Query 048010
Match_columns 320
No_of_seqs 338 out of 2166
Neff 6.4
Searched_HMMs 46136
Date Fri Mar 29 05:24:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048010.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048010hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4628 Predicted E3 ubiquitin 99.8 4.2E-19 9.1E-24 170.1 7.9 79 81-163 203-282 (348)
2 PF13639 zf-RING_2: Ring finge 99.5 4.6E-15 1E-19 102.0 2.9 44 111-155 1-44 (44)
3 COG5243 HRD1 HRD ubiquitin lig 99.4 4.2E-13 9.2E-18 128.2 6.7 70 85-160 267-346 (491)
4 PHA02929 N1R/p28-like protein; 99.3 1.3E-12 2.8E-17 120.4 5.5 77 82-159 147-227 (238)
5 PF12678 zf-rbx1: RING-H2 zinc 99.3 7.8E-13 1.7E-17 100.9 2.8 46 109-155 18-73 (73)
6 COG5540 RING-finger-containing 99.3 3.1E-12 6.8E-17 119.5 3.8 51 109-160 322-373 (374)
7 cd00162 RING RING-finger (Real 98.9 6.8E-10 1.5E-14 74.5 3.5 44 112-158 1-45 (45)
8 PF13920 zf-C3HC4_3: Zinc fing 98.9 1E-09 2.3E-14 77.3 3.8 46 110-159 2-48 (50)
9 PLN03208 E3 ubiquitin-protein 98.9 1.2E-09 2.6E-14 97.4 4.0 50 108-161 16-81 (193)
10 KOG0317 Predicted E3 ubiquitin 98.9 1.1E-09 2.4E-14 102.1 3.5 50 108-161 237-286 (293)
11 KOG0320 Predicted E3 ubiquitin 98.9 1.1E-09 2.5E-14 95.7 3.2 52 108-161 129-180 (187)
12 KOG0802 E3 ubiquitin ligase [P 98.9 1.2E-09 2.6E-14 112.2 3.8 52 108-160 289-342 (543)
13 PF13923 zf-C3HC4_2: Zinc fing 98.9 1.9E-09 4.1E-14 72.1 3.3 39 113-154 1-39 (39)
14 PF12861 zf-Apc11: Anaphase-pr 98.9 1.9E-09 4.1E-14 84.0 3.6 51 109-159 20-82 (85)
15 PHA02926 zinc finger-like prot 98.8 2.6E-09 5.6E-14 96.6 3.3 51 109-159 169-230 (242)
16 COG5194 APC11 Component of SCF 98.8 4E-09 8.7E-14 80.6 2.4 52 110-161 20-83 (88)
17 KOG0823 Predicted E3 ubiquitin 98.8 5E-09 1.1E-13 95.2 3.4 53 107-163 44-99 (230)
18 PF14634 zf-RING_5: zinc-RING 98.7 1.2E-08 2.7E-13 70.0 3.1 44 112-156 1-44 (44)
19 PF00097 zf-C3HC4: Zinc finger 98.6 1.6E-08 3.6E-13 67.9 2.7 39 113-154 1-41 (41)
20 smart00184 RING Ring finger. E 98.6 2.5E-08 5.4E-13 64.5 3.3 38 113-154 1-39 (39)
21 smart00504 Ubox Modified RING 98.6 5.5E-08 1.2E-12 71.0 4.0 45 111-159 2-46 (63)
22 PF15227 zf-C3HC4_4: zinc fing 98.5 5E-08 1.1E-12 66.6 2.0 38 113-154 1-42 (42)
23 KOG2930 SCF ubiquitin ligase, 98.5 5.3E-08 1.1E-12 78.0 1.3 69 92-160 28-109 (114)
24 KOG1493 Anaphase-promoting com 98.4 3E-08 6.5E-13 75.3 -1.1 52 108-159 18-81 (84)
25 TIGR00599 rad18 DNA repair pro 98.4 2.4E-07 5.1E-12 91.5 3.5 49 108-160 24-72 (397)
26 KOG1734 Predicted RING-contain 98.4 1.1E-07 2.4E-12 88.1 1.1 54 107-161 221-283 (328)
27 KOG0828 Predicted E3 ubiquitin 98.3 8.3E-07 1.8E-11 88.2 5.1 49 110-159 571-634 (636)
28 COG5574 PEX10 RING-finger-cont 98.3 4.6E-07 1E-11 83.9 2.7 50 109-162 214-265 (271)
29 smart00744 RINGv The RING-vari 98.2 1.3E-06 2.7E-11 61.7 3.1 42 112-155 1-49 (49)
30 COG5219 Uncharacterized conser 98.1 8.1E-07 1.8E-11 93.7 0.9 52 108-159 1467-1523(1525)
31 KOG2164 Predicted E3 ubiquitin 98.1 1.9E-06 4.1E-11 86.2 3.1 51 110-164 186-241 (513)
32 PF13445 zf-RING_UBOX: RING-ty 98.1 2.9E-06 6.3E-11 58.2 2.9 38 113-152 1-43 (43)
33 PF11793 FANCL_C: FANCL C-term 98.0 1.1E-06 2.3E-11 66.6 -0.1 49 111-159 3-66 (70)
34 KOG2177 Predicted E3 ubiquitin 98.0 2.3E-06 5.1E-11 78.0 1.6 44 108-155 11-54 (386)
35 PF04564 U-box: U-box domain; 98.0 6.4E-06 1.4E-10 62.6 3.3 48 110-161 4-52 (73)
36 TIGR00570 cdk7 CDK-activating 97.9 6.1E-06 1.3E-10 78.8 3.6 51 110-161 3-56 (309)
37 COG5432 RAD18 RING-finger-cont 97.9 4.5E-06 9.8E-11 78.3 1.9 47 109-159 24-70 (391)
38 KOG0287 Postreplication repair 97.9 3.5E-06 7.6E-11 80.5 1.1 48 109-160 22-69 (442)
39 KOG0827 Predicted E3 ubiquitin 97.9 6.2E-06 1.3E-10 80.0 1.9 46 111-156 5-53 (465)
40 KOG0804 Cytoplasmic Zn-finger 97.8 7.3E-06 1.6E-10 80.9 1.8 48 109-159 174-222 (493)
41 KOG4265 Predicted E3 ubiquitin 97.7 2.2E-05 4.7E-10 75.8 3.2 49 108-160 288-337 (349)
42 KOG1039 Predicted E3 ubiquitin 97.7 1.8E-05 3.9E-10 76.9 1.9 51 109-159 160-221 (344)
43 KOG3970 Predicted E3 ubiquitin 97.6 0.00062 1.3E-08 62.1 10.6 54 108-163 48-109 (299)
44 KOG0825 PHD Zn-finger protein 97.6 1.4E-05 3E-10 83.3 -0.2 48 111-159 124-171 (1134)
45 PF14835 zf-RING_6: zf-RING of 97.5 1.8E-05 3.9E-10 58.6 -0.0 47 111-162 8-54 (65)
46 KOG0311 Predicted E3 ubiquitin 97.5 1.6E-05 3.4E-10 76.5 -1.4 50 109-161 42-92 (381)
47 KOG4445 Uncharacterized conser 97.4 5.5E-05 1.2E-09 71.4 1.5 51 110-161 115-188 (368)
48 KOG1785 Tyrosine kinase negati 97.4 9E-05 1.9E-09 72.4 2.9 45 112-160 371-417 (563)
49 KOG1645 RING-finger-containing 97.4 0.0001 2.2E-09 72.2 3.2 49 110-158 4-55 (463)
50 KOG4172 Predicted E3 ubiquitin 97.4 5.4E-05 1.2E-09 54.2 0.6 46 110-159 7-54 (62)
51 KOG0824 Predicted E3 ubiquitin 97.2 0.00017 3.7E-09 68.2 2.1 48 111-162 8-56 (324)
52 KOG1941 Acetylcholine receptor 97.2 0.00019 4.2E-09 69.9 2.2 46 110-156 365-413 (518)
53 KOG0978 E3 ubiquitin ligase in 97.1 0.00015 3.2E-09 75.9 0.6 49 109-161 642-691 (698)
54 KOG0297 TNF receptor-associate 96.7 0.00069 1.5E-08 67.3 1.9 50 109-161 20-69 (391)
55 PF05883 Baculo_RING: Baculovi 96.7 0.00067 1.5E-08 57.4 1.5 35 110-145 26-66 (134)
56 PF11789 zf-Nse: Zinc-finger o 96.6 0.0011 2.3E-08 48.2 1.7 42 109-153 10-53 (57)
57 KOG4159 Predicted E3 ubiquitin 96.4 0.0017 3.7E-08 64.4 2.4 49 108-160 82-130 (398)
58 KOG0801 Predicted E3 ubiquitin 96.3 0.0013 2.7E-08 57.3 0.7 29 109-138 176-204 (205)
59 KOG0826 Predicted E3 ubiquitin 96.3 0.0055 1.2E-07 58.8 4.8 47 109-158 299-345 (357)
60 KOG1428 Inhibitor of type V ad 96.3 0.0029 6.2E-08 70.1 3.1 52 107-159 3483-3544(3738)
61 PF12906 RINGv: RING-variant d 96.1 0.0037 8E-08 43.6 2.2 40 113-154 1-47 (47)
62 KOG1002 Nucleotide excision re 96.0 0.0036 7.8E-08 63.4 2.1 50 108-161 534-588 (791)
63 KOG1952 Transcription factor N 96.0 0.0031 6.7E-08 66.9 1.7 51 106-156 187-244 (950)
64 KOG3039 Uncharacterized conser 95.9 0.0074 1.6E-07 55.9 3.5 53 109-161 220-272 (303)
65 COG5222 Uncharacterized conser 95.8 0.0065 1.4E-07 57.7 3.0 47 111-160 275-323 (427)
66 PHA02862 5L protein; Provision 95.8 0.0061 1.3E-07 52.2 2.6 46 111-161 3-55 (156)
67 KOG2879 Predicted E3 ubiquitin 95.8 0.0076 1.7E-07 56.6 3.4 51 106-159 235-287 (298)
68 KOG1814 Predicted E3 ubiquitin 95.8 0.0053 1.1E-07 60.5 2.3 47 109-156 183-237 (445)
69 KOG2660 Locus-specific chromos 95.6 0.0032 7E-08 60.4 -0.1 51 108-161 13-63 (331)
70 PF10367 Vps39_2: Vacuolar sor 95.6 0.0063 1.4E-07 48.5 1.6 32 109-142 77-108 (109)
71 KOG1571 Predicted E3 ubiquitin 95.5 0.0086 1.9E-07 58.2 2.5 44 109-159 304-347 (355)
72 PHA03096 p28-like protein; Pro 95.4 0.0074 1.6E-07 57.5 1.8 46 111-156 179-231 (284)
73 PHA02825 LAP/PHD finger-like p 95.4 0.012 2.6E-07 51.1 2.9 49 109-161 7-61 (162)
74 PF14570 zf-RING_4: RING/Ubox 95.3 0.013 2.9E-07 41.1 2.4 45 113-158 1-47 (48)
75 PF04641 Rtf2: Rtf2 RING-finge 95.0 0.026 5.6E-07 53.0 4.2 54 107-161 110-163 (260)
76 COG5152 Uncharacterized conser 94.9 0.013 2.8E-07 52.7 1.7 45 110-158 196-240 (259)
77 KOG4692 Predicted E3 ubiquitin 94.6 0.027 5.8E-07 54.7 3.1 48 108-159 420-467 (489)
78 KOG0827 Predicted E3 ubiquitin 94.5 0.0031 6.7E-08 61.7 -3.7 48 111-159 197-245 (465)
79 KOG2114 Vacuolar assembly/sort 94.1 0.024 5.2E-07 60.4 1.7 42 111-158 841-882 (933)
80 KOG4739 Uncharacterized protei 94.1 0.018 4E-07 53.1 0.7 44 112-159 5-48 (233)
81 KOG4275 Predicted E3 ubiquitin 93.8 0.015 3.2E-07 55.2 -0.5 42 110-159 300-342 (350)
82 PF08746 zf-RING-like: RING-li 93.7 0.034 7.3E-07 38.0 1.3 41 113-154 1-43 (43)
83 KOG4185 Predicted E3 ubiquitin 93.7 0.037 8.1E-07 52.5 2.0 47 111-158 4-54 (296)
84 KOG1813 Predicted E3 ubiquitin 93.4 0.035 7.5E-07 52.8 1.2 46 110-159 241-286 (313)
85 COG5175 MOT2 Transcriptional r 93.0 0.064 1.4E-06 51.9 2.5 56 109-164 13-69 (480)
86 KOG1940 Zn-finger protein [Gen 92.9 0.053 1.2E-06 51.4 1.7 46 110-156 158-204 (276)
87 PF10272 Tmpp129: Putative tra 91.9 0.25 5.3E-06 48.7 5.0 29 132-160 311-352 (358)
88 KOG0309 Conserved WD40 repeat- 91.1 0.12 2.6E-06 54.7 2.0 23 131-153 1047-1069(1081)
89 COG5236 Uncharacterized conser 91.1 0.25 5.4E-06 48.1 4.0 65 89-159 42-108 (493)
90 PF14447 Prok-RING_4: Prokaryo 90.9 0.13 2.7E-06 37.1 1.4 43 112-160 9-51 (55)
91 KOG3268 Predicted E3 ubiquitin 90.9 0.17 3.7E-06 45.0 2.4 31 131-161 189-230 (234)
92 KOG1001 Helicase-like transcri 90.9 0.1 2.2E-06 55.4 1.3 47 111-162 455-503 (674)
93 KOG2932 E3 ubiquitin ligase in 90.7 0.096 2.1E-06 50.2 0.7 41 113-158 93-133 (389)
94 PF03869 Arc: Arc-like DNA bin 89.6 0.27 5.8E-06 34.7 2.1 19 250-268 2-20 (50)
95 PF14446 Prok-RING_1: Prokaryo 89.0 0.52 1.1E-05 33.9 3.3 40 110-153 5-44 (54)
96 KOG2034 Vacuolar sorting prote 88.9 0.21 4.5E-06 53.8 1.7 36 108-145 815-850 (911)
97 KOG0298 DEAD box-containing he 88.9 0.15 3.2E-06 56.8 0.6 45 111-158 1154-1198(1394)
98 COG5183 SSM4 Protein involved 88.7 0.29 6.2E-06 52.3 2.5 51 109-159 11-66 (1175)
99 KOG1609 Protein involved in mR 88.4 0.25 5.5E-06 46.7 1.8 50 110-160 78-135 (323)
100 PF03854 zf-P11: P-11 zinc fin 87.3 0.25 5.4E-06 34.6 0.7 43 112-160 4-47 (50)
101 KOG0802 E3 ubiquitin ligase [P 86.1 0.39 8.5E-06 49.8 1.8 50 105-162 474-523 (543)
102 PF07800 DUF1644: Protein of u 86.0 0.64 1.4E-05 40.6 2.7 37 110-146 2-47 (162)
103 KOG3053 Uncharacterized conser 85.4 0.37 8E-06 45.2 1.0 51 109-159 19-82 (293)
104 KOG2817 Predicted E3 ubiquitin 84.9 3 6.5E-05 41.4 7.1 45 109-154 333-380 (394)
105 KOG1812 Predicted E3 ubiquitin 84.5 0.38 8.3E-06 47.8 0.8 39 109-148 145-184 (384)
106 KOG3002 Zn finger protein [Gen 83.9 0.75 1.6E-05 44.3 2.5 45 109-159 47-91 (299)
107 PF07213 DAP10: DAP10 membrane 83.5 4 8.7E-05 31.6 5.8 51 2-57 7-59 (79)
108 KOG3800 Predicted E3 ubiquitin 81.4 1.2 2.6E-05 42.4 2.7 48 112-159 2-51 (300)
109 PF01102 Glycophorin_A: Glycop 80.6 2.7 5.8E-05 35.3 4.3 33 31-63 63-95 (122)
110 KOG0269 WD40 repeat-containing 79.6 1.5 3.4E-05 46.6 3.0 40 112-153 781-820 (839)
111 KOG3899 Uncharacterized conser 79.0 1 2.2E-05 43.0 1.4 30 132-161 325-367 (381)
112 PF05290 Baculo_IE-1: Baculovi 79.0 1.4 3E-05 37.5 2.0 52 109-160 79-133 (140)
113 KOG3113 Uncharacterized conser 78.7 2.1 4.5E-05 40.2 3.2 52 109-162 110-161 (293)
114 PHA01513 mnt Mnt 77.3 2.1 4.5E-05 33.5 2.4 43 251-293 4-54 (82)
115 smart00132 LIM Zinc-binding do 77.3 2.2 4.8E-05 26.9 2.3 37 113-159 2-38 (39)
116 COG5220 TFB3 Cdk activating ki 76.7 1.2 2.5E-05 41.6 1.0 47 110-156 10-61 (314)
117 KOG4362 Transcriptional regula 75.5 0.8 1.7E-05 48.5 -0.4 46 110-159 21-69 (684)
118 KOG0825 PHD Zn-finger protein 74.5 1.6 3.6E-05 46.7 1.6 50 109-158 95-153 (1134)
119 PF02439 Adeno_E3_CR2: Adenovi 74.0 7.4 0.00016 26.0 4.0 23 35-57 6-28 (38)
120 PF13901 DUF4206: Domain of un 73.5 2.5 5.4E-05 38.2 2.4 42 109-156 151-197 (202)
121 KOG3161 Predicted E3 ubiquitin 70.5 1.6 3.4E-05 45.9 0.4 43 111-156 12-54 (861)
122 KOG3005 GIY-YIG type nuclease 68.1 3.5 7.6E-05 39.0 2.1 49 110-158 182-242 (276)
123 COG5109 Uncharacterized conser 67.5 13 0.00027 36.2 5.7 95 32-154 285-382 (396)
124 KOG1829 Uncharacterized conser 67.3 2 4.4E-05 44.8 0.4 44 109-156 510-558 (580)
125 KOG4718 Non-SMC (structural ma 65.9 3.2 7E-05 37.9 1.4 43 111-156 182-224 (235)
126 PHA02849 putative transmembran 64.9 13 0.00029 28.6 4.3 35 26-60 7-41 (82)
127 PF15102 TMEM154: TMEM154 prot 64.4 3.1 6.8E-05 35.9 1.0 9 139-147 128-136 (146)
128 KOG3842 Adaptor protein Pellin 63.2 7.1 0.00015 37.9 3.2 52 108-160 339-415 (429)
129 PF00412 LIM: LIM domain; Int 62.5 6.8 0.00015 27.3 2.3 39 113-161 1-39 (58)
130 TIGR00622 ssl1 transcription f 61.8 9 0.00019 31.7 3.1 70 85-155 31-110 (112)
131 KOG4367 Predicted Zn-finger pr 60.4 5 0.00011 40.5 1.6 33 109-145 3-35 (699)
132 PF10571 UPF0547: Uncharacteri 60.0 4.4 9.6E-05 24.7 0.8 23 112-136 2-24 (26)
133 PF02891 zf-MIZ: MIZ/SP-RING z 59.2 6 0.00013 27.7 1.5 43 111-157 3-50 (50)
134 smart00249 PHD PHD zinc finger 58.9 5.7 0.00012 25.9 1.3 30 113-143 2-31 (47)
135 KOG1815 Predicted E3 ubiquitin 58.1 5.7 0.00012 40.2 1.7 37 108-147 68-104 (444)
136 PLN02189 cellulose synthase 58.1 15 0.00032 41.0 4.9 52 109-160 33-88 (1040)
137 KOG2066 Vacuolar assembly/sort 58.1 4.1 8.9E-05 43.8 0.7 42 111-154 785-830 (846)
138 PF06906 DUF1272: Protein of u 57.9 14 0.00031 26.8 3.2 46 112-162 7-55 (57)
139 KOG2068 MOT2 transcription fac 56.5 7.3 0.00016 37.9 2.0 49 111-159 250-298 (327)
140 PF07975 C1_4: TFIIH C1-like d 55.3 9.4 0.0002 27.1 1.9 42 113-155 2-50 (51)
141 KOG1100 Predicted E3 ubiquitin 55.0 6.2 0.00013 36.0 1.2 39 113-159 161-200 (207)
142 PF13719 zinc_ribbon_5: zinc-r 54.8 7.9 0.00017 25.3 1.4 26 112-137 4-36 (37)
143 PF05534 HicB: HicB family; I 54.5 8.4 0.00018 27.2 1.6 17 253-269 18-34 (51)
144 PF02060 ISK_Channel: Slow vol 54.4 27 0.00057 29.5 4.7 28 34-61 44-71 (129)
145 PF07010 Endomucin: Endomucin; 54.2 22 0.00048 33.0 4.6 22 31-52 190-211 (259)
146 PF00628 PHD: PHD-finger; Int 54.2 5.1 0.00011 27.4 0.4 43 113-156 2-50 (51)
147 PF15050 SCIMP: SCIMP protein 53.9 18 0.00039 30.3 3.7 24 28-52 5-28 (133)
148 PF14654 Epiglycanin_C: Mucin, 53.1 40 0.00087 27.2 5.3 30 31-61 18-47 (106)
149 PF10717 ODV-E18: Occlusion-de 51.7 18 0.00038 28.3 3.1 10 28-37 19-28 (85)
150 PLN02436 cellulose synthase A 51.4 22 0.00048 39.8 4.9 51 110-160 36-90 (1094)
151 PF13717 zinc_ribbon_4: zinc-r 50.5 8.3 0.00018 25.2 0.9 26 112-137 4-36 (36)
152 PF04710 Pellino: Pellino; In 48.8 5.7 0.00012 39.6 0.0 51 110-161 328-403 (416)
153 PF01402 RHH_1: Ribbon-helix-h 48.2 7.6 0.00016 25.1 0.5 25 254-278 1-27 (39)
154 PF11023 DUF2614: Protein of u 47.8 60 0.0013 26.9 5.7 27 131-163 74-100 (114)
155 KOG3579 Predicted E3 ubiquitin 47.1 10 0.00022 36.3 1.3 39 110-148 268-306 (352)
156 PHA02657 hypothetical protein; 46.9 24 0.00052 27.8 3.1 31 27-59 20-50 (95)
157 KOG1812 Predicted E3 ubiquitin 45.8 12 0.00026 37.3 1.7 71 83-154 278-351 (384)
158 PF01363 FYVE: FYVE zinc finge 45.2 8.8 0.00019 28.1 0.5 37 109-145 8-44 (69)
159 PRK05978 hypothetical protein; 45.2 15 0.00031 31.9 1.9 28 133-165 42-69 (148)
160 cd00065 FYVE FYVE domain; Zinc 43.6 17 0.00037 25.3 1.8 35 111-145 3-37 (57)
161 KOG2041 WD40 repeat protein [G 43.3 16 0.00034 39.4 2.2 48 108-159 1129-1185(1189)
162 KOG2807 RNA polymerase II tran 42.8 23 0.0005 34.6 3.0 71 84-156 305-375 (378)
163 PF04710 Pellino: Pellino; In 42.8 11 0.00023 37.7 0.8 67 88-158 255-338 (416)
164 PF02009 Rifin_STEVOR: Rifin/s 42.7 28 0.00061 33.6 3.6 11 48-58 271-281 (299)
165 COG5416 Uncharacterized integr 42.7 30 0.00064 27.9 3.2 14 2-15 32-45 (98)
166 PHA02975 hypothetical protein; 42.5 69 0.0015 24.2 4.9 15 43-57 52-66 (69)
167 PHA02692 hypothetical protein; 42.4 54 0.0012 24.8 4.3 22 36-57 47-68 (70)
168 PHA00617 ribbon-helix-helix do 39.4 22 0.00048 27.6 1.9 37 242-278 28-67 (80)
169 PHA02898 virion envelope prote 39.3 58 0.0013 25.8 4.2 23 39-61 52-74 (92)
170 PHA02819 hypothetical protein; 39.1 91 0.002 23.7 5.1 16 42-57 53-68 (71)
171 PF14979 TMEM52: Transmembrane 38.6 58 0.0013 28.2 4.5 32 30-61 15-47 (154)
172 PF01708 Gemini_mov: Geminivir 38.4 25 0.00054 27.9 2.1 36 26-61 29-64 (91)
173 PF06844 DUF1244: Protein of u 38.4 19 0.00041 27.0 1.4 12 135-146 11-22 (68)
174 PF14569 zf-UDP: Zinc-binding 38.1 36 0.00078 26.4 2.9 52 109-160 8-63 (80)
175 PHA02680 ORF090 IMV phosphoryl 38.1 69 0.0015 25.3 4.5 15 2-16 20-34 (91)
176 PHA03164 hypothetical protein; 38.0 17 0.00036 28.1 1.0 29 23-51 48-76 (88)
177 PF09943 DUF2175: Uncharacteri 38.0 26 0.00056 28.4 2.2 32 111-144 3-34 (101)
178 PHA03054 IMV membrane protein; 37.5 72 0.0016 24.2 4.3 16 42-57 55-70 (72)
179 PHA02844 putative transmembran 36.7 1E+02 0.0022 23.7 5.0 16 42-57 55-70 (75)
180 smart00064 FYVE Protein presen 36.5 28 0.00061 25.2 2.1 36 110-145 10-45 (68)
181 PHA03048 IMV membrane protein; 36.5 66 0.0014 25.6 4.1 24 39-62 51-74 (93)
182 PLN02400 cellulose synthase 36.2 43 0.00094 37.7 4.2 51 110-160 36-90 (1085)
183 COG3763 Uncharacterized protei 36.0 73 0.0016 24.2 4.2 12 34-45 4-15 (71)
184 PHA02650 hypothetical protein; 36.0 73 0.0016 24.7 4.2 17 42-58 56-72 (81)
185 PF04423 Rad50_zn_hook: Rad50 35.9 13 0.00028 26.2 0.1 12 149-160 21-32 (54)
186 COG4847 Uncharacterized protei 35.5 30 0.00065 27.8 2.1 33 111-145 7-39 (103)
187 PF00737 PsbH: Photosystem II 34.4 1.4E+02 0.003 21.3 5.1 9 28-36 19-27 (52)
188 cd00350 rubredoxin_like Rubred 34.0 21 0.00045 22.7 0.9 19 132-156 7-25 (33)
189 PF10577 UPF0560: Uncharacteri 33.9 85 0.0019 34.2 5.8 24 35-58 276-299 (807)
190 PF12877 DUF3827: Domain of un 33.8 37 0.0008 36.1 3.1 23 28-50 266-288 (684)
191 PF07010 Endomucin: Endomucin; 33.4 1.3E+02 0.0029 28.0 6.3 34 30-63 185-218 (259)
192 PTZ00046 rifin; Provisional 32.8 54 0.0012 32.4 3.9 24 35-58 317-340 (358)
193 TIGR01477 RIFIN variant surfac 32.5 56 0.0012 32.3 4.0 23 36-58 313-335 (353)
194 PF07649 C1_3: C1-like domain; 32.2 40 0.00087 20.7 2.0 29 112-141 2-30 (30)
195 PF05808 Podoplanin: Podoplani 32.1 15 0.00033 32.2 0.0 34 27-60 124-157 (162)
196 PF06667 PspB: Phage shock pro 31.6 1.2E+02 0.0025 23.3 4.7 12 82-93 33-44 (75)
197 PLN02638 cellulose synthase A 31.4 72 0.0016 36.0 5.0 50 110-159 17-70 (1079)
198 COG1622 CyoA Heme/copper-type 31.1 90 0.002 29.2 5.0 34 28-61 28-61 (247)
199 COG3905 Predicted transcriptio 30.0 32 0.00069 26.9 1.5 26 254-279 4-31 (83)
200 CHL00038 psbL photosystem II p 30.0 1.4E+02 0.0031 19.8 4.2 19 29-47 14-32 (38)
201 PF07423 DUF1510: Protein of u 29.6 42 0.00091 30.9 2.4 17 31-47 12-28 (217)
202 KOG4185 Predicted E3 ubiquitin 29.4 10 0.00022 35.8 -1.7 48 111-158 208-266 (296)
203 KOG4323 Polycomb-like PHD Zn-f 29.2 37 0.00079 34.7 2.1 50 109-158 167-225 (464)
204 PF03229 Alpha_GJ: Alphavirus 29.1 89 0.0019 26.1 4.0 39 25-63 76-115 (126)
205 PHA03163 hypothetical protein; 29.1 2.1E+02 0.0046 22.7 5.9 7 31-37 57-63 (92)
206 CHL00118 atpG ATP synthase CF0 28.7 1.1E+02 0.0024 26.2 4.8 13 1-13 1-13 (156)
207 PF04216 FdhE: Protein involve 28.7 7 0.00015 37.1 -2.9 46 111-156 173-219 (290)
208 PF01299 Lamp: Lysosome-associ 28.6 56 0.0012 31.2 3.3 23 32-54 270-292 (306)
209 KOG1245 Chromatin remodeling c 28.2 23 0.0005 41.1 0.6 50 108-158 1106-1159(1404)
210 PF15145 DUF4577: Domain of un 28.1 46 0.001 27.5 2.2 23 77-99 96-118 (128)
211 KOG1729 FYVE finger containing 28.1 11 0.00024 36.1 -1.6 37 111-148 215-251 (288)
212 PF08374 Protocadherin: Protoc 28.0 34 0.00073 31.5 1.5 32 29-62 35-66 (221)
213 PF10497 zf-4CXXC_R1: Zinc-fin 27.8 67 0.0014 26.1 3.1 46 111-156 8-69 (105)
214 KOG0824 Predicted E3 ubiquitin 27.7 36 0.00078 32.9 1.7 48 109-159 104-151 (324)
215 PF04689 S1FA: DNA binding pro 27.7 33 0.00072 25.6 1.1 23 28-50 7-29 (69)
216 PF05568 ASFV_J13L: African sw 27.6 96 0.0021 27.0 4.1 23 37-59 34-56 (189)
217 KOG2071 mRNA cleavage and poly 27.3 30 0.00064 36.3 1.1 35 108-144 511-556 (579)
218 COG3071 HemY Uncharacterized e 27.0 59 0.0013 32.6 3.1 12 4-15 9-20 (400)
219 PF11752 DUF3309: Protein of u 26.9 1.2E+02 0.0026 21.4 3.7 14 2-15 4-17 (49)
220 PF13832 zf-HC5HC2H_2: PHD-zin 26.7 34 0.00075 27.2 1.2 34 109-144 54-88 (110)
221 PF05605 zf-Di19: Drought indu 26.6 25 0.00053 24.7 0.3 36 111-157 3-40 (54)
222 PRK14584 hmsS hemin storage sy 25.9 2.1E+02 0.0047 24.9 6.0 22 30-51 59-80 (153)
223 PF05393 Hum_adeno_E3A: Human 25.7 69 0.0015 25.4 2.6 8 24-31 28-35 (94)
224 PF14311 DUF4379: Domain of un 24.9 46 0.00099 23.4 1.4 23 131-154 33-55 (55)
225 KOG2231 Predicted E3 ubiquitin 24.8 48 0.001 35.4 2.2 45 112-160 2-53 (669)
226 PRK09458 pspB phage shock prot 24.0 1.9E+02 0.004 22.3 4.6 15 81-95 32-46 (75)
227 PLN02915 cellulose synthase A 23.7 1.2E+02 0.0025 34.3 4.9 52 109-160 14-69 (1044)
228 PHA03240 envelope glycoprotein 23.5 66 0.0014 29.8 2.5 9 31-39 214-222 (258)
229 PHA03030 hypothetical protein; 23.4 68 0.0015 26.2 2.3 17 47-63 12-28 (122)
230 KOG3039 Uncharacterized conser 23.4 65 0.0014 30.4 2.5 33 110-146 43-75 (303)
231 PF13771 zf-HC5HC2H: PHD-like 23.4 40 0.00086 25.7 1.0 33 109-143 35-68 (90)
232 smart00647 IBR In Between Ring 23.4 24 0.00052 24.9 -0.3 21 124-144 38-58 (64)
233 PF05393 Hum_adeno_E3A: Human 23.3 2.6E+02 0.0055 22.3 5.4 11 26-36 26-36 (94)
234 PF07282 OrfB_Zn_ribbon: Putat 23.2 61 0.0013 23.5 1.9 34 110-143 28-63 (69)
235 PF05767 Pox_A14: Poxvirus vir 22.9 1.7E+02 0.0037 23.3 4.4 23 39-61 52-74 (92)
236 COG1592 Rubrerythrin [Energy p 22.4 42 0.00091 29.6 1.0 23 128-157 136-158 (166)
237 PRK03564 formate dehydrogenase 22.3 47 0.001 32.3 1.4 47 109-156 186-234 (309)
238 KOG4577 Transcription factor L 21.9 23 0.00049 34.1 -0.8 33 110-144 92-124 (383)
239 PRK02624 psbH photosystem II r 21.8 2.3E+02 0.0049 21.1 4.5 6 33-38 29-34 (64)
240 PF03908 Sec20: Sec20; InterP 21.7 1E+02 0.0023 23.9 3.1 14 44-57 77-90 (92)
241 PF06667 PspB: Phage shock pro 21.7 2.1E+02 0.0045 21.9 4.6 9 49-57 20-28 (75)
242 PF13179 DUF4006: Family of un 21.7 1.7E+02 0.0036 22.0 3.9 22 35-56 16-37 (66)
243 COG3492 Uncharacterized protei 21.3 48 0.001 26.5 1.0 13 135-147 42-54 (104)
244 PRK00753 psbL photosystem II r 21.2 2.1E+02 0.0046 19.0 3.8 18 29-46 15-32 (39)
245 PRK04778 septation ring format 21.1 1E+02 0.0022 32.2 3.8 21 37-57 5-25 (569)
246 PRK00523 hypothetical protein; 21.1 2E+02 0.0044 21.9 4.3 8 84-91 39-46 (72)
247 PRK09040 hypothetical protein; 21.1 1.3E+02 0.0028 27.4 3.9 25 27-51 10-34 (214)
248 PF06024 DUF912: Nucleopolyhed 21.1 69 0.0015 25.7 2.0 21 34-54 60-80 (101)
249 PRK01844 hypothetical protein; 20.7 2.1E+02 0.0045 21.8 4.3 7 85-91 39-45 (72)
250 PF06422 PDR_CDR: CDR ABC tran 20.5 1.4E+02 0.0031 23.8 3.7 30 26-55 43-72 (103)
251 TIGR02976 phageshock_pspB phag 20.5 2.5E+02 0.0053 21.5 4.8 11 83-93 34-44 (75)
No 1
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.77 E-value=4.2e-19 Score=170.13 Aligned_cols=79 Identities=32% Similarity=0.851 Sum_probs=67.1
Q ss_pred ccCCCCHHHHhhCCCcccchhhhhccCCCCcccccccccccCCcceEEecCCCccccHHHHHHHHhcC-CCCcccccccc
Q 048010 81 AARGLDREVIDTFPTFVYSEVKTLKVGKGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESH-TTCPVCRSNLA 159 (320)
Q Consensus 81 ~~~gl~~~~i~~lp~~~~~~~~~~~~~~~~~~C~ICl~~~~~~~~~r~lp~C~H~FH~~Ci~~Wl~~~-~~CP~CR~~l~ 159 (320)
..+.+.+..++++|...|....+... ...|+||||+|++++++|+|| |+|.||..|||+||..+ ..||+|+.++.
T Consensus 203 ~~~r~~k~~l~~~p~~~f~~~~~~~~---~~~CaIClEdY~~GdklRiLP-C~H~FH~~CIDpWL~~~r~~CPvCK~di~ 278 (348)
T KOG4628|consen 203 RRNRLIKRLLKKLPVRTFTKGDDEDA---TDTCAICLEDYEKGDKLRILP-CSHKFHVNCIDPWLTQTRTFCPVCKRDIR 278 (348)
T ss_pred hhhhhHHHHHhhCCcEEeccccccCC---CceEEEeecccccCCeeeEec-CCCchhhccchhhHhhcCccCCCCCCcCC
Confidence 45678899999999999998655432 268999999999999999999 99999999999999776 55999999886
Q ss_pred CCCC
Q 048010 160 SEPG 163 (320)
Q Consensus 160 ~~~~ 163 (320)
....
T Consensus 279 ~~~~ 282 (348)
T KOG4628|consen 279 TDSG 282 (348)
T ss_pred CCCC
Confidence 5443
No 2
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=99.52 E-value=4.6e-15 Score=101.97 Aligned_cols=44 Identities=55% Similarity=1.302 Sum_probs=40.3
Q ss_pred cccccccccccCCcceEEecCCCccccHHHHHHHHhcCCCCcccc
Q 048010 111 LECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCR 155 (320)
Q Consensus 111 ~~C~ICl~~~~~~~~~r~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR 155 (320)
++|+||+++|..++.+..++ |+|+||.+||..|++.+.+||+||
T Consensus 1 d~C~IC~~~~~~~~~~~~l~-C~H~fh~~Ci~~~~~~~~~CP~CR 44 (44)
T PF13639_consen 1 DECPICLEEFEDGEKVVKLP-CGHVFHRSCIKEWLKRNNSCPVCR 44 (44)
T ss_dssp -CETTTTCBHHTTSCEEEET-TSEEEEHHHHHHHHHHSSB-TTTH
T ss_pred CCCcCCChhhcCCCeEEEcc-CCCeeCHHHHHHHHHhCCcCCccC
Confidence 37999999999999999998 999999999999999999999997
No 3
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=99.39 E-value=4.2e-13 Score=128.19 Aligned_cols=70 Identities=30% Similarity=0.817 Sum_probs=53.3
Q ss_pred CCHHHHhhCCCcccchhhhhccCCCCccccccccc-ccCC---------cceEEecCCCccccHHHHHHHHhcCCCCccc
Q 048010 85 LDREVIDTFPTFVYSEVKTLKVGKGALECAVCLNE-FEDD---------ETLRLIPKCDHVFHPECIDAWLESHTTCPVC 154 (320)
Q Consensus 85 l~~~~i~~lp~~~~~~~~~~~~~~~~~~C~ICl~~-~~~~---------~~~r~lp~C~H~FH~~Ci~~Wl~~~~~CP~C 154 (320)
..++..+.+|+..... ...++..|.||+++ |..+ .+.+.|| |||+||.+|++.|++++++||+|
T Consensus 267 ~~kdl~~~~~t~t~eq-----l~n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLp-CGHilHl~CLknW~ERqQTCPIC 340 (491)
T COG5243 267 ATKDLNAMYPTATEEQ-----LTNSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLP-CGHILHLHCLKNWLERQQTCPIC 340 (491)
T ss_pred HhhHHHhhcchhhhhh-----hcCCCCeEEEecccccCCCCccCcccccCCccccc-ccceeeHHHHHHHHHhccCCCcc
Confidence 4455556666654333 35677899999999 4443 2346787 99999999999999999999999
Q ss_pred cccccC
Q 048010 155 RSNLAS 160 (320)
Q Consensus 155 R~~l~~ 160 (320)
|.++.-
T Consensus 341 r~p~if 346 (491)
T COG5243 341 RRPVIF 346 (491)
T ss_pred cCcccc
Confidence 999543
No 4
>PHA02929 N1R/p28-like protein; Provisional
Probab=99.33 E-value=1.3e-12 Score=120.41 Aligned_cols=77 Identities=31% Similarity=0.686 Sum_probs=59.1
Q ss_pred cCCCCHHHHhhCCCcccchhhhhccCCCCcccccccccccCCc----ceEEecCCCccccHHHHHHHHhcCCCCcccccc
Q 048010 82 ARGLDREVIDTFPTFVYSEVKTLKVGKGALECAVCLNEFEDDE----TLRLIPKCDHVFHPECIDAWLESHTTCPVCRSN 157 (320)
Q Consensus 82 ~~gl~~~~i~~lp~~~~~~~~~~~~~~~~~~C~ICl~~~~~~~----~~r~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~ 157 (320)
..+..+..++.+|.+...-.... ....+.+|+||++.+.+++ .+.+++.|+|.||.+||..|++.+.+||+||.+
T Consensus 147 k~~~~~~~i~~lp~vl~~~e~~~-~~~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~~~tCPlCR~~ 225 (238)
T PHA02929 147 KGKNYKKFLKTIPSVLSEYEKLY-NRSKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKEKNTCPVCRTP 225 (238)
T ss_pred hcchhHHHHHhcchhhhhhhhhh-cCCCCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhcCCCCCCCCCE
Confidence 35668889999999865432222 2234679999999987654 234555699999999999999999999999998
Q ss_pred cc
Q 048010 158 LA 159 (320)
Q Consensus 158 l~ 159 (320)
+.
T Consensus 226 ~~ 227 (238)
T PHA02929 226 FI 227 (238)
T ss_pred ee
Confidence 75
No 5
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=99.31 E-value=7.8e-13 Score=100.86 Aligned_cols=46 Identities=39% Similarity=0.959 Sum_probs=36.3
Q ss_pred CCcccccccccccCC----------cceEEecCCCccccHHHHHHHHhcCCCCcccc
Q 048010 109 GALECAVCLNEFEDD----------ETLRLIPKCDHVFHPECIDAWLESHTTCPVCR 155 (320)
Q Consensus 109 ~~~~C~ICl~~~~~~----------~~~r~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR 155 (320)
.++.|+||++.|.+. -.+.+. .|+|.||..||.+||+.+.+||+||
T Consensus 18 ~~d~C~IC~~~l~~~~~~~~~~~~~~~i~~~-~C~H~FH~~Ci~~Wl~~~~~CP~CR 73 (73)
T PF12678_consen 18 ADDNCAICREPLEDPCPECQAPQDECPIVWG-PCGHIFHFHCISQWLKQNNTCPLCR 73 (73)
T ss_dssp CCSBETTTTSBTTSTTCCHHHCTTTS-EEEE-TTSEEEEHHHHHHHHTTSSB-TTSS
T ss_pred cCCcccccChhhhChhhhhcCCccccceEec-ccCCCEEHHHHHHHHhcCCcCCCCC
Confidence 455699999999432 234444 4999999999999999999999998
No 6
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.25 E-value=3.1e-12 Score=119.55 Aligned_cols=51 Identities=43% Similarity=1.158 Sum_probs=46.3
Q ss_pred CCcccccccccccCCcceEEecCCCccccHHHHHHHHhc-CCCCccccccccC
Q 048010 109 GALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLES-HTTCPVCRSNLAS 160 (320)
Q Consensus 109 ~~~~C~ICl~~~~~~~~~r~lp~C~H~FH~~Ci~~Wl~~-~~~CP~CR~~l~~ 160 (320)
.+-+|+|||++|..+++++.+| |.|.||..|+++|+.. +..||+||.++.+
T Consensus 322 ~GveCaICms~fiK~d~~~vlP-C~H~FH~~Cv~kW~~~y~~~CPvCrt~iPP 373 (374)
T COG5540 322 KGVECAICMSNFIKNDRLRVLP-CDHRFHVGCVDKWLLGYSNKCPVCRTAIPP 373 (374)
T ss_pred CCceEEEEhhhhcccceEEEec-cCceechhHHHHHHhhhcccCCccCCCCCC
Confidence 4579999999999999999999 9999999999999985 5689999998864
No 7
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=98.94 E-value=6.8e-10 Score=74.53 Aligned_cols=44 Identities=55% Similarity=1.326 Sum_probs=36.4
Q ss_pred ccccccccccCCcceEEecCCCccccHHHHHHHHhc-CCCCccccccc
Q 048010 112 ECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLES-HTTCPVCRSNL 158 (320)
Q Consensus 112 ~C~ICl~~~~~~~~~r~lp~C~H~FH~~Ci~~Wl~~-~~~CP~CR~~l 158 (320)
+|+||++.+. +.+.+.+ |+|.||..|++.|++. ...||+|+..+
T Consensus 1 ~C~iC~~~~~--~~~~~~~-C~H~~c~~C~~~~~~~~~~~Cp~C~~~~ 45 (45)
T cd00162 1 ECPICLEEFR--EPVVLLP-CGHVFCRSCIDKWLKSGKNTCPLCRTPI 45 (45)
T ss_pred CCCcCchhhh--CceEecC-CCChhcHHHHHHHHHhCcCCCCCCCCcC
Confidence 4999999983 3455554 9999999999999987 77899999764
No 8
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=98.92 E-value=1e-09 Score=77.30 Aligned_cols=46 Identities=35% Similarity=0.962 Sum_probs=39.0
Q ss_pred CcccccccccccCCcceEEecCCCcc-ccHHHHHHHHhcCCCCcccccccc
Q 048010 110 ALECAVCLNEFEDDETLRLIPKCDHV-FHPECIDAWLESHTTCPVCRSNLA 159 (320)
Q Consensus 110 ~~~C~ICl~~~~~~~~~r~lp~C~H~-FH~~Ci~~Wl~~~~~CP~CR~~l~ 159 (320)
+..|.||++.+.+ +.++| |||. |+..|+..|++....||+||+++.
T Consensus 2 ~~~C~iC~~~~~~---~~~~p-CgH~~~C~~C~~~~~~~~~~CP~Cr~~i~ 48 (50)
T PF13920_consen 2 DEECPICFENPRD---VVLLP-CGHLCFCEECAERLLKRKKKCPICRQPIE 48 (50)
T ss_dssp HSB-TTTSSSBSS---EEEET-TCEEEEEHHHHHHHHHTTSBBTTTTBB-S
T ss_pred cCCCccCCccCCc---eEEeC-CCChHHHHHHhHHhcccCCCCCcCChhhc
Confidence 3579999998665 66777 9999 999999999999999999999875
No 9
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=98.89 E-value=1.2e-09 Score=97.45 Aligned_cols=50 Identities=32% Similarity=0.897 Sum_probs=40.1
Q ss_pred CCCcccccccccccCCcceEEecCCCccccHHHHHHHHhc----------------CCCCccccccccCC
Q 048010 108 KGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLES----------------HTTCPVCRSNLASE 161 (320)
Q Consensus 108 ~~~~~C~ICl~~~~~~~~~r~lp~C~H~FH~~Ci~~Wl~~----------------~~~CP~CR~~l~~~ 161 (320)
.+..+|+||++.++++ .+++ |||+||..||..|+.. ...||+||.++...
T Consensus 16 ~~~~~CpICld~~~dP---VvT~-CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~ 81 (193)
T PLN03208 16 GGDFDCNICLDQVRDP---VVTL-CGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEA 81 (193)
T ss_pred CCccCCccCCCcCCCc---EEcC-CCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChh
Confidence 3568999999998764 3455 9999999999999852 34799999998643
No 10
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.87 E-value=1.1e-09 Score=102.15 Aligned_cols=50 Identities=28% Similarity=0.842 Sum_probs=42.8
Q ss_pred CCCcccccccccccCCcceEEecCCCccccHHHHHHHHhcCCCCccccccccCC
Q 048010 108 KGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLASE 161 (320)
Q Consensus 108 ~~~~~C~ICl~~~~~~~~~r~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~~ 161 (320)
.....|.+||+...+.... | |||+||..||..|...+..||+||..+.+.
T Consensus 237 ~a~~kC~LCLe~~~~pSaT---p-CGHiFCWsCI~~w~~ek~eCPlCR~~~~ps 286 (293)
T KOG0317|consen 237 EATRKCSLCLENRSNPSAT---P-CGHIFCWSCILEWCSEKAECPLCREKFQPS 286 (293)
T ss_pred CCCCceEEEecCCCCCCcC---c-CcchHHHHHHHHHHccccCCCcccccCCCc
Confidence 3457899999998876554 4 999999999999999999999999987643
No 11
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.87 E-value=1.1e-09 Score=95.67 Aligned_cols=52 Identities=31% Similarity=0.867 Sum_probs=43.7
Q ss_pred CCCcccccccccccCCcceEEecCCCccccHHHHHHHHhcCCCCccccccccCC
Q 048010 108 KGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLASE 161 (320)
Q Consensus 108 ~~~~~C~ICl~~~~~~~~~r~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~~ 161 (320)
++...|+|||+.+.+...+ -.+|||+||..||+.-++....||+|++.|..+
T Consensus 129 ~~~~~CPiCl~~~sek~~v--sTkCGHvFC~~Cik~alk~~~~CP~C~kkIt~k 180 (187)
T KOG0320|consen 129 EGTYKCPICLDSVSEKVPV--STKCGHVFCSQCIKDALKNTNKCPTCRKKITHK 180 (187)
T ss_pred ccccCCCceecchhhcccc--ccccchhHHHHHHHHHHHhCCCCCCcccccchh
Confidence 3457899999999876543 237999999999999999999999999987643
No 12
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.87 E-value=1.2e-09 Score=112.20 Aligned_cols=52 Identities=35% Similarity=0.943 Sum_probs=45.2
Q ss_pred CCCcccccccccccCCcc--eEEecCCCccccHHHHHHHHhcCCCCccccccccC
Q 048010 108 KGALECAVCLNEFEDDET--LRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLAS 160 (320)
Q Consensus 108 ~~~~~C~ICl~~~~~~~~--~r~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~ 160 (320)
..+..|+||++++..+.. .+.++ |+|+||..|+..|+++.++||+||..+..
T Consensus 289 ~~~~~C~IC~e~l~~~~~~~~~rL~-C~Hifh~~CL~~W~er~qtCP~CR~~~~~ 342 (543)
T KOG0802|consen 289 LSDELCIICLEELHSGHNITPKRLP-CGHIFHDSCLRSWFERQQTCPTCRTVLYD 342 (543)
T ss_pred hcCCeeeeechhhccccccccceee-cccchHHHHHHHHHHHhCcCCcchhhhhc
Confidence 356789999999998754 67777 99999999999999999999999995543
No 13
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=98.86 E-value=1.9e-09 Score=72.14 Aligned_cols=39 Identities=46% Similarity=1.215 Sum_probs=32.7
Q ss_pred cccccccccCCcceEEecCCCccccHHHHHHHHhcCCCCccc
Q 048010 113 CAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVC 154 (320)
Q Consensus 113 C~ICl~~~~~~~~~r~lp~C~H~FH~~Ci~~Wl~~~~~CP~C 154 (320)
|+||++.+.+ .+..++ |||+|+.+||.+|++.+..||+|
T Consensus 1 C~iC~~~~~~--~~~~~~-CGH~fC~~C~~~~~~~~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRD--PVVVTP-CGHSFCKECIEKYLEKNPKCPVC 39 (39)
T ss_dssp ETTTTSB-SS--EEEECT-TSEEEEHHHHHHHHHCTSB-TTT
T ss_pred CCCCCCcccC--cCEECC-CCCchhHHHHHHHHHCcCCCcCC
Confidence 8999999887 345665 99999999999999998999998
No 14
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=98.85 E-value=1.9e-09 Score=84.04 Aligned_cols=51 Identities=31% Similarity=0.768 Sum_probs=39.8
Q ss_pred CCcccccccccccC--------Cc-ceEEecCCCccccHHHHHHHHhc---CCCCcccccccc
Q 048010 109 GALECAVCLNEFED--------DE-TLRLIPKCDHVFHPECIDAWLES---HTTCPVCRSNLA 159 (320)
Q Consensus 109 ~~~~C~ICl~~~~~--------~~-~~r~lp~C~H~FH~~Ci~~Wl~~---~~~CP~CR~~l~ 159 (320)
+++.|.||...|+. ++ ...++.+|+|.||..||.+||.+ +..||+||++..
T Consensus 20 ~dd~CgICr~~fdg~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~ 82 (85)
T PF12861_consen 20 NDDVCGICRMPFDGCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWK 82 (85)
T ss_pred CCCceeeEecccccCCCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCeee
Confidence 46789999999972 22 22334469999999999999975 568999999765
No 15
>PHA02926 zinc finger-like protein; Provisional
Probab=98.80 E-value=2.6e-09 Score=96.64 Aligned_cols=51 Identities=27% Similarity=0.847 Sum_probs=40.2
Q ss_pred CCcccccccccccCC-----cceEEecCCCccccHHHHHHHHhcC------CCCcccccccc
Q 048010 109 GALECAVCLNEFEDD-----ETLRLIPKCDHVFHPECIDAWLESH------TTCPVCRSNLA 159 (320)
Q Consensus 109 ~~~~C~ICl~~~~~~-----~~~r~lp~C~H~FH~~Ci~~Wl~~~------~~CP~CR~~l~ 159 (320)
.+.+|+|||+...+. ....+|+.|+|.||..||+.|.+.+ .+||+||..+.
T Consensus 169 kE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~ 230 (242)
T PHA02926 169 KEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFR 230 (242)
T ss_pred CCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceee
Confidence 357899999987432 2345777899999999999999753 46999999765
No 16
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=98.75 E-value=4e-09 Score=80.60 Aligned_cols=52 Identities=31% Similarity=0.676 Sum_probs=40.4
Q ss_pred CcccccccccccC-----------C-cceEEecCCCccccHHHHHHHHhcCCCCccccccccCC
Q 048010 110 ALECAVCLNEFED-----------D-ETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLASE 161 (320)
Q Consensus 110 ~~~C~ICl~~~~~-----------~-~~~r~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~~ 161 (320)
.+.|+||...|.+ + +.......|.|.||.+||..||..+..||+||+.....
T Consensus 20 id~CaICRnhim~~C~eCq~~~~~~~eC~v~wG~CnHaFH~HCI~rWL~Tk~~CPld~q~w~~~ 83 (88)
T COG5194 20 IDVCAICRNHIMGTCPECQFGMTPGDECPVVWGVCNHAFHDHCIYRWLDTKGVCPLDRQTWVLA 83 (88)
T ss_pred cchhhhhhccccCcCcccccCCCCCCcceEEEEecchHHHHHHHHHHHhhCCCCCCCCceeEEe
Confidence 3678888877742 2 33333446999999999999999999999999987644
No 17
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.75 E-value=5e-09 Score=95.24 Aligned_cols=53 Identities=28% Similarity=0.807 Sum_probs=41.7
Q ss_pred CCCCcccccccccccCCcceEEecCCCccccHHHHHHHHhc---CCCCccccccccCCCC
Q 048010 107 GKGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLES---HTTCPVCRSNLASEPG 163 (320)
Q Consensus 107 ~~~~~~C~ICl~~~~~~~~~r~lp~C~H~FH~~Ci~~Wl~~---~~~CP~CR~~l~~~~~ 163 (320)
..+..+|.|||+.-+++ |. .. |||+||+.||.+||.. .+.||+|+..+..+..
T Consensus 44 ~~~~FdCNICLd~akdP--Vv-Tl-CGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~~~v 99 (230)
T KOG0823|consen 44 DGGFFDCNICLDLAKDP--VV-TL-CGHLFCWPCLYQWLQTRPNSKECPVCKAEVSIDTV 99 (230)
T ss_pred CCCceeeeeeccccCCC--EE-ee-cccceehHHHHHHHhhcCCCeeCCccccccccceE
Confidence 34668999999997764 33 33 9999999999999965 4579999999875543
No 18
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=98.69 E-value=1.2e-08 Score=70.05 Aligned_cols=44 Identities=27% Similarity=0.937 Sum_probs=38.0
Q ss_pred ccccccccccCCcceEEecCCCccccHHHHHHHHhcCCCCccccc
Q 048010 112 ECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRS 156 (320)
Q Consensus 112 ~C~ICl~~~~~~~~~r~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~ 156 (320)
+|.||++.|.+.....+++ |||+|+..|+..+......||+||+
T Consensus 1 ~C~~C~~~~~~~~~~~l~~-CgH~~C~~C~~~~~~~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTS-CGHIFCEKCLKKLKGKSVKCPICRK 44 (44)
T ss_pred CCcCcCccccCCCCeEEcc-cCCHHHHHHHHhhcCCCCCCcCCCC
Confidence 4999999996666677776 9999999999999866779999984
No 19
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=98.65 E-value=1.6e-08 Score=67.93 Aligned_cols=39 Identities=46% Similarity=1.261 Sum_probs=33.5
Q ss_pred cccccccccCCcceEEecCCCccccHHHHHHHHh--cCCCCccc
Q 048010 113 CAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLE--SHTTCPVC 154 (320)
Q Consensus 113 C~ICl~~~~~~~~~r~lp~C~H~FH~~Ci~~Wl~--~~~~CP~C 154 (320)
|+||++.+.+.. .+++ |+|.|+..||..|++ ....||+|
T Consensus 1 C~iC~~~~~~~~--~~~~-C~H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDPV--ILLP-CGHSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSEE--EETT-TSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccCCC--EEec-CCCcchHHHHHHHHHhcCCccCCcC
Confidence 899999988754 4565 999999999999998 56689998
No 20
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=98.64 E-value=2.5e-08 Score=64.50 Aligned_cols=38 Identities=42% Similarity=1.236 Sum_probs=32.1
Q ss_pred cccccccccCCcceEEecCCCccccHHHHHHHHh-cCCCCccc
Q 048010 113 CAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLE-SHTTCPVC 154 (320)
Q Consensus 113 C~ICl~~~~~~~~~r~lp~C~H~FH~~Ci~~Wl~-~~~~CP~C 154 (320)
|+||++.. .....++ |+|.||..|++.|++ .+..||+|
T Consensus 1 C~iC~~~~---~~~~~~~-C~H~~c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEEL---KDPVVLP-CGHTFCRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcCccCC---CCcEEec-CCChHHHHHHHHHHHhCcCCCCCC
Confidence 78999983 3466676 999999999999998 66789998
No 21
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=98.58 E-value=5.5e-08 Score=71.03 Aligned_cols=45 Identities=29% Similarity=0.620 Sum_probs=39.4
Q ss_pred cccccccccccCCcceEEecCCCccccHHHHHHHHhcCCCCcccccccc
Q 048010 111 LECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLA 159 (320)
Q Consensus 111 ~~C~ICl~~~~~~~~~r~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~ 159 (320)
..|+||++.|.++ .+++ |||+|+..||..|++.+.+||+|+.++.
T Consensus 2 ~~Cpi~~~~~~~P---v~~~-~G~v~~~~~i~~~~~~~~~cP~~~~~~~ 46 (63)
T smart00504 2 FLCPISLEVMKDP---VILP-SGQTYERRAIEKWLLSHGTDPVTGQPLT 46 (63)
T ss_pred cCCcCCCCcCCCC---EECC-CCCEEeHHHHHHHHHHCCCCCCCcCCCC
Confidence 4699999999985 3455 9999999999999988899999998874
No 22
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=98.51 E-value=5e-08 Score=66.58 Aligned_cols=38 Identities=32% Similarity=0.953 Sum_probs=28.5
Q ss_pred cccccccccCCcceEEecCCCccccHHHHHHHHhcC----CCCccc
Q 048010 113 CAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESH----TTCPVC 154 (320)
Q Consensus 113 C~ICl~~~~~~~~~r~lp~C~H~FH~~Ci~~Wl~~~----~~CP~C 154 (320)
|+||++.|.++.. + .|||.|+..||..|.+.. ..||+|
T Consensus 1 CpiC~~~~~~Pv~---l-~CGH~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKDPVS---L-PCGHSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SSEEE-----SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhCCccc---c-CCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence 8999999998644 4 499999999999999653 469988
No 23
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.46 E-value=5.3e-08 Score=77.99 Aligned_cols=69 Identities=25% Similarity=0.500 Sum_probs=47.6
Q ss_pred hCCCcccchhhhhccCCCCccccccccccc-------------CCcceEEecCCCccccHHHHHHHHhcCCCCccccccc
Q 048010 92 TFPTFVYSEVKTLKVGKGALECAVCLNEFE-------------DDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNL 158 (320)
Q Consensus 92 ~lp~~~~~~~~~~~~~~~~~~C~ICl~~~~-------------~~~~~r~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l 158 (320)
.|...+++.+..-.-.-..+.|+||...+. .++.+..-..|+|.||..||..||+.+..||+|-++.
T Consensus 28 rF~lKKWnAvAlWaWDi~vDnCAICRnHIMd~CieCQa~~~~~~~EC~VaWG~CNHaFH~hCisrWlktr~vCPLdn~eW 107 (114)
T KOG2930|consen 28 RFELKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQSATSEECTVAWGVCNHAFHFHCISRWLKTRNVCPLDNKEW 107 (114)
T ss_pred ceEEeeeeeeeeeeeeeeechhHHHHHHHHHHHHhhccCCCCCCCceEEEeeecchHHHHHHHHHHHhhcCcCCCcCcce
Confidence 344445555443333334578999887663 2334444446999999999999999999999998776
Q ss_pred cC
Q 048010 159 AS 160 (320)
Q Consensus 159 ~~ 160 (320)
..
T Consensus 108 ~~ 109 (114)
T KOG2930|consen 108 VF 109 (114)
T ss_pred eE
Confidence 43
No 24
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.41 E-value=3e-08 Score=75.25 Aligned_cols=52 Identities=31% Similarity=0.774 Sum_probs=39.2
Q ss_pred CCCcccccccccccC---------CcceEEecCCCccccHHHHHHHHhc---CCCCcccccccc
Q 048010 108 KGALECAVCLNEFED---------DETLRLIPKCDHVFHPECIDAWLES---HTTCPVCRSNLA 159 (320)
Q Consensus 108 ~~~~~C~ICl~~~~~---------~~~~r~lp~C~H~FH~~Ci~~Wl~~---~~~CP~CR~~l~ 159 (320)
..+..|-||.-.|.. ++...++..|.|.||..||.+|+.. +..||+||....
T Consensus 18 ~~~e~CGiCRm~Fdg~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~~ 81 (84)
T KOG1493|consen 18 APDETCGICRMPFDGCCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTWQ 81 (84)
T ss_pred CCCCccceEecccCCcCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCccccccCCcchheeE
Confidence 345589999999973 2222344469999999999999954 557999998764
No 25
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.36 E-value=2.4e-07 Score=91.47 Aligned_cols=49 Identities=31% Similarity=0.754 Sum_probs=41.7
Q ss_pred CCCcccccccccccCCcceEEecCCCccccHHHHHHHHhcCCCCccccccccC
Q 048010 108 KGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLAS 160 (320)
Q Consensus 108 ~~~~~C~ICl~~~~~~~~~r~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~ 160 (320)
+....|+||++.|.... +++ |+|.||..||..|+.....||+||..+..
T Consensus 24 e~~l~C~IC~d~~~~Pv---itp-CgH~FCs~CI~~~l~~~~~CP~Cr~~~~~ 72 (397)
T TIGR00599 24 DTSLRCHICKDFFDVPV---LTS-CSHTFCSLCIRRCLSNQPKCPLCRAEDQE 72 (397)
T ss_pred ccccCCCcCchhhhCcc---CCC-CCCchhHHHHHHHHhCCCCCCCCCCcccc
Confidence 35578999999997653 455 99999999999999988899999998754
No 26
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.36 E-value=1.1e-07 Score=88.09 Aligned_cols=54 Identities=30% Similarity=0.701 Sum_probs=44.0
Q ss_pred CCCCcccccccccccCCc-------ceEEecCCCccccHHHHHHHH--hcCCCCccccccccCC
Q 048010 107 GKGALECAVCLNEFEDDE-------TLRLIPKCDHVFHPECIDAWL--ESHTTCPVCRSNLASE 161 (320)
Q Consensus 107 ~~~~~~C~ICl~~~~~~~-------~~r~lp~C~H~FH~~Ci~~Wl--~~~~~CP~CR~~l~~~ 161 (320)
..++..|+||-..+.... .+-.|. |+|+||..||+-|- ..+++||-|+..+..+
T Consensus 221 hl~d~vCaVCg~~~~~s~~eegvienty~Ls-CnHvFHEfCIrGWcivGKkqtCPYCKekVdl~ 283 (328)
T KOG1734|consen 221 HLSDSVCAVCGQQIDVSVDEEGVIENTYKLS-CNHVFHEFCIRGWCIVGKKQTCPYCKEKVDLK 283 (328)
T ss_pred CCCcchhHhhcchheeecchhhhhhhheeee-cccchHHHhhhhheeecCCCCCchHHHHhhHh
Confidence 346678999999997655 566775 99999999999996 4577999999887654
No 27
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.28 E-value=8.3e-07 Score=88.18 Aligned_cols=49 Identities=33% Similarity=0.961 Sum_probs=38.0
Q ss_pred CcccccccccccCC-----cc---------eEEecCCCccccHHHHHHHHhc-CCCCcccccccc
Q 048010 110 ALECAVCLNEFEDD-----ET---------LRLIPKCDHVFHPECIDAWLES-HTTCPVCRSNLA 159 (320)
Q Consensus 110 ~~~C~ICl~~~~~~-----~~---------~r~lp~C~H~FH~~Ci~~Wl~~-~~~CP~CR~~l~ 159 (320)
..+|+|||.++.-- .. ..+.| |.|+||..|+..|+.. +--||+||.++.
T Consensus 571 t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tP-C~HifH~~CL~~WMd~ykl~CPvCR~pLP 634 (636)
T KOG0828|consen 571 TNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTP-CHHIFHRQCLLQWMDTYKLICPVCRCPLP 634 (636)
T ss_pred cccceEeccccceeeccCcchhhhhhhhccccccc-hHHHHHHHHHHHHHhhhcccCCccCCCCC
Confidence 45799999998621 11 12445 9999999999999985 459999999885
No 28
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.26 E-value=4.6e-07 Score=83.93 Aligned_cols=50 Identities=30% Similarity=0.787 Sum_probs=40.4
Q ss_pred CCcccccccccccCCcceEEecCCCccccHHHHHH-HHhcCC-CCccccccccCCC
Q 048010 109 GALECAVCLNEFEDDETLRLIPKCDHVFHPECIDA-WLESHT-TCPVCRSNLASEP 162 (320)
Q Consensus 109 ~~~~C~ICl~~~~~~~~~r~lp~C~H~FH~~Ci~~-Wl~~~~-~CP~CR~~l~~~~ 162 (320)
.+.+|+||++....... ++ |||+||..||-. |-+.+. .||+||+.+.++.
T Consensus 214 ~d~kC~lC~e~~~~ps~---t~-CgHlFC~~Cl~~~~t~~k~~~CplCRak~~pk~ 265 (271)
T COG5574 214 ADYKCFLCLEEPEVPSC---TP-CGHLFCLSCLLISWTKKKYEFCPLCRAKVYPKK 265 (271)
T ss_pred cccceeeeecccCCccc---cc-ccchhhHHHHHHHHHhhccccCchhhhhccchh
Confidence 46789999999877544 44 999999999999 976655 5999999886543
No 29
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=98.19 E-value=1.3e-06 Score=61.65 Aligned_cols=42 Identities=29% Similarity=0.927 Sum_probs=32.1
Q ss_pred ccccccccccCCcceEEecCCC-----ccccHHHHHHHHhc--CCCCcccc
Q 048010 112 ECAVCLNEFEDDETLRLIPKCD-----HVFHPECIDAWLES--HTTCPVCR 155 (320)
Q Consensus 112 ~C~ICl~~~~~~~~~r~lp~C~-----H~FH~~Ci~~Wl~~--~~~CP~CR 155 (320)
.|.||++...++ ...+.| |. |.+|..|+..|+.. +.+||+|.
T Consensus 1 ~CrIC~~~~~~~-~~l~~P-C~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHDEGDEG-DPLVSP-CRCKGSLKYVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCCCCCCC-CeeEec-cccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence 389999944444 444677 85 99999999999954 55899994
No 30
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=98.10 E-value=8.1e-07 Score=93.69 Aligned_cols=52 Identities=31% Similarity=0.869 Sum_probs=39.4
Q ss_pred CCCcccccccccccCCc-c--eEEecCCCccccHHHHHHHHhc--CCCCcccccccc
Q 048010 108 KGALECAVCLNEFEDDE-T--LRLIPKCDHVFHPECIDAWLES--HTTCPVCRSNLA 159 (320)
Q Consensus 108 ~~~~~C~ICl~~~~~~~-~--~r~lp~C~H~FH~~Ci~~Wl~~--~~~CP~CR~~l~ 159 (320)
.+..|||||+..+..-+ . -+..+.|.|.||..|+.+|+++ +.+||+||..+.
T Consensus 1467 sG~eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRseit 1523 (1525)
T COG5219 1467 SGHEECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEIT 1523 (1525)
T ss_pred CCcchhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcCCCCCCccccccc
Confidence 35679999999887221 1 1233459999999999999975 568999998764
No 31
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.08 E-value=1.9e-06 Score=86.22 Aligned_cols=51 Identities=25% Similarity=0.646 Sum_probs=39.9
Q ss_pred CcccccccccccCCcceEEecCCCccccHHHHHHHHhc-----CCCCccccccccCCCCC
Q 048010 110 ALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLES-----HTTCPVCRSNLASEPGE 164 (320)
Q Consensus 110 ~~~C~ICl~~~~~~~~~r~lp~C~H~FH~~Ci~~Wl~~-----~~~CP~CR~~l~~~~~~ 164 (320)
+..|+|||+....+... .|||+||..||-.++.. ...||+||..+...+..
T Consensus 186 ~~~CPICL~~~~~p~~t----~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~kdl~ 241 (513)
T KOG2164|consen 186 DMQCPICLEPPSVPVRT----NCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITLKDLL 241 (513)
T ss_pred CCcCCcccCCCCccccc----ccCceeeHHHHHHHHhhhcccCCccCCchhhhcccccee
Confidence 67899999997754333 59999999999988743 45899999988764433
No 32
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=98.07 E-value=2.9e-06 Score=58.19 Aligned_cols=38 Identities=32% Similarity=0.928 Sum_probs=22.4
Q ss_pred cccccccccCCc-ceEEecCCCccccHHHHHHHHhcC----CCCc
Q 048010 113 CAVCLNEFEDDE-TLRLIPKCDHVFHPECIDAWLESH----TTCP 152 (320)
Q Consensus 113 C~ICl~~~~~~~-~~r~lp~C~H~FH~~Ci~~Wl~~~----~~CP 152 (320)
|+||++ |...+ ..++|+ |||+|+.+||+.|++.. ..||
T Consensus 1 CpIc~e-~~~~~n~P~~L~-CGH~~c~~cl~~l~~~~~~~~~kCP 43 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLP-CGHVFCKDCLQKLSKKSDRNRFKCP 43 (43)
T ss_dssp -TTT-----TTSS-EEE-S-SS-EEEHHHHHHHHHH-S-S-B--T
T ss_pred CCcccc-ccCCCCCCEEEe-CccHHHHHHHHHHHhcCCCCeeeCc
Confidence 899999 76544 457787 99999999999999743 3676
No 33
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=98.02 E-value=1.1e-06 Score=66.56 Aligned_cols=49 Identities=35% Similarity=0.811 Sum_probs=23.8
Q ss_pred ccccccccccc-CCcc-eEEe--cCCCccccHHHHHHHHhc----C-------CCCcccccccc
Q 048010 111 LECAVCLNEFE-DDET-LRLI--PKCDHVFHPECIDAWLES----H-------TTCPVCRSNLA 159 (320)
Q Consensus 111 ~~C~ICl~~~~-~~~~-~r~l--p~C~H~FH~~Ci~~Wl~~----~-------~~CP~CR~~l~ 159 (320)
.+|.||++.+. .++. ..+- ++|++.||..||.+||.. + ..||.|+.+|.
T Consensus 3 ~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~ 66 (70)
T PF11793_consen 3 LECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPIS 66 (70)
T ss_dssp -S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEE
T ss_pred CCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeee
Confidence 57999999876 3322 1222 269999999999999953 1 15999999875
No 34
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.99 E-value=2.3e-06 Score=77.98 Aligned_cols=44 Identities=39% Similarity=0.959 Sum_probs=38.9
Q ss_pred CCCcccccccccccCCcceEEecCCCccccHHHHHHHHhcCCCCcccc
Q 048010 108 KGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCR 155 (320)
Q Consensus 108 ~~~~~C~ICl~~~~~~~~~r~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR 155 (320)
.+...|+||++.|.+. ++++ |+|.||..||..|+.....||.||
T Consensus 11 ~~~~~C~iC~~~~~~p---~~l~-C~H~~c~~C~~~~~~~~~~Cp~cr 54 (386)
T KOG2177|consen 11 QEELTCPICLEYFREP---VLLP-CGHNFCRACLTRSWEGPLSCPVCR 54 (386)
T ss_pred cccccChhhHHHhhcC---cccc-ccchHhHHHHHHhcCCCcCCcccC
Confidence 3567899999999998 6676 999999999999988666899999
No 35
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=97.96 E-value=6.4e-06 Score=62.60 Aligned_cols=48 Identities=25% Similarity=0.540 Sum_probs=36.5
Q ss_pred CcccccccccccCCcceEEecCCCccccHHHHHHHHhc-CCCCccccccccCC
Q 048010 110 ALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLES-HTTCPVCRSNLASE 161 (320)
Q Consensus 110 ~~~C~ICl~~~~~~~~~r~lp~C~H~FH~~Ci~~Wl~~-~~~CP~CR~~l~~~ 161 (320)
.+.|+||.+-|.++ .+++ |||.|...||..||+. +.+||+|+.++...
T Consensus 4 ~f~CpIt~~lM~dP---Vi~~-~G~tyer~~I~~~l~~~~~~~P~t~~~l~~~ 52 (73)
T PF04564_consen 4 EFLCPITGELMRDP---VILP-SGHTYERSAIERWLEQNGGTDPFTRQPLSES 52 (73)
T ss_dssp GGB-TTTSSB-SSE---EEET-TSEEEEHHHHHHHHCTTSSB-TTT-SB-SGG
T ss_pred ccCCcCcCcHhhCc---eeCC-cCCEEcHHHHHHHHHcCCCCCCCCCCcCCcc
Confidence 46799999999985 3456 9999999999999988 88999999888643
No 36
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.95 E-value=6.1e-06 Score=78.75 Aligned_cols=51 Identities=22% Similarity=0.557 Sum_probs=37.4
Q ss_pred CcccccccccccCCcc--eEEecCCCccccHHHHHHHH-hcCCCCccccccccCC
Q 048010 110 ALECAVCLNEFEDDET--LRLIPKCDHVFHPECIDAWL-ESHTTCPVCRSNLASE 161 (320)
Q Consensus 110 ~~~C~ICl~~~~~~~~--~r~lp~C~H~FH~~Ci~~Wl-~~~~~CP~CR~~l~~~ 161 (320)
+..|+||+.+--.... +.+. .|||.||..||+..+ .....||.|+..+...
T Consensus 3 ~~~CP~Ck~~~y~np~~kl~i~-~CGH~~C~sCv~~l~~~~~~~CP~C~~~lrk~ 56 (309)
T TIGR00570 3 DQGCPRCKTTKYRNPSLKLMVN-VCGHTLCESCVDLLFVRGSGSCPECDTPLRKN 56 (309)
T ss_pred CCCCCcCCCCCccCcccccccC-CCCCcccHHHHHHHhcCCCCCCCCCCCccchh
Confidence 3579999997433333 3333 499999999999966 4566899999887643
No 37
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=97.91 E-value=4.5e-06 Score=78.31 Aligned_cols=47 Identities=30% Similarity=0.656 Sum_probs=39.8
Q ss_pred CCcccccccccccCCcceEEecCCCccccHHHHHHHHhcCCCCcccccccc
Q 048010 109 GALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLA 159 (320)
Q Consensus 109 ~~~~C~ICl~~~~~~~~~r~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~ 159 (320)
..+.|-||-+-|..+- .. .|||.||.-||...|..+..||+||.+..
T Consensus 24 s~lrC~IC~~~i~ip~---~T-tCgHtFCslCIR~hL~~qp~CP~Cr~~~~ 70 (391)
T COG5432 24 SMLRCRICDCRISIPC---ET-TCGHTFCSLCIRRHLGTQPFCPVCREDPC 70 (391)
T ss_pred hHHHhhhhhheeecce---ec-ccccchhHHHHHHHhcCCCCCccccccHH
Confidence 4568999999987542 23 59999999999999999999999999764
No 38
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=97.90 E-value=3.5e-06 Score=80.49 Aligned_cols=48 Identities=29% Similarity=0.797 Sum_probs=41.3
Q ss_pred CCcccccccccccCCcceEEecCCCccccHHHHHHHHhcCCCCccccccccC
Q 048010 109 GALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLAS 160 (320)
Q Consensus 109 ~~~~C~ICl~~~~~~~~~r~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~ 160 (320)
.-+.|.||.+-|..+ .+.| |+|.||.-||..+|..+..||.|+.++.+
T Consensus 22 ~lLRC~IC~eyf~ip---~itp-CsHtfCSlCIR~~L~~~p~CP~C~~~~~E 69 (442)
T KOG0287|consen 22 DLLRCGICFEYFNIP---MITP-CSHTFCSLCIRKFLSYKPQCPTCCVTVTE 69 (442)
T ss_pred HHHHHhHHHHHhcCc---eecc-ccchHHHHHHHHHhccCCCCCceecccch
Confidence 446899999999864 4455 99999999999999999999999997753
No 39
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.85 E-value=6.2e-06 Score=80.04 Aligned_cols=46 Identities=35% Similarity=1.013 Sum_probs=34.5
Q ss_pred cccccccccccCCcceEEecCCCccccHHHHHHHHhc---CCCCccccc
Q 048010 111 LECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLES---HTTCPVCRS 156 (320)
Q Consensus 111 ~~C~ICl~~~~~~~~~r~lp~C~H~FH~~Ci~~Wl~~---~~~CP~CR~ 156 (320)
-+|.||-+-+.....+.-...|||+||..|+..|++. ...||+|+-
T Consensus 5 A~C~Ic~d~~p~~~~l~~i~~cGhifh~~cl~qwfe~~Ps~R~cpic~i 53 (465)
T KOG0827|consen 5 AECHICIDGRPNDHELGPIGTCGHIFHTTCLTQWFEGDPSNRGCPICQI 53 (465)
T ss_pred ceeeEeccCCccccccccccchhhHHHHHHHHHHHccCCccCCCCceee
Confidence 4799994444444455545459999999999999975 357999993
No 40
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=97.82 E-value=7.3e-06 Score=80.85 Aligned_cols=48 Identities=35% Similarity=0.884 Sum_probs=38.0
Q ss_pred CCcccccccccccCCcc-eEEecCCCccccHHHHHHHHhcCCCCcccccccc
Q 048010 109 GALECAVCLNEFEDDET-LRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLA 159 (320)
Q Consensus 109 ~~~~C~ICl~~~~~~~~-~r~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~ 159 (320)
+...|+|||+-+..... ++... |.|.||..|+..|- ..+||+||.-..
T Consensus 174 ELPTCpVCLERMD~s~~gi~t~~-c~Hsfh~~cl~~w~--~~scpvcR~~q~ 222 (493)
T KOG0804|consen 174 ELPTCPVCLERMDSSTTGILTIL-CNHSFHCSCLMKWW--DSSCPVCRYCQS 222 (493)
T ss_pred cCCCcchhHhhcCccccceeeee-cccccchHHHhhcc--cCcChhhhhhcC
Confidence 34579999999987652 34444 99999999999993 468999998654
No 41
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.72 E-value=2.2e-05 Score=75.77 Aligned_cols=49 Identities=29% Similarity=0.796 Sum_probs=41.0
Q ss_pred CCCcccccccccccCCcceEEecCCCcc-ccHHHHHHHHhcCCCCccccccccC
Q 048010 108 KGALECAVCLNEFEDDETLRLIPKCDHV-FHPECIDAWLESHTTCPVCRSNLAS 160 (320)
Q Consensus 108 ~~~~~C~ICl~~~~~~~~~r~lp~C~H~-FH~~Ci~~Wl~~~~~CP~CR~~l~~ 160 (320)
+...+|.|||.+-.+ +.+|| |.|. .|..|-+...-.++.||+||.++..
T Consensus 288 ~~gkeCVIClse~rd---t~vLP-CRHLCLCs~Ca~~Lr~q~n~CPICRqpi~~ 337 (349)
T KOG4265|consen 288 ESGKECVICLSESRD---TVVLP-CRHLCLCSGCAKSLRYQTNNCPICRQPIEE 337 (349)
T ss_pred cCCCeeEEEecCCcc---eEEec-chhhehhHhHHHHHHHhhcCCCccccchHh
Confidence 346799999999766 77888 9996 7889988877778899999998863
No 42
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.67 E-value=1.8e-05 Score=76.91 Aligned_cols=51 Identities=27% Similarity=0.887 Sum_probs=41.0
Q ss_pred CCcccccccccccCCc----ceEEecCCCccccHHHHHHHH--hc-----CCCCcccccccc
Q 048010 109 GALECAVCLNEFEDDE----TLRLIPKCDHVFHPECIDAWL--ES-----HTTCPVCRSNLA 159 (320)
Q Consensus 109 ~~~~C~ICl~~~~~~~----~~r~lp~C~H~FH~~Ci~~Wl--~~-----~~~CP~CR~~l~ 159 (320)
.+.+|.||++...+.. ...++|+|.|.||..||+.|- .. .+.||.||....
T Consensus 160 ~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~ 221 (344)
T KOG1039|consen 160 SEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSS 221 (344)
T ss_pred ccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCccc
Confidence 3568999999987643 356778999999999999997 33 468999998664
No 43
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.60 E-value=0.00062 Score=62.12 Aligned_cols=54 Identities=24% Similarity=0.624 Sum_probs=45.6
Q ss_pred CCCcccccccccccCCcceEEecCCCccccHHHHHHHHhc--------CCCCccccccccCCCC
Q 048010 108 KGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLES--------HTTCPVCRSNLASEPG 163 (320)
Q Consensus 108 ~~~~~C~ICl~~~~~~~~~r~lp~C~H~FH~~Ci~~Wl~~--------~~~CP~CR~~l~~~~~ 163 (320)
+....|..|--.+..++.+|+. |-|+||.+|+++|-.. ...||.|-.+|+++..
T Consensus 48 DY~pNC~LC~t~La~gdt~RLv--CyhlfHW~ClneraA~lPanTAPaGyqCP~Cs~eiFPp~N 109 (299)
T KOG3970|consen 48 DYNPNCRLCNTPLASGDTTRLV--CYHLFHWKCLNERAANLPANTAPAGYQCPCCSQEIFPPIN 109 (299)
T ss_pred CCCCCCceeCCccccCcceeeh--hhhhHHHHHhhHHHhhCCCcCCCCcccCCCCCCccCCCcc
Confidence 4556799999999999999884 9999999999999753 3479999999986543
No 44
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=97.59 E-value=1.4e-05 Score=83.28 Aligned_cols=48 Identities=29% Similarity=0.621 Sum_probs=40.6
Q ss_pred cccccccccccCCcceEEecCCCccccHHHHHHHHhcCCCCcccccccc
Q 048010 111 LECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLA 159 (320)
Q Consensus 111 ~~C~ICl~~~~~~~~~r~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~ 159 (320)
..|++|+..+.++......+ |+|.||..||+.|-+...+||+||..+.
T Consensus 124 ~~CP~Ci~s~~DqL~~~~k~-c~H~FC~~Ci~sWsR~aqTCPiDR~EF~ 171 (1134)
T KOG0825|consen 124 NQCPNCLKSCNDQLEESEKH-TAHYFCEECVGSWSRCAQTCPVDRGEFG 171 (1134)
T ss_pred hhhhHHHHHHHHHhhccccc-cccccHHHHhhhhhhhcccCchhhhhhh
Confidence 46888888888776555554 9999999999999999999999999764
No 45
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=97.54 E-value=1.8e-05 Score=58.55 Aligned_cols=47 Identities=28% Similarity=0.803 Sum_probs=24.7
Q ss_pred cccccccccccCCcceEEecCCCccccHHHHHHHHhcCCCCccccccccCCC
Q 048010 111 LECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLASEP 162 (320)
Q Consensus 111 ~~C~ICl~~~~~~~~~r~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~~~ 162 (320)
..|++|.+-++.+.. +..|.|+|+..||..-+.. .||+|+.+...++
T Consensus 8 LrCs~C~~~l~~pv~---l~~CeH~fCs~Ci~~~~~~--~CPvC~~Paw~qD 54 (65)
T PF14835_consen 8 LRCSICFDILKEPVC---LGGCEHIFCSSCIRDCIGS--ECPVCHTPAWIQD 54 (65)
T ss_dssp TS-SSS-S--SS-B------SSS--B-TTTGGGGTTT--B-SSS--B-S-SS
T ss_pred cCCcHHHHHhcCCce---eccCccHHHHHHhHHhcCC--CCCCcCChHHHHH
Confidence 579999999887533 2369999999999886554 4999999887554
No 46
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.48 E-value=1.6e-05 Score=76.51 Aligned_cols=50 Identities=30% Similarity=0.632 Sum_probs=41.2
Q ss_pred CCcccccccccccCCcceEEecCCCccccHHHHHHHHh-cCCCCccccccccCC
Q 048010 109 GALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLE-SHTTCPVCRSNLASE 161 (320)
Q Consensus 109 ~~~~C~ICl~~~~~~~~~r~lp~C~H~FH~~Ci~~Wl~-~~~~CP~CR~~l~~~ 161 (320)
.+..|+|||+-++. .+..+.|.|-||.+||..-++ ..+.||.||+.+...
T Consensus 42 ~~v~c~icl~llk~---tmttkeClhrfc~~ci~~a~r~gn~ecptcRk~l~Sk 92 (381)
T KOG0311|consen 42 IQVICPICLSLLKK---TMTTKECLHRFCFDCIWKALRSGNNECPTCRKKLVSK 92 (381)
T ss_pred hhhccHHHHHHHHh---hcccHHHHHHHHHHHHHHHHHhcCCCCchHHhhcccc
Confidence 46789999999876 344557999999999999986 477999999988653
No 47
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=97.42 E-value=5.5e-05 Score=71.41 Aligned_cols=51 Identities=31% Similarity=0.824 Sum_probs=42.2
Q ss_pred CcccccccccccCCcceEEecCCCccccHHHHHHHHh-----------------------cCCCCccccccccCC
Q 048010 110 ALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLE-----------------------SHTTCPVCRSNLASE 161 (320)
Q Consensus 110 ~~~C~ICl~~~~~~~~~r~lp~C~H~FH~~Ci~~Wl~-----------------------~~~~CP~CR~~l~~~ 161 (320)
...|.|||.-|.+++....++ |.|.||..|+..+|. .+..||+||..|..+
T Consensus 115 ~gqCvICLygfa~~~~ft~T~-C~Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~~e 188 (368)
T KOG4445|consen 115 NGQCVICLYGFASSPAFTVTA-CDHYMHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIKIE 188 (368)
T ss_pred CCceEEEEEeecCCCceeeeh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhcccc
Confidence 357999999999999888887 999999999988873 023699999988654
No 48
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=97.42 E-value=9e-05 Score=72.40 Aligned_cols=45 Identities=33% Similarity=1.008 Sum_probs=37.7
Q ss_pred ccccccccccCCcceEEecCCCccccHHHHHHHHhc--CCCCccccccccC
Q 048010 112 ECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLES--HTTCPVCRSNLAS 160 (320)
Q Consensus 112 ~C~ICl~~~~~~~~~r~lp~C~H~FH~~Ci~~Wl~~--~~~CP~CR~~l~~ 160 (320)
-|.||-+. +..+++.| |||..|..|+..|-.+ .++||.||..|..
T Consensus 371 LCKICaen---dKdvkIEP-CGHLlCt~CLa~WQ~sd~gq~CPFCRcEIKG 417 (563)
T KOG1785|consen 371 LCKICAEN---DKDVKIEP-CGHLLCTSCLAAWQDSDEGQTCPFCRCEIKG 417 (563)
T ss_pred HHHHhhcc---CCCccccc-ccchHHHHHHHhhcccCCCCCCCceeeEecc
Confidence 59999876 34588888 9999999999999854 5799999998853
No 49
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.41 E-value=0.0001 Score=72.23 Aligned_cols=49 Identities=27% Similarity=0.869 Sum_probs=36.8
Q ss_pred CcccccccccccCC-cceEEecCCCccccHHHHHHHHh--cCCCCccccccc
Q 048010 110 ALECAVCLNEFEDD-ETLRLIPKCDHVFHPECIDAWLE--SHTTCPVCRSNL 158 (320)
Q Consensus 110 ~~~C~ICl~~~~~~-~~~r~lp~C~H~FH~~Ci~~Wl~--~~~~CP~CR~~l 158 (320)
+..|+||++.+... +.....+.|||.|-.+||+.||. ....||.|...-
T Consensus 4 g~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~k~~~~~cp~c~~ka 55 (463)
T KOG1645|consen 4 GTTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLGKKTKMQCPLCSGKA 55 (463)
T ss_pred cccCceeeeeeeecCceEEeeecccccccHHHHHHHHhhhhhhhCcccCChh
Confidence 46899999999753 33333346999999999999994 244799996543
No 50
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.37 E-value=5.4e-05 Score=54.15 Aligned_cols=46 Identities=26% Similarity=0.648 Sum_probs=32.6
Q ss_pred CcccccccccccCCcceEEecCCCcc-ccHHHH-HHHHhcCCCCcccccccc
Q 048010 110 ALECAVCLNEFEDDETLRLIPKCDHV-FHPECI-DAWLESHTTCPVCRSNLA 159 (320)
Q Consensus 110 ~~~C~ICl~~~~~~~~~r~lp~C~H~-FH~~Ci-~~Wl~~~~~CP~CR~~l~ 159 (320)
.+||.||++.-.+. + +..|||. .+.+|- +.|-..+..||+||+++.
T Consensus 7 ~dECTICye~pvds--V--lYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi~ 54 (62)
T KOG4172|consen 7 SDECTICYEHPVDS--V--LYTCGHMCMCYACGLRLKKALHGCCPICRAPIK 54 (62)
T ss_pred ccceeeeccCcchH--H--HHHcchHHhHHHHHHHHHHccCCcCcchhhHHH
Confidence 37999999985543 2 1249996 466664 445457889999999874
No 51
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.20 E-value=0.00017 Score=68.23 Aligned_cols=48 Identities=31% Similarity=0.527 Sum_probs=38.7
Q ss_pred cccccccccccCCcceEEecCCCccccHHHHHHHHhcC-CCCccccccccCCC
Q 048010 111 LECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESH-TTCPVCRSNLASEP 162 (320)
Q Consensus 111 ~~C~ICl~~~~~~~~~r~lp~C~H~FH~~Ci~~Wl~~~-~~CP~CR~~l~~~~ 162 (320)
.+|+||+.....+ ..|+ |+|.||.-||+--.+.. .+|++||.++...-
T Consensus 8 ~eC~IC~nt~n~P---v~l~-C~HkFCyiCiKGsy~ndk~~CavCR~pids~i 56 (324)
T KOG0824|consen 8 KECLICYNTGNCP---VNLY-CFHKFCYICIKGSYKNDKKTCAVCRFPIDSTI 56 (324)
T ss_pred CcceeeeccCCcC---cccc-ccchhhhhhhcchhhcCCCCCceecCCCCcch
Confidence 5899999987665 3444 99999999999877654 56999999997543
No 52
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=97.17 E-value=0.00019 Score=69.95 Aligned_cols=46 Identities=37% Similarity=0.938 Sum_probs=38.6
Q ss_pred CcccccccccccC-CcceEEecCCCccccHHHHHHHHhcC--CCCccccc
Q 048010 110 ALECAVCLNEFED-DETLRLIPKCDHVFHPECIDAWLESH--TTCPVCRS 156 (320)
Q Consensus 110 ~~~C~ICl~~~~~-~~~~r~lp~C~H~FH~~Ci~~Wl~~~--~~CP~CR~ 156 (320)
+.-|..|-+.+-. ++.+.-|| |.|+||..|+...|..+ .+||.||+
T Consensus 365 ~L~Cg~CGe~~Glk~e~LqALp-CsHIfH~rCl~e~L~~n~~rsCP~Crk 413 (518)
T KOG1941|consen 365 ELYCGLCGESIGLKNERLQALP-CSHIFHLRCLQEILENNGTRSCPNCRK 413 (518)
T ss_pred hhhhhhhhhhhcCCcccccccc-hhHHHHHHHHHHHHHhCCCCCCccHHH
Confidence 4679999998864 45788888 99999999999999654 58999994
No 53
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=97.09 E-value=0.00015 Score=75.89 Aligned_cols=49 Identities=35% Similarity=0.860 Sum_probs=38.6
Q ss_pred CCcccccccccccCCcceEEecCCCccccHHHHHHHHh-cCCCCccccccccCC
Q 048010 109 GALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLE-SHTTCPVCRSNLASE 161 (320)
Q Consensus 109 ~~~~C~ICl~~~~~~~~~r~lp~C~H~FH~~Ci~~Wl~-~~~~CP~CR~~l~~~ 161 (320)
+-..|++|-..+++.. +++|+|+||..||..-+. ++..||.|-+.+...
T Consensus 642 ~~LkCs~Cn~R~Kd~v----I~kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFgan 691 (698)
T KOG0978|consen 642 ELLKCSVCNTRWKDAV----ITKCGHVFCEECVQTRYETRQRKCPKCNAAFGAN 691 (698)
T ss_pred hceeCCCccCchhhHH----HHhcchHHHHHHHHHHHHHhcCCCCCCCCCCCcc
Confidence 4568999997766532 337999999999999995 567899998877543
No 54
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=96.73 E-value=0.00069 Score=67.29 Aligned_cols=50 Identities=32% Similarity=0.764 Sum_probs=42.5
Q ss_pred CCcccccccccccCCcceEEecCCCccccHHHHHHHHhcCCCCccccccccCC
Q 048010 109 GALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLASE 161 (320)
Q Consensus 109 ~~~~C~ICl~~~~~~~~~r~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~~ 161 (320)
..+.|+||...+.++... . .|||.||..|+..|+..+..||.|+..+...
T Consensus 20 ~~l~C~~C~~vl~~p~~~--~-~cgh~fC~~C~~~~~~~~~~cp~~~~~~~~~ 69 (391)
T KOG0297|consen 20 ENLLCPICMSVLRDPVQT--T-TCGHRFCAGCLLESLSNHQKCPVCRQELTQA 69 (391)
T ss_pred ccccCccccccccCCCCC--C-CCCCcccccccchhhccCcCCcccccccchh
Confidence 457899999999987553 2 4999999999999999999999998877543
No 55
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=96.72 E-value=0.00067 Score=57.38 Aligned_cols=35 Identities=17% Similarity=0.730 Sum_probs=29.3
Q ss_pred CcccccccccccCCcceEEecCCC------ccccHHHHHHHH
Q 048010 110 ALECAVCLNEFEDDETLRLIPKCD------HVFHPECIDAWL 145 (320)
Q Consensus 110 ~~~C~ICl~~~~~~~~~r~lp~C~------H~FH~~Ci~~Wl 145 (320)
..||+||++.+..++-+..++ |+ |.||.+|+..|-
T Consensus 26 ~~EC~IC~~~I~~~~GvV~vt-~~g~lnLEkmfc~~C~~rw~ 66 (134)
T PF05883_consen 26 TVECQICFDRIDNNDGVVYVT-DGGTLNLEKMFCADCDKRWR 66 (134)
T ss_pred CeeehhhhhhhhcCCCEEEEe-cCCeehHHHHHHHHHHHHHH
Confidence 578999999999955566666 66 999999999994
No 56
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=96.60 E-value=0.0011 Score=48.21 Aligned_cols=42 Identities=36% Similarity=0.773 Sum_probs=27.6
Q ss_pred CCcccccccccccCCcceEEecCCCccccHHHHHHHHhc--CCCCcc
Q 048010 109 GALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLES--HTTCPV 153 (320)
Q Consensus 109 ~~~~C~ICl~~~~~~~~~r~lp~C~H~FH~~Ci~~Wl~~--~~~CP~ 153 (320)
-...|+|.+..|+++ ++-. +|+|+|-.+.|..||.. ...||+
T Consensus 10 ~~~~CPiT~~~~~~P--V~s~-~C~H~fek~aI~~~i~~~~~~~CPv 53 (57)
T PF11789_consen 10 ISLKCPITLQPFEDP--VKSK-KCGHTFEKEAILQYIQRNGSKRCPV 53 (57)
T ss_dssp --SB-TTTSSB-SSE--EEES-SS--EEEHHHHHHHCTTTS-EE-SC
T ss_pred eccCCCCcCChhhCC--cCcC-CCCCeecHHHHHHHHHhcCCCCCCC
Confidence 346899999999975 4434 59999999999999943 457998
No 57
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.43 E-value=0.0017 Score=64.43 Aligned_cols=49 Identities=37% Similarity=0.870 Sum_probs=41.9
Q ss_pred CCCcccccccccccCCcceEEecCCCccccHHHHHHHHhcCCCCccccccccC
Q 048010 108 KGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLAS 160 (320)
Q Consensus 108 ~~~~~C~ICl~~~~~~~~~r~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~ 160 (320)
..+++|.||+..+..... +| |||.|+..||+.-+.....||.||..+..
T Consensus 82 ~sef~c~vc~~~l~~pv~---tp-cghs~c~~Cl~r~ld~~~~cp~Cr~~l~e 130 (398)
T KOG4159|consen 82 RSEFECCVCSRALYPPVV---TP-CGHSFCLECLDRSLDQETECPLCRDELVE 130 (398)
T ss_pred cchhhhhhhHhhcCCCcc---cc-ccccccHHHHHHHhccCCCCccccccccc
Confidence 467899999998887533 36 99999999999988878889999999975
No 58
>KOG0801 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.32 E-value=0.0013 Score=57.30 Aligned_cols=29 Identities=31% Similarity=0.844 Sum_probs=26.5
Q ss_pred CCcccccccccccCCcceEEecCCCccccH
Q 048010 109 GALECAVCLNEFEDDETLRLIPKCDHVFHP 138 (320)
Q Consensus 109 ~~~~C~ICl~~~~~~~~~r~lp~C~H~FH~ 138 (320)
..-||.||||+++.++++..|| |--+||+
T Consensus 176 dkGECvICLEdL~~GdtIARLP-CLCIYHK 204 (205)
T KOG0801|consen 176 DKGECVICLEDLEAGDTIARLP-CLCIYHK 204 (205)
T ss_pred cCCcEEEEhhhccCCCceeccc-eEEEeec
Confidence 4568999999999999999999 9999996
No 59
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=96.28 E-value=0.0055 Score=58.83 Aligned_cols=47 Identities=26% Similarity=0.455 Sum_probs=37.3
Q ss_pred CCcccccccccccCCcceEEecCCCccccHHHHHHHHhcCCCCccccccc
Q 048010 109 GALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNL 158 (320)
Q Consensus 109 ~~~~C~ICl~~~~~~~~~r~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l 158 (320)
....|+||+.....+-.+. .-|-+||..||-.++..+..||+=-.++
T Consensus 299 ~~~~CpvClk~r~Nptvl~---vSGyVfCY~Ci~~Yv~~~~~CPVT~~p~ 345 (357)
T KOG0826|consen 299 DREVCPVCLKKRQNPTVLE---VSGYVFCYPCIFSYVVNYGHCPVTGYPA 345 (357)
T ss_pred ccccChhHHhccCCCceEE---ecceEEeHHHHHHHHHhcCCCCccCCcc
Confidence 3467999999987754432 2699999999999999999999865443
No 60
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=96.26 E-value=0.0029 Score=70.14 Aligned_cols=52 Identities=25% Similarity=0.694 Sum_probs=40.6
Q ss_pred CCCCcccccccccccCCcceEEecCCCccccHHHHHHHHhcC----------CCCcccccccc
Q 048010 107 GKGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESH----------TTCPVCRSNLA 159 (320)
Q Consensus 107 ~~~~~~C~ICl~~~~~~~~~r~lp~C~H~FH~~Ci~~Wl~~~----------~~CP~CR~~l~ 159 (320)
.+.++.|.||+.+--.......|. |+|+||..|...-|+++ .+||+|..++.
T Consensus 3483 QD~DDmCmICFTE~L~AAP~IqL~-C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~In 3544 (3738)
T KOG1428|consen 3483 QDADDMCMICFTEALSAAPAIQLD-CSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNKIN 3544 (3738)
T ss_pred cccCceEEEEehhhhCCCcceecC-CccchhHHHHHHHHHhcccCCeeEEeeeecccccchhh
Confidence 346678999998876655555665 99999999998877653 27999998875
No 61
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=96.15 E-value=0.0037 Score=43.58 Aligned_cols=40 Identities=35% Similarity=1.082 Sum_probs=27.3
Q ss_pred cccccccccCCcceEEecCCC-----ccccHHHHHHHHh--cCCCCccc
Q 048010 113 CAVCLNEFEDDETLRLIPKCD-----HVFHPECIDAWLE--SHTTCPVC 154 (320)
Q Consensus 113 C~ICl~~~~~~~~~r~lp~C~-----H~FH~~Ci~~Wl~--~~~~CP~C 154 (320)
|-||+++-.+++.+ +.| |. -..|..|+..|+. ...+|++|
T Consensus 1 CrIC~~~~~~~~~l-i~p-C~C~Gs~~~vH~~CL~~W~~~~~~~~C~~C 47 (47)
T PF12906_consen 1 CRICLEGEEEDEPL-ISP-CRCKGSMKYVHRSCLERWIRESGNRKCEIC 47 (47)
T ss_dssp ETTTTEE-SSSS-E-E-S-SS-SSCCGSEECCHHHHHHHHHT-SB-TTT
T ss_pred CeEeCCcCCCCCce-ecc-cccCCCcchhHHHHHHHHHHhcCCCcCCCC
Confidence 77999998776633 344 55 4789999999996 45679988
No 62
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=95.99 E-value=0.0036 Score=63.40 Aligned_cols=50 Identities=40% Similarity=0.850 Sum_probs=39.0
Q ss_pred CCCcccccccccccCCcceEEecCCCccccHHHHHHHHhc-----CCCCccccccccCC
Q 048010 108 KGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLES-----HTTCPVCRSNLASE 161 (320)
Q Consensus 108 ~~~~~C~ICl~~~~~~~~~r~lp~C~H~FH~~Ci~~Wl~~-----~~~CP~CR~~l~~~ 161 (320)
++..+|.+|.+.-++.-.. .|.|.||.-||.+++.. +.+||+|...+.-+
T Consensus 534 k~~~~C~lc~d~aed~i~s----~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~LsiD 588 (791)
T KOG1002|consen 534 KGEVECGLCHDPAEDYIES----SCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLSID 588 (791)
T ss_pred cCceeecccCChhhhhHhh----hhhHHHHHHHHHHHHHhhhcccCCCCcccccccccc
Confidence 4667999999986654332 69999999999999843 56999998877543
No 63
>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]
Probab=95.99 E-value=0.0031 Score=66.89 Aligned_cols=51 Identities=31% Similarity=0.780 Sum_probs=39.2
Q ss_pred cCCCCcccccccccccCCcceEEecCCCccccHHHHHHHHhc-------CCCCccccc
Q 048010 106 VGKGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLES-------HTTCPVCRS 156 (320)
Q Consensus 106 ~~~~~~~C~ICl~~~~~~~~~r~lp~C~H~FH~~Ci~~Wl~~-------~~~CP~CR~ 156 (320)
...+.++|.||++.+..-..+---..|-|+||..||..|-++ .-.||.|..
T Consensus 187 l~~~~yeCmIC~e~I~~t~~~WSC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cqs 244 (950)
T KOG1952|consen 187 LSNRKYECMICTERIKRTAPVWSCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQS 244 (950)
T ss_pred HhcCceEEEEeeeeccccCCceecchhhhhhhHHHHHHHHHHhhhccCccccCCcccc
Confidence 345678999999999876655333358899999999999753 226999984
No 64
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.89 E-value=0.0074 Score=55.92 Aligned_cols=53 Identities=17% Similarity=0.364 Sum_probs=47.0
Q ss_pred CCcccccccccccCCcceEEecCCCccccHHHHHHHHhcCCCCccccccccCC
Q 048010 109 GALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLASE 161 (320)
Q Consensus 109 ~~~~C~ICl~~~~~~~~~r~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~~ 161 (320)
.-+.|+||.+.+...-.+..|.+|||+|+.+|++..+.....||+|-.++.+.
T Consensus 220 ~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~D~v~pv~d~plkdr 272 (303)
T KOG3039|consen 220 KRYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRKDMVDPVTDKPLKDR 272 (303)
T ss_pred cceecccchhhhcCccceEEeccCCcEeeHHHHHHhccccccccCCCCcCccc
Confidence 34679999999999888888888999999999999999999999998888644
No 65
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=95.84 E-value=0.0065 Score=57.69 Aligned_cols=47 Identities=34% Similarity=0.774 Sum_probs=36.9
Q ss_pred cccccccccccCCcceEEecCCCccccHHHHHHHH-hcCCCCccc-cccccC
Q 048010 111 LECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWL-ESHTTCPVC-RSNLAS 160 (320)
Q Consensus 111 ~~C~ICl~~~~~~~~~r~lp~C~H~FH~~Ci~~Wl-~~~~~CP~C-R~~l~~ 160 (320)
+.|+.|..-+...-+ . +.|+|.||.+||..-| .+...||.| |+++..
T Consensus 275 LkCplc~~Llrnp~k--T-~cC~~~fc~eci~~al~dsDf~CpnC~rkdvll 323 (427)
T COG5222 275 LKCPLCHCLLRNPMK--T-PCCGHTFCDECIGTALLDSDFKCPNCSRKDVLL 323 (427)
T ss_pred ccCcchhhhhhCccc--C-ccccchHHHHHHhhhhhhccccCCCcccccchh
Confidence 689999988776533 3 5699999999999776 677899999 555543
No 66
>PHA02862 5L protein; Provisional
Probab=95.84 E-value=0.0061 Score=52.17 Aligned_cols=46 Identities=20% Similarity=0.626 Sum_probs=34.7
Q ss_pred cccccccccccCCcceEEecCCC-----ccccHHHHHHHHhc--CCCCccccccccCC
Q 048010 111 LECAVCLNEFEDDETLRLIPKCD-----HVFHPECIDAWLES--HTTCPVCRSNLASE 161 (320)
Q Consensus 111 ~~C~ICl~~~~~~~~~r~lp~C~-----H~FH~~Ci~~Wl~~--~~~CP~CR~~l~~~ 161 (320)
..|-||+++-+++ + -| |. ...|.+|+..|+.. +..|++|+.++.-.
T Consensus 3 diCWIC~~~~~e~--~--~P-C~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~Ik 55 (156)
T PHA02862 3 DICWICNDVCDER--N--NF-CGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKYNIK 55 (156)
T ss_pred CEEEEecCcCCCC--c--cc-ccccCcchhHHHHHHHHHHhcCCCcCccCCCCeEEEE
Confidence 5799999985433 2 33 54 68899999999953 56899999988643
No 67
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.84 E-value=0.0076 Score=56.60 Aligned_cols=51 Identities=29% Similarity=0.546 Sum_probs=38.6
Q ss_pred cCCCCcccccccccccCCcceEEecCCCccccHHHHHHHHhc--CCCCcccccccc
Q 048010 106 VGKGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLES--HTTCPVCRSNLA 159 (320)
Q Consensus 106 ~~~~~~~C~ICl~~~~~~~~~r~lp~C~H~FH~~Ci~~Wl~~--~~~CP~CR~~l~ 159 (320)
....+.+|++|-+.-..+- .+. +|+|+||..||..-+.. ..+||.|-.++.
T Consensus 235 ~~t~~~~C~~Cg~~PtiP~--~~~-~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~ 287 (298)
T KOG2879|consen 235 TGTSDTECPVCGEPPTIPH--VIG-KCGHIYCYYCIATSRLWDASFTCPLCGENVE 287 (298)
T ss_pred cccCCceeeccCCCCCCCe--eec-cccceeehhhhhhhhcchhhcccCccCCCCc
Confidence 3456789999998865543 334 49999999999987653 468999977664
No 68
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.80 E-value=0.0053 Score=60.55 Aligned_cols=47 Identities=23% Similarity=0.774 Sum_probs=38.7
Q ss_pred CCcccccccccccCCcceEEecCCCccccHHHHHHHHhc--------CCCCccccc
Q 048010 109 GALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLES--------HTTCPVCRS 156 (320)
Q Consensus 109 ~~~~C~ICl~~~~~~~~~r~lp~C~H~FH~~Ci~~Wl~~--------~~~CP~CR~ 156 (320)
...+|.||+++.........+| |+|+||..|+..++.. .-.||-|.-
T Consensus 183 slf~C~ICf~e~~G~~c~~~lp-C~Hv~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~C 237 (445)
T KOG1814|consen 183 SLFDCCICFEEQMGQHCFKFLP-CSHVFCKSCLKDYFTIQIQEGQVSCLKCPDPKC 237 (445)
T ss_pred hcccceeeehhhcCcceeeecc-cchHHHHHHHHHHHHHhhhcceeeeecCCCCCC
Confidence 4578999999998888999998 9999999999999843 235776643
No 69
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=95.57 E-value=0.0032 Score=60.39 Aligned_cols=51 Identities=27% Similarity=0.636 Sum_probs=42.3
Q ss_pred CCCcccccccccccCCcceEEecCCCccccHHHHHHHHhcCCCCccccccccCC
Q 048010 108 KGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLASE 161 (320)
Q Consensus 108 ~~~~~C~ICl~~~~~~~~~r~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~~ 161 (320)
.....|.+|-.-|-+...+ . .|-|.||..||...|....+||.|...+-..
T Consensus 13 n~~itC~LC~GYliDATTI--~-eCLHTFCkSCivk~l~~~~~CP~C~i~ih~t 63 (331)
T KOG2660|consen 13 NPHITCRLCGGYLIDATTI--T-ECLHTFCKSCIVKYLEESKYCPTCDIVIHKT 63 (331)
T ss_pred ccceehhhccceeecchhH--H-HHHHHHHHHHHHHHHHHhccCCccceeccCc
Confidence 3456899999998886544 3 4999999999999999999999998877543
No 70
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=95.57 E-value=0.0063 Score=48.52 Aligned_cols=32 Identities=31% Similarity=0.810 Sum_probs=26.1
Q ss_pred CCcccccccccccCCcceEEecCCCccccHHHHH
Q 048010 109 GALECAVCLNEFEDDETLRLIPKCDHVFHPECID 142 (320)
Q Consensus 109 ~~~~C~ICl~~~~~~~~~r~lp~C~H~FH~~Ci~ 142 (320)
....|++|-..+.. ....+.| |||+||..|++
T Consensus 77 ~~~~C~vC~k~l~~-~~f~~~p-~~~v~H~~C~~ 108 (109)
T PF10367_consen 77 ESTKCSVCGKPLGN-SVFVVFP-CGHVVHYSCIK 108 (109)
T ss_pred CCCCccCcCCcCCC-ceEEEeC-CCeEEeccccc
Confidence 45679999999987 4555666 99999999975
No 71
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.49 E-value=0.0086 Score=58.16 Aligned_cols=44 Identities=34% Similarity=0.734 Sum_probs=33.1
Q ss_pred CCcccccccccccCCcceEEecCCCccccHHHHHHHHhcCCCCcccccccc
Q 048010 109 GALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLA 159 (320)
Q Consensus 109 ~~~~C~ICl~~~~~~~~~r~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~ 159 (320)
..+.|.||+++..+ ...+| |||+-+ |...-... ..||+||..+.
T Consensus 304 ~p~lcVVcl~e~~~---~~fvp-cGh~cc--ct~cs~~l-~~CPvCR~rI~ 347 (355)
T KOG1571|consen 304 QPDLCVVCLDEPKS---AVFVP-CGHVCC--CTLCSKHL-PQCPVCRQRIR 347 (355)
T ss_pred CCCceEEecCCccc---eeeec-CCcEEE--chHHHhhC-CCCchhHHHHH
Confidence 34679999999887 55667 999955 77765433 34999998774
No 72
>PHA03096 p28-like protein; Provisional
Probab=95.44 E-value=0.0074 Score=57.50 Aligned_cols=46 Identities=24% Similarity=0.590 Sum_probs=34.0
Q ss_pred cccccccccccCC----cceEEecCCCccccHHHHHHHHhc---CCCCccccc
Q 048010 111 LECAVCLNEFEDD----ETLRLIPKCDHVFHPECIDAWLES---HTTCPVCRS 156 (320)
Q Consensus 111 ~~C~ICl~~~~~~----~~~r~lp~C~H~FH~~Ci~~Wl~~---~~~CP~CR~ 156 (320)
.+|.||++..... ....+|+.|.|.|+..||..|-.. ..+||.||.
T Consensus 179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~~~~~~e~~~~c~~ 231 (284)
T PHA03096 179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMTESLYKETEPENRR 231 (284)
T ss_pred hhcccchhhhhhhccccccccccccCCcHHHHHHHHHHHHhhhhcccCccccc
Confidence 5799999988753 244678899999999999999743 234544443
No 73
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=95.41 E-value=0.012 Score=51.15 Aligned_cols=49 Identities=20% Similarity=0.713 Sum_probs=35.3
Q ss_pred CCcccccccccccCCcceEEec-CCCc---cccHHHHHHHHhc--CCCCccccccccCC
Q 048010 109 GALECAVCLNEFEDDETLRLIP-KCDH---VFHPECIDAWLES--HTTCPVCRSNLASE 161 (320)
Q Consensus 109 ~~~~C~ICl~~~~~~~~~r~lp-~C~H---~FH~~Ci~~Wl~~--~~~CP~CR~~l~~~ 161 (320)
.+.+|-||.++-.+ .. .| +|.. ..|.+|+..|+.. ..+|++|..++.-.
T Consensus 7 ~~~~CRIC~~~~~~--~~--~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~i~ 61 (162)
T PHA02825 7 MDKCCWICKDEYDV--VT--NYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPYNIK 61 (162)
T ss_pred CCCeeEecCCCCCC--cc--CCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeEEEE
Confidence 45689999998542 22 23 3544 6699999999953 56899999987543
No 74
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=95.35 E-value=0.013 Score=41.07 Aligned_cols=45 Identities=24% Similarity=0.623 Sum_probs=22.2
Q ss_pred cccccccccCCc-ceEEecCCCccccHHHHHHHHh-cCCCCccccccc
Q 048010 113 CAVCLNEFEDDE-TLRLIPKCDHVFHPECIDAWLE-SHTTCPVCRSNL 158 (320)
Q Consensus 113 C~ICl~~~~~~~-~~r~lp~C~H~FH~~Ci~~Wl~-~~~~CP~CR~~l 158 (320)
|++|.+++...+ .+.-- .|++.++..|...-++ ....||-||.+.
T Consensus 1 cp~C~e~~d~~d~~~~PC-~Cgf~IC~~C~~~i~~~~~g~CPgCr~~Y 47 (48)
T PF14570_consen 1 CPLCDEELDETDKDFYPC-ECGFQICRFCYHDILENEGGRCPGCREPY 47 (48)
T ss_dssp -TTTS-B--CCCTT--SS-TTS----HHHHHHHTTSS-SB-TTT--B-
T ss_pred CCCcccccccCCCccccC-cCCCcHHHHHHHHHHhccCCCCCCCCCCC
Confidence 789999995443 33223 4889999999888776 477999999875
No 75
>PF04641 Rtf2: Rtf2 RING-finger
Probab=95.04 E-value=0.026 Score=53.02 Aligned_cols=54 Identities=24% Similarity=0.594 Sum_probs=43.5
Q ss_pred CCCCcccccccccccCCcceEEecCCCccccHHHHHHHHhcCCCCccccccccCC
Q 048010 107 GKGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLASE 161 (320)
Q Consensus 107 ~~~~~~C~ICl~~~~~~~~~r~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~~ 161 (320)
....+.|+|+..+|........+..|||+|-..||.+- +....||+|-.++...
T Consensus 110 ~~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~-k~~~~Cp~c~~~f~~~ 163 (260)
T PF04641_consen 110 SEGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKEL-KKSKKCPVCGKPFTEE 163 (260)
T ss_pred CCceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhh-cccccccccCCccccC
Confidence 34668899999999776666666669999999999996 3356799999888743
No 76
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=94.92 E-value=0.013 Score=52.74 Aligned_cols=45 Identities=22% Similarity=0.588 Sum_probs=37.7
Q ss_pred CcccccccccccCCcceEEecCCCccccHHHHHHHHhcCCCCccccccc
Q 048010 110 ALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNL 158 (320)
Q Consensus 110 ~~~C~ICl~~~~~~~~~r~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l 158 (320)
...|-||-++|+.+... .|||.||..|...=++....|-+|-+..
T Consensus 196 PF~C~iCKkdy~spvvt----~CGH~FC~~Cai~~y~kg~~C~~Cgk~t 240 (259)
T COG5152 196 PFLCGICKKDYESPVVT----ECGHSFCSLCAIRKYQKGDECGVCGKAT 240 (259)
T ss_pred ceeehhchhhccchhhh----hcchhHHHHHHHHHhccCCcceecchhh
Confidence 46899999999986443 5999999999888888888999997654
No 77
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.61 E-value=0.027 Score=54.74 Aligned_cols=48 Identities=21% Similarity=0.467 Sum_probs=39.4
Q ss_pred CCCcccccccccccCCcceEEecCCCccccHHHHHHHHhcCCCCcccccccc
Q 048010 108 KGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLA 159 (320)
Q Consensus 108 ~~~~~C~ICl~~~~~~~~~r~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~ 159 (320)
.++..|+||+..-. ...+.| |+|.=|..||.+-|.+.+.|=.|+..+.
T Consensus 420 sEd~lCpICyA~pi---~Avf~P-C~H~SC~~CI~qHlmN~k~CFfCktTv~ 467 (489)
T KOG4692|consen 420 SEDNLCPICYAGPI---NAVFAP-CSHRSCYGCITQHLMNCKRCFFCKTTVI 467 (489)
T ss_pred cccccCcceecccc---hhhccC-CCCchHHHHHHHHHhcCCeeeEecceee
Confidence 35678999987633 244556 9999999999999999999999988775
No 78
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.45 E-value=0.0031 Score=61.70 Aligned_cols=48 Identities=23% Similarity=0.711 Sum_probs=41.5
Q ss_pred cccccccccccCC-cceEEecCCCccccHHHHHHHHhcCCCCcccccccc
Q 048010 111 LECAVCLNEFEDD-ETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLA 159 (320)
Q Consensus 111 ~~C~ICl~~~~~~-~~~r~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~ 159 (320)
..|+||...++.. +.+..+- |||.+|.+||.+||.....||.|++.+.
T Consensus 197 ~sl~I~~~slK~~y~k~~~~~-~g~~~~~~kL~k~L~~~~kl~~~~rel~ 245 (465)
T KOG0827|consen 197 GSLSICFESLKQNYDKISAIV-CGHIYHHGKLSKWLATKRKLPSCRRELP 245 (465)
T ss_pred hhhHhhHHHHHHHHHHHHHHh-hcccchhhHHHHHHHHHHHhHHHHhhhh
Confidence 4699999999876 5555554 9999999999999999999999999885
No 79
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.10 E-value=0.024 Score=60.44 Aligned_cols=42 Identities=24% Similarity=0.747 Sum_probs=32.9
Q ss_pred cccccccccccCCcceEEecCCCccccHHHHHHHHhcCCCCccccccc
Q 048010 111 LECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNL 158 (320)
Q Consensus 111 ~~C~ICl~~~~~~~~~r~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l 158 (320)
..|..|-..++-+-.- - .|+|.||.+|+. .....||-|+.++
T Consensus 841 skCs~C~~~LdlP~Vh--F-~CgHsyHqhC~e---~~~~~CP~C~~e~ 882 (933)
T KOG2114|consen 841 SKCSACEGTLDLPFVH--F-LCGHSYHQHCLE---DKEDKCPKCLPEL 882 (933)
T ss_pred eeecccCCccccceee--e-ecccHHHHHhhc---cCcccCCccchhh
Confidence 4799999988765322 2 399999999998 4567899998844
No 80
>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=94.06 E-value=0.018 Score=53.12 Aligned_cols=44 Identities=27% Similarity=0.732 Sum_probs=32.3
Q ss_pred ccccccccccCCcceEEecCCCccccHHHHHHHHhcCCCCcccccccc
Q 048010 112 ECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLA 159 (320)
Q Consensus 112 ~C~ICl~~~~~~~~~r~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~ 159 (320)
.|..|.---. ++...++- |.|+||..|...-. ...||+|+..+-
T Consensus 5 hCn~C~~~~~-~~~f~LTa-C~HvfC~~C~k~~~--~~~C~lCkk~ir 48 (233)
T KOG4739|consen 5 HCNKCFRFPS-QDPFFLTA-CRHVFCEPCLKASS--PDVCPLCKKSIR 48 (233)
T ss_pred EeccccccCC-CCceeeee-chhhhhhhhcccCC--ccccccccceee
Confidence 4776665444 67777775 99999999976632 228999999874
No 81
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.80 E-value=0.015 Score=55.15 Aligned_cols=42 Identities=26% Similarity=0.757 Sum_probs=29.8
Q ss_pred CcccccccccccCCcceEEecCCCccc-cHHHHHHHHhcCCCCcccccccc
Q 048010 110 ALECAVCLNEFEDDETLRLIPKCDHVF-HPECIDAWLESHTTCPVCRSNLA 159 (320)
Q Consensus 110 ~~~C~ICl~~~~~~~~~r~lp~C~H~F-H~~Ci~~Wl~~~~~CP~CR~~l~ 159 (320)
...|+||++.-.+ ..+|+ |||.. |..|-.. -..||+||+.+.
T Consensus 300 ~~LC~ICmDaP~D---CvfLe-CGHmVtCt~CGkr----m~eCPICRqyi~ 342 (350)
T KOG4275|consen 300 RRLCAICMDAPRD---CVFLE-CGHMVTCTKCGKR----MNECPICRQYIV 342 (350)
T ss_pred HHHHHHHhcCCcc---eEEee-cCcEEeehhhccc----cccCchHHHHHH
Confidence 4579999998554 67887 99963 4445332 348999998764
No 82
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=93.70 E-value=0.034 Score=38.04 Aligned_cols=41 Identities=20% Similarity=0.686 Sum_probs=23.2
Q ss_pred cccccccccCCcceEEecCCCccccHHHHHHHHhcCC--CCccc
Q 048010 113 CAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHT--TCPVC 154 (320)
Q Consensus 113 C~ICl~~~~~~~~~r~lp~C~H~FH~~Ci~~Wl~~~~--~CP~C 154 (320)
|.+|.+-...+..-.-. .|+=.+|..|++.++..+. .||.|
T Consensus 1 C~~C~~iv~~G~~C~~~-~C~~r~H~~C~~~y~r~~~~~~CP~C 43 (43)
T PF08746_consen 1 CEACKEIVTQGQRCSNR-DCNVRLHDDCFKKYFRHRSNPKCPNC 43 (43)
T ss_dssp -TTT-SB-SSSEE-SS---S--EE-HHHHHHHTTT-SS-B-TTT
T ss_pred CcccchhHeeeccCCCC-ccCchHHHHHHHHHHhcCCCCCCcCC
Confidence 66777777666544221 3888999999999997655 79988
No 83
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.66 E-value=0.037 Score=52.46 Aligned_cols=47 Identities=28% Similarity=0.812 Sum_probs=38.4
Q ss_pred cccccccccccCCc---ceEEecCCCccccHHHHHHHHhc-CCCCccccccc
Q 048010 111 LECAVCLNEFEDDE---TLRLIPKCDHVFHPECIDAWLES-HTTCPVCRSNL 158 (320)
Q Consensus 111 ~~C~ICl~~~~~~~---~~r~lp~C~H~FH~~Ci~~Wl~~-~~~CP~CR~~l 158 (320)
.+|-||-++|...+ ..+.| +|||.|+..|+..-+.. ...||.||...
T Consensus 4 ~~c~~c~~~~s~~~~~~~p~~l-~c~h~~c~~c~~~l~~~~~i~cpfcR~~~ 54 (296)
T KOG4185|consen 4 PECEICNEDYSSEDGDHIPRVL-KCGHTICQNCASKLLGNSRILCPFCRETT 54 (296)
T ss_pred CceeecCccccccCcccCCccc-ccCceehHhHHHHHhcCceeeccCCCCcc
Confidence 57999999998763 34566 49999999999988754 55799999986
No 84
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.39 E-value=0.035 Score=52.77 Aligned_cols=46 Identities=24% Similarity=0.507 Sum_probs=38.7
Q ss_pred CcccccccccccCCcceEEecCCCccccHHHHHHHHhcCCCCcccccccc
Q 048010 110 ALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLA 159 (320)
Q Consensus 110 ~~~C~ICl~~~~~~~~~r~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~ 159 (320)
.+.|-||...|..+... +|+|.||..|-..-++....|.+|-+..-
T Consensus 241 Pf~c~icr~~f~~pVvt----~c~h~fc~~ca~~~~qk~~~c~vC~~~t~ 286 (313)
T KOG1813|consen 241 PFKCFICRKYFYRPVVT----KCGHYFCEVCALKPYQKGEKCYVCSQQTH 286 (313)
T ss_pred Cccccccccccccchhh----cCCceeehhhhccccccCCcceecccccc
Confidence 35699999999987544 69999999998888888889999977653
No 85
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=93.04 E-value=0.064 Score=51.94 Aligned_cols=56 Identities=16% Similarity=0.366 Sum_probs=39.6
Q ss_pred CCcccccccccccCCcceEEecCCCccccHHHHHHHHh-cCCCCccccccccCCCCC
Q 048010 109 GALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLE-SHTTCPVCRSNLASEPGE 164 (320)
Q Consensus 109 ~~~~C~ICl~~~~~~~~~r~lp~C~H~FH~~Ci~~Wl~-~~~~CP~CR~~l~~~~~~ 164 (320)
+++-|+.|++++...++-..-..||...|.-|....-+ -+..||-||+...++...
T Consensus 13 eed~cplcie~mditdknf~pc~cgy~ic~fc~~~irq~lngrcpacrr~y~denv~ 69 (480)
T COG5175 13 EEDYCPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQNLNGRCPACRRKYDDENVR 69 (480)
T ss_pred ccccCcccccccccccCCcccCCcccHHHHHHHHHHHhhccCCChHhhhhcccccee
Confidence 34559999999987775544445998888888554332 256899999988755433
No 86
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=92.88 E-value=0.053 Score=51.38 Aligned_cols=46 Identities=24% Similarity=0.657 Sum_probs=38.3
Q ss_pred CcccccccccccCCcce-EEecCCCccccHHHHHHHHhcCCCCccccc
Q 048010 110 ALECAVCLNEFEDDETL-RLIPKCDHVFHPECIDAWLESHTTCPVCRS 156 (320)
Q Consensus 110 ~~~C~ICl~~~~~~~~~-r~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~ 156 (320)
...|+||.+.+...... ..+ +|||..|..|+......+.+||+|.+
T Consensus 158 ~~ncPic~e~l~~s~~~~~~~-~CgH~~h~~cf~e~~~~~y~CP~C~~ 204 (276)
T KOG1940|consen 158 EFNCPICKEYLFLSFEDAGVL-KCGHYMHSRCFEEMICEGYTCPICSK 204 (276)
T ss_pred cCCCchhHHHhccccccCCcc-CcccchHHHHHHHHhccCCCCCcccc
Confidence 34599999998876644 444 59999999999999877799999988
No 87
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=91.91 E-value=0.25 Score=48.65 Aligned_cols=29 Identities=31% Similarity=0.982 Sum_probs=22.5
Q ss_pred CCccccHHHHHHHHhc-------------CCCCccccccccC
Q 048010 132 CDHVFHPECIDAWLES-------------HTTCPVCRSNLAS 160 (320)
Q Consensus 132 C~H~FH~~Ci~~Wl~~-------------~~~CP~CR~~l~~ 160 (320)
|.-.+|.+|+.+|+.+ +-.||+||+...-
T Consensus 311 CRPmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~FCi 352 (358)
T PF10272_consen 311 CRPMWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKFCI 352 (358)
T ss_pred ccchHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCccccee
Confidence 4466799999999954 2379999998753
No 88
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=91.09 E-value=0.12 Score=54.70 Aligned_cols=23 Identities=35% Similarity=0.985 Sum_probs=21.2
Q ss_pred CCCccccHHHHHHHHhcCCCCcc
Q 048010 131 KCDHVFHPECIDAWLESHTTCPV 153 (320)
Q Consensus 131 ~C~H~FH~~Ci~~Wl~~~~~CP~ 153 (320)
.|+|+.|.+|..+|+.....||.
T Consensus 1047 ~C~Hv~H~sc~~eWf~~gd~Cps 1069 (1081)
T KOG0309|consen 1047 TCGHVGHTSCMMEWFRTGDVCPS 1069 (1081)
T ss_pred cccccccHHHHHHHHhcCCcCCC
Confidence 39999999999999999999984
No 89
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=91.09 E-value=0.25 Score=48.13 Aligned_cols=65 Identities=20% Similarity=0.486 Sum_probs=43.5
Q ss_pred HHhhCCCcccchhhhhccCCCCcccccccccccCCcceEEecCCCccccHHHHHHH--HhcCCCCcccccccc
Q 048010 89 VIDTFPTFVYSEVKTLKVGKGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAW--LESHTTCPVCRSNLA 159 (320)
Q Consensus 89 ~i~~lp~~~~~~~~~~~~~~~~~~C~ICl~~~~~~~~~r~lp~C~H~FH~~Ci~~W--l~~~~~CP~CR~~l~ 159 (320)
.+..-|.++-+...+ ..++...|-||-+.+.- ..++| |+|..|.-|--.. |...+.||+||....
T Consensus 42 nlsaEPnlttsSadd--tDEen~~C~ICA~~~TY---s~~~P-C~H~~CH~Ca~RlRALY~~K~C~~CrTE~e 108 (493)
T COG5236 42 NLSAEPNLTTSSADD--TDEENMNCQICAGSTTY---SARYP-CGHQICHACAVRLRALYMQKGCPLCRTETE 108 (493)
T ss_pred ccccCCccccccccc--cccccceeEEecCCceE---EEecc-CCchHHHHHHHHHHHHHhccCCCccccccc
Confidence 334445544333222 22345679999988654 55677 9999999996554 467889999998653
No 90
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=90.93 E-value=0.13 Score=37.12 Aligned_cols=43 Identities=21% Similarity=0.580 Sum_probs=30.2
Q ss_pred ccccccccccCCcceEEecCCCccccHHHHHHHHhcCCCCccccccccC
Q 048010 112 ECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLAS 160 (320)
Q Consensus 112 ~C~ICl~~~~~~~~~r~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~ 160 (320)
.|-.|... +.+-.++| |+|+.+..|.+.+ +-+-||+|-+++..
T Consensus 9 ~~~~~~~~---~~~~~~~p-CgH~I~~~~f~~~--rYngCPfC~~~~~~ 51 (55)
T PF14447_consen 9 PCVFCGFV---GTKGTVLP-CGHLICDNCFPGE--RYNGCPFCGTPFEF 51 (55)
T ss_pred eEEEcccc---cccccccc-ccceeeccccChh--hccCCCCCCCcccC
Confidence 45555544 23344566 9999999997764 55679999888754
No 91
>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=90.90 E-value=0.17 Score=44.98 Aligned_cols=31 Identities=32% Similarity=0.941 Sum_probs=25.2
Q ss_pred CCCccccHHHHHHHHhc----C-------CCCccccccccCC
Q 048010 131 KCDHVFHPECIDAWLES----H-------TTCPVCRSNLASE 161 (320)
Q Consensus 131 ~C~H~FH~~Ci~~Wl~~----~-------~~CP~CR~~l~~~ 161 (320)
.||.-||.-|+..||+. + ..||.|-.++..+
T Consensus 189 qCgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~PialK 230 (234)
T KOG3268|consen 189 QCGKPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPIALK 230 (234)
T ss_pred ccCCcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCcceee
Confidence 59999999999999963 2 2699998888644
No 92
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=90.89 E-value=0.1 Score=55.36 Aligned_cols=47 Identities=26% Similarity=0.711 Sum_probs=36.3
Q ss_pred cccccccccccCCcceEEecCCCccccHHHHHHHHhc--CCCCccccccccCCC
Q 048010 111 LECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLES--HTTCPVCRSNLASEP 162 (320)
Q Consensus 111 ~~C~ICl~~~~~~~~~r~lp~C~H~FH~~Ci~~Wl~~--~~~CP~CR~~l~~~~ 162 (320)
..|.||++ .+...+.+ |+|.||..|+..-+.. ...||+||..+....
T Consensus 455 ~~c~ic~~----~~~~~it~-c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~~~~ 503 (674)
T KOG1001|consen 455 HWCHICCD----LDSFFITR-CGHDFCVECLKKSIQQSENAPCPLCRNVLKEKK 503 (674)
T ss_pred cccccccc----cccceeec-ccchHHHHHHHhccccccCCCCcHHHHHHHHHH
Confidence 68999999 34455555 9999999999888753 336999999886544
No 93
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=90.66 E-value=0.096 Score=50.20 Aligned_cols=41 Identities=37% Similarity=0.842 Sum_probs=28.3
Q ss_pred cccccccccCCcceEEecCCCccccHHHHHHHHhcCCCCccccccc
Q 048010 113 CAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNL 158 (320)
Q Consensus 113 C~ICl~~~~~~~~~r~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l 158 (320)
|--|-..+. ..-|++| |.|+||.+|-.. ...+.||.|-..|
T Consensus 93 Cd~Cd~PI~--IYGRmIP-CkHvFCl~CAr~--~~dK~Cp~C~d~V 133 (389)
T KOG2932|consen 93 CDRCDFPIA--IYGRMIP-CKHVFCLECARS--DSDKICPLCDDRV 133 (389)
T ss_pred ecccCCcce--eeecccc-cchhhhhhhhhc--CccccCcCcccHH
Confidence 555544333 2347787 999999999654 4456899997655
No 94
>PF03869 Arc: Arc-like DNA binding domain; InterPro: IPR005569 Arc repressor act by the cooperative binding of two Arc repressor dimers to a 21-base-pair operator site. Each Arc dimer uses an antiparallel beta-sheet to recognise bases in the major groove [].; GO: 0003677 DNA binding; PDB: 3QOQ_D 1MNT_B 1QTG_B 1BDV_A 1PAR_C 1BDT_C 1ARR_B 1MYL_F 1MYK_A 1NLA_B ....
Probab=89.61 E-value=0.27 Score=34.70 Aligned_cols=19 Identities=26% Similarity=0.686 Sum_probs=16.4
Q ss_pred CCcccccccCcHHHHHHHH
Q 048010 250 EDTERFTLRLPVDVRKQIM 268 (320)
Q Consensus 250 ~~~~r~tlrLpe~v~~~~~ 268 (320)
.+.++|+||||++++.+|-
T Consensus 2 r~~~~f~lRlP~~l~~~lk 20 (50)
T PF03869_consen 2 RKDPQFNLRLPEELKEKLK 20 (50)
T ss_dssp CCSEEEEEECEHHHHHHHH
T ss_pred CCCCceeeECCHHHHHHHH
Confidence 3568999999999998877
No 95
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=89.00 E-value=0.52 Score=33.89 Aligned_cols=40 Identities=25% Similarity=0.734 Sum_probs=32.6
Q ss_pred CcccccccccccCCcceEEecCCCccccHHHHHHHHhcCCCCcc
Q 048010 110 ALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPV 153 (320)
Q Consensus 110 ~~~C~ICl~~~~~~~~~r~lp~C~H~FH~~Ci~~Wl~~~~~CP~ 153 (320)
...|.+|-+.|.+++.+.+-|.|+=.+|.+|-+. ...|-+
T Consensus 5 ~~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~~----~g~C~~ 44 (54)
T PF14446_consen 5 GCKCPVCGKKFKDGDDIVVCPECGAPYHRDCWEK----AGGCIN 44 (54)
T ss_pred CccChhhCCcccCCCCEEECCCCCCcccHHHHhh----CCceEe
Confidence 3579999999998888888999999999999554 445544
No 96
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.94 E-value=0.21 Score=53.84 Aligned_cols=36 Identities=22% Similarity=0.571 Sum_probs=28.0
Q ss_pred CCCcccccccccccCCcceEEecCCCccccHHHHHHHH
Q 048010 108 KGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWL 145 (320)
Q Consensus 108 ~~~~~C~ICl~~~~~~~~~r~lp~C~H~FH~~Ci~~Wl 145 (320)
+.++.|.+|.-.+... ...+-| |||.||.+||..-.
T Consensus 815 ep~d~C~~C~~~ll~~-pF~vf~-CgH~FH~~Cl~~~v 850 (911)
T KOG2034|consen 815 EPQDSCDHCGRPLLIK-PFYVFP-CGHCFHRDCLIRHV 850 (911)
T ss_pred cCccchHHhcchhhcC-cceeee-ccchHHHHHHHHHH
Confidence 4567899999988765 334455 99999999998764
No 97
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=88.92 E-value=0.15 Score=56.83 Aligned_cols=45 Identities=27% Similarity=0.762 Sum_probs=36.9
Q ss_pred cccccccccccCCcceEEecCCCccccHHHHHHHHhcCCCCccccccc
Q 048010 111 LECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNL 158 (320)
Q Consensus 111 ~~C~ICl~~~~~~~~~r~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l 158 (320)
..|.||++.+.....+. .|+|.++..|+..|+..+..||.|....
T Consensus 1154 ~~c~ic~dil~~~~~I~---~cgh~~c~~c~~~~l~~~s~~~~~ksi~ 1198 (1394)
T KOG0298|consen 1154 FVCEICLDILRNQGGIA---GCGHEPCCRCDELWLYASSRCPICKSIK 1198 (1394)
T ss_pred cchHHHHHHHHhcCCee---eechhHhhhHHHHHHHHhccCcchhhhh
Confidence 47999999988432222 4999999999999999999999998533
No 98
>COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=88.66 E-value=0.29 Score=52.33 Aligned_cols=51 Identities=27% Similarity=0.649 Sum_probs=39.3
Q ss_pred CCcccccccccccCCcceEEecCCC---ccccHHHHHHHHhc--CCCCcccccccc
Q 048010 109 GALECAVCLNEFEDDETLRLIPKCD---HVFHPECIDAWLES--HTTCPVCRSNLA 159 (320)
Q Consensus 109 ~~~~C~ICl~~~~~~~~~r~lp~C~---H~FH~~Ci~~Wl~~--~~~CP~CR~~l~ 159 (320)
++..|.||..+=..++.+---.+|. -..|.+|+.+|+.- ...|-+|+.++.
T Consensus 11 d~~~CRICr~e~~~d~pLfhPCKC~GSIkYiH~eCL~eW~~~s~~~kCdiChy~~~ 66 (1175)
T COG5183 11 DKRSCRICRTEDIRDDPLFHPCKCSGSIKYIHRECLMEWMECSGTKKCDICHYEYK 66 (1175)
T ss_pred cchhceeecCCCCCCCcCcccccccchhHHHHHHHHHHHHhcCCCcceeeecceee
Confidence 4467999999988777764433455 56899999999963 557999999774
No 99
>KOG1609 consensus Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=88.43 E-value=0.25 Score=46.68 Aligned_cols=50 Identities=28% Similarity=0.784 Sum_probs=36.9
Q ss_pred CcccccccccccCCcc-eEEecCCC-----ccccHHHHHHHHh--cCCCCccccccccC
Q 048010 110 ALECAVCLNEFEDDET-LRLIPKCD-----HVFHPECIDAWLE--SHTTCPVCRSNLAS 160 (320)
Q Consensus 110 ~~~C~ICl~~~~~~~~-~r~lp~C~-----H~FH~~Ci~~Wl~--~~~~CP~CR~~l~~ 160 (320)
+..|-||.++...... ....| |. +..|..|++.|+. ....|.+|......
T Consensus 78 ~~~cRIc~~~~~~~~~~~l~~p-C~C~g~l~~vH~~cl~~W~~~~~~~~CeiC~~~~~~ 135 (323)
T KOG1609|consen 78 GPICRICHEEDEESNGLLLISP-CSCKGSLAYVHRSCLEKWFSIKGNITCEICKSFFIN 135 (323)
T ss_pred CCcEEEEecccccccccccccC-ccccCcHHHHHHHHHHhhhccccCeeeeccccccee
Confidence 4679999998765432 23344 65 7789999999996 56689999886643
No 100
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=87.33 E-value=0.25 Score=34.56 Aligned_cols=43 Identities=26% Similarity=0.700 Sum_probs=25.2
Q ss_pred ccccccccccCCcceEEecCCC-ccccHHHHHHHHhcCCCCccccccccC
Q 048010 112 ECAVCLNEFEDDETLRLIPKCD-HVFHPECIDAWLESHTTCPVCRSNLAS 160 (320)
Q Consensus 112 ~C~ICl~~~~~~~~~r~lp~C~-H~FH~~Ci~~Wl~~~~~CP~CR~~l~~ 160 (320)
.|.-|+-+.+ ..+ +|+ |..+..|+...|.....||+|..++..
T Consensus 4 nCKsCWf~~k--~Li----~C~dHYLCl~CLt~ml~~s~~C~iC~~~LPt 47 (50)
T PF03854_consen 4 NCKSCWFANK--GLI----KCSDHYLCLNCLTLMLSRSDRCPICGKPLPT 47 (50)
T ss_dssp ---SS-S--S--SEE----E-SS-EEEHHHHHHT-SSSSEETTTTEE---
T ss_pred cChhhhhcCC--Cee----eecchhHHHHHHHHHhccccCCCcccCcCcc
Confidence 4666664432 223 366 999999999999999999999988753
No 101
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=86.11 E-value=0.39 Score=49.76 Aligned_cols=50 Identities=28% Similarity=0.848 Sum_probs=40.3
Q ss_pred ccCCCCcccccccccccCCcceEEecCCCccccHHHHHHHHhcCCCCccccccccCCC
Q 048010 105 KVGKGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLASEP 162 (320)
Q Consensus 105 ~~~~~~~~C~ICl~~~~~~~~~r~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~~~ 162 (320)
...+....|.||+.++ ..+..+ |. |..|+.+|+..+..||+|+..+..+.
T Consensus 474 ~l~~~~~~~~~~~~~~----~~~~~~-~~---~~~~l~~~~~~~~~~pl~~~~~~~~~ 523 (543)
T KOG0802|consen 474 QLREPNDVCAICYQEM----SARITP-CS---HALCLRKWLYVQEVCPLCHTYMKEDD 523 (543)
T ss_pred hhhcccCcchHHHHHH----Hhcccc-cc---chhHHHhhhhhccccCCCchhhhccc
Confidence 3445567899999998 455555 88 89999999999999999999876544
No 102
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=85.95 E-value=0.64 Score=40.57 Aligned_cols=37 Identities=22% Similarity=0.591 Sum_probs=22.2
Q ss_pred CcccccccccccCCcceEEec---C-----CC-ccccHHHHHHHHh
Q 048010 110 ALECAVCLNEFEDDETLRLIP---K-----CD-HVFHPECIDAWLE 146 (320)
Q Consensus 110 ~~~C~ICl~~~~~~~~~r~lp---~-----C~-H~FH~~Ci~~Wl~ 146 (320)
+..|+|||+--.....+.-.. . |+ -.-|..|++++-+
T Consensus 2 d~~CpICme~PHNAVLLlCSS~~kgcRpymc~Ts~rhSNCLdqfkk 47 (162)
T PF07800_consen 2 DVTCPICMEHPHNAVLLLCSSHEKGCRPYMCDTSYRHSNCLDQFKK 47 (162)
T ss_pred CccCceeccCCCceEEEEeccccCCccccccCCccchhHHHHHHHH
Confidence 357999999865532221100 0 33 3458999999854
No 103
>KOG3053 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.43 E-value=0.37 Score=45.15 Aligned_cols=51 Identities=22% Similarity=0.662 Sum_probs=34.8
Q ss_pred CCcccccccccccCCcceEEecCCC-----ccccHHHHHHHHhc--------CCCCcccccccc
Q 048010 109 GALECAVCLNEFEDDETLRLIPKCD-----HVFHPECIDAWLES--------HTTCPVCRSNLA 159 (320)
Q Consensus 109 ~~~~C~ICl~~~~~~~~~r~lp~C~-----H~FH~~Ci~~Wl~~--------~~~CP~CR~~l~ 159 (320)
.+.-|-||+..=+++-.-...-+|. |-.|..|+..|+.. ..+||-|+.+..
T Consensus 19 ~eR~CWiCF~TdeDn~~a~WV~PCrCRGt~KWVHqsCL~rWiDEK~~~n~~q~V~C~QCqTEYi 82 (293)
T KOG3053|consen 19 LERCCWICFATDEDNRLAAWVHPCRCRGTTKWVHQSCLSRWIDEKQRGNPLQTVSCPQCQTEYI 82 (293)
T ss_pred cceeEEEEeccCcccchhhhcccccccCccHHHHHHHHHHHHhHHhcCCCCceeechhhcchhe
Confidence 3456999998855543221222254 99999999999942 237999998764
No 104
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=84.88 E-value=3 Score=41.37 Aligned_cols=45 Identities=20% Similarity=0.545 Sum_probs=38.0
Q ss_pred CCcccccccccccCCcceEEecCCCccccHHHHHHHHhcC---CCCccc
Q 048010 109 GALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESH---TTCPVC 154 (320)
Q Consensus 109 ~~~~C~ICl~~~~~~~~~r~lp~C~H~FH~~Ci~~Wl~~~---~~CP~C 154 (320)
....|+|=.+.=.+.+....|. |||+...+-|....++. ..||-|
T Consensus 333 SvF~CPVlKeqtsdeNPPm~L~-CGHVISkdAlnrLS~ng~~sfKCPYC 380 (394)
T KOG2817|consen 333 SVFICPVLKEQTSDENPPMMLI-CGHVISKDALNRLSKNGSQSFKCPYC 380 (394)
T ss_pred ceeecccchhhccCCCCCeeee-ccceecHHHHHHHhhCCCeeeeCCCC
Confidence 4578999888888888888887 99999999999987654 479999
No 105
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=84.55 E-value=0.38 Score=47.82 Aligned_cols=39 Identities=26% Similarity=0.663 Sum_probs=28.8
Q ss_pred CCcccccccccccCC-cceEEecCCCccccHHHHHHHHhcC
Q 048010 109 GALECAVCLNEFEDD-ETLRLIPKCDHVFHPECIDAWLESH 148 (320)
Q Consensus 109 ~~~~C~ICl~~~~~~-~~~r~lp~C~H~FH~~Ci~~Wl~~~ 148 (320)
...+|.||+.+.... +... ..+|+|.||.+|+...++.+
T Consensus 145 ~~~~C~iC~~e~~~~~~~f~-~~~C~H~fC~~C~k~~iev~ 184 (384)
T KOG1812|consen 145 PKEECGICFVEDPEAEDMFS-VLKCGHRFCKDCVKQHIEVK 184 (384)
T ss_pred ccccCccCccccccHhhhHH-HhcccchhhhHHhHHHhhhh
Confidence 356899999555444 4444 44699999999999998643
No 106
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=83.93 E-value=0.75 Score=44.27 Aligned_cols=45 Identities=24% Similarity=0.582 Sum_probs=33.6
Q ss_pred CCcccccccccccCCcceEEecCCCccccHHHHHHHHhcCCCCcccccccc
Q 048010 109 GALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLA 159 (320)
Q Consensus 109 ~~~~C~ICl~~~~~~~~~r~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~ 159 (320)
+-.+|+||.+.+..+.. .-. =||+-|..|-. +....||.||-++.
T Consensus 47 ~lleCPvC~~~l~~Pi~--QC~-nGHlaCssC~~---~~~~~CP~Cr~~~g 91 (299)
T KOG3002|consen 47 DLLDCPVCFNPLSPPIF--QCD-NGHLACSSCRT---KVSNKCPTCRLPIG 91 (299)
T ss_pred hhccCchhhccCcccce--ecC-CCcEehhhhhh---hhcccCCccccccc
Confidence 34689999999988643 211 36888888864 45778999999886
No 107
>PF07213 DAP10: DAP10 membrane protein; InterPro: IPR009861 This family consists of several mammalian DAP10 membrane proteins. In activated mouse natural killer (NK) cells, the NKG2D receptor associates with two intracellular adaptors, DAP10 and DAP12, which trigger phosphatidyl inositol 3 kinase (PI3K) and Syk family protein tyrosine kinases, respectively. It has been suggested that the DAP10-PI3K pathway is sufficient to initiate NKG2D-mediated killing of target cells [].
Probab=83.48 E-value=4 Score=31.59 Aligned_cols=51 Identities=22% Similarity=0.215 Sum_probs=26.2
Q ss_pred chhhhhhhhhhccCCCCCCCCCCCC--CCCCcchHHHHHHHHHHHHHHHHHHHHHHHH
Q 048010 2 LLVAHALPLSLAQRSPEPPGSVDPY--SNMKFSPSLAIIIVVLISALFFMGFFSIYIR 57 (320)
Q Consensus 2 l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~iiiiilv~~~~ll~~~~i~~r 57 (320)
+||+++++.+++|..+ . ..+ ...+......|++.-++..+++.+..+.+.|
T Consensus 7 lLflLLL~VaAaq~~~---g--scs~C~~ls~g~LaGiV~~D~vlTLLIv~~vy~car 59 (79)
T PF07213_consen 7 LLFLLLLPVAAAQTQP---G--SCSGCYPLSPGLLAGIVAADAVLTLLIVLVVYYCAR 59 (79)
T ss_pred cHHHHHHHHhhhcCCC---C--CCCCccccCHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 4555666665554421 1 233 2334445555666666666666655544444
No 108
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=81.44 E-value=1.2 Score=42.45 Aligned_cols=48 Identities=23% Similarity=0.585 Sum_probs=34.4
Q ss_pred cccccccccc-CCcceEEecCCCccccHHHHHHHHh-cCCCCcccccccc
Q 048010 112 ECAVCLNEFE-DDETLRLIPKCDHVFHPECIDAWLE-SHTTCPVCRSNLA 159 (320)
Q Consensus 112 ~C~ICl~~~~-~~~~~r~lp~C~H~FH~~Ci~~Wl~-~~~~CP~CR~~l~ 159 (320)
.|++|..+.- .++...+...|+|-.|..|++..+. ....||.|-..+.
T Consensus 2 ~Cp~CKt~~Y~np~lk~~in~C~H~lCEsCvd~iF~~g~~~CpeC~~iLR 51 (300)
T KOG3800|consen 2 ACPKCKTDRYLNPDLKLMINECGHRLCESCVDRIFSLGPAQCPECMVILR 51 (300)
T ss_pred CCcccccceecCccceeeeccccchHHHHHHHHHHhcCCCCCCcccchhh
Confidence 4899987644 3333223334999999999999985 5668999977653
No 109
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=80.58 E-value=2.7 Score=35.25 Aligned_cols=33 Identities=21% Similarity=0.214 Sum_probs=20.4
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHhccCCC
Q 048010 31 FSPSLAIIIVVLISALFFMGFFSIYIRHCSDSS 63 (320)
Q Consensus 31 ~~~~~~iiiiilv~~~~ll~~~~i~~r~c~~~~ 63 (320)
-..+.+|+++++..++++++++++++|+.+++.
T Consensus 63 ~~~i~~Ii~gv~aGvIg~Illi~y~irR~~Kk~ 95 (122)
T PF01102_consen 63 EPAIIGIIFGVMAGVIGIILLISYCIRRLRKKS 95 (122)
T ss_dssp -TCHHHHHHHHHHHHHHHHHHHHHHHHHHS---
T ss_pred ccceeehhHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 345677777777777777777766666655443
No 110
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=79.55 E-value=1.5 Score=46.64 Aligned_cols=40 Identities=20% Similarity=0.435 Sum_probs=31.3
Q ss_pred ccccccccccCCcceEEecCCCccccHHHHHHHHhcCCCCcc
Q 048010 112 ECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPV 153 (320)
Q Consensus 112 ~C~ICl~~~~~~~~~r~lp~C~H~FH~~Ci~~Wl~~~~~CP~ 153 (320)
.|.+|...+.. .....+.|+|.-|.+|+..|+..+..||.
T Consensus 781 ~CtVC~~vi~G--~~~~c~~C~H~gH~sh~~sw~~~~s~ca~ 820 (839)
T KOG0269|consen 781 KCTVCDLVIRG--VDVWCQVCGHGGHDSHLKSWFFKASPCAK 820 (839)
T ss_pred Cceeecceeee--eEeecccccccccHHHHHHHHhcCCCCcc
Confidence 58888766553 23455579999999999999998888876
No 111
>KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=78.98 E-value=1 Score=42.99 Aligned_cols=30 Identities=23% Similarity=0.732 Sum_probs=23.9
Q ss_pred CCccccHHHHHHHHhc-------------CCCCccccccccCC
Q 048010 132 CDHVFHPECIDAWLES-------------HTTCPVCRSNLASE 161 (320)
Q Consensus 132 C~H~FH~~Ci~~Wl~~-------------~~~CP~CR~~l~~~ 161 (320)
|.-.+|.+|+.+|+.. +-+||.||++..-.
T Consensus 325 crp~wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~fci~ 367 (381)
T KOG3899|consen 325 CRPLWCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNFCIR 367 (381)
T ss_pred cccHHHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhceEEe
Confidence 6688999999999842 34799999988643
No 112
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=78.96 E-value=1.4 Score=37.47 Aligned_cols=52 Identities=21% Similarity=0.519 Sum_probs=36.4
Q ss_pred CCcccccccccccCCcceEEecCCCccccHHHHHHHHh---cCCCCccccccccC
Q 048010 109 GALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLE---SHTTCPVCRSNLAS 160 (320)
Q Consensus 109 ~~~~C~ICl~~~~~~~~~r~lp~C~H~FH~~Ci~~Wl~---~~~~CP~CR~~l~~ 160 (320)
.-.+|.||.|.-.+..-++--..||-..|.-|-...++ .+..||+|+...-.
T Consensus 79 ~lYeCnIC~etS~ee~FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFKs 133 (140)
T PF05290_consen 79 KLYECNICKETSAEERFLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSFKS 133 (140)
T ss_pred CceeccCcccccchhhcCCcccccchHHHHHHHHHHHHHcccCCCCCcccccccc
Confidence 45789999998765443322224998888888655443 47799999998754
No 113
>KOG3113 consensus Uncharacterized conserved protein [Function unknown]
Probab=78.67 E-value=2.1 Score=40.21 Aligned_cols=52 Identities=17% Similarity=0.375 Sum_probs=41.9
Q ss_pred CCcccccccccccCCcceEEecCCCccccHHHHHHHHhcCCCCccccccccCCC
Q 048010 109 GALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLASEP 162 (320)
Q Consensus 109 ~~~~C~ICl~~~~~~~~~r~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~~~ 162 (320)
....|+|---+|........+..|||+|-..-+.+. ...+|++|-+.+...+
T Consensus 110 a~fiCPvtgleMng~~~F~~l~~CGcV~SerAlKei--kas~C~~C~a~y~~~d 161 (293)
T KOG3113|consen 110 ARFICPVTGLEMNGKYRFCALRCCGCVFSERALKEI--KASVCHVCGAAYQEDD 161 (293)
T ss_pred ceeecccccceecceEEEEEEeccceeccHHHHHHh--hhccccccCCcccccC
Confidence 456799999999888777777789999998888774 3678999999886544
No 114
>PHA01513 mnt Mnt
Probab=77.31 E-value=2.1 Score=33.46 Aligned_cols=43 Identities=30% Similarity=0.532 Sum_probs=27.0
Q ss_pred CcccccccCcHHHHHHHH--hhhcccccce-eee-----cCCCccCCCcCC
Q 048010 251 DTERFTLRLPVDVRKQIM--NRELNRSNSL-VVL-----PREASSRRGYRP 293 (320)
Q Consensus 251 ~~~r~tlrLpe~v~~~~~--~~~l~r~~s~-~~~-----~~~~s~~~g~~~ 293 (320)
+..+|+||||++++.++- .....|+.-. ++. -+..+.+.||+.
T Consensus 4 ~~~qf~LRLP~eLk~rL~~aA~~nGRSmNaeIv~~Le~al~~~~~~~g~~~ 54 (82)
T PHA01513 4 DDPQFNLRLPYELKEKLKQRAKANGRSLNAELVQIVQDALSKPSPVTGYRD 54 (82)
T ss_pred CCcceeeeCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCcchhhHH
Confidence 457999999999998887 2344443322 111 134567888863
No 115
>smart00132 LIM Zinc-binding domain present in Lin-11, Isl-1, Mec-3. Zinc-binding domain family. Some LIM domains bind protein partners via tyrosine-containing motifs. LIM domains are found in many key regulators of developmental pathways.
Probab=77.30 E-value=2.2 Score=26.92 Aligned_cols=37 Identities=32% Similarity=0.682 Sum_probs=26.0
Q ss_pred cccccccccCCcceEEecCCCccccHHHHHHHHhcCCCCcccccccc
Q 048010 113 CAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLA 159 (320)
Q Consensus 113 C~ICl~~~~~~~~~r~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~ 159 (320)
|..|.+.+...+..... =+..||.+| ..|..|...|.
T Consensus 2 C~~C~~~i~~~~~~~~~--~~~~~H~~C--------f~C~~C~~~L~ 38 (39)
T smart00132 2 CAGCGKPIRGGELVLRA--LGKVWHPEC--------FKCSKCGKPLG 38 (39)
T ss_pred ccccCCcccCCcEEEEe--CCccccccC--------CCCcccCCcCc
Confidence 88898888876333222 478899888 56888877653
No 116
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=76.67 E-value=1.2 Score=41.58 Aligned_cols=47 Identities=26% Similarity=0.605 Sum_probs=35.7
Q ss_pred CcccccccccccC--CcceEEecCCCccccHHHHHHHHhc-CCCCc--cccc
Q 048010 110 ALECAVCLNEFED--DETLRLIPKCDHVFHPECIDAWLES-HTTCP--VCRS 156 (320)
Q Consensus 110 ~~~C~ICl~~~~~--~~~~r~lp~C~H~FH~~Ci~~Wl~~-~~~CP--~CR~ 156 (320)
+..|+||..+.-- +-++.+-|.|-|..|..|++.-+.. ...|| -|-+
T Consensus 10 d~~CPvCksDrYLnPdik~linPECyHrmCESCvdRIFs~GpAqCP~~gC~k 61 (314)
T COG5220 10 DRRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIFSRGPAQCPYKGCGK 61 (314)
T ss_pred cccCCccccccccCCCeEEEECHHHHHHHHHHHHHHHhcCCCCCCCCccHHH
Confidence 3579999988543 3345566679999999999999965 56899 7855
No 117
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=75.50 E-value=0.8 Score=48.46 Aligned_cols=46 Identities=37% Similarity=0.949 Sum_probs=36.2
Q ss_pred CcccccccccccCCcceEEecCCCccccHHHHHHHHhc---CCCCcccccccc
Q 048010 110 ALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLES---HTTCPVCRSNLA 159 (320)
Q Consensus 110 ~~~C~ICl~~~~~~~~~r~lp~C~H~FH~~Ci~~Wl~~---~~~CP~CR~~l~ 159 (320)
..+|.||+..+.....+ +|.|.|+..|+..-|.. ...||+|+..+.
T Consensus 21 ~lEc~ic~~~~~~p~~~----kc~~~~l~~~~n~~f~~~~~~~~~~lc~~~~e 69 (684)
T KOG4362|consen 21 ILECPICLEHVKEPSLL----KCDHIFLKFCLNKLFESKKGPKQCALCKSDIE 69 (684)
T ss_pred hccCCceeEEeeccchh----hhhHHHHhhhhhceeeccCccccchhhhhhhh
Confidence 46899999999887322 79999999998877644 447999997664
No 118
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=74.46 E-value=1.6 Score=46.71 Aligned_cols=50 Identities=18% Similarity=0.317 Sum_probs=34.9
Q ss_pred CCcccccccccccCCc---ceEEecCCCccccHHHHHHHHhc------CCCCccccccc
Q 048010 109 GALECAVCLNEFEDDE---TLRLIPKCDHVFHPECIDAWLES------HTTCPVCRSNL 158 (320)
Q Consensus 109 ~~~~C~ICl~~~~~~~---~~r~lp~C~H~FH~~Ci~~Wl~~------~~~CP~CR~~l 158 (320)
....|.||.-++.+++ -...+..|+|-||..||..|+.. +-.|++|..-|
T Consensus 95 ~s~Ss~~C~~E~S~~~ds~~i~P~~~~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci 153 (1134)
T KOG0825|consen 95 ESDTSPVCEKEHSPDVDSSNICPVQTHVENQCPNCLKSCNDQLEESEKHTAHYFCEECV 153 (1134)
T ss_pred cccccchhheecCCcccccCcCchhhhhhhhhhHHHHHHHHHhhccccccccccHHHHh
Confidence 3456888888887633 22223359999999999999843 33678887755
No 119
>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=73.96 E-value=7.4 Score=25.97 Aligned_cols=23 Identities=22% Similarity=0.368 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 048010 35 LAIIIVVLISALFFMGFFSIYIR 57 (320)
Q Consensus 35 ~~iiiiilv~~~~ll~~~~i~~r 57 (320)
++|+.++++.+.+++..+++|..
T Consensus 6 IaIIv~V~vg~~iiii~~~~YaC 28 (38)
T PF02439_consen 6 IAIIVAVVVGMAIIIICMFYYAC 28 (38)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555544444444444433
No 120
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=73.51 E-value=2.5 Score=38.25 Aligned_cols=42 Identities=33% Similarity=0.865 Sum_probs=29.9
Q ss_pred CCccccccccc-----ccCCcceEEecCCCccccHHHHHHHHhcCCCCccccc
Q 048010 109 GALECAVCLNE-----FEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRS 156 (320)
Q Consensus 109 ~~~~C~ICl~~-----~~~~~~~r~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~ 156 (320)
.+..|.||-++ |+. +.+..-++|+-+||..|... ..||-|-+
T Consensus 151 kGfiCe~C~~~~~IfPF~~-~~~~~C~~C~~v~H~~C~~~-----~~CpkC~R 197 (202)
T PF13901_consen 151 KGFICEICNSDDIIFPFQI-DTTVRCPKCKSVFHKSCFRK-----KSCPKCAR 197 (202)
T ss_pred CCCCCccCCCCCCCCCCCC-CCeeeCCcCccccchhhcCC-----CCCCCcHh
Confidence 34679999753 223 34556667999999999762 67999943
No 121
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=70.50 E-value=1.6 Score=45.86 Aligned_cols=43 Identities=26% Similarity=0.650 Sum_probs=31.6
Q ss_pred cccccccccccCCcceEEecCCCccccHHHHHHHHhcCCCCccccc
Q 048010 111 LECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRS 156 (320)
Q Consensus 111 ~~C~ICl~~~~~~~~~r~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~ 156 (320)
..|.||+..|......-..+.|||..|..|+..-. +.+|| |..
T Consensus 12 l~c~ic~n~f~~~~~~Pvsl~cghtic~~c~~~ly--n~scp-~~~ 54 (861)
T KOG3161|consen 12 LLCDICLNLFVVQRLEPVSLQCGHTICGHCVQLLY--NASCP-TKR 54 (861)
T ss_pred hhchHHHHHHHHHhcCcccccccchHHHHHHHhHh--hccCC-CCc
Confidence 46999999987655433333699999999998753 45788 644
No 122
>KOG3005 consensus GIY-YIG type nuclease [General function prediction only]
Probab=68.06 E-value=3.5 Score=38.96 Aligned_cols=49 Identities=31% Similarity=0.658 Sum_probs=35.4
Q ss_pred CcccccccccccCCcceEE---ecCCCccccHHHHHHHHhc---------CCCCccccccc
Q 048010 110 ALECAVCLNEFEDDETLRL---IPKCDHVFHPECIDAWLES---------HTTCPVCRSNL 158 (320)
Q Consensus 110 ~~~C~ICl~~~~~~~~~r~---lp~C~H~FH~~Ci~~Wl~~---------~~~CP~CR~~l 158 (320)
..+|-+|.+++...+..+. -+.|.-++|..|+..-+.. ...||.|++.+
T Consensus 182 ~~~celc~~ei~e~~~~~a~c~~~~c~~~~h~~CLa~~~~~~e~g~~~p~eg~cp~C~~~~ 242 (276)
T KOG3005|consen 182 NVECELCEKEILETDWSRATCPNPDCDSLNHLTCLAEELLEVEPGQLIPLEGMCPKCEKFL 242 (276)
T ss_pred chhhHHHHHHhccccceeccCCCCCCCchhhhhhhhHHHhccCCCceeccCCCCCchhcee
Confidence 3589999999954444332 2358899999999995421 34799998854
No 123
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=67.47 E-value=13 Score=36.19 Aligned_cols=95 Identities=20% Similarity=0.255 Sum_probs=57.3
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCcccccCCCCHHHHhhCCCcccchhhhhccCCCCc
Q 048010 32 SPSLAIIIVVLISALFFMGFFSIYIRHCSDSSNSVIRPAGAGGNRSRRGAARGLDREVIDTFPTFVYSEVKTLKVGKGAL 111 (320)
Q Consensus 32 ~~~~~iiiiilv~~~~ll~~~~i~~r~c~~~~~~~~~~~~~~~~~~~r~~~~gl~~~~i~~lp~~~~~~~~~~~~~~~~~ 111 (320)
+|.-.++...+++..+++-.-+|....--.|.... .+.- --.+|... -.....
T Consensus 285 spL~~~v~tG~iaf~~l~k~~si~~~kHvdWT~~~-----------------eLP~--eIklp~~~--------hfHs~F 337 (396)
T COG5109 285 SPLRELVETGTIAFLQLSKSGSILFDKHVDWTDDS-----------------ELPM--EIKLPKGR--------HFHSLF 337 (396)
T ss_pred ChHHHHHHhhhHHHHHHHHhhhHHHhhccCccCCC-----------------CCce--EEecCCcc--------ccccee
Confidence 34555666666676777777777666544444110 0000 00223221 112346
Q ss_pred ccccccccccCCcceEEecCCCccccHHHHHHHHhc---CCCCccc
Q 048010 112 ECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLES---HTTCPVC 154 (320)
Q Consensus 112 ~C~ICl~~~~~~~~~r~lp~C~H~FH~~Ci~~Wl~~---~~~CP~C 154 (320)
.|++--+.-.+.+...++. |||+.-.+-++..-++ ...||.|
T Consensus 338 iCPVlKe~~t~ENpP~ml~-CgHVIskeal~~LS~nG~~~FKCPYC 382 (396)
T COG5109 338 ICPVLKELCTDENPPVMLE-CGHVISKEALSVLSQNGVLSFKCPYC 382 (396)
T ss_pred eccccHhhhcccCCCeeee-ccceeeHHHHHHHhhcCcEEeeCCCC
Confidence 7998777766667677776 9999999999886554 3479999
No 124
>KOG1829 consensus Uncharacterized conserved protein, contains C1, PH and RUN domains [Signal transduction mechanisms]
Probab=67.33 E-value=2 Score=44.81 Aligned_cols=44 Identities=32% Similarity=0.765 Sum_probs=26.8
Q ss_pred CCcccccccc-----cccCCcceEEecCCCccccHHHHHHHHhcCCCCccccc
Q 048010 109 GALECAVCLN-----EFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRS 156 (320)
Q Consensus 109 ~~~~C~ICl~-----~~~~~~~~r~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~ 156 (320)
....|.+|-. .|+.....+.. .|+++||..|+.. ....||-|-+
T Consensus 510 ~gfiCe~Cq~~~iiyPF~~~~~~rC~-~C~avfH~~C~~r---~s~~CPrC~R 558 (580)
T KOG1829|consen 510 KGFICELCQHNDIIYPFETRNTRRCS-TCLAVFHKKCLRR---KSPCCPRCER 558 (580)
T ss_pred CeeeeeeccCCCcccccccccceeHH-HHHHHHHHHHHhc---cCCCCCchHH
Confidence 3467888822 23323333444 4999999999554 2334999933
No 125
>KOG4718 consensus Non-SMC (structural maintenance of chromosomes) element 1 protein (NSE1) [Chromatin structure and dynamics]
Probab=65.86 E-value=3.2 Score=37.95 Aligned_cols=43 Identities=23% Similarity=0.624 Sum_probs=34.7
Q ss_pred cccccccccccCCcceEEecCCCccccHHHHHHHHhcCCCCccccc
Q 048010 111 LECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRS 156 (320)
Q Consensus 111 ~~C~ICl~~~~~~~~~r~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~ 156 (320)
..|.+|.+-.-.+.. .- .|+-.+|..|+..++.+...||.|-.
T Consensus 182 k~Cn~Ch~LvIqg~r--Cg-~c~i~~h~~c~qty~q~~~~cphc~d 224 (235)
T KOG4718|consen 182 KNCNLCHCLVIQGIR--CG-SCNIQYHRGCIQTYLQRRDICPHCGD 224 (235)
T ss_pred HHHhHhHHHhheeec--cC-cccchhhhHHHHHHhcccCcCCchhc
Confidence 479999987665532 22 48899999999999999999999943
No 126
>PHA02849 putative transmembrane protein; Provisional
Probab=64.89 E-value=13 Score=28.64 Aligned_cols=35 Identities=20% Similarity=0.556 Sum_probs=22.5
Q ss_pred CCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 048010 26 YSNMKFSPSLAIIIVVLISALFFMGFFSIYIRHCS 60 (320)
Q Consensus 26 ~~~~~~~~~~~iiiiilv~~~~ll~~~~i~~r~c~ 60 (320)
..+..|..-++.++.+++.++.++.|+.+|+-+|.
T Consensus 7 ~~d~~f~~g~v~vi~v~v~vI~i~~flLlyLvkws 41 (82)
T PHA02849 7 LNDIEFDAGAVTVILVFVLVISFLAFMLLYLIKWS 41 (82)
T ss_pred ccccccccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666666666666667777777777766654
No 127
>PF15102 TMEM154: TMEM154 protein family
Probab=64.45 E-value=3.1 Score=35.86 Aligned_cols=9 Identities=44% Similarity=1.029 Sum_probs=5.6
Q ss_pred HHHHHHHhc
Q 048010 139 ECIDAWLES 147 (320)
Q Consensus 139 ~Ci~~Wl~~ 147 (320)
.=||+|+.+
T Consensus 128 eeldkwm~s 136 (146)
T PF15102_consen 128 EELDKWMNS 136 (146)
T ss_pred HHHHhHHHh
Confidence 347778743
No 128
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=63.16 E-value=7.1 Score=37.86 Aligned_cols=52 Identities=29% Similarity=0.646 Sum_probs=35.2
Q ss_pred CCCccccccccccc---------------CC-cceEEecCCCccccHHHHHHHHhc---------CCCCccccccccC
Q 048010 108 KGALECAVCLNEFE---------------DD-ETLRLIPKCDHVFHPECIDAWLES---------HTTCPVCRSNLAS 160 (320)
Q Consensus 108 ~~~~~C~ICl~~~~---------------~~-~~~r~lp~C~H~FH~~Ci~~Wl~~---------~~~CP~CR~~l~~ 160 (320)
....+|++|+..=. .+ -.....| |||+--..-..-|-.. +..||.|-..|..
T Consensus 339 ~~~r~CPmC~~~gp~V~L~lG~E~~f~vD~G~pthaF~P-CGHv~sekt~~YWs~iplPhGT~~f~a~CPFC~~~L~g 415 (429)
T KOG3842|consen 339 QRERECPMCRVVGPYVPLWLGCEAGFYVDAGPPTHAFNP-CGHVCSEKTVKYWSQIPLPHGTHAFHAACPFCATQLAG 415 (429)
T ss_pred cccCcCCeeeeecceeeeeccccceeEecCCCcccccCC-cccccchhhhhHhhcCcCCCccccccccCcchhhhhcc
Confidence 34678999997632 01 1224555 9999888888888642 4579999887753
No 129
>PF00412 LIM: LIM domain; InterPro: IPR001781 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents LIM-type zinc finger (Znf) domains. LIM domains coordinate one or more zinc atoms, and are named after the three proteins (LIN-11, Isl1 and MEC-3) in which they were first found. They consist of two zinc-binding motifs that resemble GATA-like Znf's, however the residues holding the zinc atom(s) are variable, involving Cys, His, Asp or Glu residues. LIM domains are involved in proteins with differing functions, including gene expression, and cytoskeleton organisation and development [, ]. Protein containing LIM Znf domains include: Caenorhabditis elegans mec-3; a protein required for the differentiation of the set of six touch receptor neurons in this nematode. C. elegans. lin-11; a protein required for the asymmetric division of vulval blast cells. Vertebrate insulin gene enhancer binding protein isl-1. Isl-1 binds to one of the two cis-acting protein-binding domains of the insulin gene. Vertebrate homeobox proteins lim-1, lim-2 (lim-5) and lim3. Vertebrate lmx-1, which acts as a transcriptional activator by binding to the FLAT element; a beta-cell-specific transcriptional enhancer found in the insulin gene. Mammalian LH-2, a transcriptional regulatory protein involved in the control of cell differentiation in developing lymphoid and neural cell types. Drosophila melanogaster (Fruit fly) protein apterous, required for the normal development of the wing and halter imaginal discs. Vertebrate protein kinases LIMK-1 and LIMK-2. Mammalian rhombotins. Rhombotin 1 (RBTN1 or TTG-1) and rhombotin-2 (RBTN2 or TTG-2) are proteins of about 160 amino acids whose genes are disrupted by chromosomal translocations in T-cell leukemia. Mammalian and avian cysteine-rich protein (CRP), a 192 amino-acid protein of unknown function. Seems to interact with zyxin. Mammalian cysteine-rich intestinal protein (CRIP), a small protein which seems to have a role in zinc absorption and may function as an intracellular zinc transport protein. Vertebrate paxillin, a cytoskeletal focal adhesion protein. Mus musculus (Mouse) testin which should not be confused with rat testin which is a thiol protease homologue (see IPR000169 from INTERPRO). Helianthus annuus (Common sunflower) pollen specific protein SF3. Chicken zyxin. Zyxin is a low-abundance adhesion plaque protein which has been shown to interact with CRP. Yeast protein LRG1 which is involved in sporulation []. Saccharomyces cerevisiae (Baker's yeast) rho-type GTPase activating protein RGA1/DBM1. C. elegans homeobox protein ceh-14. C. elegans homeobox protein unc-97. S. cerevisiae hypothetical protein YKR090w. C. elegans hypothetical proteins C28H8.6. These proteins generally contain two tandem copies of the LIM domain in their N-terminal section. Zyxin and paxillin are exceptions in that they contain respectively three and four LIM domains at their C-terminal extremity. In apterous, isl-1, LH-2, lin-11, lim-1 to lim-3, lmx-1 and ceh-14 and mec-3 there is a homeobox domain some 50 to 95 amino acids after the LIM domains. LIM domains contain seven conserved cysteine residues and a histidine. The arrangement followed by these conserved residues is: C-x(2)-C-x(16,23)-H-x(2)-[CH]-x(2)-C-x(2)-C-x(16,21)-C-x(2,3)-[CHD] LIM domains bind two zinc ions []. LIM does not bind DNA, rather it seems to act as an interface for protein-protein interaction. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2CO8_A 2EGQ_A 2CUR_A 3IXE_B 1CTL_A 1B8T_A 1X62_A 2DFY_C 1IML_A 2CUQ_A ....
Probab=62.52 E-value=6.8 Score=27.29 Aligned_cols=39 Identities=28% Similarity=0.604 Sum_probs=27.1
Q ss_pred cccccccccCCcceEEecCCCccccHHHHHHHHhcCCCCccccccccCC
Q 048010 113 CAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLASE 161 (320)
Q Consensus 113 C~ICl~~~~~~~~~r~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~~ 161 (320)
|+-|-..+...+.+... -+..||.+| ..|-.|..+|...
T Consensus 1 C~~C~~~I~~~~~~~~~--~~~~~H~~C--------f~C~~C~~~l~~~ 39 (58)
T PF00412_consen 1 CARCGKPIYGTEIVIKA--MGKFWHPEC--------FKCSKCGKPLNDG 39 (58)
T ss_dssp BTTTSSBESSSSEEEEE--TTEEEETTT--------SBETTTTCBTTTS
T ss_pred CCCCCCCccCcEEEEEe--CCcEEEccc--------cccCCCCCccCCC
Confidence 67788888766554322 678888887 6688888877543
No 130
>TIGR00622 ssl1 transcription factor ssl1. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=61.83 E-value=9 Score=31.67 Aligned_cols=70 Identities=26% Similarity=0.416 Sum_probs=44.7
Q ss_pred CCHHHHhhCCCcccchhhhhccCCCCcccccccccccCCc----------ceEEecCCCccccHHHHHHHHhcCCCCccc
Q 048010 85 LDREVIDTFPTFVYSEVKTLKVGKGALECAVCLNEFEDDE----------TLRLIPKCDHVFHPECIDAWLESHTTCPVC 154 (320)
Q Consensus 85 l~~~~i~~lp~~~~~~~~~~~~~~~~~~C~ICl~~~~~~~----------~~r~lp~C~H~FH~~Ci~~Wl~~~~~CP~C 154 (320)
|.+..-.-+|...|.++...+ ......|--|+..|.... ..-.-++|.+.|+.+|=.-|-+.=..||-|
T Consensus 31 LARSyHHLfPl~~f~ev~~~~-~~~~~~C~~C~~~f~~~~~~~~~~~~~~~~y~C~~C~~~FC~dCD~fiHe~Lh~CPGC 109 (112)
T TIGR00622 31 LARSYHHLFPLKAFQEIPLEE-YNGSRFCFGCQGPFPKPPVSPFDELKDSHRYVCAVCKNVFCVDCDVFVHESLHCCPGC 109 (112)
T ss_pred HHHhhhccCCCcccccccccc-cCCCCcccCcCCCCCCcccccccccccccceeCCCCCCccccccchhhhhhccCCcCC
Confidence 334444556666666553221 122356999999987531 122355799999999966666666679999
Q ss_pred c
Q 048010 155 R 155 (320)
Q Consensus 155 R 155 (320)
-
T Consensus 110 ~ 110 (112)
T TIGR00622 110 I 110 (112)
T ss_pred C
Confidence 5
No 131
>KOG4367 consensus Predicted Zn-finger protein [Function unknown]
Probab=60.36 E-value=5 Score=40.49 Aligned_cols=33 Identities=27% Similarity=0.713 Sum_probs=26.4
Q ss_pred CCcccccccccccCCcceEEecCCCccccHHHHHHHH
Q 048010 109 GALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWL 145 (320)
Q Consensus 109 ~~~~C~ICl~~~~~~~~~r~lp~C~H~FH~~Ci~~Wl 145 (320)
+.+.|+||..-|.++ .+|| |+|..|.-|-..-+
T Consensus 3 eelkc~vc~~f~~ep---iil~-c~h~lc~~ca~~~~ 35 (699)
T KOG4367|consen 3 EELKCPVCGSFYREP---IILP-CSHNLCQACARNIL 35 (699)
T ss_pred ccccCceehhhccCc---eEee-cccHHHHHHHHhhc
Confidence 457899999999875 4566 99999999977554
No 132
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=59.97 E-value=4.4 Score=24.67 Aligned_cols=23 Identities=26% Similarity=0.683 Sum_probs=13.5
Q ss_pred ccccccccccCCcceEEecCCCccc
Q 048010 112 ECAVCLNEFEDDETLRLIPKCDHVF 136 (320)
Q Consensus 112 ~C~ICl~~~~~~~~~r~lp~C~H~F 136 (320)
.|+-|..++... .+.-|.|||.|
T Consensus 2 ~CP~C~~~V~~~--~~~Cp~CG~~F 24 (26)
T PF10571_consen 2 TCPECGAEVPES--AKFCPHCGYDF 24 (26)
T ss_pred cCCCCcCCchhh--cCcCCCCCCCC
Confidence 467776665443 33445677776
No 133
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=59.25 E-value=6 Score=27.74 Aligned_cols=43 Identities=26% Similarity=0.594 Sum_probs=20.3
Q ss_pred cccccccccccCCcceEEecCCCccccHHHHHHHHhc-----CCCCcccccc
Q 048010 111 LECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLES-----HTTCPVCRSN 157 (320)
Q Consensus 111 ~~C~ICl~~~~~~~~~r~lp~C~H~FH~~Ci~~Wl~~-----~~~CP~CR~~ 157 (320)
+.|+|....+..+ +|... |.|.-+. =++.||.. .-.||+|.++
T Consensus 3 L~CPls~~~i~~P--~Rg~~-C~H~~CF-Dl~~fl~~~~~~~~W~CPiC~~~ 50 (50)
T PF02891_consen 3 LRCPLSFQRIRIP--VRGKN-CKHLQCF-DLESFLESNQRTPKWKCPICNKP 50 (50)
T ss_dssp SB-TTTSSB-SSE--EEETT---SS--E-EHHHHHHHHHHS---B-TTT---
T ss_pred eeCCCCCCEEEeC--ccCCc-CcccceE-CHHHHHHHhhccCCeECcCCcCc
Confidence 4688888887763 55554 9997421 15567643 3369999764
No 134
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=58.13 E-value=5.7 Score=40.17 Aligned_cols=37 Identities=27% Similarity=0.856 Sum_probs=29.5
Q ss_pred CCCcccccccccccCCcceEEecCCCccccHHHHHHHHhc
Q 048010 108 KGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLES 147 (320)
Q Consensus 108 ~~~~~C~ICl~~~~~~~~~r~lp~C~H~FH~~Ci~~Wl~~ 147 (320)
....+|-||.+.+.. .+..+. |+|.|+..|...++..
T Consensus 68 ~~~~~c~ic~~~~~~--~~~~~~-c~H~~c~~cw~~yl~~ 104 (444)
T KOG1815|consen 68 KGDVQCGICVESYDG--EIIGLG-CGHPFCPPCWTGYLGT 104 (444)
T ss_pred CccccCCcccCCCcc--hhhhcC-CCcHHHHHHHHHHhhh
Confidence 345789999999877 344454 9999999999999854
No 136
>PLN02189 cellulose synthase
Probab=58.06 E-value=15 Score=41.00 Aligned_cols=52 Identities=19% Similarity=0.502 Sum_probs=37.1
Q ss_pred CCccccccccccc---CCcceEEecCCCccccHHHHHHHH-hcCCCCccccccccC
Q 048010 109 GALECAVCLNEFE---DDETLRLIPKCDHVFHPECIDAWL-ESHTTCPVCRSNLAS 160 (320)
Q Consensus 109 ~~~~C~ICl~~~~---~~~~~r~lp~C~H~FH~~Ci~~Wl-~~~~~CP~CR~~l~~ 160 (320)
+...|.||-+++. +++...-...|+--.|..|.+-=- +.++.||-|+.....
T Consensus 33 ~~~~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cyeyer~eg~q~CpqCkt~Y~r 88 (1040)
T PLN02189 33 DGQVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGTQNCPQCKTRYKR 88 (1040)
T ss_pred cCccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchhh
Confidence 3457999999985 444444444588889999984333 346789999998863
No 137
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=58.06 E-value=4.1 Score=43.77 Aligned_cols=42 Identities=19% Similarity=0.567 Sum_probs=30.5
Q ss_pred cccccccccccCC----cceEEecCCCccccHHHHHHHHhcCCCCccc
Q 048010 111 LECAVCLNEFEDD----ETLRLIPKCDHVFHPECIDAWLESHTTCPVC 154 (320)
Q Consensus 111 ~~C~ICl~~~~~~----~~~r~lp~C~H~FH~~Ci~~Wl~~~~~CP~C 154 (320)
..|.-|.+..... +.+..+ .|+|+||..|+..-..++. |-.|
T Consensus 785 ~rc~~c~~~~l~~~~~~~~~~v~-~c~h~yhk~c~~~~~~~~~-~~~~ 830 (846)
T KOG2066|consen 785 ERCSSCFEPNLPSGAAFDSVVVF-HCGHMYHKECLMMESLRNA-CNIE 830 (846)
T ss_pred hhhhhhcccccccCcccceeeEE-EccchhhhcccccHHHhcc-cChh
Confidence 4699998887632 345555 4999999999988775555 6555
No 138
>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=57.88 E-value=14 Score=26.76 Aligned_cols=46 Identities=26% Similarity=0.767 Sum_probs=34.3
Q ss_pred ccccccccccCCc-ceEEecCCC--ccccHHHHHHHHhcCCCCccccccccCCC
Q 048010 112 ECAVCLNEFEDDE-TLRLIPKCD--HVFHPECIDAWLESHTTCPVCRSNLASEP 162 (320)
Q Consensus 112 ~C~ICl~~~~~~~-~~r~lp~C~--H~FH~~Ci~~Wl~~~~~CP~CR~~l~~~~ 162 (320)
.|-.|-.++..+. ..++ |+ ..|+.+|.+.-| +..||.|--.+...|
T Consensus 7 nCE~C~~dLp~~s~~A~I---CSfECTFC~~C~e~~l--~~~CPNCgGelv~RP 55 (57)
T PF06906_consen 7 NCECCDKDLPPDSPEAYI---CSFECTFCADCAETML--NGVCPNCGGELVRRP 55 (57)
T ss_pred CccccCCCCCCCCCcceE---EeEeCcccHHHHHHHh--cCcCcCCCCccccCC
Confidence 4777888887766 2333 54 679999999977 678999988876554
No 139
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=56.52 E-value=7.3 Score=37.88 Aligned_cols=49 Identities=18% Similarity=0.465 Sum_probs=36.6
Q ss_pred cccccccccccCCcceEEecCCCccccHHHHHHHHhcCCCCcccccccc
Q 048010 111 LECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLA 159 (320)
Q Consensus 111 ~~C~ICl~~~~~~~~~r~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~ 159 (320)
..|+||.+.....+...+--.|+|..|..|...-...+..||.||.+..
T Consensus 250 ~s~p~~~~~~~~~d~~~lP~~~~~~~~l~~~~t~~~~~~~~~~~rk~~~ 298 (327)
T KOG2068|consen 250 PSCPICYEDLDLTDSNFLPCPCGFRLCLFCHKTISDGDGRCPGCRKPYE 298 (327)
T ss_pred CCCCCCCCcccccccccccccccccchhhhhhcccccCCCCCccCCccc
Confidence 5799999988555444332248888888888887788899999996553
No 140
>PF07975 C1_4: TFIIH C1-like domain; InterPro: IPR004595 All proteins in this domain for which functions are known are components of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. It includes the yeast transcription factor Ssl1 (Suppressor of stem-loop protein 1) that is essential for translation initiation and affects UV resistance. The C-terminal region is essential for transcription activity. This regions binds three zinc atoms through two independent domain. The first contains a C4 zinc finger motif, whereas the second is characterised by a CX(2)CX(2-4)FCADCD motif. The solution structure of the second C-terminal domain revealed homology with the regulatory domain of protein kinase C [].; GO: 0006281 DNA repair, 0005634 nucleus; PDB: 1Z60_A.
Probab=55.27 E-value=9.4 Score=27.12 Aligned_cols=42 Identities=33% Similarity=0.815 Sum_probs=21.4
Q ss_pred cccccccccCCc------ceEEecCCCccccHHHHHHHH-hcCCCCcccc
Q 048010 113 CAVCLNEFEDDE------TLRLIPKCDHVFHPECIDAWL-ESHTTCPVCR 155 (320)
Q Consensus 113 C~ICl~~~~~~~------~~r~lp~C~H~FH~~Ci~~Wl-~~~~~CP~CR 155 (320)
|--|+..|.... ....-|+|++.|+.+| |.++ +.=.+||-|-
T Consensus 2 CfgC~~~~~~~~~~~~~~~~y~C~~C~~~FC~dC-D~fiHE~LH~CPGC~ 50 (51)
T PF07975_consen 2 CFGCQKPFPDGPEKKADSSRYRCPKCKNHFCIDC-DVFIHETLHNCPGCE 50 (51)
T ss_dssp ETTTTEE-TTS-------EEE--TTTT--B-HHH-HHTTTTTS-SSSTT-
T ss_pred CccCCCCCCCcccccccCCeEECCCCCCccccCc-ChhhhccccCCcCCC
Confidence 555677776642 3445568999999998 3333 3334799883
No 141
>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=54.96 E-value=6.2 Score=35.98 Aligned_cols=39 Identities=33% Similarity=0.847 Sum_probs=26.8
Q ss_pred cccccccccCCcceEEecCCCcc-ccHHHHHHHHhcCCCCcccccccc
Q 048010 113 CAVCLNEFEDDETLRLIPKCDHV-FHPECIDAWLESHTTCPVCRSNLA 159 (320)
Q Consensus 113 C~ICl~~~~~~~~~r~lp~C~H~-FH~~Ci~~Wl~~~~~CP~CR~~l~ 159 (320)
|-.|.+. ...+.++| |.|. +|..|-.. -..||+|+....
T Consensus 161 Cr~C~~~---~~~VlllP-CrHl~lC~~C~~~----~~~CPiC~~~~~ 200 (207)
T KOG1100|consen 161 CRKCGER---EATVLLLP-CRHLCLCGICDES----LRICPICRSPKT 200 (207)
T ss_pred ceecCcC---CceEEeec-ccceEeccccccc----CccCCCCcChhh
Confidence 6666654 55688898 9965 56666432 456999988654
No 142
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=54.77 E-value=7.9 Score=25.33 Aligned_cols=26 Identities=35% Similarity=0.754 Sum_probs=16.6
Q ss_pred ccccccccccCCcc-------eEEecCCCcccc
Q 048010 112 ECAVCLNEFEDDET-------LRLIPKCDHVFH 137 (320)
Q Consensus 112 ~C~ICl~~~~~~~~-------~r~lp~C~H~FH 137 (320)
+|+-|-..|..++. ...-++|+|+|.
T Consensus 4 ~CP~C~~~f~v~~~~l~~~~~~vrC~~C~~~f~ 36 (37)
T PF13719_consen 4 TCPNCQTRFRVPDDKLPAGGRKVRCPKCGHVFR 36 (37)
T ss_pred ECCCCCceEEcCHHHcccCCcEEECCCCCcEee
Confidence 58888888765442 234446888875
No 143
>PF05534 HicB: HicB family; InterPro: IPR008651 This family consists of several bacterial HicB related proteins. The function of HicB is unknown although it is thought to be involved in pilus formation. It has been speculated that HicB performs a function antagonistic to that of pili and yet is necessary for invasion of certain niches [].
Probab=54.47 E-value=8.4 Score=27.16 Aligned_cols=17 Identities=24% Similarity=0.731 Sum_probs=14.7
Q ss_pred ccccccCcHHHHHHHHh
Q 048010 253 ERFTLRLPVDVRKQIMN 269 (320)
Q Consensus 253 ~r~tlrLpe~v~~~~~~ 269 (320)
-.||||+|+++++++..
T Consensus 18 g~~~lRi~~~Lh~~l~~ 34 (51)
T PF05534_consen 18 GKFNLRIPPELHRALAE 34 (51)
T ss_pred CceeeeCCHHHHHHHHH
Confidence 38999999999988773
No 144
>PF02060 ISK_Channel: Slow voltage-gated potassium channel; InterPro: IPR000369 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. Two types of beta subunit (KCNE and KCNAB) are presently known to associate with voltage-gated alpha subunits (Kv, KCNQ and eag-like). However, not all combinations of alpha and beta subunits are possible. The KCNE family of K+ channel subunits are membrane glycoproteins that possess a single transmembrane (TM) domain. They share no structural relationship with the alpha subunit proteins, which possess pore forming domains. The subunits appear to have a regulatory function, modulating the kinetics and voltage dependence of the alpha subunits of voltage-dependent K+ channels. KCNE subunits are formed from short polypeptides of ~130 amino acids, and are divided into five subfamilies: KCNE1 (MinK/IsK), KCNE2 (MiRP1), KCNE3 (MiRP2), KCNE4 (MiRP3) and KCNE1L (AMMECR2). ; GO: 0005249 voltage-gated potassium channel activity, 0006811 ion transport, 0016020 membrane; PDB: 2K21_A.
Probab=54.43 E-value=27 Score=29.52 Aligned_cols=28 Identities=25% Similarity=0.420 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 048010 34 SLAIIIVVLISALFFMGFFSIYIRHCSD 61 (320)
Q Consensus 34 ~~~iiiiilv~~~~ll~~~~i~~r~c~~ 61 (320)
.+.|++++.+..||+++++.-|+|-.+.
T Consensus 44 ~lYIL~vmgfFgff~~gImlsyvRSKK~ 71 (129)
T PF02060_consen 44 YLYILVVMGFFGFFTVGIMLSYVRSKKR 71 (129)
T ss_dssp T-HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eehHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4566666667777777777777775443
No 145
>PF07010 Endomucin: Endomucin; InterPro: IPR010740 This family consists of several mammalian endomucin proteins. Endomucin is an early endothelial-specific antigen that is also expressed on putative hematopoietic progenitor cells.
Probab=54.19 E-value=22 Score=32.98 Aligned_cols=22 Identities=23% Similarity=0.605 Sum_probs=9.7
Q ss_pred cchHHHHHHHHHHHHHHHHHHH
Q 048010 31 FSPSLAIIIVVLISALFFMGFF 52 (320)
Q Consensus 31 ~~~~~~iiiiilv~~~~ll~~~ 52 (320)
+.+.++.+|+|.+++|++++++
T Consensus 190 ilpvvIaliVitl~vf~LvgLy 211 (259)
T PF07010_consen 190 ILPVVIALIVITLSVFTLVGLY 211 (259)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH
Confidence 3343344444444444455543
No 146
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=54.18 E-value=5.1 Score=27.44 Aligned_cols=43 Identities=28% Similarity=0.708 Sum_probs=29.9
Q ss_pred cccccccccCCcceEEecCCCccccHHHHHHHHh------cCCCCccccc
Q 048010 113 CAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLE------SHTTCPVCRS 156 (320)
Q Consensus 113 C~ICl~~~~~~~~~r~lp~C~H~FH~~Ci~~Wl~------~~~~CP~CR~ 156 (320)
|.||......++.+ .-..|+..||..|+..=.. ..-.||.|+.
T Consensus 2 C~vC~~~~~~~~~i-~C~~C~~~~H~~C~~~~~~~~~~~~~~w~C~~C~~ 50 (51)
T PF00628_consen 2 CPVCGQSDDDGDMI-QCDSCNRWYHQECVGPPEKAEEIPSGDWYCPNCRP 50 (51)
T ss_dssp BTTTTSSCTTSSEE-EBSTTSCEEETTTSTSSHSHHSHHSSSBSSHHHHH
T ss_pred CcCCCCcCCCCCeE-EcCCCChhhCcccCCCChhhccCCCCcEECcCCcC
Confidence 88999954444444 4446999999999876542 2457888863
No 147
>PF15050 SCIMP: SCIMP protein
Probab=53.91 E-value=18 Score=30.27 Aligned_cols=24 Identities=21% Similarity=0.358 Sum_probs=11.9
Q ss_pred CCCcchHHHHHHHHHHHHHHHHHHH
Q 048010 28 NMKFSPSLAIIIVVLISALFFMGFF 52 (320)
Q Consensus 28 ~~~~~~~~~iiiiilv~~~~ll~~~ 52 (320)
...||.++++. +|+|++.+-++++
T Consensus 5 r~nFWiiLAVa-II~vS~~lglIly 28 (133)
T PF15050_consen 5 RDNFWIILAVA-IILVSVVLGLILY 28 (133)
T ss_pred HhchHHHHHHH-HHHHHHHHHHHHH
Confidence 45677666665 3334444433333
No 148
>PF14654 Epiglycanin_C: Mucin, catalytic, TM and cytoplasmic tail region
Probab=53.13 E-value=40 Score=27.24 Aligned_cols=30 Identities=20% Similarity=0.434 Sum_probs=15.4
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 048010 31 FSPSLAIIIVVLISALFFMGFFSIYIRHCSD 61 (320)
Q Consensus 31 ~~~~~~iiiiilv~~~~ll~~~~i~~r~c~~ 61 (320)
|..+++.+..+++++=++.+++ +|+|.+..
T Consensus 18 WeIfLItLasVvvavGl~aGLf-FcvR~~ls 47 (106)
T PF14654_consen 18 WEIFLITLASVVVAVGLFAGLF-FCVRNSLS 47 (106)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH-HHhhhccc
Confidence 4444444455555555555554 55566543
No 149
>PF10717 ODV-E18: Occlusion-derived virus envelope protein ODV-E18; InterPro: IPR019655 Baculovirus occlusion-derived virus (ODV) derives its envelope from an intranuclear membrane source. Occlusion-derived viral envelope proteins that are detected in viral-induced intranuclear microvesicles, but not detected in the plasma membrane, cytoplasmic membranes, or the nuclear envelope. This entry represents ODV-E18 protein which is encoded by baculovirus late genes with transcription initiating from a TAAG motif. ODV-E18 exists as a dimer in the ODV envelope, which contains a hydrophobic domain that putatively acts as a target or retention signal for intranuclear microvesicles []. ; GO: 0019031 viral envelope
Probab=51.65 E-value=18 Score=28.34 Aligned_cols=10 Identities=10% Similarity=0.172 Sum_probs=4.7
Q ss_pred CCCcchHHHH
Q 048010 28 NMKFSPSLAI 37 (320)
Q Consensus 28 ~~~~~~~~~i 37 (320)
-..+.+.++.
T Consensus 19 ~~~l~pn~lM 28 (85)
T PF10717_consen 19 LNGLNPNTLM 28 (85)
T ss_pred ccccChhHHH
Confidence 3445554443
No 150
>PLN02436 cellulose synthase A
Probab=51.43 E-value=22 Score=39.84 Aligned_cols=51 Identities=24% Similarity=0.573 Sum_probs=36.5
Q ss_pred Cccccccccccc---CCcceEEecCCCccccHHHHHHHH-hcCCCCccccccccC
Q 048010 110 ALECAVCLNEFE---DDETLRLIPKCDHVFHPECIDAWL-ESHTTCPVCRSNLAS 160 (320)
Q Consensus 110 ~~~C~ICl~~~~---~~~~~r~lp~C~H~FH~~Ci~~Wl-~~~~~CP~CR~~l~~ 160 (320)
...|.||-+++. +++...-...|+--.|..|.+-=. +.++.||-|+.....
T Consensus 36 ~~iCqICGD~Vg~t~dGe~FVACn~C~fpvCr~Cyeyer~eg~~~Cpqckt~Y~r 90 (1094)
T PLN02436 36 GQTCQICGDEIELTVDGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKR 90 (1094)
T ss_pred CccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchhh
Confidence 458999999974 455444444588889999984433 346789999998863
No 151
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=50.47 E-value=8.3 Score=25.17 Aligned_cols=26 Identities=35% Similarity=0.726 Sum_probs=16.2
Q ss_pred ccccccccccCCcc-------eEEecCCCcccc
Q 048010 112 ECAVCLNEFEDDET-------LRLIPKCDHVFH 137 (320)
Q Consensus 112 ~C~ICl~~~~~~~~-------~r~lp~C~H~FH 137 (320)
+|+=|...|..++. ...-++|+|+|+
T Consensus 4 ~Cp~C~~~y~i~d~~ip~~g~~v~C~~C~~~f~ 36 (36)
T PF13717_consen 4 TCPNCQAKYEIDDEKIPPKGRKVRCSKCGHVFF 36 (36)
T ss_pred ECCCCCCEEeCCHHHCCCCCcEEECCCCCCEeC
Confidence 57888888875443 123345888874
No 152
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=48.85 E-value=5.7 Score=39.55 Aligned_cols=51 Identities=27% Similarity=0.608 Sum_probs=0.0
Q ss_pred CcccccccccccC----------------CcceEEecCCCccccHHHHHHHHhc---------CCCCccccccccCC
Q 048010 110 ALECAVCLNEFED----------------DETLRLIPKCDHVFHPECIDAWLES---------HTTCPVCRSNLASE 161 (320)
Q Consensus 110 ~~~C~ICl~~~~~----------------~~~~r~lp~C~H~FH~~Ci~~Wl~~---------~~~CP~CR~~l~~~ 161 (320)
..+|++|+..=.- .-.....| |||+--.....-|-+. +..||.|-.+|...
T Consensus 328 ~r~CPlCr~~g~~V~L~mG~E~afyvD~~~pthaF~P-CGHv~SekTa~yWs~i~lPhGt~~f~a~CPFCa~~L~g~ 403 (416)
T PF04710_consen 328 SRTCPLCRQVGPYVPLWMGCEPAFYVDSGPPTHAFNP-CGHVCSEKTAKYWSQIPLPHGTHAFHAACPFCATPLDGE 403 (416)
T ss_dssp -----------------------------------------------------------------------------
T ss_pred cccCCCccccCCceeEeeccccceeecCCCCceeecc-cccccchhhhhhhhcCCCCCCcccccccCCcccCcccCC
Confidence 5689999965321 11335666 9999888889999642 34799998888643
No 153
>PF01402 RHH_1: Ribbon-helix-helix protein, copG family; InterPro: IPR002145 CopG, also known as RepA, is responsible for the regulation of plasmid copy number. It binds to the repAB promoter and controls synthesis of the plasmid replication initiator protein RepB. Many bacterial transcription regulation proteins bind DNA through a 'helix-turn-helix' motif, nevertheless CopG displays a fully defined HTH-motif structure that is involved not in DNA-binding, but in the maintenance of the intrinsic dimeric functional structure and cooperativity [, ].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2BJ3_B 2BJ8_A 2BJ1_A 2BJ9_A 2BJ7_B 1EA4_L 2CPG_C 1B01_B 2BA3_A 2K9I_B ....
Probab=48.19 E-value=7.6 Score=25.09 Aligned_cols=25 Identities=40% Similarity=0.622 Sum_probs=18.0
Q ss_pred cccccCcHHHHHHHH--hhhcccccce
Q 048010 254 RFTLRLPVDVRKQIM--NRELNRSNSL 278 (320)
Q Consensus 254 r~tlrLpe~v~~~~~--~~~l~r~~s~ 278 (320)
|.|++||+++..++- ..+..+++|.
T Consensus 1 Riti~l~~~~~~~l~~~a~~~g~s~s~ 27 (39)
T PF01402_consen 1 RITIRLPDELYERLDELAKELGRSRSE 27 (39)
T ss_dssp EEEEEEEHHHHHHHHHHHHHHTSSHHH
T ss_pred CeEEEeCHHHHHHHHHHHHHHCcCHHH
Confidence 689999999987655 4455565554
No 154
>PF11023 DUF2614: Protein of unknown function (DUF2614); InterPro: IPR020912 This entry describes proteins of unknown function, which are thought to be membrane proteins.; GO: 0005887 integral to plasma membrane
Probab=47.76 E-value=60 Score=26.89 Aligned_cols=27 Identities=22% Similarity=0.562 Sum_probs=19.2
Q ss_pred CCCccccHHHHHHHHhcCCCCccccccccCCCC
Q 048010 131 KCDHVFHPECIDAWLESHTTCPVCRSNLASEPG 163 (320)
Q Consensus 131 ~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~~~~ 163 (320)
.|+|. .+-|.+...|+.|+.++..++.
T Consensus 74 ~C~K~------TKmLGr~D~CM~C~~pLTLd~~ 100 (114)
T PF11023_consen 74 NCGKQ------TKMLGRVDACMHCKEPLTLDPS 100 (114)
T ss_pred CCCCh------HhhhchhhccCcCCCcCccCch
Confidence 56663 3445566789999999987654
No 155
>KOG3579 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=47.10 E-value=10 Score=36.34 Aligned_cols=39 Identities=21% Similarity=0.404 Sum_probs=29.2
Q ss_pred CcccccccccccCCcceEEecCCCccccHHHHHHHHhcC
Q 048010 110 ALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESH 148 (320)
Q Consensus 110 ~~~C~ICl~~~~~~~~~r~lp~C~H~FH~~Ci~~Wl~~~ 148 (320)
.+.|.+|.|.+++-.-|..-..=.|.||..|-++-+|.+
T Consensus 268 pLcCTLC~ERLEDTHFVQCPSVp~HKFCFPCSResIK~Q 306 (352)
T KOG3579|consen 268 PLCCTLCHERLEDTHFVQCPSVPSHKFCFPCSRESIKQQ 306 (352)
T ss_pred ceeehhhhhhhccCceeecCCCcccceecccCHHHHHhh
Confidence 467999999999865552222235999999999998753
No 156
>PHA02657 hypothetical protein; Provisional
Probab=46.92 E-value=24 Score=27.79 Aligned_cols=31 Identities=16% Similarity=0.396 Sum_probs=14.8
Q ss_pred CCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 048010 27 SNMKFSPSLAIIIVVLISALFFMGFFSIYIRHC 59 (320)
Q Consensus 27 ~~~~~~~~~~iiiiilv~~~~ll~~~~i~~r~c 59 (320)
-..+|..+|+|. +++.++.++.|+.+|+-+|
T Consensus 20 ~~~~~~~imVit--vfv~vI~il~flLLYLvkW 50 (95)
T PHA02657 20 MKINFESILVFT--IFIFVVCILIYLLIYLVDW 50 (95)
T ss_pred EEecchhhhHHH--HHHHHHHHHHHHHHHHHHH
Confidence 344555544443 3344444455555555444
No 157
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=45.78 E-value=12 Score=37.26 Aligned_cols=71 Identities=21% Similarity=0.315 Sum_probs=43.2
Q ss_pred CCCCHHHHhhCCCcccchh-hhhccCCCCcccccccccccCCc--ceEEecCCCccccHHHHHHHHhcCCCCccc
Q 048010 83 RGLDREVIDTFPTFVYSEV-KTLKVGKGALECAVCLNEFEDDE--TLRLIPKCDHVFHPECIDAWLESHTTCPVC 154 (320)
Q Consensus 83 ~gl~~~~i~~lp~~~~~~~-~~~~~~~~~~~C~ICl~~~~~~~--~~r~lp~C~H~FH~~Ci~~Wl~~~~~CP~C 154 (320)
.+++=+..+++....+.+. ......+....|+.|.-.++... ...... |+|.|+..|...|......|..|
T Consensus 278 ~~~sC~eykk~~~~~~~d~~~~~~la~~wr~CpkC~~~ie~~~GCnhm~Cr-C~~~fcy~C~~~~~~~~~~~~~~ 351 (384)
T KOG1812|consen 278 ANLSCEEYKKLNPEEYVDDITLKYLAKRWRQCPKCKFMIELSEGCNHMTCR-CGHQFCYMCGGDWKTHNGECYEC 351 (384)
T ss_pred CCCCHHHHHHhCCcccccHHHHHHHHHhcCcCcccceeeeecCCcceEEee-ccccchhhcCcchhhCCccccCc
Confidence 3455566666655444331 11111134567888877665333 333444 99999999999998777777555
No 158
>PF01363 FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The FYVE zinc finger is named after four proteins that it has been found in: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two zinc ions []. The FYVE finger has eight potential zinc coordinating cysteine positions. Many members of this family also include two histidines in a motif R+HHC+XCG, where + represents a charged residue and X any residue. FYVE-type domains are divided into two known classes: FYVE domains that specifically bind to phosphatidylinositol 3-phosphate in lipid bilayers and FYVE-related domains of undetermined function []. Those that bind to phosphatidylinositol 3-phosphate are often found in proteins targeted to lipid membranes that are involved in regulating membrane traffic [, , ]. Most FYVE domains target proteins to endosomes by binding specifically to phosphatidylinositol-3-phosphate at the membrane surface. By contrast, the CARP2 FYVE-like domain is not optimized to bind to phosphoinositides or insert into lipid bilayers. FYVE domains are distinguished from other zinc fingers by three signature sequences: an N-terminal WxxD motif, a basic R(R/K)HHCR patch, and a C-terminal RVC motif. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding; PDB: 1HYI_A 1JOC_B 1HYJ_A 1DVP_A 3ZYQ_A 4AVX_A 1VFY_A 3T7L_A 1X4U_A 1WFK_A ....
Probab=45.24 E-value=8.8 Score=28.08 Aligned_cols=37 Identities=19% Similarity=0.396 Sum_probs=18.7
Q ss_pred CCcccccccccccCCcceEEecCCCccccHHHHHHHH
Q 048010 109 GALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWL 145 (320)
Q Consensus 109 ~~~~C~ICl~~~~~~~~~r~lp~C~H~FH~~Ci~~Wl 145 (320)
+...|.+|...|.--..-.--..||++|+..|.....
T Consensus 8 ~~~~C~~C~~~F~~~~rrhhCr~CG~~vC~~Cs~~~~ 44 (69)
T PF01363_consen 8 EASNCMICGKKFSLFRRRHHCRNCGRVVCSSCSSQRI 44 (69)
T ss_dssp G-SB-TTT--B-BSSS-EEE-TTT--EEECCCS-EEE
T ss_pred CCCcCcCcCCcCCCceeeEccCCCCCEECCchhCCEE
Confidence 3467999999997544333344699999999976543
No 159
>PRK05978 hypothetical protein; Provisional
Probab=45.15 E-value=15 Score=31.92 Aligned_cols=28 Identities=18% Similarity=0.587 Sum_probs=22.0
Q ss_pred CccccHHHHHHHHhcCCCCccccccccCCCCCC
Q 048010 133 DHVFHPECIDAWLESHTTCPVCRSNLASEPGET 165 (320)
Q Consensus 133 ~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~~~~~~ 165 (320)
||.|+ .+|+.+..||.|-.++...+.+.
T Consensus 42 G~LF~-----g~Lkv~~~C~~CG~~~~~~~a~D 69 (148)
T PRK05978 42 GKLFR-----AFLKPVDHCAACGEDFTHHRADD 69 (148)
T ss_pred Ccccc-----cccccCCCccccCCccccCCccc
Confidence 47775 78999999999998887665443
No 160
>cd00065 FYVE FYVE domain; Zinc-binding domain; targets proteins to membrane lipids via interaction with phosphatidylinositol-3-phosphate, PI3P; present in Fab1, YOTB, Vac1, and EEA1;
Probab=43.55 E-value=17 Score=25.31 Aligned_cols=35 Identities=17% Similarity=0.431 Sum_probs=24.8
Q ss_pred cccccccccccCCcceEEecCCCccccHHHHHHHH
Q 048010 111 LECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWL 145 (320)
Q Consensus 111 ~~C~ICl~~~~~~~~~r~lp~C~H~FH~~Ci~~Wl 145 (320)
..|.+|-..|..-..-..-..||++|+..|.....
T Consensus 3 ~~C~~C~~~F~~~~rk~~Cr~Cg~~~C~~C~~~~~ 37 (57)
T cd00065 3 SSCMGCGKPFTLTRRRHHCRNCGRIFCSKCSSNRI 37 (57)
T ss_pred CcCcccCccccCCccccccCcCcCCcChHHcCCee
Confidence 46999988887644333333599999999976654
No 161
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=43.30 E-value=16 Score=39.36 Aligned_cols=48 Identities=31% Similarity=0.663 Sum_probs=31.7
Q ss_pred CCCcccccccccccC---------CcceEEecCCCccccHHHHHHHHhcCCCCcccccccc
Q 048010 108 KGALECAVCLNEFED---------DETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLA 159 (320)
Q Consensus 108 ~~~~~C~ICl~~~~~---------~~~~r~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~ 159 (320)
..+..|+-|...|-. +...-+.|.|.|--|..=|.. +..||+|...+.
T Consensus 1129 ~~~~~c~ec~~kfP~CiasG~pIt~~~fWlC~~CkH~a~~~EIs~----y~~CPLCHs~~~ 1185 (1189)
T KOG2041|consen 1129 PYDLQCSECQTKFPVCIASGRPITDNIFWLCPRCKHRAHQHEISK----YNCCPLCHSMES 1185 (1189)
T ss_pred ccCCCChhhcCcCceeeccCCccccceEEEccccccccccccccc----cccCccccChhh
Confidence 345567777776631 223345567999888776655 678999987653
No 162
>KOG2807 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription; Replication, recombination and repair]
Probab=42.83 E-value=23 Score=34.59 Aligned_cols=71 Identities=27% Similarity=0.450 Sum_probs=46.7
Q ss_pred CCCHHHHhhCCCcccchhhhhccCCCCcccccccccccCCcceEEecCCCccccHHHHHHHHhcCCCCccccc
Q 048010 84 GLDREVIDTFPTFVYSEVKTLKVGKGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRS 156 (320)
Q Consensus 84 gl~~~~i~~lp~~~~~~~~~~~~~~~~~~C~ICl~~~~~~~~~r~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~ 156 (320)
.|.+..-.-+|...|.++.... ..+...|-.|.++.......+.- .|.|+||.+|=.---++=..||-|..
T Consensus 305 hLARSyhhL~PL~~F~Eip~~~-~~~~~~Cf~C~~~~~~~~~y~C~-~Ck~~FCldCDv~iHesLh~CpgCeh 375 (378)
T KOG2807|consen 305 HLARSYHHLFPLKPFVEIPETE-YNGSRFCFACQGELLSSGRYRCE-SCKNVFCLDCDVFIHESLHNCPGCEH 375 (378)
T ss_pred HHHHHHHhhcCCcchhhccccc-cCCCcceeeeccccCCCCcEEch-hccceeeccchHHHHhhhhcCCCcCC
Confidence 3445555567777776654322 12344599998888777666655 59999999994443344457999963
No 163
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=42.79 E-value=11 Score=37.74 Aligned_cols=67 Identities=27% Similarity=0.450 Sum_probs=7.6
Q ss_pred HHHhhCCCcccchhhhhccCCCCcccccccccccCC-----------cceEEecCCCccccHHHHHHHHh------cCCC
Q 048010 88 EVIDTFPTFVYSEVKTLKVGKGALECAVCLNEFEDD-----------ETLRLIPKCDHVFHPECIDAWLE------SHTT 150 (320)
Q Consensus 88 ~~i~~lp~~~~~~~~~~~~~~~~~~C~ICl~~~~~~-----------~~~r~lp~C~H~FH~~Ci~~Wl~------~~~~ 150 (320)
+-+...|+...-+.-..+....-.+|++=|..+.-. +....+ +|||++- ...|-. ...+
T Consensus 255 ~gL~~~Pt~~~Le~~~~~lNa~rpQCPVglnTL~fp~~~~~~~~~~~qP~VYl-~CGHVhG---~h~Wg~~~~~~~~~r~ 330 (416)
T PF04710_consen 255 EGLAHSPTKKHLEALRQELNAGRPQCPVGLNTLVFPSKSRKDVPDERQPWVYL-NCGHVHG---YHNWGQDSDRDPRSRT 330 (416)
T ss_dssp HHHHHS-CCHHHHHHCHHSS------------------------------------------------------------
T ss_pred hhhhcCCcHHHHHHHHHHHhhcCCCCCcCCCccccccccccccccccCceeec-cccceee---eccccccccccccccc
Confidence 445556665432222222333446799877766422 122455 4999876 457853 2458
Q ss_pred Cccccccc
Q 048010 151 CPVCRSNL 158 (320)
Q Consensus 151 CP~CR~~l 158 (320)
||+||..-
T Consensus 331 CPlCr~~g 338 (416)
T PF04710_consen 331 CPLCRQVG 338 (416)
T ss_dssp --------
T ss_pred CCCccccC
Confidence 99998743
No 164
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=42.71 E-value=28 Score=33.58 Aligned_cols=11 Identities=18% Similarity=0.289 Sum_probs=4.4
Q ss_pred HHHHHHHHHHh
Q 048010 48 FMGFFSIYIRH 58 (320)
Q Consensus 48 ll~~~~i~~r~ 58 (320)
+|+++++.+|+
T Consensus 271 IMvIIYLILRY 281 (299)
T PF02009_consen 271 IMVIIYLILRY 281 (299)
T ss_pred HHHHHHHHHHH
Confidence 33333343443
No 165
>COG5416 Uncharacterized integral membrane protein [Function unknown]
Probab=42.71 E-value=30 Score=27.87 Aligned_cols=14 Identities=14% Similarity=0.247 Sum_probs=7.3
Q ss_pred chhhhhhhhhhccC
Q 048010 2 LLVAHALPLSLAQR 15 (320)
Q Consensus 2 l~~~~~~~~~~~~~ 15 (320)
|++++++.++.-+.
T Consensus 32 lillLllifav~Nt 45 (98)
T COG5416 32 LILLLLLIFAVINT 45 (98)
T ss_pred HHHHHHHHHHHhcc
Confidence 45555555554433
No 166
>PHA02975 hypothetical protein; Provisional
Probab=42.49 E-value=69 Score=24.17 Aligned_cols=15 Identities=20% Similarity=0.299 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHHH
Q 048010 43 ISALFFMGFFSIYIR 57 (320)
Q Consensus 43 v~~~~ll~~~~i~~r 57 (320)
+.+++++.+.+.|.+
T Consensus 52 ~~v~~~~~~~flYLK 66 (69)
T PHA02975 52 IFITCIAVFTFLYLK 66 (69)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333344444543
No 167
>PHA02692 hypothetical protein; Provisional
Probab=42.39 E-value=54 Score=24.83 Aligned_cols=22 Identities=18% Similarity=0.306 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 048010 36 AIIIVVLISALFFMGFFSIYIR 57 (320)
Q Consensus 36 ~iiiiilv~~~~ll~~~~i~~r 57 (320)
.++++.++.+++++.+.+.|.+
T Consensus 47 ~~ii~~~~~~~~~vll~flYLK 68 (70)
T PHA02692 47 TVFLIGLIAAAIGVLLCFHYLK 68 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3333333444444444445543
No 168
>PHA00617 ribbon-helix-helix domain containing protein
Probab=39.38 E-value=22 Score=27.62 Aligned_cols=37 Identities=16% Similarity=0.367 Sum_probs=25.3
Q ss_pred CCCcc-CCCCCcccccccCcHHHHHHHH--hhhcccccce
Q 048010 242 GHSLV-QPGEDTERFTLRLPVDVRKQIM--NRELNRSNSL 278 (320)
Q Consensus 242 ghs~~-~~~~~~~r~tlrLpe~v~~~~~--~~~l~r~~s~ 278 (320)
||-+. ..++.+..+++|||+++..++- .....+++|-
T Consensus 28 ~~~~~~~~~~~m~~iSVrLp~eL~erLD~LA~~~GrsRSe 67 (80)
T PHA00617 28 GDTIELTLTETMDVISFKLPPELNAKLEQVAIKMKKSKSE 67 (80)
T ss_pred CCccccccCCCceEEEEECCHHHHHHHHHHHHHhCcCHHH
Confidence 56443 2356688999999999988776 3455555554
No 169
>PHA02898 virion envelope protein; Provisional
Probab=39.30 E-value=58 Score=25.80 Aligned_cols=23 Identities=22% Similarity=0.408 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhccC
Q 048010 39 IVVLISALFFMGFFSIYIRHCSD 61 (320)
Q Consensus 39 iiilv~~~~ll~~~~i~~r~c~~ 61 (320)
+++-+++++-+.++..|.|+|..
T Consensus 52 FIlgivl~lG~~ifs~y~r~C~~ 74 (92)
T PHA02898 52 FILAIILILGIIFFKGYNMFCGG 74 (92)
T ss_pred HHHHHHHHHHHHHHHHHhhhcCC
Confidence 33334444456677778888874
No 170
>PHA02819 hypothetical protein; Provisional
Probab=39.11 E-value=91 Score=23.66 Aligned_cols=16 Identities=25% Similarity=0.733 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHHH
Q 048010 42 LISALFFMGFFSIYIR 57 (320)
Q Consensus 42 lv~~~~ll~~~~i~~r 57 (320)
++.+++++.+.++|.+
T Consensus 53 l~~~~~~~~~~flYLK 68 (71)
T PHA02819 53 LVTIVFVIIFIIFYLK 68 (71)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333444444445544
No 171
>PF14979 TMEM52: Transmembrane 52
Probab=38.57 E-value=58 Score=28.23 Aligned_cols=32 Identities=25% Similarity=0.507 Sum_probs=15.6
Q ss_pred CcchHHHHHHHHHHH-HHHHHHHHHHHHHhccC
Q 048010 30 KFSPSLAIIIVVLIS-ALFFMGFFSIYIRHCSD 61 (320)
Q Consensus 30 ~~~~~~~iiiiilv~-~~~ll~~~~i~~r~c~~ 61 (320)
.|.-.+.|.+++++. ++++-|+...++|.|..
T Consensus 15 ~W~~LWyIwLill~~~llLLCG~ta~C~rfCCl 47 (154)
T PF14979_consen 15 RWSSLWYIWLILLIGFLLLLCGLTASCVRFCCL 47 (154)
T ss_pred ceehhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344334444443333 33445666677784443
No 172
>PF01708 Gemini_mov: Geminivirus putative movement protein ; InterPro: IPR002621 This family consists of putative movement proteins from Maize streak virus and Wheat dwarf virus [].; GO: 0046740 spread of virus in host, cell to cell, 0016021 integral to membrane
Probab=38.38 E-value=25 Score=27.91 Aligned_cols=36 Identities=11% Similarity=0.203 Sum_probs=25.5
Q ss_pred CCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 048010 26 YSNMKFSPSLAIIIVVLISALFFMGFFSIYIRHCSD 61 (320)
Q Consensus 26 ~~~~~~~~~~~iiiiilv~~~~ll~~~~i~~r~c~~ 61 (320)
.+...|+....+++++|+++.++.+...+++|-|..
T Consensus 29 ss~~~ws~vv~v~i~~lvaVg~~YL~y~~fLkDlIl 64 (91)
T PF01708_consen 29 SSGLPWSRVVEVAIFTLVAVGCLYLAYTWFLKDLIL 64 (91)
T ss_pred CCCCcceeEeeeeehHHHHHHHHHHHHHHHHHHHhh
Confidence 345667777777777777777777777777777653
No 173
>PF06844 DUF1244: Protein of unknown function (DUF1244); InterPro: IPR009654 This family consists of several short bacterial proteins of around 100 residues in length. The function of this family is unknown.; PDB: 2O35_A 3FYB_B.
Probab=38.36 E-value=19 Score=26.98 Aligned_cols=12 Identities=25% Similarity=0.872 Sum_probs=8.6
Q ss_pred cccHHHHHHHHh
Q 048010 135 VFHPECIDAWLE 146 (320)
Q Consensus 135 ~FH~~Ci~~Wl~ 146 (320)
-||..|+.+|+.
T Consensus 11 gFCRNCLskWy~ 22 (68)
T PF06844_consen 11 GFCRNCLSKWYR 22 (68)
T ss_dssp S--HHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 399999999985
No 174
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=38.08 E-value=36 Score=26.37 Aligned_cols=52 Identities=15% Similarity=0.471 Sum_probs=21.4
Q ss_pred CCccccccccccc---CCcceEEecCCCccccHHHHHHHHh-cCCCCccccccccC
Q 048010 109 GALECAVCLNEFE---DDETLRLIPKCDHVFHPECIDAWLE-SHTTCPVCRSNLAS 160 (320)
Q Consensus 109 ~~~~C~ICl~~~~---~~~~~r~lp~C~H~FH~~Ci~~Wl~-~~~~CP~CR~~l~~ 160 (320)
+...|-||-+++- +++.....-.|+--.+..|.+-=.+ .++.||-|+.+...
T Consensus 8 ~~qiCqiCGD~VGl~~~Ge~FVAC~eC~fPvCr~CyEYErkeg~q~CpqCkt~ykr 63 (80)
T PF14569_consen 8 NGQICQICGDDVGLTENGEVFVACHECAFPVCRPCYEYERKEGNQVCPQCKTRYKR 63 (80)
T ss_dssp SS-B-SSS--B--B-SSSSB--S-SSS-----HHHHHHHHHTS-SB-TTT--B---
T ss_pred CCcccccccCccccCCCCCEEEEEcccCCccchhHHHHHhhcCcccccccCCCccc
Confidence 3467999999875 3443333334777788889876553 57799999987763
No 175
>PHA02680 ORF090 IMV phosphorylated membrane protein; Provisional
Probab=38.08 E-value=69 Score=25.33 Aligned_cols=15 Identities=27% Similarity=0.308 Sum_probs=7.9
Q ss_pred chhhhhhhhhhccCC
Q 048010 2 LLVAHALPLSLAQRS 16 (320)
Q Consensus 2 l~~~~~~~~~~~~~~ 16 (320)
+|+++...|+-..-|
T Consensus 20 iLL~~ACIFAfidFS 34 (91)
T PHA02680 20 LLLTAACVFAFVDFS 34 (91)
T ss_pred HHHHHHHHHhhhhhh
Confidence 455555555555443
No 176
>PHA03164 hypothetical protein; Provisional
Probab=38.03 E-value=17 Score=28.07 Aligned_cols=29 Identities=14% Similarity=0.319 Sum_probs=13.7
Q ss_pred CCCCCCCCcchHHHHHHHHHHHHHHHHHH
Q 048010 23 VDPYSNMKFSPSLAIIIVVLISALFFMGF 51 (320)
Q Consensus 23 ~~~~~~~~~~~~~~iiiiilv~~~~ll~~ 51 (320)
++-|.+-.-...++++.++.++++++++|
T Consensus 48 wnlwnnrRktftFlvLtgLaIamILfiif 76 (88)
T PHA03164 48 WNLWNNRRKTFTFLVLTGLAIAMILFIIF 76 (88)
T ss_pred HHHHHhhhheeehHHHHHHHHHHHHHHHH
Confidence 34455544444445554544444444443
No 177
>PF09943 DUF2175: Uncharacterized protein conserved in archaea (DUF2175); InterPro: IPR018686 This family of various hypothetical archaeal proteins has no known function.
Probab=38.02 E-value=26 Score=28.45 Aligned_cols=32 Identities=19% Similarity=0.415 Sum_probs=27.0
Q ss_pred cccccccccccCCcceEEecCCCccccHHHHHHH
Q 048010 111 LECAVCLNEFEDDETLRLIPKCDHVFHPECIDAW 144 (320)
Q Consensus 111 ~~C~ICl~~~~~~~~~r~lp~C~H~FH~~Ci~~W 144 (320)
..|.||-+++..|+....+.+ -..|.+|+..=
T Consensus 3 WkC~iCg~~I~~gqlFTF~~k--G~VH~~C~~~~ 34 (101)
T PF09943_consen 3 WKCYICGKPIYEGQLFTFTKK--GPVHYECFREK 34 (101)
T ss_pred eEEEecCCeeeecceEEEecC--CcEeHHHHHHH
Confidence 469999999999998888874 66799998874
No 178
>PHA03054 IMV membrane protein; Provisional
Probab=37.45 E-value=72 Score=24.21 Aligned_cols=16 Identities=13% Similarity=0.498 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHHH
Q 048010 42 LISALFFMGFFSIYIR 57 (320)
Q Consensus 42 lv~~~~ll~~~~i~~r 57 (320)
++.+++++.+.++|.+
T Consensus 55 l~~v~~~~l~~flYLK 70 (72)
T PHA03054 55 FFIVLILLLLIYLYLK 70 (72)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 3333444444444543
No 179
>PHA02844 putative transmembrane protein; Provisional
Probab=36.67 E-value=1e+02 Score=23.68 Aligned_cols=16 Identities=19% Similarity=0.374 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHH
Q 048010 42 LISALFFMGFFSIYIR 57 (320)
Q Consensus 42 lv~~~~ll~~~~i~~r 57 (320)
++.+++++.+.++|.+
T Consensus 55 i~~v~~~~~~~flYLK 70 (75)
T PHA02844 55 IIFVVFATFLTFLYLK 70 (75)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 3444444444445554
No 180
>smart00064 FYVE Protein present in Fab1, YOTB, Vac1, and EEA1. The FYVE zinc finger is named after four proteins where it was first found: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two Zn2+ ions. The FYVE finger has eight potential zinc coordinating cysteine positions. The FYVE finger is structurally related to the PHA03048 IMV membrane protein; Provisional
Probab=36.48 E-value=66 Score=25.57 Aligned_cols=24 Identities=29% Similarity=0.361 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCC
Q 048010 39 IVVLISALFFMGFFSIYIRHCSDS 62 (320)
Q Consensus 39 iiilv~~~~ll~~~~i~~r~c~~~ 62 (320)
+++-+++++-+.+++.|-|+|...
T Consensus 51 FIlgivl~lG~~ifsmy~r~C~~~ 74 (93)
T PHA03048 51 FVLGIVMTIGMLIYSMWGRYCTPS 74 (93)
T ss_pred HHHHHHHHHHHHHHHHHhcccCCC
Confidence 333334444556667788888743
No 182
>PLN02400 cellulose synthase
Probab=36.18 E-value=43 Score=37.67 Aligned_cols=51 Identities=14% Similarity=0.454 Sum_probs=35.2
Q ss_pred Cccccccccccc---CCcceEEecCCCccccHHHHHHHH-hcCCCCccccccccC
Q 048010 110 ALECAVCLNEFE---DDETLRLIPKCDHVFHPECIDAWL-ESHTTCPVCRSNLAS 160 (320)
Q Consensus 110 ~~~C~ICl~~~~---~~~~~r~lp~C~H~FH~~Ci~~Wl-~~~~~CP~CR~~l~~ 160 (320)
...|-||-+++. +++...-.-.|+--.|..|.+-=- +.++.||-|+....-
T Consensus 36 gqiCqICGD~VG~t~dGe~FVAC~eCaFPVCRpCYEYERkeGnq~CPQCkTrYkR 90 (1085)
T PLN02400 36 GQICQICGDDVGVTETGDVFVACNECAFPVCRPCYEYERKDGTQCCPQCKTRYRR 90 (1085)
T ss_pred CceeeecccccCcCCCCCEEEEEccCCCccccchhheecccCCccCcccCCcccc
Confidence 458999999975 444433333477778999984212 346789999998863
No 183
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=36.03 E-value=73 Score=24.19 Aligned_cols=12 Identities=42% Similarity=0.531 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHH
Q 048010 34 SLAIIIVVLISA 45 (320)
Q Consensus 34 ~~~iiiiilv~~ 45 (320)
+++|+++++..+
T Consensus 4 ~lail~ivl~ll 15 (71)
T COG3763 4 WLAILLIVLALL 15 (71)
T ss_pred HHHHHHHHHHHH
Confidence 445544443333
No 184
>PHA02650 hypothetical protein; Provisional
Probab=35.99 E-value=73 Score=24.71 Aligned_cols=17 Identities=12% Similarity=0.143 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHHh
Q 048010 42 LISALFFMGFFSIYIRH 58 (320)
Q Consensus 42 lv~~~~ll~~~~i~~r~ 58 (320)
++.+++++.+.++|++-
T Consensus 56 i~~v~i~~l~~flYLK~ 72 (81)
T PHA02650 56 IFSLIIVALFSFFVFKG 72 (81)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33334444444455543
No 185
>PF04423 Rad50_zn_hook: Rad50 zinc hook motif; InterPro: IPR007517 The Mre11 complex (Mre11 Rad50 Nbs1) is central to chromosomal maintenance and functions in homologous recombination, telomere maintenance and sister chromatid association. The Rad50 coiled-coil region contains a dimer interface at the apex of the coiled coils in which pairs of conserved Cys-X-X-Cys motifs form interlocking hooks that bind one Zn ion. This alignment includes the zinc hook motif and a short stretch of coiled-coil on either side.; GO: 0004518 nuclease activity, 0005524 ATP binding, 0008270 zinc ion binding, 0006281 DNA repair; PDB: 1L8D_B.
Probab=35.89 E-value=13 Score=26.20 Aligned_cols=12 Identities=33% Similarity=0.905 Sum_probs=6.3
Q ss_pred CCCccccccccC
Q 048010 149 TTCPVCRSNLAS 160 (320)
Q Consensus 149 ~~CP~CR~~l~~ 160 (320)
..||+|.+++..
T Consensus 21 ~~CPlC~r~l~~ 32 (54)
T PF04423_consen 21 GCCPLCGRPLDE 32 (54)
T ss_dssp EE-TTT--EE-H
T ss_pred CcCCCCCCCCCH
Confidence 389999998864
No 186
>COG4847 Uncharacterized protein conserved in archaea [Function unknown]
Probab=35.45 E-value=30 Score=27.81 Aligned_cols=33 Identities=18% Similarity=0.399 Sum_probs=27.4
Q ss_pred cccccccccccCCcceEEecCCCccccHHHHHHHH
Q 048010 111 LECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWL 145 (320)
Q Consensus 111 ~~C~ICl~~~~~~~~~r~lp~C~H~FH~~Ci~~Wl 145 (320)
..|.||-+.+..++.....+ .-..|.+|+..=.
T Consensus 7 wkC~VCg~~iieGqkFTF~~--kGsVH~eCl~~s~ 39 (103)
T COG4847 7 WKCYVCGGTIIEGQKFTFTK--KGSVHYECLAESK 39 (103)
T ss_pred eeEeeeCCEeeeccEEEEee--CCcchHHHHHHHH
Confidence 57999999999999988876 4457999988743
No 187
>PF00737 PsbH: Photosystem II 10 kDa phosphoprotein; InterPro: IPR001056 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight phosphoprotein PsbH found in PSII. The phosphorylation site of PsbH is located in the N terminus, where reversible phosphorylation is light-dependent and redox-controlled. PsbH is necessary for the photoprotection of PSII, being required for: (1) the rapid degradation of photodamaged D1 core protein to prevent further oxidative damage to the PSII core, and (2) the insertion of newly synthesised D1 protein into the thylakoid membrane []. PsbH may also regulate the transfer of electrons from D2 (Qa) to D1 (Qb) in the reaction core.; GO: 0042301 phosphate ion binding, 0015979 photosynthesis, 0050821 protein stabilization, 0009523 photosystem II, 0016020 membrane; PDB: 3PRR_H 2AXT_h 3BZ2_H 3BZ1_H 4FBY_W 3PRQ_H 3KZI_H 1S5L_h 3A0H_H 3ARC_H ....
Probab=34.40 E-value=1.4e+02 Score=21.33 Aligned_cols=9 Identities=0% Similarity=-0.060 Sum_probs=3.8
Q ss_pred CCCcchHHH
Q 048010 28 NMKFSPSLA 36 (320)
Q Consensus 28 ~~~~~~~~~ 36 (320)
..+|...-+
T Consensus 19 aPGWGTtpl 27 (52)
T PF00737_consen 19 APGWGTTPL 27 (52)
T ss_dssp BSTTTTHHH
T ss_pred CCCccchHH
Confidence 344544333
No 188
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=34.04 E-value=21 Score=22.66 Aligned_cols=19 Identities=32% Similarity=0.835 Sum_probs=11.5
Q ss_pred CCccccHHHHHHHHhcCCCCccccc
Q 048010 132 CDHVFHPECIDAWLESHTTCPVCRS 156 (320)
Q Consensus 132 C~H~FH~~Ci~~Wl~~~~~CP~CR~ 156 (320)
|||++-..- ....||+|.+
T Consensus 7 CGy~y~~~~------~~~~CP~Cg~ 25 (33)
T cd00350 7 CGYIYDGEE------APWVCPVCGA 25 (33)
T ss_pred CCCEECCCc------CCCcCcCCCC
Confidence 666554332 3457999965
No 189
>PF10577 UPF0560: Uncharacterised protein family UPF0560; InterPro: IPR018890 This family of proteins has no known function.
Probab=33.91 E-value=85 Score=34.24 Aligned_cols=24 Identities=25% Similarity=0.335 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 048010 35 LAIIIVVLISALFFMGFFSIYIRH 58 (320)
Q Consensus 35 ~~iiiiilv~~~~ll~~~~i~~r~ 58 (320)
++|+-++++++++||.++++|+|+
T Consensus 276 l~ILG~~~livl~lL~vLl~yCrr 299 (807)
T PF10577_consen 276 LAILGGTALIVLILLCVLLCYCRR 299 (807)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhc
Confidence 444444444444444444444443
No 190
>PF12877 DUF3827: Domain of unknown function (DUF3827); InterPro: IPR024606 The function of the proteins in this entry is not currently known, but one of the human proteins (Q9HCM3 from SWISSPROT) has been implicated in pilocytic astrocytomas [, , ]. In the majority of cases of pilocytic astrocytomas a tandem duplication produces an in-frame fusion of the gene encoding this protein and the BRAF oncogene. The resulting fusion protein has constitutive BRAF kinase activity and is capable of transforming cells.
Probab=33.84 E-value=37 Score=36.05 Aligned_cols=23 Identities=13% Similarity=0.158 Sum_probs=13.0
Q ss_pred CCCcchHHHHHHHHHHHHHHHHH
Q 048010 28 NMKFSPSLAIIIVVLISALFFMG 50 (320)
Q Consensus 28 ~~~~~~~~~iiiiilv~~~~ll~ 50 (320)
..+.|.++++++-+++++|++++
T Consensus 266 ~~NlWII~gVlvPv~vV~~Iiii 288 (684)
T PF12877_consen 266 PNNLWIIAGVLVPVLVVLLIIII 288 (684)
T ss_pred CCCeEEEehHhHHHHHHHHHHHH
Confidence 45677777776555554444333
No 191
>PF07010 Endomucin: Endomucin; InterPro: IPR010740 This family consists of several mammalian endomucin proteins. Endomucin is an early endothelial-specific antigen that is also expressed on putative hematopoietic progenitor cells.
Probab=33.43 E-value=1.3e+02 Score=27.96 Aligned_cols=34 Identities=15% Similarity=0.231 Sum_probs=17.6
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHhccCCC
Q 048010 30 KFSPSLAIIIVVLISALFFMGFFSIYIRHCSDSS 63 (320)
Q Consensus 30 ~~~~~~~iiiiilv~~~~ll~~~~i~~r~c~~~~ 63 (320)
.++.+++-++++||++.+++..+.-++|.|+...
T Consensus 185 S~S~vilpvvIaliVitl~vf~LvgLyr~C~k~d 218 (259)
T PF07010_consen 185 SYSSVILPVVIALIVITLSVFTLVGLYRMCWKTD 218 (259)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 4444444444444444444444445667777654
No 192
>PTZ00046 rifin; Provisional
Probab=32.81 E-value=54 Score=32.45 Aligned_cols=24 Identities=17% Similarity=0.339 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 048010 35 LAIIIVVLISALFFMGFFSIYIRH 58 (320)
Q Consensus 35 ~~iiiiilv~~~~ll~~~~i~~r~ 58 (320)
++.-++++|+++++|+++++.+|+
T Consensus 317 IiaSiiAIvVIVLIMvIIYLILRY 340 (358)
T PTZ00046 317 IIASIVAIVVIVLIMVIIYLILRY 340 (358)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333344444444455555555565
No 193
>TIGR01477 RIFIN variant surface antigen, rifin family. This model represents the rifin branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of rifin sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 20 bits.
Probab=32.54 E-value=56 Score=32.27 Aligned_cols=23 Identities=13% Similarity=0.293 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 048010 36 AIIIVVLISALFFMGFFSIYIRH 58 (320)
Q Consensus 36 ~iiiiilv~~~~ll~~~~i~~r~ 58 (320)
++-++++|+++++|+++++.+|+
T Consensus 313 iaSiIAIvvIVLIMvIIYLILRY 335 (353)
T TIGR01477 313 IASIIAILIIVLIMVIIYLILRY 335 (353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 33333444444455555555565
No 194
>PF07649 C1_3: C1-like domain; InterPro: IPR011424 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in IPR002219 from INTERPRO. C1 domains are protein kinase C-like zinc finger structures. Diacylglycerol (DAG) kinases (DGKs) have a two or three commonly conserved cysteine-rich C1 domains []. DGKs modulate the balance between the two signaling lipids, DAG and phosphatidic acid (PA), by phosphorylating DAG to yield PA []. The PKD (protein kinase D) family are novel DAG receptors. They have twin C1 domains, designated C1a and C1b, which bind DAG or phorbol esters. Individual C1 domains differ in ligand-binding activity and selectivity []. ; GO: 0047134 protein-disulfide reductase activity, 0055114 oxidation-reduction process; PDB: 1V5N_A.
Probab=32.23 E-value=40 Score=20.67 Aligned_cols=29 Identities=24% Similarity=0.599 Sum_probs=10.4
Q ss_pred ccccccccccCCcceEEecCCCccccHHHH
Q 048010 112 ECAVCLNEFEDDETLRLIPKCDHVFHPECI 141 (320)
Q Consensus 112 ~C~ICl~~~~~~~~~r~lp~C~H~FH~~Ci 141 (320)
.|.+|...... ...-.-..|.-.+|..|+
T Consensus 2 ~C~~C~~~~~~-~~~Y~C~~Cdf~lH~~Ca 30 (30)
T PF07649_consen 2 RCDACGKPIDG-GWFYRCSECDFDLHEECA 30 (30)
T ss_dssp --TTTS----S---EEE-TTT-----HHHH
T ss_pred cCCcCCCcCCC-CceEECccCCCccChhcC
Confidence 48888888776 333333459999999985
No 195
>PF05808 Podoplanin: Podoplanin; InterPro: IPR008783 This family consists of several mammalian podoplanin-like proteins which are thought to control specifically the unique shape of podocytes [].; GO: 0016021 integral to membrane; PDB: 3IET_X.
Probab=32.14 E-value=15 Score=32.23 Aligned_cols=34 Identities=24% Similarity=0.372 Sum_probs=0.0
Q ss_pred CCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 048010 27 SNMKFSPSLAIIIVVLISALFFMGFFSIYIRHCS 60 (320)
Q Consensus 27 ~~~~~~~~~~iiiiilv~~~~ll~~~~i~~r~c~ 60 (320)
+......++.||+++|+++-|+.+++++++|+..
T Consensus 124 ~GL~T~tLVGIIVGVLlaIG~igGIIivvvRKmS 157 (162)
T PF05808_consen 124 DGLSTVTLVGIIVGVLLAIGFIGGIIIVVVRKMS 157 (162)
T ss_dssp ----------------------------------
T ss_pred CCcceeeeeeehhhHHHHHHHHhheeeEEeehhc
Confidence 3455667888999999999999999999888753
No 196
>PF06667 PspB: Phage shock protein B; InterPro: IPR009554 This family consists of several bacterial phage shock protein B (PspB) sequences. The phage shock protein (psp) operon is induced in response to heat, ethanol, osmotic shock and infection by filamentous bacteriophages []. Expression of the operon requires the alternative sigma factor sigma54 and the transcriptional activator PspF. In addition, PspA plays a negative regulatory role, and the integral-membrane proteins PspB and PspC play a positive one [].; GO: 0006355 regulation of transcription, DNA-dependent, 0009271 phage shock
Probab=31.58 E-value=1.2e+02 Score=23.34 Aligned_cols=12 Identities=25% Similarity=0.412 Sum_probs=5.8
Q ss_pred cCCCCHHHHhhC
Q 048010 82 ARGLDREVIDTF 93 (320)
Q Consensus 82 ~~gl~~~~i~~l 93 (320)
..|++.+..+.+
T Consensus 33 ~~gLs~~d~~~L 44 (75)
T PF06667_consen 33 SQGLSEEDEQRL 44 (75)
T ss_pred CCCCCHHHHHHH
Confidence 445555544444
No 197
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=31.41 E-value=72 Score=35.99 Aligned_cols=50 Identities=18% Similarity=0.506 Sum_probs=35.0
Q ss_pred Cccccccccccc---CCcceEEecCCCccccHHHHHHHH-hcCCCCcccccccc
Q 048010 110 ALECAVCLNEFE---DDETLRLIPKCDHVFHPECIDAWL-ESHTTCPVCRSNLA 159 (320)
Q Consensus 110 ~~~C~ICl~~~~---~~~~~r~lp~C~H~FH~~Ci~~Wl-~~~~~CP~CR~~l~ 159 (320)
...|-||-+++. +++...-.-.|+-=.|..|.+-=- +.++.||-|+....
T Consensus 17 ~qiCqICGD~vg~~~~Ge~FVAC~eC~FPVCrpCYEYEr~eG~q~CPqCktrYk 70 (1079)
T PLN02638 17 GQVCQICGDNVGKTVDGEPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTKYK 70 (1079)
T ss_pred CceeeecccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchh
Confidence 458999999975 344433333477779999984322 35779999998876
No 198
>COG1622 CyoA Heme/copper-type cytochrome/quinol oxidases, subunit 2 [Energy production and conversion]
Probab=31.12 E-value=90 Score=29.25 Aligned_cols=34 Identities=6% Similarity=0.074 Sum_probs=14.2
Q ss_pred CCCcchHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 048010 28 NMKFSPSLAIIIVVLISALFFMGFFSIYIRHCSD 61 (320)
Q Consensus 28 ~~~~~~~~~iiiiilv~~~~ll~~~~i~~r~c~~ 61 (320)
....+..+..+++++++++.+++++.++..++++
T Consensus 28 ~~~~~~~~~~~~~~~~I~~~V~~~~~~~~~k~R~ 61 (247)
T COG1622 28 AEQRDLIILSTLLMLVIVLPVIVLLVYFAWKYRA 61 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 3344444444444444333334444344444443
No 199
>COG3905 Predicted transcriptional regulator [Transcription]
Probab=30.03 E-value=32 Score=26.91 Aligned_cols=26 Identities=27% Similarity=0.533 Sum_probs=20.8
Q ss_pred cccccCcHHHHHHHH--hhhccccccee
Q 048010 254 RFTLRLPVDVRKQIM--NRELNRSNSLV 279 (320)
Q Consensus 254 r~tlrLpe~v~~~~~--~~~l~r~~s~~ 279 (320)
-||+||++++.+++- ....+|++|.+
T Consensus 4 a~tirl~del~~rLd~lAe~~~rsrs~i 31 (83)
T COG3905 4 AFTIRLDDELKRRLDELAEATDRSRSYI 31 (83)
T ss_pred ceEEecCHHHHHHHHHHHHHhccChhhh
Confidence 489999999977654 67888888865
No 200
>CHL00038 psbL photosystem II protein L
Probab=29.96 E-value=1.4e+02 Score=19.78 Aligned_cols=19 Identities=16% Similarity=0.431 Sum_probs=8.7
Q ss_pred CCcchHHHHHHHHHHHHHH
Q 048010 29 MKFSPSLAIIIVVLISALF 47 (320)
Q Consensus 29 ~~~~~~~~iiiiilv~~~~ 47 (320)
...+..+..+++++++++|
T Consensus 14 NRTSLy~GLLlifvl~vlf 32 (38)
T CHL00038 14 NRTSLYWGLLLIFVLAVLF 32 (38)
T ss_pred hhhhHHHHHHHHHHHHHHH
Confidence 3444444555444444443
No 201
>PF07423 DUF1510: Protein of unknown function (DUF1510); InterPro: IPR009988 This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown.
Probab=29.62 E-value=42 Score=30.92 Aligned_cols=17 Identities=18% Similarity=0.149 Sum_probs=7.5
Q ss_pred cchHHHHHHHHHHHHHH
Q 048010 31 FSPSLAIIIVVLISALF 47 (320)
Q Consensus 31 ~~~~~~iiiiilv~~~~ 47 (320)
.+.++-|+|+|++++++
T Consensus 12 ~N~iLNiaI~IV~lLIi 28 (217)
T PF07423_consen 12 TNKILNIAIGIVSLLII 28 (217)
T ss_pred hhhhHHHHHHHHHHHHH
Confidence 34444455544443333
No 202
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=29.42 E-value=10 Score=35.83 Aligned_cols=48 Identities=23% Similarity=0.540 Sum_probs=36.2
Q ss_pred cccccccccccCC--cce-EEecC-------CCccccHHHHHHHHhcC-CCCccccccc
Q 048010 111 LECAVCLNEFEDD--ETL-RLIPK-------CDHVFHPECIDAWLESH-TTCPVCRSNL 158 (320)
Q Consensus 111 ~~C~ICl~~~~~~--~~~-r~lp~-------C~H~FH~~Ci~~Wl~~~-~~CP~CR~~l 158 (320)
..|.||...+... ..+ +++.. |+|..+..|++.-+... ..||.|+...
T Consensus 208 ~~c~ic~~~~~~n~~~~~p~vl~~~~~~~~~c~htlc~~c~~~~l~~~~~~cp~~~~~~ 266 (296)
T KOG4185|consen 208 KLCEICERIYSENDEKLAPLVLSLSRLKEKIEGHTLCKECIDTILLQAGIKCPFCTWSH 266 (296)
T ss_pred HHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHhcchHHHHHHhhhcCCccccee
Confidence 5699999999843 222 33323 99999999999998544 5899998754
No 203
>KOG4323 consensus Polycomb-like PHD Zn-finger protein [General function prediction only]
Probab=29.21 E-value=37 Score=34.74 Aligned_cols=50 Identities=22% Similarity=0.513 Sum_probs=33.8
Q ss_pred CCcccccccc-cccCCcceEEecCCCccccHHHHHHHHh----c----CCCCccccccc
Q 048010 109 GALECAVCLN-EFEDDETLRLIPKCDHVFHPECIDAWLE----S----HTTCPVCRSNL 158 (320)
Q Consensus 109 ~~~~C~ICl~-~~~~~~~~r~lp~C~H~FH~~Ci~~Wl~----~----~~~CP~CR~~l 158 (320)
...+|.+|.. ..-..+.+....+|.-.||..|-....+ . ...|-+|....
T Consensus 167 ~n~qc~vC~~g~~~~~NrmlqC~~C~~~fHq~Chqp~i~~~l~~D~~~~w~C~~C~~~~ 225 (464)
T KOG4323|consen 167 VNLQCSVCYCGGPGAGNRMLQCDKCRQWYHQACHQPLIKDELAGDPFYEWFCDVCNRGP 225 (464)
T ss_pred ccceeeeeecCCcCccceeeeecccccHHHHHhccCCCCHhhccCccceEeehhhccch
Confidence 4456999984 4444455656667999999999766542 1 23699996543
No 204
>PF03229 Alpha_GJ: Alphavirus glycoprotein J; InterPro: IPR004913 The exact function of the herpesvirus glycoprotein J is unknown, but it appears to play a role in the inhibition of apotosis of the host cell [].; GO: 0019050 suppression by virus of host apoptosis
Probab=29.14 E-value=89 Score=26.08 Aligned_cols=39 Identities=21% Similarity=0.259 Sum_probs=20.9
Q ss_pred CCCCCCcchHHHHHHHHHHHHHH-HHHHHHHHHHhccCCC
Q 048010 25 PYSNMKFSPSLAIIIVVLISALF-FMGFFSIYIRHCSDSS 63 (320)
Q Consensus 25 ~~~~~~~~~~~~iiiiilv~~~~-ll~~~~i~~r~c~~~~ 63 (320)
+|.......++-.+|+-|+.+.+ .|+.+.++.|.|+++.
T Consensus 76 p~ps~p~d~aLp~VIGGLcaL~LaamGA~~LLrR~cRr~a 115 (126)
T PF03229_consen 76 PGPSPPVDFALPLVIGGLCALTLAAMGAGALLRRCCRRAA 115 (126)
T ss_pred CCCCCCcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34344444445555555555444 6666666666665543
No 205
>PHA03163 hypothetical protein; Provisional
Probab=29.11 E-value=2.1e+02 Score=22.72 Aligned_cols=7 Identities=57% Similarity=0.643 Sum_probs=2.8
Q ss_pred cchHHHH
Q 048010 31 FSPSLAI 37 (320)
Q Consensus 31 ~~~~~~i 37 (320)
|+.++++
T Consensus 57 FSSIWal 63 (92)
T PHA03163 57 FSSIWAI 63 (92)
T ss_pred HHHHHHH
Confidence 4443333
No 206
>CHL00118 atpG ATP synthase CF0 B' subunit; Validated
Probab=28.68 E-value=1.1e+02 Score=26.19 Aligned_cols=13 Identities=23% Similarity=0.235 Sum_probs=7.9
Q ss_pred Cchhhhhhhhhhc
Q 048010 1 MLLVAHALPLSLA 13 (320)
Q Consensus 1 ~l~~~~~~~~~~~ 13 (320)
|+.|++.+..+..
T Consensus 1 ~~~~~~~~~~~~~ 13 (156)
T CHL00118 1 MIISILILILAEE 13 (156)
T ss_pred ChHHHHHHHHhhc
Confidence 5666776665443
No 207
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=28.68 E-value=7 Score=37.12 Aligned_cols=46 Identities=17% Similarity=0.199 Sum_probs=19.8
Q ss_pred cccccccccccCCcceEEec-CCCccccHHHHHHHHhcCCCCccccc
Q 048010 111 LECAVCLNEFEDDETLRLIP-KCDHVFHPECIDAWLESHTTCPVCRS 156 (320)
Q Consensus 111 ~~C~ICl~~~~~~~~~r~lp-~C~H~FH~~Ci~~Wl~~~~~CP~CR~ 156 (320)
..|+||-..-.-......-. .-.|.+|.-|-..|-..+..||.|-.
T Consensus 173 g~CPvCGs~P~~s~l~~~~~~G~R~L~Cs~C~t~W~~~R~~Cp~Cg~ 219 (290)
T PF04216_consen 173 GYCPVCGSPPVLSVLRGGEREGKRYLHCSLCGTEWRFVRIKCPYCGN 219 (290)
T ss_dssp SS-TTT---EEEEEEE------EEEEEETTT--EEE--TTS-TTT--
T ss_pred CcCCCCCCcCceEEEecCCCCccEEEEcCCCCCeeeecCCCCcCCCC
Confidence 57999988743221110000 12356677788899877889999944
No 208
>PF01299 Lamp: Lysosome-associated membrane glycoprotein (Lamp); InterPro: IPR002000 Lysosome-associated membrane glycoproteins (lamp) [] are integral membrane proteins, specific to lysosomes, and whose exact biological function is not yet clear. Structurally, the lamp proteins consist of two internally homologous lysosome-luminal domains separated by a proline-rich hinge region; at the C-terminal extremity there is a transmembrane region (TM) followed by a very short cytoplasmic tail (C). In each of the duplicated domains, there are two conserved disulphide bonds. This structure is schematically represented in the figure below. +-----+ +-----+ +-----+ +-----+ | | | | | | | | xCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxxxCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxx +--------------------------++Hinge++--------------------------++TM++C+ In mammals, there are two closely related types of lamp: lamp-1 and lamp-2, which form major components of the lysosome membrane. In chicken lamp-1 is known as LEP100. Also included in this entry is the macrophage protein CD68 (or macrosialin) [] is a heavily glycosylated integral membrane protein whose structure consists of a mucin-like domain followed by a proline-rich hinge; a single lamp-like domain; a transmembrane region and a short cytoplasmic tail. Similar to CD68, mammalian lamp-3, which is expressed in lymphoid organs, dendritic cells and in lung, contains all the C-terminal regions but lacks the N-terminal lamp-like region []. In a lamp-family protein from nematodes [] only the part C-terminal to the hinge is conserved. ; GO: 0016020 membrane
Probab=28.63 E-value=56 Score=31.19 Aligned_cols=23 Identities=13% Similarity=0.241 Sum_probs=12.9
Q ss_pred chHHHHHHHHHHHHHHHHHHHHH
Q 048010 32 SPSLAIIIVVLISALFFMGFFSI 54 (320)
Q Consensus 32 ~~~~~iiiiilv~~~~ll~~~~i 54 (320)
+.++-|++++.++++++|+++.+
T Consensus 270 ~~~vPIaVG~~La~lvlivLiaY 292 (306)
T PF01299_consen 270 SDLVPIAVGAALAGLVLIVLIAY 292 (306)
T ss_pred cchHHHHHHHHHHHHHHHHHHhh
Confidence 55556666666665555554433
No 209
>KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics]
Probab=28.16 E-value=23 Score=41.07 Aligned_cols=50 Identities=30% Similarity=0.516 Sum_probs=40.0
Q ss_pred CCCcccccccccccCCcceEEecCCCccccHHHHHHHHhc----CCCCccccccc
Q 048010 108 KGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLES----HTTCPVCRSNL 158 (320)
Q Consensus 108 ~~~~~C~ICl~~~~~~~~~r~lp~C~H~FH~~Ci~~Wl~~----~~~CP~CR~~l 158 (320)
.....|-||+....+.+.+...- |.-.||..|++.-+.. .-.||-||..-
T Consensus 1106 ~~~~~c~~cr~k~~~~~m~lc~~-c~~~~h~~C~rp~~~~~~~~dW~C~~c~~e~ 1159 (1404)
T KOG1245|consen 1106 AVNALCKVCRRKKQDEKMLLCDE-CLSGFHLFCLRPALSSVPPGDWMCPSCRKEH 1159 (1404)
T ss_pred cchhhhhhhhhcccchhhhhhHh-hhhhHHHHhhhhhhccCCcCCccCCccchhh
Confidence 34567999999988866665554 9999999999998864 44899998865
No 210
>PF15145 DUF4577: Domain of unknown function (DUF4577)
Probab=28.10 E-value=46 Score=27.55 Aligned_cols=23 Identities=26% Similarity=0.391 Sum_probs=14.2
Q ss_pred CcccccCCCCHHHHhhCCCcccc
Q 048010 77 SRRGAARGLDREVIDTFPTFVYS 99 (320)
Q Consensus 77 ~~r~~~~gl~~~~i~~lp~~~~~ 99 (320)
++|-...|-+-+.++++..+...
T Consensus 96 SrRL~aEgKdIdeLKKiN~mIvk 118 (128)
T PF15145_consen 96 SRRLTAEGKDIDELKKINSMIVK 118 (128)
T ss_pred HHHHHhccCCHHHHHHHHHHHHH
Confidence 45556677777777766554443
No 211
>KOG1729 consensus FYVE finger containing protein [General function prediction only]
Probab=28.07 E-value=11 Score=36.09 Aligned_cols=37 Identities=27% Similarity=0.567 Sum_probs=24.5
Q ss_pred cccccccccccCCcceEEecCCCccccHHHHHHHHhcC
Q 048010 111 LECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESH 148 (320)
Q Consensus 111 ~~C~ICl~~~~~~~~~r~lp~C~H~FH~~Ci~~Wl~~~ 148 (320)
.+|.+|+++|..+......- |.-+||..|+-.|+...
T Consensus 215 rvC~~CF~el~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 251 (288)
T KOG1729|consen 215 RVCDICFEELEKGARGDRED-SLPVFHGKCYPNWLTTG 251 (288)
T ss_pred eecHHHHHHHhcccccchhh-ccccccccccccccccc
Confidence 37888888887544333333 55588888888887543
No 212
>PF08374 Protocadherin: Protocadherin; InterPro: IPR013585 The structure of protocadherins is similar to that of classic cadherins (IPR002126 from INTERPRO), but they also have some unique features associated with the cytoplasmic domains. They are expressed in a variety of organisms and are found in high concentrations in the brain where they seem to be localised mainly at cell-cell contact sites. Their expression seems to be developmentally regulated [].
Probab=27.98 E-value=34 Score=31.50 Aligned_cols=32 Identities=22% Similarity=0.397 Sum_probs=15.9
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 048010 29 MKFSPSLAIIIVVLISALFFMGFFSIYIRHCSDS 62 (320)
Q Consensus 29 ~~~~~~~~iiiiilv~~~~ll~~~~i~~r~c~~~ 62 (320)
..++..++||.+++.++++| |+.+++|+|+..
T Consensus 35 d~~~I~iaiVAG~~tVILVI--~i~v~vR~CRq~ 66 (221)
T PF08374_consen 35 DYVKIMIAIVAGIMTVILVI--FIVVLVRYCRQS 66 (221)
T ss_pred cceeeeeeeecchhhhHHHH--HHHHHHHHHhhc
Confidence 34555555555544443333 334556777743
No 213
>PF10497 zf-4CXXC_R1: Zinc-finger domain of monoamine-oxidase A repressor R1; InterPro: IPR018866 R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression. This domain is a four-CXXC zinc finger putative DNA-binding domain found at the C-terminal end of R1. The domain carries 12 cysteines of which four pairs are of the CXXC type [].
Probab=27.75 E-value=67 Score=26.05 Aligned_cols=46 Identities=24% Similarity=0.494 Sum_probs=28.0
Q ss_pred cccccccccccCCcceE----EecCC---CccccHHHHHHHHhc---------CCCCccccc
Q 048010 111 LECAVCLNEFEDDETLR----LIPKC---DHVFHPECIDAWLES---------HTTCPVCRS 156 (320)
Q Consensus 111 ~~C~ICl~~~~~~~~~r----~lp~C---~H~FH~~Ci~~Wl~~---------~~~CP~CR~ 156 (320)
..|..|...-.+....- ..+.| .=.|+..||..++.. +-.||.||.
T Consensus 8 ~~CHqCrqKt~~~~~~C~~~~~~~~C~~~~~~fC~~CL~~ryge~~~ev~~~~~W~CP~Crg 69 (105)
T PF10497_consen 8 KTCHQCRQKTLDFKTICTGHWKNSSCRGCRGKFCGGCLRNRYGENVEEVLEDPNWKCPKCRG 69 (105)
T ss_pred CCchhhcCCCCCCceEcCCCCCCCCCccCcceehHhHHHHHHhhhHHHHhcCCceECCCCCC
Confidence 45777766433221110 11346 677999999988732 346999987
No 214
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=27.69 E-value=36 Score=32.89 Aligned_cols=48 Identities=21% Similarity=0.497 Sum_probs=38.6
Q ss_pred CCcccccccccccCCcceEEecCCCccccHHHHHHHHhcCCCCcccccccc
Q 048010 109 GALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLA 159 (320)
Q Consensus 109 ~~~~C~ICl~~~~~~~~~r~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~ 159 (320)
....|-||...+...... - .|.|.|+..|...|......||.|+....
T Consensus 104 ~~~~~~~~~g~l~vpt~~--q-g~w~qf~~~~p~~~~~~~~~~~d~~~~~~ 151 (324)
T KOG0824|consen 104 DHDICYICYGKLTVPTRI--Q-GCWHQFCYVCPKSNFAMGNDCPDCRGKIS 151 (324)
T ss_pred CccceeeeeeeEEecccc--c-CceeeeeecCCchhhhhhhccchhhcCcC
Confidence 446799998887765433 1 49999999999999999999999987553
No 215
>PF04689 S1FA: DNA binding protein S1FA; InterPro: IPR006779 S1FA is an unusual small plant peptide of only 70 amino acids with a basic domain which contains a nuclear localization signal and a putative DNA binding helix. S1FA is highly conserved between dicotyledonous and monocotyledonous plants and may be a DNA-binding protein that specifically recognises the negative promoter element S1F [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=27.68 E-value=33 Score=25.56 Aligned_cols=23 Identities=26% Similarity=0.413 Sum_probs=13.2
Q ss_pred CCCcchHHHHHHHHHHHHHHHHH
Q 048010 28 NMKFSPSLAIIIVVLISALFFMG 50 (320)
Q Consensus 28 ~~~~~~~~~iiiiilv~~~~ll~ 50 (320)
..+++|-++++|++.-++++|++
T Consensus 7 ~KGlnPGlIVLlvV~g~ll~flv 29 (69)
T PF04689_consen 7 AKGLNPGLIVLLVVAGLLLVFLV 29 (69)
T ss_pred ccCCCCCeEEeehHHHHHHHHHH
Confidence 46777776666655544444433
No 216
>PF05568 ASFV_J13L: African swine fever virus J13L protein; InterPro: IPR008385 This family consists of several African swine fever virus (ASFV) j13L proteins [, , ].
Probab=27.60 E-value=96 Score=26.97 Aligned_cols=23 Identities=9% Similarity=0.280 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Q 048010 37 IIIVVLISALFFMGFFSIYIRHC 59 (320)
Q Consensus 37 iiiiilv~~~~ll~~~~i~~r~c 59 (320)
|++.|+|.+++|+++++++-++.
T Consensus 34 ILiaIvVliiiiivli~lcssRK 56 (189)
T PF05568_consen 34 ILIAIVVLIIIIIVLIYLCSSRK 56 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhh
Confidence 33444444444555555555543
No 217
>KOG2071 consensus mRNA cleavage and polyadenylation factor I/II complex, subunit Pcf11 [RNA processing and modification]
Probab=27.27 E-value=30 Score=36.27 Aligned_cols=35 Identities=23% Similarity=0.644 Sum_probs=24.1
Q ss_pred CCCcccccccccccC-----------CcceEEecCCCccccHHHHHHH
Q 048010 108 KGALECAVCLNEFED-----------DETLRLIPKCDHVFHPECIDAW 144 (320)
Q Consensus 108 ~~~~~C~ICl~~~~~-----------~~~~r~lp~C~H~FH~~Ci~~W 144 (320)
+....|+||.+.|+. .+.+... =|-+||..|+..-
T Consensus 511 e~~~~C~IC~EkFe~v~d~e~~~Wm~kdaV~le--~G~ifH~~Cl~e~ 556 (579)
T KOG2071|consen 511 ERQASCPICQEKFEVVFDQEEDLWMYKDAVYLE--FGRIFHSKCLSEK 556 (579)
T ss_pred ccccCCcccccccceeecchhhheeecceeeec--cCceeeccccchH
Confidence 345679999999973 1122221 4889999998774
No 218
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=26.99 E-value=59 Score=32.59 Aligned_cols=12 Identities=8% Similarity=-0.009 Sum_probs=4.8
Q ss_pred hhhhhhhhhccC
Q 048010 4 VAHALPLSLAQR 15 (320)
Q Consensus 4 ~~~~~~~~~~~~ 15 (320)
++++...+.+..
T Consensus 9 ~ll~agi~~g~~ 20 (400)
T COG3071 9 VLLLAGIGVGLA 20 (400)
T ss_pred HHHHHHHHHHHH
Confidence 333344444433
No 219
>PF11752 DUF3309: Protein of unknown function (DUF3309); InterPro: IPR021738 This family is conserved in bacteria but its function is not known.
Probab=26.91 E-value=1.2e+02 Score=21.44 Aligned_cols=14 Identities=36% Similarity=0.169 Sum_probs=6.2
Q ss_pred chhhhhhhhhhccC
Q 048010 2 LLVAHALPLSLAQR 15 (320)
Q Consensus 2 l~~~~~~~~~~~~~ 15 (320)
|+.++.+....+-.
T Consensus 4 LlIiLil~LigalP 17 (49)
T PF11752_consen 4 LLIILILLLIGALP 17 (49)
T ss_pred eHHHHHHHHHhcCC
Confidence 44444444444433
No 220
>PF13832 zf-HC5HC2H_2: PHD-zinc-finger like domain
Probab=26.69 E-value=34 Score=27.24 Aligned_cols=34 Identities=26% Similarity=0.687 Sum_probs=22.5
Q ss_pred CCcccccccccccCCcceEE-ecCCCccccHHHHHHH
Q 048010 109 GALECAVCLNEFEDDETLRL-IPKCDHVFHPECIDAW 144 (320)
Q Consensus 109 ~~~~C~ICl~~~~~~~~~r~-lp~C~H~FH~~Ci~~W 144 (320)
....|.||... .|..++- -+.|...||..|....
T Consensus 54 ~~~~C~iC~~~--~G~~i~C~~~~C~~~fH~~CA~~~ 88 (110)
T PF13832_consen 54 FKLKCSICGKS--GGACIKCSHPGCSTAFHPTCARKA 88 (110)
T ss_pred cCCcCcCCCCC--CceeEEcCCCCCCcCCCHHHHHHC
Confidence 34689999998 3333321 1138889999997653
No 221
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=26.64 E-value=25 Score=24.68 Aligned_cols=36 Identities=28% Similarity=0.748 Sum_probs=20.7
Q ss_pred cccccccccccCCcceEEecCCCccccHHHHHHHHh--cCCCCcccccc
Q 048010 111 LECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLE--SHTTCPVCRSN 157 (320)
Q Consensus 111 ~~C~ICl~~~~~~~~~r~lp~C~H~FH~~Ci~~Wl~--~~~~CP~CR~~ 157 (320)
..|+.|-++|... .+ +.|+ .+.-.. ....||+|...
T Consensus 3 f~CP~C~~~~~~~-~L-----~~H~-----~~~H~~~~~~v~CPiC~~~ 40 (54)
T PF05605_consen 3 FTCPYCGKGFSES-SL-----VEHC-----EDEHRSESKNVVCPICSSR 40 (54)
T ss_pred cCCCCCCCccCHH-HH-----HHHH-----HhHCcCCCCCccCCCchhh
Confidence 5799999965542 22 3443 333221 23579999753
No 222
>PRK14584 hmsS hemin storage system protein; Provisional
Probab=25.95 E-value=2.1e+02 Score=24.92 Aligned_cols=22 Identities=5% Similarity=0.203 Sum_probs=11.1
Q ss_pred CcchHHHHHHHHHHHHHHHHHH
Q 048010 30 KFSPSLAIIIVVLISALFFMGF 51 (320)
Q Consensus 30 ~~~~~~~iiiiilv~~~~ll~~ 51 (320)
.++.....++++++.++++++.
T Consensus 59 ~~~tl~~yl~ial~nAvlLI~W 80 (153)
T PRK14584 59 GLTTIALYLAIAAFNAVLLIIW 80 (153)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH
Confidence 4454444555555555554444
No 223
>PF05393 Hum_adeno_E3A: Human adenovirus early E3A glycoprotein; InterPro: IPR008652 This family consists of several early glycoproteins (E3A), from human adenovirus type 2.; GO: 0016021 integral to membrane
Probab=25.71 E-value=69 Score=25.44 Aligned_cols=8 Identities=13% Similarity=0.538 Sum_probs=4.1
Q ss_pred CCCCCCCc
Q 048010 24 DPYSNMKF 31 (320)
Q Consensus 24 ~~~~~~~~ 31 (320)
+.|.+.+.
T Consensus 28 n~~~~Lgm 35 (94)
T PF05393_consen 28 NNWPNLGM 35 (94)
T ss_pred CCCCccch
Confidence 45555554
No 224
>PF14311 DUF4379: Domain of unknown function (DUF4379)
Probab=24.89 E-value=46 Score=23.37 Aligned_cols=23 Identities=26% Similarity=0.768 Sum_probs=13.3
Q ss_pred CCCccccHHHHHHHHhcCCCCccc
Q 048010 131 KCDHVFHPECIDAWLESHTTCPVC 154 (320)
Q Consensus 131 ~C~H~FH~~Ci~~Wl~~~~~CP~C 154 (320)
.|||.|... |..-......||.|
T Consensus 33 ~Cgh~w~~~-v~~R~~~~~~CP~C 55 (55)
T PF14311_consen 33 KCGHEWKAS-VNDRTRRGKGCPYC 55 (55)
T ss_pred CCCCeeEcc-HhhhccCCCCCCCC
Confidence 467766433 33333456779988
No 225
>KOG2231 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=24.82 E-value=48 Score=35.45 Aligned_cols=45 Identities=24% Similarity=0.538 Sum_probs=32.4
Q ss_pred ccccccccccCCcceEEecCCCc-cccHHHHHHHH--hc----CCCCccccccccC
Q 048010 112 ECAVCLNEFEDDETLRLIPKCDH-VFHPECIDAWL--ES----HTTCPVCRSNLAS 160 (320)
Q Consensus 112 ~C~ICl~~~~~~~~~r~lp~C~H-~FH~~Ci~~Wl--~~----~~~CP~CR~~l~~ 160 (320)
.|+||-....- .....|+| ..+..|..... .. +..||+||..+..
T Consensus 2 ~c~ic~~s~~~----~~~~s~~h~~v~~~~~~R~~~~~~~~~~~~~~~vcr~~~~~ 53 (669)
T KOG2231|consen 2 SCAICAFSPDF----VGRGSCGHNEVCATCVVRLRFELNNRKCSNECPVCRREVET 53 (669)
T ss_pred CcceeecCccc----cccccccccccchhhhhhhhhhcccccccccCcccccceee
Confidence 49999877553 33447999 88999987764 23 4578999997653
No 226
>PRK09458 pspB phage shock protein B; Provisional
Probab=23.99 E-value=1.9e+02 Score=22.30 Aligned_cols=15 Identities=20% Similarity=0.412 Sum_probs=8.4
Q ss_pred ccCCCCHHHHhhCCC
Q 048010 81 AARGLDREVIDTFPT 95 (320)
Q Consensus 81 ~~~gl~~~~i~~lp~ 95 (320)
...|++.+..+.+..
T Consensus 32 ~~~~Ls~~d~~~L~~ 46 (75)
T PRK09458 32 GSQGLSQEEQQRLAQ 46 (75)
T ss_pred CCCCCCHHHHHHHHH
Confidence 445666666555443
No 227
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=23.75 E-value=1.2e+02 Score=34.31 Aligned_cols=52 Identities=23% Similarity=0.487 Sum_probs=36.3
Q ss_pred CCccccccccccc---CCcceEEecCCCccccHHHHHHHH-hcCCCCccccccccC
Q 048010 109 GALECAVCLNEFE---DDETLRLIPKCDHVFHPECIDAWL-ESHTTCPVCRSNLAS 160 (320)
Q Consensus 109 ~~~~C~ICl~~~~---~~~~~r~lp~C~H~FH~~Ci~~Wl-~~~~~CP~CR~~l~~ 160 (320)
+...|.||-++.. +++...-.-.|+--.|..|.+-=. +.++.||-|+.....
T Consensus 14 ~~~~c~iCGd~vg~~~~Ge~FVAC~eC~fpvCr~cyeye~~~g~~~cp~c~t~y~~ 69 (1044)
T PLN02915 14 DAKTCRVCGDEVGVKEDGQPFVACHVCGFPVCKPCYEYERSEGNQCCPQCNTRYKR 69 (1044)
T ss_pred CcchhhccccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchhh
Confidence 4567999999975 344333333477779999984333 346789999998863
No 228
>PHA03240 envelope glycoprotein M; Provisional
Probab=23.46 E-value=66 Score=29.76 Aligned_cols=9 Identities=44% Similarity=0.231 Sum_probs=3.3
Q ss_pred cchHHHHHH
Q 048010 31 FSPSLAIII 39 (320)
Q Consensus 31 ~~~~~~iii 39 (320)
.|.+++||+
T Consensus 214 ~WIiilIIi 222 (258)
T PHA03240 214 AWIFIAIII 222 (258)
T ss_pred hHHHHHHHH
Confidence 333333333
No 229
>PHA03030 hypothetical protein; Provisional
Probab=23.43 E-value=68 Score=26.16 Aligned_cols=17 Identities=29% Similarity=0.507 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHhccCCC
Q 048010 47 FFMGFFSIYIRHCSDSS 63 (320)
Q Consensus 47 ~ll~~~~i~~r~c~~~~ 63 (320)
|+++|+++|+|...+..
T Consensus 12 fifl~iffYI~~IkRDn 28 (122)
T PHA03030 12 FIFLFIFFYIRIIKRDN 28 (122)
T ss_pred HHHHHHHHHheeeeccc
Confidence 34445556666554433
No 230
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=23.42 E-value=65 Score=30.42 Aligned_cols=33 Identities=21% Similarity=0.285 Sum_probs=26.5
Q ss_pred CcccccccccccCCcceEEecCCCccccHHHHHHHHh
Q 048010 110 ALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLE 146 (320)
Q Consensus 110 ~~~C~ICl~~~~~~~~~r~lp~C~H~FH~~Ci~~Wl~ 146 (320)
-+-|..||..+.++.. .| =||+|+.+||-+++.
T Consensus 43 FdcCsLtLqPc~dPvi---t~-~GylfdrEaILe~il 75 (303)
T KOG3039|consen 43 FDCCSLTLQPCRDPVI---TP-DGYLFDREAILEYIL 75 (303)
T ss_pred cceeeeecccccCCcc---CC-CCeeeeHHHHHHHHH
Confidence 3569999999988643 33 899999999999874
No 231
>PF13771 zf-HC5HC2H: PHD-like zinc-binding domain
Probab=23.42 E-value=40 Score=25.73 Aligned_cols=33 Identities=24% Similarity=0.676 Sum_probs=22.2
Q ss_pred CCcccccccccccCCcceE-EecCCCccccHHHHHH
Q 048010 109 GALECAVCLNEFEDDETLR-LIPKCDHVFHPECIDA 143 (320)
Q Consensus 109 ~~~~C~ICl~~~~~~~~~r-~lp~C~H~FH~~Ci~~ 143 (320)
....|.+|... .|..+. ..+.|.-.||..|...
T Consensus 35 ~~~~C~~C~~~--~Ga~i~C~~~~C~~~fH~~CA~~ 68 (90)
T PF13771_consen 35 RKLKCSICKKK--GGACIGCSHPGCSRSFHVPCARK 68 (90)
T ss_pred hCCCCcCCCCC--CCeEEEEeCCCCCcEEChHHHcc
Confidence 34679999976 233221 2336999999999654
No 232
>smart00647 IBR In Between Ring fingers. the domains occurs between pairs og RING fingers
Probab=23.39 E-value=24 Score=24.85 Aligned_cols=21 Identities=29% Similarity=0.564 Sum_probs=15.9
Q ss_pred cceEEecCCCccccHHHHHHH
Q 048010 124 ETLRLIPKCDHVFHPECIDAW 144 (320)
Q Consensus 124 ~~~r~lp~C~H~FH~~Ci~~W 144 (320)
.....-+.|+|.|+..|...|
T Consensus 38 ~~~v~C~~C~~~fC~~C~~~~ 58 (64)
T smart00647 38 CNRVTCPKCGFSFCFRCKVPW 58 (64)
T ss_pred CCeeECCCCCCeECCCCCCcC
Confidence 334455469999999998888
No 233
>PF05393 Hum_adeno_E3A: Human adenovirus early E3A glycoprotein; InterPro: IPR008652 This family consists of several early glycoproteins (E3A), from human adenovirus type 2.; GO: 0016021 integral to membrane
Probab=23.26 E-value=2.6e+02 Score=22.28 Aligned_cols=11 Identities=9% Similarity=-0.100 Sum_probs=5.2
Q ss_pred CCCCCcchHHH
Q 048010 26 YSNMKFSPSLA 36 (320)
Q Consensus 26 ~~~~~~~~~~~ 36 (320)
+.+..-+.-|.
T Consensus 26 ~~n~~~~Lgm~ 36 (94)
T PF05393_consen 26 FVNNWPNLGMW 36 (94)
T ss_pred ecCCCCccchh
Confidence 44554444443
No 234
>PF07282 OrfB_Zn_ribbon: Putative transposase DNA-binding domain; InterPro: IPR010095 This entry represents a region of a sequence similarity between a family of putative transposases of Thermoanaerobacter tengcongensis, smaller related proteins from Bacillus anthracis, putative transposes described by IPR001959 from INTERPRO, and other proteins. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=23.19 E-value=61 Score=23.54 Aligned_cols=34 Identities=15% Similarity=0.328 Sum_probs=23.6
Q ss_pred CcccccccccccC--CcceEEecCCCccccHHHHHH
Q 048010 110 ALECAVCLNEFED--DETLRLIPKCDHVFHPECIDA 143 (320)
Q Consensus 110 ~~~C~ICl~~~~~--~~~~r~lp~C~H~FH~~Ci~~ 143 (320)
...|+.|-..... .......+.||+.+|.+-.-.
T Consensus 28 Sq~C~~CG~~~~~~~~~r~~~C~~Cg~~~~rD~naA 63 (69)
T PF07282_consen 28 SQTCPRCGHRNKKRRSGRVFTCPNCGFEMDRDVNAA 63 (69)
T ss_pred ccCccCcccccccccccceEEcCCCCCEECcHHHHH
Confidence 3579999888777 445556666888888775443
No 235
>PF05767 Pox_A14: Poxvirus virion envelope protein A14; InterPro: IPR008785 This family consists of several Poxvirus virion envelope protein A14-like sequences. A14 is a component of the virion membrane and has been found to be an H1 phosphatase substrate in vivo and in vitro. A14 is hyperphosphorylated on serine residues in the absence of H1 expression [].; GO: 0019031 viral envelope
Probab=22.85 E-value=1.7e+02 Score=23.29 Aligned_cols=23 Identities=26% Similarity=0.382 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhccC
Q 048010 39 IVVLISALFFMGFFSIYIRHCSD 61 (320)
Q Consensus 39 iiilv~~~~ll~~~~i~~r~c~~ 61 (320)
+++-+++++-+.++..|-|+|+.
T Consensus 52 FI~giil~lG~~i~s~ygr~C~~ 74 (92)
T PF05767_consen 52 FILGIILTLGIVIFSMYGRYCRP 74 (92)
T ss_pred HHHHHHHHHHHHHHHHHhhhcCC
Confidence 33333444455667778899964
No 236
>COG1592 Rubrerythrin [Energy production and conversion]
Probab=22.44 E-value=42 Score=29.65 Aligned_cols=23 Identities=26% Similarity=0.720 Sum_probs=12.9
Q ss_pred EecCCCccccHHHHHHHHhcCCCCcccccc
Q 048010 128 LIPKCDHVFHPECIDAWLESHTTCPVCRSN 157 (320)
Q Consensus 128 ~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~ 157 (320)
+.+.|||++ .+ ..-..||+|-++
T Consensus 136 vC~vCGy~~----~g---e~P~~CPiCga~ 158 (166)
T COG1592 136 VCPVCGYTH----EG---EAPEVCPICGAP 158 (166)
T ss_pred EcCCCCCcc----cC---CCCCcCCCCCCh
Confidence 334577763 11 234578988653
No 237
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=22.30 E-value=47 Score=32.25 Aligned_cols=47 Identities=15% Similarity=0.299 Sum_probs=28.9
Q ss_pred CCcccccccccccCCcceEEec--CCCccccHHHHHHHHhcCCCCccccc
Q 048010 109 GALECAVCLNEFEDDETLRLIP--KCDHVFHPECIDAWLESHTTCPVCRS 156 (320)
Q Consensus 109 ~~~~C~ICl~~~~~~~~~r~lp--~C~H~FH~~Ci~~Wl~~~~~CP~CR~ 156 (320)
....|+||-..-.... ++.-. .=.|.+|.-|-..|-..+..||.|-.
T Consensus 186 ~~~~CPvCGs~P~~s~-v~~~~~~G~RyL~CslC~teW~~~R~~C~~Cg~ 234 (309)
T PRK03564 186 QRQFCPVCGSMPVSSV-VQIGTTQGLRYLHCNLCESEWHVVRVKCSNCEQ 234 (309)
T ss_pred CCCCCCCCCCcchhhe-eeccCCCCceEEEcCCCCCcccccCccCCCCCC
Confidence 3467999988742210 11000 11245556688899888899999964
No 238
>KOG4577 consensus Transcription factor LIM3, contains LIM and HOX domains [Transcription]
Probab=21.90 E-value=23 Score=34.05 Aligned_cols=33 Identities=21% Similarity=0.599 Sum_probs=25.7
Q ss_pred CcccccccccccCCcceEEecCCCccccHHHHHHH
Q 048010 110 ALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAW 144 (320)
Q Consensus 110 ~~~C~ICl~~~~~~~~~r~lp~C~H~FH~~Ci~~W 144 (320)
+..|+-|.+-+-..+.||.- -.|+||.+|+...
T Consensus 92 GTKCsaC~~GIpPtqVVRkA--qd~VYHl~CF~C~ 124 (383)
T KOG4577|consen 92 GTKCSACQEGIPPTQVVRKA--QDFVYHLHCFACF 124 (383)
T ss_pred CCcchhhcCCCChHHHHHHh--hcceeehhhhhhH
Confidence 45799999988887777764 5899999996543
No 239
>PRK02624 psbH photosystem II reaction center protein H; Provisional
Probab=21.77 E-value=2.3e+02 Score=21.07 Aligned_cols=6 Identities=33% Similarity=0.883 Sum_probs=2.4
Q ss_pred hHHHHH
Q 048010 33 PSLAII 38 (320)
Q Consensus 33 ~~~~ii 38 (320)
+.|.++
T Consensus 29 plMgv~ 34 (64)
T PRK02624 29 PVMAVF 34 (64)
T ss_pred HHHHHH
Confidence 444433
No 240
>PF03908 Sec20: Sec20; InterPro: IPR005606 Sec20 is a membrane glycoprotein associated with secretory pathway.
Probab=21.71 E-value=1e+02 Score=23.94 Aligned_cols=14 Identities=21% Similarity=0.325 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHH
Q 048010 44 SALFFMGFFSIYIR 57 (320)
Q Consensus 44 ~~~~ll~~~~i~~r 57 (320)
.+||++.+++|+.|
T Consensus 77 ~~~f~~~v~yI~~r 90 (92)
T PF03908_consen 77 FLFFLLVVLYILWR 90 (92)
T ss_pred HHHHHHHHHHHhhh
Confidence 34444444444444
No 241
>PF06667 PspB: Phage shock protein B; InterPro: IPR009554 This family consists of several bacterial phage shock protein B (PspB) sequences. The phage shock protein (psp) operon is induced in response to heat, ethanol, osmotic shock and infection by filamentous bacteriophages []. Expression of the operon requires the alternative sigma factor sigma54 and the transcriptional activator PspF. In addition, PspA plays a negative regulatory role, and the integral-membrane proteins PspB and PspC play a positive one [].; GO: 0006355 regulation of transcription, DNA-dependent, 0009271 phage shock
Probab=21.69 E-value=2.1e+02 Score=21.94 Aligned_cols=9 Identities=11% Similarity=0.091 Sum_probs=3.3
Q ss_pred HHHHHHHHH
Q 048010 49 MGFFSIYIR 57 (320)
Q Consensus 49 l~~~~i~~r 57 (320)
+.++.-|..
T Consensus 20 ~WL~lHY~s 28 (75)
T PF06667_consen 20 IWLILHYRS 28 (75)
T ss_pred HHHHHHHHH
Confidence 333333433
No 242
>PF13179 DUF4006: Family of unknown function (DUF4006)
Probab=21.67 E-value=1.7e+02 Score=21.99 Aligned_cols=22 Identities=32% Similarity=0.705 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 048010 35 LAIIIVVLISALFFMGFFSIYI 56 (320)
Q Consensus 35 ~~iiiiilv~~~~ll~~~~i~~ 56 (320)
|+|+.++|+++++++++..+-+
T Consensus 16 ~LIAvvLLLsIl~~lt~~ai~~ 37 (66)
T PF13179_consen 16 MLIAVVLLLSILAFLTYWAIKV 37 (66)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555554443
No 243
>COG3492 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.31 E-value=48 Score=26.48 Aligned_cols=13 Identities=23% Similarity=0.813 Sum_probs=11.0
Q ss_pred cccHHHHHHHHhc
Q 048010 135 VFHPECIDAWLES 147 (320)
Q Consensus 135 ~FH~~Ci~~Wl~~ 147 (320)
-||..|+..|.+.
T Consensus 42 gFCRNCLs~Wy~e 54 (104)
T COG3492 42 GFCRNCLSNWYRE 54 (104)
T ss_pred HHHHHHHHHHHHH
Confidence 4999999999853
No 244
>PRK00753 psbL photosystem II reaction center L; Provisional
Probab=21.17 E-value=2.1e+02 Score=19.04 Aligned_cols=18 Identities=22% Similarity=0.388 Sum_probs=8.0
Q ss_pred CCcchHHHHHHHHHHHHH
Q 048010 29 MKFSPSLAIIIVVLISAL 46 (320)
Q Consensus 29 ~~~~~~~~iiiiilv~~~ 46 (320)
...+..+..+++++++++
T Consensus 15 NRTSLy~GlLlifvl~vL 32 (39)
T PRK00753 15 NRTSLYLGLLLVFVLGIL 32 (39)
T ss_pred chhhHHHHHHHHHHHHHH
Confidence 344444444444444433
No 245
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=21.13 E-value=1e+02 Score=32.18 Aligned_cols=21 Identities=14% Similarity=0.127 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 048010 37 IIIVVLISALFFMGFFSIYIR 57 (320)
Q Consensus 37 iiiiilv~~~~ll~~~~i~~r 57 (320)
++++++|++++++++.+++.|
T Consensus 5 ~ii~i~ii~i~~~~~~~~~rr 25 (569)
T PRK04778 5 LIIAIVVIIIIAYLAGLILRK 25 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333334434433
No 246
>PRK00523 hypothetical protein; Provisional
Probab=21.12 E-value=2e+02 Score=21.93 Aligned_cols=8 Identities=13% Similarity=0.326 Sum_probs=3.3
Q ss_pred CCCHHHHh
Q 048010 84 GLDREVID 91 (320)
Q Consensus 84 gl~~~~i~ 91 (320)
.++++.|.
T Consensus 39 pine~mir 46 (72)
T PRK00523 39 PITENMIR 46 (72)
T ss_pred CCCHHHHH
Confidence 34444443
No 247
>PRK09040 hypothetical protein; Provisional
Probab=21.11 E-value=1.3e+02 Score=27.40 Aligned_cols=25 Identities=12% Similarity=0.186 Sum_probs=18.1
Q ss_pred CCCCcchHHHHHHHHHHHHHHHHHH
Q 048010 27 SNMKFSPSLAIIIVVLISALFFMGF 51 (320)
Q Consensus 27 ~~~~~~~~~~iiiiilv~~~~ll~~ 51 (320)
....+|.++.-++..|+.+|+++.+
T Consensus 10 ~~~~~W~s~sDLMs~Lm~iFlli~v 34 (214)
T PRK09040 10 QTAPVWAVFGDLMSVLLGAFVLILV 34 (214)
T ss_pred CCCCeeeeHHHHHHHHHHHHHHHHH
Confidence 4566777788888887777776664
No 248
>PF06024 DUF912: Nucleopolyhedrovirus protein of unknown function (DUF912); InterPro: IPR009261 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf78; it is a family of uncharacterised viral proteins.
Probab=21.11 E-value=69 Score=25.66 Aligned_cols=21 Identities=19% Similarity=0.281 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 048010 34 SLAIIIVVLISALFFMGFFSI 54 (320)
Q Consensus 34 ~~~iiiiilv~~~~ll~~~~i 54 (320)
.+.++++++++++++++++++
T Consensus 60 ~~~iili~lls~v~IlVily~ 80 (101)
T PF06024_consen 60 NGNIILISLLSFVCILVILYA 80 (101)
T ss_pred cccchHHHHHHHHHHHHHHhh
Confidence 467777777777776555433
No 249
>PRK01844 hypothetical protein; Provisional
Probab=20.73 E-value=2.1e+02 Score=21.85 Aligned_cols=7 Identities=0% Similarity=0.572 Sum_probs=2.8
Q ss_pred CCHHHHh
Q 048010 85 LDREVID 91 (320)
Q Consensus 85 l~~~~i~ 91 (320)
++++.|.
T Consensus 39 ine~mir 45 (72)
T PRK01844 39 INEQMLK 45 (72)
T ss_pred CCHHHHH
Confidence 3344443
No 250
>PF06422 PDR_CDR: CDR ABC transporter; InterPro: IPR010929 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). In yeast, the PDR and CDR ABC transporters display extensive sequence homology, and confer resistance to several anti-fungal compounds by actively transporting their substrates out of the cell. These transporters have two homologous halves, each with an N-terminal intracellular hydrophilic region that contains an ATP-binding site, followed by a C-terminal membrane-associated region containing six transmembrane segments []. This entry represents a domain of the PDR/CDR ABC transporter comprising extracellular loop 3, transmembrane segment 6 and a linker region.; GO: 0005524 ATP binding, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0006810 transport, 0016021 integral to membrane
Probab=20.54 E-value=1.4e+02 Score=23.81 Aligned_cols=30 Identities=17% Similarity=0.185 Sum_probs=17.2
Q ss_pred CCCCCcchHHHHHHHHHHHHHHHHHHHHHH
Q 048010 26 YSNMKFSPSLAIIIVVLISALFFMGFFSIY 55 (320)
Q Consensus 26 ~~~~~~~~~~~iiiiilv~~~~ll~~~~i~ 55 (320)
|.....|..+.|++++++..+++..++.-+
T Consensus 43 y~~sh~WRN~GIli~f~i~f~~~~~~~~e~ 72 (103)
T PF06422_consen 43 YSYSHRWRNFGILIAFWIFFIVLTLLATEF 72 (103)
T ss_pred ccccchhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 445566777777777666544444443333
No 251
>TIGR02976 phageshock_pspB phage shock protein B. This model describes the PspB protein of the psp (phage shock protein) operon, as found in Escherichia coli and many related species. Expression of a phage protein called secretin protein IV, and a number of other stresses including ethanol, heat shock, and defects in protein secretion trigger sigma-54-dependent expression of the phage shock regulon. PspB is both a regulator and an effector protein of the phage shock response.
Probab=20.48 E-value=2.5e+02 Score=21.50 Aligned_cols=11 Identities=9% Similarity=0.075 Sum_probs=5.0
Q ss_pred CCCCHHHHhhC
Q 048010 83 RGLDREVIDTF 93 (320)
Q Consensus 83 ~gl~~~~i~~l 93 (320)
.|++.+..+.+
T Consensus 34 ~~ls~~d~~~L 44 (75)
T TIGR02976 34 ASLSTDDQALL 44 (75)
T ss_pred CCCCHHHHHHH
Confidence 34554444443
Done!