BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048012
(616 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 72.8 bits (177), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 84/329 (25%), Positives = 143/329 (43%), Gaps = 57/329 (17%)
Query: 142 EIVLKGHTKIVSALAVDHSGSRVLSGSYDYTVRMYD-FQGMNSRLQSFRQLEPSEGHQVR 200
+ L GHTK VS++ +G + S S D ++++ + G + S +L +
Sbjct: 38 KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKL------GIS 91
Query: 201 NLSWSPTSDRFLCVTGSAQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHP 260
+++WS S+ + + KI+D ++ G + LK KGH + C ++P
Sbjct: 92 DVAWSSDSNLLVSASDDKTLKIWD---VSSG---------KCLKTLKGHSNYVFCCNFNP 139
Query: 261 KTKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWDCDGKCIAGGIGD 320
++ I++ S D S+RIWDV K K + P + P V+ ++ DG I D
Sbjct: 140 QS-NLIVSGSFDESVRIWDVKTGKCLKTL--PAHSDP----VSAVHFNRDGSLIVSSSYD 192
Query: 321 GSIQVWNLKPGWGSRPDIHVEKGHSDD----ITALKFSSDGRILLSRSFDGSLKVWDLRK 376
G ++W+ G K DD ++ +KFS +G+ +L+ + D +LK+WD K
Sbjct: 193 GLCRIWDTASG-------QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK 245
Query: 377 MKEPLKVFEDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREKLELVSR-- 434
K LK + N FS +TG + L+ ++ + E+V +
Sbjct: 246 GK-CLKTYTGHKNEKYCIFANFS------VTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ 298
Query: 435 ----VGISPACSVVQCAWHPKLNQIFATA 459
V IS AC HP N I + A
Sbjct: 299 GHTDVVISTAC-------HPTENIIASAA 320
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 72.4 bits (176), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 84/329 (25%), Positives = 143/329 (43%), Gaps = 57/329 (17%)
Query: 142 EIVLKGHTKIVSALAVDHSGSRVLSGSYDYTVRMYD-FQGMNSRLQSFRQLEPSEGHQVR 200
+ L GHTK VS++ +G + S S D ++++ + G + S +L +
Sbjct: 40 KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKL------GIS 93
Query: 201 NLSWSPTSDRFLCVTGSAQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHP 260
+++WS S+ + + KI+D ++ G + LK KGH + C ++P
Sbjct: 94 DVAWSSDSNLLVSASDDKTLKIWD---VSSG---------KCLKTLKGHSNYVFCCNFNP 141
Query: 261 KTKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWDCDGKCIAGGIGD 320
++ I++ S D S+RIWDV K K + P + P V+ ++ DG I D
Sbjct: 142 QS-NLIVSGSFDESVRIWDVKTGKCLKTL--PAHSDP----VSAVHFNRDGSLIVSSSYD 194
Query: 321 GSIQVWNLKPGWGSRPDIHVEKGHSDD----ITALKFSSDGRILLSRSFDGSLKVWDLRK 376
G ++W+ G K DD ++ +KFS +G+ +L+ + D +LK+WD K
Sbjct: 195 GLCRIWDTASG-------QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK 247
Query: 377 MKEPLKVFEDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREKLELVSR-- 434
K LK + N FS +TG + L+ ++ + E+V +
Sbjct: 248 GK-CLKTYTGHKNEKYCIFANFS------VTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ 300
Query: 435 ----VGISPACSVVQCAWHPKLNQIFATA 459
V IS AC HP N I + A
Sbjct: 301 GHTDVVISTAC-------HPTENIIASAA 322
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 84/329 (25%), Positives = 143/329 (43%), Gaps = 57/329 (17%)
Query: 142 EIVLKGHTKIVSALAVDHSGSRVLSGSYDYTVRMYD-FQGMNSRLQSFRQLEPSEGHQVR 200
+ L GHTK VS++ +G + S S D ++++ + G + S +L +
Sbjct: 22 KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKL------GIS 75
Query: 201 NLSWSPTSDRFLCVTGSAQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHP 260
+++WS S+ + + KI+D ++ G + LK KGH + C ++P
Sbjct: 76 DVAWSSDSNLLVSASDDKTLKIWD---VSSG---------KCLKTLKGHSNYVFCCNFNP 123
Query: 261 KTKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWDCDGKCIAGGIGD 320
++ I++ S D S+RIWDV K K + P + P V+ ++ DG I D
Sbjct: 124 QS-NLIVSGSFDESVRIWDVKTGKCLKTL--PAHSDP----VSAVHFNRDGSLIVSSSYD 176
Query: 321 GSIQVWNLKPGWGSRPDIHVEKGHSDD----ITALKFSSDGRILLSRSFDGSLKVWDLRK 376
G ++W+ G K DD ++ +KFS +G+ +L+ + D +LK+WD K
Sbjct: 177 GLCRIWDTASG-------QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK 229
Query: 377 MKEPLKVFEDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREKLELVSR-- 434
K LK + N FS +TG + L+ ++ + E+V +
Sbjct: 230 GK-CLKTYTGHKNEKYCIFANFS------VTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ 282
Query: 435 ----VGISPACSVVQCAWHPKLNQIFATA 459
V IS AC HP N I + A
Sbjct: 283 GHTDVVISTAC-------HPTENIIASAA 304
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 84/329 (25%), Positives = 143/329 (43%), Gaps = 57/329 (17%)
Query: 142 EIVLKGHTKIVSALAVDHSGSRVLSGSYDYTVRMYD-FQGMNSRLQSFRQLEPSEGHQVR 200
+ L GHTK VS++ +G + S S D ++++ + G + S +L +
Sbjct: 22 KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKL------GIS 75
Query: 201 NLSWSPTSDRFLCVTGSAQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHP 260
+++WS S+ + + KI+D ++ G + LK KGH + C ++P
Sbjct: 76 DVAWSSDSNLLVSASDDKTLKIWD---VSSG---------KCLKTLKGHSNYVFCCNFNP 123
Query: 261 KTKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWDCDGKCIAGGIGD 320
++ I++ S D S+RIWDV K K + P + P V+ ++ DG I D
Sbjct: 124 QS-NLIVSGSFDESVRIWDVKTGKCLKTL--PAHSDP----VSAVHFNRDGSLIVSSSYD 176
Query: 321 GSIQVWNLKPGWGSRPDIHVEKGHSDD----ITALKFSSDGRILLSRSFDGSLKVWDLRK 376
G ++W+ G K DD ++ +KFS +G+ +L+ + D +LK+WD K
Sbjct: 177 GLCRIWDTASG-------QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK 229
Query: 377 MKEPLKVFEDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREKLELVSR-- 434
K LK + N FS +TG + L+ ++ + E+V +
Sbjct: 230 GK-CLKTYTGHKNEKYCIFANFS------VTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ 282
Query: 435 ----VGISPACSVVQCAWHPKLNQIFATA 459
V IS AC HP N I + A
Sbjct: 283 GHTDVVISTAC-------HPTENIIASAA 304
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 84/329 (25%), Positives = 143/329 (43%), Gaps = 57/329 (17%)
Query: 142 EIVLKGHTKIVSALAVDHSGSRVLSGSYDYTVRMYD-FQGMNSRLQSFRQLEPSEGHQVR 200
+ L GHTK VS++ +G + S S D ++++ + G + S +L +
Sbjct: 22 KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKL------GIS 75
Query: 201 NLSWSPTSDRFLCVTGSAQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHP 260
+++WS S+ + + KI+D ++ G + LK KGH + C ++P
Sbjct: 76 DVAWSSDSNLLVSASDDKTLKIWD---VSSG---------KCLKTLKGHSNYVFCCNFNP 123
Query: 261 KTKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWDCDGKCIAGGIGD 320
++ I++ S D S+RIWDV K K + P + P V+ ++ DG I D
Sbjct: 124 QS-NLIVSGSFDESVRIWDVKTGKCLKTL--PAHSDP----VSAVHFNRDGSLIVSSSYD 176
Query: 321 GSIQVWNLKPGWGSRPDIHVEKGHSDD----ITALKFSSDGRILLSRSFDGSLKVWDLRK 376
G ++W+ G K DD ++ +KFS +G+ +L+ + D +LK+WD K
Sbjct: 177 GLCRIWDTASG-------QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK 229
Query: 377 MKEPLKVFEDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREKLELVSR-- 434
K LK + N FS +TG + L+ ++ + E+V +
Sbjct: 230 GK-CLKTYTGHKNEKYCIFANFS------VTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ 282
Query: 435 ----VGISPACSVVQCAWHPKLNQIFATA 459
V IS AC HP N I + A
Sbjct: 283 GHTDVVISTAC-------HPTENIIASAA 304
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 84/329 (25%), Positives = 143/329 (43%), Gaps = 57/329 (17%)
Query: 142 EIVLKGHTKIVSALAVDHSGSRVLSGSYDYTVRMYD-FQGMNSRLQSFRQLEPSEGHQVR 200
+ L GHTK VS++ +G + S S D ++++ + G + S +L +
Sbjct: 16 KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKL------GIS 69
Query: 201 NLSWSPTSDRFLCVTGSAQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHP 260
+++WS S+ + + KI+D ++ G + LK KGH + C ++P
Sbjct: 70 DVAWSSDSNLLVSASDDKTLKIWD---VSSG---------KCLKTLKGHSNYVFCCNFNP 117
Query: 261 KTKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWDCDGKCIAGGIGD 320
++ I++ S D S+RIWDV K K + P + P V+ ++ DG I D
Sbjct: 118 QS-NLIVSGSFDESVRIWDVKTGKCLKTL--PAHSDP----VSAVHFNRDGSLIVSSSYD 170
Query: 321 GSIQVWNLKPGWGSRPDIHVEKGHSDD----ITALKFSSDGRILLSRSFDGSLKVWDLRK 376
G ++W+ G K DD ++ +KFS +G+ +L+ + D +LK+WD K
Sbjct: 171 GLCRIWDTASG-------QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK 223
Query: 377 MKEPLKVFEDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREKLELVSR-- 434
K LK + N FS +TG + L+ ++ + E+V +
Sbjct: 224 GK-CLKTYTGHKNEKYCIFANFS------VTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ 276
Query: 435 ----VGISPACSVVQCAWHPKLNQIFATA 459
V IS AC HP N I + A
Sbjct: 277 GHTDVVISTAC-------HPTENIIASAA 298
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 84/329 (25%), Positives = 143/329 (43%), Gaps = 57/329 (17%)
Query: 142 EIVLKGHTKIVSALAVDHSGSRVLSGSYDYTVRMYD-FQGMNSRLQSFRQLEPSEGHQVR 200
+ L GHTK VS++ +G + S S D ++++ + G + S +L +
Sbjct: 33 KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKL------GIS 86
Query: 201 NLSWSPTSDRFLCVTGSAQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHP 260
+++WS S+ + + KI+D ++ G + LK KGH + C ++P
Sbjct: 87 DVAWSSDSNLLVSASDDKTLKIWD---VSSG---------KCLKTLKGHSNYVFCCNFNP 134
Query: 261 KTKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWDCDGKCIAGGIGD 320
++ I++ S D S+RIWDV K K + P + P V+ ++ DG I D
Sbjct: 135 QS-NLIVSGSFDESVRIWDVKTGKCLKTL--PAHSDP----VSAVHFNRDGSLIVSSSYD 187
Query: 321 GSIQVWNLKPGWGSRPDIHVEKGHSDD----ITALKFSSDGRILLSRSFDGSLKVWDLRK 376
G ++W+ G K DD ++ +KFS +G+ +L+ + D +LK+WD K
Sbjct: 188 GLCRIWDTASG-------QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK 240
Query: 377 MKEPLKVFEDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREKLELVSR-- 434
K LK + N FS +TG + L+ ++ + E+V +
Sbjct: 241 GK-CLKTYTGHKNEKYCIFANFS------VTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ 293
Query: 435 ----VGISPACSVVQCAWHPKLNQIFATA 459
V IS AC HP N I + A
Sbjct: 294 GHTDVVISTAC-------HPTENIIASAA 315
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 84/329 (25%), Positives = 143/329 (43%), Gaps = 57/329 (17%)
Query: 142 EIVLKGHTKIVSALAVDHSGSRVLSGSYDYTVRMYD-FQGMNSRLQSFRQLEPSEGHQVR 200
+ L GHTK VS++ +G + S S D ++++ + G + S +L +
Sbjct: 21 KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKL------GIS 74
Query: 201 NLSWSPTSDRFLCVTGSAQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHP 260
+++WS S+ + + KI+D ++ G + LK KGH + C ++P
Sbjct: 75 DVAWSSDSNLLVSASDDKTLKIWD---VSSG---------KCLKTLKGHSNYVFCCNFNP 122
Query: 261 KTKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWDCDGKCIAGGIGD 320
++ I++ S D S+RIWDV K K + P + P V+ ++ DG I D
Sbjct: 123 QS-NLIVSGSFDESVRIWDVKTGKCLKTL--PAHSDP----VSAVHFNRDGSLIVSSSYD 175
Query: 321 GSIQVWNLKPGWGSRPDIHVEKGHSDD----ITALKFSSDGRILLSRSFDGSLKVWDLRK 376
G ++W+ G K DD ++ +KFS +G+ +L+ + D +LK+WD K
Sbjct: 176 GLCRIWDTASG-------QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK 228
Query: 377 MKEPLKVFEDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREKLELVSR-- 434
K LK + N FS +TG + L+ ++ + E+V +
Sbjct: 229 GK-CLKTYTGHKNEKYCIFANFS------VTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ 281
Query: 435 ----VGISPACSVVQCAWHPKLNQIFATA 459
V IS AC HP N I + A
Sbjct: 282 GHTDVVISTAC-------HPTENIIASAA 303
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 84/329 (25%), Positives = 143/329 (43%), Gaps = 57/329 (17%)
Query: 142 EIVLKGHTKIVSALAVDHSGSRVLSGSYDYTVRMYD-FQGMNSRLQSFRQLEPSEGHQVR 200
+ L GHTK VS++ +G + S S D ++++ + G + S +L +
Sbjct: 16 KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKL------GIS 69
Query: 201 NLSWSPTSDRFLCVTGSAQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHP 260
+++WS S+ + + KI+D ++ G + LK KGH + C ++P
Sbjct: 70 DVAWSSDSNLLVSASDDKTLKIWD---VSSG---------KCLKTLKGHSNYVFCCNFNP 117
Query: 261 KTKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWDCDGKCIAGGIGD 320
++ I++ S D S+RIWDV K K + P + P V+ ++ DG I D
Sbjct: 118 QS-NLIVSGSFDESVRIWDVKTGKCLKTL--PAHSDP----VSAVHFNRDGSLIVSSSYD 170
Query: 321 GSIQVWNLKPGWGSRPDIHVEKGHSDD----ITALKFSSDGRILLSRSFDGSLKVWDLRK 376
G ++W+ G K DD ++ +KFS +G+ +L+ + D +LK+WD K
Sbjct: 171 GLCRIWDTASG-------QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK 223
Query: 377 MKEPLKVFEDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREKLELVSR-- 434
K LK + N FS +TG + L+ ++ + E+V +
Sbjct: 224 GK-CLKTYTGHKNEKYCIFANFS------VTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ 276
Query: 435 ----VGISPACSVVQCAWHPKLNQIFATA 459
V IS AC HP N I + A
Sbjct: 277 GHTDVVISTAC-------HPTENIIASAA 298
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 84/329 (25%), Positives = 143/329 (43%), Gaps = 57/329 (17%)
Query: 142 EIVLKGHTKIVSALAVDHSGSRVLSGSYDYTVRMYD-FQGMNSRLQSFRQLEPSEGHQVR 200
+ L GHTK VS++ +G + S S D ++++ + G + S +L +
Sbjct: 15 KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKL------GIS 68
Query: 201 NLSWSPTSDRFLCVTGSAQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHP 260
+++WS S+ + + KI+D ++ G + LK KGH + C ++P
Sbjct: 69 DVAWSSDSNLLVSASDDKTLKIWD---VSSG---------KCLKTLKGHSNYVFCCNFNP 116
Query: 261 KTKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWDCDGKCIAGGIGD 320
++ I++ S D S+RIWDV K K + P + P V+ ++ DG I D
Sbjct: 117 QS-NLIVSGSFDESVRIWDVKTGKCLKTL--PAHSDP----VSAVHFNRDGSLIVSSSYD 169
Query: 321 GSIQVWNLKPGWGSRPDIHVEKGHSDD----ITALKFSSDGRILLSRSFDGSLKVWDLRK 376
G ++W+ G K DD ++ +KFS +G+ +L+ + D +LK+WD K
Sbjct: 170 GLCRIWDTASG-------QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK 222
Query: 377 MKEPLKVFEDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREKLELVSR-- 434
K LK + N FS +TG + L+ ++ + E+V +
Sbjct: 223 GK-CLKTYTGHKNEKYCIFANFS------VTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ 275
Query: 435 ----VGISPACSVVQCAWHPKLNQIFATA 459
V IS AC HP N I + A
Sbjct: 276 GHTDVVISTAC-------HPTENIIASAA 297
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 84/329 (25%), Positives = 143/329 (43%), Gaps = 57/329 (17%)
Query: 142 EIVLKGHTKIVSALAVDHSGSRVLSGSYDYTVRMYD-FQGMNSRLQSFRQLEPSEGHQVR 200
+ L GHTK VS++ +G + S S D ++++ + G + S +L +
Sbjct: 12 KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKL------GIS 65
Query: 201 NLSWSPTSDRFLCVTGSAQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHP 260
+++WS S+ + + KI+D ++ G + LK KGH + C ++P
Sbjct: 66 DVAWSSDSNLLVSASDDKTLKIWD---VSSG---------KCLKTLKGHSNYVFCCNFNP 113
Query: 261 KTKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWDCDGKCIAGGIGD 320
++ I++ S D S+RIWDV K K + P + P V+ ++ DG I D
Sbjct: 114 QS-NLIVSGSFDESVRIWDVKTGKCLKTL--PAHSDP----VSAVHFNRDGSLIVSSSYD 166
Query: 321 GSIQVWNLKPGWGSRPDIHVEKGHSDD----ITALKFSSDGRILLSRSFDGSLKVWDLRK 376
G ++W+ G K DD ++ +KFS +G+ +L+ + D +LK+WD K
Sbjct: 167 GLCRIWDTASG-------QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK 219
Query: 377 MKEPLKVFEDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREKLELVSR-- 434
K LK + N FS +TG + L+ ++ + E+V +
Sbjct: 220 GK-CLKTYTGHKNEKYCIFANFS------VTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ 272
Query: 435 ----VGISPACSVVQCAWHPKLNQIFATA 459
V IS AC HP N I + A
Sbjct: 273 GHTDVVISTAC-------HPTENIIASAA 294
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 84/329 (25%), Positives = 143/329 (43%), Gaps = 57/329 (17%)
Query: 142 EIVLKGHTKIVSALAVDHSGSRVLSGSYDYTVRMYD-FQGMNSRLQSFRQLEPSEGHQVR 200
+ L GHTK VS++ +G + S S D ++++ + G + S +L +
Sbjct: 17 KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKL------GIS 70
Query: 201 NLSWSPTSDRFLCVTGSAQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHP 260
+++WS S+ + + KI+D ++ G + LK KGH + C ++P
Sbjct: 71 DVAWSSDSNLLVSASDDKTLKIWD---VSSG---------KCLKTLKGHSNYVFCCNFNP 118
Query: 261 KTKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWDCDGKCIAGGIGD 320
++ I++ S D S+RIWDV K K + P + P V+ ++ DG I D
Sbjct: 119 QS-NLIVSGSFDESVRIWDVKTGKCLKTL--PAHSDP----VSAVHFNRDGSLIVSSSYD 171
Query: 321 GSIQVWNLKPGWGSRPDIHVEKGHSDD----ITALKFSSDGRILLSRSFDGSLKVWDLRK 376
G ++W+ G K DD ++ +KFS +G+ +L+ + D +LK+WD K
Sbjct: 172 GLCRIWDTASG-------QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK 224
Query: 377 MKEPLKVFEDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREKLELVSR-- 434
K LK + N FS +TG + L+ ++ + E+V +
Sbjct: 225 GK-CLKTYTGHKNEKYCIFANFS------VTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ 277
Query: 435 ----VGISPACSVVQCAWHPKLNQIFATA 459
V IS AC HP N I + A
Sbjct: 278 GHTDVVISTAC-------HPTENIIASAA 299
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 70.1 bits (170), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 84/328 (25%), Positives = 144/328 (43%), Gaps = 55/328 (16%)
Query: 142 EIVLKGHTKIVSALAVDHSGSRVLSGSYDYTVRMYD-FQGMNSRLQSFRQLEPSEGHQVR 200
+ L GHTK VS++ +G + S S D ++++ + G + S +L +
Sbjct: 19 KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKL------GIS 72
Query: 201 NLSWSPTSDRFLCVTGSAQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHP 260
+++WS S+ + + KI+D ++ G + LK KGH + C ++P
Sbjct: 73 DVAWSSDSNLLVSASDDKTLKIWD---VSSG---------KCLKTLKGHSNYVFCCNFNP 120
Query: 261 KTKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWDCDGKCIAGGIGD 320
++ I++ S D S+RIWDV K K + P + P V+ ++ DG I D
Sbjct: 121 QS-NLIVSGSFDESVRIWDVKTGKCLKTL--PAHSDP----VSAVHFNRDGSLIVSSSYD 173
Query: 321 GSIQVWNLKPGWGSRPDIHVEKGHSDD---ITALKFSSDGRILLSRSFDGSLKVWDLRKM 377
G ++W+ G + I DD ++ +KFS +G+ +L+ + D +LK+WD K
Sbjct: 174 GLCRIWDTASGQCLKTLI------DDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKG 227
Query: 378 KEPLKVFEDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREKLELVSR--- 434
K LK + N FS +TG + L+ ++ + E+V +
Sbjct: 228 K-CLKTYTGHKNEKYCIFANFS------VTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQG 280
Query: 435 ---VGISPACSVVQCAWHPKLNQIFATA 459
V IS AC HP N I + A
Sbjct: 281 HTDVVISTAC-------HPTENIIASAA 301
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 70.1 bits (170), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 84/328 (25%), Positives = 144/328 (43%), Gaps = 55/328 (16%)
Query: 142 EIVLKGHTKIVSALAVDHSGSRVLSGSYDYTVRMYD-FQGMNSRLQSFRQLEPSEGHQVR 200
+ L GHTK VS++ +G + S S D ++++ + G + S +L +
Sbjct: 19 KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKL------GIS 72
Query: 201 NLSWSPTSDRFLCVTGSAQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHP 260
+++WS S+ + + KI+D ++ G + LK KGH + C ++P
Sbjct: 73 DVAWSSDSNLLVSASDDKTLKIWD---VSSG---------KCLKTLKGHSNYVFCCNFNP 120
Query: 261 KTKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWDCDGKCIAGGIGD 320
++ I++ S D S+RIWDV K K + P + P V+ ++ DG I D
Sbjct: 121 QS-NLIVSGSFDESVRIWDVKTGKCLKTL--PAHSDP----VSAVHFNRDGSLIVSSSYD 173
Query: 321 GSIQVWNLKPGWGSRPDIHVEKGHSDD---ITALKFSSDGRILLSRSFDGSLKVWDLRKM 377
G ++W+ G + I DD ++ +KFS +G+ +L+ + D +LK+WD K
Sbjct: 174 GLCRIWDTASGQCLKTLI------DDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKG 227
Query: 378 KEPLKVFEDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREKLELVSR--- 434
K LK + N FS +TG + L+ ++ + E+V +
Sbjct: 228 K-CLKTYTGHKNEKYCIFANFS------VTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQG 280
Query: 435 ---VGISPACSVVQCAWHPKLNQIFATA 459
V IS AC HP N I + A
Sbjct: 281 HTDVVISTAC-------HPTENIIASAA 301
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 68.9 bits (167), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 83/329 (25%), Positives = 143/329 (43%), Gaps = 57/329 (17%)
Query: 142 EIVLKGHTKIVSALAVDHSGSRVLSGSYDYTVRMYD-FQGMNSRLQSFRQLEPSEGHQVR 200
+ L GHTK VS++ +G + + S D ++++ + G + S +L +
Sbjct: 19 KFTLAGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKTISGHKL------GIS 72
Query: 201 NLSWSPTSDRFLCVTGSAQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHP 260
+++WS S+ + + KI+D ++ G + LK KGH + C ++P
Sbjct: 73 DVAWSSDSNLLVSASDDKTLKIWD---VSSG---------KCLKTLKGHSNYVFCCNFNP 120
Query: 261 KTKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWDCDGKCIAGGIGD 320
++ I++ S D S+RIWDV K K + P + P V+ ++ DG I D
Sbjct: 121 QS-NLIVSGSFDESVRIWDVKTGKCLKTL--PAHSDP----VSAVHFNRDGSLIVSSSYD 173
Query: 321 GSIQVWNLKPGWGSRPDIHVEKGHSDD----ITALKFSSDGRILLSRSFDGSLKVWDLRK 376
G ++W+ G K DD ++ +KFS +G+ +L+ + D +LK+WD K
Sbjct: 174 GLCRIWDTASG-------QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK 226
Query: 377 MKEPLKVFEDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREKLELVSR-- 434
K LK + N FS +TG + L+ ++ + E+V +
Sbjct: 227 GK-CLKTYTGHKNEKYCIFANFS------VTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ 279
Query: 435 ----VGISPACSVVQCAWHPKLNQIFATA 459
V IS AC HP N I + A
Sbjct: 280 GHTDVVISTAC-------HPTENIIASAA 301
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 82/322 (25%), Positives = 138/322 (42%), Gaps = 45/322 (13%)
Query: 143 IVLKGHTKIVSALAVDHSGSRVLSGSYDYTVRMYD-FQGMNSRLQSFRQLEPSEGHQVRN 201
L GHTK VS++ +G + S S D ++++ + G + S +L + +
Sbjct: 20 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKL------GISD 73
Query: 202 LSWSPTSDRFLCVTGSAQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPK 261
++WS S+ + + KI+D ++ G + LK KGH + C ++P+
Sbjct: 74 VAWSSDSNLLVSASDDKTLKIWD---VSSG---------KCLKTLKGHSNYVFCCNFNPQ 121
Query: 262 TKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWDCDGKCIAGGIGDG 321
+ I++ S D S+RIWDV K + P + P V+ ++ DG I DG
Sbjct: 122 S-NLIVSGSFDESVRIWDVKTGMCLKTL--PAHSDP----VSAVHFNRDGSLIVSSSYDG 174
Query: 322 SIQVWNLKPGWGSRPDIHVEKGHSDD----ITALKFSSDGRILLSRSFDGSLKVWDLRKM 377
++W+ G K DD ++ +KFS +G+ +L+ + D +LK+WD K
Sbjct: 175 LCRIWDTASG-------QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKG 227
Query: 378 KEPLKVFEDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREKLELVSRVGI 437
K LK + N FS ++ S + L +KL+ + V I
Sbjct: 228 K-CLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKEIVQKLQGHTDVVI 286
Query: 438 SPACSVVQCAWHPKLNQIFATA 459
S AC HP N I + A
Sbjct: 287 STAC-------HPTENIIASAA 301
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 51/239 (21%), Positives = 97/239 (40%), Gaps = 44/239 (18%)
Query: 145 LKGHTKIVSALAVDHSGSRVLSGSYDYTVRMYDFQ-GMNSRLQSFRQLEPSEGHQVRNLS 203
LKGH+ V + + ++SGS+D +VR++D + GM + L P+ V +
Sbjct: 106 LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGM-----CLKTL-PAHSDPVSAVH 159
Query: 204 WSPTSDRFLCVTGSAQAKIYDR-DGLTLGEFVKGD----MYIRDLKNTKGHICGLTCGEW 258
++ + + +I+D G L + D +++ N K
Sbjct: 160 FNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGK----------- 208
Query: 259 HPKTKETILTSSEDGSLRIWDVNEFKSQKQVI---KPKLARPGRVAVTTCAWDCDGKCIA 315
IL ++ D +L++WD ++ K K K +VT GK I
Sbjct: 209 ------YILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVT------GGKWIV 256
Query: 316 GGIGDGSIQVWNLKPGWGSRPDIHVEKGHSDDITALKFSSDGRILLSRSF--DGSLKVW 372
G D + +WNL+ ++ + +GH+D + + I+ S + D ++K+W
Sbjct: 257 SGSEDNMVYIWNLQ----TKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 311
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 76/159 (47%), Gaps = 6/159 (3%)
Query: 258 WHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPGRVAVTT-CAWDCDGKCIAG 316
W+P +L++S+D ++ +WD+N + +VI K G AV AW + + G
Sbjct: 189 WNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFG 248
Query: 317 GIGDGS-IQVWNLKPGWGSRPDIHVEKGHSDDITALKFSSDGRILLSR-SFDGSLKVWDL 374
+ D + +W+ + S+P H H+ ++ L F+ +L+ S D ++ +WDL
Sbjct: 249 SVADDQKLMIWDTRNNNTSKPS-HTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDL 307
Query: 375 RKMKEPLKVFEDLPNNYAQTNVAFSPDEQLFLTGTSVER 413
R +K L FE + Q V +SP + L + +R
Sbjct: 308 RNLKLKLHSFESHKDEIFQ--VQWSPHNETILASSGTDR 344
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/155 (22%), Positives = 67/155 (43%), Gaps = 32/155 (20%)
Query: 144 VLKGHTKIVSALAVDHSGSRVL-SGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNL 202
+ HT V+ L+ + +L +GS D TV ++D + + +L SF S ++ +
Sbjct: 272 TVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFE----SHKDEIFQV 327
Query: 203 SWSPTSDRFLCVTGSAQAKIYDRDGLTLGE---------------FVKGDMYIRDLKNTK 247
WSP ++ L +G+ + +++ D +GE F+ G
Sbjct: 328 QWSPHNETILASSGTDR-RLHVWDLSKIGEEQSTEDAEDGPPELLFIHG----------- 375
Query: 248 GHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNE 282
GH ++ W+P I + SED +++W + E
Sbjct: 376 GHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAE 410
Score = 34.3 bits (77), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 42/196 (21%), Positives = 83/196 (42%), Gaps = 24/196 (12%)
Query: 144 VLKGHTKIVSALAVDHSGSRVLSGSY--DYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRN 201
+ GHT +V +A H L GS D + ++D + N+ S + +V
Sbjct: 226 IFTGHTAVVEDVAW-HLLHESLFGSVADDQKLMIWDTRNNNTSKPS--HTVDAHTAEVNC 282
Query: 202 LSWSPTSDRFLCVTGSAQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPK 261
LS++P S+ F+ TGSA + L + + + ++ K I + +W P
Sbjct: 283 LSFNPYSE-FILATGSADKTV------ALWDLRNLKLKLHSFESHKDEIFQV---QWSPH 332
Query: 262 TKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARP-------GRVA-VTTCAWDCDGKC 313
+ + +S D L +WD+++ ++ + P G A ++ +W+ +
Sbjct: 333 NETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPW 392
Query: 314 IAGGIGDGSI-QVWNL 328
I + + +I QVW +
Sbjct: 393 IICSVSEDNIMQVWQM 408
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 76/159 (47%), Gaps = 6/159 (3%)
Query: 258 WHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPGRVAVTT-CAWDCDGKCIAG 316
W+P +L++S+D ++ +WD+N + +VI K G AV AW + + G
Sbjct: 191 WNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFG 250
Query: 317 GIGDGS-IQVWNLKPGWGSRPDIHVEKGHSDDITALKFSSDGRILLSR-SFDGSLKVWDL 374
+ D + +W+ + S+P H H+ ++ L F+ +L+ S D ++ +WDL
Sbjct: 251 SVADDQKLMIWDTRNNNTSKPS-HTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDL 309
Query: 375 RKMKEPLKVFEDLPNNYAQTNVAFSPDEQLFLTGTSVER 413
R +K L FE + Q V +SP + L + +R
Sbjct: 310 RNLKLKLHSFESHKDEIFQ--VQWSPHNETILASSGTDR 346
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/155 (22%), Positives = 67/155 (43%), Gaps = 32/155 (20%)
Query: 144 VLKGHTKIVSALAVDHSGSRVL-SGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNL 202
+ HT V+ L+ + +L +GS D TV ++D + + +L SF S ++ +
Sbjct: 274 TVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFE----SHKDEIFQV 329
Query: 203 SWSPTSDRFLCVTGSAQAKIYDRDGLTLGE---------------FVKGDMYIRDLKNTK 247
WSP ++ L +G+ + +++ D +GE F+ G
Sbjct: 330 QWSPHNETILASSGTDR-RLHVWDLSKIGEEQSTEDAEDGPPELLFIHG----------- 377
Query: 248 GHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNE 282
GH ++ W+P I + SED +++W + E
Sbjct: 378 GHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAE 412
Score = 34.3 bits (77), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 42/196 (21%), Positives = 83/196 (42%), Gaps = 24/196 (12%)
Query: 144 VLKGHTKIVSALAVDHSGSRVLSGSY--DYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRN 201
+ GHT +V +A H L GS D + ++D + N+ S + +V
Sbjct: 228 IFTGHTAVVEDVAW-HLLHESLFGSVADDQKLMIWDTRNNNTSKPS--HTVDAHTAEVNC 284
Query: 202 LSWSPTSDRFLCVTGSAQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPK 261
LS++P S+ F+ TGSA + L + + + ++ K I + +W P
Sbjct: 285 LSFNPYSE-FILATGSADKTV------ALWDLRNLKLKLHSFESHKDEIFQV---QWSPH 334
Query: 262 TKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARP-------GRVA-VTTCAWDCDGKC 313
+ + +S D L +WD+++ ++ + P G A ++ +W+ +
Sbjct: 335 NETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPW 394
Query: 314 IAGGIGDGSI-QVWNL 328
I + + +I QVW +
Sbjct: 395 IICSVSEDNIMQVWQM 410
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 67.4 bits (163), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 76/159 (47%), Gaps = 6/159 (3%)
Query: 258 WHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPGRVAVTT-CAWDCDGKCIAG 316
W+P +L++S+D ++ +WD+N + +VI K G AV AW + + G
Sbjct: 193 WNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFG 252
Query: 317 GIGDGS-IQVWNLKPGWGSRPDIHVEKGHSDDITALKFSSDGRILLSR-SFDGSLKVWDL 374
+ D + +W+ + S+P H H+ ++ L F+ +L+ S D ++ +WDL
Sbjct: 253 SVADDQKLMIWDTRNNNTSKPS-HTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDL 311
Query: 375 RKMKEPLKVFEDLPNNYAQTNVAFSPDEQLFLTGTSVER 413
R +K L FE + Q V +SP + L + +R
Sbjct: 312 RNLKLKLHSFESHKDEIFQ--VQWSPHNETILASSGTDR 348
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/155 (22%), Positives = 67/155 (43%), Gaps = 32/155 (20%)
Query: 144 VLKGHTKIVSALAVDHSGSRVL-SGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNL 202
+ HT V+ L+ + +L +GS D TV ++D + + +L SF S ++ +
Sbjct: 276 TVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFE----SHKDEIFQV 331
Query: 203 SWSPTSDRFLCVTGSAQAKIYDRDGLTLGE---------------FVKGDMYIRDLKNTK 247
WSP ++ L +G+ + +++ D +GE F+ G
Sbjct: 332 QWSPHNETILASSGTDR-RLHVWDLSKIGEEQSTEDAEDGPPELLFIHG----------- 379
Query: 248 GHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNE 282
GH ++ W+P I + SED +++W + E
Sbjct: 380 GHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAE 414
Score = 34.3 bits (77), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 42/196 (21%), Positives = 83/196 (42%), Gaps = 24/196 (12%)
Query: 144 VLKGHTKIVSALAVDHSGSRVLSGSY--DYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRN 201
+ GHT +V +A H L GS D + ++D + N+ S + +V
Sbjct: 230 IFTGHTAVVEDVAW-HLLHESLFGSVADDQKLMIWDTRNNNTSKPS--HTVDAHTAEVNC 286
Query: 202 LSWSPTSDRFLCVTGSAQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPK 261
LS++P S+ F+ TGSA + L + + + ++ K I + +W P
Sbjct: 287 LSFNPYSE-FILATGSADKTV------ALWDLRNLKLKLHSFESHKDEIFQV---QWSPH 336
Query: 262 TKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARP-------GRVA-VTTCAWDCDGKC 313
+ + +S D L +WD+++ ++ + P G A ++ +W+ +
Sbjct: 337 NETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPW 396
Query: 314 IAGGIGDGSI-QVWNL 328
I + + +I QVW +
Sbjct: 397 IICSVSEDNIMQVWQM 412
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 82/322 (25%), Positives = 137/322 (42%), Gaps = 45/322 (13%)
Query: 143 IVLKGHTKIVSALAVDHSGSRVLSGSYDYTVRMYD-FQGMNSRLQSFRQLEPSEGHQVRN 201
L GHTK VS++ +G + S S D ++++ + G + S +L + +
Sbjct: 20 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKL------GISD 73
Query: 202 LSWSPTSDRFLCVTGSAQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPK 261
++WS S+ + + KI+D ++ G + LK KGH + C ++P+
Sbjct: 74 VAWSSDSNLLVSASDDKTLKIWD---VSSG---------KCLKTLKGHSNYVFCCNFNPQ 121
Query: 262 TKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWDCDGKCIAGGIGDG 321
+ I++ S D S+RIWDV K + P + P V+ ++ DG I DG
Sbjct: 122 S-NLIVSGSFDESVRIWDVKTGMCLKTL--PAHSDP----VSAVHFNRDGSLIVSSSYDG 174
Query: 322 SIQVWNLKPGWGSRPDIHVEKGHSDD----ITALKFSSDGRILLSRSFDGSLKVWDLRKM 377
++W+ G K DD ++ +KFS +G+ +L+ + D LK+WD K
Sbjct: 175 LCRIWDTASG-------QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNDLKLWDYSKG 227
Query: 378 KEPLKVFEDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREKLELVSRVGI 437
K LK + N FS ++ S + L +KL+ + V I
Sbjct: 228 K-CLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKEIVQKLQGHTDVVI 286
Query: 438 SPACSVVQCAWHPKLNQIFATA 459
S AC HP N I + A
Sbjct: 287 STAC-------HPTENIIASAA 301
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 51/239 (21%), Positives = 96/239 (40%), Gaps = 44/239 (18%)
Query: 145 LKGHTKIVSALAVDHSGSRVLSGSYDYTVRMYDFQ-GMNSRLQSFRQLEPSEGHQVRNLS 203
LKGH+ V + + ++SGS+D +VR++D + GM + L P+ V +
Sbjct: 106 LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGM-----CLKTL-PAHSDPVSAVH 159
Query: 204 WSPTSDRFLCVTGSAQAKIYDR-DGLTLGEFVKGD----MYIRDLKNTKGHICGLTCGEW 258
++ + + +I+D G L + D +++ N K
Sbjct: 160 FNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGK----------- 208
Query: 259 HPKTKETILTSSEDGSLRIWDVNEFKSQKQVI---KPKLARPGRVAVTTCAWDCDGKCIA 315
IL ++ D L++WD ++ K K K +VT GK I
Sbjct: 209 ------YILAATLDNDLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVT------GGKWIV 256
Query: 316 GGIGDGSIQVWNLKPGWGSRPDIHVEKGHSDDITALKFSSDGRILLSRSF--DGSLKVW 372
G D + +WNL+ ++ + +GH+D + + I+ S + D ++K+W
Sbjct: 257 SGSEDNMVYIWNLQ----TKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 311
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 66.6 bits (161), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 67/284 (23%), Positives = 123/284 (43%), Gaps = 43/284 (15%)
Query: 142 EIVLKGHTKIVSALAVDHSGSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRN 201
E LKGHT V ++ DHSG + S S D T++++DFQG + R + + H V +
Sbjct: 143 ERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQG----FECIRTMHGHD-HNVSS 197
Query: 202 LSWSPTSDRFLCVTGSAQAKIYD-RDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHP 260
+S P D + + K+++ + G + F ++R ++ P
Sbjct: 198 VSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVR---------------P 242
Query: 261 KTKETILTS-SEDGSLRIWDV------NEFKSQKQVIK-----PKLARPGRVAVTTCAWD 308
T++ S S D ++R+W V E + + V++ P+ + T
Sbjct: 243 NQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETK 302
Query: 309 CDGK---CIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHSDDITALKFSSDGRILLSRSF 365
GK + G D +I++W++ G + GH + + + F S G+ +LS +
Sbjct: 303 KSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLV----GHDNWVRGVLFHSGGKFILSCAD 358
Query: 366 DGSLKVWDLRKMKEPLKVFEDLPNNYAQTNVAFSPDEQLFLTGT 409
D +L+VWD K K +K + + T++ F +TG+
Sbjct: 359 DKTLRVWDY-KNKRCMKTLN--AHEHFVTSLDFHKTAPYVVTGS 399
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 63/270 (23%), Positives = 119/270 (44%), Gaps = 42/270 (15%)
Query: 144 VLKGHTKIVSALAVDHSGSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQ--VRN 201
L GH+ V +A G + S S D TV++++ G + L+ GH VR
Sbjct: 339 TLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNG--------QLLQTLTGHSSSVRG 390
Query: 202 LSWSPTSDRFLCVTGSAQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPK 261
+++SP + K+++R+G + L+ GH + + P
Sbjct: 391 VAFSPDGQTIASASDDKTVKLWNRNG-------------QLLQTLTGHSSSVWGVAFSPD 437
Query: 262 TKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWDCDGKCIAGGIGDG 321
+TI ++S+D ++++W+ N Q+++ +V A+ DG+ IA D
Sbjct: 438 -DQTIASASDDKTVKLWNRN-----GQLLQTLTGHSS--SVRGVAFSPDGQTIASASDDK 489
Query: 322 SIQVWNLKPGWGSRPDIHVEKGHSDDITALKFSSDGRILLSRSFDGSLKVWDLRKMKEPL 381
++++WN + GHS + + FS DG+ + S S D ++K+W+
Sbjct: 490 TVKLWNRNG-----QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG----- 539
Query: 382 KVFEDLPNNYAQT-NVAFSPDEQLFLTGTS 410
++ + L + + VAFSPD Q + +S
Sbjct: 540 QLLQTLTGHSSSVWGVAFSPDGQTIASASS 569
Score = 63.5 bits (153), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 62/263 (23%), Positives = 116/263 (44%), Gaps = 42/263 (15%)
Query: 144 VLKGHTKIVSALAVDHSGSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQ--VRN 201
L GH+ V +A G + S S D TV++++ G + L+ GH VR
Sbjct: 52 TLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNG--------QLLQTLTGHSSSVRG 103
Query: 202 LSWSPTSDRFLCVTGSAQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPK 261
+++SP + K+++R+G + L+ GH + + P
Sbjct: 104 VAFSPDGQTIASASDDKTVKLWNRNG-------------QLLQTLTGHSSSVWGVAFSPD 150
Query: 262 TKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWDCDGKCIAGGIGDG 321
+TI ++S+D ++++W+ N Q+++ +V A+ DG+ IA D
Sbjct: 151 -GQTIASASDDKTVKLWNRN-----GQLLQTLTGHSS--SVWGVAFSPDGQTIASASDDK 202
Query: 322 SIQVWNLKPGWGSRPDIHVEKGHSDDITALKFSSDGRILLSRSFDGSLKVWDLRKMKEPL 381
++++WN + GHS + + FS DG+ + S S D ++K+W+
Sbjct: 203 TVKLWNRNG-----QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG----- 252
Query: 382 KVFEDLPNNYAQTN-VAFSPDEQ 403
++ + L + + N VAF PD Q
Sbjct: 253 QLLQTLTGHSSSVNGVAFRPDGQ 275
Score = 58.9 bits (141), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 60/263 (22%), Positives = 112/263 (42%), Gaps = 42/263 (15%)
Query: 144 VLKGHTKIVSALAVDHSGSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQ--VRN 201
L GH+ V +A G + S S D TV++++ G + L+ GH V
Sbjct: 216 TLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG--------QLLQTLTGHSSSVNG 267
Query: 202 LSWSPTSDRFLCVTGSAQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPK 261
+++ P + K+++R+G + L+ GH + + P
Sbjct: 268 VAFRPDGQTIASASDDKTVKLWNRNG-------------QLLQTLTGHSSSVWGVAFSPD 314
Query: 262 TKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWDCDGKCIAGGIGDG 321
+TI ++S+D ++++W+ N Q +V A+ DG+ IA D
Sbjct: 315 -GQTIASASDDKTVKLWNRNGQHLQTLTGHSS-------SVWGVAFSPDGQTIASASDDK 366
Query: 322 SIQVWNLKPGWGSRPDIHVEKGHSDDITALKFSSDGRILLSRSFDGSLKVWDLRKMKEPL 381
++++WN + GHS + + FS DG+ + S S D ++K+W+
Sbjct: 367 TVKLWNRNG-----QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG----- 416
Query: 382 KVFEDLPNNYAQT-NVAFSPDEQ 403
++ + L + + VAFSPD+Q
Sbjct: 417 QLLQTLTGHSSSVWGVAFSPDDQ 439
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 73/323 (22%), Positives = 136/323 (42%), Gaps = 51/323 (15%)
Query: 144 VLKGHTKIVSALAVDHSGSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQ--VRN 201
L GH+ V +A G + S S D TV++++ G + L+ GH V
Sbjct: 298 TLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNG--------QHLQTLTGHSSSVWG 349
Query: 202 LSWSPTSDRFLCVTGSAQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPK 261
+++SP + K+++R+G + L+ GH + + P
Sbjct: 350 VAFSPDGQTIASASDDKTVKLWNRNG-------------QLLQTLTGHSSSVRGVAFSPD 396
Query: 262 TKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWDCDGKCIAGGIGDG 321
+TI ++S+D ++++W+ N Q+++ +V A+ D + IA D
Sbjct: 397 -GQTIASASDDKTVKLWNRN-----GQLLQTLTGHSS--SVWGVAFSPDDQTIASASDDK 448
Query: 322 SIQVWNLKPGWGSRPDIHVEKGHSDDITALKFSSDGRILLSRSFDGSLKVWDLRKMKEPL 381
++++WN + GHS + + FS DG+ + S S D ++K+W+
Sbjct: 449 TVKLWNRNG-----QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG----- 498
Query: 382 KVFEDLPNNYAQT-NVAFSPDEQLFLTGTSVERESTTGGLLCFYDREKLELVSRVGISPA 440
++ + L + + VAFSPD Q S + T + ++R L + G S
Sbjct: 499 QLLQTLTGHSSSVRGVAFSPDGQTI---ASASDDKT----VKLWNRNGQLLQTLTGHS-- 549
Query: 441 CSVVQCAWHPKLNQIFATAGDKS 463
SV A+ P I + + DK+
Sbjct: 550 SSVWGVAFSPDGQTIASASSDKT 572
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 53/232 (22%), Positives = 102/232 (43%), Gaps = 36/232 (15%)
Query: 144 VLKGHTKIVSALAVDHSGSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQ--VRN 201
L GH+ V +A G + S S D TV++++ G + L+ GH V
Sbjct: 380 TLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG--------QLLQTLTGHSSSVWG 431
Query: 202 LSWSPTSDRFLCVTGSAQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPK 261
+++SP + K+++R+G + L+ GH + + P
Sbjct: 432 VAFSPDDQTIASASDDKTVKLWNRNG-------------QLLQTLTGHSSSVRGVAFSPD 478
Query: 262 TKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWDCDGKCIAGGIGDG 321
+TI ++S+D ++++W+ N Q+++ +V A+ DG+ IA D
Sbjct: 479 -GQTIASASDDKTVKLWNRN-----GQLLQTLTGHSS--SVRGVAFSPDGQTIASASDDK 530
Query: 322 SIQVWNLKPGWGSRPDIHVEKGHSDDITALKFSSDGRILLSRSFDGSLKVWD 373
++++WN + GHS + + FS DG+ + S S D ++K+W+
Sbjct: 531 TVKLWNRNG-----QLLQTLTGHSSSVWGVAFSPDGQTIASASSDKTVKLWN 577
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 69/141 (48%), Gaps = 18/141 (12%)
Query: 264 ETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWDCDGKCIAGGIGDGSI 323
+TI ++S+D ++++W+ N Q+++ +V A+ DG+ IA D ++
Sbjct: 29 QTIASASDDKTVKLWNRN-----GQLLQTLTGHSS--SVWGVAFSPDGQTIASASDDKTV 81
Query: 324 QVWNLKPGWGSRPDIHVEKGHSDDITALKFSSDGRILLSRSFDGSLKVWDLRKMKEPLKV 383
++WN + GHS + + FS DG+ + S S D ++K+W+ ++
Sbjct: 82 KLWNRNG-----QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG-----QL 131
Query: 384 FEDLPNNYAQT-NVAFSPDEQ 403
+ L + + VAFSPD Q
Sbjct: 132 LQTLTGHSSSVWGVAFSPDGQ 152
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 50/104 (48%), Gaps = 11/104 (10%)
Query: 301 AVTTCAWDCDGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHSDDITALKFSSDGRIL 360
+V A+ DG+ IA D ++++WN + GHS + + FS DG+ +
Sbjct: 18 SVRGVAFSPDGQTIASASDDKTVKLWNRNG-----QLLQTLTGHSSSVWGVAFSPDGQTI 72
Query: 361 LSRSFDGSLKVWDLRKMKEPLKVFEDLPNNYAQT-NVAFSPDEQ 403
S S D ++K+W+ ++ + L + + VAFSPD Q
Sbjct: 73 ASASDDKTVKLWNRNG-----QLLQTLTGHSSSVRGVAFSPDGQ 111
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 33/63 (52%), Gaps = 6/63 (9%)
Query: 342 KGHSDDITALKFSSDGRILLSRSFDGSLKVWDLRKMKEPLKVFEDLPNNYAQT-NVAFSP 400
+ HS + + FS DG+ + S S D ++K+W+ ++ + L + + VAFSP
Sbjct: 13 EAHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG-----QLLQTLTGHSSSVWGVAFSP 67
Query: 401 DEQ 403
D Q
Sbjct: 68 DGQ 70
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 63.2 bits (152), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 39/159 (24%), Positives = 76/159 (47%), Gaps = 6/159 (3%)
Query: 258 WHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPGRVAVTT-CAWDCDGKCIAG 316
W+P +L++S+D ++ +WD++ + +V+ K G AV +W + + G
Sbjct: 185 WNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVEDVSWHLLHESLFG 244
Query: 317 GIGDGS-IQVWNLKPGWGSRPDIHVEKGHSDDITALKFSSDGRILLSR-SFDGSLKVWDL 374
+ D + +W+ + S+P H H+ ++ L F+ +L+ S D ++ +WDL
Sbjct: 245 SVADDQKLMIWDTRSNNTSKPS-HSVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDL 303
Query: 375 RKMKEPLKVFEDLPNNYAQTNVAFSPDEQLFLTGTSVER 413
R +K L FE + Q V +SP + L + +R
Sbjct: 304 RNLKLKLHSFESHKDEIFQ--VQWSPHNETILASSGTDR 340
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/153 (22%), Positives = 65/153 (42%), Gaps = 30/153 (19%)
Query: 145 LKGHTKIVSALAVDHSGSRVL-SGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLS 203
+ HT V+ L+ + +L +GS D TV ++D + + +L SF S ++ +
Sbjct: 269 VDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFE----SHKDEIFQVQ 324
Query: 204 WSPTSDRFLCVTGS-AQAKIYD-------------RDGLTLGEFVKGDMYIRDLKNTKGH 249
WSP ++ L +G+ + ++D DG F+ G GH
Sbjct: 325 WSPHNETILASSGTDRRLNVWDLSKIGEEQSPEDAEDGPPELLFIHG-----------GH 373
Query: 250 ICGLTCGEWHPKTKETILTSSEDGSLRIWDVNE 282
++ W+P I + SED +++W + E
Sbjct: 374 TAKISDFSWNPNEPWVICSVSEDNIMQVWQMAE 406
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 40/199 (20%), Positives = 83/199 (41%), Gaps = 30/199 (15%)
Query: 144 VLKGHTKIVSALAVDHSGSRVLSGSY--DYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRN 201
+ GHT +V ++ H L GS D + ++D + N+ S + +V
Sbjct: 222 IFTGHTAVVEDVSW-HLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSV--DAHTAEVNC 278
Query: 202 LSWSPTSDRFLCVTGSAQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPK 261
LS++P S+ F+ TGSA + L + + + ++ K I + +W P
Sbjct: 279 LSFNPYSE-FILATGSADKTV------ALWDLRNLKLKLHSFESHKDEIFQV---QWSPH 328
Query: 262 TKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPG-----------RVAVTTCAWDCD 310
+ + +S D L +WD+++ ++ P+ A G ++ +W+ +
Sbjct: 329 NETILASSGTDRRLNVWDLSKIGEEQ---SPEDAEDGPPELLFIHGGHTAKISDFSWNPN 385
Query: 311 GKCIAGGIGDGSI-QVWNL 328
+ + + +I QVW +
Sbjct: 386 EPWVICSVSEDNIMQVWQM 404
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 63.2 bits (152), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 39/159 (24%), Positives = 76/159 (47%), Gaps = 6/159 (3%)
Query: 258 WHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPGRVAVTT-CAWDCDGKCIAG 316
W+ +L++S+D ++ +WD+N + +++ K G AV AW + + G
Sbjct: 187 WNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESLFG 246
Query: 317 GIGDGS-IQVWNLKPGWGSRPDIHVEKGHSDDITALKFSSDGRILLSR-SFDGSLKVWDL 374
+ D + +W+ + S+P H+ H+ ++ L F+ +L+ S D ++ +WDL
Sbjct: 247 SVADDQKLMIWDTRSNTTSKPS-HLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDL 305
Query: 375 RKMKEPLKVFEDLPNNYAQTNVAFSPDEQLFLTGTSVER 413
R +K L FE + Q V +SP + L + +R
Sbjct: 306 RNLKLKLHTFESHKDEIFQ--VHWSPHNETILASSGTDR 342
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/149 (22%), Positives = 68/149 (45%), Gaps = 20/149 (13%)
Query: 144 VLKGHTKIVSALAVDHSGSRVL-SGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNL 202
++ HT V+ L+ + +L +GS D TV ++D + + +L +F S ++ +
Sbjct: 270 LVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFE----SHKDEIFQV 325
Query: 203 SWSPTSDRFLCVTGSAQAKIYDRDGLTLGEFVKGD---------MYIRDLKNTKGHICGL 253
WSP ++ L +G+ + ++ D +GE + ++I GH +
Sbjct: 326 HWSPHNETILASSGTDR-RLNVWDLSKIGEEQSAEDAEDGPPELLFIH-----GGHTAKI 379
Query: 254 TCGEWHPKTKETILTSSEDGSLRIWDVNE 282
+ W+P I + SED ++IW + E
Sbjct: 380 SDFSWNPNEPWVICSVSEDNIMQIWQMAE 408
Score = 30.0 bits (66), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 39/196 (19%), Positives = 82/196 (41%), Gaps = 24/196 (12%)
Query: 144 VLKGHTKIVSALAVDHSGSRVLSGSY--DYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRN 201
+ GH+ +V +A H L GS D + ++D + + S L + +V
Sbjct: 224 IFTGHSAVVEDVAW-HLLHESLFGSVADDQKLMIWDTRSNTTSKPS--HLVDAHTAEVNC 280
Query: 202 LSWSPTSDRFLCVTGSAQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPK 261
LS++P S+ F+ TGSA + L + + + ++ K I + W P
Sbjct: 281 LSFNPYSE-FILATGSADKTV------ALWDLRNLKLKLHTFESHKDEIFQV---HWSPH 330
Query: 262 TKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARP-------GRVA-VTTCAWDCDGKC 313
+ + +S D L +WD+++ ++ + P G A ++ +W+ +
Sbjct: 331 NETILASSGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIHGGHTAKISDFSWNPNEPW 390
Query: 314 IAGGIGDGSI-QVWNL 328
+ + + +I Q+W +
Sbjct: 391 VICSVSEDNIMQIWQM 406
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 62.4 bits (150), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 39/159 (24%), Positives = 76/159 (47%), Gaps = 6/159 (3%)
Query: 258 WHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPGRVAVTT-CAWDCDGKCIAG 316
W+ +L++S+D ++ +WD+N + +++ K G AV AW + + G
Sbjct: 187 WNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESLFG 246
Query: 317 GIGDGS-IQVWNLKPGWGSRPDIHVEKGHSDDITALKFSSDGRILLSR-SFDGSLKVWDL 374
+ D + +W+ + S+P H+ H+ ++ L F+ +L+ S D ++ +WDL
Sbjct: 247 SVADDQKLXIWDTRSNTTSKPS-HLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDL 305
Query: 375 RKMKEPLKVFEDLPNNYAQTNVAFSPDEQLFLTGTSVER 413
R +K L FE + Q V +SP + L + +R
Sbjct: 306 RNLKLKLHTFESHKDEIFQ--VHWSPHNETILASSGTDR 342
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/149 (22%), Positives = 66/149 (44%), Gaps = 20/149 (13%)
Query: 144 VLKGHTKIVSALAVDHSGSRVL-SGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNL 202
++ HT V+ L+ + +L +GS D TV ++D + + +L +F S ++ +
Sbjct: 270 LVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFE----SHKDEIFQV 325
Query: 203 SWSPTSDRFLCVTGSAQAKIYDRDGLTLGEFVKGD---------MYIRDLKNTKGHICGL 253
WSP ++ L +G+ + ++ D +GE + ++I GH +
Sbjct: 326 HWSPHNETILASSGTDR-RLNVWDLSKIGEEQSAEDAEDGPPELLFIH-----GGHTAKI 379
Query: 254 TCGEWHPKTKETILTSSEDGSLRIWDVNE 282
+ W+P I + SED +IW E
Sbjct: 380 SDFSWNPNEPWVICSVSEDNIXQIWQXAE 408
Score = 29.6 bits (65), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 32/146 (21%), Positives = 63/146 (43%), Gaps = 15/146 (10%)
Query: 144 VLKGHTKIVSALAVDHSGSRVLSGSY--DYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRN 201
+ GH+ +V +A H L GS D + ++D + + S L + +V
Sbjct: 224 IFTGHSAVVEDVAW-HLLHESLFGSVADDQKLXIWDTRSNTTSKPS--HLVDAHTAEVNC 280
Query: 202 LSWSPTSDRFLCVTGSAQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPK 261
LS++P S+ F+ TGSA + L + + + ++ K I + W P
Sbjct: 281 LSFNPYSE-FILATGSADKTV------ALWDLRNLKLKLHTFESHKDEIFQV---HWSPH 330
Query: 262 TKETILTSSEDGSLRIWDVNEFKSQK 287
+ + +S D L +WD+++ ++
Sbjct: 331 NETILASSGTDRRLNVWDLSKIGEEQ 356
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 70/272 (25%), Positives = 118/272 (43%), Gaps = 37/272 (13%)
Query: 145 LKGHTKIVSALAVDHSGSRVLSGSYDYTVRMYDF-QGMNSRLQSFRQLEPSEGHQVRNLS 203
L+GH+ VS + + G LSGS+D T+R++D G +R GH LS
Sbjct: 59 LRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTR--------RFVGHTKDVLS 110
Query: 204 WSPTSDRFLCVTGSAQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTK 263
+ +SD V+GS I + L + ++ D + H ++C + P +
Sbjct: 111 VAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQD---------ESHSEWVSCVRFSPNSS 161
Query: 264 ETILTSS-EDGSLRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWDCDGKCIAGGIGDGS 322
I+ S D +++W++ K + + G + T + DG A G DG
Sbjct: 162 NPIIVSCGWDKLVKVWNLANCKLKTN----HIGHTGYLNTVTVS--PDGSLCASGGKDGQ 215
Query: 323 IQVWNLKPGWGSRPDIHVEKGHSDDITALKFSSDGRILLSRSFDGSLKVWDL--RKMKEP 380
+W+L G ++ G D I AL FS + R L + S+K+WDL + + +
Sbjct: 216 AMLWDLNEG----KHLYTLDG-GDIINALCFSPN-RYWLCAATGPSIKIWDLEGKIIVDE 269
Query: 381 LKVFEDLPNNYAQ----TNVAFSPDEQLFLTG 408
LK ++ A+ T++A+S D Q G
Sbjct: 270 LKQEVISTSSKAEPPQCTSLAWSADGQTLFAG 301
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 66/130 (50%), Gaps = 15/130 (11%)
Query: 342 KGHSDDITALKFSSDGRILLSRSFDGSLKVWDLRKMKEPLKVFEDLPNNYAQTNVAFSPD 401
+GHS ++ + SSDG+ LS S+DG+L++WDL + + + VAFS D
Sbjct: 60 RGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLS---VAFSSD 116
Query: 402 EQLFLTGT---SVERESTTGGLLCFY---DREKLELVSRVGISPACS---VVQCAWHPKL 452
+ ++G+ +++ +T G +C Y D E VS V SP S +V C W KL
Sbjct: 117 NRQIVSGSRDKTIKLWNTLG--VCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGW-DKL 173
Query: 453 NQIFATAGDK 462
+++ A K
Sbjct: 174 VKVWNLANCK 183
Score = 34.3 bits (77), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 51/219 (23%), Positives = 85/219 (38%), Gaps = 40/219 (18%)
Query: 147 GHTKIVSALAVDHSGSRVLSGSYDYTVRMYDFQGM---------NSRLQSFRQLEPSEGH 197
GHTK V ++A +++SGS D T+++++ G+ +S S + P+ +
Sbjct: 103 GHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSN 162
Query: 198 ------------QVRNLSWSPTSDRFLCVTGSAQAKIYDRDGLTLGEFVK-GDMYIRDLK 244
+V NL+ + TG DG K G + DL
Sbjct: 163 PIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLN 222
Query: 245 NTKGHICGLTCGE------WHPKTKETILTSSEDGSLRIWD------VNEFKSQKQVIKP 292
K H+ L G+ + P L ++ S++IWD V+E K +
Sbjct: 223 EGK-HLYTLDGGDIINALCFSPN--RYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSS 279
Query: 293 KLARPGRVAVTTCAWDCDGKCIAGGIGDGSIQVWNLKPG 331
K P T+ AW DG+ + G D ++VW + G
Sbjct: 280 KAEPP---QCTSLAWSADGQTLFAGYTDNLVRVWQVTIG 315
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 70/272 (25%), Positives = 118/272 (43%), Gaps = 37/272 (13%)
Query: 145 LKGHTKIVSALAVDHSGSRVLSGSYDYTVRMYDF-QGMNSRLQSFRQLEPSEGHQVRNLS 203
L+GH+ VS + + G LSGS+D T+R++D G +R GH LS
Sbjct: 82 LRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTR--------RFVGHTKDVLS 133
Query: 204 WSPTSDRFLCVTGSAQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTK 263
+ +SD V+GS I + L + ++ D + H ++C + P +
Sbjct: 134 VAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQD---------ESHSEWVSCVRFSPNSS 184
Query: 264 ETILTSS-EDGSLRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWDCDGKCIAGGIGDGS 322
I+ S D +++W++ K + + G + T + DG A G DG
Sbjct: 185 NPIIVSCGWDKLVKVWNLANCKLKTN----HIGHTGYLNTVTVS--PDGSLCASGGKDGQ 238
Query: 323 IQVWNLKPGWGSRPDIHVEKGHSDDITALKFSSDGRILLSRSFDGSLKVWDL--RKMKEP 380
+W+L G ++ G D I AL FS + R L + S+K+WDL + + +
Sbjct: 239 AMLWDLNEG----KHLYTLDG-GDIINALCFSPN-RYWLCAATGPSIKIWDLEGKIIVDE 292
Query: 381 LKVFEDLPNNYAQ----TNVAFSPDEQLFLTG 408
LK ++ A+ T++A+S D Q G
Sbjct: 293 LKQEVISTSSKAEPPQCTSLAWSADGQTLFAG 324
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 66/130 (50%), Gaps = 15/130 (11%)
Query: 342 KGHSDDITALKFSSDGRILLSRSFDGSLKVWDLRKMKEPLKVFEDLPNNYAQTNVAFSPD 401
+GHS ++ + SSDG+ LS S+DG+L++WDL + + + VAFS D
Sbjct: 83 RGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLS---VAFSSD 139
Query: 402 EQLFLTGT---SVERESTTGGLLCFY---DREKLELVSRVGISPACS---VVQCAWHPKL 452
+ ++G+ +++ +T G +C Y D E VS V SP S +V C W KL
Sbjct: 140 NRQIVSGSRDKTIKLWNTLG--VCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGW-DKL 196
Query: 453 NQIFATAGDK 462
+++ A K
Sbjct: 197 VKVWNLANCK 206
Score = 34.3 bits (77), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 52/219 (23%), Positives = 88/219 (40%), Gaps = 40/219 (18%)
Query: 147 GHTKIVSALAVDHSGSRVLSGSYDYTVRMYDFQGM---------NSRLQSFRQLEPSEGH 197
GHTK V ++A +++SGS D T+++++ G+ +S S + P+ +
Sbjct: 126 GHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSN 185
Query: 198 ------------QVRNLSWSPTSDRFLCVTGSAQAKIYDRDGLTLGEFVK-GDMYIRDLK 244
+V NL+ + TG DG K G + DL
Sbjct: 186 PIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLN 245
Query: 245 NTKGHICGLTCGE------WHPKTKETILTSSEDGSLRIWD------VNEFKSQKQVIKP 292
K H+ L G+ + P L ++ S++IWD V+E K Q+ +
Sbjct: 246 EGK-HLYTLDGGDIINALCFSPN--RYWLCAATGPSIKIWDLEGKIIVDELK-QEVISTS 301
Query: 293 KLARPGRVAVTTCAWDCDGKCIAGGIGDGSIQVWNLKPG 331
A P + T+ AW DG+ + G D ++VW + G
Sbjct: 302 SKAEPPQC--TSLAWSADGQTLFAGYTDNLVRVWQVTIG 338
>pdb|1PI6|A Chain A, Yeast Actin Interacting Protein 1 (Aip1), Orthorhombic
Crystal Form
Length = 615
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 73/270 (27%), Positives = 123/270 (45%), Gaps = 28/270 (10%)
Query: 145 LKGHTKIVSALAVDHSG-SRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLS 203
+ GH++ ++A + S R ++ D +V Y QG + + + +G VR++
Sbjct: 156 VSGHSQRINACHLKQSRPMRSMTVGDDGSVVFY--QGPPFKFSASDRTHHKQGSFVRDVE 213
Query: 204 WSPTSDRFLCVTGSAQAKIYDRDGLTLGEFVKGDMYIRDLKN-TKGHICGLTCGEWHPKT 262
+SP S F+ GS + KI DG + GEF+K YI D + +G I L+ W
Sbjct: 214 FSPDSGEFVITVGSDR-KISCFDGKS-GEFLK---YIEDDQEPVQGGIFALS---WLDSQ 265
Query: 263 KETILTSSEDGSLRIWDVNEFKS-QKQVIKPKLARPGRVAVTTCAWDCDGKCIAGGIGDG 321
K T D ++R+WDV K QK + + +V V +G+ I+ + DG
Sbjct: 266 K--FATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATG---NGRIISLSL-DG 319
Query: 322 SIQVWNLKPGWGSRPDIHVEKGHSDDITALKFSSDGRILLSRSFDGSLKVWDLRKM-KEP 380
++ + L G + GH+ ITAL + L+S S+DG + W M ++
Sbjct: 320 TLNFYEL----GHDEVLKTISGHNKGITALTVNP----LISGSYDGRIMEWSSSSMHQDH 371
Query: 381 LKVFEDLPNNYAQTNVAFSPDEQLFLTGTS 410
+ L N+ AQ + S D+ L + G +
Sbjct: 372 SNLIVSLDNSKAQEYSSISWDDTLKVNGIT 401
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 67/244 (27%), Positives = 116/244 (47%), Gaps = 33/244 (13%)
Query: 145 LKGHTKIVSALAVDHSGSRVLSGSYDYTVRMYDF-QGMNSRLQSFRQLEPSEGHQVRNLS 203
L GH+ V + + G LSGS+D +R++D G+++R R + GH LS
Sbjct: 426 LTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTR----RFV----GHTKDVLS 477
Query: 204 WSPTSDRFLCVTGSAQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTK 263
+ + D V+ S I + L G+ + +GH ++C + P T
Sbjct: 478 VAFSLDNRQIVSASRDRTIKLWNTL-------GECKYTISEGGEGHRDWVSCVRFSPNTL 530
Query: 264 E-TILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPGRVA-VTTCAWDCDGKCIAGGIGDG 321
+ TI+++S D ++++W+++ K ++ LA G V+T A DG A G DG
Sbjct: 531 QPTIVSASWDKTVKVWNLSNCK-----LRSTLA--GHTGYVSTVAVSPDGSLCASGGKDG 583
Query: 322 SIQVWNLKPGWGSRPDIHVEKGHSDDITALKFSSDGRILLSRSFDGSLKVWDL--RKMKE 379
+ +W+L G ++ + +S I AL FS + R L + + +K+WDL + + E
Sbjct: 584 VVLLWDLAEG----KKLYSLEANS-VIHALCFSPN-RYWLCAATEHGIKIWDLESKSIVE 637
Query: 380 PLKV 383
LKV
Sbjct: 638 DLKV 641
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 56/110 (50%), Gaps = 5/110 (4%)
Query: 264 ETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWDCDGKCIAGGIGDGSI 323
+ I+++S D S+ +W + + V + +L V DG+ G DG +
Sbjct: 396 DIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHF-VEDVVLSSDGQFALSGSWDGEL 454
Query: 324 QVWNLKPGWGSRPDIHVEKGHSDDITALKFSSDGRILLSRSFDGSLKVWD 373
++W+L G +R + GH+ D+ ++ FS D R ++S S D ++K+W+
Sbjct: 455 RLWDLAAGVSTRRFV----GHTKDVLSVAFSLDNRQIVSASRDRTIKLWN 500
Score = 35.4 bits (80), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 43/181 (23%), Positives = 78/181 (43%), Gaps = 39/181 (21%)
Query: 164 VLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSDRFLCVTGSAQAKIY 223
++S S+D TV++++ N +L+S L G+ V ++ SP D LC +G
Sbjct: 534 IVSASWDKTVKVWNLS--NCKLRS--TLAGHTGY-VSTVAVSP--DGSLCASGG------ 580
Query: 224 DRDGLTL-GEFVKGD-MYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVN 281
+DG+ L + +G +Y + + +C W L ++ + ++IWD+
Sbjct: 581 -KDGVVLLWDLAEGKKLYSLEANSVIHALCFSPNRYW--------LCAATEHGIKIWDL- 630
Query: 282 EFKSQKQVIK--------------PKLARPGRVAVTTCAWDCDGKCIAGGIGDGSIQVWN 327
E KS + +K P + + T+ W DG + G DG I+VW
Sbjct: 631 ESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWG 690
Query: 328 L 328
+
Sbjct: 691 I 691
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 55/188 (29%), Positives = 94/188 (50%), Gaps = 27/188 (14%)
Query: 201 NLSWSPTSDRFLCVTGSAQAKIYDRDGLTLGEFVKGDMYIR--DLKNTK------GHICG 252
N S SP+SD ++ ++ + DG L + D IR D++N K GH
Sbjct: 115 NTSSSPSSDLYI------RSVCFSPDGKFLATGAE-DRLIRIWDIENRKIVMILQGHEQD 167
Query: 253 LTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWD-CDG 311
+ ++ P + + +++ S D ++RIWD+ + + L VTT A DG
Sbjct: 168 IYSLDYFP-SGDKLVSGSGDRTVRIWDL-------RTGQCSLTLSIEDGVTTVAVSPGDG 219
Query: 312 KCIAGGIGDGSIQVWNLKPGW-GSRPDIHVEKG--HSDDITALKFSSDGRILLSRSFDGS 368
K IA G D +++VW+ + G+ R D E G H D + ++ F+ DG+ ++S S D S
Sbjct: 220 KYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRS 279
Query: 369 LKVWDLRK 376
+K+W+L+
Sbjct: 280 VKLWNLQN 287
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 62/270 (22%), Positives = 117/270 (43%), Gaps = 48/270 (17%)
Query: 161 GSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQ--VRNLSWSPTSDRFLCVTGSA 218
G + +G+ D +R++D + N ++ Q GH+ + +L + P+ D+ + +G
Sbjct: 135 GKFLATGAEDRLIRIWDIE--NRKIVMILQ-----GHEQDIYSLDYFPSGDKLVSGSGDR 187
Query: 219 QAKIYD-RDG---LTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGS 274
+I+D R G LTL I D G+T P + I S D +
Sbjct: 188 TVRIWDLRTGQCSLTLS--------IED---------GVTTVAVSPGDGKYIAAGSLDRA 230
Query: 275 LRIWDVNE-FKSQKQVIKPKLARPGRVAVTTCAWDCDGKCIAGGIGDGSIQVWNLK---- 329
+R+WD F ++ + + + +V + + DG+ + G D S+++WNL+
Sbjct: 231 VRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANN 290
Query: 330 ------PGWGSRPDIHVEKGHSDDITALKFSSDGRILLSRSFDGSLKVWDLRKMKEPLKV 383
P G+ ++ GH D + ++ + + +LS S D + WD +K PL +
Sbjct: 291 KSDSKTPNSGTCEVTYI--GHKDFVLSVATTQNDEYILSGSKDRGVLFWD-KKSGNPLLM 347
Query: 384 FEDLPNNYAQTNVA----FSPDEQLFLTGT 409
+ N+ VA P+ +F TG+
Sbjct: 348 LQGHRNSVISVAVANGSSLGPEYNVFATGS 377
Score = 29.3 bits (64), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 23/41 (56%)
Query: 147 GHTKIVSALAVDHSGSRVLSGSYDYTVRMYDFQGMNSRLQS 187
GH V ++ G V+SGS D +V++++ Q N++ S
Sbjct: 254 GHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDS 294
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 52.4 bits (124), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 63/249 (25%), Positives = 104/249 (41%), Gaps = 58/249 (23%)
Query: 163 RVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSDRFLCVTGSAQAKI 222
R++SGS D TV + F+G + +S H VR ++P F G +
Sbjct: 162 RIISGSDDNTVAI--FEGPPFKFKSTFGEHTKFVHSVR---YNPDGSLFASTGGDGTIVL 216
Query: 223 YD-RDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVN 281
Y+ DG G F D ++++ ++ G + GLT W P + I ++S D +++IW+V
Sbjct: 217 YNGVDGTKTGVF--EDDSLKNVAHS-GSVFGLT---WSPDGTK-IASASADKTIKIWNVA 269
Query: 282 EFKSQKQV-------------------------------IKPKLARPGRV------AVTT 304
K +K + + P+L +V A+T
Sbjct: 270 TLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITA 329
Query: 305 CAWDCDGKCIAGGIGDGSIQVWNLKPGWGSR--PDIHVEKGHSDDITALKFSSDGRILLS 362
+ DGK + +G I W++ G +R PD+H IT +K +S G L +
Sbjct: 330 LSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATM-----ITGIKTTSKGD-LFT 383
Query: 363 RSFDGSLKV 371
S+D LKV
Sbjct: 384 VSWDDHLKV 392
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 51/226 (22%), Positives = 93/226 (41%), Gaps = 30/226 (13%)
Query: 160 SGSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSDRFLCVTGSAQ 219
SG SG VR++D + P V+++SW S R V G +
Sbjct: 70 SGYYCASGDVHGNVRIWD---TTQTTHILKTTIPVFSGPVKDISWDSESKRIAAV-GEGR 125
Query: 220 AKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICG----LTCGEWHPKTKETILTSSEDGSL 275
+ G +++ D + G++ G + ++ P I++ S+D ++
Sbjct: 126 ERF-------------GHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTV 172
Query: 276 RIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWDCDGKCIAGGIGDGSIQVWNLKPGW--G 333
I++ FK K + V + ++ DG A GDG+I ++N G G
Sbjct: 173 AIFEGPPFK-----FKSTFGEHTKF-VHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTG 226
Query: 334 SRPDIHVEK-GHSDDITALKFSSDGRILLSRSFDGSLKVWDLRKMK 378
D ++ HS + L +S DG + S S D ++K+W++ +K
Sbjct: 227 VFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLK 272
Score = 32.0 bits (71), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 36/80 (45%), Gaps = 5/80 (6%)
Query: 249 HICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWD 308
H + C W P + T S D S+ +W++N+ +IK A +V + W
Sbjct: 535 HTAKVACVSWSPDNVR-LATGSLDNSVIVWNMNKPSDHPIIIKGAHAMS---SVNSVIWL 590
Query: 309 CDGKCIAGGIGDGSIQVWNL 328
+ ++ G D +I+ WN+
Sbjct: 591 NETTIVSAG-QDSNIKFWNV 609
>pdb|1PGU|A Chain A, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
pdb|1PGU|B Chain B, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
Length = 615
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 72/270 (26%), Positives = 121/270 (44%), Gaps = 28/270 (10%)
Query: 145 LKGHTKIVSALAVDHSG-SRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLS 203
+ GH++ ++A + S R + D +V Y QG + + + +G VR++
Sbjct: 156 VSGHSQRINACHLKQSRPXRSXTVGDDGSVVFY--QGPPFKFSASDRTHHKQGSFVRDVE 213
Query: 204 WSPTSDRFLCVTGSAQAKIYDRDGLTLGEFVKGDMYIRDLKN-TKGHICGLTCGEWHPKT 262
+SP S F+ GS + KI DG + GEF+K YI D + +G I L+ W
Sbjct: 214 FSPDSGEFVITVGSDR-KISCFDGKS-GEFLK---YIEDDQEPVQGGIFALS---WLDSQ 265
Query: 263 KETILTSSEDGSLRIWDVNEFKS-QKQVIKPKLARPGRVAVTTCAWDCDGKCIAGGIGDG 321
K T D ++R+WDV K QK + + +V V +G+ I+ + DG
Sbjct: 266 K--FATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATG---NGRIISLSL-DG 319
Query: 322 SIQVWNLKPGWGSRPDIHVEKGHSDDITALKFSSDGRILLSRSFDGSLKVWDLRKM-KEP 380
++ + L G + GH+ ITAL + L+S S+DG + W ++
Sbjct: 320 TLNFYEL----GHDEVLKTISGHNKGITALTVNP----LISGSYDGRIXEWSSSSXHQDH 371
Query: 381 LKVFEDLPNNYAQTNVAFSPDEQLFLTGTS 410
+ L N+ AQ + S D+ L + G +
Sbjct: 372 SNLIVSLDNSKAQEYSSISWDDTLKVNGIT 401
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 54/228 (23%), Positives = 102/228 (44%), Gaps = 30/228 (13%)
Query: 148 HTKIVSALAVDHSGSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSP- 206
HT +SA + +S ++L+ S D T ++D + LQSF G V L +P
Sbjct: 153 HTNYLSACSFTNSDMQILTASGDGTCALWDVES-GQLLQSFH----GHGADVLCLDLAPS 207
Query: 207 -TSDRFLCVTGSAQAKIYD-RDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKE 264
T + F+ +A ++D R G + F + + D+ + + ++P + +
Sbjct: 208 ETGNTFVSGGCDKKAMVWDMRSGQCVQAF---ETHESDVNSVR----------YYP-SGD 253
Query: 265 TILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWDCDGKCIAGGIGDGSIQ 324
+ S+D + R++D+ + K + ++ + G+ + G D +I
Sbjct: 254 AFASGSDDATCRLYDLRADREVAIYSKESII----FGASSVDFSLSGRLLFAGYNDYTIN 309
Query: 325 VWNLKPGWGSRPDIHVEKGHSDDITALKFSSDGRILLSRSFDGSLKVW 372
VW++ G SR I GH + ++ L+ S DG S S+D +L+VW
Sbjct: 310 VWDVLKG--SRVSILF--GHENRVSTLRVSPDGTAFCSGSWDHTLRVW 353
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 48/196 (24%), Positives = 89/196 (45%), Gaps = 16/196 (8%)
Query: 219 QAKIYDRDGLTLGEFVK--GDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLR 276
+AK++D + + E V+ G ++ + KGH + C +W K K I++SS+DG +
Sbjct: 31 RAKLHDVELHQVAERVEALGQFVMKTRRTLKGHGNKVLCMDW-CKDKRRIVSSSQDGKVI 89
Query: 277 IWDVNEFKSQKQVIKPKLARPGRVAVTTCAWDCDGKCIAGGIGDGSIQVWNLKPGWGSRP 336
+WD + V P V CA+ G IA G D V+ L +
Sbjct: 90 VWDSFTTNKEHAVTMPC------TWVMACAYAPSGCAIACGGLDNKCSVYPLT--FDKNE 141
Query: 337 DIHVEKG----HSDDITALKFSSDGRILLSRSFDGSLKVWDLRKMKEPLKVFEDLPNNYA 392
++ +K H++ ++A F++ +L+ S DG+ +WD+ + L+ F +
Sbjct: 142 NMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVES-GQLLQSFHGHGADVL 200
Query: 393 QTNVAFSPDEQLFLTG 408
++A S F++G
Sbjct: 201 CLDLAPSETGNTFVSG 216
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 52/270 (19%), Positives = 100/270 (37%), Gaps = 45/270 (16%)
Query: 152 VSALAVDHSGSRVLSGSYDYTVRMYDFQ-GMNSRLQSFRQLEPSEGHQVRNLSWSPTSDR 210
V A A SG + G D +Y N + + ++ + + S++ + +
Sbjct: 109 VMACAYAPSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQ 168
Query: 211 FLCVTGSAQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHP-KTKETILTS 269
L +G ++D + L L++ GH + C + P +T T ++
Sbjct: 169 ILTASGDGTCALWDVESGQL------------LQSFHGHGADVLCLDLAPSETGNTFVSG 216
Query: 270 SEDGSLRIWD------VNEFKSQKQVIKPKLARPGRVAVTTCAWDCDGKCIAGGIGDGSI 323
D +WD V F++ + + P G A G D +
Sbjct: 217 GCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPS------------GDAFASGSDDATC 264
Query: 324 QVWNLKPGWGSRPDIHVEKGHSDDI----TALKFSSDGRILLSRSFDGSLKVWDLRKMKE 379
++++L R D V + I +++ FS GR+L + D ++ VWD+ K
Sbjct: 265 RLYDL------RADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSR 318
Query: 380 PLKVFEDLPNNYAQTNVAFSPDEQLFLTGT 409
+F + + + SPD F +G+
Sbjct: 319 VSILF---GHENRVSTLRVSPDGTAFCSGS 345
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 21/33 (63%)
Query: 144 VLKGHTKIVSALAVDHSGSRVLSGSYDYTVRMY 176
+L GH VS L V G+ SGS+D+T+R++
Sbjct: 321 ILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVW 353
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 64/283 (22%), Positives = 113/283 (39%), Gaps = 46/283 (16%)
Query: 136 QIPMSNEIVLKGHTKIVSALAVDHSGSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSE 195
+I M L+GH + A+ +LS S D + ++D N ++ + P
Sbjct: 42 RIQMRTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTN-KVHAI----PLR 96
Query: 196 GHQVRNLSWSPTSDRFLCVTGSAQAKIYD---RDGLTLGEFVKGDMYIRDLKNTKGHICG 252
V +++P+ + C IY+ R+G +R + GH
Sbjct: 97 SSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREG-----------NVRVSRELAGHTGY 145
Query: 253 LTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQK-------QVIKPKLARPGRVAVTTC 305
L+C + + I+TSS D + +WD+ + V+ LA R+ V+
Sbjct: 146 LSCCRFLDDNQ--IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVS-- 201
Query: 306 AWDCDGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHSDDITALKFSSDGRILLSRSF 365
G C D S ++W+++ G + GH DI A+ F +G + S
Sbjct: 202 -----GAC------DASAKLWDVREGMCRQT----FTGHESDINAICFFPNGNAFATGSD 246
Query: 366 DGSLKVWDLRKMKEPLKVFEDLPNNYAQTNVAFSPDEQLFLTG 408
D + +++DLR +E + D T+V+FS +L L G
Sbjct: 247 DATCRLFDLRADQELMTYSHD-NIICGITSVSFSKSGRLLLAG 288
Score = 36.2 bits (82), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 48/231 (20%), Positives = 91/231 (39%), Gaps = 31/231 (13%)
Query: 145 LKGHTKIVSALAVDHSGSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSW 204
L GHT +S +++++ S D T ++D + V +LS
Sbjct: 139 LAGHTGYLSCCRF-LDDNQIVTSSGDTTCALWDIETGQQTTTF-----TGHTGDVMSLSL 192
Query: 205 SPTSDRFLCVTGSAQAKIYD-RDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTK 263
+P + F+ A AK++D R+G+ F GH + + P
Sbjct: 193 APDTRLFVSGACDASAKLWDVREGMCRQTFT-------------GHESDINAICFFPN-G 238
Query: 264 ETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWDCDGKCIAGGIGDGSI 323
T S+D + R++D+ + + +T+ ++ G+ + G D +
Sbjct: 239 NAFATGSDDATCRLFDLRADQELMTYSHDNII----CGITSVSFSKSGRLLLAGYDDFNC 294
Query: 324 QVWN-LKPGWGSRPDIHVEKGHSDDITALKFSSDGRILLSRSFDGSLKVWD 373
VW+ LK V GH + ++ L + DG + + S+D LK+W+
Sbjct: 295 NVWDALKA-----DRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 64/283 (22%), Positives = 113/283 (39%), Gaps = 46/283 (16%)
Query: 136 QIPMSNEIVLKGHTKIVSALAVDHSGSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSE 195
+I M L+GH + A+ +LS S D + ++D N ++ + P
Sbjct: 42 RIQMRTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTN-KVHAI----PLR 96
Query: 196 GHQVRNLSWSPTSDRFLCVTGSAQAKIYD---RDGLTLGEFVKGDMYIRDLKNTKGHICG 252
V +++P+ + C IY+ R+G +R + GH
Sbjct: 97 SSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREG-----------NVRVSRELAGHTGY 145
Query: 253 LTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQK-------QVIKPKLARPGRVAVTTC 305
L+C + + I+TSS D + +WD+ + V+ LA R+ V+
Sbjct: 146 LSCCRFLDDNQ--IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVS-- 201
Query: 306 AWDCDGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHSDDITALKFSSDGRILLSRSF 365
G C D S ++W+++ G + GH DI A+ F +G + S
Sbjct: 202 -----GAC------DASAKLWDVREGMCRQT----FTGHESDINAICFFPNGNAFATGSD 246
Query: 366 DGSLKVWDLRKMKEPLKVFEDLPNNYAQTNVAFSPDEQLFLTG 408
D + +++DLR +E + D T+V+FS +L L G
Sbjct: 247 DATCRLFDLRADQELMTYSHD-NIICGITSVSFSKSGRLLLAG 288
Score = 36.2 bits (82), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 48/231 (20%), Positives = 91/231 (39%), Gaps = 31/231 (13%)
Query: 145 LKGHTKIVSALAVDHSGSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSW 204
L GHT +S +++++ S D T ++D + V +LS
Sbjct: 139 LAGHTGYLSCCRF-LDDNQIVTSSGDTTCALWDIETGQQTTTF-----TGHTGDVMSLSL 192
Query: 205 SPTSDRFLCVTGSAQAKIYD-RDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTK 263
+P + F+ A AK++D R+G+ F GH + + P
Sbjct: 193 APDTRLFVSGACDASAKLWDVREGMCRQTFT-------------GHESDINAICFFPN-G 238
Query: 264 ETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWDCDGKCIAGGIGDGSI 323
T S+D + R++D+ + + +T+ ++ G+ + G D +
Sbjct: 239 NAFATGSDDATCRLFDLRADQELMTYSHDNII----CGITSVSFSKSGRLLLAGYDDFNC 294
Query: 324 QVWN-LKPGWGSRPDIHVEKGHSDDITALKFSSDGRILLSRSFDGSLKVWD 373
VW+ LK V GH + ++ L + DG + + S+D LK+W+
Sbjct: 295 NVWDALKA-----DRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 64/128 (50%), Gaps = 12/128 (9%)
Query: 280 VNEFKSQKQVIKPKLARPGRVAVTTCAWDCDGKCIAGGIGDGSIQVWNLKPGWGSRPDIH 339
VN F + + L G+ + + A+ DGK +A G DG I ++++ G +H
Sbjct: 146 VNIFGVESGKKEYSLDTRGKF-ILSIAYSPDGKYLASGAIDGIINIFDIATG----KLLH 200
Query: 340 VEKGHSDDITALKFSSDGRILLSRSFDGSLKVWDLRKMKEPLKVFEDLPNNYAQ--TNVA 397
+GH+ I +L FS D ++L++ S DG +K++D++ + +A NVA
Sbjct: 201 TLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHAN-----LAGTLSGHASWVLNVA 255
Query: 398 FSPDEQLF 405
F PD+ F
Sbjct: 256 FCPDDTHF 263
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 56/123 (45%), Gaps = 11/123 (8%)
Query: 301 AVTTCAWDCDGK----CIAGGIGDGSIQVWNLKPGWGSRPDIHVE-KGHSDDITALKFSS 355
A+ + AW + K + G D ++VW + R D+ +GH + ++ S
Sbjct: 34 AIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRD---ERLDLQWSLEGHQLGVVSVDISH 90
Query: 356 DGRILLSRSFDGSLKVWDLRKMKEPLKVFEDLPNNYAQTNVAFSPDEQLFLTGTSVERES 415
I S S D +++WDL K+ +K + P + +AFSPD Q TGT V + +
Sbjct: 91 TLPIAASSSLDAHIRLWDLENGKQ-IKSIDAGPVD--AWTLAFSPDSQYLATGTHVGKVN 147
Query: 416 TTG 418
G
Sbjct: 148 IFG 150
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 63/144 (43%), Gaps = 11/144 (7%)
Query: 266 ILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWDCDGKCIAGGIGDGSIQV 325
I++ D +LR+W+V K + + A V+ + D I G D ++V
Sbjct: 124 IVSGGRDNALRVWNV---KGECMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVKV 180
Query: 326 WNLKPGWGSRPDIHVEKGHSDDITALKFSSDGRILLSRSFDGSLKVWDLRKMKEPLKVFE 385
W+L G + KGH++ +T++ S DG + S DG ++WDL K + ++
Sbjct: 181 WDLATG----RLVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARLWDLTKGEALSEMAA 236
Query: 386 DLPNNYAQTNVAFSPDEQLFLTGT 409
P N + FSP+ T
Sbjct: 237 GAPIN----QICFSPNRYWMCAAT 256
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 44/88 (50%), Gaps = 14/88 (15%)
Query: 332 WGSRPDIHVEK-----------GHSDDITALKFSSDGRILLSRSFDGSLKVWDLRKMKEP 380
WG PD H + GHS ++ + S++G +S S+D SL++W+L+ +
Sbjct: 43 WGPNPDRHSSECSYGLPDRRLEGHSAFVSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQ 102
Query: 381 LKVFEDLPNNYAQTNVAFSPDEQLFLTG 408
K L + +VAFSPD + ++G
Sbjct: 103 YKF---LGHTKDVLSVAFSPDNRQIVSG 127
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/196 (20%), Positives = 84/196 (42%), Gaps = 39/196 (19%)
Query: 145 LKGHTKIVSALAVDHSGSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGH--QVRNL 202
L+GH+ VS +A+ ++G+ +S S+D+++R+++ Q N + Q ++ L GH V ++
Sbjct: 63 LEGHSAFVSDVALSNNGNFAVSASWDHSLRLWNLQ--NGQCQ-YKFL----GHTKDVLSV 115
Query: 203 SWSPTSDRFLCVTGSAQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKT 262
++SP + + + ++++ G + +G H ++C + P
Sbjct: 116 AFSPDNRQIVSGGRDNALRVWNVKGECMHTLSRG-----------AHTDWVSCVRFSPSL 164
Query: 263 KE-TILTSSEDGSLRIWD------VNEFKSQKQVIKPKLARPGRVAVTTCAWDCDGKCIA 315
I++ D +++WD V + K + P DG A
Sbjct: 165 DAPVIVSGGWDNLVKVWDLATGRLVTDLKGHTNYVTSVTVSP------------DGSLCA 212
Query: 316 GGIGDGSIQVWNLKPG 331
DG ++W+L G
Sbjct: 213 SSDKDGVARLWDLTKG 228
Score = 29.3 bits (64), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 48/225 (21%), Positives = 82/225 (36%), Gaps = 60/225 (26%)
Query: 147 GHTKIVSALAVDHSGSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSP 206
GHTK V ++A +++SG D +R+++ +G S + V + +SP
Sbjct: 107 GHTKDVLSVAFSPDNRQIVSGGRDNALRVWNVKGECMHTLS----RGAHTDWVSCVRFSP 162
Query: 207 TSDRFLCVTGSAQ--AKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKE 264
+ D + V+G K++D L G V DLK ++ +T
Sbjct: 163 SLDAPVIVSGGWDNLVKVWD---LATGRLVT------DLKGHTNYVTSVTV----SPDGS 209
Query: 265 TILTSSEDGSLRIWDVNE-----------------------------------FKSQKQV 289
+S +DG R+WD+ + F + +
Sbjct: 210 LCASSDKDGVARLWDLTKGEALSEMAAGAPINQICFSPNRYWMCAATEKGIRIFDLENKD 269
Query: 290 IKPKLA---RPGRVAVTTC---AWDCDGKCIAGGIGDGSIQVWNL 328
I +LA + + V C AW DG + G D I+VW +
Sbjct: 270 IIVELAPEHQGSKKIVPECVSIAWSADGSTLYSGYTDNVIRVWGV 314
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 63/283 (22%), Positives = 113/283 (39%), Gaps = 46/283 (16%)
Query: 136 QIPMSNEIVLKGHTKIVSALAVDHSGSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSE 195
+I M L+GH + A+ ++S S D + ++D N ++ + P
Sbjct: 53 RIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTN-KVHAI----PLR 107
Query: 196 GHQVRNLSWSPTSDRFLCVTGSAQAKIYD---RDGLTLGEFVKGDMYIRDLKNTKGHICG 252
V +++P+ + C IY+ R+G +R + GH
Sbjct: 108 SSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREG-----------NVRVSRELAGHTGY 156
Query: 253 LTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQK-------QVIKPKLARPGRVAVTTC 305
L+C + + I+TSS D + +WD+ + V+ LA R+ V+
Sbjct: 157 LSCCRFLDDNQ--IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVS-- 212
Query: 306 AWDCDGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHSDDITALKFSSDGRILLSRSF 365
G C D S ++W+++ G + GH DI A+ F +G + S
Sbjct: 213 -----GAC------DASAKLWDVREGMCRQT----FTGHESDINAICFFPNGNAFATGSD 257
Query: 366 DGSLKVWDLRKMKEPLKVFEDLPNNYAQTNVAFSPDEQLFLTG 408
D + +++DLR +E + D T+V+FS +L L G
Sbjct: 258 DATCRLFDLRADQELMTYSHD-NIICGITSVSFSKSGRLLLAG 299
Score = 36.2 bits (82), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 48/231 (20%), Positives = 91/231 (39%), Gaps = 31/231 (13%)
Query: 145 LKGHTKIVSALAVDHSGSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSW 204
L GHT +S +++++ S D T ++D + V +LS
Sbjct: 150 LAGHTGYLSCCRF-LDDNQIVTSSGDTTCALWDIETGQQTTTF-----TGHTGDVMSLSL 203
Query: 205 SPTSDRFLCVTGSAQAKIYD-RDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTK 263
+P + F+ A AK++D R+G+ F GH + + P
Sbjct: 204 APDTRLFVSGACDASAKLWDVREGMCRQTFT-------------GHESDINAICFFPN-G 249
Query: 264 ETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWDCDGKCIAGGIGDGSI 323
T S+D + R++D+ + + +T+ ++ G+ + G D +
Sbjct: 250 NAFATGSDDATCRLFDLRADQELMTYSHDNII----CGITSVSFSKSGRLLLAGYDDFNC 305
Query: 324 QVWN-LKPGWGSRPDIHVEKGHSDDITALKFSSDGRILLSRSFDGSLKVWD 373
VW+ LK V GH + ++ L + DG + + S+D LK+W+
Sbjct: 306 NVWDALKA-----DRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 351
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 52/127 (40%), Gaps = 29/127 (22%)
Query: 260 PKTKETILTSSEDGSLRIWDVNE------FKSQKQVIKPKLARPGRVAVTTCAWDCDGKC 313
P T+ ++ + D S ++WDV E F + I P +G
Sbjct: 205 PDTR-LFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFP------------NGNA 251
Query: 314 IAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHSDDI----TALKFSSDGRILLSRSFDGSL 369
A G D + ++++L R D + D+I T++ FS GR+LL+ D +
Sbjct: 252 FATGSDDATCRLFDL------RADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNC 305
Query: 370 KVWDLRK 376
VWD K
Sbjct: 306 NVWDALK 312
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 63/283 (22%), Positives = 113/283 (39%), Gaps = 46/283 (16%)
Query: 136 QIPMSNEIVLKGHTKIVSALAVDHSGSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSE 195
+I M L+GH + A+ ++S S D + ++D N ++ + P
Sbjct: 42 RIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTN-KVHAI----PLR 96
Query: 196 GHQVRNLSWSPTSDRFLCVTGSAQAKIYD---RDGLTLGEFVKGDMYIRDLKNTKGHICG 252
V +++P+ + C IY+ R+G +R + GH
Sbjct: 97 SSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREG-----------NVRVSRELAGHTGY 145
Query: 253 LTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQK-------QVIKPKLARPGRVAVTTC 305
L+C + + I+TSS D + +WD+ + V+ LA R+ V+
Sbjct: 146 LSCCRFLDDNQ--IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVS-- 201
Query: 306 AWDCDGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHSDDITALKFSSDGRILLSRSF 365
G C D S ++W+++ G + GH DI A+ F +G + S
Sbjct: 202 -----GAC------DASAKLWDVREGMCRQT----FTGHESDINAICFFPNGNAFATGSD 246
Query: 366 DGSLKVWDLRKMKEPLKVFEDLPNNYAQTNVAFSPDEQLFLTG 408
D + +++DLR +E + D T+V+FS +L L G
Sbjct: 247 DATCRLFDLRADQELMTYSHD-NIICGITSVSFSKSGRLLLAG 288
Score = 36.2 bits (82), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 48/231 (20%), Positives = 91/231 (39%), Gaps = 31/231 (13%)
Query: 145 LKGHTKIVSALAVDHSGSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSW 204
L GHT +S +++++ S D T ++D + V +LS
Sbjct: 139 LAGHTGYLSCCRF-LDDNQIVTSSGDTTCALWDIETGQQTTTF-----TGHTGDVMSLSL 192
Query: 205 SPTSDRFLCVTGSAQAKIYD-RDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTK 263
+P + F+ A AK++D R+G+ F GH + + P
Sbjct: 193 APDTRLFVSGACDASAKLWDVREGMCRQTFT-------------GHESDINAICFFPN-G 238
Query: 264 ETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWDCDGKCIAGGIGDGSI 323
T S+D + R++D+ + + +T+ ++ G+ + G D +
Sbjct: 239 NAFATGSDDATCRLFDLRADQELMTYSHDNII----CGITSVSFSKSGRLLLAGYDDFNC 294
Query: 324 QVWN-LKPGWGSRPDIHVEKGHSDDITALKFSSDGRILLSRSFDGSLKVWD 373
VW+ LK V GH + ++ L + DG + + S+D LK+W+
Sbjct: 295 NVWDALKA-----DRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 52/127 (40%), Gaps = 29/127 (22%)
Query: 260 PKTKETILTSSEDGSLRIWDVNE------FKSQKQVIKPKLARPGRVAVTTCAWDCDGKC 313
P T+ ++ + D S ++WDV E F + I P +G
Sbjct: 194 PDTR-LFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFP------------NGNA 240
Query: 314 IAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHSDDI----TALKFSSDGRILLSRSFDGSL 369
A G D + ++++L R D + D+I T++ FS GR+LL+ D +
Sbjct: 241 FATGSDDATCRLFDL------RADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNC 294
Query: 370 KVWDLRK 376
VWD K
Sbjct: 295 NVWDALK 301
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 63/283 (22%), Positives = 113/283 (39%), Gaps = 46/283 (16%)
Query: 136 QIPMSNEIVLKGHTKIVSALAVDHSGSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSE 195
+I M L+GH + A+ ++S S D + ++D N ++ + P
Sbjct: 42 RIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTN-KVHAI----PLR 96
Query: 196 GHQVRNLSWSPTSDRFLCVTGSAQAKIYD---RDGLTLGEFVKGDMYIRDLKNTKGHICG 252
V +++P+ + C IY+ R+G +R + GH
Sbjct: 97 SSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREG-----------NVRVSRELAGHTGY 145
Query: 253 LTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQK-------QVIKPKLARPGRVAVTTC 305
L+C + + I+TSS D + +WD+ + V+ LA R+ V+
Sbjct: 146 LSCCRFLDDNQ--IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVS-- 201
Query: 306 AWDCDGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHSDDITALKFSSDGRILLSRSF 365
G C D S ++W+++ G + GH DI A+ F +G + S
Sbjct: 202 -----GAC------DASAKLWDVREGMCRQT----FTGHESDINAICFFPNGNAFATGSD 246
Query: 366 DGSLKVWDLRKMKEPLKVFEDLPNNYAQTNVAFSPDEQLFLTG 408
D + +++DLR +E + D T+V+FS +L L G
Sbjct: 247 DATCRLFDLRADQELMTYSHD-NIICGITSVSFSKSGRLLLAG 288
Score = 36.2 bits (82), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 48/231 (20%), Positives = 91/231 (39%), Gaps = 31/231 (13%)
Query: 145 LKGHTKIVSALAVDHSGSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSW 204
L GHT +S +++++ S D T ++D + V +LS
Sbjct: 139 LAGHTGYLSCCRF-LDDNQIVTSSGDTTCALWDIETGQQTTTF-----TGHTGDVMSLSL 192
Query: 205 SPTSDRFLCVTGSAQAKIYD-RDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTK 263
+P + F+ A AK++D R+G+ F GH + + P
Sbjct: 193 APDTRLFVSGACDASAKLWDVREGMCRQTFT-------------GHESDINAICFFPN-G 238
Query: 264 ETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWDCDGKCIAGGIGDGSI 323
T S+D + R++D+ + + +T+ ++ G+ + G D +
Sbjct: 239 NAFATGSDDATCRLFDLRADQELMTYSHDNII----CGITSVSFSKSGRLLLAGYDDFNC 294
Query: 324 QVWN-LKPGWGSRPDIHVEKGHSDDITALKFSSDGRILLSRSFDGSLKVWD 373
VW+ LK V GH + ++ L + DG + + S+D LK+W+
Sbjct: 295 NVWDALKA-----DRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 52/127 (40%), Gaps = 29/127 (22%)
Query: 260 PKTKETILTSSEDGSLRIWDVNE------FKSQKQVIKPKLARPGRVAVTTCAWDCDGKC 313
P T+ ++ + D S ++WDV E F + I P +G
Sbjct: 194 PDTR-LFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFP------------NGNA 240
Query: 314 IAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHSDDI----TALKFSSDGRILLSRSFDGSL 369
A G D + ++++L R D + D+I T++ FS GR+LL+ D +
Sbjct: 241 FATGSDDATCRLFDL------RADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNC 294
Query: 370 KVWDLRK 376
VWD K
Sbjct: 295 NVWDALK 301
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 59/235 (25%), Positives = 99/235 (42%), Gaps = 21/235 (8%)
Query: 144 VLKGHTKIVSALA-VDHSGSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNL 202
VL GH S+ V +R+++GS D T ++D R+ F PS GH L
Sbjct: 152 VLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVT-TGQRISIFGSEFPS-GHTADVL 209
Query: 203 SWSPTS---DRFLCVTGSAQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWH 259
S S S + F+ + +++D + R ++ GH + ++
Sbjct: 210 SLSINSLNANMFISGSCDTTVRLWDLR-----------ITSRAVRTYHGHEGDINSVKFF 258
Query: 260 PKTKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPGRV--AVTTCAWDCDGKCIAGG 317
P + T S+DG+ R++D+ Q QV + R VT+ A+ G+ + G
Sbjct: 259 PDGQR-FGTGSDDGTCRLFDMRT-GHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAG 316
Query: 318 IGDGSIQVWNLKPGWGSRPDIHVEKGHSDDITALKFSSDGRILLSRSFDGSLKVW 372
+G VW+ ++ H I+ L SSDG L + S+D +LK+W
Sbjct: 317 YSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIW 371
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 39/161 (24%), Positives = 73/161 (45%), Gaps = 13/161 (8%)
Query: 257 EWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPGRVA--VTTCAWDCDGKCI 314
++ P + ++T S D + +WDV Q+ I G A ++ +
Sbjct: 164 QYVPDQETRLITGSGDQTCVLWDVT--TGQRISIFGSEFPSGHTADVLSLSINSLNANMF 221
Query: 315 AGGIGDGSIQVWNLKPGWGSRPDIHVEKGHSDDITALKFSSDGRILLSRSFDGSLKVWDL 374
G D ++++W+L+ + + GH DI ++KF DG+ + S DG+ +++D+
Sbjct: 222 ISGSCDTTVRLWDLRI---TSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDM 278
Query: 375 RKMKEPLKVFEDLPNNYAQ-----TNVAFSPDEQLFLTGTS 410
R + L+V+ P+ T+VAFS +L G S
Sbjct: 279 RTGHQ-LQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYS 318
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 63/260 (24%), Positives = 101/260 (38%), Gaps = 74/260 (28%)
Query: 241 RDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPGRV 300
R L+ G + L +W P+ K I+++S+DG L +W N SQK KL P
Sbjct: 60 RTLQGHSGKVYSL---DWTPE-KNWIVSASQDGRLIVW--NALTSQK-THAIKLHCP--- 109
Query: 301 AVTTCAWDCDGKCIAGGIGDGSIQVWNLKPGW---GSRPDIHVEKGH------------- 344
V CA+ +G+ +A G D + ++NL G+ P V GH
Sbjct: 110 WVMECAFAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQ 169
Query: 345 -----------------------------------SDDITALKFSS-DGRILLSRSFDGS 368
+ D+ +L +S + + +S S D +
Sbjct: 170 ETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTT 229
Query: 369 LKVWDLRKMKEPLKVFEDLPNNYAQTNVAFSPDEQLFLT----GTSVERESTTGGLLCFY 424
+++WDLR ++ + + +V F PD Q F T GT + TG L Y
Sbjct: 230 VRLWDLRITSRAVRTYHGHEGDI--NSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVY 287
Query: 425 DRE------KLELVSRVGIS 438
+RE +L +V+ V S
Sbjct: 288 NREPDRNDNELPIVTSVAFS 307
Score = 30.0 bits (66), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 26/128 (20%), Positives = 61/128 (47%), Gaps = 14/128 (10%)
Query: 266 ILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWDCDGKCIAGGIGDGSIQV 325
++ S D ++R+WD+ + + ++ G + + + DG+ G DG+ ++
Sbjct: 221 FISGSCDTTVRLWDL---RITSRAVRTYHGHEGDI--NSVKFFPDGQRFGTGSDDGTCRL 275
Query: 326 WNLKPGWGSRPDIHVEKGHSDD-----ITALKFSSDGRILLSRSFDGSLKVWD--LRKMK 378
++++ G + ++ + +D +T++ FS GR+L + +G VWD L +M
Sbjct: 276 FDMRTG--HQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMV 333
Query: 379 EPLKVFED 386
L ++
Sbjct: 334 LNLGTLQN 341
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 52/243 (21%), Positives = 109/243 (44%), Gaps = 47/243 (19%)
Query: 144 VLKGHTKIVSALAVDHSGSRVLSGSYDYTVRMYDF---QGMNSRL---QSFRQLEPSEGH 197
+L GHT S L + + +++GS D TVR++D + +N+ + ++ L + G
Sbjct: 168 ILTGHTG--SVLCLQYDERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGM 225
Query: 198 QVRNLSWSPTSDRFLCVTGSAQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGE 257
V + + DR + V A D+ +R + GH + +
Sbjct: 226 MV-----TCSKDRSIAVWDMASPT---------------DITLR--RVLVGHRAAVNVVD 263
Query: 258 WHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWDCDGKCIAGG 317
+ K I+++S D ++++W+ + + + + G C D + + G
Sbjct: 264 FDDKY---IVSASGDRTIKVWNTSTCEFVRTL-------NGHKRGIACLQYRD-RLVVSG 312
Query: 318 IGDGSIQVWNLKPGWGSRPDIHVEKGHSDDITALKFSSDGRILLSRSFDGSLKVWDLRKM 377
D +I++W+++ G + V +GH + + ++F D + ++S ++DG +KVWDL
Sbjct: 313 SSDNTIRLWDIECG----ACLRVLEGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLVAA 366
Query: 378 KEP 380
+P
Sbjct: 367 LDP 369
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 60/137 (43%), Gaps = 19/137 (13%)
Query: 145 LKGHTKIVSALAVDHSGSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQ--VRNL 202
L GH + ++ L + V+SGS D T+R++D ++ L EGH+ VR +
Sbjct: 292 LNGHKRGIACL--QYRDRLVVSGSSDNTIRLWD-------IECGACLRVLEGHEELVRCI 342
Query: 203 SWSPTSDRFLCVTGSAQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKT 262
+ + R + + K++D G + +R L G + L E+
Sbjct: 343 RFD--NKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEFQ--- 397
Query: 263 KETILTSSEDGSLRIWD 279
I++SS D ++ IWD
Sbjct: 398 ---IVSSSHDDTILIWD 411
>pdb|2PM9|A Chain A, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 416
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 46/215 (21%), Positives = 88/215 (40%), Gaps = 18/215 (8%)
Query: 270 SEDGSLRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWDCDGKCIAGGIGDGSIQVWNLK 329
S D SL +W + S+K + ++ W + K IAG + +GS+++++
Sbjct: 42 STDSSLELWSLLAADSEKPIASLQVDSK----FNDLDWSHNNKIIAGALDNGSLELYSTN 97
Query: 330 PGWGSRPDIHVEKGHSDDITALKFSS-DGRILLSRSFDGSLKVWDLRKMKEPLKVFEDLP 388
+ + HS + +KF++ +L S +G + +WD+ K E + L
Sbjct: 98 EANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLT 157
Query: 389 NNYAQTNVAFSPDEQLFLTGTS----VERESTTGGLLCFYD-REKLELVSRVGISPACSV 443
+ ++V DE + L V + + +D + K E++ SP +
Sbjct: 158 PGQSMSSV----DEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGI 213
Query: 444 VQ----CAWHPKLNQIFATAGDKSQGGTHILYDPR 474
Q WHPK + ATA + +++D R
Sbjct: 214 KQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLR 248
Score = 33.5 bits (75), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 38/183 (20%), Positives = 65/183 (35%), Gaps = 26/183 (14%)
Query: 220 AKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWD 279
A D L L + + I + H + +++ K + + +G + IWD
Sbjct: 83 AGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWD 142
Query: 280 VN---EFKSQKQVIKPKLARPGRVAVTTCAWDCDGKCIAGGIGDGSI-QVWNLK------ 329
+N E S + P + V + AW+ + G + +W+LK
Sbjct: 143 MNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVI 202
Query: 330 ------PGWGSRPDIHVEKGHSDDIT--ALKFSSDGRILLSRSFDGSLKVWDLRKMKEPL 381
P G + + V + H + T A SD D S+ +WDLR PL
Sbjct: 203 HLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDN--------DPSILIWDLRNANTPL 254
Query: 382 KVF 384
+
Sbjct: 255 QTL 257
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 45/171 (26%), Positives = 80/171 (46%), Gaps = 49/171 (28%)
Query: 144 VLKGHTKIVSALAVDHSGSRVLSGSYDYTVRMYD---------FQGMNSRLQSF------ 188
VL GH + + V + G RV+SG+YD+ V+++D QG +R+ S
Sbjct: 234 VLMGH--VAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGIH 291
Query: 189 ----------RQLEPSEGHQVRNLS--WSPTS-----DRFLCVTGSAQA--KIYDRDGLT 229
R + G+ + L+ S TS D L V+G+A + KI+D
Sbjct: 292 VVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNIL-VSGNADSTVKIWD----- 345
Query: 230 LGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDV 280
+K ++ L+ H +TC +++ K ++TSS+DG++++WD+
Sbjct: 346 ----IKTGQCLQTLQGPNKHQSAVTCLQFN---KNFVITSSDDGTVKLWDL 389
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 60/125 (48%), Gaps = 15/125 (12%)
Query: 250 ICGLTCGEWHPKTKETILTS-SEDGSLRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWD 308
+ G T G W + ++ I+ S S D +L++W+ + + G + C
Sbjct: 155 LVGHTGGVWSSQMRDNIIISGSTDRTLKVWNAETGECIHTLY-------GHTSTVRCM-H 206
Query: 309 CDGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHSDDITALKFSSDGRILLSRSFDGS 368
K + G D +++VW+++ G +HV GH + +++ DGR ++S ++D
Sbjct: 207 LHEKRVVSGSRDATLRVWDIETG----QCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFM 260
Query: 369 LKVWD 373
+KVWD
Sbjct: 261 VKVWD 265
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 48/232 (20%), Positives = 93/232 (40%), Gaps = 37/232 (15%)
Query: 145 LKGHTKIVSALAVDHSGSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSW 204
L GHT V + + RV+SGS D T+R++D +++ + L GH
Sbjct: 195 LYGHTSTVRCMHLHEK--RVVSGSRDATLRVWD-------IETGQCLHVLMGHVAAVRCV 245
Query: 205 SPTSDRFLCVTGSAQAKIYDRDGLTLGEFVKGDM-YIRDLKNTKGHICGLTCGEWHPKTK 263
R + K++D + T ++G + L+ H+
Sbjct: 246 QYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGIHV------------- 292
Query: 264 ETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWDCDGKCIAGGIGDGSI 323
++ S D S+R+WDV + + G + + G D ++
Sbjct: 293 ---VSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGM--------ELKDNILVSGNADSTV 341
Query: 324 QVWNLKPGWGSRPDIHVEKGHSDDITALKFSSDGRILLSRSFDGSLKVWDLR 375
++W++K G + H +T L+F+ + +++ S DG++K+WDL+
Sbjct: 342 KIWDIKTG-QCLQTLQGPNKHQSAVTCLQFNKN--FVITSSDDGTVKLWDLK 390
>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1
pdb|1GXR|B Chain B, Wd40 Region Of Human Groucho/tle1
pdb|2CE8|A Chain A, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|B Chain B, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|C Chain C, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|D Chain D, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|A Chain A, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|B Chain B, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|C Chain C, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|D Chain D, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain
Length = 337
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 54/115 (46%), Gaps = 8/115 (6%)
Query: 265 TILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWDCDGKCIAGGIGDGSIQ 324
T++ E +L IWD+ + IK +L A A D K DG+I
Sbjct: 111 TLIVGGEASTLSIWDL---AAPTPRIKAELTSSAP-ACYALAISPDSKVCFSCCSDGNIA 166
Query: 325 VWNLKPGWGSRPDIHVEKGHSDDITALKFSSDGRILLSRSFDGSLKVWDLRKMKE 379
VW+L ++ + +GH+D + + S+DG L + D +++ WDLR+ ++
Sbjct: 167 VWDLH----NQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQ 217
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 35/66 (53%), Gaps = 8/66 (12%)
Query: 145 LKGHTKIVSALAVDHSGSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSE-GHQVRNLS 203
+GHT S + + + G+++ +G D TVR +D L+ RQL+ + Q+ +L
Sbjct: 179 FQGHTDGASCIDISNDGTKLWTGGLDNTVRSWD-------LREGRQLQQHDFTSQIFSLG 231
Query: 204 WSPTSD 209
+ PT +
Sbjct: 232 YCPTGE 237
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 31/144 (21%), Positives = 61/144 (42%), Gaps = 21/144 (14%)
Query: 236 GDMYIRDLKNT------KGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKS-QKQ 288
G++ + DL N +GH G +C + + T D ++R WD+ E + Q+
Sbjct: 163 GNIAVWDLHNQTLVRQFQGHTDGASCID-ISNDGTKLWTGGLDNTVRSWDLREGRQLQQH 221
Query: 289 VIKPKLARPGRVAVTTCAWDCDGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHSDDI 348
++ G G+ +A G+ +++V ++ ++PD + H +
Sbjct: 222 DFTSQIFSLGYCPT--------GEWLAVGMESSNVEVLHV-----NKPDKYQLHLHESCV 268
Query: 349 TALKFSSDGRILLSRSFDGSLKVW 372
+LKF+ G+ +S D L W
Sbjct: 269 LSLKFAYCGKWFVSTGKDNLLNAW 292
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 49/211 (23%), Positives = 90/211 (42%), Gaps = 25/211 (11%)
Query: 133 NRHQIPMSNEIVLKGHTKIVSALAVDHSGSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLE 192
N+ I + +V++ HT V G R+ S D T++++ + ++ +L
Sbjct: 605 NKKNITNLSRLVVRPHTDAVYHACFSEDGQRIASCGADKTLQVF-------KAETGEKLL 657
Query: 193 PSEGHQVRNLSWS-PTSDRFLCVTGSAQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHIC 251
+ H+ L + T DRF+ T S K+ + +T GE V + D + + + C
Sbjct: 658 EIKAHEDEVLCCAFSTDDRFI-ATCSVDKKVKIWNSMT-GELV----HTYDEHSEQVNCC 711
Query: 252 GLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWDCDG 311
T H + T S D L++WD+N QK+ +V C + D
Sbjct: 712 HFTNSSHHL----LLATGSSDCFLKLWDLN----QKECRNTMFGHTN--SVNHCRFSPDD 761
Query: 312 KCIAGGIGDGSIQVWNLKPGWGSRPDIHVEK 342
K +A DG++++W+ R I+V++
Sbjct: 762 KLLASCSADGTLKLWDATSA-NERKSINVKQ 791
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 67/322 (20%), Positives = 115/322 (35%), Gaps = 70/322 (21%)
Query: 145 LKGHTKIVSALAVDHSGSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSW 204
+K H V A + + S D V+++ NS QV +
Sbjct: 659 IKAHEDEVLCCAFSTDDRFIATCSVDKKVKIW-----NSMTGELVHTYDEHSEQVNCCHF 713
Query: 205 SPTSDRFLCVTGSAQAKIYDRDGLTLGEFVK-GDMYIRDLKNTK-GHICGLTCGEWHPKT 262
+ +S L TGS+ F+K D+ ++ +NT GH + + P
Sbjct: 714 TNSSHHLLLATGSSDC------------FLKLWDLNQKECRNTMFGHTNSVNHCRFSPDD 761
Query: 263 KETILTSSEDGSLRIWDVNEFKSQKQV----IKPKLARPG---RVAVTTCAWDCDGKCI- 314
K + + S DG+L++WD +K + L P V V C+W DG I
Sbjct: 762 K-LLASCSADGTLKLWDATSANERKSINVKQFFLNLEDPQEDMEVIVKCCSWSADGARIM 820
Query: 315 --------------AGGIGD------GSIQVWNLKPG---------------WG--SRPD 337
+G +G+ +IQ + P W SR
Sbjct: 821 VAAKNKIFLFDIHTSGLLGEIHTGHHSTIQYCDFSPQNHLAVVALSQYCVELWNTDSRSK 880
Query: 338 IHVEKGHSDDITALKFSSDGRILLSRSFDGSLKVWDLRKMKEPLKVFEDLPNNYAQTNVA 397
+ +GH + + FS DG L+ S D ++++W+ +K+ + V + +V
Sbjct: 881 VADCRGHLSWVHGVMFSPDGSSFLTSSDDQTIRLWETKKVCKNSAVMLK-----QEVDVV 935
Query: 398 FSPDEQLFLTGTSVERESTTGG 419
F +E + L + R G
Sbjct: 936 FQENEVMVLAVDHIRRLQLING 957
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 51/117 (43%), Gaps = 5/117 (4%)
Query: 294 LARPGRVAVTTCAWDCDGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHSDDITALKF 353
+ RP AV + DG+ IA D ++QV+ + G + K H D++ F
Sbjct: 616 VVRPHTDAVYHACFSEDGQRIASCGADKTLQVFKAETG----EKLLEIKAHEDEVLCCAF 671
Query: 354 SSDGRILLSRSFDGSLKVWDLRKMKEPLKVFEDLPNNYAQTNVAFSPDEQLFLTGTS 410
S+D R + + S D +K+W+ E + +++ + S L TG+S
Sbjct: 672 STDDRFIATCSVDKKVKIWN-SMTGELVHTYDEHSEQVNCCHFTNSSHHLLLATGSS 727
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 31/151 (20%), Positives = 66/151 (43%), Gaps = 21/151 (13%)
Query: 266 ILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWDCDGKCIAGGIGDGSIQV 325
+L+ S DG++++W++ +K + G V +C D + D + ++
Sbjct: 1064 LLSWSFDGTVKVWNIITGNKEKDFV----CHQG--TVLSCDISHDATKFSSTSADKTAKI 1117
Query: 326 WN---LKPGWGSRPDIHVEKGHSDDITALKFSSDGRILLSRSFDGSLKVWD-----LRKM 377
W+ L P +H +GH+ + FS D +L + +G +++W+ L +
Sbjct: 1118 WSFDLLLP-------LHELRGHNGCVRCSAFSVDSTLLATGDDNGEIRIWNVSNGELLHL 1170
Query: 378 KEPLKVFEDLPNNYAQTNVAFSPDEQLFLTG 408
PL + T++ FSPD ++ ++
Sbjct: 1171 CAPLSEEGAATHGGWVTDLCFSPDGKMLISA 1201
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 37/160 (23%), Positives = 66/160 (41%), Gaps = 30/160 (18%)
Query: 258 WHPKT---KETILTSSEDGSLRIWDVNEFKS------QKQVIKPKLARPGRVAVTTCAWD 308
WH + ++T+++SS+D +++W+ K Q+ V +L + R+ +W
Sbjct: 1013 WHIQFTADEKTLISSSDDAEIQVWNWQLDKCIFLRGHQETVKDFRLLKNSRLL----SWS 1068
Query: 309 CDGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHSDDITALKFSSDGRILLSRSFDGS 368
DG+++VWN+ G + + H + + S D S S D +
Sbjct: 1069 ----------FDGTVKVWNIITGNKEKDFV----CHQGTVLSCDISHDATKFSSTSADKT 1114
Query: 369 LKVWDLRKMKEPLKVFEDLPNNYAQTNVAFSPDEQLFLTG 408
K+W + L + E +N AFS D L TG
Sbjct: 1115 AKIWSFDLL---LPLHELRGHNGCVRCSAFSVDSTLLATG 1151
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 48/211 (22%), Positives = 92/211 (43%), Gaps = 25/211 (11%)
Query: 133 NRHQIPMSNEIVLKGHTKIVSALAVDHSGSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLE 192
N+ I + +V++ HT V G R+ S D T++++ + ++ +L
Sbjct: 606 NKKTIKNLSRLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVF-------KAETGEKLL 658
Query: 193 PSEGHQVRNLSWSPTSDRFLCVTGSAQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICG 252
+ H+ L + +SD T SA K+ D T G+ V + D + + + C
Sbjct: 659 DIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSAT-GKLV----HTYDEHSEQVNCCH 713
Query: 253 LTCGEWHPKTKETIL-TSSEDGSLRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWDCDG 311
T K+ +L T S D L++WD+N QK+ +V C + D
Sbjct: 714 FT-----NKSNHLLLATGSNDFFLKLWDLN----QKECRNTMFGHTN--SVNHCRFSPDD 762
Query: 312 KCIAGGIGDGSIQVWNLKPGWGSRPDIHVEK 342
+ +A DG++++W+++ R I+V++
Sbjct: 763 ELLASCSADGTLRLWDVRSA-NERKSINVKR 792
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 52/111 (46%), Gaps = 12/111 (10%)
Query: 264 ETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWDCDGKCIAGGIGDGSI 323
E + EDG+++I ++ +V + + AV + DGK + D I
Sbjct: 981 EYVAFGDEDGAIKIIEL----PNNRVFSSGVGH--KKAVRHIQFTADGKTLISSSEDSVI 1034
Query: 324 QVWNLKPGWGSRPDIHVEKGHSDDITALKFSSDGRILLSRSFDGSLKVWDL 374
QVWN + G D + H + + + D R LLS SFDG++KVW++
Sbjct: 1035 QVWNWQTG-----DYVFLQAHQETVKDFRLLQDSR-LLSWSFDGTVKVWNV 1079
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 62/274 (22%), Positives = 102/274 (37%), Gaps = 34/274 (12%)
Query: 145 LKGHTKIVSALAVDHSGSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSW 204
+K H V A S + + S D V+++D S QV +
Sbjct: 660 IKAHEDEVLCCAFSSDDSYIATCSADKKVKIWD-----SATGKLVHTYDEHSEQVNCCHF 714
Query: 205 SPTSDRFLCVTGSAQAKIYDRDGLTLGEFVK-GDMYIRDLKNTK-GHICGLTCGEWHPKT 262
+ S+ L TGS F+K D+ ++ +NT GH + + P
Sbjct: 715 TNKSNHLLLATGSNDF------------FLKLWDLNQKECRNTMFGHTNSVNHCRFSPD- 761
Query: 263 KETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPG-------RVAVTTCAWDCDGKCIA 315
E + + S DG+LR+WDV +K + + V V C+W DG I
Sbjct: 762 DELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKII 821
Query: 316 GGIGDGSIQVWNLKPGWGSRPDIHVEKGHSDDITALKFSSDGRILLSRSFDGSLKVWDLR 375
+ ++++ G +IH GH I FS + + +++W++
Sbjct: 822 VA-AKNKVLLFDIHTS-GLLAEIHT--GHHSTIQYCDFSPYDHLAVIALSQYCVELWNI- 876
Query: 376 KMKEPLKVFEDLPNNYAQTNVAFSPDEQLFLTGT 409
LKV + + V FSPD FLT +
Sbjct: 877 --DSRLKVADCRGHLSWVHGVMFSPDGSSFLTAS 908
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/155 (23%), Positives = 68/155 (43%), Gaps = 28/155 (18%)
Query: 266 ILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPGRV---AVTTCAWDCDGKCIAGGIGDGS 322
+L+ S DG++++W+V I ++ R V +CA D + D +
Sbjct: 1065 LLSWSFDGTVKVWNV---------ITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKT 1115
Query: 323 IQVWN---LKPGWGSRPDIHVEKGHSDDITALKFSSDGRILLSRSFDGSLKVWD-----L 374
++W+ L P +H KGH+ + FS DG +L + +G +++W+ L
Sbjct: 1116 AKIWSFDLLSP-------LHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQL 1168
Query: 375 RKMKEPLKVFEDLPNNYAQ-TNVAFSPDEQLFLTG 408
P+ V E + T+V FSPD + ++
Sbjct: 1169 LHSCAPISVEEGTATHGGWVTDVCFSPDSKTLVSA 1203
Score = 38.1 bits (87), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 39/80 (48%), Gaps = 4/80 (5%)
Query: 294 LARPGRVAVTTCAWDCDGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHSDDITALKF 353
+ RP AV + DG+ IA D ++QV+ + G DI K H D++ F
Sbjct: 617 VVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETG-EKLLDI---KAHEDEVLCCAF 672
Query: 354 SSDGRILLSRSFDGSLKVWD 373
SSD + + S D +K+WD
Sbjct: 673 SSDDSYIATCSADKKVKIWD 692
Score = 33.1 bits (74), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 31/143 (21%), Positives = 63/143 (44%), Gaps = 41/143 (28%)
Query: 265 TILTSSEDGSLRIWDVNEF-KSQKQVIKPKL------------------------ARPGR 299
+ LT+S+D ++R+W+ + K+ V+K ++ + G+
Sbjct: 903 SFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQ 962
Query: 300 V------AVTTCAWDCDGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEK---GHSDDITA 350
+ V+ C + +A G DG+I++ L P+ V GH +
Sbjct: 963 IDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIEL-------PNNRVFSSGVGHKKAVRH 1015
Query: 351 LKFSSDGRILLSRSFDGSLKVWD 373
++F++DG+ L+S S D ++VW+
Sbjct: 1016 IQFTADGKTLISSSEDSVIQVWN 1038
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 59/269 (21%), Positives = 102/269 (37%), Gaps = 70/269 (26%)
Query: 145 LKGHTKIVSALAVDHSGSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQ--VRNL 202
L GH VS LA+ +S S+D T+R++D L++ + GHQ V ++
Sbjct: 72 LTGHNHFVSDLALSQENCFAISSSWDKTLRLWD-------LRTGTTYKRFVGHQSEVYSV 124
Query: 203 SWSPTSDRFLCVTGSAQAKIYDRDGLTLGE--FVKGDMYIRDLKNTKGHICGLTCGEWHP 260
++SP + + L + K+++ LGE F + + H ++C + P
Sbjct: 125 AFSPDNRQILSAGAEREIKLWN----ILGECKFSSAE--------KENHSDWVSCVRYSP 172
Query: 261 KTKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWDCDGKCIAGGIGD 320
K ++ Q P A G W D
Sbjct: 173 IMKSA-------------------NKVQPFAPYFASVG--------W------------D 193
Query: 321 GSIQVWNLKPGWGSRPDIHVEKGHSDDITALKFSSDGRILLSRSFDGSLKVWDLRKMKEP 380
G ++VWN + + K H ++ L S +G+ + + D L +WD+ + P
Sbjct: 194 GRLKVWNT-----NFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYP 248
Query: 381 LKVFEDLPNNYAQTNVAFSPDEQLFLTGT 409
+ F D + Q +AF+P Q GT
Sbjct: 249 QREF-DAGSTINQ--IAFNPKLQWVAVGT 274
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 52/116 (44%), Gaps = 9/116 (7%)
Query: 310 DGKCIAGGIGDGSIQVWNL----KPGWGSRPDIHVEKGHSDDITALKFSSDGRILLSRSF 365
D + G D ++ +W L + G+ P + GH+ ++ L S + +S S+
Sbjct: 38 DSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKAL-TGHNHFVSDLALSQENCFAISSSW 96
Query: 366 DGSLKVWDLRKMKEPLKVFEDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLL 421
D +L++WDLR + Y+ VAFSPD + L+ ERE +L
Sbjct: 97 DKTLRLWDLRTGTTYKRFVGHQSEVYS---VAFSPDNRQILSA-GAEREIKLWNIL 148
Score = 34.3 bits (77), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 24/111 (21%), Positives = 50/111 (45%), Gaps = 5/111 (4%)
Query: 265 TILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWDCDGKCIA-GGIGDGSI 323
+++ S D ++ IW + E + P A G + C A D ++
Sbjct: 41 VLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWDKTL 100
Query: 324 QVWNLKPGWGSRPDIHVEKGHSDDITALKFSSDGRILLSRSFDGSLKVWDL 374
++W+L+ G + + GH ++ ++ FS D R +LS + +K+W++
Sbjct: 101 RLWDLRTGTTYKRFV----GHQSEVYSVAFSPDNRQILSAGAEREIKLWNI 147
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 48/211 (22%), Positives = 92/211 (43%), Gaps = 25/211 (11%)
Query: 133 NRHQIPMSNEIVLKGHTKIVSALAVDHSGSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLE 192
N+ I + +V++ HT V G R+ S D T++++ + ++ +L
Sbjct: 599 NKKTIKNLSRLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVF-------KAETGEKLL 651
Query: 193 PSEGHQVRNLSWSPTSDRFLCVTGSAQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICG 252
+ H+ L + +SD T SA K+ D T G+ V + D + + + C
Sbjct: 652 DIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSAT-GKLV----HTYDEHSEQVNCCH 706
Query: 253 LTCGEWHPKTKETIL-TSSEDGSLRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWDCDG 311
T K+ +L T S D L++WD+N QK+ +V C + D
Sbjct: 707 FT-----NKSNHLLLATGSNDFFLKLWDLN----QKECRNTMFGHTN--SVNHCRFSPDD 755
Query: 312 KCIAGGIGDGSIQVWNLKPGWGSRPDIHVEK 342
+ +A DG++++W+++ R I+V++
Sbjct: 756 ELLASCSADGTLRLWDVRSA-NERKSINVKR 785
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 52/111 (46%), Gaps = 12/111 (10%)
Query: 264 ETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWDCDGKCIAGGIGDGSI 323
E + EDG+++I ++ +V + + AV + DGK + D I
Sbjct: 974 EYVAFGDEDGAIKIIEL----PNNRVFSSGVGH--KKAVRHIQFTADGKTLISSSEDSVI 1027
Query: 324 QVWNLKPGWGSRPDIHVEKGHSDDITALKFSSDGRILLSRSFDGSLKVWDL 374
QVWN + G D + H + + + D R LLS SFDG++KVW++
Sbjct: 1028 QVWNWQTG-----DYVFLQAHQETVKDFRLLQDSR-LLSWSFDGTVKVWNV 1072
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 64/274 (23%), Positives = 107/274 (39%), Gaps = 34/274 (12%)
Query: 145 LKGHTKIVSALAVDHSGSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSW 204
+K H V A S + + S D V+++D + ++ E SE QV +
Sbjct: 653 IKAHEDEVLCCAFSSDDSYIATCSADKKVKIWD-SATGKLVHTYD--EHSE--QVNCCHF 707
Query: 205 SPTSDRFLCVTGSAQAKIYDRDGLTLGEFVK-GDMYIRDLKNTK-GHICGLTCGEWHPKT 262
+ S+ L TGS F+K D+ ++ +NT GH + + P
Sbjct: 708 TNKSNHLLLATGSNDF------------FLKLWDLNQKECRNTMFGHTNSVNHCRFSPD- 754
Query: 263 KETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPG-------RVAVTTCAWDCDGKCIA 315
E + + S DG+LR+WDV +K + + V V C+W DG I
Sbjct: 755 DELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKII 814
Query: 316 GGIGDGSIQVWNLKPGWGSRPDIHVEKGHSDDITALKFSSDGRILLSRSFDGSLKVWDLR 375
+ ++++ G +IH GH I FS + + +++W++
Sbjct: 815 VA-AKNKVLLFDIHTS-GLLAEIHT--GHHSTIQYCDFSPYDHLAVIALSQYCVELWNI- 869
Query: 376 KMKEPLKVFEDLPNNYAQTNVAFSPDEQLFLTGT 409
LKV + + V FSPD FLT +
Sbjct: 870 --DSRLKVADCRGHLSWVHGVMFSPDGSSFLTAS 901
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/155 (23%), Positives = 68/155 (43%), Gaps = 28/155 (18%)
Query: 266 ILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPGRV---AVTTCAWDCDGKCIAGGIGDGS 322
+L+ S DG++++W+V I ++ R V +CA D + D +
Sbjct: 1058 LLSWSFDGTVKVWNV---------ITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKT 1108
Query: 323 IQVWN---LKPGWGSRPDIHVEKGHSDDITALKFSSDGRILLSRSFDGSLKVWD-----L 374
++W+ L P +H KGH+ + FS DG +L + +G +++W+ L
Sbjct: 1109 AKIWSFDLLSP-------LHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQL 1161
Query: 375 RKMKEPLKVFEDLPNNYAQ-TNVAFSPDEQLFLTG 408
P+ V E + T+V FSPD + ++
Sbjct: 1162 LHSCAPISVEEGTATHGGWVTDVCFSPDSKTLVSA 1196
Score = 38.1 bits (87), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 39/80 (48%), Gaps = 4/80 (5%)
Query: 294 LARPGRVAVTTCAWDCDGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHSDDITALKF 353
+ RP AV + DG+ IA D ++QV+ + G DI K H D++ F
Sbjct: 610 VVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETG-EKLLDI---KAHEDEVLCCAF 665
Query: 354 SSDGRILLSRSFDGSLKVWD 373
SSD + + S D +K+WD
Sbjct: 666 SSDDSYIATCSADKKVKIWD 685
Score = 33.1 bits (74), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 31/143 (21%), Positives = 63/143 (44%), Gaps = 41/143 (28%)
Query: 265 TILTSSEDGSLRIWDVNEF-KSQKQVIKPKL------------------------ARPGR 299
+ LT+S+D ++R+W+ + K+ V+K ++ + G+
Sbjct: 896 SFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQ 955
Query: 300 V------AVTTCAWDCDGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEK---GHSDDITA 350
+ V+ C + +A G DG+I++ L P+ V GH +
Sbjct: 956 IDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIEL-------PNNRVFSSGVGHKKAVRH 1008
Query: 351 LKFSSDGRILLSRSFDGSLKVWD 373
++F++DG+ L+S S D ++VW+
Sbjct: 1009 IQFTADGKTLISSSEDSVIQVWN 1031
>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex
Length = 408
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 34/135 (25%), Positives = 61/135 (45%), Gaps = 19/135 (14%)
Query: 257 EWHPKTKETILTSSEDGSLRIWDVNEFKSQ-----KQVIKPKLARPGRVAVTTCAWDCDG 311
+W+P +SS D +L++WD N ++ ++ + P V+ C
Sbjct: 106 QWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSP--VSTKHCL----- 158
Query: 312 KCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHSDDITALKFS-SDGRILLSRSFDGSLK 370
+A G +Q+ +LK G S H+ +GH +I A+ +S IL + S D +K
Sbjct: 159 --VAVGTRGPKVQLCDLKSGSCS----HILQGHRQEILAVSWSPRYDYILATASADSRVK 212
Query: 371 VWDLRKMKEPLKVFE 385
+WD+R+ L +
Sbjct: 213 LWDVRRASGCLITLD 227
Score = 29.6 bits (65), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 66/173 (38%), Gaps = 24/173 (13%)
Query: 335 RPDIH---VEKGHSDDITALKFSSDGRILLSRSFDGSLKVWDLRKMKEPLKVFEDLPNNY 391
PD+H VE T + D + S SFD +LKVWD ++ VF Y
Sbjct: 94 HPDVHRYSVE-------TVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTA-DVFNFEETVY 145
Query: 392 AQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREKLELVSRVGISPACSVVQCAWHPK 451
+ S L GT + LC K S + ++ +W P+
Sbjct: 146 SHHMSPVSTKHCLVAVGTRGPKVQ-----LC---DLKSGSCSHILQGHRQEILAVSWSPR 197
Query: 452 LNQIFATAGDKSQGGTHILYDPRLSERGALVCVARAPRKKSVDDFEVAPVIHN 504
+ I ATA S+ L+D R + G L+ + + KKS E A HN
Sbjct: 198 YDYILATASADSRVK---LWDVRRAS-GCLITLDQHNGKKS-QAVESANTAHN 245
>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|D Chain D, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|G Chain G, Crystal Structure Of Mitotic Checkpoint Complex
Length = 401
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 65/266 (24%), Positives = 105/266 (39%), Gaps = 36/266 (13%)
Query: 152 VSALAVDHSGSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVR--NLSWSPTSD 209
V+++ H GS + G + V +YD ++S +L GHQ R LSW +
Sbjct: 137 VASVKWSHDGSFLSVGLGNGLVDIYD-------VESQTKLRTMAGHQARVGCLSW----N 185
Query: 210 RFLCVTGSAQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTS 269
R + +GS I+ D + I L+ +CGL W + + +
Sbjct: 186 RHVLSSGSRSGAIHHHD------VRIANHQIGTLQGHSSEVCGLA---WRSDGLQ-LASG 235
Query: 270 SEDGSLRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWDCDGKCIAGGIGDGSIQVWNLK 329
D ++IWD +S AV C W + GG D I WN
Sbjct: 236 GNDNVVQIWDA---RSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAA 292
Query: 330 PGWGSRPDIHVEKGHSDDITALKFSSDGR-ILLSRSF-DGSLKVWDLRKMKEPLKVFEDL 387
G+R + V+ G +T+L +S + I+ + F D +L +W +V D+
Sbjct: 293 T--GARVNT-VDAG--SQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQV--DI 345
Query: 388 PNNYAQT-NVAFSPDEQLFLTGTSVE 412
P + + A SPD ++ T S E
Sbjct: 346 PAHDTRVLYSALSPDGRILSTAASDE 371
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 54/220 (24%), Positives = 88/220 (40%), Gaps = 22/220 (10%)
Query: 133 NRHQIPMSNEIV--LKGHTKIVSALAVDHSGSRVLSGSYDYTVRMYDFQGMNSRLQSFRQ 190
+ H + ++N + L+GH+ V LA G ++ SG D V+++D + S + F +
Sbjct: 199 HHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDAR---SSIPKFTK 255
Query: 191 LEPSEGHQVRNLSWSPTSDRFLCVTGSAQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHI 250
+ V+ ++W P L G K G V NT
Sbjct: 256 TNHNAA--VKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARV----------NTVDAG 303
Query: 251 CGLTCGEWHPKTKETILTSS-EDGSLRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWDC 309
+T W P +KE + T D +L IW + KQV P A RV + A
Sbjct: 304 SQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIP--AHDTRVLYS--ALSP 359
Query: 310 DGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHSDDIT 349
DG+ ++ D +++ W + G + I + K S IT
Sbjct: 360 DGRILSTAASDENLKFWRVYDGDHVKRPIPITKTPSSSIT 399
Score = 36.6 bits (83), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 44/197 (22%), Positives = 73/197 (37%), Gaps = 48/197 (24%)
Query: 302 VTTCAWDCDGKCIAGGIGDGSIQVWNLKP-----------------GW-------GSRP- 336
V + W DG ++ G+G+G + +++++ W GSR
Sbjct: 137 VASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSWNRHVLSSGSRSG 196
Query: 337 -----DIHVE-------KGHSDDITALKFSSDGRILLSRSFDGSLKVWDLRKMKEPLKVF 384
D+ + +GHS ++ L + SDG L S D +++WD R + F
Sbjct: 197 AIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDAR---SSIPKF 253
Query: 385 EDLPNNYAQTNVAFSP-DEQLFLTGTSVERESTTGGLLCFYDREKLELVSRVGISPACSV 443
+N A VA+ P L TG T + F++ V+ V V
Sbjct: 254 TKTNHNAAVKAVAWCPWQSNLLATG-----GGTMDKQIHFWNAATGARVNTV--DAGSQV 306
Query: 444 VQCAWHPKLNQIFATAG 460
W P +I +T G
Sbjct: 307 TSLIWSPHSKEIMSTHG 323
Score = 32.7 bits (73), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 30/138 (21%), Positives = 50/138 (36%), Gaps = 20/138 (14%)
Query: 192 EPSEGHQVRNLSWSPTSDRFLCVTGSAQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHIC 251
E E V ++ WS G+ IYD + T L+ GH
Sbjct: 130 ETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQT------------KLRTMAGHQA 177
Query: 252 GLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWDCDG 311
+ C W+ + + + S G++ DV Q ++ + V AW DG
Sbjct: 178 RVGCLSWN---RHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSE-----VCGLAWRSDG 229
Query: 312 KCIAGGIGDGSIQVWNLK 329
+A G D +Q+W+ +
Sbjct: 230 LQLASGGNDNVVQIWDAR 247
>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
Length = 425
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 58/117 (49%), Gaps = 11/117 (9%)
Query: 262 TKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWDCDGKCIAGGIGDG 321
T + +L++S+DG+LRIW SQ ++ + +W D K I+ + DG
Sbjct: 258 TNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQ------SIVSASWVGDDKVISCSM-DG 310
Query: 322 SIQVWNLKPGWGSRPDIHVEKGHSDDITALKFSSDGRILLSRSFDGSLKVWDLRKMK 378
S+++W+LK + + + G I A + S DG+ DG + V+DL+K+
Sbjct: 311 SVRLWSLKQ--NTLLALSIVDGVP--IFAGRISQDGQKYAVAFMDGQVNVYDLKKLN 363
Score = 36.6 bits (83), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 38/73 (52%), Gaps = 5/73 (6%)
Query: 302 VTTCAWDCDGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHSDDITALKFSSDGRILL 361
VT AW DG I G+ +G +++WN K G ++V H I ++K++ DG ++
Sbjct: 111 VTCLAWSHDGNSIVTGVENGELRLWN-KTG----ALLNVLNFHRAPIVSVKWNKDGTHII 165
Query: 362 SRSFDGSLKVWDL 374
S + +W++
Sbjct: 166 SMDVENVTILWNV 178
Score = 32.3 bits (72), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 21/30 (70%)
Query: 343 GHSDDITALKFSSDGRILLSRSFDGSLKVW 372
GH I+ L+F+ ++LLS S DG+L++W
Sbjct: 245 GHHGPISVLEFNDTNKLLLSASDDGTLRIW 274
>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1
Length = 402
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 50/235 (21%), Positives = 93/235 (39%), Gaps = 49/235 (20%)
Query: 196 GHQ--VRNLSWSPTSDRFLCVTGSAQAKIYDRDGLTLGEFVKGDMYI---RDLKNTKGHI 250
GH V +++W P +D + +GS + + E G + + + +GH
Sbjct: 79 GHTAPVLDIAWXPHNDNVIA-SGSEDCTV------MVWEIPDGGLVLPLREPVITLEGHT 131
Query: 251 CGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQV---IKPKLARPGRVAVTTCAW 307
+ WHP + +L++ D + +WDV + + + P + + W
Sbjct: 132 KRVGIVAWHPTAQNVLLSAGXDNVILVWDVGTGAAVLTLGPDVHPD-------TIYSVDW 184
Query: 308 DCDGKCIAGGIGD----------GSIQVWNLKPGWGSRPDIHVEKGHSDDITALKFSSDG 357
DG I D G++ +P G+RP +H F S+G
Sbjct: 185 SRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRP-VHA-----------VFVSEG 232
Query: 358 RIL---LSRSFDGSLKVWDLRKMKEPLKVFEDLPNNYAQTNVAFSPDEQL-FLTG 408
+IL SR + + +WD + ++EPL + ++L + F PD + +L G
Sbjct: 233 KILTTGFSRMSERQVALWDTKHLEEPLSL-QELDTSSGVLLPFFDPDTNIVYLCG 286
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 67/295 (22%), Positives = 120/295 (40%), Gaps = 64/295 (21%)
Query: 140 SNEIV-----LKGHTKIVSALAVDHSG-SRVLSGSYDYTVRMYDFQGMNSR----LQSFR 189
SNE++ L+GH V++LA + +LS S D T+ + G + + ++SF+
Sbjct: 3 SNEVLVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFK 62
Query: 190 QLEPSEGHQVRNLSWSPTSDRFLCVTGSAQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGH 249
H V++ + T+D ++ S +D+ L L + G+ Y R + GH
Sbjct: 63 ----GHSHIVQDCT--LTADGAYALSAS-----WDKT-LRLWDVATGETYQRFV----GH 106
Query: 250 ICGLTCGEWHPKTKETILTSSEDGSLRIWDV-----------NEFKSQKQVIKPKLARPG 298
+ + K I++ S D ++++W + N++ SQ +V+ + A
Sbjct: 107 KSDVXSVD-IDKKASXIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKA--- 162
Query: 299 RVAVTTCAWDCDGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEK---GHSDDITALKFSS 355
D D I D ++ WNL +E GH+ +I L S
Sbjct: 163 ---------DDDSVTIISAGNDKXVKAWNLNQ-------FQIEADFIGHNSNINTLTASP 206
Query: 356 DGRILLSRSFDGSLKVWDLRKMKEPLKVFEDLPNNYAQTNVAFSPDEQLFLTGTS 410
DG ++ S DG + +W+L K L ++AFSP+ T+
Sbjct: 207 DGTLIASAGKDGEIXLWNLAAKKAXYT----LSAQDEVFSLAFSPNRYWLAAATA 257
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 51/190 (26%), Positives = 84/190 (44%), Gaps = 34/190 (17%)
Query: 144 VLKGHTKIVSALAVDHSGSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLS 203
VL+GH + S V G+ V+SGSYD T+ ++D M + L GH R S
Sbjct: 265 VLRGH--MASVRTVSGHGNIVVSGSYDNTLIVWDVAQM-------KCLYILSGHTDRIYS 315
Query: 204 WSPTSDRFLCVTGSAQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGH--ICGLTCGEWHPK 261
+R C++ S I D L GE MY +GH + GL
Sbjct: 316 TIYDHERKRCISASMDTTIRIWD-LENGEL----MY-----TLQGHTALVGLL-----RL 360
Query: 262 TKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWDCDGKCIAGGIGDG 321
+ + +++++ DGS+R WD N++ + L+ A+TT + D ++G +
Sbjct: 361 SDKFLVSAAADGSIRGWDANDYSRKFSYHHTNLS-----AITTF-YVSDNILVSG--SEN 412
Query: 322 SIQVWNLKPG 331
++NL+ G
Sbjct: 413 QFNIYNLRSG 422
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 69/290 (23%), Positives = 118/290 (40%), Gaps = 62/290 (21%)
Query: 145 LKGHTKIVSALAVDHSGSRVLSGSYDYTVRMYD---------FQGMNSRLQSFRQLEPSE 195
L GH V AL H G V SGS D TVR++D F+G NS + R L+ E
Sbjct: 158 LSGHDGGVWALKYAHGGILV-SGSTDRTVRVWDIKKGCCTHVFEGHNS---TVRCLDIVE 213
Query: 196 GHQVRNLSWSPTSDRFLCVTGSAQAKIY---------------DRDGLTLGEFVKGDMYI 240
++ + VTGS ++ + D + + + Y
Sbjct: 214 YKNIKYI-----------VTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYF 262
Query: 241 RDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPGRV 300
+ +GH+ + H +++ S D +L +WDV +Q + + R+
Sbjct: 263 VGV--LRGHMASVRTVSGHG---NIVVSGSYDNTLIVWDV----AQMKCLYILSGHTDRI 313
Query: 301 AVTTCAWDCDGK-CIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHSDDITALKFSSDGRI 359
T +D + K CI+ + D +I++W+L+ G ++ +GH+ + L+ S +
Sbjct: 314 YSTI--YDHERKRCISASM-DTTIRIWDLENG----ELMYTLQGHTALVGLLRLSD--KF 364
Query: 360 LLSRSFDGSLKVWDL----RKMKEPLKVFEDLPNNYAQTNVAFSPDEQLF 405
L+S + DGS++ WD RK + Y N+ S E F
Sbjct: 365 LVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGSENQF 414
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 53/263 (20%), Positives = 97/263 (36%), Gaps = 59/263 (22%)
Query: 150 KIVSALAVDHSGSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSD 209
+ +S++A G+ + G+ V+++D Q RL++ S +V +LSW +
Sbjct: 159 EYISSVAWIKEGNYLAVGTSSAEVQLWDVQ-QQKRLRNM----TSHSARVGSLSW----N 209
Query: 210 RFLCVTGSAQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTS 269
++ +GS I+ D + ++ L +CGL W P + + +
Sbjct: 210 SYILSSGSRSGHIHHHD------VRVAEHHVATLSGHSQEVCGL---RWAPDGRH-LASG 259
Query: 270 SEDGSLRIWDVNEFKSQKQVIKPKLARPGRV-AVTTCAWDCDGKCIAGGIGDGSIQVWNL 328
D + +W + ++ G V AV C W + GG D I++WN+
Sbjct: 260 GNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNV 319
Query: 329 KPGWG-SRPDIHVE--------------------------------------KGHSDDIT 349
G S D H + KGH+ +
Sbjct: 320 CSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVL 379
Query: 350 ALKFSSDGRILLSRSFDGSLKVW 372
+L S DG + S + D +L++W
Sbjct: 380 SLTMSPDGATVASAAADETLRLW 402
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 45/224 (20%), Positives = 91/224 (40%), Gaps = 32/224 (14%)
Query: 157 VDHSGSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSDRFLCVTG 216
VD S VL+ + D +V ++ + LQ + +P G + +++W + T
Sbjct: 122 VDWSSGNVLAVALDNSVYLWSASSGDI-LQLLQMEQP--GEYISSVAWIKEGNYLAVGTS 178
Query: 217 SAQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTS-SEDGSL 275
SA+ +++D V+ +R++ + + L+ + IL+S S G +
Sbjct: 179 SAEVQLWD---------VQQQKRLRNMTSHSARVGSLSWNSY-------ILSSGSRSGHI 222
Query: 276 RIWDVNEFKSQKQVIKPKLARPGRVAVTTCA--WDCDGKCIAGGIGDGSIQVWNLKPGWG 333
DV +V + +A + C W DG+ +A G D + VW PG G
Sbjct: 223 HHHDV-------RVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEG 275
Query: 334 SRPDIHVEKGHSDDITALKFSSDGRILLSR---SFDGSLKVWDL 374
+ H + A+ + +L+ + D +++W++
Sbjct: 276 GWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNV 319
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 67/295 (22%), Positives = 120/295 (40%), Gaps = 64/295 (21%)
Query: 140 SNEIV-----LKGHTKIVSALAVDHSG-SRVLSGSYDYTVRMYDFQGMNSR----LQSFR 189
SNE++ L+GH V++LA + +LS S D T+ + G + + ++SF+
Sbjct: 3 SNEVLVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFK 62
Query: 190 QLEPSEGHQVRNLSWSPTSDRFLCVTGSAQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGH 249
H V++ + T+D ++ S +D+ L L + G+ Y R + GH
Sbjct: 63 ----GHSHIVQDCT--LTADGAYALSAS-----WDKT-LRLWDVATGETYQRFV----GH 106
Query: 250 ICGLTCGEWHPKTKETILTSSEDGSLRIWDV-----------NEFKSQKQVIKPKLARPG 298
+ + K I++ S D ++++W + N++ SQ +V+ + A
Sbjct: 107 KSDVMSVD-IDKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKA--- 162
Query: 299 RVAVTTCAWDCDGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEK---GHSDDITALKFSS 355
D D I D ++ WNL +E GH+ +I L S
Sbjct: 163 ---------DDDSVTIISAGNDKMVKAWNLNQ-------FQIEADFIGHNSNINTLTASP 206
Query: 356 DGRILLSRSFDGSLKVWDLRKMKEPLKVFEDLPNNYAQTNVAFSPDEQLFLTGTS 410
DG ++ S DG + +W+L K L ++AFSP+ T+
Sbjct: 207 DGTLIASAGKDGEIMLWNLAAK----KAMYTLSAQDEVFSLAFSPNRYWLAAATA 257
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 67/295 (22%), Positives = 120/295 (40%), Gaps = 64/295 (21%)
Query: 140 SNEIV-----LKGHTKIVSALAVDHSG-SRVLSGSYDYTVRMYDFQGMNSR----LQSFR 189
SNE++ L+GH V++LA + +LS S D T+ + G + + ++SF+
Sbjct: 3 SNEVLVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFK 62
Query: 190 QLEPSEGHQVRNLSWSPTSDRFLCVTGSAQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGH 249
H V++ + T+D ++ S +D+ L L + G+ Y R + GH
Sbjct: 63 ----GHSHIVQDCT--LTADGAYALSAS-----WDKT-LRLWDVATGETYQRFV----GH 106
Query: 250 ICGLTCGEWHPKTKETILTSSEDGSLRIWDV-----------NEFKSQKQVIKPKLARPG 298
+ + K I++ S D ++++W + N++ SQ +V+ + A
Sbjct: 107 KSDVMSVD-IDKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKA--- 162
Query: 299 RVAVTTCAWDCDGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEK---GHSDDITALKFSS 355
D D I D ++ WNL +E GH+ +I L S
Sbjct: 163 ---------DDDSVTIISAGNDKMVKAWNLNQ-------FQIEADFIGHNSNINTLTASP 206
Query: 356 DGRILLSRSFDGSLKVWDLRKMKEPLKVFEDLPNNYAQTNVAFSPDEQLFLTGTS 410
DG ++ S DG + +W+L K L ++AFSP+ T+
Sbjct: 207 DGTLIASAGKDGEIMLWNLAAK----KAMYTLSAQDEVFSLAFSPNRYWLAAATA 257
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 67/295 (22%), Positives = 120/295 (40%), Gaps = 64/295 (21%)
Query: 140 SNEIV-----LKGHTKIVSALAVDHSG-SRVLSGSYDYTVRMYDFQGMNSR----LQSFR 189
SNE++ L+GH V++LA + +LS S D T+ + G + + ++SF+
Sbjct: 3 SNEVLVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFK 62
Query: 190 QLEPSEGHQVRNLSWSPTSDRFLCVTGSAQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGH 249
H V++ + T+D ++ S +D+ L L + G+ Y R + GH
Sbjct: 63 ----GHSHIVQDCT--LTADGAYALSAS-----WDKT-LRLWDVATGETYQRFV----GH 106
Query: 250 ICGLTCGEWHPKTKETILTSSEDGSLRIWDV-----------NEFKSQKQVIKPKLARPG 298
+ + K I++ S D ++++W + N++ SQ +V+ + A
Sbjct: 107 KSDVMSVD-IDKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKA--- 162
Query: 299 RVAVTTCAWDCDGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEK---GHSDDITALKFSS 355
D D I D ++ WNL +E GH+ +I L S
Sbjct: 163 ---------DDDSVTIISAGNDKMVKAWNLNQ-------FQIEADFIGHNSNINTLTASP 206
Query: 356 DGRILLSRSFDGSLKVWDLRKMKEPLKVFEDLPNNYAQTNVAFSPDEQLFLTGTS 410
DG ++ S DG + +W+L K L ++AFSP+ T+
Sbjct: 207 DGTLIASAGKDGEIMLWNLAAK----KAMYTLSAQDEVFSLAFSPNRYWLAAATA 257
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 67/295 (22%), Positives = 120/295 (40%), Gaps = 64/295 (21%)
Query: 140 SNEIV-----LKGHTKIVSALAVDHSG-SRVLSGSYDYTVRMYDFQGMNSR----LQSFR 189
SNE++ L+GH V++LA + +LS S D T+ + G + + ++SF+
Sbjct: 3 SNEVLVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFK 62
Query: 190 QLEPSEGHQVRNLSWSPTSDRFLCVTGSAQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGH 249
H V++ + T+D ++ S +D+ L L + G+ Y R + GH
Sbjct: 63 ----GHSHIVQDCT--LTADGAYALSAS-----WDKT-LRLWDVATGETYQRFV----GH 106
Query: 250 ICGLTCGEWHPKTKETILTSSEDGSLRIWDV-----------NEFKSQKQVIKPKLARPG 298
+ + K I++ S D ++++W + N++ SQ +V+ + A
Sbjct: 107 KSDVMSVD-IDKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKA--- 162
Query: 299 RVAVTTCAWDCDGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEK---GHSDDITALKFSS 355
D D I D ++ WNL +E GH+ +I L S
Sbjct: 163 ---------DDDSVTIISAGNDKMVKAWNLNQ-------FQIEADFIGHNSNINTLTASP 206
Query: 356 DGRILLSRSFDGSLKVWDLRKMKEPLKVFEDLPNNYAQTNVAFSPDEQLFLTGTS 410
DG ++ S DG + +W+L K L ++AFSP+ T+
Sbjct: 207 DGTLIASAGKDGEIMLWNLAAK----KAMYTLSAQDEVFSLAFSPNRYWLAAATA 257
>pdb|4E54|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 435
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 72/295 (24%), Positives = 111/295 (37%), Gaps = 53/295 (17%)
Query: 179 QGMNSRLQSFRQLEPSEGHQVR--NLSWSPTSDRFLCVTGSAQAKIYDRDGLTLGEFVKG 236
Q L S+R L+ + R +L+W PT + V GS I L F
Sbjct: 100 QSFLHTLDSYRILQKAAPFDRRATSLAWHPTHPSTVAV-GSKGGDI------MLWNFGIK 152
Query: 237 D--MYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKPKL 294
D +I+ + G I GL +++P SS +G+ R+ D FK I
Sbjct: 153 DKPTFIKGI-GAGGSITGL---KFNPLNTNQFYASSMEGTTRLQD---FKGN---ILRVF 202
Query: 295 ARPGRVAVTTCAWDCDG--KCIAGGIGDGSIQVWNL--KPGWGSRPDIHVEKGHSDDIT- 349
A + + C+ D + + G G++ + N+ K W R H +T
Sbjct: 203 ASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGKELWNLR-------MHKKKVTH 255
Query: 350 -ALKFSSDGRILLSRSFDGSLKVWDLRKMKEPLKVFEDLPNNYAQTNVAFSPDEQLFLTG 408
AL D L + S D ++K+WDLR+++ LP+ + FSPD LT
Sbjct: 256 VALNPCCDW-FLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTT 314
Query: 409 --------TSVERESTTGGLLCFYDREKLELVSRVGISPACSVVQCAWHPKLNQI 455
S + GL+ R L ++ AWHP+ N I
Sbjct: 315 DQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTP----------IKAAWHPRYNLI 359
>pdb|3EI4|B Chain B, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|D Chain D, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|F Chain F, Structure Of The Hsddb1-Hsddb2 Complex
Length = 436
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 72/295 (24%), Positives = 111/295 (37%), Gaps = 53/295 (17%)
Query: 179 QGMNSRLQSFRQLEPSEGHQVR--NLSWSPTSDRFLCVTGSAQAKIYDRDGLTLGEFVKG 236
Q L S+R L+ + R +L+W PT + V GS I L F
Sbjct: 101 QSFLHTLDSYRILQKAAPFDRRATSLAWHPTHPSTVAV-GSKGGDI------MLWNFGIK 153
Query: 237 D--MYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKPKL 294
D +I+ + G I GL +++P SS +G+ R+ D FK I
Sbjct: 154 DKPTFIKGI-GAGGSITGL---KFNPLNTNQFYASSMEGTTRLQD---FKGN---ILRVF 203
Query: 295 ARPGRVAVTTCAWDCDG--KCIAGGIGDGSIQVWNL--KPGWGSRPDIHVEKGHSDDIT- 349
A + + C+ D + + G G++ + N+ K W R H +T
Sbjct: 204 ASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGKELWNLR-------MHKKKVTH 256
Query: 350 -ALKFSSDGRILLSRSFDGSLKVWDLRKMKEPLKVFEDLPNNYAQTNVAFSPDEQLFLTG 408
AL D L + S D ++K+WDLR+++ LP+ + FSPD LT
Sbjct: 257 VALNPCCDW-FLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTT 315
Query: 409 --------TSVERESTTGGLLCFYDREKLELVSRVGISPACSVVQCAWHPKLNQI 455
S + GL+ R L ++ AWHP+ N I
Sbjct: 316 DQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTP----------IKAAWHPRYNLI 360
>pdb|4E5Z|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 436
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 72/295 (24%), Positives = 111/295 (37%), Gaps = 53/295 (17%)
Query: 179 QGMNSRLQSFRQLEPSEGHQVR--NLSWSPTSDRFLCVTGSAQAKIYDRDGLTLGEFVKG 236
Q L S+R L+ + R +L+W PT + V GS I L F
Sbjct: 100 QSFLHTLDSYRILQKAAPFDRRATSLAWHPTHPSTVAV-GSKGGDI------MLWNFGIK 152
Query: 237 D--MYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKPKL 294
D +I+ + G I GL +++P SS +G+ R+ D FK I
Sbjct: 153 DKPTFIKGI-GAGGSITGL---KFNPLNTNQFYASSMEGTTRLQD---FKGN---ILRVF 202
Query: 295 ARPGRVAVTTCAWDCDG--KCIAGGIGDGSIQVWNL--KPGWGSRPDIHVEKGHSDDIT- 349
A + + C+ D + + G G++ + N+ K W R H +T
Sbjct: 203 ASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGKELWNLR-------MHKKKVTH 255
Query: 350 -ALKFSSDGRILLSRSFDGSLKVWDLRKMKEPLKVFEDLPNNYAQTNVAFSPDEQLFLTG 408
AL D L + S D ++K+WDLR+++ LP+ + FSPD LT
Sbjct: 256 VALNPCCDW-FLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTT 314
Query: 409 --------TSVERESTTGGLLCFYDREKLELVSRVGISPACSVVQCAWHPKLNQI 455
S + GL+ R L ++ AWHP+ N I
Sbjct: 315 DQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTP----------IKAAWHPRYNLI 359
>pdb|4A08|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 13 Bp Cpd-Duplex (
Purine At D-1 Position) At 3.0 A Resolution (Cpd 1)
pdb|4A09|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 15 Bp Cpd-Duplex
(Purine At D-1 Position) At 3.1 A Resolution (Cpd 2)
pdb|4A0A|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.6 A Resolution (Cpd 3)
pdb|4A0B|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.8 A Resolution (Cpd 4)
pdb|4A0B|D Chain D, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.8 A Resolution (Cpd 4)
pdb|4A0K|D Chain D, Structure Of Ddb1-Ddb2-Cul4a-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|B Chain B, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|D Chain D, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 382
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 58/272 (21%), Positives = 98/272 (36%), Gaps = 64/272 (23%)
Query: 239 YIRDLKNTKGHICG------LTCGEWHPKTKETILTSSEDGSLRIWD------------- 279
+IR LK+ K H +T EWHP T+ S+ G + +WD
Sbjct: 55 FIRSLKSYKLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGM 114
Query: 280 ----------VNEFKSQKQVIKPKLARPG---------RVAVTTCAWDCDGKCIAGGIGD 320
N+F + + + +V T +WD C+ D
Sbjct: 115 GPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSGSVIQVFAKTDSWDYWYCCV-----D 169
Query: 321 GSIQVWNLKPGWGSRP---------DIHVEKGHSDDITALKFSSDGRILL-SRSFDGSLK 370
S+ L G + +I EK H +T +F+ L+ + S D ++K
Sbjct: 170 VSVSRQMLATGDSTGRLLLLGLDGHEIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVK 229
Query: 371 VWDLRKMKEPLKVFEDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREKLE 430
+WDLR +K+ ++P+ F+P + L T E + YD K +
Sbjct: 230 LWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTDSTKLLTTDQRNEIR---VYSSYDWSKPD 286
Query: 431 LVSRVGISP-----ACSVVQCAWHPKLNQIFA 457
++ I P + ++ WHP + I A
Sbjct: 287 ---QIIIHPHRQFQHLTPIKATWHPMYDLIVA 315
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 53/263 (20%), Positives = 97/263 (36%), Gaps = 59/263 (22%)
Query: 150 KIVSALAVDHSGSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSD 209
+ +S++A G+ + G+ V+++D Q RL++ S +V +LSW +
Sbjct: 148 EYISSVAWIKEGNYLAVGTSSAEVQLWDVQ-QQKRLRNM----TSHSARVGSLSW----N 198
Query: 210 RFLCVTGSAQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTS 269
++ +GS I+ D + ++ L +CGL W P + + +
Sbjct: 199 SYILSSGSRSGHIHHHD------VRVAEHHVATLSGHSQEVCGL---RWAPDGRH-LASG 248
Query: 270 SEDGSLRIWDVNEFKSQKQVIKPKLARPGRV-AVTTCAWDCDGKCIAGGIGDGSIQVWNL 328
D + +W + ++ G V AV C W + GG D I++WN+
Sbjct: 249 GNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNV 308
Query: 329 KPGWG-SRPDIHVE--------------------------------------KGHSDDIT 349
G S D H + KGH+ +
Sbjct: 309 CSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVL 368
Query: 350 ALKFSSDGRILLSRSFDGSLKVW 372
+L S DG + S + D +L++W
Sbjct: 369 SLTMSPDGATVASAAADETLRLW 391
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 45/224 (20%), Positives = 91/224 (40%), Gaps = 32/224 (14%)
Query: 157 VDHSGSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSDRFLCVTG 216
VD S VL+ + D +V ++ + LQ + +P G + +++W + T
Sbjct: 111 VDWSSGNVLAVALDNSVYLWSASSGDI-LQLLQMEQP--GEYISSVAWIKEGNYLAVGTS 167
Query: 217 SAQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTS-SEDGSL 275
SA+ +++D V+ +R++ + + L+ + IL+S S G +
Sbjct: 168 SAEVQLWD---------VQQQKRLRNMTSHSARVGSLSWNSY-------ILSSGSRSGHI 211
Query: 276 RIWDVNEFKSQKQVIKPKLARPGRVAVTTCA--WDCDGKCIAGGIGDGSIQVWNLKPGWG 333
DV +V + +A + C W DG+ +A G D + VW PG G
Sbjct: 212 HHHDV-------RVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEG 264
Query: 334 SRPDIHVEKGHSDDITALKFSSDGRILLSR---SFDGSLKVWDL 374
+ H + A+ + +L+ + D +++W++
Sbjct: 265 GWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNV 308
>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form
Length = 402
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 50/235 (21%), Positives = 92/235 (39%), Gaps = 49/235 (20%)
Query: 196 GHQ--VRNLSWSPTSDRFLCVTGSAQAKIYDRDGLTLGEFVKGDMYI---RDLKNTKGHI 250
GH V +++W P +D + +GS + + E G + + + +GH
Sbjct: 79 GHTAPVLDIAWCPHNDNVI-ASGSEDCTV------MVWEIPDGGLVLPLREPVITLEGHT 131
Query: 251 CGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQV---IKPKLARPGRVAVTTCAW 307
+ WHP + +L++ D + +WDV + + + P + + W
Sbjct: 132 KRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPD-------TIYSVDW 184
Query: 308 DCDGKCIAGGIGD----------GSIQVWNLKPGWGSRPDIHVEKGHSDDITALKFSSDG 357
DG I D G++ +P G+RP +H F S+G
Sbjct: 185 SRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRP-VHA-----------VFVSEG 232
Query: 358 RIL---LSRSFDGSLKVWDLRKMKEPLKVFEDLPNNYAQTNVAFSPDEQL-FLTG 408
+IL SR + + +WD + ++EPL ++L + F PD + +L G
Sbjct: 233 KILTTGFSRMSERQVALWDTKHLEEPLS-LQELDTSSGVLLPFFDPDTNIVYLCG 286
>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
pdb|3ZWL|D Chain D, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
Length = 369
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 63/288 (21%), Positives = 115/288 (39%), Gaps = 40/288 (13%)
Query: 143 IVLKGHTKIVSALAVDHSGSRVLSGSYDYTVRM-YDFQGMNSRLQSFRQLEPSEGHQVRN 201
I L GH + ++ + + G + S S D + + Y G +L +GH
Sbjct: 26 IKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNG--------ERLGTLDGHT--G 75
Query: 202 LSWSPTSDRF--LCVTGSAQAKIYDRDGLTLGEFV---KGDMYIRDLKNTKGHICGLTCG 256
WS D F CVTGSA I D ++ G+ V K + ++ ++ + CG
Sbjct: 76 TIWSIDVDCFTKYCVTGSADYSIKLWD-VSNGQCVATWKSPVPVKRVEFSP-------CG 127
Query: 257 EWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKPK-------LARPGRVAVTTCAWDC 309
+ + ++ + GS+ I+++ + ++ K + G A T W
Sbjct: 128 NYFLAILDNVMKNP--GSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWST 185
Query: 310 DGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHSDDITALKFSSDGRILLSRSFDGSL 369
GK I G DG I +++ + I + H I+ ++FS D ++ S D +
Sbjct: 186 KGKYIIAGHKDGKISKYDVSNNYEYVDSIDL---HEKSISDMQFSPDLTYFITSSRDTNS 242
Query: 370 KVWDLRKMKEPLKVFEDLPNNYAQTNVAFSPDEQLFLTGTSVERESTT 417
+ D+ ++ K D P N A +P ++ + G E + T
Sbjct: 243 FLVDVSTLQVLKKYETDCPLNTA----VITPLKEFIILGGGQEAKDVT 286
>pdb|3EI1|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 14 Bp 6-4
Photoproduct Containing Dna-Duplex
pdb|3EI2|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Abasic Site
Containing Dna-Duplex
pdb|3EI3|B Chain B, Structure Of The Hsddb1-Drddb2 Complex
Length = 383
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 58/272 (21%), Positives = 98/272 (36%), Gaps = 64/272 (23%)
Query: 239 YIRDLKNTKGHICG------LTCGEWHPKTKETILTSSEDGSLRIWD------------- 279
+IR LK+ K H +T EWHP T+ S+ G + +WD
Sbjct: 56 FIRSLKSYKLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGM 115
Query: 280 ----------VNEFKSQKQVIKPKLARPG---------RVAVTTCAWDCDGKCIAGGIGD 320
N+F + + + +V T +WD C+ D
Sbjct: 116 GPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSGSVIQVFAKTDSWDYWYCCV-----D 170
Query: 321 GSIQVWNLKPGWGSRP---------DIHVEKGHSDDITALKFSSDGRILL-SRSFDGSLK 370
S+ L G + +I EK H +T +F+ L+ + S D ++K
Sbjct: 171 VSVSRQMLATGDSTGRLLLLGLDGHEIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVK 230
Query: 371 VWDLRKMKEPLKVFEDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREKLE 430
+WDLR +K+ ++P+ F+P + L T E + YD K +
Sbjct: 231 LWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTDSTKLLTTDQRNEIR---VYSSYDWSKPD 287
Query: 431 LVSRVGISP-----ACSVVQCAWHPKLNQIFA 457
++ I P + ++ WHP + I A
Sbjct: 288 ---QIIIHPHRQFQHLTPIKATWHPMYDLIVA 316
>pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex
Length = 344
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 49/194 (25%), Positives = 83/194 (42%), Gaps = 26/194 (13%)
Query: 321 GSIQVWNLKPGWGSRPDIHVEKGHSDDITALKFSSDGRILLSRSFDGSLKVWDLRKMKEP 380
G++++W L + H D ++ + S G +S S D +KVWDL +
Sbjct: 103 GAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQ--- 159
Query: 381 LKVFEDLPNNYAQ-TNVAFSPD-EQLFLTGTSVERESTTGGLLCFYDREKLELVSRVGIS 438
V + AQ T VA SP + +FL+ + R + +D + S++G S
Sbjct: 160 -VVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNR-------ILLWDTRCPKPASQIGCS 211
Query: 439 -PACSVVQCAWHPKLNQIFATAGDKSQGGTHILYDPRLSERGALVCVARAPRKKSVDDFE 497
P AWHP+ +++F GD + GT L D + + CV +V
Sbjct: 212 APGYLPTSLAWHPQQSEVF-VFGD--ENGTVSLVDTKSTS-----CV----LSSAVHSQC 259
Query: 498 VAPVIHNPHALPLF 511
V ++ +PH++P
Sbjct: 260 VTGLVFSPHSVPFL 273
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 33/137 (24%), Positives = 59/137 (43%), Gaps = 24/137 (17%)
Query: 148 HTKIVSALAVDHSGSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPT 207
H IVS ++V SG++ +SGS D ++++D L S+R + QV ++ SP
Sbjct: 126 HDDIVSTVSVLSSGTQAVSGSKDICIKVWDL-AQQVVLSSYR----AHAAQVTCVAASPH 180
Query: 208 SDR-FLCVTGSAQAKIYD----RDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKT 262
D FL + + ++D + +G G + T WHP+
Sbjct: 181 KDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLP--------------TSLAWHPQQ 226
Query: 263 KETILTSSEDGSLRIWD 279
E + E+G++ + D
Sbjct: 227 SEVFVFGDENGTVSLVD 243
Score = 32.7 bits (73), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 54/133 (40%), Gaps = 10/133 (7%)
Query: 243 LKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPGRVAV 302
L + + H +TC P L+ SED + +WD K Q+ + PG +
Sbjct: 162 LSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQI---GCSAPGYLP- 217
Query: 303 TTCAWD-CDGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHSDDITALKFSSDGR-IL 360
T+ AW + G +G++ + + K S + HS +T L FS L
Sbjct: 218 TSLAWHPQQSEVFVFGDENGTVSLVDTK----STSCVLSSAVHSQCVTGLVFSPHSVPFL 273
Query: 361 LSRSFDGSLKVWD 373
S S D SL V D
Sbjct: 274 ASLSEDCSLAVLD 286
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 64/285 (22%), Positives = 115/285 (40%), Gaps = 59/285 (20%)
Query: 145 LKGHTKIVSALAVDHSG-SRVLSGSYDYTVRMYDFQGMNSR----LQSFRQLEPSEGHQV 199
L+GH V++LA + +LS S D T+ + G + + ++SF+ H V
Sbjct: 7 LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFK----GHSHIV 62
Query: 200 RNLSWSPTSDRFLCVTGSAQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWH 259
++ + T+D ++ S +D+ L L + G+ Y R + GH + +
Sbjct: 63 QDCT--LTADGAYALSAS-----WDKT-LRLWDVATGETYQRFV----GHKSDVMSVD-I 109
Query: 260 PKTKETILTSSEDGSLRIWDV-----------NEFKSQKQVIKPKLARPGRVAVTTCAWD 308
K I++ S D ++++W + N++ SQ +V+ + A D
Sbjct: 110 DKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKA------------D 157
Query: 309 CDGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEK---GHSDDITALKFSSDGRILLSRSF 365
D I D ++ WNL +E GH+ +I L S DG ++ S
Sbjct: 158 DDSVTIISAGNDKMVKAWNLNQ-------FQIEADFIGHNSNINTLTASPDGTLIASAGK 210
Query: 366 DGSLKVWDLRKMKEPLKVFEDLPNNYAQTNVAFSPDEQLFLTGTS 410
DG + +W+L K L ++AFSP+ T+
Sbjct: 211 DGEIMLWNLAAK----KAMYTLSAQDEVFSLAFSPNRYWLAAATA 251
>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s
Reg Particle Of The Proteasome
Length = 417
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/113 (23%), Positives = 57/113 (50%), Gaps = 11/113 (9%)
Query: 261 KTKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWDCDGKCIAGGIGD 320
+ + IL ++E G +++ D N F Q+++ + ++ +T + G+ + D
Sbjct: 105 QMRRFILGTTE-GDIKVLDSN-FNLQREIDQAHVSE-----ITKLKFFPSGEALISSSQD 157
Query: 321 GSIQVWNLKPGWGSRPDIHVEKGHSDDITALKFSSDGRILLSRSFDGSLKVWD 373
+++W++K G R I GH +T + GR +LS S DG++++W+
Sbjct: 158 MQLKIWSVKDGSNPRTLI----GHRATVTDIAIIDRGRNVLSASLDGTIRLWE 206
Score = 33.9 bits (76), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 23/41 (56%)
Query: 340 VEKGHSDDITALKFSSDGRILLSRSFDGSLKVWDLRKMKEP 380
+++ H +IT LKF G L+S S D LK+W ++ P
Sbjct: 131 IDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNP 171
Score = 33.9 bits (76), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 52/236 (22%), Positives = 98/236 (41%), Gaps = 51/236 (21%)
Query: 140 SNEIVLKGHTKIVSALAVDHSGSRVLSGSYDYTVRMYDFQGMNSRLQSF-RQLEPSEGHQ 198
SN L GH V+ +A+ G VLS S D T+R+++ G + + +F R+ P +G
Sbjct: 169 SNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWE-CGTGTTIHTFNRKENPHDG-- 225
Query: 199 VRNLSWSPTSDRFLCVTGSAQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEW 258
V +++ +DR L +++ ++ L G + K Y+ GH+ G+
Sbjct: 226 VNSIALFVGTDRQLHEISTSK-----KNNLEFGTYGK---YV-----IAGHVSGVIT--- 269
Query: 259 HPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWDCDG---KCIA 315
V+ S++Q I+ P + + + DG I
Sbjct: 270 ---------------------VHNVFSKEQTIQ----LPSKFTCSCNSLTVDGNNANYIY 304
Query: 316 GGIGDGSIQVWNLKPGWGSRPDIHVEKGHSDDITALKFSSDGRILLSRSFDGSLKV 371
G +G + W+L+ + + +G I + F++ G + +S FD S+K+
Sbjct: 305 AGYENGMLAQWDLRSPECPVGEFLINEGTP--INNVYFAA-GALFVSSGFDTSIKL 357
Score = 33.5 bits (75), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 40/85 (47%), Gaps = 7/85 (8%)
Query: 247 KGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPGRVAVTTCA 306
+ H+ +T ++ P + E +++SS+D L+IW V K P+ R VT A
Sbjct: 133 QAHVSEITKLKFFP-SGEALISSSQDMQLKIWSV------KDGSNPRTLIGHRATVTDIA 185
Query: 307 WDCDGKCIAGGIGDGSIQVWNLKPG 331
G+ + DG+I++W G
Sbjct: 186 IIDRGRNVLSASLDGTIRLWECGTG 210
>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14
pdb|3VL1|B Chain B, Crystal Structure Of Yeast Rpn14
Length = 420
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/113 (23%), Positives = 57/113 (50%), Gaps = 11/113 (9%)
Query: 261 KTKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWDCDGKCIAGGIGD 320
+ + IL ++E G +++ D N F Q+++ + ++ +T + G+ + D
Sbjct: 108 QMRRFILGTTE-GDIKVLDSN-FNLQREIDQAHVSE-----ITKLKFFPSGEALISSSQD 160
Query: 321 GSIQVWNLKPGWGSRPDIHVEKGHSDDITALKFSSDGRILLSRSFDGSLKVWD 373
+++W++K G R I GH +T + GR +LS S DG++++W+
Sbjct: 161 MQLKIWSVKDGSNPRTLI----GHRATVTDIAIIDRGRNVLSASLDGTIRLWE 209
Score = 33.9 bits (76), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 23/41 (56%)
Query: 340 VEKGHSDDITALKFSSDGRILLSRSFDGSLKVWDLRKMKEP 380
+++ H +IT LKF G L+S S D LK+W ++ P
Sbjct: 134 IDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNP 174
Score = 33.5 bits (75), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 52/236 (22%), Positives = 98/236 (41%), Gaps = 51/236 (21%)
Query: 140 SNEIVLKGHTKIVSALAVDHSGSRVLSGSYDYTVRMYDFQGMNSRLQSF-RQLEPSEGHQ 198
SN L GH V+ +A+ G VLS S D T+R+++ G + + +F R+ P +G
Sbjct: 172 SNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWE-CGTGTTIHTFNRKENPHDG-- 228
Query: 199 VRNLSWSPTSDRFLCVTGSAQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEW 258
V +++ +DR L +++ ++ L G + K Y+ GH+ G+
Sbjct: 229 VNSIALFVGTDRQLHEISTSK-----KNNLEFGTYGK---YV-----IAGHVSGVIT--- 272
Query: 259 HPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWDCDG---KCIA 315
V+ S++Q I+ P + + + DG I
Sbjct: 273 ---------------------VHNVFSKEQTIQ----LPSKFTCSCNSLTVDGNNANYIY 307
Query: 316 GGIGDGSIQVWNLKPGWGSRPDIHVEKGHSDDITALKFSSDGRILLSRSFDGSLKV 371
G +G + W+L+ + + +G I + F++ G + +S FD S+K+
Sbjct: 308 AGYENGMLAQWDLRSPECPVGEFLINEGTP--INNVYFAA-GALFVSSGFDTSIKL 360
Score = 33.5 bits (75), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 40/85 (47%), Gaps = 7/85 (8%)
Query: 247 KGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPGRVAVTTCA 306
+ H+ +T ++ P + E +++SS+D L+IW V K P+ R VT A
Sbjct: 136 QAHVSEITKLKFFP-SGEALISSSQDMQLKIWSV------KDGSNPRTLIGHRATVTDIA 188
Query: 307 WDCDGKCIAGGIGDGSIQVWNLKPG 331
G+ + DG+I++W G
Sbjct: 189 IIDRGRNVLSASLDGTIRLWECGTG 213
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 69/290 (23%), Positives = 115/290 (39%), Gaps = 62/290 (21%)
Query: 145 LKGHTKIVSALAVDHSGSRVLSGSYDYTVRMYD---------FQGMNSRLQSFRQLEPSE 195
L GH V AL H G V SGS D TVR++D F+G NS + R L+ E
Sbjct: 158 LSGHDGGVWALKYAHGGILV-SGSTDRTVRVWDIKKGCCTHVFEGHNS---TVRCLDIVE 213
Query: 196 GHQVRNLSWSPTSDRFLCVTGSAQAKIY---------------DRDGLTLGEFVKGDMYI 240
++ + VTGS ++ + D + + + Y
Sbjct: 214 YKNIKYI-----------VTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYF 262
Query: 241 RDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPGRV 300
+ +GH + H +++ S D +L +WDV +Q + + R+
Sbjct: 263 VGV--LRGHXASVRTVSGHG---NIVVSGSYDNTLIVWDV----AQXKCLYILSGHTDRI 313
Query: 301 AVTTCAWDCDGK-CIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHSDDITALKFSSDGRI 359
T +D + K CI+ D +I++W+L+ G + +GH+ + L+ S +
Sbjct: 314 YSTI--YDHERKRCISAS-XDTTIRIWDLENG----ELXYTLQGHTALVGLLRLSD--KF 364
Query: 360 LLSRSFDGSLKVWDL----RKMKEPLKVFEDLPNNYAQTNVAFSPDEQLF 405
L+S + DGS++ WD RK + Y N+ S E F
Sbjct: 365 LVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGSENQF 414
Score = 37.4 bits (85), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 48/190 (25%), Positives = 81/190 (42%), Gaps = 34/190 (17%)
Query: 144 VLKGHTKIVSALAVDHSGSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLS 203
VL+GH S V G+ V+SGSYD T+ ++D + + L GH R S
Sbjct: 265 VLRGHX--ASVRTVSGHGNIVVSGSYDNTLIVWD-------VAQXKCLYILSGHTDRIYS 315
Query: 204 WSPTSDRFLCVTGSAQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGH--ICGLTCGEWHPK 261
+R C++ S I D L GE +GH + GL
Sbjct: 316 TIYDHERKRCISASXDTTIRIWD-LENGELXY---------TLQGHTALVGLL-----RL 360
Query: 262 TKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWDCDGKCIAGGIGDG 321
+ + +++++ DGS+R WD N++ + L+ A+TT + D ++G +
Sbjct: 361 SDKFLVSAAADGSIRGWDANDYSRKFSYHHTNLS-----AITTF-YVSDNILVSG--SEN 412
Query: 322 SIQVWNLKPG 331
++NL+ G
Sbjct: 413 QFNIYNLRSG 422
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 42/184 (22%), Positives = 77/184 (41%), Gaps = 49/184 (26%)
Query: 145 LKGHTKIVSALAVDHSGSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQ------ 198
+ H + ++AV + VLSGS D TV++++++ + Q+F EGH+
Sbjct: 93 FEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTF------EGHEHFVMCV 146
Query: 199 ------------------VRNLSWSPTSDRFLCVTGSAQAKIY--------------DRD 226
V+ S ++ F TG + Y D
Sbjct: 147 AFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASD 206
Query: 227 GLTLGEFVKGDMYIRDLKNT-KGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKS 285
LT+ + D + T +GH+ ++ +HP T I++ SEDG+L+IW+ + +K
Sbjct: 207 DLTIKIW---DYQTKSCVATLEGHMSNVSFAVFHP-TLPIIISGSEDGTLKIWNSSTYKV 262
Query: 286 QKQV 289
+K +
Sbjct: 263 EKTL 266
Score = 32.7 bits (73), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 40/224 (17%), Positives = 94/224 (41%), Gaps = 29/224 (12%)
Query: 164 VLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGH--QVRNLSWSPTSDRFLCVTGSAQAK 221
++ GS D+ +R++++ ++ F E H +R+++ PT L + K
Sbjct: 70 IIVGSDDFRIRVFNYN-TGEKVVDF------EAHPDYIRSIAVHPTKPYVLSGSDDLTVK 122
Query: 222 IYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVN 281
+++ + E + +GH + C ++PK T + D ++++W +
Sbjct: 123 LWNWENNWALE-----------QTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLG 171
Query: 282 EFKSQKQVIKPKLARPGRVAVTTCAWDCDGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVE 341
+ + + V D + D +I++W+ + ++ +
Sbjct: 172 QSTPNFTLTTGQERGVNYVDYYPLP---DKPYMITASDDLTIKIWDYQ----TKSCVATL 224
Query: 342 KGHSDDITALKFSSDGRILLSRSFDGSLKVWD--LRKMKEPLKV 383
+GH +++ F I++S S DG+LK+W+ K+++ L V
Sbjct: 225 EGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNV 268
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 42/184 (22%), Positives = 77/184 (41%), Gaps = 49/184 (26%)
Query: 145 LKGHTKIVSALAVDHSGSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQ------ 198
+ H + ++AV + VLSGS D TV++++++ + Q+F EGH+
Sbjct: 93 FEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTF------EGHEHFVMCV 146
Query: 199 ------------------VRNLSWSPTSDRFLCVTGSAQAKIY--------------DRD 226
V+ S ++ F TG + Y D
Sbjct: 147 AFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASD 206
Query: 227 GLTLGEFVKGDMYIRDLKNT-KGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKS 285
LT+ + D + T +GH+ ++ +HP T I++ SEDG+L+IW+ + +K
Sbjct: 207 DLTIKIW---DYQTKSCVATLEGHMSNVSFAVFHP-TLPIIISGSEDGTLKIWNSSTYKV 262
Query: 286 QKQV 289
+K +
Sbjct: 263 EKTL 266
Score = 32.7 bits (73), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 40/224 (17%), Positives = 94/224 (41%), Gaps = 29/224 (12%)
Query: 164 VLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGH--QVRNLSWSPTSDRFLCVTGSAQAK 221
++ GS D+ +R++++ ++ F E H +R+++ PT L + K
Sbjct: 70 IIVGSDDFRIRVFNYN-TGEKVVDF------EAHPDYIRSIAVHPTKPYVLSGSDDLTVK 122
Query: 222 IYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVN 281
+++ + E + +GH + C ++PK T + D ++++W +
Sbjct: 123 LWNWENNWALE-----------QTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLG 171
Query: 282 EFKSQKQVIKPKLARPGRVAVTTCAWDCDGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVE 341
+ + + V D + D +I++W+ + ++ +
Sbjct: 172 QSTPNFTLTTGQERGVNYVDYYPLP---DKPYMITASDDLTIKIWDYQ----TKSCVATL 224
Query: 342 KGHSDDITALKFSSDGRILLSRSFDGSLKVWD--LRKMKEPLKV 383
+GH +++ F I++S S DG+LK+W+ K+++ L V
Sbjct: 225 EGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNV 268
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 53/263 (20%), Positives = 97/263 (36%), Gaps = 59/263 (22%)
Query: 150 KIVSALAVDHSGSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSD 209
+ +S++A G+ + G+ V+++D Q RL++ S +V +LSW +
Sbjct: 68 EYISSVAWIKEGNYLAVGTSSAEVQLWDVQ-QQKRLRNM----TSHSARVGSLSW----N 118
Query: 210 RFLCVTGSAQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTS 269
++ +GS I+ D + ++ L +CGL W P + + +
Sbjct: 119 SYILSSGSRSGHIHHHD------VRVAEHHVATLSGHSQEVCGL---RWAPDGRH-LASG 168
Query: 270 SEDGSLRIWDVNEFKSQKQVIKPKLARPGRV-AVTTCAWDCDGKCIAGGIGDGSIQVWNL 328
D + +W + ++ G V AV C W + GG D I++WN+
Sbjct: 169 GNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNV 228
Query: 329 KPGWG-SRPDIHVE--------------------------------------KGHSDDIT 349
G S D H + KGH+ +
Sbjct: 229 CSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVL 288
Query: 350 ALKFSSDGRILLSRSFDGSLKVW 372
+L S DG + S + D +L++W
Sbjct: 289 SLTMSPDGATVASAAADETLRLW 311
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 37.4 bits (85), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 42/184 (22%), Positives = 77/184 (41%), Gaps = 49/184 (26%)
Query: 145 LKGHTKIVSALAVDHSGSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQ------ 198
+ H + ++AV + VLSGS D TV++++++ + Q+F EGH+
Sbjct: 93 FEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTF------EGHEHFVMCV 146
Query: 199 ------------------VRNLSWSPTSDRFLCVTGSAQAKIY--------------DRD 226
V+ S ++ F TG + Y D
Sbjct: 147 AFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASD 206
Query: 227 GLTLGEFVKGDMYIRDLKNT-KGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKS 285
LT+ + D + T +GH+ ++ +HP T I++ SEDG+L+IW+ + +K
Sbjct: 207 DLTIKIW---DYQTKSCVATLEGHMSNVSFAVFHP-TLPIIISGSEDGTLKIWNSSTYKV 262
Query: 286 QKQV 289
+K +
Sbjct: 263 EKTL 266
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 40/224 (17%), Positives = 94/224 (41%), Gaps = 29/224 (12%)
Query: 164 VLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGH--QVRNLSWSPTSDRFLCVTGSAQAK 221
++ GS D+ +R++++ ++ F E H +R+++ PT L + K
Sbjct: 70 IIVGSDDFRIRVFNYN-TGEKVVDF------EAHPDYIRSIAVHPTKPYVLSGSDDLTVK 122
Query: 222 IYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVN 281
+++ + E + +GH + C ++PK T + D ++++W +
Sbjct: 123 LWNWENNWALE-----------QTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLG 171
Query: 282 EFKSQKQVIKPKLARPGRVAVTTCAWDCDGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVE 341
+ + + V D + D +I++W+ + ++ +
Sbjct: 172 QSTPNFTLTTGQERGVNYVDYYPLP---DKPYMITASDDLTIKIWDYQ----TKSCVATL 224
Query: 342 KGHSDDITALKFSSDGRILLSRSFDGSLKVWD--LRKMKEPLKV 383
+GH +++ F I++S S DG+LK+W+ K+++ L V
Sbjct: 225 EGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNV 268
>pdb|3FMO|A Chain A, Crystal Structure Of The Nucleoporin Nup214 In Complex
With The Dead- Box Helicase Ddx19
pdb|3FMP|A Chain A, Crystal Structure Of The Nucleoporin Nup214 In Complex
With The Dead- Box Helicase Ddx19
pdb|3FMP|C Chain C, Crystal Structure Of The Nucleoporin Nup214 In Complex
With The Dead- Box Helicase Ddx19
Length = 450
Score = 37.4 bits (85), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 38/85 (44%), Gaps = 9/85 (10%)
Query: 239 YIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPG 298
Y + LK+ G + + +W+P + DGS+ + V E +K P
Sbjct: 141 YHKLLKDAGGMVIDM---KWNPTVPSMVAVCLADGSIAVLQVTE------TVKVCATLPS 191
Query: 299 RVAVTTCAWDCDGKCIAGGIGDGSI 323
VAVT+ W GK +A G +G++
Sbjct: 192 TVAVTSVCWSPKGKQLAVGKQNGTV 216
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 37.4 bits (85), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 42/184 (22%), Positives = 77/184 (41%), Gaps = 49/184 (26%)
Query: 145 LKGHTKIVSALAVDHSGSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQ------ 198
+ H + ++AV + VLSGS D TV++++++ + Q+F EGH+
Sbjct: 93 FEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTF------EGHEHFVMCV 146
Query: 199 ------------------VRNLSWSPTSDRFLCVTGSAQAKIY--------------DRD 226
V+ S ++ F TG + Y D
Sbjct: 147 AFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASD 206
Query: 227 GLTLGEFVKGDMYIRDLKNT-KGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKS 285
LT+ + D + T +GH+ ++ +HP T I++ SEDG+L+IW+ + +K
Sbjct: 207 DLTIKIW---DYQTKSCVATLEGHMSNVSFAVFHP-TLPIIISGSEDGTLKIWNSSTYKV 262
Query: 286 QKQV 289
+K +
Sbjct: 263 EKTL 266
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 40/224 (17%), Positives = 94/224 (41%), Gaps = 29/224 (12%)
Query: 164 VLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGH--QVRNLSWSPTSDRFLCVTGSAQAK 221
++ GS D+ +R++++ ++ F E H +R+++ PT L + K
Sbjct: 70 IIVGSDDFRIRVFNYN-TGEKVVDF------EAHPDYIRSIAVHPTKPYVLSGSDDLTVK 122
Query: 222 IYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVN 281
+++ + E + +GH + C ++PK T + D ++++W +
Sbjct: 123 LWNWENNWALE-----------QTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLG 171
Query: 282 EFKSQKQVIKPKLARPGRVAVTTCAWDCDGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVE 341
+ + + V D + D +I++W+ + ++ +
Sbjct: 172 QSTPNFTLTTGQERGVNYVDYYPLP---DKPYMITASDDLTIKIWDYQ----TKSCVATL 224
Query: 342 KGHSDDITALKFSSDGRILLSRSFDGSLKVWD--LRKMKEPLKV 383
+GH +++ F I++S S DG+LK+W+ K+++ L V
Sbjct: 225 EGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNV 268
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 37.4 bits (85), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 39/155 (25%), Positives = 56/155 (36%), Gaps = 32/155 (20%)
Query: 144 VLKGHTKIVSALAVDHSGSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLS 203
L+GH V +LA D SG R+ S S D TVR++ RQ P V
Sbjct: 189 TLEGHESTVWSLAFDPSGQRLASCSDDRTVRIW------------RQYLPGNEQGVACSG 236
Query: 204 WSPTSDRFLCVTGSAQAKIYDRDGLTLGEFVK---GDMYIRDLKNT-------------- 246
P+ ++G IYD L + GD IR +
Sbjct: 237 SDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTA 296
Query: 247 ---KGHICGLTCGEWHPKTKETILTSSEDGSLRIW 278
+ H + C W+PK + + S+DG + W
Sbjct: 297 HLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFW 331
Score = 37.0 bits (84), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 49/230 (21%), Positives = 96/230 (41%), Gaps = 42/230 (18%)
Query: 155 LAVDHSGSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQ--VRNLSWSPTSDRFL 212
LA + +G+ + S D +R++ +G + +S SEGHQ VR ++WSP +
Sbjct: 22 LAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVL----SEGHQRTVRKVAWSPCGNYLA 77
Query: 213 CVTGSAQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSED 272
+ A I+ ++ + D + +GH + W P + + T S D
Sbjct: 78 SASFDATTCIWKKN--------QDDFEC--VTTLEGHENEVKSVAWAP-SGNLLATCSRD 126
Query: 273 GSLRIWDVNE---------FKSQKQVIKPKLARPGRVAVTTCAWDCDGKCIAGGIGDGSI 323
S+ +W+V+E S Q +K + P + + +A D ++
Sbjct: 127 KSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQ------------ELLASASYDDTV 174
Query: 324 QVWNLKPG-WGSRPDIHVEKGHSDDITALKFSSDGRILLSRSFDGSLKVW 372
+++ + W + +GH + +L F G+ L S S D ++++W
Sbjct: 175 KLYREEEDDWVCCATL---EGHESTVWSLAFDPSGQRLASCSDDRTVRIW 221
Score = 33.5 bits (75), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 27/142 (19%), Positives = 65/142 (45%), Gaps = 19/142 (13%)
Query: 139 MSNEIVLKGHTKIVSALAVDHSGSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGH- 197
+ ++ +GH + V +A G+ + S S+D T ++ F + EGH
Sbjct: 51 ICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIW-----KKNQDDFECVTTLEGHE 105
Query: 198 -QVRNLSWSPTSDRFLCVTGSAQAKIYDRDGLTLGEFVKG-DMYIRDLKNTKGHICGLTC 255
+V++++W+P+ + + +++ D E V + + +D+K+
Sbjct: 106 NEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVV-------- 157
Query: 256 GEWHPKTKETILTSSEDGSLRI 277
WHP ++E + ++S D ++++
Sbjct: 158 --WHP-SQELLASASYDDTVKL 176
Score = 33.5 bits (75), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 35/155 (22%), Positives = 69/155 (44%), Gaps = 12/155 (7%)
Query: 258 WHPKTKETILTSSE-DGSLRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWDCDGKCIAG 316
W+P T+L S D +RIW + + K L+ + V AW G +A
Sbjct: 24 WNPAG--TLLASCGGDRRIRIWGT---EGDSWICKSVLSEGHQRTVRKVAWSPCGNYLAS 78
Query: 317 GIGDGSIQVWNLKPGWGSRPDIHVEKGHSDDITALKFSSDGRILLSRSFDGSLKVWDLRK 376
D + +W K + +GH +++ ++ ++ G +L + S D S+ VW++ +
Sbjct: 79 ASFDATTCIW--KKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDE 136
Query: 377 MKEPLKVFEDLPNNYAQ--TNVAFSPDEQLFLTGT 409
E V + N++ Q +V + P ++L + +
Sbjct: 137 EDEYECV--SVLNSHTQDVKHVVWHPSQELLASAS 169
>pdb|2OIT|A Chain A, Crystal Structure Of The N-Terminal Domain Of The Human
Proto-Oncogene Nup214CAN
Length = 434
Score = 37.0 bits (84), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 38/85 (44%), Gaps = 9/85 (10%)
Query: 239 YIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPG 298
Y + LK+ G + + +W+P + DGS+ + V E +K P
Sbjct: 141 YHKLLKDAGGMVIDM---KWNPTVPSMVAVCLADGSIAVLQVTE------TVKVCATLPS 191
Query: 299 RVAVTTCAWDCDGKCIAGGIGDGSI 323
VAVT+ W GK +A G +G++
Sbjct: 192 TVAVTSVCWSPKGKQLAVGKQNGTV 216
>pdb|3FHC|A Chain A, Crystal Structure Of Human Dbp5 In Complex With Nup214
Length = 405
Score = 37.0 bits (84), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 38/85 (44%), Gaps = 9/85 (10%)
Query: 239 YIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPG 298
Y + LK+ G + + +W+P + DGS+ + V E +K P
Sbjct: 141 YHKLLKDAGGMVIDM---KWNPTVPSMVAVCLADGSIAVLQVTE------TVKVCATLPS 191
Query: 299 RVAVTTCAWDCDGKCIAGGIGDGSI 323
VAVT+ W GK +A G +G++
Sbjct: 192 TVAVTSVCWSPKGKQLAVGKQNGTV 216
>pdb|3DXK|C Chain C, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR
Ck0944636
pdb|3DXM|C Chain C, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR
Ck0993548
pdb|3RSE|C Chain C, Structural And Biochemical Characterization Of Two Binding
Sites For Nucleation Promoting Factor Wasp-Vca On Arp23
COMPLEX
pdb|3UKR|C Chain C, Crystal Structure Of Bos Taurus Arp2/3 Complex With Bound
Inhibitor Ck-666
pdb|3UKU|C Chain C, Structure Of Arp2/3 Complex With Bound Inhibitor Ck-869
pdb|3ULE|C Chain C, Structure Of Bos Taurus Arp2/3 Complex With Bound
Inhibitor Ck-869 And Atp
Length = 372
Score = 35.8 bits (81), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 58/125 (46%), Gaps = 11/125 (8%)
Query: 338 IHVEKGHSDDITALKFSSDGRILLSRSFDGSLKVWDLR-KMKEPLKVFEDLPNNYAQTNV 396
+H K H+ +T + ++ D +++ D + VW L+ + +P V L N A V
Sbjct: 45 VHELKEHNGQVTGIDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVI--LRINRAARCV 102
Query: 397 AFSPDEQLFLTGTSVERESTTGGLLCFYDREKLELVSRVGISPA-CSVVQCAWHPKLNQI 455
++P+E+ F G+ S +C++++E V + P +V+ WHP N +
Sbjct: 103 RWAPNEKKFAVGSGSRVIS-----ICYFEQENDWWVCKHIKKPIRSTVLSLDWHP--NSV 155
Query: 456 FATAG 460
AG
Sbjct: 156 LLAAG 160
>pdb|1K8K|C Chain C, Crystal Structure Of Arp23 COMPLEX
pdb|1TYQ|C Chain C, Crystal Structure Of Arp23 COMPLEX WITH BOUND ATP AND
Calcium
pdb|1U2V|C Chain C, Crystal Structure Of Arp23 COMPLEX WITH BOUND ADP AND
Calcium
pdb|2P9I|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp And Crosslinked With Gluteraldehyde
pdb|2P9K|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Atp And Crosslinked With Glutaraldehyde
pdb|2P9L|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX
pdb|2P9N|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp
pdb|2P9P|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp
pdb|2P9S|C Chain C, Structure Of Bovine Arp23 COMPLEX CO-Crystallized With
AtpMG2+
pdb|2P9U|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Amp-Pnp And Calcium
Length = 372
Score = 35.8 bits (81), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 58/125 (46%), Gaps = 11/125 (8%)
Query: 338 IHVEKGHSDDITALKFSSDGRILLSRSFDGSLKVWDLR-KMKEPLKVFEDLPNNYAQTNV 396
+H K H+ +T + ++ D +++ D + VW L+ + +P V L N A V
Sbjct: 45 VHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVI--LRINRAARCV 102
Query: 397 AFSPDEQLFLTGTSVERESTTGGLLCFYDREKLELVSRVGISPA-CSVVQCAWHPKLNQI 455
++P+E+ F G+ S +C++++E V + P +V+ WHP N +
Sbjct: 103 RWAPNEKKFAVGSGSRVIS-----ICYFEQENDWWVCKHIKKPIRSTVLSLDWHP--NSV 155
Query: 456 FATAG 460
AG
Sbjct: 156 LLAAG 160
>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
pdb|4G56|D Chain D, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
Length = 357
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 41/164 (25%), Positives = 71/164 (43%), Gaps = 14/164 (8%)
Query: 302 VTTCAWDCDGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHSDDITALKFSSDGRILL 361
VT AW + K I G++++W + + + H D + L SDG +
Sbjct: 97 VTDVAWVSE-KGILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAV 155
Query: 362 SRSFDGSLKVWDLRKMKEPLKVFEDLPNNYAQTNVAFSP-DEQLFLTGTSVERESTTGGL 420
S D S+KVWDL + K LK + ++ VA P + +FL+ G
Sbjct: 156 SGGKDFSVKVWDLSQ-KAVLKSYN--AHSSEVNCVAACPGKDTIFLS-------CGEDGR 205
Query: 421 LCFYDREKLELVSRVGISPACSV-VQCAWHPKLNQIFATAGDKS 463
+ +D K + +R+ + ++ WHP+ + FA GD++
Sbjct: 206 ILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFA-CGDET 248
Score = 32.3 bits (72), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 45/169 (26%), Positives = 67/169 (39%), Gaps = 17/169 (10%)
Query: 243 LKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPGRVAV 302
LK+ H + C P L+ EDG + +WD + K + +
Sbjct: 174 LKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDT---RKPKPATRIDFCASDTIP- 229
Query: 303 TTCAWDCD-GKCIAGGIGDGSIQVWNLKPGWGSRPD-IHVEKGHSDDITALKFSSDGR-I 359
T+ W + A G G++ + N+K PD HS +IT L +S
Sbjct: 230 TSVTWHPEKDDTFACGDETGNVSLVNIK-----NPDSAQTSAVHSQNITGLAYSYHSSPF 284
Query: 360 LLSRSFDGSLKVWDLRKMKEPLKVFEDLPNNYAQTNVAFSP-DEQLFLT 407
L S S D ++ V D + +VF DL + T VA+SP D F T
Sbjct: 285 LASISEDCTVAVLD----ADFSEVFRDLSHRDFVTGVAWSPLDHSKFTT 329
>pdb|3I2N|A Chain A, Crystal Structure Of Wd40 Repeats Protein Wdr92
Length = 357
Score = 33.9 bits (76), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 33/153 (21%), Positives = 70/153 (45%), Gaps = 16/153 (10%)
Query: 266 ILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPGRVAVTTC---AWDCDGKCIAGGIGDGS 322
I+T S DG++++WD + ++P R T A++ + + + G +G
Sbjct: 132 IVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGD 191
Query: 323 IQVWNLKPGWGSRPDIHVEKGHSDDITALKFSSDG---RILLSRSFDGSLKVWDLRKMKE 379
I++++L+ R + +++ G + +L+F L++ S +G V+D+R +
Sbjct: 192 IKLFDLR-NMALRWETNIKNG----VCSLEFDRKDISMNKLVATSLEGKFHVFDMR-TQH 245
Query: 380 PLKVFEDLPNNYAQTNV----AFSPDEQLFLTG 408
P K F + ++ V + +LFLT
Sbjct: 246 PTKGFASVSEKAHKSTVWQVRHLPQNRELFLTA 278
Score = 32.0 bits (71), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 28/121 (23%), Positives = 58/121 (47%), Gaps = 15/121 (12%)
Query: 273 GSLRIWDVN--EFKSQKQVIKPKLARPGRVAVTTCAWDCDGKCIAGGIGDGSIQVWNLKP 330
G ++++++ + K +++ K K + G T+ + +A G G++ +WNL+
Sbjct: 44 GVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSL----QQRYLATGDFGGNLHIWNLE- 98
Query: 331 GWGSRPDIHVEKGHSDDITALKFSSDGRI------LLSRSFDGSLKVWDLRKMKEPLKVF 384
++ KGH + I A+ I +++ S DG++KVWD R+ +P+
Sbjct: 99 --APEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANM 156
Query: 385 E 385
E
Sbjct: 157 E 157
>pdb|4I79|A Chain A, Crystal Structure Of Human Nup43
pdb|4I79|B Chain B, Crystal Structure Of Human Nup43
Length = 399
Score = 33.5 bits (75), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 50/111 (45%), Gaps = 9/111 (8%)
Query: 266 ILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPGRVAVTTCA--WDCDGKCIAGGIGDGSI 323
ILT + G L+IWD F+ Q L+ G C +A G DG +
Sbjct: 205 ILTVNSIGQLKIWD---FRQQGNEPSQILSLTGDRVPLHCVDRHPNQQHVVATGGQDGML 261
Query: 324 QVWNLKPGWGSRPDIHVEKGHSDDITALKFS-SDGRILLSRSFDGSLKVWD 373
+W+++ G+ P + + K H ++ + F S+ L + S DGSL WD
Sbjct: 262 SIWDVRQ--GTMP-VSLLKAHEAEMWEVHFHPSNPEHLFTCSEDGSLWHWD 309
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 253 LTCGEWHPKTKETILTSSEDGSLRIWDVNE 282
L C + HP + + T +DG L IWDV +
Sbjct: 239 LHCVDRHPNQQHVVATGGQDGMLSIWDVRQ 268
Score = 29.6 bits (65), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 4/58 (6%)
Query: 225 RDG-LTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVN 281
+DG L++ + +G M + LK + + + +HP E + T SEDGSL WD +
Sbjct: 257 QDGMLSIWDVRQGTMPVSLLKAHEAEMWEV---HFHPSNPEHLFTCSEDGSLWHWDAS 311
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
Length = 330
Score = 33.5 bits (75), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 32/134 (23%), Positives = 61/134 (45%), Gaps = 11/134 (8%)
Query: 147 GHTKIVSALAVDHSGSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGH--QVRNLSW 204
H K + ++A S + +GS+D TV ++ + R L EGH +V+ ++W
Sbjct: 56 AHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAW 115
Query: 205 SPTSDRFLCVTGSAQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKE 264
S +D + T S ++ + GE + +++ H+ WHP ++
Sbjct: 116 S--NDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVI------WHP-SEA 166
Query: 265 TILTSSEDGSLRIW 278
+ +SS D ++RIW
Sbjct: 167 LLASSSYDDTVRIW 180
Score = 32.7 bits (73), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 38/170 (22%), Positives = 64/170 (37%), Gaps = 8/170 (4%)
Query: 204 WSPTSDRFLCVTGSAQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTK 263
WS + + TGS KI L D + D+ + H + W P T
Sbjct: 18 WSFDFSQGILATGSTDRKI------KLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTS 71
Query: 264 ETILTSSEDGSLRIWDVNEFKSQK-QVIKPKLARPGRVAVTTCAWDCDGKCIAGGIGDGS 322
+ S D ++ IW E + ++ + V AW DG +A D S
Sbjct: 72 -LLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKS 130
Query: 323 IQVWNLKPGWGSRPDIHVEKGHSDDITALKFSSDGRILLSRSFDGSLKVW 372
+ +W I V + HS D+ + + +L S S+D ++++W
Sbjct: 131 VWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIW 180
Score = 30.0 bits (66), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 24/114 (21%), Positives = 51/114 (44%), Gaps = 6/114 (5%)
Query: 301 AVTTCAWDCDGKCIAGGIGDGSIQVWNLKPGWGSRPD----IHVEKGHSDDITALKFSSD 356
A+ + AW +A G D ++ +W + R + + +GH +++ + +S+D
Sbjct: 60 AIRSVAWRPHTSLLAAGSFDSTVSIWAKEES-ADRTFEMDLLAIIEGHENEVKGVAWSND 118
Query: 357 GRILLSRSFDGSLKVWDLRKMKEPLKVFEDLPNNYAQT-NVAFSPDEQLFLTGT 409
G L + S D S+ +W+ + E + L + +V + P E L + +
Sbjct: 119 GYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSS 172
>pdb|1S4U|X Chain X, Crystal Structure Analysis Of The Beta-Propeller Protein
Ski8p
Length = 407
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 20/35 (57%)
Query: 341 EKGHSDDITALKFSSDGRILLSRSFDGSLKVWDLR 375
E HS + +L F+ G L S +DG L+ WD++
Sbjct: 297 EFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVK 331
>pdb|1SQ9|A Chain A, Structure Of Ski8p, A Wd Repeat Protein Involved In Mrna
Degradation And Meiotic Recombination
Length = 397
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 20/35 (57%)
Query: 341 EKGHSDDITALKFSSDGRILLSRSFDGSLKVWDLR 375
E HS + +L F+ G L S +DG L+ WD++
Sbjct: 287 EFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVK 321
>pdb|3DWL|C Chain C, Crystal Structure Of Fission Yeast Arp2/3 Complex Lacking
The Arp2 Subunit
pdb|3DWL|H Chain H, Crystal Structure Of Fission Yeast Arp2/3 Complex Lacking
The Arp2 Subunit
Length = 377
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 51/115 (44%), Gaps = 14/115 (12%)
Query: 211 FLCVTGSAQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSS 270
F+ T + Q ++Y++DG G + R + H +TC +W PK+ I+T S
Sbjct: 26 FVTTTATNQVELYEQDG-------NGWKHARTFSD---HDKIVTCVDWAPKSNR-IVTCS 74
Query: 271 EDGSLRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWDCDGKCIAGGIGDGSIQV 325
+D + +++ + KQ + L R R A T W + A G G I V
Sbjct: 75 QDRNAYVYEKRPDGTWKQTL--VLLRLNR-AATFVRWSPNEDKFAVGSGARVISV 126
>pdb|3JPX|A Chain A, Eed: A Novel Histone Trimethyllysine Binder Within The
Eed-Ezh2 Polycomb Complex
pdb|3JZG|A Chain A, Structure Of Eed In Complex With H3k27me3
pdb|3JZH|A Chain A, Eed-H3k79me3
Length = 402
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 34/162 (20%), Positives = 69/162 (42%), Gaps = 27/162 (16%)
Query: 243 LKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPGRVAV 302
+K+ GH + ++HP+ +L+ S+D +LR+W++ ++ V R V
Sbjct: 144 IKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNI---QTDTLVAIFGGVEGHRDEV 200
Query: 303 TTCAWDCDGKCIAGGIGDGSIQVWNL---------------KPGWGSRPDIHVEKGHSDD 347
+ +D G+ I D S+++W + P +RP I +K H D
Sbjct: 201 LSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFIS-QKIHFPD 259
Query: 348 ITALKFSSD--------GRILLSRSFDGSLKVWDLRKMKEPL 381
+ + G ++LS+S + ++ W KM++ +
Sbjct: 260 FSTRDIHRNYVDCVRWLGDLILSKSCENAIVCWKPGKMEDDI 301
>pdb|3K89|A Chain A, Structure Of X. Oryzae Pv. Oryzae Kacc10331, Xoo0880(Fabd)
Complexed With Glycerol
pdb|3R97|A Chain A, Crystal Structure Of Malonyl-Coa:acyl Carrier Protein
Transacylase (Fabd), Xoo0880, From Xanthomonas Oryzae
Pv. Oryzae Kacc10331
Length = 314
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 11/51 (21%), Positives = 26/51 (50%)
Query: 257 EWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAW 307
E HP+ +ET +SE + +W +++ ++ + + + +P +A W
Sbjct: 26 ELHPQIRETFAEASEGAGVDLWALSQGGPEEMLNRTEYTQPALLAAGVAVW 76
>pdb|2QXV|A Chain A, Structural Basis Of Ezh2 Recognition By Eed
Length = 361
Score = 30.0 bits (66), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 34/162 (20%), Positives = 69/162 (42%), Gaps = 27/162 (16%)
Query: 243 LKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPGRVAV 302
+K+ GH + ++HP+ +L+ S+D +LR+W++ ++ V R V
Sbjct: 103 IKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNI---QTDTLVAIFGGVEGHRDEV 159
Query: 303 TTCAWDCDGKCIAGGIGDGSIQVWNL---------------KPGWGSRPDIHVEKGHSDD 347
+ +D G+ I D S+++W + P +RP I +K H D
Sbjct: 160 LSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFIS-QKIHFPD 218
Query: 348 ITALKFSSD--------GRILLSRSFDGSLKVWDLRKMKEPL 381
+ + G ++LS+S + ++ W KM++ +
Sbjct: 219 FSTRDIHRNYVDCVRWLGDLILSKSCENAIVCWKPGKMEDDI 260
>pdb|3IIY|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H1k26 Peptide
pdb|3IJ0|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k9 Peptide
pdb|3IJ1|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H4k20 Peptide
pdb|3IJC|A Chain A, Crystal Structure Of Eed In Complex With Ndsb-195
Length = 365
Score = 29.6 bits (65), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 34/162 (20%), Positives = 69/162 (42%), Gaps = 27/162 (16%)
Query: 243 LKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPGRVAV 302
+K+ GH + ++HP+ +L+ S+D +LR+W++ ++ V R V
Sbjct: 107 IKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNI---QTDTLVAIFGGVEGHRDEV 163
Query: 303 TTCAWDCDGKCIAGGIGDGSIQVWNL---------------KPGWGSRPDIHVEKGHSDD 347
+ +D G+ I D S+++W + P +RP I +K H D
Sbjct: 164 LSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFIS-QKIHFPD 222
Query: 348 ITALKFSSD--------GRILLSRSFDGSLKVWDLRKMKEPL 381
+ + G ++LS+S + ++ W KM++ +
Sbjct: 223 FSTRDIHRNYVDCVRWLGDLILSKSCENAIVCWKPGKMEDDI 264
>pdb|3IIW|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k27 Peptide
Length = 365
Score = 29.6 bits (65), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 34/162 (20%), Positives = 69/162 (42%), Gaps = 27/162 (16%)
Query: 243 LKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPGRVAV 302
+K+ GH + ++HP+ +L+ S+D +LR+W++ ++ V R V
Sbjct: 107 IKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNI---QTDTLVAIFGGVEGHRDEV 163
Query: 303 TTCAWDCDGKCIAGGIGDGSIQVWNL---------------KPGWGSRPDIHVEKGHSDD 347
+ +D G+ I D S+++W + P +RP I +K H D
Sbjct: 164 LSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFIS-QKIHFPD 222
Query: 348 ITALKFSSD--------GRILLSRSFDGSLKVWDLRKMKEPL 381
+ + G ++LS+S + ++ W KM++ +
Sbjct: 223 FSTRDIHRNYVDCVRWLGDLILSKSCENAIVCWKPGKMEDDI 264
>pdb|3JZN|A Chain A, Structure Of Eed In Apo Form
pdb|3K26|A Chain A, Complex Structure Of Eed And Trimethylated H3k4
pdb|3K27|A Chain A, Complex Structure Of Eed And Trimethylated H3k9
Length = 366
Score = 29.6 bits (65), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 34/162 (20%), Positives = 69/162 (42%), Gaps = 27/162 (16%)
Query: 243 LKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPGRVAV 302
+K+ GH + ++HP+ +L+ S+D +LR+W++ ++ V R V
Sbjct: 108 IKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNI---QTDTLVAIFGGVEGHRDEV 164
Query: 303 TTCAWDCDGKCIAGGIGDGSIQVWNL---------------KPGWGSRPDIHVEKGHSDD 347
+ +D G+ I D S+++W + P +RP I +K H D
Sbjct: 165 LSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFIS-QKIHFPD 223
Query: 348 ITALKFSSD--------GRILLSRSFDGSLKVWDLRKMKEPL 381
+ + G ++LS+S + ++ W KM++ +
Sbjct: 224 FSTRDIHRNYVDCVRWLGDLILSKSCENAIVCWKPGKMEDDI 265
>pdb|2DUM|A Chain A, Crystal Structure Of Hypothetical Protein, Ph0823
pdb|2DUM|B Chain B, Crystal Structure Of Hypothetical Protein, Ph0823
pdb|2DUM|C Chain C, Crystal Structure Of Hypothetical Protein, Ph0823
pdb|2DUM|D Chain D, Crystal Structure Of Hypothetical Protein, Ph0823
Length = 170
Score = 29.3 bits (64), Expect = 6.7, Method: Composition-based stats.
Identities = 14/51 (27%), Positives = 29/51 (56%)
Query: 340 VEKGHSDDITALKFSSDGRILLSRSFDGSLKVWDLRKMKEPLKVFEDLPNN 390
V+ ++++ + S G++ LS F GS + LRK K+P+ + +++ N
Sbjct: 110 VKVAEEENVSLIILPSRGKLSLSHEFLGSTVMRVLRKTKKPVLIIKEVDEN 160
>pdb|1KHB|A Chain A, Pepck Complex With Nonhydrolyzable Gtp Analog, Native Data
pdb|1KHF|A Chain A, Pepck Complex With Pep
pdb|1KHG|A Chain A, Pepck
pdb|1M51|A Chain A, Pepck Complex With A Gtp-Competitive Inhibitor
pdb|1NHX|A Chain A, Pepck Complex With A Gtp-Competitive Inhibitor
pdb|2GMV|A Chain A, Pepck Complex With A Gtp-Competitive Inhibitor
pdb|2GMV|B Chain B, Pepck Complex With A Gtp-Competitive Inhibitor
Length = 625
Score = 29.3 bits (64), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 38/182 (20%), Positives = 69/182 (37%), Gaps = 21/182 (11%)
Query: 346 DDITALKFSSDGRILLSRSFDGSLKVWDLRKMKEPLKVFEDLPNNYAQTNVAFSPDEQLF 405
DDI +KF + G + +G V +K + + N TNVA + D ++
Sbjct: 313 DDIAWMKFDAQGHLRAINPENGFFGVAPGTSVKTNPNAIKTIQKNTIFTNVAETSDGGVY 372
Query: 406 LTGTSVERESTTGGLLCFY--------DREKLELVSRVGISPA--CSVVQCAWH-----P 450
G ++ +G + + D E + +PA C ++ AW P
Sbjct: 373 WEG--IDEPLASGVTITSWKNKEWSSEDGEPCAHPNSRFCTPASQCPIIDAAWESPEGVP 430
Query: 451 KLNQIFATAGDKSQGGTHILYDPRLSERGALVCVARAPRKKSVDDFEVAPVIHNPHAL-P 509
IF G + G ++Y+ + G V A + + + ++H+P A+ P
Sbjct: 431 IEGIIF---GGRRPAGVPLVYEALSWQHGVFVGAAMRSEATAAAEHKGKIIMHDPFAMRP 487
Query: 510 LF 511
F
Sbjct: 488 FF 489
>pdb|3F3F|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3G|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
Length = 351
Score = 28.9 bits (63), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 36/83 (43%), Gaps = 20/83 (24%)
Query: 302 VTTCAWDCDGKCIAGGIGDGSIQV---------WNLKPGWGSRPDIHVEKGHSDDITALK 352
V +D G+ +A D I+V W L W + H I A+
Sbjct: 14 VHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSW---------RAHDSSIVAID 64
Query: 353 FSS--DGRILLSRSFDGSLKVWD 373
++S GRI+ S S+D ++K+W+
Sbjct: 65 WASPEYGRIIASASYDKTVKLWE 87
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.133 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,138,398
Number of Sequences: 62578
Number of extensions: 809426
Number of successful extensions: 2102
Number of sequences better than 100.0: 103
Number of HSP's better than 100.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 1357
Number of HSP's gapped (non-prelim): 369
length of query: 616
length of database: 14,973,337
effective HSP length: 105
effective length of query: 511
effective length of database: 8,402,647
effective search space: 4293752617
effective search space used: 4293752617
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 54 (25.4 bits)