RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 048011
(104 letters)
>d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia
coli [TaxId: 562]}
Length = 357
Score = 25.2 bits (54), Expect = 1.7
Identities = 5/13 (38%), Positives = 7/13 (53%)
Query: 69 GGSGFIGSQVTEL 81
G +G GS + E
Sbjct: 8 GVTGQDGSYLAEF 20
>d1oc2a_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB)
{Streptococcus suis, serotype 2 [TaxId: 1307]}
Length = 346
Score = 24.9 bits (53), Expect = 2.0
Identities = 7/13 (53%), Positives = 8/13 (61%)
Query: 69 GGSGFIGSQVTEL 81
GG+GFIGS
Sbjct: 9 GGAGFIGSNFVHY 21
>d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces
salmonicolor [TaxId: 5005]}
Length = 342
Score = 25.2 bits (53), Expect = 2.1
Identities = 6/12 (50%), Positives = 8/12 (66%)
Query: 69 GGSGFIGSQVTE 80
G +GF+ S V E
Sbjct: 18 GANGFVASHVVE 29
>d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 347
Score = 24.9 bits (53), Expect = 2.1
Identities = 5/13 (38%), Positives = 7/13 (53%)
Query: 69 GGSGFIGSQVTEL 81
G +G GS + E
Sbjct: 8 GITGQDGSYLAEF 20
>d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale
cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 363
Score = 24.9 bits (53), Expect = 2.3
Identities = 5/12 (41%), Positives = 6/12 (50%)
Query: 69 GGSGFIGSQVTE 80
G GFI S +
Sbjct: 22 GAGGFIASHIAR 33
>d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 312
Score = 25.0 bits (54), Expect = 2.3
Identities = 7/13 (53%), Positives = 11/13 (84%)
Query: 69 GGSGFIGSQVTEL 81
GG+GF+GS +T+
Sbjct: 8 GGAGFVGSHLTDK 20
>d1n7ha_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 339
Score = 25.0 bits (53), Expect = 2.3
Identities = 6/13 (46%), Positives = 8/13 (61%)
Query: 69 GGSGFIGSQVTEL 81
G +G GS +TE
Sbjct: 8 GITGQDGSYLTEF 20
>d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP
{Pseudomonas aeruginosa [TaxId: 287]}
Length = 341
Score = 24.9 bits (53), Expect = 2.5
Identities = 7/12 (58%), Positives = 9/12 (75%)
Query: 69 GGSGFIGSQVTE 80
G +GFIGS + E
Sbjct: 23 GVAGFIGSNLLE 34
>d1kewa_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB)
{Streptococcus suis, serotype 2 [TaxId: 1307]}
Length = 361
Score = 24.7 bits (53), Expect = 2.7
Identities = 8/13 (61%), Positives = 9/13 (69%)
Query: 69 GGSGFIGSQVTEL 81
GG+GFIGS V
Sbjct: 7 GGAGFIGSAVVRH 19
>d1e6ua_ c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose
epimerase/reductase (GDP-fucose synthetase)
{Escherichia coli [TaxId: 562]}
Length = 315
Score = 24.8 bits (53), Expect = 2.7
Identities = 4/12 (33%), Positives = 6/12 (50%)
Query: 69 GGSGFIGSQVTE 80
G G +GS +
Sbjct: 9 GHRGMVGSAIRR 20
>d1xsfa1 d.2.1.8 (A:23-108) Probable resuscitation-promoting
factor RpfB {Mycobacterium tuberculosis [TaxId: 1773]}
Length = 86
Score = 23.6 bits (51), Expect = 3.2
Identities = 7/13 (53%), Positives = 7/13 (53%)
Query: 15 WGAWRGCRNRIGL 27
WGAW C R G
Sbjct: 73 WGAWPVCAARAGA 85
>d1r6da_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB)
{Streptomyces venezuelae [TaxId: 54571]}
Length = 322
Score = 24.4 bits (52), Expect = 3.8
Identities = 7/12 (58%), Positives = 8/12 (66%)
Query: 69 GGSGFIGSQVTE 80
GG+GFIGS
Sbjct: 7 GGAGFIGSHFVR 18
>d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase
(UDP-galactose 4-epimerase) {Escherichia coli [TaxId:
562]}
Length = 338
Score = 24.2 bits (51), Expect = 3.9
Identities = 7/12 (58%), Positives = 8/12 (66%)
Query: 69 GGSGFIGSQVTE 80
GGSG+IGS
Sbjct: 7 GGSGYIGSHTCV 18
>d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi
[TaxId: 90370]}
Length = 338
Score = 24.3 bits (51), Expect = 4.0
Identities = 6/13 (46%), Positives = 8/13 (61%)
Query: 69 GGSGFIGSQVTEL 81
GG GF+GS +
Sbjct: 7 GGCGFLGSNLASF 19
>d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas
aeruginosa [TaxId: 287]}
Length = 321
Score = 24.2 bits (51), Expect = 4.2
Identities = 4/13 (30%), Positives = 8/13 (61%)
Query: 69 GGSGFIGSQVTEL 81
G +G G+ + +L
Sbjct: 7 GITGQDGAYLAKL 19
>d1z45a2 c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-epimerase
(UDP-galactose 4-epimerase) {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 347
Score = 24.2 bits (51), Expect = 4.3
Identities = 6/12 (50%), Positives = 8/12 (66%)
Query: 69 GGSGFIGSQVTE 80
GG+G+IGS
Sbjct: 8 GGAGYIGSHTVV 19
>d1gy8a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase
(UDP-galactose 4-epimerase) {Trypanosoma brucei [TaxId:
5691]}
Length = 383
Score = 24.0 bits (50), Expect = 4.3
Identities = 6/12 (50%), Positives = 8/12 (66%)
Query: 69 GGSGFIGSQVTE 80
GG+G+IGS
Sbjct: 9 GGAGYIGSHFVR 20
>d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant
arborvitae (Thuja plicata) [TaxId: 3316]}
Length = 312
Score = 24.0 bits (50), Expect = 4.4
Identities = 5/12 (41%), Positives = 9/12 (75%)
Query: 69 GGSGFIGSQVTE 80
GG+G+IG ++
Sbjct: 10 GGTGYIGKRIVN 21
>d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase
(UDP-galactose 4-epimerase) {Human (Homo sapiens)
[TaxId: 9606]}
Length = 346
Score = 23.9 bits (50), Expect = 4.9
Identities = 6/12 (50%), Positives = 8/12 (66%)
Query: 69 GGSGFIGSQVTE 80
GG+G+IGS
Sbjct: 9 GGAGYIGSHTVL 20
>d1u7ga_ f.44.1.1 (A:) Ammonium transporter AmtB {Escherichia coli
[TaxId: 562]}
Length = 383
Score = 23.9 bits (51), Expect = 5.7
Identities = 14/55 (25%), Positives = 23/55 (41%), Gaps = 1/55 (1%)
Query: 26 GLSVVEPWAAMVCLYFA-PWVLIGLNILAIKLNFDDPLEGTRLHGGSGFIGSQVT 79
+ A++ A L G+ +L L DDP + +HG G +G +T
Sbjct: 273 ACGYIGVGGALIIGVVAGLAGLWGVTMLKRLLRVDDPCDVFGVHGVCGIVGCIMT 327
>d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia
pseudotuberculosis [TaxId: 633]}
Length = 356
Score = 23.7 bits (49), Expect = 6.0
Identities = 4/13 (30%), Positives = 7/13 (53%)
Query: 69 GGSGFIGSQVTEL 81
G +GF G ++
Sbjct: 15 GHTGFKGGWLSLW 27
>d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase
{Loblolly pine (Pinus taeda) [TaxId: 3352]}
Length = 307
Score = 23.6 bits (49), Expect = 6.1
Identities = 5/12 (41%), Positives = 8/12 (66%)
Query: 69 GGSGFIGSQVTE 80
G +G+IG V +
Sbjct: 10 GATGYIGRHVAK 21
>d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA
(PrmI) {Escherichia coli [TaxId: 562]}
Length = 342
Score = 23.4 bits (48), Expect = 7.5
Identities = 7/12 (58%), Positives = 10/12 (83%)
Query: 69 GGSGFIGSQVTE 80
G +GFIG+ +TE
Sbjct: 7 GVNGFIGNHLTE 18
>d2uubm1 a.156.1.1 (M:2-126) Ribosomal protein S13 {Thermus
thermophilus [TaxId: 274]}
Length = 125
Score = 22.9 bits (49), Expect = 7.8
Identities = 8/14 (57%), Positives = 10/14 (71%)
Query: 16 GAWRGCRNRIGLSV 29
G +RG R+R GL V
Sbjct: 84 GCYRGLRHRRGLPV 97
>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 205
Score = 23.1 bits (48), Expect = 8.8
Identities = 3/12 (25%), Positives = 4/12 (33%)
Query: 69 GGSGFIGSQVTE 80
G +G G
Sbjct: 10 GATGQTGLTTLA 21
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.329 0.146 0.502
Gapped
Lambda K H
0.267 0.0629 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 411,088
Number of extensions: 16432
Number of successful extensions: 60
Number of sequences better than 10.0: 1
Number of HSP's gapped: 60
Number of HSP's successfully gapped: 36
Length of query: 104
Length of database: 2,407,596
Length adjustment: 65
Effective length of query: 39
Effective length of database: 1,515,146
Effective search space: 59090694
Effective search space used: 59090694
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 47 (22.1 bits)