V~~~~g~~~~ad~VV~a 290 (531)
+.+.-.|+-.-++..|+.|..+. +. +..+....|+.+.+.++|++
T Consensus 294 RlcAVfGgIYcLr~~Vq~ivldk-~s~~~~~~l~s~g~ri~~k~~v~s 340 (547)
T KOG4405|consen 294 RLCAVFGGIYCLRRPVQAIVLDK-ESLDCKAILDSFGQRINAKNFVVS 340 (547)
T ss_pred HHHHHhcceEEeccchhheeecc-cccchhhhHhhhcchhcceeeeec
Confidence 99988899989999999999876 43 23233346777888888774
No 315
>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=97.08 E-value=0.00056 Score=62.57 Aligned_cols=37 Identities=38% Similarity=0.460 Sum_probs=33.7
Q ss_pred CCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCCCC
Q 048009 17 KWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIG 53 (531)
Q Consensus 17 ~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~G 53 (531)
...|-|||||++|.-|||.++++|..|.++|-++.-+
T Consensus 3 ~~~i~VIGaGLAGSEAAwqiA~~Gv~V~L~EMRp~k~ 39 (439)
T COG1206 3 QQPINVIGAGLAGSEAAWQIAKRGVPVILYEMRPVKG 39 (439)
T ss_pred CCceEEEcccccccHHHHHHHHcCCcEEEEEcccccC
Confidence 4679999999999999999999999999999987644
No 316
>PRK12831 putative oxidoreductase; Provisional
Probab=97.03 E-value=0.005 Score=62.44 Aligned_cols=34 Identities=32% Similarity=0.456 Sum_probs=30.9
Q ss_pred CCcEEEECCChhHHHHHHHHHHcCCcEEEEccCC
Q 048009 17 KWDALVIGGGHNGLTAAAYLARAGLSVAVLERRH 50 (531)
Q Consensus 17 ~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~ 50 (531)
..+|+|||||..|+-+|..|.+.|.+|+|+++.+
T Consensus 281 gk~VvVIGgG~va~d~A~~l~r~Ga~Vtlv~r~~ 314 (464)
T PRK12831 281 GKKVAVVGGGNVAMDAARTALRLGAEVHIVYRRS 314 (464)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCEEEEEeecC
Confidence 3689999999999999999999999999998743
No 317
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=96.80 E-value=0.0015 Score=55.44 Aligned_cols=32 Identities=38% Similarity=0.485 Sum_probs=30.5
Q ss_pred cEEEECCChhHHHHHHHHHHcCCcEEEEccCC
Q 048009 19 DALVIGGGHNGLTAAAYLARAGLSVAVLERRH 50 (531)
Q Consensus 19 dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~ 50 (531)
+|+|||||..|.+.|..|+++|++|+|+.++.
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~ 32 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDE 32 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEEEETSCH
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEEEEeccH
Confidence 58999999999999999999999999999975
No 318
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=96.74 E-value=0.01 Score=60.29 Aligned_cols=33 Identities=39% Similarity=0.572 Sum_probs=30.0
Q ss_pred CCcEEEECCChhHHHHHHHHHHcCC-cEEEEccC
Q 048009 17 KWDALVIGGGHNGLTAAAYLARAGL-SVAVLERR 49 (531)
Q Consensus 17 ~~dvvIIGaGiaGL~aA~~L~~~G~-~V~v~E~~ 49 (531)
..+|+|||||..|+-+|..|++.|. +|+|+++.
T Consensus 273 g~~VvViGgG~~g~e~A~~l~~~G~~~Vtlv~~~ 306 (457)
T PRK11749 273 GKRVVVIGGGNTAMDAARTAKRLGAESVTIVYRR 306 (457)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeec
Confidence 4689999999999999999999997 79999874
No 319
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=96.60 E-value=0.0058 Score=62.54 Aligned_cols=51 Identities=16% Similarity=0.375 Sum_probs=44.0
Q ss_pred HHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChH
Q 048009 242 AIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPY 294 (531)
Q Consensus 242 ~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~ 294 (531)
.|.+.+++.|.++++++.+++|.. . +++.+|+++||+.+.||-||.|+|..
T Consensus 192 lL~~~le~~Gi~~~l~~~t~ei~g-~-~~~~~vr~~DG~~i~ad~VV~a~GIr 242 (793)
T COG1251 192 LLRRKLEDLGIKVLLEKNTEEIVG-E-DKVEGVRFADGTEIPADLVVMAVGIR 242 (793)
T ss_pred HHHHHHHhhcceeecccchhhhhc-C-cceeeEeecCCCcccceeEEEecccc
Confidence 356667889999999999988886 4 77889999999999999999998855
No 320
>KOG1238 consensus Glucose dehydrogenase/choline dehydrogenase/mandelonitrile lyase (GMC oxidoreductase family) [General function prediction only]
Probab=96.51 E-value=0.0026 Score=64.24 Aligned_cols=38 Identities=34% Similarity=0.484 Sum_probs=34.5
Q ss_pred CCCCcEEEECCChhHHHHHHHHHHc-CCcEEEEccCCCC
Q 048009 15 EKKWDALVIGGGHNGLTAAAYLARA-GLSVAVLERRHVI 52 (531)
Q Consensus 15 ~~~~dvvIIGaGiaGL~aA~~L~~~-G~~V~v~E~~~~~ 52 (531)
...||.||||||-||...|.+|++. ..+|+|+|+...+
T Consensus 55 ~~~yDyIVVGgGtAGcvlAarLSEn~~~~VLLLEaGg~~ 93 (623)
T KOG1238|consen 55 DSSYDYIVVGGGTAGCVLAARLSENPNWSVLLLEAGGDP 93 (623)
T ss_pred ccCCCEEEECCCchhHHHHHhhccCCCceEEEEecCCCC
Confidence 4579999999999999999999997 5899999998765
No 321
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=96.37 E-value=0.0045 Score=53.71 Aligned_cols=32 Identities=41% Similarity=0.579 Sum_probs=28.3
Q ss_pred cEEEECCChhHHHHHHHHHHcCCcEEEEccCC
Q 048009 19 DALVIGGGHNGLTAAAYLARAGLSVAVLERRH 50 (531)
Q Consensus 19 dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~ 50 (531)
+|+|||+|..|..-|..++..|++|+++|.++
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~ 32 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSP 32 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSH
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCcEEEEECCh
Confidence 58999999999999999999999999999964
No 322
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=96.35 E-value=0.0041 Score=54.17 Aligned_cols=34 Identities=35% Similarity=0.318 Sum_probs=27.5
Q ss_pred CcEEEECCChhHHHHHHHHHHcCCcEEEEccCCC
Q 048009 18 WDALVIGGGHNGLTAAAYLARAGLSVAVLERRHV 51 (531)
Q Consensus 18 ~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~ 51 (531)
++|.|||.|..||..|..|+++|++|+.+|.++.
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~ 34 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEKGHQVIGVDIDEE 34 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHTTSEEEEE-S-HH
T ss_pred CEEEEECCCcchHHHHHHHHhCCCEEEEEeCChH
Confidence 5799999999999999999999999999999753
No 323
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=96.26 E-value=0.043 Score=55.91 Aligned_cols=47 Identities=21% Similarity=0.328 Sum_probs=35.7
Q ss_pred HHHHcCcEEEcCcceeEEEecCCCceeEEEeC-----CC---------cEEEcCeEEecCCh
Q 048009 246 AAREAGAHIVTRAEVSQLMINDSGRVNGVQLA-----DG---------AQVHSSIVLSNATP 293 (531)
Q Consensus 246 ~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~-----~g---------~~~~ad~VV~aa~~ 293 (531)
.+++.|+++++++.+++|..++ |++.+|++. +| .++.+|.||+|+|.
T Consensus 338 ~~~~~GV~i~~~~~~~~i~~~~-g~v~~V~~~~~~~~~g~~~~~~g~~~~i~~D~VI~A~G~ 398 (471)
T PRK12810 338 NAHEEGVEREFNVQTKEFEGEN-GKVTGVKVVRTELGEGDFEPVEGSEFVLPADLVLLAMGF 398 (471)
T ss_pred HHHHcCCeEEeccCceEEEccC-CEEEEEEEEEEEecCCCccccCCceEEEECCEEEECcCc
Confidence 3567799999999999997655 787776643 22 36889999998873
No 324
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=96.17 E-value=0.054 Score=51.77 Aligned_cols=37 Identities=32% Similarity=0.333 Sum_probs=33.1
Q ss_pred CCCCcEEEECCChhHHHHHHHHHHcC-CcEEEEccCCC
Q 048009 15 EKKWDALVIGGGHNGLTAAAYLARAG-LSVAVLERRHV 51 (531)
Q Consensus 15 ~~~~dvvIIGaGiaGL~aA~~L~~~G-~~V~v~E~~~~ 51 (531)
+..+|++.||-|+.-|+.|+.|.+++ .+++.+||.+.
T Consensus 3 ~~~~DliGIG~GPfNL~LA~ll~e~~~~~~lFLerkp~ 40 (436)
T COG3486 3 AEVLDLIGIGIGPFNLSLAALLEEHSGLKSLFLERKPD 40 (436)
T ss_pred CcceeeEEEccCchHHHHHHHhccccCcceEEEecCCC
Confidence 35699999999999999999999985 88999999764
No 325
>KOG3855 consensus Monooxygenase involved in coenzyme Q (ubiquinone) biosynthesis [Coenzyme transport and metabolism; Energy production and conversion]
Probab=96.15 E-value=0.0065 Score=57.71 Aligned_cols=36 Identities=33% Similarity=0.551 Sum_probs=31.5
Q ss_pred CCCcEEEECCChhHHHHHHHHHHc----CCcEEEEccCCC
Q 048009 16 KKWDALVIGGGHNGLTAAAYLARA----GLSVAVLERRHV 51 (531)
Q Consensus 16 ~~~dvvIIGaGiaGL~aA~~L~~~----G~~V~v~E~~~~ 51 (531)
..+||+|||||+.|++.|..|... -++|+|+|..+.
T Consensus 35 ~~~dVvIvGgGpvg~aLAa~l~snp~~~~~kv~Lld~~~s 74 (481)
T KOG3855|consen 35 AKYDVVIVGGGPVGLALAAALGSNPPFQDKKVLLLDAGDS 74 (481)
T ss_pred ccCCEEEECCchHHHHHHHHhccCCccchheeeEEecccC
Confidence 479999999999999999999865 478999999843
No 326
>KOG3923 consensus D-aspartate oxidase [Amino acid transport and metabolism]
Probab=96.08 E-value=0.0066 Score=55.06 Aligned_cols=51 Identities=14% Similarity=0.075 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChHhHHhhcCCCC
Q 048009 238 SVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYKTFMDLVPGN 304 (531)
Q Consensus 238 ~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~~~~~~ll~~~ 304 (531)
.+...|.+.+.++|+++... +|+++..-. + -.+|.||.++|.+. .+|..++
T Consensus 152 ~ylpyl~k~l~e~Gvef~~r-~v~~l~E~~----------~---~~~DVivNCtGL~a--~~L~gDd 202 (342)
T KOG3923|consen 152 KYLPYLKKRLTENGVEFVQR-RVESLEEVA----------R---PEYDVIVNCTGLGA--GKLAGDD 202 (342)
T ss_pred hhhHHHHHHHHhcCcEEEEe-eeccHHHhc----------c---CCCcEEEECCcccc--ccccCCc
Confidence 56777889999999998654 777665321 1 36899999999888 6777654
No 327
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=96.06 E-value=0.049 Score=55.36 Aligned_cols=34 Identities=29% Similarity=0.435 Sum_probs=30.0
Q ss_pred CCcEEEECCChhHHHHHHHHHHcCC-cEEEEccCC
Q 048009 17 KWDALVIGGGHNGLTAAAYLARAGL-SVAVLERRH 50 (531)
Q Consensus 17 ~~dvvIIGaGiaGL~aA~~L~~~G~-~V~v~E~~~ 50 (531)
..+|+|||+|..|+-+|..+.+.|. +|+|+++.+
T Consensus 282 gk~VvVIGgG~~a~d~A~~a~~~Ga~~Vtvv~r~~ 316 (467)
T TIGR01318 282 GKRVVVLGGGDTAMDCVRTAIRLGAASVTCAYRRD 316 (467)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCCeEEEEEecC
Confidence 3689999999999999999999995 799998854
No 328
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.00 E-value=0.0075 Score=61.41 Aligned_cols=34 Identities=38% Similarity=0.460 Sum_probs=31.9
Q ss_pred cEEEECCChhHHHHHHHHHHcCCcEEEEccCCCC
Q 048009 19 DALVIGGGHNGLTAAAYLARAGLSVAVLERRHVI 52 (531)
Q Consensus 19 dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~ 52 (531)
+|.|||.|.+|++||..|+++|++|+++|++...
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~~~ 35 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQGWEVVVSDRNDSP 35 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCEEEEECCCCch
Confidence 6899999999999999999999999999998764
No 329
>PF07156 Prenylcys_lyase: Prenylcysteine lyase; InterPro: IPR010795 This entry represents a conserved region found in a group of prenylcysteine lyases (1.8.3.5 from EC) that are approximately 500 residues long. Prenylcysteine lyase is a FAD-dependent thioether oxidase that degrades a variety of prenylcysteines, producing free cysteine, an isoprenoid aldehyde and hydrogen peroxide as products of the reaction []. It has been noted that this enzyme has considerable homology with ClP55, a 55 kDa protein that is associated with chloride ion pumps [].; GO: 0016670 oxidoreductase activity, acting on a sulfur group of donors, oxygen as acceptor, 0030328 prenylcysteine catabolic process, 0055114 oxidation-reduction process
Probab=95.97 E-value=0.052 Score=52.72 Aligned_cols=66 Identities=21% Similarity=0.342 Sum_probs=45.9
Q ss_pred CCCCccccccCchHHHHHHHHHHHHHcCcEEEcCcceeEE-EecCCCc-eeEEEeCC--Cc-EEEcCeEEecCChH
Q 048009 224 GNPGIWSYVEGGMGSVSMAIGSAAREAGAHIVTRAEVSQL-MINDSGR-VNGVQLAD--GA-QVHSSIVLSNATPY 294 (531)
Q Consensus 224 ~~~~~~~~~~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~I-~~~~~g~-~~~V~~~~--g~-~~~ad~VV~aa~~~ 294 (531)
...|.| -++||+.++.+.|.+ ..|+++ ++++|++| ...+++. ...|...+ +. .-.+|.||+|++..
T Consensus 116 a~~gl~-sV~GGN~qI~~~ll~---~S~A~v-l~~~Vt~I~~~~~~~~~~y~v~~~~~~~~~~~~yD~VVIAtPl~ 186 (368)
T PF07156_consen 116 ATGGLW-SVEGGNWQIFEGLLE---ASGANV-LNTTVTSITRRSSDGYSLYEVTYKSSSGTESDEYDIVVIATPLQ 186 (368)
T ss_pred ccCCce-EecCCHHHHHHHHHH---HccCcE-ecceeEEEEeccCCCceeEEEEEecCCCCccccCCEEEECCCcc
Confidence 345677 899999999999955 678899 89999999 3333232 23454443 22 34579999976654
No 330
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.92 E-value=0.0093 Score=61.08 Aligned_cols=35 Identities=29% Similarity=0.353 Sum_probs=32.1
Q ss_pred CCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCC
Q 048009 17 KWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHV 51 (531)
Q Consensus 17 ~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~ 51 (531)
..+|+|||+|.+|+++|..|+++|++|+++|+++.
T Consensus 16 ~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~~ 50 (480)
T PRK01438 16 GLRVVVAGLGVSGFAAADALLELGARVTVVDDGDD 50 (480)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCch
Confidence 35799999999999999999999999999998764
No 331
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=95.91 E-value=0.011 Score=56.73 Aligned_cols=37 Identities=35% Similarity=0.353 Sum_probs=33.3
Q ss_pred cCCCCcEEEECCChhHHHHHHHHHHcCCcEEEEccCC
Q 048009 14 KEKKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRH 50 (531)
Q Consensus 14 ~~~~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~ 50 (531)
++..++|+|||+|..|..-|..|++.|++|+++.|+.
T Consensus 2 ~~~~m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~ 38 (313)
T PRK06249 2 DSETPRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSD 38 (313)
T ss_pred CCcCcEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCC
Confidence 4456789999999999999999999999999999864
No 332
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=95.88 E-value=0.0093 Score=56.98 Aligned_cols=34 Identities=29% Similarity=0.340 Sum_probs=31.6
Q ss_pred CcEEEECCChhHHHHHHHHHHcCCcEEEEccCCC
Q 048009 18 WDALVIGGGHNGLTAAAYLARAGLSVAVLERRHV 51 (531)
Q Consensus 18 ~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~ 51 (531)
.+|.|||+|..|.+.|..|+++|++|+++++++.
T Consensus 3 ~~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~~ 36 (308)
T PRK06129 3 GSVAIIGAGLIGRAWAIVFARAGHEVRLWDADPA 36 (308)
T ss_pred cEEEEECccHHHHHHHHHHHHCCCeeEEEeCCHH
Confidence 4799999999999999999999999999999753
No 333
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=95.83 E-value=0.072 Score=56.77 Aligned_cols=33 Identities=27% Similarity=0.485 Sum_probs=28.8
Q ss_pred CCcEEEECCChhHHHHHHHHHHcCC-cEEEEccC
Q 048009 17 KWDALVIGGGHNGLTAAAYLARAGL-SVAVLERR 49 (531)
Q Consensus 17 ~~dvvIIGaGiaGL~aA~~L~~~G~-~V~v~E~~ 49 (531)
..+|+|||||..|+-+|..+.+.|. +|++++++
T Consensus 468 gk~VvVIGgG~~a~d~A~~a~r~ga~~Vt~i~~~ 501 (654)
T PRK12769 468 GLNVVVLGGGDTAMDCVRTALRHGASNVTCAYRR 501 (654)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCCeEEEeEec
Confidence 3589999999999999999999985 69988875
No 334
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.80 E-value=0.011 Score=55.67 Aligned_cols=34 Identities=35% Similarity=0.422 Sum_probs=31.6
Q ss_pred CcEEEECCChhHHHHHHHHHHcCCcEEEEccCCC
Q 048009 18 WDALVIGGGHNGLTAAAYLARAGLSVAVLERRHV 51 (531)
Q Consensus 18 ~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~ 51 (531)
.+|+|||+|..|..-|..|++.|++|+++|.++.
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~ 39 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARAGVDVLVFETTEE 39 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHH
Confidence 4799999999999999999999999999999753
No 335
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=95.78 E-value=0.069 Score=51.65 Aligned_cols=35 Identities=26% Similarity=0.318 Sum_probs=27.6
Q ss_pred CCCcEEEECCChhHHHHHHHHHHcCC--cEEEEccCC
Q 048009 16 KKWDALVIGGGHNGLTAAAYLARAGL--SVAVLERRH 50 (531)
Q Consensus 16 ~~~dvvIIGaGiaGL~aA~~L~~~G~--~V~v~E~~~ 50 (531)
...+|+|||||.++.-.+..|.+++. +|+++=|+.
T Consensus 189 ~~~~V~VVGgGQSAAEi~~~L~~~~~~~~V~~i~R~~ 225 (341)
T PF13434_consen 189 AGKRVAVVGGGQSAAEIFLDLLRRGPEAKVTWISRSP 225 (341)
T ss_dssp --EEEEEE-SSHHHHHHHHHHHHH-TTEEEEEEESSS
T ss_pred CCCeEEEECCcHhHHHHHHHHHhCCCCcEEEEEECCC
Confidence 46899999999999999999999874 788887754
No 336
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=95.77 E-value=0.012 Score=59.45 Aligned_cols=35 Identities=34% Similarity=0.465 Sum_probs=32.9
Q ss_pred CcEEEECCChhHHHHHHHHHHcCCcEEEEccCCCC
Q 048009 18 WDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVI 52 (531)
Q Consensus 18 ~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~ 52 (531)
.+|+|||||..|+.+|..|++.|.+|+|+|+.+.+
T Consensus 158 ~~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~~~ 192 (438)
T PRK07251 158 ERLGIIGGGNIGLEFAGLYNKLGSKVTVLDAASTI 192 (438)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCcc
Confidence 57999999999999999999999999999998765
No 337
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=95.63 E-value=0.013 Score=59.79 Aligned_cols=35 Identities=37% Similarity=0.528 Sum_probs=32.7
Q ss_pred CcEEEECCChhHHHHHHHHHHcCCcEEEEccCCCC
Q 048009 18 WDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVI 52 (531)
Q Consensus 18 ~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~ 52 (531)
.+|+|||||.+|+-+|..|++.|.+|+|+|+.+.+
T Consensus 181 ~~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~~~i 215 (472)
T PRK05976 181 KSLVIVGGGVIGLEWASMLADFGVEVTVVEAADRI 215 (472)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCeEEEEEecCcc
Confidence 68999999999999999999999999999998753
No 338
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.62 E-value=0.015 Score=55.03 Aligned_cols=33 Identities=24% Similarity=0.251 Sum_probs=31.0
Q ss_pred CcEEEECCChhHHHHHHHHHHcCCcEEEEccCC
Q 048009 18 WDALVIGGGHNGLTAAAYLARAGLSVAVLERRH 50 (531)
Q Consensus 18 ~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~ 50 (531)
.+|+|||+|..|.+.|..|+++|++|+++|.++
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~ 36 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISD 36 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCH
Confidence 579999999999999999999999999999864
No 339
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=95.58 E-value=0.095 Score=58.52 Aligned_cols=47 Identities=26% Similarity=0.294 Sum_probs=35.2
Q ss_pred HHHcCcEEEcCcceeEEEecCCCceeEEEeC----CCcEEEcCeEEecCChHh
Q 048009 247 AREAGAHIVTRAEVSQLMINDSGRVNGVQLA----DGAQVHSSIVLSNATPYK 295 (531)
Q Consensus 247 ~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~----~g~~~~ad~VV~aa~~~~ 295 (531)
++++|++|++++.|++|..+ +++.+|++. +++++.+|.|+++.|...
T Consensus 361 L~~~GV~i~~~~~v~~i~g~--~~v~~V~l~~~~g~~~~i~~D~V~va~G~~P 411 (985)
T TIGR01372 361 ARELGIEVLTGHVVAATEGG--KRVSGVAVARNGGAGQRLEADALAVSGGWTP 411 (985)
T ss_pred HHHcCCEEEcCCeEEEEecC--CcEEEEEEEecCCceEEEECCEEEEcCCcCc
Confidence 45778999999999999754 445556654 456799999999877543
No 340
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.58 E-value=0.018 Score=54.80 Aligned_cols=34 Identities=24% Similarity=0.145 Sum_probs=31.6
Q ss_pred CCcEEEECCChhHHHHHHHHHHcCCcEEEEccCC
Q 048009 17 KWDALVIGGGHNGLTAAAYLARAGLSVAVLERRH 50 (531)
Q Consensus 17 ~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~ 50 (531)
-.+|+|||+|..|..-|..++.+|++|+++|.++
T Consensus 7 i~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~ 40 (321)
T PRK07066 7 IKTFAAIGSGVIGSGWVARALAHGLDVVAWDPAP 40 (321)
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence 3579999999999999999999999999999975
No 341
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=95.56 E-value=0.015 Score=52.44 Aligned_cols=34 Identities=26% Similarity=0.497 Sum_probs=31.8
Q ss_pred CcEEEECCChhHHHHHHHHHHcCCcEEEEccCCC
Q 048009 18 WDALVIGGGHNGLTAAAYLARAGLSVAVLERRHV 51 (531)
Q Consensus 18 ~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~ 51 (531)
++++|||+|-.|.+.|..|.+.|++|+++|+++.
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~ 34 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEGHNVVLIDRDEE 34 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCCCceEEEEcCHH
Confidence 4799999999999999999999999999999864
No 342
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=95.43 E-value=0.018 Score=58.63 Aligned_cols=36 Identities=33% Similarity=0.446 Sum_probs=33.1
Q ss_pred CCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCCC
Q 048009 17 KWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVI 52 (531)
Q Consensus 17 ~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~ 52 (531)
..+|+|||||..|+.+|..|++.|.+|+|+|+.+.+
T Consensus 170 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~ 205 (461)
T TIGR01350 170 PESLVIIGGGVIGIEFASIFASLGSKVTVIEMLDRI 205 (461)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCCC
Confidence 368999999999999999999999999999998754
No 343
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=95.34 E-value=0.02 Score=58.36 Aligned_cols=35 Identities=37% Similarity=0.530 Sum_probs=32.6
Q ss_pred CcEEEECCChhHHHHHHHHHHcCCcEEEEccCCCC
Q 048009 18 WDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVI 52 (531)
Q Consensus 18 ~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~ 52 (531)
.+|+|||+|..|+-+|..|++.|.+|+|+|+.+++
T Consensus 167 ~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~ 201 (463)
T TIGR02053 167 ESLAVIGGGAIGVELAQAFARLGSEVTILQRSDRL 201 (463)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcC
Confidence 68999999999999999999999999999998653
No 344
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.34 E-value=0.017 Score=54.57 Aligned_cols=34 Identities=21% Similarity=0.327 Sum_probs=31.2
Q ss_pred CcEEEECCChhHHHHHHHHHHcCCcEEEEccCCC
Q 048009 18 WDALVIGGGHNGLTAAAYLARAGLSVAVLERRHV 51 (531)
Q Consensus 18 ~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~ 51 (531)
.+|+|||+|..|...|..|+++|++|+++|+++.
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~ 35 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQE 35 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhCCCcEEEEeCCHH
Confidence 3699999999999999999999999999999753
No 345
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=95.34 E-value=0.018 Score=57.26 Aligned_cols=35 Identities=29% Similarity=0.156 Sum_probs=32.3
Q ss_pred CCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCC
Q 048009 17 KWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHV 51 (531)
Q Consensus 17 ~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~ 51 (531)
..+|.|||.|..|++.|..|+++|++|+++++++.
T Consensus 3 ~~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~~ 37 (415)
T PRK11064 3 FETISVIGLGYIGLPTAAAFASRQKQVIGVDINQH 37 (415)
T ss_pred ccEEEEECcchhhHHHHHHHHhCCCEEEEEeCCHH
Confidence 46899999999999999999999999999998754
No 346
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.32 E-value=0.02 Score=54.26 Aligned_cols=34 Identities=29% Similarity=0.216 Sum_probs=31.4
Q ss_pred CCcEEEECCChhHHHHHHHHHHcCCcEEEEccCC
Q 048009 17 KWDALVIGGGHNGLTAAAYLARAGLSVAVLERRH 50 (531)
Q Consensus 17 ~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~ 50 (531)
..+|+|||+|..|...|..|+++|++|+++|+++
T Consensus 4 ~~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~ 37 (292)
T PRK07530 4 IKKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSA 37 (292)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCH
Confidence 3579999999999999999999999999999864
No 347
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=95.32 E-value=0.024 Score=47.69 Aligned_cols=31 Identities=42% Similarity=0.550 Sum_probs=29.4
Q ss_pred EEEECCChhHHHHHHHHHHcCCcEEEEccCC
Q 048009 20 ALVIGGGHNGLTAAAYLARAGLSVAVLERRH 50 (531)
Q Consensus 20 vvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~ 50 (531)
|+|||+|..|+..|+.|++.|++|+++-+..
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~ 31 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP 31 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEEEESHH
T ss_pred CEEECcCHHHHHHHHHHHHCCCceEEEEccc
Confidence 6899999999999999999999999999965
No 348
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=95.24 E-value=0.023 Score=57.53 Aligned_cols=51 Identities=6% Similarity=-0.013 Sum_probs=39.1
Q ss_pred HHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCCC-cEEEcCeEEecCChHh
Q 048009 244 GSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADG-AQVHSSIVLSNATPYK 295 (531)
Q Consensus 244 ~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g-~~~~ad~VV~aa~~~~ 295 (531)
.+.++++|+++++++.|++|..++ +....|++.+| +.+.+|.||+++|...
T Consensus 214 ~~~l~~~gI~i~~~~~v~~i~~~~-~~~~~v~~~~g~~~i~~D~vi~a~G~~p 265 (450)
T TIGR01421 214 TEEYEKEGINVHKLSKPVKVEKTV-EGKLVIHFEDGKSIDDVDELIWAIGRKP 265 (450)
T ss_pred HHHHHHcCCEEEcCCEEEEEEEeC-CceEEEEECCCcEEEEcCEEEEeeCCCc
Confidence 444667899999999999998754 33234777777 5699999999988654
No 349
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=95.21 E-value=0.024 Score=57.80 Aligned_cols=35 Identities=34% Similarity=0.438 Sum_probs=32.8
Q ss_pred CcEEEECCChhHHHHHHHHHHcCCcEEEEccCCCC
Q 048009 18 WDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVI 52 (531)
Q Consensus 18 ~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~ 52 (531)
.+|+|||||..|+-.|..|++.|.+|+|+|+.+++
T Consensus 175 ~~vvIiGgG~iG~E~A~~l~~~G~~Vtlv~~~~~i 209 (471)
T PRK06467 175 KRLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFDQV 209 (471)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCCEEEEecCCCC
Confidence 58999999999999999999999999999998764
No 350
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=95.18 E-value=0.029 Score=48.19 Aligned_cols=35 Identities=29% Similarity=0.322 Sum_probs=30.2
Q ss_pred CCCcEEEECCChhHHHHHHHHHHcCCcEEEEccCC
Q 048009 16 KKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRH 50 (531)
Q Consensus 16 ~~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~ 50 (531)
+..+|+|+|+|.+|+.||..|...|.+|+++|.+.
T Consensus 19 ~p~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~ 53 (168)
T PF01262_consen 19 PPAKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERP 53 (168)
T ss_dssp -T-EEEEESTSHHHHHHHHHHHHTT-EEEEEESSH
T ss_pred CCeEEEEECCCHHHHHHHHHHhHCCCEEEeccCCH
Confidence 35899999999999999999999999999999864
No 351
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.18 E-value=0.027 Score=57.22 Aligned_cols=34 Identities=29% Similarity=0.551 Sum_probs=32.0
Q ss_pred CCcEEEECCChhHHHHHHHHHHcCCcEEEEccCC
Q 048009 17 KWDALVIGGGHNGLTAAAYLARAGLSVAVLERRH 50 (531)
Q Consensus 17 ~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~ 50 (531)
..+|+|||+|..|+++|..|+++|++|+++|+..
T Consensus 5 ~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~ 38 (450)
T PRK14106 5 GKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKE 38 (450)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 5789999999999999999999999999999975
No 352
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=95.17 E-value=0.025 Score=57.47 Aligned_cols=35 Identities=29% Similarity=0.450 Sum_probs=32.4
Q ss_pred CcEEEECCChhHHHHHHHHHHcCCcEEEEccCCCC
Q 048009 18 WDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVI 52 (531)
Q Consensus 18 ~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~ 52 (531)
.+++|||||..|+-+|..|++.|.+|+|+|+.+++
T Consensus 171 ~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~l 205 (458)
T PRK06912 171 SSLLIVGGGVIGCEFASIYSRLGTKVTIVEMAPQL 205 (458)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCc
Confidence 58999999999999999999999999999998753
No 353
>PRK07846 mycothione reductase; Reviewed
Probab=95.17 E-value=0.024 Score=57.33 Aligned_cols=36 Identities=22% Similarity=0.374 Sum_probs=33.0
Q ss_pred CCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCCC
Q 048009 17 KWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVI 52 (531)
Q Consensus 17 ~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~ 52 (531)
..+|+|||||..|+-.|..|++.|.+|+|+|+.+++
T Consensus 166 ~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~l 201 (451)
T PRK07846 166 PESLVIVGGGFIAAEFAHVFSALGVRVTVVNRSGRL 201 (451)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcc
Confidence 368999999999999999999999999999997753
No 354
>TIGR01816 sdhA_forward succinate dehydrogenase, flavoprotein subunit, E. coli/mitochondrial subgroup. Succinate dehydrogenase and fumarate reductase are homologous enzymes reversible in principle but favored under different circumstances. This model represents a narrowly defined clade of the succinate dehydrogenase flavoprotein subunit as found in mitochondria, in Rickettsia, in E. coli and other Proteobacteria, and in a few other lineages. However, this model excludes all known fumarate reductases. It also excludes putative succinate dehydrogenases that appear to diverged before the split between E. coli succinate dehydrogenase and fumarate reductase.
Probab=95.14 E-value=0.067 Score=55.79 Aligned_cols=58 Identities=16% Similarity=0.237 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEe---CCCc--EEEcCeEEecCChHh
Q 048009 237 GSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQL---ADGA--QVHSSIVLSNATPYK 295 (531)
Q Consensus 237 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~---~~g~--~~~ad~VV~aa~~~~ 295 (531)
..|...|.+.+++.|++|+.++.|+++..++ |+|.||.. .+|+ .+.|+.||+|+|...
T Consensus 119 ~~i~~~L~~~~~~~gi~i~~~~~~~~Li~~~-g~v~Ga~~~~~~~g~~~~i~AkaVILATGG~~ 181 (565)
T TIGR01816 119 HAILHTLYQQNLKADTSFFNEYFALDLLMED-GECRGVIAYCLETGEIHRFRAKAVVLATGGYG 181 (565)
T ss_pred HHHHHHHHHHHHhCCCEEEeccEEEEEEeeC-CEEEEEEEEEcCCCcEEEEEeCeEEECCCCcc
Confidence 4789999999999999999999999999876 99999876 2564 578999999999876
No 355
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=95.10 E-value=0.028 Score=56.13 Aligned_cols=36 Identities=36% Similarity=0.507 Sum_probs=33.5
Q ss_pred CCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCCC
Q 048009 17 KWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVI 52 (531)
Q Consensus 17 ~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~ 52 (531)
..+++|||||..|+--|..+++.|.+|+|+|+.+++
T Consensus 173 P~~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~~~i 208 (454)
T COG1249 173 PKSLVIVGGGYIGLEFASVFAALGSKVTVVERGDRI 208 (454)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCC
Confidence 356999999999999999999999999999999874
No 356
>PRK06370 mercuric reductase; Validated
Probab=95.09 E-value=0.028 Score=57.32 Aligned_cols=36 Identities=36% Similarity=0.465 Sum_probs=33.4
Q ss_pred CcEEEECCChhHHHHHHHHHHcCCcEEEEccCCCCC
Q 048009 18 WDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIG 53 (531)
Q Consensus 18 ~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~G 53 (531)
.+|+|||||..|+-+|..|++.|.+|+|+|+.+.+.
T Consensus 172 ~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l 207 (463)
T PRK06370 172 EHLVIIGGGYIGLEFAQMFRRFGSEVTVIERGPRLL 207 (463)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCCC
Confidence 689999999999999999999999999999987653
No 357
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=95.08 E-value=0.027 Score=57.44 Aligned_cols=35 Identities=34% Similarity=0.423 Sum_probs=32.6
Q ss_pred CcEEEECCChhHHHHHHHHHHcCCcEEEEccCCCC
Q 048009 18 WDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVI 52 (531)
Q Consensus 18 ~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~ 52 (531)
.+|+|||||..|+-+|..|++.|.+|+|+|+.+++
T Consensus 173 ~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~ 207 (462)
T PRK06416 173 KSLVVIGGGYIGVEFASAYASLGAEVTIVEALPRI 207 (462)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCc
Confidence 57999999999999999999999999999998764
No 358
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=95.06 E-value=0.028 Score=57.23 Aligned_cols=36 Identities=33% Similarity=0.390 Sum_probs=33.0
Q ss_pred CCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCCC
Q 048009 17 KWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVI 52 (531)
Q Consensus 17 ~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~ 52 (531)
..+|+|||||..|+-.|..|++.|.+|+|+|+.+++
T Consensus 174 ~~~vvIIGgG~ig~E~A~~l~~~G~~Vtlie~~~~i 209 (466)
T PRK06115 174 PKHLVVIGAGVIGLELGSVWRRLGAQVTVVEYLDRI 209 (466)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCCC
Confidence 368999999999999999999999999999997754
No 359
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=95.01 E-value=0.029 Score=57.23 Aligned_cols=34 Identities=24% Similarity=0.321 Sum_probs=31.8
Q ss_pred CcEEEECCChhHHHHHHHHHHcCCcEEEEccCCC
Q 048009 18 WDALVIGGGHNGLTAAAYLARAGLSVAVLERRHV 51 (531)
Q Consensus 18 ~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~ 51 (531)
.+|+|||||..|+-+|..|++.|.+|+|+|+.++
T Consensus 173 ~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~~ 206 (466)
T PRK07818 173 KSIVIAGAGAIGMEFAYVLKNYGVDVTIVEFLDR 206 (466)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCeEEEEecCCC
Confidence 5899999999999999999999999999998764
No 360
>KOG2755 consensus Oxidoreductase [General function prediction only]
Probab=95.01 E-value=0.015 Score=51.73 Aligned_cols=33 Identities=24% Similarity=0.481 Sum_probs=28.0
Q ss_pred cEEEECCChhHHHHHHHHHHc--CCcEEEEccCCC
Q 048009 19 DALVIGGGHNGLTAAAYLARA--GLSVAVLERRHV 51 (531)
Q Consensus 19 dvvIIGaGiaGL~aA~~L~~~--G~~V~v~E~~~~ 51 (531)
+.+||||||||.+||-.|+.. ..+|+|+-+++.
T Consensus 1 kfivvgggiagvscaeqla~~~psa~illitass~ 35 (334)
T KOG2755|consen 1 KFIVVGGGIAGVSCAEQLAQLEPSAEILLITASSF 35 (334)
T ss_pred CeEEEcCccccccHHHHHHhhCCCCcEEEEeccHH
Confidence 468999999999999999986 467888887654
No 361
>PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=94.97 E-value=0.083 Score=55.15 Aligned_cols=59 Identities=15% Similarity=0.159 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEe---CCCc--EEEcCeEEecCChHh
Q 048009 237 GSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQL---ADGA--QVHSSIVLSNATPYK 295 (531)
Q Consensus 237 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~---~~g~--~~~ad~VV~aa~~~~ 295 (531)
..|...|.+.+++.|++|+.++.++++..+++|+|.||.. .+|+ .+.|+.||+|+|...
T Consensus 126 ~~i~~~L~~~~~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~ 189 (570)
T PRK05675 126 HALLHTLYQGNLKNGTTFLNEWYAVDLVKNQDGAVVGVIAICIETGETVYIKSKATVLATGGAG 189 (570)
T ss_pred HHHHHHHHHHHhccCCEEEECcEEEEEEEcCCCeEEEEEEEEcCCCcEEEEecCeEEECCCCcc
Confidence 4788999998989999999999999999864389999876 3565 578999999999876
No 362
>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=94.95 E-value=0.033 Score=48.38 Aligned_cols=41 Identities=20% Similarity=0.362 Sum_probs=34.9
Q ss_pred ccccccCCCCcEEEECCChhHHHHHHHHHHcCCcEEEEccCC
Q 048009 9 TTSALKEKKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRH 50 (531)
Q Consensus 9 ~~~~~~~~~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~ 50 (531)
++..+. +...|.|||||..|.-.|...+..|+.|.|++++.
T Consensus 4 ~s~~~~-~~~~V~ivGaG~MGSGIAQv~a~sg~~V~l~d~~~ 44 (298)
T KOG2304|consen 4 ASANMA-EIKNVAIVGAGQMGSGIAQVAATSGLNVWLVDANE 44 (298)
T ss_pred cccccc-cccceEEEcccccchhHHHHHHhcCCceEEecCCH
Confidence 333444 45789999999999999999999999999999975
No 363
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.91 E-value=0.032 Score=52.62 Aligned_cols=33 Identities=30% Similarity=0.303 Sum_probs=30.9
Q ss_pred CcEEEECCChhHHHHHHHHHHcCCcEEEEccCC
Q 048009 18 WDALVIGGGHNGLTAAAYLARAGLSVAVLERRH 50 (531)
Q Consensus 18 ~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~ 50 (531)
.+|+|||+|..|.+.|..|+++|++|+++|.++
T Consensus 4 ~kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~ 36 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCAVAGYDVVMVDISD 36 (282)
T ss_pred cEEEEEccCHHHHHHHHHHHHCCCceEEEeCCH
Confidence 479999999999999999999999999999864
No 364
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=94.87 E-value=0.035 Score=56.57 Aligned_cols=36 Identities=42% Similarity=0.556 Sum_probs=33.3
Q ss_pred CCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCCC
Q 048009 17 KWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVI 52 (531)
Q Consensus 17 ~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~ 52 (531)
..+|+|||+|..|+-.|..|++.|.+|+|+|+.+++
T Consensus 169 ~k~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~ 204 (460)
T PRK06292 169 PKSLAVIGGGVIGLELGQALSRLGVKVTVFERGDRI 204 (460)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCc
Confidence 368999999999999999999999999999998764
No 365
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=94.86 E-value=0.033 Score=56.77 Aligned_cols=37 Identities=22% Similarity=0.350 Sum_probs=33.8
Q ss_pred CCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCCCC
Q 048009 17 KWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIG 53 (531)
Q Consensus 17 ~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~G 53 (531)
..+|+|||||..|+-.|..|++.|.+|+|+|+++++.
T Consensus 175 ~~~v~IiGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l 211 (461)
T PRK05249 175 PRSLIIYGAGVIGCEYASIFAALGVKVTLINTRDRLL 211 (461)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcC
Confidence 3689999999999999999999999999999987653
No 366
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=94.81 E-value=0.033 Score=53.14 Aligned_cols=33 Identities=33% Similarity=0.428 Sum_probs=31.2
Q ss_pred CcEEEECCChhHHHHHHHHHHcCCcEEEEccCC
Q 048009 18 WDALVIGGGHNGLTAAAYLARAGLSVAVLERRH 50 (531)
Q Consensus 18 ~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~ 50 (531)
++|.|||.|-.||+.|..|++.||+|+.+|...
T Consensus 1 MkI~viGtGYVGLv~g~~lA~~GHeVv~vDid~ 33 (414)
T COG1004 1 MKITVIGTGYVGLVTGACLAELGHEVVCVDIDE 33 (414)
T ss_pred CceEEECCchHHHHHHHHHHHcCCeEEEEeCCH
Confidence 589999999999999999999999999999875
No 367
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=94.76 E-value=0.035 Score=53.06 Aligned_cols=33 Identities=33% Similarity=0.445 Sum_probs=30.4
Q ss_pred CcEEEECCChhHHHHHHHHHHcCCcEEEEccCC
Q 048009 18 WDALVIGGGHNGLTAAAYLARAGLSVAVLERRH 50 (531)
Q Consensus 18 ~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~ 50 (531)
++|+|||+|..|...|..|++.|++|+++.++.
T Consensus 1 m~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~~ 33 (304)
T PRK06522 1 MKIAILGAGAIGGLFGAALAQAGHDVTLVARRG 33 (304)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEECCh
Confidence 369999999999999999999999999999853
No 368
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=94.74 E-value=0.037 Score=52.44 Aligned_cols=33 Identities=27% Similarity=0.356 Sum_probs=31.0
Q ss_pred CcEEEECCChhHHHHHHHHHHcCCcEEEEccCC
Q 048009 18 WDALVIGGGHNGLTAAAYLARAGLSVAVLERRH 50 (531)
Q Consensus 18 ~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~ 50 (531)
.+|.|||+|..|...|..|+++|++|+++|+++
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~ 36 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSE 36 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcCCeEEEEeCCH
Confidence 469999999999999999999999999999965
No 369
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=94.69 E-value=0.039 Score=56.36 Aligned_cols=35 Identities=31% Similarity=0.386 Sum_probs=32.8
Q ss_pred CcEEEECCChhHHHHHHHHHHcCCcEEEEccCCCC
Q 048009 18 WDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVI 52 (531)
Q Consensus 18 ~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~ 52 (531)
.+|+|||+|..|+-+|..|++.|.+|+|+|+.+.+
T Consensus 184 ~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~ 218 (475)
T PRK06327 184 KKLAVIGAGVIGLELGSVWRRLGAEVTILEALPAF 218 (475)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCcc
Confidence 58999999999999999999999999999998764
No 370
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=94.67 E-value=0.039 Score=52.77 Aligned_cols=31 Identities=35% Similarity=0.398 Sum_probs=29.5
Q ss_pred CcEEEECCChhHHHHHHHHHHcCCcEEEEcc
Q 048009 18 WDALVIGGGHNGLTAAAYLARAGLSVAVLER 48 (531)
Q Consensus 18 ~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~ 48 (531)
++|+|||+|..|.+.|..|++.|++|+++.+
T Consensus 1 mkI~IiG~G~iG~~~a~~L~~~g~~V~~~~r 31 (305)
T PRK12921 1 MRIAVVGAGAVGGTFGGRLLEAGRDVTFLVR 31 (305)
T ss_pred CeEEEECCCHHHHHHHHHHHHCCCceEEEec
Confidence 3699999999999999999999999999988
No 371
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=94.64 E-value=0.046 Score=52.81 Aligned_cols=34 Identities=29% Similarity=0.401 Sum_probs=31.6
Q ss_pred CCcEEEECCChhHHHHHHHHHHcCCcEEEEccCC
Q 048009 17 KWDALVIGGGHNGLTAAAYLARAGLSVAVLERRH 50 (531)
Q Consensus 17 ~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~ 50 (531)
.++|.|||+|..|.+.|..|++.|++|++++++.
T Consensus 4 ~m~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~~ 37 (328)
T PRK14618 4 GMRVAVLGAGAWGTALAVLAASKGVPVRLWARRP 37 (328)
T ss_pred CCeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCH
Confidence 4589999999999999999999999999999964
No 372
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=94.61 E-value=0.042 Score=55.65 Aligned_cols=36 Identities=19% Similarity=0.336 Sum_probs=32.9
Q ss_pred CCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCCC
Q 048009 17 KWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVI 52 (531)
Q Consensus 17 ~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~ 52 (531)
..+++|||||..|+-.|..|++.|.+|+|+|+.+.+
T Consensus 169 ~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~l 204 (452)
T TIGR03452 169 PESLVIVGGGYIAAEFAHVFSALGTRVTIVNRSTKL 204 (452)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCcc
Confidence 368999999999999999999999999999997653
No 373
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=94.54 E-value=0.041 Score=53.54 Aligned_cols=33 Identities=30% Similarity=0.390 Sum_probs=30.8
Q ss_pred CcEEEECCChhHHHHHHHHHHcCCcEEEEccCC
Q 048009 18 WDALVIGGGHNGLTAAAYLARAGLSVAVLERRH 50 (531)
Q Consensus 18 ~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~ 50 (531)
++|.|||+|..|.+.|..|+++|++|++++++.
T Consensus 3 mkI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~~ 35 (341)
T PRK08229 3 ARICVLGAGSIGCYLGGRLAAAGADVTLIGRAR 35 (341)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCcEEEEecHH
Confidence 579999999999999999999999999999853
No 374
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=94.52 E-value=0.052 Score=51.87 Aligned_cols=34 Identities=29% Similarity=0.356 Sum_probs=31.9
Q ss_pred CCcEEEECCChhHHHHHHHHHHcCCcEEEEccCC
Q 048009 17 KWDALVIGGGHNGLTAAAYLARAGLSVAVLERRH 50 (531)
Q Consensus 17 ~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~ 50 (531)
.++|.|||+|..|.+.|..|+++|++|+++.++.
T Consensus 4 ~m~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~~ 37 (308)
T PRK14619 4 PKTIAILGAGAWGSTLAGLASANGHRVRVWSRRS 37 (308)
T ss_pred CCEEEEECccHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 4689999999999999999999999999999975
No 375
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=94.51 E-value=0.047 Score=52.03 Aligned_cols=34 Identities=21% Similarity=0.339 Sum_probs=30.6
Q ss_pred CcEEEECCChhHHHHHHHHHHcC--CcEEEEccCCC
Q 048009 18 WDALVIGGGHNGLTAAAYLARAG--LSVAVLERRHV 51 (531)
Q Consensus 18 ~dvvIIGaGiaGL~aA~~L~~~G--~~V~v~E~~~~ 51 (531)
++|+|||+|..|.++|+.|+.+| .+|.++|++..
T Consensus 1 mkI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~~ 36 (308)
T cd05292 1 MKVAIVGAGFVGSTTAYALLLRGLASEIVLVDINKA 36 (308)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCch
Confidence 37999999999999999999999 58999998753
No 376
>PRK04148 hypothetical protein; Provisional
Probab=94.49 E-value=0.04 Score=44.54 Aligned_cols=34 Identities=21% Similarity=0.254 Sum_probs=31.1
Q ss_pred CCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCC
Q 048009 17 KWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHV 51 (531)
Q Consensus 17 ~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~ 51 (531)
..++++||.| .|.+.|..|++.|++|+.+|.++.
T Consensus 17 ~~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~ 50 (134)
T PRK04148 17 NKKIVELGIG-FYFKVAKKLKESGFDVIVIDINEK 50 (134)
T ss_pred CCEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHH
Confidence 3679999999 999999999999999999999875
No 377
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=94.48 E-value=0.052 Score=51.75 Aligned_cols=34 Identities=35% Similarity=0.440 Sum_probs=31.4
Q ss_pred CCcEEEECCChhHHHHHHHHHHcCCcEEEEccCC
Q 048009 17 KWDALVIGGGHNGLTAAAYLARAGLSVAVLERRH 50 (531)
Q Consensus 17 ~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~ 50 (531)
.++|+|||+|..|...|..|++.|++|+++.|+.
T Consensus 2 ~m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~ 35 (305)
T PRK05708 2 SMTWHILGAGSLGSLWACRLARAGLPVRLILRDR 35 (305)
T ss_pred CceEEEECCCHHHHHHHHHHHhCCCCeEEEEech
Confidence 4689999999999999999999999999999963
No 378
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=94.44 E-value=0.055 Score=51.38 Aligned_cols=34 Identities=32% Similarity=0.328 Sum_probs=30.5
Q ss_pred CcEEEECCChhHHHHHHHHHHcCC-cEEEEccCCC
Q 048009 18 WDALVIGGGHNGLTAAAYLARAGL-SVAVLERRHV 51 (531)
Q Consensus 18 ~dvvIIGaGiaGL~aA~~L~~~G~-~V~v~E~~~~ 51 (531)
.+|+|||+|..|...|+.|+.+|+ +|+++|....
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi~~~ 36 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEKELADLVLLDVVEG 36 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCCC
Confidence 589999999999999999999887 8999998543
No 379
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=94.43 E-value=0.054 Score=46.26 Aligned_cols=34 Identities=35% Similarity=0.407 Sum_probs=29.2
Q ss_pred CCcEEEECCChhHHHHHHHHHHcCCcEEEEccCC
Q 048009 17 KWDALVIGGGHNGLTAAAYLARAGLSVAVLERRH 50 (531)
Q Consensus 17 ~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~ 50 (531)
+.+|.|||-|..|...|..|.++|++|.++++++
T Consensus 1 m~~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~~ 34 (163)
T PF03446_consen 1 MMKIGFIGLGNMGSAMARNLAKAGYEVTVYDRSP 34 (163)
T ss_dssp -BEEEEE--SHHHHHHHHHHHHTTTEEEEEESSH
T ss_pred CCEEEEEchHHHHHHHHHHHHhcCCeEEeeccch
Confidence 3689999999999999999999999999999874
No 380
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=94.43 E-value=0.041 Score=54.94 Aligned_cols=33 Identities=36% Similarity=0.367 Sum_probs=31.1
Q ss_pred cEEEECCChhHHHHHHHHHHcCCcEEEEccCCC
Q 048009 19 DALVIGGGHNGLTAAAYLARAGLSVAVLERRHV 51 (531)
Q Consensus 19 dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~ 51 (531)
+|.|||.|..|+..|..|+++|++|++++++..
T Consensus 2 kI~vIGlG~~G~~lA~~La~~G~~V~~~d~~~~ 34 (411)
T TIGR03026 2 KIAVIGLGYVGLPLAALLADLGHEVTGVDIDQE 34 (411)
T ss_pred EEEEECCCchhHHHHHHHHhcCCeEEEEECCHH
Confidence 699999999999999999999999999999754
No 381
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=94.35 E-value=0.055 Score=55.09 Aligned_cols=36 Identities=22% Similarity=0.356 Sum_probs=33.1
Q ss_pred CcEEEECCChhHHHHHHHHHHcCCcEEEEccCCCCC
Q 048009 18 WDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIG 53 (531)
Q Consensus 18 ~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~G 53 (531)
.+++|||+|..|+-.|..|++.|.+|+|+|+.+++.
T Consensus 178 ~~vvVIGgG~ig~E~A~~l~~~g~~Vtli~~~~~~l 213 (466)
T PRK07845 178 EHLIVVGSGVTGAEFASAYTELGVKVTLVSSRDRVL 213 (466)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcCC
Confidence 579999999999999999999999999999987654
No 382
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=94.23 E-value=0.089 Score=43.21 Aligned_cols=35 Identities=34% Similarity=0.443 Sum_probs=31.6
Q ss_pred CCCcEEEECCChhHHHHHHHHHHcCCc-EEEEccCC
Q 048009 16 KKWDALVIGGGHNGLTAAAYLARAGLS-VAVLERRH 50 (531)
Q Consensus 16 ~~~dvvIIGaGiaGL~aA~~L~~~G~~-V~v~E~~~ 50 (531)
...+|+|||+|-+|-+++..|++.|.+ |+|+-|+.
T Consensus 11 ~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~ 46 (135)
T PF01488_consen 11 KGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTP 46 (135)
T ss_dssp TTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSH
T ss_pred CCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCH
Confidence 358899999999999999999999977 99999863
No 383
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=94.21 E-value=0.056 Score=56.93 Aligned_cols=35 Identities=20% Similarity=0.152 Sum_probs=32.7
Q ss_pred CcEEEECCChhHHHHHHHHHHcCCcEEEEccCCCC
Q 048009 18 WDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVI 52 (531)
Q Consensus 18 ~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~ 52 (531)
.+|+|||||..|+-.|..|++.|.+|+|+|+.+++
T Consensus 313 k~VvIVGgG~iGvE~A~~l~~~G~eVTLIe~~~~l 347 (659)
T PTZ00153 313 NYMGIVGMGIIGLEFMDIYTALGSEVVSFEYSPQL 347 (659)
T ss_pred CceEEECCCHHHHHHHHHHHhCCCeEEEEeccCcc
Confidence 57999999999999999999999999999998764
No 384
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=94.15 E-value=0.077 Score=45.22 Aligned_cols=34 Identities=24% Similarity=0.287 Sum_probs=30.6
Q ss_pred CCCcEEEECCCh-hHHHHHHHHHHcCCcEEEEccC
Q 048009 16 KKWDALVIGGGH-NGLTAAAYLARAGLSVAVLERR 49 (531)
Q Consensus 16 ~~~dvvIIGaGi-aGL~aA~~L~~~G~~V~v~E~~ 49 (531)
...+|+|||+|- .|..+|..|.++|.+|+|+.++
T Consensus 43 ~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~ 77 (168)
T cd01080 43 AGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSK 77 (168)
T ss_pred CCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECC
Confidence 358999999995 6999999999999999999985
No 385
>PTZ00058 glutathione reductase; Provisional
Probab=94.15 E-value=0.057 Score=55.92 Aligned_cols=35 Identities=14% Similarity=0.152 Sum_probs=32.5
Q ss_pred CCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCC
Q 048009 17 KWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHV 51 (531)
Q Consensus 17 ~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~ 51 (531)
..+|+|||||..|+-.|..|++.|.+|+|+|+.++
T Consensus 237 pk~VvIIGgG~iGlE~A~~l~~~G~~Vtli~~~~~ 271 (561)
T PTZ00058 237 AKRIGIAGSGYIAVELINVVNRLGAESYIFARGNR 271 (561)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCcEEEEEeccc
Confidence 46899999999999999999999999999999765
No 386
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=94.13 E-value=0.06 Score=54.51 Aligned_cols=49 Identities=16% Similarity=0.278 Sum_probs=38.6
Q ss_pred HHHHHcCcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChHh
Q 048009 245 SAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYK 295 (531)
Q Consensus 245 ~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~~ 295 (531)
+.+++.|++++++++|++|..++ +.+ .|.+.+|+++.+|.||+++|...
T Consensus 215 ~~l~~~gV~i~~~~~v~~i~~~~-~~~-~v~~~~g~~i~~D~viva~G~~p 263 (446)
T TIGR01424 215 RNMEGRGIRIHPQTSLTSITKTD-DGL-KVTLSHGEEIVADVVLFATGRSP 263 (446)
T ss_pred HHHHHCCCEEEeCCEEEEEEEcC-CeE-EEEEcCCcEeecCEEEEeeCCCc
Confidence 34567899999999999998755 333 36777888899999999988554
No 387
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=94.07 E-value=0.064 Score=50.92 Aligned_cols=33 Identities=30% Similarity=0.368 Sum_probs=30.9
Q ss_pred CcEEEECCChhHHHHHHHHHHcCCcEEEEccCC
Q 048009 18 WDALVIGGGHNGLTAAAYLARAGLSVAVLERRH 50 (531)
Q Consensus 18 ~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~ 50 (531)
.+|.|||+|..|...|..|++.|++|+++|+++
T Consensus 5 ~~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~ 37 (295)
T PLN02545 5 KKVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDP 37 (295)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCH
Confidence 469999999999999999999999999999865
No 388
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=94.03 E-value=0.068 Score=51.62 Aligned_cols=33 Identities=33% Similarity=0.438 Sum_probs=31.0
Q ss_pred CcEEEECCChhHHHHHHHHHHcCCcEEEEccCC
Q 048009 18 WDALVIGGGHNGLTAAAYLARAGLSVAVLERRH 50 (531)
Q Consensus 18 ~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~ 50 (531)
++|.|||+|..|...|..|++.|++|+++++++
T Consensus 2 mkI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~ 34 (325)
T PRK00094 2 MKIAVLGAGSWGTALAIVLARNGHDVTLWARDP 34 (325)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEECCH
Confidence 479999999999999999999999999999964
No 389
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=93.95 E-value=0.072 Score=51.05 Aligned_cols=33 Identities=33% Similarity=0.504 Sum_probs=30.8
Q ss_pred CcEEEECCChhHHHHHHHHHHcCCcEEEEccCC
Q 048009 18 WDALVIGGGHNGLTAAAYLARAGLSVAVLERRH 50 (531)
Q Consensus 18 ~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~ 50 (531)
.+|.|||+|..|.+.|..|++.|++|++++++.
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~ 37 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFARKGLQVVLIDVME 37 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence 579999999999999999999999999999864
No 390
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=93.94 E-value=0.071 Score=54.49 Aligned_cols=35 Identities=31% Similarity=0.324 Sum_probs=32.2
Q ss_pred CCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCC
Q 048009 17 KWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHV 51 (531)
Q Consensus 17 ~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~ 51 (531)
-.+|.|||+|..|..-|..|+++|++|+|+|+++.
T Consensus 7 i~~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~e 41 (507)
T PRK08268 7 IATVAVIGAGAMGAGIAQVAAQAGHTVLLYDARAG 41 (507)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence 35699999999999999999999999999999764
No 391
>PLN02507 glutathione reductase
Probab=93.86 E-value=0.072 Score=54.68 Aligned_cols=35 Identities=26% Similarity=0.363 Sum_probs=32.4
Q ss_pred CcEEEECCChhHHHHHHHHHHcCCcEEEEccCCCC
Q 048009 18 WDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVI 52 (531)
Q Consensus 18 ~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~ 52 (531)
.+|+|||||..|+-.|..|++.|.+|+|+|+.+++
T Consensus 204 k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~~ 238 (499)
T PLN02507 204 KRAVVLGGGYIAVEFASIWRGMGATVDLFFRKELP 238 (499)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCeEEEEEecCCc
Confidence 58999999999999999999999999999997753
No 392
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=93.85 E-value=0.076 Score=53.73 Aligned_cols=49 Identities=16% Similarity=0.268 Sum_probs=37.9
Q ss_pred HHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChHh
Q 048009 244 GSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYK 295 (531)
Q Consensus 244 ~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~~ 295 (531)
.+.++++|++++++++|++|..++ +.+ .|.+.+++ +.+|.||+++|...
T Consensus 206 ~~~l~~~gV~v~~~~~v~~i~~~~-~~v-~v~~~~g~-i~~D~vl~a~G~~p 254 (441)
T PRK08010 206 ATILRDQGVDIILNAHVERISHHE-NQV-QVHSEHAQ-LAVDALLIASGRQP 254 (441)
T ss_pred HHHHHhCCCEEEeCCEEEEEEEcC-CEE-EEEEcCCe-EEeCEEEEeecCCc
Confidence 445678899999999999998765 544 35555664 89999999988665
No 393
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=93.85 E-value=0.061 Score=54.85 Aligned_cols=34 Identities=32% Similarity=0.331 Sum_probs=31.6
Q ss_pred CcEEEECCChhHHHHHHHHHHcCCcEEEEccCCC
Q 048009 18 WDALVIGGGHNGLTAAAYLARAGLSVAVLERRHV 51 (531)
Q Consensus 18 ~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~ 51 (531)
.+|.|||+|..|...|..|+++|++|+|+|+++.
T Consensus 6 ~kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~e 39 (503)
T TIGR02279 6 VTVAVIGAGAMGAGIAQVAASAGHQVLLYDIRAE 39 (503)
T ss_pred cEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence 5699999999999999999999999999999754
No 394
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=93.83 E-value=0.11 Score=46.08 Aligned_cols=34 Identities=32% Similarity=0.502 Sum_probs=31.3
Q ss_pred CCcEEEECCChhHHHHHHHHHHcCCcEEEEccCC
Q 048009 17 KWDALVIGGGHNGLTAAAYLARAGLSVAVLERRH 50 (531)
Q Consensus 17 ~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~ 50 (531)
..+|+|||||-.|+..+..|.+.|.+|+|+....
T Consensus 9 gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~ 42 (205)
T TIGR01470 9 GRAVLVVGGGDVALRKARLLLKAGAQLRVIAEEL 42 (205)
T ss_pred CCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCC
Confidence 4689999999999999999999999999998753
No 395
>PRK06116 glutathione reductase; Validated
Probab=93.76 E-value=0.079 Score=53.78 Aligned_cols=36 Identities=19% Similarity=0.190 Sum_probs=32.9
Q ss_pred CCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCCC
Q 048009 17 KWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVI 52 (531)
Q Consensus 17 ~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~ 52 (531)
..+|+|||+|..|+-.|..|++.|.+|+++++.+.+
T Consensus 167 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~ 202 (450)
T PRK06116 167 PKRVAVVGAGYIAVEFAGVLNGLGSETHLFVRGDAP 202 (450)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCC
Confidence 368999999999999999999999999999997754
No 396
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=93.66 E-value=0.11 Score=45.90 Aligned_cols=34 Identities=26% Similarity=0.359 Sum_probs=31.5
Q ss_pred CCCcEEEECCChhHHHHHHHHHHcCC-cEEEEccC
Q 048009 16 KKWDALVIGGGHNGLTAAAYLARAGL-SVAVLERR 49 (531)
Q Consensus 16 ~~~dvvIIGaGiaGL~aA~~L~~~G~-~V~v~E~~ 49 (531)
...+|+|||+|-.|..+|..|++.|. +++|+|..
T Consensus 20 ~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D 54 (200)
T TIGR02354 20 EQATVAICGLGGLGSNVAINLARAGIGKLILVDFD 54 (200)
T ss_pred hCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 46899999999999999999999998 59999996
No 397
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=93.65 E-value=0.092 Score=50.88 Aligned_cols=34 Identities=35% Similarity=0.458 Sum_probs=31.5
Q ss_pred CCcEEEECCChhHHHHHHHHHHcC-CcEEEEccCC
Q 048009 17 KWDALVIGGGHNGLTAAAYLARAG-LSVAVLERRH 50 (531)
Q Consensus 17 ~~dvvIIGaGiaGL~aA~~L~~~G-~~V~v~E~~~ 50 (531)
+.+|+|||+|-.|.++|+.|+++| .+|+|.+|+.
T Consensus 1 m~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~ 35 (389)
T COG1748 1 MMKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSK 35 (389)
T ss_pred CCcEEEECCchhHHHHHHHHHhCCCceEEEEeCCH
Confidence 368999999999999999999999 8999999973
No 398
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=93.65 E-value=0.071 Score=55.57 Aligned_cols=36 Identities=33% Similarity=0.504 Sum_probs=33.2
Q ss_pred CCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCCC
Q 048009 17 KWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVI 52 (531)
Q Consensus 17 ~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~ 52 (531)
..+|+|||||..|+-.|..|++.|.+|+|+++.+.+
T Consensus 143 g~~VvVIGgG~~g~E~A~~L~~~g~~Vtli~~~~~~ 178 (555)
T TIGR03143 143 GMDVFVIGGGFAAAEEAVFLTRYASKVTVIVREPDF 178 (555)
T ss_pred CCEEEEECCCHHHHHHHHHHHccCCEEEEEEeCCcc
Confidence 468999999999999999999999999999998764
No 399
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=93.64 E-value=0.084 Score=50.96 Aligned_cols=32 Identities=28% Similarity=0.430 Sum_probs=30.2
Q ss_pred cEEEECCChhHHHHHHHHHHcCCcEEEEccCC
Q 048009 19 DALVIGGGHNGLTAAAYLARAGLSVAVLERRH 50 (531)
Q Consensus 19 dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~ 50 (531)
+|.|||+|..|.+-|..|++.|++|+++.++.
T Consensus 2 kI~IiGaGa~G~ala~~L~~~g~~V~l~~r~~ 33 (326)
T PRK14620 2 KISILGAGSFGTAIAIALSSKKISVNLWGRNH 33 (326)
T ss_pred EEEEECcCHHHHHHHHHHHHCCCeEEEEecCH
Confidence 69999999999999999999999999999854
No 400
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=93.61 E-value=0.12 Score=45.81 Aligned_cols=34 Identities=21% Similarity=0.354 Sum_probs=31.1
Q ss_pred CCCcEEEECCChhHHHHHHHHHHcCCcEEEEccC
Q 048009 16 KKWDALVIGGGHNGLTAAAYLARAGLSVAVLERR 49 (531)
Q Consensus 16 ~~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~ 49 (531)
...+|+|||||-.|...|..|.+.|.+|+|+++.
T Consensus 9 ~~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~ 42 (202)
T PRK06718 9 SNKRVVIVGGGKVAGRRAITLLKYGAHIVVISPE 42 (202)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEcCC
Confidence 4579999999999999999999999999999863
No 401
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=93.56 E-value=0.09 Score=52.04 Aligned_cols=36 Identities=36% Similarity=0.517 Sum_probs=33.8
Q ss_pred CCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCCC
Q 048009 17 KWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVI 52 (531)
Q Consensus 17 ~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~ 52 (531)
..+|+|+|-|.+|++||..|.++|.+|+++|.++..
T Consensus 7 ~~kv~V~GLG~sG~a~a~~L~~~G~~v~v~D~~~~~ 42 (448)
T COG0771 7 GKKVLVLGLGKSGLAAARFLLKLGAEVTVSDDRPAP 42 (448)
T ss_pred CCEEEEEecccccHHHHHHHHHCCCeEEEEcCCCCc
Confidence 578999999999999999999999999999987765
No 402
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=93.56 E-value=0.098 Score=51.19 Aligned_cols=34 Identities=32% Similarity=0.435 Sum_probs=31.4
Q ss_pred CCcEEEECCChhHHHHHHHHHHcCCcEEEEccCC
Q 048009 17 KWDALVIGGGHNGLTAAAYLARAGLSVAVLERRH 50 (531)
Q Consensus 17 ~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~ 50 (531)
..+|+|||+|..|+.+|..|...|.+|++++++.
T Consensus 167 ~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~ 200 (370)
T TIGR00518 167 PGDVTIIGGGVVGTNAAKMANGLGATVTILDINI 200 (370)
T ss_pred CceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCH
Confidence 4679999999999999999999999999999864
No 403
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=93.49 E-value=0.086 Score=49.56 Aligned_cols=32 Identities=25% Similarity=0.236 Sum_probs=30.1
Q ss_pred cEEEECCChhHHHHHHHHHHcCCcEEEEccCC
Q 048009 19 DALVIGGGHNGLTAAAYLARAGLSVAVLERRH 50 (531)
Q Consensus 19 dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~ 50 (531)
+|.|||.|..|.+.|..|+++|++|+++++++
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~ 33 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRE 33 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHCCCEEEEEECCH
Confidence 69999999999999999999999999999864
No 404
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=93.42 E-value=0.083 Score=54.03 Aligned_cols=33 Identities=39% Similarity=0.441 Sum_probs=30.8
Q ss_pred CcEEEECCChhHHHHHHHHHHcCCcEEEEccCC
Q 048009 18 WDALVIGGGHNGLTAAAYLARAGLSVAVLERRH 50 (531)
Q Consensus 18 ~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~ 50 (531)
.+|.|||+|..|.+-|..|+++|++|+|+++++
T Consensus 5 ~kIavIG~G~MG~~iA~~la~~G~~V~v~D~~~ 37 (495)
T PRK07531 5 MKAACIGGGVIGGGWAARFLLAGIDVAVFDPHP 37 (495)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence 479999999999999999999999999999864
No 405
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=93.40 E-value=0.14 Score=43.27 Aligned_cols=33 Identities=27% Similarity=0.346 Sum_probs=30.2
Q ss_pred CCCCcEEEECCChhHHHHHHHHHHcCCcEEEEc
Q 048009 15 EKKWDALVIGGGHNGLTAAAYLARAGLSVAVLE 47 (531)
Q Consensus 15 ~~~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E 47 (531)
-...+|+|||||-.|..-|..|.+.|++|+|+.
T Consensus 11 l~~~~vlVvGGG~va~rka~~Ll~~ga~V~VIs 43 (157)
T PRK06719 11 LHNKVVVIIGGGKIAYRKASGLKDTGAFVTVVS 43 (157)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEc
Confidence 346789999999999999999999999999994
No 406
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=93.35 E-value=0.088 Score=54.41 Aligned_cols=35 Identities=40% Similarity=0.382 Sum_probs=32.1
Q ss_pred CCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCC
Q 048009 17 KWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHV 51 (531)
Q Consensus 17 ~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~ 51 (531)
..+|+|||||..|+-+|..|+..+.+|+|+++.+.
T Consensus 351 gk~VvVVGgG~~g~e~A~~L~~~~~~Vtlv~~~~~ 385 (517)
T PRK15317 351 GKRVAVIGGGNSGVEAAIDLAGIVKHVTVLEFAPE 385 (517)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCEEEEEEECcc
Confidence 35899999999999999999999999999998764
No 407
>PLN02546 glutathione reductase
Probab=93.35 E-value=0.096 Score=54.27 Aligned_cols=36 Identities=22% Similarity=0.272 Sum_probs=32.7
Q ss_pred CCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCCC
Q 048009 17 KWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVI 52 (531)
Q Consensus 17 ~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~ 52 (531)
..+|+|||||..|+-.|..|++.|.+|+|+|+.+.+
T Consensus 252 ~k~V~VIGgG~iGvE~A~~L~~~g~~Vtlv~~~~~i 287 (558)
T PLN02546 252 PEKIAIVGGGYIALEFAGIFNGLKSDVHVFIRQKKV 287 (558)
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCeEEEEEecccc
Confidence 368999999999999999999999999999997653
No 408
>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]
Probab=93.33 E-value=0.1 Score=49.79 Aligned_cols=63 Identities=16% Similarity=0.196 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChHhHHhhcCCC
Q 048009 238 SVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYKTFMDLVPG 303 (531)
Q Consensus 238 ~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~~~~~~ll~~ 303 (531)
-|.+.-.+.+++.|+.++.|..|+++.... +++. +.++||.++..|.||+|+|--. -..|...
T Consensus 394 yls~wt~ekir~~GV~V~pna~v~sv~~~~-~nl~-lkL~dG~~l~tD~vVvavG~eP-N~ela~~ 456 (659)
T KOG1346|consen 394 YLSQWTIEKIRKGGVDVRPNAKVESVRKCC-KNLV-LKLSDGSELRTDLVVVAVGEEP-NSELAEA 456 (659)
T ss_pred HHHHHHHHHHHhcCceeccchhhhhhhhhc-cceE-EEecCCCeeeeeeEEEEecCCC-chhhccc
Confidence 456666778899999999999999999877 6665 8999999999999999887443 2345443
No 409
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=93.32 E-value=0.099 Score=51.46 Aligned_cols=32 Identities=22% Similarity=0.288 Sum_probs=29.0
Q ss_pred cEEEECCChhHHHHHHHHHHcCCcEEEEccCCC
Q 048009 19 DALVIGGGHNGLTAAAYLARAGLSVAVLERRHV 51 (531)
Q Consensus 19 dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~ 51 (531)
+|.|||.|..|+..|..|+. |++|+++|.+..
T Consensus 2 kI~VIGlGyvGl~~A~~lA~-G~~VigvD~d~~ 33 (388)
T PRK15057 2 KITISGTGYVGLSNGLLIAQ-NHEVVALDILPS 33 (388)
T ss_pred EEEEECCCHHHHHHHHHHHh-CCcEEEEECCHH
Confidence 69999999999999988885 999999999754
No 410
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=93.21 E-value=0.075 Score=41.26 Aligned_cols=35 Identities=34% Similarity=0.427 Sum_probs=31.4
Q ss_pred CCCcEEEECCChhHHHHHHHHHHcCCcEEEEccCC
Q 048009 16 KKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRH 50 (531)
Q Consensus 16 ~~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~ 50 (531)
+..+|+|||||-.|..-+..|.+.|.+|+|+....
T Consensus 6 ~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~ 40 (103)
T PF13241_consen 6 KGKRVLVVGGGPVAARKARLLLEAGAKVTVISPEI 40 (103)
T ss_dssp TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESSE
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCch
Confidence 45789999999999999999999999999999873
No 411
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.20 E-value=0.13 Score=52.01 Aligned_cols=36 Identities=31% Similarity=0.415 Sum_probs=32.6
Q ss_pred CCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCCC
Q 048009 17 KWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVI 52 (531)
Q Consensus 17 ~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~ 52 (531)
..+|+|+|.|.+|+++|..|+++|++|+++|..+..
T Consensus 5 ~~~~~v~G~g~~G~~~a~~l~~~g~~v~~~d~~~~~ 40 (445)
T PRK04308 5 NKKILVAGLGGTGISMIAYLRKNGAEVAAYDAELKP 40 (445)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCc
Confidence 457999999999999999999999999999987653
No 412
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=93.13 E-value=0.1 Score=52.57 Aligned_cols=34 Identities=24% Similarity=0.208 Sum_probs=30.3
Q ss_pred CcEEEECCChhHHHHHHHHHHcC--CcEEEEccCCC
Q 048009 18 WDALVIGGGHNGLTAAAYLARAG--LSVAVLERRHV 51 (531)
Q Consensus 18 ~dvvIIGaGiaGL~aA~~L~~~G--~~V~v~E~~~~ 51 (531)
++|+|||+|-.|+..|..|+++| ++|+.+|.+..
T Consensus 2 m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~ 37 (473)
T PLN02353 2 VKICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVP 37 (473)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHH
Confidence 67999999999999999999985 78999998653
No 413
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=93.10 E-value=0.12 Score=46.57 Aligned_cols=33 Identities=30% Similarity=0.379 Sum_probs=29.4
Q ss_pred CcEEEEC-CChhHHHHHHHHHHcCCcEEEEccCC
Q 048009 18 WDALVIG-GGHNGLTAAAYLARAGLSVAVLERRH 50 (531)
Q Consensus 18 ~dvvIIG-aGiaGL~aA~~L~~~G~~V~v~E~~~ 50 (531)
++|.||| +|..|.+.|..|++.|++|+++.+++
T Consensus 1 MkI~IIGG~G~mG~ala~~L~~~G~~V~v~~r~~ 34 (219)
T TIGR01915 1 MKIAVLGGTGDQGKGLALRLAKAGNKIIIGSRDL 34 (219)
T ss_pred CEEEEEcCCCHHHHHHHHHHHhCCCEEEEEEcCH
Confidence 3699997 79999999999999999999997753
No 414
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=93.09 E-value=0.11 Score=50.81 Aligned_cols=33 Identities=27% Similarity=0.307 Sum_probs=30.1
Q ss_pred CcEEEECCChhHHHHHHHHHHcCCc-EEEEccCC
Q 048009 18 WDALVIGGGHNGLTAAAYLARAGLS-VAVLERRH 50 (531)
Q Consensus 18 ~dvvIIGaGiaGL~aA~~L~~~G~~-V~v~E~~~ 50 (531)
.+|+|||+|..|+-+|..|++.|.+ |+|+++.+
T Consensus 173 ~~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~~ 206 (352)
T PRK12770 173 KKVVVVGAGLTAVDAALEAVLLGAEKVYLAYRRT 206 (352)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCeEEEEeecc
Confidence 5799999999999999999999987 99999854
No 415
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=93.08 E-value=0.084 Score=48.49 Aligned_cols=34 Identities=29% Similarity=0.402 Sum_probs=31.8
Q ss_pred CCcEEEECCChhHHHHHHHHHHcCCcEEEEccCC
Q 048009 17 KWDALVIGGGHNGLTAAAYLARAGLSVAVLERRH 50 (531)
Q Consensus 17 ~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~ 50 (531)
.-+|+|||||+.|.-||....-.|-+|+|+|.+.
T Consensus 168 ~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~ 201 (371)
T COG0686 168 PAKVVVLGGGVVGTNAAKIAIGLGADVTILDLNI 201 (371)
T ss_pred CccEEEECCccccchHHHHHhccCCeeEEEecCH
Confidence 4789999999999999999999999999999973
No 416
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.06 E-value=0.11 Score=52.70 Aligned_cols=33 Identities=18% Similarity=0.416 Sum_probs=31.2
Q ss_pred CcEEEECCChhHHHHHHHHHHcCCcEEEEccCC
Q 048009 18 WDALVIGGGHNGLTAAAYLARAGLSVAVLERRH 50 (531)
Q Consensus 18 ~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~ 50 (531)
.+|.|+|.|.+|+++|..|.++|++|++.|+++
T Consensus 15 ~~i~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~ 47 (458)
T PRK01710 15 KKVAVVGIGVSNIPLIKFLVKLGAKVTAFDKKS 47 (458)
T ss_pred CeEEEEcccHHHHHHHHHHHHCCCEEEEECCCC
Confidence 579999999999999999999999999999875
No 417
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=93.02 E-value=0.13 Score=52.63 Aligned_cols=32 Identities=38% Similarity=0.543 Sum_probs=30.1
Q ss_pred CcEEEECCChhHHHHHHHHHHcCCcEEEEccC
Q 048009 18 WDALVIGGGHNGLTAAAYLARAGLSVAVLERR 49 (531)
Q Consensus 18 ~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~ 49 (531)
-+++|||||..|+-.|..|++.|.+|+|+++.
T Consensus 181 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~ 212 (484)
T TIGR01438 181 GKTLVVGASYVALECAGFLAGIGLDVTVMVRS 212 (484)
T ss_pred CCEEEECCCHHHHHHHHHHHHhCCcEEEEEec
Confidence 47999999999999999999999999999974
No 418
>PRK14694 putative mercuric reductase; Provisional
Probab=93.01 E-value=0.13 Score=52.49 Aligned_cols=32 Identities=41% Similarity=0.420 Sum_probs=30.2
Q ss_pred CcEEEECCChhHHHHHHHHHHcCCcEEEEccC
Q 048009 18 WDALVIGGGHNGLTAAAYLARAGLSVAVLERR 49 (531)
Q Consensus 18 ~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~ 49 (531)
.+|+|||+|..|+-.|..|++.|.+|+|+++.
T Consensus 179 ~~vvViG~G~~G~E~A~~l~~~g~~Vtlv~~~ 210 (468)
T PRK14694 179 ERLLVIGASVVALELAQAFARLGSRVTVLARS 210 (468)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEECC
Confidence 58999999999999999999999999999874
No 419
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=92.92 E-value=0.12 Score=52.63 Aligned_cols=37 Identities=24% Similarity=0.320 Sum_probs=31.2
Q ss_pred CCcEEEECCChhHHHHHHHHHH---cCCcEEEEccCCCCC
Q 048009 17 KWDALVIGGGHNGLTAAAYLAR---AGLSVAVLERRHVIG 53 (531)
Q Consensus 17 ~~dvvIIGaGiaGL~aA~~L~~---~G~~V~v~E~~~~~G 53 (531)
..+|+|||||..|+-.|..++. .|.+|+|+|+.+++.
T Consensus 187 ~~~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtli~~~~~il 226 (486)
T TIGR01423 187 PRRVLTVGGGFISVEFAGIFNAYKPRGGKVTLCYRNNMIL 226 (486)
T ss_pred CCeEEEECCCHHHHHHHHHHHHhccCCCeEEEEecCCccc
Confidence 3579999999999999977654 499999999988753
No 420
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=92.82 E-value=0.13 Score=49.01 Aligned_cols=35 Identities=31% Similarity=0.589 Sum_probs=31.8
Q ss_pred CCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCC
Q 048009 17 KWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHV 51 (531)
Q Consensus 17 ~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~ 51 (531)
..+|+|||+|..|+-+|..|++.+.+|+++++.+.
T Consensus 141 ~~~v~ViG~G~~~~e~a~~l~~~~~~V~~v~~~~~ 175 (300)
T TIGR01292 141 NKEVAVVGGGDSAIEEALYLTRIAKKVTLVHRRDK 175 (300)
T ss_pred CCEEEEECCChHHHHHHHHHHhhcCEEEEEEeCcc
Confidence 35899999999999999999999999999999653
No 421
>PTZ00052 thioredoxin reductase; Provisional
Probab=92.79 E-value=0.14 Score=52.64 Aligned_cols=32 Identities=31% Similarity=0.518 Sum_probs=30.1
Q ss_pred CcEEEECCChhHHHHHHHHHHcCCcEEEEccC
Q 048009 18 WDALVIGGGHNGLTAAAYLARAGLSVAVLERR 49 (531)
Q Consensus 18 ~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~ 49 (531)
.+++|||||..|+-.|..|++.|.+|+|++++
T Consensus 183 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~ 214 (499)
T PTZ00052 183 GKTLIVGASYIGLETAGFLNELGFDVTVAVRS 214 (499)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcC
Confidence 48999999999999999999999999999874
No 422
>PRK13748 putative mercuric reductase; Provisional
Probab=92.77 E-value=0.13 Score=53.89 Aligned_cols=32 Identities=34% Similarity=0.365 Sum_probs=30.4
Q ss_pred CcEEEECCChhHHHHHHHHHHcCCcEEEEccC
Q 048009 18 WDALVIGGGHNGLTAAAYLARAGLSVAVLERR 49 (531)
Q Consensus 18 ~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~ 49 (531)
.+|+|||||..|+-.|..|++.|.+|+|+++.
T Consensus 271 ~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~ 302 (561)
T PRK13748 271 ERLAVIGSSVVALELAQAFARLGSKVTILARS 302 (561)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCEEEEEecC
Confidence 58999999999999999999999999999984
No 423
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=92.73 E-value=0.18 Score=44.53 Aligned_cols=33 Identities=24% Similarity=0.216 Sum_probs=30.8
Q ss_pred CCcEEEECCChhHHHHHHHHHHcCCcEEEEccC
Q 048009 17 KWDALVIGGGHNGLTAAAYLARAGLSVAVLERR 49 (531)
Q Consensus 17 ~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~ 49 (531)
...|+|+|.|-.|..+|..|.+.|++|+++|++
T Consensus 28 gk~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~ 60 (200)
T cd01075 28 GKTVAVQGLGKVGYKLAEHLLEEGAKLIVADIN 60 (200)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 467999999999999999999999999999876
No 424
>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]
Probab=92.73 E-value=0.12 Score=47.66 Aligned_cols=37 Identities=38% Similarity=0.596 Sum_probs=32.1
Q ss_pred CCCCcEEEECCChhHHHHHHHHHHc-C-CcEEEEccCCC
Q 048009 15 EKKWDALVIGGGHNGLTAAAYLARA-G-LSVAVLERRHV 51 (531)
Q Consensus 15 ~~~~dvvIIGaGiaGL~aA~~L~~~-G-~~V~v~E~~~~ 51 (531)
.++++|+|||||.+|++.|..+.++ | -+|-|+|-...
T Consensus 37 ~~h~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIvep~e~ 75 (446)
T KOG3851|consen 37 RKHFKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVEPAED 75 (446)
T ss_pred ccceEEEEEcCCcchhHHHHHHHhhcCCCceEEecchhh
Confidence 4689999999999999999999976 5 47999998754
No 425
>PRK14727 putative mercuric reductase; Provisional
Probab=92.71 E-value=0.15 Score=52.12 Aligned_cols=32 Identities=31% Similarity=0.306 Sum_probs=30.2
Q ss_pred CcEEEECCChhHHHHHHHHHHcCCcEEEEccC
Q 048009 18 WDALVIGGGHNGLTAAAYLARAGLSVAVLERR 49 (531)
Q Consensus 18 ~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~ 49 (531)
.+|+|||+|..|+-.|..|++.|.+|+|+++.
T Consensus 189 k~vvVIGgG~iG~E~A~~l~~~G~~Vtlv~~~ 220 (479)
T PRK14727 189 ASLTVIGSSVVAAEIAQAYARLGSRVTILARS 220 (479)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCEEEEEEcC
Confidence 57999999999999999999999999999974
No 426
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=92.68 E-value=0.12 Score=52.35 Aligned_cols=36 Identities=31% Similarity=0.374 Sum_probs=32.6
Q ss_pred CCCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCC
Q 048009 16 KKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHV 51 (531)
Q Consensus 16 ~~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~ 51 (531)
+..+|+|||+|.+||.|+..+...|.+|+++|.++.
T Consensus 164 pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~ 199 (509)
T PRK09424 164 PPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPE 199 (509)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 357899999999999999999999999999999753
No 427
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=92.65 E-value=0.13 Score=48.84 Aligned_cols=32 Identities=28% Similarity=0.255 Sum_probs=30.1
Q ss_pred cEEEECCChhHHHHHHHHHHcCCcEEEEccCC
Q 048009 19 DALVIGGGHNGLTAAAYLARAGLSVAVLERRH 50 (531)
Q Consensus 19 dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~ 50 (531)
+|.|||.|..|...|..|++.|++|+++++++
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~G~~V~~~dr~~ 32 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKAGYQLHVTTIGP 32 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHCCCeEEEEcCCH
Confidence 58999999999999999999999999999874
No 428
>PRK06223 malate dehydrogenase; Reviewed
Probab=92.63 E-value=0.16 Score=48.48 Aligned_cols=34 Identities=29% Similarity=0.319 Sum_probs=30.7
Q ss_pred CcEEEECCChhHHHHHHHHHHcCC-cEEEEccCCC
Q 048009 18 WDALVIGGGHNGLTAAAYLARAGL-SVAVLERRHV 51 (531)
Q Consensus 18 ~dvvIIGaGiaGL~aA~~L~~~G~-~V~v~E~~~~ 51 (531)
.+|+|||+|..|.+.|..|+..|+ +|.++|.+..
T Consensus 3 ~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~~~ 37 (307)
T PRK06223 3 KKISIIGAGNVGATLAHLLALKELGDVVLFDIVEG 37 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEEECCCc
Confidence 689999999999999999999876 9999998653
No 429
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=92.53 E-value=0.16 Score=47.06 Aligned_cols=34 Identities=35% Similarity=0.353 Sum_probs=31.9
Q ss_pred CcEEEECCChhHHHHHHHHHHcCCcEEEEccCCC
Q 048009 18 WDALVIGGGHNGLTAAAYLARAGLSVAVLERRHV 51 (531)
Q Consensus 18 ~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~ 51 (531)
.+|.+||-|..|...|.+|.++||+|+|+++++.
T Consensus 1 ~kIafIGLG~MG~pmA~~L~~aG~~v~v~~r~~~ 34 (286)
T COG2084 1 MKIAFIGLGIMGSPMAANLLKAGHEVTVYNRTPE 34 (286)
T ss_pred CeEEEEcCchhhHHHHHHHHHCCCEEEEEeCChh
Confidence 4799999999999999999999999999999865
No 430
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=92.53 E-value=0.12 Score=55.40 Aligned_cols=34 Identities=26% Similarity=0.233 Sum_probs=31.6
Q ss_pred CcEEEECCChhHHHHHHHHHHcCCcEEEEccCCC
Q 048009 18 WDALVIGGGHNGLTAAAYLARAGLSVAVLERRHV 51 (531)
Q Consensus 18 ~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~ 51 (531)
.+|+|||||..|...|..++..|++|+++|.++.
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~ 347 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSASKGVPVIMKDINQK 347 (715)
T ss_pred ceEEEECCchhHHHHHHHHHhCCCeEEEEeCCHH
Confidence 5799999999999999999999999999999753
No 431
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.50 E-value=0.17 Score=51.36 Aligned_cols=34 Identities=29% Similarity=0.419 Sum_probs=31.1
Q ss_pred CCcEEEECCChhHHHHHHHHHHcCCcEEEEccCC
Q 048009 17 KWDALVIGGGHNGLTAAAYLARAGLSVAVLERRH 50 (531)
Q Consensus 17 ~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~ 50 (531)
...|+|+|+|-+|+++|..|+++|++|++.|++.
T Consensus 5 ~k~v~v~G~g~~G~s~a~~l~~~G~~V~~~d~~~ 38 (447)
T PRK02472 5 NKKVLVLGLAKSGYAAAKLLHKLGANVTVNDGKP 38 (447)
T ss_pred CCEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCC
Confidence 3569999999999999999999999999999765
No 432
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.38 E-value=0.15 Score=51.86 Aligned_cols=35 Identities=17% Similarity=0.002 Sum_probs=31.7
Q ss_pred CCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCC
Q 048009 17 KWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHV 51 (531)
Q Consensus 17 ~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~ 51 (531)
..+|+|+|.|.+|.+||..|.++|.+|++.|.++.
T Consensus 8 ~~~v~v~G~G~sG~~~~~~l~~~g~~v~~~d~~~~ 42 (468)
T PRK04690 8 GRRVALWGWGREGRAAYRALRAHLPAQALTLFCNA 42 (468)
T ss_pred CCEEEEEccchhhHHHHHHHHHcCCEEEEEcCCCc
Confidence 35799999999999999999999999999997543
No 433
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=92.29 E-value=0.21 Score=47.86 Aligned_cols=35 Identities=20% Similarity=0.263 Sum_probs=31.8
Q ss_pred CCcEEEECCChhHHHHHHHHHHcCC-cEEEEccCCC
Q 048009 17 KWDALVIGGGHNGLTAAAYLARAGL-SVAVLERRHV 51 (531)
Q Consensus 17 ~~dvvIIGaGiaGL~aA~~L~~~G~-~V~v~E~~~~ 51 (531)
..+|+|||+|..|.+.|+.|+..|+ +|.|+|.++.
T Consensus 6 ~~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~ 41 (321)
T PTZ00082 6 RRKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKN 41 (321)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCc
Confidence 4689999999999999999999995 8999998765
No 434
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=92.25 E-value=0.16 Score=54.43 Aligned_cols=34 Identities=24% Similarity=0.209 Sum_probs=31.7
Q ss_pred CCcEEEECCChhHHHHHHHHHHcCCcEEEEccCC
Q 048009 17 KWDALVIGGGHNGLTAAAYLARAGLSVAVLERRH 50 (531)
Q Consensus 17 ~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~ 50 (531)
-.+|+|||||..|...|+.++.+|++|+++|.+.
T Consensus 313 i~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~ 346 (714)
T TIGR02437 313 VKQAAVLGAGIMGGGIAYQSASKGTPIVMKDINQ 346 (714)
T ss_pred cceEEEECCchHHHHHHHHHHhCCCeEEEEeCCH
Confidence 4579999999999999999999999999999975
No 435
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=92.25 E-value=0.34 Score=47.60 Aligned_cols=53 Identities=21% Similarity=0.224 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHcCcEEEcCcceeEEEecCCCceeEEEeCCCcEEEcCeEEecCChHh
Q 048009 237 GSVSMAIGSAAREAGAHIVTRAEVSQLMINDSGRVNGVQLADGAQVHSSIVLSNATPYK 295 (531)
Q Consensus 237 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~g~~~~V~~~~g~~~~ad~VV~aa~~~~ 295 (531)
..+...+.+.++++|++++++++|++|. + + .|.+.+|+++.+|.||+++|...
T Consensus 191 ~~~~~~~~~~l~~~gV~v~~~~~v~~i~--~-~---~v~~~~g~~i~~D~vi~a~G~~p 243 (364)
T TIGR03169 191 AKVRRLVLRLLARRGIEVHEGAPVTRGP--D-G---ALILADGRTLPADAILWATGARA 243 (364)
T ss_pred HHHHHHHHHHHHHCCCEEEeCCeeEEEc--C-C---eEEeCCCCEEecCEEEEccCCCh
Confidence 4567788888999999999999999885 2 3 37788888999999999888443
No 436
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=92.21 E-value=0.19 Score=47.19 Aligned_cols=33 Identities=33% Similarity=0.334 Sum_probs=30.8
Q ss_pred CCcEEEECCChhHHHHHHHHHHcCCcEEEEccC
Q 048009 17 KWDALVIGGGHNGLTAAAYLARAGLSVAVLERR 49 (531)
Q Consensus 17 ~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~ 49 (531)
-.+|.|||||..|-.-|..++..|++|+++|.+
T Consensus 3 i~kv~ViGaG~MG~gIA~~~A~~G~~V~l~D~~ 35 (307)
T COG1250 3 IKKVAVIGAGVMGAGIAAVFALAGYDVVLKDIS 35 (307)
T ss_pred ccEEEEEcccchhHHHHHHHhhcCCceEEEeCC
Confidence 357999999999999999999988999999997
No 437
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=92.17 E-value=0.3 Score=36.42 Aligned_cols=32 Identities=31% Similarity=0.438 Sum_probs=29.5
Q ss_pred CCcEEEECCChhHHHHHHHHHHc-CCcEEEEcc
Q 048009 17 KWDALVIGGGHNGLTAAAYLARA-GLSVAVLER 48 (531)
Q Consensus 17 ~~dvvIIGaGiaGL~aA~~L~~~-G~~V~v~E~ 48 (531)
..+++|+|+|..|..+|..|.+. +.+|.++++
T Consensus 23 ~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r 55 (86)
T cd05191 23 GKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR 55 (86)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence 46899999999999999999998 688999998
No 438
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.14 E-value=0.16 Score=51.89 Aligned_cols=34 Identities=29% Similarity=0.310 Sum_probs=31.0
Q ss_pred CCcEEEECCChhHHHHHHHHHHcCCcEEEEccCC
Q 048009 17 KWDALVIGGGHNGLTAAAYLARAGLSVAVLERRH 50 (531)
Q Consensus 17 ~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~ 50 (531)
..+|+|+|.|.+|++++..|.++|.+|++.|.++
T Consensus 12 ~~~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~~ 45 (488)
T PRK03369 12 GAPVLVAGAGVTGRAVLAALTRFGARPTVCDDDP 45 (488)
T ss_pred CCeEEEEcCCHHHHHHHHHHHHCCCEEEEEcCCH
Confidence 3579999999999999999999999999999753
No 439
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=92.08 E-value=0.25 Score=39.27 Aligned_cols=32 Identities=31% Similarity=0.505 Sum_probs=28.7
Q ss_pred EEEECCChhHHHHHHHHHHcCCcEEEEccCCC
Q 048009 20 ALVIGGGHNGLTAAAYLARAGLSVAVLERRHV 51 (531)
Q Consensus 20 vvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~ 51 (531)
|+|+|.|-.|...+..|.+.+.+|+++|+++.
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~~ 32 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDPE 32 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEEESSHH
T ss_pred eEEEcCCHHHHHHHHHHHhCCCEEEEEECCcH
Confidence 79999999999999999998789999999864
No 440
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=92.07 E-value=0.19 Score=47.86 Aligned_cols=33 Identities=24% Similarity=0.421 Sum_probs=30.1
Q ss_pred cEEEECCChhHHHHHHHHHHcC--CcEEEEccCCC
Q 048009 19 DALVIGGGHNGLTAAAYLARAG--LSVAVLERRHV 51 (531)
Q Consensus 19 dvvIIGaGiaGL~aA~~L~~~G--~~V~v~E~~~~ 51 (531)
+|+|||+|-.|.+.|+.|+..| .+|.|++++..
T Consensus 2 kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~~ 36 (306)
T cd05291 2 KVVIIGAGHVGSSFAYSLVNQGIADELVLIDINEE 36 (306)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcc
Confidence 6999999999999999999999 58999999654
No 441
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=92.05 E-value=0.19 Score=47.66 Aligned_cols=33 Identities=24% Similarity=0.296 Sum_probs=30.8
Q ss_pred CcEEEECCChhHHHHHHHHHHcCCcEEEEccCC
Q 048009 18 WDALVIGGGHNGLTAAAYLARAGLSVAVLERRH 50 (531)
Q Consensus 18 ~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~ 50 (531)
.+|.|||.|..|.+-|..|+++|++|+++++++
T Consensus 2 ~~Ig~IGlG~mG~~mA~~l~~~G~~V~v~d~~~ 34 (296)
T PRK15461 2 AAIAFIGLGQMGSPMASNLLKQGHQLQVFDVNP 34 (296)
T ss_pred CeEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCH
Confidence 379999999999999999999999999999864
No 442
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=92.01 E-value=0.19 Score=49.54 Aligned_cols=35 Identities=31% Similarity=0.252 Sum_probs=31.9
Q ss_pred CCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCC
Q 048009 17 KWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHV 51 (531)
Q Consensus 17 ~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~ 51 (531)
...|+|||+|..|+.+|..|+..|.+|+++|.++.
T Consensus 202 GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~ 236 (413)
T cd00401 202 GKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPI 236 (413)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEECChh
Confidence 46899999999999999999999999999998653
No 443
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=91.94 E-value=0.24 Score=46.53 Aligned_cols=34 Identities=18% Similarity=0.300 Sum_probs=30.8
Q ss_pred CCcEEEECCChhHHHHHHHHHHcCC-cEEEEccCC
Q 048009 17 KWDALVIGGGHNGLTAAAYLARAGL-SVAVLERRH 50 (531)
Q Consensus 17 ~~dvvIIGaGiaGL~aA~~L~~~G~-~V~v~E~~~ 50 (531)
..+|+|||+|-+|-++|+.|++.|. +|+|++|+.
T Consensus 127 ~k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~ 161 (284)
T PRK12549 127 LERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDP 161 (284)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCH
Confidence 3689999999999999999999997 799999964
No 444
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=91.89 E-value=0.2 Score=50.23 Aligned_cols=34 Identities=26% Similarity=0.401 Sum_probs=31.2
Q ss_pred CCcEEEECCChhHHHHHHHHHHcCCcEEEEccCC
Q 048009 17 KWDALVIGGGHNGLTAAAYLARAGLSVAVLERRH 50 (531)
Q Consensus 17 ~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~ 50 (531)
..+|.|||-|.+|+++|..|.++|++|+++|++.
T Consensus 3 ~~~i~iiGlG~~G~slA~~l~~~G~~V~g~D~~~ 36 (418)
T PRK00683 3 LQRVVVLGLGVTGKSIARFLAQKGVYVIGVDKSL 36 (418)
T ss_pred CCeEEEEEECHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 3579999999999999999999999999999764
No 445
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=91.88 E-value=0.27 Score=46.90 Aligned_cols=36 Identities=17% Similarity=0.389 Sum_probs=31.8
Q ss_pred CCCCcEEEECCChhHHHHHHHHHHcCC--cEEEEccCC
Q 048009 15 EKKWDALVIGGGHNGLTAAAYLARAGL--SVAVLERRH 50 (531)
Q Consensus 15 ~~~~dvvIIGaGiaGL~aA~~L~~~G~--~V~v~E~~~ 50 (531)
....+|+|||+|-.|.++|+.|+..|. ++.|+|.+.
T Consensus 4 ~~~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~ 41 (315)
T PRK00066 4 KQHNKVVLVGDGAVGSSYAYALVNQGIADELVIIDINK 41 (315)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 345799999999999999999999986 799999854
No 446
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=91.87 E-value=0.24 Score=44.71 Aligned_cols=34 Identities=24% Similarity=0.463 Sum_probs=30.6
Q ss_pred CCcEEEECCChhHHHHHHHHHHcCC---cEEEEccCC
Q 048009 17 KWDALVIGGGHNGLTAAAYLARAGL---SVAVLERRH 50 (531)
Q Consensus 17 ~~dvvIIGaGiaGL~aA~~L~~~G~---~V~v~E~~~ 50 (531)
..+|+|+|+|-+|..+|..|.+.|. +|.|++|+.
T Consensus 25 ~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~g 61 (226)
T cd05311 25 EVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSKG 61 (226)
T ss_pred CCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCCC
Confidence 4689999999999999999999996 499999973
No 447
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=91.86 E-value=0.16 Score=54.41 Aligned_cols=35 Identities=20% Similarity=0.207 Sum_probs=32.0
Q ss_pred CCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCC
Q 048009 17 KWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHV 51 (531)
Q Consensus 17 ~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~ 51 (531)
-.+|.|||||..|...|+.++..|++|+++|.++.
T Consensus 335 i~~v~ViGaG~MG~gIA~~~a~~G~~V~l~d~~~~ 369 (737)
T TIGR02441 335 VKTLAVLGAGLMGAGIAQVSVDKGLKTVLKDATPA 369 (737)
T ss_pred ccEEEEECCCHhHHHHHHHHHhCCCcEEEecCCHH
Confidence 35799999999999999999999999999999753
No 448
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=91.85 E-value=0.14 Score=47.83 Aligned_cols=34 Identities=41% Similarity=0.432 Sum_probs=29.2
Q ss_pred CCCcEEEECCChhHHHHHHHHHHcCCcEEEEccC
Q 048009 16 KKWDALVIGGGHNGLTAAAYLARAGLSVAVLERR 49 (531)
Q Consensus 16 ~~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~ 49 (531)
+-.||+|||||-+|+-||.-|+--=..|+|+|=.
T Consensus 353 ~gK~VAVIGGGNSGvEAAIDLAGiv~hVtllEF~ 386 (520)
T COG3634 353 KGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFA 386 (520)
T ss_pred CCceEEEECCCcchHHHHHhHHhhhheeeeeecc
Confidence 3479999999999999999999655679999864
No 449
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=91.74 E-value=0.25 Score=46.73 Aligned_cols=34 Identities=35% Similarity=0.453 Sum_probs=32.0
Q ss_pred CCcEEEECCChhHHHHHHHHHHcCCcEEEEccCC
Q 048009 17 KWDALVIGGGHNGLTAAAYLARAGLSVAVLERRH 50 (531)
Q Consensus 17 ~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~ 50 (531)
..+|+|||.|..|..+|..|...|.+|++++++.
T Consensus 152 g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~ 185 (296)
T PRK08306 152 GSNVLVLGFGRTGMTLARTLKALGANVTVGARKS 185 (296)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence 5789999999999999999999999999999974
No 450
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=91.64 E-value=0.23 Score=49.91 Aligned_cols=35 Identities=37% Similarity=0.489 Sum_probs=30.7
Q ss_pred CcEEEECCChhHHHHHHHHHH--------------cCCcEEEEccCCCC
Q 048009 18 WDALVIGGGHNGLTAAAYLAR--------------AGLSVAVLERRHVI 52 (531)
Q Consensus 18 ~dvvIIGaGiaGL~aA~~L~~--------------~G~~V~v~E~~~~~ 52 (531)
.+|+|||||..|+-.|..|++ .+.+|+|+|+.+.+
T Consensus 174 ~~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~l 222 (424)
T PTZ00318 174 LHFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAGSEV 222 (424)
T ss_pred CEEEEECCCHHHHHHHHHHHHHHHHHHHhhhhcccccCEEEEEcCCCcc
Confidence 489999999999999999986 37889999998764
No 451
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=91.64 E-value=0.31 Score=40.32 Aligned_cols=33 Identities=27% Similarity=0.451 Sum_probs=29.7
Q ss_pred CcEEEECC-ChhHHHHHHHHHHcC--CcEEEEccCC
Q 048009 18 WDALVIGG-GHNGLTAAAYLARAG--LSVAVLERRH 50 (531)
Q Consensus 18 ~dvvIIGa-GiaGL~aA~~L~~~G--~~V~v~E~~~ 50 (531)
++|+|||+ |..|.+.|+.|...+ .++.|+|.+.
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~ 36 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINE 36 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSH
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCc
Confidence 47999999 999999999999986 5699999974
No 452
>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional
Probab=91.60 E-value=0.28 Score=47.63 Aligned_cols=37 Identities=16% Similarity=0.161 Sum_probs=32.7
Q ss_pred CCCCcEEEECCChhHHHHHHHHHHcC-------CcEEEEccCCC
Q 048009 15 EKKWDALVIGGGHNGLTAAAYLARAG-------LSVAVLERRHV 51 (531)
Q Consensus 15 ~~~~dvvIIGaGiaGL~aA~~L~~~G-------~~V~v~E~~~~ 51 (531)
..+.+|.|||+|.-|-+.|..|++.| ++|.++.++..
T Consensus 9 ~~~~ki~ViGaG~wGtAlA~~l~~n~~~~~~~~~~V~lw~~~~~ 52 (365)
T PTZ00345 9 CGPLKVSVIGSGNWGSAISKVVGENTQRNYIFHNEVRMWVLEEI 52 (365)
T ss_pred cCCCeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEeccc
Confidence 34578999999999999999999997 79999988764
No 453
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=91.59 E-value=0.29 Score=48.14 Aligned_cols=42 Identities=14% Similarity=0.153 Sum_probs=35.6
Q ss_pred ccccccCCCCcEEEECC-ChhHHHHHHHHHHcCCcEEEEccCC
Q 048009 9 TTSALKEKKWDALVIGG-GHNGLTAAAYLARAGLSVAVLERRH 50 (531)
Q Consensus 9 ~~~~~~~~~~dvvIIGa-GiaGL~aA~~L~~~G~~V~v~E~~~ 50 (531)
+.+.+.+..++|+|.|| |..|...+..|.++|++|+.+.+..
T Consensus 13 ~~~~~~~~~~~IlVtGgtGfIG~~l~~~L~~~G~~V~~v~r~~ 55 (370)
T PLN02695 13 REPYWPSEKLRICITGAGGFIASHIARRLKAEGHYIIASDWKK 55 (370)
T ss_pred CCCCCCCCCCEEEEECCccHHHHHHHHHHHhCCCEEEEEEecc
Confidence 33445556789999999 9999999999999999999998753
No 454
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=91.57 E-value=0.2 Score=50.50 Aligned_cols=34 Identities=26% Similarity=0.262 Sum_probs=31.8
Q ss_pred CcEEEECCChhHHHHHHHHHHcCCcEEEEccCCC
Q 048009 18 WDALVIGGGHNGLTAAAYLARAGLSVAVLERRHV 51 (531)
Q Consensus 18 ~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~ 51 (531)
.+|.|||.|..|.+.|..|+++|++|++++++..
T Consensus 2 ~~IgvIGLG~MG~~lA~nL~~~G~~V~v~dr~~~ 35 (470)
T PTZ00142 2 SDIGLIGLAVMGQNLALNIASRGFKISVYNRTYE 35 (470)
T ss_pred CEEEEEeEhHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence 5799999999999999999999999999999754
No 455
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=91.42 E-value=0.28 Score=49.58 Aligned_cols=36 Identities=31% Similarity=0.367 Sum_probs=32.6
Q ss_pred CCCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCC
Q 048009 16 KKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHV 51 (531)
Q Consensus 16 ~~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~ 51 (531)
+..+|+|||+|..|+.++..+...|.+|+++|.++.
T Consensus 163 p~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~ 198 (511)
T TIGR00561 163 PPAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPE 198 (511)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 357899999999999999999999999999999753
No 456
>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A.
Probab=91.33 E-value=0.27 Score=40.23 Aligned_cols=32 Identities=28% Similarity=0.424 Sum_probs=28.0
Q ss_pred EEEECCChhHHHHHHHHHHcCCcEEEEccCCC
Q 048009 20 ALVIGGGHNGLTAAAYLARAGLSVAVLERRHV 51 (531)
Q Consensus 20 vvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~ 51 (531)
++|+|+|..+.+.|..++..|++|+|+|-++.
T Consensus 1 L~I~GaG~va~al~~la~~lg~~v~v~d~r~e 32 (136)
T PF13478_consen 1 LVIFGAGHVARALARLAALLGFRVTVVDPRPE 32 (136)
T ss_dssp EEEES-STCHHHHHHHHHHCTEEEEEEES-CC
T ss_pred CEEEeCcHHHHHHHHHHHhCCCEEEEEcCCcc
Confidence 58999999999999999999999999999854
No 457
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=91.26 E-value=0.21 Score=47.39 Aligned_cols=34 Identities=35% Similarity=0.486 Sum_probs=30.8
Q ss_pred CcEEEECCChhHHHHHHHHHHcCCcEEEEccCCC
Q 048009 18 WDALVIGGGHNGLTAAAYLARAGLSVAVLERRHV 51 (531)
Q Consensus 18 ~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~ 51 (531)
++|.|||+|..|...|+.|++.|++|+++=|.++
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~~g~~V~~~~R~~~ 34 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAKAGHDVTLLVRSRR 34 (307)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCeEEEEecHHH
Confidence 4799999999999999999999988998888664
No 458
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=91.22 E-value=0.31 Score=39.99 Aligned_cols=34 Identities=29% Similarity=0.504 Sum_probs=30.1
Q ss_pred CCcEEEECCChhHHHHHHHHHHcCC-cEEEEccCC
Q 048009 17 KWDALVIGGGHNGLTAAAYLARAGL-SVAVLERRH 50 (531)
Q Consensus 17 ~~dvvIIGaGiaGL~aA~~L~~~G~-~V~v~E~~~ 50 (531)
+.+|+|||+|-.|...|..|++.|. +++|+|...
T Consensus 2 ~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~ 36 (135)
T PF00899_consen 2 NKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDI 36 (135)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSB
T ss_pred CCEEEEECcCHHHHHHHHHHHHhCCCceeecCCcc
Confidence 4689999999999999999999997 699999853
No 459
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=91.12 E-value=0.27 Score=46.68 Aligned_cols=33 Identities=21% Similarity=0.233 Sum_probs=30.7
Q ss_pred cEEEECCChhHHHHHHHHHHcCCcEEEEccCCC
Q 048009 19 DALVIGGGHNGLTAAAYLARAGLSVAVLERRHV 51 (531)
Q Consensus 19 dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~ 51 (531)
+|.|||.|..|.+.|..|++.|++|.+++++..
T Consensus 2 ~Ig~IGlG~mG~~la~~L~~~g~~V~~~dr~~~ 34 (298)
T TIGR00872 2 QLGLIGLGRMGANIVRRLAKRGHDCVGYDHDQD 34 (298)
T ss_pred EEEEEcchHHHHHHHHHHHHCCCEEEEEECCHH
Confidence 699999999999999999999999999998753
No 460
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=91.11 E-value=0.17 Score=49.45 Aligned_cols=36 Identities=31% Similarity=0.423 Sum_probs=30.2
Q ss_pred CCcEEEECCChhHHHHHHHHHHcC-------------CcEEEEccCCCC
Q 048009 17 KWDALVIGGGHNGLTAAAYLARAG-------------LSVAVLERRHVI 52 (531)
Q Consensus 17 ~~dvvIIGaGiaGL~aA~~L~~~G-------------~~V~v~E~~~~~ 52 (531)
...++|||||..|.-.|.+|+++- .+|+|+|+.+++
T Consensus 155 ~lti~IvGgG~TGVElAgeL~~~~~~l~~~~~~~~~~~~V~LVea~p~I 203 (405)
T COG1252 155 LLTIVIVGGGPTGVELAGELAERLHRLLKKFRVDPSELRVILVEAGPRI 203 (405)
T ss_pred eeEEEEECCChhHHHHHHHHHHHHHHHhhhhcCCccccEEEEEccCchh
Confidence 357999999999999999998752 289999998864
No 461
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=91.09 E-value=0.27 Score=46.71 Aligned_cols=33 Identities=30% Similarity=0.360 Sum_probs=30.7
Q ss_pred CcEEEECCChhHHHHHHHHHHcCCcEEEEccCC
Q 048009 18 WDALVIGGGHNGLTAAAYLARAGLSVAVLERRH 50 (531)
Q Consensus 18 ~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~ 50 (531)
.+|.|||.|..|...|..|++.|++|++++++.
T Consensus 3 ~~IgviG~G~mG~~~a~~l~~~g~~v~~~d~~~ 35 (296)
T PRK11559 3 MKVGFIGLGIMGKPMSKNLLKAGYSLVVYDRNP 35 (296)
T ss_pred ceEEEEccCHHHHHHHHHHHHCCCeEEEEcCCH
Confidence 479999999999999999999999999999864
No 462
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=91.04 E-value=0.25 Score=50.35 Aligned_cols=35 Identities=20% Similarity=0.196 Sum_probs=31.5
Q ss_pred CCcEEEECCChhHHH-HHHHHHHcCCcEEEEccCCC
Q 048009 17 KWDALVIGGGHNGLT-AAAYLARAGLSVAVLERRHV 51 (531)
Q Consensus 17 ~~dvvIIGaGiaGL~-aA~~L~~~G~~V~v~E~~~~ 51 (531)
..+|.|||.|-+|++ +|..|.++|++|++.|....
T Consensus 7 ~~~v~viG~G~sG~s~~a~~L~~~G~~V~~~D~~~~ 42 (461)
T PRK00421 7 IKRIHFVGIGGIGMSGLAEVLLNLGYKVSGSDLKES 42 (461)
T ss_pred CCEEEEEEEchhhHHHHHHHHHhCCCeEEEECCCCC
Confidence 357999999999999 59999999999999998754
No 463
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=91.04 E-value=0.25 Score=46.96 Aligned_cols=31 Identities=35% Similarity=0.445 Sum_probs=28.6
Q ss_pred EEEECCChhHHHHHHHHHHcCC-cEEEEccCC
Q 048009 20 ALVIGGGHNGLTAAAYLARAGL-SVAVLERRH 50 (531)
Q Consensus 20 vvIIGaGiaGL~aA~~L~~~G~-~V~v~E~~~ 50 (531)
|+|||+|..|...|..|+.+|+ +|+++|.+.
T Consensus 1 I~IIGaG~vG~~ia~~la~~~l~eV~L~Di~e 32 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALKELGDVVLLDIVE 32 (300)
T ss_pred CEEECCCHHHHHHHHHHHhCCCcEEEEEeCCC
Confidence 6899999999999999999877 999999974
No 464
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=91.03 E-value=0.19 Score=40.48 Aligned_cols=36 Identities=33% Similarity=0.410 Sum_probs=28.6
Q ss_pred cCCCCcEEEECCChhHHHHHHHHHHcCCcEEEEccC
Q 048009 14 KEKKWDALVIGGGHNGLTAAAYLARAGLSVAVLERR 49 (531)
Q Consensus 14 ~~~~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~ 49 (531)
+....+|.|||+|-.|-+.|..|.+.|+.|.-+..+
T Consensus 7 ~~~~l~I~iIGaGrVG~~La~aL~~ag~~v~~v~sr 42 (127)
T PF10727_consen 7 QAARLKIGIIGAGRVGTALARALARAGHEVVGVYSR 42 (127)
T ss_dssp -----EEEEECTSCCCCHHHHHHHHTTSEEEEESSC
T ss_pred CCCccEEEEECCCHHHHHHHHHHHHCCCeEEEEEeC
Confidence 345799999999999999999999999998877654
No 465
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=90.93 E-value=0.3 Score=45.91 Aligned_cols=34 Identities=29% Similarity=0.373 Sum_probs=31.6
Q ss_pred CCcEEEECCChhHHHHHHHHHHcCCcEEEEccCC
Q 048009 17 KWDALVIGGGHNGLTAAAYLARAGLSVAVLERRH 50 (531)
Q Consensus 17 ~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~ 50 (531)
..+|+|||.|-.|.+.|..|+..|.+|++++|+.
T Consensus 151 gk~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~ 184 (287)
T TIGR02853 151 GSNVMVLGFGRTGMTIARTFSALGARVFVGARSS 184 (287)
T ss_pred CCEEEEEcChHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 4689999999999999999999999999999965
No 466
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=90.86 E-value=0.27 Score=53.42 Aligned_cols=33 Identities=30% Similarity=0.517 Sum_probs=30.6
Q ss_pred CcEEEECCChhHHHHHHHHHHcCCc-EEEEccCC
Q 048009 18 WDALVIGGGHNGLTAAAYLARAGLS-VAVLERRH 50 (531)
Q Consensus 18 ~dvvIIGaGiaGL~aA~~L~~~G~~-V~v~E~~~ 50 (531)
.+|+|||||..|+-+|..|.+.|.+ |+|+++++
T Consensus 571 k~VvVIGgG~~a~d~A~~~~r~Ga~~Vtlv~r~~ 604 (752)
T PRK12778 571 KKVAVVGGGNTAMDSARTAKRLGAERVTIVYRRS 604 (752)
T ss_pred CcEEEECCcHHHHHHHHHHHHcCCCeEEEeeecC
Confidence 6899999999999999999999987 99999864
No 467
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=90.84 E-value=0.24 Score=53.01 Aligned_cols=35 Identities=26% Similarity=0.313 Sum_probs=31.1
Q ss_pred CCcEEEECCChhHHHHHHHHH-HcCCcEEEEccCCC
Q 048009 17 KWDALVIGGGHNGLTAAAYLA-RAGLSVAVLERRHV 51 (531)
Q Consensus 17 ~~dvvIIGaGiaGL~aA~~L~-~~G~~V~v~E~~~~ 51 (531)
-.+|+|||+|..|..-|..++ +.|++|+++|.++.
T Consensus 304 i~~v~ViGaG~mG~~iA~~~a~~~G~~V~l~d~~~~ 339 (699)
T TIGR02440 304 IKKVGILGGGLMGGGIASVTATKAGIPVRIKDINPQ 339 (699)
T ss_pred ccEEEEECCcHHHHHHHHHHHHHcCCeEEEEeCCHH
Confidence 357999999999999999998 58999999999753
No 468
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=90.83 E-value=0.3 Score=37.19 Aligned_cols=32 Identities=28% Similarity=0.377 Sum_probs=28.7
Q ss_pred cEEEECCChhHHHHHHHHHHcC---CcEEEE-ccCC
Q 048009 19 DALVIGGGHNGLTAAAYLARAG---LSVAVL-ERRH 50 (531)
Q Consensus 19 dvvIIGaGiaGL~aA~~L~~~G---~~V~v~-E~~~ 50 (531)
+|.|||+|-.|.+.+..|.+.| ++|.++ ++++
T Consensus 1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r~~ 36 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSRSP 36 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEESSH
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccCcH
Confidence 5899999999999999999999 899966 8764
No 469
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=90.80 E-value=0.32 Score=50.09 Aligned_cols=34 Identities=35% Similarity=0.478 Sum_probs=31.3
Q ss_pred CCcEEEECCChhHHHHHHHHHHcCCcEEEEccCC
Q 048009 17 KWDALVIGGGHNGLTAAAYLARAGLSVAVLERRH 50 (531)
Q Consensus 17 ~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~ 50 (531)
..+|.|||.|.+|+++|..|.++|++|.+.|...
T Consensus 7 ~~~i~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~ 40 (498)
T PRK02006 7 GPMVLVLGLGESGLAMARWCARHGARLRVADTRE 40 (498)
T ss_pred CCEEEEEeecHhHHHHHHHHHHCCCEEEEEcCCC
Confidence 3579999999999999999999999999999765
No 470
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=90.77 E-value=0.32 Score=46.45 Aligned_cols=33 Identities=27% Similarity=0.297 Sum_probs=29.9
Q ss_pred CcEEEECCChhHHHHHHHHHHcCC--cEEEEccCC
Q 048009 18 WDALVIGGGHNGLTAAAYLARAGL--SVAVLERRH 50 (531)
Q Consensus 18 ~dvvIIGaGiaGL~aA~~L~~~G~--~V~v~E~~~ 50 (531)
.+|+|||+|..|.+.|..|++.|+ +|+++++++
T Consensus 7 ~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~ 41 (307)
T PRK07502 7 DRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSA 41 (307)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCH
Confidence 579999999999999999999985 899999864
No 471
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=90.76 E-value=0.33 Score=49.52 Aligned_cols=34 Identities=32% Similarity=0.402 Sum_probs=31.1
Q ss_pred CCcEEEECCChhHHHHHHHHHHcCCcEEEEccCC
Q 048009 17 KWDALVIGGGHNGLTAAAYLARAGLSVAVLERRH 50 (531)
Q Consensus 17 ~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~ 50 (531)
..+|.|+|.|.+|+++|..|.++|.+|++.|+..
T Consensus 15 ~~~v~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~ 48 (473)
T PRK00141 15 SGRVLVAGAGVSGRGIAAMLSELGCDVVVADDNE 48 (473)
T ss_pred CCeEEEEccCHHHHHHHHHHHHCCCEEEEECCCh
Confidence 3579999999999999999999999999999754
No 472
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=90.72 E-value=0.23 Score=53.20 Aligned_cols=34 Identities=32% Similarity=0.322 Sum_probs=31.0
Q ss_pred CCcEEEECCChhHHHHHHHHH-HcCCcEEEEccCC
Q 048009 17 KWDALVIGGGHNGLTAAAYLA-RAGLSVAVLERRH 50 (531)
Q Consensus 17 ~~dvvIIGaGiaGL~aA~~L~-~~G~~V~v~E~~~ 50 (531)
-.+|+|||||..|..-|..++ ..|++|+++|.++
T Consensus 309 i~~v~ViGaG~mG~giA~~~a~~~G~~V~l~d~~~ 343 (708)
T PRK11154 309 VNKVGVLGGGLMGGGIAYVTATKAGLPVRIKDINP 343 (708)
T ss_pred ccEEEEECCchhhHHHHHHHHHHcCCeEEEEeCCH
Confidence 357999999999999999999 8899999999864
No 473
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=90.69 E-value=0.36 Score=47.38 Aligned_cols=35 Identities=26% Similarity=0.406 Sum_probs=31.7
Q ss_pred CCCcEEEEC-CChhHHHHHHHHHHcCCcEEEEccCC
Q 048009 16 KKWDALVIG-GGHNGLTAAAYLARAGLSVAVLERRH 50 (531)
Q Consensus 16 ~~~dvvIIG-aGiaGL~aA~~L~~~G~~V~v~E~~~ 50 (531)
...+|+||| .|..|-+.|..|+++|++|+++++++
T Consensus 97 ~~~~I~IiGG~GlmG~slA~~l~~~G~~V~~~d~~~ 132 (374)
T PRK11199 97 DLRPVVIVGGKGQLGRLFAKMLTLSGYQVRILEQDD 132 (374)
T ss_pred ccceEEEEcCCChhhHHHHHHHHHCCCeEEEeCCCc
Confidence 347899999 89999999999999999999999854
No 474
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=90.64 E-value=0.28 Score=46.66 Aligned_cols=32 Identities=31% Similarity=0.312 Sum_probs=30.3
Q ss_pred cEEEECCChhHHHHHHHHHHcCCcEEEEccCC
Q 048009 19 DALVIGGGHNGLTAAAYLARAGLSVAVLERRH 50 (531)
Q Consensus 19 dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~ 50 (531)
+|.|||.|..|...|..|++.|++|+++++++
T Consensus 2 ~Ig~IGlG~MG~~mA~~L~~~g~~v~v~dr~~ 33 (301)
T PRK09599 2 QLGMIGLGRMGGNMARRLLRGGHEVVGYDRNP 33 (301)
T ss_pred EEEEEcccHHHHHHHHHHHHCCCeEEEEECCH
Confidence 69999999999999999999999999999874
No 475
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=90.54 E-value=0.43 Score=42.05 Aligned_cols=33 Identities=42% Similarity=0.597 Sum_probs=30.0
Q ss_pred CCcEEEECC-ChhHHHHHHHHHHcCCcEEEEccC
Q 048009 17 KWDALVIGG-GHNGLTAAAYLARAGLSVAVLERR 49 (531)
Q Consensus 17 ~~dvvIIGa-GiaGL~aA~~L~~~G~~V~v~E~~ 49 (531)
..+++|+|| |-.|..+|..|++.|.+|+++.|+
T Consensus 28 ~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~ 61 (194)
T cd01078 28 GKTAVVLGGTGPVGQRAAVLLAREGARVVLVGRD 61 (194)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 468999997 999999999999999999999875
No 476
>PTZ00117 malate dehydrogenase; Provisional
Probab=90.54 E-value=0.39 Score=45.97 Aligned_cols=35 Identities=23% Similarity=0.282 Sum_probs=31.4
Q ss_pred CCCcEEEECCChhHHHHHHHHHHcC-CcEEEEccCC
Q 048009 16 KKWDALVIGGGHNGLTAAAYLARAG-LSVAVLERRH 50 (531)
Q Consensus 16 ~~~dvvIIGaGiaGL~aA~~L~~~G-~~V~v~E~~~ 50 (531)
...+|+|||+|..|.+.|+.|+..| .++.|+|.+.
T Consensus 4 ~~~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~~ 39 (319)
T PTZ00117 4 KRKKISMIGAGQIGSTVALLILQKNLGDVVLYDVIK 39 (319)
T ss_pred CCcEEEEECCCHHHHHHHHHHHHCCCCeEEEEECCC
Confidence 3579999999999999999999998 6899999865
No 477
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=90.52 E-value=0.42 Score=45.54 Aligned_cols=35 Identities=20% Similarity=0.377 Sum_probs=30.8
Q ss_pred CCCcEEEECCChhHHHHHHHHHHcCC--cEEEEccCC
Q 048009 16 KKWDALVIGGGHNGLTAAAYLARAGL--SVAVLERRH 50 (531)
Q Consensus 16 ~~~dvvIIGaGiaGL~aA~~L~~~G~--~V~v~E~~~ 50 (531)
.+.+|+|||+|..|.++|+.|+..|. ++.|+|.+.
T Consensus 2 ~~~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~ 38 (312)
T cd05293 2 PRNKVTVVGVGQVGMACAISILAKGLADELVLVDVVE 38 (312)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCc
Confidence 35799999999999999999998874 699999865
No 478
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=90.36 E-value=0.45 Score=40.98 Aligned_cols=32 Identities=25% Similarity=0.394 Sum_probs=29.1
Q ss_pred cEEEECCChhHHHHHHHHHHcCCc-EEEEccCC
Q 048009 19 DALVIGGGHNGLTAAAYLARAGLS-VAVLERRH 50 (531)
Q Consensus 19 dvvIIGaGiaGL~aA~~L~~~G~~-V~v~E~~~ 50 (531)
+|+|||+|-.|...|..|++.|.. ++|+|...
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~ 33 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDV 33 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 589999999999999999999974 99999953
No 479
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=90.35 E-value=0.32 Score=49.32 Aligned_cols=34 Identities=35% Similarity=0.615 Sum_probs=31.0
Q ss_pred CcEEEECCChhHHHHHHHHHHcCCcEEEEccCCC
Q 048009 18 WDALVIGGGHNGLTAAAYLARAGLSVAVLERRHV 51 (531)
Q Consensus 18 ~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~ 51 (531)
--|+|||.|-+|+++|..|.++|++|++.|....
T Consensus 7 ~~~~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~~ 40 (448)
T PRK03803 7 GLHIVVGLGKTGLSVVRFLARQGIPFAVMDSREQ 40 (448)
T ss_pred CeEEEEeecHhHHHHHHHHHhCCCeEEEEeCCCC
Confidence 4599999999999999999999999999997653
No 480
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=90.34 E-value=0.42 Score=46.10 Aligned_cols=34 Identities=35% Similarity=0.642 Sum_probs=31.6
Q ss_pred CCCcEEEECCChhHHHHHHHHHHcCC-cEEEEccC
Q 048009 16 KKWDALVIGGGHNGLTAAAYLARAGL-SVAVLERR 49 (531)
Q Consensus 16 ~~~dvvIIGaGiaGL~aA~~L~~~G~-~V~v~E~~ 49 (531)
...+|+|||+|--|..+|..|++.|. +++|+|..
T Consensus 23 ~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D 57 (339)
T PRK07688 23 REKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRD 57 (339)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 46899999999999999999999998 89999995
No 481
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=90.30 E-value=0.48 Score=39.89 Aligned_cols=34 Identities=24% Similarity=0.370 Sum_probs=30.5
Q ss_pred CCcEEEECCChhHHHHHHHHHHcC-CcEEEEccCC
Q 048009 17 KWDALVIGGGHNGLTAAAYLARAG-LSVAVLERRH 50 (531)
Q Consensus 17 ~~dvvIIGaGiaGL~aA~~L~~~G-~~V~v~E~~~ 50 (531)
..+++|||+|..|.+.|..|++.| .+|++++++.
T Consensus 19 ~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~ 53 (155)
T cd01065 19 GKKVLILGAGGAARAVAYALAELGAAKIVIVNRTL 53 (155)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCH
Confidence 478999999999999999999996 8899998864
No 482
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=90.25 E-value=0.43 Score=45.99 Aligned_cols=35 Identities=29% Similarity=0.542 Sum_probs=31.9
Q ss_pred CCCcEEEECCChhHHHHHHHHHHcCC-cEEEEccCC
Q 048009 16 KKWDALVIGGGHNGLTAAAYLARAGL-SVAVLERRH 50 (531)
Q Consensus 16 ~~~dvvIIGaGiaGL~aA~~L~~~G~-~V~v~E~~~ 50 (531)
...+|+|||+|-.|..+|..|++.|. +++|+|...
T Consensus 23 ~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ 58 (338)
T PRK12475 23 REKHVLIVGAGALGAANAEALVRAGIGKLTIADRDY 58 (338)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence 45789999999999999999999997 799999964
No 483
>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=90.18 E-value=0.44 Score=48.17 Aligned_cols=35 Identities=23% Similarity=0.459 Sum_probs=31.7
Q ss_pred CCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCC
Q 048009 17 KWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHV 51 (531)
Q Consensus 17 ~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~ 51 (531)
..+|.|||-|-+|++++..|+++|++|++.|....
T Consensus 6 ~~~i~v~G~G~sG~s~~~~l~~~G~~v~~~D~~~~ 40 (438)
T PRK03806 6 GKKVVIIGLGLTGLSCVDFFLARGVTPRVIDTRIT 40 (438)
T ss_pred CCEEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCCC
Confidence 45799999999999999999999999999997653
No 484
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=90.10 E-value=0.49 Score=43.67 Aligned_cols=35 Identities=29% Similarity=0.327 Sum_probs=31.8
Q ss_pred CCCcEEEECCChhHHHHHHHHHHcC-CcEEEEccCC
Q 048009 16 KKWDALVIGGGHNGLTAAAYLARAG-LSVAVLERRH 50 (531)
Q Consensus 16 ~~~dvvIIGaGiaGL~aA~~L~~~G-~~V~v~E~~~ 50 (531)
...+|+|||+|-.|..+|..|++.| -+++|+|...
T Consensus 29 ~~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~ 64 (268)
T PRK15116 29 ADAHICVVGIGGVGSWAAEALARTGIGAITLIDMDD 64 (268)
T ss_pred cCCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCE
Confidence 4689999999999999999999999 5799999854
No 485
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=90.02 E-value=0.38 Score=47.29 Aligned_cols=35 Identities=26% Similarity=0.180 Sum_probs=32.1
Q ss_pred CCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCC
Q 048009 17 KWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHV 51 (531)
Q Consensus 17 ~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~ 51 (531)
...|+|||.|..|..+|..|+..|.+|+++|.++.
T Consensus 195 Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp~ 229 (406)
T TIGR00936 195 GKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDPI 229 (406)
T ss_pred cCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCChh
Confidence 46899999999999999999999999999998763
No 486
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=90.01 E-value=0.45 Score=44.48 Aligned_cols=34 Identities=26% Similarity=0.329 Sum_probs=30.8
Q ss_pred CCcEEEECCChhHHHHHHHHHHcCCcEEEEccCC
Q 048009 17 KWDALVIGGGHNGLTAAAYLARAGLSVAVLERRH 50 (531)
Q Consensus 17 ~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~ 50 (531)
..+++|+|+|-+|.++|..|++.|.+|+|+.|+.
T Consensus 117 ~k~vliiGaGg~g~aia~~L~~~g~~v~v~~R~~ 150 (270)
T TIGR00507 117 NQRVLIIGAGGAARAVALPLLKADCNVIIANRTV 150 (270)
T ss_pred CCEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 4579999999999999999999999999998863
No 487
>PLN02602 lactate dehydrogenase
Probab=90.00 E-value=0.56 Score=45.34 Aligned_cols=33 Identities=21% Similarity=0.336 Sum_probs=29.9
Q ss_pred CcEEEECCChhHHHHHHHHHHcCC--cEEEEccCC
Q 048009 18 WDALVIGGGHNGLTAAAYLARAGL--SVAVLERRH 50 (531)
Q Consensus 18 ~dvvIIGaGiaGL~aA~~L~~~G~--~V~v~E~~~ 50 (531)
.+|+|||+|-.|.++|+.|+..+. ++.|+|.+.
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~LiDi~~ 72 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTILTQDLADELALVDVNP 72 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCC
Confidence 799999999999999999998874 699999864
No 488
>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC. Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products.
Probab=89.98 E-value=0.46 Score=43.44 Aligned_cols=36 Identities=22% Similarity=0.276 Sum_probs=33.0
Q ss_pred CCCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCC
Q 048009 16 KKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHV 51 (531)
Q Consensus 16 ~~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~ 51 (531)
+..+++|+|||..+...|..++..|++|+|+|-++.
T Consensus 99 p~~~L~IfGaG~va~~la~la~~lGf~V~v~D~R~~ 134 (246)
T TIGR02964 99 PAPHVVLFGAGHVGRALVRALAPLPCRVTWVDSREA 134 (246)
T ss_pred CCCEEEEECCcHHHHHHHHHHhcCCCEEEEEeCCcc
Confidence 468999999999999999999999999999997654
No 489
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=89.97 E-value=0.4 Score=40.20 Aligned_cols=34 Identities=32% Similarity=0.262 Sum_probs=28.2
Q ss_pred CCcEEEECCChhHHHHHHHHHHcCCcEEEEccCC
Q 048009 17 KWDALVIGGGHNGLTAAAYLARAGLSVAVLERRH 50 (531)
Q Consensus 17 ~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~ 50 (531)
-..++|+|=|-.|-.+|..|+..|.+|+|.|..+
T Consensus 23 Gk~vvV~GYG~vG~g~A~~lr~~Ga~V~V~e~DP 56 (162)
T PF00670_consen 23 GKRVVVIGYGKVGKGIARALRGLGARVTVTEIDP 56 (162)
T ss_dssp TSEEEEE--SHHHHHHHHHHHHTT-EEEEE-SSH
T ss_pred CCEEEEeCCCcccHHHHHHHhhCCCEEEEEECCh
Confidence 4679999999999999999999999999999976
No 490
>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=89.86 E-value=0.33 Score=49.13 Aligned_cols=33 Identities=24% Similarity=0.269 Sum_probs=29.4
Q ss_pred CCcEEEECCChhHHHHHHHHHHcCCcEEEEccCC
Q 048009 17 KWDALVIGGGHNGLTAAAYLARAGLSVAVLERRH 50 (531)
Q Consensus 17 ~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~ 50 (531)
..+|+|+|.|.+|.+||..|.+ |.+|+|.|...
T Consensus 6 ~~~v~v~G~G~sG~a~~~~L~~-g~~v~v~D~~~ 38 (454)
T PRK01368 6 KQKIGVFGLGKTGISVYEELQN-KYDVIVYDDLK 38 (454)
T ss_pred CCEEEEEeecHHHHHHHHHHhC-CCEEEEECCCC
Confidence 4679999999999999999995 99999999653
No 491
>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=89.86 E-value=0.34 Score=49.35 Aligned_cols=33 Identities=27% Similarity=0.332 Sum_probs=30.5
Q ss_pred CcEEEECCChhHHHHHHHHHHcCCcEEEEccCC
Q 048009 18 WDALVIGGGHNGLTAAAYLARAGLSVAVLERRH 50 (531)
Q Consensus 18 ~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~ 50 (531)
.+|.|||.|.+|+++|..|.++|++|.+.|...
T Consensus 10 ~~i~viG~G~~G~~~a~~l~~~G~~v~~~D~~~ 42 (460)
T PRK01390 10 KTVAVFGLGGSGLATARALVAGGAEVIAWDDNP 42 (460)
T ss_pred CEEEEEeecHhHHHHHHHHHHCCCEEEEECCCh
Confidence 579999999999999999999999999999753
No 492
>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)). Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.
Probab=89.86 E-value=0.4 Score=46.21 Aligned_cols=32 Identities=25% Similarity=0.276 Sum_probs=29.5
Q ss_pred cEEEECCChhHHHHHHHHHHcC--------CcEEEEccCC
Q 048009 19 DALVIGGGHNGLTAAAYLARAG--------LSVAVLERRH 50 (531)
Q Consensus 19 dvvIIGaGiaGL~aA~~L~~~G--------~~V~v~E~~~ 50 (531)
+|+|||+|.-|.+.|..|+++| ++|+++.++.
T Consensus 1 kI~VIGaG~wGtALA~~la~ng~~~~~~~~~~V~lw~~~~ 40 (342)
T TIGR03376 1 RVAVVGSGNWGTAIAKIVAENARALPELFEESVRMWVFEE 40 (342)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCcccccCCceEEEEEecc
Confidence 5899999999999999999999 9999998843
No 493
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=89.57 E-value=0.38 Score=48.90 Aligned_cols=34 Identities=24% Similarity=0.415 Sum_probs=31.4
Q ss_pred CcEEEECCChhHHHHHHHHHHcCCcEEEEccCCC
Q 048009 18 WDALVIGGGHNGLTAAAYLARAGLSVAVLERRHV 51 (531)
Q Consensus 18 ~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~ 51 (531)
++|+|||+|..|...|..|.++|++|+++|+++.
T Consensus 1 m~viIiG~G~ig~~~a~~L~~~g~~v~vid~~~~ 34 (453)
T PRK09496 1 MKIIIVGAGQVGYTLAENLSGENNDVTVIDTDEE 34 (453)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEECCHH
Confidence 3799999999999999999999999999999754
No 494
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=89.56 E-value=0.45 Score=47.10 Aligned_cols=35 Identities=29% Similarity=0.222 Sum_probs=32.1
Q ss_pred CCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCC
Q 048009 17 KWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHV 51 (531)
Q Consensus 17 ~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~ 51 (531)
...|+|||.|..|..+|..|+..|.+|+++|.++.
T Consensus 212 Gk~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~dp~ 246 (425)
T PRK05476 212 GKVVVVAGYGDVGKGCAQRLRGLGARVIVTEVDPI 246 (425)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCch
Confidence 46799999999999999999999999999998753
No 495
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=89.56 E-value=0.23 Score=47.13 Aligned_cols=41 Identities=34% Similarity=0.409 Sum_probs=37.6
Q ss_pred CCCcEEEECCChhHHHHHHHHHHcCCcEEEEccCCCCCcee
Q 048009 16 KKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRHVIGGAA 56 (531)
Q Consensus 16 ~~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~~~GG~~ 56 (531)
-..+.+|||||..||--+-.-.+.|-+||++|-.+.+||.+
T Consensus 210 vPk~~~viG~G~IGLE~gsV~~rLGseVT~VEf~~~i~~~m 250 (506)
T KOG1335|consen 210 VPKKLTVIGAGYIGLEMGSVWSRLGSEVTVVEFLDQIGGVM 250 (506)
T ss_pred CcceEEEEcCceeeeehhhHHHhcCCeEEEEEehhhhcccc
Confidence 35789999999999999999999999999999999998873
No 496
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=89.51 E-value=0.57 Score=44.22 Aligned_cols=34 Identities=18% Similarity=0.240 Sum_probs=30.2
Q ss_pred CCcEEEECCChhHHHHHHHHHHcCCc-EEEEccCC
Q 048009 17 KWDALVIGGGHNGLTAAAYLARAGLS-VAVLERRH 50 (531)
Q Consensus 17 ~~dvvIIGaGiaGL~aA~~L~~~G~~-V~v~E~~~ 50 (531)
...++|+|||=+|.++|+.|++.|.+ |+|+.|+.
T Consensus 126 ~k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~~ 160 (289)
T PRK12548 126 GKKLTVIGAGGAATAIQVQCALDGAKEITIFNIKD 160 (289)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCc
Confidence 35799999999999999999999986 99999864
No 497
>PLN02256 arogenate dehydrogenase
Probab=89.40 E-value=0.53 Score=44.66 Aligned_cols=35 Identities=23% Similarity=0.301 Sum_probs=31.8
Q ss_pred CCCcEEEECCChhHHHHHHHHHHcCCcEEEEccCC
Q 048009 16 KKWDALVIGGGHNGLTAAAYLARAGLSVAVLERRH 50 (531)
Q Consensus 16 ~~~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~~ 50 (531)
...+|+|||.|..|-+.|..|.+.|++|.+++++.
T Consensus 35 ~~~kI~IIG~G~mG~slA~~L~~~G~~V~~~d~~~ 69 (304)
T PLN02256 35 RKLKIGIVGFGNFGQFLAKTFVKQGHTVLATSRSD 69 (304)
T ss_pred CCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECcc
Confidence 45789999999999999999999999999999874
No 498
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=89.34 E-value=0.64 Score=38.60 Aligned_cols=32 Identities=28% Similarity=0.463 Sum_probs=29.3
Q ss_pred cEEEECCChhHHHHHHHHHHcCC-cEEEEccCC
Q 048009 19 DALVIGGGHNGLTAAAYLARAGL-SVAVLERRH 50 (531)
Q Consensus 19 dvvIIGaGiaGL~aA~~L~~~G~-~V~v~E~~~ 50 (531)
+|+|||+|-.|...|..|++.|. +++|+|...
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d~ 33 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFDT 33 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCC
Confidence 58999999999999999999997 699999864
No 499
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=89.29 E-value=0.66 Score=41.14 Aligned_cols=35 Identities=34% Similarity=0.547 Sum_probs=31.9
Q ss_pred CCCCcEEEECCChhHHHHHHHHHHcCC-cEEEEccC
Q 048009 15 EKKWDALVIGGGHNGLTAAAYLARAGL-SVAVLERR 49 (531)
Q Consensus 15 ~~~~dvvIIGaGiaGL~aA~~L~~~G~-~V~v~E~~ 49 (531)
-...+|+|||.|-.|..+|..|++.|. +++|+|..
T Consensus 19 l~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d 54 (202)
T TIGR02356 19 LLNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDD 54 (202)
T ss_pred hcCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCC
Confidence 456899999999999999999999996 79999985
No 500
>PRK03815 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=89.29 E-value=0.45 Score=47.22 Aligned_cols=31 Identities=16% Similarity=0.220 Sum_probs=28.5
Q ss_pred CcEEEECCChhHHHHHHHHHHcCCcEEEEccC
Q 048009 18 WDALVIGGGHNGLTAAAYLARAGLSVAVLERR 49 (531)
Q Consensus 18 ~dvvIIGaGiaGL~aA~~L~~~G~~V~v~E~~ 49 (531)
++|.|||.|-+|+++|..|. +|.+|++.|..
T Consensus 1 ~~v~v~G~G~sG~a~a~~L~-~G~~V~~~D~~ 31 (401)
T PRK03815 1 MKISLFGYGKTTKALAKFLK-KFGGVDIFDDK 31 (401)
T ss_pred CeEEEEeECHHHHHHHHHHh-CCCeEEEEcCC
Confidence 36899999999999999999 99999999965
Done!