Query 048011
Match_columns 104
No_of_seqs 166 out of 1055
Neff 6.5
Searched_HMMs 46136
Date Fri Mar 29 05:25:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048011.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048011hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0004 AmtB Ammonia permease 100.0 2.6E-29 5.7E-34 199.4 10.7 103 1-103 241-379 (409)
2 KOG0682 Ammonia permease [Inor 100.0 1.9E-29 4.1E-34 203.1 9.3 101 2-102 273-417 (500)
3 TIGR03644 marine_trans_1 proba 100.0 2.8E-28 6.1E-33 194.1 10.4 103 1-103 254-378 (404)
4 TIGR00836 amt ammonium transpo 99.9 3.3E-27 7.2E-32 187.9 10.8 103 1-103 240-380 (403)
5 PRK10666 ammonium transporter; 99.9 5.8E-27 1.3E-31 187.7 10.5 103 1-103 264-403 (428)
6 PF00909 Ammonium_transp: Ammo 99.9 3.2E-26 7E-31 181.3 9.5 102 2-103 236-376 (399)
7 KOG3796 Ammonium transporter R 97.9 2.7E-05 5.8E-10 62.4 5.2 90 11-100 268-411 (442)
8 PF11085 YqhR: Conserved membr 81.1 19 0.0004 26.2 8.2 70 34-103 22-96 (173)
9 COG4161 ArtP ABC-type arginine 69.4 6.5 0.00014 29.2 3.3 25 48-72 121-145 (242)
10 COG4120 ABC-type uncharacteriz 62.9 10 0.00023 29.6 3.4 36 26-61 52-88 (293)
11 PF05552 TM_helix: Conserved T 62.5 5.6 0.00012 22.8 1.5 31 32-62 18-52 (53)
12 PF11167 DUF2953: Protein of u 56.3 34 0.00074 19.3 4.2 29 33-61 10-38 (53)
13 PLN02594 phosphatidate cytidyl 53.5 26 0.00056 28.1 4.3 46 32-79 235-287 (342)
14 PF06305 DUF1049: Protein of u 45.2 36 0.00079 19.9 3.2 23 33-55 25-47 (68)
15 COG1079 Uncharacterized ABC-ty 40.9 69 0.0015 25.2 4.9 44 29-72 59-103 (304)
16 PRK13454 F0F1 ATP synthase sub 40.6 19 0.00041 25.8 1.6 35 66-102 15-51 (181)
17 PF04172 LrgB: LrgB-like famil 39.6 40 0.00087 25.1 3.3 24 40-63 141-165 (215)
18 PF01102 Glycophorin_A: Glycop 37.4 68 0.0015 21.9 3.9 14 33-46 66-79 (122)
19 TIGR00659 conserved hypothetic 37.3 55 0.0012 24.7 3.7 31 33-63 144-175 (226)
20 cd03197 GST_C_mPGES2 GST_C fam 36.8 48 0.001 23.4 3.2 37 25-61 42-80 (149)
21 PF01148 CTP_transf_1: Cytidyl 35.8 68 0.0015 23.0 4.0 40 30-69 193-236 (259)
22 PRK10711 hypothetical protein; 33.0 72 0.0016 24.1 3.8 26 38-63 150-176 (231)
23 COG2056 Predicted permease [Ge 31.2 18 0.00039 29.7 0.3 30 34-63 262-291 (444)
24 PF05957 DUF883: Bacterial pro 30.1 53 0.0011 20.7 2.3 15 31-45 72-86 (94)
25 PRK04288 antiholin-like protei 29.4 88 0.0019 23.7 3.7 25 39-63 156-181 (232)
26 PRK10404 hypothetical protein; 29.3 51 0.0011 21.7 2.2 15 31-45 79-93 (101)
27 TIGR00807 malonate_madL malona 28.2 1.4E+02 0.0031 20.5 4.2 58 8-65 48-124 (125)
28 PF06813 Nodulin-like: Nodulin 28.1 91 0.002 23.5 3.6 36 26-61 59-94 (250)
29 PRK11624 cdsA CDP-diglyceride 27.0 1.3E+02 0.0029 23.0 4.4 39 31-69 216-258 (285)
30 PF06622 SepQ: SepQ protein; 26.9 30 0.00064 26.9 0.8 22 51-72 253-274 (305)
31 PRK14221 camphor resistance pr 26.7 1.8E+02 0.0039 19.5 4.6 42 31-72 35-77 (124)
32 TIGR03644 marine_trans_1 proba 26.1 94 0.002 25.3 3.6 42 31-72 126-174 (404)
33 COG4598 HisP ABC-type histidin 25.0 45 0.00097 25.2 1.4 25 48-72 132-156 (256)
34 PF06570 DUF1129: Protein of u 24.4 1.5E+02 0.0032 21.4 4.1 29 29-60 177-205 (206)
35 COG1967 Predicted membrane pro 23.5 1.1E+02 0.0024 23.8 3.3 31 31-61 26-56 (271)
36 COG2213 MtlA Phosphotransferas 23.3 1.5E+02 0.0032 24.8 4.1 25 76-100 315-339 (472)
37 PF13940 Ldr_toxin: Toxin Ldr, 22.9 62 0.0014 17.4 1.3 13 2-14 23-35 (35)
38 PF15208 Rab15_effector: Rab15 22.8 1.2E+02 0.0025 23.1 3.2 31 35-65 18-48 (236)
39 PF11654 DUF2665: Protein of u 22.6 99 0.0021 17.8 2.3 19 29-47 6-24 (47)
40 PF14163 SieB: Superinfection 21.9 2.7E+02 0.0058 18.9 6.0 53 39-101 6-58 (151)
41 KOG1440 CDP-diacylglycerol syn 21.8 1.6E+02 0.0034 24.5 4.1 61 32-94 331-396 (432)
42 PF04226 Transgly_assoc: Trans 21.8 1.6E+02 0.0036 16.5 3.2 23 32-54 25-47 (48)
43 PF03672 UPF0154: Uncharacteri 21.6 1.9E+02 0.0042 17.6 3.5 28 34-63 5-33 (64)
44 KOG4056 Translocase of outer m 21.1 1.2E+02 0.0026 21.4 2.9 28 34-61 10-37 (143)
45 COG3105 Uncharacterized protei 20.6 1.4E+02 0.0031 20.8 3.2 24 30-53 5-29 (138)
46 COG3763 Uncharacterized protei 20.6 1.7E+02 0.0037 18.2 3.2 19 35-55 13-31 (71)
47 PRK10132 hypothetical protein; 20.5 94 0.002 20.7 2.2 15 31-45 85-99 (108)
48 COG0575 CdsA CDP-diglyceride s 20.5 2.1E+02 0.0046 21.5 4.4 39 31-69 199-241 (265)
49 MTH00021 ND6 NADH dehydrogenas 20.1 1.3E+02 0.0029 21.6 3.1 27 73-99 39-65 (188)
No 1
>COG0004 AmtB Ammonia permease [Inorganic ion transport and metabolism]
Probab=99.96 E-value=2.6e-29 Score=199.36 Aligned_cols=103 Identities=23% Similarity=0.208 Sum_probs=98.3
Q ss_pred CchhhHHHHHhcCcCchhhhhccc--------ccCCCCChHHHHHHHHHHHHHHHHHHHH-HHHhcCCCCCcccccccch
Q 048011 1 MITRGLLENLRCLKWGAWRGCRNR--------IGLSVVEPWAAMVCLYFAPWVLIGLNIL-AIKLNFDDPLEGTRLHGGS 71 (104)
Q Consensus 1 ~~t~~~~~~~~~~k~~~~~~~nG~--------a~~~~v~p~~A~iiG~iag~~~~~~~~~-~~~~~iDD~vda~~vHg~~ 71 (104)
|++|++.||+++||||+.+++||+ |+|++|+||+|++||+++|++|+++.++ ++|+|+|||+|+||+||+|
T Consensus 241 ~l~w~~~e~~~~~Kp~~lg~~sG~vAGLVaITpaag~V~p~~A~iiGii~g~i~~~a~~~lk~~l~~DD~ld~f~vHGvg 320 (409)
T COG0004 241 ALGWMLIEWLRNGKPSLLGAASGAVAGLVAITPAAGFVSPWGALIIGLIAGVICYFAVKLLKKKLGVDDALDVFGVHGVG 320 (409)
T ss_pred HHHHHHHHHHHcCCCchhhhhhHHHhHHHhcCCcccccCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccceeccchh
Confidence 579999999999999999999999 9999999999999999999999999985 4569999999999999999
Q ss_pred h---------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 048011 72 G---------------------------FIGSQVTELSVIVGWVRETMGPLLVCFMPFI 103 (104)
Q Consensus 72 G---------------------------~l~~Ql~g~~~i~~w~~~~s~~i~~~l~~~~ 103 (104)
| |++.|+++++++..|+++.|+++++++|+++
T Consensus 321 Gi~G~i~~GiFa~~~~~~~~G~~~~~~~~l~~Q~~~v~~~~~~~~v~t~ii~~vl~~~~ 379 (409)
T COG0004 321 GIVGAILTGIFAAPAVGGGGGLFYGGGVQLGVQLLGVLVTIVYAFVVTFIILKVLKLII 379 (409)
T ss_pred hHHHHHHHHHhcCccccccCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9 8999999999999999999999999999874
No 2
>KOG0682 consensus Ammonia permease [Inorganic ion transport and metabolism]
Probab=99.96 E-value=1.9e-29 Score=203.14 Aligned_cols=101 Identities=32% Similarity=0.458 Sum_probs=99.5
Q ss_pred chhhHHHHHhcCcCchhhhhccc--------ccCCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccccchh-
Q 048011 2 ITRGLLENLRCLKWGAWRGCRNR--------IGLSVVEPWAAMVCLYFAPWVLIGLNILAIKLNFDDPLEGTRLHGGSG- 72 (104)
Q Consensus 2 ~t~~~~~~~~~~k~~~~~~~nG~--------a~~~~v~p~~A~iiG~iag~~~~~~~~~~~~~~iDD~vda~~vHg~~G- 72 (104)
+||++++|+++|||++.++|||+ |||++++||+|+++|++++++|+...++++|+|||||+|++++||+||
T Consensus 273 lt~~~~d~~~~~kwsv~~~cnG~laGlVaiT~gc~~v~pWaAiviG~va~~~~~~~~kL~~~lkvDDpl~~f~~Hgv~G~ 352 (500)
T KOG0682|consen 273 LTWLIIDYLRHGKWSVIGLCNGILAGLVAITPGCGVVEPWAAIVIGAVAGLVCNAANKLKERLKVDDPLDAFAVHGVGGI 352 (500)
T ss_pred hhhhhhhhhhcCCcchhhhHHHHHHHHHhhcCCCcccCcHHHHHHhHHHHHHHHHHHHHHHHhcCCcHHHHHHHhccccc
Confidence 68999999999999999999999 999999999999999999999999999999999999999999999999
Q ss_pred -----------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 048011 73 -----------------------------------FIGSQVTELSVIVGWVRETMGPLLVCFMPF 102 (104)
Q Consensus 73 -----------------------------------~l~~Ql~g~~~i~~w~~~~s~~i~~~l~~~ 102 (104)
|++.|+.+++++..|++++|+++++++||+
T Consensus 353 wG~I~~glFa~~~v~~~~~~~~~~~~G~~~~~~~kqLg~Qla~i~ai~~ws~~~t~iilf~l~ki 417 (500)
T KOG0682|consen 353 WGLIFTGLFAHDDVAAMDGTTIARISGLWMGHGFKQLGYQLAGILAIAAWSAVVTFIILFLLNKI 417 (500)
T ss_pred hhhheeeeeccCccccccCCCccCCCceeecchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 999999999999999999999999999986
No 3
>TIGR03644 marine_trans_1 probable ammonium transporter, marine subtype. Members of this protein family are well conserved subclass of putative ammonimum transporters, belonging to the much broader set of ammonium/methylammonium transporter described by TIGR00836. Species with this transporter tend to be marine bacteria. Partial phylogenetic profiling (PPP) picks a member of this protein family as the single best-scoring protein vs. a reference profile for the marine environment Genome Property for a large number of different query genomes. This finding by PPP suggests that this transporter family represents an important adaptation to the marine environment.
Probab=99.95 E-value=2.8e-28 Score=194.08 Aligned_cols=103 Identities=22% Similarity=0.176 Sum_probs=99.6
Q ss_pred CchhhHHHHHhcCcCchhhhhccc--------ccCCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccccchh
Q 048011 1 MITRGLLENLRCLKWGAWRGCRNR--------IGLSVVEPWAAMVCLYFAPWVLIGLNILAIKLNFDDPLEGTRLHGGSG 72 (104)
Q Consensus 1 ~~t~~~~~~~~~~k~~~~~~~nG~--------a~~~~v~p~~A~iiG~iag~~~~~~~~~~~~~~iDD~vda~~vHg~~G 72 (104)
+++|++++++++||+|+..++||+ |+|++++||+|+++|+++|++|++..++++|+|||||+|++|+||+||
T Consensus 254 ~l~~~~~~~~~~gk~~~~~~~nG~LAGLVaITa~~~~v~p~~A~iiG~iag~v~~~~~~~~~~~~iDD~~~~~~vHg~~G 333 (404)
T TIGR03644 254 AIAALLLTKLLFGKADLTMVLNGALAGLVAITAEPLTPSPLAATLIGAVGGVIVVFSIVLLDKLKIDDPVGAISVHGVAG 333 (404)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHhhhhhhccccCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcCchHhhhHHH
Confidence 368999999999999999999999 999999999999999999999999999999999999999999999999
Q ss_pred --------------HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 048011 73 --------------FIGSQVTELSVIVGWVRETMGPLLVCFMPFI 103 (104)
Q Consensus 73 --------------~l~~Ql~g~~~i~~w~~~~s~~i~~~l~~~~ 103 (104)
|++.|++|++++.+|++..|+++++++|++.
T Consensus 334 i~G~i~~glf~~~~~l~~Ql~g~~~~~~~~~~~s~~~~~il~~~~ 378 (404)
T TIGR03644 334 IWGTLVVPITNGDASFGAQLIGAATIFAWVFVTSLIVWFILKATM 378 (404)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999864
No 4
>TIGR00836 amt ammonium transporter. The mechanism of energy coupling, if any, to methyl-NH2 or NH3 uptake by the AmtB protein of E. coli is not entirely clear. NH4+ uniport driven by the pmf, energy independent NH3 facilitation, and NH4+/K+ antiport have been proposed as possible transport mechanisms. In Corynebacterium glutamicum and Arabidopsis thaliana, uptake via the Amt1 homologues of AmtB has been reported to be driven by the pmf.
Probab=99.94 E-value=3.3e-27 Score=187.88 Aligned_cols=103 Identities=27% Similarity=0.342 Sum_probs=98.2
Q ss_pred CchhhHHHHHhcCcCchhhhhccc--------ccCCCCChHHHHHHHHHHHHHHHHHHH-HHHHhcCCCCCcccccccch
Q 048011 1 MITRGLLENLRCLKWGAWRGCRNR--------IGLSVVEPWAAMVCLYFAPWVLIGLNI-LAIKLNFDDPLEGTRLHGGS 71 (104)
Q Consensus 1 ~~t~~~~~~~~~~k~~~~~~~nG~--------a~~~~v~p~~A~iiG~iag~~~~~~~~-~~~~~~iDD~vda~~vHg~~ 71 (104)
+++|++++++++||+|+..++||+ |+|++++||+|+++|+++|++|++..+ +++|+|||||+|++|+||+|
T Consensus 240 ~l~~~~~~~~~~gk~~~~~~~nG~LAGLVaita~a~~v~p~~A~viG~iag~~~~~~~~~l~~~~~iDD~~~~~~vHg~~ 319 (403)
T TIGR00836 240 GLTWLLIDWLKHGKPTLLGACNGILAGLVAITPGCGVVTPWGAIIIGLVAGVLCYLAVSKLKKKLKIDDPLDAFAVHGVG 319 (403)
T ss_pred HHHHHHHHHHhcCCCCHHHHHhhhhhhheeecCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcccchhhhhh
Confidence 368999999999999999999999 999999999999999999999999997 77899999999999999999
Q ss_pred h-----------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 048011 72 G-----------------------------FIGSQVTELSVIVGWVRETMGPLLVCFMPFI 103 (104)
Q Consensus 72 G-----------------------------~l~~Ql~g~~~i~~w~~~~s~~i~~~l~~~~ 103 (104)
| |++.|++|++++..|++..++++++++|++.
T Consensus 320 Gi~G~i~~glfa~~~~~~~~~g~~~~~~~~~l~~Ql~g~~~~~~~s~~~~~ii~~il~~~~ 380 (403)
T TIGR00836 320 GIWGLIATGLFAAPKVGGVGTGGLLGGNGKQLGVQLIGIAAIIAWAFVVTFIILKILDKTI 380 (403)
T ss_pred HHHHHHHHHHhcccccccccCCccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9 7889999999999999999999999999864
No 5
>PRK10666 ammonium transporter; Provisional
Probab=99.94 E-value=5.8e-27 Score=187.66 Aligned_cols=103 Identities=15% Similarity=0.002 Sum_probs=96.9
Q ss_pred CchhhHHHHHhcCcCchhhhhccc--------ccCCCCChHHHHHHHHHHHHHHHHHHHHHH-HhcCCCCCcccccccch
Q 048011 1 MITRGLLENLRCLKWGAWRGCRNR--------IGLSVVEPWAAMVCLYFAPWVLIGLNILAI-KLNFDDPLEGTRLHGGS 71 (104)
Q Consensus 1 ~~t~~~~~~~~~~k~~~~~~~nG~--------a~~~~v~p~~A~iiG~iag~~~~~~~~~~~-~~~iDD~vda~~vHg~~ 71 (104)
+++|++.+++++||+|+..++||+ |+|++++||+|+++|+++|++|++..+.++ |+|||||+|++|+||+|
T Consensus 264 ~l~~~~~~~~~~gk~~~~~~~nG~LaGLVaITa~a~~v~p~~A~iiG~vag~v~~~~~~~l~~~~~iDD~~~a~~vHgv~ 343 (428)
T PRK10666 264 ILGWVFGEWALRGKPSLLGACSGAIAGLVGVTPACGYVGVGGALIIGVVAGLAGLWGVTMLKRWLRVDDPCDVFGVHGVC 343 (428)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHhhhhhhcccccccCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcCccHhhhHh
Confidence 368999999999999999999999 999999999999999999999999887666 58999999999999999
Q ss_pred h----------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 048011 72 G----------------------------FIGSQVTELSVIVGWVRETMGPLLVCFMPFI 103 (104)
Q Consensus 72 G----------------------------~l~~Ql~g~~~i~~w~~~~s~~i~~~l~~~~ 103 (104)
| |++.|++|++++..|+++.|+++++++|++.
T Consensus 344 Gi~G~l~~glfa~~~~~~~~~~~g~~~~~ql~~Ql~g~~~~~~~~~~~t~ii~~il~~~~ 403 (428)
T PRK10666 344 GIVGCILTGIFAASSLGGVGYAEGVTMGHQVLVQLESIAITIVWSGVVAFIGYKLADLTV 403 (428)
T ss_pred HHHHHHHHHHhhchhccCccccCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9 6889999999999999999999999999864
No 6
>PF00909 Ammonium_transp: Ammonium Transporter Family; InterPro: IPR024041 This ammonium transporter domain consists of a duplication of 2 structural repeats of five helices each plus one extra C-terminal helix. It has been described as a channel that spans the membrane 11 times [].; PDB: 3B9Z_A 3B9Y_A 3B9W_A 3BHS_A 2B2H_A 2B2J_A 2B2F_A 2B2I_A 2NPG_A 2NUU_E ....
Probab=99.93 E-value=3.2e-26 Score=181.30 Aligned_cols=102 Identities=25% Similarity=0.348 Sum_probs=94.3
Q ss_pred chhhHHHHHhcCcCchhhhhccc--------ccCCCCChHHHHHHHHHHHHHHHHHHH-HHHHhcCCCCCcccccccchh
Q 048011 2 ITRGLLENLRCLKWGAWRGCRNR--------IGLSVVEPWAAMVCLYFAPWVLIGLNI-LAIKLNFDDPLEGTRLHGGSG 72 (104)
Q Consensus 2 ~t~~~~~~~~~~k~~~~~~~nG~--------a~~~~v~p~~A~iiG~iag~~~~~~~~-~~~~~~iDD~vda~~vHg~~G 72 (104)
++|++++++++||+|+..++||+ |+|++++||+|+++|+++|.++++..+ +++|+|||||+|++|+||+||
T Consensus 236 l~~~~~~~~~~gk~~~~~~~nG~laGlVaita~~~~v~p~~A~~iG~iag~i~~~~~~~l~~~~~iDD~~~~~~vHg~~G 315 (399)
T PF00909_consen 236 LTWLLISYLLSGKWSMVGICNGALAGLVAITAGAGYVTPWGALLIGAIAGLISYFGVSWLLKRLKIDDPVGAFAVHGVGG 315 (399)
T ss_dssp HHHHHHHHHHCSS--HHHHHHHHHHHHHHHTTTTTTS-HHHHHHHHHHHHHHHHHHHHHHHHHHTS-HTTGHHHHCHHHH
T ss_pred HHHHHhhhccccccchhhhhhhhhhhhhheecccCCCcHHHHHHhhhhHhhhhhhheecccceeEeccccceEeeeeccH
Confidence 68999999999999999999999 999999999999999999999999997 889999999999999999999
Q ss_pred ------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 048011 73 ------------------------------FIGSQVTELSVIVGWVRETMGPLLVCFMPFI 103 (104)
Q Consensus 73 ------------------------------~l~~Ql~g~~~i~~w~~~~s~~i~~~l~~~~ 103 (104)
|++.|++|++++..|++..|+++++++|++.
T Consensus 316 i~G~i~~glfa~~~~~~~~~~~~~~~~~~~~l~~Ql~g~~~~~~~~~~~s~i~~~~l~~~~ 376 (399)
T PF00909_consen 316 IWGTILTGLFASPEVNYSDGYGGLFYGNGRQLGIQLLGIVVILAWSFVVSYIIFKILKKFG 376 (399)
T ss_dssp HHHHHHHHHHCCCHHCSS-SSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhccccccccccccccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 6999999999999999999999999999874
No 7
>KOG3796 consensus Ammonium transporter RHBG [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]
Probab=97.86 E-value=2.7e-05 Score=62.36 Aligned_cols=90 Identities=18% Similarity=-0.008 Sum_probs=72.4
Q ss_pred hcCcCchhhhhccc--------ccCC-CCChHHHHHHHHHHHHHHHHHHHHH-----HHhcCCCCCcccccccchh----
Q 048011 11 RCLKWGAWRGCRNR--------IGLS-VVEPWAAMVCLYFAPWVLIGLNILA-----IKLNFDDPLEGTRLHGGSG---- 72 (104)
Q Consensus 11 ~~~k~~~~~~~nG~--------a~~~-~v~p~~A~iiG~iag~~~~~~~~~~-----~~~~iDD~vda~~vHg~~G---- 72 (104)
.+||.|....-|-. .+|+ ..+||.|+++|.+||.+.....+.+ +|+||-|.+++=-.||..|
T Consensus 268 ~~gkldMvhIqnatLAGGVAVGTsa~~~l~P~~AmiiG~iAG~vSvlG~kyltp~l~~~l~i~dtcgv~nlhgmpg~l~~ 347 (442)
T KOG3796|consen 268 PQGKLDMVHIQNATLAGGVAVGTSANLILSPYGAMIIGLIAGLVSVLGYKYLTPFLERKLGIHDTCGVHNLHGMPGLLGG 347 (442)
T ss_pred ccCccceEEeecchhcCceeeccchhcccCcHHHHHHHHHHHHHhhccceeechhhcccccccccccccccccchHHHHH
Confidence 36788888877766 4455 5689999999999999987666543 5789999999999999999
Q ss_pred ------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 048011 73 ------------------------------------FIGSQVTELSVIVGWVRETMGPLLVCFM 100 (104)
Q Consensus 73 ------------------------------------~l~~Ql~g~~~i~~w~~~~s~~i~~~l~ 100 (104)
|-..|+.|+.++..-+....++.=.+||
T Consensus 348 ~~~i~~a~~~t~e~yg~~l~~ifp~~~gng~~~~~sQa~~Ql~gl~~~l~~A~~gGlLtGllLk 411 (442)
T KOG3796|consen 348 IASIVFAVLATPESYGKGLYHIFPMIGGNGHGMATSQALYQLFGLLVTLVIALVGGLLTGLLLK 411 (442)
T ss_pred HHHHHHHhhcchhhcccccccccceecCCCccchhHHHHHHHHHHHHHHHHHHHhhhhhhheee
Confidence 7889999999888887776666555555
No 8
>PF11085 YqhR: Conserved membrane protein YqhR; InterPro: IPR024563 This family of proteins is conserved in the Bacillaceae family of the Firmicutes. Their function is not known.
Probab=81.11 E-value=19 Score=26.24 Aligned_cols=70 Identities=13% Similarity=0.032 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCC-----CcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 048011 34 AAMVCLYFAPWVLIGLNILAIKLNFDDP-----LEGTRLHGGSGFIGSQVTELSVIVGWVRETMGPLLVCFMPFI 103 (104)
Q Consensus 34 ~A~iiG~iag~~~~~~~~~~~~~~iDD~-----vda~~vHg~~G~l~~Ql~g~~~i~~w~~~~s~~i~~~l~~~~ 103 (104)
-++.+|+.||++--....+.+.++.-.. ++-|..|-.=-...-|++|++++.+.|.+.+++...++||+-
T Consensus 22 ~~~~iGf~gGliWs~v~yl~y~f~FT~v~P~~ll~Pf~~g~wk~t~~G~~igi~~~gv~Si~aAllY~~~l~k~~ 96 (173)
T PF11085_consen 22 KVLEIGFFGGLIWSLVRYLAYFFHFTEVGPNFLLEPFALGDWKNTWLGNLIGIVFIGVFSIVAALLYYALLKKFK 96 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccccccChhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4678999999886666666555554322 111222221114556899999999999999999999999863
No 9
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=69.44 E-value=6.5 Score=29.21 Aligned_cols=25 Identities=20% Similarity=0.185 Sum_probs=22.7
Q ss_pred HHHHHHHHhcCCCCCcccccccchh
Q 048011 48 GLNILAIKLNFDDPLEGTRLHGGSG 72 (104)
Q Consensus 48 ~~~~~~~~~~iDD~vda~~vHg~~G 72 (104)
-+.++++|+++.|--|.||.|.-||
T Consensus 121 ~a~ellkrlrl~~~adr~plhlsgg 145 (242)
T COG4161 121 RAEKLLKRLRLKPYADRYPLHLSGG 145 (242)
T ss_pred HHHHHHHHhccccccccCceecccc
Confidence 4567889999999999999999999
No 10
>COG4120 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=62.85 E-value=10 Score=29.55 Aligned_cols=36 Identities=17% Similarity=0.031 Sum_probs=26.0
Q ss_pred cCCCCChHHHHHHHHHHHHHHHHHHH-HHHHhcCCCC
Q 048011 26 GLSVVEPWAAMVCLYFAPWVLIGLNI-LAIKLNFDDP 61 (104)
Q Consensus 26 ~~~~v~p~~A~iiG~iag~~~~~~~~-~~~~~~iDD~ 61 (104)
-..-++||-|.+++.+||.+.=.... +..|.||+|=
T Consensus 52 i~~G~nP~~at~~a~~AG~~aG~it~~l~~k~kI~~L 88 (293)
T COG4120 52 IAAGVNPFLATLVAMVAGAAAGMITGLLNVKFKILTL 88 (293)
T ss_pred HHccCCHHHHHHHHHHHHHHHHHHHHHHHHhccHHHH
Confidence 34457999999999999987544444 4457788764
No 11
>PF05552 TM_helix: Conserved TM helix; InterPro: IPR008910 This alignment represents a conserved transmembrane helix as well as some flanking sequence. It is often found in association with a Mechanosensitive (MS) channel IPR006685 from INTERPRO.; PDB: 2VV5_F 2OAU_E.
Probab=62.54 E-value=5.6 Score=22.82 Aligned_cols=31 Identities=26% Similarity=0.209 Sum_probs=19.2
Q ss_pred hHHHHHHHHHHHHH----HHHHHHHHHHhcCCCCC
Q 048011 32 PWAAMVCLYFAPWV----LIGLNILAIKLNFDDPL 62 (104)
Q Consensus 32 p~~A~iiG~iag~~----~~~~~~~~~~~~iDD~v 62 (104)
..+|+++=++|-.+ .....+.++|.++||.+
T Consensus 18 iv~AilIl~vG~~va~~v~~~~~~~l~~~~~d~~l 52 (53)
T PF05552_consen 18 IVGAILILIVGWWVAKFVRKLVRRLLEKRGVDKTL 52 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCTS-HHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccc
Confidence 34566666555544 44556677888999865
No 12
>PF11167 DUF2953: Protein of unknown function (DUF2953); InterPro: IPR021338 This family of proteins has no known function.
Probab=56.34 E-value=34 Score=19.33 Aligned_cols=29 Identities=10% Similarity=0.059 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 048011 33 WAAMVCLYFAPWVLIGLNILAIKLNFDDP 61 (104)
Q Consensus 33 ~~A~iiG~iag~~~~~~~~~~~~~~iDD~ 61 (104)
..|++.|.+-++.+.....+.+++++++|
T Consensus 10 ~Tgi~~G~l~~~~~~l~~~l~~~~~~~~~ 38 (53)
T PF11167_consen 10 DTGILYGLLWAIKGILYGFLSRRFKIKKP 38 (53)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCCCC
Confidence 56778888888888887788788888665
No 13
>PLN02594 phosphatidate cytidylyltransferase
Probab=53.49 E-value=26 Score=28.07 Aligned_cols=46 Identities=20% Similarity=0.209 Sum_probs=36.6
Q ss_pred hHHHHHHHHHHHHHHH----HHHHHHHHhcCCCCCcccccccchh---HHHHHHH
Q 048011 32 PWAAMVCLYFAPWVLI----GLNILAIKLNFDDPLEGTRLHGGSG---FIGSQVT 79 (104)
Q Consensus 32 p~~A~iiG~iag~~~~----~~~~~~~~~~iDD~vda~~vHg~~G---~l~~Ql~ 79 (104)
.+.++++|.+++++.. +.+.+++.+||-|-=|.+|=|| | .+=.|++
T Consensus 235 ~~h~l~l~l~aSl~a~fGdlfaS~~KR~~~IKDfG~~IPGHG--GilDRfDs~l~ 287 (342)
T PLN02594 235 QWHALSLGLFASIIAPFGGFFASGFKRAFKIKDFGDSIPGHG--GITDRMDCQMV 287 (342)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHccCCCcccCccCCCc--cccccccHHHH
Confidence 5789999999998865 4566777899999999999997 6 4445554
No 14
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=45.15 E-value=36 Score=19.86 Aligned_cols=23 Identities=17% Similarity=0.209 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 048011 33 WAAMVCLYFAPWVLIGLNILAIK 55 (104)
Q Consensus 33 ~~A~iiG~iag~~~~~~~~~~~~ 55 (104)
..++++|++.|.++.....+..|
T Consensus 25 l~~f~~G~llg~l~~~~~~~~~r 47 (68)
T PF06305_consen 25 LIAFLLGALLGWLLSLPSRLRLR 47 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788888888877776665443
No 15
>COG1079 Uncharacterized ABC-type transport system, permease component [General function prediction only]
Probab=40.87 E-value=69 Score=25.24 Aligned_cols=44 Identities=20% Similarity=0.273 Sum_probs=35.8
Q ss_pred CCChHHHHHHHHHHHHHHHHHHH-HHHHhcCCCCCcccccccchh
Q 048011 29 VVEPWAAMVCLYFAPWVLIGLNI-LAIKLNFDDPLEGTRLHGGSG 72 (104)
Q Consensus 29 ~v~p~~A~iiG~iag~~~~~~~~-~~~~~~iDD~vda~~vHg~~G 72 (104)
.-+||.+++.|.++|.++-+..- .-.|+|-|.-+.-.++|.++=
T Consensus 59 t~spw~gl~~a~l~g~l~~ll~a~~ti~l~~nqiisG~alnl~a~ 103 (304)
T COG1079 59 TGSPWLGLLAAALVGALFGLLHAFLTIKLRANQIISGLALNLLAS 103 (304)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 45899999999999988766654 567899999988888887664
No 16
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=40.56 E-value=19 Score=25.78 Aligned_cols=35 Identities=9% Similarity=0.174 Sum_probs=15.9
Q ss_pred ccccchh--HHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 048011 66 RLHGGSG--FIGSQVTELSVIVGWVRETMGPLLVCFMPF 102 (104)
Q Consensus 66 ~vHg~~G--~l~~Ql~g~~~i~~w~~~~s~~i~~~l~~~ 102 (104)
.-||-+| |+-.+. ....++|..+.-++++++++++
T Consensus 15 ~~~~~~gmp~ld~~t--~~~q~~~~lI~F~iL~~ll~k~ 51 (181)
T PRK13454 15 HAASAPGMPQLDFST--FPNQIFWLLVTLVAIYFVLTRV 51 (181)
T ss_pred cccCCCCCCCCcHHh--cchHHHHHHHHHHHHHHHHHHH
Confidence 4578788 222221 1123344444445555555443
No 17
>PF04172 LrgB: LrgB-like family ; InterPro: IPR007300 The two products of the lrgAB operon are potential membrane proteins, and LrgA and LrgB are both thought to control murein hydrolase activity and penicillin tolerance [].
Probab=39.56 E-value=40 Score=25.12 Aligned_cols=24 Identities=17% Similarity=0.099 Sum_probs=16.1
Q ss_pred HHHHHH-HHHHHHHHHHhcCCCCCc
Q 048011 40 YFAPWV-LIGLNILAIKLNFDDPLE 63 (104)
Q Consensus 40 ~iag~~-~~~~~~~~~~~~iDD~vd 63 (104)
.+.|++ ..+...+++++|||||+.
T Consensus 141 vitGi~Ga~~g~~llk~~~I~~~~A 165 (215)
T PF04172_consen 141 VITGILGAVLGPPLLKLLRIKDPVA 165 (215)
T ss_pred HHHhhHHHHhHHHHHhHcccccHHH
Confidence 344444 344667888899999954
No 18
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=37.40 E-value=68 Score=21.93 Aligned_cols=14 Identities=7% Similarity=-0.100 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHH
Q 048011 33 WAAMVCLYFAPWVL 46 (104)
Q Consensus 33 ~~A~iiG~iag~~~ 46 (104)
...+++|+++|++-
T Consensus 66 i~~Ii~gv~aGvIg 79 (122)
T PF01102_consen 66 IIGIIFGVMAGVIG 79 (122)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred eeehhHHHHHHHHH
Confidence 46788888888764
No 19
>TIGR00659 conserved hypothetical protein TIGR00659. Members of this small but broadly distibuted (Gram-positive, Gram-negative, and Archaeal) family appear to have multiple transmembrane segments. The function is unknown. A homolog, LrgB of Staphylococcus aureus, in the same small superfamily but in an outgroup to this subfamily, is regulated by LytSR and is suggested to act as a murein hydrolase. Of the three paralogous proteins in B. subtilis, one is a full length member of this family, one lacks the C-terminal 60 residues and has an additional 128 N-terminal residues but branches within the family in a phylogenetic tree, and one is closely related to LrgB and part of the outgroup.
Probab=37.28 E-value=55 Score=24.66 Aligned_cols=31 Identities=3% Similarity=-0.003 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHHhcCCCCCc
Q 048011 33 WAAMVCLYFAPWV-LIGLNILAIKLNFDDPLE 63 (104)
Q Consensus 33 ~~A~iiG~iag~~-~~~~~~~~~~~~iDD~vd 63 (104)
--+...-.+.|++ ......+++++|++||+.
T Consensus 144 sLta~~vvitGi~Ga~~g~~ll~~~~i~~~~A 175 (226)
T TIGR00659 144 AVTAVFVILTGLLGTVFGPMVLRYFRVKNEIA 175 (226)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHH
Confidence 3334444555655 556677888899999964
No 20
>cd03197 GST_C_mPGES2 GST_C family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH, or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature, and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated and a C-terminal soluble domain with a GST-like structure. The C-terminus contains two structural domains a N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. The GST active site is located in a cleft between t
Probab=36.77 E-value=48 Score=23.36 Aligned_cols=37 Identities=14% Similarity=0.149 Sum_probs=25.6
Q ss_pred ccCCCCChHHHHHHHHHHHHHHHHHH-HHHHHhcC-CCC
Q 048011 25 IGLSVVEPWAAMVCLYFAPWVLIGLN-ILAIKLNF-DDP 61 (104)
Q Consensus 25 a~~~~v~p~~A~iiG~iag~~~~~~~-~~~~~~~i-DD~ 61 (104)
..++..+++.=..+=.+|+..+++.+ ++++|.+| |||
T Consensus 42 ~~~~~f~~~er~~~~~~Ga~aM~~isk~lkk~~~i~~D~ 80 (149)
T cd03197 42 TPSGYFGYWEKFFAKYVGAAAMYLISKYLKKPRLLQDDV 80 (149)
T ss_pred hcCCCccHHHHHHHHHhhHHHHHHHHHHhccccCCCchH
Confidence 45666677777777777777765555 45556789 776
No 21
>PF01148 CTP_transf_1: Cytidylyltransferase family; InterPro: IPR000374 Phosphatidate cytidylyltransferase (2.7.7.41 from EC) [, , ] (also known as CDP- diacylglycerol synthase) (CDS) is the enzyme that catalyzes the synthesis of CDP-diacylglycerol from CTP and phosphatidate (PA): CTP + phosphatidate = diphosphate + CDP-diacylglycerol CDP-diacylglycerol is an important branch point intermediate in both prokaryotic and eukaryotic organisms. CDS is a membrane-bound enzyme.; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0016020 membrane
Probab=35.78 E-value=68 Score=23.04 Aligned_cols=40 Identities=18% Similarity=0.120 Sum_probs=32.6
Q ss_pred CChHHHHHHHHHHHHHHHHHH----HHHHHhcCCCCCccccccc
Q 048011 30 VEPWAAMVCLYFAPWVLIGLN----ILAIKLNFDDPLEGTRLHG 69 (104)
Q Consensus 30 v~p~~A~iiG~iag~~~~~~~----~~~~~~~iDD~vda~~vHg 69 (104)
.+++.+++++.+++++-..+. .++++.++-|-=+-+|=||
T Consensus 193 ~~~~~~~~~~~~~~i~~~~gdl~~S~~KR~~~iKD~g~lipghG 236 (259)
T PF01148_consen 193 LSWWQAILISLLASIVEAFGDLFESAIKRDAGIKDSGNLIPGHG 236 (259)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccCcC
Confidence 678999999999888865444 4567789999999999776
No 22
>PRK10711 hypothetical protein; Provisional
Probab=33.00 E-value=72 Score=24.13 Aligned_cols=26 Identities=12% Similarity=0.163 Sum_probs=17.8
Q ss_pred HHHHHHHH-HHHHHHHHHHhcCCCCCc
Q 048011 38 CLYFAPWV-LIGLNILAIKLNFDDPLE 63 (104)
Q Consensus 38 iG~iag~~-~~~~~~~~~~~~iDD~vd 63 (104)
.=.+.|++ ..++..+++++||+||+.
T Consensus 150 ~ViitGi~Ga~~g~~llk~~rI~~~~A 176 (231)
T PRK10711 150 CVIFVGILGAVFGHTLLNAMRIRTKAA 176 (231)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCHHH
Confidence 33455555 456677888899999954
No 23
>COG2056 Predicted permease [General function prediction only]
Probab=31.22 E-value=18 Score=29.70 Aligned_cols=30 Identities=17% Similarity=0.056 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCCc
Q 048011 34 AAMVCLYFAPWVLIGLNILAIKLNFDDPLE 63 (104)
Q Consensus 34 ~A~iiG~iag~~~~~~~~~~~~~~iDD~vd 63 (104)
.++++|+++|++.++.++..+|.+.||..+
T Consensus 262 ~smilgal~gliv~~~~gv~~~ke~d~~~~ 291 (444)
T COG2056 262 DSMILGALAGLIVFFLSGVIKWKETDDVFT 291 (444)
T ss_pred ccchHHHHHHHHHHHHhcceehhhhHHHHH
Confidence 488999999999999999999989999753
No 24
>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD.
Probab=30.10 E-value=53 Score=20.71 Aligned_cols=15 Identities=13% Similarity=0.359 Sum_probs=12.5
Q ss_pred ChHHHHHHHHHHHHH
Q 048011 31 EPWAAMVCLYFAPWV 45 (104)
Q Consensus 31 ~p~~A~iiG~iag~~ 45 (104)
+||.|+.+.+..|++
T Consensus 72 ~P~~svgiAagvG~l 86 (94)
T PF05957_consen 72 NPWQSVGIAAGVGFL 86 (94)
T ss_pred ChHHHHHHHHHHHHH
Confidence 699999888888776
No 25
>PRK04288 antiholin-like protein LrgB; Provisional
Probab=29.38 E-value=88 Score=23.68 Aligned_cols=25 Identities=8% Similarity=0.130 Sum_probs=17.3
Q ss_pred HHHHHHH-HHHHHHHHHHhcCCCCCc
Q 048011 39 LYFAPWV-LIGLNILAIKLNFDDPLE 63 (104)
Q Consensus 39 G~iag~~-~~~~~~~~~~~~iDD~vd 63 (104)
=.+.|++ ...+..+++++||+||+.
T Consensus 156 ViitGi~Gai~g~~llk~~~I~~~~a 181 (232)
T PRK04288 156 VIFNAVIIYALGAKFLKLFRIKNPIA 181 (232)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCHHH
Confidence 3455554 456667788899999864
No 26
>PRK10404 hypothetical protein; Provisional
Probab=29.33 E-value=51 Score=21.65 Aligned_cols=15 Identities=20% Similarity=0.330 Sum_probs=12.3
Q ss_pred ChHHHHHHHHHHHHH
Q 048011 31 EPWAAMVCLYFAPWV 45 (104)
Q Consensus 31 ~p~~A~iiG~iag~~ 45 (104)
+||.++-|++..|++
T Consensus 79 ~Pw~avGiaagvGll 93 (101)
T PRK10404 79 KPWQGIGVGAAVGLV 93 (101)
T ss_pred CcHHHHHHHHHHHHH
Confidence 799999888777765
No 27
>TIGR00807 malonate_madL malonate transporter, MadL subunit. The MSS family includes the monobasic malonate:Na+ symporter of Malonomonas rubra. It consists of two integral membrane proteins, MadL and MadM. The transporter is believed to catalyze the electroneutral reversible uptake of H+-malonate with one Na+, and both subunits have been shown to be essential for activity.
Probab=28.17 E-value=1.4e+02 Score=20.55 Aligned_cols=58 Identities=16% Similarity=-0.095 Sum_probs=40.2
Q ss_pred HHHhcCcCchhhhhccc---------------ccCCCC----ChHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccc
Q 048011 8 ENLRCLKWGAWRGCRNR---------------IGLSVV----EPWAAMVCLYFAPWVLIGLNILAIKLNFDDPLEGT 65 (104)
Q Consensus 8 ~~~~~~k~~~~~~~nG~---------------a~~~~v----~p~~A~iiG~iag~~~~~~~~~~~~~~iDD~vda~ 65 (104)
+|+++|.+-....-.|+ |.-+.+ .-+-|++-|..+-.+|+...+++.|++=|.|+-+.
T Consensus 48 ~~l~k~G~l~~~te~Gi~FW~aMYIPIVVAMAA~QNVv~Al~gG~~Allagi~av~~~~~~i~~l~r~g~~~~~~a~ 124 (125)
T TIGR00807 48 ELLAKRGHLPQVTQFGVGFWSAMYIPIVVAMAAGQNVVAALSGGMLALLASVAALIVTVLVIRWISKSSYGTYEPAV 124 (125)
T ss_pred HHHHHcCCCChhHHhHHHHHHccHhHHHHHHhhhchhHHHhcCCchHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCC
Confidence 45556666666666666 222222 24567888888888899999999999988887654
No 28
>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins.
Probab=28.11 E-value=91 Score=23.52 Aligned_cols=36 Identities=19% Similarity=0.199 Sum_probs=29.3
Q ss_pred cCCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 048011 26 GLSVVEPWAAMVCLYFAPWVLIGLNILAIKLNFDDP 61 (104)
Q Consensus 26 ~~~~v~p~~A~iiG~iag~~~~~~~~~~~~~~iDD~ 61 (104)
-++...||..+.+|.+...+-+...++..+-++.+|
T Consensus 59 l~d~~gp~~~l~iG~~~~~~GY~~~~l~~~~~i~~~ 94 (250)
T PF06813_consen 59 LYDRFGPWVVLLIGAVLGFVGYGLLWLAVSGRIPSL 94 (250)
T ss_pred HHHhcchHHHHHHHHHHHHHHHHHHHHHHhCccCcc
Confidence 357888999999999999998888877766677654
No 29
>PRK11624 cdsA CDP-diglyceride synthase; Provisional
Probab=26.98 E-value=1.3e+02 Score=23.02 Aligned_cols=39 Identities=15% Similarity=0.184 Sum_probs=29.6
Q ss_pred ChHHHHHHHHHHHHHHHHH----HHHHHHhcCCCCCccccccc
Q 048011 31 EPWAAMVCLYFAPWVLIGL----NILAIKLNFDDPLEGTRLHG 69 (104)
Q Consensus 31 ~p~~A~iiG~iag~~~~~~----~~~~~~~~iDD~vda~~vHg 69 (104)
+++..++.|.+.++..... +.++++.++.|.=..+|=||
T Consensus 216 ~~~~~~~~~~~~~~~~~~GDL~ES~lKR~~gVKDSG~llPGHG 258 (285)
T PRK11624 216 APVTLLICSIVAALASVLGDLTESMFKREAGIKDSGHLIPGHG 258 (285)
T ss_pred cHHHHHHHHHHHHHHHHHhHHHHHHHhhccCCCCCcCcCCCcC
Confidence 5677778888777776543 34566789999999999886
No 30
>PF06622 SepQ: SepQ protein; InterPro: IPR009532 This family consists of several enterobacterial SepQ proteins from Escherichia coli and Citrobacter rodentium. The function of this family is unclear.
Probab=26.87 E-value=30 Score=26.86 Aligned_cols=22 Identities=18% Similarity=0.175 Sum_probs=18.8
Q ss_pred HHHHHhcCCCCCcccccccchh
Q 048011 51 ILAIKLNFDDPLEGTRLHGGSG 72 (104)
Q Consensus 51 ~~~~~~~iDD~vda~~vHg~~G 72 (104)
..++..|=||..+....|.+||
T Consensus 253 h~lrn~kkdd~i~~~gyhlfgg 274 (305)
T PF06622_consen 253 HMLRNIKKDDIINSDGYHLFGG 274 (305)
T ss_pred HhhhcccccccccCcceEEecc
Confidence 3456678899999999999998
No 31
>PRK14221 camphor resistance protein CrcB; Provisional
Probab=26.72 E-value=1.8e+02 Score=19.55 Aligned_cols=42 Identities=21% Similarity=0.228 Sum_probs=24.4
Q ss_pred ChHHHHHHHHHHHHHHHHH-HHHHHHhcCCCCCcccccccchh
Q 048011 31 EPWAAMVCLYFAPWVLIGL-NILAIKLNFDDPLEGTRLHGGSG 72 (104)
Q Consensus 31 ~p~~A~iiG~iag~~~~~~-~~~~~~~~iDD~vda~~vHg~~G 72 (104)
-||+-+++=.+++++.-+. ....++.+.+++...+=.=|++|
T Consensus 35 fP~gTl~vNi~G~fllG~~~~~~~~~~~~~~~~~~~l~tGf~G 77 (124)
T PRK14221 35 FPWGTLFVNYLGIFCLIYLVKGYLVYKGTSKGLILALGTGFCG 77 (124)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHhc
Confidence 3666666666666654322 23344555666665555667777
No 32
>TIGR03644 marine_trans_1 probable ammonium transporter, marine subtype. Members of this protein family are well conserved subclass of putative ammonimum transporters, belonging to the much broader set of ammonium/methylammonium transporter described by TIGR00836. Species with this transporter tend to be marine bacteria. Partial phylogenetic profiling (PPP) picks a member of this protein family as the single best-scoring protein vs. a reference profile for the marine environment Genome Property for a large number of different query genomes. This finding by PPP suggests that this transporter family represents an important adaptation to the marine environment.
Probab=26.10 E-value=94 Score=25.28 Aligned_cols=42 Identities=12% Similarity=0.124 Sum_probs=28.6
Q ss_pred ChHHHHHHHHH-HHHHHHHHHH------HHHHhcCCCCCcccccccchh
Q 048011 31 EPWAAMVCLYF-APWVLIGLNI------LAIKLNFDDPLEGTRLHGGSG 72 (104)
Q Consensus 31 ~p~~A~iiG~i-ag~~~~~~~~------~~~~~~iDD~vda~~vHg~~G 72 (104)
++.+-++..++ .+++|....+ ++.+++.-|--+..+||.++|
T Consensus 126 ~~~~~~v~~~~~~~~vY~~~ahW~W~~GwL~~lG~~DfAG~~vVH~~gG 174 (404)
T TIGR03644 126 KLWPFLLFAVVLTGFIYPIEGSWTWGGGWLDDLGFSDFAGSGIVHMAGA 174 (404)
T ss_pred cHHHHHHHHHHHHHHHHhhhhhheeCchHHhhcCchhhcCceEEecchH
Confidence 33333443333 4455555443 477899999999999999999
No 33
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=24.97 E-value=45 Score=25.25 Aligned_cols=25 Identities=12% Similarity=0.133 Sum_probs=22.5
Q ss_pred HHHHHHHHhcCCCCCcccccccchh
Q 048011 48 GLNILAIKLNFDDPLEGTRLHGGSG 72 (104)
Q Consensus 48 ~~~~~~~~~~iDD~vda~~vHg~~G 72 (104)
-+..++.|.+++|--|+.|.|.-||
T Consensus 132 ~Ae~~L~kVGi~ek~~~YP~~LSGG 156 (256)
T COG4598 132 RAEKYLAKVGIAEKADAYPAHLSGG 156 (256)
T ss_pred HHHHHHHHhCchhhhhcCccccCch
Confidence 4567888999999999999999999
No 34
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=24.44 E-value=1.5e+02 Score=21.41 Aligned_cols=29 Identities=24% Similarity=0.287 Sum_probs=19.4
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 048011 29 VVEPWAAMVCLYFAPWVLIGLNILAIKLNFDD 60 (104)
Q Consensus 29 ~v~p~~A~iiG~iag~~~~~~~~~~~~~~iDD 60 (104)
.++||..+++|+++-.+. ..+++|++|-+
T Consensus 177 ~l~~~~~iiig~i~~~~~---~~lkkk~~i~~ 205 (206)
T PF06570_consen 177 VLPPWVYIIIGVIAFALR---FYLKKKYNITG 205 (206)
T ss_pred CCCHHHHHHHHHHHHHHH---HHHHHHhCCCC
Confidence 678999998886665544 34456677643
No 35
>COG1967 Predicted membrane protein [Function unknown]
Probab=23.46 E-value=1.1e+02 Score=23.84 Aligned_cols=31 Identities=13% Similarity=0.087 Sum_probs=19.5
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 048011 31 EPWAAMVCLYFAPWVLIGLNILAIKLNFDDP 61 (104)
Q Consensus 31 ~p~~A~iiG~iag~~~~~~~~~~~~~~iDD~ 61 (104)
+|-.-+.-+++-|+......+.++|+|+|+-
T Consensus 26 n~vntvtyaiilg~Av~~~yk~lk~L~i~id 56 (271)
T COG1967 26 NPVNTVTYAIILGLAVILVYKLLKRLKIKID 56 (271)
T ss_pred CccchHHHHHHHHHHHHHHHHHHhccCCCcc
Confidence 3333444555566666777788888887654
No 36
>COG2213 MtlA Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism]
Probab=23.30 E-value=1.5e+02 Score=24.76 Aligned_cols=25 Identities=8% Similarity=-0.154 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q 048011 76 SQVTELSVIVGWVRETMGPLLVCFM 100 (104)
Q Consensus 76 ~Ql~g~~~i~~w~~~~s~~i~~~l~ 100 (104)
--++|+.+...-||+++.++++.-|
T Consensus 315 ~~i~gV~~aa~VSFvvssliLk~~k 339 (472)
T COG2213 315 GVIAGVLVAALVSFVVSSLILKTSK 339 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4478888888888888888887655
No 37
>PF13940 Ldr_toxin: Toxin Ldr, type I toxin-antitoxin system
Probab=22.87 E-value=62 Score=17.42 Aligned_cols=13 Identities=31% Similarity=0.210 Sum_probs=10.0
Q ss_pred chhhHHHHHhcCc
Q 048011 2 ITRGLLENLRCLK 14 (104)
Q Consensus 2 ~t~~~~~~~~~~k 14 (104)
+++++++|++++|
T Consensus 23 i~s~iv~w~~~RK 35 (35)
T PF13940_consen 23 IASLIVGWLRNRK 35 (35)
T ss_pred HHHHHHHHHHhcC
Confidence 4678888888876
No 38
>PF15208 Rab15_effector: Rab15 effector
Probab=22.79 E-value=1.2e+02 Score=23.07 Aligned_cols=31 Identities=26% Similarity=0.383 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCCccc
Q 048011 35 AMVCLYFAPWVLIGLNILAIKLNFDDPLEGT 65 (104)
Q Consensus 35 A~iiG~iag~~~~~~~~~~~~~~iDD~vda~ 65 (104)
-.+.=+++..+...+.+++|.++..||.+-+
T Consensus 18 ~~~cev~S~avvhAsqklkEYLgFedP~skl 48 (236)
T PF15208_consen 18 LVICEVVSQAVVHASQKLKEYLGFEDPLSKL 48 (236)
T ss_pred chHHHHHHHHHHHHHHHHHHHhCccCcHHhc
Confidence 3456678888899999999999999998754
No 39
>PF11654 DUF2665: Protein of unknown function (DUF2665); InterPro: IPR024242 This entry represents the non classical export protein 1 family. Family members are Involved in a novel pathway of export of proteins that lack a cleavable signal sequence [].; GO: 0009306 protein secretion
Probab=22.59 E-value=99 Score=17.76 Aligned_cols=19 Identities=16% Similarity=0.100 Sum_probs=15.2
Q ss_pred CCChHHHHHHHHHHHHHHH
Q 048011 29 VVEPWAAMVCLYFAPWVLI 47 (104)
Q Consensus 29 ~v~p~~A~iiG~iag~~~~ 47 (104)
+.+|.-|+++|..|..++-
T Consensus 6 ~lDP~~av~iG~~ayyl~e 24 (47)
T PF11654_consen 6 FLDPLFAVFIGTSAYYLYE 24 (47)
T ss_pred hhhhHHHHHHHHHHHHHHH
Confidence 4689999999988877654
No 40
>PF14163 SieB: Superinfection exclusion protein B
Probab=21.89 E-value=2.7e+02 Score=18.93 Aligned_cols=53 Identities=15% Similarity=-0.015 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 048011 39 LYFAPWVLIGLNILAIKLNFDDPLEGTRLHGGSGFIGSQVTELSVIVGWVRETMGPLLVCFMP 101 (104)
Q Consensus 39 G~iag~~~~~~~~~~~~~~iDD~vda~~vHg~~G~l~~Ql~g~~~i~~w~~~~s~~i~~~l~~ 101 (104)
-..++++.+.-.++++++++|++.+- ....+|.+..+.-++..+-++-+..+.
T Consensus 6 ~i~~~~llf~P~~~~~~l~l~~~~~~----------y~~~i~~~fl~s~s~li~~~~~~~~~~ 58 (151)
T PF14163_consen 6 IIFSGLLLFLPESLLEWLNLDKFEIK----------YQPWIGLIFLFSVSYLIAQLLSFIYKE 58 (151)
T ss_pred HHHHHHHHHCCHHHHHHhCcchHHHh----------cchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666677789999999998643 245677777777777777777666543
No 41
>KOG1440 consensus CDP-diacylglycerol synthase [Lipid transport and metabolism]
Probab=21.82 E-value=1.6e+02 Score=24.45 Aligned_cols=61 Identities=15% Similarity=0.120 Sum_probs=44.2
Q ss_pred hHHHHHHHHHHHHHH----HHHHHHHHHhcCCCCCcccccccchh-HHHHHHHHHHHHHHHHHHHHHH
Q 048011 32 PWAAMVCLYFAPWVL----IGLNILAIKLNFDDPLEGTRLHGGSG-FIGSQVTELSVIVGWVRETMGP 94 (104)
Q Consensus 32 p~~A~iiG~iag~~~----~~~~~~~~~~~iDD~vda~~vHg~~G-~l~~Ql~g~~~i~~w~~~~s~~ 94 (104)
.|.++..|..|.++. ++++-+++.+||-|-=|.+|=||.== .+=.|. +..+.+++..-|++
T Consensus 331 ~~Hsial~~faS~iaPFGGFfASgfKRafKiKDFG~~IPGHGGI~DR~DCQ~--lma~Fay~Yi~SFI 396 (432)
T KOG1440|consen 331 QFHSIALGLFASFIAPFGGFFASGFKRAFKIKDFGDSIPGHGGITDRMDCQI--LMATFAYVYIQSFI 396 (432)
T ss_pred HHHHHHHHHHHHhhccchhHHHHHhHHhhcCCcccccCCCCCCcchhhHHHH--HHHHHHHHHHHHHh
Confidence 478999999998875 46677888899999999999996221 555676 34455555555554
No 42
>PF04226 Transgly_assoc: Transglycosylase associated protein; InterPro: IPR007341 This bacterial protein is predicted to be an integral membrane protein. Some family members have been annotated as transglycosylase-associated proteins, but no experimental evidence is provided. This family was annotated based on the information in P76011 from SWISSPROT.; GO: 0016021 integral to membrane
Probab=21.82 E-value=1.6e+02 Score=16.47 Aligned_cols=23 Identities=13% Similarity=0.336 Sum_probs=17.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Q 048011 32 PWAAMVCLYFAPWVLIGLNILAI 54 (104)
Q Consensus 32 p~~A~iiG~iag~~~~~~~~~~~ 54 (104)
-++.++...+++++..+..+..+
T Consensus 25 ~~~~~i~aviGAiill~i~~~i~ 47 (48)
T PF04226_consen 25 SWGSFIVAVIGAIILLFIYRLIR 47 (48)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHh
Confidence 47778888888888877776654
No 43
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=21.61 E-value=1.9e+02 Score=17.59 Aligned_cols=28 Identities=14% Similarity=0.096 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-hcCCCCCc
Q 048011 34 AAMVCLYFAPWVLIGLNILAIK-LNFDDPLE 63 (104)
Q Consensus 34 ~A~iiG~iag~~~~~~~~~~~~-~~iDD~vd 63 (104)
-|+++|+++|+. ++.+..+| ++=.+|++
T Consensus 5 lali~G~~~Gff--~ar~~~~k~l~~NPpin 33 (64)
T PF03672_consen 5 LALIVGAVIGFF--IARKYMEKQLKENPPIN 33 (64)
T ss_pred HHHHHHHHHHHH--HHHHHHHHHHHHCCCCC
Confidence 356666655543 34444443 55566654
No 44
>KOG4056 consensus Translocase of outer mitochondrial membrane complex, subunit TOM20 [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.09 E-value=1.2e+02 Score=21.41 Aligned_cols=28 Identities=25% Similarity=0.271 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 048011 34 AAMVCLYFAPWVLIGLNILAIKLNFDDP 61 (104)
Q Consensus 34 ~A~iiG~iag~~~~~~~~~~~~~~iDD~ 61 (104)
...++|.++|.....=+.+.+|.|..||
T Consensus 10 ~~vI~agiag~af~gYciYFd~KRrsdP 37 (143)
T KOG4056|consen 10 TSVIAAGIAGLAFIGYCIYFDKKRRSDP 37 (143)
T ss_pred hHHHHHHHHHHHHHHHHhhcccccccCh
Confidence 4567778888877766677777778887
No 45
>COG3105 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.64 E-value=1.4e+02 Score=20.85 Aligned_cols=24 Identities=8% Similarity=0.014 Sum_probs=17.6
Q ss_pred CChHHHHHHHHHHHHH-HHHHHHHH
Q 048011 30 VEPWAAMVCLYFAPWV-LIGLNILA 53 (104)
Q Consensus 30 v~p~~A~iiG~iag~~-~~~~~~~~ 53 (104)
..+|.+..||.+.|++ -+...|+.
T Consensus 5 ~~~W~~a~igLvvGi~IG~li~Rlt 29 (138)
T COG3105 5 FMTWEYALIGLVVGIIIGALIARLT 29 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3589999999999986 45555554
No 46
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.59 E-value=1.7e+02 Score=18.25 Aligned_cols=19 Identities=11% Similarity=-0.045 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 048011 35 AMVCLYFAPWVLIGLNILAIK 55 (104)
Q Consensus 35 A~iiG~iag~~~~~~~~~~~~ 55 (104)
|++.|+++| ++.+.+..+|
T Consensus 13 ~ll~G~~~G--~fiark~~~k 31 (71)
T COG3763 13 ALLAGLIGG--FFIARKQMKK 31 (71)
T ss_pred HHHHHHHHH--HHHHHHHHHH
Confidence 455555555 5566666655
No 47
>PRK10132 hypothetical protein; Provisional
Probab=20.53 E-value=94 Score=20.68 Aligned_cols=15 Identities=13% Similarity=0.284 Sum_probs=12.0
Q ss_pred ChHHHHHHHHHHHHH
Q 048011 31 EPWAAMVCLYFAPWV 45 (104)
Q Consensus 31 ~p~~A~iiG~iag~~ 45 (104)
+||.++.|++..|++
T Consensus 85 ~Pw~svgiaagvG~l 99 (108)
T PRK10132 85 RPWCSVGTAAAVGIF 99 (108)
T ss_pred CcHHHHHHHHHHHHH
Confidence 699999887776665
No 48
>COG0575 CdsA CDP-diglyceride synthetase [Lipid metabolism]
Probab=20.49 E-value=2.1e+02 Score=21.47 Aligned_cols=39 Identities=13% Similarity=0.003 Sum_probs=30.0
Q ss_pred ChHHHHHHHHHHHHHHHHH----HHHHHHhcCCCCCccccccc
Q 048011 31 EPWAAMVCLYFAPWVLIGL----NILAIKLNFDDPLEGTRLHG 69 (104)
Q Consensus 31 ~p~~A~iiG~iag~~~~~~----~~~~~~~~iDD~vda~~vHg 69 (104)
+++..++++.+.+++.... +.+++++|+-|.=...|=||
T Consensus 199 ~~~~~~~l~~~~~l~~~lGDL~eS~iKR~~gvKDsg~liPGHG 241 (265)
T COG0575 199 NIWTLLILGLLLVLTSQLGDLFESYIKRLLGIKDSGWLIPGHG 241 (265)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHccCCCCcCCCCCCcC
Confidence 4577778888888776543 35667789999999999886
No 49
>MTH00021 ND6 NADH dehydrogenase subunit 6; Validated
Probab=20.10 E-value=1.3e+02 Score=21.61 Aligned_cols=27 Identities=15% Similarity=0.231 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 048011 73 FIGSQVTELSVIVGWVRETMGPLLVCF 99 (104)
Q Consensus 73 ~l~~Ql~g~~~i~~w~~~~s~~i~~~l 99 (104)
.++.|.+|++-+.+|+..++.++.+++
T Consensus 39 lLga~Fla~iqIlVYvGAI~VLflFvI 65 (188)
T MTH00021 39 LLGLDFLALMFLIIYVGAIAILFLFVI 65 (188)
T ss_pred HhccHHHHHHHHHHHHhHHHHHHHHHH
Confidence 788999999999999999998887775
Done!