Query 048011
Match_columns 104
No_of_seqs 166 out of 1055
Neff 6.5
Searched_HMMs 29240
Date Mon Mar 25 09:03:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048011.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/048011hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1u7g_A Probable ammonium trans 99.9 5.2E-28 1.8E-32 190.5 9.6 102 2-103 243-381 (385)
2 2b2h_A AMT-1, ammonium transpo 99.9 1.5E-27 5E-32 188.6 10.0 101 2-103 232-367 (399)
3 3b9w_A Ammonium transporter fa 99.9 2.8E-25 9.6E-30 175.9 10.5 100 2-101 220-346 (407)
4 3hd6_A Ammonium transporter RH 99.9 2.6E-24 8.8E-29 173.5 10.7 102 2-103 267-425 (490)
5 3hd6_A Ammonium transporter RH 31.2 57 0.0019 26.2 4.3 48 25-72 146-194 (490)
6 3cuq_A Vacuolar-sorting protei 22.1 73 0.0025 23.0 3.2 31 52-84 47-86 (234)
7 1u5t_A Appears to BE functiona 17.6 66 0.0023 23.2 2.1 30 52-83 67-104 (233)
8 1u7g_A Probable ammonium trans 14.1 2.1E+02 0.0071 22.0 4.2 44 29-72 122-172 (385)
9 2knc_B Integrin beta-3; transm 13.4 2.3E+02 0.0079 16.7 4.0 17 32-48 9-25 (79)
10 1kvd_A SMK toxin; halotolerant 12.6 70 0.0024 18.1 0.8 38 13-50 8-45 (63)
No 1
>1u7g_A Probable ammonium transporter; right handed helical bundle, transmembrane helices, ammonia membrane protein, RH protein, transport protein; HET: MSE BOG; 1.40A {Escherichia coli} SCOP: f.44.1.1 PDB: 1u77_A* 1u7c_A* 1xqf_A 1xqe_A 2ns1_A* 2nop_A 2nmr_A 3c1g_A 3c1i_A* 3c1h_A* 2now_A 2npe_A 2npc_A 2npd_A 2npg_A 2npj_A 2nuu_A* 3c1j_A 2npk_A
Probab=99.95 E-value=5.2e-28 Score=190.46 Aligned_cols=102 Identities=14% Similarity=-0.020 Sum_probs=97.3
Q ss_pred chhhHHHHHhcCcCchhhhhccc--------ccCCCCChHHHHHHHHHHHHHHHHHHH-HHHHhcCCCCCcccccccchh
Q 048011 2 ITRGLLENLRCLKWGAWRGCRNR--------IGLSVVEPWAAMVCLYFAPWVLIGLNI-LAIKLNFDDPLEGTRLHGGSG 72 (104)
Q Consensus 2 ~t~~~~~~~~~~k~~~~~~~nG~--------a~~~~v~p~~A~iiG~iag~~~~~~~~-~~~~~~iDD~vda~~vHg~~G 72 (104)
++|++++|+++||+|+.+++||+ |+|++++||+|++||+++|++|++..+ +++|+|||||+|++|+||+||
T Consensus 243 l~~~~~~~~~~gk~~~~~~~nG~lAGLVaITa~~~~v~p~~A~iiG~iag~i~~~~~~~l~~~l~iDD~l~a~~vHgv~G 322 (385)
T 1u7g_A 243 LGWIFGEWALRGLPSLLGACSGAIAGLVGVTPACGYIGVGGALIIGVVAGLAGLWGVTMLKRLLRVDDPCDVFGVHGVCG 322 (385)
T ss_dssp HHHHHHHHHHHSSCCHHHHHHHHHHHHHHHTTTTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHCSCCGGGHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHhhhhhccCCCCCCHHHHHHHHhHHHHHHHHHHHHHHHhCCCCCCCCCEeeccccc
Confidence 68999999999999999999999 999999999999999999999999998 567899999999999999999
Q ss_pred ----------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 048011 73 ----------------------------FIGSQVTELSVIVGWVRETMGPLLVCFMPFI 103 (104)
Q Consensus 73 ----------------------------~l~~Ql~g~~~i~~w~~~~s~~i~~~l~~~~ 103 (104)
|++.|++|++++.+|+++.++++++++|++.
T Consensus 323 i~G~l~~glfa~~~~~g~~~~~G~~~g~ql~~Ql~g~~~~~~~~~v~~~i~~~il~~~~ 381 (385)
T 1u7g_A 323 IVGCIMTGIFAASSLGGVGFAEGVTMGHQLLVQLESIAITIVWSGVVAFIGYKLADLTV 381 (385)
T ss_dssp HHHHHHHHHHTSGGGTCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhccccccCccccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 6789999999999999999999999999874
No 2
>2b2h_A AMT-1, ammonium transporter; membrane protein, transport protein; 1.54A {Archaeoglobus fulgidus} PDB: 2b2f_A 2b2i_A 2b2j_A
Probab=99.94 E-value=1.5e-27 Score=188.61 Aligned_cols=101 Identities=17% Similarity=0.080 Sum_probs=97.2
Q ss_pred chhhHHHHHhcCcCchhhhhccc--------ccCCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccccchh-
Q 048011 2 ITRGLLENLRCLKWGAWRGCRNR--------IGLSVVEPWAAMVCLYFAPWVLIGLNILAIKLNFDDPLEGTRLHGGSG- 72 (104)
Q Consensus 2 ~t~~~~~~~~~~k~~~~~~~nG~--------a~~~~v~p~~A~iiG~iag~~~~~~~~~~~~~~iDD~vda~~vHg~~G- 72 (104)
++|++++|++ ||+|+..++||+ |+|++++||+|++||+++|++|++..++++|+|||||+|++++||+||
T Consensus 232 l~~~~~~~~~-gk~~~~~~~nG~lAGLVaITa~~~~v~p~~A~iiG~iag~i~~~~~~l~~kl~iDD~l~a~~vHgv~Gi 310 (399)
T 2b2h_A 232 FVWMVIGWIK-GKPGSLGIVSGAIAGLAAITPAAGFVDVKGAIVIGLVAGIVCYLAMDFRIKKKIDESLDAWAIHGIGGL 310 (399)
T ss_dssp HHHHHHHHHH-SCCCHHHHHHHHHHHHHHHTTTTTTCCHHHHHHHHHHHHHHHHHHHHHHHHTTCCCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHH-cCCCHHHHHHHHHHhhhhhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCceeccchhhH
Confidence 6899999999 999999999999 999999999999999999999999999899999999999999999999
Q ss_pred --------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 048011 73 --------------------------FIGSQVTELSVIVGWVRETMGPLLVCFMPFI 103 (104)
Q Consensus 73 --------------------------~l~~Ql~g~~~i~~w~~~~s~~i~~~l~~~~ 103 (104)
|++.|++|++++.+|+++.++++++++|++.
T Consensus 311 ~G~l~~glfa~~~~~g~~Gl~~g~~~ql~~Ql~g~~~~~~~~~v~~~i~~~il~~~~ 367 (399)
T 2b2h_A 311 WGSVAVGILANPEVNGYAGLLFGNPQLLVSQLIAVASTTAYAFLVTLILAKAVDAAV 367 (399)
T ss_dssp HHHHHHHHHCCHHHHSCCCGGGTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHccccccCCCccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 6889999999999999999999999999864
No 3
>3b9w_A Ammonium transporter family; membrane protein, ammonia transport, rhesus protein, transpo protein; HET: BOG; 1.30A {Nitrosomonas europaea} PDB: 3bhs_A 3b9y_A* 3b9z_A*
Probab=99.92 E-value=2.8e-25 Score=175.92 Aligned_cols=100 Identities=16% Similarity=0.045 Sum_probs=92.0
Q ss_pred chhhHHHHH-hcCcCchhhhhccc--------ccCCCCChHHHHHHHHHHHHHHHHHHHH-----HHHhcCCCCCccccc
Q 048011 2 ITRGLLENL-RCLKWGAWRGCRNR--------IGLSVVEPWAAMVCLYFAPWVLIGLNIL-----AIKLNFDDPLEGTRL 67 (104)
Q Consensus 2 ~t~~~~~~~-~~~k~~~~~~~nG~--------a~~~~v~p~~A~iiG~iag~~~~~~~~~-----~~~~~iDD~vda~~v 67 (104)
++|++++++ ++||+|+..++||+ |+|++++||+|++||+++|++|++..+. ++|+|||||+|++++
T Consensus 220 l~~~~~~~~~~~gK~~~~~~~nG~LAGLVAITa~~~~v~p~~A~iIG~iaG~i~~~~~~~l~~~l~~~l~iDD~l~a~~v 299 (407)
T 3b9w_A 220 LATYFLSALFHKGKASIVDMANAALAGGVAIGSVCNIVGPVGAFVIGLLGGAISVVGFVFIQPMLESKAKTIDTCGVHNL 299 (407)
T ss_dssp HHHHHHHHHHTTTCCCHHHHHHHTTHHHHHHTTTTTTSCHHHHHHHHHHHHHHHHHHHHTHHHHHHHHSCCCCTTCHHHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHhhhhhhheeccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCeec
Confidence 689999998 89999999999999 9999999999999999999999988863 457899999999999
Q ss_pred ccchhHHH-------------HHHHHHHHHHHHHHHHHHHHHHHhhh
Q 048011 68 HGGSGFIG-------------SQVTELSVIVGWVRETMGPLLVCFMP 101 (104)
Q Consensus 68 Hg~~G~l~-------------~Ql~g~~~i~~w~~~~s~~i~~~l~~ 101 (104)
||+||.+| .|++|++++.+|+++.++++++++|+
T Consensus 300 Hgv~Gi~G~l~~glfa~~~~~~Ql~g~~~~~~~s~v~~~i~~~il~~ 346 (407)
T 3b9w_A 300 HGLPGLLGGFSAILIVPGIAVAQLTGIGITLALALIGGVIAGALIKL 346 (407)
T ss_dssp TTHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 99999221 59999999999999999999999997
No 4
>3hd6_A Ammonium transporter RH type C; ammonia, channel, rhesus, glycoprotein, membran structural genomics, PSI-2, protein structure initiative; HET: BOG; 2.10A {Homo sapiens}
Probab=99.91 E-value=2.6e-24 Score=173.52 Aligned_cols=102 Identities=14% Similarity=0.023 Sum_probs=93.2
Q ss_pred chhhHHHHH--hcCcCchhhhhccc--------ccCC-CCChHHHHHHHHHHHHHHHHHHH-----HHHHhcCCCCCccc
Q 048011 2 ITRGLLENL--RCLKWGAWRGCRNR--------IGLS-VVEPWAAMVCLYFAPWVLIGLNI-----LAIKLNFDDPLEGT 65 (104)
Q Consensus 2 ~t~~~~~~~--~~~k~~~~~~~nG~--------a~~~-~v~p~~A~iiG~iag~~~~~~~~-----~~~~~~iDD~vda~ 65 (104)
++|++++++ ++||+|+..++||+ |+|+ +++||+|++||+++|++|+++.+ +++|+|||||+|++
T Consensus 267 lt~~~~s~l~~~~gK~s~~~~~nG~LAGLVAIT~~a~~~v~P~~AliIG~iaG~i~~~~~~~l~~~l~~kl~iDD~lgv~ 346 (490)
T 3hd6_A 267 LTSVAISSALHKKGKLDMVHIQNATLAGGVAVGTAAEMMLMPYGALIIGFVCGIISTLGFVYLTPFLESRLHIQDTCGIN 346 (490)
T ss_dssp HHHHHHHHHTSTTCCCCHHHHHHGGGHHHHHTTTTTTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCTTCHH
T ss_pred HHHHHHHHHHHhcCCCCHHHhhhceeeeEEEEccCcccccCHHHHHHHHHHHHHHHHHHHHHhHHHHHHHCCCCccccch
Confidence 689999986 68999999999999 8998 69999999999999999998876 44789999999999
Q ss_pred ccccchh-----------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 048011 66 RLHGGSG-----------------------------------------FIGSQVTELSVIVGWVRETMGPLLVCFMPFI 103 (104)
Q Consensus 66 ~vHg~~G-----------------------------------------~l~~Ql~g~~~i~~w~~~~s~~i~~~l~~~~ 103 (104)
++||+|| |++.|++|++++.+|+++.++++++++|+..
T Consensus 347 ~vHGv~Gi~G~l~~glfa~~~~~~~~g~~Gl~~~f~~~~~~gg~~~~~ql~~Ql~gv~~~~~~a~v~~~ii~~iLk~~~ 425 (490)
T 3hd6_A 347 NLHGIPGIIGGIVGAVTAASASLEVYGKEGLVHSFDFQGFNGDWTARTQGKFQIYGLLVTLAMALMGGIIVGLILRLPF 425 (490)
T ss_dssp HHTHHHHHHHHHHHHHHHHC----------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTT
T ss_pred HHhhHHHHHHHHHHHHHhccccccccccCcceeccccccccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 9999998 2468999999999999999999999999863
No 5
>3hd6_A Ammonium transporter RH type C; ammonia, channel, rhesus, glycoprotein, membran structural genomics, PSI-2, protein structure initiative; HET: BOG; 2.10A {Homo sapiens}
Probab=31.16 E-value=57 Score=26.17 Aligned_cols=48 Identities=17% Similarity=0.152 Sum_probs=39.8
Q ss_pred ccCCCCChHHHHHHHHHHHHHHHHHHH-HHHHhcCCCCCcccccccchh
Q 048011 25 IGLSVVEPWAAMVCLYFAPWVLIGLNI-LAIKLNFDDPLEGTRLHGGSG 72 (104)
Q Consensus 25 a~~~~v~p~~A~iiG~iag~~~~~~~~-~~~~~~iDD~vda~~vHg~~G 72 (104)
|-+.-+++.+-++..++...+|....+ ++++++..|--+...||-++|
T Consensus 146 AvaeR~k~~~~li~~~l~~~vY~~~~w~~L~~lG~~DFAGs~vVH~~gG 194 (490)
T 3hd6_A 146 AVLGKVSPIQLLIMTFFQVTLFAVNEFILLNLLKVKDAGGSMTIHTFGA 194 (490)
T ss_dssp HHTTSSCHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCTTCTTTTHHHHH
T ss_pred HHHhcccHHHHHHHHHHHHHHHhhhHHHHHhccCceeecCceeeeHHHH
Confidence 667888899888888887777766554 367899999999999999999
No 6
>3cuq_A Vacuolar-sorting protein SNF8; ESCRT, MBV, VPS, nucleus, protein transport, transc transcription regulation, transport, endosome; 2.61A {Homo sapiens} PDB: 2zme_A
Probab=22.06 E-value=73 Score=23.03 Aligned_cols=31 Identities=26% Similarity=0.551 Sum_probs=22.0
Q ss_pred HHHHhcCCCCCcccc-----cccchh----HHHHHHHHHHHH
Q 048011 52 LAIKLNFDDPLEGTR-----LHGGSG----FIGSQVTELSVI 84 (104)
Q Consensus 52 ~~~~~~iDD~vda~~-----vHg~~G----~l~~Ql~g~~~i 84 (104)
+...++|| |+..-. ++|+ | +|++|++.+...
T Consensus 47 mc~siGVD-Plas~kg~ws~~lG~-gdfy~eLavqIvEvC~~ 86 (234)
T 3cuq_A 47 MCATIGVD-PLASGKGFWSEMLGV-GDFYYELGVQIIEVCLA 86 (234)
T ss_dssp HHHHHTCC-TTSCTTSHHHHHHCH-HHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCC-cccCCcchhhhhcCc-chHHHHHHHHHHHHHHH
Confidence 34568999 888543 7776 6 788998876543
No 7
>1u5t_A Appears to BE functionally related to SNF7; SNF8P; ESCRT, endosomal, trafficking, protein complex, transport protein; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54 PDB: 1w7p_A
Probab=17.60 E-value=66 Score=23.22 Aligned_cols=30 Identities=20% Similarity=0.215 Sum_probs=20.8
Q ss_pred HHHHhcCCCCCcccc----cccchh----HHHHHHHHHHH
Q 048011 52 LAIKLNFDDPLEGTR----LHGGSG----FIGSQVTELSV 83 (104)
Q Consensus 52 ~~~~~~iDD~vda~~----vHg~~G----~l~~Ql~g~~~ 83 (104)
+...++|| |+...+ ++|+ | +|++|++.+..
T Consensus 67 mc~siGVD-PLa~s~kg~~~lg~-gdfy~eLavqIvEvC~ 104 (233)
T 1u5t_A 67 MCSSIGID-PLSLFDRDKHLFTV-NDFYYEVCLKVIEICR 104 (233)
T ss_dssp HHHHHTCC-HHHHTTSSGGGTTH-HHHHHHHHHHHHHHHH
T ss_pred HHHHcCCC-CCccCCccccccCc-chHHHHHHHHHHHHHH
Confidence 44568999 988322 6675 6 78899887654
No 8
>1u7g_A Probable ammonium transporter; right handed helical bundle, transmembrane helices, ammonia membrane protein, RH protein, transport protein; HET: MSE BOG; 1.40A {Escherichia coli} SCOP: f.44.1.1 PDB: 1u77_A* 1u7c_A* 1xqf_A 1xqe_A 2ns1_A* 2nop_A 2nmr_A 3c1g_A 3c1i_A* 3c1h_A* 2now_A 2npe_A 2npc_A 2npd_A 2npg_A 2npj_A 2nuu_A* 3c1j_A 2npk_A
Probab=14.07 E-value=2.1e+02 Score=22.02 Aligned_cols=44 Identities=14% Similarity=0.043 Sum_probs=29.5
Q ss_pred CCChHHHHHHHHH-HHHHHHHHHHH------HHHhcCCCCCcccccccchh
Q 048011 29 VVEPWAAMVCLYF-APWVLIGLNIL------AIKLNFDDPLEGTRLHGGSG 72 (104)
Q Consensus 29 ~v~p~~A~iiG~i-ag~~~~~~~~~------~~~~~iDD~vda~~vHg~~G 72 (104)
-+++.+-++...+ ..++|....++ +.+++..|--+...||-.+|
T Consensus 122 R~kf~a~lif~~l~~~~vY~~~ahwvW~~GwL~~lG~~DFAGs~vVH~~gG 172 (385)
T 1u7g_A 122 RIRFPAVLIFVVVWLTLSYIPIAHMVWGGGLLASHGALDFAGGTVVHINAA 172 (385)
T ss_dssp GBCHHHHHHHHHHHHHHTHHHHHHHHHSSCHHHHHTCCCSSCTTTTHHHHH
T ss_pred cccHHHHHHHHHHHHHHHhhhhhheeEcchhhhhcceeeccCCeEEEecch
Confidence 3344443444443 45566544443 57899999999999999999
No 9
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=13.38 E-value=2.3e+02 Score=16.74 Aligned_cols=17 Identities=18% Similarity=0.239 Sum_probs=11.3
Q ss_pred hHHHHHHHHHHHHHHHH
Q 048011 32 PWAAMVCLYFAPWVLIG 48 (104)
Q Consensus 32 p~~A~iiG~iag~~~~~ 48 (104)
+..+++.|.++|++...
T Consensus 9 n~~~Iv~gvi~gilliG 25 (79)
T 2knc_B 9 DILVVLLSVMGAILLIG 25 (79)
T ss_dssp CSHHHHHHHHHHHHHHH
T ss_pred CchhhHHHHHHHHHHHH
Confidence 45667788888766443
No 10
>1kvd_A SMK toxin; halotolerant yeast; 1.80A {Pichia farinosa} SCOP: d.70.1.2 PDB: 1kve_A
Probab=12.60 E-value=70 Score=18.07 Aligned_cols=38 Identities=16% Similarity=-0.016 Sum_probs=24.1
Q ss_pred CcCchhhhhcccccCCCCChHHHHHHHHHHHHHHHHHH
Q 048011 13 LKWGAWRGCRNRIGLSVVEPWAAMVCLYFAPWVLIGLN 50 (104)
Q Consensus 13 ~k~~~~~~~nG~a~~~~v~p~~A~iiG~iag~~~~~~~ 50 (104)
.|-+....+.|..|++.+.-.+.=++|.+++-+.....
T Consensus 8 qksttiaaiagcsgaatfgglaggivgciaagilailq 45 (63)
T 1kvd_A 8 QKSTTIAAIAGCSGAATFGGLAGGIVGCIAAGILAILQ 45 (63)
T ss_dssp EEECCCCCBCCCSSCCCCTTCCSHHHHHHHHHHHHHHH
T ss_pred ccceehHHHhCCccchhcccccchHHHHHHHHHHHHHh
Confidence 34555666667767777776666777877765544333
Done!