BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048010
(320 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1IYM|A Chain A, Ring-H2 Finger Domain Of El5
Length = 55
Score = 74.7 bits (182), Expect = 7e-14, Method: Composition-based stats.
Identities = 28/46 (60%), Positives = 34/46 (73%)
Query: 110 ALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCR 155
+ECAVCL E ED E R +P+C H FH EC+D WL SH+TCP+CR
Sbjct: 5 GVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCR 50
>pdb|2ECT|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring
Finger) Domain Of Ring Finger Protein 126
Length = 78
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/62 (46%), Positives = 39/62 (62%), Gaps = 2/62 (3%)
Query: 106 VGKGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLASEPGET 165
VG G LEC VC ++ E++R +P C+H+FH CI WLE H +CPVCR +L + T
Sbjct: 12 VGSG-LECPVCKEDYALGESVRQLP-CNHLFHDSCIVPWLEQHDSCPVCRKSLTGQNTAT 69
Query: 166 TP 167
P
Sbjct: 70 NP 71
>pdb|1X4J|A Chain A, Solution Structure Of Ring Finger In Ring Finger Protein
38
Length = 75
Score = 58.5 bits (140), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 36/51 (70%), Gaps = 1/51 (1%)
Query: 113 CAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLASEPG 163
C VC+ +FE + LR++P C+H FH +C+D WL+++ TCP+CR++ G
Sbjct: 26 CVVCMCDFESRQLLRVLP-CNHEFHAKCVDKWLKANRTCPICRADSGPSSG 75
>pdb|2KIZ|A Chain A, Solution Structure Of Arkadia Ring-H2 Finger Domain
Length = 69
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 37/55 (67%), Gaps = 2/55 (3%)
Query: 112 ECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLASE-PGET 165
+C +CL+ E+ E +R +P C H+FH C+D WL ++ CP+CR ++ ++ P E+
Sbjct: 16 KCTICLSILEEGEDVRRLP-CMHLFHQVCVDQWLITNKKCPICRVDIEAQLPSES 69
>pdb|2EP4|A Chain A, Solution Structure Of Ring Finger From Human Ring Finger
Protein 24
Length = 74
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Query: 113 CAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVC 154
CAVCL +F+ + L + P C H FH +C+ WLE CP+C
Sbjct: 18 CAVCLEDFKPRDELGICP-CKHAFHRKCLIKWLEVRKVCPLC 58
>pdb|2L0B|A Chain A, Solution Nmr Structure Of Zinc Finger Domain Of E3
Ubiquitin-Protein Ligase Praja-1 From Homo Sapiens,
Northeast Structural Genomics Consortium (Nesg) Target
Hr4710b
Length = 91
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 36/70 (51%), Gaps = 3/70 (4%)
Query: 87 REVIDTFPTFVYSEVKTLKVGKGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLE 146
+E ID P + +E VG+ + C +C +E+ + +P C H FH C+ WL+
Sbjct: 19 KESIDALPEILVTEDHG-AVGQ-EMCCPICCSEYVKGDVATELP-CHHYFHKPCVSIWLQ 75
Query: 147 SHTTCPVCRS 156
TCPVCR
Sbjct: 76 KSGTCPVCRC 85
>pdb|2ECN|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring
Finger Protein 141
Length = 70
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 5/44 (11%)
Query: 112 ECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCR 155
EC +C++ D LI C H F +CID W + H CP+CR
Sbjct: 17 ECCICMDGRAD-----LILPCAHSFCQKCIDKWSDRHRNCPICR 55
>pdb|4AYC|B Chain B, Rnf8 Ring Domain Structure
Length = 138
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 4/57 (7%)
Query: 106 VGKGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLASEP 162
V + L+C +C F + TL C H F CI+ W++ CP+CR ++ S+
Sbjct: 49 VLENELQCIICSEYFIEAVTLN----CAHSFCSYCINEWMKRKIECPICRKDIKSKT 101
>pdb|4EPO|C Chain C, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|G Chain G, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|H Chain H, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|K Chain K, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|L Chain L, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
Length = 149
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 4/56 (7%)
Query: 106 VGKGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLASE 161
V + L+C +C F + TL C H F CI+ W++ CP+CR ++ S+
Sbjct: 60 VLENELQCIICSEYFIEAVTLN----CAHSFCSYCINEWMKRKIECPICRKDIKSK 111
>pdb|4AYC|A Chain A, Rnf8 Ring Domain Structure
Length = 138
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 4/57 (7%)
Query: 106 VGKGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLASEP 162
V + L+C +C F + TL C H F CI+ W++ CP+CR ++ S+
Sbjct: 49 VLENELQCIICSEYFIEAVTLN----CAHSFCSYCINEWMKRKIECPICRKDIKSKT 101
>pdb|4AP4|A Chain A, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex
Length = 133
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 33/58 (56%), Gaps = 3/58 (5%)
Query: 104 LKVGKGALECAVCLNEF-EDDETLRLI--PKCDHVFHPECIDAWLESHTTCPVCRSNL 158
+ +G G + C +C++ + E + RLI +C HVF +C+ L++ TCP CR +
Sbjct: 66 IYIGSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKI 123
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 38/75 (50%), Gaps = 7/75 (9%)
Query: 106 VGKGALECAVCLNEF-EDDETLRLI--PKCDHVFHPECIDAWLESHTTCPVCRSNLASEP 162
+G G + C +C++ + E + RLI +C HVF +C+ L++ TCP CR + +
Sbjct: 3 MGSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHK- 61
Query: 163 GETTPQPSELGSSEV 177
P +GS V
Sbjct: 62 ---RYHPIYIGSGTV 73
>pdb|2ECL|A Chain A, Solution Structure Of The Ring Domain Of The Human
Ring-Box Protein 2
Length = 81
Score = 37.4 bits (85), Expect = 0.012, Method: Composition-based stats.
Identities = 12/45 (26%), Positives = 26/45 (57%)
Query: 113 CAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSN 157
C C E + ++ + + +C+H FH C+ W++ + CP+C+ +
Sbjct: 29 CLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQD 73
>pdb|3NG2|A Chain A, Crystal Structure Of The Rnf4 Ring Domain Dimer
pdb|3NG2|B Chain B, Crystal Structure Of The Rnf4 Ring Domain Dimer
Length = 71
Score = 36.6 bits (83), Expect = 0.018, Method: Composition-based stats.
Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 3/53 (5%)
Query: 109 GALECAVCLNEF-EDDETLRLI--PKCDHVFHPECIDAWLESHTTCPVCRSNL 158
G + C +C++ + E + RLI +C HVF +C+ L++ TCP CR +
Sbjct: 9 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKI 61
>pdb|2EA6|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring
Finger Protein 4
Length = 69
Score = 36.2 bits (82), Expect = 0.028, Method: Composition-based stats.
Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 3/53 (5%)
Query: 109 GALECAVCLNEF-EDDETLRLI--PKCDHVFHPECIDAWLESHTTCPVCRSNL 158
G + C +C++ + E + RLI +C HVF +C+ L++ TCP CR +
Sbjct: 14 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKI 66
>pdb|2XEU|A Chain A, Ring Domain
Length = 64
Score = 35.0 bits (79), Expect = 0.054, Method: Composition-based stats.
Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 3/51 (5%)
Query: 111 LECAVCLNEF-EDDETLRLI--PKCDHVFHPECIDAWLESHTTCPVCRSNL 158
+ C +C++ + E + RLI +C HVF +C+ L++ TCP CR +
Sbjct: 4 VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKI 54
>pdb|3DQV|R Chain R, Structural Insights Into Nedd8 Activation Of Cullin-Ring
Ligases: Conformational Control Of Conjugation
pdb|3DQV|Y Chain Y, Structural Insights Into Nedd8 Activation Of Cullin-Ring
Ligases: Conformational Control Of Conjugation
Length = 106
Score = 35.0 bits (79), Expect = 0.059, Method: Composition-based stats.
Identities = 16/55 (29%), Positives = 22/55 (40%), Gaps = 14/55 (25%)
Query: 113 CAVCLNEFED--------------DETLRLIPKCDHVFHPECIDAWLESHTTCPV 153
CA+C N D +E C+H FH CI WL++ CP+
Sbjct: 40 CAICRNHIXDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPL 94
>pdb|2Y43|A Chain A, Rad18 Ubiquitin Ligase Ring Domain Structure
pdb|2Y43|B Chain B, Rad18 Ubiquitin Ligase Ring Domain Structure
Length = 99
Score = 34.7 bits (78), Expect = 0.073, Method: Composition-based stats.
Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 3/44 (6%)
Query: 111 LECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVC 154
L C +C FE +IP+C H + CI +L T CP C
Sbjct: 23 LRCGIC---FEYFNIAMIIPQCSHNYCSLCIRKFLSYKTQCPTC 63
>pdb|3DPL|R Chain R, Structural Insights Into Nedd8 Activation Of Cullin-Ring
Ligases: Conformational Control Of Conjugation.
pdb|3RTR|B Chain B, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|3RTR|D Chain D, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|3RTR|F Chain F, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|3RTR|H Chain H, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|4F52|B Chain B, Structure Of A Glomulin-Rbx1-Cul1 Complex
pdb|4F52|D Chain D, Structure Of A Glomulin-Rbx1-Cul1 Complex
Length = 106
Score = 34.7 bits (78), Expect = 0.075, Method: Composition-based stats.
Identities = 16/55 (29%), Positives = 22/55 (40%), Gaps = 14/55 (25%)
Query: 113 CAVCLNEFED--------------DETLRLIPKCDHVFHPECIDAWLESHTTCPV 153
CA+C N D +E C+H FH CI WL++ CP+
Sbjct: 40 CAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPL 94
>pdb|1LDJ|B Chain B, Structure Of The Cul1-rbx1-skp1-f Boxskp2 Scf Ubiquitin
Ligase Complex
pdb|1LDK|C Chain C, Structure Of The Cul1-Rbx1-Skp1-F Boxskp2 Scf Ubiquitin
Ligase Complex
Length = 90
Score = 34.7 bits (78), Expect = 0.075, Method: Composition-based stats.
Identities = 16/55 (29%), Positives = 22/55 (40%), Gaps = 14/55 (25%)
Query: 113 CAVCLNEFED--------------DETLRLIPKCDHVFHPECIDAWLESHTTCPV 153
CA+C N D +E C+H FH CI WL++ CP+
Sbjct: 24 CAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPL 78
>pdb|4A0C|D Chain D, Structure Of The Cand1-Cul4b-Rbx1 Complex
pdb|4A0C|F Chain F, Structure Of The Cand1-Cul4b-Rbx1 Complex
pdb|4A0L|F Chain F, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|I Chain I, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 98
Score = 34.7 bits (78), Expect = 0.075, Method: Composition-based stats.
Identities = 16/55 (29%), Positives = 22/55 (40%), Gaps = 14/55 (25%)
Query: 113 CAVCLNEFED--------------DETLRLIPKCDHVFHPECIDAWLESHTTCPV 153
CA+C N D +E C+H FH CI WL++ CP+
Sbjct: 32 CAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPL 86
>pdb|2LGV|A Chain A, Rbx1
Length = 100
Score = 33.9 bits (76), Expect = 0.12, Method: Composition-based stats.
Identities = 16/55 (29%), Positives = 22/55 (40%), Gaps = 14/55 (25%)
Query: 113 CAVCLNEFED--------------DETLRLIPKCDHVFHPECIDAWLESHTTCPV 153
CA+C N D +E C+H FH CI WL++ CP+
Sbjct: 34 CAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPL 88
>pdb|2H0D|A Chain A, Structure Of A Bmi-1-Ring1b Polycomb Group Ubiquitin
Ligase Complex
Length = 97
Score = 33.5 bits (75), Expect = 0.17, Method: Composition-based stats.
Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
Query: 111 LECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVC 154
L C +C F D T I +C H F CI +LE+ CP+C
Sbjct: 12 LMCVLCGGYFIDATT---IIECLHSFCKTCIVRYLETSKYCPIC 52
>pdb|3RPG|B Chain B, Bmi1RING1B-Ubch5c Complex Structure
Length = 117
Score = 33.1 bits (74), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
Query: 111 LECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVC 154
L C +C F D T I +C H F CI +LE+ CP+C
Sbjct: 16 LMCVLCGGYFIDATT---IIECLHSFCKTCIVRYLETSKYCPIC 56
>pdb|2CKL|A Chain A, Ring1b-Bmi1 E3 Catalytic Domain Structure
Length = 108
Score = 32.7 bits (73), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
Query: 111 LECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVC 154
L C +C F D T I +C H F CI +LE+ CP+C
Sbjct: 16 LMCVLCGGYFIDATT---IIECLHSFCKTCIVRYLETSKYCPIC 56
>pdb|3RPG|C Chain C, Bmi1RING1B-Ubch5c Complex Structure
Length = 121
Score = 32.7 bits (73), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 4/52 (7%)
Query: 111 LECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLES-HTTCPVCRSNLASE 161
L C +CL+ ++ T + +C H F +CI L S + CP CR L S+
Sbjct: 54 LMCPICLDMLKNTMTTK---ECLHRFCADCIITALRSGNKECPTCRKKLVSK 102
>pdb|4A0K|B Chain B, Structure Of Ddb1-Ddb2-Cul4a-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 117
Score = 32.3 bits (72), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 22/55 (40%), Gaps = 14/55 (25%)
Query: 113 CAVCLNEFED--------------DETLRLIPKCDHVFHPECIDAWLESHTTCPV 153
CA+C N D +E C+H FH CI WL++ CP+
Sbjct: 51 CAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPL 105
>pdb|2CKL|B Chain B, Ring1b-Bmi1 E3 Catalytic Domain Structure
Length = 165
Score = 32.3 bits (72), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 4/52 (7%)
Query: 111 LECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLES-HTTCPVCRSNLASE 161
L C +CL+ ++ T + +C H F +CI L S + CP CR L S+
Sbjct: 55 LMCPICLDMLKNTMTTK---ECLHRFCADCIITALRSGNKECPTCRKKLVSK 103
>pdb|2ECM|A Chain A, Solution Structure Of The Ring Domain Of The Ring Finger
And Chy Zinc Finger Domain-Containing Protein 1 From Mus
Musculus
Length = 55
Score = 32.3 bits (72), Expect = 0.37, Method: Composition-based stats.
Identities = 12/46 (26%), Positives = 21/46 (45%)
Query: 109 GALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVC 154
G+ C +CL + + + C H+ H C + L+ CP+C
Sbjct: 4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLC 49
>pdb|3VGO|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
pdb|3VGO|B Chain B, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
pdb|3VGO|C Chain C, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
Length = 394
Score = 32.3 bits (72), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 6/52 (11%)
Query: 113 CAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESH-TTCPVCRSNL-ASEP 162
C +C E+D+ +++ P C H+ C+ AW ES CP CR + +EP
Sbjct: 341 CKICA---ENDKDVKIEP-CGHLMCTSCLTAWQESDGQGCPFCRCEIKGTEP 388
>pdb|1U6G|B Chain B, Crystal Structure Of The Cand1-Cul1-Roc1 Complex
pdb|2HYE|D Chain D, Crystal Structure Of The Ddb1-cul4a-rbx1-sv5v Complex
Length = 108
Score = 32.0 bits (71), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 22/55 (40%), Gaps = 14/55 (25%)
Query: 113 CAVCLNEFED--------------DETLRLIPKCDHVFHPECIDAWLESHTTCPV 153
CA+C N D +E C+H FH CI WL++ CP+
Sbjct: 42 CAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPL 96
>pdb|2LDR|A Chain A, Solution Structure Of Helix-Ring Domain Of Cbl-B In The
Tyr363 Phosphorylated Form
Length = 82
Score = 32.0 bits (71), Expect = 0.51, Method: Composition-based stats.
Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 6/52 (11%)
Query: 113 CAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESH-TTCPVCRSNL-ASEP 162
C +C E+D+ +++ P C H+ C+ AW ES CP CR + +EP
Sbjct: 29 CKICA---ENDKDVKIEP-CGHLMCTSCLTAWQESDGQGCPFCRCEIKGTEP 76
>pdb|1FBV|A Chain A, Structure Of A Cbl-Ubch7 Complex: Ring Domain Function In
Ubiquitin-Protein Ligases
Length = 388
Score = 31.2 bits (69), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 6/52 (11%)
Query: 113 CAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESH-TTCPVCRSNL-ASEP 162
C +C E+D+ +++ P C H+ C+ +W ES CP CR + +EP
Sbjct: 335 CKICA---ENDKDVKIEP-CGHLMCTSCLTSWQESEGQGCPFCRCEIKGTEP 382
>pdb|4A4C|A Chain A, Structure Of Phosphotyr371-C-Cbl-Ubch5b-Zap-70 Complex
Length = 391
Score = 31.2 bits (69), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 6/52 (11%)
Query: 113 CAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESH-TTCPVCRSNL-ASEP 162
C +C E+D+ +++ P C H+ C+ +W ES CP CR + +EP
Sbjct: 337 CKICA---ENDKDVKIEP-CGHLMCTSCLTSWQESEGQGCPFCRCEIKGTEP 384
>pdb|4A4B|A Chain A, Structure Of Modified Phosphotyr371-C-Cbl-Ubch5b-Zap-70
Complex
Length = 391
Score = 31.2 bits (69), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 6/52 (11%)
Query: 113 CAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESH-TTCPVCRSNL-ASEP 162
C +C E+D+ +++ P C H+ C+ +W ES CP CR + +EP
Sbjct: 337 CKICA---ENDKDVKIEP-CGHLMCTSCLTSWQESEGQGCPFCRCEIKGTEP 384
>pdb|2Y1M|A Chain A, Structure Of Native C-Cbl
pdb|2Y1M|B Chain B, Structure Of Native C-Cbl
pdb|2Y1M|C Chain C, Structure Of Native C-Cbl
pdb|2Y1M|D Chain D, Structure Of Native C-Cbl
pdb|2Y1M|E Chain E, Structure Of Native C-Cbl
pdb|2Y1M|F Chain F, Structure Of Native C-Cbl
pdb|2Y1N|A Chain A, Structure Of C-Cbl-Zap-70 Peptide Complex
pdb|2Y1N|C Chain C, Structure Of C-Cbl-Zap-70 Peptide Complex
Length = 389
Score = 31.2 bits (69), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 6/52 (11%)
Query: 113 CAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESH-TTCPVCRSNL-ASEP 162
C +C E+D+ +++ P C H+ C+ +W ES CP CR + +EP
Sbjct: 335 CKICA---ENDKDVKIEP-CGHLMCTSCLTSWQESEGQGCPFCRCEIKGTEP 382
>pdb|2H0D|B Chain B, Structure Of A Bmi-1-Ring1b Polycomb Group Ubiquitin
Ligase Complex
Length = 100
Score = 30.8 bits (68), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 4/52 (7%)
Query: 111 LECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLES-HTTCPVCRSNLASE 161
L C +CL+ ++ T + +C H F +CI L S + CP CR L S+
Sbjct: 35 LMCPICLDMLKNTMTTK---ECLHRFCADCIITALRSGNKECPTCRKKLVSK 83
>pdb|1CHC|A Chain A, Structure Of The C3hc4 Domain By 1h-Nuclear Magnetic
Resonance Spectroscopy; A New Structural Class Of Zinc-
Finger
Length = 68
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 3/46 (6%)
Query: 110 ALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCR 155
A C +CL ED + C H F CI W+ + TCP+C+
Sbjct: 5 AERCPICL---EDPSNYSMALPCLHAFCYVCITRWIRQNPTCPLCK 47
>pdb|2K4D|A Chain A, E2-C-Cbl Recognition Is Necessary But Not Sufficient For
Ubiquitination Activity
Length = 83
Score = 28.9 bits (63), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 6/52 (11%)
Query: 113 CAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESH-TTCPVCRSNL-ASEP 162
C +C E+D+ +++ P C H+ C+ +W ES CP CR + +EP
Sbjct: 27 CKICA---ENDKDVKIEP-CGHLMCTSCLTSWQESEGQGCPFCRCEIKGTEP 74
>pdb|4A49|A Chain A, Structure Of Phosphotyr371-C-Cbl-Ubch5b Complex
Length = 84
Score = 28.9 bits (63), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 6/52 (11%)
Query: 113 CAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESH-TTCPVCRSNL-ASEP 162
C +C E+D+ +++ P C H+ C+ +W ES CP CR + +EP
Sbjct: 30 CKICA---ENDKDVKIEP-CGHLMCTSCLTSWQESEGQGCPFCRCEIKGTEP 77
>pdb|2CT2|A Chain A, Solution Structure Of The Ring Domain Of The Tripartite
Motif Protein 32
Length = 88
Score = 28.5 bits (62), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 13/48 (27%), Positives = 22/48 (45%), Gaps = 3/48 (6%)
Query: 110 ALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTT---CPVC 154
LEC +C+ F +++ + C H +C++ L S CP C
Sbjct: 15 VLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFC 62
>pdb|2JRJ|A Chain A, Solution Structure Of The Human Pirh2 Ring-H2 Domain.
Northeast Structural Genomics Consortium Target Ht2b
Length = 52
Score = 28.1 bits (61), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 11/42 (26%), Positives = 19/42 (45%)
Query: 113 CAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVC 154
C +CL + + + C H+ H C + L+ CP+C
Sbjct: 8 CPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLC 49
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.132 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,622,432
Number of Sequences: 62578
Number of extensions: 251729
Number of successful extensions: 508
Number of sequences better than 100.0: 57
Number of HSP's better than 100.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 30
Number of HSP's that attempted gapping in prelim test: 467
Number of HSP's gapped (non-prelim): 66
length of query: 320
length of database: 14,973,337
effective HSP length: 99
effective length of query: 221
effective length of database: 8,778,115
effective search space: 1939963415
effective search space used: 1939963415
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.3 bits)