Query 048010
Match_columns 320
No_of_seqs 338 out of 2166
Neff 6.4
Searched_HMMs 29240
Date Mon Mar 25 09:02:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048010.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/048010hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2l0b_A E3 ubiquitin-protein li 99.7 4.1E-17 1.4E-21 127.7 7.5 80 78-160 10-89 (91)
2 1x4j_A Ring finger protein 38; 99.6 1.5E-16 5.2E-21 119.6 3.7 68 90-161 6-73 (75)
3 1iym_A EL5; ring-H2 finger, ub 99.5 2.6E-15 8.9E-20 105.9 3.8 51 109-159 4-54 (55)
4 2ep4_A Ring finger protein 24; 99.5 9.7E-15 3.3E-19 109.2 6.3 53 108-161 13-65 (74)
5 2kiz_A E3 ubiquitin-protein li 99.5 1.4E-14 4.8E-19 106.9 6.0 53 108-161 12-64 (69)
6 2ecl_A Ring-box protein 2; RNF 99.5 8.9E-15 3.1E-19 112.1 4.6 52 109-160 14-76 (81)
7 2ect_A Ring finger protein 126 99.5 1.3E-14 4.6E-19 109.5 4.9 54 108-162 13-66 (78)
8 1v87_A Deltex protein 2; ring- 99.4 1E-13 3.6E-18 111.9 5.6 54 109-163 24-97 (114)
9 3dpl_R Ring-box protein 1; ubi 99.4 3.6E-14 1.2E-18 114.6 2.8 66 93-159 20-100 (106)
10 2ecm_A Ring finger and CHY zin 99.4 1.4E-13 4.9E-18 96.7 4.3 50 109-159 4-54 (55)
11 3ng2_A RNF4, snurf, ring finge 99.4 2.6E-13 8.8E-18 100.2 4.4 53 108-161 8-64 (71)
12 2ea6_A Ring finger protein 4; 99.4 2.4E-13 8.2E-18 99.6 4.2 51 108-159 13-67 (69)
13 2xeu_A Ring finger protein 4; 99.4 3.3E-13 1.1E-17 97.4 3.7 52 109-161 2-57 (64)
14 4a0k_B E3 ubiquitin-protein li 99.3 6E-14 2.1E-18 115.2 -1.7 68 92-159 30-111 (117)
15 2ecn_A Ring finger protein 141 99.3 6.4E-13 2.2E-17 98.1 3.4 49 108-161 13-61 (70)
16 2d8s_A Cellular modulator of i 99.3 1.1E-12 3.8E-17 100.6 4.8 53 108-162 13-72 (80)
17 2djb_A Polycomb group ring fin 99.3 2.1E-12 7.3E-17 96.1 5.1 52 108-162 13-64 (72)
18 1chc_A Equine herpes virus-1 r 99.3 1.9E-12 6.4E-17 95.0 4.4 48 109-159 4-51 (68)
19 2ct2_A Tripartite motif protei 99.3 4.4E-12 1.5E-16 97.2 5.4 53 108-161 13-69 (88)
20 2d8t_A Dactylidin, ring finger 99.2 3E-12 1E-16 95.0 3.5 48 109-160 14-61 (71)
21 2ct0_A Non-SMC element 1 homol 99.2 5.1E-12 1.7E-16 95.6 4.7 51 109-162 14-66 (74)
22 2ysl_A Tripartite motif-contai 99.2 1.3E-11 4.3E-16 91.6 4.8 50 108-161 18-70 (73)
23 2csy_A Zinc finger protein 183 99.2 1.7E-11 5.7E-16 93.2 4.7 48 108-159 13-60 (81)
24 4ayc_A E3 ubiquitin-protein li 99.2 1.4E-11 4.6E-16 103.2 4.1 47 110-160 53-99 (138)
25 2ecy_A TNF receptor-associated 99.2 2.1E-11 7.3E-16 89.0 4.6 50 108-161 13-63 (66)
26 4ap4_A E3 ubiquitin ligase RNF 99.2 1.5E-11 5.1E-16 100.7 3.9 53 108-161 5-61 (133)
27 2yur_A Retinoblastoma-binding 99.1 2.3E-11 7.8E-16 91.1 3.4 48 109-159 14-63 (74)
28 4ap4_A E3 ubiquitin ligase RNF 99.1 2.8E-11 9.7E-16 99.0 4.0 53 108-161 70-126 (133)
29 2ecw_A Tripartite motif-contai 99.1 7.4E-11 2.5E-15 89.4 5.4 48 109-160 18-71 (85)
30 1g25_A CDK-activating kinase a 99.1 5.6E-11 1.9E-15 86.5 4.4 50 110-160 3-55 (65)
31 3lrq_A E3 ubiquitin-protein li 99.1 4.9E-11 1.7E-15 94.5 4.0 49 109-160 21-70 (100)
32 2ecv_A Tripartite motif-contai 99.1 1.7E-10 5.7E-15 87.4 6.3 49 109-161 18-72 (85)
33 2y43_A E3 ubiquitin-protein li 99.1 1E-10 3.5E-15 92.1 4.5 48 110-160 22-69 (99)
34 2ckl_A Polycomb group ring fin 99.0 8E-11 2.7E-15 94.2 3.8 49 109-160 14-62 (108)
35 1t1h_A Gspef-atpub14, armadill 99.0 9.3E-11 3.2E-15 88.2 3.9 48 109-160 7-55 (78)
36 2egp_A Tripartite motif-contai 99.0 6.8E-11 2.3E-15 88.8 2.6 49 108-160 10-65 (79)
37 2ysj_A Tripartite motif-contai 99.0 1.5E-10 5E-15 83.6 4.2 43 108-154 18-63 (63)
38 2ckl_B Ubiquitin ligase protei 99.0 1.6E-10 5.4E-15 99.3 4.2 49 109-160 53-102 (165)
39 2ecj_A Tripartite motif-contai 99.0 2.2E-10 7.4E-15 81.0 3.8 43 108-154 13-58 (58)
40 3fl2_A E3 ubiquitin-protein li 99.0 2.5E-10 8.5E-15 93.5 4.6 47 110-160 52-99 (124)
41 3ztg_A E3 ubiquitin-protein li 99.0 4.1E-10 1.4E-14 87.3 4.3 49 108-159 11-61 (92)
42 1jm7_A BRCA1, breast cancer ty 98.9 5.6E-10 1.9E-14 89.3 4.1 48 110-161 21-71 (112)
43 1z6u_A NP95-like ring finger p 98.9 8E-10 2.7E-14 94.1 4.7 48 110-161 78-126 (150)
44 3hct_A TNF receptor-associated 98.9 5.7E-10 2E-14 90.8 3.0 48 109-160 17-65 (118)
45 2vje_A E3 ubiquitin-protein li 98.9 1.1E-09 3.6E-14 80.1 3.1 47 109-159 7-56 (64)
46 1rmd_A RAG1; V(D)J recombinati 98.8 1.4E-09 4.9E-14 87.9 4.1 48 110-161 23-71 (116)
47 1e4u_A Transcriptional repress 98.8 3.4E-09 1.1E-13 80.7 5.4 54 108-162 9-64 (78)
48 2y1n_A E3 ubiquitin-protein li 98.8 2.1E-09 7.2E-14 104.5 5.1 49 109-161 331-380 (389)
49 3knv_A TNF receptor-associated 98.8 1.7E-09 5.8E-14 91.2 3.5 50 108-161 29-79 (141)
50 3l11_A E3 ubiquitin-protein li 98.8 6.4E-10 2.2E-14 89.8 0.4 47 110-160 15-62 (115)
51 2kr4_A Ubiquitin conjugation f 98.8 3.6E-09 1.2E-13 81.5 4.4 48 109-160 13-60 (85)
52 3k1l_B Fancl; UBC, ring, RWD, 98.8 1.3E-09 4.4E-14 103.9 1.4 53 108-160 306-373 (381)
53 2vje_B MDM4 protein; proto-onc 98.8 3.4E-09 1.2E-13 77.1 3.0 48 110-159 7-55 (63)
54 1wgm_A Ubiquitin conjugation f 98.7 7.1E-09 2.4E-13 82.2 4.7 48 109-160 21-69 (98)
55 1bor_A Transcription factor PM 98.7 3.1E-09 1.1E-13 75.3 2.3 48 108-162 4-51 (56)
56 2kre_A Ubiquitin conjugation f 98.7 5E-09 1.7E-13 83.3 3.5 48 109-160 28-75 (100)
57 4ic3_A E3 ubiquitin-protein li 98.7 6.3E-09 2.2E-13 77.9 2.5 43 110-160 24-67 (74)
58 1jm7_B BARD1, BRCA1-associated 98.7 4.4E-09 1.5E-13 85.3 1.6 44 110-159 22-66 (117)
59 1vyx_A ORF K3, K3RING; zinc-bi 98.6 2.9E-08 9.9E-13 71.8 4.0 48 108-159 4-58 (60)
60 2yu4_A E3 SUMO-protein ligase 98.5 3.5E-08 1.2E-12 77.2 3.6 48 109-159 6-62 (94)
61 3hcs_A TNF receptor-associated 98.5 2.4E-08 8.3E-13 85.9 2.9 49 108-160 16-65 (170)
62 2c2l_A CHIP, carboxy terminus 98.5 3.8E-08 1.3E-12 89.9 3.9 48 109-160 207-255 (281)
63 1wim_A KIAA0161 protein; ring 98.5 4.2E-08 1.4E-12 76.5 3.3 48 109-157 4-61 (94)
64 2ea5_A Cell growth regulator w 98.5 9.9E-08 3.4E-12 70.5 3.6 44 109-160 14-58 (68)
65 2ecg_A Baculoviral IAP repeat- 98.4 5.7E-08 1.9E-12 72.7 2.3 43 110-160 25-68 (75)
66 2yho_A E3 ubiquitin-protein li 98.4 1.2E-07 4E-12 72.1 2.5 43 110-160 18-61 (79)
67 2f42_A STIP1 homology and U-bo 98.3 2.3E-07 7.9E-12 81.2 4.0 48 109-160 105-153 (179)
68 2bay_A PRE-mRNA splicing facto 98.3 4.5E-07 1.5E-11 65.6 3.3 48 111-161 4-51 (61)
69 3t6p_A Baculoviral IAP repeat- 98.2 3.5E-07 1.2E-11 87.8 1.6 43 109-159 294-337 (345)
70 3htk_C E3 SUMO-protein ligase 98.1 7.4E-07 2.5E-11 82.2 2.7 49 109-160 180-232 (267)
71 3nw0_A Non-structural maintena 98.0 8E-06 2.7E-10 74.5 6.2 50 109-161 179-230 (238)
72 3vk6_A E3 ubiquitin-protein li 97.9 9E-06 3.1E-10 64.2 4.0 44 113-159 4-48 (101)
73 2lri_C Autoimmune regulator; Z 95.8 0.0067 2.3E-07 44.2 3.5 48 109-160 11-62 (66)
74 2ko5_A Ring finger protein Z; 94.1 0.032 1.1E-06 43.4 3.1 48 109-161 27-74 (99)
75 2jun_A Midline-1; B-BOX, TRIM, 92.8 0.069 2.4E-06 41.1 3.2 34 110-144 3-36 (101)
76 1we9_A PHD finger family prote 89.3 0.083 2.8E-06 37.6 0.4 49 109-157 5-58 (64)
77 3lqh_A Histone-lysine N-methyl 85.6 0.32 1.1E-05 42.2 2.0 47 111-157 3-63 (183)
78 2l5u_A Chromodomain-helicase-D 85.6 0.46 1.6E-05 33.6 2.5 45 109-157 10-58 (61)
79 2k16_A Transcription initiatio 85.5 0.21 7.2E-06 36.7 0.6 50 109-159 17-70 (75)
80 1wil_A KIAA1045 protein; ring 84.1 0.65 2.2E-05 35.4 2.8 34 109-144 14-47 (89)
81 3u5n_A E3 ubiquitin-protein li 83.0 0.27 9.3E-06 43.1 0.4 46 109-158 6-55 (207)
82 2xb1_A Pygopus homolog 2, B-ce 82.5 0.21 7.1E-06 39.5 -0.5 48 111-158 4-62 (105)
83 3o36_A Transcription intermedi 82.5 0.29 9.9E-06 42.0 0.4 45 109-157 3-51 (184)
84 1wev_A Riken cDNA 1110020M19; 82.2 0.36 1.2E-05 36.8 0.7 50 110-159 16-74 (88)
85 2lv9_A Histone-lysine N-methyl 80.5 0.41 1.4E-05 37.2 0.5 46 109-156 27-75 (98)
86 1f62_A Transcription factor WS 80.4 0.64 2.2E-05 31.3 1.5 44 112-156 2-49 (51)
87 2ysm_A Myeloid/lymphoid or mix 79.7 0.47 1.6E-05 37.3 0.6 47 108-155 5-55 (111)
88 1wep_A PHF8; structural genomi 79.6 1.2 4E-05 33.0 2.8 48 110-158 12-64 (79)
89 2ku3_A Bromodomain-containing 78.9 0.66 2.2E-05 34.0 1.2 50 108-157 14-66 (71)
90 1wem_A Death associated transc 78.6 0.74 2.5E-05 33.8 1.4 48 110-159 16-72 (76)
91 1nla_A Transcriptional repress 78.2 1.2 4E-05 32.1 2.3 19 250-268 5-23 (64)
92 2l43_A N-teminal domain from h 78.0 0.7 2.4E-05 35.2 1.2 51 109-159 24-77 (88)
93 1baz_A ARC repressor; transcri 77.8 1.2 4.1E-05 30.6 2.2 18 251-268 6-23 (53)
94 1mm2_A MI2-beta; PHD, zinc fin 77.1 0.4 1.4E-05 34.0 -0.5 45 109-157 8-56 (61)
95 2ri7_A Nucleosome-remodeling f 76.8 0.73 2.5E-05 39.0 1.0 48 109-157 7-59 (174)
96 3v43_A Histone acetyltransfera 75.8 0.69 2.4E-05 36.6 0.6 45 112-156 63-111 (112)
97 2kgg_A Histone demethylase jar 75.6 0.92 3.1E-05 30.9 1.1 44 112-155 4-52 (52)
98 1wew_A DNA-binding family prot 75.1 0.9 3.1E-05 33.6 1.0 49 109-158 15-73 (78)
99 3qoq_A Alginate and motility r 73.6 1.4 4.8E-05 32.2 1.7 19 250-268 17-35 (69)
100 1xwh_A Autoimmune regulator; P 73.2 0.51 1.7E-05 33.9 -0.8 45 109-157 7-55 (66)
101 2klu_A T-cell surface glycopro 72.7 9.3 0.00032 27.6 5.8 26 37-62 12-37 (70)
102 2vpb_A Hpygo1, pygopus homolog 71.8 3.1 0.0001 29.8 3.2 47 109-155 7-64 (65)
103 2lbm_A Transcriptional regulat 71.7 4.1 0.00014 33.8 4.3 45 108-156 61-116 (142)
104 2jwa_A Receptor tyrosine-prote 71.4 12 0.0004 24.9 5.6 28 30-58 10-37 (44)
105 2yql_A PHD finger protein 21A; 71.2 0.49 1.7E-05 32.8 -1.2 44 109-156 8-55 (56)
106 1fp0_A KAP-1 corepressor; PHD 70.8 1.9 6.5E-05 33.0 2.0 46 108-157 23-72 (88)
107 2puy_A PHD finger protein 21A; 69.9 0.55 1.9E-05 32.9 -1.2 47 109-159 4-54 (60)
108 1weo_A Cellulose synthase, cat 69.3 12 0.0004 28.7 6.0 52 109-160 15-70 (93)
109 3m62_A Ubiquitin conjugation f 67.9 3.8 0.00013 43.9 4.1 48 109-160 890-938 (968)
110 2ro1_A Transcription intermedi 67.7 0.98 3.4E-05 39.1 -0.3 44 110-157 2-49 (189)
111 1wee_A PHD finger family prote 67.3 0.98 3.4E-05 32.8 -0.3 48 109-157 15-66 (72)
112 3ql9_A Transcriptional regulat 66.2 6.5 0.00022 32.1 4.4 44 109-156 56-110 (129)
113 2cs3_A Protein C14ORF4, MY039 64.7 7.9 0.00027 29.2 4.2 39 109-147 14-52 (93)
114 2yt5_A Metal-response element- 64.6 3.5 0.00012 29.1 2.2 49 109-157 5-61 (66)
115 3shb_A E3 ubiquitin-protein li 63.2 0.95 3.3E-05 33.7 -1.1 45 112-157 28-77 (77)
116 3o70_A PHD finger protein 13; 62.6 1.4 4.8E-05 31.9 -0.3 46 109-156 18-66 (68)
117 2cu8_A Cysteine-rich protein 2 62.5 5.5 0.00019 28.4 3.0 40 110-160 9-48 (76)
118 2e6r_A Jumonji/ARID domain-con 62.5 0.64 2.2E-05 35.7 -2.2 49 109-158 15-67 (92)
119 3v43_A Histone acetyltransfera 62.3 10 0.00035 29.6 4.8 46 110-155 5-62 (112)
120 2e6s_A E3 ubiquitin-protein li 61.4 1.3 4.6E-05 32.8 -0.6 44 112-156 28-76 (77)
121 3asl_A E3 ubiquitin-protein li 57.1 1.9 6.4E-05 31.3 -0.4 44 112-156 20-68 (70)
122 1mnt_A MNT repressor; transcri 57.0 5.2 0.00018 29.5 2.0 18 251-268 3-20 (76)
123 1x4k_A Skeletal muscle LIM-pro 56.9 8.4 0.00029 26.9 3.1 40 111-160 6-45 (72)
124 2dj7_A Actin-binding LIM prote 56.8 6.9 0.00024 28.5 2.7 39 110-159 15-53 (80)
125 1iml_A CRIP, cysteine rich int 56.2 5.6 0.00019 28.4 2.1 37 112-159 2-38 (76)
126 1wyh_A SLIM 2, skeletal muscle 56.1 9.6 0.00033 26.6 3.3 41 110-160 5-45 (72)
127 4gne_A Histone-lysine N-methyl 56.0 9.4 0.00032 30.0 3.5 48 108-161 13-66 (107)
128 2k1k_A Ephrin type-A receptor 55.6 19 0.00065 23.0 4.3 28 30-57 9-36 (38)
129 1g47_A Pinch protein; LIM doma 55.2 9.5 0.00033 27.0 3.2 42 109-160 10-51 (77)
130 3ask_A E3 ubiquitin-protein li 54.3 2.5 8.5E-05 37.8 -0.2 45 112-157 176-225 (226)
131 1weu_A Inhibitor of growth fam 54.3 4.8 0.00016 30.8 1.5 45 109-158 35-86 (91)
132 2co8_A NEDD9 interacting prote 54.0 7.8 0.00027 28.3 2.6 41 109-160 14-54 (82)
133 1z2q_A LM5-1; membrane protein 53.7 8.6 0.0003 28.6 2.8 36 109-144 20-55 (84)
134 1x61_A Thyroid receptor intera 53.6 10 0.00035 26.5 3.1 39 111-159 6-44 (72)
135 1wen_A Inhibitor of growth fam 53.4 7.7 0.00026 28.1 2.4 45 109-158 15-66 (71)
136 2yw8_A RUN and FYVE domain-con 53.2 8.6 0.00029 28.4 2.7 36 109-144 18-53 (82)
137 2kwj_A Zinc finger protein DPF 53.2 8.2 0.00028 30.4 2.8 45 111-155 2-59 (114)
138 1wfk_A Zinc finger, FYVE domai 52.4 9 0.00031 28.9 2.7 51 109-159 8-65 (88)
139 3t7l_A Zinc finger FYVE domain 52.1 7.4 0.00025 29.4 2.2 49 110-158 20-74 (90)
140 1y02_A CARP2, FYVE-ring finger 51.9 2.2 7.5E-05 34.4 -0.8 49 110-158 19-67 (120)
141 1u9p_A PARC; unknown function; 51.6 6.1 0.00021 31.9 1.7 18 251-268 17-34 (120)
142 1x63_A Skeletal muscle LIM-pro 51.0 12 0.00041 26.8 3.2 40 111-160 16-55 (82)
143 1joc_A EEA1, early endosomal a 51.0 8.1 0.00028 31.1 2.4 34 110-143 69-102 (125)
144 1a7i_A QCRP2 (LIM1); LIM domai 50.5 5.8 0.0002 28.7 1.4 40 110-160 7-46 (81)
145 3f6q_B LIM and senescent cell 50.1 11 0.00039 26.0 2.9 41 110-160 11-51 (72)
146 2rsd_A E3 SUMO-protein ligase 49.6 1.8 6E-05 31.1 -1.6 45 111-156 11-64 (68)
147 1vfy_A Phosphatidylinositol-3- 49.5 11 0.00038 27.2 2.7 33 111-143 12-44 (73)
148 1x4l_A Skeletal muscle LIM-pro 48.2 14 0.00049 25.8 3.2 40 110-159 5-46 (72)
149 2d8y_A Eplin protein; LIM doma 48.1 12 0.00041 27.6 2.8 40 110-160 15-54 (91)
150 2knc_A Integrin alpha-IIB; tra 48.1 42 0.0014 23.1 5.4 25 33-57 11-35 (54)
151 1x4u_A Zinc finger, FYVE domai 47.6 10 0.00036 28.1 2.4 33 109-141 13-45 (84)
152 3mpx_A FYVE, rhogef and PH dom 47.0 4 0.00014 38.9 0.0 50 109-158 374-430 (434)
153 1dvp_A HRS, hepatocyte growth 46.4 8.7 0.0003 33.6 2.1 35 110-144 161-195 (220)
154 2ysm_A Myeloid/lymphoid or mix 46.3 2.9 9.9E-05 32.7 -1.0 45 112-157 56-104 (111)
155 3zyq_A Hepatocyte growth facto 46.0 9.4 0.00032 33.7 2.3 35 110-144 164-198 (226)
156 1x68_A FHL5 protein; four-and- 46.0 19 0.00064 25.5 3.6 39 111-159 6-46 (76)
157 2l2t_A Receptor tyrosine-prote 45.7 49 0.0017 21.8 5.2 21 38-58 16-36 (44)
158 3kqi_A GRC5, PHD finger protei 44.4 5.9 0.0002 28.8 0.6 46 111-157 11-61 (75)
159 2kwj_A Zinc finger protein DPF 43.7 2 6.9E-05 34.0 -2.3 47 112-159 60-110 (114)
160 1zbd_B Rabphilin-3A; G protein 43.4 12 0.00042 30.5 2.4 50 107-156 52-106 (134)
161 2d8x_A Protein pinch; LIM doma 43.3 18 0.00061 25.1 3.0 39 110-160 5-43 (70)
162 2ks1_B Epidermal growth factor 43.1 36 0.0012 22.5 4.2 11 48-58 27-37 (44)
163 1x62_A C-terminal LIM domain p 42.9 14 0.00048 26.5 2.4 38 110-159 15-52 (79)
164 3i2d_A E3 SUMO-protein ligase 42.8 18 0.00061 34.6 3.7 46 111-160 250-300 (371)
165 2l8s_A Integrin alpha-1; trans 42.3 40 0.0014 23.3 4.5 23 35-57 10-32 (54)
166 2l4z_A DNA endonuclease RBBP8, 42.3 13 0.00043 29.5 2.3 39 110-159 61-99 (123)
167 2cpg_A REPA protein, transcrip 42.0 8.5 0.00029 24.5 1.0 26 253-278 3-30 (45)
168 2d8z_A Four and A half LIM dom 41.7 19 0.00066 24.8 3.0 38 110-159 5-42 (70)
169 3c6w_A P28ING5, inhibitor of g 41.5 8 0.00027 26.9 0.8 42 110-156 9-57 (59)
170 1x64_A Alpha-actinin-2 associa 40.7 22 0.00075 26.0 3.3 39 110-160 25-63 (89)
171 2cor_A Pinch protein; LIM doma 40.1 22 0.00075 25.5 3.1 40 109-160 14-53 (79)
172 2dar_A PDZ and LIM domain prot 39.8 18 0.00062 26.5 2.7 40 109-160 24-63 (90)
173 3kv5_D JMJC domain-containing 39.5 8 0.00027 38.3 0.8 47 110-157 37-88 (488)
174 1v6g_A Actin binding LIM prote 39.3 23 0.00077 25.3 3.1 38 111-160 16-53 (81)
175 4fo9_A E3 SUMO-protein ligase 39.3 22 0.00075 33.9 3.7 46 111-160 216-266 (360)
176 2vnf_A ING 4, P29ING4, inhibit 38.6 6.4 0.00022 27.5 -0.0 42 110-156 10-58 (60)
177 1nyp_A Pinch protein; LIM doma 38.6 14 0.00049 25.3 1.8 38 110-159 5-42 (66)
178 2g6q_A Inhibitor of growth pro 38.5 6.8 0.00023 27.6 0.1 45 109-156 10-59 (62)
179 2gmg_A Hypothetical protein PF 38.4 6.6 0.00023 30.9 -0.0 27 131-162 72-98 (105)
180 2ay0_A Bifunctional PUTA prote 37.7 9.4 0.00032 26.5 0.7 27 253-279 4-32 (58)
181 3mjh_B Early endosome antigen 37.5 3.9 0.00013 25.7 -1.2 17 110-126 5-21 (34)
182 2k1a_A Integrin alpha-IIB; sin 37.3 85 0.0029 20.4 5.6 25 33-57 9-33 (42)
183 2l3k_A Rhombotin-2, linker, LI 36.5 14 0.00047 29.1 1.6 37 112-158 10-46 (123)
184 2egq_A FHL1 protein; LIM domai 35.6 25 0.00086 24.7 2.8 39 111-159 16-57 (77)
185 2k21_A Potassium voltage-gated 35.2 54 0.0018 26.7 4.9 28 34-61 53-80 (138)
186 2cur_A Skeletal muscle LIM-pro 34.9 22 0.00074 24.5 2.3 38 110-159 5-42 (69)
187 1afo_A Glycophorin A; integral 34.0 94 0.0032 20.0 5.2 27 33-59 11-37 (40)
188 2cup_A Skeletal muscle LIM-pro 33.5 33 0.0011 25.4 3.3 38 111-159 6-44 (101)
189 2gpe_A Bifunctional protein PU 33.2 15 0.00051 24.3 1.1 27 253-279 4-32 (52)
190 2o35_A Hypothetical protein DU 33.0 17 0.00057 28.4 1.5 11 136-146 43-53 (105)
191 2ehe_A Four and A half LIM dom 33.0 23 0.00078 25.3 2.2 39 111-159 16-54 (82)
192 1iij_A ERBB-2 receptor protein 32.9 23 0.0008 22.3 1.9 17 42-58 17-33 (35)
193 3o7a_A PHD finger protein 13 v 32.6 6.7 0.00023 26.4 -0.7 41 115-156 8-51 (52)
194 3fyb_A Protein of unknown func 32.6 17 0.00058 28.3 1.5 11 136-146 42-52 (104)
195 2l9u_A Receptor tyrosine-prote 32.4 63 0.0021 20.3 3.8 25 34-58 7-32 (40)
196 2lx0_A Membrane fusion protein 32.4 65 0.0022 19.2 3.6 23 37-59 7-29 (32)
197 2d8v_A Zinc finger FYVE domain 31.6 20 0.00067 25.9 1.6 31 109-144 7-38 (67)
198 1zfo_A LAsp-1; LIM domain, zin 30.3 16 0.00055 21.9 0.8 28 111-141 4-31 (31)
199 1wig_A KIAA1808 protein; LIM d 30.0 25 0.00085 24.8 2.0 37 111-159 6-42 (73)
200 1m3v_A FLIN4, fusion of the LI 29.1 34 0.0012 26.6 2.8 39 109-158 4-42 (122)
201 2dlo_A Thyroid receptor-intera 29.1 40 0.0014 24.0 3.0 38 110-159 15-52 (81)
202 1x6a_A LIMK-2, LIM domain kina 28.9 32 0.0011 24.4 2.4 37 111-159 16-52 (81)
203 2k9i_A Plasmid PRN1, complete 28.7 19 0.00066 23.7 1.1 27 252-278 9-37 (55)
204 1z60_A TFIIH basal transcripti 28.5 22 0.00075 24.9 1.4 42 111-154 16-58 (59)
205 3kv4_A PHD finger protein 8; e 27.5 17 0.00057 35.6 0.8 47 112-158 6-57 (447)
206 2k5j_A Uncharacterized protein 27.4 26 0.0009 25.7 1.7 29 250-278 7-37 (80)
207 2rgt_A Fusion of LIM/homeobox 26.8 43 0.0015 27.6 3.2 39 111-159 66-104 (169)
208 3a1b_A DNA (cytosine-5)-methyl 26.6 50 0.0017 27.8 3.5 43 109-155 78-132 (159)
209 2jmi_A Protein YNG1, ING1 homo 26.5 14 0.00047 28.2 0.0 45 109-156 25-75 (90)
210 2kog_A Vesicle-associated memb 26.4 75 0.0026 25.2 4.4 10 31-40 92-101 (119)
211 1j2o_A FLIN2, fusion of rhombo 26.4 34 0.0012 26.3 2.3 38 111-159 4-41 (114)
212 2cuq_A Four and A half LIM dom 25.8 43 0.0015 23.6 2.7 37 111-159 16-52 (80)
213 1rut_X Flinc4, fusion protein 25.6 39 0.0013 28.4 2.7 38 112-159 71-108 (188)
214 1b8t_A Protein (CRP1); LIM dom 25.4 41 0.0014 28.3 2.9 40 110-160 115-154 (192)
215 2zet_C Melanophilin; complex, 25.1 34 0.0012 28.4 2.2 47 109-156 67-116 (153)
216 1x3h_A Leupaxin; paxillin fami 25.1 41 0.0014 23.7 2.4 38 111-160 16-53 (80)
217 2pv0_B DNA (cytosine-5)-methyl 25.0 46 0.0016 31.9 3.4 44 109-156 92-147 (386)
218 2iyb_E Testin, TESS, TES; LIM 24.5 47 0.0016 22.6 2.6 39 111-159 3-43 (65)
219 1b8t_A Protein (CRP1); LIM dom 24.1 45 0.0015 28.0 2.9 38 111-159 8-45 (192)
220 2xqn_T Testin, TESS; metal-bin 23.8 57 0.0019 25.2 3.2 45 110-159 30-74 (126)
221 3arc_H Photosystem II reaction 23.8 1.2E+02 0.004 21.6 4.4 7 28-34 21-27 (65)
222 2k9j_B Integrin beta-3; transm 22.7 1.1E+02 0.0039 19.8 3.9 6 36-41 11-16 (43)
223 2khu_A Immunoglobulin G-bindin 22.2 34 0.0012 26.5 1.5 17 251-268 69-85 (108)
224 2jo1_A Phospholemman; FXYD1, N 20.8 1.4E+02 0.0047 21.7 4.3 24 37-60 18-41 (72)
225 3j1r_A Archaeal adhesion filam 20.6 1.4E+02 0.0047 17.4 4.1 14 32-45 2-15 (26)
226 2l34_A TYRO protein tyrosine k 20.3 1.1E+02 0.0036 18.9 3.2 20 33-52 8-27 (33)
No 1
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.69 E-value=4.1e-17 Score=127.73 Aligned_cols=80 Identities=29% Similarity=0.676 Sum_probs=68.6
Q ss_pred cccccCCCCHHHHhhCCCcccchhhhhccCCCCcccccccccccCCcceEEecCCCccccHHHHHHHHhcCCCCcccccc
Q 048010 78 RRGAARGLDREVIDTFPTFVYSEVKTLKVGKGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSN 157 (320)
Q Consensus 78 ~r~~~~gl~~~~i~~lp~~~~~~~~~~~~~~~~~~C~ICl~~~~~~~~~r~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~ 157 (320)
......+++++.|+.||.+.+..... ......+|+||+++|..++.++.++ |+|.||..||+.|++.+.+||+||+.
T Consensus 10 ~~~~~~~~s~~~i~~lp~~~~~~~~~--~~~~~~~C~IC~~~~~~~~~~~~l~-C~H~Fh~~Ci~~wl~~~~~CP~Cr~~ 86 (91)
T 2l0b_A 10 HMVANPPASKESIDALPEILVTEDHG--AVGQEMCCPICCSEYVKGDVATELP-CHHYFHKPCVSIWLQKSGTCPVCRCM 86 (91)
T ss_dssp CSSCCCCCCHHHHHTSCEEECCTTCS--SSSSCSEETTTTEECCTTCEEEEET-TTEEEEHHHHHHHHTTTCBCTTTCCB
T ss_pred CCcCCCCCCHHHHHhCCCeeeccccc--ccCCCCCCcccChhhcCCCcEEecC-CCChHHHHHHHHHHHcCCcCcCcCcc
Confidence 34467899999999999998876432 2345678999999999999999998 99999999999999999999999998
Q ss_pred ccC
Q 048010 158 LAS 160 (320)
Q Consensus 158 l~~ 160 (320)
+..
T Consensus 87 ~~~ 89 (91)
T 2l0b_A 87 FPP 89 (91)
T ss_dssp SSC
T ss_pred CCC
Confidence 853
No 2
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.62 E-value=1.5e-16 Score=119.65 Aligned_cols=68 Identities=32% Similarity=0.915 Sum_probs=57.5
Q ss_pred HhhCCCcccchhhhhccCCCCcccccccccccCCcceEEecCCCccccHHHHHHHHhcCCCCccccccccCC
Q 048010 90 IDTFPTFVYSEVKTLKVGKGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLASE 161 (320)
Q Consensus 90 i~~lp~~~~~~~~~~~~~~~~~~C~ICl~~~~~~~~~r~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~~ 161 (320)
++.+|.+.|.... ...+..+|+||+++|..++.++.++ |+|+||..||..|++.+.+||+||+++...
T Consensus 6 i~~lp~~~~~~~~---~~~~~~~C~IC~~~~~~~~~~~~l~-C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~~ 73 (75)
T 1x4j_A 6 SGQLPSYRFNPNN---HQSEQTLCVVCMCDFESRQLLRVLP-CNHEFHAKCVDKWLKANRTCPICRADSGPS 73 (75)
T ss_dssp CSSCCCEEBCSSS---CSSSCCEETTTTEECCBTCEEEEET-TTEEEETTHHHHHHHHCSSCTTTCCCCCCC
T ss_pred HhhCCcEEecCcc---ccCCCCCCeECCcccCCCCeEEEEC-CCCHhHHHHHHHHHHcCCcCcCcCCcCCCC
Confidence 4678888876532 2335678999999999999999998 999999999999999999999999988643
No 3
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.54 E-value=2.6e-15 Score=105.88 Aligned_cols=51 Identities=55% Similarity=1.249 Sum_probs=46.8
Q ss_pred CCcccccccccccCCcceEEecCCCccccHHHHHHHHhcCCCCcccccccc
Q 048010 109 GALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLA 159 (320)
Q Consensus 109 ~~~~C~ICl~~~~~~~~~r~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~ 159 (320)
+..+|+||+++|..++.+..++.|+|+||..||..|++.+.+||+||+++.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 4 DGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV 54 (55)
T ss_dssp CSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred CCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcCCcCcCCCCEeE
Confidence 457899999999999888888779999999999999999999999999874
No 4
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.53 E-value=9.7e-15 Score=109.19 Aligned_cols=53 Identities=36% Similarity=0.879 Sum_probs=48.1
Q ss_pred CCCcccccccccccCCcceEEecCCCccccHHHHHHHHhcCCCCccccccccCC
Q 048010 108 KGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLASE 161 (320)
Q Consensus 108 ~~~~~C~ICl~~~~~~~~~r~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~~ 161 (320)
....+|+||+++|..++.+.+++ |+|+||..||..|++.+.+||+||+++...
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~-C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~~~ 65 (74)
T 2ep4_A 13 NLHELCAVCLEDFKPRDELGICP-CKHAFHRKCLIKWLEVRKVCPLCNMPVLQL 65 (74)
T ss_dssp CCSCBCSSSCCBCCSSSCEEEET-TTEEEEHHHHHHHHHHCSBCTTTCCBCSSC
T ss_pred CCCCCCcCCCcccCCCCcEEEcC-CCCEecHHHHHHHHHcCCcCCCcCcccccc
Confidence 34678999999999999999998 999999999999999999999999998653
No 5
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.51 E-value=1.4e-14 Score=106.86 Aligned_cols=53 Identities=36% Similarity=1.026 Sum_probs=47.8
Q ss_pred CCCcccccccccccCCcceEEecCCCccccHHHHHHHHhcCCCCccccccccCC
Q 048010 108 KGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLASE 161 (320)
Q Consensus 108 ~~~~~C~ICl~~~~~~~~~r~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~~ 161 (320)
....+|+||++.|..++.++.++ |+|+||..||..|++.+.+||+||+.+...
T Consensus 12 ~~~~~C~IC~~~~~~~~~~~~~~-C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 64 (69)
T 2kiz_A 12 DTEEKCTICLSILEEGEDVRRLP-CMHLFHQVCVDQWLITNKKCPICRVDIEAQ 64 (69)
T ss_dssp TCCCSBTTTTBCCCSSSCEEECT-TSCEEEHHHHHHHHHHCSBCTTTCSBSCSC
T ss_pred CCCCCCeeCCccccCCCcEEEeC-CCCHHHHHHHHHHHHcCCCCcCcCccccCc
Confidence 45678999999999888888898 999999999999999999999999998754
No 6
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.51 E-value=8.9e-15 Score=112.11 Aligned_cols=52 Identities=25% Similarity=0.790 Sum_probs=43.3
Q ss_pred CCcccccccccccC-----------CcceEEecCCCccccHHHHHHHHhcCCCCccccccccC
Q 048010 109 GALECAVCLNEFED-----------DETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLAS 160 (320)
Q Consensus 109 ~~~~C~ICl~~~~~-----------~~~~r~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~ 160 (320)
++.+|+||+++|.+ ++.++.+++|+|+||.+||++||+.+.+||+||+++..
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~ 76 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWVV 76 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBCCE
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCCcCCCcch
Confidence 34678888888864 45566666799999999999999999999999998754
No 7
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.50 E-value=1.3e-14 Score=109.51 Aligned_cols=54 Identities=44% Similarity=1.104 Sum_probs=48.6
Q ss_pred CCCcccccccccccCCcceEEecCCCccccHHHHHHHHhcCCCCccccccccCCC
Q 048010 108 KGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLASEP 162 (320)
Q Consensus 108 ~~~~~C~ICl~~~~~~~~~r~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~~~ 162 (320)
....+|+||++.|..++.++.++ |+|+||..||..|++.+.+||+||+.+....
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~-C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 66 (78)
T 2ect_A 13 GSGLECPVCKEDYALGESVRQLP-CNHLFHDSCIVPWLEQHDSCPVCRKSLTGQN 66 (78)
T ss_dssp SSSCCCTTTTSCCCTTSCEEECT-TSCEEETTTTHHHHTTTCSCTTTCCCCCCSC
T ss_pred CCCCCCeeCCccccCCCCEEEeC-CCCeecHHHHHHHHHcCCcCcCcCCccCCcc
Confidence 34578999999999998888898 9999999999999999999999999987544
No 8
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=99.43 E-value=1e-13 Score=111.93 Aligned_cols=54 Identities=26% Similarity=0.676 Sum_probs=43.1
Q ss_pred CCcccccccccccCCc---------------ceEEecCCCccccHHHHHHHH-----hcCCCCccccccccCCCC
Q 048010 109 GALECAVCLNEFEDDE---------------TLRLIPKCDHVFHPECIDAWL-----ESHTTCPVCRSNLASEPG 163 (320)
Q Consensus 109 ~~~~C~ICl~~~~~~~---------------~~r~lp~C~H~FH~~Ci~~Wl-----~~~~~CP~CR~~l~~~~~ 163 (320)
.+.+|+||+++|..+. .+++++ |+|+||..||+.|| +.+.+||+||+.+....+
T Consensus 24 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~-C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~~g 97 (114)
T 1v87_A 24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTK-CSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEKTG 97 (114)
T ss_dssp CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESS-SCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSCSS
T ss_pred CCCcCccCChhhcCcccccccccccccCcccceecCC-CCCcccHHHHHHHHHcccCCCCCcCCCCCCccCCCCC
Confidence 3468999999997653 344665 99999999999999 456799999998875543
No 9
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=99.43 E-value=3.6e-14 Score=114.60 Aligned_cols=66 Identities=27% Similarity=0.528 Sum_probs=50.1
Q ss_pred CCCcccchhhhhccCCCCcccccccccccCCc---------------ceEEecCCCccccHHHHHHHHhcCCCCcccccc
Q 048010 93 FPTFVYSEVKTLKVGKGALECAVCLNEFEDDE---------------TLRLIPKCDHVFHPECIDAWLESHTTCPVCRSN 157 (320)
Q Consensus 93 lp~~~~~~~~~~~~~~~~~~C~ICl~~~~~~~---------------~~r~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~ 157 (320)
+...+|..+........++.|+||++.|...- .+++++ |+|.||..||+.||+.+.+||+||++
T Consensus 20 ~~ik~~~~v~~w~~d~~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~-C~H~FH~~Ci~~Wl~~~~~CP~Cr~~ 98 (106)
T 3dpl_R 20 FEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGV-CNHAFHFHCISRWLKTRQVCPLDNRE 98 (106)
T ss_dssp EEEEEEEEEEEEEESSCSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEET-TSCEEEHHHHHHHHTTCSBCSSSCSB
T ss_pred eeEEEEEEeeEeecCCCCCCCccCChhHhCcCchhhccccccCCccceEeecc-cCcEECHHHHHHHHHcCCcCcCCCCc
Confidence 33444454444444446688999999998641 356666 99999999999999999999999998
Q ss_pred cc
Q 048010 158 LA 159 (320)
Q Consensus 158 l~ 159 (320)
+.
T Consensus 99 ~~ 100 (106)
T 3dpl_R 99 WE 100 (106)
T ss_dssp CC
T ss_pred ce
Confidence 64
No 10
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.40 E-value=1.4e-13 Score=96.72 Aligned_cols=50 Identities=26% Similarity=0.828 Sum_probs=43.0
Q ss_pred CCcccccccccccCCc-ceEEecCCCccccHHHHHHHHhcCCCCcccccccc
Q 048010 109 GALECAVCLNEFEDDE-TLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLA 159 (320)
Q Consensus 109 ~~~~C~ICl~~~~~~~-~~r~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~ 159 (320)
+..+|+||++.|.+++ .+..++ |+|+||..||..|++.+.+||+||+++.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLP-CGHLLHRTCYEEMLKEGYRCPLCSGPSS 54 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECT-TSCEEETTHHHHHHHHTCCCTTSCCSSC
T ss_pred CCCcCcccChhhcCCCcCeEecC-CCCcccHHHHHHHHHcCCcCCCCCCcCC
Confidence 4568999999997654 466676 9999999999999999999999999864
No 11
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.38 E-value=2.6e-13 Score=100.22 Aligned_cols=53 Identities=26% Similarity=0.805 Sum_probs=44.9
Q ss_pred CCCcccccccccccCC----cceEEecCCCccccHHHHHHHHhcCCCCccccccccCC
Q 048010 108 KGALECAVCLNEFEDD----ETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLASE 161 (320)
Q Consensus 108 ~~~~~C~ICl~~~~~~----~~~r~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~~ 161 (320)
.+..+|+||++.|.+. +.+..++ |||.||..||..|++.+.+||+||.++...
T Consensus 8 ~~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 64 (71)
T 3ng2_A 8 SGTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINHK 64 (71)
T ss_dssp TTCCBCTTTCCBHHHHHTTTCCEEECT-TSCEEEHHHHHHHHHHCSBCTTTCCBCCCC
T ss_pred CCCCCCcccChhhhccccccCCeEeCC-CCChHhHHHHHHHHHcCCCCCCCCCccChh
Confidence 3567899999999763 4456676 999999999999999999999999998744
No 12
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.38 E-value=2.4e-13 Score=99.59 Aligned_cols=51 Identities=27% Similarity=0.830 Sum_probs=43.5
Q ss_pred CCCcccccccccccCC----cceEEecCCCccccHHHHHHHHhcCCCCcccccccc
Q 048010 108 KGALECAVCLNEFEDD----ETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLA 159 (320)
Q Consensus 108 ~~~~~C~ICl~~~~~~----~~~r~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~ 159 (320)
.+..+|+||++.|.+. ..+.+++ |+|+||..||..|++.+.+||+||.++.
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 67 (69)
T 2ea6_A 13 SGTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKIN 67 (69)
T ss_dssp TCCCCCTTTCCCHHHHTTTTCCEEECS-SSCEEEHHHHHHHHHHCSSCTTTCCCCC
T ss_pred CCCCCCcccCccccccccccCCeEeCC-CCChhcHHHHHHHHHcCCCCCCCCCccC
Confidence 3567899999999864 3446676 9999999999999999999999999875
No 13
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.35 E-value=3.3e-13 Score=97.37 Aligned_cols=52 Identities=25% Similarity=0.772 Sum_probs=44.0
Q ss_pred CCcccccccccccCC----cceEEecCCCccccHHHHHHHHhcCCCCccccccccCC
Q 048010 109 GALECAVCLNEFEDD----ETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLASE 161 (320)
Q Consensus 109 ~~~~C~ICl~~~~~~----~~~r~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~~ 161 (320)
+..+|+||++.|.+. +.+..++ |||.||..||..|++.+.+||+||.++...
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 57 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINHK 57 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEET-TSCEEEHHHHHHHHHHCSBCTTTCCBCTTT
T ss_pred CCCCCCccChhhhCccccCCCEEeCC-CCCchhHHHHHHHHHcCCCCCCCCccCCcc
Confidence 356899999999864 4456676 999999999999999999999999988643
No 14
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=99.33 E-value=6e-14 Score=115.19 Aligned_cols=68 Identities=26% Similarity=0.511 Sum_probs=9.2
Q ss_pred hCCCcccchhhhhccCCCCcccccccccccCC--------------cceEEecCCCccccHHHHHHHHhcCCCCcccccc
Q 048010 92 TFPTFVYSEVKTLKVGKGALECAVCLNEFEDD--------------ETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSN 157 (320)
Q Consensus 92 ~lp~~~~~~~~~~~~~~~~~~C~ICl~~~~~~--------------~~~r~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~ 157 (320)
.+...+++.+........++.|+||+++|.+. +...++++|+|.||..||+.||+.+.+||+||++
T Consensus 30 r~~ikkw~ava~w~wd~~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~ 109 (117)
T 4a0k_B 30 RFEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNRE 109 (117)
T ss_dssp SEEEEEEEEEEEEEECCCC-------------------------------------------------------------
T ss_pred ceEEEEEEEEEEEeecCCCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcCCcCCCCCCe
Confidence 33444455554444444667999999999752 1222323499999999999999999999999998
Q ss_pred cc
Q 048010 158 LA 159 (320)
Q Consensus 158 l~ 159 (320)
+.
T Consensus 110 ~~ 111 (117)
T 4a0k_B 110 WE 111 (117)
T ss_dssp --
T ss_pred ee
Confidence 64
No 15
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.31 E-value=6.4e-13 Score=98.13 Aligned_cols=49 Identities=35% Similarity=1.011 Sum_probs=43.0
Q ss_pred CCCcccccccccccCCcceEEecCCCccccHHHHHHHHhcCCCCccccccccCC
Q 048010 108 KGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLASE 161 (320)
Q Consensus 108 ~~~~~C~ICl~~~~~~~~~r~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~~ 161 (320)
.+..+|+||++.+.+ .+++ |+|.||..||..|++.+.+||+||.++...
T Consensus 13 ~~~~~C~IC~~~~~~----~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 61 (70)
T 2ecn_A 13 TDEEECCICMDGRAD----LILP-CAHSFCQKCIDKWSDRHRNCPICRLQMTGA 61 (70)
T ss_dssp CCCCCCSSSCCSCCS----EEET-TTEEECHHHHHHSSCCCSSCHHHHHCTTCC
T ss_pred CCCCCCeeCCcCccC----cccC-CCCcccHHHHHHHHHCcCcCCCcCCcccCC
Confidence 356789999999887 5666 999999999999999999999999998744
No 16
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.31 E-value=1.1e-12 Score=100.60 Aligned_cols=53 Identities=28% Similarity=0.792 Sum_probs=44.1
Q ss_pred CCCcccccccccccCCcceEEecCCC-----ccccHHHHHHHHhcC--CCCccccccccCCC
Q 048010 108 KGALECAVCLNEFEDDETLRLIPKCD-----HVFHPECIDAWLESH--TTCPVCRSNLASEP 162 (320)
Q Consensus 108 ~~~~~C~ICl~~~~~~~~~r~lp~C~-----H~FH~~Ci~~Wl~~~--~~CP~CR~~l~~~~ 162 (320)
.+..+|.||+++|.+++.+ ++| |. |.||.+||+.||..+ .+||+||+.+....
T Consensus 13 ~~~~~C~IC~~~~~~~~~l-~~p-C~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~~ 72 (80)
T 2d8s_A 13 SSQDICRICHCEGDDESPL-ITP-CHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIMET 72 (80)
T ss_dssp TTSCCCSSSCCCCCSSSCE-ECS-SSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCCC
T ss_pred CCCCCCeEcCccccCCCee-Eec-cccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecCc
Confidence 3457899999999887776 577 86 999999999999765 59999999986543
No 17
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.29 E-value=2.1e-12 Score=96.10 Aligned_cols=52 Identities=21% Similarity=0.492 Sum_probs=43.3
Q ss_pred CCCcccccccccccCCcceEEecCCCccccHHHHHHHHhcCCCCccccccccCCC
Q 048010 108 KGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLASEP 162 (320)
Q Consensus 108 ~~~~~C~ICl~~~~~~~~~r~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~~~ 162 (320)
+....|+||++.|.+. +.+++ |+|.||..||..|++.+..||+||.++....
T Consensus 13 ~~~~~C~IC~~~~~~p--~~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~ 64 (72)
T 2djb_A 13 TPYILCSICKGYLIDA--TTITE-CLHTFCKSCIVRHFYYSNRCPKCNIVVHQTQ 64 (72)
T ss_dssp CGGGSCTTTSSCCSSC--EECSS-SCCEECHHHHHHHHHHCSSCTTTCCCCCSSC
T ss_pred CCCCCCCCCChHHHCc--CEECC-CCCHHHHHHHHHHHHcCCcCCCcCcccCccc
Confidence 3457899999999873 33345 9999999999999999999999999987543
No 18
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.28 E-value=1.9e-12 Score=94.95 Aligned_cols=48 Identities=31% Similarity=0.816 Sum_probs=42.1
Q ss_pred CCcccccccccccCCcceEEecCCCccccHHHHHHHHhcCCCCcccccccc
Q 048010 109 GALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLA 159 (320)
Q Consensus 109 ~~~~C~ICl~~~~~~~~~r~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~ 159 (320)
...+|+||++.+.+. ...++ |||.||..||..|++.+.+||+||.++.
T Consensus 4 ~~~~C~IC~~~~~~~--~~~~~-C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~ 51 (68)
T 1chc_A 4 VAERCPICLEDPSNY--SMALP-CLHAFCYVCITRWIRQNPTCPLCKVPVE 51 (68)
T ss_dssp CCCCCSSCCSCCCSC--EEETT-TTEEESTTHHHHHHHHSCSTTTTCCCCC
T ss_pred CCCCCeeCCccccCC--cEecC-CCCeeHHHHHHHHHhCcCcCcCCChhhH
Confidence 456899999998753 46676 9999999999999999999999999885
No 19
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.26 E-value=4.4e-12 Score=97.23 Aligned_cols=53 Identities=26% Similarity=0.770 Sum_probs=44.9
Q ss_pred CCCcccccccccccCCcc-eEEecCCCccccHHHHHHHHhcC---CCCccccccccCC
Q 048010 108 KGALECAVCLNEFEDDET-LRLIPKCDHVFHPECIDAWLESH---TTCPVCRSNLASE 161 (320)
Q Consensus 108 ~~~~~C~ICl~~~~~~~~-~r~lp~C~H~FH~~Ci~~Wl~~~---~~CP~CR~~l~~~ 161 (320)
.+..+|+||++.|.+.+. .++++ |||.||..||..|++.+ ..||+||..+...
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 69 (88)
T 2ct2_A 13 REVLECPICMESFTEEQLRPKLLH-CGHTICRQCLEKLLASSINGVRCPFCSKITRIT 69 (88)
T ss_dssp CSCCBCTTTCCBCCTTSSCEEECS-SSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCS
T ss_pred cCCCCCccCCccccccCCCeEECC-CCChhhHHHHHHHHHcCCCCcCCCCCCCcccch
Confidence 356789999999998765 66776 99999999999999875 7999999987643
No 20
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.24 E-value=3e-12 Score=95.00 Aligned_cols=48 Identities=29% Similarity=0.654 Sum_probs=41.8
Q ss_pred CCcccccccccccCCcceEEecCCCccccHHHHHHHHhcCCCCccccccccC
Q 048010 109 GALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLAS 160 (320)
Q Consensus 109 ~~~~C~ICl~~~~~~~~~r~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~ 160 (320)
+..+|+||++.|.+. ..++ |+|+||..||..|+..+.+||+||..+..
T Consensus 14 ~~~~C~IC~~~~~~~---~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 61 (71)
T 2d8t_A 14 TVPECAICLQTCVHP---VSLP-CKHVFCYLCVKGASWLGKRCALCRQEIPE 61 (71)
T ss_dssp SCCBCSSSSSBCSSE---EEET-TTEEEEHHHHHHCTTCSSBCSSSCCBCCH
T ss_pred CCCCCccCCcccCCC---EEcc-CCCHHHHHHHHHHHHCCCcCcCcCchhCH
Confidence 457899999998763 4556 99999999999999999999999998864
No 21
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.24 E-value=5.1e-12 Score=95.59 Aligned_cols=51 Identities=20% Similarity=0.562 Sum_probs=42.9
Q ss_pred CCcccccccccccCCcceEEecCCCccccHHHHHHHHhcC--CCCccccccccCCC
Q 048010 109 GALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESH--TTCPVCRSNLASEP 162 (320)
Q Consensus 109 ~~~~C~ICl~~~~~~~~~r~lp~C~H~FH~~Ci~~Wl~~~--~~CP~CR~~l~~~~ 162 (320)
...+|+||++.|..++... .|+|.||..||++||+++ .+||+||+++....
T Consensus 14 ~i~~C~IC~~~i~~g~~C~---~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~~~ 66 (74)
T 2ct0_A 14 AVKICNICHSLLIQGQSCE---TCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHEI 66 (74)
T ss_dssp SSCBCSSSCCBCSSSEECS---SSCCEECHHHHHHHSTTCSSCCCTTTCSCCCSCC
T ss_pred CCCcCcchhhHcccCCccC---CCCchhhHHHHHHHHHhcCCCCCCCCcCcCCCCC
Confidence 4568999999999775443 599999999999999887 89999999886443
No 22
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.19 E-value=1.3e-11 Score=91.62 Aligned_cols=50 Identities=26% Similarity=0.681 Sum_probs=41.2
Q ss_pred CCCcccccccccccCCcceEEecCCCccccHHHHHHHHh---cCCCCccccccccCC
Q 048010 108 KGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLE---SHTTCPVCRSNLASE 161 (320)
Q Consensus 108 ~~~~~C~ICl~~~~~~~~~r~lp~C~H~FH~~Ci~~Wl~---~~~~CP~CR~~l~~~ 161 (320)
....+|+||++.|.+ ...++ |||.||..||..|++ .+..||+||.++...
T Consensus 18 ~~~~~C~IC~~~~~~---~~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 70 (73)
T 2ysl_A 18 QEEVICPICLDILQK---PVTID-CGHNFCLKCITQIGETSCGFFKCPLCKTSVRKN 70 (73)
T ss_dssp CCCCBCTTTCSBCSS---EEECT-TCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCC
T ss_pred ccCCEeccCCcccCC---eEEcC-CCChhhHHHHHHHHHcCCCCCCCCCCCCcCCcc
Confidence 356789999999986 34455 999999999999996 456899999988643
No 23
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.17 E-value=1.7e-11 Score=93.16 Aligned_cols=48 Identities=19% Similarity=0.571 Sum_probs=41.6
Q ss_pred CCCcccccccccccCCcceEEecCCCccccHHHHHHHHhcCCCCcccccccc
Q 048010 108 KGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLA 159 (320)
Q Consensus 108 ~~~~~C~ICl~~~~~~~~~r~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~ 159 (320)
....+|+||++.|.+. .+++ |+|.||..||..|++....||+||..+.
T Consensus 13 ~~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (81)
T 2csy_A 13 EIPFRCFICRQAFQNP---VVTK-CRHYFCESCALEHFRATPRCYICDQPTG 60 (81)
T ss_dssp CCCSBCSSSCSBCCSE---EECT-TSCEEEHHHHHHHHHHCSBCSSSCCBCC
T ss_pred CCCCCCcCCCchhcCe---eEcc-CCCHhHHHHHHHHHHCCCcCCCcCcccc
Confidence 3457899999999763 3566 9999999999999999999999999885
No 24
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.16 E-value=1.4e-11 Score=103.25 Aligned_cols=47 Identities=32% Similarity=0.936 Sum_probs=41.2
Q ss_pred CcccccccccccCCcceEEecCCCccccHHHHHHHHhcCCCCccccccccC
Q 048010 110 ALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLAS 160 (320)
Q Consensus 110 ~~~C~ICl~~~~~~~~~r~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~ 160 (320)
...|+||++.|.+ ..++| |||.||..||..|+..+.+||+||.++..
T Consensus 53 ~~~C~iC~~~~~~---~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 99 (138)
T 4ayc_A 53 ELQCIICSEYFIE---AVTLN-CAHSFCSYCINEWMKRKIECPICRKDIKS 99 (138)
T ss_dssp HSBCTTTCSBCSS---EEEET-TSCEEEHHHHHHHTTTCSBCTTTCCBCCC
T ss_pred cCCCcccCcccCC---ceECC-CCCCccHHHHHHHHHcCCcCCCCCCcCCC
Confidence 4579999999976 34566 99999999999999999999999998853
No 25
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.16 E-value=2.1e-11 Score=89.02 Aligned_cols=50 Identities=22% Similarity=0.599 Sum_probs=41.7
Q ss_pred CCCcccccccccccCCcceEEecCCCccccHHHHHHHH-hcCCCCccccccccCC
Q 048010 108 KGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWL-ESHTTCPVCRSNLASE 161 (320)
Q Consensus 108 ~~~~~C~ICl~~~~~~~~~r~lp~C~H~FH~~Ci~~Wl-~~~~~CP~CR~~l~~~ 161 (320)
.+...|+||++.+.+... ++ |||.||..||..|+ .....||+||.++...
T Consensus 13 ~~~~~C~IC~~~~~~p~~---~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 63 (66)
T 2ecy_A 13 EDKYKCEKCHLVLCSPKQ---TE-CGHRFCESCMAALLSSSSPKCTACQESIVKD 63 (66)
T ss_dssp CCCEECTTTCCEESSCCC---CS-SSCCCCHHHHHHHHTTSSCCCTTTCCCCCTT
T ss_pred CcCCCCCCCChHhcCeeE---CC-CCCHHHHHHHHHHHHhCcCCCCCCCcCCChh
Confidence 356789999999987644 45 99999999999999 4567999999988643
No 26
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.15 E-value=1.5e-11 Score=100.69 Aligned_cols=53 Identities=26% Similarity=0.805 Sum_probs=45.0
Q ss_pred CCCcccccccccccCC----cceEEecCCCccccHHHHHHHHhcCCCCccccccccCC
Q 048010 108 KGALECAVCLNEFEDD----ETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLASE 161 (320)
Q Consensus 108 ~~~~~C~ICl~~~~~~----~~~r~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~~ 161 (320)
.+..+|+||++.|.++ +.+..++ |||.||..||..|++.+.+||+||+.+...
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 61 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINHK 61 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEET-TCCEEEHHHHHHHHTTCSBCTTTCCBCTTT
T ss_pred CCCCCCcccChhhhCccccccCeEecC-CCChhhHHHHHHHHHhCCCCCCCCCcCccc
Confidence 3567899999999864 4456776 999999999999999999999999988643
No 27
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.12 E-value=2.3e-11 Score=91.12 Aligned_cols=48 Identities=33% Similarity=0.720 Sum_probs=39.9
Q ss_pred CCcccccccccccCCcceEEecCCCccccHHHHHHHHhcC--CCCcccccccc
Q 048010 109 GALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESH--TTCPVCRSNLA 159 (320)
Q Consensus 109 ~~~~C~ICl~~~~~~~~~r~lp~C~H~FH~~Ci~~Wl~~~--~~CP~CR~~l~ 159 (320)
....|+||++.|.+.. .++.|||.||..||..|++.+ ..||+||+++.
T Consensus 14 ~~~~C~IC~~~~~~p~---~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 63 (74)
T 2yur_A 14 DELLCLICKDIMTDAV---VIPCCGNSYCDECIRTALLESDEHTCPTCHQNDV 63 (74)
T ss_dssp GGGSCSSSCCCCTTCE---ECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSC
T ss_pred CCCCCcCCChHHhCCe---EcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCC
Confidence 4578999999998753 354599999999999999865 68999999754
No 28
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.12 E-value=2.8e-11 Score=99.01 Aligned_cols=53 Identities=26% Similarity=0.805 Sum_probs=44.4
Q ss_pred CCCcccccccccccCC----cceEEecCCCccccHHHHHHHHhcCCCCccccccccCC
Q 048010 108 KGALECAVCLNEFEDD----ETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLASE 161 (320)
Q Consensus 108 ~~~~~C~ICl~~~~~~----~~~r~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~~ 161 (320)
.+..+|+||++.|.+. .....++ |||+||..||+.|++.+.+||+||.++...
T Consensus 70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 126 (133)
T 4ap4_A 70 SGTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINHK 126 (133)
T ss_dssp SSSCBCTTTCCBHHHHHHTTCCEEEET-TSBEEEHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred CCCCCCCCCCCccccccccCcceEeCC-CCChhhHHHHHHHHHcCCCCCCCCCcCChh
Confidence 4567899999999863 3345665 999999999999999999999999998643
No 29
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.10 E-value=7.4e-11 Score=89.36 Aligned_cols=48 Identities=31% Similarity=0.718 Sum_probs=41.2
Q ss_pred CCcccccccccccCCcceEEecCCCccccHHHHHHHHhc------CCCCccccccccC
Q 048010 109 GALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLES------HTTCPVCRSNLAS 160 (320)
Q Consensus 109 ~~~~C~ICl~~~~~~~~~r~lp~C~H~FH~~Ci~~Wl~~------~~~CP~CR~~l~~ 160 (320)
...+|+||++.|.+.. +++ |+|.||..||..|+.. ...||+||..+..
T Consensus 18 ~~~~C~IC~~~~~~p~---~~~-CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecw_A 18 EEVTCPICLELLKEPV---SAD-CNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPF 71 (85)
T ss_dssp TTTSCTTTCSCCSSCE---ECT-TSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCT
T ss_pred cCCCCcCCChhhCcce---eCC-CCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCH
Confidence 4578999999998753 566 9999999999999987 6789999998864
No 30
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.10 E-value=5.6e-11 Score=86.50 Aligned_cols=50 Identities=20% Similarity=0.555 Sum_probs=40.4
Q ss_pred Ccccccccc-cccCCcce-EEecCCCccccHHHHHHHHhc-CCCCccccccccC
Q 048010 110 ALECAVCLN-EFEDDETL-RLIPKCDHVFHPECIDAWLES-HTTCPVCRSNLAS 160 (320)
Q Consensus 110 ~~~C~ICl~-~~~~~~~~-r~lp~C~H~FH~~Ci~~Wl~~-~~~CP~CR~~l~~ 160 (320)
...|+||++ .|.+.... .+++ |||.||..||..|+.. ...||+||..+..
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 55 (65)
T 1g25_A 3 DQGCPRCKTTKYRNPSLKLMVNV-CGHTLCESCVDLLFVRGAGNCPECGTPLRK 55 (65)
T ss_dssp TTCCSTTTTHHHHCSSCCEEECT-TCCCEEHHHHHHHHHTTSSSCTTTCCCCSS
T ss_pred CCcCCcCCCCccCCCccCeecCC-CCCHhHHHHHHHHHHcCCCcCCCCCCcccc
Confidence 467999999 78776544 3455 9999999999999754 5689999998864
No 31
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.09 E-value=4.9e-11 Score=94.51 Aligned_cols=49 Identities=27% Similarity=0.722 Sum_probs=40.7
Q ss_pred CCcccccccccccCCcceEEecCCCccccHHHHHHHHhcC-CCCccccccccC
Q 048010 109 GALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESH-TTCPVCRSNLAS 160 (320)
Q Consensus 109 ~~~~C~ICl~~~~~~~~~r~lp~C~H~FH~~Ci~~Wl~~~-~~CP~CR~~l~~ 160 (320)
+...|+||++.|.+. +..++ |||.||..||..|++.. ..||+||.++..
T Consensus 21 ~~~~C~IC~~~~~~p--~~~~~-CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~ 70 (100)
T 3lrq_A 21 EVFRCFICMEKLRDA--RLCPH-CSKLCCFSCIRRWLTEQRAQCPHCRAPLQL 70 (100)
T ss_dssp HHTBCTTTCSBCSSE--EECTT-TCCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred CCCCCccCCccccCc--cccCC-CCChhhHHHHHHHHHHCcCCCCCCCCcCCH
Confidence 346899999999863 32255 99999999999999887 699999999854
No 32
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.07 E-value=1.7e-10 Score=87.41 Aligned_cols=49 Identities=29% Similarity=0.737 Sum_probs=41.6
Q ss_pred CCcccccccccccCCcceEEecCCCccccHHHHHHHHhc------CCCCccccccccCC
Q 048010 109 GALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLES------HTTCPVCRSNLASE 161 (320)
Q Consensus 109 ~~~~C~ICl~~~~~~~~~r~lp~C~H~FH~~Ci~~Wl~~------~~~CP~CR~~l~~~ 161 (320)
+..+|+||++.|.+.. .++ |+|.||..||..|+.. ...||+||..+...
T Consensus 18 ~~~~C~IC~~~~~~p~---~~~-CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~ 72 (85)
T 2ecv_A 18 EEVTCPICLELLTQPL---SLD-CGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPE 72 (85)
T ss_dssp CCCCCTTTCSCCSSCB---CCS-SSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSS
T ss_pred CCCCCCCCCcccCCce---eCC-CCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHH
Confidence 4578999999998753 345 9999999999999977 78999999998753
No 33
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.05 E-value=1e-10 Score=92.08 Aligned_cols=48 Identities=31% Similarity=0.829 Sum_probs=40.8
Q ss_pred CcccccccccccCCcceEEecCCCccccHHHHHHHHhcCCCCccccccccC
Q 048010 110 ALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLAS 160 (320)
Q Consensus 110 ~~~C~ICl~~~~~~~~~r~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~ 160 (320)
...|+||++.|.++ ..++.|||.||..||..|+..+.+||+||..+..
T Consensus 22 ~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 69 (99)
T 2y43_A 22 LLRCGICFEYFNIA---MIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTVTE 69 (99)
T ss_dssp HTBCTTTCSBCSSE---EECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCG
T ss_pred CCCcccCChhhCCc---CEECCCCCHhhHHHHHHHHHCCCCCCCCCCcCCh
Confidence 46899999999863 3342499999999999999999999999998864
No 34
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.05 E-value=8e-11 Score=94.24 Aligned_cols=49 Identities=33% Similarity=0.722 Sum_probs=41.6
Q ss_pred CCcccccccccccCCcceEEecCCCccccHHHHHHHHhcCCCCccccccccC
Q 048010 109 GALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLAS 160 (320)
Q Consensus 109 ~~~~C~ICl~~~~~~~~~r~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~ 160 (320)
....|+||++.|.+. +.+++ |||.||..||..|+..+..||+||..+..
T Consensus 14 ~~~~C~IC~~~~~~p--~~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 62 (108)
T 2ckl_A 14 PHLMCVLCGGYFIDA--TTIIE-CLHSFCKTCIVRYLETSKYCPICDVQVHK 62 (108)
T ss_dssp GGTBCTTTSSBCSSE--EEETT-TCCEEEHHHHHHHHTSCSBCTTTCCBSCS
T ss_pred CcCCCccCChHHhCc--CEeCC-CCChhhHHHHHHHHHhCCcCcCCCccccc
Confidence 356899999999863 33346 99999999999999999999999998864
No 35
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.05 E-value=9.3e-11 Score=88.17 Aligned_cols=48 Identities=23% Similarity=0.630 Sum_probs=41.2
Q ss_pred CCcccccccccccCCcceEEecCCCccccHHHHHHHHhc-CCCCccccccccC
Q 048010 109 GALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLES-HTTCPVCRSNLAS 160 (320)
Q Consensus 109 ~~~~C~ICl~~~~~~~~~r~lp~C~H~FH~~Ci~~Wl~~-~~~CP~CR~~l~~ 160 (320)
....|+||++.|.++ .+++ |||.||..||..|++. +.+||+||.++..
T Consensus 7 ~~~~C~IC~~~~~~P---v~~~-CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~ 55 (78)
T 1t1h_A 7 EYFRCPISLELMKDP---VIVS-TGQTYERSSIQKWLDAGHKTCPKSQETLLH 55 (78)
T ss_dssp SSSSCTTTSCCCSSE---EEET-TTEEEEHHHHHHHHTTTCCBCTTTCCBCSS
T ss_pred ccCCCCCccccccCC---EEcC-CCCeecHHHHHHHHHHCcCCCCCCcCCCCh
Confidence 457899999999874 3456 9999999999999986 7899999998864
No 36
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.03 E-value=6.8e-11 Score=88.82 Aligned_cols=49 Identities=22% Similarity=0.658 Sum_probs=41.5
Q ss_pred CCCcccccccccccCCcceEEecCCCccccHHHHHHHHhc-------CCCCccccccccC
Q 048010 108 KGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLES-------HTTCPVCRSNLAS 160 (320)
Q Consensus 108 ~~~~~C~ICl~~~~~~~~~r~lp~C~H~FH~~Ci~~Wl~~-------~~~CP~CR~~l~~ 160 (320)
.+..+|+||++.|.+... ++ |||.||..||..|++. ...||+||..+..
T Consensus 10 ~~~~~C~IC~~~~~~p~~---l~-CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~ 65 (79)
T 2egp_A 10 QEEVTCPICLELLTEPLS---LD-CGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSF 65 (79)
T ss_dssp CCCCEETTTTEECSSCCC---CS-SSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCS
T ss_pred ccCCCCcCCCcccCCeeE---CC-CCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCH
Confidence 356789999999987543 55 9999999999999976 6689999998864
No 37
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.03 E-value=1.5e-10 Score=83.63 Aligned_cols=43 Identities=30% Similarity=0.748 Sum_probs=36.0
Q ss_pred CCCcccccccccccCCcceEEecCCCccccHHHHHHHHh---cCCCCccc
Q 048010 108 KGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLE---SHTTCPVC 154 (320)
Q Consensus 108 ~~~~~C~ICl~~~~~~~~~r~lp~C~H~FH~~Ci~~Wl~---~~~~CP~C 154 (320)
.+..+|+||++.|.+. ..++ |||.||..||..|++ ....||+|
T Consensus 18 ~~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 18 QEEVICPICLDILQKP---VTID-CGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCBCTTTCSBCSSC---EECT-TSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred ccCCCCCcCCchhCCe---EEeC-CCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 3567899999999864 3455 999999999999997 45689998
No 38
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=99.01 E-value=1.6e-10 Score=99.31 Aligned_cols=49 Identities=35% Similarity=0.791 Sum_probs=41.0
Q ss_pred CCcccccccccccCCcceEEecCCCccccHHHHHHHHhc-CCCCccccccccC
Q 048010 109 GALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLES-HTTCPVCRSNLAS 160 (320)
Q Consensus 109 ~~~~C~ICl~~~~~~~~~r~lp~C~H~FH~~Ci~~Wl~~-~~~CP~CR~~l~~ 160 (320)
....|+||++.|.+. +.+++ |||.||..||..|+.. +..||+||.++..
T Consensus 53 ~~~~C~IC~~~~~~p--~~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 102 (165)
T 2ckl_B 53 SELMCPICLDMLKNT--MTTKE-CLHRFCADCIITALRSGNKECPTCRKKLVS 102 (165)
T ss_dssp HHHBCTTTSSBCSSE--EEETT-TCCEEEHHHHHHHHHTTCCBCTTTCCBCCS
T ss_pred CCCCCcccChHhhCc--CEeCC-CCChhHHHHHHHHHHhCcCCCCCCCCcCCC
Confidence 346899999999863 43446 9999999999999987 7899999999854
No 39
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.99 E-value=2.2e-10 Score=80.97 Aligned_cols=43 Identities=37% Similarity=0.938 Sum_probs=35.6
Q ss_pred CCCcccccccccccCCcceEEecCCCccccHHHHHHHH---hcCCCCccc
Q 048010 108 KGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWL---ESHTTCPVC 154 (320)
Q Consensus 108 ~~~~~C~ICl~~~~~~~~~r~lp~C~H~FH~~Ci~~Wl---~~~~~CP~C 154 (320)
.+...|+||++.|.+.. +++ |+|.||..||..|+ ..+.+||+|
T Consensus 13 ~~~~~C~IC~~~~~~p~---~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 13 QVEASCSVCLEYLKEPV---IIE-CGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CCCCBCSSSCCBCSSCC---CCS-SCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred ccCCCCccCCcccCccE---eCC-CCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 34578999999998763 355 99999999999995 456789998
No 40
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=98.99 E-value=2.5e-10 Score=93.55 Aligned_cols=47 Identities=23% Similarity=0.642 Sum_probs=39.8
Q ss_pred CcccccccccccCCcceEEecCCCccccHHHHHHHHhcCC-CCccccccccC
Q 048010 110 ALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHT-TCPVCRSNLAS 160 (320)
Q Consensus 110 ~~~C~ICl~~~~~~~~~r~lp~C~H~FH~~Ci~~Wl~~~~-~CP~CR~~l~~ 160 (320)
...|+||++.|.++ ..++ |||.||..||..|+..+. .||+||.++..
T Consensus 52 ~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 52 TFQCICCQELVFRP---ITTV-CQHNVCKDCLDRSFRAQVFSCPACRYDLGR 99 (124)
T ss_dssp HTBCTTTSSBCSSE---EECT-TSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred CCCCCcCChHHcCc---EEee-CCCcccHHHHHHHHhHCcCCCCCCCccCCC
Confidence 46799999999864 3456 999999999999998544 99999999864
No 41
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=98.95 E-value=4.1e-10 Score=87.27 Aligned_cols=49 Identities=33% Similarity=0.701 Sum_probs=40.1
Q ss_pred CCCcccccccccccCCcceEEecCCCccccHHHHHHHHhcC--CCCcccccccc
Q 048010 108 KGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESH--TTCPVCRSNLA 159 (320)
Q Consensus 108 ~~~~~C~ICl~~~~~~~~~r~lp~C~H~FH~~Ci~~Wl~~~--~~CP~CR~~l~ 159 (320)
.+...|+||++.|.++. .++.|||.||..||..|+... ..||+||..+.
T Consensus 11 ~~~~~C~IC~~~~~~p~---~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 61 (92)
T 3ztg_A 11 PDELLCLICKDIMTDAV---VIPCCGNSYCDECIRTALLESDEHTCPTCHQNDV 61 (92)
T ss_dssp CTTTEETTTTEECSSCE---ECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSC
T ss_pred CcCCCCCCCChhhcCce---ECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCC
Confidence 35678999999998753 444499999999999999643 58999999874
No 42
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.92 E-value=5.6e-10 Score=89.26 Aligned_cols=48 Identities=29% Similarity=0.841 Sum_probs=40.1
Q ss_pred CcccccccccccCCcceEEecCCCccccHHHHHHHHhcCC---CCccccccccCC
Q 048010 110 ALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHT---TCPVCRSNLASE 161 (320)
Q Consensus 110 ~~~C~ICl~~~~~~~~~r~lp~C~H~FH~~Ci~~Wl~~~~---~CP~CR~~l~~~ 161 (320)
..+|+||++.|.+... ++ |||.||..||..|+..+. .||+||..+...
T Consensus 21 ~~~C~IC~~~~~~p~~---~~-CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 71 (112)
T 1jm7_A 21 ILECPICLELIKEPVS---TK-CDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKR 71 (112)
T ss_dssp HTSCSSSCCCCSSCCB---CT-TSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTT
T ss_pred CCCCcccChhhcCeEE---CC-CCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHh
Confidence 4679999999987543 45 999999999999998654 899999988643
No 43
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=98.90 E-value=8e-10 Score=94.06 Aligned_cols=48 Identities=21% Similarity=0.604 Sum_probs=40.5
Q ss_pred CcccccccccccCCcceEEecCCCccccHHHHHHHHhcCC-CCccccccccCC
Q 048010 110 ALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHT-TCPVCRSNLASE 161 (320)
Q Consensus 110 ~~~C~ICl~~~~~~~~~r~lp~C~H~FH~~Ci~~Wl~~~~-~CP~CR~~l~~~ 161 (320)
...|+||++.|.++ .+++ |||.||..||..|+.... .||+||.++...
T Consensus 78 ~~~C~IC~~~~~~p---v~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 78 SFMCVCCQELVYQP---VTTE-CFHNVCKDCLQRSFKAQVFSCPACRHDLGQN 126 (150)
T ss_dssp HTBCTTTSSBCSSE---EECT-TSCEEEHHHHHHHHHTTCCBCTTTCCBCCTT
T ss_pred CCEeecCChhhcCC---EEcC-CCCchhHHHHHHHHHhCCCcCCCCCccCCCC
Confidence 46899999999874 3356 999999999999998654 899999998754
No 44
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=98.89 E-value=5.7e-10 Score=90.76 Aligned_cols=48 Identities=29% Similarity=0.629 Sum_probs=40.7
Q ss_pred CCcccccccccccCCcceEEecCCCccccHHHHHHHHhcCC-CCccccccccC
Q 048010 109 GALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHT-TCPVCRSNLAS 160 (320)
Q Consensus 109 ~~~~C~ICl~~~~~~~~~r~lp~C~H~FH~~Ci~~Wl~~~~-~CP~CR~~l~~ 160 (320)
+...|+||++.|.++ ..++ |||.||..||..|++... +||+||.++..
T Consensus 17 ~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 65 (118)
T 3hct_A 17 SKYECPICLMALREA---VQTP-CGHRFCKACIIKSIRDAGHKCPVDNEILLE 65 (118)
T ss_dssp GGGBCTTTCSBCSSE---EECT-TSCEEEHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred CCCCCCcCChhhcCe---EECC-cCChhhHHHHHHHHhhCCCCCCCCCCCcCH
Confidence 457899999999875 3455 999999999999997655 99999998864
No 45
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=98.85 E-value=1.1e-09 Score=80.08 Aligned_cols=47 Identities=19% Similarity=0.504 Sum_probs=39.5
Q ss_pred CCcccccccccccCCcceEEe--cCCCcc-ccHHHHHHHHhcCCCCcccccccc
Q 048010 109 GALECAVCLNEFEDDETLRLI--PKCDHV-FHPECIDAWLESHTTCPVCRSNLA 159 (320)
Q Consensus 109 ~~~~C~ICl~~~~~~~~~r~l--p~C~H~-FH~~Ci~~Wl~~~~~CP~CR~~l~ 159 (320)
+..+|.||++.+.+ ..++ | |||. |+..|+..|.+.+..||+||+++.
T Consensus 7 ~~~~C~IC~~~~~~---~~~~~~p-CgH~~~C~~C~~~~~~~~~~CPiCR~~i~ 56 (64)
T 2vje_A 7 AIEPCVICQGRPKN---GCIVHGK-TGHLMACFTCAKKLKKRNKPCPVCRQPIQ 56 (64)
T ss_dssp GGSCCTTTSSSCSC---EEEEETT-EEEEEECHHHHHHHHHTTCCCTTTCCCCC
T ss_pred CcCCCCcCCCCCCC---EEEECCC-CCChhhHHHHHHHHHHcCCcCCCcCcchh
Confidence 34579999998765 3344 7 9999 899999999998899999999874
No 46
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=98.85 E-value=1.4e-09 Score=87.90 Aligned_cols=48 Identities=27% Similarity=0.618 Sum_probs=40.5
Q ss_pred CcccccccccccCCcceEEecCCCccccHHHHHHHHhc-CCCCccccccccCC
Q 048010 110 ALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLES-HTTCPVCRSNLASE 161 (320)
Q Consensus 110 ~~~C~ICl~~~~~~~~~r~lp~C~H~FH~~Ci~~Wl~~-~~~CP~CR~~l~~~ 161 (320)
...|+||++.|.++ ..++ |||.||..||..|+.. ..+||+||.++...
T Consensus 23 ~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 71 (116)
T 1rmd_A 23 SISCQICEHILADP---VETS-CKHLFCRICILRCLKVMGSYCPSCRYPCFPT 71 (116)
T ss_dssp HTBCTTTCSBCSSE---EECT-TSCEEEHHHHHHHHHHTCSBCTTTCCBCCGG
T ss_pred CCCCCCCCcHhcCc---EEcC-CCCcccHHHHHHHHhHCcCcCCCCCCCCCHh
Confidence 46799999999864 3355 9999999999999986 77999999998643
No 47
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=98.83 E-value=3.4e-09 Score=80.66 Aligned_cols=54 Identities=22% Similarity=0.538 Sum_probs=41.4
Q ss_pred CCCcccccccccccCCcce-EEecCCCccccHHHHHHHHh-cCCCCccccccccCCC
Q 048010 108 KGALECAVCLNEFEDDETL-RLIPKCDHVFHPECIDAWLE-SHTTCPVCRSNLASEP 162 (320)
Q Consensus 108 ~~~~~C~ICl~~~~~~~~~-r~lp~C~H~FH~~Ci~~Wl~-~~~~CP~CR~~l~~~~ 162 (320)
++..+|+||++.+...+.. .-++ |||.||..|+..|+. ....||+||+++...+
T Consensus 9 ~~~~~CpICle~~~~~d~~~~p~~-CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~~ 64 (78)
T 1e4u_A 9 EDPVECPLCMEPLEIDDINFFPCT-CGYQICRFCWHRIRTDENGLCPACRKPYPEDP 64 (78)
T ss_dssp CCCCBCTTTCCBCCTTTTTCCSST-TSCCCCHHHHHHHTTSSCSBCTTTCCBCSSCS
T ss_pred ccCCcCCccCccCccccccccccC-CCCCcCHHHHHHHHhcCCCCCCCCCCccCCCc
Confidence 3567899999998754332 2233 999999999999984 4678999999987543
No 48
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.83 E-value=2.1e-09 Score=104.46 Aligned_cols=49 Identities=27% Similarity=0.819 Sum_probs=41.9
Q ss_pred CCcccccccccccCCcceEEecCCCccccHHHHHHHHh-cCCCCccccccccCC
Q 048010 109 GALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLE-SHTTCPVCRSNLASE 161 (320)
Q Consensus 109 ~~~~C~ICl~~~~~~~~~r~lp~C~H~FH~~Ci~~Wl~-~~~~CP~CR~~l~~~ 161 (320)
...+|+||++.+.+ ...+| |||.||..||..|+. .+.+||+||.++...
T Consensus 331 ~~~~C~ICle~~~~---pv~lp-CGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~~ 380 (389)
T 2y1n_A 331 TFQLCKICAENDKD---VKIEP-CGHLMCTSCLTSWQESEGQGCPFCRCEIKGT 380 (389)
T ss_dssp SSSBCTTTSSSBCC---EEEET-TCCEECHHHHHHHHHHTCSBCTTTCCBCCEE
T ss_pred CCCCCCccCcCCCC---eEEeC-CCChhhHHHHHHHHhcCCCCCCCCCCccCCc
Confidence 34689999999865 55676 999999999999998 688999999988654
No 49
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=98.81 E-value=1.7e-09 Score=91.18 Aligned_cols=50 Identities=22% Similarity=0.477 Sum_probs=41.5
Q ss_pred CCCcccccccccccCCcceEEecCCCccccHHHHHHHHhcCC-CCccccccccCC
Q 048010 108 KGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHT-TCPVCRSNLASE 161 (320)
Q Consensus 108 ~~~~~C~ICl~~~~~~~~~r~lp~C~H~FH~~Ci~~Wl~~~~-~CP~CR~~l~~~ 161 (320)
.....|+||++.|.++ ..++ |||.||..||..|++... +||+||.++...
T Consensus 29 ~~~~~C~IC~~~~~~p---v~~~-CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 79 (141)
T 3knv_A 29 EAKYLCSACRNVLRRP---FQAQ-CGHRYCSFCLASILSSGPQNCAACVHEGIYE 79 (141)
T ss_dssp CGGGBCTTTCSBCSSE---EECT-TSCEEEHHHHHHHGGGSCEECHHHHHTTCCC
T ss_pred CcCcCCCCCChhhcCc---EECC-CCCccCHHHHHHHHhcCCCCCCCCCCccccc
Confidence 4567899999999876 3355 999999999999998654 899999987543
No 50
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=98.80 E-value=6.4e-10 Score=89.83 Aligned_cols=47 Identities=26% Similarity=0.790 Sum_probs=39.8
Q ss_pred CcccccccccccCCcceEEecCCCccccHHHHHHHHhc-CCCCccccccccC
Q 048010 110 ALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLES-HTTCPVCRSNLAS 160 (320)
Q Consensus 110 ~~~C~ICl~~~~~~~~~r~lp~C~H~FH~~Ci~~Wl~~-~~~CP~CR~~l~~ 160 (320)
...|+||++.|.+. ..++ |||.||..||..|+.. ...||+||..+..
T Consensus 15 ~~~C~iC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 15 ECQCGICMEILVEP---VTLP-CNHTLCKPCFQSTVEKASLCCPFCRRRVSS 62 (115)
T ss_dssp HHBCTTTCSBCSSC---EECT-TSCEECHHHHCCCCCTTTSBCTTTCCBCHH
T ss_pred CCCCccCCcccCce---eEcC-CCCHHhHHHHHHHHhHCcCCCCCCCcccCc
Confidence 46799999999864 3445 9999999999999965 6789999998863
No 51
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=98.79 E-value=3.6e-09 Score=81.53 Aligned_cols=48 Identities=19% Similarity=0.160 Sum_probs=42.0
Q ss_pred CCcccccccccccCCcceEEecCCCccccHHHHHHHHhcCCCCccccccccC
Q 048010 109 GALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLAS 160 (320)
Q Consensus 109 ~~~~C~ICl~~~~~~~~~r~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~ 160 (320)
....|+||++-|.++ .+++ |||.|+..||..|+..+.+||+|+.++..
T Consensus 13 ~~~~CpI~~~~m~dP---V~~~-cGhtf~r~~I~~~l~~~~~cP~~~~~l~~ 60 (85)
T 2kr4_A 13 DEFRDPLMDTLMTDP---VRLP-SGTVMDRSIILRHLLNSPTDPFNRQMLTE 60 (85)
T ss_dssp TTTBCTTTCSBCSSE---EECT-TSCEEEHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred hheECcccCchhcCC---eECC-CCCEECHHHHHHHHhcCCCCCCCcCCCCh
Confidence 457899999999985 3456 99999999999999989999999998753
No 52
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=98.76 E-value=1.3e-09 Score=103.88 Aligned_cols=53 Identities=25% Similarity=0.672 Sum_probs=41.4
Q ss_pred CCCcccccccccccCCcce----EEecCCCccccHHHHHHHHhcC-----------CCCccccccccC
Q 048010 108 KGALECAVCLNEFEDDETL----RLIPKCDHVFHPECIDAWLESH-----------TTCPVCRSNLAS 160 (320)
Q Consensus 108 ~~~~~C~ICl~~~~~~~~~----r~lp~C~H~FH~~Ci~~Wl~~~-----------~~CP~CR~~l~~ 160 (320)
++..+|+||++.+.++..+ ...++|+|.||..||.+||++. .+||.||+++..
T Consensus 306 e~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~ 373 (381)
T 3k1l_B 306 NEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLST 373 (381)
T ss_dssp CSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEG
T ss_pred cCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCc
Confidence 4667999999999873322 2234699999999999999752 469999998864
No 53
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=98.75 E-value=3.4e-09 Score=77.15 Aligned_cols=48 Identities=17% Similarity=0.462 Sum_probs=39.1
Q ss_pred CcccccccccccCCcceEEecCCCcc-ccHHHHHHHHhcCCCCcccccccc
Q 048010 110 ALECAVCLNEFEDDETLRLIPKCDHV-FHPECIDAWLESHTTCPVCRSNLA 159 (320)
Q Consensus 110 ~~~C~ICl~~~~~~~~~r~lp~C~H~-FH~~Ci~~Wl~~~~~CP~CR~~l~ 159 (320)
..+|.||++.+.+.. +..+| |||. |+..|+..|.+....||+||+++.
T Consensus 7 ~~~C~IC~~~~~~~~-~~~~p-CgH~~~C~~C~~~~~~~~~~CPiCR~~i~ 55 (63)
T 2vje_B 7 LKPCSLCEKRPRDGN-IIHGR-TGHLVTCFHCARRLKKAGASCPICKKEIQ 55 (63)
T ss_dssp GSBCTTTSSSBSCEE-EEETT-EEEEEECHHHHHHHHHTTCBCTTTCCBCC
T ss_pred CCCCcccCCcCCCeE-EEecC-CCCHhHHHHHHHHHHHhCCcCCCcCchhh
Confidence 468999999876521 22337 9998 999999999988889999999874
No 54
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=98.74 E-value=7.1e-09 Score=82.15 Aligned_cols=48 Identities=21% Similarity=0.179 Sum_probs=41.7
Q ss_pred CCcccccccccccCCcceEEecCCC-ccccHHHHHHHHhcCCCCccccccccC
Q 048010 109 GALECAVCLNEFEDDETLRLIPKCD-HVFHPECIDAWLESHTTCPVCRSNLAS 160 (320)
Q Consensus 109 ~~~~C~ICl~~~~~~~~~r~lp~C~-H~FH~~Ci~~Wl~~~~~CP~CR~~l~~ 160 (320)
....|+||++.|.++. +++ || |.|+..||..||..+.+||+||.++..
T Consensus 21 ~~~~CpI~~~~m~dPV---~~~-cG~htf~r~cI~~~l~~~~~cP~~~~~l~~ 69 (98)
T 1wgm_A 21 DEFLDPIMSTLMCDPV---VLP-SSRVTVDRSTIARHLLSDQTDPFNRSPLTM 69 (98)
T ss_dssp TTTBCTTTCSBCSSEE---ECT-TTCCEEEHHHHHHHTTTSCBCTTTCSBCCT
T ss_pred HhcCCcCccccccCCe---ECC-CCCeEECHHHHHHHHHhCCCCCCCCCCCCh
Confidence 4578999999999853 455 99 999999999999988999999998863
No 55
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.73 E-value=3.1e-09 Score=75.34 Aligned_cols=48 Identities=27% Similarity=0.647 Sum_probs=39.5
Q ss_pred CCCcccccccccccCCcceEEecCCCccccHHHHHHHHhcCCCCccccccccCCC
Q 048010 108 KGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLASEP 162 (320)
Q Consensus 108 ~~~~~C~ICl~~~~~~~~~r~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~~~ 162 (320)
.+...|+||++.|.+. ++++ |+|.||..||..| ...||+||+.+..++
T Consensus 4 ~~~~~C~IC~~~~~~p---~~l~-CgH~fC~~Ci~~~---~~~CP~Cr~~~~~~~ 51 (56)
T 1bor_A 4 FQFLRCQQCQAEAKCP---KLLP-CLHTLCSGCLEAS---GMQCPICQAPWPLGA 51 (56)
T ss_dssp CCCSSCSSSCSSCBCC---SCST-TSCCSBTTTCSSS---SSSCSSCCSSSSCCS
T ss_pred ccCCCceEeCCccCCe---EEcC-CCCcccHHHHccC---CCCCCcCCcEeecCC
Confidence 3567899999999875 3456 9999999999885 678999999887543
No 56
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=98.73 E-value=5e-09 Score=83.30 Aligned_cols=48 Identities=17% Similarity=0.176 Sum_probs=42.0
Q ss_pred CCcccccccccccCCcceEEecCCCccccHHHHHHHHhcCCCCccccccccC
Q 048010 109 GALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLAS 160 (320)
Q Consensus 109 ~~~~C~ICl~~~~~~~~~r~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~ 160 (320)
....|+||++-|.++ .+++ |||.|+..||..|+..+.+||+||.++..
T Consensus 28 ~~~~CpI~~~~m~dP---V~~~-cGhtf~r~~I~~~l~~~~~cP~~~~~l~~ 75 (100)
T 2kre_A 28 DEFRDPLMDTLMTDP---VRLP-SGTIMDRSIILRHLLNSPTDPFNRQTLTE 75 (100)
T ss_dssp TTTBCTTTCSBCSSE---EEET-TTEEEEHHHHHHHTTSCSBCSSSCCBCCT
T ss_pred HhhCCcCccCcccCC---eECC-CCCEEchHHHHHHHHcCCCCCCCCCCCCh
Confidence 457899999999985 3455 99999999999999988999999998864
No 57
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.68 E-value=6.3e-09 Score=77.91 Aligned_cols=43 Identities=23% Similarity=0.730 Sum_probs=36.8
Q ss_pred CcccccccccccCCcceEEecCCCcc-ccHHHHHHHHhcCCCCccccccccC
Q 048010 110 ALECAVCLNEFEDDETLRLIPKCDHV-FHPECIDAWLESHTTCPVCRSNLAS 160 (320)
Q Consensus 110 ~~~C~ICl~~~~~~~~~r~lp~C~H~-FH~~Ci~~Wl~~~~~CP~CR~~l~~ 160 (320)
...|+||++.+.+ ..++| |||. ||..|+..| ..||+||.++..
T Consensus 24 ~~~C~iC~~~~~~---~~~~p-CgH~~~C~~C~~~~----~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 24 EKLCKICMDRNIA---IVFVP-CGHLVTCKQCAEAV----DKCPMCYTVITF 67 (74)
T ss_dssp HTBCTTTSSSBCC---EEEET-TCCBCCCHHHHTTC----SBCTTTCCBCSE
T ss_pred CCCCCCCCCCCCC---EEEcC-CCChhHHHHhhhcC----ccCCCcCcCccC
Confidence 4579999999876 45667 9999 999999999 889999998753
No 58
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.67 E-value=4.4e-09 Score=85.34 Aligned_cols=44 Identities=30% Similarity=0.778 Sum_probs=38.0
Q ss_pred CcccccccccccCCcceEEe-cCCCccccHHHHHHHHhcCCCCcccccccc
Q 048010 110 ALECAVCLNEFEDDETLRLI-PKCDHVFHPECIDAWLESHTTCPVCRSNLA 159 (320)
Q Consensus 110 ~~~C~ICl~~~~~~~~~r~l-p~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~ 159 (320)
...|+||++.|.++ ..+ + |||.||..||..|+. ..||+||..+.
T Consensus 22 ~~~C~IC~~~~~~p---v~~~~-CgH~fC~~Ci~~~~~--~~CP~Cr~~~~ 66 (117)
T 1jm7_B 22 LLRCSRCTNILREP---VCLGG-CEHIFCSNCVSDCIG--TGCPVCYTPAW 66 (117)
T ss_dssp TTSCSSSCSCCSSC---BCCCS-SSCCBCTTTGGGGTT--TBCSSSCCBCS
T ss_pred CCCCCCCChHhhCc---cEeCC-CCCHHHHHHHHHHhc--CCCcCCCCcCc
Confidence 46899999999875 334 5 999999999999998 88999999874
No 59
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=98.60 E-value=2.9e-08 Score=71.79 Aligned_cols=48 Identities=23% Similarity=0.637 Sum_probs=37.1
Q ss_pred CCCcccccccccccCCcceEEecCCC--c---cccHHHHHHHHhc--CCCCcccccccc
Q 048010 108 KGALECAVCLNEFEDDETLRLIPKCD--H---VFHPECIDAWLES--HTTCPVCRSNLA 159 (320)
Q Consensus 108 ~~~~~C~ICl~~~~~~~~~r~lp~C~--H---~FH~~Ci~~Wl~~--~~~CP~CR~~l~ 159 (320)
.+...|.||+++.. +.+ ++| |. | .||..||+.|+.. +.+||+|+..+.
T Consensus 4 ~~~~~CrIC~~~~~--~~l-~~P-C~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~ 58 (60)
T 1vyx_A 4 EDVPVCWICNEELG--NER-FRA-CGCTGELENVHRSCLSTWLTISRNTACQICGVVYN 58 (60)
T ss_dssp CSCCEETTTTEECS--CCC-CCS-CCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCCEeEEeecCCC--Cce-ecC-cCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence 35578999999843 334 466 55 4 9999999999964 678999998774
No 60
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.55 E-value=3.5e-08 Score=77.23 Aligned_cols=48 Identities=21% Similarity=0.540 Sum_probs=38.6
Q ss_pred CCcccccccccccCCcceEEecCCCccccHHHHHHHHhcC------CCCcc--cccc-cc
Q 048010 109 GALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESH------TTCPV--CRSN-LA 159 (320)
Q Consensus 109 ~~~~C~ICl~~~~~~~~~r~lp~C~H~FH~~Ci~~Wl~~~------~~CP~--CR~~-l~ 159 (320)
....|+||++.|.++ .+++.|||.|+..||..|+..+ .+||+ |+.. +.
T Consensus 6 ~~~~CPI~~~~~~dP---V~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~ 62 (94)
T 2yu4_A 6 SGFTCPITKEEMKKP---VKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIR 62 (94)
T ss_dssp SCCBCTTTCSBCSSE---EEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBC
T ss_pred cEeECcCcCchhcCC---EEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccC
Confidence 457899999999974 3343499999999999999753 48999 9866 53
No 61
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.55 E-value=2.4e-08 Score=85.87 Aligned_cols=49 Identities=29% Similarity=0.630 Sum_probs=40.9
Q ss_pred CCCcccccccccccCCcceEEecCCCccccHHHHHHHHhcC-CCCccccccccC
Q 048010 108 KGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESH-TTCPVCRSNLAS 160 (320)
Q Consensus 108 ~~~~~C~ICl~~~~~~~~~r~lp~C~H~FH~~Ci~~Wl~~~-~~CP~CR~~l~~ 160 (320)
.+.+.|+||++.|.++ ..++ |||.||..||..|+... .+||+||.++..
T Consensus 16 ~~~~~C~IC~~~~~~p---v~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 65 (170)
T 3hcs_A 16 ESKYECPICLMALREA---VQTP-CGHRFCKACIIKSIRDAGHKCPVDNEILLE 65 (170)
T ss_dssp CGGGBCTTTCSBCSSE---EECT-TSCEEEHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred CCCCCCCCCChhhcCc---EECC-CCCHHHHHHHHHHHHhCCCCCCCCccCcch
Confidence 3567899999999875 3455 99999999999999764 499999998864
No 62
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.53 E-value=3.8e-08 Score=89.88 Aligned_cols=48 Identities=19% Similarity=0.272 Sum_probs=40.3
Q ss_pred CCcccccccccccCCcceEEecCCCccccHHHHHHHHhc-CCCCccccccccC
Q 048010 109 GALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLES-HTTCPVCRSNLAS 160 (320)
Q Consensus 109 ~~~~C~ICl~~~~~~~~~r~lp~C~H~FH~~Ci~~Wl~~-~~~CP~CR~~l~~ 160 (320)
....|+||++.|.++ .+++ |||.||..||..|+.. +.+||+||.++..
T Consensus 207 ~~~~c~i~~~~~~dP---v~~~-~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~ 255 (281)
T 2c2l_A 207 DYLCGKISFELMREP---CITP-SGITYDRKDIEEHLQRVGHFNPVTRSPLTQ 255 (281)
T ss_dssp STTBCTTTCSBCSSE---EECS-SCCEEETTHHHHHHHHTCSSCTTTCCCCCG
T ss_pred cccCCcCcCCHhcCC---eECC-CCCEECHHHHHHHHHHCCCCCcCCCCCCch
Confidence 467899999999985 3456 9999999999999976 4569999998853
No 63
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.52 E-value=4.2e-08 Score=76.49 Aligned_cols=48 Identities=25% Similarity=0.763 Sum_probs=40.4
Q ss_pred CCcccccccccccCCcceEEecCCCccccHHHHHHHHhc--------CCCCcc--cccc
Q 048010 109 GALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLES--------HTTCPV--CRSN 157 (320)
Q Consensus 109 ~~~~C~ICl~~~~~~~~~r~lp~C~H~FH~~Ci~~Wl~~--------~~~CP~--CR~~ 157 (320)
+..+|+||++++..++.+.+.+ |+|.||.+|+..|++. ...||. |+..
T Consensus 4 ~~~~C~IC~~~~~~~~~~~l~~-CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 4 GSSGCKLCLGEYPVEQMTTIAQ-CQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp SBCCCSSSCCCCBGGGEEEETT-TTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CCcCCcccCcccccccceEcCC-CCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 4568999999998887777666 9999999999999853 237999 9987
No 64
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.45 E-value=9.9e-08 Score=70.46 Aligned_cols=44 Identities=30% Similarity=0.794 Sum_probs=37.1
Q ss_pred CCcccccccccccCCcceEEecCCCcc-ccHHHHHHHHhcCCCCccccccccC
Q 048010 109 GALECAVCLNEFEDDETLRLIPKCDHV-FHPECIDAWLESHTTCPVCRSNLAS 160 (320)
Q Consensus 109 ~~~~C~ICl~~~~~~~~~r~lp~C~H~-FH~~Ci~~Wl~~~~~CP~CR~~l~~ 160 (320)
+..+|.||++.+.+ +.++| |+|. |+..|+.. ...||+||.++..
T Consensus 14 ~~~~C~IC~~~~~~---~v~~p-CgH~~~C~~C~~~----~~~CP~CR~~i~~ 58 (68)
T 2ea5_A 14 NSKDCVVCQNGTVN---WVLLP-CRHTCLCDGCVKY----FQQCPMCRQFVQE 58 (68)
T ss_dssp CSSCCSSSSSSCCC---CEETT-TTBCCSCTTHHHH----CSSCTTTCCCCCC
T ss_pred CCCCCCCcCcCCCC---EEEEC-CCChhhhHHHHhc----CCCCCCCCcchhc
Confidence 45789999998765 66787 9999 99999984 5789999998864
No 65
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.45 E-value=5.7e-08 Score=72.71 Aligned_cols=43 Identities=23% Similarity=0.735 Sum_probs=35.2
Q ss_pred CcccccccccccCCcceEEecCCCcc-ccHHHHHHHHhcCCCCccccccccC
Q 048010 110 ALECAVCLNEFEDDETLRLIPKCDHV-FHPECIDAWLESHTTCPVCRSNLAS 160 (320)
Q Consensus 110 ~~~C~ICl~~~~~~~~~r~lp~C~H~-FH~~Ci~~Wl~~~~~CP~CR~~l~~ 160 (320)
..+|+||++.+.+ ..++| |||. ||..|+.. ...||+||.++..
T Consensus 25 ~~~C~IC~~~~~~---~~~~p-CgH~~~C~~C~~~----~~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 25 EKLCKICMDRNIA---IVFVP-CGHLVTCKQCAEA----VDKCPMCYTVITF 68 (75)
T ss_dssp HHSCSSSCSSCCC---BCCSS-SCCCCBCHHHHHH----CSBCTTTCCBCCC
T ss_pred CCCCCcCCCCCCC---EEEec-CCCHHHHHHHhhC----CCCCccCCceecC
Confidence 3579999999876 34566 9999 99999965 4789999998864
No 66
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.38 E-value=1.2e-07 Score=72.07 Aligned_cols=43 Identities=35% Similarity=0.790 Sum_probs=36.4
Q ss_pred CcccccccccccCCcceEEecCCCcc-ccHHHHHHHHhcCCCCccccccccC
Q 048010 110 ALECAVCLNEFEDDETLRLIPKCDHV-FHPECIDAWLESHTTCPVCRSNLAS 160 (320)
Q Consensus 110 ~~~C~ICl~~~~~~~~~r~lp~C~H~-FH~~Ci~~Wl~~~~~CP~CR~~l~~ 160 (320)
...|.||++.+.+ ..++| |||. |+..|+..| ..||+||.++..
T Consensus 18 ~~~C~IC~~~~~~---~v~~p-CgH~~~C~~C~~~~----~~CP~Cr~~i~~ 61 (79)
T 2yho_A 18 AMLCMVCCEEEIN---STFCP-CGHTVCCESCAAQL----QSCPVCRSRVEH 61 (79)
T ss_dssp HTBCTTTSSSBCC---EEEET-TCBCCBCHHHHTTC----SBCTTTCCBCCE
T ss_pred CCEeEEeCcccCc---EEEEC-CCCHHHHHHHHHhc----CcCCCCCchhhC
Confidence 3579999998765 56777 9999 999999987 499999998864
No 67
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=98.35 E-value=2.3e-07 Score=81.24 Aligned_cols=48 Identities=19% Similarity=0.259 Sum_probs=40.2
Q ss_pred CCcccccccccccCCcceEEecCCCccccHHHHHHHHhcC-CCCccccccccC
Q 048010 109 GALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESH-TTCPVCRSNLAS 160 (320)
Q Consensus 109 ~~~~C~ICl~~~~~~~~~r~lp~C~H~FH~~Ci~~Wl~~~-~~CP~CR~~l~~ 160 (320)
....|+||++-|.++ .+++ |||.|+..||..|+..+ .+||+|+.++..
T Consensus 105 ~~f~CPI~~elm~DP---V~~~-~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~ 153 (179)
T 2f42_A 105 DYLCGKISFELMREP---CITP-SGITYDRKDIEEHLQRVGHFDPVTRSPLTQ 153 (179)
T ss_dssp GGGBCTTTCSBCSSE---EECT-TSCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred HhhcccCccccCCCC---eECC-CCCEECHHHHHHHHHhCCCCCCCCcCCCCh
Confidence 567899999999984 3445 99999999999999764 479999998753
No 68
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=98.27 E-value=4.5e-07 Score=65.61 Aligned_cols=48 Identities=19% Similarity=0.361 Sum_probs=41.0
Q ss_pred cccccccccccCCcceEEecCCCccccHHHHHHHHhcCCCCccccccccCC
Q 048010 111 LECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLASE 161 (320)
Q Consensus 111 ~~C~ICl~~~~~~~~~r~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~~ 161 (320)
..|+||++.|.++ .+++.|||+|...||.+||+.+.+||+++.++...
T Consensus 4 ~~CpIs~~~m~dP---V~~~~sG~~yer~~I~~~l~~~~~cP~t~~~L~~~ 51 (61)
T 2bay_A 4 MLCAISGKVPRRP---VLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSIE 51 (61)
T ss_dssp CCCTTTCSCCSSE---EEETTTTEEEEHHHHHHHHHHHSBCTTTCCBCCGG
T ss_pred EEecCCCCCCCCC---EEeCCCCcEEcHHHHHHHHHhCCCCcCCcCCCChh
Confidence 5799999999974 45534999999999999999888999999988654
No 69
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.19 E-value=3.5e-07 Score=87.81 Aligned_cols=43 Identities=30% Similarity=0.833 Sum_probs=37.1
Q ss_pred CCcccccccccccCCcceEEecCCCcc-ccHHHHHHHHhcCCCCcccccccc
Q 048010 109 GALECAVCLNEFEDDETLRLIPKCDHV-FHPECIDAWLESHTTCPVCRSNLA 159 (320)
Q Consensus 109 ~~~~C~ICl~~~~~~~~~r~lp~C~H~-FH~~Ci~~Wl~~~~~CP~CR~~l~ 159 (320)
+...|+||++.+.+ ...+| |||. ||..|+..| ..||+||.++.
T Consensus 294 ~~~~C~IC~~~~~~---~v~lp-CgH~~fC~~C~~~~----~~CP~CR~~i~ 337 (345)
T 3t6p_A 294 EERTCKVCMDKEVS---VVFIP-CGHLVVCQECAPSL----RKCPICRGIIK 337 (345)
T ss_dssp TTCBCTTTSSSBCC---EEEET-TCCEEECTTTGGGC----SBCTTTCCBCC
T ss_pred CCCCCCccCCcCCc---eEEcC-CCChhHhHHHHhcC----CcCCCCCCCcc
Confidence 45689999999876 55667 9999 999999998 78999999875
No 70
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.14 E-value=7.4e-07 Score=82.20 Aligned_cols=49 Identities=29% Similarity=0.624 Sum_probs=39.8
Q ss_pred CCcccccccccccCCcceEEecCCCccccHHHHHHHHhcC--CCCcc--ccccccC
Q 048010 109 GALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESH--TTCPV--CRSNLAS 160 (320)
Q Consensus 109 ~~~~C~ICl~~~~~~~~~r~lp~C~H~FH~~Ci~~Wl~~~--~~CP~--CR~~l~~ 160 (320)
....|+||++.|.++ |+.. +|||.|+..||..|++.+ .+||+ |+..+..
T Consensus 180 ~el~CPIcl~~f~DP--Vts~-~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~ 232 (267)
T 3htk_C 180 IELTCPITCKPYEAP--LISR-KCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSM 232 (267)
T ss_dssp CCSBCTTTSSBCSSE--EEES-SSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECG
T ss_pred eeeECcCccCcccCC--eeeC-CCCCcccHHHHHHHHHhCCCCCCCcccccCcCch
Confidence 446799999999875 4434 499999999999999754 47999 9997753
No 71
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=97.98 E-value=8e-06 Score=74.45 Aligned_cols=50 Identities=20% Similarity=0.588 Sum_probs=41.0
Q ss_pred CCcccccccccccCCcceEEecCCCccccHHHHHHHHhcCC--CCccccccccCC
Q 048010 109 GALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHT--TCPVCRSNLASE 161 (320)
Q Consensus 109 ~~~~C~ICl~~~~~~~~~r~lp~C~H~FH~~Ci~~Wl~~~~--~CP~CR~~l~~~ 161 (320)
...+|+||.+-...+... +.|+|.||..|+..|++.+. .||.|+.++...
T Consensus 179 ~i~~C~iC~~iv~~g~~C---~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~~ 230 (238)
T 3nw0_A 179 AVKICNICHSLLIQGQSC---ETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHE 230 (238)
T ss_dssp TCCBCTTTCSBCSSCEEC---SSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCSC
T ss_pred CCCcCcchhhHHhCCccc---CccChHHHHHHHHHHHHhCCCCCCCCCCCCCCCC
Confidence 467899999999976433 35999999999999998754 899999987544
No 72
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=97.88 E-value=9e-06 Score=64.25 Aligned_cols=44 Identities=30% Similarity=0.635 Sum_probs=37.0
Q ss_pred cccccccccCCcceEEecCCCccccHHHHHHHHh-cCCCCcccccccc
Q 048010 113 CAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLE-SHTTCPVCRSNLA 159 (320)
Q Consensus 113 C~ICl~~~~~~~~~r~lp~C~H~FH~~Ci~~Wl~-~~~~CP~CR~~l~ 159 (320)
|.+|--.+.. ..|++| |.|+|+.+|+..|.+ ..++||.|+.++.
T Consensus 4 C~~C~~Pi~i--ygRmIP-CkHvFCydCa~~~~~~~~k~Cp~C~~~V~ 48 (101)
T 3vk6_A 4 CDKCGLPIKV--YGRMIP-CKHVFCYDCAILHEKKGDKMCPGCSDPVQ 48 (101)
T ss_dssp CTTTCSBCSE--EEEEET-TCCEEEHHHHHHHHHTTCCBCTTTCCBCS
T ss_pred cCccCCCeEE--Eeeecc-ccccHHHHHHHHHHhccCCCCcCcCCeee
Confidence 7777766653 578898 999999999999985 5689999999885
No 73
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=95.81 E-value=0.0067 Score=44.25 Aligned_cols=48 Identities=21% Similarity=0.440 Sum_probs=35.1
Q ss_pred CCcccccccccccCCcceEEecCCCccccHHHHHHHHhc----CCCCccccccccC
Q 048010 109 GALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLES----HTTCPVCRSNLAS 160 (320)
Q Consensus 109 ~~~~C~ICl~~~~~~~~~r~lp~C~H~FH~~Ci~~Wl~~----~~~CP~CR~~l~~ 160 (320)
...+|.||.+. ++ +..--.|...||..|++..|.. .-.||.|.+...+
T Consensus 11 ~~~~C~vC~~~---~~-ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~~p 62 (66)
T 2lri_C 11 PGARCGVCGDG---TD-VLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGDVTP 62 (66)
T ss_dssp TTCCCTTTSCC---TT-CEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTCCCC
T ss_pred CCCCcCCCCCC---Ce-EEECCCCCCceecccCCCccCcCCCCCEECccccCCCcc
Confidence 45679999753 34 4444569999999999988854 3479999876543
No 74
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=94.07 E-value=0.032 Score=43.42 Aligned_cols=48 Identities=23% Similarity=0.538 Sum_probs=38.4
Q ss_pred CCcccccccccccCCcceEEecCCCccccHHHHHHHHhcCCCCccccccccCC
Q 048010 109 GALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLASE 161 (320)
Q Consensus 109 ~~~~C~ICl~~~~~~~~~r~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~~ 161 (320)
+-..|..|+-+++. .+ . ...|.+|..|+...|.....||+|..+|...
T Consensus 27 G~~nCKsCWf~~k~--LV-~--C~dHYLCl~CLtlmL~~SdrCpIC~~pLPtk 74 (99)
T 2ko5_A 27 GPQFCKSCWFENKG--LV-E--CNNHYLCLNCLTLLLSVSNRCPICKMPLPTK 74 (99)
T ss_dssp CCCCCCSSCSCCSS--EE-E--CSSCEEEHHHHHHTCSSSSEETTTTEECCCC
T ss_pred CcccChhhccccCC--ee-e--ecchhhHHHHHHHHHhhccCCcccCCcCCcc
Confidence 45789999987653 22 1 2459999999999999999999999998654
No 75
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=92.80 E-value=0.069 Score=41.13 Aligned_cols=34 Identities=21% Similarity=0.527 Sum_probs=25.6
Q ss_pred CcccccccccccCCcceEEecCCCccccHHHHHHH
Q 048010 110 ALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAW 144 (320)
Q Consensus 110 ~~~C~ICl~~~~~~~~~r~lp~C~H~FH~~Ci~~W 144 (320)
+..|.||++++.......-+. |+|.|+..|+..|
T Consensus 3 e~~C~~C~~~~~~~av~~C~~-C~~~~C~~Cl~~~ 36 (101)
T 2jun_A 3 KVLCQFCDQDPAQDAVKTCVT-CEVSYCDECLKAT 36 (101)
T ss_dssp CCBCTTCCSSSCCBCCEEETT-TTEEECHHHHHHH
T ss_pred CCCCcCCCCCCCCCceEECCc-CChHHhHHHCHHH
Confidence 467999998754433444465 9999999999984
No 76
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=89.26 E-value=0.083 Score=37.64 Aligned_cols=49 Identities=22% Similarity=0.569 Sum_probs=34.9
Q ss_pred CCcccccccccccCCcceEEecCCCccccHHHHHHHHh-----cCCCCcccccc
Q 048010 109 GALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLE-----SHTTCPVCRSN 157 (320)
Q Consensus 109 ~~~~C~ICl~~~~~~~~~r~lp~C~H~FH~~Ci~~Wl~-----~~~~CP~CR~~ 157 (320)
+...|+||...+.++.....--.|..-||..|+..-.. ....||.|+..
T Consensus 5 e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~k 58 (64)
T 1we9_A 5 SSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNK 58 (64)
T ss_dssp SCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTT
T ss_pred CCCCCCCCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcCc
Confidence 45679999998865444434446999999999875432 35679999763
No 77
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=85.62 E-value=0.32 Score=42.22 Aligned_cols=47 Identities=28% Similarity=0.573 Sum_probs=34.2
Q ss_pred cccccccccccCCcc---eEEecCCCccccHHHHHHH------Hh-----cCCCCcccccc
Q 048010 111 LECAVCLNEFEDDET---LRLIPKCDHVFHPECIDAW------LE-----SHTTCPVCRSN 157 (320)
Q Consensus 111 ~~C~ICl~~~~~~~~---~r~lp~C~H~FH~~Ci~~W------l~-----~~~~CP~CR~~ 157 (320)
..|+||...+.+++. ....-.|..-||..|+..- +. ....||.|+..
T Consensus 3 ~~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~ 63 (183)
T 3lqh_A 3 NFCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTER 63 (183)
T ss_dssp CBCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCS
T ss_pred CcCCCCcCccCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCC
Confidence 459999999988762 4444469999999996431 11 26799999764
No 78
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=85.55 E-value=0.46 Score=33.60 Aligned_cols=45 Identities=29% Similarity=0.671 Sum_probs=32.4
Q ss_pred CCcccccccccccCCcceEEecCCCccccHHHHHHHHh----cCCCCcccccc
Q 048010 109 GALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLE----SHTTCPVCRSN 157 (320)
Q Consensus 109 ~~~~C~ICl~~~~~~~~~r~lp~C~H~FH~~Ci~~Wl~----~~~~CP~CR~~ 157 (320)
....|.||... ++ +..-..|...||..|+..-+. ..-.||.|...
T Consensus 10 ~~~~C~vC~~~---g~-ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~~ 58 (61)
T 2l5u_A 10 HQDYCEVCQQG---GE-IILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEKE 58 (61)
T ss_dssp CCSSCTTTSCC---SS-EEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGGG
T ss_pred CCCCCccCCCC---Cc-EEECCCCChhhhhhccCCCCCCCCCCceECcccccc
Confidence 45679999873 33 444446999999999998653 24479999753
No 79
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=85.48 E-value=0.21 Score=36.65 Aligned_cols=50 Identities=18% Similarity=0.422 Sum_probs=35.4
Q ss_pred CCcccccccccccCCcceEEecCCCccccHHHHHHHHh----cCCCCcccccccc
Q 048010 109 GALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLE----SHTTCPVCRSNLA 159 (320)
Q Consensus 109 ~~~~C~ICl~~~~~~~~~r~lp~C~H~FH~~Ci~~Wl~----~~~~CP~CR~~l~ 159 (320)
+...|.||..... ++.+..--.|.-.||..|+..-+. ....||.|+..+.
T Consensus 17 ~~~~C~~C~~~~~-~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~~ 70 (75)
T 2k16_A 17 QIWICPGCNKPDD-GSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIK 70 (75)
T ss_dssp EEECBTTTTBCCS-SCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHHC
T ss_pred CCcCCCCCCCCCC-CCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCchh
Confidence 4456999988754 433444446999999999987653 2457999987664
No 80
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=84.12 E-value=0.65 Score=35.38 Aligned_cols=34 Identities=24% Similarity=0.565 Sum_probs=22.9
Q ss_pred CCcccccccccccCCcceEEecCCCccccHHHHHHH
Q 048010 109 GALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAW 144 (320)
Q Consensus 109 ~~~~C~ICl~~~~~~~~~r~lp~C~H~FH~~Ci~~W 144 (320)
.+..|.||-. +..++...- ..|+-+||..|+.+-
T Consensus 14 ~D~~C~VC~~-~t~~~l~pC-RvC~RvfH~~CL~r~ 47 (89)
T 1wil_A 14 NDEMCDVCEV-WTAESLFPC-RVCTRVFHDGCLRRM 47 (89)
T ss_dssp CSCCCTTTCC-CCSSCCSSC-SSSSSCCCHHHHHHH
T ss_pred CCcccCcccc-ccccceecc-ccccccccHhhcccc
Confidence 5678999963 233332211 139999999999996
No 81
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=83.05 E-value=0.27 Score=43.11 Aligned_cols=46 Identities=37% Similarity=0.536 Sum_probs=33.8
Q ss_pred CCcccccccccccCCcceEEecCCCccccHHHHHHHHhc----CCCCccccccc
Q 048010 109 GALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLES----HTTCPVCRSNL 158 (320)
Q Consensus 109 ~~~~C~ICl~~~~~~~~~r~lp~C~H~FH~~Ci~~Wl~~----~~~CP~CR~~l 158 (320)
....|.+|... + .+.....|...||..|+.+.|.. .-.||.|+..-
T Consensus 6 ~~~~C~~C~~~---g-~ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~ 55 (207)
T 3u5n_A 6 NEDWCAVCQNG---G-DLLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDIG 55 (207)
T ss_dssp SCSSBTTTCCC---E-EEEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCCCCCCCCC---C-ceEEcCCCCCccCCccCCCCCCCCCCCCEEeCceeCcc
Confidence 45679999853 3 35555569999999999887743 34799998643
No 82
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=82.54 E-value=0.21 Score=39.47 Aligned_cols=48 Identities=27% Similarity=0.579 Sum_probs=34.7
Q ss_pred cccccccccccCCcceEEec-CCCccccHHHHHHHH----------hcCCCCccccccc
Q 048010 111 LECAVCLNEFEDDETLRLIP-KCDHVFHPECIDAWL----------ESHTTCPVCRSNL 158 (320)
Q Consensus 111 ~~C~ICl~~~~~~~~~r~lp-~C~H~FH~~Ci~~Wl----------~~~~~CP~CR~~l 158 (320)
..|.||...+.++.....-- .|.--||..|+..-- ..+..||.|+..-
T Consensus 4 ~~C~iC~~p~~~~~~mi~Cdd~C~~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~C~~~~ 62 (105)
T 2xb1_A 4 YPCGACRSEVNDDQDAILCEASCQKWFHRECTGMTESAYGLLTTEASAVWACDLCLKTK 62 (105)
T ss_dssp CBCTTTCSBCCTTSCEEECTTTTCCEEEGGGTTCCHHHHHHHHHCTTEEECCHHHHHTT
T ss_pred CCCCCCCCccCCCCCEEEecCCcccccccccCCcCHHHHHhhccCCCCCEECccccCcC
Confidence 56999999987665554443 589999999975321 1356899998754
No 83
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=82.48 E-value=0.29 Score=42.03 Aligned_cols=45 Identities=38% Similarity=0.618 Sum_probs=32.9
Q ss_pred CCcccccccccccCCcceEEecCCCccccHHHHHHHHhc----CCCCcccccc
Q 048010 109 GALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLES----HTTCPVCRSN 157 (320)
Q Consensus 109 ~~~~C~ICl~~~~~~~~~r~lp~C~H~FH~~Ci~~Wl~~----~~~CP~CR~~ 157 (320)
++..|.||... ++ +.....|.-.||..|+.+-|.. .-.||.|+..
T Consensus 3 ~~~~C~~C~~~---g~-ll~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~ 51 (184)
T 3o36_A 3 NEDWCAVCQNG---GE-LLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDL 51 (184)
T ss_dssp SCSSCTTTCCC---SS-CEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCS
T ss_pred CCCccccCCCC---Ce-eeecCCCCcccCccccCCCCCCCCCCCEECccccCc
Confidence 34679999854 44 4444569999999999887643 3479999864
No 84
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=82.20 E-value=0.36 Score=36.82 Aligned_cols=50 Identities=20% Similarity=0.503 Sum_probs=35.9
Q ss_pred CcccccccccccC-CcceEEecCCCccccHHHHHHHHh--------cCCCCcccccccc
Q 048010 110 ALECAVCLNEFED-DETLRLIPKCDHVFHPECIDAWLE--------SHTTCPVCRSNLA 159 (320)
Q Consensus 110 ~~~C~ICl~~~~~-~~~~r~lp~C~H~FH~~Ci~~Wl~--------~~~~CP~CR~~l~ 159 (320)
...|.||...-.. ++.+.+--.|...||..|+++=|. ..-.|+.|+....
T Consensus 16 ~~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~~~ 74 (88)
T 1wev_A 16 GLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQMK 74 (88)
T ss_dssp CCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHHC
T ss_pred CCcCCCCCCCCCCCCCceEECCCCCCeEcCccCCCcccccccCCCCCCeeCccccchhh
Confidence 3579999976432 245556667999999999987653 2347999977554
No 85
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=80.46 E-value=0.41 Score=37.21 Aligned_cols=46 Identities=20% Similarity=0.446 Sum_probs=31.9
Q ss_pred CCcccccccccccCCcceEEecCCCccccHHHHHHHHh---cCCCCccccc
Q 048010 109 GALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLE---SHTTCPVCRS 156 (320)
Q Consensus 109 ~~~~C~ICl~~~~~~~~~r~lp~C~H~FH~~Ci~~Wl~---~~~~CP~CR~ 156 (320)
+...| ||......+..+.- -.|.-.||..|+..=+. ....||.|+.
T Consensus 27 d~vrC-iC~~~~~~~~mi~C-d~C~~w~H~~C~~~~~~~~p~~w~C~~C~~ 75 (98)
T 2lv9_A 27 DVTRC-ICGFTHDDGYMICC-DKCSVWQHIDCMGIDRQHIPDTYLCERCQP 75 (98)
T ss_dssp CBCCC-TTSCCSCSSCEEEB-TTTCBEEETTTTTCCTTSCCSSBCCTTTSS
T ss_pred CCEEe-ECCCccCCCcEEEc-CCCCCcCcCcCCCCCccCCCCCEECCCCcC
Confidence 34568 89887766655544 46999999999876332 2357999963
No 86
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=80.38 E-value=0.64 Score=31.33 Aligned_cols=44 Identities=34% Similarity=0.780 Sum_probs=30.0
Q ss_pred ccccccccccCCcceEEecCCCccccHHHHHHHHhc----CCCCccccc
Q 048010 112 ECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLES----HTTCPVCRS 156 (320)
Q Consensus 112 ~C~ICl~~~~~~~~~r~lp~C~H~FH~~Ci~~Wl~~----~~~CP~CR~ 156 (320)
.|.||...-..++.+ .-..|...||..|+++=|.. .-.||.|+.
T Consensus 2 ~C~vC~~~~~~~~ll-~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGEDDKLI-LCDECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSCCSCCE-ECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCCCCCCCEE-ECCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 488998764444344 44469999999999764432 346999964
No 87
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=79.68 E-value=0.47 Score=37.35 Aligned_cols=47 Identities=23% Similarity=0.592 Sum_probs=32.0
Q ss_pred CCCcccccccccccCCcceEEecCCCccccHHHHHHHHh----cCCCCcccc
Q 048010 108 KGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLE----SHTTCPVCR 155 (320)
Q Consensus 108 ~~~~~C~ICl~~~~~~~~~r~lp~C~H~FH~~Ci~~Wl~----~~~~CP~CR 155 (320)
.++..|.||.+.-+..+.+ .-..|...||..|++..+. ..-.||.|+
T Consensus 5 ~~~~~C~~C~~~g~~~~ll-~C~~C~~~~H~~Cl~~~~~~~~~~~W~C~~C~ 55 (111)
T 2ysm_A 5 SSGANCAVCDSPGDLLDQF-FCTTCGQHYHGMCLDIAVTPLKRAGWQCPECK 55 (111)
T ss_dssp CCCSCBTTTCCCCCTTTSE-ECSSSCCEECTTTTTCCCCTTTSTTCCCTTTC
T ss_pred CCCCCCcCCCCCCCCcCCe-ECCCCCCCcChHHhCCccccccccCccCCcCC
Confidence 4567899998874333334 3346999999999998764 233577664
No 88
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=79.65 E-value=1.2 Score=33.01 Aligned_cols=48 Identities=21% Similarity=0.527 Sum_probs=32.3
Q ss_pred CcccccccccccCCcceEEecCCCccccHHHHHHHHh-----cCCCCccccccc
Q 048010 110 ALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLE-----SHTTCPVCRSNL 158 (320)
Q Consensus 110 ~~~C~ICl~~~~~~~~~r~lp~C~H~FH~~Ci~~Wl~-----~~~~CP~CR~~l 158 (320)
..-| ||...+.++.....--.|..-||..|+..--. ....||.|+...
T Consensus 12 ~~~C-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~ 64 (79)
T 1wep_A 12 PVYC-LCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVF 64 (79)
T ss_dssp CCCS-TTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTS
T ss_pred ccEE-EcCCccCCCCceEEcCCCCCcEEeeecCcccccccCCCeEECCCccccc
Confidence 3457 89988764433333446999999999864321 355899998754
No 89
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=78.90 E-value=0.66 Score=33.99 Aligned_cols=50 Identities=18% Similarity=0.503 Sum_probs=34.7
Q ss_pred CCCcccccccccc-cCCcceEEecCCCccccHHHHHHHH--hcCCCCcccccc
Q 048010 108 KGALECAVCLNEF-EDDETLRLIPKCDHVFHPECIDAWL--ESHTTCPVCRSN 157 (320)
Q Consensus 108 ~~~~~C~ICl~~~-~~~~~~r~lp~C~H~FH~~Ci~~Wl--~~~~~CP~CR~~ 157 (320)
.....|.||.+.- .+++.+..--.|.-.||..|+..-. +..-.||.|+..
T Consensus 14 ~~~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~~~vP~g~W~C~~C~~~ 66 (71)
T 2ku3_A 14 DEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQS 66 (71)
T ss_dssp CSSCSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTCSSCCSSCCCCHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCCCccccccCCCCcCCCCCcCCccCcCc
Confidence 3457899998764 3444555656799999999998543 234479999653
No 90
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=78.64 E-value=0.74 Score=33.79 Aligned_cols=48 Identities=23% Similarity=0.535 Sum_probs=33.0
Q ss_pred CcccccccccccCCcceEEecCCCccccHHHHHHHH---------hcCCCCcccccccc
Q 048010 110 ALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWL---------ESHTTCPVCRSNLA 159 (320)
Q Consensus 110 ~~~C~ICl~~~~~~~~~r~lp~C~H~FH~~Ci~~Wl---------~~~~~CP~CR~~l~ 159 (320)
..-| ||......+..+.-- .|..-||..|+..-. .....||.|+..-.
T Consensus 16 ~~~C-~C~~~~~~~~MI~Cd-~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~~~~ 72 (76)
T 1wem_A 16 ALYC-ICRQPHNNRFMICCD-RCEEWFHGDCVGISEARGRLLERNGEDYICPNCTILSG 72 (76)
T ss_dssp CCCS-TTCCCCCSSCEEECS-SSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHHSC
T ss_pred CCEE-ECCCccCCCCEEEeC-CCCCcEeCeEEccchhhhhhccCCCCeEECcCCcCccC
Confidence 3457 898887654555444 599999999985322 24678999976543
No 91
>1nla_A Transcriptional repressor ARC; 3(10) helix, beta-ribbon, beta-sheet, structural switching; NMR {Enterobacteria phage P22} SCOP: a.43.1.1
Probab=78.23 E-value=1.2 Score=32.12 Aligned_cols=19 Identities=21% Similarity=0.310 Sum_probs=16.4
Q ss_pred CCcccccccCcHHHHHHHH
Q 048010 250 EDTERFTLRLPVDVRKQIM 268 (320)
Q Consensus 250 ~~~~r~tlrLpe~v~~~~~ 268 (320)
.+..+|+||||+++++++.
T Consensus 5 ~~~~~f~lRlp~eLh~~l~ 23 (64)
T 1nla_A 5 SKMPQFLNRWPREVLDLVR 23 (64)
T ss_dssp CCCCGGGGSSCHHHHHHHH
T ss_pred ccCCceEeeCCHHHHHHHH
Confidence 3467999999999998877
No 92
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=78.03 E-value=0.7 Score=35.20 Aligned_cols=51 Identities=20% Similarity=0.491 Sum_probs=35.6
Q ss_pred CCcccccccccc-cCCcceEEecCCCccccHHHHHHHH--hcCCCCcccccccc
Q 048010 109 GALECAVCLNEF-EDDETLRLIPKCDHVFHPECIDAWL--ESHTTCPVCRSNLA 159 (320)
Q Consensus 109 ~~~~C~ICl~~~-~~~~~~r~lp~C~H~FH~~Ci~~Wl--~~~~~CP~CR~~l~ 159 (320)
+...|.||...- .+.+.+..-..|.-.||..|+..-+ ...-.||.|.....
T Consensus 24 ~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~vP~g~W~C~~C~~~~~ 77 (88)
T 2l43_A 24 EDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQSRA 77 (88)
T ss_dssp CCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSSCCSSCCCCHHHHHHTT
T ss_pred CCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCccCCCceECccccCccc
Confidence 457899999763 2334555555799999999998643 23447999976543
No 93
>1baz_A ARC repressor; transcription regulation; 1.90A {Enterobacteria phage P22} SCOP: a.43.1.1 PDB: 1bdv_A* 1arq_A 1arr_A 1bdt_A* 1par_A* 1myk_A 1qtg_A 1b28_A 1myl_A
Probab=77.75 E-value=1.2 Score=30.58 Aligned_cols=18 Identities=22% Similarity=0.359 Sum_probs=15.5
Q ss_pred CcccccccCcHHHHHHHH
Q 048010 251 DTERFTLRLPVDVRKQIM 268 (320)
Q Consensus 251 ~~~r~tlrLpe~v~~~~~ 268 (320)
...+||||||+++++++-
T Consensus 6 ~~~~~~lRlp~eL~~~l~ 23 (53)
T 1baz_A 6 KMPQVNLRWPREVLDLVR 23 (53)
T ss_dssp CSCEEEEECCHHHHHHHH
T ss_pred cCCeeEEECCHHHHHHHH
Confidence 456899999999998877
No 94
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=77.10 E-value=0.4 Score=33.96 Aligned_cols=45 Identities=27% Similarity=0.569 Sum_probs=31.3
Q ss_pred CCcccccccccccCCcceEEecCCCccccHHHHHHHHhc----CCCCcccccc
Q 048010 109 GALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLES----HTTCPVCRSN 157 (320)
Q Consensus 109 ~~~~C~ICl~~~~~~~~~r~lp~C~H~FH~~Ci~~Wl~~----~~~CP~CR~~ 157 (320)
....|.||.+. ++.+ .-..|...||..|+..-|.. .-.||.|...
T Consensus 8 ~~~~C~vC~~~---g~ll-~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~ 56 (61)
T 1mm2_A 8 HMEFCRVCKDG---GELL-CCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCP 56 (61)
T ss_dssp SCSSCTTTCCC---SSCB-CCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTT
T ss_pred CCCcCCCCCCC---CCEE-EcCCCCHHHcccccCCCcCcCCCCccCChhhcCc
Confidence 45679999853 3333 33458999999999865532 3469999764
No 95
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=76.80 E-value=0.73 Score=38.97 Aligned_cols=48 Identities=21% Similarity=0.563 Sum_probs=33.4
Q ss_pred CCcccccccccccCCcceEEecCCCccccHHHHHHHH-----hcCCCCcccccc
Q 048010 109 GALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWL-----ESHTTCPVCRSN 157 (320)
Q Consensus 109 ~~~~C~ICl~~~~~~~~~r~lp~C~H~FH~~Ci~~Wl-----~~~~~CP~CR~~ 157 (320)
...-| ||.....++......-.|...||..|+..-. .....||.|+..
T Consensus 7 ~~~~C-~C~~~~~~~~~mi~Cd~C~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~~ 59 (174)
T 2ri7_A 7 TKLYC-ICKTPEDESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQST 59 (174)
T ss_dssp CCEET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTCSSCCCHHHHHH
T ss_pred CCcEe-eCCCCCCCCCCEeECCCCCchhChhhcCCchhhccCccCeecCCCcch
Confidence 44678 9998876444444444699999999986322 235689999764
No 96
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=75.79 E-value=0.69 Score=36.60 Aligned_cols=45 Identities=29% Similarity=0.697 Sum_probs=31.4
Q ss_pred ccccccccccCCcceEEecCCCccccHHHHHHHHhc----CCCCccccc
Q 048010 112 ECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLES----HTTCPVCRS 156 (320)
Q Consensus 112 ~C~ICl~~~~~~~~~r~lp~C~H~FH~~Ci~~Wl~~----~~~CP~CR~ 156 (320)
.|.||...-.+++.+..--.|...||..|+++-|.. .-.||.|+.
T Consensus 63 ~C~vC~~~~~~~~~ll~Cd~C~~~yH~~Cl~p~l~~~P~~~W~C~~C~~ 111 (112)
T 3v43_A 63 TCSSCRDQGKNADNMLFCDSCDRGFHMECCDPPLTRMPKGMWICQICRP 111 (112)
T ss_dssp CBTTTCCCCCTTCCCEECTTTCCEECGGGCSSCCSSCCSSCCCCTTTSC
T ss_pred ccccccCcCCCccceEEcCCCCCeeecccCCCCCCCCCCCCeECCCCCC
Confidence 588888653333445455569999999999876543 347999974
No 97
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=75.64 E-value=0.92 Score=30.90 Aligned_cols=44 Identities=20% Similarity=0.418 Sum_probs=30.4
Q ss_pred ccccccccccCCcceEEec-CCCccccHHHHHHHH----hcCCCCcccc
Q 048010 112 ECAVCLNEFEDDETLRLIP-KCDHVFHPECIDAWL----ESHTTCPVCR 155 (320)
Q Consensus 112 ~C~ICl~~~~~~~~~r~lp-~C~H~FH~~Ci~~Wl----~~~~~CP~CR 155 (320)
.|.||...+.++.....-- .|.--||..|+..-. ..+..||.|+
T Consensus 4 ~cc~C~~p~~~~~~mI~Cd~~C~~WfH~~Cvgl~~~~~~~~~~~C~~C~ 52 (52)
T 2kgg_A 4 AAQNCQRPCKDKVDWVQCDGGCDEWFHQVCVGVSPEMAENEDYICINCA 52 (52)
T ss_dssp SCTTCCCCCCTTCCEEECTTTTCCEEETTTTTCCHHHHHHSCCCCSCC-
T ss_pred cCCCCcCccCCCCcEEEeCCCCCccCcccccCCCccccCCCCEECCCCC
Confidence 4778988886655444444 588899999976432 3567899985
No 98
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=75.06 E-value=0.9 Score=33.64 Aligned_cols=49 Identities=27% Similarity=0.518 Sum_probs=32.7
Q ss_pred CCcccccccccccCCcceEEe-cCCCccccHHHHHHHHh---------cCCCCccccccc
Q 048010 109 GALECAVCLNEFEDDETLRLI-PKCDHVFHPECIDAWLE---------SHTTCPVCRSNL 158 (320)
Q Consensus 109 ~~~~C~ICl~~~~~~~~~r~l-p~C~H~FH~~Ci~~Wl~---------~~~~CP~CR~~l 158 (320)
....| ||......+.++.-- +.|..-||..|+..--. .+..||.|+..-
T Consensus 15 ~~~~C-iC~~~~~~g~MI~CD~~~C~~W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~~~ 73 (78)
T 1wew_A 15 IKVRC-VCGNSLETDSMIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRLTS 73 (78)
T ss_dssp CCCCC-SSCCCCCCSCEEECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHHCC
T ss_pred CCEEe-ECCCcCCCCCEEEECCccCCccccCEEEccccccccccccCCCCEECCCCCccc
Confidence 44568 899885555554433 04999999999864321 356899997643
No 99
>3qoq_A Alginate and motility regulator Z; protein-DNA complex, ribbon-helix-helix; HET: DNA; 3.10A {Pseudomonas aeruginosa}
Probab=73.64 E-value=1.4 Score=32.20 Aligned_cols=19 Identities=37% Similarity=0.758 Sum_probs=16.3
Q ss_pred CCcccccccCcHHHHHHHH
Q 048010 250 EDTERFTLRLPVDVRKQIM 268 (320)
Q Consensus 250 ~~~~r~tlrLpe~v~~~~~ 268 (320)
...++|+||||++++++|-
T Consensus 17 r~~~kf~LRlP~eL~~~L~ 35 (69)
T 3qoq_A 17 RTADKFVVRLPEGMREQIA 35 (69)
T ss_dssp TTSEEEEEECCTTHHHHHH
T ss_pred ccCCceEEECCHHHHHHHH
Confidence 3458999999999998877
No 100
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=73.23 E-value=0.51 Score=33.87 Aligned_cols=45 Identities=31% Similarity=0.607 Sum_probs=32.0
Q ss_pred CCcccccccccccCCcceEEecCCCccccHHHHHHHHhc----CCCCcccccc
Q 048010 109 GALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLES----HTTCPVCRSN 157 (320)
Q Consensus 109 ~~~~C~ICl~~~~~~~~~r~lp~C~H~FH~~Ci~~Wl~~----~~~CP~CR~~ 157 (320)
.+..|.||... ++ +..-..|.-.||..|+.+-|.. .-.||.|...
T Consensus 7 ~~~~C~vC~~~---g~-ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~~ 55 (66)
T 1xwh_A 7 NEDECAVCRDG---GE-LICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQA 55 (66)
T ss_dssp CCCSBSSSSCC---SS-CEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHHT
T ss_pred CCCCCccCCCC---CC-EEEcCCCChhhcccccCCCcCcCCCCCeECccccCc
Confidence 45689999864 33 4444469999999999865532 3469999653
No 101
>2klu_A T-cell surface glycoprotein CD4; cell membrane, disulfide bond, HOST- virus interaction, immune response, immunoglobulin domain, lipoprotein; NMR {Homo sapiens}
Probab=72.68 E-value=9.3 Score=27.62 Aligned_cols=26 Identities=15% Similarity=0.304 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccCC
Q 048010 37 IIIVVLISALFFMGFFSIYIRHCSDS 62 (320)
Q Consensus 37 iiiiilv~~~~ll~~~~i~~r~c~~~ 62 (320)
|+++..+.+++|+++.+++.-+|..+
T Consensus 12 ivlGg~~~lll~~glcI~ccvkcrhR 37 (70)
T 2klu_A 12 IVLGGVAGLLLFIGLGIFFSVRSRHR 37 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSSCC
T ss_pred HHHhHHHHHHHHHHHHHHHhhHHHHH
Confidence 77888788888888777744445443
No 102
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=71.78 E-value=3.1 Score=29.80 Aligned_cols=47 Identities=28% Similarity=0.572 Sum_probs=33.2
Q ss_pred CCcccccccccccCCcceEEec-CCCccccHHHHHHHHh----------cCCCCcccc
Q 048010 109 GALECAVCLNEFEDDETLRLIP-KCDHVFHPECIDAWLE----------SHTTCPVCR 155 (320)
Q Consensus 109 ~~~~C~ICl~~~~~~~~~r~lp-~C~H~FH~~Ci~~Wl~----------~~~~CP~CR 155 (320)
....|.+|...+.+++....-- .|.--||..|+..--. .+..||.|.
T Consensus 7 ~~~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cvglt~~~~~~l~~e~~~~w~C~~C~ 64 (65)
T 2vpb_A 7 PVYPCGICTNEVNDDQDAILCEASCQKWFHRICTGMTETAYGLLTAEASAVWGCDTCM 64 (65)
T ss_dssp --CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHHHTCCHHHHHHHHHCTTEEECCHHHH
T ss_pred CcCcCccCCCccCCCCCeEecccCccccCchhccCCCHHHHHHhhccCCCcEECcCcc
Confidence 3457999999988776665655 6999999999754321 144688885
No 103
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=71.74 E-value=4.1 Score=33.83 Aligned_cols=45 Identities=22% Similarity=0.441 Sum_probs=32.4
Q ss_pred CCCcccccccccccCCcceEEecCCCccccHHHHHHHHh-----------cCCCCccccc
Q 048010 108 KGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLE-----------SHTTCPVCRS 156 (320)
Q Consensus 108 ~~~~~C~ICl~~~~~~~~~r~lp~C~H~FH~~Ci~~Wl~-----------~~~~CP~CR~ 156 (320)
..++.|.||.+. ++ +...-.|..+||..||++=|. ..-.||+|+.
T Consensus 61 g~~d~C~vC~~G---G~-LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~ 116 (142)
T 2lbm_A 61 GMDEQCRWCAEG---GN-LICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHP 116 (142)
T ss_dssp SCBCSCSSSCCC---SS-EEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCC
T ss_pred CCCCeecccCCC---Cc-EEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccC
Confidence 356789999874 33 444456999999999997652 2347999963
No 104
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=71.38 E-value=12 Score=24.91 Aligned_cols=28 Identities=14% Similarity=0.341 Sum_probs=13.3
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHh
Q 048010 30 KFSPSLAIIIVVLISALFFMGFFSIYIRH 58 (320)
Q Consensus 30 ~~~~~~~iiiiilv~~~~ll~~~~i~~r~ 58 (320)
....+.+++++++ .++++.+.+.+|+|+
T Consensus 10 ~~~~Ia~~vVGvl-l~vi~~l~~~~~~RR 37 (44)
T 2jwa_A 10 PLTSIISAVVGIL-LVVVLGVVFGILIKR 37 (44)
T ss_dssp SHHHHHHHHHHHH-HHHHHHHHHHHHHHH
T ss_pred cccchHHHHHHHH-HHHHHHHHHHhheeh
Confidence 3444555555633 333344444455554
No 105
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=71.15 E-value=0.49 Score=32.76 Aligned_cols=44 Identities=30% Similarity=0.730 Sum_probs=30.7
Q ss_pred CCcccccccccccCCcceEEecCCCccccHHHHHHHHhc----CCCCccccc
Q 048010 109 GALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLES----HTTCPVCRS 156 (320)
Q Consensus 109 ~~~~C~ICl~~~~~~~~~r~lp~C~H~FH~~Ci~~Wl~~----~~~CP~CR~ 156 (320)
....|.||... ++.+ .-..|...||..|+++=|.. .-.||.|..
T Consensus 8 ~~~~C~vC~~~---g~ll-~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~~ 55 (56)
T 2yql_A 8 HEDFCSVCRKS---GQLL-MCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 55 (56)
T ss_dssp SCCSCSSSCCS---SCCE-ECSSSSCEECSSSSSSCCCSCCCSSCCCHHHHC
T ss_pred CCCCCccCCCC---CeEE-EcCCCCcceECccCCCCcCCCCCCceEChhhhC
Confidence 45679999874 3434 44469999999999865532 336888854
No 106
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=70.82 E-value=1.9 Score=32.96 Aligned_cols=46 Identities=26% Similarity=0.629 Sum_probs=32.9
Q ss_pred CCCcccccccccccCCcceEEecCCCccccHHHHHHHHhc----CCCCcccccc
Q 048010 108 KGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLES----HTTCPVCRSN 157 (320)
Q Consensus 108 ~~~~~C~ICl~~~~~~~~~r~lp~C~H~FH~~Ci~~Wl~~----~~~CP~CR~~ 157 (320)
.....|.||... ++ +..-..|.-.||..|+++=|.. .-.||.|...
T Consensus 23 ~n~~~C~vC~~~---g~-LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~ 72 (88)
T 1fp0_A 23 DSATICRVCQKP---GD-LVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 72 (88)
T ss_dssp SSSSCCSSSCSS---SC-CEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCC
T ss_pred CCCCcCcCcCCC---CC-EEECCCCCCceecccCCCCCCCCcCCCcCCccccCC
Confidence 345689999864 33 4444468899999999876643 3479999753
No 107
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=69.92 E-value=0.55 Score=32.93 Aligned_cols=47 Identities=28% Similarity=0.699 Sum_probs=32.9
Q ss_pred CCcccccccccccCCcceEEecCCCccccHHHHHHHHhc----CCCCcccccccc
Q 048010 109 GALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLES----HTTCPVCRSNLA 159 (320)
Q Consensus 109 ~~~~C~ICl~~~~~~~~~r~lp~C~H~FH~~Ci~~Wl~~----~~~CP~CR~~l~ 159 (320)
.+..|.||... ++.+ .-..|.-.||..|+.+=|.. .-.||.|.....
T Consensus 4 ~~~~C~vC~~~---g~ll-~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~~ 54 (60)
T 2puy_A 4 HEDFCSVCRKS---GQLL-MCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQDQML 54 (60)
T ss_dssp CCSSCTTTCCC---SSCE-ECSSSSCEECGGGSSSCCSSCCCSCCCCHHHHHHHH
T ss_pred CCCCCcCCCCC---CcEE-EcCCCCcCEECCcCCCCcCCCCCCceEChhccChhh
Confidence 34679999874 3444 44469999999999865532 346999976543
No 108
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=69.32 E-value=12 Score=28.72 Aligned_cols=52 Identities=15% Similarity=0.448 Sum_probs=37.3
Q ss_pred CCccccccccccc---CCcceEEecCCCccccHHHHHHHH-hcCCCCccccccccC
Q 048010 109 GALECAVCLNEFE---DDETLRLIPKCDHVFHPECIDAWL-ESHTTCPVCRSNLAS 160 (320)
Q Consensus 109 ~~~~C~ICl~~~~---~~~~~r~lp~C~H~FH~~Ci~~Wl-~~~~~CP~CR~~l~~ 160 (320)
....|.||-+++- +++.....-.|+--.|..|.+-=. +.++.||-|...+..
T Consensus 15 ~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYkr 70 (93)
T 1weo_A 15 DGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYKR 70 (93)
T ss_dssp SSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCCC
T ss_pred CCCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCcccc
Confidence 3468999999974 333333333488888999987655 457899999998864
No 109
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=67.94 E-value=3.8 Score=43.91 Aligned_cols=48 Identities=21% Similarity=0.219 Sum_probs=40.6
Q ss_pred CCcccccccccccCCcceEEecCCC-ccccHHHHHHHHhcCCCCccccccccC
Q 048010 109 GALECAVCLNEFEDDETLRLIPKCD-HVFHPECIDAWLESHTTCPVCRSNLAS 160 (320)
Q Consensus 109 ~~~~C~ICl~~~~~~~~~r~lp~C~-H~FH~~Ci~~Wl~~~~~CP~CR~~l~~ 160 (320)
+...|+|-++-|.++ .++| .| +.|-..+|..||.++.+||+=|.++..
T Consensus 890 ~~F~cPIs~~lM~DP---Vilp-sG~~TydR~~I~~wl~~~~tdP~Tr~~L~~ 938 (968)
T 3m62_A 890 DEFLDPLMYTIMKDP---VILP-ASKMNIDRSTIKAHLLSDSTDPFNRMPLKL 938 (968)
T ss_dssp GGGBCTTTCSBCSSE---EECT-TTCCEEEHHHHHHHHTTCCBCTTTCCBCCG
T ss_pred HHhCCcchhhHHhCC---eEcC-CCCEEECHHHHHHHHhcCCCCCCCCCCCCc
Confidence 456799999999985 4556 66 689999999999999999999998864
No 110
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=67.67 E-value=0.98 Score=39.10 Aligned_cols=44 Identities=25% Similarity=0.640 Sum_probs=30.8
Q ss_pred CcccccccccccCCcceEEecCCCccccHHHHHHHHhc----CCCCcccccc
Q 048010 110 ALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLES----HTTCPVCRSN 157 (320)
Q Consensus 110 ~~~C~ICl~~~~~~~~~r~lp~C~H~FH~~Ci~~Wl~~----~~~CP~CR~~ 157 (320)
...|.+|... ++.+ ....|...||..|+++=+.. .-.||.|+..
T Consensus 2 ~~~C~~C~~~---g~ll-~Cd~C~~~~H~~Cl~p~l~~~p~g~W~C~~C~~~ 49 (189)
T 2ro1_A 2 ATICRVCQKP---GDLV-MCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 49 (189)
T ss_dssp CCCBTTTCCC---SSCC-CCTTTCCBCCSTTSTTCCSSCCCTTCCTTTTSCS
T ss_pred CCcCccCCCC---Ccee-ECCCCCchhccccCCCCcccCCCCCCCCcCccCC
Confidence 3579999854 3433 33458899999999765532 3479999765
No 111
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=67.27 E-value=0.98 Score=32.82 Aligned_cols=48 Identities=23% Similarity=0.376 Sum_probs=32.8
Q ss_pred CCcccccccccccCCcceEEecCCCccccHHHHHHHH----hcCCCCcccccc
Q 048010 109 GALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWL----ESHTTCPVCRSN 157 (320)
Q Consensus 109 ~~~~C~ICl~~~~~~~~~r~lp~C~H~FH~~Ci~~Wl----~~~~~CP~CR~~ 157 (320)
....| ||.....+++....--.|..-||..|+..-- .....||.|+..
T Consensus 15 ~~~~C-~C~~~~~~g~~mI~Cd~C~~W~H~~Cvg~~~~~~~~~~~~C~~C~~~ 66 (72)
T 1wee_A 15 WKVDC-KCGTKDDDGERMLACDGCGVWHHTRCIGINNADALPSKFLCFRCIEL 66 (72)
T ss_dssp SEECC-TTCCCSCCSSCEEECSSSCEEEETTTTTCCTTSCCCSCCCCHHHHHH
T ss_pred cceEe-eCCCccCCCCcEEECCCCCCccCCeeeccCccccCCCcEECCCccCC
Confidence 34568 7988776665344444699999999986532 234579999764
No 112
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=66.20 E-value=6.5 Score=32.09 Aligned_cols=44 Identities=23% Similarity=0.455 Sum_probs=31.1
Q ss_pred CCcccccccccccCCcceEEecCCCccccHHHHHHHH------h-----cCCCCccccc
Q 048010 109 GALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWL------E-----SHTTCPVCRS 156 (320)
Q Consensus 109 ~~~~C~ICl~~~~~~~~~r~lp~C~H~FH~~Ci~~Wl------~-----~~~~CP~CR~ 156 (320)
.+..|.||.+. -.+..-..|-.+||..||+.-+ + ..-.|++|+.
T Consensus 56 ~~~~C~vC~dG----G~LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~ 110 (129)
T 3ql9_A 56 MDEQCRWCAEG----GNLICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHP 110 (129)
T ss_dssp CBSSCTTTCCC----SEEEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCC
T ss_pred CCCcCeecCCC----CeeEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCC
Confidence 45679999864 3344445689999999999752 1 2347999954
No 113
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=64.74 E-value=7.9 Score=29.17 Aligned_cols=39 Identities=23% Similarity=0.468 Sum_probs=30.1
Q ss_pred CCcccccccccccCCcceEEecCCCccccHHHHHHHHhc
Q 048010 109 GALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLES 147 (320)
Q Consensus 109 ~~~~C~ICl~~~~~~~~~r~lp~C~H~FH~~Ci~~Wl~~ 147 (320)
....|.+|.+.+++-.-+..-..=.|.||..|-+..+++
T Consensus 14 a~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~sIk~ 52 (93)
T 2cs3_A 14 GPLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRESIKA 52 (93)
T ss_dssp CSCCCSSSCSCCSSTTSEECSSCSSCEECHHHHHHHHHH
T ss_pred CeeEeecchhhhccCceeeCCCccCCeeeccccHHHHHh
Confidence 456799999999987666332234699999999999975
No 114
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=64.61 E-value=3.5 Score=29.08 Aligned_cols=49 Identities=18% Similarity=0.533 Sum_probs=34.6
Q ss_pred CCccccccccccc-CCcceEEecCCCccccHHHHHHHHh-------cCCCCcccccc
Q 048010 109 GALECAVCLNEFE-DDETLRLIPKCDHVFHPECIDAWLE-------SHTTCPVCRSN 157 (320)
Q Consensus 109 ~~~~C~ICl~~~~-~~~~~r~lp~C~H~FH~~Ci~~Wl~-------~~~~CP~CR~~ 157 (320)
+...|.||..... ++..+.+-..|.-.||..|+..=|. ..-.||.|...
T Consensus 5 ~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~ 61 (66)
T 2yt5_A 5 SSGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFA 61 (66)
T ss_dssp CCCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHT
T ss_pred CCCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcCc
Confidence 4568999998753 3345555567999999999886432 34479999654
No 115
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=63.18 E-value=0.95 Score=33.68 Aligned_cols=45 Identities=31% Similarity=0.711 Sum_probs=28.9
Q ss_pred ccccccccccCCcceEEecCCCccccHHHHHHHHhc----C-CCCcccccc
Q 048010 112 ECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLES----H-TTCPVCRSN 157 (320)
Q Consensus 112 ~C~ICl~~~~~~~~~r~lp~C~H~FH~~Ci~~Wl~~----~-~~CP~CR~~ 157 (320)
.|.||...-.. +.+..--.|...||..|+++-|.. . -.||.|+.+
T Consensus 28 ~C~vC~~~~d~-~~ll~CD~C~~~yH~~Cl~PpL~~~P~g~~W~C~~C~~d 77 (77)
T 3shb_A 28 ACHLCGGRQDP-DKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRND 77 (77)
T ss_dssp SBTTTCCCSCG-GGEEECTTTCCEEETTTSSSCCSSCCSSSCCCCTTTC--
T ss_pred cCCccCCCCCC-cceeEeCCCCCccCcccCCCcccCCCCCCceECcCcccc
Confidence 46666655333 344444468999999999976642 2 479999753
No 116
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=62.59 E-value=1.4 Score=31.85 Aligned_cols=46 Identities=22% Similarity=0.610 Sum_probs=31.1
Q ss_pred CCcccccccccccCCcceEEecCCCccccHHHHHHHHh---cCCCCccccc
Q 048010 109 GALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLE---SHTTCPVCRS 156 (320)
Q Consensus 109 ~~~~C~ICl~~~~~~~~~r~lp~C~H~FH~~Ci~~Wl~---~~~~CP~CR~ 156 (320)
+...| ||......+..+.- -.|..-||..|+..--. ....||.|+.
T Consensus 18 ~~~~C-iC~~~~~~~~MIqC-d~C~~WfH~~Cvgi~~~~~~~~~~C~~C~~ 66 (68)
T 3o70_A 18 GLVTC-FCMKPFAGRPMIEC-NECHTWIHLSCAKIRKSNVPEVFVCQKCRD 66 (68)
T ss_dssp TCCCS-TTCCCCTTCCEEEC-TTTCCEEETTTTTCCTTSCCSSCCCHHHHT
T ss_pred CceEe-ECCCcCCCCCEEEC-CCCCccccccccCcCcccCCCcEECCCCCC
Confidence 45668 99887664334443 35999999999865321 3457999864
No 117
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=62.48 E-value=5.5 Score=28.39 Aligned_cols=40 Identities=23% Similarity=0.444 Sum_probs=31.6
Q ss_pred CcccccccccccCCcceEEecCCCccccHHHHHHHHhcCCCCccccccccC
Q 048010 110 ALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLAS 160 (320)
Q Consensus 110 ~~~C~ICl~~~~~~~~~r~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~ 160 (320)
...|+.|-+.+..++.+.. -+..||.+| ..|-.|..+|..
T Consensus 9 ~~~C~~C~~~I~~~~~v~a---~~~~~H~~C--------F~C~~C~~~L~~ 48 (76)
T 2cu8_A 9 ASKCPKCDKTVYFAEKVSS---LGKDWHKFC--------LKCERCSKTLTP 48 (76)
T ss_dssp CCBCTTTCCBCCTTTEEEE---TTEEEETTT--------CBCSSSCCBCCT
T ss_pred CCCCcCCCCEeECCeEEEE---CCeEeeCCC--------CCCCCCCCccCC
Confidence 3579999999997776543 578999888 569999888863
No 118
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=62.48 E-value=0.64 Score=35.69 Aligned_cols=49 Identities=29% Similarity=0.501 Sum_probs=33.7
Q ss_pred CCcccccccccccCCcceEEecCCCccccHHHHHHHHh----cCCCCccccccc
Q 048010 109 GALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLE----SHTTCPVCRSNL 158 (320)
Q Consensus 109 ~~~~C~ICl~~~~~~~~~r~lp~C~H~FH~~Ci~~Wl~----~~~~CP~CR~~l 158 (320)
+...|.||...-.. +.+..--.|...||..|+.+=|. ..-.||.|...-
T Consensus 15 ~~~~C~vC~~~~~~-~~ll~CD~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~~~ 67 (92)
T 2e6r_A 15 DSYICQVCSRGDED-DKLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCILAE 67 (92)
T ss_dssp CCCCCSSSCCSGGG-GGCEECTTTCCEECSSSSSSCCSSCCSSCCCCHHHHHHH
T ss_pred CCCCCccCCCcCCC-CCEEEcCCCCchhccccCCCCcccCCCCCcCCccCcCcc
Confidence 44579999887543 34445556999999999985443 234699997643
No 119
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=62.26 E-value=10 Score=29.62 Aligned_cols=46 Identities=24% Similarity=0.513 Sum_probs=29.6
Q ss_pred Ccccccccccc-----cCCcceEEecCCCccccHHHHHHH------H-hcCCCCcccc
Q 048010 110 ALECAVCLNEF-----EDDETLRLIPKCDHVFHPECIDAW------L-ESHTTCPVCR 155 (320)
Q Consensus 110 ~~~C~ICl~~~-----~~~~~~r~lp~C~H~FH~~Ci~~W------l-~~~~~CP~CR 155 (320)
...|.+|+..= ..++.+..-..|+..||..|+..+ + ...-.||-|+
T Consensus 5 ~~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~ 62 (112)
T 3v43_A 5 IPICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLKFSPELTVRVKALRWQCIECK 62 (112)
T ss_dssp CSSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHTCCHHHHHHHHTSCCCCTTTC
T ss_pred CccccccCCchhhCcCCCchhceEhhhcCCCCCCchhcCCHHHHHHhhccccccccCC
Confidence 35699998763 123344445569999999999632 2 2344677775
No 120
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=61.40 E-value=1.3 Score=32.81 Aligned_cols=44 Identities=27% Similarity=0.680 Sum_probs=30.1
Q ss_pred ccccccccccCCcceEEecCCCccccHHHHHHHHh----c-CCCCccccc
Q 048010 112 ECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLE----S-HTTCPVCRS 156 (320)
Q Consensus 112 ~C~ICl~~~~~~~~~r~lp~C~H~FH~~Ci~~Wl~----~-~~~CP~CR~ 156 (320)
.|.||...-..+ .+..--.|...||..|+++=|. . .-.||.|..
T Consensus 28 ~C~vC~~~~~~~-~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 76 (77)
T 2e6s_A 28 SCRVCGGKHEPN-MQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCKT 76 (77)
T ss_dssp SCSSSCCCCCST-TEEECSSSCCEEETTSSSSCCSSCCCSSCCCCTTTCC
T ss_pred CCcCcCCcCCCC-CEEEcCCCCccccccccCCCccCCCCCCCcCCcCccC
Confidence 688898653333 4445556999999999986443 2 346998865
No 121
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=57.13 E-value=1.9 Score=31.34 Aligned_cols=44 Identities=30% Similarity=0.695 Sum_probs=28.9
Q ss_pred ccccccccccCCcceEEecCCCccccHHHHHHHHh----c-CCCCccccc
Q 048010 112 ECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLE----S-HTTCPVCRS 156 (320)
Q Consensus 112 ~C~ICl~~~~~~~~~r~lp~C~H~FH~~Ci~~Wl~----~-~~~CP~CR~ 156 (320)
.|.||...-.. ..+..--.|...||..|+++=|. . .-.||.|+.
T Consensus 20 ~C~~C~~~~~~-~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 68 (70)
T 3asl_A 20 ACHLCGGRQDP-DKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 68 (70)
T ss_dssp SBTTTCCCSCG-GGEEECTTTCCEEEGGGSSSCCSSCCSSSCCCCTTTSC
T ss_pred CCcCCCCcCCC-CCEEEcCCCCCceecccCCCCcCCCCCCCCcCCcCccC
Confidence 46677754333 34445556999999999986443 2 347998865
No 122
>1mnt_A MNT repressor; transcription regulation; NMR {Enterobacteria phage P22} SCOP: a.43.1.1
Probab=56.97 E-value=5.2 Score=29.51 Aligned_cols=18 Identities=33% Similarity=0.850 Sum_probs=15.5
Q ss_pred CcccccccCcHHHHHHHH
Q 048010 251 DTERFTLRLPVDVRKQIM 268 (320)
Q Consensus 251 ~~~r~tlrLpe~v~~~~~ 268 (320)
+...||||||+++++.+-
T Consensus 3 ~~~~f~lRi~~eLh~~L~ 20 (76)
T 1mnt_A 3 DDPHFNFRMPMEVREKLK 20 (76)
T ss_dssp SSCCCEEECCHHHHHHHH
T ss_pred CCCeeeeeCCHHHHHHHH
Confidence 456899999999998877
No 123
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=56.92 E-value=8.4 Score=26.90 Aligned_cols=40 Identities=15% Similarity=0.390 Sum_probs=29.7
Q ss_pred cccccccccccCCcceEEecCCCccccHHHHHHHHhcCCCCccccccccC
Q 048010 111 LECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLAS 160 (320)
Q Consensus 111 ~~C~ICl~~~~~~~~~r~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~ 160 (320)
..|+.|-+.+...+.+... -+..||.+| ..|-.|..+|..
T Consensus 6 ~~C~~C~~~I~~~~~~~~a--~~~~~H~~C--------F~C~~C~~~L~~ 45 (72)
T 1x4k_A 6 SGCQECKKTIMPGTRKMEY--KGSSWHETC--------FICHRCQQPIGT 45 (72)
T ss_dssp CCBSSSCCCCCSSSCEEEE--TTEEEETTT--------TCCSSSCCCCCS
T ss_pred CCCccCCCcccCCceEEEE--CcCeecccC--------CcccccCCccCC
Confidence 4699999999876544332 578999888 568889887753
No 124
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=56.81 E-value=6.9 Score=28.49 Aligned_cols=39 Identities=28% Similarity=0.622 Sum_probs=31.0
Q ss_pred CcccccccccccCCcceEEecCCCccccHHHHHHHHhcCCCCcccccccc
Q 048010 110 ALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLA 159 (320)
Q Consensus 110 ~~~C~ICl~~~~~~~~~r~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~ 159 (320)
...|+-|-+.+.+++.+.. -+..||.+| ..|-.|+..|.
T Consensus 15 ~~~C~~C~~~I~~~~~v~a---~~~~wH~~C--------F~C~~C~~~L~ 53 (80)
T 2dj7_A 15 PSHCAGCKEEIKHGQSLLA---LDKQWHVSC--------FKCQTCSVILT 53 (80)
T ss_dssp CSCCTTTCCCCSSSCCEEE---TTEEECTTT--------CBCSSSCCBCS
T ss_pred CCCCcCcCCeeCCCeEEEE---CCccccccc--------CCcCcCCCCcC
Confidence 4579999999987776644 578999988 66889988775
No 125
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=56.18 E-value=5.6 Score=28.37 Aligned_cols=37 Identities=24% Similarity=0.528 Sum_probs=23.8
Q ss_pred ccccccccccCCcceEEecCCCccccHHHHHHHHhcCCCCcccccccc
Q 048010 112 ECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLA 159 (320)
Q Consensus 112 ~C~ICl~~~~~~~~~r~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~ 159 (320)
.|+.|-+.+..++.+.. -+..||.+| ..|-.|..+|.
T Consensus 2 ~C~~C~~~I~~~~~v~a---~~~~~H~~C--------F~C~~C~~~L~ 38 (76)
T 1iml_A 2 KCPKCDKEVYFAERVTS---LGKDWHRPC--------LKCEKCGKTLT 38 (76)
T ss_dssp BCTTTSSBCCGGGEEEE---TTEEEETTT--------CBCTTTCCBCC
T ss_pred cCCCCCCEEECceEEEE---CCccccCCC--------CCccccCccCC
Confidence 37777777765554432 367777776 45777777664
No 126
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=56.12 E-value=9.6 Score=26.59 Aligned_cols=41 Identities=20% Similarity=0.411 Sum_probs=30.0
Q ss_pred CcccccccccccCCcceEEecCCCccccHHHHHHHHhcCCCCccccccccC
Q 048010 110 ALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLAS 160 (320)
Q Consensus 110 ~~~C~ICl~~~~~~~~~r~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~ 160 (320)
...|+-|-..+..++.+.. .-+..||.+| ..|-.|..+|..
T Consensus 5 ~~~C~~C~~~I~~~~~~~~--a~~~~~H~~C--------F~C~~C~~~L~~ 45 (72)
T 1wyh_A 5 SSGCSACGETVMPGSRKLE--YGGQTWHEHC--------FLCSGCEQPLGS 45 (72)
T ss_dssp CCBCSSSCCBCCSSSCEEC--STTCCEETTT--------CBCTTTCCBTTT
T ss_pred CCCCccCCCccccCccEEE--ECccccCccc--------CeECCCCCcCCC
Confidence 3579999999987544322 3678999888 568889887753
No 127
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=55.99 E-value=9.4 Score=30.03 Aligned_cols=48 Identities=23% Similarity=0.480 Sum_probs=31.6
Q ss_pred CCCcccccccccccCCcceEEec--CCCccccHHHHHHHHhc----CCCCccccccccCC
Q 048010 108 KGALECAVCLNEFEDDETLRLIP--KCDHVFHPECIDAWLES----HTTCPVCRSNLASE 161 (320)
Q Consensus 108 ~~~~~C~ICl~~~~~~~~~r~lp--~C~H~FH~~Ci~~Wl~~----~~~CP~CR~~l~~~ 161 (320)
..+..|.+|.+ .++ +..-- .|-..||..|+. |.. .-.||-|.-.+...
T Consensus 13 ~~~~~C~~C~~---~G~-ll~CD~~~Cp~~fH~~Cl~--L~~~P~g~W~Cp~c~C~~C~k 66 (107)
T 4gne_A 13 MHEDYCFQCGD---GGE-LVMCDKKDCPKAYHLLCLN--LTQPPYGKWECPWHQCDECSS 66 (107)
T ss_dssp SSCSSCTTTCC---CSE-EEECCSTTCCCEECTGGGT--CSSCCSSCCCCGGGBCTTTCS
T ss_pred CCCCCCCcCCC---CCc-EeEECCCCCCcccccccCc--CCcCCCCCEECCCCCCCcCCC
Confidence 45677999983 243 33332 388999999998 543 34699887655543
No 128
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=55.62 E-value=19 Score=22.96 Aligned_cols=28 Identities=21% Similarity=0.355 Sum_probs=15.2
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHH
Q 048010 30 KFSPSLAIIIVVLISALFFMGFFSIYIR 57 (320)
Q Consensus 30 ~~~~~~~iiiiilv~~~~ll~~~~i~~r 57 (320)
.-..+..|++++++.+.++.++.++++|
T Consensus 9 s~GaIAGiVvG~v~gv~li~~l~~~~~r 36 (38)
T 2k1k_A 9 TGGEIVAVIFGLLLGAALLLGILVFRSR 36 (38)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCceeeeehHHHHHHHHHHHHHHHHee
Confidence 3444556666666655555555544433
No 129
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=55.22 E-value=9.5 Score=26.98 Aligned_cols=42 Identities=19% Similarity=0.545 Sum_probs=31.0
Q ss_pred CCcccccccccccCCcceEEecCCCccccHHHHHHHHhcCCCCccccccccC
Q 048010 109 GALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLAS 160 (320)
Q Consensus 109 ~~~~C~ICl~~~~~~~~~r~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~ 160 (320)
....|+-|.+.+...+.+... -+..||.+| ..|-.|..+|..
T Consensus 10 ~~~~C~~C~~~I~~~~~~~~a--~~~~~H~~C--------F~C~~C~~~L~~ 51 (77)
T 1g47_A 10 ASATCERCKGGFAPAEKIVNS--NGELYHEQC--------FVCAQCFQQFPE 51 (77)
T ss_dssp CCCBCSSSCCBCCSTTTCEEE--TTEEECTTT--------CCCTTTCCCCGG
T ss_pred CCCCchhcCCccCCCceEEEe--CccEecccc--------CeECCCCCCCCC
Confidence 346799999999865554322 578999888 568889887764
No 130
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=54.34 E-value=2.5 Score=37.83 Aligned_cols=45 Identities=31% Similarity=0.711 Sum_probs=26.7
Q ss_pred ccccccccccCCcceEEecCCCccccHHHHHHHHh----c-CCCCcccccc
Q 048010 112 ECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLE----S-HTTCPVCRSN 157 (320)
Q Consensus 112 ~C~ICl~~~~~~~~~r~lp~C~H~FH~~Ci~~Wl~----~-~~~CP~CR~~ 157 (320)
.|.+|...-..+ .+...-.|...||..|+++=|. . .-.||.|+.+
T Consensus 176 ~C~vC~~~~~~~-~lL~CD~C~~~yH~~CL~PPL~~vP~G~~W~Cp~C~~~ 225 (226)
T 3ask_A 176 ACHLCGGRQDPD-KQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRND 225 (226)
T ss_dssp SCSSSCCCCC---CCEECSSSCCEECSCC--CCCCSCCSSSCCCCGGGC--
T ss_pred CCcCCCCCCCCC-CeEEcCCCCcceeCccCCCCcccCCCCCCCCCcCCcCc
Confidence 478887643333 3444456999999999996553 2 3469999653
No 131
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=54.28 E-value=4.8 Score=30.84 Aligned_cols=45 Identities=24% Similarity=0.538 Sum_probs=28.5
Q ss_pred CCcccccccccccCCcceEEecC--CC-ccccHHHHHHHHh----cCCCCccccccc
Q 048010 109 GALECAVCLNEFEDDETLRLIPK--CD-HVFHPECIDAWLE----SHTTCPVCRSNL 158 (320)
Q Consensus 109 ~~~~C~ICl~~~~~~~~~r~lp~--C~-H~FH~~Ci~~Wl~----~~~~CP~CR~~l 158 (320)
+..-| ||..... ++.+ .--. |. ..||..|+. |. .+..||.|+..-
T Consensus 35 e~~yC-iC~~~~~-g~MI-~CD~~dC~~~WfH~~CVg--l~~~p~g~W~Cp~C~~~~ 86 (91)
T 1weu_A 35 EPTYC-LCHQVSY-GEMI-GCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQES 86 (91)
T ss_dssp CCBCS-TTCCBCC-SCCC-CCSCSSCSCCCCCSTTTT--CSSCCCSSCCCTTTCCCC
T ss_pred CCcEE-ECCCCCC-CCEe-EecCCCCCCCCEecccCC--cCcCCCCCEECcCccCcC
Confidence 34557 9988643 4433 2223 54 689999997 43 245799997643
No 132
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=54.04 E-value=7.8 Score=28.25 Aligned_cols=41 Identities=29% Similarity=0.555 Sum_probs=31.5
Q ss_pred CCcccccccccccCCcceEEecCCCccccHHHHHHHHhcCCCCccccccccC
Q 048010 109 GALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLAS 160 (320)
Q Consensus 109 ~~~~C~ICl~~~~~~~~~r~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~ 160 (320)
....|+.|-..+...+.+.. -+..||.+| ..|-.|...|..
T Consensus 14 ~~~~C~~C~~~I~~~e~v~a---~~~~wH~~C--------F~C~~C~~~L~~ 54 (82)
T 2co8_A 14 AGDLCALCGEHLYVLERLCV---NGHFFHRSC--------FRCHTCEATLWP 54 (82)
T ss_dssp SSCBCSSSCCBCCTTTBCCB---TTBCCBTTT--------CBCSSSCCBCCT
T ss_pred CCCCCcccCCCcccceEEEE---CCCeeCCCc--------CEEcCCCCCcCC
Confidence 34579999999987766542 578999998 668889887754
No 133
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=53.71 E-value=8.6 Score=28.57 Aligned_cols=36 Identities=19% Similarity=0.309 Sum_probs=26.1
Q ss_pred CCcccccccccccCCcceEEecCCCccccHHHHHHH
Q 048010 109 GALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAW 144 (320)
Q Consensus 109 ~~~~C~ICl~~~~~~~~~r~lp~C~H~FH~~Ci~~W 144 (320)
+...|.+|...|..-..----..||++|+..|....
T Consensus 20 ~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~ 55 (84)
T 1z2q_A 20 DAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRHR 55 (84)
T ss_dssp TCCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCCE
T ss_pred CCCCCcCcCCccccchhcccccCCCcEEChHHhCCe
Confidence 456899999999854332233359999999997654
No 134
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=53.57 E-value=10 Score=26.48 Aligned_cols=39 Identities=31% Similarity=0.637 Sum_probs=27.8
Q ss_pred cccccccccccCCcceEEecCCCccccHHHHHHHHhcCCCCcccccccc
Q 048010 111 LECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLA 159 (320)
Q Consensus 111 ~~C~ICl~~~~~~~~~r~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~ 159 (320)
..|+.|-+.+...+.+.. .-+..||.+| ..|-.|...|.
T Consensus 6 ~~C~~C~~~I~~~~~~~~--a~~~~~H~~C--------F~C~~C~~~L~ 44 (72)
T 1x61_A 6 SGCGGCGEDVVGDGAGVV--ALDRVFHVGC--------FVCSTCRAQLR 44 (72)
T ss_dssp CCCSSSCSCCCSSSCCEE--CSSSEECTTT--------CBCSSSCCBCT
T ss_pred CCCccCCCccCCCceEEE--ECCCeEcccC--------CcccccCCcCC
Confidence 469999988876443322 2578899888 56888888874
No 135
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=53.44 E-value=7.7 Score=28.12 Aligned_cols=45 Identities=24% Similarity=0.538 Sum_probs=28.4
Q ss_pred CCcccccccccccCCcceEEecC--CC-ccccHHHHHHHHh----cCCCCccccccc
Q 048010 109 GALECAVCLNEFEDDETLRLIPK--CD-HVFHPECIDAWLE----SHTTCPVCRSNL 158 (320)
Q Consensus 109 ~~~~C~ICl~~~~~~~~~r~lp~--C~-H~FH~~Ci~~Wl~----~~~~CP~CR~~l 158 (320)
+..-| ||..... ++.+ .--. |. ..||..|+. |. .+..||.|+..-
T Consensus 15 ~~~~C-~C~~~~~-g~MI-~CD~~~C~~~wfH~~Cvg--l~~~p~g~w~Cp~C~~~~ 66 (71)
T 1wen_A 15 EPTYC-LCHQVSY-GEMI-GCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQES 66 (71)
T ss_dssp SCCCS-TTCCCSC-SSEE-CCSCSSCSCCCEETTTTT--CSSCCSSCCCCTTTSSCS
T ss_pred CCCEE-ECCCCCC-CCEe-EeeCCCCCCccEecccCC--cCcCCCCCEECCCCCccc
Confidence 34567 8987643 4433 2223 55 689999998 43 345799997643
No 136
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=53.21 E-value=8.6 Score=28.44 Aligned_cols=36 Identities=25% Similarity=0.498 Sum_probs=25.7
Q ss_pred CCcccccccccccCCcceEEecCCCccccHHHHHHH
Q 048010 109 GALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAW 144 (320)
Q Consensus 109 ~~~~C~ICl~~~~~~~~~r~lp~C~H~FH~~Ci~~W 144 (320)
+...|.+|...|..-..----..||.+|+..|....
T Consensus 18 ~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~ 53 (82)
T 2yw8_A 18 EATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSNE 53 (82)
T ss_dssp CCCBCTTTCCBCBTTBCCEECTTTCCEECSGGGCEE
T ss_pred cCCcccCcCCcccCccccccCCCCCCEEChHHhCCe
Confidence 456799999999854332233369999999996543
No 137
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=53.20 E-value=8.2 Score=30.36 Aligned_cols=45 Identities=27% Similarity=0.527 Sum_probs=29.1
Q ss_pred ccccccccccc------CCcceEEecCCCccccHHHHHHHH-------hcCCCCcccc
Q 048010 111 LECAVCLNEFE------DDETLRLIPKCDHVFHPECIDAWL-------ESHTTCPVCR 155 (320)
Q Consensus 111 ~~C~ICl~~~~------~~~~~r~lp~C~H~FH~~Ci~~Wl-------~~~~~CP~CR 155 (320)
..|.||+..-. +++.+..-..|+..||..|++.++ ...-.||.|+
T Consensus 2 ~~C~~C~~~~~~n~k~g~~~~Li~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~ 59 (114)
T 2kwj_A 2 SYCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQFTLNMTEAVKTYKWQCIECK 59 (114)
T ss_dssp CCCSSSCCBTTBCTTTCCCCCCEECSSSCCEECTTTTTCCHHHHHHHHHTTCCCGGGC
T ss_pred CcCccCCCCccccccCCCCCCCeEeCCCCCccchhhCCChhhhhhccCCCccCccccC
Confidence 35999987642 123444444699999999998653 1244677774
No 138
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=52.39 E-value=9 Score=28.90 Aligned_cols=51 Identities=18% Similarity=0.313 Sum_probs=32.7
Q ss_pred CCcccccccccccCCcceEEecCCCccccHHHHHHHHh-------cCCCCcccccccc
Q 048010 109 GALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLE-------SHTTCPVCRSNLA 159 (320)
Q Consensus 109 ~~~~C~ICl~~~~~~~~~r~lp~C~H~FH~~Ci~~Wl~-------~~~~CP~CR~~l~ 159 (320)
....|.+|...|..-..----..||++|+..|....+. ....|-.|-..+.
T Consensus 8 ~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~~~~lp~~g~~~~RVC~~C~~~l~ 65 (88)
T 1wfk_A 8 MESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSFSALVPRAGNTQQKVCKQCHTILT 65 (88)
T ss_dssp CCSBCTTTCCBCCSSSCEEECSSSCCEEETTTSCEEEEETTTTSEEEEECHHHHHHHH
T ss_pred cCCCCcCcCCcccCccccccCCCCCCEEChhHcCCceeccccCCCcCEECHHHHHHHH
Confidence 44689999999986443223336999999999765321 1234666655544
No 139
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=52.05 E-value=7.4 Score=29.41 Aligned_cols=49 Identities=22% Similarity=0.460 Sum_probs=32.0
Q ss_pred CcccccccccccCCcceEEecCCCccccHHHHHHHHh------cCCCCccccccc
Q 048010 110 ALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLE------SHTTCPVCRSNL 158 (320)
Q Consensus 110 ~~~C~ICl~~~~~~~~~r~lp~C~H~FH~~Ci~~Wl~------~~~~CP~CR~~l 158 (320)
...|.+|...|..-..---...||++|+..|...+.. ....|-.|-..+
T Consensus 20 ~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~~~~l~~~~~~~RVC~~C~~~l 74 (90)
T 3t7l_A 20 APNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRKCKLQYLEKEARVCVVCYETI 74 (90)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEEEEETTTTEEEEECHHHHHHH
T ss_pred CCcCcCCCCcccchhhCccccCCCCEECCcccCCeeecCCCCCCCeECHHHHHHH
Confidence 4579999999975433233346999999999766531 123466665544
No 140
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=51.90 E-value=2.2 Score=34.44 Aligned_cols=49 Identities=16% Similarity=0.363 Sum_probs=32.5
Q ss_pred CcccccccccccCCcceEEecCCCccccHHHHHHHHhcCCCCccccccc
Q 048010 110 ALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNL 158 (320)
Q Consensus 110 ~~~C~ICl~~~~~~~~~r~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l 158 (320)
...|..|...|..-..---...||.+||..|..........|-.|...+
T Consensus 19 ~~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~~~vRVC~~C~~~~ 67 (120)
T 1y02_A 19 EPSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGNGPRLCLLCQRFR 67 (120)
T ss_dssp -CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC----CCEEHHHHHHH
T ss_pred cCcccCcCCccccccccccCCCCCCeeCHHHhCCCCCCceECHHHHHHH
Confidence 3579999999975332223346999999999777665566788886544
No 141
>1u9p_A PARC; unknown function; 1.90A {Escherichia coli} SCOP: a.43.1.1
Probab=51.59 E-value=6.1 Score=31.87 Aligned_cols=18 Identities=28% Similarity=0.470 Sum_probs=15.7
Q ss_pred CcccccccCcHHHHHHHH
Q 048010 251 DTERFTLRLPVDVRKQIM 268 (320)
Q Consensus 251 ~~~r~tlrLpe~v~~~~~ 268 (320)
+..+|+||||+++++++.
T Consensus 17 ~~~kf~LRLP~eLh~~La 34 (120)
T 1u9p_A 17 GGPQFNLRWPREVLDLVR 34 (120)
T ss_dssp TCCEEEEECCHHHHHHHH
T ss_pred CCCeeEEeCCHHHHHHHH
Confidence 346999999999999887
No 142
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=50.98 E-value=12 Score=26.84 Aligned_cols=40 Identities=20% Similarity=0.528 Sum_probs=30.5
Q ss_pred cccccccccccCCcceEEecCCCccccHHHHHHHHhcCCCCccccccccC
Q 048010 111 LECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLAS 160 (320)
Q Consensus 111 ~~C~ICl~~~~~~~~~r~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~ 160 (320)
..|+.|-+.+..++.+.. .-+..||.+| ..|-.|..+|..
T Consensus 16 ~~C~~C~~~I~~~~~~~~--a~~~~~H~~C--------F~C~~C~~~L~~ 55 (82)
T 1x63_A 16 PKCKGCFKAIVAGDQNVE--YKGTVWHKDC--------FTCSNCKQVIGT 55 (82)
T ss_dssp CBCSSSCCBCCSSSCEEE--CSSCEEETTT--------CCCSSSCCCCTT
T ss_pred CcCccCCcccccCceEEE--ECcccccccc--------CchhhCCCccCC
Confidence 579999999987665432 2578999888 568889888753
No 143
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=50.96 E-value=8.1 Score=31.07 Aligned_cols=34 Identities=21% Similarity=0.492 Sum_probs=24.3
Q ss_pred CcccccccccccCCcceEEecCCCccccHHHHHH
Q 048010 110 ALECAVCLNEFEDDETLRLIPKCDHVFHPECIDA 143 (320)
Q Consensus 110 ~~~C~ICl~~~~~~~~~r~lp~C~H~FH~~Ci~~ 143 (320)
...|.+|...|..-..---...||++||..|...
T Consensus 69 ~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~ 102 (125)
T 1joc_A 69 VQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAK 102 (125)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCE
T ss_pred CCCCcCcCCccccccccccCCCCCeEEChHHhCC
Confidence 4579999999985432223336999999999554
No 144
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=50.50 E-value=5.8 Score=28.66 Aligned_cols=40 Identities=33% Similarity=0.609 Sum_probs=30.2
Q ss_pred CcccccccccccCCcceEEecCCCccccHHHHHHHHhcCCCCccccccccC
Q 048010 110 ALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLAS 160 (320)
Q Consensus 110 ~~~C~ICl~~~~~~~~~r~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~ 160 (320)
...|+.|-+.+.+++.+.. -+..||.+| ..|-.|..+|..
T Consensus 7 ~~~C~~C~~~I~~~~~~~a---~~~~~H~~C--------F~C~~C~~~L~~ 46 (81)
T 1a7i_A 7 GNKCGACGRTVYHAEEVQC---DGRSFHRCC--------FLCMVCRKNLDS 46 (81)
T ss_dssp -CBCSSSCCBCSSTTEEEE---TTEEEESSS--------EECSSSCCEECS
T ss_pred CCcCcCcCccccCceeEEe---CCccccccc--------CccCCCCCCCCC
Confidence 3579999999987775533 678999888 458889888754
No 145
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=50.09 E-value=11 Score=25.97 Aligned_cols=41 Identities=20% Similarity=0.580 Sum_probs=31.2
Q ss_pred CcccccccccccCCcceEEecCCCccccHHHHHHHHhcCCCCccccccccC
Q 048010 110 ALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLAS 160 (320)
Q Consensus 110 ~~~C~ICl~~~~~~~~~r~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~ 160 (320)
...|+-|...+...+.+... -+..||..|+ .|-.|...|..
T Consensus 11 ~~~C~~C~~~i~~~e~~~~~--~~~~~H~~CF--------~C~~C~~~L~~ 51 (72)
T 3f6q_B 11 SATCERCKGGFAPAEKIVNS--NGELYHEQCF--------VCAQCFQQFPE 51 (72)
T ss_dssp TCBCTTTCCBCCTTCEEEEE--TTEEEETTTS--------SCTTTCCCCGG
T ss_pred CccchhcCccccCCceEEEe--CcCeeCcCCC--------cccCCCCCCCC
Confidence 45799999999977755332 5788999884 68889888754
No 146
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}
Probab=49.63 E-value=1.8 Score=31.13 Aligned_cols=45 Identities=22% Similarity=0.528 Sum_probs=29.2
Q ss_pred cccccccccccCCcceEEe-cCCCccccHHHHHHHH---h-----cCCCCccccc
Q 048010 111 LECAVCLNEFEDDETLRLI-PKCDHVFHPECIDAWL---E-----SHTTCPVCRS 156 (320)
Q Consensus 111 ~~C~ICl~~~~~~~~~r~l-p~C~H~FH~~Ci~~Wl---~-----~~~~CP~CR~ 156 (320)
..| ||......+.++.-- +.|..-||..|+.--- . .+..||.||.
T Consensus 11 v~C-~C~~~~~~g~mI~CD~~~C~~W~H~~Cvgi~~~~~~~~~~p~~~~C~~Cr~ 64 (68)
T 2rsd_A 11 VRC-ICSSTMVNDSMIQCEDQRCQVWQHLNCVLIPDKPGESAEVPPVFYCELCRL 64 (68)
T ss_dssp ECC-TTCCCSCCSCEEECSCTTTCEEEETTTSCCCSSTTSCCCCCSSCCCHHHHH
T ss_pred EEe-ECCCCcCCCCEEEECCCCCCCeEchhhCCCCcccccccCCCCcEECcCccC
Confidence 457 797776666555432 1488899999974211 1 1457999974
No 147
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=49.51 E-value=11 Score=27.20 Aligned_cols=33 Identities=21% Similarity=0.362 Sum_probs=23.7
Q ss_pred cccccccccccCCcceEEecCCCccccHHHHHH
Q 048010 111 LECAVCLNEFEDDETLRLIPKCDHVFHPECIDA 143 (320)
Q Consensus 111 ~~C~ICl~~~~~~~~~r~lp~C~H~FH~~Ci~~ 143 (320)
..|.+|...|..-..----..||.+|+..|...
T Consensus 12 ~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~~ 44 (73)
T 1vfy_A 12 DACMICSKKFSLLNRKHHCRSCGGVFCQEHSSN 44 (73)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTCCEECGGGSCE
T ss_pred CcccCCCCccCCccccccCCCCCEEEcccccCC
Confidence 479999999975432222335999999999653
No 148
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=48.19 E-value=14 Score=25.75 Aligned_cols=40 Identities=23% Similarity=0.495 Sum_probs=29.4
Q ss_pred CcccccccccccC--CcceEEecCCCccccHHHHHHHHhcCCCCcccccccc
Q 048010 110 ALECAVCLNEFED--DETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLA 159 (320)
Q Consensus 110 ~~~C~ICl~~~~~--~~~~r~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~ 159 (320)
...|+-|-+.+.. ++.+.. .-+..||.+| ..|-.|..+|.
T Consensus 5 ~~~C~~C~~~I~~~~~~~~~~--a~~~~wH~~C--------F~C~~C~~~L~ 46 (72)
T 1x4l_A 5 SSGCAGCTNPISGLGGTKYIS--FEERQWHNDC--------FNCKKCSLSLV 46 (72)
T ss_dssp SCSBTTTTBCCCCSSSCSCEE--CSSCEECTTT--------CBCSSSCCBCT
T ss_pred CCCCcCCCccccCCCCcceEE--ECCcccCccc--------CEeccCCCcCC
Confidence 3579999999986 333322 2688999988 57889988875
No 149
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=48.13 E-value=12 Score=27.65 Aligned_cols=40 Identities=28% Similarity=0.551 Sum_probs=31.2
Q ss_pred CcccccccccccCCcceEEecCCCccccHHHHHHHHhcCCCCccccccccC
Q 048010 110 ALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLAS 160 (320)
Q Consensus 110 ~~~C~ICl~~~~~~~~~r~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~ 160 (320)
...|+-|-+.+...+.+. .-+..||.+| ..|-.|...|..
T Consensus 15 ~~~C~~C~~~I~~~~~v~---a~~~~~H~~C--------F~C~~C~~~L~~ 54 (91)
T 2d8y_A 15 RETCVECQKTVYPMERLL---ANQQVFHISC--------FRCSYCNNKLSL 54 (91)
T ss_dssp SCBCTTTCCBCCTTSEEE---CSSSEEETTT--------CBCTTTCCBCCT
T ss_pred CCcCccCCCccCCceeEE---ECCCEECCCC--------CeeCCCCCCCCC
Confidence 457999999998776553 3688999998 568889888764
No 150
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=48.10 E-value=42 Score=23.12 Aligned_cols=25 Identities=16% Similarity=0.163 Sum_probs=11.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Q 048010 33 PSLAIIIVVLISALFFMGFFSIYIR 57 (320)
Q Consensus 33 ~~~~iiiiilv~~~~ll~~~~i~~r 57 (320)
++++|++.++..++++..+++++++
T Consensus 11 p~wiIi~svl~GLllL~li~~~LwK 35 (54)
T 2knc_A 11 PIWWVLVGVLGGLLLLTILVLAMWK 35 (54)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555544444444443
No 151
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=47.60 E-value=10 Score=28.06 Aligned_cols=33 Identities=21% Similarity=0.437 Sum_probs=23.0
Q ss_pred CCcccccccccccCCcceEEecCCCccccHHHH
Q 048010 109 GALECAVCLNEFEDDETLRLIPKCDHVFHPECI 141 (320)
Q Consensus 109 ~~~~C~ICl~~~~~~~~~r~lp~C~H~FH~~Ci 141 (320)
+...|.+|...|..-..----..||.+|+..|.
T Consensus 13 ~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs 45 (84)
T 1x4u_A 13 NFGNCTGCSATFSVLKKRRSCSNCGNSFCSRCC 45 (84)
T ss_dssp CCSSCSSSCCCCCSSSCCEECSSSCCEECTTTS
T ss_pred CCCcCcCcCCccccchhhhhhcCCCcEEChhhc
Confidence 456899999999753322222359999998883
No 152
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=47.00 E-value=4 Score=38.90 Aligned_cols=50 Identities=16% Similarity=0.324 Sum_probs=0.0
Q ss_pred CCcccccccccccCCcceEEecCCCccccHHHHHHHHh-------cCCCCccccccc
Q 048010 109 GALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLE-------SHTTCPVCRSNL 158 (320)
Q Consensus 109 ~~~~C~ICl~~~~~~~~~r~lp~C~H~FH~~Ci~~Wl~-------~~~~CP~CR~~l 158 (320)
....|.+|...|..-..---...||++||..|...++. ....|-.|-..+
T Consensus 374 ~~~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~Cs~~~~~~~~~~~~~~rvC~~C~~~l 430 (434)
T 3mpx_A 374 HVMMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNKYPLKYLKDRMAKVCDGCFGEL 430 (434)
T ss_dssp ---------------------------------------------------------
T ss_pred cCCcCCCcCCCCCCcchhhhcccCcCEeehhhCCCeeeCCCCCCCcCEecHHHHHHH
Confidence 34679999999974322222235999999999887652 123577775544
No 153
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=46.44 E-value=8.7 Score=33.56 Aligned_cols=35 Identities=23% Similarity=0.418 Sum_probs=25.0
Q ss_pred CcccccccccccCCcceEEecCCCccccHHHHHHH
Q 048010 110 ALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAW 144 (320)
Q Consensus 110 ~~~C~ICl~~~~~~~~~r~lp~C~H~FH~~Ci~~W 144 (320)
+..|.+|...|.--..---...||++||..|....
T Consensus 161 ~~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~~~ 195 (220)
T 1dvp_A 161 GRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAKQ 195 (220)
T ss_dssp CSBCTTTCCBCCSSSCCEECTTTCCEECSTTSCEE
T ss_pred CCccCCCCCccCCcccccccCCcCCEEChHHhCCe
Confidence 46899999999754322233369999999996543
No 154
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=46.33 E-value=2.9 Score=32.67 Aligned_cols=45 Identities=27% Similarity=0.578 Sum_probs=30.3
Q ss_pred ccccccccccCCcceEEecCCCccccHHHHHHHHhc----CCCCcccccc
Q 048010 112 ECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLES----HTTCPVCRSN 157 (320)
Q Consensus 112 ~C~ICl~~~~~~~~~r~lp~C~H~FH~~Ci~~Wl~~----~~~CP~CR~~ 157 (320)
.|.||...-.+ +.+..-..|...||..|+++=|.. .-.||.|+.-
T Consensus 56 ~C~~C~~~~~~-~~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~c 104 (111)
T 2ysm_A 56 VCQNCKQSGED-SKMLVCDTCDKGYHTFCLQPVMKSVPTNGWKCKNCRIC 104 (111)
T ss_dssp CCTTTCCCSCC-TTEEECSSSCCEEEGGGSSSCCSSCCSSCCCCHHHHCC
T ss_pred cccccCccCCC-CCeeECCCCCcHHhHHhcCCccccCCCCCcCCcCCcCc
Confidence 46777765433 344455569999999999865532 3479998653
No 155
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=46.04 E-value=9.4 Score=33.68 Aligned_cols=35 Identities=23% Similarity=0.477 Sum_probs=25.8
Q ss_pred CcccccccccccCCcceEEecCCCccccHHHHHHH
Q 048010 110 ALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAW 144 (320)
Q Consensus 110 ~~~C~ICl~~~~~~~~~r~lp~C~H~FH~~Ci~~W 144 (320)
+..|.+|...|..-..---...||++||..|...+
T Consensus 164 ~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~~ 198 (226)
T 3zyq_A 164 AEECHRCRVQFGVMTRKHHCRACGQIFCGKCSSKY 198 (226)
T ss_dssp CSBCTTTCCBCBTTBCCEECTTTCCEECTTTCCEE
T ss_pred CCCCcCcCCCCCccccccccCCCcCEeChhhcCCc
Confidence 46899999999854333333469999999997654
No 156
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=46.02 E-value=19 Score=25.48 Aligned_cols=39 Identities=23% Similarity=0.533 Sum_probs=28.9
Q ss_pred cccccccccccC--CcceEEecCCCccccHHHHHHHHhcCCCCcccccccc
Q 048010 111 LECAVCLNEFED--DETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLA 159 (320)
Q Consensus 111 ~~C~ICl~~~~~--~~~~r~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~ 159 (320)
..|+.|-..+.. +..... .-+..||.+| ..|-.|..+|.
T Consensus 6 ~~C~~C~~~I~~~g~~~~~~--a~~~~wH~~C--------F~C~~C~~~L~ 46 (76)
T 1x68_A 6 SGCVACSKPISGLTGAKFIC--FQDSQWHSEC--------FNCGKCSVSLV 46 (76)
T ss_dssp CCCTTTCCCCCTTTTCCEEE--ETTEEEEGGG--------CBCTTTCCBCS
T ss_pred CCCccCCCcccCCCCceeEE--ECCcccCccc--------CChhhCCCcCC
Confidence 469999999885 333322 2678999998 56889988875
No 157
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=45.72 E-value=49 Score=21.81 Aligned_cols=21 Identities=24% Similarity=0.361 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 048010 38 IIVVLISALFFMGFFSIYIRH 58 (320)
Q Consensus 38 iiiilv~~~~ll~~~~i~~r~ 58 (320)
+++-++.++++++.+++|+|+
T Consensus 16 VVgGv~~v~ii~~~~~~~~RR 36 (44)
T 2l2t_A 16 VIGGLFILVIVGLTFAVYVRR 36 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT
T ss_pred ehHHHHHHHHHHHHHHHHhhh
Confidence 333233333344444455554
No 158
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2
Probab=44.36 E-value=5.9 Score=28.80 Aligned_cols=46 Identities=24% Similarity=0.555 Sum_probs=30.7
Q ss_pred cccccccccccCCcceEEecCCCccccHHHHHHHHh-----cCCCCcccccc
Q 048010 111 LECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLE-----SHTTCPVCRSN 157 (320)
Q Consensus 111 ~~C~ICl~~~~~~~~~r~lp~C~H~FH~~Ci~~Wl~-----~~~~CP~CR~~ 157 (320)
.-| ||...+..+.....--.|.--||..|+..--. ....||.|+..
T Consensus 11 ~yC-iC~~~~~~~~~MI~Cd~C~~WfH~~Cvg~~~~~~~~~~~~~C~~C~~~ 61 (75)
T 3kqi_A 11 VYC-VCRLPYDVTRFMIECDACKDWFHGSCVGVEEEEAPDIDIYHCPNCEKT 61 (75)
T ss_dssp EET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCTTTGGGBSSCCCHHHHHH
T ss_pred eEE-ECCCcCCCCCCEEEcCCCCCCEecccccccccccCCCCEEECCCCccc
Confidence 345 89887654433334445999999999965421 34679999764
No 159
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=43.73 E-value=2 Score=33.99 Aligned_cols=47 Identities=26% Similarity=0.604 Sum_probs=31.5
Q ss_pred ccccccccccCCcceEEecCCCccccHHHHHHHHhc----CCCCcccccccc
Q 048010 112 ECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLES----HTTCPVCRSNLA 159 (320)
Q Consensus 112 ~C~ICl~~~~~~~~~r~lp~C~H~FH~~Ci~~Wl~~----~~~CP~CR~~l~ 159 (320)
.|.||...-..++ +..--.|...||..|+++=|.. .-.||.|...+.
T Consensus 60 ~C~~C~~~~~~~~-ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~~~~ 110 (114)
T 2kwj_A 60 SCILCGTSENDDQ-LLFCDDCDRGYHMYCLNPPVAEPPEGSWSCHLCWELLK 110 (114)
T ss_dssp CCTTTTCCTTTTT-EEECSSSCCEEETTTSSSCCSSCCSSCCCCHHHHHHHH
T ss_pred ccCcccccCCCCc-eEEcCCCCccccccccCCCccCCCCCCeECccccchhh
Confidence 5788877644444 4444469999999999864432 346999976543
No 160
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=43.35 E-value=12 Score=30.48 Aligned_cols=50 Identities=16% Similarity=0.372 Sum_probs=31.5
Q ss_pred CCCCccccccccccc-CCcceEEecCCCccccHHHHHHHHhc----CCCCccccc
Q 048010 107 GKGALECAVCLNEFE-DDETLRLIPKCDHVFHPECIDAWLES----HTTCPVCRS 156 (320)
Q Consensus 107 ~~~~~~C~ICl~~~~-~~~~~r~lp~C~H~FH~~Ci~~Wl~~----~~~CP~CR~ 156 (320)
+.+...|++|...|. ....-+....|.|.+|..|-..--.+ .-.|-+|+.
T Consensus 52 ~~~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~~~~~~~~~~~W~C~vC~k 106 (134)
T 1zbd_B 52 GDGVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGVETSNNRPHPVWLCKICLE 106 (134)
T ss_dssp SCSSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEEECCCSSSSCCEEEHHHHH
T ss_pred cCCCccccccCCCcccccCCCCCCCCCCcccccccCCccCCCCCccceechhhHH
Confidence 356778999999994 33333455569999988884421111 114777765
No 161
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=43.31 E-value=18 Score=25.07 Aligned_cols=39 Identities=26% Similarity=0.661 Sum_probs=28.6
Q ss_pred CcccccccccccCCcceEEecCCCccccHHHHHHHHhcCCCCccccccccC
Q 048010 110 ALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLAS 160 (320)
Q Consensus 110 ~~~C~ICl~~~~~~~~~r~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~ 160 (320)
...|+.|-+.+.. +.+. .-+..||.+| ..|-.|..+|..
T Consensus 5 ~~~C~~C~~~I~~-~~~~---a~~~~~H~~C--------F~C~~C~~~L~~ 43 (70)
T 2d8x_A 5 SSGCHQCGEFIIG-RVIK---AMNNSWHPEC--------FRCDLCQEVLAD 43 (70)
T ss_dssp SSBCSSSCCBCCS-CCEE---ETTEEECTTT--------SBCSSSCCBCSS
T ss_pred CCcCccCCCEecc-eEEE---ECcccccccC--------CEeCCCCCcCCC
Confidence 3579999998874 3333 2578899888 568889888764
No 162
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=43.05 E-value=36 Score=22.45 Aligned_cols=11 Identities=9% Similarity=0.211 Sum_probs=5.0
Q ss_pred HHHHHHHHHHh
Q 048010 48 FMGFFSIYIRH 58 (320)
Q Consensus 48 ll~~~~i~~r~ 58 (320)
+++.+++|+|+
T Consensus 27 i~~~~~~~~RR 37 (44)
T 2ks1_B 27 VALGIGLFMRR 37 (44)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHhhh
Confidence 33444455554
No 163
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=42.86 E-value=14 Score=26.48 Aligned_cols=38 Identities=29% Similarity=0.495 Sum_probs=28.3
Q ss_pred CcccccccccccCCcceEEecCCCccccHHHHHHHHhcCCCCcccccccc
Q 048010 110 ALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLA 159 (320)
Q Consensus 110 ~~~C~ICl~~~~~~~~~r~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~ 159 (320)
...|+-|-+.+.. +.+ . .-+..||.+| ..|-.|...|.
T Consensus 15 ~~~C~~C~~~I~~-~~~--~-a~~~~~H~~C--------F~C~~C~~~L~ 52 (79)
T 1x62_A 15 LPMCDKCGTGIVG-VFV--K-LRDRHRHPEC--------YVCTDCGTNLK 52 (79)
T ss_dssp CCCCSSSCCCCCS-SCE--E-CSSCEECTTT--------TSCSSSCCCHH
T ss_pred CCccccCCCCccC-cEE--E-ECcceeCcCc--------CeeCCCCCCCC
Confidence 3579999999886 333 2 3678999998 46888888775
No 164
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=42.77 E-value=18 Score=34.60 Aligned_cols=46 Identities=24% Similarity=0.526 Sum_probs=30.2
Q ss_pred cccccccccccCCcceEEecCCCccccHHHHHHHHh-----cCCCCccccccccC
Q 048010 111 LECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLE-----SHTTCPVCRSNLAS 160 (320)
Q Consensus 111 ~~C~ICl~~~~~~~~~r~lp~C~H~FH~~Ci~~Wl~-----~~~~CP~CR~~l~~ 160 (320)
+.|+|-+..|..+ +|-.. |.|+-|.+ +..||. ..-.||+|...+..
T Consensus 250 L~CPlS~~ri~~P--vRg~~-C~HlQCFD-l~sfL~~~~~~~~W~CPIC~k~~~~ 300 (371)
T 3i2d_A 250 LQCPISYTRMKYP--SKSIN-CKHLQCFD-ALWFLHSQLQIPTWQCPVCQIDIAL 300 (371)
T ss_dssp SBCTTTSSBCSSE--EEETT-CCSSCCEE-HHHHHHHHHHSCCCBCTTTCCBCCG
T ss_pred ecCCCcccccccc--CcCCc-CCCcceEC-HHHHHHHhhcCCceeCCCCCcccCH
Confidence 4699888877754 66664 99983322 344553 24589999887743
No 165
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=42.35 E-value=40 Score=23.28 Aligned_cols=23 Identities=13% Similarity=0.254 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 048010 35 LAIIIVVLISALFFMGFFSIYIR 57 (320)
Q Consensus 35 ~~iiiiilv~~~~ll~~~~i~~r 57 (320)
.+|++.++..++++..+++++++
T Consensus 10 WiIi~svl~GLLLL~Lii~~LwK 32 (54)
T 2l8s_A 10 WVILLSAFAGLLLLMLLILALWK 32 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444434433
No 166
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=42.28 E-value=13 Score=29.54 Aligned_cols=39 Identities=28% Similarity=0.587 Sum_probs=30.5
Q ss_pred CcccccccccccCCcceEEecCCCccccHHHHHHHHhcCCCCcccccccc
Q 048010 110 ALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLA 159 (320)
Q Consensus 110 ~~~C~ICl~~~~~~~~~r~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~ 159 (320)
...|+-|-..+.+...+.. -+..||.+| ..|-.|...|.
T Consensus 61 ~~~C~~C~~~I~~~~~v~a---~~~~wH~~C--------F~C~~C~~~L~ 99 (123)
T 2l4z_A 61 WKRCAGCGGKIADRFLLYA---MDSYWHSRC--------LKCSSCQAQLG 99 (123)
T ss_dssp CSBBSSSSSBCCSSSEEEE---TTEEEETTT--------SBCTTTCCBGG
T ss_pred CCcCcCCCCCcCCcEEEEe---CCcEEcccc--------cCcCcCCCccc
Confidence 3579999999886543433 688999998 67999998886
No 167
>2cpg_A REPA protein, transcriptional repressor COPG; DNA-binding protein, plasmid, gene regulation; 1.60A {Streptococcus agalactiae} SCOP: a.43.1.3 PDB: 1b01_A* 1ea4_A*
Probab=42.01 E-value=8.5 Score=24.52 Aligned_cols=26 Identities=31% Similarity=0.423 Sum_probs=18.6
Q ss_pred ccccccCcHHHHHHHH--hhhcccccce
Q 048010 253 ERFTLRLPVDVRKQIM--NRELNRSNSL 278 (320)
Q Consensus 253 ~r~tlrLpe~v~~~~~--~~~l~r~~s~ 278 (320)
.|+|++||+++..++- .....+++|.
T Consensus 3 ~ritv~l~~~l~~~Ld~~a~~~g~srS~ 30 (45)
T 2cpg_A 3 KRLTITLSESVLENLEKMAREMGLSKSA 30 (45)
T ss_dssp EEEEEEEEHHHHHHHHHHHHHHTCCHHH
T ss_pred ceEEEecCHHHHHHHHHHHHHHCcCHHH
Confidence 4899999999988766 3444555554
No 168
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=41.67 E-value=19 Score=24.81 Aligned_cols=38 Identities=24% Similarity=0.637 Sum_probs=28.3
Q ss_pred CcccccccccccCCcceEEecCCCccccHHHHHHHHhcCCCCcccccccc
Q 048010 110 ALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLA 159 (320)
Q Consensus 110 ~~~C~ICl~~~~~~~~~r~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~ 159 (320)
...|+.|-+.+... .+ . .-+..||.+| ..|-.|..+|.
T Consensus 5 ~~~C~~C~~~I~~~-~~--~-a~~~~~H~~C--------F~C~~C~~~L~ 42 (70)
T 2d8z_A 5 SSGCVQCKKPITTG-GV--T-YREQPWHKEC--------FVCTACRKQLS 42 (70)
T ss_dssp CCBCSSSCCBCCSS-EE--E-SSSSEEETTT--------SBCSSSCCBCT
T ss_pred CCCCcccCCeeccc-eE--E-ECccccCCCC--------CccCCCCCcCC
Confidence 35699999998753 32 2 3678999888 56889988875
No 169
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=41.52 E-value=8 Score=26.94 Aligned_cols=42 Identities=29% Similarity=0.604 Sum_probs=26.9
Q ss_pred CcccccccccccCCcceEEecC--CC-ccccHHHHHHHHh----cCCCCccccc
Q 048010 110 ALECAVCLNEFEDDETLRLIPK--CD-HVFHPECIDAWLE----SHTTCPVCRS 156 (320)
Q Consensus 110 ~~~C~ICl~~~~~~~~~r~lp~--C~-H~FH~~Ci~~Wl~----~~~~CP~CR~ 156 (320)
..-| ||.... .++.+ .--. |. ..||..|+. |. .+-.||.|+.
T Consensus 9 ~~yC-~C~~~~-~g~mi-~CD~~~C~~~wfH~~Cvg--l~~~p~~~w~Cp~C~~ 57 (59)
T 3c6w_A 9 PTYC-LCHQVS-YGEMI-GCDNPDCPIEWFHFACVD--LTTKPKGKWFCPRCVQ 57 (59)
T ss_dssp CEET-TTTEEC-CSEEE-ECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CcEE-ECCCCC-CCCee-EeeCCCCCCCCEecccCC--cccCCCCCEECcCccC
Confidence 3456 898764 34433 3334 55 699999998 43 2447999965
No 170
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=40.66 E-value=22 Score=26.00 Aligned_cols=39 Identities=28% Similarity=0.562 Sum_probs=29.2
Q ss_pred CcccccccccccCCcceEEecCCCccccHHHHHHHHhcCCCCccccccccC
Q 048010 110 ALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLAS 160 (320)
Q Consensus 110 ~~~C~ICl~~~~~~~~~r~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~ 160 (320)
...|+-|-+.+.. ..+. .-+..||.+| ..|-.|...|..
T Consensus 25 ~~~C~~C~~~I~~-~~~~---a~~~~~H~~C--------F~C~~C~~~L~~ 63 (89)
T 1x64_A 25 MPLCDKCGSGIVG-AVVK---ARDKYRHPEC--------FVCADCNLNLKQ 63 (89)
T ss_dssp CCBCTTTCCBCCS-CCEE---SSSCEECTTT--------CCCSSSCCCTTT
T ss_pred CCCcccCCCEecc-cEEE---ECCceECccC--------CEecCCCCCCCC
Confidence 3579999999885 3332 3678999988 568899888753
No 171
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=40.09 E-value=22 Score=25.53 Aligned_cols=40 Identities=23% Similarity=0.579 Sum_probs=29.5
Q ss_pred CCcccccccccccCCcceEEecCCCccccHHHHHHHHhcCCCCccccccccC
Q 048010 109 GALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLAS 160 (320)
Q Consensus 109 ~~~~C~ICl~~~~~~~~~r~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~ 160 (320)
....|+-|-..+. +..+. .-+..||.+| ..|-.|..+|..
T Consensus 14 ~~~~C~~C~~~I~-~~~v~---a~~~~~H~~C--------F~C~~C~~~L~~ 53 (79)
T 2cor_A 14 GKYICQKCHAIID-EQPLI---FKNDPYHPDH--------FNCANCGKELTA 53 (79)
T ss_dssp CCCBCTTTCCBCC-SCCCC---CSSSCCCTTT--------SBCSSSCCBCCT
T ss_pred CCCCCccCCCEec-ceEEE---ECcceeCCCC--------CEeCCCCCccCC
Confidence 3457999999988 33332 3678899888 578999888763
No 172
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=39.82 E-value=18 Score=26.53 Aligned_cols=40 Identities=25% Similarity=0.483 Sum_probs=29.7
Q ss_pred CCcccccccccccCCcceEEecCCCccccHHHHHHHHhcCCCCccccccccC
Q 048010 109 GALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLAS 160 (320)
Q Consensus 109 ~~~~C~ICl~~~~~~~~~r~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~ 160 (320)
....|+.|-+.+. ++.+. .-+..||.+| ..|-.|...|..
T Consensus 24 ~~~~C~~C~~~I~-~~~v~---a~~~~~H~~C--------F~C~~C~~~L~~ 63 (90)
T 2dar_A 24 RTPMCAHCNQVIR-GPFLV---ALGKSWHPEE--------FNCAHCKNTMAY 63 (90)
T ss_dssp CCCBBSSSCCBCC-SCEEE---ETTEEECTTT--------CBCSSSCCBCSS
T ss_pred CCCCCccCCCEec-ceEEE---ECCccccccC--------CccCCCCCCCCC
Confidence 3457999999985 33332 2689999988 678899888863
No 173
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=39.55 E-value=8 Score=38.30 Aligned_cols=47 Identities=21% Similarity=0.515 Sum_probs=31.4
Q ss_pred CcccccccccccCCcceEEecCCCccccHHHHHHHHh-----cCCCCcccccc
Q 048010 110 ALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLE-----SHTTCPVCRSN 157 (320)
Q Consensus 110 ~~~C~ICl~~~~~~~~~r~lp~C~H~FH~~Ci~~Wl~-----~~~~CP~CR~~ 157 (320)
..-| ||...+..+......-.|.--||..|+..--. .+..||.|+..
T Consensus 37 ~~yC-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~ 88 (488)
T 3kv5_D 37 PVYC-VCRQPYDVNRFMIECDICKDWFHGSCVGVEEHHAVDIDLYHCPNCAVL 88 (488)
T ss_dssp CEET-TTTEECCTTSCEEEBTTTCCEEEHHHHTCCGGGGGGEEEBCCHHHHHH
T ss_pred CeEE-eCCCcCCCCCCeEEccCCCCceeeeecCcCcccccCCCEEECCCCcCC
Confidence 3446 89988753443334446999999999864322 24589999764
No 174
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=39.34 E-value=23 Score=25.34 Aligned_cols=38 Identities=29% Similarity=0.720 Sum_probs=28.4
Q ss_pred cccccccccccCCcceEEecCCCccccHHHHHHHHhcCCCCccccccccC
Q 048010 111 LECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLAS 160 (320)
Q Consensus 111 ~~C~ICl~~~~~~~~~r~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~ 160 (320)
..|+.|-..+. ++.+. .-+..||.+| ..|-.|..+|..
T Consensus 16 ~~C~~C~~~I~-~~~v~---a~~~~wH~~C--------F~C~~C~~~L~~ 53 (81)
T 1v6g_A 16 TRCFSCDQFIE-GEVVS---ALGKTYHPDC--------FVCAVCRLPFPP 53 (81)
T ss_dssp CBCTTTCCBCC-SCCEE---ETTEEECTTT--------SSCSSSCCCCCS
T ss_pred CcCccccCEec-cceEE---ECCceeCccC--------CccccCCCCCCC
Confidence 47999999988 34433 2678999888 568889887753
No 175
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=39.29 E-value=22 Score=33.86 Aligned_cols=46 Identities=24% Similarity=0.465 Sum_probs=30.1
Q ss_pred cccccccccccCCcceEEecCCCccccHHHHHHHHh-----cCCCCccccccccC
Q 048010 111 LECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLE-----SHTTCPVCRSNLAS 160 (320)
Q Consensus 111 ~~C~ICl~~~~~~~~~r~lp~C~H~FH~~Ci~~Wl~-----~~~~CP~CR~~l~~ 160 (320)
+.|+|-+..|..+ +|-.. |.|.=|.+ +..||. ..-.||+|.+.+..
T Consensus 216 L~CPlS~~ri~~P--~Rg~~-C~HlqCFD-l~sfL~~~~~~~~W~CPiC~k~~~~ 266 (360)
T 4fo9_A 216 LMCPLGKMRLTIP--CRAVT-CTHLQCFD-AALYLQMNEKKPTWICPVCDKKAAY 266 (360)
T ss_dssp SBCTTTCSBCSSE--EEETT-CCCCCCEE-HHHHHHHHHHSCCCBCTTTCSBCCG
T ss_pred eeCCCccceeccC--CcCCC-CCCCccCC-HHHHHHHHhhCCCeECCCCCcccCH
Confidence 4699888777654 66664 99983222 444542 24589999987753
No 176
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=38.60 E-value=6.4 Score=27.47 Aligned_cols=42 Identities=26% Similarity=0.591 Sum_probs=26.4
Q ss_pred CcccccccccccCCcceEEecC--CC-ccccHHHHHHHHh----cCCCCccccc
Q 048010 110 ALECAVCLNEFEDDETLRLIPK--CD-HVFHPECIDAWLE----SHTTCPVCRS 156 (320)
Q Consensus 110 ~~~C~ICl~~~~~~~~~r~lp~--C~-H~FH~~Ci~~Wl~----~~~~CP~CR~ 156 (320)
..-| ||.... .++.+ .--. |. ..||..|+. |. .+-.||.|+.
T Consensus 10 ~~~C-~C~~~~-~g~mi-~CD~cdC~~~wfH~~Cvg--l~~~p~g~w~C~~C~~ 58 (60)
T 2vnf_A 10 PTYC-LCHQVS-YGEMI-GCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQ 58 (60)
T ss_dssp CEET-TTTEEC-CSEEE-ECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCEE-ECCCcC-CCCEE-EeCCCCCCCceEehhcCC--CCcCCCCCEECcCccC
Confidence 4456 898763 24333 3334 44 689999998 43 2447999964
No 177
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=38.60 E-value=14 Score=25.27 Aligned_cols=38 Identities=18% Similarity=0.424 Sum_probs=28.6
Q ss_pred CcccccccccccCCcceEEecCCCccccHHHHHHHHhcCCCCcccccccc
Q 048010 110 ALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLA 159 (320)
Q Consensus 110 ~~~C~ICl~~~~~~~~~r~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~ 159 (320)
...|+.|-+.+. ++.+ . .-+..||.+| ..|-.|..+|.
T Consensus 5 ~~~C~~C~~~I~-~~~~--~-a~~~~~H~~C--------F~C~~C~~~L~ 42 (66)
T 1nyp_A 5 VPICGACRRPIE-GRVV--N-AMGKQWHVEH--------FVCAKCEKPFL 42 (66)
T ss_dssp CCEETTTTEECC-SCEE--C-CTTSBEETTT--------CBCTTTCCBCS
T ss_pred CCCCcccCCEec-ceEE--E-ECccccccCc--------CEECCCCCCCC
Confidence 357999999988 4432 2 3678999888 56889988875
No 178
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=38.48 E-value=6.8 Score=27.62 Aligned_cols=45 Identities=24% Similarity=0.521 Sum_probs=27.2
Q ss_pred CCcccccccccccCCcceEEecC--CC-ccccHHHHHHHH--hcCCCCccccc
Q 048010 109 GALECAVCLNEFEDDETLRLIPK--CD-HVFHPECIDAWL--ESHTTCPVCRS 156 (320)
Q Consensus 109 ~~~~C~ICl~~~~~~~~~r~lp~--C~-H~FH~~Ci~~Wl--~~~~~CP~CR~ 156 (320)
+..-| ||.... .++.+ .--. |. ..||..|+..-- ..+..||.|+.
T Consensus 10 e~~yC-~C~~~~-~g~MI-~CD~c~C~~~WfH~~Cvgl~~~p~~~w~Cp~C~~ 59 (62)
T 2g6q_A 10 EPTYC-LCNQVS-YGEMI-GCDNEQCPIEWFHFSCVSLTYKPKGKWYCPKCRG 59 (62)
T ss_dssp CCEET-TTTEEC-CSEEE-ECSCTTCSSCEEETGGGTCSSCCSSCCCCHHHHT
T ss_pred CCcEE-ECCCCC-CCCee-eeeCCCCCcccEecccCCcCcCCCCCEECcCccc
Confidence 34557 898863 34433 3334 44 799999998211 12457999965
No 179
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=38.37 E-value=6.6 Score=30.94 Aligned_cols=27 Identities=41% Similarity=0.869 Sum_probs=17.5
Q ss_pred CCCccccHHHHHHHHhcCCCCccccccccCCC
Q 048010 131 KCDHVFHPECIDAWLESHTTCPVCRSNLASEP 162 (320)
Q Consensus 131 ~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~~~ 162 (320)
+||+.| ..=+.....||.|+..-...|
T Consensus 72 ~CG~~F-----~~~~~kPsrCP~CkSe~Ie~P 98 (105)
T 2gmg_A 72 KCGFVF-----KAEINIPSRCPKCKSEWIEEP 98 (105)
T ss_dssp TTCCBC-----CCCSSCCSSCSSSCCCCBCCC
T ss_pred hCcCee-----cccCCCCCCCcCCCCCccCCc
Confidence 589998 111233568999998765444
No 180
>2ay0_A Bifunctional PUTA protein; ribbon-helix-helix, DNA-binding domain, proline catabo proline utilization A, DNA binding protein; 2.10A {Escherichia coli} SCOP: a.43.1.11
Probab=37.73 E-value=9.4 Score=26.48 Aligned_cols=27 Identities=15% Similarity=0.267 Sum_probs=21.6
Q ss_pred ccccccCcHHHHHHHH--hhhccccccee
Q 048010 253 ERFTLRLPVDVRKQIM--NRELNRSNSLV 279 (320)
Q Consensus 253 ~r~tlrLpe~v~~~~~--~~~l~r~~s~~ 279 (320)
..+|+|||+++..++- ..+..|++|.+
T Consensus 4 ~~~svrL~~el~~rL~~lA~~~~rs~s~l 32 (58)
T 2ay0_A 4 TTMGVMLDDATRERIKSAATRIDRTPHWL 32 (58)
T ss_dssp EEEEEEECHHHHHHHHHHHHHTTCCHHHH
T ss_pred cceEeECCHHHHHHHHHHHHHHCcCHHHH
Confidence 4689999999988766 56788888864
No 181
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=37.55 E-value=3.9 Score=25.70 Aligned_cols=17 Identities=18% Similarity=0.655 Sum_probs=11.6
Q ss_pred CcccccccccccCCcce
Q 048010 110 ALECAVCLNEFEDDETL 126 (320)
Q Consensus 110 ~~~C~ICl~~~~~~~~~ 126 (320)
+..|+||+.+|...+.+
T Consensus 5 GFiCP~C~~~l~s~~~L 21 (34)
T 3mjh_B 5 GFICPQCMKSLGSADEL 21 (34)
T ss_dssp EEECTTTCCEESSHHHH
T ss_pred ccCCcHHHHHcCCHHHH
Confidence 46788888887765443
No 182
>2k1a_A Integrin alpha-IIB; single-PASS transmembrane segment, alternative splicing, calcium, cell adhesion, cleavage on PAIR of basic residues; NMR {Homo sapiens} PDB: 2k9j_A
Probab=37.26 E-value=85 Score=20.41 Aligned_cols=25 Identities=16% Similarity=0.163 Sum_probs=12.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Q 048010 33 PSLAIIIVVLISALFFMGFFSIYIR 57 (320)
Q Consensus 33 ~~~~iiiiilv~~~~ll~~~~i~~r 57 (320)
++..|++.++..++++..+.+++.+
T Consensus 9 p~wiIi~s~l~GLllL~li~~~LwK 33 (42)
T 2k1a_A 9 PIWWVLVGVLGGLLLLTILVLAMWK 33 (42)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555544444443
No 183
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=36.46 E-value=14 Score=29.05 Aligned_cols=37 Identities=30% Similarity=0.623 Sum_probs=25.4
Q ss_pred ccccccccccCCcceEEecCCCccccHHHHHHHHhcCCCCccccccc
Q 048010 112 ECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNL 158 (320)
Q Consensus 112 ~C~ICl~~~~~~~~~r~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l 158 (320)
.|+.|-..+...+.+.. .-+..||..| ..|-.|...|
T Consensus 10 ~C~~C~~~I~~~e~~~~--a~~~~~H~~C--------F~C~~C~~~L 46 (123)
T 2l3k_A 10 LCASCDKRIRAYEMTMR--VKDKVYHLEC--------FKCAACQKHF 46 (123)
T ss_dssp CCSSSSCCCCTTCCCCC--CSSCCCCTTT--------CBCTTTCCBC
T ss_pred cccCCCCeecCCceEEE--ECCccccccc--------CccccCCCCC
Confidence 68888888876544322 2478888887 5577777776
No 184
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=35.64 E-value=25 Score=24.71 Aligned_cols=39 Identities=28% Similarity=0.547 Sum_probs=28.8
Q ss_pred cccccccccccC---CcceEEecCCCccccHHHHHHHHhcCCCCcccccccc
Q 048010 111 LECAVCLNEFED---DETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLA 159 (320)
Q Consensus 111 ~~C~ICl~~~~~---~~~~r~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~ 159 (320)
..|+-|-..+.. +..... .-+..||..| ..|-.|..+|.
T Consensus 16 ~~C~~C~~~I~~~g~~~~~~~--a~~~~~H~~C--------F~C~~C~~~L~ 57 (77)
T 2egq_A 16 KKCAGCKNPITGFGKGSSVVA--YEGQSWHDYC--------FHCKKCSVNLA 57 (77)
T ss_dssp CCCSSSCCCCCCCSSCCCEEE--ETTEEEETTT--------CBCSSSCCBCT
T ss_pred ccCcccCCcccCCCCCceeEE--ECcceeCccc--------CEehhcCCCCC
Confidence 569999999885 333322 2578999988 56999988885
No 185
>2k21_A Potassium voltage-gated channel subfamily E member; KCNE1, membrane protein, potassium channel, MINK, auxilliary subunit, micelles, ION transport; NMR {Homo sapiens}
Probab=35.19 E-value=54 Score=26.68 Aligned_cols=28 Identities=25% Similarity=0.421 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 048010 34 SLAIIIVVLISALFFMGFFSIYIRHCSD 61 (320)
Q Consensus 34 ~~~iiiiilv~~~~ll~~~~i~~r~c~~ 61 (320)
.+.|++++.+..||+++++.-|+|..+.
T Consensus 53 ylYIL~vmgffgff~~GImLsYiRSKk~ 80 (138)
T 2k21_A 53 ALYVLMVLGFFGFFTLGIMLSYIRSKKL 80 (138)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eehHHHHHHHHHHHHHHHHHHHhHhhhc
Confidence 3456666666677777777777775443
No 186
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=34.93 E-value=22 Score=24.52 Aligned_cols=38 Identities=24% Similarity=0.627 Sum_probs=27.7
Q ss_pred CcccccccccccCCcceEEecCCCccccHHHHHHHHhcCCCCcccccccc
Q 048010 110 ALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLA 159 (320)
Q Consensus 110 ~~~C~ICl~~~~~~~~~r~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~ 159 (320)
...|+-|-+.+.. +.+.. -+..||.+| ..|-.|..+|.
T Consensus 5 ~~~C~~C~~~I~~-~~~~a---~~~~~H~~C--------F~C~~C~~~L~ 42 (69)
T 2cur_A 5 SSGCVKCNKAITS-GGITY---QDQPWHADC--------FVCVTCSKKLA 42 (69)
T ss_dssp CCCCSSSCCCCCT-TCEEE---TTEEECTTT--------TBCTTTCCBCT
T ss_pred cCCCcccCCEeCc-ceEEE---CccccccCc--------CEECCCCCCCC
Confidence 3569999998874 33332 578899888 56888988875
No 187
>1afo_A Glycophorin A; integral membrane protein, transmembrane helix interactions, membrane protein folding; NMR {Homo sapiens} SCOP: j.35.1.1 PDB: 2kpf_A
Probab=33.98 E-value=94 Score=19.97 Aligned_cols=27 Identities=22% Similarity=0.108 Sum_probs=15.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 048010 33 PSLAIIIVVLISALFFMGFFSIYIRHC 59 (320)
Q Consensus 33 ~~~~iiiiilv~~~~ll~~~~i~~r~c 59 (320)
....|++.+...++-.+.++++.+|+.
T Consensus 11 ~i~lII~~vmaGiIG~IllI~y~I~rl 37 (40)
T 1afo_A 11 EITLIIFGVMAGVIGTILLISYGIRRL 37 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555666555555666666666654
No 188
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=33.53 E-value=33 Score=25.38 Aligned_cols=38 Identities=21% Similarity=0.553 Sum_probs=23.1
Q ss_pred cccccccccccC-CcceEEecCCCccccHHHHHHHHhcCCCCcccccccc
Q 048010 111 LECAVCLNEFED-DETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLA 159 (320)
Q Consensus 111 ~~C~ICl~~~~~-~~~~r~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~ 159 (320)
..|+.|-+.+.. +..+.. -+..||.+| ..|-.|..+|.
T Consensus 6 ~~C~~C~~~I~~~~~~~~a---~~~~~H~~C--------F~C~~C~~~L~ 44 (101)
T 2cup_A 6 SGCVECRKPIGADSKEVHY---KNRFWHDTC--------FRCAKCLHPLA 44 (101)
T ss_dssp CBCSSSCCBCCSSSCEEEE---TTEEEETTT--------CCCSSSCCCTT
T ss_pred CcCcccCCcccCCceEEEE---CccChhhcC--------CcccccCCCCC
Confidence 457777777764 333322 466777766 45667766663
No 189
>2gpe_A Bifunctional protein PUTA; ribbon-helix-helix, DNA-binding domain, proline catabo proline utilization A, DNA binding protein; 1.90A {Escherichia coli} PDB: 2rbf_A* 2jxg_A 2jxh_A 2jxi_A*
Probab=33.18 E-value=15 Score=24.28 Aligned_cols=27 Identities=15% Similarity=0.321 Sum_probs=20.6
Q ss_pred ccccccCcHHHHHHHH--hhhccccccee
Q 048010 253 ERFTLRLPVDVRKQIM--NRELNRSNSLV 279 (320)
Q Consensus 253 ~r~tlrLpe~v~~~~~--~~~l~r~~s~~ 279 (320)
...|+|||+++..++- .....|++|.+
T Consensus 4 ~~~sirl~~~l~~~l~~lA~~~~rs~s~l 32 (52)
T 2gpe_A 4 TTMGVKLDDATRERIKSAATRIDRTPHWL 32 (52)
T ss_dssp EEEEEEEEHHHHHHHHHHHHHTTCCHHHH
T ss_pred ceEEEECCHHHHHHHHHHHHHHCcCHHHH
Confidence 4689999999988766 56677777754
No 190
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=32.99 E-value=17 Score=28.38 Aligned_cols=11 Identities=27% Similarity=1.054 Sum_probs=10.2
Q ss_pred ccHHHHHHHHh
Q 048010 136 FHPECIDAWLE 146 (320)
Q Consensus 136 FH~~Ci~~Wl~ 146 (320)
||..|+.+|+.
T Consensus 43 FCRNCLskWy~ 53 (105)
T 2o35_A 43 FCRNCLSNWYR 53 (105)
T ss_dssp CCHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999985
No 191
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=32.95 E-value=23 Score=25.33 Aligned_cols=39 Identities=31% Similarity=0.552 Sum_probs=28.1
Q ss_pred cccccccccccCCcceEEecCCCccccHHHHHHHHhcCCCCcccccccc
Q 048010 111 LECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLA 159 (320)
Q Consensus 111 ~~C~ICl~~~~~~~~~r~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~ 159 (320)
..|+.|-..+..++.+.. .-+..||..| ..|-.|..+|.
T Consensus 16 ~~C~~C~~~I~~~~~~~~--a~~~~~H~~C--------F~C~~C~~~L~ 54 (82)
T 2ehe_A 16 NTCAECQQLIGHDSRELF--YEDRHFHEGC--------FRCCRCQRSLA 54 (82)
T ss_dssp CBCTTTCCBCCSSCCBCC--CSSCCCBTTT--------SBCTTTCCBCS
T ss_pred CcCccCCCccccCcEEEE--eCCccccccC--------CeecCCCCccC
Confidence 479999999984333321 2478899888 56888988775
No 192
>1iij_A ERBB-2 receptor protein-tyrosine kinase; alpha-helix-PI-bulge-alpha-helix, signaling protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=32.90 E-value=23 Score=22.29 Aligned_cols=17 Identities=18% Similarity=0.342 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHh
Q 048010 42 LISALFFMGFFSIYIRH 58 (320)
Q Consensus 42 lv~~~~ll~~~~i~~r~ 58 (320)
++.++++.+.+.+|+|+
T Consensus 17 lll~vii~l~~~~~iRR 33 (35)
T 1iij_A 17 VLLFLILVVVVGILIKR 33 (35)
T ss_dssp HHHHHHHTTTTTHHHHH
T ss_pred HHHHHHHHHHhheEEee
Confidence 34444444445566664
No 193
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens}
Probab=32.64 E-value=6.7 Score=26.40 Aligned_cols=41 Identities=20% Similarity=0.528 Sum_probs=26.8
Q ss_pred cccccccCCcceEEecCCCccccHHHHHHHH---hcCCCCccccc
Q 048010 115 VCLNEFEDDETLRLIPKCDHVFHPECIDAWL---ESHTTCPVCRS 156 (320)
Q Consensus 115 ICl~~~~~~~~~r~lp~C~H~FH~~Ci~~Wl---~~~~~CP~CR~ 156 (320)
||......+..+.- -.|..-||..|+..-- ..+..||.|+.
T Consensus 8 ~C~~~~~~~~MI~C-d~C~~W~H~~Cvgi~~~~~~~~~~C~~C~~ 51 (52)
T 3o7a_A 8 FCMKPFAGRPMIEC-NECHTWIHLSCAKIRKSNVPEVFVCQKCRD 51 (52)
T ss_dssp TTCCBCTTCCEEEC-TTTCCEEETTTTTCCGGGCCSSCCCHHHHT
T ss_pred EeCCcCCCCCEEEc-CCCCccccccccCCCcccCCCcEECcCCCC
Confidence 67766553344443 3599999999986432 23457999864
No 194
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=32.63 E-value=17 Score=28.28 Aligned_cols=11 Identities=36% Similarity=1.075 Sum_probs=10.2
Q ss_pred ccHHHHHHHHh
Q 048010 136 FHPECIDAWLE 146 (320)
Q Consensus 136 FH~~Ci~~Wl~ 146 (320)
||..|+..|+.
T Consensus 42 FCRNCLskWy~ 52 (104)
T 3fyb_A 42 FCRNCLAKWLM 52 (104)
T ss_dssp CCHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999985
No 195
>2l9u_A Receptor tyrosine-protein kinase ERBB-3; transmenbrane dimer, membrane protein, EGFR; NMR {Homo sapiens}
Probab=32.40 E-value=63 Score=20.31 Aligned_cols=25 Identities=24% Similarity=0.421 Sum_probs=13.6
Q ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHh
Q 048010 34 SLAII-IVVLISALFFMGFFSIYIRH 58 (320)
Q Consensus 34 ~~~ii-iiilv~~~~ll~~~~i~~r~ 58 (320)
.|+.. ++-|+++|++++-.++|.|-
T Consensus 7 ~malt~i~gl~vif~~lg~tflywrg 32 (40)
T 2l9u_A 7 TMALTVIAGLVVIFMMLGGTFLYWRG 32 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCceeEEEcc
Confidence 34443 44455555666666666553
No 196
>2lx0_A Membrane fusion protein P14; membrane fusion protein transmembrane domain, P14 fast prote ARCH, micelle-peptide complex, membrane protein; NMR {Synthetic}
Probab=32.40 E-value=65 Score=19.17 Aligned_cols=23 Identities=22% Similarity=0.255 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Q 048010 37 IIIVVLISALFFMGFFSIYIRHC 59 (320)
Q Consensus 37 iiiiilv~~~~ll~~~~i~~r~c 59 (320)
-+|.-+++++.++.|.++++++.
T Consensus 7 eviaglvalltflafgfwlfkyl 29 (32)
T 2lx0_A 7 EVIAGLVALLTFLAFGFWLFKYL 29 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666666666654
No 197
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=31.65 E-value=20 Score=25.88 Aligned_cols=31 Identities=26% Similarity=0.643 Sum_probs=23.6
Q ss_pred CCcccccccccccCCcceEEecCC-CccccHHHHHHH
Q 048010 109 GALECAVCLNEFEDDETLRLIPKC-DHVFHPECIDAW 144 (320)
Q Consensus 109 ~~~~C~ICl~~~~~~~~~r~lp~C-~H~FH~~Ci~~W 144 (320)
+..-|.||.++ ..++-+. | +-+||..|..+-
T Consensus 7 e~pWC~ICneD----AtlrC~g-CdgDLYC~rC~rE~ 38 (67)
T 2d8v_A 7 GLPWCCICNED----ATLRCAG-CDGDLYCARCFREG 38 (67)
T ss_dssp CCSSCTTTCSC----CCEEETT-TTSEEECSSHHHHH
T ss_pred CCCeeEEeCCC----CeEEecC-CCCceehHHHHHHH
Confidence 34569999988 3477776 8 799998887663
No 198
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=30.33 E-value=16 Score=21.88 Aligned_cols=28 Identities=25% Similarity=0.487 Sum_probs=21.1
Q ss_pred cccccccccccCCcceEEecCCCccccHHHH
Q 048010 111 LECAVCLNEFEDDETLRLIPKCDHVFHPECI 141 (320)
Q Consensus 111 ~~C~ICl~~~~~~~~~r~lp~C~H~FH~~Ci 141 (320)
..|+.|-...-..+.+. .-|..||..|+
T Consensus 4 ~~C~~C~k~Vy~~Ek~~---~~g~~~Hk~CF 31 (31)
T 1zfo_A 4 PNCARCGKIVYPTEKVN---CLDKFWHKACF 31 (31)
T ss_dssp CBCSSSCSBCCGGGCCC---SSSSCCCGGGC
T ss_pred CcCCccCCEEecceeEE---ECCeEecccCC
Confidence 36999999887766553 26789999884
No 199
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=29.96 E-value=25 Score=24.80 Aligned_cols=37 Identities=24% Similarity=0.615 Sum_probs=27.4
Q ss_pred cccccccccccCCcceEEecCCCccccHHHHHHHHhcCCCCcccccccc
Q 048010 111 LECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLA 159 (320)
Q Consensus 111 ~~C~ICl~~~~~~~~~r~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~ 159 (320)
..|+-|-..+.. ..+ ..-+..||.+| ..|-.|..+|.
T Consensus 6 ~~C~~C~~~I~~-~~v---~a~~~~wH~~C--------F~C~~C~~~L~ 42 (73)
T 1wig_A 6 SGCDSCEKYITG-RVL---EAGEKHYHPSC--------ALCVRCGQMFA 42 (73)
T ss_dssp CSCSSSCCCCSS-CCB---CCSSCCBCTTT--------SCCSSSCCCCC
T ss_pred CCcccCCCEecC-eeE---EeCCCCCCCCc--------CEeCCCCCCCC
Confidence 469999998875 322 23678999888 56888888775
No 200
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=29.14 E-value=34 Score=26.62 Aligned_cols=39 Identities=28% Similarity=0.586 Sum_probs=0.0
Q ss_pred CCcccccccccccCCcceEEecCCCccccHHHHHHHHhcCCCCccccccc
Q 048010 109 GALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNL 158 (320)
Q Consensus 109 ~~~~C~ICl~~~~~~~~~r~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l 158 (320)
....|+-|-+.+.....+.. -+..||.+| ..|-.|..+|
T Consensus 4 ~~~~C~~C~~~I~~~~~~~a---~~~~wH~~C--------F~C~~C~~~L 42 (122)
T 1m3v_A 4 SWKRCAGCGGKIADRFLLYA---MDSYWHSRC--------LKCSSCQAQL 42 (122)
T ss_dssp CCCCBSSSSSCCCSSCCEEE---TTEEECHHH--------HCCSSSCCCT
T ss_pred CCCCCcccCCEeCCcEEEEE---CCceeHhhC--------CCcCCCCCcc
No 201
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=29.11 E-value=40 Score=23.96 Aligned_cols=38 Identities=37% Similarity=0.793 Sum_probs=28.5
Q ss_pred CcccccccccccCCcceEEecCCCccccHHHHHHHHhcCCCCcccccccc
Q 048010 110 ALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLA 159 (320)
Q Consensus 110 ~~~C~ICl~~~~~~~~~r~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~ 159 (320)
...|+-|-..+.+ ..+. .-+..||.+| .+|-.|..+|.
T Consensus 15 ~~~C~~C~~~I~~-~~~~---a~~~~~H~~C--------F~C~~C~~~L~ 52 (81)
T 2dlo_A 15 LEKCATCSQPILD-RILR---AMGKAYHPGC--------FTCVVCHRGLD 52 (81)
T ss_dssp CCBCTTTCCBCCS-CCEE---ETTEEECTTT--------CBCSSSCCBCT
T ss_pred CCccccCCCeecc-eeEE---ECCccccHHh--------cCcccCCCccC
Confidence 4579999999884 3332 2678999888 56999988875
No 202
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=28.90 E-value=32 Score=24.43 Aligned_cols=37 Identities=22% Similarity=0.505 Sum_probs=27.5
Q ss_pred cccccccccccCCcceEEecCCCccccHHHHHHHHhcCCCCcccccccc
Q 048010 111 LECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLA 159 (320)
Q Consensus 111 ~~C~ICl~~~~~~~~~r~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~ 159 (320)
..|+.|-+.+. +..+. .-+..||.+| ..|-.|...|.
T Consensus 16 ~~C~~C~~~I~-~~~~~---a~~~~~H~~C--------F~C~~C~~~L~ 52 (81)
T 1x6a_A 16 EFCHGCSLLMT-GPFMV---AGEFKYHPEC--------FACMSCKVIIE 52 (81)
T ss_dssp CBCTTTCCBCC-SCCBC---CTTCCBCTTS--------CBCTTTCCBCC
T ss_pred CcCccCCCCcC-ceEEE---ECCceecccc--------CCccCCCCccC
Confidence 46999999888 33332 3678899888 56888988875
No 203
>2k9i_A Plasmid PRN1, complete sequence; plasmid COPY control protein, ribbon helix helix protein, DNA binding protein; NMR {Sulfolobus islandicus} PDB: 3ft7_A
Probab=28.69 E-value=19 Score=23.67 Aligned_cols=27 Identities=19% Similarity=0.257 Sum_probs=19.2
Q ss_pred cccccccCcHHHHHHHH--hhhcccccce
Q 048010 252 TERFTLRLPVDVRKQIM--NRELNRSNSL 278 (320)
Q Consensus 252 ~~r~tlrLpe~v~~~~~--~~~l~r~~s~ 278 (320)
..++++|||+++..++- ......+.|-
T Consensus 9 ~~~i~vrl~~el~~~l~~~a~~~g~s~s~ 37 (55)
T 2k9i_A 9 GIKLGVYIPQEWHDRLMEIAKEKNLTLSD 37 (55)
T ss_dssp CEEEEEEECHHHHHHHHHHHHHHTCCHHH
T ss_pred cceEEEEcCHHHHHHHHHHHHHhCCCHHH
Confidence 36999999999988776 3344444453
No 204
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=28.52 E-value=22 Score=24.94 Aligned_cols=42 Identities=31% Similarity=0.786 Sum_probs=29.5
Q ss_pred cccccccccccCCcceEEecCCCccccHHHHHHHH-hcCCCCccc
Q 048010 111 LECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWL-ESHTTCPVC 154 (320)
Q Consensus 111 ~~C~ICl~~~~~~~~~r~lp~C~H~FH~~Ci~~Wl-~~~~~CP~C 154 (320)
..|--|...|.+.. ...-++|++.|+.+| |.++ +.=.+||-|
T Consensus 16 ~~C~~C~~~~~~~~-~y~C~~C~~~FC~dC-D~fiHe~Lh~CPgC 58 (59)
T 1z60_A 16 RFCYGCQGELKDQH-VYVCAVCQNVFCVDC-DVFVHDSLHSCPGC 58 (59)
T ss_dssp CEETTTTEECTTSE-EECCTTTTCCBCHHH-HHTTTTTSCSSSTT
T ss_pred CcccccCcccCCCc-cEECCccCcCcccch-hHHHHhhccCCcCC
Confidence 46999999996433 234668999999999 3333 333479988
No 205
>3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone modifications, jumonji demethylase, mental retardation, metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo sapiens}
Probab=27.46 E-value=17 Score=35.63 Aligned_cols=47 Identities=19% Similarity=0.396 Sum_probs=31.0
Q ss_pred ccccccccccCCcceEEecCCCccccHHHHHHHHh-----cCCCCccccccc
Q 048010 112 ECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLE-----SHTTCPVCRSNL 158 (320)
Q Consensus 112 ~C~ICl~~~~~~~~~r~lp~C~H~FH~~Ci~~Wl~-----~~~~CP~CR~~l 158 (320)
...||...+..+......-.|.--||..|+.---. .+..||.|+...
T Consensus 6 ~yCiC~~~~d~~~~MIqCD~C~~WfH~~CVgi~~~~~~~~~~y~C~~C~~~~ 57 (447)
T 3kv4_A 6 VYCLCRLPYDVTRFMIECDMCQDWFHGSCVGVEEEKAADIDLYHCPNCEVLH 57 (447)
T ss_dssp EETTTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTEEECCCHHHHHHH
T ss_pred eEEeCCCcCCCCCCeEEcCCCCcccccccCCcCcccccCCCEEECCCCcccc
Confidence 35589887753333333446999999999853221 356899997754
No 206
>2k5j_A Uncharacterized protein YIIF; structure, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Shigella flexneri 5 str}
Probab=27.36 E-value=26 Score=25.68 Aligned_cols=29 Identities=28% Similarity=0.210 Sum_probs=20.2
Q ss_pred CCcccccccCcHHHHHHHH--hhhcccccce
Q 048010 250 EDTERFTLRLPVDVRKQIM--NRELNRSNSL 278 (320)
Q Consensus 250 ~~~~r~tlrLpe~v~~~~~--~~~l~r~~s~ 278 (320)
-++.|+|++||+++..++- .....+++|-
T Consensus 7 m~m~risI~Lpdel~~~Ld~la~~~g~srse 37 (80)
T 2k5j_A 7 IDMGRILLDLSNEVIKQLDDLEVQRNLPRAD 37 (80)
T ss_dssp TTCCEEEEEECHHHHHHHHHHHHHHTCCHHH
T ss_pred ceeEEEEEECCHHHHHHHHHHHHHhCCCHHH
Confidence 3467999999999987765 3334455564
No 207
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=26.77 E-value=43 Score=27.56 Aligned_cols=39 Identities=33% Similarity=0.721 Sum_probs=25.6
Q ss_pred cccccccccccCCcceEEecCCCccccHHHHHHHHhcCCCCcccccccc
Q 048010 111 LECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLA 159 (320)
Q Consensus 111 ~~C~ICl~~~~~~~~~r~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~ 159 (320)
..|+.|...+...+.+.. .-++.||.+| ..|-.|...|.
T Consensus 66 ~~C~~C~~~I~~~~~v~~--a~~~~~H~~C--------F~C~~C~~~L~ 104 (169)
T 2rgt_A 66 TKCAACQLGIPPTQVVRR--AQDFVYHLHC--------FACVVCKRQLA 104 (169)
T ss_dssp CBCTTTCCBCCTTSEEEE--ETTEEEEGGG--------CBCTTTCCBCC
T ss_pred ccccccccccCCCcEEEE--cCCceEeeCC--------CcCCCCCCCCC
Confidence 357777777766544322 2577888877 46888877764
No 208
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=26.65 E-value=50 Score=27.76 Aligned_cols=43 Identities=21% Similarity=0.529 Sum_probs=30.1
Q ss_pred CCcccccccccccCCcceEEec--CCCccccHHHHHHHHhc----------CCCCcccc
Q 048010 109 GALECAVCLNEFEDDETLRLIP--KCDHVFHPECIDAWLES----------HTTCPVCR 155 (320)
Q Consensus 109 ~~~~C~ICl~~~~~~~~~r~lp--~C~H~FH~~Ci~~Wl~~----------~~~CP~CR 155 (320)
.+..|.||-+. ..+..-. .|...|+..||+.++.. .-.|=+|.
T Consensus 78 ~~~yC~wC~~G----g~l~~Cdn~~C~r~FC~~CI~~nvG~~~~~~i~~~d~W~Cy~C~ 132 (159)
T 3a1b_A 78 YQSYCTICCGG----REVLMCGNNNCCRCFCVECVDLLVGPGAAQAAIKEDPWNCYMCG 132 (159)
T ss_dssp SBSSCTTTSCC----SEEEECSSTTTCCEEEHHHHHHHTCTTHHHHHHTSSSCCCTTTC
T ss_pred CcceeeEecCC----CeEEeeCCCCCCCchhHHHHHHhcCHhHHHHHhccCCCEEEecC
Confidence 45679998864 3454444 58899999999999732 23687774
No 209
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=26.53 E-value=14 Score=28.17 Aligned_cols=45 Identities=18% Similarity=0.353 Sum_probs=27.0
Q ss_pred CCcccccccccccCCcceEEecCCC---ccccHHHHHHHH--hcCCCCcc-ccc
Q 048010 109 GALECAVCLNEFEDDETLRLIPKCD---HVFHPECIDAWL--ESHTTCPV-CRS 156 (320)
Q Consensus 109 ~~~~C~ICl~~~~~~~~~r~lp~C~---H~FH~~Ci~~Wl--~~~~~CP~-CR~ 156 (320)
+..-| ||..... ++.+ .--.|. ..||..|+..-- .....||. |+.
T Consensus 25 ~~~yC-iC~~~~~-g~MI-~CD~c~C~~eWfH~~CVgl~~~p~~~W~Cp~cC~~ 75 (90)
T 2jmi_A 25 EEVYC-FCRNVSY-GPMV-ACDNPACPFEWFHYGCVGLKQAPKGKWYCSKDCKE 75 (90)
T ss_dssp CSCCS-TTTCCCS-SSEE-CCCSSSCSCSCEETTTSSCSSCTTSCCCSSHHHHH
T ss_pred CCcEE-EeCCCCC-CCEE-EecCCCCccccCcCccCCCCcCCCCCccCChhhcc
Confidence 44567 8987532 4433 223444 689999986211 23457999 974
No 210
>2kog_A Vesicle-associated membrane protein 2; synaptobrevin, VAMP2, DPC micelle, snare, coiled coil, membrane fusion, transmembrane; NMR {Rattus norvegicus}
Probab=26.45 E-value=75 Score=25.19 Aligned_cols=10 Identities=20% Similarity=0.544 Sum_probs=4.3
Q ss_pred cchHHHHHHH
Q 048010 31 FSPSLAIIIV 40 (320)
Q Consensus 31 ~~~~~~iiii 40 (320)
||..+-+.++
T Consensus 92 wwkn~K~~ii 101 (119)
T 2kog_A 92 WWKNLKMMII 101 (119)
T ss_dssp SCHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4444444333
No 211
>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1; LIM-interaction-domain (LID), metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=26.43 E-value=34 Score=26.28 Aligned_cols=38 Identities=29% Similarity=0.748 Sum_probs=24.8
Q ss_pred cccccccccccCCcceEEecCCCccccHHHHHHHHhcCCCCcccccccc
Q 048010 111 LECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLA 159 (320)
Q Consensus 111 ~~C~ICl~~~~~~~~~r~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~ 159 (320)
..|+-|-..+.+.+.+. .-+..||.+| ..|-.|..+|.
T Consensus 4 ~~C~~C~~~I~~~~~~~---a~~~~wH~~C--------F~C~~C~~~L~ 41 (114)
T 1j2o_A 4 LTCGGCQQNIGDRYFLK---AIDQYWHEDC--------LSCDLCGCRLG 41 (114)
T ss_dssp BCBSSSCSCBCSSEEEE---CSSSEECTTT--------CCCSSSCSCCC
T ss_pred CCCcCCCCeeCCcEEEE---ECchhHHHhc--------CcccccCCchh
Confidence 45888888777543332 2567778777 56777777765
No 212
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=25.76 E-value=43 Score=23.58 Aligned_cols=37 Identities=30% Similarity=0.664 Sum_probs=27.7
Q ss_pred cccccccccccCCcceEEecCCCccccHHHHHHHHhcCCCCcccccccc
Q 048010 111 LECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLA 159 (320)
Q Consensus 111 ~~C~ICl~~~~~~~~~r~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~ 159 (320)
..|+.|-+.+... .+ . .-+..||.+| ..|-.|..+|.
T Consensus 16 ~~C~~C~~~I~~~-~v--~-a~~~~~H~~C--------F~C~~C~~~L~ 52 (80)
T 2cuq_A 16 PRCARCSKTLTQG-GV--T-YRDQPWHREC--------LVCTGCQTPLA 52 (80)
T ss_dssp CCCTTTCCCCCSC-CE--E-SSSSEECTTT--------CBCSSSCCBCT
T ss_pred CcCCCCCCEecCc-EE--E-ECCchhhhhh--------CCcccCCCcCC
Confidence 4699999988753 32 2 3678999888 56888988874
No 213
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=25.60 E-value=39 Score=28.39 Aligned_cols=38 Identities=29% Similarity=0.691 Sum_probs=25.1
Q ss_pred ccccccccccCCcceEEecCCCccccHHHHHHHHhcCCCCcccccccc
Q 048010 112 ECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLA 159 (320)
Q Consensus 112 ~C~ICl~~~~~~~~~r~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~ 159 (320)
.|+.|-..+...+.+.. .-++.||..| ..|-.|...|.
T Consensus 71 ~C~~C~~~I~~~e~~i~--a~~~~~H~~C--------F~C~~C~~~L~ 108 (188)
T 1rut_X 71 ACSACGQSIPASELVMR--AQGNVYHLKC--------FTCSTCRNRLV 108 (188)
T ss_dssp ECTTTCCEECTTSEEEE--ETTEEECGGG--------CBCTTTCCBCC
T ss_pred ccccCCCccccCcEEEE--cCCCEEeCCC--------CeECCCCCCCC
Confidence 58888887776543322 2578888887 56777776663
No 214
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Probab=25.42 E-value=41 Score=28.26 Aligned_cols=40 Identities=23% Similarity=0.465 Sum_probs=30.8
Q ss_pred CcccccccccccCCcceEEecCCCccccHHHHHHHHhcCCCCccccccccC
Q 048010 110 ALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLAS 160 (320)
Q Consensus 110 ~~~C~ICl~~~~~~~~~r~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~ 160 (320)
...|+.|-..+.+++.+.. -+..||.+| ..|-.|...|..
T Consensus 115 ~~~C~~C~~~I~~~~~v~a---~~~~~H~~C--------F~C~~C~~~L~~ 154 (192)
T 1b8t_A 115 SDGCPRCGQAVYAAEKVIG---AGKSWHKSC--------FRCAKCGKSLES 154 (192)
T ss_dssp CEECTTTSCEECSSSCEEE---TTEEECTTT--------CBCTTTCCBCCS
T ss_pred CCcCCCCCCEecCcEEEec---CCCccchhc--------CCccccCCCCCC
Confidence 4569999999987766643 578899888 668888888753
No 215
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=25.14 E-value=34 Score=28.43 Aligned_cols=47 Identities=19% Similarity=0.370 Sum_probs=30.1
Q ss_pred CCcccccccccccCC-cceEEecCCCccccHHHHHHHHhcC--CCCccccc
Q 048010 109 GALECAVCLNEFEDD-ETLRLIPKCDHVFHPECIDAWLESH--TTCPVCRS 156 (320)
Q Consensus 109 ~~~~C~ICl~~~~~~-~~~r~lp~C~H~FH~~Ci~~Wl~~~--~~CP~CR~ 156 (320)
++..|++|...|.-- ..-+....|.|.+|..|= .|+... -.|-+|+.
T Consensus 67 ~~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~-~~~~~~~~W~C~vC~k 116 (153)
T 2zet_C 67 NETHCARCLQPYRLLLNSRRQCLECSLFVCKSCS-HAHPEEQGWLCDPCHL 116 (153)
T ss_dssp GGTBCTTTCCBGGGCSSCCEECTTTCCEECGGGE-ECCSSSSSCEEHHHHH
T ss_pred CCccchhhcCccccccCCCCcCCCCCchhhcccc-cccCCCCcEeeHHHHH
Confidence 457899999987532 123344469999999996 244322 24777755
No 216
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=25.11 E-value=41 Score=23.70 Aligned_cols=38 Identities=29% Similarity=0.681 Sum_probs=28.6
Q ss_pred cccccccccccCCcceEEecCCCccccHHHHHHHHhcCCCCccccccccC
Q 048010 111 LECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLAS 160 (320)
Q Consensus 111 ~~C~ICl~~~~~~~~~r~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~ 160 (320)
..|+.|-..+.+ +.+. .-+..||.+| ..|-.|..+|..
T Consensus 16 ~~C~~C~~~I~~-~~v~---a~~~~~H~~C--------F~C~~C~~~L~~ 53 (80)
T 1x3h_A 16 PKCGGCNRPVLE-NYLS---AMDTVWHPEC--------FVCGDCFTSFST 53 (80)
T ss_dssp CBCTTTCCBCCS-SCEE---ETTEEECTTT--------CBCSSSCCBSCS
T ss_pred CccccCCCeecc-eeEE---ECCCeEecCc--------CChhhCCCCCCC
Confidence 479999999886 3332 2578899888 568999888864
No 217
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=24.97 E-value=46 Score=31.89 Aligned_cols=44 Identities=27% Similarity=0.618 Sum_probs=31.3
Q ss_pred CCcccccccccccCCcceEEec--CCCccccHHHHHHHHh----------cCCCCccccc
Q 048010 109 GALECAVCLNEFEDDETLRLIP--KCDHVFHPECIDAWLE----------SHTTCPVCRS 156 (320)
Q Consensus 109 ~~~~C~ICl~~~~~~~~~r~lp--~C~H~FH~~Ci~~Wl~----------~~~~CP~CR~ 156 (320)
.+..|.||-+. ..+.... .|...||..||+.++. ..-.|=+|.-
T Consensus 92 ~~~yCr~C~~G----g~l~~Cdn~~C~r~FC~~Ci~~n~g~~~~~~i~~~d~W~Cf~C~p 147 (386)
T 2pv0_B 92 YQSYCSICCSG----ETLLICGNPDCTRCYCFECVDSLVGPGTSGKVHAMSNWVCYLCLP 147 (386)
T ss_dssp SBCSCTTTCCC----SSCEECCSTTCCCEECHHHHHHHTCTTHHHHHHHCSSCCCTTTSS
T ss_pred CcccceEcCCC----CeEEEeCCCCCCcchHHHHHHHhcChhHHHHhhccCCceEEEcCC
Confidence 45679998864 3344444 6999999999999982 2347888854
No 218
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens}
Probab=24.53 E-value=47 Score=22.58 Aligned_cols=39 Identities=23% Similarity=0.537 Sum_probs=28.7
Q ss_pred cccccccccccCCcceEEecCCCcccc--HHHHHHHHhcCCCCcccccccc
Q 048010 111 LECAVCLNEFEDDETLRLIPKCDHVFH--PECIDAWLESHTTCPVCRSNLA 159 (320)
Q Consensus 111 ~~C~ICl~~~~~~~~~r~lp~C~H~FH--~~Ci~~Wl~~~~~CP~CR~~l~ 159 (320)
..|+-|-..+..++.... .-+..|| .+| ..|-.|..+|.
T Consensus 3 ~~C~~C~~~I~~~~~~v~--a~~~~wH~~~~C--------F~C~~C~~~L~ 43 (65)
T 2iyb_E 3 VVCQGCHNAIDPEVQRVT--YNNFSWHASTEC--------FLCSCCSKCLI 43 (65)
T ss_dssp EECTTTSSEECTTSCEEE--ETTEEEETTTTT--------SBCTTTCCBCT
T ss_pred CCCcCCCCeeccCceEEE--ECCCccCCCCCC--------EECCCCCCcCC
Confidence 369999999887533322 2588999 988 57888988875
No 219
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Probab=24.06 E-value=45 Score=28.01 Aligned_cols=38 Identities=32% Similarity=0.648 Sum_probs=23.7
Q ss_pred cccccccccccCCcceEEecCCCccccHHHHHHHHhcCCCCcccccccc
Q 048010 111 LECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLA 159 (320)
Q Consensus 111 ~~C~ICl~~~~~~~~~r~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~ 159 (320)
..|+.|-+.+..++.+.. -+..||.+| ..|-.|..+|.
T Consensus 8 ~~C~~C~~~I~~~~~v~a---~g~~wH~~C--------F~C~~C~~~L~ 45 (192)
T 1b8t_A 8 KKCGVCQKAVYFAEEVQC---EGSSFHKSC--------FLCMVCKKNLD 45 (192)
T ss_dssp EECTTTCCEECSSCCEEE---TTEEECTTT--------CBCTTTCCBCC
T ss_pred CcCccCCCeecceeEEEe---CCceecCCC--------CcCcccCCcCC
Confidence 457777777766554432 466777766 45666666654
No 220
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=23.85 E-value=57 Score=25.17 Aligned_cols=45 Identities=13% Similarity=0.288 Sum_probs=22.9
Q ss_pred CcccccccccccCCcceEEecCCCccccHHHHHHHHhcCCCCcccccccc
Q 048010 110 ALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLA 159 (320)
Q Consensus 110 ~~~C~ICl~~~~~~~~~r~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~ 159 (320)
-..|..|...+... ... . .=+..|+..|...- -...|..|..+|.
T Consensus 30 CF~C~~C~~~L~~~-~f~-~-~~g~~yC~~cy~~~--~~~~C~~C~~~I~ 74 (126)
T 2xqn_T 30 HFCCFDCDSILAGE-IYV-M-VNDKPVCKPCYVKN--HAVVCQGCHNAID 74 (126)
T ss_dssp GSBCTTTCCBCTTS-EEE-E-ETTEEEEHHHHHHH--SCCBCTTTCSBCC
T ss_pred CCCcCCCCCCCCcC-EEE-e-ECCEEechHHhCcC--cCccCcccCCcCC
Confidence 35566666665532 111 1 24556666665442 2345666666654
No 221
>3arc_H Photosystem II reaction center protein H; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 3kzi_H* 3bz1_H* 1s5l_H* 2axt_H* 3bz2_H* 3prq_H* 3prr_H* 3a0b_H* 3a0h_H*
Probab=23.78 E-value=1.2e+02 Score=21.61 Aligned_cols=7 Identities=0% Similarity=0.088 Sum_probs=3.0
Q ss_pred CCCcchH
Q 048010 28 NMKFSPS 34 (320)
Q Consensus 28 ~~~~~~~ 34 (320)
..+|...
T Consensus 21 aPGWGTt 27 (65)
T 3arc_H 21 APGWGTT 27 (65)
T ss_dssp BSTTTTH
T ss_pred cCCccCh
Confidence 3444443
No 222
>2k9j_B Integrin beta-3; transmembrane complex, cell adhesion, cleavage on basic residues, disease mutation, glycoprotein, pyrrolidone carboxylic acid; NMR {Homo sapiens} PDB: 2rmz_A 2rn0_A 2l91_A
Probab=22.70 E-value=1.1e+02 Score=19.75 Aligned_cols=6 Identities=17% Similarity=0.623 Sum_probs=2.3
Q ss_pred HHHHHH
Q 048010 36 AIIIVV 41 (320)
Q Consensus 36 ~iiiii 41 (320)
+|++++
T Consensus 11 ~Iv~gv 16 (43)
T 2k9j_B 11 VVLLSV 16 (43)
T ss_dssp HHHHHH
T ss_pred ehHHHH
Confidence 333333
No 223
>2khu_A Immunoglobulin G-binding protein G, DNA polymerase IOTA; UBM, ubiquitin-binding domain, translesion synthesis, TLS, ubiquitin-binding protein; NMR {Streptococcus SP} PDB: 2khw_A 2l0f_B*
Probab=22.17 E-value=34 Score=26.52 Aligned_cols=17 Identities=35% Similarity=0.720 Sum_probs=14.4
Q ss_pred CcccccccCcHHHHHHHH
Q 048010 251 DTERFTLRLPVDVRKQIM 268 (320)
Q Consensus 251 ~~~r~tlrLpe~v~~~~~ 268 (320)
+.+-| -+||++|.+|||
T Consensus 69 DP~VF-yeLP~eVQ~ELl 85 (108)
T 2khu_A 69 DPQVF-YELPEAVQKELL 85 (108)
T ss_dssp CHHHH-TTSCHHHHHHHH
T ss_pred CHHHH-HHccHHHHHHHH
Confidence 44566 999999999999
No 224
>2jo1_A Phospholemman; FXYD1, Na,K-ATPase, micelle, hydrolase regulator; NMR {Homo sapiens}
Probab=20.77 E-value=1.4e+02 Score=21.68 Aligned_cols=24 Identities=29% Similarity=0.588 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcc
Q 048010 37 IIIVVLISALFFMGFFSIYIRHCS 60 (320)
Q Consensus 37 iiiiilv~~~~ll~~~~i~~r~c~ 60 (320)
+--.++.+++|++++++++-.+|.
T Consensus 18 iGGLifA~vLfi~GI~iilS~Kck 41 (72)
T 2jo1_A 18 IGGLVIAGILFILGILIVLSRRCR 41 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHcCccc
Confidence 334444555666666666666554
No 225
>3j1r_A Archaeal adhesion filament core; helical polymer, flagellar filament, cell adhesion, structur protein; 7.50A {Ignicoccus hospitalis}
Probab=20.61 E-value=1.4e+02 Score=17.39 Aligned_cols=14 Identities=36% Similarity=0.788 Sum_probs=6.7
Q ss_pred chHHHHHHHHHHHH
Q 048010 32 SPSLAIIIVVLISA 45 (320)
Q Consensus 32 ~~~~~iiiiilv~~ 45 (320)
+|+++.++.+++++
T Consensus 2 spiVA~~lLIviav 15 (26)
T 3j1r_A 2 SPVIATLLLILIAV 15 (26)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHH
Confidence 35555554444443
No 226
>2l34_A TYRO protein tyrosine kinase-binding protein; immunoreceptor, transmembrane assembly, DAP12, protein bindi; NMR {Homo sapiens} PDB: 2l35_B
Probab=20.27 E-value=1.1e+02 Score=18.86 Aligned_cols=20 Identities=10% Similarity=0.044 Sum_probs=9.9
Q ss_pred hHHHHHHHHHHHHHHHHHHH
Q 048010 33 PSLAIIIVVLISALFFMGFF 52 (320)
Q Consensus 33 ~~~~iiiiilv~~~~ll~~~ 52 (320)
....|+++.++.++++...+
T Consensus 8 aIaGIVvgdi~~t~~i~~~v 27 (33)
T 2l34_A 8 VLAGIVVGDLVLTVLIALAV 27 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred eEEeEeHHHHHHHHHHHHHH
Confidence 34455555555555444443
Done!