Query 048012
Match_columns 616
No_of_seqs 1052 out of 3901
Neff 9.9
Searched_HMMs 46136
Date Fri Mar 29 05:26:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048012.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048012hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0772 Uncharacterized conser 100.0 3E-103 7E-108 755.2 44.0 597 1-611 8-626 (641)
2 KOG0271 Notchless-like WD40 re 100.0 1.6E-47 3.5E-52 357.4 27.7 317 142-495 108-479 (480)
3 KOG0272 U4/U6 small nuclear ri 100.0 2.5E-42 5.4E-47 327.1 24.6 283 147-472 173-458 (459)
4 KOG0271 Notchless-like WD40 re 100.0 1.2E-41 2.6E-46 318.2 26.3 291 140-472 148-479 (480)
5 KOG0286 G-protein beta subunit 100.0 1.1E-39 2.4E-44 295.4 32.2 300 136-471 42-342 (343)
6 KOG0279 G protein beta subunit 100.0 3E-38 6.4E-43 284.6 30.9 295 142-474 8-313 (315)
7 KOG0272 U4/U6 small nuclear ri 100.0 4.6E-39 9.9E-44 305.0 20.8 269 194-495 173-458 (459)
8 KOG0265 U5 snRNP-specific prot 100.0 1.1E-36 2.4E-41 277.1 28.1 284 143-461 41-329 (338)
9 KOG0315 G-protein beta subunit 100.0 1.6E-35 3.4E-40 262.5 27.8 284 162-508 11-301 (311)
10 KOG0284 Polyadenylation factor 100.0 2.4E-36 5.3E-41 285.1 19.6 283 148-473 95-379 (464)
11 KOG0645 WD40 repeat protein [G 100.0 2.3E-34 4.9E-39 258.4 31.0 298 141-474 6-311 (312)
12 KOG0296 Angio-associated migra 100.0 1.7E-34 3.7E-39 269.3 28.6 319 139-496 54-397 (399)
13 KOG0318 WD40 repeat stress pro 100.0 5E-34 1.1E-38 277.5 33.0 319 137-474 178-602 (603)
14 KOG0273 Beta-transducin family 100.0 3.7E-34 8.1E-39 275.0 30.8 279 149-473 235-522 (524)
15 KOG0286 G-protein beta subunit 100.0 5.3E-34 1.2E-38 258.6 30.0 278 190-495 49-343 (343)
16 KOG0285 Pleiotropic regulator 100.0 1.3E-34 2.8E-39 269.0 25.9 301 136-496 138-438 (460)
17 KOG0279 G protein beta subunit 100.0 5.1E-34 1.1E-38 257.2 28.1 273 189-497 8-313 (315)
18 KOG0263 Transcription initiati 100.0 2E-34 4.4E-39 294.1 27.4 264 134-430 363-652 (707)
19 KOG0273 Beta-transducin family 100.0 1.9E-33 4.1E-38 270.2 32.4 324 136-496 166-522 (524)
20 KOG0316 Conserved WD40 repeat- 100.0 6.4E-34 1.4E-38 250.3 26.7 293 136-471 4-296 (307)
21 KOG0291 WD40-repeat-containing 100.0 5.4E-33 1.2E-37 280.7 35.1 353 136-512 132-537 (893)
22 KOG0282 mRNA splicing factor [ 100.0 8.2E-35 1.8E-39 280.7 20.0 300 136-472 201-503 (503)
23 KOG0266 WD40 repeat-containing 100.0 3.3E-33 7.2E-38 293.5 33.4 300 142-474 151-454 (456)
24 KOG0295 WD40 repeat-containing 100.0 9.1E-34 2E-38 264.3 24.7 289 142-472 101-404 (406)
25 KOG0318 WD40 repeat stress pro 100.0 3.2E-32 7E-37 265.0 35.7 323 144-497 142-560 (603)
26 KOG0263 Transcription initiati 100.0 1.2E-33 2.5E-38 288.6 24.3 208 142-377 444-651 (707)
27 KOG0319 WD40-repeat-containing 100.0 3E-33 6.6E-38 282.4 26.8 335 145-498 100-620 (775)
28 PLN00181 protein SPA1-RELATED; 100.0 3.3E-32 7.3E-37 307.2 38.4 305 145-496 479-792 (793)
29 KOG0315 G-protein beta subunit 100.0 2.7E-32 5.8E-37 242.0 28.3 273 142-447 33-307 (311)
30 KOG0293 WD40 repeat-containing 100.0 5.9E-33 1.3E-37 262.4 25.1 305 133-474 208-513 (519)
31 KOG0284 Polyadenylation factor 100.0 4E-34 8.6E-39 270.2 16.3 269 195-497 95-380 (464)
32 KOG0276 Vesicle coat complex C 100.0 2.4E-32 5.2E-37 270.5 27.6 282 143-462 7-291 (794)
33 cd00200 WD40 WD40 domain, foun 100.0 3.1E-31 6.6E-36 262.7 35.6 286 144-472 4-289 (289)
34 KOG0291 WD40-repeat-containing 100.0 2.2E-31 4.9E-36 269.1 33.8 322 141-498 181-551 (893)
35 KOG0641 WD40 repeat protein [G 100.0 4.6E-30 1E-34 224.5 31.9 309 137-473 20-348 (350)
36 KOG0319 WD40-repeat-containing 100.0 1.8E-31 3.9E-36 269.6 25.6 295 145-472 319-617 (775)
37 KOG0296 Angio-associated migra 100.0 6.2E-31 1.4E-35 245.6 26.5 288 142-473 99-397 (399)
38 KOG0640 mRNA cleavage stimulat 100.0 9.6E-31 2.1E-35 238.9 24.7 304 141-473 104-425 (430)
39 KOG0266 WD40 repeat-containing 100.0 4.3E-30 9.4E-35 269.9 31.9 271 194-496 157-453 (456)
40 KOG0292 Vesicle coat complex C 100.0 4.1E-30 9E-35 263.7 30.6 314 145-498 5-349 (1202)
41 KOG1407 WD40 repeat protein [F 100.0 8.6E-30 1.9E-34 227.8 28.2 280 143-462 14-294 (313)
42 KOG0288 WD40 repeat protein Ti 100.0 1.4E-31 3.1E-36 253.4 17.4 294 136-471 162-458 (459)
43 KOG1446 Histone H3 (Lys4) meth 100.0 3.5E-29 7.5E-34 230.7 32.4 290 143-474 8-303 (311)
44 KOG0295 WD40 repeat-containing 100.0 7.2E-31 1.6E-35 245.0 21.1 248 142-426 143-405 (406)
45 KOG0285 Pleiotropic regulator 100.0 2.3E-30 5E-35 240.7 23.4 260 190-489 145-404 (460)
46 KOG0281 Beta-TrCP (transducin 100.0 4.2E-31 9.1E-36 244.6 17.5 282 148-497 196-477 (499)
47 KOG0306 WD40-repeat-containing 100.0 7E-30 1.5E-34 258.2 26.7 294 141-497 365-664 (888)
48 KOG0645 WD40 repeat protein [G 100.0 8.7E-29 1.9E-33 222.6 29.3 276 192-497 10-311 (312)
49 KOG0275 Conserved WD40 repeat- 100.0 4.4E-30 9.6E-35 235.7 18.5 301 134-472 199-507 (508)
50 KOG0265 U5 snRNP-specific prot 100.0 9.3E-29 2E-33 225.5 25.8 277 185-494 36-335 (338)
51 KOG0277 Peroxisomal targeting 100.0 4.2E-29 9.2E-34 222.5 22.8 285 153-475 12-310 (311)
52 KOG0306 WD40-repeat-containing 100.0 1.2E-28 2.5E-33 249.4 29.0 241 247-513 370-652 (888)
53 PTZ00421 coronin; Provisional 100.0 3.6E-28 7.9E-33 254.2 32.8 283 148-452 19-315 (493)
54 KOG0313 Microtubule binding pr 100.0 5.4E-29 1.2E-33 233.7 23.6 269 138-427 133-418 (423)
55 KOG0643 Translation initiation 100.0 1.3E-28 2.7E-33 221.0 24.2 274 192-497 6-317 (327)
56 KOG0283 WD40 repeat-containing 100.0 4.4E-29 9.4E-34 257.5 23.2 296 147-477 265-579 (712)
57 KOG0313 Microtubule binding pr 100.0 1.9E-28 4E-33 230.1 25.2 291 147-472 103-416 (423)
58 KOG0310 Conserved WD40 repeat- 100.0 2.7E-28 5.8E-33 236.3 26.0 272 149-461 26-300 (487)
59 KOG2096 WD40 repeat protein [G 100.0 7.8E-28 1.7E-32 220.8 26.3 302 142-460 79-393 (420)
60 cd00200 WD40 WD40 domain, foun 100.0 2.8E-27 6.1E-32 234.2 32.8 268 194-495 7-289 (289)
61 KOG0292 Vesicle coat complex C 100.0 1.3E-27 2.8E-32 245.4 29.0 293 144-459 46-384 (1202)
62 KOG0277 Peroxisomal targeting 100.0 1.5E-28 3.2E-33 219.0 18.7 246 147-426 58-308 (311)
63 KOG0640 mRNA cleavage stimulat 100.0 1.2E-28 2.6E-33 225.3 18.4 289 194-496 110-425 (430)
64 KOG0281 Beta-TrCP (transducin 100.0 3.3E-29 7.2E-34 232.0 14.9 247 141-431 229-481 (499)
65 KOG0282 mRNA splicing factor [ 100.0 9.9E-29 2.2E-33 238.8 17.9 270 190-495 208-503 (503)
66 PTZ00420 coronin; Provisional 100.0 7.9E-27 1.7E-31 245.1 33.1 259 167-453 50-319 (568)
67 KOG0316 Conserved WD40 repeat- 100.0 1.1E-27 2.5E-32 211.0 22.3 261 193-495 14-275 (307)
68 KOG0278 Serine/threonine kinas 100.0 5.6E-28 1.2E-32 214.7 18.4 284 143-472 8-295 (334)
69 KOG0643 Translation initiation 100.0 6.1E-27 1.3E-31 210.2 24.8 297 143-473 4-316 (327)
70 KOG0305 Anaphase promoting com 100.0 1E-26 2.2E-31 234.4 29.0 275 154-473 182-460 (484)
71 KOG0276 Vesicle coat complex C 100.0 1.8E-27 3.9E-32 236.1 23.2 264 195-491 12-293 (794)
72 KOG0275 Conserved WD40 repeat- 100.0 4E-28 8.7E-33 222.9 17.0 287 190-512 207-496 (508)
73 PLN00181 protein SPA1-RELATED; 100.0 3.6E-26 7.8E-31 258.2 35.5 275 170-475 457-739 (793)
74 KOG0647 mRNA export protein (c 100.0 1.3E-26 2.8E-31 211.7 25.3 277 149-460 27-313 (347)
75 KOG0289 mRNA splicing factor [ 100.0 2E-26 4.4E-31 219.7 27.7 284 149-472 219-504 (506)
76 KOG0772 Uncharacterized conser 100.0 1.2E-26 2.6E-31 225.6 26.0 284 195-493 166-483 (641)
77 KOG0308 Conserved WD40 repeat- 100.0 2.7E-27 5.8E-32 236.2 21.8 288 148-460 20-317 (735)
78 KOG0299 U3 snoRNP-associated p 100.0 3.4E-26 7.3E-31 220.1 28.6 283 143-460 136-445 (479)
79 KOG0278 Serine/threonine kinas 100.0 4.6E-28 1E-32 215.2 14.2 270 193-499 11-299 (334)
80 KOG1063 RNA polymerase II elon 100.0 4.1E-26 8.9E-31 229.4 29.9 349 138-499 180-650 (764)
81 KOG0268 Sof1-like rRNA process 100.0 7.2E-28 1.6E-32 224.7 16.1 283 144-474 61-345 (433)
82 KOG1408 WD40 repeat protein [F 100.0 1.8E-26 3.9E-31 231.9 27.0 325 152-498 263-714 (1080)
83 KOG0293 WD40 repeat-containing 100.0 2.6E-27 5.7E-32 224.3 19.4 275 191-496 219-512 (519)
84 KOG0973 Histone transcription 100.0 9.4E-27 2E-31 246.2 25.5 305 145-474 9-355 (942)
85 KOG0641 WD40 repeat protein [G 100.0 7.6E-26 1.6E-30 198.1 26.5 262 138-427 78-349 (350)
86 KOG0300 WD40 repeat-containing 100.0 1.7E-26 3.7E-31 211.7 22.1 291 144-460 143-466 (481)
87 KOG0274 Cdc4 and related F-box 99.9 6.6E-26 1.4E-30 237.4 28.7 278 147-475 206-483 (537)
88 KOG0305 Anaphase promoting com 99.9 3.4E-26 7.3E-31 230.6 25.4 265 199-498 180-462 (484)
89 KOG1332 Vesicle coat complex C 99.9 1E-26 2.2E-31 206.2 18.8 258 144-427 6-286 (299)
90 KOG0264 Nucleosome remodeling 99.9 1.9E-26 4E-31 222.1 21.6 265 194-474 122-404 (422)
91 KOG1273 WD40 repeat protein [G 99.9 8.1E-26 1.7E-30 207.4 24.3 288 152-474 26-322 (405)
92 KOG1407 WD40 repeat protein [F 99.9 1.4E-25 3E-30 200.9 23.8 235 194-461 18-252 (313)
93 PTZ00421 coronin; Provisional 99.9 5.7E-25 1.2E-29 230.2 32.4 264 199-474 23-290 (493)
94 KOG0973 Histone transcription 99.9 6.2E-26 1.3E-30 240.0 24.1 265 140-430 60-358 (942)
95 KOG0310 Conserved WD40 repeat- 99.9 9.3E-26 2E-30 218.8 23.0 243 146-426 65-308 (487)
96 KOG0264 Nucleosome remodeling 99.9 2.2E-25 4.8E-30 214.8 24.1 265 145-427 120-404 (422)
97 KOG0639 Transducin-like enhanc 99.9 1.2E-25 2.5E-30 217.9 21.3 288 145-473 415-703 (705)
98 KOG1036 Mitotic spindle checkp 99.9 1.1E-24 2.4E-29 200.0 26.2 272 149-460 13-294 (323)
99 KOG0294 WD40 repeat-containing 99.9 1.4E-24 2.9E-29 199.6 26.0 248 138-429 32-283 (362)
100 KOG2055 WD40 repeat protein [G 99.9 3.8E-24 8.2E-29 206.0 28.4 289 149-473 213-511 (514)
101 KOG1539 WD repeat protein [Gen 99.9 5E-24 1.1E-28 218.6 30.1 334 141-496 194-647 (910)
102 KOG0274 Cdc4 and related F-box 99.9 1.7E-24 3.8E-29 226.7 25.9 249 142-435 241-490 (537)
103 KOG0289 mRNA splicing factor [ 99.9 3.6E-24 7.7E-29 204.5 25.4 230 198-460 221-452 (506)
104 PTZ00420 coronin; Provisional 99.9 1.3E-23 2.8E-28 220.9 32.2 236 214-474 50-293 (568)
105 KOG4328 WD40 protein [Function 99.9 4.8E-24 1E-28 205.1 26.1 302 144-472 181-493 (498)
106 KOG0302 Ribosome Assembly prot 99.9 3.2E-24 6.9E-29 201.5 23.7 253 142-408 144-426 (440)
107 KOG0301 Phospholipase A2-activ 99.9 7.9E-24 1.7E-28 213.2 27.4 281 141-474 6-288 (745)
108 KOG0283 WD40 repeat-containing 99.9 1.6E-24 3.4E-29 223.9 22.5 279 194-498 265-577 (712)
109 KOG4283 Transcription-coupled 99.9 8.9E-24 1.9E-28 192.3 24.0 297 146-474 40-365 (397)
110 KOG1274 WD40 repeat protein [G 99.9 2.3E-23 4.9E-28 216.3 30.1 274 146-461 10-291 (933)
111 KOG0269 WD40 repeat-containing 99.9 1.5E-24 3.3E-29 220.7 20.7 283 151-459 41-328 (839)
112 KOG0299 U3 snoRNP-associated p 99.9 4.1E-24 8.8E-29 205.9 22.2 235 146-409 199-444 (479)
113 KOG1446 Histone H3 (Lys4) meth 99.9 1.2E-22 2.5E-27 187.8 30.6 254 195-487 13-272 (311)
114 KOG1332 Vesicle coat complex C 99.9 3.5E-24 7.5E-29 190.2 19.6 266 191-485 6-295 (299)
115 KOG0650 WD40 repeat nucleolar 99.9 1.2E-23 2.6E-28 208.3 23.2 306 136-472 387-733 (733)
116 KOG2445 Nuclear pore complex c 99.9 5.2E-23 1.1E-27 188.6 25.1 281 144-436 8-330 (361)
117 KOG2096 WD40 repeat protein [G 99.9 6.1E-23 1.3E-27 188.8 24.0 281 192-493 82-398 (420)
118 KOG1408 WD40 repeat protein [F 99.9 6.8E-23 1.5E-27 206.3 26.5 296 154-474 329-713 (1080)
119 KOG0321 WD40 repeat-containing 99.9 3.1E-23 6.8E-28 207.0 23.6 293 161-473 64-390 (720)
120 KOG0268 Sof1-like rRNA process 99.9 3.6E-24 7.7E-29 200.2 15.9 262 193-498 63-346 (433)
121 KOG1539 WD repeat protein [Gen 99.9 7.6E-23 1.6E-27 210.0 26.4 332 152-513 162-635 (910)
122 KOG1036 Mitotic spindle checkp 99.9 1.9E-22 4.2E-27 185.3 26.3 237 195-472 12-260 (323)
123 KOG0288 WD40 repeat protein Ti 99.9 9.7E-24 2.1E-28 200.5 18.1 243 142-424 212-458 (459)
124 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 1.3E-21 2.8E-26 196.4 33.8 271 161-474 1-279 (300)
125 KOG0639 Transducin-like enhanc 99.9 1.8E-23 3.8E-28 202.8 18.9 273 194-496 417-703 (705)
126 KOG4283 Transcription-coupled 99.9 1.1E-22 2.4E-27 185.2 22.6 289 193-513 40-353 (397)
127 KOG0308 Conserved WD40 repeat- 99.9 4.6E-23 1E-27 206.2 20.1 246 201-474 29-285 (735)
128 KOG2055 WD40 repeat protein [G 99.9 7.1E-23 1.5E-27 197.3 20.1 273 196-496 213-511 (514)
129 KOG1063 RNA polymerase II elon 99.9 8.5E-22 1.8E-26 198.5 27.5 309 142-476 260-650 (764)
130 KOG2919 Guanine nucleotide-bin 99.9 1.5E-21 3.3E-26 180.1 26.8 285 152-460 52-360 (406)
131 KOG0646 WD40 repeat protein [G 99.9 1.2E-22 2.6E-27 196.2 20.0 241 149-407 81-336 (476)
132 KOG2106 Uncharacterized conser 99.9 7.4E-22 1.6E-26 192.0 25.6 248 149-427 246-521 (626)
133 KOG2106 Uncharacterized conser 99.9 1.4E-20 3.1E-25 183.1 33.2 314 139-495 144-519 (626)
134 KOG0267 Microtubule severing p 99.9 8E-24 1.7E-28 213.9 11.0 258 159-461 2-259 (825)
135 KOG0294 WD40 repeat-containing 99.9 1.2E-21 2.5E-26 180.4 24.1 258 210-499 3-283 (362)
136 KOG0267 Microtubule severing p 99.9 1.1E-23 2.5E-28 212.8 11.1 241 138-409 17-257 (825)
137 KOG4378 Nuclear protein COP1 [ 99.9 4E-22 8.7E-27 193.3 21.2 267 151-452 36-305 (673)
138 KOG1445 Tumor-specific antigen 99.9 5.9E-22 1.3E-26 197.1 22.5 190 301-500 629-847 (1012)
139 KOG0647 mRNA export protein (c 99.9 2.6E-21 5.6E-26 177.2 24.9 242 193-472 24-279 (347)
140 KOG4328 WD40 protein [Function 99.9 5.6E-22 1.2E-26 191.0 21.2 253 195-473 185-449 (498)
141 KOG2048 WD40 repeat protein [G 99.9 3.1E-20 6.7E-25 187.2 32.9 336 141-500 60-508 (691)
142 KOG1034 Transcriptional repres 99.9 7.8E-22 1.7E-26 182.5 19.7 299 144-472 33-381 (385)
143 KOG0300 WD40 repeat-containing 99.9 1.3E-21 2.9E-26 179.7 20.6 249 192-473 144-427 (481)
144 KOG0269 WD40 repeat-containing 99.9 4.2E-22 9.1E-27 203.1 19.1 275 199-496 42-339 (839)
145 KOG1274 WD40 repeat protein [G 99.9 1.1E-20 2.5E-25 196.4 30.0 244 194-474 11-262 (933)
146 KOG0270 WD40 repeat-containing 99.9 1.5E-21 3.3E-26 187.5 20.6 244 161-433 192-455 (463)
147 KOG2445 Nuclear pore complex c 99.9 2.3E-20 4.9E-25 171.4 26.7 281 190-496 7-317 (361)
148 KOG0307 Vesicle coat complex C 99.9 2.8E-22 6E-27 213.4 16.3 292 154-474 11-327 (1049)
149 KOG0302 Ribosome Assembly prot 99.9 2.5E-21 5.5E-26 182.1 20.6 253 194-460 149-428 (440)
150 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 1.1E-19 2.4E-24 182.3 32.6 263 144-450 26-300 (300)
151 KOG0301 Phospholipase A2-activ 99.9 1.1E-20 2.4E-25 190.7 23.3 236 143-427 51-288 (745)
152 KOG0646 WD40 repeat protein [G 99.9 1.2E-20 2.6E-25 182.4 21.2 266 162-458 51-337 (476)
153 KOG2048 WD40 repeat protein [G 99.9 2.1E-19 4.6E-24 181.2 30.3 279 149-461 25-310 (691)
154 KOG1007 WD repeat protein TSSC 99.9 8.2E-20 1.8E-24 166.2 23.7 279 161-460 26-350 (370)
155 KOG0270 WD40 repeat-containing 99.9 7.9E-20 1.7E-24 175.8 23.0 253 199-474 176-449 (463)
156 KOG1538 Uncharacterized conser 99.9 1.1E-19 2.4E-24 182.1 23.3 278 151-477 14-296 (1081)
157 KOG0321 WD40 repeat-containing 99.9 4.1E-20 8.9E-25 184.8 20.2 270 145-429 96-393 (720)
158 KOG4227 WD40 repeat protein [G 99.8 2.2E-19 4.8E-24 169.5 22.6 303 144-475 51-388 (609)
159 KOG1273 WD40 repeat protein [G 99.8 1.3E-19 2.9E-24 166.7 20.6 242 199-474 26-280 (405)
160 KOG1009 Chromatin assembly com 99.8 3.1E-19 6.8E-24 169.9 23.0 300 143-461 8-363 (434)
161 KOG1188 WD40 repeat protein [G 99.8 1.2E-19 2.5E-24 169.2 19.4 273 209-505 41-355 (376)
162 KOG1009 Chromatin assembly com 99.8 5.6E-19 1.2E-23 168.2 24.1 297 196-501 13-376 (434)
163 KOG1007 WD repeat protein TSSC 99.8 5.4E-19 1.2E-23 160.9 21.7 258 144-427 58-361 (370)
164 KOG0307 Vesicle coat complex C 99.8 7.1E-20 1.5E-24 195.2 15.7 253 149-430 64-330 (1049)
165 KOG0322 G-protein beta subunit 99.8 3.5E-19 7.5E-24 160.3 17.5 300 137-473 2-322 (323)
166 KOG0650 WD40 repeat nucleolar 99.8 1.3E-18 2.8E-23 172.9 21.5 244 191-462 395-672 (733)
167 KOG1334 WD40 repeat protein [G 99.8 2.8E-19 6.1E-24 173.7 16.2 306 143-473 136-465 (559)
168 KOG4378 Nuclear protein COP1 [ 99.8 4.8E-19 1E-23 172.1 17.6 228 151-407 81-309 (673)
169 KOG1517 Guanine nucleotide bin 99.8 6.4E-18 1.4E-22 177.9 25.7 303 148-474 1063-1381(1387)
170 KOG0303 Actin-binding protein 99.8 4.7E-18 1E-22 161.1 22.3 240 190-452 75-321 (472)
171 KOG1034 Transcriptional repres 99.8 3.2E-18 6.9E-23 158.7 18.7 257 147-427 87-383 (385)
172 KOG1310 WD40 repeat protein [G 99.8 1.3E-17 2.8E-22 164.2 23.6 234 139-378 40-306 (758)
173 COG2319 FOG: WD40 repeat [Gene 99.8 4.3E-16 9.4E-21 163.2 37.2 295 143-476 59-361 (466)
174 KOG1524 WD40 repeat-containing 99.8 1.1E-17 2.3E-22 164.3 22.3 295 147-496 12-310 (737)
175 PRK11028 6-phosphogluconolacto 99.8 1.2E-16 2.6E-21 162.6 30.9 259 149-427 34-304 (330)
176 PRK11028 6-phosphogluconolacto 99.8 7.6E-16 1.7E-20 156.7 33.7 282 164-474 5-304 (330)
177 KOG0303 Actin-binding protein 99.8 2.3E-17 4.9E-22 156.5 20.6 218 243-474 74-294 (472)
178 KOG2919 Guanine nucleotide-bin 99.8 2E-17 4.4E-22 153.0 18.8 242 150-409 105-359 (406)
179 KOG1587 Cytoplasmic dynein int 99.8 1.1E-16 2.3E-21 166.9 26.6 277 138-428 232-517 (555)
180 KOG1538 Uncharacterized conser 99.8 2.1E-17 4.6E-22 165.9 20.3 262 196-496 12-292 (1081)
181 KOG1523 Actin-related protein 99.8 1.1E-16 2.3E-21 148.4 23.2 233 197-451 11-260 (361)
182 KOG0642 Cell-cycle nuclear pro 99.8 8.1E-18 1.8E-22 166.7 16.7 275 140-436 285-570 (577)
183 KOG0290 Conserved WD40 repeat- 99.8 5.1E-17 1.1E-21 148.3 19.3 243 147-409 94-355 (364)
184 KOG0644 Uncharacterized conser 99.8 2.3E-18 5.1E-23 176.9 11.5 252 144-432 185-473 (1113)
185 KOG1240 Protein kinase contain 99.8 2.7E-16 5.9E-21 168.4 26.8 336 142-495 1041-1431(1431)
186 KOG0290 Conserved WD40 repeat- 99.8 1.5E-16 3.2E-21 145.4 21.0 259 198-478 46-322 (364)
187 KOG1445 Tumor-specific antigen 99.8 3.8E-17 8.3E-22 163.2 18.6 251 157-430 587-847 (1012)
188 KOG1587 Cytoplasmic dynein int 99.8 7.9E-16 1.7E-20 160.5 29.0 240 171-429 222-474 (555)
189 KOG0642 Cell-cycle nuclear pro 99.7 1.9E-17 4.1E-22 164.1 15.2 247 245-500 289-564 (577)
190 COG2319 FOG: WD40 repeat [Gene 99.7 1.5E-14 3.2E-19 151.5 37.7 292 140-475 146-443 (466)
191 KOG2110 Uncharacterized conser 99.7 1.1E-14 2.5E-19 137.6 31.8 241 149-429 5-250 (391)
192 KOG0649 WD40 repeat protein [G 99.7 6.6E-16 1.4E-20 137.7 21.2 244 199-472 13-272 (325)
193 KOG4497 Uncharacterized conser 99.7 1.5E-15 3.2E-20 141.1 22.5 277 155-474 14-391 (447)
194 KOG0771 Prolactin regulatory e 99.7 1.5E-16 3.2E-21 153.0 15.9 204 153-376 148-355 (398)
195 KOG1188 WD40 repeat protein [G 99.7 7.3E-16 1.6E-20 144.0 19.7 278 162-473 41-345 (376)
196 KOG1963 WD40 repeat protein [G 99.7 1.2E-14 2.6E-19 151.8 30.8 323 152-498 163-539 (792)
197 KOG1963 WD40 repeat protein [G 99.7 9.5E-15 2.1E-19 152.5 29.1 331 146-503 202-589 (792)
198 KOG0771 Prolactin regulatory e 99.7 2.5E-15 5.4E-20 144.6 21.9 198 254-474 148-354 (398)
199 PRK01742 tolB translocation pr 99.7 1.2E-15 2.7E-20 160.1 21.8 237 170-452 183-427 (429)
200 KOG2111 Uncharacterized conser 99.7 5.7E-14 1.2E-18 130.5 29.1 239 153-429 9-258 (346)
201 KOG4227 WD40 repeat protein [G 99.7 2.6E-15 5.7E-20 142.2 19.8 283 194-497 54-387 (609)
202 KOG0649 WD40 repeat protein [G 99.7 2.4E-14 5.2E-19 127.8 24.7 279 150-460 11-305 (325)
203 KOG1272 WD40-repeat-containing 99.7 2.3E-16 4.9E-21 152.8 12.6 267 149-460 129-399 (545)
204 KOG1523 Actin-related protein 99.7 5.5E-15 1.2E-19 137.1 20.5 247 145-408 6-267 (361)
205 KOG1517 Guanine nucleotide bin 99.7 4.3E-15 9.2E-20 156.9 22.3 255 150-430 1110-1384(1387)
206 KOG0644 Uncharacterized conser 99.7 6E-16 1.3E-20 159.5 15.2 335 194-581 188-561 (1113)
207 KOG2139 WD40 repeat protein [G 99.7 3.3E-14 7.1E-19 133.9 25.4 269 149-435 98-391 (445)
208 KOG1354 Serine/threonine prote 99.7 1.7E-14 3.6E-19 135.0 22.5 272 148-429 24-361 (433)
209 KOG1524 WD40 repeat-containing 99.7 3.1E-15 6.6E-20 147.2 17.7 207 162-423 76-282 (737)
210 KOG2394 WD40 protein DMR-N9 [G 99.7 1.4E-14 3E-19 142.9 21.4 255 151-450 125-384 (636)
211 KOG2139 WD40 repeat protein [G 99.7 5.9E-14 1.3E-18 132.2 24.6 236 198-461 100-366 (445)
212 PRK01742 tolB translocation pr 99.6 1.3E-14 2.7E-19 152.5 21.6 223 143-401 197-426 (429)
213 PRK03629 tolB translocation pr 99.6 1.1E-13 2.3E-18 145.1 27.4 239 171-451 179-428 (429)
214 KOG2321 WD40 repeat protein [G 99.6 7.8E-14 1.7E-18 138.7 24.0 286 147-478 49-348 (703)
215 KOG3881 Uncharacterized conser 99.6 5.3E-14 1.2E-18 134.0 21.1 277 150-452 56-343 (412)
216 KOG4497 Uncharacterized conser 99.6 4.7E-14 1E-18 131.2 18.5 272 145-461 87-423 (447)
217 PRK04922 tolB translocation pr 99.6 1.9E-13 4E-18 143.9 24.4 238 171-450 184-432 (433)
218 PRK05137 tolB translocation pr 99.6 6.2E-13 1.4E-17 140.2 27.3 241 171-451 182-433 (435)
219 KOG1310 WD40 repeat protein [G 99.6 5.5E-14 1.2E-18 138.9 17.1 228 191-436 45-312 (758)
220 PRK02889 tolB translocation pr 99.6 6.1E-13 1.3E-17 139.6 24.6 242 171-451 176-425 (427)
221 PF10282 Lactonase: Lactonase, 99.6 2.3E-11 5.1E-16 123.9 34.4 291 150-448 37-345 (345)
222 KOG1334 WD40 repeat protein [G 99.5 1.4E-13 3E-18 134.5 16.5 289 192-506 138-475 (559)
223 KOG1240 Protein kinase contain 99.5 1.4E-12 3E-17 140.5 25.5 280 195-500 1047-1337(1431)
224 KOG0322 G-protein beta subunit 99.5 3.3E-13 7.1E-18 122.1 16.0 259 147-426 54-322 (323)
225 PF08662 eIF2A: Eukaryotic tra 99.5 2E-12 4.4E-17 119.5 20.3 166 254-437 9-188 (194)
226 PRK02889 tolB translocation pr 99.5 4.8E-12 1E-16 132.8 25.2 221 218-474 176-401 (427)
227 PF10282 Lactonase: Lactonase, 99.5 8.6E-11 1.9E-15 119.8 33.4 299 164-485 2-332 (345)
228 PF08662 eIF2A: Eukaryotic tra 99.5 3.1E-12 6.8E-17 118.2 20.1 163 303-485 9-186 (194)
229 KOG2110 Uncharacterized conser 99.5 2.6E-11 5.7E-16 115.1 26.3 235 198-475 7-249 (391)
230 KOG1272 WD40-repeat-containing 99.5 9.5E-14 2.1E-18 134.8 10.2 233 198-475 131-363 (545)
231 PF02239 Cytochrom_D1: Cytochr 99.5 4.5E-11 9.8E-16 121.7 30.1 286 162-474 6-347 (369)
232 KOG2394 WD40 protein DMR-N9 [G 99.5 6.9E-13 1.5E-17 131.1 16.1 184 159-354 183-383 (636)
233 PRK03629 tolB translocation pr 99.5 8.3E-12 1.8E-16 130.9 24.8 222 143-400 192-427 (429)
234 PRK04922 tolB translocation pr 99.5 1.4E-11 2.9E-16 129.8 25.7 207 218-461 184-399 (433)
235 PF02239 Cytochrom_D1: Cytochr 99.5 1.1E-10 2.3E-15 118.9 31.0 270 144-437 31-357 (369)
236 KOG2315 Predicted translation 99.5 1.8E-10 4E-15 115.1 30.9 302 149-483 34-395 (566)
237 KOG1354 Serine/threonine prote 99.5 1.2E-11 2.6E-16 116.2 21.1 263 197-474 26-359 (433)
238 TIGR02800 propeller_TolB tol-p 99.5 2.1E-11 4.6E-16 128.5 25.8 236 171-448 170-416 (417)
239 PRK05137 tolB translocation pr 99.4 3.7E-11 8.1E-16 126.7 26.6 207 218-461 182-397 (435)
240 KOG2321 WD40 repeat protein [G 99.4 1.9E-11 4.1E-16 122.0 21.0 241 197-474 52-302 (703)
241 KOG1409 Uncharacterized conser 99.4 1.5E-11 3.3E-16 115.6 18.8 254 144-429 19-272 (404)
242 KOG3881 Uncharacterized conser 99.4 3.3E-11 7.1E-16 115.3 20.9 247 197-474 56-320 (412)
243 PRK04792 tolB translocation pr 99.4 7.6E-11 1.7E-15 124.2 26.0 238 172-451 199-447 (448)
244 COG2706 3-carboxymuconate cycl 99.4 1.3E-09 2.9E-14 104.1 30.9 284 145-449 35-345 (346)
245 PRK00178 tolB translocation pr 99.4 2.4E-10 5.3E-15 120.7 27.2 238 172-451 180-428 (430)
246 PRK01029 tolB translocation pr 99.4 6.2E-10 1.3E-14 116.4 28.4 245 171-452 165-426 (428)
247 TIGR02800 propeller_TolB tol-p 99.4 2.3E-10 4.9E-15 120.6 25.2 204 218-461 170-385 (417)
248 COG2706 3-carboxymuconate cycl 99.3 8.3E-09 1.8E-13 98.7 32.6 283 170-475 15-322 (346)
249 KOG0309 Conserved WD40 repeat- 99.3 2.2E-11 4.7E-16 124.8 15.6 274 148-452 23-311 (1081)
250 KOG4547 WD40 repeat-containing 99.3 1.2E-10 2.6E-15 117.3 19.4 191 262-475 4-221 (541)
251 KOG2111 Uncharacterized conser 99.3 1.8E-09 4E-14 100.8 25.2 245 199-481 8-263 (346)
252 KOG2041 WD40 repeat protein [G 99.3 6E-10 1.3E-14 114.0 23.5 287 150-460 15-328 (1189)
253 PRK00178 tolB translocation pr 99.3 1.3E-09 2.7E-14 115.2 27.3 217 219-474 180-404 (430)
254 COG5170 CDC55 Serine/threonine 99.3 1.2E-10 2.5E-15 108.1 16.3 268 148-425 25-365 (460)
255 COG5354 Uncharacterized protei 99.3 4.4E-09 9.4E-14 104.2 27.6 301 150-489 72-421 (561)
256 COG5354 Uncharacterized protei 99.3 1.2E-09 2.5E-14 108.2 23.3 305 148-497 31-395 (561)
257 KOG2314 Translation initiation 99.3 3.1E-09 6.8E-14 106.0 26.4 298 153-490 214-560 (698)
258 KOG0974 WD-repeat protein WDR6 99.3 1E-10 2.2E-15 124.9 16.7 195 155-375 93-288 (967)
259 PRK01029 tolB translocation pr 99.3 4.5E-09 9.7E-14 109.9 28.5 215 218-461 165-391 (428)
260 KOG0280 Uncharacterized conser 99.3 1.5E-09 3.4E-14 100.2 21.4 223 169-409 44-274 (339)
261 PRK04792 tolB translocation pr 99.2 2.2E-09 4.7E-14 113.2 25.5 207 219-461 199-413 (448)
262 KOG4532 WD40-like repeat conta 99.2 2E-09 4.4E-14 98.1 21.3 206 207-438 83-293 (344)
263 KOG4547 WD40 repeat-containing 99.2 1.5E-09 3.3E-14 109.5 21.9 194 158-376 2-221 (541)
264 KOG2314 Translation initiation 99.2 4.6E-09 1E-13 104.9 24.6 278 151-460 251-557 (698)
265 KOG1064 RAVE (regulator of V-A 99.2 8.1E-11 1.7E-15 131.3 13.3 197 143-378 2202-2401(2439)
266 KOG0280 Uncharacterized conser 99.2 1.8E-09 4E-14 99.7 19.6 254 149-428 69-334 (339)
267 COG4946 Uncharacterized protei 99.2 3.1E-08 6.6E-13 97.3 28.7 236 202-461 272-509 (668)
268 COG4946 Uncharacterized protei 99.2 1.3E-07 2.8E-12 93.0 31.0 159 310-487 331-508 (668)
269 KOG2041 WD40 repeat protein [G 99.2 2.4E-09 5.1E-14 109.7 19.8 247 195-462 13-280 (1189)
270 KOG0974 WD-repeat protein WDR6 99.2 2.3E-09 4.9E-14 114.8 20.5 187 264-475 100-289 (967)
271 PLN02919 haloacid dehalogenase 99.2 2.3E-08 5.1E-13 115.0 30.1 266 153-431 571-892 (1057)
272 KOG2315 Predicted translation 99.1 4.7E-09 1E-13 105.3 20.3 261 153-452 129-412 (566)
273 TIGR02658 TTQ_MADH_Hv methylam 99.1 7.1E-08 1.5E-12 96.1 28.7 247 157-435 53-338 (352)
274 TIGR02658 TTQ_MADH_Hv methylam 99.1 1.6E-07 3.4E-12 93.7 30.5 277 171-474 27-330 (352)
275 KOG0309 Conserved WD40 repeat- 99.1 1.7E-10 3.7E-15 118.4 9.5 216 141-376 106-340 (1081)
276 PF04762 IKI3: IKI3 family; I 99.1 4.9E-08 1.1E-12 110.3 30.1 273 148-460 74-369 (928)
277 PLN02919 haloacid dehalogenase 99.1 5.6E-08 1.2E-12 111.9 29.9 258 200-474 571-888 (1057)
278 PF15492 Nbas_N: Neuroblastoma 99.1 1.6E-07 3.4E-12 87.5 25.7 251 155-437 3-269 (282)
279 PF08450 SGL: SMP-30/Gluconola 99.0 7.4E-07 1.6E-11 86.5 30.9 226 201-460 4-245 (246)
280 KOG1064 RAVE (regulator of V-A 99.0 9.7E-10 2.1E-14 122.9 11.1 191 247-474 2205-2398(2439)
281 KOG4190 Uncharacterized conser 99.0 2.9E-09 6.3E-14 106.0 12.2 289 142-460 728-1026(1034)
282 COG5170 CDC55 Serine/threonine 99.0 3.6E-08 7.9E-13 91.8 18.0 248 196-460 26-357 (460)
283 PRK04043 tolB translocation pr 99.0 4.1E-07 8.9E-12 94.6 28.3 200 252-475 189-399 (419)
284 KOG2695 WD40 repeat protein [G 99.0 1.8E-09 3.9E-14 101.8 8.6 167 257-438 218-387 (425)
285 KOG1409 Uncharacterized conser 98.9 1.2E-07 2.6E-12 89.8 18.6 233 243-498 17-271 (404)
286 PF04762 IKI3: IKI3 family; I 98.9 5.5E-06 1.2E-10 94.0 35.2 287 148-459 208-553 (928)
287 KOG1832 HIV-1 Vpr-binding prot 98.9 1.4E-09 3.1E-14 113.7 5.8 217 195-459 1100-1320(1516)
288 KOG4532 WD40-like repeat conta 98.9 5.2E-07 1.1E-11 82.7 21.0 227 161-409 84-321 (344)
289 KOG0882 Cyclophilin-related pe 98.9 4.4E-08 9.5E-13 95.7 14.9 263 147-436 7-314 (558)
290 KOG3914 WD repeat protein WDR4 98.9 5.5E-08 1.2E-12 94.1 14.3 163 199-380 65-228 (390)
291 KOG4190 Uncharacterized conser 98.8 3.6E-09 7.7E-14 105.3 5.8 179 243-435 728-914 (1034)
292 PRK04043 tolB translocation pr 98.8 2.2E-06 4.7E-11 89.3 26.7 196 198-429 189-402 (419)
293 KOG1912 WD40 repeat protein [G 98.8 4.9E-08 1.1E-12 101.3 14.0 320 155-497 236-656 (1062)
294 KOG1912 WD40 repeat protein [G 98.8 1.3E-06 2.9E-11 91.0 24.1 212 142-375 48-304 (1062)
295 KOG1920 IkappaB kinase complex 98.8 3.8E-06 8.3E-11 92.2 27.6 237 197-459 69-354 (1265)
296 KOG1832 HIV-1 Vpr-binding prot 98.8 1.6E-08 3.4E-13 106.2 7.6 223 143-408 1095-1319(1516)
297 PF08450 SGL: SMP-30/Gluconola 98.7 1.8E-05 3.9E-10 76.7 28.5 227 154-409 4-244 (246)
298 KOG4714 Nucleoporin [Nuclear s 98.7 2.7E-07 5.9E-12 84.2 13.9 151 204-376 97-255 (319)
299 KOG3914 WD repeat protein WDR4 98.7 1.8E-07 3.8E-12 90.6 13.3 166 256-437 68-233 (390)
300 PF15492 Nbas_N: Neuroblastoma 98.7 2.5E-06 5.3E-11 79.7 19.3 201 151-378 45-262 (282)
301 KOG0882 Cyclophilin-related pe 98.7 1.8E-07 3.9E-12 91.6 12.0 207 204-435 16-239 (558)
302 KOG2114 Vacuolar assembly/sort 98.7 7.4E-06 1.6E-10 86.8 23.6 213 202-437 29-253 (933)
303 KOG4714 Nucleoporin [Nuclear s 98.6 3.3E-07 7.2E-12 83.6 10.8 207 253-485 39-261 (319)
304 PF07433 DUF1513: Protein of u 98.6 7.5E-05 1.6E-09 72.1 26.2 221 199-452 7-269 (305)
305 TIGR03300 assembly_YfgL outer 98.6 9.3E-05 2E-09 76.8 29.3 242 160-438 104-349 (377)
306 TIGR03300 assembly_YfgL outer 98.6 4.6E-05 1E-09 79.0 26.9 230 161-435 65-305 (377)
307 PF00400 WD40: WD domain, G-be 98.6 1.9E-07 4.2E-12 61.4 5.9 36 142-177 4-39 (39)
308 KOG3617 WD40 and TPR repeat-co 98.5 2E-06 4.4E-11 90.4 15.4 110 152-281 18-131 (1416)
309 KOG1920 IkappaB kinase complex 98.5 6.8E-05 1.5E-09 82.7 26.7 214 149-378 68-325 (1265)
310 KOG2066 Vacuolar assembly/sort 98.5 4.9E-06 1.1E-10 87.6 16.2 186 148-375 38-233 (846)
311 KOG1645 RING-finger-containing 98.5 3.7E-05 8.1E-10 74.8 20.9 246 191-472 188-459 (463)
312 PF07433 DUF1513: Protein of u 98.5 6.2E-05 1.3E-09 72.7 22.4 214 254-483 8-253 (305)
313 PF11768 DUF3312: Protein of u 98.4 0.00012 2.7E-09 75.3 25.0 117 253-378 208-332 (545)
314 PF00400 WD40: WD domain, G-be 98.4 6.5E-07 1.4E-11 58.9 5.4 38 336-373 2-39 (39)
315 KOG1008 Uncharacterized conser 98.4 3.4E-07 7.3E-12 93.6 5.1 231 199-452 59-315 (783)
316 KOG1275 PAB-dependent poly(A) 98.4 1.2E-05 2.6E-10 85.6 16.5 180 264-472 148-340 (1118)
317 PF06433 Me-amine-dh_H: Methyl 98.4 0.00015 3.2E-09 71.0 22.5 256 154-437 40-330 (342)
318 PF13360 PQQ_2: PQQ-like domai 98.4 0.00028 6.1E-09 67.9 25.0 224 170-433 2-236 (238)
319 PRK02888 nitrous-oxide reducta 98.3 0.00018 3.8E-09 76.0 23.3 112 308-428 285-405 (635)
320 PF11768 DUF3312: Protein of u 98.3 0.0016 3.5E-08 67.3 29.5 124 348-485 208-340 (545)
321 PF08553 VID27: VID27 cytoplas 98.3 0.00018 4E-09 78.7 23.9 140 216-374 502-646 (794)
322 KOG3621 WD40 repeat-containing 98.3 7E-05 1.5E-09 78.1 19.1 165 196-375 33-197 (726)
323 KOG2114 Vacuolar assembly/sort 98.3 0.00016 3.4E-09 77.1 21.7 211 151-376 27-244 (933)
324 PF13360 PQQ_2: PQQ-like domai 98.3 9.3E-05 2E-09 71.3 19.0 212 272-504 2-237 (238)
325 PRK11138 outer membrane biogen 98.3 0.0016 3.5E-08 67.9 29.5 260 161-460 120-384 (394)
326 KOG2695 WD40 repeat protein [G 98.2 4.8E-06 1E-10 79.2 9.2 161 304-488 216-387 (425)
327 KOG1008 Uncharacterized conser 98.2 4.8E-07 1E-11 92.5 2.6 208 250-475 56-276 (783)
328 PF00930 DPPIV_N: Dipeptidyl p 98.2 0.00048 1E-08 70.5 23.9 287 158-460 1-347 (353)
329 KOG1275 PAB-dependent poly(A) 98.2 3.3E-05 7.2E-10 82.4 14.8 184 207-425 146-340 (1118)
330 KOG2066 Vacuolar assembly/sort 98.2 7.8E-05 1.7E-09 78.8 17.1 167 141-330 50-234 (846)
331 PRK02888 nitrous-oxide reducta 98.2 0.00031 6.7E-09 74.2 21.1 93 367-474 296-404 (635)
332 PF08596 Lgl_C: Lethal giant l 98.2 0.00017 3.7E-09 74.0 19.0 249 198-458 3-324 (395)
333 KOG3617 WD40 and TPR repeat-co 98.1 2.6E-05 5.6E-10 82.4 12.8 109 254-375 19-131 (1416)
334 KOG1645 RING-finger-containing 98.1 6.3E-05 1.4E-09 73.3 14.3 166 275-460 175-350 (463)
335 PRK11138 outer membrane biogen 98.0 0.0034 7.5E-08 65.4 26.8 236 161-435 69-320 (394)
336 COG0823 TolB Periplasmic compo 98.0 0.00071 1.5E-08 70.2 20.8 185 196-409 192-388 (425)
337 PF04841 Vps16_N: Vps16, N-ter 98.0 0.0048 1E-07 64.2 26.6 200 219-452 62-271 (410)
338 PF04053 Coatomer_WDAD: Coatom 98.0 0.0027 5.8E-08 66.2 23.7 164 198-401 34-207 (443)
339 PF08553 VID27: VID27 cytoplas 97.9 0.00081 1.8E-08 73.8 20.3 150 258-426 488-646 (794)
340 PF00780 CNH: CNH domain; Int 97.9 0.014 3.1E-07 57.5 28.0 244 159-437 5-265 (275)
341 COG0823 TolB Periplasmic compo 97.9 0.0016 3.4E-08 67.7 20.0 189 248-460 190-389 (425)
342 KOG3621 WD40 repeat-containing 97.9 0.00021 4.5E-09 74.7 13.3 113 257-376 40-155 (726)
343 PF06977 SdiA-regulated: SdiA- 97.8 0.0049 1.1E-07 58.8 21.3 200 246-458 17-239 (248)
344 PF08596 Lgl_C: Lethal giant l 97.8 0.01 2.3E-07 61.0 24.7 250 151-409 3-325 (395)
345 PF14583 Pectate_lyase22: Olig 97.8 0.013 2.7E-07 58.8 23.9 282 156-473 42-380 (386)
346 COG3386 Gluconolactonase [Carb 97.8 0.016 3.6E-07 57.3 24.7 226 203-461 31-276 (307)
347 COG3391 Uncharacterized conser 97.8 0.0097 2.1E-07 61.5 23.7 200 253-473 76-282 (381)
348 PF14583 Pectate_lyase22: Olig 97.7 0.038 8.3E-07 55.4 26.1 229 202-460 41-301 (386)
349 PF02897 Peptidase_S9_N: Proly 97.7 0.048 1E-06 57.3 28.4 241 199-461 126-391 (414)
350 PF00930 DPPIV_N: Dipeptidyl p 97.7 0.021 4.5E-07 58.6 24.9 249 149-409 42-346 (353)
351 KOG3630 Nuclear pore complex, 97.7 0.00057 1.2E-08 75.1 13.6 202 153-363 45-261 (1405)
352 PF04841 Vps16_N: Vps16, N-ter 97.7 0.078 1.7E-06 55.3 29.1 204 172-401 62-270 (410)
353 PF03178 CPSF_A: CPSF A subuni 97.6 0.01 2.2E-07 60.0 21.6 146 263-427 42-202 (321)
354 KOG1897 Damage-specific DNA bi 97.6 0.058 1.3E-06 59.3 27.6 285 149-460 530-888 (1096)
355 COG3391 Uncharacterized conser 97.6 0.1 2.2E-06 53.9 28.7 264 151-451 32-309 (381)
356 PF06977 SdiA-regulated: SdiA- 97.6 0.015 3.3E-07 55.5 20.5 216 144-372 16-247 (248)
357 PF14655 RAB3GAP2_N: Rab3 GTPa 97.6 0.034 7.5E-07 57.1 23.9 86 344-440 306-411 (415)
358 PF04053 Coatomer_WDAD: Coatom 97.5 0.0095 2.1E-07 62.2 19.7 184 145-371 28-219 (443)
359 cd00216 PQQ_DH Dehydrogenases 97.5 0.064 1.4E-06 57.6 26.5 203 161-379 61-323 (488)
360 PF05694 SBP56: 56kDa selenium 97.5 0.021 4.5E-07 57.8 19.9 237 160-410 86-393 (461)
361 COG3490 Uncharacterized protei 97.4 0.014 3E-07 55.0 17.3 104 254-364 71-180 (366)
362 KOG2395 Protein involved in va 97.4 0.01 2.3E-07 60.4 17.2 205 198-426 278-499 (644)
363 KOG2395 Protein involved in va 97.4 0.011 2.3E-07 60.3 16.7 150 207-375 344-500 (644)
364 KOG4649 PQQ (pyrrolo-quinoline 97.3 0.048 1E-06 50.8 19.0 136 258-408 18-154 (354)
365 PF07995 GSDH: Glucose / Sorbo 97.3 0.071 1.5E-06 53.9 22.4 253 151-422 3-330 (331)
366 smart00320 WD40 WD40 repeats. 97.3 0.0007 1.5E-08 43.0 5.2 36 142-177 5-40 (40)
367 PF02897 Peptidase_S9_N: Proly 97.2 0.17 3.6E-06 53.2 24.8 196 250-460 123-344 (414)
368 KOG4640 Anaphase-promoting com 97.2 0.002 4.3E-08 66.9 9.6 94 346-450 21-115 (665)
369 KOG4640 Anaphase-promoting com 97.2 0.002 4.4E-08 66.8 9.5 92 301-399 22-114 (665)
370 PF00780 CNH: CNH domain; Int 97.1 0.15 3.2E-06 50.2 22.6 154 263-435 7-173 (275)
371 PF06433 Me-amine-dh_H: Methyl 97.1 0.34 7.4E-06 47.9 24.8 263 199-485 38-328 (342)
372 COG3386 Gluconolactonase [Carb 97.1 0.081 1.8E-06 52.4 19.6 192 152-364 68-274 (307)
373 smart00320 WD40 WD40 repeats. 97.1 0.0013 2.8E-08 41.8 4.8 37 337-373 4-40 (40)
374 PF03178 CPSF_A: CPSF A subuni 97.0 0.12 2.7E-06 52.1 21.1 145 208-375 42-202 (321)
375 PF14783 BBS2_Mid: Ciliary BBS 97.0 0.03 6.6E-07 45.4 12.5 101 152-276 2-109 (111)
376 PF15390 DUF4613: Domain of un 97.0 0.57 1.2E-05 49.1 24.6 125 147-282 54-187 (671)
377 PRK13616 lipoprotein LpqB; Pro 96.9 0.074 1.6E-06 57.9 18.9 202 149-371 349-564 (591)
378 PF14783 BBS2_Mid: Ciliary BBS 96.9 0.064 1.4E-06 43.6 13.8 96 258-370 10-109 (111)
379 PF14870 PSII_BNR: Photosynthe 96.9 0.55 1.2E-05 46.4 31.6 275 148-459 15-294 (302)
380 KOG4649 PQQ (pyrrolo-quinoline 96.8 0.1 2.3E-06 48.6 16.2 132 311-459 23-154 (354)
381 cd00216 PQQ_DH Dehydrogenases 96.8 0.99 2.2E-05 48.5 26.7 208 208-437 61-329 (488)
382 KOG2079 Vacuolar assembly/sort 96.7 0.0069 1.5E-07 66.7 9.4 107 356-477 98-206 (1206)
383 KOG4499 Ca2+-binding protein R 96.7 0.42 9.2E-06 44.1 19.0 146 301-460 110-274 (310)
384 KOG2444 WD40 repeat protein [G 96.7 0.0038 8.3E-08 56.9 6.1 105 264-376 71-178 (238)
385 PRK13616 lipoprotein LpqB; Pro 96.7 0.2 4.4E-06 54.5 20.3 184 197-400 350-550 (591)
386 KOG1897 Damage-specific DNA bi 96.6 1.5 3.3E-05 48.8 25.5 237 199-460 490-733 (1096)
387 COG3490 Uncharacterized protei 96.5 0.77 1.7E-05 43.7 19.7 149 303-457 71-242 (366)
388 PF05096 Glu_cyclase_2: Glutam 96.4 0.56 1.2E-05 44.8 18.9 185 253-460 47-250 (264)
389 COG3204 Uncharacterized protei 96.4 0.95 2.1E-05 43.5 20.1 178 146-331 82-265 (316)
390 KOG2079 Vacuolar assembly/sort 96.4 0.013 2.8E-07 64.7 8.9 96 310-409 98-194 (1206)
391 TIGR02604 Piru_Ver_Nterm putat 96.3 1.1 2.5E-05 46.0 22.8 159 150-320 14-204 (367)
392 PRK10115 protease 2; Provision 96.3 2.6 5.7E-05 47.2 31.6 115 198-329 128-255 (686)
393 TIGR03075 PQQ_enz_alc_DH PQQ-d 96.3 2.2 4.7E-05 46.2 28.4 31 401-438 471-501 (527)
394 TIGR02604 Piru_Ver_Nterm putat 96.2 0.34 7.3E-06 49.9 18.1 107 301-409 15-142 (367)
395 PHA02713 hypothetical protein; 96.2 0.55 1.2E-05 51.2 20.5 148 264-431 353-537 (557)
396 KOG3630 Nuclear pore complex, 96.2 0.098 2.1E-06 58.4 14.0 151 253-409 103-262 (1405)
397 PHA02713 hypothetical protein; 96.1 0.14 3E-06 55.9 15.3 64 310-377 463-535 (557)
398 KOG4499 Ca2+-binding protein R 96.0 0.4 8.6E-06 44.2 14.8 99 253-355 160-263 (310)
399 KOG2280 Vacuolar assembly/sort 96.0 0.74 1.6E-05 49.6 19.0 202 217-452 63-271 (829)
400 TIGR03118 PEPCTERM_chp_1 conse 96.0 1.7 3.7E-05 42.1 26.8 172 264-450 101-307 (336)
401 PF14870 PSII_BNR: Photosynthe 95.9 1.9 4.2E-05 42.6 25.3 159 248-424 142-301 (302)
402 PF14727 PHTB1_N: PTHB1 N-term 95.9 2.5 5.5E-05 43.7 28.6 160 161-329 37-204 (418)
403 COG4257 Vgb Streptogramin lyas 95.9 1.7 3.7E-05 41.3 22.7 236 151-429 63-307 (353)
404 KOG4441 Proteins containing BT 95.8 1.6 3.4E-05 47.7 21.7 197 208-432 285-504 (571)
405 PF10647 Gmad1: Lipoprotein Lp 95.7 2.2 4.8E-05 41.3 21.3 158 151-325 25-192 (253)
406 PF10168 Nup88: Nuclear pore c 95.6 2.4 5.1E-05 47.4 22.2 91 197-288 85-186 (717)
407 PF10647 Gmad1: Lipoprotein Lp 95.6 2.3 5E-05 41.1 22.7 147 252-409 25-184 (253)
408 KOG2247 WD40 repeat-containing 95.6 0.0025 5.5E-08 64.2 -0.6 159 188-371 26-184 (615)
409 KOG2444 WD40 repeat protein [G 95.6 0.035 7.6E-07 50.8 6.5 144 164-330 33-178 (238)
410 PF12894 Apc4_WD40: Anaphase-p 95.6 0.048 1E-06 37.0 5.6 34 196-229 11-44 (47)
411 KOG1898 Splicing factor 3b, su 95.5 5.6 0.00012 44.9 25.2 86 367-462 912-1017(1205)
412 PF15390 DUF4613: Domain of un 95.5 0.52 1.1E-05 49.4 15.3 117 346-472 57-184 (671)
413 KOG4441 Proteins containing BT 95.5 1.4 2.9E-05 48.2 19.5 191 158-377 282-501 (571)
414 KOG1916 Nuclear protein, conta 95.4 0.016 3.5E-07 62.7 4.4 173 246-432 128-328 (1283)
415 PRK10115 protease 2; Provision 95.4 5.9 0.00013 44.4 28.8 246 150-430 127-397 (686)
416 PF12234 Rav1p_C: RAVE protein 95.4 0.46 1E-05 51.4 15.3 113 302-426 32-155 (631)
417 PRK13684 Ycf48-like protein; P 95.3 3.7 8E-05 41.6 30.6 143 301-459 174-321 (334)
418 PF05694 SBP56: 56kDa selenium 95.2 2.7 5.8E-05 43.1 18.9 205 264-482 88-350 (461)
419 PF12894 Apc4_WD40: Anaphase-p 95.2 0.078 1.7E-06 35.9 5.6 33 391-431 12-44 (47)
420 TIGR03075 PQQ_enz_alc_DH PQQ-d 95.2 5.8 0.00013 42.9 31.7 202 161-379 69-337 (527)
421 COG5167 VID27 Protein involved 94.9 1.3 2.9E-05 45.5 15.7 61 310-375 572-632 (776)
422 PHA03098 kelch-like protein; P 94.8 0.99 2.1E-05 49.2 16.5 103 264-376 391-512 (534)
423 KOG2377 Uncharacterized conser 94.7 2.1 4.5E-05 43.5 16.2 119 149-281 66-185 (657)
424 PF14655 RAB3GAP2_N: Rab3 GTPa 94.6 6.4 0.00014 40.8 24.9 41 392-439 309-349 (415)
425 PF08728 CRT10: CRT10; InterP 94.3 1.7 3.7E-05 47.7 15.9 109 310-426 113-245 (717)
426 PF02333 Phytase: Phytase; In 94.1 5.1 0.00011 40.8 18.1 201 159-376 66-291 (381)
427 PF11635 Med16: Mediator compl 94.0 6.5 0.00014 44.6 20.7 197 258-461 56-341 (753)
428 PHA03098 kelch-like protein; P 93.9 3 6.5E-05 45.5 17.6 151 264-430 344-514 (534)
429 PHA02790 Kelch-like protein; P 93.5 3.5 7.6E-05 44.1 16.9 100 264-376 364-471 (480)
430 PF13449 Phytase-like: Esteras 93.5 7.4 0.00016 39.3 18.4 154 301-456 21-230 (326)
431 PF08728 CRT10: CRT10; InterP 93.4 1.4 3.1E-05 48.2 13.5 111 263-374 114-245 (717)
432 PF10168 Nup88: Nuclear pore c 93.4 1.8 3.9E-05 48.3 14.6 84 301-385 86-189 (717)
433 COG4590 ABC-type uncharacteriz 93.3 0.46 9.9E-06 48.0 8.8 172 246-431 216-390 (733)
434 KOG2280 Vacuolar assembly/sort 93.3 15 0.00033 40.2 21.6 56 170-232 63-118 (829)
435 COG5290 IkappaB kinase complex 93.2 4.6 0.0001 44.0 16.4 102 349-460 250-357 (1243)
436 PF12234 Rav1p_C: RAVE protein 93.2 2.8 6.1E-05 45.6 15.2 115 347-476 31-158 (631)
437 PF10214 Rrn6: RNA polymerase 93.1 19 0.00042 41.1 26.6 179 194-377 77-278 (765)
438 PF10313 DUF2415: Uncharacteri 93.0 0.35 7.6E-06 31.8 5.0 31 301-331 2-35 (43)
439 COG3204 Uncharacterized protei 93.0 9.3 0.0002 37.0 19.9 169 246-427 81-263 (316)
440 PF13449 Phytase-like: Esteras 92.9 6.5 0.00014 39.7 16.9 162 197-362 20-231 (326)
441 PF14761 HPS3_N: Hermansky-Pud 92.6 6.1 0.00013 36.5 14.4 105 265-376 30-164 (215)
442 TIGR03074 PQQ_membr_DH membran 92.6 22 0.00047 40.3 23.3 169 264-437 195-432 (764)
443 KOG2377 Uncharacterized conser 92.2 2.6 5.5E-05 42.9 12.3 144 305-460 28-173 (657)
444 PRK13684 Ycf48-like protein; P 91.9 16 0.00034 37.0 26.9 156 250-425 172-329 (334)
445 TIGR03606 non_repeat_PQQ dehyd 91.7 14 0.00031 38.7 17.9 113 251-366 30-166 (454)
446 PF10433 MMS1_N: Mono-function 91.7 22 0.00048 38.4 24.5 108 308-425 219-340 (504)
447 TIGR01063 gyrA DNA gyrase, A s 91.5 30 0.00066 39.5 29.7 217 156-375 491-718 (800)
448 PF10313 DUF2415: Uncharacteri 91.2 0.96 2.1E-05 29.7 5.5 31 252-282 2-34 (43)
449 COG5167 VID27 Protein involved 91.0 17 0.00036 37.9 16.7 163 243-426 459-631 (776)
450 TIGR03606 non_repeat_PQQ dehyd 91.0 23 0.0005 37.3 19.2 107 301-409 31-164 (454)
451 TIGR03032 conserved hypothetic 90.7 18 0.00039 35.6 22.1 94 351-451 208-315 (335)
452 KOG1916 Nuclear protein, conta 90.4 0.19 4E-06 54.9 2.6 123 143-281 126-265 (1283)
453 TIGR03074 PQQ_membr_DH membran 90.2 38 0.00081 38.5 24.6 26 404-436 461-486 (764)
454 PF10433 MMS1_N: Mono-function 90.0 31 0.00067 37.2 26.2 134 354-497 219-365 (504)
455 PF11635 Med16: Mediator compl 89.6 43 0.00093 38.1 21.5 70 301-370 261-345 (753)
456 PF07995 GSDH: Glucose / Sorbo 89.4 26 0.00056 35.4 27.6 113 199-319 4-133 (331)
457 PF07569 Hira: TUP1-like enhan 89.3 1.8 4E-05 40.7 8.2 68 307-375 18-95 (219)
458 PHA02790 Kelch-like protein; P 89.3 23 0.00049 38.0 17.6 149 264-430 320-473 (480)
459 COG5276 Uncharacterized conser 89.1 23 0.0005 34.3 25.7 162 252-436 88-250 (370)
460 KOG2247 WD40 repeat-containing 89.0 0.087 1.9E-06 53.6 -1.0 160 302-478 37-202 (615)
461 KOG3616 Selective LIM binding 88.9 19 0.00041 39.2 15.6 80 343-437 335-415 (1636)
462 PF07250 Glyoxal_oxid_N: Glyox 88.4 7.7 0.00017 37.0 11.7 126 302-436 69-206 (243)
463 PF10395 Utp8: Utp8 family; I 88.2 32 0.0007 37.7 17.3 187 127-328 108-304 (670)
464 TIGR03548 mutarot_permut cycli 88.1 31 0.00067 34.7 19.9 63 264-331 125-196 (323)
465 PF07569 Hira: TUP1-like enhan 88.1 2.4 5.2E-05 39.9 8.1 72 157-229 18-98 (219)
466 PF05096 Glu_cyclase_2: Glutam 87.7 14 0.0003 35.5 12.8 109 348-474 47-157 (264)
467 PRK05560 DNA gyrase subunit A; 87.6 59 0.0013 37.3 29.9 218 156-375 493-721 (805)
468 PF02333 Phytase: Phytase; In 86.8 40 0.00086 34.5 21.9 212 207-436 67-300 (381)
469 smart00036 CNH Domain found in 86.7 36 0.00078 33.9 29.2 255 160-436 12-279 (302)
470 TIGR02276 beta_rpt_yvtn 40-res 86.5 3.9 8.4E-05 26.5 6.3 32 400-437 1-32 (42)
471 PF12657 TFIIIC_delta: Transcr 86.2 5 0.00011 36.2 8.8 30 347-376 87-122 (173)
472 KOG4460 Nuclear pore complex, 85.6 12 0.00026 39.0 11.7 73 391-474 104-198 (741)
473 PF14761 HPS3_N: Hermansky-Pud 84.9 28 0.00061 32.2 12.8 109 358-475 29-164 (215)
474 KOG2109 WD40 repeat protein [G 84.8 3.5 7.5E-05 44.0 7.7 79 141-219 307-391 (788)
475 PF03022 MRJP: Major royal jel 84.7 43 0.00094 33.0 18.2 141 274-428 35-216 (287)
476 COG4257 Vgb Streptogramin lyas 84.5 40 0.00086 32.5 21.8 204 195-430 60-265 (353)
477 KOG4460 Nuclear pore complex, 84.4 11 0.00024 39.3 10.8 28 149-176 103-130 (741)
478 PLN02153 epithiospecifier prot 84.3 50 0.0011 33.4 18.1 20 264-283 87-111 (341)
479 PF14727 PHTB1_N: PTHB1 N-term 84.3 56 0.0012 34.0 28.6 158 207-375 36-204 (418)
480 COG4590 ABC-type uncharacteriz 84.2 7.9 0.00017 39.5 9.6 166 195-377 219-388 (733)
481 KOG1983 Tomosyn and related SN 84.0 47 0.001 39.0 17.3 75 341-431 194-268 (993)
482 PF11725 AvrE: Pathogenicity f 83.4 60 0.0013 39.3 17.3 133 316-459 618-762 (1774)
483 KOG1900 Nuclear pore complex, 83.3 25 0.00054 41.1 14.0 76 300-376 179-273 (1311)
484 PLN02193 nitrile-specifier pro 83.2 69 0.0015 34.2 18.5 65 264-331 280-353 (470)
485 KOG3522 Predicted guanine nucl 82.9 11 0.00023 41.7 10.6 155 265-434 549-704 (925)
486 TIGR03118 PEPCTERM_chp_1 conse 82.9 50 0.0011 32.4 20.8 217 251-474 23-279 (336)
487 PF12657 TFIIIC_delta: Transcr 82.6 14 0.00029 33.4 10.0 30 301-330 87-122 (173)
488 KOG2006 WD40 repeat protein [G 82.5 9.9 0.00021 42.9 10.4 75 154-228 153-227 (1023)
489 KOG2063 Vacuolar assembly/sort 80.9 1.1E+02 0.0024 35.0 17.9 72 157-229 22-99 (877)
490 PF14781 BBS2_N: Ciliary BBSom 80.7 34 0.00075 29.1 12.0 114 153-282 2-126 (136)
491 PF07250 Glyoxal_oxid_N: Glyox 80.2 34 0.00074 32.7 12.0 82 324-410 49-137 (243)
492 PF11715 Nup160: Nucleoporin N 80.0 9 0.00019 41.9 9.4 39 392-437 216-258 (547)
493 PRK13979 DNA topoisomerase IV 79.8 1.3E+02 0.0028 35.2 32.0 170 156-329 511-689 (957)
494 COG3823 Glutamine cyclotransfe 78.2 57 0.0012 30.1 14.4 174 264-459 57-247 (262)
495 PLN00033 photosystem II stabil 77.5 94 0.002 32.3 32.4 143 302-459 241-389 (398)
496 COG5276 Uncharacterized conser 77.2 75 0.0016 31.0 27.4 157 199-379 89-245 (370)
497 PF03022 MRJP: Major royal jel 77.2 79 0.0017 31.2 15.8 207 151-363 2-253 (287)
498 KOG1898 Splicing factor 3b, su 77.1 1.5E+02 0.0032 34.3 17.7 106 306-426 940-1047(1205)
499 TIGR03547 muta_rot_YjhT mutatr 76.9 89 0.0019 31.7 18.3 188 160-368 63-333 (346)
500 PF11715 Nup160: Nucleoporin N 76.9 6.7 0.00014 42.9 7.2 83 206-288 156-255 (547)
No 1
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=100.00 E-value=3.2e-103 Score=755.22 Aligned_cols=597 Identities=51% Similarity=0.808 Sum_probs=503.1
Q ss_pred CCCCcccccccccCCCchhhccccccCCCCC--CC------ccccccccCCCCCCCcCcccc----ccccCCCCCCCCCC
Q 048012 1 AQFPFTFGKQAKSQTPLEKIHNATRRSDPLT--TT------TAATDNEKNNLPSISSSSKEW----LGTLRNPKSSDAAP 68 (616)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~------~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~ 68 (616)
+|++.+||+.++..+...++|+-+|+-.-.. .+ .....+.+.-+.+.+...... .+..+++...-..
T Consensus 8 ~~~~d~~~~d~k~s~~~~g~g~~~r~~D~~~m~~qti~~~~~~~e~~~~~~~~~is~~~r~~~~di~~~~~~~nv~rd~- 86 (641)
T KOG0772|consen 8 AHMDDNTAPDSKKSSEKEGIGSKARVMDLENMFIQTISDLQFTKEAQHKDENMSISRFIRKKESDIRGPNRNPNVSRDV- 86 (641)
T ss_pred cccCcccCCccccchhhcccccceeeechhhhhhhhhhhccccccccccccccchhhhcchhhhhcccccccccccccc-
Confidence 6899999999999999999998877654221 01 101112222223333222222 1222233222111
Q ss_pred CCCCCC--CCcccccccCCCCeeccCCCCCCCCC----CCcCcccccCCCCCCCCCCCCCCCCcccccccccCCCCCcce
Q 048012 69 IGPPPP--PPRQQELKADDGDVMIGPPRPPQQQE----DDADSVMIGPPRPPAESGDDDDDDVDEEEGEENRHQIPMSNE 142 (616)
Q Consensus 69 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 142 (616)
.+++++ ..+.+++++++++++++|++|. ... ...+++. | +..+++++++++++++++...+.+|.+++
T Consensus 87 m~~~~~~ss~~s~e~~de~ee~~mgplPP~-~~~~~~~a~~es~~--p---~e~~ddd~e~deD~~~e~~~~~~IP~shE 160 (641)
T KOG0772|consen 87 MGPPRVSSSINSDEEEDEDEEDFMGPLPPK-KLGSKSTALQESDS--P---PEGEDDDSEEDEDEDEEESIIKLIPGSHE 160 (641)
T ss_pred cCCCCCccccccccccccchhhhcCCCCch-hccCcccccccccC--C---CcCccccccccccccchhchhhcCCccce
Confidence 233322 3344444455556666744433 222 1222221 1 22222222223333333334678999999
Q ss_pred EEecCCcccEEEEEECCCCCEEEEEEcCCcEEEEeCCCCccccccceecCCCCCCceEEEEecCCCCeEEEEeCCCeEEE
Q 048012 143 IVLKGHTKIVSALAVDHSGSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSDRFLCVTGSAQAKI 222 (616)
Q Consensus 143 ~~l~~H~~~V~~v~~sp~g~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~s~d~~v~v 222 (616)
+.|++|+..|+++++.|.|.+|++||.|.+|++|||++|...++.|+.+.+...|.|.+++|++.|..|+++++..+++|
T Consensus 161 i~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl 240 (641)
T KOG0772|consen 161 IQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAKL 240 (641)
T ss_pred EeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcceeE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEEEECCCccccceEEeeeccCCCCccE
Q 048012 223 YDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPGRVAV 302 (616)
Q Consensus 223 wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v 302 (616)
+|.++.++.++.+|++|++++.+.+||...++|.+|||+.+..|+||+.||++||||+.+.+.+.+++......+.+..+
T Consensus 241 ~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~ 320 (641)
T KOG0772|consen 241 LDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPV 320 (641)
T ss_pred EccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998888899999
Q ss_pred EEEEECCCCCeEEEEeCCCcEEEEeCCCCCCCCCceeeecCCCC--CeEEEEEcCCCCeEEEEecCCcEEEEeCCCCCCc
Q 048012 303 TTCAWDCDGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHSD--DITALKFSSDGRILLSRSFDGSLKVWDLRKMKEP 380 (616)
Q Consensus 303 ~~~~~sp~g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~h~~--~V~~l~~spdg~~l~s~s~Dg~v~lwd~~~~~~~ 380 (616)
++|+|+++|++||+|+.||+|++|+..+. ..++.+....+|.. .|+||.||+||++|++.+.|+++++||+++.+.+
T Consensus 321 tsC~~nrdg~~iAagc~DGSIQ~W~~~~~-~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkp 399 (641)
T KOG0772|consen 321 TSCAWNRDGKLIAAGCLDGSIQIWDKGSR-TVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKP 399 (641)
T ss_pred eeeecCCCcchhhhcccCCceeeeecCCc-ccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccccc
Confidence 99999999999999999999999998653 36677888899988 8999999999999999999999999999999999
Q ss_pred ceEecCCCCCCcceeEEECCCCCEEEEeeccccccCCCceEEEEeCCCCceEEEEecCCCCCeEEEEEcCCCCcEEEEec
Q 048012 381 LKVFEDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREKLELVSRVGISPACSVVQCAWHPKLNQIFATAG 460 (616)
Q Consensus 381 ~~~~~~~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~ 460 (616)
+.+..++...+.-+.++|||+.++|++|++..... ..|.|+|||..+.+.++++.++ ...|..|.|||..|+|+++++
T Consensus 400 L~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~-~~g~L~f~d~~t~d~v~ki~i~-~aSvv~~~WhpkLNQi~~gsg 477 (641)
T KOG0772|consen 400 LNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGM-TAGTLFFFDRMTLDTVYKIDIS-TASVVRCLWHPKLNQIFAGSG 477 (641)
T ss_pred hhhhcCCCccCCCCccccCCCceEEEecccccCCC-CCceEEEEeccceeeEEEecCC-CceEEEEeecchhhheeeecC
Confidence 99999999999999999999999999999765443 3568999999999999999885 678999999999999999999
Q ss_pred cCCCCceEEEecccCCCCCcEEEEecCCcceecccccCCceeeCCCCCCcccCChhh--HHHhhhhccCCCCCCCCCCCc
Q 048012 461 DKSQGGTHILYDPRLSERGALVCVARAPRKKSVDDFEVAPVIHNPHALPLFRDQPSR--KRQREKLLKDPIKSHKPEVPV 538 (616)
Q Consensus 461 d~~~~~~~~v~~~~~s~~g~~l~s~~~d~~~~~wd~~~~~~~~~p~~~~l~~~~~~~--~~~~~~~~~~~~~~~~p~~p~ 538 (616)
| |...++|++..|.+|..+|+....++.++.++....++++||+++||++++++ +++.++.+.||+++++|+.|+
T Consensus 478 d---G~~~vyYdp~~S~RGak~cv~k~~rkk~~~e~~~~~~ii~phalpmfre~~~rt~~~~~Eka~~dp~ks~rpd~pv 554 (641)
T KOG0772|consen 478 D---GTAHVYYDPNESIRGAKLCVVKPPRKKHIDEDLSEDVIINPHALPMFREEKSRTKRKRMEKARLDPLKSHRPDNPV 554 (641)
T ss_pred C---CceEEEECccccccchhheeecCccccchhhhcCcceEEccccchhccCchhhhhHHHHhhhhcCHhhhcCCCCCc
Confidence 7 89999999999999999999999999999999999999999999999998776 688899999999999999999
Q ss_pred cCCCCCcccccCCCCchhHHHHhhcCCccCcCCCcChHHHHHhhHHHHccCCccchhhhhhcCCCccccccCC
Q 048012 539 TGPGHGGRVGASKGSLLTQYLLKQGGMIKETWMEEDPREAILKYADVAAKDPKYIAPAYAQTQPAPVFQESDS 611 (616)
Q Consensus 539 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpre~~l~~~~~~~~~p~~~~~a~~~~qp~~~~~~~~~ 611 (616)
.|++.+||+++++| .|++|++||+|+.++.+.+|||||||||||+.|++||+||+|||.+|||++||++.++
T Consensus 555 ~g~g~ggRv~t~Gg-~L~sy~vk~iglak~~~~d~DpREAILKyAk~A~~nP~~iapaYskTQPk~IF~~~~~ 626 (641)
T KOG0772|consen 555 TGPGKGGRVATSGG-LLSSYLVKQIGLAKNFMDDEDPREAILKYAKVAEENPYFIAPAYSKTQPKTIFQEVDS 626 (641)
T ss_pred cCCCCCCcccccCc-cHHHHHHhhcccccccccccCHHHHHHHHHhhhhhCccccchhhhccCCchhhcccCc
Confidence 99999999999975 4999999999999999999999999999999999999999999999999999999543
No 2
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.6e-47 Score=357.40 Aligned_cols=317 Identities=23% Similarity=0.340 Sum_probs=272.9
Q ss_pred eEEecCCcccEEEEEECCCCCEEEEEEcCCcEEEEeCCCCccccccceecCCCCCCceEEEEecCCCCeEEEEeCCCeEE
Q 048012 142 EIVLKGHTKIVSALAVDHSGSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSDRFLCVTGSAQAK 221 (616)
Q Consensus 142 ~~~l~~H~~~V~~v~~sp~g~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~s~d~~v~ 221 (616)
...+.||.++|.|++|+|+|.+||||+.|.++|+||+.+... ......|.+.|.|++|+|||..|++|+.+|+|+
T Consensus 108 ssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp-----~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~ 182 (480)
T KOG0271|consen 108 SSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETP-----LFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIR 182 (480)
T ss_pred ccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCc-----ceeecCCccEEEEEEECCCcchhhccccCCeEE
Confidence 446789999999999999999999999999999999987432 223346888999999999999999999999999
Q ss_pred EEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCC----CCCEEEEEeCCCCEEEEECCCccccceEEeeeccCC
Q 048012 222 IYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPK----TKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARP 297 (616)
Q Consensus 222 vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~----~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~ 297 (616)
+||..+++. ..+.+.+|...|++++|.|- ...+|++++.||+|+|||+..+.++..+ .+
T Consensus 183 lwdpktg~~-----------~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~l------sg 245 (480)
T KOG0271|consen 183 LWDPKTGQQ-----------IGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTL------SG 245 (480)
T ss_pred EecCCCCCc-----------ccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEe------cc
Confidence 999876552 24558999999999999874 2358999999999999999876555443 46
Q ss_pred CCccEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCCCCCceeeecCCCCCeEEEEEc-----------CCCC--------
Q 048012 298 GRVAVTTCAWDCDGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHSDDITALKFS-----------SDGR-------- 358 (616)
Q Consensus 298 ~~~~v~~~~~sp~g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~s-----------pdg~-------- 358 (616)
|..+|+|+.|--+ .+|++|+.|++|++|+...| .+...+++|...|+.|+.+ |.++
T Consensus 246 HT~~VTCvrwGG~-gliySgS~DrtIkvw~a~dG----~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~ 320 (480)
T KOG0271|consen 246 HTASVTCVRWGGE-GLIYSGSQDRTIKVWRALDG----KLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEE 320 (480)
T ss_pred CccceEEEEEcCC-ceEEecCCCceEEEEEccch----hHHHhhcccchheeeeeccchhhhhccccccccccCCChHHH
Confidence 7779999999754 48999999999999999877 6888999999999999887 2233
Q ss_pred -----------------eEEEEecCCcEEEEeCCCCCCcceEecCCCCCCcceeEEECCCCCEEEEeeccccccCCCceE
Q 048012 359 -----------------ILLSRSFDGSLKVWDLRKMKEPLKVFEDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLL 421 (616)
Q Consensus 359 -----------------~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i 421 (616)
.|++|+.|.++.+|+....++++..+.+|. .-|..+.||||++||++++ .|..|
T Consensus 321 ~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq--~lVn~V~fSPd~r~IASaS-------FDkSV 391 (480)
T KOG0271|consen 321 QKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQ--ALVNHVSFSPDGRYIASAS-------FDKSV 391 (480)
T ss_pred HHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchh--hheeeEEECCCccEEEEee-------cccce
Confidence 499999999999999988777777776654 4499999999999999999 89999
Q ss_pred EEEeCCCCceEEEEecCCCCCeEEEEEcCCCCcEEEEeccC---------------CCCceEEEecccCCCCCcEEEEec
Q 048012 422 CFYDREKLELVSRVGISPACSVVQCAWHPKLNQIFATAGDK---------------SQGGTHILYDPRLSERGALVCVAR 486 (616)
Q Consensus 422 ~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~---------------~~~~~~~v~~~~~s~~g~~l~s~~ 486 (616)
++||..+|+.+.++.. |-..|..|+|+.+.+.|++++.|. +.||.-.||.+.++|||..+|+++
T Consensus 392 kLW~g~tGk~lasfRG-Hv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vDwspDG~rV~sgg 470 (480)
T KOG0271|consen 392 KLWDGRTGKFLASFRG-HVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVFAVDWSPDGQRVASGG 470 (480)
T ss_pred eeeeCCCcchhhhhhh-ccceeEEEEeccCccEEEEcCCCceEEEEEeeeeeecccCCCCCceEEEEEecCCCceeecCC
Confidence 9999999999999975 778999999999998888888865 456677777788999999999999
Q ss_pred CCcceeccc
Q 048012 487 APRKKSVDD 495 (616)
Q Consensus 487 ~d~~~~~wd 495 (616)
.|+.+++|.
T Consensus 471 kdkv~~lw~ 479 (480)
T KOG0271|consen 471 KDKVLRLWR 479 (480)
T ss_pred CceEEEeec
Confidence 999999995
No 3
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=2.5e-42 Score=327.08 Aligned_cols=283 Identities=21% Similarity=0.326 Sum_probs=243.4
Q ss_pred CCcccEEEEEECCCCCEEEEEEcCCcEEEEeCCCCccccccceecCCCCCCceEEEEecCC--CCeEEEEeCCCeEEEEE
Q 048012 147 GHTKIVSALAVDHSGSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPT--SDRFLCVTGSAQAKIYD 224 (616)
Q Consensus 147 ~H~~~V~~v~~sp~g~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~--g~~l~~~s~d~~v~vwd 224 (616)
|.+.+|..+.|+.++..|||||.+|.++||+.... .......+|...|.++.|+|. +..|++++.||++++|+
T Consensus 173 gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~-----~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~ 247 (459)
T KOG0272|consen 173 GDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQC-----NLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWK 247 (459)
T ss_pred cCCCcceeeEeecCCCeEEEeecCCceeEeecCCc-----ceeEEEeccccceeeEEEccCCCccceeeeccCCceeeec
Confidence 67899999999999999999999999999998764 334445578889999999997 56899999999999999
Q ss_pred CCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEEEECCCccccceEEeeeccCCCCccEEE
Q 048012 225 RDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPGRVAVTT 304 (616)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~ 304 (616)
+++.. .+..+.+|...|..++|||+| .+|+|++.|.+-|+||+.+..... ...+|...|.+
T Consensus 248 ~~~e~------------~l~~l~gH~~RVs~VafHPsG-~~L~TasfD~tWRlWD~~tk~ElL------~QEGHs~~v~~ 308 (459)
T KOG0272|consen 248 LSQET------------PLQDLEGHLARVSRVAFHPSG-KFLGTASFDSTWRLWDLETKSELL------LQEGHSKGVFS 308 (459)
T ss_pred cCCCc------------chhhhhcchhhheeeeecCCC-ceeeecccccchhhcccccchhhH------hhcccccccce
Confidence 99764 367789999999999999988 599999999999999998865432 22577779999
Q ss_pred EEECCCCCeEEEEeCCCcEEEEeCCCCCCCCCceeeecCCCCCeEEEEEcCCCCeEEEEecCCcEEEEeCCCCCCcceEe
Q 048012 305 CAWDCDGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHSDDITALKFSSDGRILLSRSFDGSLKVWDLRKMKEPLKVF 384 (616)
Q Consensus 305 ~~~sp~g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~v~lwd~~~~~~~~~~~ 384 (616)
|+|.++|.++++|+.|..-+|||++++ .++..+.+|..+|.+|+|+|+|..|||||.|++++|||++. ...+.++
T Consensus 309 iaf~~DGSL~~tGGlD~~~RvWDlRtg----r~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~-r~~ly~i 383 (459)
T KOG0272|consen 309 IAFQPDGSLAATGGLDSLGRVWDLRTG----RCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRM-RSELYTI 383 (459)
T ss_pred eEecCCCceeeccCccchhheeecccC----cEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeecc-cccceec
Confidence 999999999999999999999999998 78999999999999999999999999999999999999996 4446666
Q ss_pred cCCCCCCcceeEEECC-CCCEEEEeeccccccCCCceEEEEeCCCCceEEEEecCCCCCeEEEEEcCCCCcEEEEeccCC
Q 048012 385 EDLPNNYAQTNVAFSP-DEQLFLTGTSVERESTTGGLLCFYDREKLELVSRVGISPACSVVQCAWHPKLNQIFATAGDKS 463 (616)
Q Consensus 385 ~~~~~~~~v~~v~fsp-dg~~l~~gs~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~ 463 (616)
..|. .-|+.|.|+| .|.+|++++ .|++++||...++.+++.+.. |.+.|.+|..++++..|++++.
T Consensus 384 pAH~--nlVS~Vk~~p~~g~fL~Tas-------yD~t~kiWs~~~~~~~ksLaG-He~kV~s~Dis~d~~~i~t~s~--- 450 (459)
T KOG0272|consen 384 PAHS--NLVSQVKYSPQEGYFLVTAS-------YDNTVKIWSTRTWSPLKSLAG-HEGKVISLDISPDSQAIATSSF--- 450 (459)
T ss_pred cccc--chhhheEecccCCeEEEEcc-------cCcceeeecCCCcccchhhcC-CccceEEEEeccCCceEEEecc---
Confidence 6654 4499999999 788999999 999999999999999998864 6677777777777666666655
Q ss_pred CCceEEEec
Q 048012 464 QGGTHILYD 472 (616)
Q Consensus 464 ~~~~~~v~~ 472 (616)
+.++++|.
T Consensus 451 -DRT~KLW~ 458 (459)
T KOG0272|consen 451 -DRTIKLWR 458 (459)
T ss_pred -Cceeeecc
Confidence 45555553
No 4
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.2e-41 Score=318.20 Aligned_cols=291 Identities=25% Similarity=0.384 Sum_probs=246.9
Q ss_pred cceEEecCCcccEEEEEECCCCCEEEEEEcCCcEEEEeCCCCccccccceecCCCCCCceEEEEecC-----CCCeEEEE
Q 048012 140 SNEIVLKGHTKIVSALAVDHSGSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSP-----TSDRFLCV 214 (616)
Q Consensus 140 ~~~~~l~~H~~~V~~v~~sp~g~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp-----~g~~l~~~ 214 (616)
++..+.++|...|.||+|+|||..||+|+.||.|++||..++.+..+ ....|...|++|+|.| ..++|+++
T Consensus 148 Tp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g~----~l~gH~K~It~Lawep~hl~p~~r~las~ 223 (480)
T KOG0271|consen 148 TPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGR----ALRGHKKWITALAWEPLHLVPPCRRLASS 223 (480)
T ss_pred CcceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCCcccc----cccCcccceeEEeecccccCCCccceecc
Confidence 34568999999999999999999999999999999999887654333 3457888899999975 56789999
Q ss_pred eCCCeEEEEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEEEECCCccccceEEeeec
Q 048012 215 TGSAQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKPKL 294 (616)
Q Consensus 215 s~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~ 294 (616)
+.||.|+|||+..+.. +..+.+|+..|+|+.|--+ .+|++|+.|++|++|+...+.....+.
T Consensus 224 skDg~vrIWd~~~~~~------------~~~lsgHT~~VTCvrwGG~--gliySgS~DrtIkvw~a~dG~~~r~lk---- 285 (480)
T KOG0271|consen 224 SKDGSVRIWDTKLGTC------------VRTLSGHTASVTCVRWGGE--GLIYSGSQDRTIKVWRALDGKLCRELK---- 285 (480)
T ss_pred cCCCCEEEEEccCceE------------EEEeccCccceEEEEEcCC--ceEEecCCCceEEEEEccchhHHHhhc----
Confidence 9999999999987754 4557899999999999754 599999999999999998877665542
Q ss_pred cCCCCccEEEEEEC-----------CCCC-------------------------eEEEEeCCCcEEEEeCCCCCCCCCce
Q 048012 295 ARPGRVAVTTCAWD-----------CDGK-------------------------CIAGGIGDGSIQVWNLKPGWGSRPDI 338 (616)
Q Consensus 295 ~~~~~~~v~~~~~s-----------p~g~-------------------------~l~~g~~dg~I~iwd~~~~~~~~~~~ 338 (616)
+|...|+.++.+ |.++ .|++|+.|+++.+|+... ..+++
T Consensus 286 --GHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~---~kkpi 360 (480)
T KOG0271|consen 286 --GHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFK---SKKPI 360 (480)
T ss_pred --ccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccc---cccch
Confidence 333356666554 4444 499999999999999765 34678
Q ss_pred eeecCCCCCeEEEEEcCCCCeEEEEecCCcEEEEeCCCCCCcceEecCCCCCCcceeEEECCCCCEEEEeeccccccCCC
Q 048012 339 HVEKGHSDDITALKFSSDGRILLSRSFDGSLKVWDLRKMKEPLKVFEDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTG 418 (616)
Q Consensus 339 ~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~d 418 (616)
..+.+|..-|+.+.||||++++|+++.|..|+|||-++++ .+..+.+ |-..|+.++|+.|.++|++|+ .|
T Consensus 361 ~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk-~lasfRG--Hv~~VYqvawsaDsRLlVS~S-------kD 430 (480)
T KOG0271|consen 361 TRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGK-FLASFRG--HVAAVYQVAWSADSRLLVSGS-------KD 430 (480)
T ss_pred hhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcc-hhhhhhh--ccceeEEEEeccCccEEEEcC-------CC
Confidence 8899999999999999999999999999999999999865 3556665 445699999999999999999 89
Q ss_pred ceEEEEeCCCCceEEEEecCCCCCeEEEEEcCCCCcEEEEeccCCCCceEEEec
Q 048012 419 GLLCFYDREKLELVSRVGISPACSVVQCAWHPKLNQIFATAGDKSQGGTHILYD 472 (616)
Q Consensus 419 g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~~~~~~~v~~ 472 (616)
.+|++|++++.++..-+.. |...|.++.|+|+|..+++++. +..+++|.
T Consensus 431 sTLKvw~V~tkKl~~DLpG-h~DEVf~vDwspDG~rV~sggk----dkv~~lw~ 479 (480)
T KOG0271|consen 431 STLKVWDVRTKKLKQDLPG-HADEVFAVDWSPDGQRVASGGK----DKVLRLWR 479 (480)
T ss_pred ceEEEEEeeeeeecccCCC-CCceEEEEEecCCCceeecCCC----ceEEEeec
Confidence 9999999999999888864 7788999999999999998887 67888884
No 5
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=1.1e-39 Score=295.35 Aligned_cols=300 Identities=22% Similarity=0.289 Sum_probs=253.6
Q ss_pred CCCCcceEEecCCcccEEEEEECCCCCEEEEEEcCCcEEEEeCCCCccccccceecCCCCCCceEEEEecCCCCeEEEEe
Q 048012 136 QIPMSNEIVLKGHTKIVSALAVDHSGSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSDRFLCVT 215 (616)
Q Consensus 136 ~~p~~~~~~l~~H~~~V~~v~~sp~g~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~s 215 (616)
.+.+....+|+||...|.++.|+++.++|+++|.||.+.|||.-+.+ .....+.....|..++|+|.|+++++|+
T Consensus 42 ~i~~~~rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~Ttn-----K~haipl~s~WVMtCA~sPSg~~VAcGG 116 (343)
T KOG0286|consen 42 RIQMRTRRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTN-----KVHAIPLPSSWVMTCAYSPSGNFVACGG 116 (343)
T ss_pred eeeeeeEEEecccccceeeeEecCCcCeEEeeccCCeEEEEEccccc-----ceeEEecCceeEEEEEECCCCCeEEecC
Confidence 45666678999999999999999999999999999999999977643 2233345667899999999999999999
Q ss_pred CCCeEEEEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEEEECCCccccceEEeeecc
Q 048012 216 GSAQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLA 295 (616)
Q Consensus 216 ~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~ 295 (616)
-|+...||++...... ...+-.+.+.+|++-+.|+.|-.+ ..|+|++.|.+..+||+.+++....+
T Consensus 117 LdN~Csiy~ls~~d~~------g~~~v~r~l~gHtgylScC~f~dD--~~ilT~SGD~TCalWDie~g~~~~~f------ 182 (343)
T KOG0286|consen 117 LDNKCSIYPLSTRDAE------GNVRVSRELAGHTGYLSCCRFLDD--NHILTGSGDMTCALWDIETGQQTQVF------ 182 (343)
T ss_pred cCceeEEEeccccccc------ccceeeeeecCccceeEEEEEcCC--CceEecCCCceEEEEEcccceEEEEe------
Confidence 9999999998854211 111224557899999999999986 47999999999999999988765554
Q ss_pred CCCCccEEEEEECC-CCCeEEEEeCCCcEEEEeCCCCCCCCCceeeecCCCCCeEEEEEcCCCCeEEEEecCCcEEEEeC
Q 048012 296 RPGRVAVTTCAWDC-DGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHSDDITALKFSSDGRILLSRSFDGSLKVWDL 374 (616)
Q Consensus 296 ~~~~~~v~~~~~sp-~g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~v~lwd~ 374 (616)
.+|...|.+++++| +++.+++|+.|+..+|||++.+ ..++.+.+|.+.|++|+|.|+|.-+++|+.|+++++||+
T Consensus 183 ~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~----~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDl 258 (343)
T KOG0286|consen 183 HGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSG----QCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDL 258 (343)
T ss_pred cCCcccEEEEecCCCCCCeEEecccccceeeeeccCc----ceeEeecccccccceEEEccCCCeeeecCCCceeEEEee
Confidence 36777899999999 9999999999999999999987 789999999999999999999999999999999999999
Q ss_pred CCCCCcceEecCCCCCCcceeEEECCCCCEEEEeeccccccCCCceEEEEeCCCCceEEEEecCCCCCeEEEEEcCCCCc
Q 048012 375 RKMKEPLKVFEDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREKLELVSRVGISPACSVVQCAWHPKLNQ 454 (616)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~ 454 (616)
|.. +.+.++........|++++||-.|++|++|. .|..+.+||.-.++.+..+.. |...|.++..+|+|-.
T Consensus 259 RaD-~~~a~ys~~~~~~gitSv~FS~SGRlLfagy-------~d~~c~vWDtlk~e~vg~L~G-HeNRvScl~~s~DG~a 329 (343)
T KOG0286|consen 259 RAD-QELAVYSHDSIICGITSVAFSKSGRLLFAGY-------DDFTCNVWDTLKGERVGVLAG-HENRVSCLGVSPDGMA 329 (343)
T ss_pred cCC-cEEeeeccCcccCCceeEEEcccccEEEeee-------cCCceeEeeccccceEEEeec-cCCeeEEEEECCCCcE
Confidence 964 4466776666677899999999999999998 899999999999998888764 6777777777777666
Q ss_pred EEEEeccCCCCceEEEe
Q 048012 455 IFATAGDKSQGGTHILY 471 (616)
Q Consensus 455 l~~~~~d~~~~~~~~v~ 471 (616)
+.+++. +..++||
T Consensus 330 v~TgSW----Ds~lriW 342 (343)
T KOG0286|consen 330 VATGSW----DSTLRIW 342 (343)
T ss_pred EEecch----hHheeec
Confidence 666665 5555555
No 6
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=3e-38 Score=284.56 Aligned_cols=295 Identities=19% Similarity=0.277 Sum_probs=238.2
Q ss_pred eEEecCCcccEEEEEECCC-CCEEEEEEcCCcEEEEeCCCCccccccceecCCCCCCceEEEEecCCCCeEEEEeCCCeE
Q 048012 142 EIVLKGHTKIVSALAVDHS-GSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSDRFLCVTGSAQA 220 (616)
Q Consensus 142 ~~~l~~H~~~V~~v~~sp~-g~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~s~d~~v 220 (616)
.-+|++|++.|+.++..+. ...|++++.|.++.+|++...+...-.......+|.|.|..+..+++|++.++++.|+.+
T Consensus 8 ~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~l 87 (315)
T KOG0279|consen 8 RGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTL 87 (315)
T ss_pred eeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccceE
Confidence 4578999999999999887 468999999999999999876555444555666799999999999999999999999999
Q ss_pred EEEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEEEECCCccccceEEeeeccCCCCc
Q 048012 221 KIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPGRV 300 (616)
Q Consensus 221 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~ 300 (616)
++||+.+++. .+.+.+|...|.+++|++++ ..|++|+.|.+|++||+... +...+. ...++.
T Consensus 88 rlWDl~~g~~------------t~~f~GH~~dVlsva~s~dn-~qivSGSrDkTiklwnt~g~-ck~t~~----~~~~~~ 149 (315)
T KOG0279|consen 88 RLWDLATGES------------TRRFVGHTKDVLSVAFSTDN-RQIVSGSRDKTIKLWNTLGV-CKYTIH----EDSHRE 149 (315)
T ss_pred EEEEecCCcE------------EEEEEecCCceEEEEecCCC-ceeecCCCcceeeeeeeccc-EEEEEe----cCCCcC
Confidence 9999998653 33368999999999999987 58999999999999998653 222221 122366
Q ss_pred cEEEEEECCC--CCeEEEEeCCCcEEEEeCCCCCCCCCceeeecCCCCCeEEEEEcCCCCeEEEEecCCcEEEEeCCCCC
Q 048012 301 AVTTCAWDCD--GKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHSDDITALKFSSDGRILLSRSFDGSLKVWDLRKMK 378 (616)
Q Consensus 301 ~v~~~~~sp~--g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~v~lwd~~~~~ 378 (616)
.|+|+.|+|+ .-+|++++.|++|++||+++. +....+.+|.+.++.+++||||.++++|+.||.+.|||++..+
T Consensus 150 WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~----~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k 225 (315)
T KOG0279|consen 150 WVSCVRFSPNESNPIIVSASWDKTVKVWNLRNC----QLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGK 225 (315)
T ss_pred cEEEEEEcCCCCCcEEEEccCCceEEEEccCCc----chhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCc
Confidence 8999999998 679999999999999999965 6778889999999999999999999999999999999999765
Q ss_pred CcceEecCCCCCCcceeEEECCCCCEEEEeeccccccCCCceEEEEeCCCCceEEEEecCCCC--------CeEEEEEcC
Q 048012 379 EPLKVFEDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREKLELVSRVGISPAC--------SVVQCAWHP 450 (616)
Q Consensus 379 ~~~~~~~~~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~--------~v~~~~~~p 450 (616)
. +.. +.+...|.+++|+|+.-.|+.+. +..|+|||+.+..++..+.....+ ....++|++
T Consensus 226 ~-lys---l~a~~~v~sl~fspnrywL~~at--------~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~ 293 (315)
T KOG0279|consen 226 N-LYS---LEAFDIVNSLCFSPNRYWLCAAT--------ATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSA 293 (315)
T ss_pred e-eEe---ccCCCeEeeEEecCCceeEeecc--------CCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcC
Confidence 4 333 34556799999999988888875 566999999999988877543222 234456666
Q ss_pred CCCcEEEEeccCCCCceEEEeccc
Q 048012 451 KLNQIFATAGDKSQGGTHILYDPR 474 (616)
Q Consensus 451 ~~~~l~~~~~d~~~~~~~~v~~~~ 474 (616)
+|..||++-. ++.+++|.+.
T Consensus 294 dG~tLf~g~t----d~~irv~qv~ 313 (315)
T KOG0279|consen 294 DGQTLFAGYT----DNVIRVWQVA 313 (315)
T ss_pred CCcEEEeeec----CCcEEEEEee
Confidence 6666666555 4555555543
No 7
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=4.6e-39 Score=304.97 Aligned_cols=269 Identities=19% Similarity=0.320 Sum_probs=233.7
Q ss_pred CCCCceEEEEecCCCCeEEEEeCCCeEEEEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCC-CCCEEEEEeCC
Q 048012 194 SEGHQVRNLSWSPTSDRFLCVTGSAQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPK-TKETILTSSED 272 (616)
Q Consensus 194 ~~~~~v~~l~~sp~g~~l~~~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~-~~~~l~s~s~D 272 (616)
+...+|..+.||.++..|++++.+|.++||+...... +..+.||...|.++.|+|. ....++||+.|
T Consensus 173 gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~------------~~~l~gH~~~v~~~~fhP~~~~~~lat~s~D 240 (459)
T KOG0272|consen 173 GDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNL------------LQTLRGHTSRVGAAVFHPVDSDLNLATASAD 240 (459)
T ss_pred cCCCcceeeEeecCCCeEEEeecCCceeEeecCCcce------------eEEEeccccceeeEEEccCCCccceeeeccC
Confidence 4556799999999999999999999999999886653 4557999999999999998 35689999999
Q ss_pred CCEEEEECCCccccceEEeeeccCCCCccEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCCCCCceeeecCCCCCeEEEE
Q 048012 273 GSLRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWDCDGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHSDDITALK 352 (616)
Q Consensus 273 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~ 352 (616)
|+|++|++.+...+..+ .+|...|..++|+|+|++|++++.|.+-+|||++++ ..+....+|...|.+|+
T Consensus 241 gtvklw~~~~e~~l~~l------~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk----~ElL~QEGHs~~v~~ia 310 (459)
T KOG0272|consen 241 GTVKLWKLSQETPLQDL------EGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETK----SELLLQEGHSKGVFSIA 310 (459)
T ss_pred CceeeeccCCCcchhhh------hcchhhheeeeecCCCceeeecccccchhhcccccc----hhhHhhcccccccceeE
Confidence 99999999876544444 245558999999999999999999999999999976 67778899999999999
Q ss_pred EcCCCCeEEEEecCCcEEEEeCCCCCCcceEecCCCCCCcceeEEECCCCCEEEEeeccccccCCCceEEEEeCCCCceE
Q 048012 353 FSSDGRILLSRSFDGSLKVWDLRKMKEPLKVFEDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREKLELV 432 (616)
Q Consensus 353 ~spdg~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~~~~~ 432 (616)
|.+||.+++|||.|..-+|||+|++.. +..+.+ |...|.+|+|+|+|..|++|+ .|++++|||++...++
T Consensus 311 f~~DGSL~~tGGlD~~~RvWDlRtgr~-im~L~g--H~k~I~~V~fsPNGy~lATgs-------~Dnt~kVWDLR~r~~l 380 (459)
T KOG0272|consen 311 FQPDGSLAATGGLDSLGRVWDLRTGRC-IMFLAG--HIKEILSVAFSPNGYHLATGS-------SDNTCKVWDLRMRSEL 380 (459)
T ss_pred ecCCCceeeccCccchhheeecccCcE-EEEecc--cccceeeEeECCCceEEeecC-------CCCcEEEeeecccccc
Confidence 999999999999999999999998654 556666 445699999999999999999 8999999999999999
Q ss_pred EEEecCCCCCeEEEEEcCC-CCcEEEEeccC---------------CCCceEEEecccCCCCCcEEEEecCCcceeccc
Q 048012 433 SRVGISPACSVVQCAWHPK-LNQIFATAGDK---------------SQGGTHILYDPRLSERGALVCVARAPRKKSVDD 495 (616)
Q Consensus 433 ~~~~~~~~~~v~~~~~~p~-~~~l~~~~~d~---------------~~~~~~~v~~~~~s~~g~~l~s~~~d~~~~~wd 495 (616)
+++.. |..-|..|.|.|. |.+|++++.|. +.||...|.+++.+++|.++++++.|+++++|.
T Consensus 381 y~ipA-H~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 381 YTIPA-HSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred eeccc-ccchhhheEecccCCeEEEEcccCcceeeecCCCcccchhhcCCccceEEEEeccCCceEEEeccCceeeecc
Confidence 99875 7778999999995 55566666554 356677777788999999999999999999995
No 8
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=1.1e-36 Score=277.08 Aligned_cols=284 Identities=21% Similarity=0.388 Sum_probs=247.8
Q ss_pred EEecCCcccEEEEEECCCCCEEEEEEcCCcEEEEeCCCCccccccceecCCCCCCceEEEEecCCCCeEEEEeCCCeEEE
Q 048012 143 IVLKGHTKIVSALAVDHSGSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSDRFLCVTGSAQAKI 222 (616)
Q Consensus 143 ~~l~~H~~~V~~v~~sp~g~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~s~d~~v~v 222 (616)
..+.||.+.|+.+.|+|+|.+||||+.|..|.+|++.+.....- ...+|.+.|..+.|..++..|++++.|.+|+.
T Consensus 41 m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~----~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~ 116 (338)
T KOG0265|consen 41 MLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFW----VLKGHSGAVMELHGMRDGSHILSCGTDKTVRG 116 (338)
T ss_pred hhcCCCcceEEEEEECCCCCeEeecCCcceEEEEecccccccee----eeccccceeEeeeeccCCCEEEEecCCceEEE
Confidence 46789999999999999999999999999999999765332222 22378889999999999999999999999999
Q ss_pred EECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEEEECCCccccceEEeeeccCCCCccE
Q 048012 223 YDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPGRVAV 302 (616)
Q Consensus 223 wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v 302 (616)
||..+++. .+.+++|...|+.+.-+..+..++.+++.|++++|||+++....+.+. .+..+
T Consensus 117 wD~~tG~~------------~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~-------~kyql 177 (338)
T KOG0265|consen 117 WDAETGKR------------IRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFE-------NKYQL 177 (338)
T ss_pred Eeccccee------------eehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccc-------cceeE
Confidence 99998763 666899999999999777778899999999999999999876665542 22378
Q ss_pred EEEEECCCCCeEEEEeCCCcEEEEeCCCCCCCCCceeeecCCCCCeEEEEEcCCCCeEEEEecCCcEEEEeCCCC---CC
Q 048012 303 TTCAWDCDGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHSDDITALKFSSDGRILLSRSFDGSLKVWDLRKM---KE 379 (616)
Q Consensus 303 ~~~~~sp~g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~v~lwd~~~~---~~ 379 (616)
+++.|...+..+.+|+-|+.|++||++.+ ....++.+|...|+.|..+++|.++++-++|.++++||++-. .+
T Consensus 178 tAv~f~d~s~qv~sggIdn~ikvWd~r~~----d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R 253 (338)
T KOG0265|consen 178 TAVGFKDTSDQVISGGIDNDIKVWDLRKN----DGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQR 253 (338)
T ss_pred EEEEecccccceeeccccCceeeeccccC----cceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCc
Confidence 99999999999999999999999999976 688999999999999999999999999999999999999853 34
Q ss_pred cceEecCCCCCCcc--eeEEECCCCCEEEEeeccccccCCCceEEEEeCCCCceEEEEecCCCCCeEEEEEcCCCCcEEE
Q 048012 380 PLKVFEDLPNNYAQ--TNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREKLELVSRVGISPACSVVQCAWHPKLNQIFA 457 (616)
Q Consensus 380 ~~~~~~~~~~~~~v--~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~ 457 (616)
++.++.++.++... ..++|+|++..+.+|+ .|..+++||......++.+.. |.+.|+++.|||....|++
T Consensus 254 ~v~if~g~~hnfeknlL~cswsp~~~~i~ags-------~dr~vyvwd~~~r~~lyklpG-h~gsvn~~~Fhp~e~iils 325 (338)
T KOG0265|consen 254 CVKIFQGHIHNFEKNLLKCSWSPNGTKITAGS-------ADRFVYVWDTTSRRILYKLPG-HYGSVNEVDFHPTEPIILS 325 (338)
T ss_pred eEEEeecchhhhhhhcceeeccCCCCcccccc-------ccceEEEeecccccEEEEcCC-cceeEEEeeecCCCcEEEE
Confidence 57788777666544 5679999999999999 899999999999999999975 7789999999999999998
Q ss_pred Eecc
Q 048012 458 TAGD 461 (616)
Q Consensus 458 ~~~d 461 (616)
++.|
T Consensus 326 ~~sd 329 (338)
T KOG0265|consen 326 CSSD 329 (338)
T ss_pred eccC
Confidence 8874
No 9
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=1.6e-35 Score=262.53 Aligned_cols=284 Identities=20% Similarity=0.340 Sum_probs=224.7
Q ss_pred CEEEEEEcCCcEEEEeCCCCccccccceecCCCCCCceEEEEecCCCCeEEEEeCCCeEEEEECCCCeeeeEeeCceeEe
Q 048012 162 SRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSDRFLCVTGSAQAKIYDRDGLTLGEFVKGDMYIR 241 (616)
Q Consensus 162 ~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~s~d~~v~vwd~~~~~~~~~~~~~~~~~ 241 (616)
-+|+|+|+|.+||+|...++. +.+.+ ......|..|...|+++.|+++ +...||+||+..... .
T Consensus 11 viLvsA~YDhTIRfWqa~tG~----C~rTi-qh~dsqVNrLeiTpdk~~LAaa-~~qhvRlyD~~S~np----------~ 74 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGI----CSRTI-QHPDSQVNRLEITPDKKDLAAA-GNQHVRLYDLNSNNP----------N 74 (311)
T ss_pred eEEEeccCcceeeeeehhcCe----EEEEE-ecCccceeeEEEcCCcchhhhc-cCCeeEEEEccCCCC----------C
Confidence 489999999999999988763 22322 2345679999999999888754 567899999987653 2
Q ss_pred ecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEEEECCCccccceEEeeeccCCCCccEEEEEECCCCCeEEEEeCCC
Q 048012 242 DLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWDCDGKCIAGGIGDG 321 (616)
Q Consensus 242 ~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~g~~dg 321 (616)
++.++.+|+..|+.+.|..++ ..+++|+.||++||||++...++..+ .+..+|+++..+|+...|++|..+|
T Consensus 75 Pv~t~e~h~kNVtaVgF~~dg-rWMyTgseDgt~kIWdlR~~~~qR~~-------~~~spVn~vvlhpnQteLis~dqsg 146 (311)
T KOG0315|consen 75 PVATFEGHTKNVTAVGFQCDG-RWMYTGSEDGTVKIWDLRSLSCQRNY-------QHNSPVNTVVLHPNQTELISGDQSG 146 (311)
T ss_pred ceeEEeccCCceEEEEEeecC-eEEEecCCCceEEEEeccCcccchhc-------cCCCCcceEEecCCcceEEeecCCC
Confidence 356678999999999999988 59999999999999999986555544 2334899999999999999999999
Q ss_pred cEEEEeCCCCCCCCCceeeecCCCCCeEEEEEcCCCCeEEEEecCCcEEEEeCCCCC-----CcceEecCCCCCCcceeE
Q 048012 322 SIQVWNLKPGWGSRPDIHVEKGHSDDITALKFSSDGRILLSRSFDGSLKVWDLRKMK-----EPLKVFEDLPNNYAQTNV 396 (616)
Q Consensus 322 ~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~v~lwd~~~~~-----~~~~~~~~~~~~~~v~~v 396 (616)
.|++||+....+... ....-...|.+++..|||.+|+.+...|++++|++-+.. .|+..+.. +...+..+
T Consensus 147 ~irvWDl~~~~c~~~---liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~a--h~~~il~C 221 (311)
T KOG0315|consen 147 NIRVWDLGENSCTHE---LIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQA--HNGHILRC 221 (311)
T ss_pred cEEEEEccCCccccc---cCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheec--ccceEEEE
Confidence 999999997632222 222334679999999999999999999999999986532 23333443 44559999
Q ss_pred EECCCCCEEEEeeccccccCCCceEEEEeCCCCceEEEEecCCCCCeEEEEEcCCCCcEEEEeccCCCCceEEEecccCC
Q 048012 397 AFSPDEQLFLTGTSVERESTTGGLLCFYDREKLELVSRVGISPACSVVQCAWHPKLNQIFATAGDKSQGGTHILYDPRLS 476 (616)
Q Consensus 397 ~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~~~~~~~v~~~~~s 476 (616)
.||||+++|++++ .|.+++||+..+. ....+.. .+|...+|+.+||
T Consensus 222 ~lSPd~k~lat~s-------sdktv~iwn~~~~-~kle~~l--------------------------~gh~rWvWdc~FS 267 (311)
T KOG0315|consen 222 LLSPDVKYLATCS-------SDKTVKIWNTDDF-FKLELVL--------------------------TGHQRWVWDCAFS 267 (311)
T ss_pred EECCCCcEEEeec-------CCceEEEEecCCc-eeeEEEe--------------------------ecCCceEEeeeec
Confidence 9999999999999 8999999999887 2111111 1556889999999
Q ss_pred CCCcEEEEecCCcceecccccCCc--eeeCCCCC
Q 048012 477 ERGALVCVARAPRKKSVDDFEVAP--VIHNPHAL 508 (616)
Q Consensus 477 ~~g~~l~s~~~d~~~~~wd~~~~~--~~~~p~~~ 508 (616)
.||++|++++.|..+++|++.... ..+.+|-.
T Consensus 268 ~dg~YlvTassd~~~rlW~~~~~k~v~qy~gh~K 301 (311)
T KOG0315|consen 268 ADGEYLVTASSDHTARLWDLSAGKEVRQYQGHHK 301 (311)
T ss_pred cCccEEEecCCCCceeecccccCceeeecCCccc
Confidence 999999999999999999998777 45566543
No 10
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=2.4e-36 Score=285.12 Aligned_cols=283 Identities=22% Similarity=0.373 Sum_probs=232.7
Q ss_pred CcccEEEEEECCCCCEEEEEEcCCcEEEEeCCCCccccccceecCCCCCCceEEEEecCCCCeEEEEeCCCeEEEEECCC
Q 048012 148 HTKIVSALAVDHSGSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSDRFLCVTGSAQAKIYDRDG 227 (616)
Q Consensus 148 H~~~V~~v~~sp~g~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~s~d~~v~vwd~~~ 227 (616)
-.-.|..|.|.|+|++|++|+..|-+.+|+.... .|..+...|..+|+++.|++++.+++++..+|.|++|+.+-
T Consensus 95 vkc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~f-----nFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnm 169 (464)
T KOG0284|consen 95 VKCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSF-----NFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNM 169 (464)
T ss_pred cccceeeEEEcCCCceeEeecccccEEEecCcee-----eHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccch
Confidence 3558999999999999999999999999997543 56666778999999999999999999999999999999875
Q ss_pred CeeeeEeeCceeEeecccCCC-cccceEEEEEcCCCCCEEEEEeCCCCEEEEECCCccccceEEeeeccCCCCccEEEEE
Q 048012 228 LTLGEFVKGDMYIRDLKNTKG-HICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPGRVAVTTCA 306 (616)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~-h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~ 306 (616)
..+ +.... |...|++++|+|++ ..|++|+.||+|+|||....+....+ .+|.-.|.++.
T Consensus 170 nnV-------------k~~~ahh~eaIRdlafSpnD-skF~t~SdDg~ikiWdf~~~kee~vL------~GHgwdVksvd 229 (464)
T KOG0284|consen 170 NNV-------------KIIQAHHAEAIRDLAFSPND-SKFLTCSDDGTIKIWDFRMPKEERVL------RGHGWDVKSVD 229 (464)
T ss_pred hhh-------------HHhhHhhhhhhheeccCCCC-ceeEEecCCCeEEEEeccCCchhhee------ccCCCCcceec
Confidence 443 22344 45899999999966 69999999999999999876544433 35555799999
Q ss_pred ECCCCCeEEEEeCCCcEEEEeCCCCCCCCCceeeecCCCCCeEEEEEcCCCCeEEEEecCCcEEEEeCCCCCCcceEecC
Q 048012 307 WDCDGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHSDDITALKFSSDGRILLSRSFDGSLKVWDLRKMKEPLKVFED 386 (616)
Q Consensus 307 ~sp~g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~ 386 (616)
|+|.-.+||+|+.|..|++||.+++ .++.++.+|...|..+.|++++++|+++|.|..++++|+++.+. +..+.+
T Consensus 230 WHP~kgLiasgskDnlVKlWDprSg----~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkE-l~~~r~ 304 (464)
T KOG0284|consen 230 WHPTKGLIASGSKDNLVKLWDPRSG----SCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKE-LFTYRG 304 (464)
T ss_pred cCCccceeEEccCCceeEeecCCCc----chhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHH-HHHhhc
Confidence 9999999999999999999999988 78999999999999999999999999999999999999996443 455555
Q ss_pred CCCCCcceeEEECCCC-CEEEEeeccccccCCCceEEEEeCCCCceEEEEecCCCCCeEEEEEcCCCCcEEEEeccCCCC
Q 048012 387 LPNNYAQTNVAFSPDE-QLFLTGTSVERESTTGGLLCFYDREKLELVSRVGISPACSVVQCAWHPKLNQIFATAGDKSQG 465 (616)
Q Consensus 387 ~~~~~~v~~v~fspdg-~~l~~gs~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~~~ 465 (616)
| ...++++.|+|-. .+|.+|+ .||.|..|.+...+.+-.+...|...|++++|||-|..|++++. +
T Consensus 305 H--kkdv~~~~WhP~~~~lftsgg-------~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsn----d 371 (464)
T KOG0284|consen 305 H--KKDVTSLTWHPLNESLFTSGG-------SDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGSN----D 371 (464)
T ss_pred c--hhhheeeccccccccceeecc-------CCCceEEEeccccccccCCCcccccceeeeeccccceeEeecCC----C
Confidence 4 4459999999964 5666666 89999999998777777776667777777777777554444433 5
Q ss_pred ceEEEecc
Q 048012 466 GTHILYDP 473 (616)
Q Consensus 466 ~~~~v~~~ 473 (616)
.++++|.-
T Consensus 372 ~t~rfw~r 379 (464)
T KOG0284|consen 372 RTVRFWTR 379 (464)
T ss_pred cceeeecc
Confidence 55666653
No 11
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=2.3e-34 Score=258.44 Aligned_cols=298 Identities=19% Similarity=0.317 Sum_probs=238.2
Q ss_pred ceEEecCCcccEEEEEECCC-CCEEEEEEcCCcEEEEeCCCCccccccceecCCCCCCceEEEEecCCCCeEEEEeCCCe
Q 048012 141 NEIVLKGHTKIVSALAVDHS-GSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSDRFLCVTGSAQ 219 (616)
Q Consensus 141 ~~~~l~~H~~~V~~v~~sp~-g~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~s~d~~ 219 (616)
.+..+.+|++.|..++|+|- |..|||||.|..||||+... .....+...+...|...|++++|+|.|++|++++.|.+
T Consensus 6 ~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~-~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t 84 (312)
T KOG0645|consen 6 LEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSS-GDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDAT 84 (312)
T ss_pred eEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCC-CCcEEEEEeccccchheeeeeeecCCCcEEEEeeccce
Confidence 45678999999999999998 89999999999999999885 22344555556678889999999999999999999999
Q ss_pred EEEEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEEEECCCccccceEEeeeccCCCC
Q 048012 220 AKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPGR 299 (616)
Q Consensus 220 v~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~ 299 (616)
+.||.-...+. ..+..+.||...|.|++|+++| ++|++|+.|+.|-||.+........ ......|.
T Consensus 85 ~~Iw~k~~~ef----------ecv~~lEGHEnEVK~Vaws~sG-~~LATCSRDKSVWiWe~deddEfec---~aVL~~Ht 150 (312)
T KOG0645|consen 85 VVIWKKEDGEF----------ECVATLEGHENEVKCVAWSASG-NYLATCSRDKSVWIWEIDEDDEFEC---IAVLQEHT 150 (312)
T ss_pred EEEeecCCCce----------eEEeeeeccccceeEEEEcCCC-CEEEEeeCCCeEEEEEecCCCcEEE---Eeeecccc
Confidence 99998775554 3466789999999999999987 6999999999999999974432221 11223455
Q ss_pred ccEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCCCCCceeeecCCCCCeEEEEEcCCCCeEEEEecCCcEEEEeCCCCCC
Q 048012 300 VAVTTCAWDCDGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHSDDITALKFSSDGRILLSRSFDGSLKVWDLRKMKE 379 (616)
Q Consensus 300 ~~v~~~~~sp~g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~v~lwd~~~~~~ 379 (616)
..|..+.|+|...+|++++.|.+|++|+-..+ ....++..+.+|...|.+++|++.|..|++++.|++|+||-+...
T Consensus 151 qDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~d-ddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~-- 227 (312)
T KOG0645|consen 151 QDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDD-DDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTD-- 227 (312)
T ss_pred ccccEEEEcCCcceeEEeccCCeEEEEeecCC-CCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeeccC--
Confidence 57999999999999999999999999987632 255788999999999999999999999999999999999986631
Q ss_pred cceEecCCCCCCcceeEEECCCCCEEEEeeccccccCCCceEEEEeCCCC------ceEEEEecCCCCCeEEEEEcCC-C
Q 048012 380 PLKVFEDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREKL------ELVSRVGISPACSVVQCAWHPK-L 452 (616)
Q Consensus 380 ~~~~~~~~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~~------~~~~~~~~~~~~~v~~~~~~p~-~ 452 (616)
+ ...+...++.+.|. ...|++++ .|+.|+||.-... +++......|...|++++|.|. .
T Consensus 228 ----~-~~~~sr~~Y~v~W~--~~~IaS~g-------gD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~ 293 (312)
T KOG0645|consen 228 ----L-SGMHSRALYDVPWD--NGVIASGG-------GDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVS 293 (312)
T ss_pred ----c-chhcccceEeeeec--ccceEecc-------CCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCC
Confidence 1 12244558889998 56788888 8999999976532 3333334456678999999996 4
Q ss_pred CcEEEEeccCCCCceEEEeccc
Q 048012 453 NQIFATAGDKSQGGTHILYDPR 474 (616)
Q Consensus 453 ~~l~~~~~d~~~~~~~~v~~~~ 474 (616)
++|++++. ++.+.+|.+.
T Consensus 294 ~~L~s~~D----DG~v~~W~l~ 311 (312)
T KOG0645|consen 294 NRLASGGD----DGIVNFWELE 311 (312)
T ss_pred CceeecCC----CceEEEEEec
Confidence 45555444 7788888653
No 12
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=1.7e-34 Score=269.29 Aligned_cols=319 Identities=18% Similarity=0.222 Sum_probs=255.5
Q ss_pred CcceEEecCCcccEEEEEECCCCCEEEEEEcCCcEEEEeCCCCccccccceecCCCCCCceEEEEecCCCCeEEEEeCCC
Q 048012 139 MSNEIVLKGHTKIVSALAVDHSGSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSDRFLCVTGSA 218 (616)
Q Consensus 139 ~~~~~~l~~H~~~V~~v~~sp~g~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~s~d~ 218 (616)
.....+|..|+..|++|+.+|+.++++||+.|..-.||++.++. +......|+..|.++.||.+|.+|++|..+|
T Consensus 54 DdS~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge-----~~~eltgHKDSVt~~~FshdgtlLATGdmsG 128 (399)
T KOG0296|consen 54 DDSLVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGE-----FAGELTGHKDSVTCCSFSHDGTLLATGDMSG 128 (399)
T ss_pred ccceeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCc-----ceeEecCCCCceEEEEEccCceEEEecCCCc
Confidence 34567899999999999999999999999999999999998763 4555667889999999999999999999999
Q ss_pred eEEEEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEEEECCCccccceEEeeeccCCC
Q 048012 219 QAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPG 298 (616)
Q Consensus 219 ~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~ 298 (616)
.|+||...++..... +......|..+.|||.+ .+|+.|+.||.|.+|.+.+....+.+ .+|
T Consensus 129 ~v~v~~~stg~~~~~------------~~~e~~dieWl~WHp~a-~illAG~~DGsvWmw~ip~~~~~kv~------~Gh 189 (399)
T KOG0296|consen 129 KVLVFKVSTGGEQWK------------LDQEVEDIEWLKWHPRA-HILLAGSTDGSVWMWQIPSQALCKVM------SGH 189 (399)
T ss_pred cEEEEEcccCceEEE------------eecccCceEEEEecccc-cEEEeecCCCcEEEEECCCcceeeEe------cCC
Confidence 999999987653211 23456778999999966 69999999999999999875332222 356
Q ss_pred CccEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCCCCCceeeec-CCCCCeEEEEEcCCCCeEEEEecCCcEEEEeCCCC
Q 048012 299 RVAVTTCAWDCDGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEK-GHSDDITALKFSSDGRILLSRSFDGSLKVWDLRKM 377 (616)
Q Consensus 299 ~~~v~~~~~sp~g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~-~h~~~V~~l~~spdg~~l~s~s~Dg~v~lwd~~~~ 377 (616)
..++++-.|.|+|+.+++|..||+|++||+.++ .++..+. .......++.++..+..++.|+.++.+++-+..++
T Consensus 190 ~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg----~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sg 265 (399)
T KOG0296|consen 190 NSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTG----QPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSG 265 (399)
T ss_pred CCCcccccccCCCceEEEEecCceEEEEecCCC----ceeEEecccccCcCCccccccccceeEeccCCccEEEEccccc
Confidence 778999999999999999999999999999987 3443333 33456788999999999999999999998887765
Q ss_pred CCcceEecC-C-----CCCC---cceeEEECCCCCEEEEeeccccccCCCceEEEEeCCCCceEEEEecCCCCCeEEEEE
Q 048012 378 KEPLKVFED-L-----PNNY---AQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREKLELVSRVGISPACSVVQCAW 448 (616)
Q Consensus 378 ~~~~~~~~~-~-----~~~~---~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~ 448 (616)
+. +..... . .+.. .|-++.|+..=.+.|+|+ -||+|.|||+...++.+.. .|...|+.+.|
T Consensus 266 KV-v~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~-------vdG~i~iyD~a~~~~R~~c--~he~~V~~l~w 335 (399)
T KOG0296|consen 266 KV-VNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGS-------VDGTIAIYDLAASTLRHIC--EHEDGVTKLKW 335 (399)
T ss_pred eE-EEecCCCCccccccchhhhhhhhhcccccccchhhccc-------ccceEEEEecccchhheec--cCCCceEEEEE
Confidence 43 222221 0 1112 244455566677888888 8999999999988876665 46677999999
Q ss_pred cCCCCcEEEEeccC---------------CCCceEEEecccCCCCCcEEEEecCCcceecccc
Q 048012 449 HPKLNQIFATAGDK---------------SQGGTHILYDPRLSERGALVCVARAPRKKSVDDF 496 (616)
Q Consensus 449 ~p~~~~l~~~~~d~---------------~~~~~~~v~~~~~s~~g~~l~s~~~d~~~~~wd~ 496 (616)
-+ ..+|+++|.++ ..||...|++++++|+++++++++.|++.+|+++
T Consensus 336 ~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v 397 (399)
T KOG0296|consen 336 LN-TDYLLTACANGKVRQWDARTGQLKFTYTGHQMGILDFALSPQKRLVVTVSDDNTALVFEV 397 (399)
T ss_pred cC-cchheeeccCceEEeeeccccceEEEEecCchheeEEEEcCCCcEEEEecCCCeEEEEec
Confidence 99 68999999966 3466666677888999999999999999988875
No 13
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=5e-34 Score=277.51 Aligned_cols=319 Identities=21% Similarity=0.277 Sum_probs=248.0
Q ss_pred CCCcceEEecCCcccEEEEEECCCCCEEEEEEcCCcEEEEeCCCCccccccceecCCCCCCceEEEEecCCCCeEEEEeC
Q 048012 137 IPMSNEIVLKGHTKIVSALAVDHSGSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSDRFLCVTG 216 (616)
Q Consensus 137 ~p~~~~~~l~~H~~~V~~v~~sp~g~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~s~ 216 (616)
.|++...++..|++-|+|++|+|||.++||.+.||+|.|||=.+++. +..+.. ...|.+.|.+|+|+||+.+|++++.
T Consensus 178 PPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~-vg~l~~-~~aHkGsIfalsWsPDs~~~~T~Sa 255 (603)
T KOG0318|consen 178 PPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEK-VGELED-SDAHKGSIFALSWSPDSTQFLTVSA 255 (603)
T ss_pred CCeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccE-EEEecC-CCCccccEEEEEECCCCceEEEecC
Confidence 36667778899999999999999999999999999999999776532 111211 4568889999999999999999999
Q ss_pred CCeEEEEECCCCeeeeE-eeCce----------------------e--------EeecccCCCcccceEEEEEcCCCCCE
Q 048012 217 SAQAKIYDRDGLTLGEF-VKGDM----------------------Y--------IRDLKNTKGHICGLTCGEWHPKTKET 265 (616)
Q Consensus 217 d~~v~vwd~~~~~~~~~-~~~~~----------------------~--------~~~~~~~~~h~~~v~~~~~~p~~~~~ 265 (616)
|.+++|||+....+... ..+.. + ...++.+.||...|+++..++++ .+
T Consensus 256 Dkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~-~~ 334 (603)
T KOG0318|consen 256 DKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDG-KT 334 (603)
T ss_pred CceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCC-CE
Confidence 99999999986654322 11110 0 01345678999999999999988 69
Q ss_pred EEEEeCCCCEEEEECCCccccce--------EEeeecc------------------------------------------
Q 048012 266 ILTSSEDGSLRIWDVNEFKSQKQ--------VIKPKLA------------------------------------------ 295 (616)
Q Consensus 266 l~s~s~Dg~v~iwd~~~~~~~~~--------~~~~~~~------------------------------------------ 295 (616)
|++|+.||.|.-||..++..... +......
T Consensus 335 i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~ 414 (603)
T KOG0318|consen 335 IYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVL 414 (603)
T ss_pred EEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEc
Confidence 99999999999999865432100 0000000
Q ss_pred CC-------------------------CCccEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCCCCCceeeecCCCCCeEE
Q 048012 296 RP-------------------------GRVAVTTCAWDCDGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHSDDITA 350 (616)
Q Consensus 296 ~~-------------------------~~~~v~~~~~sp~g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~ 350 (616)
.. -.....+++++|++..+++|+.||.|+||.+... .......+..|.++|++
T Consensus 415 ~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~--~l~ee~~~~~h~a~iT~ 492 (603)
T KOG0318|consen 415 SDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGD--ELKEEAKLLEHRAAITD 492 (603)
T ss_pred CCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCC--cccceeeeecccCCceE
Confidence 00 0013567789999999999999999999999875 33455567789999999
Q ss_pred EEEcCCCCeEEEEecCCcEEEEeCCCCCCcceEecCCCCCCcceeEEECCCCCEEEEeeccccccCCCceEEEEeCCCCc
Q 048012 351 LKFSSDGRILLSRSFDGSLKVWDLRKMKEPLKVFEDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREKLE 430 (616)
Q Consensus 351 l~~spdg~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~~~ 430 (616)
|+||||+.+||++...+.+.+||+.+.......+.. |...|.+++|+|+..+||+|+ .|..|.||++....
T Consensus 493 vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~w~F--HtakI~~~aWsP~n~~vATGS-------lDt~Viiysv~kP~ 563 (603)
T KOG0318|consen 493 VAYSPDGAYLAAGDASRKVVLYDVASREVKTNRWAF--HTAKINCVAWSPNNKLVATGS-------LDTNVIIYSVKKPA 563 (603)
T ss_pred EEECCCCcEEEEeccCCcEEEEEcccCceecceeee--eeeeEEEEEeCCCceEEEecc-------ccceEEEEEccChh
Confidence 999999999999999999999999875543333333 445699999999999999999 89999999999876
Q ss_pred eEEEEecCCCCCeEEEEEcCCCCcEEEEeccCCCCceEEEeccc
Q 048012 431 LVSRVGISPACSVVQCAWHPKLNQIFATAGDKSQGGTHILYDPR 474 (616)
Q Consensus 431 ~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~~~~~~~v~~~~ 474 (616)
....++..|...|+.+.|-.+ +.+++++. +..+++|.+.
T Consensus 564 ~~i~iknAH~~gVn~v~wlde-~tvvSsG~----Da~iK~W~v~ 602 (603)
T KOG0318|consen 564 KHIIIKNAHLGGVNSVAWLDE-STVVSSGQ----DANIKVWNVT 602 (603)
T ss_pred hheEeccccccCceeEEEecC-ceEEeccC----cceeEEeccc
Confidence 666666667767999999876 66777776 7788888865
No 14
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=3.7e-34 Score=275.05 Aligned_cols=279 Identities=22% Similarity=0.390 Sum_probs=237.2
Q ss_pred cccEEEEEECCCCCEEEEEEcCCcEEEEeCCCCccccccceecCCCCCCceEEEEecCCCCeEEEEeCCCeEEEEECCCC
Q 048012 149 TKIVSALAVDHSGSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSDRFLCVTGSAQAKIYDRDGL 228 (616)
Q Consensus 149 ~~~V~~v~~sp~g~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~s~d~~v~vwd~~~~ 228 (616)
++.|++++|+.+|.+||+|+.||.+|||+..+. .......|..+|.+|.|+.+|++|++++.|+++.|||...+
T Consensus 235 nkdVT~L~Wn~~G~~LatG~~~G~~riw~~~G~------l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g 308 (524)
T KOG0273|consen 235 NKDVTSLDWNNDGTLLATGSEDGEARIWNKDGN------LISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTG 308 (524)
T ss_pred cCCcceEEecCCCCeEEEeecCcEEEEEecCch------hhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCc
Confidence 468999999999999999999999999998763 33444568889999999999999999999999999998877
Q ss_pred eeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEEEECCCccccceEEeeeccCCCCccEEEEEEC
Q 048012 229 TLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWD 308 (616)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 308 (616)
+... .+.-|...-..+.|-.+ ..|++++.|+.|+|+-+........+. +|...|.++.|+
T Consensus 309 ~~~q------------~f~~~s~~~lDVdW~~~--~~F~ts~td~~i~V~kv~~~~P~~t~~------GH~g~V~alk~n 368 (524)
T KOG0273|consen 309 TVKQ------------QFEFHSAPALDVDWQSN--DEFATSSTDGCIHVCKVGEDRPVKTFI------GHHGEVNALKWN 368 (524)
T ss_pred eEEE------------eeeeccCCccceEEecC--ceEeecCCCceEEEEEecCCCcceeee------cccCceEEEEEC
Confidence 6532 24456666677888865 479999999999999998766666554 466699999999
Q ss_pred CCCCeEEEEeCCCcEEEEeCCCCCCCCCceeeecCCCCCeEEEEEcCCC---------CeEEEEecCCcEEEEeCCCCCC
Q 048012 309 CDGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHSDDITALKFSSDG---------RILLSRSFDGSLKVWDLRKMKE 379 (616)
Q Consensus 309 p~g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~spdg---------~~l~s~s~Dg~v~lwd~~~~~~ 379 (616)
|.|.+|++++.|++++||.+... .....+.+|...|+.+.|+|+| ..|++++.|++|++||+..+ .
T Consensus 369 ~tg~LLaS~SdD~TlkiWs~~~~----~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~g-v 443 (524)
T KOG0273|consen 369 PTGSLLASCSDDGTLKIWSMGQS----NSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESG-V 443 (524)
T ss_pred CCCceEEEecCCCeeEeeecCCC----cchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCC-c
Confidence 99999999999999999998755 6788899999999999999964 47999999999999999964 5
Q ss_pred cceEecCCCCCCcceeEEECCCCCEEEEeeccccccCCCceEEEEeCCCCceEEEEecCCCCCeEEEEEcCCCCcEEEEe
Q 048012 380 PLKVFEDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREKLELVSRVGISPACSVVQCAWHPKLNQIFATA 459 (616)
Q Consensus 380 ~~~~~~~~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~ 459 (616)
++..+.. |..+|.+++|+|+|+||++|+ .||.|+||+++++++++.+. ..+.|..++|+.+++.|.++.
T Consensus 444 ~i~~f~k--H~~pVysvafS~~g~ylAsGs-------~dg~V~iws~~~~~l~~s~~--~~~~Ifel~Wn~~G~kl~~~~ 512 (524)
T KOG0273|consen 444 PIHTLMK--HQEPVYSVAFSPNGRYLASGS-------LDGCVHIWSTKTGKLVKSYQ--GTGGIFELCWNAAGDKLGACA 512 (524)
T ss_pred eeEeecc--CCCceEEEEecCCCcEEEecC-------CCCeeEeccccchheeEeec--CCCeEEEEEEcCCCCEEEEEe
Confidence 5666654 556699999999999999999 89999999999999999985 356699999999998888888
Q ss_pred ccCCCCceEEEecc
Q 048012 460 GDKSQGGTHILYDP 473 (616)
Q Consensus 460 ~d~~~~~~~~v~~~ 473 (616)
+ ++.+.|-++
T Consensus 513 s----d~~vcvldl 522 (524)
T KOG0273|consen 513 S----DGSVCVLDL 522 (524)
T ss_pred c----CCCceEEEe
Confidence 7 455555544
No 15
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=5.3e-34 Score=258.55 Aligned_cols=278 Identities=18% Similarity=0.269 Sum_probs=234.6
Q ss_pred ecCCCCCCceEEEEecCCCCeEEEEeCCCeEEEEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEE
Q 048012 190 QLEPSEGHQVRNLSWSPTSDRFLCVTGSAQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTS 269 (616)
Q Consensus 190 ~~~~~~~~~v~~l~~sp~g~~l~~~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~ 269 (616)
....+|...|+++.|+++.++|++++.||.+.|||.-+... ...+.-....|..++|+|.+ +++++|
T Consensus 49 r~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK------------~haipl~s~WVMtCA~sPSg-~~VAcG 115 (343)
T KOG0286|consen 49 RTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNK------------VHAIPLPSSWVMTCAYSPSG-NFVACG 115 (343)
T ss_pred EEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccc------------eeEEecCceeEEEEEECCCC-CeEEec
Confidence 45557888999999999999999999999999999664432 11234456789999999987 699999
Q ss_pred eCCCCEEEEECCCccccceEEeeeccCCCCccEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCCCCCceeeecCCCCCeE
Q 048012 270 SEDGSLRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWDCDGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHSDDIT 349 (616)
Q Consensus 270 s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~ 349 (616)
+.|+...||++.+..............+|...+.||.|-. ...|++++.|.++.+||+.++ ..+..+.+|.+.|.
T Consensus 116 GLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~d-D~~ilT~SGD~TCalWDie~g----~~~~~f~GH~gDV~ 190 (343)
T KOG0286|consen 116 GLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLD-DNHILTGSGDMTCALWDIETG----QQTQVFHGHTGDVM 190 (343)
T ss_pred CcCceeEEEecccccccccceeeeeecCccceeEEEEEcC-CCceEecCCCceEEEEEcccc----eEEEEecCCcccEE
Confidence 9999999999986533333333333457888999999987 456889999999999999988 78889999999999
Q ss_pred EEEEcC-CCCeEEEEecCCcEEEEeCCCCCCcceEecCCCCCCcceeEEECCCCCEEEEeeccccccCCCceEEEEeCCC
Q 048012 350 ALKFSS-DGRILLSRSFDGSLKVWDLRKMKEPLKVFEDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREK 428 (616)
Q Consensus 350 ~l~~sp-dg~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~ 428 (616)
+|.++| +++.+++|+.|++.+|||+|.+ .+++.|.+|. ..|.+|+|.|+|.-+++|+ .|++.++||++.
T Consensus 191 slsl~p~~~ntFvSg~cD~~aklWD~R~~-~c~qtF~ghe--sDINsv~ffP~G~afatGS-------DD~tcRlyDlRa 260 (343)
T KOG0286|consen 191 SLSLSPSDGNTFVSGGCDKSAKLWDVRSG-QCVQTFEGHE--SDINSVRFFPSGDAFATGS-------DDATCRLYDLRA 260 (343)
T ss_pred EEecCCCCCCeEEecccccceeeeeccCc-ceeEeecccc--cccceEEEccCCCeeeecC-------CCceeEEEeecC
Confidence 999999 9999999999999999999975 6688887755 4599999999999999999 999999999999
Q ss_pred CceEEEEecCC-CCCeEEEEEcCCCCcEEEEeccC---------------CCCceEEEecccCCCCCcEEEEecCCccee
Q 048012 429 LELVSRVGISP-ACSVVQCAWHPKLNQIFATAGDK---------------SQGGTHILYDPRLSERGALVCVARAPRKKS 492 (616)
Q Consensus 429 ~~~~~~~~~~~-~~~v~~~~~~p~~~~l~~~~~d~---------------~~~~~~~v~~~~~s~~g~~l~s~~~d~~~~ 492 (616)
.+.+..+.... ...|++++|+-.|+.|++|..|. +.||..+|-.+..+|||..||+++-|..++
T Consensus 261 D~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~av~TgSWDs~lr 340 (343)
T KOG0286|consen 261 DQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDGMAVATGSWDSTLR 340 (343)
T ss_pred CcEEeeeccCcccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEeeccCCeeEEEEECCCCcEEEecchhHhee
Confidence 98888875432 26799999999999999997754 346666666688999999999999999999
Q ss_pred ccc
Q 048012 493 VDD 495 (616)
Q Consensus 493 ~wd 495 (616)
||.
T Consensus 341 iW~ 343 (343)
T KOG0286|consen 341 IWA 343 (343)
T ss_pred ecC
Confidence 994
No 16
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=1.3e-34 Score=268.99 Aligned_cols=301 Identities=19% Similarity=0.329 Sum_probs=241.8
Q ss_pred CCCCcceEEecCCcccEEEEEECCCCCEEEEEEcCCcEEEEeCCCCccccccceecCCCCCCceEEEEecCCCCeEEEEe
Q 048012 136 QIPMSNEIVLKGHTKIVSALAVDHSGSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSDRFLCVT 215 (616)
Q Consensus 136 ~~p~~~~~~l~~H~~~V~~v~~sp~g~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~s 215 (616)
..|.+...++.+|.+.|.||++.|...+|+||+.|++|+|||+.++ .+.....+|-..|..+++|+...||++++
T Consensus 138 HapwKl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg-----~LkltltGhi~~vr~vavS~rHpYlFs~g 212 (460)
T KOG0285|consen 138 HAPWKLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATG-----QLKLTLTGHIETVRGVAVSKRHPYLFSAG 212 (460)
T ss_pred cCcceehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccC-----eEEEeecchhheeeeeeecccCceEEEec
Confidence 4566667789999999999999999999999999999999999986 44555566777899999999999999999
Q ss_pred CCCeEEEEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEEEECCCccccceEEeeecc
Q 048012 216 GSAQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLA 295 (616)
Q Consensus 216 ~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~ 295 (616)
.|++|+.||+...++ ++.+.||.+.|.|++.+|.- .+|++|+.|.++||||+++...+..+
T Consensus 213 edk~VKCwDLe~nkv------------IR~YhGHlS~V~~L~lhPTl-dvl~t~grDst~RvWDiRtr~~V~~l------ 273 (460)
T KOG0285|consen 213 EDKQVKCWDLEYNKV------------IRHYHGHLSGVYCLDLHPTL-DVLVTGGRDSTIRVWDIRTRASVHVL------ 273 (460)
T ss_pred CCCeeEEEechhhhh------------HHHhccccceeEEEeccccc-eeEEecCCcceEEEeeecccceEEEe------
Confidence 999999999997765 66789999999999999976 69999999999999999986554433
Q ss_pred CCCCccEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCCCCCceeeecCCCCCeEEEEEcCCCCeEEEEecCCcEEEEeCC
Q 048012 296 RPGRVAVTTCAWDCDGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHSDDITALKFSSDGRILLSRSFDGSLKVWDLR 375 (616)
Q Consensus 296 ~~~~~~v~~~~~sp~g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~v~lwd~~ 375 (616)
.+|+..|.++.+.|-.-.+++|+.|++|++||++.+ +....+..|...|.+++.+|....+|+++.|. |+-|++-
T Consensus 274 ~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~ag----kt~~tlt~hkksvral~lhP~e~~fASas~dn-ik~w~~p 348 (460)
T KOG0285|consen 274 SGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAG----KTMITLTHHKKSVRALCLHPKENLFASASPDN-IKQWKLP 348 (460)
T ss_pred cCCCCcceeEEeecCCCceEEecCCceEEEeeeccC----ceeEeeecccceeeEEecCCchhhhhccCCcc-ceeccCC
Confidence 467779999999998888999999999999999987 67888999999999999999999999999775 8999998
Q ss_pred CCCCcceEecCCCCCCcceeEEECCCCCEEEEeeccccccCCCceEEEEeCCCCceEEEEecCCCCCeEEEEEcCCCCcE
Q 048012 376 KMKEPLKVFEDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREKLELVSRVGISPACSVVQCAWHPKLNQI 455 (616)
Q Consensus 376 ~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l 455 (616)
.+.. +..+.. +...+.+++...|+ ++++|+ ..|.|.+||.+++-..+.+..... |
T Consensus 349 ~g~f-~~nlsg--h~~iintl~~nsD~-v~~~G~-------dng~~~fwdwksg~nyQ~~~t~vq---------p----- 403 (460)
T KOG0285|consen 349 EGEF-LQNLSG--HNAIINTLSVNSDG-VLVSGG-------DNGSIMFWDWKSGHNYQRGQTIVQ---------P----- 403 (460)
T ss_pred ccch-hhcccc--ccceeeeeeeccCc-eEEEcC-------CceEEEEEecCcCccccccccccc---------C-----
Confidence 7543 333444 44558889888776 556666 799999999998876655421100 0
Q ss_pred EEEeccCCCCceEEEecccCCCCCcEEEEecCCcceecccc
Q 048012 456 FATAGDKSQGGTHILYDPRLSERGALVCVARAPRKKSVDDF 496 (616)
Q Consensus 456 ~~~~~d~~~~~~~~v~~~~~s~~g~~l~s~~~d~~~~~wd~ 496 (616)
|+- ....-||...|...|..|+++.+|++|++|.-
T Consensus 404 --GSl----~sEagI~as~fDktg~rlit~eadKtIk~~ke 438 (460)
T KOG0285|consen 404 --GSL----ESEAGIFASCFDKTGSRLITGEADKTIKMYKE 438 (460)
T ss_pred --Ccc----ccccceeEEeecccCceEEeccCCcceEEEec
Confidence 000 11222344445556777777777777777754
No 17
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=5.1e-34 Score=257.24 Aligned_cols=273 Identities=20% Similarity=0.267 Sum_probs=225.6
Q ss_pred eecCCCCCCceEEEEecCC-CCeEEEEeCCCeEEEEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEE
Q 048012 189 RQLEPSEGHQVRNLSWSPT-SDRFLCVTGSAQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETIL 267 (616)
Q Consensus 189 ~~~~~~~~~~v~~l~~sp~-g~~l~~~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~ 267 (616)
+.....|...|..++..+. .+.|++++.|..+.+|++..... .+-..++.+.||...|..+..++++ ++++
T Consensus 8 ~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~-------~~G~~~r~~~GHsH~v~dv~~s~dg-~~al 79 (315)
T KOG0279|consen 8 RGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDI-------KYGVPVRRLTGHSHFVSDVVLSSDG-NFAL 79 (315)
T ss_pred eeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCcc-------ccCceeeeeeccceEecceEEccCC-ceEE
Confidence 3445567888999999887 45688899999999999886532 1223466789999999999999988 6999
Q ss_pred EEeCCCCEEEEECCCccccceEEeeeccCCCCccEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCCCCCceeeec--CCC
Q 048012 268 TSSEDGSLRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWDCDGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEK--GHS 345 (616)
Q Consensus 268 s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~--~h~ 345 (616)
+++.|+++|+||+.+++....+. +|...|.+++|+++.+.|++|+.|.+|.+|++... +...+. .|.
T Consensus 80 S~swD~~lrlWDl~~g~~t~~f~------GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~-----ck~t~~~~~~~ 148 (315)
T KOG0279|consen 80 SASWDGTLRLWDLATGESTRRFV------GHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGV-----CKYTIHEDSHR 148 (315)
T ss_pred eccccceEEEEEecCCcEEEEEE------ecCCceEEEEecCCCceeecCCCcceeeeeeeccc-----EEEEEecCCCc
Confidence 99999999999999886655554 45557999999999999999999999999999864 333333 337
Q ss_pred CCeEEEEEcCC--CCeEEEEecCCcEEEEeCCCCCCcceEecCCCCCCcceeEEECCCCCEEEEeeccccccCCCceEEE
Q 048012 346 DDITALKFSSD--GRILLSRSFDGSLKVWDLRKMKEPLKVFEDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCF 423 (616)
Q Consensus 346 ~~V~~l~~spd--g~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~i 423 (616)
..|+|+.|+|+ ..+|++++.|++|++||+++.+. ...+-+ +...++.+++||||.++++|+ .||.+.+
T Consensus 149 ~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l-~~~~~g--h~~~v~t~~vSpDGslcasGg-------kdg~~~L 218 (315)
T KOG0279|consen 149 EWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQL-RTTFIG--HSGYVNTVTVSPDGSLCASGG-------KDGEAML 218 (315)
T ss_pred CcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcch-hhcccc--ccccEEEEEECCCCCEEecCC-------CCceEEE
Confidence 89999999997 78999999999999999997543 334434 445699999999999999999 9999999
Q ss_pred EeCCCCceEEEEecCCCCCeEEEEEcCCCCcEEEEeccCCCCceEEEec----------------------------ccC
Q 048012 424 YDREKLELVSRVGISPACSVVQCAWHPKLNQIFATAGDKSQGGTHILYD----------------------------PRL 475 (616)
Q Consensus 424 wd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~~~~~~~v~~----------------------------~~~ 475 (616)
||+..++.++.+ .+...|.+++|+|+.-.|.++. +..++||+ ++|
T Consensus 219 wdL~~~k~lysl--~a~~~v~sl~fspnrywL~~at-----~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaw 291 (315)
T KOG0279|consen 219 WDLNEGKNLYSL--EAFDIVNSLCFSPNRYWLCAAT-----ATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAW 291 (315)
T ss_pred EEccCCceeEec--cCCCeEeeEEecCCceeEeecc-----CCceEEEeccchhhhhhccccccccccccCCcEEEEEEE
Confidence 999999998888 4668899999999977777776 45688887 567
Q ss_pred CCCCcEEEEecCCcceeccccc
Q 048012 476 SERGALVCVARAPRKKSVDDFE 497 (616)
Q Consensus 476 s~~g~~l~s~~~d~~~~~wd~~ 497 (616)
|+||..|..+-.|+.|++|.+.
T Consensus 292 s~dG~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 292 SADGQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred cCCCcEEEeeecCCcEEEEEee
Confidence 8888888888888888888763
No 18
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=2e-34 Score=294.12 Aligned_cols=264 Identities=22% Similarity=0.350 Sum_probs=224.2
Q ss_pred cCCCCCcceEEecCCcccEEEEEECCCCCEEEEEEcCCcEEEEeCCCCc-------ccc-------------------cc
Q 048012 134 RHQIPMSNEIVLKGHTKIVSALAVDHSGSRVLSGSYDYTVRMYDFQGMN-------SRL-------------------QS 187 (616)
Q Consensus 134 ~~~~p~~~~~~l~~H~~~V~~v~~sp~g~~lasgs~Dg~i~iwd~~~~~-------~~~-------------------~~ 187 (616)
+..+|....+++..-...|+|+.|++++.+||.|-.|..|++|.+.... ..+ ..
T Consensus 363 ~~~lpSic~YT~~nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~ 442 (707)
T KOG0263|consen 363 RNSLPSICMYTFHNTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSG 442 (707)
T ss_pred CCCCCcEEEEEEEEcCCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCc
Confidence 3456666777777778899999999999999999999999999987421 000 01
Q ss_pred ceecCCCCCCceEEEEecCCCCeEEEEeCCCeEEEEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEE
Q 048012 188 FRQLEPSEGHQVRNLSWSPTSDRFLCVTGSAQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETIL 267 (616)
Q Consensus 188 ~~~~~~~~~~~v~~l~~sp~g~~l~~~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~ 267 (616)
......+|.++|+.+.|+|+.++|++++.|++||+|.+.+... +...+||..+|+++.|+|.| .+|+
T Consensus 443 ~~~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~------------~V~y~GH~~PVwdV~F~P~G-yYFa 509 (707)
T KOG0263|consen 443 TSRTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSC------------LVIYKGHLAPVWDVQFAPRG-YYFA 509 (707)
T ss_pred eeEEeecCCCceeeeeecccccceeeccCCcceeeeeccccee------------EEEecCCCcceeeEEecCCc-eEEE
Confidence 1223457889999999999999999999999999999997764 34468999999999999987 7999
Q ss_pred EEeCCCCEEEEECCCccccceEEeeeccCCCCccEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCCCCCceeeecCCCCC
Q 048012 268 TSSEDGSLRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWDCDGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHSDD 347 (616)
Q Consensus 268 s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~h~~~ 347 (616)
|++.|++.++|..........+ .+|-..|.|+.|+|+.+++++|+.|.+||+||+.+| ..++.+.+|.++
T Consensus 510 tas~D~tArLWs~d~~~PlRif------aghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G----~~VRiF~GH~~~ 579 (707)
T KOG0263|consen 510 TASHDQTARLWSTDHNKPLRIF------AGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTG----NSVRIFTGHKGP 579 (707)
T ss_pred ecCCCceeeeeecccCCchhhh------cccccccceEEECCcccccccCCCCceEEEEEcCCC----cEEEEecCCCCc
Confidence 9999999999998875544433 245557999999999999999999999999999988 678999999999
Q ss_pred eEEEEEcCCCCeEEEEecCCcEEEEeCCCCCCcceEecCCCCCCcceeEEECCCCCEEEEeeccccccCCCceEEEEeCC
Q 048012 348 ITALKFSSDGRILLSRSFDGSLKVWDLRKMKEPLKVFEDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDRE 427 (616)
Q Consensus 348 V~~l~~spdg~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~ 427 (616)
|++|+|||+|++|++|+.||.|+|||+.++. ++..+.+| ...|.++.||.+|..|++|+ .|+.|++||+.
T Consensus 580 V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~-~v~~l~~H--t~ti~SlsFS~dg~vLasgg-------~DnsV~lWD~~ 649 (707)
T KOG0263|consen 580 VTALAFSPCGRYLASGDEDGLIKIWDLANGS-LVKQLKGH--TGTIYSLSFSRDGNVLASGG-------ADNSVRLWDLT 649 (707)
T ss_pred eEEEEEcCCCceEeecccCCcEEEEEcCCCc-chhhhhcc--cCceeEEEEecCCCEEEecC-------CCCeEEEEEch
Confidence 9999999999999999999999999999754 45555565 55699999999999999999 89999999976
Q ss_pred CCc
Q 048012 428 KLE 430 (616)
Q Consensus 428 ~~~ 430 (616)
...
T Consensus 650 ~~~ 652 (707)
T KOG0263|consen 650 KVI 652 (707)
T ss_pred hhc
Confidence 543
No 19
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=1.9e-33 Score=270.21 Aligned_cols=324 Identities=20% Similarity=0.305 Sum_probs=252.6
Q ss_pred CCCCcceEEecCCcccEEEEEECCCCC-EEEEEEcCCcEEEEeCCCCcc---cccccee------cCCCCCCceEEEEec
Q 048012 136 QIPMSNEIVLKGHTKIVSALAVDHSGS-RVLSGSYDYTVRMYDFQGMNS---RLQSFRQ------LEPSEGHQVRNLSWS 205 (616)
Q Consensus 136 ~~p~~~~~~l~~H~~~V~~v~~sp~g~-~lasgs~Dg~i~iwd~~~~~~---~~~~~~~------~~~~~~~~v~~l~~s 205 (616)
.+|......+. |...|.+++|+|-.. +|++|+.|-+.|+|++..... ....++. ........|++|+|+
T Consensus 166 ~I~~~~~kvl~-~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn 244 (524)
T KOG0273|consen 166 EIPSSKAKVLR-HESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWN 244 (524)
T ss_pred cccccceeecc-CCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEec
Confidence 45655555665 999999999999876 999999999999999874110 0001111 111223459999999
Q ss_pred CCCCeEEEEeCCCeEEEEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEEEECCCccc
Q 048012 206 PTSDRFLCVTGSAQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKS 285 (616)
Q Consensus 206 p~g~~l~~~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~ 285 (616)
.+|..|++|+.+|.++||+..+.. +..+..|.++|.++.|+..+ .+|++++.|+++.|||..++..
T Consensus 245 ~~G~~LatG~~~G~~riw~~~G~l-------------~~tl~~HkgPI~slKWnk~G-~yilS~~vD~ttilwd~~~g~~ 310 (524)
T KOG0273|consen 245 NDGTLLATGSEDGEARIWNKDGNL-------------ISTLGQHKGPIFSLKWNKKG-TYILSGGVDGTTILWDAHTGTV 310 (524)
T ss_pred CCCCeEEEeecCcEEEEEecCchh-------------hhhhhccCCceEEEEEcCCC-CEEEeccCCccEEEEeccCceE
Confidence 999999999999999999999875 45578899999999999987 6999999999999999987665
Q ss_pred cceEEeeeccCCCCccEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCCCCCceeeecCCCCCeEEEEEcCCCCeEEEEec
Q 048012 286 QKQVIKPKLARPGRVAVTTCAWDCDGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHSDDITALKFSSDGRILLSRSF 365 (616)
Q Consensus 286 ~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~ 365 (616)
...+... ..+-..+.|-. ...+++.+.||.|+++.+... .++.++.+|.+.|.+|.|+|.|.+|++++.
T Consensus 311 ~q~f~~~------s~~~lDVdW~~-~~~F~ts~td~~i~V~kv~~~----~P~~t~~GH~g~V~alk~n~tg~LLaS~Sd 379 (524)
T KOG0273|consen 311 KQQFEFH------SAPALDVDWQS-NDEFATSSTDGCIHVCKVGED----RPVKTFIGHHGEVNALKWNPTGSLLASCSD 379 (524)
T ss_pred EEeeeec------cCCccceEEec-CceEeecCCCceEEEEEecCC----CcceeeecccCceEEEEECCCCceEEEecC
Confidence 5444322 22335677754 456888999999999999754 678888899999999999999999999999
Q ss_pred CCcEEEEeCCCCCCcceEecCCCCCCcceeEEECCCC---------CEEEEeeccccccCCCceEEEEeCCCCceEEEEe
Q 048012 366 DGSLKVWDLRKMKEPLKVFEDLPNNYAQTNVAFSPDE---------QLFLTGTSVERESTTGGLLCFYDREKLELVSRVG 436 (616)
Q Consensus 366 Dg~v~lwd~~~~~~~~~~~~~~~~~~~v~~v~fspdg---------~~l~~gs~~~~~~~~dg~i~iwd~~~~~~~~~~~ 436 (616)
|++++||..... .....+..| ...|..+.|+|+| ..|++++ .|++|++||+..+.++.++.
T Consensus 380 D~TlkiWs~~~~-~~~~~l~~H--skei~t~~wsp~g~v~~n~~~~~~l~sas-------~dstV~lwdv~~gv~i~~f~ 449 (524)
T KOG0273|consen 380 DGTLKIWSMGQS-NSVHDLQAH--SKEIYTIKWSPTGPVTSNPNMNLMLASAS-------FDSTVKLWDVESGVPIHTLM 449 (524)
T ss_pred CCeeEeeecCCC-cchhhhhhh--ccceeeEeecCCCCccCCCcCCceEEEee-------cCCeEEEEEccCCceeEeec
Confidence 999999997653 334455444 3448899999854 4677777 89999999999999999985
Q ss_pred cCCCCCeEEEEEcCCCCcEEEEeccC--------------CCCceEEEecccCCCCCcEEEEecCCcceecccc
Q 048012 437 ISPACSVVQCAWHPKLNQIFATAGDK--------------SQGGTHILYDPRLSERGALVCVARAPRKKSVDDF 496 (616)
Q Consensus 437 ~~~~~~v~~~~~~p~~~~l~~~~~d~--------------~~~~~~~v~~~~~s~~g~~l~s~~~d~~~~~wd~ 496 (616)
.|..+|.+++|+|++.++++|+-|+ ...+...|+.+.|+.+|.+|+.+-+|+.+.+-|+
T Consensus 450 -kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~~~~Ifel~Wn~~G~kl~~~~sd~~vcvldl 522 (524)
T KOG0273|consen 450 -KHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQGTGGIFELCWNAAGDKLGACASDGSVCVLDL 522 (524)
T ss_pred -cCCCceEEEEecCCCcEEEecCCCCeeEeccccchheeEeecCCCeEEEEEEcCCCCEEEEEecCCCceEEEe
Confidence 4788999999999999999999854 1222233455667777777777777777666554
No 20
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=6.4e-34 Score=250.28 Aligned_cols=293 Identities=19% Similarity=0.349 Sum_probs=243.0
Q ss_pred CCCCcceEEecCCcccEEEEEECCCCCEEEEEEcCCcEEEEeCCCCccccccceecCCCCCCceEEEEecCCCCeEEEEe
Q 048012 136 QIPMSNEIVLKGHTKIVSALAVDHSGSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSDRFLCVT 215 (616)
Q Consensus 136 ~~p~~~~~~l~~H~~~V~~v~~sp~g~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~s 215 (616)
..|.....+|..|.++|.++.|+-+|+|.++++.|.+||+|+.-.+ .+......|++.|..++.+.+...|++++
T Consensus 4 e~ptkr~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg-----~liktYsghG~EVlD~~~s~Dnskf~s~G 78 (307)
T KOG0316|consen 4 ELPTKRLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRG-----ALIKTYSGHGHEVLDAALSSDNSKFASCG 78 (307)
T ss_pred cCcchhceeecccccceEEEEEccCCCEEEEcCCCceEEeeccccc-----ceeeeecCCCceeeeccccccccccccCC
Confidence 4566677789999999999999999999999999999999997654 34445567999999999999999999999
Q ss_pred CCCeEEEEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEEEECCCccccceEEeeecc
Q 048012 216 GSAQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLA 295 (616)
Q Consensus 216 ~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~ 295 (616)
+|..|.+||++++++ ++.+.+|...|+.+.|+... .++++|+.|.+||+||.+...... +...
T Consensus 79 gDk~v~vwDV~TGkv------------~Rr~rgH~aqVNtV~fNees-SVv~SgsfD~s~r~wDCRS~s~eP-iQil--- 141 (307)
T KOG0316|consen 79 GDKAVQVWDVNTGKV------------DRRFRGHLAQVNTVRFNEES-SVVASGSFDSSVRLWDCRSRSFEP-IQIL--- 141 (307)
T ss_pred CCceEEEEEcccCee------------eeecccccceeeEEEecCcc-eEEEeccccceeEEEEcccCCCCc-cchh---
Confidence 999999999998875 56689999999999999876 699999999999999998643211 1110
Q ss_pred CCCCccEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCCCCCceeeecCCCCCeEEEEEcCCCCeEEEEecCCcEEEEeCC
Q 048012 296 RPGRVAVTTCAWDCDGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHSDDITALKFSSDGRILLSRSFDGSLKVWDLR 375 (616)
Q Consensus 296 ~~~~~~v~~~~~sp~g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~v~lwd~~ 375 (616)
......|.++..+ +..|++|+.||++|.||++.| ....-..+ .+|+|+.|++|++.++.++.|++|+|.|-.
T Consensus 142 dea~D~V~Si~v~--~heIvaGS~DGtvRtydiR~G----~l~sDy~g--~pit~vs~s~d~nc~La~~l~stlrLlDk~ 213 (307)
T KOG0316|consen 142 DEAKDGVSSIDVA--EHEIVAGSVDGTVRTYDIRKG----TLSSDYFG--HPITSVSFSKDGNCSLASSLDSTLRLLDKE 213 (307)
T ss_pred hhhcCceeEEEec--ccEEEeeccCCcEEEEEeecc----eeehhhcC--CcceeEEecCCCCEEEEeeccceeeecccc
Confidence 1122367777765 678999999999999999987 34444444 579999999999999999999999999987
Q ss_pred CCCCcceEecCCCCCCcceeEEECCCCCEEEEeeccccccCCCceEEEEeCCCCceEEEEecCCCCCeEEEEEcCCCCcE
Q 048012 376 KMKEPLKVFEDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREKLELVSRVGISPACSVVQCAWHPKLNQI 455 (616)
Q Consensus 376 ~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l 455 (616)
+ ++.++.+.+|.+...-..++++.....+++|+ .||.|++||+.....+..+.....--|..+.+||....+
T Consensus 214 t-GklL~sYkGhkn~eykldc~l~qsdthV~sgS-------EDG~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~hp~~~~f 285 (307)
T KOG0316|consen 214 T-GKLLKSYKGHKNMEYKLDCCLNQSDTHVFSGS-------EDGKVYFWDLVDETQISKLSVVSTVIVTDLSCHPTMDDF 285 (307)
T ss_pred h-hHHHHHhcccccceeeeeeeecccceeEEecc-------CCceEEEEEeccceeeeeeccCCceeEEeeecccCccce
Confidence 6 45677788887766667788998999999999 999999999999999999876443448999999999988
Q ss_pred EEEeccCCCCceEEEe
Q 048012 456 FATAGDKSQGGTHILY 471 (616)
Q Consensus 456 ~~~~~d~~~~~~~~v~ 471 (616)
+++. ++...+|
T Consensus 286 ~~A~-----~~~~~~~ 296 (307)
T KOG0316|consen 286 ITAT-----GHGDLFW 296 (307)
T ss_pred eEec-----CCceece
Confidence 8887 4455555
No 21
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=5.4e-33 Score=280.74 Aligned_cols=353 Identities=18% Similarity=0.259 Sum_probs=285.8
Q ss_pred CCCCcceEEecCCcccEEEEEECCCCCEEEEEEcCCcEEEEeCCCCccccccceecCCCCCCceEEEEecCCCCeEEEEe
Q 048012 136 QIPMSNEIVLKGHTKIVSALAVDHSGSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSDRFLCVT 215 (616)
Q Consensus 136 ~~p~~~~~~l~~H~~~V~~v~~sp~g~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~s 215 (616)
..|+....++.+|-..|++|.|+.|.++|++||.|.++|||.+..... .+......|...|...-|..+...|++.+
T Consensus 132 ~~pFvl~r~~~g~fddi~si~Ws~DSr~l~~gsrD~s~rl~~v~~~k~---~~~~~l~gHkd~VvacfF~~~~~~l~tvs 208 (893)
T KOG0291|consen 132 FNPFVLHRTYLGHFDDITSIDWSDDSRLLVTGSRDLSARLFGVDGNKN---LFTYALNGHKDYVVACFFGANSLDLYTVS 208 (893)
T ss_pred cCcceEeeeecCCccceeEEEeccCCceEEeccccceEEEEEeccccc---cceEeccCCCcceEEEEeccCcceEEEEe
Confidence 457777889999999999999999999999999999999999986432 33445567888899999999999999999
Q ss_pred CCCeEEEEECCCCeeeeE---------------eeCce------e-EeecccCCCcccceEEEEEcCCCCCEEEEEeCCC
Q 048012 216 GSAQAKIYDRDGLTLGEF---------------VKGDM------Y-IRDLKNTKGHICGLTCGEWHPKTKETILTSSEDG 273 (616)
Q Consensus 216 ~d~~v~vwd~~~~~~~~~---------------~~~~~------~-~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg 273 (616)
.||.+.+|..+....... ..+.. + ......+......|++.+||+.. ++|+++-..|
T Consensus 209 kdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t-~~lvvgFssG 287 (893)
T KOG0291|consen 209 KDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGT-NLLVVGFSSG 287 (893)
T ss_pred cCceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccCCc-eEEEEEecCC
Confidence 999999998772110000 00000 0 11111223334789999999954 7999999999
Q ss_pred CEEEEECCCccccceEEeeeccCCCCccEEEEEECCCCCeEEEEeCC-CcEEEEeCCCCCCCCCceeeecCCCCCeEEEE
Q 048012 274 SLRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWDCDGKCIAGGIGD-GSIQVWNLKPGWGSRPDIHVEKGHSDDITALK 352 (616)
Q Consensus 274 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~g~~d-g~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~ 352 (616)
...+|.+.....+..+.. .+..|..++|+..|.+||.|+.. |.|.+|+.++. ..+...++|...+++++
T Consensus 288 ~f~LyelP~f~lih~LSi------s~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsE----sYVlKQQgH~~~i~~l~ 357 (893)
T KOG0291|consen 288 EFGLYELPDFNLIHSLSI------SDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSE----SYVLKQQGHSDRITSLA 357 (893)
T ss_pred eeEEEecCCceEEEEeec------ccceeeEEEecccCCEEEEcCCccceEEEEEeecc----ceeeeccccccceeeEE
Confidence 999999988766555432 22379999999999999999865 89999999875 67778899999999999
Q ss_pred EcCCCCeEEEEecCCcEEEEeCCCCCCcceEecCCCCCCcceeEEECCCCCEEEEeeccccccCCCceEEEEeCCCCceE
Q 048012 353 FSSDGRILLSRSFDGSLKVWDLRKMKEPLKVFEDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREKLELV 432 (616)
Q Consensus 353 ~spdg~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~~~~~ 432 (616)
++|||++||+|+.||+|+|||.++ +-++.++..|. ..|+.+.|+..|+.|++.+ -||+|+.||+......
T Consensus 358 YSpDgq~iaTG~eDgKVKvWn~~S-gfC~vTFteHt--s~Vt~v~f~~~g~~llssS-------LDGtVRAwDlkRYrNf 427 (893)
T KOG0291|consen 358 YSPDGQLIATGAEDGKVKVWNTQS-GFCFVTFTEHT--SGVTAVQFTARGNVLLSSS-------LDGTVRAWDLKRYRNF 427 (893)
T ss_pred ECCCCcEEEeccCCCcEEEEeccC-ceEEEEeccCC--CceEEEEEEecCCEEEEee-------cCCeEEeeeeccccee
Confidence 999999999999999999999986 45677777654 5599999999999999999 9999999999999999
Q ss_pred EEEecCCCCCeEEEEEcCCCCcEEEEeccC----------------CCCceEEEecccCCCCCcEEEEecCCcceecccc
Q 048012 433 SRVGISPACSVVQCAWHPKLNQIFATAGDK----------------SQGGTHILYDPRLSERGALVCVARAPRKKSVDDF 496 (616)
Q Consensus 433 ~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~----------------~~~~~~~v~~~~~s~~g~~l~s~~~d~~~~~wd~ 496 (616)
+++..+......+++..|.|..+++|+-|. +.||..-|..+.|+|.|..|++++.|++||+||+
T Consensus 428 RTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~i 507 (893)
T KOG0291|consen 428 RTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDI 507 (893)
T ss_pred eeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEe
Confidence 999887777889999999999888888773 3455555555779999999999999999999998
Q ss_pred cC--------------CceeeCCCCCCccc
Q 048012 497 EV--------------APVIHNPHALPLFR 512 (616)
Q Consensus 497 ~~--------------~~~~~~p~~~~l~~ 512 (616)
-. ..+.|.|++..+..
T Consensus 508 f~s~~~vEtl~i~sdvl~vsfrPdG~elaV 537 (893)
T KOG0291|consen 508 FSSSGTVETLEIRSDVLAVSFRPDGKELAV 537 (893)
T ss_pred eccCceeeeEeeccceeEEEEcCCCCeEEE
Confidence 32 23678888876654
No 22
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=8.2e-35 Score=280.74 Aligned_cols=300 Identities=22% Similarity=0.330 Sum_probs=244.2
Q ss_pred CCCCcceEEecCCcccEEEEEECC-CCCEEEEEEcCCcEEEEeCCCCccccccceecCCCCCCceEEEEecCCCCeEEEE
Q 048012 136 QIPMSNEIVLKGHTKIVSALAVDH-SGSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSDRFLCV 214 (616)
Q Consensus 136 ~~p~~~~~~l~~H~~~V~~v~~sp-~g~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~ 214 (616)
.+|-+....+.||+..|+++.|.| .+.+|++|+.|+.|+||++-.....++.+ .+|..+|..++|+.+|..|+++
T Consensus 201 ~~Pkk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf----~gH~k~Vrd~~~s~~g~~fLS~ 276 (503)
T KOG0282|consen 201 YLPKKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTF----KGHRKPVRDASFNNCGTSFLSA 276 (503)
T ss_pred eccHhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhh----hcchhhhhhhhccccCCeeeee
Confidence 457777889999999999999999 89999999999999999998744444433 3677889999999999999999
Q ss_pred eCCCeEEEEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEEEECCCccccceEEeeec
Q 048012 215 TGSAQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKPKL 294 (616)
Q Consensus 215 s~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~ 294 (616)
+.|+.+++||++++.+... ......++|+.|+|++.++|++|+.|+.|+.||+++++.+..+.
T Consensus 277 sfD~~lKlwDtETG~~~~~-------------f~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd---- 339 (503)
T KOG0282|consen 277 SFDRFLKLWDTETGQVLSR-------------FHLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYD---- 339 (503)
T ss_pred ecceeeeeeccccceEEEE-------------EecCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHH----
Confidence 9999999999998875332 11234578999999998999999999999999999987655543
Q ss_pred cCCCCccEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCCCCCceeeecCCCCCeEEEEEcCCCCeEEEEecCCcEEEEeC
Q 048012 295 ARPGRVAVTTCAWDCDGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHSDDITALKFSSDGRILLSRSFDGSLKVWDL 374 (616)
Q Consensus 295 ~~~~~~~v~~~~~sp~g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~v~lwd~ 374 (616)
.|-..|..+.|-++|+.+++.+.|++|+||+.+.+- ........+.-...+|..+|++.+++.=+.|+.|.||.+
T Consensus 340 --~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v---~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~ 414 (503)
T KOG0282|consen 340 --RHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPV---PIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFST 414 (503)
T ss_pred --hhhhheeeeEEccCCceEeeeccCccEEEEEcCCCc---cchhhcchhhccCcceecCCCCCeehhhccCceEEEEec
Confidence 233479999999999999999999999999998752 122222333345678999999999999999999999987
Q ss_pred CCCC--CcceEecCCCCCCcceeEEECCCCCEEEEeeccccccCCCceEEEEeCCCCceEEEEecCCCCCeEEEEEcCCC
Q 048012 375 RKMK--EPLKVFEDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREKLELVSRVGISPACSVVQCAWHPKL 452 (616)
Q Consensus 375 ~~~~--~~~~~~~~~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~ 452 (616)
...- ...+.+.+|...+.-..+.|||||++|++|. .+|.+.+||.++-+++..+.. |...++.+.|||..
T Consensus 415 ~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGd-------sdG~v~~wdwkt~kl~~~lka-h~~~ci~v~wHP~e 486 (503)
T KOG0282|consen 415 VPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGD-------SDGKVNFWDWKTTKLVSKLKA-HDQPCIGVDWHPVE 486 (503)
T ss_pred ccccccCHhhhhcceeccCceeeEEEcCCCCeEEeec-------CCccEEEeechhhhhhhcccc-CCcceEEEEecCCC
Confidence 5421 2344566666556678899999999999999 899999999999999999986 67899999999987
Q ss_pred CcEEEEeccCCCCceEEEec
Q 048012 453 NQIFATAGDKSQGGTHILYD 472 (616)
Q Consensus 453 ~~l~~~~~d~~~~~~~~v~~ 472 (616)
..-+++|+ .++.+.+|+
T Consensus 487 ~Skvat~~---w~G~Ikiwd 503 (503)
T KOG0282|consen 487 PSKVATCG---WDGLIKIWD 503 (503)
T ss_pred cceeEecc---cCceeEecC
Confidence 66555554 266777764
No 23
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=3.3e-33 Score=293.51 Aligned_cols=300 Identities=25% Similarity=0.434 Sum_probs=245.2
Q ss_pred eEEecCC-cccEEEEEECCCCCEEEEEEcCCcEEEEeCCCCccccccceecCCCCCCceEEEEecCCCCeEEEEeCCCeE
Q 048012 142 EIVLKGH-TKIVSALAVDHSGSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSDRFLCVTGSAQA 220 (616)
Q Consensus 142 ~~~l~~H-~~~V~~v~~sp~g~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~s~d~~v 220 (616)
+..+.+| ...|.|+.|+++|++|++++.|+.+++|+...... ........|...|.+++|+|++.++++++.|++|
T Consensus 151 ~~~~~~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~---~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~ti 227 (456)
T KOG0266|consen 151 EQTLAGHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKS---NLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTL 227 (456)
T ss_pred eeeecccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccc---hhhccccccccceeeeEECCCCcEEEEecCCceE
Confidence 5555554 89999999999999999999999999999965432 1222225677789999999999999999999999
Q ss_pred EEEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEEEECCCccccceEEeeeccCCCCc
Q 048012 221 KIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPGRV 300 (616)
Q Consensus 221 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~ 300 (616)
+|||+.... +.++.+++|...|++++|+|++ +++++|+.|++|||||++++++...+ .+|..
T Consensus 228 riwd~~~~~-----------~~~~~l~gH~~~v~~~~f~p~g-~~i~Sgs~D~tvriWd~~~~~~~~~l------~~hs~ 289 (456)
T KOG0266|consen 228 RIWDLKDDG-----------RNLKTLKGHSTYVTSVAFSPDG-NLLVSGSDDGTVRIWDVRTGECVRKL------KGHSD 289 (456)
T ss_pred EEeeccCCC-----------eEEEEecCCCCceEEEEecCCC-CEEEEecCCCcEEEEeccCCeEEEee------eccCC
Confidence 999994321 1356678999999999999999 89999999999999999986655544 35566
Q ss_pred cEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCCCCCceeeecCCCCC--eEEEEEcCCCCeEEEEecCCcEEEEeCCCCC
Q 048012 301 AVTTCAWDCDGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHSDD--ITALKFSSDGRILLSRSFDGSLKVWDLRKMK 378 (616)
Q Consensus 301 ~v~~~~~sp~g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~h~~~--V~~l~~spdg~~l~s~s~Dg~v~lwd~~~~~ 378 (616)
.|++++|++++++|++++.||.|+|||+.++. ..+...+..+... ++++.|+|++.+|++++.|+.+++||++...
T Consensus 290 ~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~--~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~ 367 (456)
T KOG0266|consen 290 GISGLAFSPDGNLLVSASYDGTIRVWDLETGS--KLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGK 367 (456)
T ss_pred ceEEEEECCCCCEEEEcCCCccEEEEECCCCc--eeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCc
Confidence 89999999999999999999999999999872 1134555555554 9999999999999999999999999999754
Q ss_pred CcceEecCCCCC-CcceeEEECCCCCEEEEeeccccccCCCceEEEEeCCCCceEEEEecCCCCCeEEEEEcCCCCcEEE
Q 048012 379 EPLKVFEDLPNN-YAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREKLELVSRVGISPACSVVQCAWHPKLNQIFA 457 (616)
Q Consensus 379 ~~~~~~~~~~~~-~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~ 457 (616)
. ...+..+... ..+.+..+++.++++++|+ .|+.|++||+.++..+..+..+....+..+.|||..+.+++
T Consensus 368 ~-~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~-------~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~~~~~~~~s 439 (456)
T KOG0266|consen 368 S-VGTYTGHSNLVRCIFSPTLSTGGKLIYSGS-------EDGSVYVWDSSSGGILQRLEGHSKAAVSDLSSHPTENLIAS 439 (456)
T ss_pred c-eeeecccCCcceeEecccccCCCCeEEEEe-------CCceEEEEeCCccchhhhhcCCCCCceeccccCCCcCeeee
Confidence 3 4455555443 2455566688999999999 99999999999999888887632678999999999999998
Q ss_pred EeccCCCCceEEEeccc
Q 048012 458 TAGDKSQGGTHILYDPR 474 (616)
Q Consensus 458 ~~~d~~~~~~~~v~~~~ 474 (616)
.+.+. ++.+++|...
T Consensus 440 ~s~~~--d~~~~~w~~~ 454 (456)
T KOG0266|consen 440 SSFEG--DGLIRLWKYD 454 (456)
T ss_pred cCcCC--CceEEEecCC
Confidence 88532 7778888654
No 24
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=9.1e-34 Score=264.27 Aligned_cols=289 Identities=20% Similarity=0.298 Sum_probs=248.8
Q ss_pred eEEecCCcccEEEEEECCCCCEEEEEEcCCcEEEEeCCCCccccccceecCCCCCCceEEEEecCCCCeEEEEeCCCeEE
Q 048012 142 EIVLKGHTKIVSALAVDHSGSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSDRFLCVTGSAQAK 221 (616)
Q Consensus 142 ~~~l~~H~~~V~~v~~sp~g~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~s~d~~v~ 221 (616)
...+.+|..+|+.+-|+|+-.++++++.|++|++||+.++. +.....+|...|..|+|+..|++|++++.|-.++
T Consensus 101 ~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~-----~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~ 175 (406)
T KOG0295|consen 101 VQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGE-----LERSLRGHTDSVFDISFDASGKYLATCSSDLSAK 175 (406)
T ss_pred hhhhhccccceeeeeeccCceEEEEecCCceEEEEEccchh-----hhhhhhccccceeEEEEecCccEEEecCCccchh
Confidence 44678999999999999999999999999999999998863 2344456777899999999999999999999999
Q ss_pred EEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEEEECCCccccceEEeeeccCCCCcc
Q 048012 222 IYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPGRVA 301 (616)
Q Consensus 222 vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~ 301 (616)
+||.+... +.++.+.+|...|.++.|-|.+ .+|++++.|.+|+.|++.++-+.+.+. +|...
T Consensus 176 LWd~~~~~-----------~c~ks~~gh~h~vS~V~f~P~g-d~ilS~srD~tik~We~~tg~cv~t~~------~h~ew 237 (406)
T KOG0295|consen 176 LWDFDTFF-----------RCIKSLIGHEHGVSSVFFLPLG-DHILSCSRDNTIKAWECDTGYCVKTFP------GHSEW 237 (406)
T ss_pred heeHHHHH-----------HHHHHhcCcccceeeEEEEecC-CeeeecccccceeEEecccceeEEecc------CchHh
Confidence 99988642 3467789999999999999987 799999999999999999988877664 45558
Q ss_pred EEEEEECCCCCeEEEEeCCCcEEEEeCCCCCCCCCceeeecCCCCCeEEEEEcCC---------------CCeEEEEecC
Q 048012 302 VTTCAWDCDGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHSDDITALKFSSD---------------GRILLSRSFD 366 (616)
Q Consensus 302 v~~~~~sp~g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~spd---------------g~~l~s~s~D 366 (616)
|..+..+.||.++++++.|.+|++|-+.+. .+...+..|.-+|-+++|.|. +.++++++.|
T Consensus 238 vr~v~v~~DGti~As~s~dqtl~vW~~~t~----~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrD 313 (406)
T KOG0295|consen 238 VRMVRVNQDGTIIASCSNDQTLRVWVVATK----QCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRD 313 (406)
T ss_pred EEEEEecCCeeEEEecCCCceEEEEEeccc----hhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeeccc
Confidence 999999999999999999999999999865 567788999999999999762 3599999999
Q ss_pred CcEEEEeCCCCCCcceEecCCCCCCcceeEEECCCCCEEEEeeccccccCCCceEEEEeCCCCceEEEEecCCCCCeEEE
Q 048012 367 GSLKVWDLRKMKEPLKVFEDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREKLELVSRVGISPACSVVQC 446 (616)
Q Consensus 367 g~v~lwd~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~ 446 (616)
++|++||+.++ .++.++.+ +..+|..++|+|.|+||+++. .|++|++||++++++...+. .|..-|+++
T Consensus 314 ktIk~wdv~tg-~cL~tL~g--hdnwVr~~af~p~Gkyi~Sca-------DDktlrvwdl~~~~cmk~~~-ah~hfvt~l 382 (406)
T KOG0295|consen 314 KTIKIWDVSTG-MCLFTLVG--HDNWVRGVAFSPGGKYILSCA-------DDKTLRVWDLKNLQCMKTLE-AHEHFVTSL 382 (406)
T ss_pred ceEEEEeccCC-eEEEEEec--ccceeeeeEEcCCCeEEEEEe-------cCCcEEEEEeccceeeeccC-CCcceeEEE
Confidence 99999999976 44555555 456699999999999999999 99999999999999999998 467779999
Q ss_pred EEcCCCCcEEEEeccCCCCceEEEec
Q 048012 447 AWHPKLNQIFATAGDKSQGGTHILYD 472 (616)
Q Consensus 447 ~~~p~~~~l~~~~~d~~~~~~~~v~~ 472 (616)
.||.+..++++|+- +....+|.
T Consensus 383 Dfh~~~p~VvTGsV----dqt~KvwE 404 (406)
T KOG0295|consen 383 DFHKTAPYVVTGSV----DQTVKVWE 404 (406)
T ss_pred ecCCCCceEEeccc----cceeeeee
Confidence 99988777776665 56666664
No 25
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=3.2e-32 Score=264.97 Aligned_cols=323 Identities=22% Similarity=0.321 Sum_probs=256.0
Q ss_pred EecCCcccEEEEEECCCCC-EEEEEEcCCcEEEEeCCCCccccccceecCCCCCCceEEEEecCCCCeEEEEeCCCeEEE
Q 048012 144 VLKGHTKIVSALAVDHSGS-RVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSDRFLCVTGSAQAKI 222 (616)
Q Consensus 144 ~l~~H~~~V~~v~~sp~g~-~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~s~d~~v~v 222 (616)
.+.||...|+++.|-|... +++||+.|++|.+|.=.. -.|+.....|..-|+|+.|+|||.++++++.|+++.|
T Consensus 142 ei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPP-----FKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~i 216 (603)
T KOG0318|consen 142 EITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPP-----FKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYI 216 (603)
T ss_pred eeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCC-----eeeeecccccccceeeEEECCCCCeEEEecCCccEEE
Confidence 4679999999999998765 899999999999997332 2344445556678999999999999999999999999
Q ss_pred EECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEEEECCCccccceEEeeeccCCCCccE
Q 048012 223 YDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPGRVAV 302 (616)
Q Consensus 223 wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v 302 (616)
||=.+++.... +..-.+|.+.|.++.|+||+ ..|+|++.|.+++|||+.+.+....+..... -.. ..
T Consensus 217 yDGktge~vg~---------l~~~~aHkGsIfalsWsPDs-~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~--v~d-qq 283 (603)
T KOG0318|consen 217 YDGKTGEKVGE---------LEDSDAHKGSIFALSWSPDS-TQFLTVSADKTIKIWDVSTNSLVSTWPMGST--VED-QQ 283 (603)
T ss_pred EcCCCccEEEE---------ecCCCCccccEEEEEECCCC-ceEEEecCCceEEEEEeeccceEEEeecCCc--hhc-eE
Confidence 99765553222 22246899999999999988 5899999999999999998876666544332 111 33
Q ss_pred EEEEECCCCCeEEEEeCCCcEEEEeCCCCCCCCCceeeecCCCCCeEEEEEcCCCCeEEEEecCCcEEEEeCCCCCCcc-
Q 048012 303 TTCAWDCDGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHSDDITALKFSSDGRILLSRSFDGSLKVWDLRKMKEPL- 381 (616)
Q Consensus 303 ~~~~~sp~g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~v~lwd~~~~~~~~- 381 (616)
..|.|- ...|++.+.+|+|.+++...+ .....+.+|...|++++.++++.+|++|+.||.|.-||+.++....
T Consensus 284 vG~lWq--kd~lItVSl~G~in~ln~~d~----~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~ 357 (603)
T KOG0318|consen 284 VGCLWQ--KDHLITVSLSGTINYLNPSDP----SVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRL 357 (603)
T ss_pred EEEEEe--CCeEEEEEcCcEEEEecccCC----ChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCcccccc
Confidence 445565 567888899999999999876 4788899999999999999999999999999999999986432110
Q ss_pred -----------------------------eEe------------------------------------------cC----
Q 048012 382 -----------------------------KVF------------------------------------------ED---- 386 (616)
Q Consensus 382 -----------------------------~~~------------------------------------------~~---- 386 (616)
+.+ ..
T Consensus 358 ~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~ 437 (603)
T KOG0318|consen 358 AGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKV 437 (603)
T ss_pred ccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcc
Confidence 000 00
Q ss_pred --CCCCCcceeEEECCCCCEEEEeeccccccCCCceEEEEeCCCCceEEE-EecCCCCCeEEEEEcCCCCcEEEEeccC-
Q 048012 387 --LPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREKLELVSR-VGISPACSVVQCAWHPKLNQIFATAGDK- 462 (616)
Q Consensus 387 --~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~~~~~~~-~~~~~~~~v~~~~~~p~~~~l~~~~~d~- 462 (616)
.+-.+...+++++|++..+++|+ .||.|+||.+...++... ....|.+.|++++++|++.+|+++...+
T Consensus 438 ~~~~~~y~~s~vAv~~~~~~vaVGG-------~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rk 510 (603)
T KOG0318|consen 438 SSIPIGYESSAVAVSPDGSEVAVGG-------QDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRK 510 (603)
T ss_pred eeeccccccceEEEcCCCCEEEEec-------ccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEeccCCc
Confidence 00134467789999999999999 999999999988765443 3446789999999999999999988754
Q ss_pred ---------------CCCceEEEecccCCCCCcEEEEecCCcceeccccc
Q 048012 463 ---------------SQGGTHILYDPRLSERGALVCVARAPRKKSVDDFE 497 (616)
Q Consensus 463 ---------------~~~~~~~v~~~~~s~~g~~l~s~~~d~~~~~wd~~ 497 (616)
..-|+.+|-.++|||+..+||+++.|..|.||++.
T Consensus 511 vv~yd~~s~~~~~~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~ 560 (603)
T KOG0318|consen 511 VVLYDVASREVKTNRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIYSVK 560 (603)
T ss_pred EEEEEcccCceecceeeeeeeeEEEEEeCCCceEEEeccccceEEEEEcc
Confidence 01255566668899999999999999999999985
No 26
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=1.2e-33 Score=288.60 Aligned_cols=208 Identities=28% Similarity=0.477 Sum_probs=188.6
Q ss_pred eEEecCCcccEEEEEECCCCCEEEEEEcCCcEEEEeCCCCccccccceecCCCCCCceEEEEecCCCCeEEEEeCCCeEE
Q 048012 142 EIVLKGHTKIVSALAVDHSGSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSDRFLCVTGSAQAK 221 (616)
Q Consensus 142 ~~~l~~H~~~V~~v~~sp~g~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~s~d~~v~ 221 (616)
..+|.||+++|..+.|+|+.++|++||.|++||+|.+.+. .......+|..+|+.+.|+|.|-++++++.|++.+
T Consensus 444 ~~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~-----s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tAr 518 (707)
T KOG0263|consen 444 SRTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTW-----SCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTAR 518 (707)
T ss_pred eEEeecCCCceeeeeecccccceeeccCCcceeeeecccc-----eeEEEecCCCcceeeEEecCCceEEEecCCCceee
Confidence 3468999999999999999999999999999999999864 23334458899999999999999999999999999
Q ss_pred EEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEEEECCCccccceEEeeeccCCCCcc
Q 048012 222 IYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPGRVA 301 (616)
Q Consensus 222 vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~ 301 (616)
+|..+.. .+++.+.+|.+.|.|+.|||+. +++++||.|.+||+||+.++.....+ .+|..+
T Consensus 519 LWs~d~~------------~PlRifaghlsDV~cv~FHPNs-~Y~aTGSsD~tVRlWDv~~G~~VRiF------~GH~~~ 579 (707)
T KOG0263|consen 519 LWSTDHN------------KPLRIFAGHLSDVDCVSFHPNS-NYVATGSSDRTVRLWDVSTGNSVRIF------TGHKGP 579 (707)
T ss_pred eeecccC------------CchhhhcccccccceEEECCcc-cccccCCCCceEEEEEcCCCcEEEEe------cCCCCc
Confidence 9998754 3577789999999999999976 79999999999999999998776555 468889
Q ss_pred EEEEEECCCCCeEEEEeCCCcEEEEeCCCCCCCCCceeeecCCCCCeEEEEEcCCCCeEEEEecCCcEEEEeCCCC
Q 048012 302 VTTCAWDCDGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHSDDITALKFSSDGRILLSRSFDGSLKVWDLRKM 377 (616)
Q Consensus 302 v~~~~~sp~g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~v~lwd~~~~ 377 (616)
|.+++|+|+|++|++|+.||.|.|||+.++ ..+..+.+|.+.|.+|.|+.+|..||+++.|.+|++||+...
T Consensus 580 V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~----~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~ 651 (707)
T KOG0263|consen 580 VTALAFSPCGRYLASGDEDGLIKIWDLANG----SLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKV 651 (707)
T ss_pred eEEEEEcCCCceEeecccCCcEEEEEcCCC----cchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchhh
Confidence 999999999999999999999999999987 688899999999999999999999999999999999999764
No 27
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=3e-33 Score=282.41 Aligned_cols=335 Identities=17% Similarity=0.244 Sum_probs=261.0
Q ss_pred ecC-CcccEEEEEECCCCCEEEEEEcCCcEEEEeCCCCccccccceecCCCCCCceEEEEecCCCCe--EEEEeCCCeEE
Q 048012 145 LKG-HTKIVSALAVDHSGSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSDR--FLCVTGSAQAK 221 (616)
Q Consensus 145 l~~-H~~~V~~v~~sp~g~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~--l~~~s~d~~v~ 221 (616)
++. |+.+|.-++|+|.|.+|++|+.|+.|+|||+... .......+|++.|.++.|+|+-.+ |+++..|+.++
T Consensus 100 wKa~He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~-----~~th~fkG~gGvVssl~F~~~~~~~lL~sg~~D~~v~ 174 (775)
T KOG0319|consen 100 WKAIHEAPVITMAFDPTGTLLATGGADGRVKVWDIKNG-----YCTHSFKGHGGVVSSLLFHPHWNRWLLASGATDGTVR 174 (775)
T ss_pred HhhccCCCeEEEEEcCCCceEEeccccceEEEEEeeCC-----EEEEEecCCCceEEEEEeCCccchhheeecCCCceEE
Confidence 445 9999999999999999999999999999999875 334455678899999999998665 77888899999
Q ss_pred EEECCCCee-----------------------------------eeE---------------------ee---C-cee--
Q 048012 222 IYDRDGLTL-----------------------------------GEF---------------------VK---G-DMY-- 239 (616)
Q Consensus 222 vwd~~~~~~-----------------------------------~~~---------------------~~---~-~~~-- 239 (616)
+||+..... +.+ .. + ..+
T Consensus 175 vwnl~~~~tcl~~~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~~ 254 (775)
T KOG0319|consen 175 VWNLNDKRTCLHTMILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQYKKLKTLPLYESLESVVRLREELGGKGEYII 254 (775)
T ss_pred EEEcccCchHHHHHHhhhhheeeeeeccCCceEEEeccCcEEEEeehhhhhhhheechhhheeeEEEechhcCCcceEEE
Confidence 999873221 000 00 0 000
Q ss_pred -----------------------------------------------------------------------Eee------
Q 048012 240 -----------------------------------------------------------------------IRD------ 242 (616)
Q Consensus 240 -----------------------------------------------------------------------~~~------ 242 (616)
+.+
T Consensus 255 TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~ 334 (775)
T KOG0319|consen 255 TAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGP 334 (775)
T ss_pred EecCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhheeeeecCC
Confidence 000
Q ss_pred -----------------------cccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEEEECCCccccceEEeeeccCCCC
Q 048012 243 -----------------------LKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPGR 299 (616)
Q Consensus 243 -----------------------~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~ 299 (616)
...+.||...|.++....+| .+|+||+.|.++++|.+++....... .....+|.
T Consensus 335 e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g-~llat~sKD~svilWr~~~~~~~~~~--~a~~~gH~ 411 (775)
T KOG0319|consen 335 EESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSG-DLLATGSKDKSVILWRLNNNCSKSLC--VAQANGHT 411 (775)
T ss_pred ccceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeecccC-cEEEEecCCceEEEEEecCCcchhhh--hhhhcccc
Confidence 00123666667777633334 58889999999999988543322222 22234666
Q ss_pred ccEEEEEECCCC-CeEEEEeCCCcEEEEeCCCCCCCC-Cce----eeecCCCCCeEEEEEcCCCCeEEEEecCCcEEEEe
Q 048012 300 VAVTTCAWDCDG-KCIAGGIGDGSIQVWNLKPGWGSR-PDI----HVEKGHSDDITALKFSSDGRILLSRSFDGSLKVWD 373 (616)
Q Consensus 300 ~~v~~~~~sp~g-~~l~~g~~dg~I~iwd~~~~~~~~-~~~----~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~v~lwd 373 (616)
..|.+++++..+ .+|++++.|++|++|++....... +.. ....+|...|+||+++|+..+|+|||.|.+.+||+
T Consensus 412 ~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~ 491 (775)
T KOG0319|consen 412 NSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWD 491 (775)
T ss_pred cccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeec
Confidence 689999997654 479999999999999998621111 122 24568999999999999999999999999999999
Q ss_pred CCCCCCcceEecCCCCCCcceeEEECCCCCEEEEeeccccccCCCceEEEEeCCCCceEEEEecCCCCCeEEEEEcCCCC
Q 048012 374 LRKMKEPLKVFEDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREKLELVSRVGISPACSVVQCAWHPKLN 453 (616)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~ 453 (616)
+.. .....++.+|..+ |.+|.|++..+.|++++ .|++|+||.+.++.++.++.. |.+.|..+.|-.++.
T Consensus 492 le~-~~l~~vLsGH~RG--vw~V~Fs~~dq~laT~S-------gD~TvKIW~is~fSClkT~eG-H~~aVlra~F~~~~~ 560 (775)
T KOG0319|consen 492 LEQ-LRLLGVLSGHTRG--VWCVSFSKNDQLLATCS-------GDKTVKIWSISTFSCLKTFEG-HTSAVLRASFIRNGK 560 (775)
T ss_pred ccC-ceEEEEeeCCccc--eEEEEeccccceeEecc-------CCceEEEEEeccceeeeeecC-ccceeEeeeeeeCCc
Confidence 994 4556777776655 99999999999999999 899999999999999999975 788999999999999
Q ss_pred cEEEEeccC---------------CCCceEEEecccCCCCCcEEEEecCCcceecccccC
Q 048012 454 QIFATAGDK---------------SQGGTHILYDPRLSERGALVCVARAPRKKSVDDFEV 498 (616)
Q Consensus 454 ~l~~~~~d~---------------~~~~~~~v~~~~~s~~g~~l~s~~~d~~~~~wd~~~ 498 (616)
+|+++++|+ +..|.-+||.++.++++.++++++.|+.+.+|.-.+
T Consensus 561 qliS~~adGliKlWnikt~eC~~tlD~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wkD~T 620 (775)
T KOG0319|consen 561 QLISAGADGLIKLWNIKTNECEMTLDAHNDRVWALSVSPLLDMFVTGGGDGRIIFWKDVT 620 (775)
T ss_pred EEEeccCCCcEEEEeccchhhhhhhhhccceeEEEeecCccceeEecCCCeEEEEeecCc
Confidence 999999988 357888889999999999999999999999997643
No 28
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=3.3e-32 Score=307.17 Aligned_cols=305 Identities=16% Similarity=0.286 Sum_probs=227.2
Q ss_pred ecCCcccEEEEEECCCCCEEEEEEcCCcEEEEeCCCCccccc--cceecCCCCCCceEEEEecCC-CCeEEEEeCCCeEE
Q 048012 145 LKGHTKIVSALAVDHSGSRVLSGSYDYTVRMYDFQGMNSRLQ--SFRQLEPSEGHQVRNLSWSPT-SDRFLCVTGSAQAK 221 (616)
Q Consensus 145 l~~H~~~V~~v~~sp~g~~lasgs~Dg~i~iwd~~~~~~~~~--~~~~~~~~~~~~v~~l~~sp~-g~~l~~~s~d~~v~ 221 (616)
+..|...|++++|+|+|++||+|+.|+.|+||++........ ........+...|.+++|++. +.+|++++.|+.|+
T Consensus 479 ~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~las~~~Dg~v~ 558 (793)
T PLN00181 479 LLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELASRSKLSGICWNSYIKSQVASSNFEGVVQ 558 (793)
T ss_pred ccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEecccCceeeEEeccCCCCEEEEEeCCCeEE
Confidence 446999999999999999999999999999999864211000 000111123456899999874 78899999999999
Q ss_pred EEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEEEECCCccccceEEeeeccCCCCcc
Q 048012 222 IYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPGRVA 301 (616)
Q Consensus 222 vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~ 301 (616)
|||+.+... +..+.+|...|++++|+|.+..+|++|+.|++|++||+.++.....+. +...
T Consensus 559 lWd~~~~~~------------~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~-------~~~~ 619 (793)
T PLN00181 559 VWDVARSQL------------VTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIK-------TKAN 619 (793)
T ss_pred EEECCCCeE------------EEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEe-------cCCC
Confidence 999986643 334578999999999998555799999999999999998765544332 1126
Q ss_pred EEEEEEC-CCCCeEEEEeCCCcEEEEeCCCCCCCCCceeeecCCCCCeEEEEEcCCCCeEEEEecCCcEEEEeCCCC---
Q 048012 302 VTTCAWD-CDGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHSDDITALKFSSDGRILLSRSFDGSLKVWDLRKM--- 377 (616)
Q Consensus 302 v~~~~~s-p~g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~v~lwd~~~~--- 377 (616)
|.++.|+ ++|.+|++|+.||.|++||++.. ...+..+.+|...|+++.|. ++.+|++++.|++|+|||++..
T Consensus 620 v~~v~~~~~~g~~latgs~dg~I~iwD~~~~---~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~ 695 (793)
T PLN00181 620 ICCVQFPSESGRSLAFGSADHKVYYYDLRNP---KLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISG 695 (793)
T ss_pred eEEEEEeCCCCCEEEEEeCCCeEEEEECCCC---CccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccc
Confidence 8899995 57999999999999999999864 13456678999999999997 7889999999999999999753
Q ss_pred --CCcceEecCCCCCCcceeEEECCCCCEEEEeeccccccCCCceEEEEeCCCCceEEEEecCCCCCeEEEEEcCCCCcE
Q 048012 378 --KEPLKVFEDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREKLELVSRVGISPACSVVQCAWHPKLNQI 455 (616)
Q Consensus 378 --~~~~~~~~~~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l 455 (616)
..++..+..+ ...+.+++|++++.+|++|+ .|+.|+||+......+..+.......+..+..
T Consensus 696 ~~~~~l~~~~gh--~~~i~~v~~s~~~~~lasgs-------~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~------- 759 (793)
T PLN00181 696 INETPLHSFMGH--TNVKNFVGLSVSDGYIATGS-------ETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEV------- 759 (793)
T ss_pred cCCcceEEEcCC--CCCeeEEEEcCCCCEEEEEe-------CCCEEEEEECCCCCceEEEecccCCccccccc-------
Confidence 2345556554 34588999999999999999 89999999987765554443222111111000
Q ss_pred EEEeccCCCCceEEEecccCCCCCcEEEEecCCcceecccc
Q 048012 456 FATAGDKSQGGTHILYDPRLSERGALVCVARAPRKKSVDDF 496 (616)
Q Consensus 456 ~~~~~d~~~~~~~~v~~~~~s~~g~~l~s~~~d~~~~~wd~ 496 (616)
. ++...|.++.|+++|.+|++++.++.|+||++
T Consensus 760 ----~----~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 760 ----D----DASQFISSVCWRGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred ----C----CCCcEEEEEEEcCCCCeEEEecCCCcEEEEec
Confidence 0 22345566666677777777777777777765
No 29
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=2.7e-32 Score=242.04 Aligned_cols=273 Identities=18% Similarity=0.260 Sum_probs=221.7
Q ss_pred eEEecCCcccEEEEEECCCCCEEEEEEcCCcEEEEeCCCCccccccceecCCCCCCceEEEEecCCCCeEEEEeCCCeEE
Q 048012 142 EIVLKGHTKIVSALAVDHSGSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSDRFLCVTGSAQAK 221 (616)
Q Consensus 142 ~~~l~~H~~~V~~v~~sp~g~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~s~d~~v~ 221 (616)
..++....+.|+.+.+.|+++.||+++. -.||+||+++.+.. .. .....|...|.++.|..+|+.+++++.||+++
T Consensus 33 ~rTiqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np~--Pv-~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~k 108 (311)
T KOG0315|consen 33 SRTIQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNPN--PV-ATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVK 108 (311)
T ss_pred EEEEecCccceeeEEEcCCcchhhhccC-CeeEEEEccCCCCC--ce-eEEeccCCceEEEEEeecCeEEEecCCCceEE
Confidence 4466677889999999999999999885 57999999986542 12 22235667799999999999999999999999
Q ss_pred EEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEEEECCCccccceEEeeeccCCCCcc
Q 048012 222 IYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPGRVA 301 (616)
Q Consensus 222 vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~ 301 (616)
|||+..... .....|.+.|+++..||+. ..|++|..+|.|++||+....+...++.. ....
T Consensus 109 IWdlR~~~~-------------qR~~~~~spVn~vvlhpnQ-teLis~dqsg~irvWDl~~~~c~~~liPe-----~~~~ 169 (311)
T KOG0315|consen 109 IWDLRSLSC-------------QRNYQHNSPVNTVVLHPNQ-TELISGDQSGNIRVWDLGENSCTHELIPE-----DDTS 169 (311)
T ss_pred EEeccCccc-------------chhccCCCCcceEEecCCc-ceEEeecCCCcEEEEEccCCccccccCCC-----CCcc
Confidence 999987442 2345677999999999976 58999999999999999886555554432 2248
Q ss_pred EEEEEECCCCCeEEEEeCCCcEEEEeCCCCCC--CCCceeeecCCCCCeEEEEEcCCCCeEEEEecCCcEEEEeCCCCCC
Q 048012 302 VTTCAWDCDGKCIAGGIGDGSIQVWNLKPGWG--SRPDIHVEKGHSDDITALKFSSDGRILLSRSFDGSLKVWDLRKMKE 379 (616)
Q Consensus 302 v~~~~~sp~g~~l~~g~~dg~I~iwd~~~~~~--~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~v~lwd~~~~~~ 379 (616)
|.++...|+|.+|+++...|.+++|++-.... ...++..+++|.+.|..+.+|||+++|+++|.|.+++||++...-.
T Consensus 170 i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~k 249 (311)
T KOG0315|consen 170 IQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFK 249 (311)
T ss_pred eeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCcee
Confidence 99999999999999999999999999876421 2345567889999999999999999999999999999999987622
Q ss_pred cceEecCCCCCCcceeEEECCCCCEEEEeeccccccCCCceEEEEeCCCCceEEEEecCCCCCeEEEE
Q 048012 380 PLKVFEDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREKLELVSRVGISPACSVVQCA 447 (616)
Q Consensus 380 ~~~~~~~~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~ 447 (616)
.-..+.. +..++..++||.||+||++|+ .|+.+++|++..++.++.....+. ...+++
T Consensus 250 le~~l~g--h~rWvWdc~FS~dg~YlvTas-------sd~~~rlW~~~~~k~v~qy~gh~K-~~vc~~ 307 (311)
T KOG0315|consen 250 LELVLTG--HQRWVWDCAFSADGEYLVTAS-------SDHTARLWDLSAGKEVRQYQGHHK-AAVCVA 307 (311)
T ss_pred eEEEeec--CCceEEeeeeccCccEEEecC-------CCCceeecccccCceeeecCCccc-ccEEEE
Confidence 2233333 446799999999999999999 899999999999999999876444 344444
No 30
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=5.9e-33 Score=262.37 Aligned_cols=305 Identities=21% Similarity=0.301 Sum_probs=247.6
Q ss_pred ccCCCCCcceEEecCCcccEEEEEECCCCCEEEEEEcCCcEEEEeCCCCccccccceecCCCCCCceEEEEecCCCCeEE
Q 048012 133 NRHQIPMSNEIVLKGHTKIVSALAVDHSGSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSDRFL 212 (616)
Q Consensus 133 ~~~~~p~~~~~~l~~H~~~V~~v~~sp~g~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~ 212 (616)
.+..+|...-.+|..|+..|.-+.||++|++|||++.|.+..+|.+..... -.+.....+|..+|..+.||||.++|+
T Consensus 208 ~~~qip~qt~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~--~kl~~tlvgh~~~V~yi~wSPDdryLl 285 (519)
T KOG0293|consen 208 GRLQIPSQTWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVH--FKLKKTLVGHSQPVSYIMWSPDDRYLL 285 (519)
T ss_pred CcccCCchhhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcc--eeeeeeeecccCceEEEEECCCCCeEE
Confidence 355788888889999999999999999999999999999999999865332 223334456778899999999999999
Q ss_pred EEeCCCeEEEEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEEEECCCccccceEEee
Q 048012 213 CVTGSAQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKP 292 (616)
Q Consensus 213 ~~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~ 292 (616)
+++.+..+++||+.++.+... .-.+|...+.+++|.||+. .+++|+.|+++..||+.... .......
T Consensus 286 aCg~~e~~~lwDv~tgd~~~~-----------y~~~~~~S~~sc~W~pDg~-~~V~Gs~dr~i~~wdlDgn~-~~~W~gv 352 (519)
T KOG0293|consen 286 ACGFDEVLSLWDVDTGDLRHL-----------YPSGLGFSVSSCAWCPDGF-RFVTGSPDRTIIMWDLDGNI-LGNWEGV 352 (519)
T ss_pred ecCchHheeeccCCcchhhhh-----------cccCcCCCcceeEEccCCc-eeEecCCCCcEEEecCCcch-hhccccc
Confidence 999999999999998764221 1234568899999999984 79999999999999997532 1111111
Q ss_pred eccCCCCccEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCCCCCceeeecCCCCCeEEEEEcCCCCeEEEEecCCcEEEE
Q 048012 293 KLARPGRVAVTTCAWDCDGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHSDDITALKFSSDGRILLSRSFDGSLKVW 372 (616)
Q Consensus 293 ~~~~~~~~~v~~~~~sp~g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~v~lw 372 (616)
. ...|.+++..+||+++++.+.|..|++|+.... .... +.....+|+++..|.|++++++--.+..+++|
T Consensus 353 r-----~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~----~dr~-lise~~~its~~iS~d~k~~LvnL~~qei~LW 422 (519)
T KOG0293|consen 353 R-----DPKVHDLAITYDGKYVLLVTVDKKIRLYNREAR----VDRG-LISEEQPITSFSISKDGKLALVNLQDQEIHLW 422 (519)
T ss_pred c-----cceeEEEEEcCCCcEEEEEecccceeeechhhh----hhhc-cccccCceeEEEEcCCCcEEEEEcccCeeEEe
Confidence 1 126899999999999999999999999998753 2222 33344679999999999999999999999999
Q ss_pred eCCCCCCcceEecCCCCCCcceeEEECC-CCCEEEEeeccccccCCCceEEEEeCCCCceEEEEecCCCCCeEEEEEcCC
Q 048012 373 DLRKMKEPLKVFEDLPNNYAQTNVAFSP-DEQLFLTGTSVERESTTGGLLCFYDREKLELVSRVGISPACSVVQCAWHPK 451 (616)
Q Consensus 373 d~~~~~~~~~~~~~~~~~~~v~~v~fsp-dg~~l~~gs~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~ 451 (616)
|+... ..++.+.++.....+..-||-- +..++++|+ .|+.|+||+..+++++..+.. |...|++++|+|.
T Consensus 423 Dl~e~-~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGS-------ED~kvyIWhr~sgkll~~LsG-Hs~~vNcVswNP~ 493 (519)
T KOG0293|consen 423 DLEEN-KLVRKYFGHKQGHFIIRSCFGGGNDKFIASGS-------EDSKVYIWHRISGKLLAVLSG-HSKTVNCVSWNPA 493 (519)
T ss_pred ecchh-hHHHHhhcccccceEEEeccCCCCcceEEecC-------CCceEEEEEccCCceeEeecC-CcceeeEEecCCC
Confidence 99954 4455566666555566667765 558999999 999999999999999999975 6788999999999
Q ss_pred CCcEEEEeccCCCCceEEEeccc
Q 048012 452 LNQIFATAGDKSQGGTHILYDPR 474 (616)
Q Consensus 452 ~~~l~~~~~d~~~~~~~~v~~~~ 474 (616)
...++++++| +++++||.+.
T Consensus 494 ~p~m~ASasD---DgtIRIWg~~ 513 (519)
T KOG0293|consen 494 DPEMFASASD---DGTIRIWGPS 513 (519)
T ss_pred CHHHhhccCC---CCeEEEecCC
Confidence 9999998887 9999999886
No 31
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=4e-34 Score=270.21 Aligned_cols=269 Identities=17% Similarity=0.306 Sum_probs=226.0
Q ss_pred CCCceEEEEecCCCCeEEEEeCCCeEEEEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCC
Q 048012 195 EGHQVRNLSWSPTSDRFLCVTGSAQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGS 274 (616)
Q Consensus 195 ~~~~v~~l~~sp~g~~l~~~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~ 274 (616)
..++|..|.|.|+|++|++|+..|.+.+|+...... -..+..|...|.++.|++++ .++++|+.+|.
T Consensus 95 vkc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnF------------EtilQaHDs~Vr~m~ws~~g-~wmiSgD~gG~ 161 (464)
T KOG0284|consen 95 VKCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNF------------ETILQAHDSPVRTMKWSHNG-TWMISGDKGGM 161 (464)
T ss_pred cccceeeEEEcCCCceeEeecccccEEEecCceeeH------------HHHhhhhcccceeEEEccCC-CEEEEcCCCce
Confidence 345699999999999999999999999999754332 22367899999999999987 69999999999
Q ss_pred EEEEECCCccccceEEeeeccCCCCccEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCCCCCceeeecCCCCCeEEEEEc
Q 048012 275 LRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWDCDGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHSDDITALKFS 354 (616)
Q Consensus 275 v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~s 354 (616)
|++|+.+.. .++.+.. .|...|++++|+|+...|++++.||+|+|||.... +....+.+|.-.|.+++|+
T Consensus 162 iKyWqpnmn-nVk~~~a-----hh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~----kee~vL~GHgwdVksvdWH 231 (464)
T KOG0284|consen 162 IKYWQPNMN-NVKIIQA-----HHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMP----KEERVLRGHGWDVKSVDWH 231 (464)
T ss_pred EEecccchh-hhHHhhH-----hhhhhhheeccCCCCceeEEecCCCeEEEEeccCC----chhheeccCCCCcceeccC
Confidence 999998642 2222221 22247999999999999999999999999999865 5566779999999999999
Q ss_pred CCCCeEEEEecCCcEEEEeCCCCCCcceEecCCCCCCcceeEEECCCCCEEEEeeccccccCCCceEEEEeCCCCceEEE
Q 048012 355 SDGRILLSRSFDGSLKVWDLRKMKEPLKVFEDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREKLELVSR 434 (616)
Q Consensus 355 pdg~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~~~~~~~ 434 (616)
|.-.+|+++|.|..|++||.+++. ++..+.. |...|..+.|++++.+|++++ .|..+++||+++.+.+.+
T Consensus 232 P~kgLiasgskDnlVKlWDprSg~-cl~tlh~--HKntVl~~~f~~n~N~Llt~s-------kD~~~kv~DiR~mkEl~~ 301 (464)
T KOG0284|consen 232 PTKGLIASGSKDNLVKLWDPRSGS-CLATLHG--HKNTVLAVKFNPNGNWLLTGS-------KDQSCKVFDIRTMKELFT 301 (464)
T ss_pred CccceeEEccCCceeEeecCCCcc-hhhhhhh--ccceEEEEEEcCCCCeeEEcc-------CCceEEEEehhHhHHHHH
Confidence 999999999999999999999854 4555544 445599999999999999999 999999999999988888
Q ss_pred EecCCCCCeEEEEEcCCCCcEEEE-eccC----------------CCCceEEEecccCCCCCcEEEEecCCcceeccccc
Q 048012 435 VGISPACSVVQCAWHPKLNQIFAT-AGDK----------------SQGGTHILYDPRLSERGALVCVARAPRKKSVDDFE 497 (616)
Q Consensus 435 ~~~~~~~~v~~~~~~p~~~~l~~~-~~d~----------------~~~~~~~v~~~~~s~~g~~l~s~~~d~~~~~wd~~ 497 (616)
+.. |...|+++.|||-..-|+++ +.|+ -..|...||++++.|=|..||+++.|+++++|.-.
T Consensus 302 ~r~-Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r~ 380 (464)
T KOG0284|consen 302 YRG-HKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWTRN 380 (464)
T ss_pred hhc-chhhheeeccccccccceeeccCCCceEEEeccccccccCCCcccccceeeeeccccceeEeecCCCcceeeeccC
Confidence 875 67789999999977666655 4454 24677789999999999999999999999999763
No 32
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.4e-32 Score=270.52 Aligned_cols=282 Identities=19% Similarity=0.305 Sum_probs=242.5
Q ss_pred EEecCCcccEEEEEECCCCCEEEEEEcCCcEEEEeCCCCccccccceecCCCCCCceEEEEecCCCCeEEEEeCCCeEEE
Q 048012 143 IVLKGHTKIVSALAVDHSGSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSDRFLCVTGSAQAKI 222 (616)
Q Consensus 143 ~~l~~H~~~V~~v~~sp~g~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~s~d~~v~v 222 (616)
..+..|+..|.+|.|+|....++++-+.|.|.|||.+++. ..+.+ ....-+|++..|-+.-+++++|+.|.+|+|
T Consensus 7 rk~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqt-mVksf----eV~~~PvRa~kfiaRknWiv~GsDD~~IrV 81 (794)
T KOG0276|consen 7 RKFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQT-MVKSF----EVSEVPVRAAKFIARKNWIVTGSDDMQIRV 81 (794)
T ss_pred hHhhccCCceeeeecCCCCceEEEeeecCeeEEEecccce-eeeee----eecccchhhheeeeccceEEEecCCceEEE
Confidence 3456699999999999999999999999999999998742 22222 234557999999999999999999999999
Q ss_pred EECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEEEECCCccccceEEeeeccCCCCccE
Q 048012 223 YDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPGRVAV 302 (616)
Q Consensus 223 wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v 302 (616)
|+.++.+. +..+..|..-|.|++.||.. .+++|+|.|-+|++||....-...+.. .+|...|
T Consensus 82 fnynt~ek------------V~~FeAH~DyIR~iavHPt~-P~vLtsSDDm~iKlW~we~~wa~~qtf-----eGH~HyV 143 (794)
T KOG0276|consen 82 FNYNTGEK------------VKTFEAHSDYIRSIAVHPTL-PYVLTSSDDMTIKLWDWENEWACEQTF-----EGHEHYV 143 (794)
T ss_pred Eeccccee------------eEEeeccccceeeeeecCCC-CeEEecCCccEEEEeeccCceeeeeEE-----cCcceEE
Confidence 99997763 55578999999999999977 499999999999999998654433332 3566689
Q ss_pred EEEEECC-CCCeEEEEeCCCcEEEEeCCCCCCCCCceeeecCCCCCeEEEEEcCCC--CeEEEEecCCcEEEEeCCCCCC
Q 048012 303 TTCAWDC-DGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHSDDITALKFSSDG--RILLSRSFDGSLKVWDLRKMKE 379 (616)
Q Consensus 303 ~~~~~sp-~g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~spdg--~~l~s~s~Dg~v~lwd~~~~~~ 379 (616)
.+++|+| |.+.+|+++.|++|++|.+.+. .+..++.+|...|+||.|-+.| .+|+||+.|.+|+|||.++ +.
T Consensus 144 Mqv~fnPkD~ntFaS~sLDrTVKVWslgs~----~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQt-k~ 218 (794)
T KOG0276|consen 144 MQVAFNPKDPNTFASASLDRTVKVWSLGSP----HPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQT-KS 218 (794)
T ss_pred EEEEecCCCccceeeeeccccEEEEEcCCC----CCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecch-HH
Confidence 9999999 6779999999999999999865 6778889999999999998844 6999999999999999996 67
Q ss_pred cceEecCCCCCCcceeEEECCCCCEEEEeeccccccCCCceEEEEeCCCCceEEEEecCCCCCeEEEEEcCCCCcEEEEe
Q 048012 380 PLKVFEDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREKLELVSRVGISPACSVVQCAWHPKLNQIFATA 459 (616)
Q Consensus 380 ~~~~~~~~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~ 459 (616)
+++++.+|.++ |..++|+|.-.++++|+ .||+++||+..+.++..++.. ...+|++++-++..+.+++|.
T Consensus 219 CV~TLeGHt~N--vs~v~fhp~lpiiisgs-------EDGTvriWhs~Ty~lE~tLn~-gleRvW~I~~~k~~~~i~vG~ 288 (794)
T KOG0276|consen 219 CVQTLEGHTNN--VSFVFFHPELPIIISGS-------EDGTVRIWNSKTYKLEKTLNY-GLERVWCIAAHKGDGKIAVGF 288 (794)
T ss_pred HHHHhhccccc--ceEEEecCCCcEEEEec-------CCccEEEecCcceehhhhhhc-CCceEEEEeecCCCCeEEEec
Confidence 89999988776 99999999999999999 999999999999998888865 457899999999988888888
Q ss_pred ccC
Q 048012 460 GDK 462 (616)
Q Consensus 460 ~d~ 462 (616)
.++
T Consensus 289 Deg 291 (794)
T KOG0276|consen 289 DEG 291 (794)
T ss_pred cCC
Confidence 765
No 33
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=3.1e-31 Score=262.68 Aligned_cols=286 Identities=27% Similarity=0.452 Sum_probs=234.5
Q ss_pred EecCCcccEEEEEECCCCCEEEEEEcCCcEEEEeCCCCccccccceecCCCCCCceEEEEecCCCCeEEEEeCCCeEEEE
Q 048012 144 VLKGHTKIVSALAVDHSGSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSDRFLCVTGSAQAKIY 223 (616)
Q Consensus 144 ~l~~H~~~V~~v~~sp~g~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~s~d~~v~vw 223 (616)
.+++|.+.|++++|+|++++|++++.||.|++|++.+.. .......+...+..+.|++++++|++++.++.|++|
T Consensus 4 ~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~-----~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~ 78 (289)
T cd00200 4 TLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGE-----LLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLW 78 (289)
T ss_pred HhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCC-----cEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEE
Confidence 567999999999999999999999999999999998643 222233466678899999999999999999999999
Q ss_pred ECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEEEECCCccccceEEeeeccCCCCccEE
Q 048012 224 DRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPGRVAVT 303 (616)
Q Consensus 224 d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~ 303 (616)
++..... +..+..|...|.++.|++++ .++++++.|+.|++||+.+.+....+. .+...+.
T Consensus 79 ~~~~~~~------------~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~~------~~~~~i~ 139 (289)
T cd00200 79 DLETGEC------------VRTLTGHTSYVSSVAFSPDG-RILSSSSRDKTIKVWDVETGKCLTTLR------GHTDWVN 139 (289)
T ss_pred EcCcccc------------eEEEeccCCcEEEEEEcCCC-CEEEEecCCCeEEEEECCCcEEEEEec------cCCCcEE
Confidence 9986532 22345788899999999985 588888889999999998655433332 3444799
Q ss_pred EEEECCCCCeEEEEeCCCcEEEEeCCCCCCCCCceeeecCCCCCeEEEEEcCCCCeEEEEecCCcEEEEeCCCCCCcceE
Q 048012 304 TCAWDCDGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHSDDITALKFSSDGRILLSRSFDGSLKVWDLRKMKEPLKV 383 (616)
Q Consensus 304 ~~~~sp~g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~v~lwd~~~~~~~~~~ 383 (616)
+++|++++.++++++.||.|++||++.+ .....+..|...|.++.|+|+++.|++++.|+.|++||++... .+..
T Consensus 140 ~~~~~~~~~~l~~~~~~~~i~i~d~~~~----~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~-~~~~ 214 (289)
T cd00200 140 SVAFSPDGTFVASSSQDGTIKLWDLRTG----KCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGK-CLGT 214 (289)
T ss_pred EEEEcCcCCEEEEEcCCCcEEEEEcccc----ccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCc-eecc
Confidence 9999999999999988999999999865 4566777898899999999999999999999999999998643 3444
Q ss_pred ecCCCCCCcceeEEECCCCCEEEEeeccccccCCCceEEEEeCCCCceEEEEecCCCCCeEEEEEcCCCCcEEEEeccCC
Q 048012 384 FEDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREKLELVSRVGISPACSVVQCAWHPKLNQIFATAGDKS 463 (616)
Q Consensus 384 ~~~~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~ 463 (616)
+.. +...+.+++|++++.++++++ .+|.|++||+.+++.+..+. .+...|.++.|+++++.|++++.
T Consensus 215 ~~~--~~~~i~~~~~~~~~~~~~~~~-------~~~~i~i~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~--- 281 (289)
T cd00200 215 LRG--HENGVNSVAFSPDGYLLASGS-------EDGTIRVWDLRTGECVQTLS-GHTNSVTSLAWSPDGKRLASGSA--- 281 (289)
T ss_pred hhh--cCCceEEEEEcCCCcEEEEEc-------CCCcEEEEEcCCceeEEEcc-ccCCcEEEEEECCCCCEEEEecC---
Confidence 433 334699999999988888887 79999999999988888876 45677999999999888888776
Q ss_pred CCceEEEec
Q 048012 464 QGGTHILYD 472 (616)
Q Consensus 464 ~~~~~~v~~ 472 (616)
++.+.+|+
T Consensus 282 -d~~i~iw~ 289 (289)
T cd00200 282 -DGTIRIWD 289 (289)
T ss_pred -CCeEEecC
Confidence 56777774
No 34
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=2.2e-31 Score=269.10 Aligned_cols=322 Identities=18% Similarity=0.264 Sum_probs=264.3
Q ss_pred ceEEecCCcccEEEEEECCCCCEEEEEEcCCcEEEEeCCCC-----------------------ccccc------cceec
Q 048012 141 NEIVLKGHTKIVSALAVDHSGSRVLSGSYDYTVRMYDFQGM-----------------------NSRLQ------SFRQL 191 (616)
Q Consensus 141 ~~~~l~~H~~~V~~v~~sp~g~~lasgs~Dg~i~iwd~~~~-----------------------~~~~~------~~~~~ 191 (616)
....|.+|+..|-++-|..+...++|.+.||.+.+|.+... ..... ..+..
T Consensus 181 ~~~~l~gHkd~VvacfF~~~~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ 260 (893)
T KOG0291|consen 181 FTYALNGHKDYVVACFFGANSLDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHY 260 (893)
T ss_pred ceEeccCCCcceEEEEeccCcceEEEEecCceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeee
Confidence 35678999999999999999999999999999999987610 00000 00112
Q ss_pred CCCCCCceEEEEecCCCCeEEEEeCCCeEEEEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeC
Q 048012 192 EPSEGHQVRNLSWSPTSDRFLCVTGSAQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSE 271 (616)
Q Consensus 192 ~~~~~~~v~~l~~sp~g~~l~~~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~ 271 (616)
.......|++.+|++..+.|+++-.+|...+|.+....+... +.-....|..+.|+..| ..|+.|+.
T Consensus 261 ln~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~------------LSis~~~I~t~~~N~tG-DWiA~g~~ 327 (893)
T KOG0291|consen 261 LNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHS------------LSISDQKILTVSFNSTG-DWIAFGCS 327 (893)
T ss_pred ecccccceeeeeccCCceEEEEEecCCeeEEEecCCceEEEE------------eecccceeeEEEecccC-CEEEEcCC
Confidence 222336799999999999999999999999999988765322 33344678999999877 57777665
Q ss_pred C-CCEEEEECCCccccceEEeeeccCCCCccEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCCCCCceeeecCCCCCeEE
Q 048012 272 D-GSLRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWDCDGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHSDDITA 350 (616)
Q Consensus 272 D-g~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~ 350 (616)
. |.+.||+.....-+. ...+|-..+++++++|||++||+|+.||.|+|||..++ -++.++..|++.|+.
T Consensus 328 klgQLlVweWqsEsYVl------KQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~Sg----fC~vTFteHts~Vt~ 397 (893)
T KOG0291|consen 328 KLGQLLVWEWQSESYVL------KQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSG----FCFVTFTEHTSGVTA 397 (893)
T ss_pred ccceEEEEEeeccceee------eccccccceeeEEECCCCcEEEeccCCCcEEEEeccCc----eEEEEeccCCCceEE
Confidence 4 899999987643221 12456668999999999999999999999999999987 589999999999999
Q ss_pred EEEcCCCCeEEEEecCCcEEEEeCCCCCCcceEecCCCCCCcceeEEECCCCCEEEEeeccccccCCCceEEEEeCCCCc
Q 048012 351 LKFSSDGRILLSRSFDGSLKVWDLRKMKEPLKVFEDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREKLE 430 (616)
Q Consensus 351 l~~spdg~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~~~ 430 (616)
+.|+..|+.|++.+.||+|+.||+... +..+++.. +......|++..|.|.++++|+. ..=.|.||++++|+
T Consensus 398 v~f~~~g~~llssSLDGtVRAwDlkRY-rNfRTft~-P~p~QfscvavD~sGelV~AG~~------d~F~IfvWS~qTGq 469 (893)
T KOG0291|consen 398 VQFTARGNVLLSSSLDGTVRAWDLKRY-RNFRTFTS-PEPIQFSCVAVDPSGELVCAGAQ------DSFEIFVWSVQTGQ 469 (893)
T ss_pred EEEEecCCEEEEeecCCeEEeeeeccc-ceeeeecC-CCceeeeEEEEcCCCCEEEeecc------ceEEEEEEEeecCe
Confidence 999999999999999999999999863 44666643 44455789999999999999983 33469999999999
Q ss_pred eEEEEecCCCCCeEEEEEcCCCCcEEEEeccCCCCceEEEec-------------------ccCCCCCcEEEEecCCcce
Q 048012 431 LVSRVGISPACSVVQCAWHPKLNQIFATAGDKSQGGTHILYD-------------------PRLSERGALVCVARAPRKK 491 (616)
Q Consensus 431 ~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~~~~~~~v~~-------------------~~~s~~g~~l~s~~~d~~~ 491 (616)
++..+.. |.++|.+++|+|.+..|++++. +.++++|+ ++|+|+|+-||++..|+.+
T Consensus 470 llDiLsG-HEgPVs~l~f~~~~~~LaS~SW----DkTVRiW~if~s~~~vEtl~i~sdvl~vsfrPdG~elaVaTldgqI 544 (893)
T KOG0291|consen 470 LLDILSG-HEGPVSGLSFSPDGSLLASGSW----DKTVRIWDIFSSSGTVETLEIRSDVLAVSFRPDGKELAVATLDGQI 544 (893)
T ss_pred eeehhcC-CCCcceeeEEccccCeEEeccc----cceEEEEEeeccCceeeeEeeccceeEEEEcCCCCeEEEEEecceE
Confidence 9999875 8899999999999999999998 77889988 6689999999999999999
Q ss_pred ecccccC
Q 048012 492 SVDDFEV 498 (616)
Q Consensus 492 ~~wd~~~ 498 (616)
.+||...
T Consensus 545 tf~d~~~ 551 (893)
T KOG0291|consen 545 TFFDIKE 551 (893)
T ss_pred EEEEhhh
Confidence 9999843
No 35
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=4.6e-30 Score=224.45 Aligned_cols=309 Identities=17% Similarity=0.202 Sum_probs=228.6
Q ss_pred CCCcceEEecCCcccEEEEEECCCCCEEEEEEcCCcEEEEeCCCCcc-------cc---ccceecCCCCCCceEEEEecC
Q 048012 137 IPMSNEIVLKGHTKIVSALAVDHSGSRVLSGSYDYTVRMYDFQGMNS-------RL---QSFRQLEPSEGHQVRNLSWSP 206 (616)
Q Consensus 137 ~p~~~~~~l~~H~~~V~~v~~sp~g~~lasgs~Dg~i~iwd~~~~~~-------~~---~~~~~~~~~~~~~v~~l~~sp 206 (616)
.+-...+.....+.+|.+++|+|.|.+.|.|+...++||..+..... .. ...-.....|.+.|+|.+|+|
T Consensus 20 k~~f~~i~~l~dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~ 99 (350)
T KOG0641|consen 20 KKHFEAINILEDSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSP 99 (350)
T ss_pred ccceEEEEEecchhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecC
Confidence 34444566667899999999999999999999999999987543211 01 111122345777899999999
Q ss_pred CCCeEEEEeCCCeEEEEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCC---CCCEEEEEe-CCCCEEEEECCC
Q 048012 207 TSDRFLCVTGSAQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPK---TKETILTSS-EDGSLRIWDVNE 282 (616)
Q Consensus 207 ~g~~l~~~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~---~~~~l~s~s-~Dg~v~iwd~~~ 282 (616)
+|.+|++++.|..|++.-++....... .. -..+.-|.+.|..++|..+ +..+|++++ .|..|++-|..+
T Consensus 100 ~geliatgsndk~ik~l~fn~dt~~~~-g~------dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~ 172 (350)
T KOG0641|consen 100 CGELIATGSNDKTIKVLPFNADTCNAT-GH------DLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGR 172 (350)
T ss_pred ccCeEEecCCCceEEEEeccccccccc-Cc------ceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCC
Confidence 999999999999999988764432110 00 1124567788888888643 345666654 477788888877
Q ss_pred ccccceEEeeeccCCCCccEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCCCCCceeeecCC---CCCeEEEEEcCCCCe
Q 048012 283 FKSQKQVIKPKLARPGRVAVTTCAWDCDGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGH---SDDITALKFSSDGRI 359 (616)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~h---~~~V~~l~~spdg~~ 359 (616)
++....+ .+|.+.|.++ |+-+|-++++|+.|.+|++||++-+.+.+..-..+... .+.|.+++..|.|++
T Consensus 173 g~~~~a~------sghtghilal-yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrl 245 (350)
T KOG0641|consen 173 GQGFHAL------SGHTGHILAL-YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRL 245 (350)
T ss_pred CCcceee------cCCcccEEEE-EEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcce
Confidence 6654433 3566677776 56679999999999999999999763222111122221 256999999999999
Q ss_pred EEEEecCCcEEEEeCCCCCCcceEecCCCCCCcceeEEECCCCCEEEEeeccccccCCCceEEEEeCCCC---ceEEEEe
Q 048012 360 LLSRSFDGSLKVWDLRKMKEPLKVFEDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREKL---ELVSRVG 436 (616)
Q Consensus 360 l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~~---~~~~~~~ 436 (616)
|++|-.|....+||++. +++++.+ +++...|.++.|||...||++|+ .|..|++-|+... ++...+.
T Consensus 246 l~sg~~dssc~lydirg-~r~iq~f--~phsadir~vrfsp~a~yllt~s-------yd~~ikltdlqgdla~el~~~vv 315 (350)
T KOG0641|consen 246 LASGHADSSCMLYDIRG-GRMIQRF--HPHSADIRCVRFSPGAHYLLTCS-------YDMKIKLTDLQGDLAHELPIMVV 315 (350)
T ss_pred eeeccCCCceEEEEeeC-Cceeeee--CCCccceeEEEeCCCceEEEEec-------ccceEEEeecccchhhcCceEEE
Confidence 99999999999999995 5566665 45667799999999999999999 8999999998632 3333344
Q ss_pred cCCCCCeEEEEEcCCCCcEEEEeccCCCCceEEEecc
Q 048012 437 ISPACSVVQCAWHPKLNQIFATAGDKSQGGTHILYDP 473 (616)
Q Consensus 437 ~~~~~~v~~~~~~p~~~~l~~~~~d~~~~~~~~v~~~ 473 (616)
..|...++.|.|||+.-.+++++. +.+..+|.+
T Consensus 316 ~ehkdk~i~~rwh~~d~sfisssa----dkt~tlwa~ 348 (350)
T KOG0641|consen 316 AEHKDKAIQCRWHPQDFSFISSSA----DKTATLWAL 348 (350)
T ss_pred EeccCceEEEEecCccceeeeccC----cceEEEecc
Confidence 467888999999999888888877 667888865
No 36
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.8e-31 Score=269.62 Aligned_cols=295 Identities=17% Similarity=0.254 Sum_probs=250.7
Q ss_pred ecCCcccEEEEEEC-CCCCEEEEEEcCCcEEEEeCCCCccccccceecCCCCCCceEEEEecCCCCeEEEEeCCCeEEEE
Q 048012 145 LKGHTKIVSALAVD-HSGSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSDRFLCVTGSAQAKIY 223 (616)
Q Consensus 145 l~~H~~~V~~v~~s-p~g~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~s~d~~v~vw 223 (616)
+-|..+.|..|+|- |..++||.+++.+.+|+|++.++... +.++|...|.++....+|.+|++++.|+++++|
T Consensus 319 ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~------ii~GH~e~vlSL~~~~~g~llat~sKD~svilW 392 (775)
T KOG0319|consen 319 IVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQ------IIPGHTEAVLSLDVWSSGDLLATGSKDKSVILW 392 (775)
T ss_pred hcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceE------EEeCchhheeeeeecccCcEEEEecCCceEEEE
Confidence 45778889999885 56789999999999999998886432 667788889999966778999999999999999
Q ss_pred ECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEEEECCCccccce---EEeeeccCCCCc
Q 048012 224 DRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQ---VIKPKLARPGRV 300 (616)
Q Consensus 224 d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~~---~~~~~~~~~~~~ 300 (616)
.++...... ..+....+|.+.|.+++++..+..+|+++|.|++|++|++...+.... +........|..
T Consensus 393 r~~~~~~~~--------~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdK 464 (775)
T KOG0319|consen 393 RLNNNCSKS--------LCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDK 464 (775)
T ss_pred EecCCcchh--------hhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcc
Confidence 985433211 235567899999999999988888999999999999999986322211 111123346777
Q ss_pred cEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCCCCCceeeecCCCCCeEEEEEcCCCCeEEEEecCCcEEEEeCCCCCCc
Q 048012 301 AVTTCAWDCDGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHSDDITALKFSSDGRILLSRSFDGSLKVWDLRKMKEP 380 (616)
Q Consensus 301 ~v~~~~~sp~g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~v~lwd~~~~~~~ 380 (616)
.|+|++++|+.++||+|+.|.+.+||++... ....++.+|...|++|.|++..+.|+|+|.|++|+||.+.++ .+
T Consensus 465 dIN~Vaia~ndkLiAT~SqDktaKiW~le~~----~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~f-SC 539 (775)
T KOG0319|consen 465 DINCVAIAPNDKLIATGSQDKTAKIWDLEQL----RLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTF-SC 539 (775)
T ss_pred cccceEecCCCceEEecccccceeeecccCc----eEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccc-ee
Confidence 8999999999999999999999999999955 788999999999999999999999999999999999999975 56
Q ss_pred ceEecCCCCCCcceeEEECCCCCEEEEeeccccccCCCceEEEEeCCCCceEEEEecCCCCCeEEEEEcCCCCcEEEEec
Q 048012 381 LKVFEDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREKLELVSRVGISPACSVVQCAWHPKLNQIFATAG 460 (616)
Q Consensus 381 ~~~~~~~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~ 460 (616)
++++.+|. ..|..+.|-.+|+.|++++ .||.|+||++++.+|+.++.. |...|++++-++....++++++
T Consensus 540 lkT~eGH~--~aVlra~F~~~~~qliS~~-------adGliKlWnikt~eC~~tlD~-H~DrvWaL~~~~~~~~~~tgg~ 609 (775)
T KOG0319|consen 540 LKTFEGHT--SAVLRASFIRNGKQLISAG-------ADGLIKLWNIKTNECEMTLDA-HNDRVWALSVSPLLDMFVTGGG 609 (775)
T ss_pred eeeecCcc--ceeEeeeeeeCCcEEEecc-------CCCcEEEEeccchhhhhhhhh-ccceeEEEeecCccceeEecCC
Confidence 88888765 4599999999999999999 899999999999999999986 7889999999999998888888
Q ss_pred cCCCCceEEEec
Q 048012 461 DKSQGGTHILYD 472 (616)
Q Consensus 461 d~~~~~~~~v~~ 472 (616)
++.+.+|.
T Consensus 610 ----Dg~i~~wk 617 (775)
T KOG0319|consen 610 ----DGRIIFWK 617 (775)
T ss_pred ----CeEEEEee
Confidence 67788885
No 37
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=6.2e-31 Score=245.58 Aligned_cols=288 Identities=18% Similarity=0.294 Sum_probs=233.2
Q ss_pred eEEecCCcccEEEEEECCCCCEEEEEEcCCcEEEEeCCCCccccccceecCCCCCCceEEEEecCCCCeEEEEeCCCeEE
Q 048012 142 EIVLKGHTKIVSALAVDHSGSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSDRFLCVTGSAQAK 221 (616)
Q Consensus 142 ~~~l~~H~~~V~~v~~sp~g~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~s~d~~v~ 221 (616)
...+.+|...|+|+.|+.+|.+||||+.+|.|+||...++....... .....|.-+.|+|.+..|++|+.||.+.
T Consensus 99 ~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~-----~e~~dieWl~WHp~a~illAG~~DGsvW 173 (399)
T KOG0296|consen 99 AGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLD-----QEVEDIEWLKWHPRAHILLAGSTDGSVW 173 (399)
T ss_pred eeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEee-----cccCceEEEEecccccEEEeecCCCcEE
Confidence 34678999999999999999999999999999999998764322221 3445688999999999999999999999
Q ss_pred EEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEEEECCCccccceEEeeeccCCCCcc
Q 048012 222 IYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPGRVA 301 (616)
Q Consensus 222 vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~ 301 (616)
+|.+..... .+.+.||...+++..|.|+|+ .++++..||+|++||+.++.....+.... ...
T Consensus 174 mw~ip~~~~------------~kv~~Gh~~~ct~G~f~pdGK-r~~tgy~dgti~~Wn~ktg~p~~~~~~~e-----~~~ 235 (399)
T KOG0296|consen 174 MWQIPSQAL------------CKVMSGHNSPCTCGEFIPDGK-RILTGYDDGTIIVWNPKTGQPLHKITQAE-----GLE 235 (399)
T ss_pred EEECCCcce------------eeEecCCCCCcccccccCCCc-eEEEEecCceEEEEecCCCceeEEecccc-----cCc
Confidence 999987543 444789999999999999985 89999999999999999886555443221 225
Q ss_pred EEEEEECCCCCeEEEEeCCCcEEEEeCCCCCCCCCceeeec--------CCCCCeEEEEE---cCCCCeEEEEecCCcEE
Q 048012 302 VTTCAWDCDGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEK--------GHSDDITALKF---SSDGRILLSRSFDGSLK 370 (616)
Q Consensus 302 v~~~~~sp~g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~--------~h~~~V~~l~~---spdg~~l~s~s~Dg~v~ 370 (616)
..++.++..+..++.|..++.+++.+..++ +.+.... .+...+.||.| +..-.+.|+|+.||+|.
T Consensus 236 ~~~~~~~~~~~~~~~g~~e~~~~~~~~~sg----KVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~ 311 (399)
T KOG0296|consen 236 LPCISLNLAGSTLTKGNSEGVACGVNNGSG----KVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIA 311 (399)
T ss_pred CCccccccccceeEeccCCccEEEEccccc----eEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEE
Confidence 678889999999999999999999887766 3433333 34444555554 44667889999999999
Q ss_pred EEeCCCCCCcceEecCCCCCCcceeEEECCCCCEEEEeeccccccCCCceEEEEeCCCCceEEEEecCCCCCeEEEEEcC
Q 048012 371 VWDLRKMKEPLKVFEDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREKLELVSRVGISPACSVVQCAWHP 450 (616)
Q Consensus 371 lwd~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p 450 (616)
|||+.... ++.. ..+...|+.+.|-+ ..+|++++ .+|.|++||.++|+++..+.. |...|.+++.+|
T Consensus 312 iyD~a~~~--~R~~--c~he~~V~~l~w~~-t~~l~t~c-------~~g~v~~wDaRtG~l~~~y~G-H~~~Il~f~ls~ 378 (399)
T KOG0296|consen 312 IYDLAAST--LRHI--CEHEDGVTKLKWLN-TDYLLTAC-------ANGKVRQWDARTGQLKFTYTG-HQMGILDFALSP 378 (399)
T ss_pred EEecccch--hhee--ccCCCceEEEEEcC-cchheeec-------cCceEEeeeccccceEEEEec-CchheeEEEEcC
Confidence 99998643 2222 23445599999999 88999998 899999999999999999975 788899999999
Q ss_pred CCCcEEEEeccCCCCceEEEecc
Q 048012 451 KLNQIFATAGDKSQGGTHILYDP 473 (616)
Q Consensus 451 ~~~~l~~~~~d~~~~~~~~v~~~ 473 (616)
+.+.+++++. +++.+||.+
T Consensus 379 ~~~~vvT~s~----D~~a~VF~v 397 (399)
T KOG0296|consen 379 QKRLVVTVSD----DNTALVFEV 397 (399)
T ss_pred CCcEEEEecC----CCeEEEEec
Confidence 9999999887 778888865
No 38
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.98 E-value=9.6e-31 Score=238.90 Aligned_cols=304 Identities=17% Similarity=0.289 Sum_probs=241.5
Q ss_pred ceEEecCCcccEEEEEECCCCCEEEEEEcCCcEEEEeCCCCcc-------------ccccceecCCCCCCceEEEEecCC
Q 048012 141 NEIVLKGHTKIVSALAVDHSGSRVLSGSYDYTVRMYDFQGMNS-------------RLQSFRQLEPSEGHQVRNLSWSPT 207 (616)
Q Consensus 141 ~~~~l~~H~~~V~~v~~sp~g~~lasgs~Dg~i~iwd~~~~~~-------------~~~~~~~~~~~~~~~v~~l~~sp~ 207 (616)
....+..|..++.+.+|++||.++||||.|..|+|.|++.+-. ....+....-.|...|.++.|+|.
T Consensus 104 Et~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPr 183 (430)
T KOG0640|consen 104 ETKYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPR 183 (430)
T ss_pred ceEEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecch
Confidence 3457889999999999999999999999999999999873311 111222233346667999999999
Q ss_pred CCeEEEEeCCCeEEEEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEEEECCCccccc
Q 048012 208 SDRFLCVTGSAQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQK 287 (616)
Q Consensus 208 g~~l~~~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~ 287 (616)
...|++++.|++|++||+....... ......-...|.++.|||.| .+|+.|..-.++|+||+++.++..
T Consensus 184 e~ILiS~srD~tvKlFDfsK~saKr----------A~K~~qd~~~vrsiSfHPsG-efllvgTdHp~~rlYdv~T~Qcfv 252 (430)
T KOG0640|consen 184 ETILISGSRDNTVKLFDFSKTSAKR----------AFKVFQDTEPVRSISFHPSG-EFLLVGTDHPTLRLYDVNTYQCFV 252 (430)
T ss_pred hheEEeccCCCeEEEEecccHHHHH----------HHHHhhccceeeeEeecCCC-ceEEEecCCCceeEEeccceeEee
Confidence 9999999999999999987543211 11122345689999999977 699999999999999999876543
Q ss_pred eEEeeeccCCCCccEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCCCCCcee-eecCCCC-CeEEEEEcCCCCeEEEEec
Q 048012 288 QVIKPKLARPGRVAVTTCAWDCDGKCIAGGIGDGSIQVWNLKPGWGSRPDIH-VEKGHSD-DITALKFSSDGRILLSRSF 365 (616)
Q Consensus 288 ~~~~~~~~~~~~~~v~~~~~sp~g~~l~~g~~dg~I~iwd~~~~~~~~~~~~-~~~~h~~-~V~~l~~spdg~~l~s~s~ 365 (616)
.. .....|...|+++.|++.|++.++|+.||.|+|||--++ .++. .-.+|.+ .|.+..|..+|++|++.+.
T Consensus 253 sa---nPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~----rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~ 325 (430)
T KOG0640|consen 253 SA---NPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSN----RCVRTIGNAHGGSEVCSAVFTKNGKYILSSGK 325 (430)
T ss_pred ec---CcccccccceeEEEecCCccEEEEeccCCcEEeeccccH----HHHHHHHhhcCCceeeeEEEccCCeEEeecCC
Confidence 32 344567779999999999999999999999999998765 3444 3457764 5999999999999999999
Q ss_pred CCcEEEEeCCCCCCcceEecCCCCC---CcceeEEECCCCCEEEEeeccccccCCCceEEEEeCCCCceEEEEecCCCCC
Q 048012 366 DGSLKVWDLRKMKEPLKVFEDLPNN---YAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREKLELVSRVGISPACS 442 (616)
Q Consensus 366 Dg~v~lwd~~~~~~~~~~~~~~~~~---~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 442 (616)
|..|+||.+.+++ ++..+.+.... ..-+...|+....|++.-.. ..+.++-||.++...+..+...|++.
T Consensus 326 DS~vkLWEi~t~R-~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDE------as~slcsWdaRtadr~~l~slgHn~a 398 (430)
T KOG0640|consen 326 DSTVKLWEISTGR-MLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDE------ASNSLCSWDARTADRVALLSLGHNGA 398 (430)
T ss_pred cceeeeeeecCCc-eEEEEecCCcccchhhhhhhhhcCccceEEcccc------ccCceeeccccchhhhhhcccCCCCC
Confidence 9999999999754 45555544211 12356778888888887653 56889999999999998888889999
Q ss_pred eEEEEEcCCCCcEEEEeccCCCCceEEEecc
Q 048012 443 VVQCAWHPKLNQIFATAGDKSQGGTHILYDP 473 (616)
Q Consensus 443 v~~~~~~p~~~~l~~~~~d~~~~~~~~v~~~ 473 (616)
+..+.-+|.+..+++++. +...++|--
T Consensus 399 ~R~i~HSP~~p~FmTcsd----D~raRFWyr 425 (430)
T KOG0640|consen 399 VRWIVHSPVEPAFMTCSD----DFRARFWYR 425 (430)
T ss_pred ceEEEeCCCCCceeeecc----cceeeeeee
Confidence 999999999888887776 778888853
No 39
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.98 E-value=4.3e-30 Score=269.95 Aligned_cols=271 Identities=24% Similarity=0.447 Sum_probs=216.4
Q ss_pred CCCCceEEEEecCCCCeEEEEeCCCeEEEEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCC
Q 048012 194 SEGHQVRNLSWSPTSDRFLCVTGSAQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDG 273 (616)
Q Consensus 194 ~~~~~v~~l~~sp~g~~l~~~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg 273 (616)
.+...|.++.|+++|++|++++.++.+++|+...... ..++.+.+|...|.+++|+|++. ++++++.|+
T Consensus 157 ~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~----------~~~~~l~~h~~~v~~~~fs~d~~-~l~s~s~D~ 225 (456)
T KOG0266|consen 157 HECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKS----------NLLRELSGHTRGVSDVAFSPDGS-YLLSGSDDK 225 (456)
T ss_pred cccCceEEEEEcCCCCeEEEccCCCcEEEeecccccc----------hhhccccccccceeeeEECCCCc-EEEEecCCc
Confidence 3466799999999999999999999999999854431 12445689999999999999884 999999999
Q ss_pred CEEEEECCCc-cccceEEeeeccCCCCccEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCCCCCceeeecCCCCCeEEEE
Q 048012 274 SLRIWDVNEF-KSQKQVIKPKLARPGRVAVTTCAWDCDGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHSDDITALK 352 (616)
Q Consensus 274 ~v~iwd~~~~-~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~ 352 (616)
+|+|||+... ...+.+ .+|...|++++|+|+|+++++|+.|++|+|||++++ .++..+.+|...|++++
T Consensus 226 tiriwd~~~~~~~~~~l------~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~----~~~~~l~~hs~~is~~~ 295 (456)
T KOG0266|consen 226 TLRIWDLKDDGRNLKTL------KGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTG----ECVRKLKGHSDGISGLA 295 (456)
T ss_pred eEEEeeccCCCeEEEEe------cCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCC----eEEEeeeccCCceEEEE
Confidence 9999999433 333332 367778999999999999999999999999999986 78999999999999999
Q ss_pred EcCCCCeEEEEecCCcEEEEeCCCCCC-cceEecCCCCCCcceeEEECCCCCEEEEeeccccccCCCceEEEEeCCCCce
Q 048012 353 FSSDGRILLSRSFDGSLKVWDLRKMKE-PLKVFEDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREKLEL 431 (616)
Q Consensus 353 ~spdg~~l~s~s~Dg~v~lwd~~~~~~-~~~~~~~~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~~~~ 431 (616)
|++++++|++++.|+.|+|||+.++.. ++..+........+++++|+|++.+|+++. .|+.+++||+..+.+
T Consensus 296 f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~-------~d~~~~~w~l~~~~~ 368 (456)
T KOG0266|consen 296 FSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSAS-------LDRTLKLWDLRSGKS 368 (456)
T ss_pred ECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEec-------CCCeEEEEEccCCcc
Confidence 999999999999999999999998653 234444433322689999999999999999 899999999999999
Q ss_pred EEEEecCCCC--CeEEEEEcCCCCcEEEEeccCCCCceEEEec--------------------ccCCCCCcEEEEec--C
Q 048012 432 VSRVGISPAC--SVVQCAWHPKLNQIFATAGDKSQGGTHILYD--------------------PRLSERGALVCVAR--A 487 (616)
Q Consensus 432 ~~~~~~~~~~--~v~~~~~~p~~~~l~~~~~d~~~~~~~~v~~--------------------~~~s~~g~~l~s~~--~ 487 (616)
+..+...... .+.+...++.+..|++++. ++.+.+|+ +++++...++++.+ .
T Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~----d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~~ 444 (456)
T KOG0266|consen 369 VGTYTGHSNLVRCIFSPTLSTGGKLIYSGSE----DGSVYVWDSSSGGILQRLEGHSKAAVSDLSSHPTENLIASSSFEG 444 (456)
T ss_pred eeeecccCCcceeEecccccCCCCeEEEEeC----CceEEEEeCCccchhhhhcCCCCCceeccccCCCcCeeeecCcCC
Confidence 9888764443 3344455677788888887 44555555 44455556666665 4
Q ss_pred Ccceecccc
Q 048012 488 PRKKSVDDF 496 (616)
Q Consensus 488 d~~~~~wd~ 496 (616)
|+.+++|..
T Consensus 445 d~~~~~w~~ 453 (456)
T KOG0266|consen 445 DGLIRLWKY 453 (456)
T ss_pred CceEEEecC
Confidence 566666654
No 40
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.98 E-value=4.1e-30 Score=263.65 Aligned_cols=314 Identities=18% Similarity=0.241 Sum_probs=254.4
Q ss_pred ecCCcccEEEEEECCCCCEEEEEEcCCcEEEEeCCCCccccccceecCCCCCCceEEEEecCCCCeEEEEeCCCeEEEEE
Q 048012 145 LKGHTKIVSALAVDHSGSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSDRFLCVTGSAQAKIYD 224 (616)
Q Consensus 145 l~~H~~~V~~v~~sp~g~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~s~d~~v~vwd 224 (616)
+..-+..|..++|+|...+++++-..|.|++||..-+ .+......|.++|+.++|+|++..+++|+.|..|+||+
T Consensus 5 fEskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~-----tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWn 79 (1202)
T KOG0292|consen 5 FESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMG-----TLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWN 79 (1202)
T ss_pred hhcccccccceecCCCCCEEEEeecCceeeeehhhhh-----hHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEe
Confidence 3455778999999999999999999999999998632 23333446889999999999999999999999999999
Q ss_pred CCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEEEECCCccccceEEeeeccCCCCccEEE
Q 048012 225 RDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPGRVAVTT 304 (616)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~ 304 (616)
..... .+.++.||..-|..+.||+.- .+|+++|.|.+||||+..+.+++..+. +|...|.|
T Consensus 80 Yk~rr------------clftL~GHlDYVRt~~FHhey-PWIlSASDDQTIrIWNwqsr~~iavlt------GHnHYVMc 140 (1202)
T KOG0292|consen 80 YKTRR------------CLFTLLGHLDYVRTVFFHHEY-PWILSASDDQTIRIWNWQSRKCIAVLT------GHNHYVMC 140 (1202)
T ss_pred cccce------------ehhhhccccceeEEeeccCCC-ceEEEccCCCeEEEEeccCCceEEEEe------cCceEEEe
Confidence 98765 477789999999999999966 599999999999999999887766553 55558999
Q ss_pred EEECCCCCeEEEEeCCCcEEEEeCCCCCC-------------------------CCCceeeecCCCCCeEEEEEcCCCCe
Q 048012 305 CAWDCDGKCIAGGIGDGSIQVWNLKPGWG-------------------------SRPDIHVEKGHSDDITALKFSSDGRI 359 (616)
Q Consensus 305 ~~~sp~g~~l~~g~~dg~I~iwd~~~~~~-------------------------~~~~~~~~~~h~~~V~~l~~spdg~~ 359 (616)
..|+|...++++++-|.+||+||+..-.. .......+.+|...|+-++|+|.-.+
T Consensus 141 AqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpl 220 (1202)
T KOG0292|consen 141 AQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPL 220 (1202)
T ss_pred eccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcce
Confidence 99999999999999999999999854210 01123456799999999999999999
Q ss_pred EEEEecCCcEEEEeCCCCCC-cceEecCCCCCCcceeEEECCCCCEEEEeeccccccCCCceEEEEeCCCCceEEEEecC
Q 048012 360 LLSRSFDGSLKVWDLRKMKE-PLKVFEDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREKLELVSRVGIS 438 (616)
Q Consensus 360 l~s~s~Dg~v~lwd~~~~~~-~~~~~~~~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~~~~~~~~~~~ 438 (616)
|+||+.|..|++|.+...+. .+.+..+ |...|+++-|+|...+|++.+ .|+.|+|||+...+.++++..
T Consensus 221 iVSG~DDRqVKlWrmnetKaWEvDtcrg--H~nnVssvlfhp~q~lIlSns-------EDksirVwDm~kRt~v~tfrr- 290 (1202)
T KOG0292|consen 221 IVSGADDRQVKLWRMNETKAWEVDTCRG--HYNNVSSVLFHPHQDLILSNS-------EDKSIRVWDMTKRTSVQTFRR- 290 (1202)
T ss_pred EEecCCcceeeEEEeccccceeehhhhc--ccCCcceEEecCccceeEecC-------CCccEEEEecccccceeeeec-
Confidence 99999999999999875432 1223334 445599999999999999999 999999999999999999975
Q ss_pred CCCCeEEEEEcCCCCcEEEEeccCCCCceEEEeccc-----CCCCCcEEEEecCCcceecccccC
Q 048012 439 PACSVVQCAWHPKLNQIFATAGDKSQGGTHILYDPR-----LSERGALVCVARAPRKKSVDDFEV 498 (616)
Q Consensus 439 ~~~~v~~~~~~p~~~~l~~~~~d~~~~~~~~v~~~~-----~s~~g~~l~s~~~d~~~~~wd~~~ 498 (616)
.+...+.++-||..|.+++|.. +-..||-+. +--+|..|.-.. ++.++..|+.+
T Consensus 291 endRFW~laahP~lNLfAAgHD-----sGm~VFkleRErpa~~v~~n~LfYvk-d~~i~~~d~~t 349 (1202)
T KOG0292|consen 291 ENDRFWILAAHPELNLFAAGHD-----SGMIVFKLERERPAYAVNGNGLFYVK-DRFIRSYDLRT 349 (1202)
T ss_pred cCCeEEEEEecCCcceeeeecC-----CceEEEEEcccCceEEEcCCEEEEEc-cceEEeeeccc
Confidence 4578999999999998887774 334555433 222455555554 77788777754
No 41
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.98 E-value=8.6e-30 Score=227.76 Aligned_cols=280 Identities=19% Similarity=0.333 Sum_probs=229.7
Q ss_pred EEecCCcccEEEEEECCCCCEEEEEEcCCcEEEEeCCCCccccccceecCCCCCCceEEEEecCC-CCeEEEEeCCCeEE
Q 048012 143 IVLKGHTKIVSALAVDHSGSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPT-SDRFLCVTGSAQAK 221 (616)
Q Consensus 143 ~~l~~H~~~V~~v~~sp~g~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~-g~~l~~~s~d~~v~ 221 (616)
..+.+|.+.|.+|+|+.+|..|++|+.|+++++|++.... .........|+..|-.++|+|. .+.|+++++|..|+
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r---~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir 90 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDR---FRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIR 90 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchh---hhhhhcccCCCcchhhheeCCCCCcceEEecCCceEE
Confidence 4678999999999999999999999999999999998641 1222334456777999999885 56899999999999
Q ss_pred EEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEEEECCCccccceEEeeeccCCCCcc
Q 048012 222 IYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPGRVA 301 (616)
Q Consensus 222 vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~ 301 (616)
+||+...+.... .. ....=.-+.|+|++ .+++.++.|..|.+.|.++.+....... ...
T Consensus 91 ~wd~r~~k~~~~------------i~-~~~eni~i~wsp~g-~~~~~~~kdD~it~id~r~~~~~~~~~~-------~~e 149 (313)
T KOG1407|consen 91 IWDIRSGKCTAR------------IE-TKGENINITWSPDG-EYIAVGNKDDRITFIDARTYKIVNEEQF-------KFE 149 (313)
T ss_pred EEEeccCcEEEE------------ee-ccCcceEEEEcCCC-CEEEEecCcccEEEEEecccceeehhcc-------cce
Confidence 999876543211 11 11222456899988 5899999999999999987654433322 125
Q ss_pred EEEEEECCCCCeEEEEeCCCcEEEEeCCCCCCCCCceeeecCCCCCeEEEEEcCCCCeEEEEecCCcEEEEeCCCCCCcc
Q 048012 302 VTTCAWDCDGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHSDDITALKFSSDGRILLSRSFDGSLKVWDLRKMKEPL 381 (616)
Q Consensus 302 v~~~~~sp~g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~v~lwd~~~~~~~~ 381 (616)
+.-++|+.++.+++.....|+|.|...... +.+..+++|.....||.|+|+|++||+|+.|..+.|||+... .++
T Consensus 150 ~ne~~w~~~nd~Fflt~GlG~v~ILsypsL----kpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~EL-iC~ 224 (313)
T KOG1407|consen 150 VNEISWNNSNDLFFLTNGLGCVEILSYPSL----KPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDEL-ICE 224 (313)
T ss_pred eeeeeecCCCCEEEEecCCceEEEEecccc----ccccccccCCcceEEEEECCCCceEeeccccceeeccChhHh-hhh
Confidence 788899988888888888899999988754 788999999999999999999999999999999999999864 456
Q ss_pred eEecCCCCCCcceeEEECCCCCEEEEeeccccccCCCceEEEEeCCCCceEEEEecCCCCCeEEEEEcCCCCcEEEEecc
Q 048012 382 KVFEDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREKLELVSRVGISPACSVVQCAWHPKLNQIFATAGD 461 (616)
Q Consensus 382 ~~~~~~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d 461 (616)
+.+.. ...+|+.+.||.||++||+++ .|..|-|=++++|..+..++ ..++...|+|||+...|+.++.|
T Consensus 225 R~isR--ldwpVRTlSFS~dg~~lASaS-------EDh~IDIA~vetGd~~~eI~--~~~~t~tVAWHPk~~LLAyA~dd 293 (313)
T KOG1407|consen 225 RCISR--LDWPVRTLSFSHDGRMLASAS-------EDHFIDIAEVETGDRVWEIP--CEGPTFTVAWHPKRPLLAYACDD 293 (313)
T ss_pred eeecc--ccCceEEEEeccCcceeeccC-------ccceEEeEecccCCeEEEee--ccCCceeEEecCCCceeeEEecC
Confidence 66655 447799999999999999999 99999999999999999985 56889999999999999999887
Q ss_pred C
Q 048012 462 K 462 (616)
Q Consensus 462 ~ 462 (616)
+
T Consensus 294 k 294 (313)
T KOG1407|consen 294 K 294 (313)
T ss_pred C
Confidence 4
No 42
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.98 E-value=1.4e-31 Score=253.37 Aligned_cols=294 Identities=18% Similarity=0.326 Sum_probs=243.4
Q ss_pred CCCCcceEEecCCcccEEEEEECCCCCEEEEEEcCCcEEEEeCCCCccccccceecCCCCCCceEEEEecCCCCeEEEEe
Q 048012 136 QIPMSNEIVLKGHTKIVSALAVDHSGSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSDRFLCVT 215 (616)
Q Consensus 136 ~~p~~~~~~l~~H~~~V~~v~~sp~g~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~s 215 (616)
.+|......+..|.+.|..+.|-++...|++|+.|..|++|++.+.. ..+.....+..+.|+++.|.+++.++++++
T Consensus 162 ~lpS~~~~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k---~~~~~tLaGs~g~it~~d~d~~~~~~iAas 238 (459)
T KOG0288|consen 162 TLPSRALFVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEK---SELISTLAGSLGNITSIDFDSDNKHVIAAS 238 (459)
T ss_pred ccchhhhhhhhccccccceeEEccCcchhhhcchhhhhhhhhcccch---hhhhhhhhccCCCcceeeecCCCceEEeec
Confidence 57778888999999999999999998999999999999999987653 223344445667899999999999999999
Q ss_pred CCCeEEEEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEEEECCCccccceEEeeecc
Q 048012 216 GSAQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLA 295 (616)
Q Consensus 216 ~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~ 295 (616)
.|+.+++|+++...+ +.++.||...|+++.|.-.. ..+++|+.|.+|++||+....+.+.+....
T Consensus 239 ~d~~~r~Wnvd~~r~------------~~TLsGHtdkVt~ak~~~~~-~~vVsgs~DRtiK~WDl~k~~C~kt~l~~S-- 303 (459)
T KOG0288|consen 239 NDKNLRLWNVDSLRL------------RHTLSGHTDKVTAAKFKLSH-SRVVSGSADRTIKLWDLQKAYCSKTVLPGS-- 303 (459)
T ss_pred CCCceeeeeccchhh------------hhhhcccccceeeehhhccc-cceeeccccchhhhhhhhhhheeccccccc--
Confidence 999999999997764 66789999999999998865 359999999999999999877766654322
Q ss_pred CCCCccEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCCCCCceeeecCCCCCeEEEEEcCCCCeEEEEecCCcEEEEeCC
Q 048012 296 RPGRVAVTTCAWDCDGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHSDDITALKFSSDGRILLSRSFDGSLKVWDLR 375 (616)
Q Consensus 296 ~~~~~~v~~~~~sp~g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~v~lwd~~ 375 (616)
.+..|+.+ ...+++|..|+.|++||+++. ........+. .|++|..+++|..|++++.|.++.+.|++
T Consensus 304 -----~cnDI~~~--~~~~~SgH~DkkvRfwD~Rs~----~~~~sv~~gg-~vtSl~ls~~g~~lLsssRDdtl~viDlR 371 (459)
T KOG0288|consen 304 -----QCNDIVCS--ISDVISGHFDKKVRFWDIRSA----DKTRSVPLGG-RVTSLDLSMDGLELLSSSRDDTLKVIDLR 371 (459)
T ss_pred -----cccceEec--ceeeeecccccceEEEeccCC----ceeeEeecCc-ceeeEeeccCCeEEeeecCCCceeeeecc
Confidence 34445444 567899999999999999976 4666666665 89999999999999999999999999999
Q ss_pred CCCCcceEecCC--CCCCcceeEEECCCCCEEEEeeccccccCCCceEEEEeCCCCceEEEEecCCCC-CeEEEEEcCCC
Q 048012 376 KMKEPLKVFEDL--PNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREKLELVSRVGISPAC-SVVQCAWHPKL 452 (616)
Q Consensus 376 ~~~~~~~~~~~~--~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-~v~~~~~~p~~ 452 (616)
+.. ....+... ......+.+.|||++.|+++|+ .||.|+||++.++++...+..++.. .|++++|+|.|
T Consensus 372 t~e-I~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS-------~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG 443 (459)
T KOG0288|consen 372 TKE-IRQTFSAEGFKCASDWTRVVFSPDGSYVAAGS-------ADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSG 443 (459)
T ss_pred ccc-EEEEeeccccccccccceeEECCCCceeeecc-------CCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCC
Confidence 743 34444322 2334488999999999999999 8999999999999999998765543 69999999999
Q ss_pred CcEEEEeccCCCCceEEEe
Q 048012 453 NQIFATAGDKSQGGTHILY 471 (616)
Q Consensus 453 ~~l~~~~~d~~~~~~~~v~ 471 (616)
..|++++. +..+.+|
T Consensus 444 ~~Llsadk----~~~v~lW 458 (459)
T KOG0288|consen 444 SGLLSADK----QKAVTLW 458 (459)
T ss_pred chhhcccC----CcceEec
Confidence 98888876 6666666
No 43
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.98 E-value=3.5e-29 Score=230.72 Aligned_cols=290 Identities=19% Similarity=0.265 Sum_probs=235.5
Q ss_pred EEecCCcccEEEEEECCCCCEEEEEEcCCcEEEEeCCCCccccccceecCCCCCCceEEEEecCCCCeEEEEeC--CCeE
Q 048012 143 IVLKGHTKIVSALAVDHSGSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSDRFLCVTG--SAQA 220 (616)
Q Consensus 143 ~~l~~H~~~V~~v~~sp~g~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~s~--d~~v 220 (616)
..|..-...|++|.|+.+|.+|++++.|.+|+|||...+. .........+.|..++|......++.++. |.+|
T Consensus 8 k~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~-----~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tI 82 (311)
T KOG1446|consen 8 KVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGK-----QVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTI 82 (311)
T ss_pred cccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCc-----eeeEeecccccccEEEEecCCceEEEccCCCCCce
Confidence 3455567889999999999999999999999999988753 22223345667899999888888888877 8899
Q ss_pred EEEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEEEECCCccccceEEeeeccCCCCc
Q 048012 221 KIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPGRV 300 (616)
Q Consensus 221 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~ 300 (616)
+..++...+. ++.+.||...|+.++.+|-+ ..+++++.|++||+||++..+++..+...
T Consensus 83 ryLsl~dNky------------lRYF~GH~~~V~sL~~sP~~-d~FlS~S~D~tvrLWDlR~~~cqg~l~~~-------- 141 (311)
T KOG1446|consen 83 RYLSLHDNKY------------LRYFPGHKKRVNSLSVSPKD-DTFLSSSLDKTVRLWDLRVKKCQGLLNLS-------- 141 (311)
T ss_pred EEEEeecCce------------EEEcCCCCceEEEEEecCCC-CeEEecccCCeEEeeEecCCCCceEEecC--------
Confidence 9999887754 66689999999999999977 79999999999999999977776655332
Q ss_pred cEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCCCCCceeee---cCCCCCeEEEEEcCCCCeEEEEecCCcEEEEeCCCC
Q 048012 301 AVTTCAWDCDGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVE---KGHSDDITALKFSSDGRILLSRSFDGSLKVWDLRKM 377 (616)
Q Consensus 301 ~v~~~~~sp~g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~---~~h~~~V~~l~~spdg~~l~s~s~Dg~v~lwd~~~~ 377 (616)
.-..++|+|.|-++|++.....|+|||+++-. .-+...+ ..-....+.|.|||||++|+.+...+.+++.|.-.+
T Consensus 142 ~~pi~AfDp~GLifA~~~~~~~IkLyD~Rs~d--kgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G 219 (311)
T KOG1446|consen 142 GRPIAAFDPEGLIFALANGSELIKLYDLRSFD--KGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDG 219 (311)
T ss_pred CCcceeECCCCcEEEEecCCCeEEEEEecccC--CCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCC
Confidence 22467899999999999988899999999741 2222222 244667999999999999999999999999998875
Q ss_pred CCcceEecCCCCCC-cceeEEECCCCCEEEEeeccccccCCCceEEEEeCCCCceEEEEecCCCCCeEEEEEcCCCCcEE
Q 048012 378 KEPLKVFEDLPNNY-AQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREKLELVSRVGISPACSVVQCAWHPKLNQIF 456 (616)
Q Consensus 378 ~~~~~~~~~~~~~~-~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~ 456 (616)
. ....+...+... .....+|+||++++++|+ .||+|.+|+++++..+..+...+.+.+.++.|+|...+++
T Consensus 220 ~-~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs-------~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~ 291 (311)
T KOG1446|consen 220 T-VKSTFSGYPNAGNLPLSATFTPDSKFVLSGS-------DDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFV 291 (311)
T ss_pred c-EeeeEeeccCCCCcceeEEECCCCcEEEEec-------CCCcEEEEEcCCCcEeeEecCCCCCCccccccCCceeeee
Confidence 4 455665555443 235789999999999999 8999999999999999999876778999999999977777
Q ss_pred EEeccCCCCceEEEeccc
Q 048012 457 ATAGDKSQGGTHILYDPR 474 (616)
Q Consensus 457 ~~~~d~~~~~~~~v~~~~ 474 (616)
+++. .+.+|-+.
T Consensus 292 sa~s------~l~fw~p~ 303 (311)
T KOG1446|consen 292 SASS------NLVFWLPD 303 (311)
T ss_pred ecCc------eEEEEecc
Confidence 7765 57778665
No 44
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=7.2e-31 Score=244.98 Aligned_cols=248 Identities=24% Similarity=0.409 Sum_probs=214.8
Q ss_pred eEEecCCcccEEEEEECCCCCEEEEEEcCCcEEEEeCCCCccccccceecCCCCCCceEEEEecCCCCeEEEEeCCCeEE
Q 048012 142 EIVLKGHTKIVSALAVDHSGSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSDRFLCVTGSAQAK 221 (616)
Q Consensus 142 ~~~l~~H~~~V~~v~~sp~g~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~s~d~~v~ 221 (616)
+..|+||++.|..|+|+..|.+||+++.|-.+++||+... .++ ......|.+.|.++.|-|.|+++++++.|.+|+
T Consensus 143 e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~---~~c-~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik 218 (406)
T KOG0295|consen 143 ERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTF---FRC-IKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIK 218 (406)
T ss_pred hhhhhccccceeEEEEecCccEEEecCCccchhheeHHHH---HHH-HHHhcCcccceeeEEEEecCCeeeeccccccee
Confidence 5578999999999999999999999999999999998752 222 233456888899999999999999999999999
Q ss_pred EEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEEEECCCccccceEEeeeccCCCCcc
Q 048012 222 IYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPGRVA 301 (616)
Q Consensus 222 vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~ 301 (616)
.|+++++- .+.++.+|..-|..+..+.|| .++++|+.|.+|++|-+.++.+...+ +.|..+
T Consensus 219 ~We~~tg~------------cv~t~~~h~ewvr~v~v~~DG-ti~As~s~dqtl~vW~~~t~~~k~~l------R~hEh~ 279 (406)
T KOG0295|consen 219 AWECDTGY------------CVKTFPGHSEWVRMVRVNQDG-TIIASCSNDQTLRVWVVATKQCKAEL------REHEHP 279 (406)
T ss_pred EEecccce------------eEEeccCchHhEEEEEecCCe-eEEEecCCCceEEEEEeccchhhhhh------hccccc
Confidence 99999774 366688999999999999988 69999999999999999887554433 234447
Q ss_pred EEEEEECCC---------------CCeEEEEeCCCcEEEEeCCCCCCCCCceeeecCCCCCeEEEEEcCCCCeEEEEecC
Q 048012 302 VTTCAWDCD---------------GKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHSDDITALKFSSDGRILLSRSFD 366 (616)
Q Consensus 302 v~~~~~sp~---------------g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~D 366 (616)
|-|++|-|. +.++++++.|++|++||+.++ .++.++.+|..+|..++|+|.|+||+++..|
T Consensus 280 vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg----~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDD 355 (406)
T KOG0295|consen 280 VECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTG----MCLFTLVGHDNWVRGVAFSPGGKYILSCADD 355 (406)
T ss_pred eEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCC----eEEEEEecccceeeeeEEcCCCeEEEEEecC
Confidence 889988663 358999999999999999988 7899999999999999999999999999999
Q ss_pred CcEEEEeCCCCCCcceEecCCCCCCcceeEEECCCCCEEEEeeccccccCCCceEEEEeC
Q 048012 367 GSLKVWDLRKMKEPLKVFEDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDR 426 (616)
Q Consensus 367 g~v~lwd~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~ 426 (616)
++|++||+++ .++++.+..+++ .++++.|+.+..++++|+ -|..+++|..
T Consensus 356 ktlrvwdl~~-~~cmk~~~ah~h--fvt~lDfh~~~p~VvTGs-------Vdqt~KvwEc 405 (406)
T KOG0295|consen 356 KTLRVWDLKN-LQCMKTLEAHEH--FVTSLDFHKTAPYVVTGS-------VDQTVKVWEC 405 (406)
T ss_pred CcEEEEEecc-ceeeeccCCCcc--eeEEEecCCCCceEEecc-------ccceeeeeec
Confidence 9999999996 456777766554 499999999999999999 8999999974
No 45
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.97 E-value=2.3e-30 Score=240.74 Aligned_cols=260 Identities=16% Similarity=0.263 Sum_probs=217.9
Q ss_pred ecCCCCCCceEEEEecCCCCeEEEEeCCCeEEEEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEE
Q 048012 190 QLEPSEGHQVRNLSWSPTSDRFLCVTGSAQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTS 269 (616)
Q Consensus 190 ~~~~~~~~~v~~l~~sp~g~~l~~~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~ 269 (616)
.+...|.+.|.|+++.|-..+|++++.|++++|||+.++.+. .++.||...|..+++++.. .+++++
T Consensus 145 rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~Lk------------ltltGhi~~vr~vavS~rH-pYlFs~ 211 (460)
T KOG0285|consen 145 RVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLK------------LTLTGHIETVRGVAVSKRH-PYLFSA 211 (460)
T ss_pred hhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEE------------EeecchhheeeeeeecccC-ceEEEe
Confidence 344568889999999999999999999999999999998863 3478999999999999977 499999
Q ss_pred eCCCCEEEEECCCccccceEEeeeccCCCCccEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCCCCCceeeecCCCCCeE
Q 048012 270 SEDGSLRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWDCDGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHSDDIT 349 (616)
Q Consensus 270 s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~ 349 (616)
+.|+.|+.||+...+.+..+ ++|-..|.|++.+|.-..|++|+.|.++++||+++. ..+..+.+|..+|.
T Consensus 212 gedk~VKCwDLe~nkvIR~Y------hGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr----~~V~~l~GH~~~V~ 281 (460)
T KOG0285|consen 212 GEDKQVKCWDLEYNKVIRHY------HGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTR----ASVHVLSGHTNPVA 281 (460)
T ss_pred cCCCeeEEEechhhhhHHHh------ccccceeEEEeccccceeEEecCCcceEEEeeeccc----ceEEEecCCCCcce
Confidence 99999999999876655544 466678999999999999999999999999999965 78899999999999
Q ss_pred EEEEcCCCCeEEEEecCCcEEEEeCCCCCCcceEecCCCCCCcceeEEECCCCCEEEEeeccccccCCCceEEEEeCCCC
Q 048012 350 ALKFSSDGRILLSRSFDGSLKVWDLRKMKEPLKVFEDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREKL 429 (616)
Q Consensus 350 ~l~~spdg~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~~ 429 (616)
+|.+.|-...+++|+.|++|++||++.++. ...+.. +...|.+++.+|....+++++ -..|+-|++..+
T Consensus 282 ~V~~~~~dpqvit~S~D~tvrlWDl~agkt-~~tlt~--hkksvral~lhP~e~~fASas--------~dnik~w~~p~g 350 (460)
T KOG0285|consen 282 SVMCQPTDPQVITGSHDSTVRLWDLRAGKT-MITLTH--HKKSVRALCLHPKENLFASAS--------PDNIKQWKLPEG 350 (460)
T ss_pred eEEeecCCCceEEecCCceEEEeeeccCce-eEeeec--ccceeeEEecCCchhhhhccC--------CccceeccCCcc
Confidence 999999888999999999999999998665 333333 445599999999999999987 456999999999
Q ss_pred ceEEEEecCCCCCeEEEEEcCCCCcEEEEeccCCCCceEEEecccCCCCCcEEEEecCCc
Q 048012 430 ELVSRVGISPACSVVQCAWHPKLNQIFATAGDKSQGGTHILYDPRLSERGALVCVARAPR 489 (616)
Q Consensus 430 ~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~~~~~~~v~~~~~s~~g~~l~s~~~d~ 489 (616)
..+..+.. |..-|+++..+.+ ..+++|+. .+.+.+|+..-.++=+.+.+.-.+|
T Consensus 351 ~f~~nlsg-h~~iintl~~nsD-~v~~~G~d----ng~~~fwdwksg~nyQ~~~t~vqpG 404 (460)
T KOG0285|consen 351 EFLQNLSG-HNAIINTLSVNSD-GVLVSGGD----NGSIMFWDWKSGHNYQRGQTIVQPG 404 (460)
T ss_pred chhhcccc-ccceeeeeeeccC-ceEEEcCC----ceEEEEEecCcCcccccccccccCC
Confidence 99888653 6677888888877 56676665 7889999987666555554433333
No 46
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.97 E-value=4.2e-31 Score=244.56 Aligned_cols=282 Identities=18% Similarity=0.288 Sum_probs=219.6
Q ss_pred CcccEEEEEECCCCCEEEEEEcCCcEEEEeCCCCccccccceecCCCCCCceEEEEecCCCCeEEEEeCCCeEEEEECCC
Q 048012 148 HTKIVSALAVDHSGSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSDRFLCVTGSAQAKIYDRDG 227 (616)
Q Consensus 148 H~~~V~~v~~sp~g~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~s~d~~v~vwd~~~ 227 (616)
..+.|+|+.++ ...+++|..|.+|+|||.++. ....+..+|.+.|.|+.|.. +.|++|+.|.+|+|||+++
T Consensus 196 ~skgVYClQYD--D~kiVSGlrDnTikiWD~n~~-----~c~~~L~GHtGSVLCLqyd~--rviisGSSDsTvrvWDv~t 266 (499)
T KOG0281|consen 196 NSKGVYCLQYD--DEKIVSGLRDNTIKIWDKNSL-----ECLKILTGHTGSVLCLQYDE--RVIVSGSSDSTVRVWDVNT 266 (499)
T ss_pred cCCceEEEEec--chhhhcccccCceEEeccccH-----HHHHhhhcCCCcEEeeeccc--eEEEecCCCceEEEEeccC
Confidence 46789999985 458999999999999998763 33345567888999999954 5899999999999999998
Q ss_pred CeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEEEECCCccccceEEeeeccCCCCccEEEEEE
Q 048012 228 LTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAW 307 (616)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 307 (616)
++. ++++.+|...|..+.|+. .++++++.|.+|++||+...... .......+|+..|+.+.|
T Consensus 267 ge~------------l~tlihHceaVLhlrf~n---g~mvtcSkDrsiaVWdm~sps~i---t~rrVLvGHrAaVNvVdf 328 (499)
T KOG0281|consen 267 GEP------------LNTLIHHCEAVLHLRFSN---GYMVTCSKDRSIAVWDMASPTDI---TLRRVLVGHRAAVNVVDF 328 (499)
T ss_pred Cch------------hhHHhhhcceeEEEEEeC---CEEEEecCCceeEEEeccCchHH---HHHHHHhhhhhheeeecc
Confidence 864 677889999999999985 49999999999999999865422 111223478889999998
Q ss_pred CCCCCeEEEEeCCCcEEEEeCCCCCCCCCceeeecCCCCCeEEEEEcCCCCeEEEEecCCcEEEEeCCCCCCcceEecCC
Q 048012 308 DCDGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHSDDITALKFSSDGRILLSRSFDGSLKVWDLRKMKEPLKVFEDL 387 (616)
Q Consensus 308 sp~g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~ 387 (616)
+ .++|++++.|.+|++|++.++ ..+.++.+|...|.|+.+. |+++++|+.|.+|+|||+.. +.+++++++|
T Consensus 329 d--~kyIVsASgDRTikvW~~st~----efvRtl~gHkRGIAClQYr--~rlvVSGSSDntIRlwdi~~-G~cLRvLeGH 399 (499)
T KOG0281|consen 329 D--DKYIVSASGDRTIKVWSTSTC----EFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIEC-GACLRVLEGH 399 (499)
T ss_pred c--cceEEEecCCceEEEEeccce----eeehhhhcccccceehhcc--CeEEEecCCCceEEEEeccc-cHHHHHHhch
Confidence 6 469999999999999999987 7889999999999999875 89999999999999999996 5678888886
Q ss_pred CCCCcceeEEECCCCCEEEEeeccccccCCCceEEEEeCCCCceEEEEecCCCCCeEEEEEcCCCCcEEEEeccCCCCce
Q 048012 388 PNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREKLELVSRVGISPACSVVQCAWHPKLNQIFATAGDKSQGGT 467 (616)
Q Consensus 388 ~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~~~~~ 467 (616)
..- |.++.| |.+.|++|. .||+|+|||+..+.-.+... ..++. ..- ..|+
T Consensus 400 EeL--vRciRF--d~krIVSGa-------YDGkikvWdl~aaldpra~~-------~~~Cl--------~~l----v~hs 449 (499)
T KOG0281|consen 400 EEL--VRCIRF--DNKRIVSGA-------YDGKIKVWDLQAALDPRAPA-------STLCL--------RTL----VEHS 449 (499)
T ss_pred HHh--hhheee--cCceeeecc-------ccceEEEEecccccCCcccc-------cchHH--------Hhh----hhcc
Confidence 654 999999 568899999 89999999998775432211 00000 000 1344
Q ss_pred EEEecccCCCCCcEEEEecCCcceeccccc
Q 048012 468 HILYDPRLSERGALVCVARAPRKKSVDDFE 497 (616)
Q Consensus 468 ~~v~~~~~s~~g~~l~s~~~d~~~~~wd~~ 497 (616)
.+|+.+.| |...+++++.|.+|-|||+.
T Consensus 450 gRVFrLQF--D~fqIvsssHddtILiWdFl 477 (499)
T KOG0281|consen 450 GRVFRLQF--DEFQIISSSHDDTILIWDFL 477 (499)
T ss_pred ceeEEEee--cceEEEeccCCCeEEEEEcC
Confidence 45555555 44555566666666666664
No 47
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.97 E-value=7e-30 Score=258.21 Aligned_cols=294 Identities=20% Similarity=0.314 Sum_probs=237.1
Q ss_pred ceEEecCCcccEEEEEECCCCCEEEEEEcCCcEEEEeCCCCccccccceecCCCCCCceEEEEecCCCCeEEEEeCCCeE
Q 048012 141 NEIVLKGHTKIVSALAVDHSGSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSDRFLCVTGSAQA 220 (616)
Q Consensus 141 ~~~~l~~H~~~V~~v~~sp~g~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~s~d~~v 220 (616)
..+.+.||...|.+++|+.+...+++|+ .+.|+||+..++. +++.+ ....+.+..|-|.++++++|..+|.+
T Consensus 365 ~~i~~~GHR~dVRsl~vS~d~~~~~Sga-~~SikiWn~~t~k----ciRTi---~~~y~l~~~Fvpgd~~Iv~G~k~Gel 436 (888)
T KOG0306|consen 365 SNIEIGGHRSDVRSLCVSSDSILLASGA-GESIKIWNRDTLK----CIRTI---TCGYILASKFVPGDRYIVLGTKNGEL 436 (888)
T ss_pred ceeeeccchhheeEEEeecCceeeeecC-CCcEEEEEccCcc----eeEEe---ccccEEEEEecCCCceEEEeccCCce
Confidence 4578899999999999999887887775 5689999987642 33333 33469999999999999999999999
Q ss_pred EEEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEEEECCCccc----cceEEeee--c
Q 048012 221 KIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKS----QKQVIKPK--L 294 (616)
Q Consensus 221 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~----~~~~~~~~--~ 294 (616)
.|||+....+ +.....|.+.|+.++..|++. .+++||.|.+|++||..-... ...++... .
T Consensus 437 ~vfdlaS~~l------------~Eti~AHdgaIWsi~~~pD~~-g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~r 503 (888)
T KOG0306|consen 437 QVFDLASASL------------VETIRAHDGAIWSISLSPDNK-GFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTR 503 (888)
T ss_pred EEEEeehhhh------------hhhhhccccceeeeeecCCCC-ceEEecCCcEEEEEeEEEEeccCcccceeeeeccce
Confidence 9999987765 334679999999999999884 899999999999999742111 11111100 1
Q ss_pred cCCCCccEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCCCCCceeeecCCCCCeEEEEEcCCCCeEEEEecCCcEEEEeC
Q 048012 295 ARPGRVAVTTCAWDCDGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHSDDITALKFSSDGRILLSRSFDGSLKVWDL 374 (616)
Q Consensus 295 ~~~~~~~v~~~~~sp~g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~v~lwd~ 374 (616)
...-...|.|+.+||||++|+++--|.+|++|-+.+. +....+.+|.-+|.|+..|||+++++|||.|.+|+||-+
T Consensus 504 tLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtl----KFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGL 579 (888)
T KOG0306|consen 504 TLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTL----KFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGL 579 (888)
T ss_pred EEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecce----eeeeeecccccceeEEeccCCcCeEEeccCCCceEEecc
Confidence 1112236999999999999999999999999999875 678889999999999999999999999999999999998
Q ss_pred CCCCCcceEecCCCCCCcceeEEECCCCCEEEEeeccccccCCCceEEEEeCCCCceEEEEecCCCCCeEEEEEcCCCCc
Q 048012 375 RKMKEPLKVFEDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREKLELVSRVGISPACSVVQCAWHPKLNQ 454 (616)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~ 454 (616)
. ++.+.+.+-.| ...|.++.|-|...++++++ .|+.|+-||-..+++++.+.
T Consensus 580 d-FGDCHKS~fAH--dDSvm~V~F~P~~~~FFt~g-------KD~kvKqWDg~kFe~iq~L~------------------ 631 (888)
T KOG0306|consen 580 D-FGDCHKSFFAH--DDSVMSVQFLPKTHLFFTCG-------KDGKVKQWDGEKFEEIQKLD------------------ 631 (888)
T ss_pred c-cchhhhhhhcc--cCceeEEEEcccceeEEEec-------CcceEEeechhhhhhheeec------------------
Confidence 7 56666666554 45599999999999999999 99999999999999998885
Q ss_pred EEEEeccCCCCceEEEecccCCCCCcEEEEecCCcceeccccc
Q 048012 455 IFATAGDKSQGGTHILYDPRLSERGALVCVARAPRKKSVDDFE 497 (616)
Q Consensus 455 l~~~~~d~~~~~~~~v~~~~~s~~g~~l~s~~~d~~~~~wd~~ 497 (616)
+|...+|.++.+|+|.++++++.|..+++|+..
T Consensus 632 ----------~H~~ev~cLav~~~G~~vvs~shD~sIRlwE~t 664 (888)
T KOG0306|consen 632 ----------GHHSEVWCLAVSPNGSFVVSSSHDKSIRLWERT 664 (888)
T ss_pred ----------cchheeeeeEEcCCCCeEEeccCCceeEeeecc
Confidence 444556666666667777777777777777653
No 48
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=8.7e-29 Score=222.57 Aligned_cols=276 Identities=14% Similarity=0.233 Sum_probs=213.6
Q ss_pred CCCCCCceEEEEecCC-CCeEEEEeCCCeEEEEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEe
Q 048012 192 EPSEGHQVRNLSWSPT-SDRFLCVTGSAQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSS 270 (616)
Q Consensus 192 ~~~~~~~v~~l~~sp~-g~~l~~~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s 270 (616)
...|...+..++|+|- |..|++++.|..|+||+..+..-..+ +.. .-.+|...|..++|+|.+ ++|+++|
T Consensus 10 ~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~c-------k~v-ld~~hkrsVRsvAwsp~g-~~La~aS 80 (312)
T KOG0645|consen 10 LSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTC-------KTV-LDDGHKRSVRSVAWSPHG-RYLASAS 80 (312)
T ss_pred ecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEE-------EEe-ccccchheeeeeeecCCC-cEEEEee
Confidence 3456668999999998 88999999999999999884221111 111 124899999999999988 5999999
Q ss_pred CCCCEEEEECCCccccceEEeeeccCCCCccEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCCCCCceeeecCCCCCeEE
Q 048012 271 EDGSLRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWDCDGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHSDDITA 350 (616)
Q Consensus 271 ~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~ 350 (616)
.|.++.||.-..+. +.......+|...|.|++|+++|++||+++.|.+|.||.+..+. ...+...+..|...|..
T Consensus 81 FD~t~~Iw~k~~~e----fecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~dedd-Efec~aVL~~HtqDVK~ 155 (312)
T KOG0645|consen 81 FDATVVIWKKEDGE----FECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDD-EFECIAVLQEHTQDVKH 155 (312)
T ss_pred ccceEEEeecCCCc----eeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCC-cEEEEeeeccccccccE
Confidence 99999999865432 11122235777799999999999999999999999999988442 55778899999999999
Q ss_pred EEEcCCCCeEEEEecCCcEEEEeCCCCC--CcceEecCCCCCCcceeEEECCCCCEEEEeeccccccCCCceEEEEeCCC
Q 048012 351 LKFSSDGRILLSRSFDGSLKVWDLRKMK--EPLKVFEDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREK 428 (616)
Q Consensus 351 l~~spdg~~l~s~s~Dg~v~lwd~~~~~--~~~~~~~~~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~ 428 (616)
+.|+|...+|+++|+|++|++|+-.... .+++.+..+.. .|.+++|++.|..|++++ .|++|+||-..+
T Consensus 156 V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~--TVW~~~F~~~G~rl~s~s-------dD~tv~Iw~~~~ 226 (312)
T KOG0645|consen 156 VIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHEN--TVWSLAFDNIGSRLVSCS-------DDGTVSIWRLYT 226 (312)
T ss_pred EEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccc--eEEEEEecCCCceEEEec-------CCcceEeeeecc
Confidence 9999999999999999999999876322 35666666544 599999999999999999 999999999652
Q ss_pred CceEEEEecCCCCCeEEEEEcCCCCcEEEEeccC----------------------CCCceEEEecccCCCC-CcEEEEe
Q 048012 429 LELVSRVGISPACSVVQCAWHPKLNQIFATAGDK----------------------SQGGTHILYDPRLSER-GALVCVA 485 (616)
Q Consensus 429 ~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~----------------------~~~~~~~v~~~~~s~~-g~~l~s~ 485 (616)
.+..-|...+..+.|. ...|+++++|. -..|..-|..+.+.|. ...|+++
T Consensus 227 -----~~~~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~ 299 (312)
T KOG0645|consen 227 -----DLSGMHSRALYDVPWD--NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASG 299 (312)
T ss_pred -----CcchhcccceEeeeec--ccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeec
Confidence 2333355778999999 46788888854 0112223333555563 5677888
Q ss_pred cCCcceeccccc
Q 048012 486 RAPRKKSVDDFE 497 (616)
Q Consensus 486 ~~d~~~~~wd~~ 497 (616)
+.||.+++|.+.
T Consensus 300 ~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 300 GDDGIVNFWELE 311 (312)
T ss_pred CCCceEEEEEec
Confidence 888888888763
No 49
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.97 E-value=4.4e-30 Score=235.69 Aligned_cols=301 Identities=17% Similarity=0.245 Sum_probs=240.5
Q ss_pred cCCCCCcceEEecCCcccEEEEEECCCCCEEEEEEcCCcEEEEeCCCCcccccc---ceecCCCCCCceEEEEecCCCCe
Q 048012 134 RHQIPMSNEIVLKGHTKIVSALAVDHSGSRVLSGSYDYTVRMYDFQGMNSRLQS---FRQLEPSEGHQVRNLSWSPTSDR 210 (616)
Q Consensus 134 ~~~~p~~~~~~l~~H~~~V~~v~~sp~g~~lasgs~Dg~i~iwd~~~~~~~~~~---~~~~~~~~~~~v~~l~~sp~g~~ 210 (616)
.++..+.+.+.| +....+-|..|+|||++|++|+.||.|.+||+.++.-.... .......+...|.|++||.|...
T Consensus 199 ~~Pt~l~r~IKF-g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEM 277 (508)
T KOG0275|consen 199 RYPTQLARSIKF-GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEM 277 (508)
T ss_pred hchHHhhhheec-ccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHH
Confidence 333334444444 56777899999999999999999999999999875422111 11112235667999999999999
Q ss_pred EEEEeCCCeEEEEECCCCeeeeEeeCceeEeecccC-CCcccceEEEEEcCCCCCEEEEEeCCCCEEEEECCCccccceE
Q 048012 211 FLCVTGSAQAKIYDRDGLTLGEFVKGDMYIRDLKNT-KGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQV 289 (616)
Q Consensus 211 l~~~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~~~ 289 (616)
|++|+.||.|+||.+.++.. ++.+ +.|+..|+|+.|+.++. .+++++.|.++||.-+..+++.+.+
T Consensus 278 lAsGsqDGkIKvWri~tG~C------------lRrFdrAHtkGvt~l~FSrD~S-qiLS~sfD~tvRiHGlKSGK~LKEf 344 (508)
T KOG0275|consen 278 LASGSQDGKIKVWRIETGQC------------LRRFDRAHTKGVTCLSFSRDNS-QILSASFDQTVRIHGLKSGKCLKEF 344 (508)
T ss_pred hhccCcCCcEEEEEEecchH------------HHHhhhhhccCeeEEEEccCcc-hhhcccccceEEEeccccchhHHHh
Confidence 99999999999999886653 3333 58999999999999884 7999999999999999999888776
Q ss_pred EeeeccCCCCccEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCCCCCceeeecC--CCCCeEEEEEcC-CCCeEEEEecC
Q 048012 290 IKPKLARPGRVAVTTCAWDCDGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKG--HSDDITALKFSS-DGRILLSRSFD 366 (616)
Q Consensus 290 ~~~~~~~~~~~~v~~~~~sp~g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~--h~~~V~~l~~sp-dg~~l~s~s~D 366 (616)
++|...|+...|.++|..+++++.||+|++|+..+. .++.+++. ..-+|.++..-| +...+++|...
T Consensus 345 ------rGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~Ktt----eC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrs 414 (508)
T KOG0275|consen 345 ------RGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTT----ECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRS 414 (508)
T ss_pred ------cCccccccceEEcCCCCeEEEecCCccEEEecCcch----hhhhhccCCCCcccceeEEEcCCCCceEEEEcCC
Confidence 467778999999999999999999999999999976 45555543 345688888777 55788999999
Q ss_pred CcEEEEeCCCCCCcceEecC-CCCCCcceeEEECCCCCEEEEeeccccccCCCceEEEEeCCCCceEEEEecCCCCCeEE
Q 048012 367 GSLKVWDLRKMKEPLKVFED-LPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREKLELVSRVGISPACSVVQ 445 (616)
Q Consensus 367 g~v~lwd~~~~~~~~~~~~~-~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~ 445 (616)
++|.|.++.. ..++.+.. ....+...++++||.|.++.+.+ .|+.++.|.+.+|++-+++.+ |...|+.
T Consensus 415 ntv~imn~qG--QvVrsfsSGkREgGdFi~~~lSpkGewiYcig-------ED~vlYCF~~~sG~LE~tl~V-hEkdvIG 484 (508)
T KOG0275|consen 415 NTVYIMNMQG--QVVRSFSSGKREGGDFINAILSPKGEWIYCIG-------EDGVLYCFSVLSGKLERTLPV-HEKDVIG 484 (508)
T ss_pred CeEEEEeccc--eEEeeeccCCccCCceEEEEecCCCcEEEEEc-------cCcEEEEEEeecCceeeeeec-ccccccc
Confidence 9999999873 44555433 33445677889999999999999 999999999999999999987 6667999
Q ss_pred EEEcCCCCcEEEEeccCCCCceEEEec
Q 048012 446 CAWHPKLNQIFATAGDKSQGGTHILYD 472 (616)
Q Consensus 446 ~~~~p~~~~l~~~~~d~~~~~~~~v~~ 472 (616)
++-||..+.|++-+. ++...+|.
T Consensus 485 l~HHPHqNllAsYsE----DgllKLWk 507 (508)
T KOG0275|consen 485 LTHHPHQNLLASYSE----DGLLKLWK 507 (508)
T ss_pred cccCcccchhhhhcc----cchhhhcC
Confidence 999999888877776 56667764
No 50
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.97 E-value=9.3e-29 Score=225.49 Aligned_cols=277 Identities=18% Similarity=0.285 Sum_probs=220.5
Q ss_pred cccceecCCCCCCceEEEEecCCCCeEEEEeCCCeEEEEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCC
Q 048012 185 LQSFRQLEPSEGHQVRNLSWSPTSDRFLCVTGSAQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKE 264 (616)
Q Consensus 185 ~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~ 264 (616)
+..+....++|.+.|+.+.|+|+|..|++++.|..|.+|++.+.+- ....+++|.+.|..+.|.+++ +
T Consensus 36 l~ap~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdce-----------N~~~lkgHsgAVM~l~~~~d~-s 103 (338)
T KOG0265|consen 36 LQAPIMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCE-----------NFWVLKGHSGAVMELHGMRDG-S 103 (338)
T ss_pred ccchhhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEecccccc-----------ceeeeccccceeEeeeeccCC-C
Confidence 4455666778899999999999999999999999999999887652 234467999999999999987 6
Q ss_pred EEEEEeCCCCEEEEECCCccccceEEeeeccCCCCccEEEEEECCCC-CeEEEEeCCCcEEEEeCCCCCCCCCceeeecC
Q 048012 265 TILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWDCDG-KCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKG 343 (616)
Q Consensus 265 ~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g-~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~ 343 (616)
.|++++.|.+|+.||++++++..... .|..-|+++.-+.-| .++.+|+.||+++|||+++. ..+..+.
T Consensus 104 ~i~S~gtDk~v~~wD~~tG~~~rk~k------~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k----~~~~t~~- 172 (338)
T KOG0265|consen 104 HILSCGTDKTVRGWDAETGKRIRKHK------GHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKK----EAIKTFE- 172 (338)
T ss_pred EEEEecCCceEEEEecccceeeehhc------cccceeeecCccccCCeEEEecCCCceEEEEeeccc----chhhccc-
Confidence 99999999999999999988766543 444467777744444 46778899999999999964 3444332
Q ss_pred CCCCeEEEEEcCCCCeEEEEecCCcEEEEeCCCCCCcceEecCCCCCCcceeEEECCCCCEEEEeeccccccCCCceEEE
Q 048012 344 HSDDITALKFSSDGRILLSRSFDGSLKVWDLRKMKEPLKVFEDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCF 423 (616)
Q Consensus 344 h~~~V~~l~~spdg~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~i 423 (616)
....++++.|..++..+++|+-|+.|++||++.. ..+.++.++. ..|+.+..+++|.++++-+ .|.+|++
T Consensus 173 ~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~-d~~~~lsGh~--DtIt~lsls~~gs~llsns-------Md~tvrv 242 (338)
T KOG0265|consen 173 NKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKN-DGLYTLSGHA--DTITGLSLSRYGSFLLSNS-------MDNTVRV 242 (338)
T ss_pred cceeEEEEEecccccceeeccccCceeeeccccC-cceEEeeccc--CceeeEEeccCCCcccccc-------ccceEEE
Confidence 3457999999999999999999999999999864 4566666644 5599999999999999998 9999999
Q ss_pred EeCCCC----ceEEEEecC-C--CCCeEEEEEcCCCCcEEEEeccC---------------CCCceEEEecccCCCCCcE
Q 048012 424 YDREKL----ELVSRVGIS-P--ACSVVQCAWHPKLNQIFATAGDK---------------SQGGTHILYDPRLSERGAL 481 (616)
Q Consensus 424 wd~~~~----~~~~~~~~~-~--~~~v~~~~~~p~~~~l~~~~~d~---------------~~~~~~~v~~~~~s~~g~~ 481 (616)
||++-. .++..+... | .-....|+|+|++..+-+++.|+ +.||...|-.++|.|....
T Consensus 243 wd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp~e~i 322 (338)
T KOG0265|consen 243 WDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHPTEPI 322 (338)
T ss_pred EEecccCCCCceEEEeecchhhhhhhcceeeccCCCCccccccccceEEEeecccccEEEEcCCcceeEEEeeecCCCcE
Confidence 998754 334444321 1 13467899999999999999866 3466666666888888888
Q ss_pred EEEecCCcceecc
Q 048012 482 VCVARAPRKKSVD 494 (616)
Q Consensus 482 l~s~~~d~~~~~w 494 (616)
|.+++.|+++.+=
T Consensus 323 ils~~sdk~i~lg 335 (338)
T KOG0265|consen 323 ILSCSSDKTIYLG 335 (338)
T ss_pred EEEeccCceeEee
Confidence 8888888887653
No 51
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=4.2e-29 Score=222.46 Aligned_cols=285 Identities=18% Similarity=0.349 Sum_probs=217.8
Q ss_pred EEEEECCC-CCEEEEEE-------cCCcEEEEeCCCCccccccceecCCCCCCceEEEEecCCC-CeEEEEeCCCeEEEE
Q 048012 153 SALAVDHS-GSRVLSGS-------YDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTS-DRFLCVTGSAQAKIY 223 (616)
Q Consensus 153 ~~v~~sp~-g~~lasgs-------~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g-~~l~~~s~d~~v~vw 223 (616)
.++.|||- .++||.+. ..|++.|-++... ..+..+.... -...+..++|++.. +.++++++||.++||
T Consensus 12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~-~gi~e~~s~d--~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~ 88 (311)
T KOG0277|consen 12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDP-KGIQECQSYD--TEDGLFDVAWSENHENQVIAASGDGSLRLF 88 (311)
T ss_pred ceeEecccccchhheeehhhcccccCceEEEEecCCC-CCeEEEEeee--cccceeEeeecCCCcceEEEEecCceEEEe
Confidence 57789983 23444332 2578888888632 2222222222 23458999999974 568889999999999
Q ss_pred ECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEEEECCCccccceEEeeeccCCCCccEE
Q 048012 224 DRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPGRVAVT 303 (616)
Q Consensus 224 d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~ 303 (616)
|..... .++..++.|...|.++.|++.....++++|.|++|+||+......+.++ .+|...|.
T Consensus 89 d~~~~s-----------~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf------~gh~~~Iy 151 (311)
T KOG0277|consen 89 DLTMPS-----------KPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTF------NGHNSCIY 151 (311)
T ss_pred ccCCCC-----------cchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEee------cCCccEEE
Confidence 955332 3577789999999999999988889999999999999999876665553 35777899
Q ss_pred EEEECC-CCCeEEEEeCCCcEEEEeCCCCCCCCCceeeecCCCCCeEEEEEcC-CCCeEEEEecCCcEEEEeCCCCCCcc
Q 048012 304 TCAWDC-DGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHSDDITALKFSS-DGRILLSRSFDGSLKVWDLRKMKEPL 381 (616)
Q Consensus 304 ~~~~sp-~g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp-dg~~l~s~s~Dg~v~lwd~~~~~~~~ 381 (616)
..+|+| .++++++++.||+++|||++.. -....+.+|...|.|+.|+. +.++|+||+.|+.|++||+++.+.++
T Consensus 152 ~a~~sp~~~nlfas~Sgd~~l~lwdvr~~----gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl 227 (311)
T KOG0277|consen 152 QAAFSPHIPNLFASASGDGTLRLWDVRSP----GKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPL 227 (311)
T ss_pred EEecCCCCCCeEEEccCCceEEEEEecCC----CceeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhccccc
Confidence 999999 5789999999999999999875 23344889999999999998 77899999999999999999999888
Q ss_pred eEecCCCCCCcceeEEECCCC-CEEEEeeccccccCCCceEEEEeCCCCc-eEEEEecCCCCCeEEEEEcCCCC-cEEEE
Q 048012 382 KVFEDLPNNYAQTNVAFSPDE-QLFLTGTSVERESTTGGLLCFYDREKLE-LVSRVGISPACSVVQCAWHPKLN-QIFAT 458 (616)
Q Consensus 382 ~~~~~~~~~~~v~~v~fspdg-~~l~~gs~~~~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~~v~~~~~~p~~~-~l~~~ 458 (616)
..+.+ +...|+.+.|||.. .+|++++ .|-+++|||..... ++.++. .|..-|..+.|++-.. +++.+
T Consensus 228 ~eL~g--h~~AVRkvk~Sph~~~lLaSas-------YDmT~riw~~~~~ds~~e~~~-~HtEFv~g~Dws~~~~~~vAs~ 297 (311)
T KOG0277|consen 228 FELNG--HGLAVRKVKFSPHHASLLASAS-------YDMTVRIWDPERQDSAIETVD-HHTEFVCGLDWSLFDPGQVAST 297 (311)
T ss_pred eeecC--CceEEEEEecCcchhhHhhhcc-------ccceEEecccccchhhhhhhh-ccceEEeccccccccCceeeec
Confidence 88755 66779999999975 5677777 89999999988554 334443 3556677788887543 44444
Q ss_pred eccCCCCceEEEecccC
Q 048012 459 AGDKSQGGTHILYDPRL 475 (616)
Q Consensus 459 ~~d~~~~~~~~v~~~~~ 475 (616)
+. +..+.||++.+
T Consensus 298 gW----De~l~Vw~p~l 310 (311)
T KOG0277|consen 298 GW----DELLYVWNPGL 310 (311)
T ss_pred cc----ccceeeecccC
Confidence 44 67777777643
No 52
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.97 E-value=1.2e-28 Score=249.42 Aligned_cols=241 Identities=17% Similarity=0.232 Sum_probs=193.1
Q ss_pred CCcccceEEEEEcCCCCCEEEEEeCCCCEEEEECCCccccceEEeeeccCCCCccEEEEEECCCCCeEEEEeCCCcEEEE
Q 048012 247 KGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWDCDGKCIAGGIGDGSIQVW 326 (616)
Q Consensus 247 ~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~g~~dg~I~iw 326 (616)
.||...|..++++.+. .++..+..+.|+||+..+.+++.++... .+.+..|-|.++++++|...|.+.+|
T Consensus 370 ~GHR~dVRsl~vS~d~--~~~~Sga~~SikiWn~~t~kciRTi~~~--------y~l~~~Fvpgd~~Iv~G~k~Gel~vf 439 (888)
T KOG0306|consen 370 GGHRSDVRSLCVSSDS--ILLASGAGESIKIWNRDTLKCIRTITCG--------YILASKFVPGDRYIVLGTKNGELQVF 439 (888)
T ss_pred ccchhheeEEEeecCc--eeeeecCCCcEEEEEccCcceeEEeccc--------cEEEEEecCCCceEEEeccCCceEEE
Confidence 4677788889998764 4444455688999999988887766432 67899999999999999999999999
Q ss_pred eCCCCCCCCCceeeecCCCCCeEEEEEcCCCCeEEEEecCCcEEEEeCCCCCC----cceEe-----cCCCCCCcceeEE
Q 048012 327 NLKPGWGSRPDIHVEKGHSDDITALKFSSDGRILLSRSFDGSLKVWDLRKMKE----PLKVF-----EDLPNNYAQTNVA 397 (616)
Q Consensus 327 d~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~v~lwd~~~~~~----~~~~~-----~~~~~~~~v~~v~ 397 (616)
|+.+. ..+....+|.+.|++|+.+||+..++++|.|.+|++||+.-... ..+.+ ..+.-...|.|+.
T Consensus 440 dlaS~----~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~ 515 (888)
T KOG0306|consen 440 DLASA----SLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVS 515 (888)
T ss_pred Eeehh----hhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEE
Confidence 99976 67788889999999999999999999999999999999752111 00111 1112234599999
Q ss_pred ECCCCCEEEEeeccccccCCCceEEEEeCCCCceEEEEecCCCCCeEEEEEcCCCCcEEEEeccCCCCceEEEeccc---
Q 048012 398 FSPDEQLFLTGTSVERESTTGGLLCFYDREKLELVSRVGISPACSVVQCAWHPKLNQIFATAGDKSQGGTHILYDPR--- 474 (616)
Q Consensus 398 fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~~~~~~~v~~~~--- 474 (616)
+||||++|+++- -|++++||-+.+.+....+.. |.-+|.++..+|+.+.|++++. +..+.+|.+.
T Consensus 516 ~Spdgk~LaVsL-------LdnTVkVyflDtlKFflsLYG-HkLPV~smDIS~DSklivTgSA----DKnVKiWGLdFGD 583 (888)
T KOG0306|consen 516 VSPDGKLLAVSL-------LDNTVKVYFLDTLKFFLSLYG-HKLPVLSMDISPDSKLIVTGSA----DKNVKIWGLDFGD 583 (888)
T ss_pred EcCCCcEEEEEe-------ccCeEEEEEecceeeeeeecc-cccceeEEeccCCcCeEEeccC----CCceEEeccccch
Confidence 999999999999 899999999999998888864 7889999999999999999998 5567777644
Q ss_pred ----------------CCCCCcEEEEecCCcceeccccc--------------CCceeeCCCCCCcccC
Q 048012 475 ----------------LSERGALVCVARAPRKKSVDDFE--------------VAPVIHNPHALPLFRD 513 (616)
Q Consensus 475 ----------------~s~~g~~l~s~~~d~~~~~wd~~--------------~~~~~~~p~~~~l~~~ 513 (616)
|-|+..++.+++.|+.++.||-. +..+...|.+..+++.
T Consensus 584 CHKS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G~~vvs~ 652 (888)
T KOG0306|consen 584 CHKSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNGSFVVSS 652 (888)
T ss_pred hhhhhhcccCceeEEEEcccceeEEEecCcceEEeechhhhhhheeeccchheeeeeEEcCCCCeEEec
Confidence 56778889999999999999752 2234556776555544
No 53
>PTZ00421 coronin; Provisional
Probab=99.97 E-value=3.6e-28 Score=254.23 Aligned_cols=283 Identities=14% Similarity=0.219 Sum_probs=216.6
Q ss_pred CcccEEEEEECCCCCEEEEEEcCCcEEEEeCCCCcccc--------ccceecCCCCCCceEEEEecC-CCCeEEEEeCCC
Q 048012 148 HTKIVSALAVDHSGSRVLSGSYDYTVRMYDFQGMNSRL--------QSFRQLEPSEGHQVRNLSWSP-TSDRFLCVTGSA 218 (616)
Q Consensus 148 H~~~V~~v~~sp~g~~lasgs~Dg~i~iwd~~~~~~~~--------~~~~~~~~~~~~~v~~l~~sp-~g~~l~~~s~d~ 218 (616)
|-..|+...+++++..+++++.+..+..|+..++...+ ........+|...|.+++|+| ++++|++++.|+
T Consensus 19 ~~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~Dg 98 (493)
T PTZ00421 19 HFLNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDG 98 (493)
T ss_pred ceeccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCC
Confidence 44556677777888888888888888889876542111 011112346778899999999 788999999999
Q ss_pred eEEEEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEEEECCCccccceEEeeeccCCC
Q 048012 219 QAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPG 298 (616)
Q Consensus 219 ~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~ 298 (616)
.|+|||+....+... ....+..+.+|...|.+++|+|.+.++|++++.|++|+|||+.++.....+ ..|
T Consensus 99 tIkIWdi~~~~~~~~-----~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l------~~h 167 (493)
T PTZ00421 99 TIMGWGIPEEGLTQN-----ISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVI------KCH 167 (493)
T ss_pred EEEEEecCCCccccc-----cCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEE------cCC
Confidence 999999875432100 001244568999999999999987679999999999999999876543322 245
Q ss_pred CccEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCCCCCceeeecCCCCC-eEEEEEcCCCCeEEEEe----cCCcEEEEe
Q 048012 299 RVAVTTCAWDCDGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHSDD-ITALKFSSDGRILLSRS----FDGSLKVWD 373 (616)
Q Consensus 299 ~~~v~~~~~sp~g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~h~~~-V~~l~~spdg~~l~s~s----~Dg~v~lwd 373 (616)
...|.+++|+|+|.+|++++.||+|+|||++++ ..+..+.+|.+. +..+.|.+++.+|++++ .|+.|+|||
T Consensus 168 ~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg----~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWD 243 (493)
T PTZ00421 168 SDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDG----TIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWD 243 (493)
T ss_pred CCceEEEEEECCCCEEEEecCCCEEEEEECCCC----cEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEe
Confidence 557999999999999999999999999999976 466777888765 45788999888888765 478999999
Q ss_pred CCCCCCcceEecCCCCCCcceeEEECCCCCEEEEeeccccccCCCceEEEEeCCCCceEEEEecCCCCCeEEEEEcCCC
Q 048012 374 LRKMKEPLKVFEDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREKLELVSRVGISPACSVVQCAWHPKL 452 (616)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~ 452 (616)
+++...++..... .....+....|++++.+|++++. .|+.|++||+.+++++..........+..++|.|..
T Consensus 244 lr~~~~p~~~~~~-d~~~~~~~~~~d~d~~~L~lggk------gDg~Iriwdl~~~~~~~~~~~~s~~~~~g~~~~pk~ 315 (493)
T PTZ00421 244 TRKMASPYSTVDL-DQSSALFIPFFDEDTNLLYIGSK------GEGNIRCFELMNERLTFCSSYSSVEPHKGLCMMPKW 315 (493)
T ss_pred CCCCCCceeEecc-CCCCceEEEEEcCCCCEEEEEEe------CCCeEEEEEeeCCceEEEeeccCCCCCcceEecccc
Confidence 9987766655432 22334666789999999998873 599999999999998887766555678889999974
No 54
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.97 E-value=5.4e-29 Score=233.68 Aligned_cols=269 Identities=20% Similarity=0.316 Sum_probs=216.0
Q ss_pred CCcceEEecCCcccEEEEEECCCCC---EEEEEEcCCcEEEEeCCCCccccccceecCCCCCCceEEEEecCCCCeEEEE
Q 048012 138 PMSNEIVLKGHTKIVSALAVDHSGS---RVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSDRFLCV 214 (616)
Q Consensus 138 p~~~~~~l~~H~~~V~~v~~sp~g~---~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~ 214 (616)
.-+...++.||+++|.+++|.-... +|+++|.|.++++|.++.+........ ...+|...|.+++..++|.+++++
T Consensus 133 ~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~-~~~GHk~~V~sVsv~~sgtr~~Sg 211 (423)
T KOG0313|consen 133 KGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALK-VCRGHKRSVDSVSVDSSGTRFCSG 211 (423)
T ss_pred CCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHh-HhcccccceeEEEecCCCCeEEee
Confidence 3345667889999999888864433 599999999999999987554333332 223788899999999999999999
Q ss_pred eCCCeEEEEECCCCeeeeE-------------eeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEEEECC
Q 048012 215 TGSAQAKIYDRDGLTLGEF-------------VKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVN 281 (616)
Q Consensus 215 s~d~~v~vwd~~~~~~~~~-------------~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~ 281 (616)
+.|..++||+.......+. .+....-.++..+.||...|.++.|++. ..+++++.|.+|+.||+.
T Consensus 212 S~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d~--~v~yS~SwDHTIk~WDle 289 (423)
T KOG0313|consen 212 SWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSDA--TVIYSVSWDHTIKVWDLE 289 (423)
T ss_pred cccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcCC--CceEeecccceEEEEEee
Confidence 9999999999432221111 0111112345667899999999999984 589999999999999999
Q ss_pred CccccceEEeeeccCCCCccEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCCCCCceeeecCCCCCeEEEEEcC-CCCeE
Q 048012 282 EFKSQKQVIKPKLARPGRVAVTTCAWDCDGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHSDDITALKFSS-DGRIL 360 (616)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp-dg~~l 360 (616)
+++....+.... .++|+.+++..++|++|+.|..|++||.+++. .......+.+|...|.++.|+| +..+|
T Consensus 290 tg~~~~~~~~~k-------sl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~-gs~v~~s~~gH~nwVssvkwsp~~~~~~ 361 (423)
T KOG0313|consen 290 TGGLKSTLTTNK-------SLNCISYSPLSKLLASGSSDRHIRLWDPRTGD-GSVVSQSLIGHKNWVSSVKWSPTNEFQL 361 (423)
T ss_pred cccceeeeecCc-------ceeEeecccccceeeecCCCCceeecCCCCCC-CceeEEeeecchhhhhheecCCCCceEE
Confidence 987766654332 68999999999999999999999999999873 3455678899999999999999 55678
Q ss_pred EEEecCCcEEEEeCCCCCCcceEecCCCCCCcceeEEECCCCCEEEEeeccccccCCCceEEEEeCC
Q 048012 361 LSRSFDGSLKVWDLRKMKEPLKVFEDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDRE 427 (616)
Q Consensus 361 ~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~ 427 (616)
++++.|+++++||+|+.+.++..+..| ...|.++.|. ++.+|++|+ .|.+|+|+...
T Consensus 362 ~S~S~D~t~klWDvRS~k~plydI~~h--~DKvl~vdW~-~~~~IvSGG-------aD~~l~i~~~~ 418 (423)
T KOG0313|consen 362 VSGSYDNTVKLWDVRSTKAPLYDIAGH--NDKVLSVDWN-EGGLIVSGG-------ADNKLRIFKGS 418 (423)
T ss_pred EEEecCCeEEEEEeccCCCcceeeccC--CceEEEEecc-CCceEEecc-------CcceEEEeccc
Confidence 999999999999999988788887765 4559999998 577999999 89999998743
No 55
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.97 E-value=1.3e-28 Score=220.96 Aligned_cols=274 Identities=17% Similarity=0.264 Sum_probs=233.1
Q ss_pred CCCCCCceEEEEecCCCCeEEEEeCCCeEEEEEC-CCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEe
Q 048012 192 EPSEGHQVRNLSWSPTSDRFLCVTGSAQAKIYDR-DGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSS 270 (616)
Q Consensus 192 ~~~~~~~v~~l~~sp~g~~l~~~s~d~~v~vwd~-~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s 270 (616)
..+|..+++.+.|+.+|++|++++.|..+.||-. ++.. +-++.||++.|+|+...-+. ..+++|+
T Consensus 6 l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGer-------------lGty~GHtGavW~~Did~~s-~~liTGS 71 (327)
T KOG0643|consen 6 LQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGER-------------LGTYDGHTGAVWCCDIDWDS-KHLITGS 71 (327)
T ss_pred cccCccccceEEecCCCcEEEEecCCCCceEEEecCCce-------------eeeecCCCceEEEEEecCCc-ceeeecc
Confidence 3457788999999999999999999999999986 4444 44468999999999998877 5899999
Q ss_pred CCCCEEEEECCCccccceEEeeeccCCCCccEEEEEECCCCCeEEEEeC-----CCcEEEEeCCCCC---CCCCceeeec
Q 048012 271 EDGSLRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWDCDGKCIAGGIG-----DGSIQVWNLKPGW---GSRPDIHVEK 342 (616)
Q Consensus 271 ~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~g~~-----dg~I~iwd~~~~~---~~~~~~~~~~ 342 (616)
.|.+++|||+.+++++...... .+|..+.|+.+|++++.... .+.|.++|++... ....++..+.
T Consensus 72 AD~t~kLWDv~tGk~la~~k~~-------~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~ 144 (327)
T KOG0643|consen 72 ADQTAKLWDVETGKQLATWKTN-------SPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIP 144 (327)
T ss_pred ccceeEEEEcCCCcEEEEeecC-------CeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEec
Confidence 9999999999999877665332 27999999999999888765 3679999998431 1224466777
Q ss_pred CCCCCeEEEEEcCCCCeEEEEecCCcEEEEeCCCCCCcceEecCCCCCCcceeEEECCCCCEEEEeeccccccCCCceEE
Q 048012 343 GHSDDITALKFSSDGRILLSRSFDGSLKVWDLRKMKEPLKVFEDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLC 422 (616)
Q Consensus 343 ~h~~~V~~l~~spdg~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~ 422 (616)
.+.+.++.+-|.|-+++|++|..||.|.+||++++...+.....|. ..|+.++|++|..++++++ .|.+-+
T Consensus 145 t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~--~~Ind~q~s~d~T~FiT~s-------~Dttak 215 (327)
T KOG0643|consen 145 TPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEEHS--SKINDLQFSRDRTYFITGS-------KDTTAK 215 (327)
T ss_pred CCccceeeeeecccCCEEEEecCCCcEEEEEcccCceeeechhhhc--cccccccccCCcceEEecc-------cCccce
Confidence 7889999999999999999999999999999998876666555544 4699999999999999999 899999
Q ss_pred EEeCCCCceEEEEecCCCCCeEEEEEcCCCCcEEEEeccC-----------------------------CCCceEEEecc
Q 048012 423 FYDREKLELVSRVGISPACSVVQCAWHPKLNQIFATAGDK-----------------------------SQGGTHILYDP 473 (616)
Q Consensus 423 iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~-----------------------------~~~~~~~v~~~ 473 (616)
+||+.+.+++.++.. ..+|++.+++|....++.+++-. ..+|-..|..+
T Consensus 216 l~D~~tl~v~Kty~t--e~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsv 293 (327)
T KOG0643|consen 216 LVDVRTLEVLKTYTT--ERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSV 293 (327)
T ss_pred eeeccceeeEEEeee--cccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCccee
Confidence 999999999999964 57899999999988888877644 35788888999
Q ss_pred cCCCCCcEEEEecCCcceeccccc
Q 048012 474 RLSERGALVCVARAPRKKSVDDFE 497 (616)
Q Consensus 474 ~~s~~g~~l~s~~~d~~~~~wd~~ 497 (616)
+|+|+|+..++|+.|+.|++.-+.
T Consensus 294 AfhPdGksYsSGGEDG~VR~h~Fd 317 (327)
T KOG0643|consen 294 AFHPDGKSYSSGGEDGYVRLHHFD 317 (327)
T ss_pred EECCCCcccccCCCCceEEEEEec
Confidence 999999999999999999988664
No 56
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=4.4e-29 Score=257.47 Aligned_cols=296 Identities=17% Similarity=0.220 Sum_probs=206.5
Q ss_pred CCcccEEEEEECCCCCEEEEEEcCCcEEEEeCCCCccc---cccceecCC--CCCCceEEEEecC---CCCeEE--EEeC
Q 048012 147 GHTKIVSALAVDHSGSRVLSGSYDYTVRMYDFQGMNSR---LQSFRQLEP--SEGHQVRNLSWSP---TSDRFL--CVTG 216 (616)
Q Consensus 147 ~H~~~V~~v~~sp~g~~lasgs~Dg~i~iwd~~~~~~~---~~~~~~~~~--~~~~~v~~l~~sp---~g~~l~--~~s~ 216 (616)
.|.++|.||.||+||+|||+||.||.||||.+...... ......+.. .....+.-+.-+. .++... .+..
T Consensus 265 ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~ 344 (712)
T KOG0283|consen 265 AHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQ 344 (712)
T ss_pred ccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccC
Confidence 89999999999999999999999999999998652110 000000000 0000000000111 001000 1111
Q ss_pred CCeEEEEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEEEECCCccccceEEeeeccC
Q 048012 217 SAQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLAR 296 (616)
Q Consensus 217 d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~ 296 (616)
... .+...... ....+++..+.||++.|..+.|+.+ ++|++++.|.|||||++....+++.+.
T Consensus 345 s~~-~~~p~~~f--------~f~ekP~~ef~GHt~DILDlSWSKn--~fLLSSSMDKTVRLWh~~~~~CL~~F~------ 407 (712)
T KOG0283|consen 345 SPC-VLLPLKAF--------VFSEKPFCEFKGHTADILDLSWSKN--NFLLSSSMDKTVRLWHPGRKECLKVFS------ 407 (712)
T ss_pred Ccc-ccCCCccc--------cccccchhhhhccchhheecccccC--CeeEeccccccEEeecCCCcceeeEEe------
Confidence 111 11111111 1122457778999999999999986 599999999999999999877777663
Q ss_pred CCCccEEEEEECC-CCCeEEEEeCCCcEEEEeCCCCCCCCCceeeecCCCCCeEEEEEcCCCCeEEEEecCCcEEEEeCC
Q 048012 297 PGRVAVTTCAWDC-DGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHSDDITALKFSSDGRILLSRSFDGSLKVWDLR 375 (616)
Q Consensus 297 ~~~~~v~~~~~sp-~g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~v~lwd~~ 375 (616)
|...|+|++|+| |.++|++|+.||.||||++... .+..+..-..-|++++|.|||++.+.|+.+|.+++|++.
T Consensus 408 -HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~-----~Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~ 481 (712)
T KOG0283|consen 408 -HNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDK-----KVVDWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTE 481 (712)
T ss_pred -cCCeeEEEEecccCCCcEeecccccceEEeecCcC-----eeEeehhhhhhheeEEeccCCceEEEEEeccEEEEEEcc
Confidence 444899999999 7889999999999999999753 444444444779999999999999999999999999998
Q ss_pred CCCCcceEecC------CCCCCcceeEEECCCCC-EEEEeeccccccCCCceEEEEeCCCCceEEEEecCCC-CCeEEEE
Q 048012 376 KMKEPLKVFED------LPNNYAQTNVAFSPDEQ-LFLTGTSVERESTTGGLLCFYDREKLELVSRVGISPA-CSVVQCA 447 (616)
Q Consensus 376 ~~~~~~~~~~~------~~~~~~v~~v~fspdg~-~l~~gs~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~~v~~~~ 447 (616)
..+......-. ..+. .|+.+.|.|... .|++.+ .|..|+|||.++.+++..++..+. ..-....
T Consensus 482 ~lk~~~~~~I~~~~~Kk~~~~-rITG~Q~~p~~~~~vLVTS-------nDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~As 553 (712)
T KOG0283|consen 482 GLKLVSDFHIRLHNKKKKQGK-RITGLQFFPGDPDEVLVTS-------NDSRIRIYDGRDKDLVHKFKGFRNTSSQISAS 553 (712)
T ss_pred CCeEEEeeeEeeccCccccCc-eeeeeEecCCCCCeEEEec-------CCCceEEEeccchhhhhhhcccccCCcceeee
Confidence 64321111111 1122 699999997544 344445 799999999999999888875443 4457778
Q ss_pred EcCCCCcEEEEeccCCCCceEEEecccCCC
Q 048012 448 WHPKLNQIFATAGDKSQGGTHILYDPRLSE 477 (616)
Q Consensus 448 ~~p~~~~l~~~~~d~~~~~~~~v~~~~~s~ 477 (616)
|..+|++|++++. ++.+.||.....+
T Consensus 554 fs~Dgk~IVs~se----Ds~VYiW~~~~~~ 579 (712)
T KOG0283|consen 554 FSSDGKHIVSASE----DSWVYIWKNDSFN 579 (712)
T ss_pred EccCCCEEEEeec----CceEEEEeCCCCc
Confidence 9999999999996 8999999975443
No 57
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.97 E-value=1.9e-28 Score=230.09 Aligned_cols=291 Identities=17% Similarity=0.260 Sum_probs=224.4
Q ss_pred CCcccEEEEEECCCCCEEEEEEcCCcEEEEeCCCCccccccceecCCCCCCceEEEEecCCCC---eEEEEeCCCeEEEE
Q 048012 147 GHTKIVSALAVDHSGSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSD---RFLCVTGSAQAKIY 223 (616)
Q Consensus 147 ~H~~~V~~v~~sp~g~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~---~l~~~s~d~~v~vw 223 (616)
-|...|.+|... +..++||++||.+||||..+. ......+|..+|.+++|.-... .|++++.|.++++|
T Consensus 103 ~hdDWVSsv~~~--~~~IltgsYDg~~riWd~~Gk------~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw 174 (423)
T KOG0313|consen 103 LHDDWVSSVKGA--SKWILTGSYDGTSRIWDLKGK------SIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLW 174 (423)
T ss_pred cchhhhhhhccc--CceEEEeecCCeeEEEecCCc------eEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEE
Confidence 589999999887 789999999999999999873 3444557888999888855444 49999999999999
Q ss_pred ECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEEEECCCccc------------------
Q 048012 224 DRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKS------------------ 285 (616)
Q Consensus 224 d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~------------------ 285 (616)
.++...... ..++...||...|.++...+++ ..+++|+.|.+|.||+..+...
T Consensus 175 ~~~~~~~~~--------~~~~~~~GHk~~V~sVsv~~sg-tr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~ 245 (423)
T KOG0313|consen 175 KWNVGENKV--------KALKVCRGHKRSVDSVSVDSSG-TRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREK 245 (423)
T ss_pred EecCchhhh--------hHHhHhcccccceeEEEecCCC-CeEEeecccceeeecccCCCccccccccchhhhhhhhhhh
Confidence 988554321 2344456999999999999987 6999999999999999321100
Q ss_pred -cceEEeeeccCCCCccEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCCCCCceeeecCCCCCeEEEEEcCCCCeEEEEe
Q 048012 286 -QKQVIKPKLARPGRVAVTTCAWDCDGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHSDDITALKFSSDGRILLSRS 364 (616)
Q Consensus 286 -~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s 364 (616)
...-.......+|+.+|.++.|++ ...+++++.|.+|+.||+.++ .....+.+ ...+.+|.++|..++|++|+
T Consensus 246 ~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg----~~~~~~~~-~ksl~~i~~~~~~~Ll~~gs 319 (423)
T KOG0313|consen 246 EGGTRTPLVTLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETG----GLKSTLTT-NKSLNCISYSPLSKLLASGS 319 (423)
T ss_pred cccccCceEEecccccceeeEEEcC-CCceEeecccceEEEEEeecc----cceeeeec-CcceeEeecccccceeeecC
Confidence 000000112247888999999998 778999999999999999987 44444443 35699999999999999999
Q ss_pred cCCcEEEEeCCCCCCcceEecCCCCCCcceeEEECCCCCEEEEeeccccccCCCceEEEEeCCCCc-eEEEEecCCCCCe
Q 048012 365 FDGSLKVWDLRKMKEPLKVFEDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREKLE-LVSRVGISPACSV 443 (616)
Q Consensus 365 ~Dg~v~lwd~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~~v 443 (616)
.|..|+|||.|++...+.......|...|.++.|+|...++++..+ .|+++++||+++.+ .++.+.. |...|
T Consensus 320 sdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S------~D~t~klWDvRS~k~plydI~~-h~DKv 392 (423)
T KOG0313|consen 320 SDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGS------YDNTVKLWDVRSTKAPLYDIAG-HNDKV 392 (423)
T ss_pred CCCceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEe------cCCeEEEEEeccCCCcceeecc-CCceE
Confidence 9999999999987655555555556678999999998766554433 99999999999887 7888764 67888
Q ss_pred EEEEEcCCCCcEEEEeccCCCCceEEEec
Q 048012 444 VQCAWHPKLNQIFATAGDKSQGGTHILYD 472 (616)
Q Consensus 444 ~~~~~~p~~~~l~~~~~d~~~~~~~~v~~ 472 (616)
.++.|... ..|++|+. +..++++.
T Consensus 393 l~vdW~~~-~~IvSGGa----D~~l~i~~ 416 (423)
T KOG0313|consen 393 LSVDWNEG-GLIVSGGA----DNKLRIFK 416 (423)
T ss_pred EEEeccCC-ceEEeccC----cceEEEec
Confidence 88888754 45666665 55565553
No 58
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=2.7e-28 Score=236.30 Aligned_cols=272 Identities=17% Similarity=0.246 Sum_probs=221.5
Q ss_pred cccEEEEEECCCCC--EEEEEEcCCcEEEEeCCCCccccccceecCCCCCCceEEEEecCCCCeEEEEeCCCeEEEEECC
Q 048012 149 TKIVSALAVDHSGS--RVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSDRFLCVTGSAQAKIYDRD 226 (616)
Q Consensus 149 ~~~V~~v~~sp~g~--~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~s~d~~v~vwd~~ 226 (616)
...|++++|+|... +.+|+| -.+.||+..+... .+.+. .-...|++++|-.||++|++|...|.|+|||..
T Consensus 26 ~~~vssl~fsp~~P~d~aVt~S--~rvqly~~~~~~~-~k~~s----rFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k 98 (487)
T KOG0310|consen 26 HNSVSSLCFSPKHPYDFAVTSS--VRVQLYSSVTRSV-RKTFS----RFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMK 98 (487)
T ss_pred cCcceeEecCCCCCCceEEecc--cEEEEEecchhhh-hhhHH----hhccceeEEEeecCCeEEEccCCcCcEEEeccc
Confidence 36799999999653 344443 4688998776431 11111 123349999999999999999999999999966
Q ss_pred CCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEEEECCCccccceEEeeeccCCCCccEEEEE
Q 048012 227 GLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPGRVAVTTCA 306 (616)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~ 306 (616)
... .++.+.+|..+|..+.|+|.+..+|++|+.|+.+++||+.+...+ ....+|...|.|.+
T Consensus 99 ~r~------------iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~------~~l~~htDYVR~g~ 160 (487)
T KOG0310|consen 99 SRV------------ILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQ------AELSGHTDYVRCGD 160 (487)
T ss_pred cHH------------HHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEE------EEecCCcceeEeec
Confidence 543 266789999999999999999899999999999999999876521 12246777999999
Q ss_pred ECCC-CCeEEEEeCCCcEEEEeCCCCCCCCCceeeecCCCCCeEEEEEcCCCCeEEEEecCCcEEEEeCCCCCCcceEec
Q 048012 307 WDCD-GKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHSDDITALKFSSDGRILLSRSFDGSLKVWDLRKMKEPLKVFE 385 (616)
Q Consensus 307 ~sp~-g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~v~lwd~~~~~~~~~~~~ 385 (616)
|+|. +.++++|+.||.|++||++.. ........|..+|.+|.|-|.|.+|++++. ..|++||+.++++.+..+.
T Consensus 161 ~~~~~~hivvtGsYDg~vrl~DtR~~----~~~v~elnhg~pVe~vl~lpsgs~iasAgG-n~vkVWDl~~G~qll~~~~ 235 (487)
T KOG0310|consen 161 ISPANDHIVVTGSYDGKVRLWDTRSL----TSRVVELNHGCPVESVLALPSGSLIASAGG-NSVKVWDLTTGGQLLTSMF 235 (487)
T ss_pred cccCCCeEEEecCCCceEEEEEeccC----CceeEEecCCCceeeEEEcCCCCEEEEcCC-CeEEEEEecCCceehhhhh
Confidence 9995 558999999999999999974 133334468899999999999999999984 5799999998776555554
Q ss_pred CCCCCCcceeEEECCCCCEEEEeeccccccCCCceEEEEeCCCCceEEEEecCCCCCeEEEEEcCCCCcEEEEecc
Q 048012 386 DLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREKLELVSRVGISPACSVVQCAWHPKLNQIFATAGD 461 (616)
Q Consensus 386 ~~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d 461 (616)
. |...|+|+++..++..|++|+ -|+.+++||+.+.+.++.+..+ ++|.+++.+|++..+++|.++
T Consensus 236 ~--H~KtVTcL~l~s~~~rLlS~s-------LD~~VKVfd~t~~Kvv~s~~~~--~pvLsiavs~dd~t~viGmsn 300 (487)
T KOG0310|consen 236 N--HNKTVTCLRLASDSTRLLSGS-------LDRHVKVFDTTNYKVVHSWKYP--GPVLSIAVSPDDQTVVIGMSN 300 (487)
T ss_pred c--ccceEEEEEeecCCceEeecc-------cccceEEEEccceEEEEeeecc--cceeeEEecCCCceEEEeccc
Confidence 4 455699999999999999999 9999999999999999999764 789999999999999999985
No 59
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=7.8e-28 Score=220.81 Aligned_cols=302 Identities=17% Similarity=0.202 Sum_probs=216.5
Q ss_pred eEEecCCcccEEEEEECCCCCEEEEEEcCCcEEEEeCCCCccccccceecCCCCCCceEEEEecCCCCeEEEEe-CCCeE
Q 048012 142 EIVLKGHTKIVSALAVDHSGSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSDRFLCVT-GSAQA 220 (616)
Q Consensus 142 ~~~l~~H~~~V~~v~~sp~g~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~s-~d~~v 220 (616)
.-+|++|.+.|++|+|+.+|++|||++.|++||||++.........+......-+ -.+.+.|+||.+-+++.. ....+
T Consensus 79 ~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~d-hpT~V~FapDc~s~vv~~~~g~~l 157 (420)
T KOG2096|consen 79 VSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYD-HPTRVVFAPDCKSVVVSVKRGNKL 157 (420)
T ss_pred hhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCC-CceEEEECCCcceEEEEEccCCEE
Confidence 3478999999999999999999999999999999998865432222221221122 468899999988766655 45689
Q ss_pred EEEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEEEECCCccccceEEeeeccCCCCc
Q 048012 221 KIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPGRV 300 (616)
Q Consensus 221 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~ 300 (616)
++|-+...+-....-....+..+...+.|...|..+-....+ .+|++++.|..|.||+++ ++.+..+.... .
T Consensus 158 ~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~-k~imsas~dt~i~lw~lk-Gq~L~~idtnq------~ 229 (420)
T KOG2096|consen 158 CVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNA-KYIMSASLDTKICLWDLK-GQLLQSIDTNQ------S 229 (420)
T ss_pred EEEEeeecccCCCCcccccccccccchhcccceEEEeecCCc-eEEEEecCCCcEEEEecC-Cceeeeecccc------c
Confidence 999865433211111111111223345566666666666544 699999999999999998 44444332211 1
Q ss_pred cEEEEEECCCCCeEEEEeCCCcEEEEeCCCC----CCCCCceeeecCCCCCeEEEEEcCCCCeEEEEecCCcEEEEeCCC
Q 048012 301 AVTTCAWDCDGKCIAGGIGDGSIQVWNLKPG----WGSRPDIHVEKGHSDDITALKFSSDGRILLSRSFDGSLKVWDLRK 376 (616)
Q Consensus 301 ~v~~~~~sp~g~~l~~g~~dg~I~iwd~~~~----~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~v~lwd~~~ 376 (616)
.-+.++.+|+|++|++++----|++|.+--+ ......+..+.+|.+.|..++|+++...+++.+.||+++|||+.-
T Consensus 230 ~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdV 309 (420)
T KOG2096|consen 230 SNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDV 309 (420)
T ss_pred cccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccc
Confidence 3466789999999999999889999986322 112234567899999999999999999999999999999999852
Q ss_pred C----C--CcceEec--CCCCCCcceeEEECCCCCEEEEeeccccccCCCceEEEEeCCCCceEEEEecCCCCCeEEEEE
Q 048012 377 M----K--EPLKVFE--DLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREKLELVSRVGISPACSVVQCAW 448 (616)
Q Consensus 377 ~----~--~~~~~~~--~~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~ 448 (616)
. . ..++... .+........+.++|.|+.|+... +..|++|..++++....+.--|...|.+++|
T Consensus 310 rY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~--------gs~l~~~~se~g~~~~~~e~~h~~~Is~is~ 381 (420)
T KOG2096|consen 310 RYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSF--------GSDLKVFASEDGKDYPELEDIHSTTISSISY 381 (420)
T ss_pred eEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeec--------CCceEEEEcccCccchhHHHhhcCceeeEEe
Confidence 1 1 1112211 112233456899999999999985 6789999999998877776667888999999
Q ss_pred cCCCCcEEEEec
Q 048012 449 HPKLNQIFATAG 460 (616)
Q Consensus 449 ~p~~~~l~~~~~ 460 (616)
+++|+++++++.
T Consensus 382 ~~~g~~~atcGd 393 (420)
T KOG2096|consen 382 SSDGKYIATCGD 393 (420)
T ss_pred cCCCcEEeeecc
Confidence 999998887763
No 60
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.96 E-value=2.8e-27 Score=234.23 Aligned_cols=268 Identities=23% Similarity=0.365 Sum_probs=215.5
Q ss_pred CCCCceEEEEecCCCCeEEEEeCCCeEEEEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCC
Q 048012 194 SEGHQVRNLSWSPTSDRFLCVTGSAQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDG 273 (616)
Q Consensus 194 ~~~~~v~~l~~sp~g~~l~~~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg 273 (616)
.|..+|.+++|+|++++|++++.++.+++|++..... ......|...+..+.|++++ .+|++++.|+
T Consensus 7 ~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~------------~~~~~~~~~~i~~~~~~~~~-~~l~~~~~~~ 73 (289)
T cd00200 7 GHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGEL------------LRTLKGHTGPVRDVAASADG-TYLASGSSDK 73 (289)
T ss_pred ccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCc------------EEEEecCCcceeEEEECCCC-CEEEEEcCCC
Confidence 5677899999999999999999999999999886642 22346788889999999987 5899999999
Q ss_pred CEEEEECCCccccceEEeeeccCCCCccEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCCCCCceeeecCCCCCeEEEEE
Q 048012 274 SLRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWDCDGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHSDDITALKF 353 (616)
Q Consensus 274 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~ 353 (616)
.|++||+...+....+. .+...+.++.|+++++++++++.+|.|++||++++ .....+..|...|.+++|
T Consensus 74 ~i~i~~~~~~~~~~~~~------~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~----~~~~~~~~~~~~i~~~~~ 143 (289)
T cd00200 74 TIRLWDLETGECVRTLT------GHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETG----KCLTTLRGHTDWVNSVAF 143 (289)
T ss_pred eEEEEEcCcccceEEEe------ccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCc----EEEEEeccCCCcEEEEEE
Confidence 99999998754433332 33347999999999999999988999999999864 456667789999999999
Q ss_pred cCCCCeEEEEecCCcEEEEeCCCCCCcceEecCCCCCCcceeEEECCCCCEEEEeeccccccCCCceEEEEeCCCCceEE
Q 048012 354 SSDGRILLSRSFDGSLKVWDLRKMKEPLKVFEDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREKLELVS 433 (616)
Q Consensus 354 spdg~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~~~~~~ 433 (616)
+|++.+|++++.|+.|++||++... .+..+.. +...+.+++|+|+++.|++++ .++.|++||+.+++.+.
T Consensus 144 ~~~~~~l~~~~~~~~i~i~d~~~~~-~~~~~~~--~~~~i~~~~~~~~~~~l~~~~-------~~~~i~i~d~~~~~~~~ 213 (289)
T cd00200 144 SPDGTFVASSSQDGTIKLWDLRTGK-CVATLTG--HTGEVNSVAFSPDGEKLLSSS-------SDGTIKLWDLSTGKCLG 213 (289)
T ss_pred cCcCCEEEEEcCCCcEEEEEccccc-cceeEec--CccccceEEECCCcCEEEEec-------CCCcEEEEECCCCceec
Confidence 9999999988889999999998643 3444443 334699999999999999998 79999999999988888
Q ss_pred EEecCCCCCeEEEEEcCCCCcEEEEeccC---------------CCCceEEEecccCCCCCcEEEEecCCcceeccc
Q 048012 434 RVGISPACSVVQCAWHPKLNQIFATAGDK---------------SQGGTHILYDPRLSERGALVCVARAPRKKSVDD 495 (616)
Q Consensus 434 ~~~~~~~~~v~~~~~~p~~~~l~~~~~d~---------------~~~~~~~v~~~~~s~~g~~l~s~~~d~~~~~wd 495 (616)
.+.. +...+.++.|++++..+++++.++ ...+...+..+.+++++.+|++++.++.+++|+
T Consensus 214 ~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 214 TLRG-HENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred chhh-cCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEccccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 7743 556899999999966666665332 112222344466788889999999999999986
No 61
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=1.3e-27 Score=245.45 Aligned_cols=293 Identities=17% Similarity=0.334 Sum_probs=223.2
Q ss_pred EecCCcccEEEEEECCCCCEEEEEEcCCcEEEEeCCCCccccccceecCCCCCCceEEEEecCCCCeEEEEeCCCeEEEE
Q 048012 144 VLKGHTKIVSALAVDHSGSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSDRFLCVTGSAQAKIY 223 (616)
Q Consensus 144 ~l~~H~~~V~~v~~sp~g~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~s~d~~v~vw 223 (616)
.|.+|.++|+.|+|+|++.++++|+.|..|+||++..... .....+|-..|+.+.|++.-.++++++.|.+|+||
T Consensus 46 rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrc-----lftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIW 120 (1202)
T KOG0292|consen 46 RFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRC-----LFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIW 120 (1202)
T ss_pred hhhccCCccceeeecCCCCeEEecCCccEEEEEeccccee-----hhhhccccceeEEeeccCCCceEEEccCCCeEEEE
Confidence 4678999999999999999999999999999999876321 11223566679999999999999999999999999
Q ss_pred ECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEEEECCCccccc----------------
Q 048012 224 DRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQK---------------- 287 (616)
Q Consensus 224 d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~---------------- 287 (616)
++.+... +..+.||..-|.|..|||.. .+++++|.|.+|||||+...+...
T Consensus 121 Nwqsr~~------------iavltGHnHYVMcAqFhptE-DlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~ 187 (1202)
T KOG0292|consen 121 NWQSRKC------------IAVLTGHNHYVMCAQFHPTE-DLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGN 187 (1202)
T ss_pred eccCCce------------EEEEecCceEEEeeccCCcc-ceEEEecccceEEEEeecchhccCCCCCCchhhhhccccc
Confidence 9998764 55589999999999999966 699999999999999985422110
Q ss_pred -------eEEeeeccCCCCccEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCCCCCceeeecCCCCCeEEEEEcCCCCeE
Q 048012 288 -------QVIKPKLARPGRVAVTTCAWDCDGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHSDDITALKFSSDGRIL 360 (616)
Q Consensus 288 -------~~~~~~~~~~~~~~v~~~~~sp~g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l 360 (616)
.....+...+|.-.|+.++|+|.-.+|++|+.|..|++|.+... ..-.+.+..+|...|+++-|+|..+++
T Consensus 188 ~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnet--KaWEvDtcrgH~nnVssvlfhp~q~lI 265 (1202)
T KOG0292|consen 188 SDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNET--KAWEVDTCRGHYNNVSSVLFHPHQDLI 265 (1202)
T ss_pred hhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEeccc--cceeehhhhcccCCcceEEecCcccee
Confidence 01112223467778999999999999999999999999998754 334566789999999999999999999
Q ss_pred EEEecCCcEEEEeCCCCCCcceEecCCCCCCcceeEEECCCCCEEEEeeccc-------cc------------cCCCceE
Q 048012 361 LSRSFDGSLKVWDLRKMKEPLKVFEDLPNNYAQTNVAFSPDEQLFLTGTSVE-------RE------------STTGGLL 421 (616)
Q Consensus 361 ~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~gs~~~-------~~------------~~~dg~i 421 (616)
+|.|.|++|++||+.+ +..++++..-. ...+.++-+|..+++++|.... +. --.+..|
T Consensus 266 lSnsEDksirVwDm~k-Rt~v~tfrren--dRFW~laahP~lNLfAAgHDsGm~VFkleRErpa~~v~~n~LfYvkd~~i 342 (1202)
T KOG0292|consen 266 LSNSEDKSIRVWDMTK-RTSVQTFRREN--DRFWILAAHPELNLFAAGHDSGMIVFKLERERPAYAVNGNGLFYVKDRFI 342 (1202)
T ss_pred EecCCCccEEEEeccc-ccceeeeeccC--CeEEEEEecCCcceeeeecCCceEEEEEcccCceEEEcCCEEEEEccceE
Confidence 9999999999999986 55677775433 3477799999999999886110 00 0023344
Q ss_pred EEEeCCCCceEEEEecCC----CCCeEEEEEcCCCCcEEEEe
Q 048012 422 CFYDREKLELVSRVGISP----ACSVVQCAWHPKLNQIFATA 459 (616)
Q Consensus 422 ~iwd~~~~~~~~~~~~~~----~~~v~~~~~~p~~~~l~~~~ 459 (616)
+.+|+.+.+-.......+ ..++.++.++|..+.++.++
T Consensus 343 ~~~d~~t~~d~~v~~lr~~g~~~~~~~smsYNpae~~vlics 384 (1202)
T KOG0292|consen 343 RSYDLRTQKDTAVASLRRPGTLWQPPRSLSYNPAENAVLICS 384 (1202)
T ss_pred EeeeccccccceeEeccCCCcccCCcceeeeccccCeEEEEe
Confidence 444544433222222222 24677889999877776664
No 62
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=1.5e-28 Score=219.01 Aligned_cols=246 Identities=19% Similarity=0.378 Sum_probs=200.0
Q ss_pred CCcccEEEEEECCCC-CEEEEEEcCCcEEEEeCCCCccccccceecCCCCCCceEEEEecCCC-CeEEEEeCCCeEEEEE
Q 048012 147 GHTKIVSALAVDHSG-SRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTS-DRFLCVTGSAQAKIYD 224 (616)
Q Consensus 147 ~H~~~V~~v~~sp~g-~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g-~~l~~~s~d~~v~vwd 224 (616)
.-...+..|+|+++. +.+++++.||+++|||+......+..++ .|...|.++.|++.. +.+++++-|++|++|+
T Consensus 58 d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~k----EH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~ 133 (311)
T KOG0277|consen 58 DTEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFK----EHKREVYSVDWNTVRRRIFLTSSWDGTIKLWD 133 (311)
T ss_pred ecccceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHH----hhhhheEEeccccccceeEEeeccCCceEeec
Confidence 346789999999865 5888999999999999654433333333 467789999999864 4577889999999999
Q ss_pred CCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEEEECCCccccceEEeeeccCCCCccEEE
Q 048012 225 RDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPGRVAVTT 304 (616)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~ 304 (616)
.+... .+.++.||...|....|+|...++|+++|.|++++|||++...+...+ ..|...|.|
T Consensus 134 ~~r~~------------Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i------~ah~~Eil~ 195 (311)
T KOG0277|consen 134 PNRPN------------SVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSI------EAHNSEILC 195 (311)
T ss_pred CCCCc------------ceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEE------EeccceeEe
Confidence 87543 255578999999999999999999999999999999999875433332 234457999
Q ss_pred EEECC-CCCeEEEEeCCCcEEEEeCCCCCCCCCceeeecCCCCCeEEEEEcCC-CCeEEEEecCCcEEEEeCCCCCCcce
Q 048012 305 CAWDC-DGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHSDDITALKFSSD-GRILLSRSFDGSLKVWDLRKMKEPLK 382 (616)
Q Consensus 305 ~~~sp-~g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~spd-g~~l~s~s~Dg~v~lwd~~~~~~~~~ 382 (616)
|.|+. +.++|++|+.|+.|++||+++ .+..+..+.+|.-.|..|+|||. ..+|++++.|-+++|||.......+.
T Consensus 196 cdw~ky~~~vl~Tg~vd~~vr~wDir~---~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e 272 (311)
T KOG0277|consen 196 CDWSKYNHNVLATGGVDNLVRGWDIRN---LRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIE 272 (311)
T ss_pred ecccccCCcEEEecCCCceEEEEehhh---ccccceeecCCceEEEEEecCcchhhHhhhccccceEEecccccchhhhh
Confidence 99997 667899999999999999998 45778888999999999999994 56899999999999999987666666
Q ss_pred EecCCCCCCcceeEEECC-CCCEEEEeeccccccCCCceEEEEeC
Q 048012 383 VFEDLPNNYAQTNVAFSP-DEQLFLTGTSVERESTTGGLLCFYDR 426 (616)
Q Consensus 383 ~~~~~~~~~~v~~v~fsp-dg~~l~~gs~~~~~~~~dg~i~iwd~ 426 (616)
....|. .-+..+.||+ +..+++.++ -|+.++||+.
T Consensus 273 ~~~~Ht--EFv~g~Dws~~~~~~vAs~g-------WDe~l~Vw~p 308 (311)
T KOG0277|consen 273 TVDHHT--EFVCGLDWSLFDPGQVASTG-------WDELLYVWNP 308 (311)
T ss_pred hhhccc--eEEeccccccccCceeeecc-------cccceeeecc
Confidence 665543 3488899987 466888887 8999999984
No 63
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.96 E-value=1.2e-28 Score=225.26 Aligned_cols=289 Identities=13% Similarity=0.214 Sum_probs=217.2
Q ss_pred CCCCceEEEEecCCCCeEEEEeCCCeEEEEECCCC----eeeeEeeCceeE--eecccCCCcccceEEEEEcCCCCCEEE
Q 048012 194 SEGHQVRNLSWSPTSDRFLCVTGSAQAKIYDRDGL----TLGEFVKGDMYI--RDLKNTKGHICGLTCGEWHPKTKETIL 267 (616)
Q Consensus 194 ~~~~~v~~l~~sp~g~~l~~~s~d~~v~vwd~~~~----~~~~~~~~~~~~--~~~~~~~~h~~~v~~~~~~p~~~~~l~ 267 (616)
.|..++++.+|++||.++++|+.|..|+|+|++.. ...+...++... .-++++..|...|+++.|||.. .+|+
T Consensus 110 ~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre-~ILi 188 (430)
T KOG0640|consen 110 SHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRE-TILI 188 (430)
T ss_pred ecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchh-heEE
Confidence 47788999999999999999999999999998722 222222222221 2366788999999999999976 6999
Q ss_pred EEeCCCCEEEEECCCccccceEEeeeccCCCCccEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCCCCCceeeecCCCCC
Q 048012 268 TSSEDGSLRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWDCDGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHSDD 347 (616)
Q Consensus 268 s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~h~~~ 347 (616)
+++.|++|++||+......+.+... ....+|.++.|+|.|.+|++|...-++++||+++-.+-.. ...-..|.+.
T Consensus 189 S~srD~tvKlFDfsK~saKrA~K~~----qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~Qcfvs-anPd~qht~a 263 (430)
T KOG0640|consen 189 SGSRDNTVKLFDFSKTSAKRAFKVF----QDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVS-ANPDDQHTGA 263 (430)
T ss_pred eccCCCeEEEEecccHHHHHHHHHh----hccceeeeEeecCCCceEEEecCCCceeEEeccceeEeee-cCcccccccc
Confidence 9999999999999754322222111 1122799999999999999999999999999997521111 1134579999
Q ss_pred eEEEEEcCCCCeEEEEecCCcEEEEeCCCCCCcceEecCCCCCCcceeEEECCCCCEEEEeeccccccCCCceEEEEeCC
Q 048012 348 ITALKFSSDGRILLSRSFDGSLKVWDLRKMKEPLKVFEDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDRE 427 (616)
Q Consensus 348 V~~l~~spdg~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~ 427 (616)
|++|.+++.|++.++++.||.|+|||--+ .+++..+.....+..|++..|..+|+||++.+ .|..+++|.+.
T Consensus 264 i~~V~Ys~t~~lYvTaSkDG~IklwDGVS-~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG-------~DS~vkLWEi~ 335 (430)
T KOG0640|consen 264 ITQVRYSSTGSLYVTASKDGAIKLWDGVS-NRCVRTIGNAHGGSEVCSAVFTKNGKYILSSG-------KDSTVKLWEIS 335 (430)
T ss_pred eeEEEecCCccEEEEeccCCcEEeecccc-HHHHHHHHhhcCCceeeeEEEccCCeEEeecC-------Ccceeeeeeec
Confidence 99999999999999999999999999765 45677776666677899999999999999999 89999999999
Q ss_pred CCceEEEEecCCC-C---CeEEEEEcCCCCcEE--------EEeccC---------CCCceEEEecccCCCCCcEEEEec
Q 048012 428 KLELVSRVGISPA-C---SVVQCAWHPKLNQIF--------ATAGDK---------SQGGTHILYDPRLSERGALVCVAR 486 (616)
Q Consensus 428 ~~~~~~~~~~~~~-~---~v~~~~~~p~~~~l~--------~~~~d~---------~~~~~~~v~~~~~s~~g~~l~s~~ 486 (616)
++.++..+..... + .-+...|+....+++ .++.|. ..||...+.-+..||.+-.+.+++
T Consensus 336 t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~FmTcs 415 (430)
T KOG0640|consen 336 TGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAFMTCS 415 (430)
T ss_pred CCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCCceEEEeCCCCCceeeec
Confidence 9999988864311 1 112233443333333 333332 234455555566788888999999
Q ss_pred CCcceecccc
Q 048012 487 APRKKSVDDF 496 (616)
Q Consensus 487 ~d~~~~~wd~ 496 (616)
.|..+|+|--
T Consensus 416 dD~raRFWyr 425 (430)
T KOG0640|consen 416 DDFRARFWYR 425 (430)
T ss_pred ccceeeeeee
Confidence 9999999953
No 64
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.96 E-value=3.3e-29 Score=232.04 Aligned_cols=247 Identities=19% Similarity=0.346 Sum_probs=199.9
Q ss_pred ceEEecCCcccEEEEEECCCCCEEEEEEcCCcEEEEeCCCCccccccceecCCCCCCceEEEEecCCCCeEEEEeCCCeE
Q 048012 141 NEIVLKGHTKIVSALAVDHSGSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSDRFLCVTGSAQA 220 (616)
Q Consensus 141 ~~~~l~~H~~~V~~v~~sp~g~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~s~d~~v 220 (616)
...+|.||++.|.|+.|+ .+.|++||.|.+|+|||++++.. ......|...|..+.|+. .++++++.|.++
T Consensus 229 c~~~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~tge~-----l~tlihHceaVLhlrf~n--g~mvtcSkDrsi 299 (499)
T KOG0281|consen 229 CLKILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNTGEP-----LNTLIHHCEAVLHLRFSN--GYMVTCSKDRSI 299 (499)
T ss_pred HHHhhhcCCCcEEeeecc--ceEEEecCCCceEEEEeccCCch-----hhHHhhhcceeEEEEEeC--CEEEEecCCcee
Confidence 345789999999999996 45999999999999999998642 223335777899999974 589999999999
Q ss_pred EEEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEEEECCCccccceEEeeeccCCCCc
Q 048012 221 KIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPGRV 300 (616)
Q Consensus 221 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~ 300 (616)
.|||+....-. ...+.+.||...|+.+.|.. .++++++.|.+|++|++.+...+..+ .+|+-
T Consensus 300 aVWdm~sps~i---------t~rrVLvGHrAaVNvVdfd~---kyIVsASgDRTikvW~~st~efvRtl------~gHkR 361 (499)
T KOG0281|consen 300 AVWDMASPTDI---------TLRRVLVGHRAAVNVVDFDD---KYIVSASGDRTIKVWSTSTCEFVRTL------NGHKR 361 (499)
T ss_pred EEEeccCchHH---------HHHHHHhhhhhheeeecccc---ceEEEecCCceEEEEeccceeeehhh------hcccc
Confidence 99998865421 23556889999999999974 49999999999999999987766554 35666
Q ss_pred cEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCCCCCceeeecCCCCCeEEEEEcCCCCeEEEEecCCcEEEEeCCCCCCc
Q 048012 301 AVTTCAWDCDGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHSDDITALKFSSDGRILLSRSFDGSLKVWDLRKMKEP 380 (616)
Q Consensus 301 ~v~~~~~sp~g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~v~lwd~~~~~~~ 380 (616)
.|.|+.| .|+++++|+.|.+|++||+..| .++..+.+|..-|.+|.|. .+.+++|+.||+|++||+.....+
T Consensus 362 GIAClQY--r~rlvVSGSSDntIRlwdi~~G----~cLRvLeGHEeLvRciRFd--~krIVSGaYDGkikvWdl~aaldp 433 (499)
T KOG0281|consen 362 GIACLQY--RDRLVVSGSSDNTIRLWDIECG----ACLRVLEGHEELVRCIRFD--NKRIVSGAYDGKIKVWDLQAALDP 433 (499)
T ss_pred cceehhc--cCeEEEecCCCceEEEEecccc----HHHHHHhchHHhhhheeec--CceeeeccccceEEEEecccccCC
Confidence 7888877 5899999999999999999988 7899999999999999995 778999999999999999875443
Q ss_pred ce------EecCCCCCCcceeEEECCCCCEEEEeeccccccCCCceEEEEeCCCCce
Q 048012 381 LK------VFEDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREKLEL 431 (616)
Q Consensus 381 ~~------~~~~~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~~~~ 431 (616)
.. ......+.+.|..+.| |...|++++ .|.+|.|||..++-.
T Consensus 434 ra~~~~~Cl~~lv~hsgRVFrLQF--D~fqIvsss-------HddtILiWdFl~~~~ 481 (499)
T KOG0281|consen 434 RAPASTLCLRTLVEHSGRVFRLQF--DEFQIISSS-------HDDTILIWDFLNGPP 481 (499)
T ss_pred cccccchHHHhhhhccceeEEEee--cceEEEecc-------CCCeEEEEEcCCCCc
Confidence 11 1112234456888888 466778877 899999999877643
No 65
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.96 E-value=9.9e-29 Score=238.83 Aligned_cols=270 Identities=19% Similarity=0.261 Sum_probs=215.0
Q ss_pred ecCCCCCCceEEEEecC-CCCeEEEEeCCCeEEEEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEE
Q 048012 190 QLEPSEGHQVRNLSWSP-TSDRFLCVTGSAQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILT 268 (616)
Q Consensus 190 ~~~~~~~~~v~~l~~sp-~g~~l~~~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s 268 (616)
....+|...|.++.|.| .+.+|++++.|+.|+||++-... +.++++.+|...|..++|+.++ ..|++
T Consensus 208 ~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~-----------~~lrtf~gH~k~Vrd~~~s~~g-~~fLS 275 (503)
T KOG0282|consen 208 HNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDR-----------RCLRTFKGHRKPVRDASFNNCG-TSFLS 275 (503)
T ss_pred eeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCc-----------ceehhhhcchhhhhhhhccccC-Ceeee
Confidence 33446677899999999 88899999999999999987532 3478889999999999999988 58999
Q ss_pred EeCCCCEEEEECCCccccceEEeeeccCCCCccEEEEEECCCC-CeEEEEeCCCcEEEEeCCCCCCCCCceeeecCCCCC
Q 048012 269 SSEDGSLRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWDCDG-KCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHSDD 347 (616)
Q Consensus 269 ~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g-~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~h~~~ 347 (616)
++.|++|++||+.++++...+.... .++|+.|+|++ +.+++|+.|+.|+.||++++ ..++.+..|-+.
T Consensus 276 ~sfD~~lKlwDtETG~~~~~f~~~~-------~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~----kvvqeYd~hLg~ 344 (503)
T KOG0282|consen 276 ASFDRFLKLWDTETGQVLSRFHLDK-------VPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSG----KVVQEYDRHLGA 344 (503)
T ss_pred eecceeeeeeccccceEEEEEecCC-------CceeeecCCCCCcEEEEecCCCcEEEEeccch----HHHHHHHhhhhh
Confidence 9999999999999998876664322 68999999998 89999999999999999987 688899999999
Q ss_pred eEEEEEcCCCCeEEEEecCCcEEEEeCCCCCCcceEecCCCCCCcceeEEECCCCCEEEEeeccccccCCCceEEEEeCC
Q 048012 348 ITALKFSSDGRILLSRSFDGSLKVWDLRKMKEPLKVFEDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDRE 427 (616)
Q Consensus 348 V~~l~~spdg~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~ 427 (616)
|..|.|-++|+.+++.+.|++|+||+.+..- +++.+.. .......++..+|++.++++-+ .|+.|.||.+.
T Consensus 345 i~~i~F~~~g~rFissSDdks~riWe~~~~v-~ik~i~~-~~~hsmP~~~~~P~~~~~~aQs-------~dN~i~ifs~~ 415 (503)
T KOG0282|consen 345 ILDITFVDEGRRFISSSDDKSVRIWENRIPV-PIKNIAD-PEMHTMPCLTLHPNGKWFAAQS-------MDNYIAIFSTV 415 (503)
T ss_pred eeeeEEccCCceEeeeccCccEEEEEcCCCc-cchhhcc-hhhccCcceecCCCCCeehhhc-------cCceEEEEecc
Confidence 9999999999999999999999999998643 3333222 2334478899999999999998 89999999965
Q ss_pred CCceE---EEEec-CCCCCeEEEEEcCCCCcEEEEeccCCCCceEEEecc-------------------cCCC-CCcEEE
Q 048012 428 KLELV---SRVGI-SPACSVVQCAWHPKLNQIFATAGDKSQGGTHILYDP-------------------RLSE-RGALVC 483 (616)
Q Consensus 428 ~~~~~---~~~~~-~~~~~v~~~~~~p~~~~l~~~~~d~~~~~~~~v~~~-------------------~~s~-~g~~l~ 483 (616)
..-.+ ..+.. .-.+--..|.|+|+|.+|++|.+ ++.+.+|+. .|.| .-..||
T Consensus 416 ~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGds----dG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~Skva 491 (503)
T KOG0282|consen 416 PPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDS----DGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVEPSKVA 491 (503)
T ss_pred cccccCHhhhhcceeccCceeeEEEcCCCCeEEeecC----CccEEEeechhhhhhhccccCCcceEEEEecCCCcceeE
Confidence 33211 11211 11244677889999999988888 556666662 2333 234677
Q ss_pred EecCCcceeccc
Q 048012 484 VARAPRKKSVDD 495 (616)
Q Consensus 484 s~~~d~~~~~wd 495 (616)
+++.+|.|++|+
T Consensus 492 t~~w~G~Ikiwd 503 (503)
T KOG0282|consen 492 TCGWDGLIKIWD 503 (503)
T ss_pred ecccCceeEecC
Confidence 888888888886
No 66
>PTZ00420 coronin; Provisional
Probab=99.96 E-value=7.9e-27 Score=245.06 Aligned_cols=259 Identities=14% Similarity=0.173 Sum_probs=192.8
Q ss_pred EEcCCcEEEEeCCCCccccccceecCCCCCCceEEEEecCC-CCeEEEEeCCCeEEEEECCCCee-eeEeeCceeEeecc
Q 048012 167 GSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPT-SDRFLCVTGSAQAKIYDRDGLTL-GEFVKGDMYIRDLK 244 (616)
Q Consensus 167 gs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~-g~~l~~~s~d~~v~vwd~~~~~~-~~~~~~~~~~~~~~ 244 (616)
|+.++.|++|+.... ........|...|.+++|+|+ +.+|++++.|+.|+|||+..... ... ....+.
T Consensus 50 GG~~gvI~L~~~~r~-----~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~-----i~~p~~ 119 (568)
T PTZ00420 50 GGLIGAIRLENQMRK-----PPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKE-----IKDPQC 119 (568)
T ss_pred CCceeEEEeeecCCC-----ceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccc-----cccceE
Confidence 667889999987542 122233467889999999997 78999999999999999874321 000 001123
Q ss_pred cCCCcccceEEEEEcCCCCCEEEEEeCCCCEEEEECCCccccceEEeeeccCCCCccEEEEEECCCCCeEEEEeCCCcEE
Q 048012 245 NTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWDCDGKCIAGGIGDGSIQ 324 (616)
Q Consensus 245 ~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~g~~dg~I~ 324 (616)
.+.+|...|.+++|+|++..+|++++.|++|+|||+.++.....+. +...|.+++|+++|.+|++++.|+.|+
T Consensus 120 ~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-------~~~~V~SlswspdG~lLat~s~D~~Ir 192 (568)
T PTZ00420 120 ILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-------MPKKLSSLKWNIKGNLLSGTCVGKHMH 192 (568)
T ss_pred EeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-------cCCcEEEEEECCCCCEEEEEecCCEEE
Confidence 4678999999999999887677899999999999998765433221 123699999999999999999999999
Q ss_pred EEeCCCCCCCCCceeeecCCCCCeEE-----EEEcCCCCeEEEEecCC----cEEEEeCCCCCCcceEecCCCCCCccee
Q 048012 325 VWNLKPGWGSRPDIHVEKGHSDDITA-----LKFSSDGRILLSRSFDG----SLKVWDLRKMKEPLKVFEDLPNNYAQTN 395 (616)
Q Consensus 325 iwd~~~~~~~~~~~~~~~~h~~~V~~-----l~~spdg~~l~s~s~Dg----~v~lwd~~~~~~~~~~~~~~~~~~~v~~ 395 (616)
|||++++ ..+..+.+|.+.+.+ ..|++++.+|++++.|+ +|+|||+++...++..+........+..
T Consensus 193 IwD~Rsg----~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p 268 (568)
T PTZ00420 193 IIDPRKQ----EIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIP 268 (568)
T ss_pred EEECCCC----cEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEE
Confidence 9999976 566778899876543 34568999999988775 7999999987777766543333333334
Q ss_pred EEECCCCCEEEEeeccccccCCCceEEEEeCCCCceEEEEecCCCCCeEEEEEcCCCC
Q 048012 396 VAFSPDEQLFLTGTSVERESTTGGLLCFYDREKLELVSRVGISPACSVVQCAWHPKLN 453 (616)
Q Consensus 396 v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~ 453 (616)
....+++.++++|. .|+.|++|++..+.+...-...+..++..++|.|+..
T Consensus 269 ~~D~~tg~l~lsGk-------GD~tIr~~e~~~~~~~~l~~~~s~~p~~g~~f~Pkr~ 319 (568)
T PTZ00420 269 HYDESTGLIYLIGK-------GDGNCRYYQHSLGSIRKVNEYKSCSPFRSFGFLPKQI 319 (568)
T ss_pred eeeCCCCCEEEEEE-------CCCeEEEEEccCCcEEeecccccCCCccceEEccccc
Confidence 44456688999998 8999999999877543322333456788899999843
No 67
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=1.1e-27 Score=210.97 Aligned_cols=261 Identities=18% Similarity=0.279 Sum_probs=211.2
Q ss_pred CCCCCceEEEEecCCCCeEEEEeCCCeEEEEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCC
Q 048012 193 PSEGHQVRNLSWSPTSDRFLCVTGSAQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSED 272 (616)
Q Consensus 193 ~~~~~~v~~l~~sp~g~~l~~~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~D 272 (616)
..+.++|..+.|+-+|++.++++.|.+|++|+...+.+ +++..+|...|..++.+.++ ..|++|+.|
T Consensus 14 ~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~l------------iktYsghG~EVlD~~~s~Dn-skf~s~GgD 80 (307)
T KOG0316|consen 14 DCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGAL------------IKTYSGHGHEVLDAALSSDN-SKFASCGGD 80 (307)
T ss_pred cccccceEEEEEccCCCEEEEcCCCceEEeecccccce------------eeeecCCCceeeeccccccc-cccccCCCC
Confidence 45677899999999999999999999999999876654 56688999999999999887 489999999
Q ss_pred CCEEEEECCCccccceEEeeeccCCCCccEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCCCCCceeeecCCCCCeEEEE
Q 048012 273 GSLRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWDCDGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHSDDITALK 352 (616)
Q Consensus 273 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~ 352 (616)
..|.+||+.+++....+ ++|...|+.+.|+.+...+++|+.|.+|++||.++. ...+++++......|.+|.
T Consensus 81 k~v~vwDV~TGkv~Rr~------rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~--s~ePiQildea~D~V~Si~ 152 (307)
T KOG0316|consen 81 KAVQVWDVNTGKVDRRF------RGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSR--SFEPIQILDEAKDGVSSID 152 (307)
T ss_pred ceEEEEEcccCeeeeec------ccccceeeEEEecCcceEEEeccccceeEEEEcccC--CCCccchhhhhcCceeEEE
Confidence 99999999998876665 466678999999999999999999999999999987 6678888888888999999
Q ss_pred EcCCCCeEEEEecCCcEEEEeCCCCCCcceEecCCCCCCcceeEEECCCCCEEEEeeccccccCCCceEEEEeCCCCceE
Q 048012 353 FSSDGRILLSRSFDGSLKVWDLRKMKEPLKVFEDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREKLELV 432 (616)
Q Consensus 353 ~spdg~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~~~~~ 432 (616)
.+ +..|++|+.||+++.||+|.+....-. -..+|++++|++|++.+++++ .++.|++.|..+|+++
T Consensus 153 v~--~heIvaGS~DGtvRtydiR~G~l~sDy-----~g~pit~vs~s~d~nc~La~~-------l~stlrLlDk~tGklL 218 (307)
T KOG0316|consen 153 VA--EHEIVAGSVDGTVRTYDIRKGTLSSDY-----FGHPITSVSFSKDGNCSLASS-------LDSTLRLLDKETGKLL 218 (307)
T ss_pred ec--ccEEEeeccCCcEEEEEeecceeehhh-----cCCcceeEEecCCCCEEEEee-------ccceeeecccchhHHH
Confidence 87 778999999999999999976432211 234599999999999999999 8999999999999999
Q ss_pred EEEecCCC-CCeEEEEEcCCCCcEEEEeccCCCCceEEEecccCCCCCcEEEEecCCcceeccc
Q 048012 433 SRVGISPA-CSVVQCAWHPKLNQIFATAGDKSQGGTHILYDPRLSERGALVCVARAPRKKSVDD 495 (616)
Q Consensus 433 ~~~~~~~~-~~v~~~~~~p~~~~l~~~~~d~~~~~~~~v~~~~~s~~g~~l~s~~~d~~~~~wd 495 (616)
..+....+ .--..+.++.....+++++. ++.+.+|++. ++..+..-+....+.+.+
T Consensus 219 ~sYkGhkn~eykldc~l~qsdthV~sgSE----DG~Vy~wdLv---d~~~~sk~~~~~~v~v~d 275 (307)
T KOG0316|consen 219 KSYKGHKNMEYKLDCCLNQSDTHVFSGSE----DGKVYFWDLV---DETQISKLSVVSTVIVTD 275 (307)
T ss_pred HHhcccccceeeeeeeecccceeEEeccC----CceEEEEEec---cceeeeeeccCCceeEEe
Confidence 88865322 22345566666566666655 6677777775 444444444444443333
No 68
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.96 E-value=5.6e-28 Score=214.67 Aligned_cols=284 Identities=20% Similarity=0.295 Sum_probs=222.4
Q ss_pred EEecCCcccEEEEEECC---CCCEEEEEEcCCcEEEEeCCCCccccccceecCCCCCCceEEEEecCCCCeEEEEeCCCe
Q 048012 143 IVLKGHTKIVSALAVDH---SGSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSDRFLCVTGSAQ 219 (616)
Q Consensus 143 ~~l~~H~~~V~~v~~sp---~g~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~s~d~~ 219 (616)
++..||+.+|-.++|+| +|-+|++++.|+.-.+-+=+++ .+.-...+|.+.|++..++.+..+.++++.|-+
T Consensus 8 l~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tg-----dwigtfeghkgavw~~~l~~na~~aasaaadft 82 (334)
T KOG0278|consen 8 LTCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTG-----DWIGTFEGHKGAVWSATLNKNATRAASAAADFT 82 (334)
T ss_pred eEEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCC-----CcEEeeeccCcceeeeecCchhhhhhhhcccch
Confidence 46789999999999984 8899999999998777655443 344455678889999999999989999999999
Q ss_pred EEEEECCCC-eeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEEEECCCccccceEEeeeccCCC
Q 048012 220 AKIYDRDGL-TLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPG 298 (616)
Q Consensus 220 v~vwd~~~~-~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~ 298 (616)
.+|||.-++ ++. ...|..-|..++|+.+. +.|++|+.+..+||||++..+.... ...+|
T Consensus 83 akvw~a~tgdelh--------------sf~hkhivk~~af~~ds-~~lltgg~ekllrvfdln~p~App~-----E~~gh 142 (334)
T KOG0278|consen 83 AKVWDAVTGDELH--------------SFEHKHIVKAVAFSQDS-NYLLTGGQEKLLRVFDLNRPKAPPK-----EISGH 142 (334)
T ss_pred hhhhhhhhhhhhh--------------hhhhhheeeeEEecccc-hhhhccchHHHhhhhhccCCCCCch-----hhcCC
Confidence 999996543 332 23678889999999987 6899999999999999987554322 22467
Q ss_pred CccEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCCCCCceeeecCCCCCeEEEEEcCCCCeEEEEecCCcEEEEeCCCCC
Q 048012 299 RVAVTTCAWDCDGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHSDDITALKFSSDGRILLSRSFDGSLKVWDLRKMK 378 (616)
Q Consensus 299 ~~~v~~~~~sp~g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~v~lwd~~~~~ 378 (616)
...|..+.|....+.|++.+.|++||+||.+++ ..+..+. ....|+++.++++|++|.++ ..+.|++||..+.+
T Consensus 143 tg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTg----t~v~sL~-~~s~VtSlEvs~dG~ilTia-~gssV~Fwdaksf~ 216 (334)
T KOG0278|consen 143 TGGIRTVLWCHEDKCILSSADDKTVRLWDHRTG----TEVQSLE-FNSPVTSLEVSQDGRILTIA-YGSSVKFWDAKSFG 216 (334)
T ss_pred CCcceeEEEeccCceEEeeccCCceEEEEeccC----cEEEEEe-cCCCCcceeeccCCCEEEEe-cCceeEEecccccc
Confidence 778999999999999999999999999999988 4555554 34579999999999876654 46789999999865
Q ss_pred CcceEecCCCCCCcceeEEECCCCCEEEEeeccccccCCCceEEEEeCCCCceEEEEecCCCCCeEEEEEcCCCCcEEEE
Q 048012 379 EPLKVFEDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREKLELVSRVGISPACSVVQCAWHPKLNQIFAT 458 (616)
Q Consensus 379 ~~~~~~~~~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~ 458 (616)
. ++.+. ....|.+.+++|+...+++|+ .|..++.||..+++.+..+.-.|.++|.++.|+|+|...++|
T Consensus 217 ~-lKs~k---~P~nV~SASL~P~k~~fVaGg-------ed~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsG 285 (334)
T KOG0278|consen 217 L-LKSYK---MPCNVESASLHPKKEFFVAGG-------EDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASG 285 (334)
T ss_pred c-eeecc---CccccccccccCCCceEEecC-------cceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeecc
Confidence 3 33332 334499999999999999998 899999999999998877644466777777777765444444
Q ss_pred eccCCCCceEEEec
Q 048012 459 AGDKSQGGTHILYD 472 (616)
Q Consensus 459 ~~d~~~~~~~~v~~ 472 (616)
+. ++++++|.
T Consensus 286 SE----DGTirlWQ 295 (334)
T KOG0278|consen 286 SE----DGTIRLWQ 295 (334)
T ss_pred CC----CceEEEEE
Confidence 43 44444444
No 69
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.96 E-value=6.1e-27 Score=210.18 Aligned_cols=297 Identities=21% Similarity=0.235 Sum_probs=224.5
Q ss_pred EEecCCcccEEEEEECCCCCEEEEEEcCCcEEEEeCCCCccccccceecCCCCCCceEEEEecCCCCeEEEEeCCCeEEE
Q 048012 143 IVLKGHTKIVSALAVDHSGSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSDRFLCVTGSAQAKI 222 (616)
Q Consensus 143 ~~l~~H~~~V~~v~~sp~g~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~s~d~~v~v 222 (616)
+.|+||..+++.|.|+.+|.+|++|+.|.++.||---++. ..-...+|.+.|+|+..+-+.++|++++.|.+++|
T Consensus 4 i~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGe-----rlGty~GHtGavW~~Did~~s~~liTGSAD~t~kL 78 (327)
T KOG0643|consen 4 ILLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGE-----RLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKL 78 (327)
T ss_pred cccccCccccceEEecCCCcEEEEecCCCCceEEEecCCc-----eeeeecCCCceEEEEEecCCcceeeeccccceeEE
Confidence 5789999999999999999999999999999999764432 12233468889999999999999999999999999
Q ss_pred EECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeC-----CCCEEEEECCCcccc----ceEEeee
Q 048012 223 YDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSE-----DGSLRIWDVNEFKSQ----KQVIKPK 293 (616)
Q Consensus 223 wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~-----Dg~v~iwd~~~~~~~----~~~~~~~ 293 (616)
||+.+++.... -.....|..+.|++.+ ++++.+.. .+.|.++|++..... ..+...
T Consensus 79 WDv~tGk~la~-------------~k~~~~Vk~~~F~~~g-n~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI- 143 (327)
T KOG0643|consen 79 WDVETGKQLAT-------------WKTNSPVKRVDFSFGG-NLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKI- 143 (327)
T ss_pred EEcCCCcEEEE-------------eecCCeeEEEeeccCC-cEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEe-
Confidence 99997764222 2345678999999977 46655543 467999999853311 111111
Q ss_pred ccCCCCccEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCCCCCceeeecCCCCCeEEEEEcCCCCeEEEEecCCcEEEEe
Q 048012 294 LARPGRVAVTTCAWDCDGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHSDDITALKFSSDGRILLSRSFDGSLKVWD 373 (616)
Q Consensus 294 ~~~~~~~~v~~~~~sp~g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~v~lwd 373 (616)
......++.+.|.|-+.+|++|..||.|.+||++++. ..+.....|...|+.|.+++|..++++++.|.+-++||
T Consensus 144 --~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~---~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D 218 (327)
T KOG0643|consen 144 --PTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGK---ELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVD 218 (327)
T ss_pred --cCCccceeeeeecccCCEEEEecCCCcEEEEEcccCc---eeeechhhhccccccccccCCcceEEecccCccceeee
Confidence 1222478999999999999999999999999999863 56667788999999999999999999999999999999
Q ss_pred CCCCCCcceEecCCCCCCcceeEEECCCCCEEEEeeccccc-----cCCCc--eEEEEeCCCCceEEEEecCCCCCeEEE
Q 048012 374 LRKMKEPLKVFEDLPNNYAQTNVAFSPDEQLFLTGTSVERE-----STTGG--LLCFYDREKLELVSRVGISPACSVVQC 446 (616)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~gs~~~~~-----~~~dg--~i~iwd~~~~~~~~~~~~~~~~~v~~~ 446 (616)
.++.. .++.+ ....+|.+.+++|-...++.|+..... ....| .-++|++-.-+.+..++. |-++|+++
T Consensus 219 ~~tl~-v~Kty---~te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkG-HFGPINsv 293 (327)
T KOG0643|consen 219 VRTLE-VLKTY---TTERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKG-HFGPINSV 293 (327)
T ss_pred cccee-eEEEe---eecccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccc-cccCccee
Confidence 99743 23333 345679999999988888877632110 00011 123444444455566654 77999999
Q ss_pred EEcCCCCcEEEEeccCCCCceEEEecc
Q 048012 447 AWHPKLNQIFATAGDKSQGGTHILYDP 473 (616)
Q Consensus 447 ~~~p~~~~l~~~~~d~~~~~~~~v~~~ 473 (616)
+|||+|....+|+. ++.+++...
T Consensus 294 AfhPdGksYsSGGE----DG~VR~h~F 316 (327)
T KOG0643|consen 294 AFHPDGKSYSSGGE----DGYVRLHHF 316 (327)
T ss_pred EECCCCcccccCCC----CceEEEEEe
Confidence 99999998888887 667777643
No 70
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=1e-26 Score=234.43 Aligned_cols=275 Identities=16% Similarity=0.258 Sum_probs=212.1
Q ss_pred EEEECCCCCEEEEEEcCCcEEEEeCCCCccccccceecCCCCCCceEEEEecCCCCeEEEEeCCCeEEEEECCCCeeeeE
Q 048012 154 ALAVDHSGSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSDRFLCVTGSAQAKIYDRDGLTLGEF 233 (616)
Q Consensus 154 ~v~~sp~g~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~s~d~~v~vwd~~~~~~~~~ 233 (616)
-+.|+ ..+.||.|. ...|++|+...+. ...+...+...|+++.|+++|.+|++|..+|.|.|||......
T Consensus 182 lldWs-s~n~laVal-g~~vylW~~~s~~-----v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~--- 251 (484)
T KOG0305|consen 182 LLDWS-SANVLAVAL-GQSVYLWSASSGS-----VTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKK--- 251 (484)
T ss_pred Hhhcc-cCCeEEEEe-cceEEEEecCCCc-----eEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhccc---
Confidence 34566 345666654 4579999987653 2223333367799999999999999999999999999886542
Q ss_pred eeCceeEeecccCCC-cccceEEEEEcCCCCCEEEEEeCCCCEEEEECCCccccceEEeeeccCCCCccEEEEEECCCCC
Q 048012 234 VKGDMYIRDLKNTKG-HICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWDCDGK 312 (616)
Q Consensus 234 ~~~~~~~~~~~~~~~-h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~ 312 (616)
+..+.+ |...|.+++|.. ..+.+|+.|+.|..+|++..+..... ..+|+..|..+.|+++++
T Consensus 252 ---------~~~~~~~h~~rvg~laW~~---~~lssGsr~~~I~~~dvR~~~~~~~~-----~~~H~qeVCgLkws~d~~ 314 (484)
T KOG0305|consen 252 ---------TRTLRGSHASRVGSLAWNS---SVLSSGSRDGKILNHDVRISQHVVST-----LQGHRQEVCGLKWSPDGN 314 (484)
T ss_pred ---------cccccCCcCceeEEEeccC---ceEEEecCCCcEEEEEEecchhhhhh-----hhcccceeeeeEECCCCC
Confidence 445666 999999999983 58999999999999999876554442 246667899999999999
Q ss_pred eEEEEeCCCcEEEEeCCCCCCCCCceeeecCCCCCeEEEEEcC-CCCeEEEEe--cCCcEEEEeCCCCCCcceEecCCCC
Q 048012 313 CIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHSDDITALKFSS-DGRILLSRS--FDGSLKVWDLRKMKEPLKVFEDLPN 389 (616)
Q Consensus 313 ~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp-dg~~l~s~s--~Dg~v~lwd~~~~~~~~~~~~~~~~ 389 (616)
+||+|+.|+.|.|||.... .....+..|...|.+++|+| ...+||+|+ .|++|++||+.++.. + .....
T Consensus 315 ~lASGgnDN~~~Iwd~~~~----~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~-i---~~vdt 386 (484)
T KOG0305|consen 315 QLASGGNDNVVFIWDGLSP----EPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGAR-I---DSVDT 386 (484)
T ss_pred eeccCCCccceEeccCCCc----cccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcE-e---ccccc
Confidence 9999999999999999643 67778889999999999999 677899876 699999999996543 2 23345
Q ss_pred CCcceeEEECCCCCEEEEeeccccccCCCceEEEEeCCCCceEEEEecCCCCCeEEEEEcCCCCcEEEEeccCCCCceEE
Q 048012 390 NYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREKLELVSRVGISPACSVVQCAWHPKLNQIFATAGDKSQGGTHI 469 (616)
Q Consensus 390 ~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~~~~~~~ 469 (616)
...|++|.|++..+-|+++. +..++.|.||+..+.+.+..+.. |...|..++|+|++..|+++++ +.+++
T Consensus 387 gsQVcsL~Wsk~~kEi~sth-----G~s~n~i~lw~~ps~~~~~~l~g-H~~RVl~la~SPdg~~i~t~a~----DETlr 456 (484)
T KOG0305|consen 387 GSQVCSLIWSKKYKELLSTH-----GYSENQITLWKYPSMKLVAELLG-HTSRVLYLALSPDGETIVTGAA----DETLR 456 (484)
T ss_pred CCceeeEEEcCCCCEEEEec-----CCCCCcEEEEeccccceeeeecC-CcceeEEEEECCCCCEEEEecc----cCcEE
Confidence 56799999999987777765 33677999999999888777753 5566666666666555555554 34445
Q ss_pred Eecc
Q 048012 470 LYDP 473 (616)
Q Consensus 470 v~~~ 473 (616)
+|.+
T Consensus 457 fw~~ 460 (484)
T KOG0305|consen 457 FWNL 460 (484)
T ss_pred eccc
Confidence 5443
No 71
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=1.8e-27 Score=236.11 Aligned_cols=264 Identities=17% Similarity=0.256 Sum_probs=219.3
Q ss_pred CCCceEEEEecCCCCeEEEEeCCCeEEEEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCC
Q 048012 195 EGHQVRNLSWSPTSDRFLCVTGSAQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGS 274 (616)
Q Consensus 195 ~~~~v~~l~~sp~g~~l~~~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~ 274 (616)
+...|.++.|+|....++++-.+|.|.||+.++..+. +.+.-..-+|.+..|-.. ++++++|+.|..
T Consensus 12 rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmV------------ksfeV~~~PvRa~kfiaR-knWiv~GsDD~~ 78 (794)
T KOG0276|consen 12 RSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMV------------KSFEVSEVPVRAAKFIAR-KNWIVTGSDDMQ 78 (794)
T ss_pred cCCceeeeecCCCCceEEEeeecCeeEEEecccceee------------eeeeecccchhhheeeec-cceEEEecCCce
Confidence 5667999999999999999999999999999988753 334445567888888874 479999999999
Q ss_pred EEEEECCCccccceEEeeeccCCCCccEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCCCCCceeeecCCCCCeEEEEEc
Q 048012 275 LRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWDCDGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHSDDITALKFS 354 (616)
Q Consensus 275 v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~s 354 (616)
||||+.++...++.+ ..|...|.|++.+|.--++++++.|-+|++||....+ .+.+++.+|...|.+|+|+
T Consensus 79 IrVfnynt~ekV~~F------eAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~w---a~~qtfeGH~HyVMqv~fn 149 (794)
T KOG0276|consen 79 IRVFNYNTGEKVKTF------EAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEW---ACEQTFEGHEHYVMQVAFN 149 (794)
T ss_pred EEEEecccceeeEEe------eccccceeeeeecCCCCeEEecCCccEEEEeeccCce---eeeeEEcCcceEEEEEEec
Confidence 999999998877666 3566689999999999999999999999999999865 7889999999999999999
Q ss_pred C-CCCeEEEEecCCcEEEEeCCCCCCcceEecCCCCCCcceeEEECCC--CCEEEEeeccccccCCCceEEEEeCCCCce
Q 048012 355 S-DGRILLSRSFDGSLKVWDLRKMKEPLKVFEDLPNNYAQTNVAFSPD--EQLFLTGTSVERESTTGGLLCFYDREKLEL 431 (616)
Q Consensus 355 p-dg~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~v~~v~fspd--g~~l~~gs~~~~~~~~dg~i~iwd~~~~~~ 431 (616)
| |.+.+++++.|++|++|.+.. ..+..++.+|..+ |.|+.|-+- ..||++|+ .|..|+|||.++..|
T Consensus 150 PkD~ntFaS~sLDrTVKVWslgs-~~~nfTl~gHekG--VN~Vdyy~~gdkpylIsga-------DD~tiKvWDyQtk~C 219 (794)
T KOG0276|consen 150 PKDPNTFASASLDRTVKVWSLGS-PHPNFTLEGHEKG--VNCVDYYTGGDKPYLISGA-------DDLTIKVWDYQTKSC 219 (794)
T ss_pred CCCccceeeeeccccEEEEEcCC-CCCceeeeccccC--cceEEeccCCCcceEEecC-------CCceEEEeecchHHH
Confidence 9 778999999999999999985 4566777776544 999999874 46999999 999999999999999
Q ss_pred EEEEecCCCCCeEEEEEcCCCCcEEEEeccC---------------CCCceEEEecccCCCCCcEEEEecCCcce
Q 048012 432 VSRVGISPACSVVQCAWHPKLNQIFATAGDK---------------SQGGTHILYDPRLSERGALVCVARAPRKK 491 (616)
Q Consensus 432 ~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~---------------~~~~~~~v~~~~~s~~g~~l~s~~~d~~~ 491 (616)
++++.. |...|..+.|||....|++|+.|+ ++-+..++|+++..+.+..++.|...+.+
T Consensus 220 V~TLeG-Ht~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn~gleRvW~I~~~k~~~~i~vG~Deg~i 293 (794)
T KOG0276|consen 220 VQTLEG-HTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLNYGLERVWCIAAHKGDGKIAVGFDEGSV 293 (794)
T ss_pred HHHhhc-ccccceEEEecCCCcEEEEecCCccEEEecCcceehhhhhhcCCceEEEEeecCCCCeEEEeccCCcE
Confidence 999985 777899999999999999999854 12223344555555555566666544443
No 72
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.96 E-value=4e-28 Score=222.87 Aligned_cols=287 Identities=19% Similarity=0.311 Sum_probs=227.3
Q ss_pred ecCCCCCCceEEEEecCCCCeEEEEeCCCeEEEEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEE
Q 048012 190 QLEPSEGHQVRNLSWSPTSDRFLCVTGSAQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTS 269 (616)
Q Consensus 190 ~~~~~~~~~v~~l~~sp~g~~l~~~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~ 269 (616)
.+..+...-+.|..|||||++|++++-||.|.||+..++++..-.+. ....++.-+...|.|+.|+.+. .++++|
T Consensus 207 ~IKFg~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkY----QAqd~fMMmd~aVlci~FSRDs-EMlAsG 281 (508)
T KOG0275|consen 207 SIKFGQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKY----QAQDNFMMMDDAVLCISFSRDS-EMLASG 281 (508)
T ss_pred heecccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhh----hhhcceeecccceEEEeecccH-HHhhcc
Confidence 33334555689999999999999999999999999887765322111 1122345678899999999987 699999
Q ss_pred eCCCCEEEEECCCccccceEEeeeccCCCCccEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCCCCCceeeecCCCCCeE
Q 048012 270 SEDGSLRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWDCDGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHSDDIT 349 (616)
Q Consensus 270 s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~ 349 (616)
+.||.|++|.+.++.+...+.+ .|...|+|+.|+.|+..+++++.|.+++|--+.+| +++..+.+|.+.|+
T Consensus 282 sqDGkIKvWri~tG~ClRrFdr-----AHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSG----K~LKEfrGHsSyvn 352 (508)
T KOG0275|consen 282 SQDGKIKVWRIETGQCLRRFDR-----AHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSG----KCLKEFRGHSSYVN 352 (508)
T ss_pred CcCCcEEEEEEecchHHHHhhh-----hhccCeeEEEEccCcchhhcccccceEEEeccccc----hhHHHhcCcccccc
Confidence 9999999999999999887753 44558999999999999999999999999999988 78899999999999
Q ss_pred EEEEcCCCCeEEEEecCCcEEEEeCCCCCCcceEecCCCCCCcceeEEECCC-CCEEEEeeccccccCCCceEEEEeCCC
Q 048012 350 ALKFSSDGRILLSRSFDGSLKVWDLRKMKEPLKVFEDLPNNYAQTNVAFSPD-EQLFLTGTSVERESTTGGLLCFYDREK 428 (616)
Q Consensus 350 ~l~~spdg~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~v~~v~fspd-g~~l~~gs~~~~~~~~dg~i~iwd~~~ 428 (616)
.+.|.+||.++++++.||+|++|+..+ ..++.++.......+|.++..-|. -..+++|. ..++|+|.++.
T Consensus 353 ~a~ft~dG~~iisaSsDgtvkvW~~Kt-teC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCN-------rsntv~imn~q- 423 (508)
T KOG0275|consen 353 EATFTDDGHHIISASSDGTVKVWHGKT-TECLSTFKPLGTDYPVNSVILLPKNPEHFIVCN-------RSNTVYIMNMQ- 423 (508)
T ss_pred ceEEcCCCCeEEEecCCccEEEecCcc-hhhhhhccCCCCcccceeEEEcCCCCceEEEEc-------CCCeEEEEecc-
Confidence 999999999999999999999999986 567888888888888999988875 45677776 78899999974
Q ss_pred CceEEEEecC--CCCCeEEEEEcCCCCcEEEEeccCCCCceEEEecccCCCCCcEEEEecCCcceecccccCCceeeCCC
Q 048012 429 LELVSRVGIS--PACSVVQCAWHPKLNQIFATAGDKSQGGTHILYDPRLSERGALVCVARAPRKKSVDDFEVAPVIHNPH 506 (616)
Q Consensus 429 ~~~~~~~~~~--~~~~v~~~~~~p~~~~l~~~~~d~~~~~~~~v~~~~~s~~g~~l~s~~~d~~~~~wd~~~~~~~~~p~ 506 (616)
|+.++.+... ..+...++..+|.|.++++.+.| +....+.+ .+|...+++.+.+-.+-.+...||
T Consensus 424 GQvVrsfsSGkREgGdFi~~~lSpkGewiYcigED----~vlYCF~~---------~sG~LE~tl~VhEkdvIGl~HHPH 490 (508)
T KOG0275|consen 424 GQVVRSFSSGKREGGDFINAILSPKGEWIYCIGED----GVLYCFSV---------LSGKLERTLPVHEKDVIGLTHHPH 490 (508)
T ss_pred ceEEeeeccCCccCCceEEEEecCCCcEEEEEccC----cEEEEEEe---------ecCceeeeeecccccccccccCcc
Confidence 6777777432 34678899999999999999884 33333332 234445555555555556666676
Q ss_pred CCCccc
Q 048012 507 ALPLFR 512 (616)
Q Consensus 507 ~~~l~~ 512 (616)
...+.+
T Consensus 491 qNllAs 496 (508)
T KOG0275|consen 491 QNLLAS 496 (508)
T ss_pred cchhhh
Confidence 655543
No 73
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.96 E-value=3.6e-26 Score=258.24 Aligned_cols=275 Identities=16% Similarity=0.228 Sum_probs=206.2
Q ss_pred CCcEEEEeCCCCccccccceecCCCCCCceEEEEecCCCCeEEEEeCCCeEEEEECCCCeeeeEeeCceeEeecccCCCc
Q 048012 170 DYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSDRFLCVTGSAQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGH 249 (616)
Q Consensus 170 Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~h 249 (616)
+|.+++|++............-...|...|.+++|+++|++|++++.|+.|+||++....... .........+ .+
T Consensus 457 ~gl~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~----~~~~~~~~~~-~~ 531 (793)
T PLN00181 457 EGLCKYLSFSKLRVKADLKQGDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDG----RDIHYPVVEL-AS 531 (793)
T ss_pred hhhhhhhcccceEEEEeeccccccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccc----cccccceEEe-cc
Confidence 677888887754321111111122367789999999999999999999999999976421000 0000001111 23
Q ss_pred ccceEEEEEcCCCCCEEEEEeCCCCEEEEECCCccccceEEeeeccCCCCccEEEEEECC-CCCeEEEEeCCCcEEEEeC
Q 048012 250 ICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWDC-DGKCIAGGIGDGSIQVWNL 328 (616)
Q Consensus 250 ~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~g~~l~~g~~dg~I~iwd~ 328 (616)
...|.+++|++....+|++++.||+|+|||+.+.+....+ ..|...|++++|+| ++.+|++|+.||+|++||+
T Consensus 532 ~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~------~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~ 605 (793)
T PLN00181 532 RSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEM------KEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSI 605 (793)
T ss_pred cCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEe------cCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEEC
Confidence 4578999999876679999999999999999876443332 34666899999997 7899999999999999999
Q ss_pred CCCCCCCCceeeecCCCCCeEEEEEc-CCCCeEEEEecCCcEEEEeCCCCCCcceEecCCCCCCcceeEEECCCCCEEEE
Q 048012 329 KPGWGSRPDIHVEKGHSDDITALKFS-SDGRILLSRSFDGSLKVWDLRKMKEPLKVFEDLPNNYAQTNVAFSPDEQLFLT 407 (616)
Q Consensus 329 ~~~~~~~~~~~~~~~h~~~V~~l~~s-pdg~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~ 407 (616)
+++ ..+..+..| ..|.++.|+ +++.+|++|+.||+|++||+++...++..+.. +...|+++.|. ++.+|++
T Consensus 606 ~~~----~~~~~~~~~-~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~--h~~~V~~v~f~-~~~~lvs 677 (793)
T PLN00181 606 NQG----VSIGTIKTK-ANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIG--HSKTVSYVRFV-DSSTLVS 677 (793)
T ss_pred CCC----cEEEEEecC-CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecC--CCCCEEEEEEe-CCCEEEE
Confidence 875 455555544 579999995 57999999999999999999976655555554 44569999997 7889999
Q ss_pred eeccccccCCCceEEEEeCCCC------ceEEEEecCCCCCeEEEEEcCCCCcEEEEeccCCCCceEEEecccC
Q 048012 408 GTSVERESTTGGLLCFYDREKL------ELVSRVGISPACSVVQCAWHPKLNQIFATAGDKSQGGTHILYDPRL 475 (616)
Q Consensus 408 gs~~~~~~~~dg~i~iwd~~~~------~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~~~~~~~v~~~~~ 475 (616)
++ .|+.|+|||+... .++..+.. |...+..+.|++++++|++++. ++.+.+|+...
T Consensus 678 ~s-------~D~~ikiWd~~~~~~~~~~~~l~~~~g-h~~~i~~v~~s~~~~~lasgs~----D~~v~iw~~~~ 739 (793)
T PLN00181 678 SS-------TDNTLKLWDLSMSISGINETPLHSFMG-HTNVKNFVGLSVSDGYIATGSE----TNEVFVYHKAF 739 (793)
T ss_pred EE-------CCCEEEEEeCCCCccccCCcceEEEcC-CCCCeeEEEEcCCCCEEEEEeC----CCEEEEEECCC
Confidence 99 8999999998743 45666653 5677888999999888888887 77899998754
No 74
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.96 E-value=1.3e-26 Score=211.72 Aligned_cols=277 Identities=18% Similarity=0.252 Sum_probs=211.1
Q ss_pred cccEEEEEECC-CCCEEEEEEcCCcEEEEeCCCCccccccceecCCCCCCceEEEEecCCCCeEEEEeCCCeEEEEECCC
Q 048012 149 TKIVSALAVDH-SGSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSDRFLCVTGSAQAKIYDRDG 227 (616)
Q Consensus 149 ~~~V~~v~~sp-~g~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~s~d~~v~vwd~~~ 227 (616)
.+.|.+|+||| ...+|+.||.|++||+|+++..... .......+..+|.+++|+.+|..+++++.|+++++||+..
T Consensus 27 ~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~---~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S 103 (347)
T KOG0647|consen 27 EDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQL---VPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLAS 103 (347)
T ss_pred ccchheeEeccccCceEEecccCCceEEEEEecCCcc---cchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccC
Confidence 56799999999 5567779999999999999863221 1133445788999999999999999999999999999998
Q ss_pred CeeeeEeeCceeEeecccCCCcccceEEEEEcCCC-CCEEEEEeCCCCEEEEECCCccccceEEeeeccCCCCccEEEEE
Q 048012 228 LTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKT-KETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPGRVAVTTCA 306 (616)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~-~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~ 306 (616)
+++.. ...|...|.++.|-+.. -..|+|||.|.+|++||++....+..+..+. .+.++.
T Consensus 104 ~Q~~~-------------v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPe-------RvYa~D 163 (347)
T KOG0647|consen 104 GQVSQ-------------VAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPE-------RVYAAD 163 (347)
T ss_pred CCeee-------------eeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccc-------eeeehh
Confidence 87533 46799999999997743 2379999999999999999766555443322 345443
Q ss_pred ECCCCCeEEEEeCCCcEEEEeCCCCCCCCCceeeecCCCCCeEEEEEcCCCCeEEEEecCCcEEEEeCCCCCC-cceEec
Q 048012 307 WDCDGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHSDDITALKFSSDGRILLSRSFDGSLKVWDLRKMKE-PLKVFE 385 (616)
Q Consensus 307 ~sp~g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~v~lwd~~~~~~-~~~~~~ 385 (616)
. -..+++++..+..|.+|+++.+... .......-.-.++||+..+|....+.|+-+|.+.|..+..... .--.+.
T Consensus 164 v--~~pm~vVata~r~i~vynL~n~~te--~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFk 239 (347)
T KOG0647|consen 164 V--LYPMAVVATAERHIAVYNLENPPTE--FKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFK 239 (347)
T ss_pred c--cCceeEEEecCCcEEEEEcCCCcch--hhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEE
Confidence 3 3457889999999999999875211 1111112234589999999998889999999999998876421 111122
Q ss_pred CCC-------CCCcceeEEECCCCCEEEEeeccccccCCCceEEEEeCCCCceEEEEecCCCCCeEEEEEcCCCCcEEEE
Q 048012 386 DLP-------NNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREKLELVSRVGISPACSVVQCAWHPKLNQIFAT 458 (616)
Q Consensus 386 ~~~-------~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~ 458 (616)
-|. .-+.|.+|+|+|....|++++ .||++.+||......+..... +..+|+++.|+.+|..++.+
T Consensus 240 CHR~~~~~~~~VYaVNsi~FhP~hgtlvTaG-------sDGtf~FWDkdar~kLk~s~~-~~qpItcc~fn~~G~ifaYA 311 (347)
T KOG0647|consen 240 CHRSTNSVNDDVYAVNSIAFHPVHGTLVTAG-------SDGTFSFWDKDARTKLKTSET-HPQPITCCSFNRNGSIFAYA 311 (347)
T ss_pred EeccCCCCCCceEEecceEeecccceEEEec-------CCceEEEecchhhhhhhccCc-CCCccceeEecCCCCEEEEE
Confidence 221 246789999999999999999 899999999887777766653 66789999999999988877
Q ss_pred ec
Q 048012 459 AG 460 (616)
Q Consensus 459 ~~ 460 (616)
.+
T Consensus 312 ~g 313 (347)
T KOG0647|consen 312 LG 313 (347)
T ss_pred ee
Confidence 76
No 75
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.96 E-value=2e-26 Score=219.75 Aligned_cols=284 Identities=20% Similarity=0.306 Sum_probs=229.1
Q ss_pred cccEEEEEECCCCCEEEEEEcCCcEEEEeCCCCccccccceecCCCCCCceEEEEecCCCCeEEEEeCCCeEEEEECCCC
Q 048012 149 TKIVSALAVDHSGSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSDRFLCVTGSAQAKIYDRDGL 228 (616)
Q Consensus 149 ~~~V~~v~~sp~g~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~s~d~~v~vwd~~~~ 228 (616)
...|+++...+....++||+.|..+.++|.... .+.....+|...|+.+.|+++...+++++.|..|+||.....
T Consensus 219 ~pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~-----q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~ 293 (506)
T KOG0289|consen 219 TPGITALDIIPSSSKILTGGEDKTAVLFDKPSN-----QILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLS 293 (506)
T ss_pred CCCeeEEeecCCCCcceecCCCCceEEEecchh-----hhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccc
Confidence 467888888888789999999999999998763 344455677778999999999999999999999999998754
Q ss_pred eeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEEEECCCccccceEEeeeccCCCCccEEEEEEC
Q 048012 229 TLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWD 308 (616)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 308 (616)
.. ......|...|+.+..||.+ .+|++++.|++..+.|++++.+....... .....+++.+|+
T Consensus 294 s~------------~~~~~~h~~~V~~ls~h~tg-eYllsAs~d~~w~Fsd~~~g~~lt~vs~~----~s~v~~ts~~fH 356 (506)
T KOG0289|consen 294 SE------------PTSSRPHEEPVTGLSLHPTG-EYLLSASNDGTWAFSDISSGSQLTVVSDE----TSDVEYTSAAFH 356 (506)
T ss_pred cC------------ccccccccccceeeeeccCC-cEEEEecCCceEEEEEccCCcEEEEEeec----cccceeEEeeEc
Confidence 42 33467899999999999987 59999999999999999987765544321 334479999999
Q ss_pred CCCCeEEEEeCCCcEEEEeCCCCCCCCCceeeecCCCCCeEEEEEcCCCCeEEEEecCCcEEEEeCCCCCCcceEecCCC
Q 048012 309 CDGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHSDDITALKFSSDGRILLSRSFDGSLKVWDLRKMKEPLKVFEDLP 388 (616)
Q Consensus 309 p~g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~ 388 (616)
|||.+|.+|..||.|+|||+.+. ..+..+.+|.++|..|+|+.+|.+|++++.|+.|++||+|+.+. ++.+. ..
T Consensus 357 pDgLifgtgt~d~~vkiwdlks~----~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n-~kt~~-l~ 430 (506)
T KOG0289|consen 357 PDGLIFGTGTPDGVVKIWDLKSQ----TNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKN-FKTIQ-LD 430 (506)
T ss_pred CCceEEeccCCCceEEEEEcCCc----cccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcc-cceee-cc
Confidence 99999999999999999999976 57888999999999999999999999999999999999998653 44443 23
Q ss_pred CCCcceeEEECCCCCEEEEeeccccccCCCceEEEEeCC--CCceEEEEecCCCCCeEEEEEcCCCCcEEEEeccCCCCc
Q 048012 389 NNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDRE--KLELVSRVGISPACSVVQCAWHPKLNQIFATAGDKSQGG 466 (616)
Q Consensus 389 ~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~--~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~~~~ 466 (616)
....+.++.|...|++|+.++ .+=.|++++-. .+.++..+.. +.+..+.+.|.....++++++. +.
T Consensus 431 ~~~~v~s~~fD~SGt~L~~~g-------~~l~Vy~~~k~~k~W~~~~~~~~-~sg~st~v~Fg~~aq~l~s~sm----d~ 498 (506)
T KOG0289|consen 431 EKKEVNSLSFDQSGTYLGIAG-------SDLQVYICKKKTKSWTEIKELAD-HSGLSTGVRFGEHAQYLASTSM----DA 498 (506)
T ss_pred ccccceeEEEcCCCCeEEeec-------ceeEEEEEecccccceeeehhhh-cccccceeeecccceEEeeccc----hh
Confidence 445699999999999999998 67677777633 4556655543 3456777788777777776665 44
Q ss_pred eEEEec
Q 048012 467 THILYD 472 (616)
Q Consensus 467 ~~~v~~ 472 (616)
..+++.
T Consensus 499 ~l~~~a 504 (506)
T KOG0289|consen 499 ILRLYA 504 (506)
T ss_pred heEEee
Confidence 455543
No 76
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.95 E-value=1.2e-26 Score=225.58 Aligned_cols=284 Identities=18% Similarity=0.286 Sum_probs=201.0
Q ss_pred CCCceEEEEecCCCCeEEEEeCCCeEEEEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCC
Q 048012 195 EGHQVRNLSWSPTSDRFLCVTGSAQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGS 274 (616)
Q Consensus 195 ~~~~v~~l~~sp~g~~l~~~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~ 274 (616)
+...|.++++.|.|.+|++|+.|..|++||+.+....- .+.+.+.. .-...|+++.|++.+ ..|++.+....
T Consensus 166 gtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~-----~~fr~l~P--~E~h~i~sl~ys~Tg-~~iLvvsg~aq 237 (641)
T KOG0772|consen 166 GTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASM-----RSFRQLQP--CETHQINSLQYSVTG-DQILVVSGSAQ 237 (641)
T ss_pred CceEEEEeeecCCCceeeeccccceEEEEecccccccc-----hhhhccCc--ccccccceeeecCCC-CeEEEEecCcc
Confidence 44458999999999999999999999999998764211 01122222 234468999999987 47777777889
Q ss_pred EEEEECCCccccce-----EEe-eeccCCCCccEEEEEECCCC-CeEEEEeCCCcEEEEeCCCCCCCCCceeeec--CCC
Q 048012 275 LRIWDVNEFKSQKQ-----VIK-PKLARPGRVAVTTCAWDCDG-KCIAGGIGDGSIQVWNLKPGWGSRPDIHVEK--GHS 345 (616)
Q Consensus 275 v~iwd~~~~~~~~~-----~~~-~~~~~~~~~~v~~~~~sp~g-~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~--~h~ 345 (616)
.+|+|-........ ++. .....+|...++|.+|+|.. ..+++++.||++||||+.....+..++.... +..
T Consensus 238 akl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~R 317 (641)
T KOG0772|consen 238 AKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKR 317 (641)
T ss_pred eeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcc
Confidence 99999654332221 111 12345777889999999965 4788999999999999987643333333332 233
Q ss_pred CCeEEEEEcCCCCeEEEEecCCcEEEEeCCCCCC--cceEecCCCCCCcceeEEECCCCCEEEEeeccccccCCCceEEE
Q 048012 346 DDITALKFSSDGRILLSRSFDGSLKVWDLRKMKE--PLKVFEDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCF 423 (616)
Q Consensus 346 ~~V~~l~~spdg~~l~s~s~Dg~v~lwd~~~~~~--~~~~~~~~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~i 423 (616)
-.+++++|++||++||+|+.||.|.+|+.++... ...+-..|.....|+||.||+||++|++-+ .|+.+++
T Consensus 318 v~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg-------~D~tLKv 390 (641)
T KOG0772|consen 318 VPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRG-------FDDTLKV 390 (641)
T ss_pred cCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhcc-------CCCceee
Confidence 4589999999999999999999999999865432 233334555555799999999999999998 8999999
Q ss_pred EeCCCCceEEEE--ecCCCCCeEEEEEcCCCCcEEEEeccC--CCCceEEEec-------------------ccCCCCCc
Q 048012 424 YDREKLELVSRV--GISPACSVVQCAWHPKLNQIFATAGDK--SQGGTHILYD-------------------PRLSERGA 480 (616)
Q Consensus 424 wd~~~~~~~~~~--~~~~~~~v~~~~~~p~~~~l~~~~~d~--~~~~~~~v~~-------------------~~~s~~g~ 480 (616)
||++..+..... .+.....-+.|+|+|+...|++|.+-. ...+...+|+ +.|.|.-.
T Consensus 391 WDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~WhpkLN 470 (641)
T KOG0772|consen 391 WDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHPKLN 470 (641)
T ss_pred eeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEEEeecchhh
Confidence 999987543222 222334568899999999999987743 2233445554 33445555
Q ss_pred EEEEecCCcceec
Q 048012 481 LVCVARAPRKKSV 493 (616)
Q Consensus 481 ~l~s~~~d~~~~~ 493 (616)
.|..++.||.+++
T Consensus 471 Qi~~gsgdG~~~v 483 (641)
T KOG0772|consen 471 QIFAGSGDGTAHV 483 (641)
T ss_pred heeeecCCCceEE
Confidence 5555555655543
No 77
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=2.7e-27 Score=236.25 Aligned_cols=288 Identities=18% Similarity=0.294 Sum_probs=219.2
Q ss_pred CcccEE---EEEEC-CCCCEEEEEEcCCcEEEEeCCCCcccc-ccceecCCCCCCceEEEEecCCCCeEEEEeCCCeEEE
Q 048012 148 HTKIVS---ALAVD-HSGSRVLSGSYDYTVRMYDFQGMNSRL-QSFRQLEPSEGHQVRNLSWSPTSDRFLCVTGSAQAKI 222 (616)
Q Consensus 148 H~~~V~---~v~~s-p~g~~lasgs~Dg~i~iwd~~~~~~~~-~~~~~~~~~~~~~v~~l~~sp~g~~l~~~s~d~~v~v 222 (616)
|...|. ++..+ |.+++|+|||.||.|++|++....... .........|...|..+....+++.|++++.|-+|++
T Consensus 20 n~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~ 99 (735)
T KOG0308|consen 20 NRNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKV 99 (735)
T ss_pred ccccccchhhccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEE
Confidence 444555 44555 456779999999999999986532211 1122233457778999999999999999999999999
Q ss_pred EECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEEEECCCccc--c---ceEEeeeccCC
Q 048012 223 YDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKS--Q---KQVIKPKLARP 297 (616)
Q Consensus 223 wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~--~---~~~~~~~~~~~ 297 (616)
|+...... .++.++..|..-|.|+++-.....++++|+.|+.|.|||++++.. . ..+.......+
T Consensus 100 W~~~~~~~----------~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG 169 (735)
T KOG0308|consen 100 WNAHKDNT----------FCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSG 169 (735)
T ss_pred eecccCcc----------hhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCC
Confidence 99875431 247778999999999999333447999999999999999997632 1 11222222336
Q ss_pred CCccEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCCCCCceeeecCCCCCeEEEEEcCCCCeEEEEecCCcEEEEeCCCC
Q 048012 298 GRVAVTTCAWDCDGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHSDDITALKFSSDGRILLSRSFDGSLKVWDLRKM 377 (616)
Q Consensus 298 ~~~~v~~~~~sp~g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~v~lwd~~~~ 377 (616)
++..|++++.++.|..|++|+..+.|++||.++. ..+..+.+|+..|..|..+.||+.++++|.||+|+|||+..
T Consensus 170 ~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~----~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgq- 244 (735)
T KOG0308|consen 170 PKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTC----KKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQ- 244 (735)
T ss_pred CccceeeeecCCcceEEEecCcccceEEeccccc----cceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccc-
Confidence 6778999999999999999999999999999976 57777889999999999999999999999999999999985
Q ss_pred CCcceEecCCCCCCcceeEEECCCCCEEEEeeccccccCCCceEEEEeCCCCceEEEEecCCCCCeEEEEEcCCCCcEEE
Q 048012 378 KEPLKVFEDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREKLELVSRVGISPACSVVQCAWHPKLNQIFA 457 (616)
Q Consensus 378 ~~~~~~~~~~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~ 457 (616)
++++.++..|... |+++..+|+-.++++|+ .||.|+.-|+.+......+ +....+|..+..+...+.+-+
T Consensus 245 QrCl~T~~vH~e~--VWaL~~~~sf~~vYsG~-------rd~~i~~Tdl~n~~~~tli-ck~daPv~~l~~~~~~~~~Wv 314 (735)
T KOG0308|consen 245 QRCLATYIVHKEG--VWALQSSPSFTHVYSGG-------RDGNIYRTDLRNPAKSTLI-CKEDAPVLKLHLHEHDNSVWV 314 (735)
T ss_pred cceeeeEEeccCc--eEEEeeCCCcceEEecC-------CCCcEEecccCCchhheEe-ecCCCchhhhhhccccCCcee
Confidence 5667777665544 99999999999999999 8999999999885322222 233445555555544444333
Q ss_pred Eec
Q 048012 458 TAG 460 (616)
Q Consensus 458 ~~~ 460 (616)
++.
T Consensus 315 tTt 317 (735)
T KOG0308|consen 315 TTT 317 (735)
T ss_pred eec
Confidence 333
No 78
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.95 E-value=3.4e-26 Score=220.14 Aligned_cols=283 Identities=20% Similarity=0.295 Sum_probs=230.5
Q ss_pred EEecCCcccEEEEEECCCCCEEEEEEcCCcEEEEeCCCCcccc---cc-------ceecC---CCCCCceEEEEecCCCC
Q 048012 143 IVLKGHTKIVSALAVDHSGSRVLSGSYDYTVRMYDFQGMNSRL---QS-------FRQLE---PSEGHQVRNLSWSPTSD 209 (616)
Q Consensus 143 ~~l~~H~~~V~~v~~sp~g~~lasgs~Dg~i~iwd~~~~~~~~---~~-------~~~~~---~~~~~~v~~l~~sp~g~ 209 (616)
..+..|.-+|.||+++|++.++++++.|++|.-|++.++.... .. ..... ..|...+.+++.|++|+
T Consensus 136 ~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgk 215 (479)
T KOG0299|consen 136 RVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGK 215 (479)
T ss_pred eeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCc
Confidence 5678899999999999999999999999999999987654220 00 00011 14555799999999999
Q ss_pred eEEEEeCCCeEEEEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEEEECCCccccceE
Q 048012 210 RFLCVTGSAQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQV 289 (616)
Q Consensus 210 ~l~~~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~~~ 289 (616)
+|++++.|..|.||+..+.+. ++.+.+|...|.+++|--. .+.+++++.|++|++|++.....+..+
T Consensus 216 ylatgg~d~~v~Iw~~~t~eh------------v~~~~ghr~~V~~L~fr~g-t~~lys~s~Drsvkvw~~~~~s~vetl 282 (479)
T KOG0299|consen 216 YLATGGRDRHVQIWDCDTLEH------------VKVFKGHRGAVSSLAFRKG-TSELYSASADRSVKVWSIDQLSYVETL 282 (479)
T ss_pred EEEecCCCceEEEecCcccch------------hhcccccccceeeeeeecC-ccceeeeecCCceEEEehhHhHHHHHH
Confidence 999999999999999997763 5568999999999999874 468999999999999999876555444
Q ss_pred EeeeccCCCCccEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCCCCCceeeecCCCCCeEEEEEcCCCCeEEEEecCCcE
Q 048012 290 IKPKLARPGRVAVTTCAWDCDGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHSDDITALKFSSDGRILLSRSFDGSL 369 (616)
Q Consensus 290 ~~~~~~~~~~~~v~~~~~sp~g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~v 369 (616)
.+|+..|..+....-++.+-+|+.|+++++|++.. ....++.+|.+.+-|++|-. ...|++|+.+|.|
T Consensus 283 ------yGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~e-----esqlifrg~~~sidcv~~In-~~HfvsGSdnG~I 350 (479)
T KOG0299|consen 283 ------YGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPE-----ESQLIFRGGEGSIDCVAFIN-DEHFVSGSDNGSI 350 (479)
T ss_pred ------hCCccceeeechhcccceEEeccccceeEEEeccc-----cceeeeeCCCCCeeeEEEec-ccceeeccCCceE
Confidence 46777899998888888999999999999999964 35567889999999999974 4589999999999
Q ss_pred EEEeCCCCCCcceEec-CC---------CCCCcceeEEECCCCCEEEEeeccccccCCCceEEEEeCCCC----ceEEEE
Q 048012 370 KVWDLRKMKEPLKVFE-DL---------PNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREKL----ELVSRV 435 (616)
Q Consensus 370 ~lwd~~~~~~~~~~~~-~~---------~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~~----~~~~~~ 435 (616)
.||++.+.+ ++.+.. .| .+..+|++++..|...++++|+ .+|.|++|-+..+ +++..+
T Consensus 351 aLWs~~KKk-plf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS-------~~G~vrLW~i~~g~r~i~~l~~l 422 (479)
T KOG0299|consen 351 ALWSLLKKK-PLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGS-------WSGCVRLWKIEDGLRAINLLYSL 422 (479)
T ss_pred EEeeecccC-ceeEeeccccccCCccccccccceeeeEecccCceEEecC-------CCCceEEEEecCCccccceeeec
Confidence 999998643 333322 11 1234899999999999999999 8999999998876 455555
Q ss_pred ecCCCCCeEEEEEcCCCCcEEEEec
Q 048012 436 GISPACSVVQCAWHPKLNQIFATAG 460 (616)
Q Consensus 436 ~~~~~~~v~~~~~~p~~~~l~~~~~ 460 (616)
. -.+-|++++|++++..|+++.+
T Consensus 423 s--~~GfVNsl~f~~sgk~ivagiG 445 (479)
T KOG0299|consen 423 S--LVGFVNSLAFSNSGKRIVAGIG 445 (479)
T ss_pred c--cccEEEEEEEccCCCEEEEecc
Confidence 4 4577999999999999999986
No 79
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.95 E-value=4.6e-28 Score=215.19 Aligned_cols=270 Identities=17% Similarity=0.278 Sum_probs=224.5
Q ss_pred CCCCCceEEEEecC---CCCeEEEEeCCCeEEEEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEE
Q 048012 193 PSEGHQVRNLSWSP---TSDRFLCVTGSAQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTS 269 (616)
Q Consensus 193 ~~~~~~v~~l~~sp---~g~~l~~~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~ 269 (616)
.+|..+|..++||| +|-+|++++.|+.-.+-+-+++.. +-++.||.+.|+....+.+. ...+++
T Consensus 11 ~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdw------------igtfeghkgavw~~~l~~na-~~aasa 77 (334)
T KOG0278|consen 11 HGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDW------------IGTFEGHKGAVWSATLNKNA-TRAASA 77 (334)
T ss_pred cCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCc------------EEeeeccCcceeeeecCchh-hhhhhh
Confidence 35667899999986 788899999999887766665543 34478999999999998765 578899
Q ss_pred eCCCCEEEEECCCccccceEEeeeccCCCCccEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCCCCCceeeecCCCCCeE
Q 048012 270 SEDGSLRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWDCDGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHSDDIT 349 (616)
Q Consensus 270 s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~ 349 (616)
+.|-+-+|||.-++..+..+ .|...|.+|+|+.+.++|++|+.+..+||||++.. ......+.+|.+.|.
T Consensus 78 aadftakvw~a~tgdelhsf-------~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p---~App~E~~ghtg~Ir 147 (334)
T KOG0278|consen 78 AADFTAKVWDAVTGDELHSF-------EHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRP---KAPPKEISGHTGGIR 147 (334)
T ss_pred cccchhhhhhhhhhhhhhhh-------hhhheeeeEEecccchhhhccchHHHhhhhhccCC---CCCchhhcCCCCcce
Confidence 99999999999888766655 23337899999999999999999999999999874 356667889999999
Q ss_pred EEEEcCCCCeEEEEecCCcEEEEeCCCCCCcceEecCCCCCCcceeEEECCCCCEEEEeeccccccCCCceEEEEeCCCC
Q 048012 350 ALKFSSDGRILLSRSFDGSLKVWDLRKMKEPLKVFEDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREKL 429 (616)
Q Consensus 350 ~l~~spdg~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~~ 429 (616)
.+.|....+.|++.+.|++||+||.+++.. ++.+. ....|+++.++++|++|.++ ..+.|.+||..+.
T Consensus 148 ~v~wc~eD~~iLSSadd~tVRLWD~rTgt~-v~sL~---~~s~VtSlEvs~dG~ilTia--------~gssV~Fwdaksf 215 (334)
T KOG0278|consen 148 TVLWCHEDKCILSSADDKTVRLWDHRTGTE-VQSLE---FNSPVTSLEVSQDGRILTIA--------YGSSVKFWDAKSF 215 (334)
T ss_pred eEEEeccCceEEeeccCCceEEEEeccCcE-EEEEe---cCCCCcceeeccCCCEEEEe--------cCceeEEeccccc
Confidence 999999999999999999999999998654 34433 33459999999999999988 5788999999999
Q ss_pred ceEEEEecCCCCCeEEEEEcCCCCcEEEEeccC----------------CCCceEEEecccCCCCCcEEEEecCCcceec
Q 048012 430 ELVSRVGISPACSVVQCAWHPKLNQIFATAGDK----------------SQGGTHILYDPRLSERGALVCVARAPRKKSV 493 (616)
Q Consensus 430 ~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~----------------~~~~~~~v~~~~~s~~g~~l~s~~~d~~~~~ 493 (616)
.++..+.++ ..|.+...+|+...+++|+.|. ..+|..-|-.+.|||+|.+.++++.|+++++
T Consensus 216 ~~lKs~k~P--~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirl 293 (334)
T KOG0278|consen 216 GLLKSYKMP--CNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRL 293 (334)
T ss_pred cceeeccCc--cccccccccCCCceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCceEEE
Confidence 999999764 5699999999987777777654 1355556667899999999999999999999
Q ss_pred ccccCC
Q 048012 494 DDFEVA 499 (616)
Q Consensus 494 wd~~~~ 499 (616)
|.+.+.
T Consensus 294 WQt~~~ 299 (334)
T KOG0278|consen 294 WQTTPG 299 (334)
T ss_pred EEecCC
Confidence 987543
No 80
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.95 E-value=4.1e-26 Score=229.39 Aligned_cols=349 Identities=19% Similarity=0.256 Sum_probs=264.7
Q ss_pred CCcceEEecCCcccEEEEEECCCCC---EEEEEEcCCcEEEEeCCCCc--------------------cccc------cc
Q 048012 138 PMSNEIVLKGHTKIVSALAVDHSGS---RVLSGSYDYTVRMYDFQGMN--------------------SRLQ------SF 188 (616)
Q Consensus 138 p~~~~~~l~~H~~~V~~v~~sp~g~---~lasgs~Dg~i~iwd~~~~~--------------------~~~~------~~ 188 (616)
.+.....|.||++.|.+++|...+. +|||+|.|..||||.+.-.. .... .+
T Consensus 180 ~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~ 259 (764)
T KOG1063|consen 180 SFARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISF 259 (764)
T ss_pred ceeEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEeh
Confidence 3455678999999999999987554 89999999999999874322 0000 11
Q ss_pred eecCCCCCCceEEEEecCCCCeEEEEeCCCeEEEEECCCCe-eeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEE
Q 048012 189 RQLEPSEGHQVRNLSWSPTSDRFLCVTGSAQAKIYDRDGLT-LGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETIL 267 (616)
Q Consensus 189 ~~~~~~~~~~v~~l~~sp~g~~l~~~s~d~~v~vwd~~~~~-~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~ 267 (616)
..+..+|...|+++.|+|.+..|++++.|.++.||..+... ++... ..+-.+.|...+...+.|+|++ +.++
T Consensus 260 eall~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~------vRlGe~gg~a~GF~g~lw~~n~-~~ii 332 (764)
T KOG1063|consen 260 EALLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDV------VRLGEVGGSAGGFWGGLWSPNS-NVII 332 (764)
T ss_pred hhhhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEE------EEeecccccccceeeEEEcCCC-CEEE
Confidence 23445788899999999999999999999999999877542 11110 1122334667789999999987 6899
Q ss_pred EEeCCCCEEEEECCCccccceEEeeeccCCCCccEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCCCCCceeeecCCCCC
Q 048012 268 TSSEDGSLRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWDCDGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHSDD 347 (616)
Q Consensus 268 s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~h~~~ 347 (616)
+-+.-|..++|-..+.. .........+|-..|+.++|+|.|.+|++.+.|.+-|||-.-........+..-+-|.-.
T Consensus 333 ~~g~~Gg~hlWkt~d~~---~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyD 409 (764)
T KOG1063|consen 333 AHGRTGGFHLWKTKDKT---FWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYD 409 (764)
T ss_pred EecccCcEEEEeccCcc---ceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeeccccccccc
Confidence 99999999999833211 112222335777799999999999999999999999999754221122344455678889
Q ss_pred eEEEEEcCCCCeEEEEecCCcEEEEeCCCC-------------------------------CCcce------------Ee
Q 048012 348 ITALKFSSDGRILLSRSFDGSLKVWDLRKM-------------------------------KEPLK------------VF 384 (616)
Q Consensus 348 V~~l~~spdg~~l~s~s~Dg~v~lwd~~~~-------------------------------~~~~~------------~~ 384 (616)
++|++|-+....+++|.....+|+|+.-.. .++.. ..
T Consensus 410 l~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~ 489 (764)
T KOG1063|consen 410 LTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCA 489 (764)
T ss_pred ceeeehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceee
Confidence 999999987677888888888999986310 00000 00
Q ss_pred cC------------------------------CCCCCcceeEEECCCCCEEEEeeccccccCCCceEEEEeCCCCceEEE
Q 048012 385 ED------------------------------LPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREKLELVSR 434 (616)
Q Consensus 385 ~~------------------------------~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~~~~~~~ 434 (616)
+. ..|.+.|++++.+|++++||+++... ......|+||+..+...++.
T Consensus 490 et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~--~~ehAvI~lw~t~~W~~~~~ 567 (764)
T KOG1063|consen 490 ETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSS--LKEHAVIRLWNTANWLQVQE 567 (764)
T ss_pred ecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhC--CccceEEEEEeccchhhhhe
Confidence 00 01678899999999999999998321 11456799999999998887
Q ss_pred EecCCCCCeEEEEEcCCCCcEEEEeccC-------------------CCCceEEEecccCCCCCcEEEEecCCcceeccc
Q 048012 435 VGISPACSVVQCAWHPKLNQIFATAGDK-------------------SQGGTHILYDPRLSERGALVCVARAPRKKSVDD 495 (616)
Q Consensus 435 ~~~~~~~~v~~~~~~p~~~~l~~~~~d~-------------------~~~~~~~v~~~~~s~~g~~l~s~~~d~~~~~wd 495 (616)
+.. |.-.|+.++|+|++.+|++.+.|+ ...|+.+||+..|+|++.+++|++.|++|++|.
T Consensus 568 L~~-HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~ 646 (764)
T KOG1063|consen 568 LEG-HSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWE 646 (764)
T ss_pred ecc-cceEEEEEEECCCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEe
Confidence 765 778899999999999999999998 468999999999999999999999999999999
Q ss_pred ccCC
Q 048012 496 FEVA 499 (616)
Q Consensus 496 ~~~~ 499 (616)
....
T Consensus 647 ~~~~ 650 (764)
T KOG1063|consen 647 EPDL 650 (764)
T ss_pred ccCc
Confidence 8654
No 81
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.95 E-value=7.2e-28 Score=224.72 Aligned_cols=283 Identities=19% Similarity=0.240 Sum_probs=216.5
Q ss_pred EecCCcccEEEEEECCCC-CEEEEEEcCCcEEEEeCCCCccccccceecCCCCCCceEEEEecCCCCeEEEEeCCCeEEE
Q 048012 144 VLKGHTKIVSALAVDHSG-SRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSDRFLCVTGSAQAKI 222 (616)
Q Consensus 144 ~l~~H~~~V~~v~~sp~g-~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~s~d~~v~v 222 (616)
.|.||...|.|++=+|.. ..+|+|+.||.|+|||+..-. .......|.+.|..|++.. ..+++++.|.+|+.
T Consensus 61 ~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~-----~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~ 133 (433)
T KOG0268|consen 61 SLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRE-----CIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQ 133 (433)
T ss_pred hccccccccchhhcCcchhhhhhccccCceEEEEehhhhh-----hhheeecccCceeeEEecc--cceEEecCCcceee
Confidence 568999999999999987 789999999999999997632 2223345777899999987 67899999999999
Q ss_pred EECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEEEECCCccccceEEeeeccCCCCccE
Q 048012 223 YDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPGRVAV 302 (616)
Q Consensus 223 wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v 302 (616)
|-+++..+..+ .-...+..+.-+-.+ ..++||+.+ |-|||......+..+... -..|
T Consensus 134 wk~~~~p~~ti--------------lg~s~~~gIdh~~~~-~~FaTcGe~--i~IWD~~R~~Pv~smswG------~Dti 190 (433)
T KOG0268|consen 134 WKIDGPPLHTI--------------LGKSVYLGIDHHRKN-SVFATCGEQ--IDIWDEQRDNPVSSMSWG------ADSI 190 (433)
T ss_pred eeccCCcceee--------------ecccccccccccccc-ccccccCce--eeecccccCCccceeecC------CCce
Confidence 99887432211 112334444444433 588998864 899999766555554322 2268
Q ss_pred EEEEECCCCC-eEEEEeCCCcEEEEeCCCCCCCCCceeeecCCCCCeEEEEEcCCCCeEEEEecCCcEEEEeCCCCCCcc
Q 048012 303 TTCAWDCDGK-CIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHSDDITALKFSSDGRILLSRSFDGSLKVWDLRKMKEPL 381 (616)
Q Consensus 303 ~~~~~sp~g~-~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~v~lwd~~~~~~~~ 381 (616)
.++.|+|... +|+++..|++|.|||++.+....+.+.. ..-+.|+|+|.+-.+++++.|..++.||++....++
T Consensus 191 ~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~-----mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~ 265 (433)
T KOG0268|consen 191 SSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVILT-----MRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPL 265 (433)
T ss_pred eEEecCCCcchheeeeccCCceEEEecccCCccceeeee-----ccccceecCccccceeeccccccceehhhhhhcccc
Confidence 9999999655 5667779999999999987422222222 245689999999999999999999999999999999
Q ss_pred eEecCCCCCCcceeEEECCCCCEEEEeeccccccCCCceEEEEeCCCCceEEEEecCCCCCeEEEEEcCCCCcEEEEecc
Q 048012 382 KVFEDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREKLELVSRVGISPACSVVQCAWHPKLNQIFATAGD 461 (616)
Q Consensus 382 ~~~~~~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d 461 (616)
.++.+|. ..|.+|.|||.|+-+++|+ .|.+|+||.+..+.--..+.......|.++.|+.+..+|++|+.
T Consensus 266 ~v~~dhv--sAV~dVdfsptG~Efvsgs-------yDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSd- 335 (433)
T KOG0268|consen 266 NVHKDHV--SAVMDVDFSPTGQEFVSGS-------YDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSD- 335 (433)
T ss_pred hhhcccc--eeEEEeccCCCcchhcccc-------ccceEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCC-
Confidence 9887754 5699999999999999999 89999999998876544443333456889999998888887776
Q ss_pred CCCCceEEEeccc
Q 048012 462 KSQGGTHILYDPR 474 (616)
Q Consensus 462 ~~~~~~~~v~~~~ 474 (616)
++.+++|-..
T Consensus 336 ---d~nvRlWka~ 345 (433)
T KOG0268|consen 336 ---DGNVRLWKAK 345 (433)
T ss_pred ---Ccceeeeecc
Confidence 6677777654
No 82
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.95 E-value=1.8e-26 Score=231.89 Aligned_cols=325 Identities=17% Similarity=0.227 Sum_probs=238.9
Q ss_pred EEEEEECCCCCEEEEEEcCCcEEEEeCCCCccc--c----------ccceecCC-------CCCCceEEEEecCCCCeEE
Q 048012 152 VSALAVDHSGSRVLSGSYDYTVRMYDFQGMNSR--L----------QSFRQLEP-------SEGHQVRNLSWSPTSDRFL 212 (616)
Q Consensus 152 V~~v~~sp~g~~lasgs~Dg~i~iwd~~~~~~~--~----------~~~~~~~~-------~~~~~v~~l~~sp~g~~l~ 212 (616)
.+||+++ .++|++|+.+|.||||+-.+..-. + .......+ ..--...++.|++..+.|.
T Consensus 263 AnCIcVs--~r~I~cgCa~g~vrlFnp~tL~y~~Tlpr~halg~d~a~~~q~~~~~s~~~~a~fPD~IA~~Fdet~~kls 340 (1080)
T KOG1408|consen 263 ANCICVS--SRLIACGCAKGMVRLFNPETLDYAGTLPRSHALGSDTANLSQPEPKNSESSPAIFPDAIACQFDETTDKLS 340 (1080)
T ss_pred cceeeee--cceEEEeeccceeeecCcchhhhccccccccccccchhhcccccccccccCcccCCceeEEEecCCCceEE
Confidence 4456654 569999999999999986542210 0 00000000 0001256789999999999
Q ss_pred EEeCCCeEEEEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCC----------CCEEEEEeCCCCEEEEECCC
Q 048012 213 CVTGSAQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKT----------KETILTSSEDGSLRIWDVNE 282 (616)
Q Consensus 213 ~~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~----------~~~l~s~s~Dg~v~iwd~~~ 282 (616)
+...|..++|||+....... ....+..|...|+.+.-.|-+ ...|+||+.|++||+||+..
T Consensus 341 cVYndhSlYvWDvrD~~kvg---------k~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ 411 (1080)
T KOG1408|consen 341 CVYNDHSLYVWDVRDVNKVG---------KCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAF 411 (1080)
T ss_pred EEEcCceEEEEecccccccc---------ceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeeccc
Confidence 99999999999987432110 011234566666666544410 12599999999999999865
Q ss_pred ccccceEE---------------------ee----------eccCCCCccEEEEEECCCCCeEEEEeCCCcEEEEeCCCC
Q 048012 283 FKSQKQVI---------------------KP----------KLARPGRVAVTTCAWDCDGKCIAGGIGDGSIQVWNLKPG 331 (616)
Q Consensus 283 ~~~~~~~~---------------------~~----------~~~~~~~~~v~~~~~sp~g~~l~~g~~dg~I~iwd~~~~ 331 (616)
......+. .. ......+..+.+++.+|+|++||+|..-|+|++|++...
T Consensus 412 ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l 491 (1080)
T KOG1408|consen 412 CTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQEL 491 (1080)
T ss_pred ccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEEEehhh
Confidence 21111000 00 001123457999999999999999999999999999865
Q ss_pred CCCCCceeeecCCCCCeEEEEEcC---CCCeEEEEecCCcEEEEeCCCCCCcceEecCCC--------------------
Q 048012 332 WGSRPDIHVEKGHSDDITALKFSS---DGRILLSRSFDGSLKVWDLRKMKEPLKVFEDLP-------------------- 388 (616)
Q Consensus 332 ~~~~~~~~~~~~h~~~V~~l~~sp---dg~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~-------------------- 388 (616)
.....+.+|...|.|+.|+. ..++||+++.|.-|.|||+.....+++++..|.
T Consensus 492 ----~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~Misc 567 (1080)
T KOG1408|consen 492 ----EYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISC 567 (1080)
T ss_pred ----hhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEec
Confidence 56778899999999999986 457999999999999999875444444443322
Q ss_pred ---------------------------CCCcceeEEECCCCCEEEEeeccccccCCCceEEEEeCCCCceEEEEecCC--
Q 048012 389 ---------------------------NNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREKLELVSRVGISP-- 439 (616)
Q Consensus 389 ---------------------------~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~-- 439 (616)
....+..++..|..+++++++ .|..|+|||+.+++..+.++.++
T Consensus 568 GADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~c-------QDrnirif~i~sgKq~k~FKgs~~~ 640 (1080)
T KOG1408|consen 568 GADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVC-------QDRNIRIFDIESGKQVKSFKGSRDH 640 (1080)
T ss_pred cCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEe-------cccceEEEeccccceeeeecccccC
Confidence 122355677778888888888 89999999999999999998754
Q ss_pred CCCeEEEEEcCCCCcEEEEeccC---------------CCCceEEEecccCCCCCcEEEEecCCcceecccccC
Q 048012 440 ACSVVQCAWHPKLNQIFATAGDK---------------SQGGTHILYDPRLSERGALVCVARAPRKKSVDDFEV 498 (616)
Q Consensus 440 ~~~v~~~~~~p~~~~l~~~~~d~---------------~~~~~~~v~~~~~s~~g~~l~s~~~d~~~~~wd~~~ 498 (616)
.+..+.+...|.+.+|++++.|+ ..||.-.|..+.|++|-+.|++.+.|+.|.||.+..
T Consensus 641 eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 641 EGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLNDCKHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred CCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhcCcchheeeeeecccchhheeecCCceEEEEECch
Confidence 47899999999999999999987 357777888899999999999999999999999854
No 83
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=2.6e-27 Score=224.25 Aligned_cols=275 Identities=17% Similarity=0.201 Sum_probs=209.5
Q ss_pred cCCCCCCceEEEEecCCCCeEEEEeCCCeEEEEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEe
Q 048012 191 LEPSEGHQVRNLSWSPTSDRFLCVTGSAQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSS 270 (616)
Q Consensus 191 ~~~~~~~~v~~l~~sp~g~~l~~~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s 270 (616)
+...|...|+-+.||++|++|++++.|.+..||.+..... +.-.+++.+|..+|..+.|+||+ ++|++|+
T Consensus 219 il~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~---------~kl~~tlvgh~~~V~yi~wSPDd-ryLlaCg 288 (519)
T KOG0293|consen 219 ILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVH---------FKLKKTLVGHSQPVSYIMWSPDD-RYLLACG 288 (519)
T ss_pred hHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcc---------eeeeeeeecccCceEEEEECCCC-CeEEecC
Confidence 3445777899999999999999999999999999764332 13356788999999999999988 5899999
Q ss_pred CCCCEEEEECCCccccceEEeeeccCCCCccEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCCCCCceeeecCCC-CCeE
Q 048012 271 EDGSLRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWDCDGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHS-DDIT 349 (616)
Q Consensus 271 ~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~h~-~~V~ 349 (616)
.|..+++||+.++.....+... +...+.+++|.|||..+++|+.|++|..||+... ....+.+-. ..|.
T Consensus 289 ~~e~~~lwDv~tgd~~~~y~~~-----~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn-----~~~~W~gvr~~~v~ 358 (519)
T KOG0293|consen 289 FDEVLSLWDVDTGDLRHLYPSG-----LGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGN-----ILGNWEGVRDPKVH 358 (519)
T ss_pred chHheeeccCCcchhhhhcccC-----cCCCcceeEEccCCceeEecCCCCcEEEecCCcc-----hhhcccccccceeE
Confidence 9999999999998776655332 2347899999999999999999999999999864 344444433 4599
Q ss_pred EEEEcCCCCeEEEEecCCcEEEEeCCCCCCcceEecCCCCCCcceeEEECCCCCEEEEeeccccccCCCceEEEEeCCCC
Q 048012 350 ALKFSSDGRILLSRSFDGSLKVWDLRKMKEPLKVFEDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREKL 429 (616)
Q Consensus 350 ~l~~spdg~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~~ 429 (616)
+++.++||+++++.+.|..|++|+..... ....+ ....+|+++++|.|++++++.- .+..|++||++..
T Consensus 359 dlait~Dgk~vl~v~~d~~i~l~~~e~~~-dr~li---se~~~its~~iS~d~k~~LvnL-------~~qei~LWDl~e~ 427 (519)
T KOG0293|consen 359 DLAITYDGKYVLLVTVDKKIRLYNREARV-DRGLI---SEEQPITSFSISKDGKLALVNL-------QDQEIHLWDLEEN 427 (519)
T ss_pred EEEEcCCCcEEEEEecccceeeechhhhh-hhccc---cccCceeEEEEcCCCcEEEEEc-------ccCeeEEeecchh
Confidence 99999999999999999999999987532 22222 2334599999999999999988 8999999999988
Q ss_pred ceEEEEecCCC-CCeEEEEEcCCC-CcEEEEeccC---------------CCCceEEEecccCCC-CCcEEEEecCCcce
Q 048012 430 ELVSRVGISPA-CSVVQCAWHPKL-NQIFATAGDK---------------SQGGTHILYDPRLSE-RGALVCVARAPRKK 491 (616)
Q Consensus 430 ~~~~~~~~~~~-~~v~~~~~~p~~-~~l~~~~~d~---------------~~~~~~~v~~~~~s~-~g~~l~s~~~d~~~ 491 (616)
..++++..... .-++.-+|--.. ..|++|+.|. +.||...|..++++| +-.++|+++.|++|
T Consensus 428 ~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtI 507 (519)
T KOG0293|consen 428 KLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTI 507 (519)
T ss_pred hHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCCCHHHhhccCCCCeE
Confidence 88877754322 234444555433 4555555432 234444444466666 45677888888888
Q ss_pred ecccc
Q 048012 492 SVDDF 496 (616)
Q Consensus 492 ~~wd~ 496 (616)
|||..
T Consensus 508 RIWg~ 512 (519)
T KOG0293|consen 508 RIWGP 512 (519)
T ss_pred EEecC
Confidence 88865
No 84
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.95 E-value=9.4e-27 Score=246.15 Aligned_cols=305 Identities=18% Similarity=0.244 Sum_probs=227.7
Q ss_pred ecCCcccEEEEEECCCCCEEEEEE--cCCcEEEEeCCCCccc-------cccceecCCCCCCceEEEEecCCCCeEEEEe
Q 048012 145 LKGHTKIVSALAVDHSGSRVLSGS--YDYTVRMYDFQGMNSR-------LQSFRQLEPSEGHQVRNLSWSPTSDRFLCVT 215 (616)
Q Consensus 145 l~~H~~~V~~v~~sp~g~~lasgs--~Dg~i~iwd~~~~~~~-------~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~s 215 (616)
+.++...|.+|..+|+|..+|||+ .|+.++||+....... +.........|...|.|+.|++||.+|++|+
T Consensus 9 v~H~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGS 88 (942)
T KOG0973|consen 9 VNHNEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGS 88 (942)
T ss_pred cccCCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeecc
Confidence 456678899999999999999999 9999999997643221 1222223345777899999999999999999
Q ss_pred CCCeEEEEECCCC-eeeeE-----eeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEEEECCCccccceE
Q 048012 216 GSAQAKIYDRDGL-TLGEF-----VKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQV 289 (616)
Q Consensus 216 ~d~~v~vwd~~~~-~~~~~-----~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~~~ 289 (616)
.|+.|.||..... .-..| .......+....+.+|...|..++|+|++ .+|++++.|++|.|||..+++....+
T Consensus 89 DD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~-~~lvS~s~DnsViiwn~~tF~~~~vl 167 (942)
T KOG0973|consen 89 DDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDD-SLLVSVSLDNSVIIWNAKTFELLKVL 167 (942)
T ss_pred CcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCc-cEEEEecccceEEEEccccceeeeee
Confidence 9999999998841 00011 11112234566788999999999999977 69999999999999999987554443
Q ss_pred EeeeccCCCCccEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCCCCCceeeecCC------CCCeEEEEEcCCCCeEEEE
Q 048012 290 IKPKLARPGRVAVTTCAWDCDGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGH------SDDITALKFSSDGRILLSR 363 (616)
Q Consensus 290 ~~~~~~~~~~~~v~~~~~sp~g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~h------~~~V~~l~~spdg~~l~s~ 363 (616)
.+|...|..+.|+|-|++||+=+.|++|++|++..- ...+....+ ...+..+.|||||.+|++.
T Consensus 168 ------~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw----~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~ 237 (942)
T KOG0973|consen 168 ------RGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDW----GIEKSITKPFEESPLTTFFLRLSWSPDGHHLASP 237 (942)
T ss_pred ------ecccccccceEECCccCeeeeecCCceEEEEEcccc----eeeEeeccchhhCCCcceeeecccCCCcCeecch
Confidence 356668999999999999999999999999996542 233333332 2347899999999999987
Q ss_pred ec----CCcEEEEeCCCCCCcceEecCCCCCCcceeEEECCC-----CC------------EEEEeeccccccCCCceEE
Q 048012 364 SF----DGSLKVWDLRKMKEPLKVFEDLPNNYAQTNVAFSPD-----EQ------------LFLTGTSVERESTTGGLLC 422 (616)
Q Consensus 364 s~----Dg~v~lwd~~~~~~~~~~~~~~~~~~~v~~v~fspd-----g~------------~l~~gs~~~~~~~~dg~i~ 422 (616)
.. -.++.|.+-.+.+.-. .+- .|..++.++.|+|. .+ .+|+|+ .|+.|-
T Consensus 238 nA~n~~~~~~~IieR~tWk~~~-~Lv--GH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgS-------qDrSlS 307 (942)
T KOG0973|consen 238 NAVNGGKSTIAIIERGTWKVDK-DLV--GHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGS-------QDRSLS 307 (942)
T ss_pred hhccCCcceeEEEecCCceeee-eee--cCCCceEEEEeChHHhccccccCCccCCCcceEEEEEec-------CCccEE
Confidence 52 3367887765433222 222 35567999999971 11 456666 999999
Q ss_pred EEeCCCCceEEEEecCCCCCeEEEEEcCCCCcEEEEeccCCCCceEEEeccc
Q 048012 423 FYDREKLELVSRVGISPACSVVQCAWHPKLNQIFATAGDKSQGGTHILYDPR 474 (616)
Q Consensus 423 iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~~~~~~~v~~~~ 474 (616)
||.....+++..+..-....|..+.|+|+|..|++++- |+++.+....
T Consensus 308 VW~T~~~RPl~vi~~lf~~SI~DmsWspdG~~LfacS~----DGtV~~i~Fe 355 (942)
T KOG0973|consen 308 VWNTALPRPLFVIHNLFNKSIVDMSWSPDGFSLFACSL----DGTVALIHFE 355 (942)
T ss_pred EEecCCCCchhhhhhhhcCceeeeeEcCCCCeEEEEec----CCeEEEEEcc
Confidence 99998888776654334578999999999999999998 5566665533
No 85
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=7.6e-26 Score=198.11 Aligned_cols=262 Identities=20% Similarity=0.285 Sum_probs=200.7
Q ss_pred CCcceEEecCCcccEEEEEECCCCCEEEEEEcCCcEEEEeCCCCccccccceecCCCCCCceEEEEecCC---CCeEEEE
Q 048012 138 PMSNEIVLKGHTKIVSALAVDHSGSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPT---SDRFLCV 214 (616)
Q Consensus 138 p~~~~~~l~~H~~~V~~v~~sp~g~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~---g~~l~~~ 214 (616)
|......-++|.+.|+|++|+|+|.+||+|+.|.+|++.-++...........-...|.+.|..++|-.+ +..|+..
T Consensus 78 p~v~~kr~khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s 157 (350)
T KOG0641|consen 78 PSVLCKRNKHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILAS 157 (350)
T ss_pred CeEEeeeccccCccEEEEEecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEe
Confidence 3334456678999999999999999999999999999998876544333333334467888999999543 3344444
Q ss_pred eC--CCeEEEEECCCCeeeeEeeCceeEeecccCCCcccceEEE-EEcCCCCCEEEEEeCCCCEEEEECCCccccceEEe
Q 048012 215 TG--SAQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCG-EWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIK 291 (616)
Q Consensus 215 s~--d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~-~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~ 291 (616)
.+ |..|++-|...++ .+..+.+|++.|..+ .|+ + -+|++|+.|.+||+||++-..++..+-.
T Consensus 158 ~gagdc~iy~tdc~~g~------------~~~a~sghtghilalyswn--~-~m~~sgsqdktirfwdlrv~~~v~~l~~ 222 (350)
T KOG0641|consen 158 AGAGDCKIYITDCGRGQ------------GFHALSGHTGHILALYSWN--G-AMFASGSQDKTIRFWDLRVNSCVNTLDN 222 (350)
T ss_pred cCCCcceEEEeecCCCC------------cceeecCCcccEEEEEEec--C-cEEEccCCCceEEEEeeeccceeeeccC
Confidence 43 4555555554443 245578999988876 454 3 6999999999999999987666655433
Q ss_pred eeccC-CCCccEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCCCCCceeeecCCCCCeEEEEEcCCCCeEEEEecCCcEE
Q 048012 292 PKLAR-PGRVAVTTCAWDCDGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHSDDITALKFSSDGRILLSRSFDGSLK 370 (616)
Q Consensus 292 ~~~~~-~~~~~v~~~~~sp~g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~v~ 370 (616)
..... -....|.+++..|.|++|++|-.|.+..+||++.+ ..++.+..|...|.|+.|+|...+|++++.|..|+
T Consensus 223 ~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~----r~iq~f~phsadir~vrfsp~a~yllt~syd~~ik 298 (350)
T KOG0641|consen 223 DFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGG----RMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIK 298 (350)
T ss_pred cccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCC----ceeeeeCCCccceeEEEeCCCceEEEEecccceEE
Confidence 32221 12357999999999999999999999999999987 78999999999999999999999999999999999
Q ss_pred EEeCCCC---CCcceEecCCCCCCcceeEEECCCCCEEEEeeccccccCCCceEEEEeCC
Q 048012 371 VWDLRKM---KEPLKVFEDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDRE 427 (616)
Q Consensus 371 lwd~~~~---~~~~~~~~~~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~ 427 (616)
+-|++.. ..++.+.. .+...+..+.|+|..--+++.+ .|.++.+|-+.
T Consensus 299 ltdlqgdla~el~~~vv~--ehkdk~i~~rwh~~d~sfisss-------adkt~tlwa~~ 349 (350)
T KOG0641|consen 299 LTDLQGDLAHELPIMVVA--EHKDKAIQCRWHPQDFSFISSS-------ADKTATLWALN 349 (350)
T ss_pred EeecccchhhcCceEEEE--eccCceEEEEecCccceeeecc-------CcceEEEeccC
Confidence 9999742 12233333 3445588899999988888887 89999999753
No 86
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=1.7e-26 Score=211.67 Aligned_cols=291 Identities=20% Similarity=0.325 Sum_probs=229.6
Q ss_pred EecCCcccEEEEEECCCCCEEEEEEcCCcEEEEeCCCCccccccceecCCCCCCceEEEEecCCCCeEEEEeCCCeEEEE
Q 048012 144 VLKGHTKIVSALAVDHSGSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSDRFLCVTGSAQAKIY 223 (616)
Q Consensus 144 ~l~~H~~~V~~v~~sp~g~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~s~d~~v~vw 223 (616)
.|.||...|..++.......+.+++.|.+.+||.++++.+. ....+|.+.|+++.|++.+.+++++++|++..||
T Consensus 143 e~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL-----~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW 217 (481)
T KOG0300|consen 143 ELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACL-----ATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIW 217 (481)
T ss_pred hhcccccceeeehhhcCCcceeecccccceeEEeeccccce-----eeecccccceeeEEeccccceEEEccCCcchHHH
Confidence 46799999999999887789999999999999999986422 2334688889999999999999999999999999
Q ss_pred ECC------CC---------e-e------ee------EeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCE
Q 048012 224 DRD------GL---------T-L------GE------FVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSL 275 (616)
Q Consensus 224 d~~------~~---------~-~------~~------~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v 275 (616)
... .. + + .. ...+...-.++..+.+|...|.+..|...+ ..+++++.|.+.
T Consensus 218 ~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg-~Q~vTaSWDRTA 296 (481)
T KOG0300|consen 218 KAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGG-QQMVTASWDRTA 296 (481)
T ss_pred HHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCc-ceeeeeeccccc
Confidence 721 10 0 0 00 001112223566788999999999999855 689999999999
Q ss_pred EEEECCCccccceEEeeeccCCCCccEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCCCCCceeeecCCCCCeEEEEEcC
Q 048012 276 RIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWDCDGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHSDDITALKFSS 355 (616)
Q Consensus 276 ~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp 355 (616)
.+||+.++.....+ .+|....+.|+-+|..+++++.+.|-+.++||.+. ....+..+.+|...|+++.|.-
T Consensus 297 nlwDVEtge~v~~L------tGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFRe---aI~sV~VFQGHtdtVTS~vF~~ 367 (481)
T KOG0300|consen 297 NLWDVETGEVVNIL------TGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFRE---AIQSVAVFQGHTDTVTSVVFNT 367 (481)
T ss_pred eeeeeccCceeccc------cCcchhccccccCCcceEEEEeccCceeEeccchh---hcceeeeecccccceeEEEEec
Confidence 99999987665544 35666788999999999999999999999999995 4467889999999999999987
Q ss_pred CCCeEEEEecCCcEEEEeCCCCCCcceEecCCCCCCcceeEEECCCCCEEEEeeccccccCCCceEEEEeCCCCceEE--
Q 048012 356 DGRILLSRSFDGSLKVWDLRKMKEPLKVFEDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREKLELVS-- 433 (616)
Q Consensus 356 dg~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~~~~~~-- 433 (616)
+. .+++|+.|.+|++||+++...++.++.. ..++..++.+..+..|+.-. .+..|+|||+....+.+
T Consensus 368 dd-~vVSgSDDrTvKvWdLrNMRsplATIRt---dS~~NRvavs~g~~iIAiPh-------DNRqvRlfDlnG~RlaRlP 436 (481)
T KOG0300|consen 368 DD-RVVSGSDDRTVKVWDLRNMRSPLATIRT---DSPANRVAVSKGHPIIAIPH-------DNRQVRLFDLNGNRLARLP 436 (481)
T ss_pred CC-ceeecCCCceEEEeeeccccCcceeeec---CCccceeEeecCCceEEecc-------CCceEEEEecCCCccccCC
Confidence 65 6889999999999999999988888753 35588999999898999987 78899999987554322
Q ss_pred -EEecCCCCCeEEEEEcCCC--CcEEEEec
Q 048012 434 -RVGISPACSVVQCAWHPKL--NQIFATAG 460 (616)
Q Consensus 434 -~~~~~~~~~v~~~~~~p~~--~~l~~~~~ 460 (616)
+-...|...|.+++|..+- +.||+++-
T Consensus 437 rtsRqgHrRMV~c~AW~eehp~cnLftcGF 466 (481)
T KOG0300|consen 437 RTSRQGHRRMVTCCAWLEEHPACNLFTCGF 466 (481)
T ss_pred cccccccceeeeeeeccccCcccccccccc
Confidence 1222355678899996542 34444443
No 87
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.95 E-value=6.6e-26 Score=237.41 Aligned_cols=278 Identities=20% Similarity=0.332 Sum_probs=225.8
Q ss_pred CCcccEEEEEECCCCCEEEEEEcCCcEEEEeCCCCccccccceecCCCCCCceEEEEecCCCCeEEEEeCCCeEEEEECC
Q 048012 147 GHTKIVSALAVDHSGSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSDRFLCVTGSAQAKIYDRD 226 (616)
Q Consensus 147 ~H~~~V~~v~~sp~g~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~s~d~~v~vwd~~ 226 (616)
.|...|.|..|+ ..++++++.|.+|++|+..... ....-..+|...|++++|...+..|++|+.|.+++|||..
T Consensus 206 ~~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~----~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~ 279 (537)
T KOG0274|consen 206 TDDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGY----LILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCS 279 (537)
T ss_pred cCcchhhhheee--cCeEEecCCCceeEEeecccce----EEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecC
Confidence 477889999998 5689999999999999987642 2333355788899999999888999999999999999988
Q ss_pred CCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEEEECCCccccceEEeeeccCCCCccEEEEE
Q 048012 227 GLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPGRVAVTTCA 306 (616)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~ 306 (616)
.+.. ...+.+|...|.++...+ .++++|+.|.+|++|++.++..+..+. +|...|.++.
T Consensus 280 sg~C------------~~~l~gh~stv~~~~~~~---~~~~sgs~D~tVkVW~v~n~~~l~l~~------~h~~~V~~v~ 338 (537)
T KOG0274|consen 280 TGEC------------THSLQGHTSSVRCLTIDP---FLLVSGSRDNTVKVWDVTNGACLNLLR------GHTGPVNCVQ 338 (537)
T ss_pred CCcE------------EEEecCCCceEEEEEccC---ceEeeccCCceEEEEeccCcceEEEec------cccccEEEEE
Confidence 7764 444789999999999875 578899999999999999776655442 3666899999
Q ss_pred ECCCCCeEEEEeCCCcEEEEeCCCCCCCCCceeeecCCCCCeEEEEEcCCCCeEEEEecCCcEEEEeCCCCCCcceEecC
Q 048012 307 WDCDGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHSDDITALKFSSDGRILLSRSFDGSLKVWDLRKMKEPLKVFED 386 (616)
Q Consensus 307 ~sp~g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~ 386 (616)
++ +.++++|+.||+|.+||+.++ .++..+.+|...|+++.+... ..+++|+.|++|++||+++...++..+..
T Consensus 339 ~~--~~~lvsgs~d~~v~VW~~~~~----~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~ 411 (537)
T KOG0274|consen 339 LD--EPLLVSGSYDGTVKVWDPRTG----KCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQG 411 (537)
T ss_pred ec--CCEEEEEecCceEEEEEhhhc----eeeeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhcC
Confidence 87 899999999999999999976 799999999999999988755 89999999999999999986466777766
Q ss_pred CCCCCcceeEEECCCCCEEEEeeccccccCCCceEEEEeCCCCceEEEEecCCCCCeEEEEEcCCCCcEEEEeccCCCCc
Q 048012 387 LPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREKLELVSRVGISPACSVVQCAWHPKLNQIFATAGDKSQGG 466 (616)
Q Consensus 387 ~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~~~~ 466 (616)
+... +..+ ...+++|++++ .|+.|++||..++++++.+...+.+.|..+.+. ...+++++. ++
T Consensus 412 h~~~--v~~l--~~~~~~Lvs~~-------aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~--~~~il~s~~----~~ 474 (537)
T KOG0274|consen 412 HTSL--VSSL--LLRDNFLVSSS-------ADGTIKLWDAEEGECLRTLEGRHVGGVSALALG--KEEILCSSD----DG 474 (537)
T ss_pred Cccc--cccc--ccccceeEecc-------ccccEEEeecccCceeeeeccCCcccEEEeecC--cceEEEEec----CC
Confidence 5432 4333 44688999998 899999999999999999976545667777766 244555554 56
Q ss_pred eEEEecccC
Q 048012 467 THILYDPRL 475 (616)
Q Consensus 467 ~~~v~~~~~ 475 (616)
.+.+|++..
T Consensus 475 ~~~l~dl~~ 483 (537)
T KOG0274|consen 475 SVKLWDLRS 483 (537)
T ss_pred eeEEEeccc
Confidence 677776653
No 88
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=3.4e-26 Score=230.60 Aligned_cols=265 Identities=22% Similarity=0.349 Sum_probs=215.6
Q ss_pred eEEEEecCCCCeEEEEeCCCeEEEEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEEE
Q 048012 199 VRNLSWSPTSDRFLCVTGSAQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIW 278 (616)
Q Consensus 199 v~~l~~sp~g~~l~~~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iw 278 (616)
..-+.|+.. +.|+ .+....|++|+.....+..+. ..+...|+++.|+++| .+|++|..+|.|.||
T Consensus 180 ~nlldWss~-n~la-Valg~~vylW~~~s~~v~~l~------------~~~~~~vtSv~ws~~G-~~LavG~~~g~v~iw 244 (484)
T KOG0305|consen 180 LNLLDWSSA-NVLA-VALGQSVYLWSASSGSVTELC------------SFGEELVTSVKWSPDG-SHLAVGTSDGTVQIW 244 (484)
T ss_pred hhHhhcccC-CeEE-EEecceEEEEecCCCceEEeE------------ecCCCceEEEEECCCC-CEEEEeecCCeEEEE
Confidence 445788833 3444 555668999998877654331 1227889999999988 599999999999999
Q ss_pred ECCCccccceEEeeeccCCCCccEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCCCCCceeeecCCCCCeEEEEEcCCCC
Q 048012 279 DVNEFKSQKQVIKPKLARPGRVAVTTCAWDCDGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHSDDITALKFSSDGR 358 (616)
Q Consensus 279 d~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~ 358 (616)
|..+.+....+.. .|...|.+++|+ +..+.+|+.||.|..+|++... ..+..+.+|...|..+.|++|++
T Consensus 245 D~~~~k~~~~~~~-----~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~---~~~~~~~~H~qeVCgLkws~d~~ 314 (484)
T KOG0305|consen 245 DVKEQKKTRTLRG-----SHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQ---HVVSTLQGHRQEVCGLKWSPDGN 314 (484)
T ss_pred ehhhccccccccC-----CcCceeEEEecc--CceEEEecCCCcEEEEEEecch---hhhhhhhcccceeeeeEECCCCC
Confidence 9987665554432 256689999998 7889999999999999999752 33335889999999999999999
Q ss_pred eEEEEecCCcEEEEeCCCCCCcceEecCCCCCCcceeEEECCC-CCEEEEeeccccccCCCceEEEEeCCCCceEEEEec
Q 048012 359 ILLSRSFDGSLKVWDLRKMKEPLKVFEDLPNNYAQTNVAFSPD-EQLFLTGTSVERESTTGGLLCFYDREKLELVSRVGI 437 (616)
Q Consensus 359 ~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~v~~v~fspd-g~~l~~gs~~~~~~~~dg~i~iwd~~~~~~~~~~~~ 437 (616)
+||+|+.|+.|.|||... ..+...+.. |...|..++|+|- ..+||+|+ +..|+.|+|||..+++.+..+.
T Consensus 315 ~lASGgnDN~~~Iwd~~~-~~p~~~~~~--H~aAVKA~awcP~q~~lLAsGG-----Gs~D~~i~fwn~~~g~~i~~vd- 385 (484)
T KOG0305|consen 315 QLASGGNDNVVFIWDGLS-PEPKFTFTE--HTAAVKALAWCPWQSGLLATGG-----GSADRCIKFWNTNTGARIDSVD- 385 (484)
T ss_pred eeccCCCccceEeccCCC-ccccEEEec--cceeeeEeeeCCCccCceEEcC-----CCcccEEEEEEcCCCcEecccc-
Confidence 999999999999999964 344555544 5567999999995 66788876 5589999999999999999885
Q ss_pred CCCCCeEEEEEcCCCCcEEEEeccC-----------------CCCceEEEecccCCCCCcEEEEecCCcceecccccC
Q 048012 438 SPACSVVQCAWHPKLNQIFATAGDK-----------------SQGGTHILYDPRLSERGALVCVARAPRKKSVDDFEV 498 (616)
Q Consensus 438 ~~~~~v~~~~~~p~~~~l~~~~~d~-----------------~~~~~~~v~~~~~s~~g~~l~s~~~d~~~~~wd~~~ 498 (616)
..+.|..+.|++..+.|+++.+.. +.+|..+|..+++||||..+++++.|.++++|++..
T Consensus 386 -tgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~ 462 (484)
T KOG0305|consen 386 -TGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGHTSRVLYLALSPDGETIVTGAADETLRFWNLFD 462 (484)
T ss_pred -cCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCCcceeEEEEECCCCCEEEEecccCcEEeccccC
Confidence 467899999999999999988765 457777788899999999999999999999999854
No 89
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=1e-26 Score=206.20 Aligned_cols=258 Identities=15% Similarity=0.280 Sum_probs=205.4
Q ss_pred EecCCcccEEEEEECCCCCEEEEEEcCCcEEEEeCCCCccccccceecCCCCCCceEEEEecC--CCCeEEEEeCCCeEE
Q 048012 144 VLKGHTKIVSALAVDHSGSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSP--TSDRFLCVTGSAQAK 221 (616)
Q Consensus 144 ~l~~H~~~V~~v~~sp~g~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp--~g~~l~~~s~d~~v~ 221 (616)
+...|...|..+.++-.|.+|||||.|++|||+.+..... .....-..+|.++|..++|.. -|..|++++.|+.|.
T Consensus 6 idt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~--s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVI 83 (299)
T KOG1332|consen 6 IDTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQ--SKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVI 83 (299)
T ss_pred hhhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCC--ceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEE
Confidence 4568999999999999999999999999999999987543 123334557889999999977 799999999999999
Q ss_pred EEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCC-CCEEEEEeCCCCEEEEECCCccccceEEeeeccCCCCc
Q 048012 222 IYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKT-KETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPGRV 300 (616)
Q Consensus 222 vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~-~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~ 300 (616)
||.-.++... .......|...|++++|.|.+ +-+|++++.||.|.|.+++.... .........|..
T Consensus 84 iWke~~g~w~----------k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~---w~t~ki~~aH~~ 150 (299)
T KOG1332|consen 84 IWKEENGRWT----------KAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGG---WTTSKIVFAHEI 150 (299)
T ss_pred EEecCCCchh----------hhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCC---ccchhhhhcccc
Confidence 9998877532 234467899999999999975 34788999999999999876411 111122346777
Q ss_pred cEEEEEECCC---C-----------CeEEEEeCCCcEEEEeCCCCCCCCCceeeecCCCCCeEEEEEcCCC----CeEEE
Q 048012 301 AVTTCAWDCD---G-----------KCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHSDDITALKFSSDG----RILLS 362 (616)
Q Consensus 301 ~v~~~~~sp~---g-----------~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~spdg----~~l~s 362 (616)
.|++++|.|. | +.|++|+.|..|+||+...+ ....-..+.+|.+.|+.++|.|.- .+|++
T Consensus 151 GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~--~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS 228 (299)
T KOG1332|consen 151 GVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSD--SWKLERTLEGHKDWVRDVAWAPSVGLPKSTIAS 228 (299)
T ss_pred ccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCc--chhhhhhhhhcchhhhhhhhccccCCCceeeEE
Confidence 8999999986 4 56999999999999999876 445556699999999999999953 58999
Q ss_pred EecCCcEEEEeCCCCCCcc--eEecCCCCCCcceeEEECCCCCEEEEeeccccccCCCceEEEEeCC
Q 048012 363 RSFDGSLKVWDLRKMKEPL--KVFEDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDRE 427 (616)
Q Consensus 363 ~s~Dg~v~lwd~~~~~~~~--~~~~~~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~ 427 (616)
++.||+|.||..+....+. ..+.. -...+..+.||..|.+|++++ .|+.|.+|--.
T Consensus 229 ~SqDg~viIwt~~~e~e~wk~tll~~--f~~~~w~vSWS~sGn~LaVs~-------GdNkvtlwke~ 286 (299)
T KOG1332|consen 229 CSQDGTVIIWTKDEEYEPWKKTLLEE--FPDVVWRVSWSLSGNILAVSG-------GDNKVTLWKEN 286 (299)
T ss_pred ecCCCcEEEEEecCccCccccccccc--CCcceEEEEEeccccEEEEec-------CCcEEEEEEeC
Confidence 9999999999877432222 22222 334589999999999999999 89999999743
No 90
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.95 E-value=1.9e-26 Score=222.11 Aligned_cols=265 Identities=20% Similarity=0.336 Sum_probs=194.6
Q ss_pred CCCCceEEEEecCCCCe-EEEEeCCCeEEEEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCC
Q 048012 194 SEGHQVRNLSWSPTSDR-FLCVTGSAQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSED 272 (616)
Q Consensus 194 ~~~~~v~~l~~sp~g~~-l~~~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~D 272 (616)
.|.+.|..+.+-|.... +++.+..+.|.|||.....-.....+ ..++-..+.+|...-..++|++...-.|++++.|
T Consensus 122 ~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~--~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d 199 (422)
T KOG0264|consen 122 NHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASG--ECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDD 199 (422)
T ss_pred cCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccc--cCCCceEEEeecccccccccccccceeEeeccCC
Confidence 46667888888887655 45567789999999875432111111 1122335789999888999999888899999999
Q ss_pred CCEEEEECCCcccc-ceEEeeeccCCCCccEEEEEECC-CCCeEEEEeCCCcEEEEeCCCCCCCCCceeeecCCCCCeEE
Q 048012 273 GSLRIWDVNEFKSQ-KQVIKPKLARPGRVAVTTCAWDC-DGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHSDDITA 350 (616)
Q Consensus 273 g~v~iwd~~~~~~~-~~~~~~~~~~~~~~~v~~~~~sp-~g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~ 350 (616)
++|++||+...... ..+.......+|...|..++|++ +..+|++.+.|+.+.|||+|++ ..+......+|.+.|.|
T Consensus 200 ~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~--~~~~~~~~~ah~~~vn~ 277 (422)
T KOG0264|consen 200 HTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSN--TSKPSHSVKAHSAEVNC 277 (422)
T ss_pred CcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCC--CCCCcccccccCCceeE
Confidence 99999999875542 22222233457788999999998 4567888999999999999974 45677788999999999
Q ss_pred EEEcC-CCCeEEEEecCCcEEEEeCCCCCCcceEecCCCCCCcceeEEECCCCC-EEEEeeccccccCCCceEEEEeCCC
Q 048012 351 LKFSS-DGRILLSRSFDGSLKVWDLRKMKEPLKVFEDLPNNYAQTNVAFSPDEQ-LFLTGTSVERESTTGGLLCFYDREK 428 (616)
Q Consensus 351 l~~sp-dg~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~v~~v~fspdg~-~l~~gs~~~~~~~~dg~i~iwd~~~ 428 (616)
++|+| ++.+|||||.|++|+|||+|+...++..+..|. ..|.+|.|||... .|++++ .|+.+.|||+..
T Consensus 278 ~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~--dev~~V~WSPh~etvLASSg-------~D~rl~vWDls~ 348 (422)
T KOG0264|consen 278 VAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHE--DEVFQVEWSPHNETVLASSG-------TDRRLNVWDLSR 348 (422)
T ss_pred EEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCC--cceEEEEeCCCCCceeEecc-------cCCcEEEEeccc
Confidence 99999 778899999999999999999999888888755 4599999999865 455555 899999999865
Q ss_pred CceEE-------------EEecCCCCCeEEEEEcCCCCcEEEEeccCCCCceEEEeccc
Q 048012 429 LELVS-------------RVGISPACSVVQCAWHPKLNQIFATAGDKSQGGTHILYDPR 474 (616)
Q Consensus 429 ~~~~~-------------~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~~~~~~~v~~~~ 474 (616)
-...+ -+...|...|..+.|+|...+++++..+ ++...||.++
T Consensus 349 ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~Svae---DN~LqIW~~s 404 (422)
T KOG0264|consen 349 IGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAE---DNILQIWQMA 404 (422)
T ss_pred cccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecC---CceEEEeecc
Confidence 33222 1122344556666666665555555554 4555555544
No 91
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=8.1e-26 Score=207.38 Aligned_cols=288 Identities=17% Similarity=0.280 Sum_probs=221.3
Q ss_pred EEEEEECCCCCEEEEEEcCCcEEEEeCCCCccccccceecCCCCCCceEEEEecCCCCeEEEEeCCCeEEEEECCCCeee
Q 048012 152 VSALAVDHSGSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSDRFLCVTGSAQAKIYDRDGLTLG 231 (616)
Q Consensus 152 V~~v~~sp~g~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~s~d~~v~vwd~~~~~~~ 231 (616)
-.|+.|++.|.+||+|+.||.|.|||+.+. ....+...|..+|.+++||++|+.|++++.|..|.+||+..+.+.
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~-----~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l 100 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTF-----RIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPL 100 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEcccc-----chhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCce
Confidence 789999999999999999999999999874 244556678899999999999999999999999999998765431
Q ss_pred eEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEEEECCCccccceEEeeeccCCCCccEEEEEECCCC
Q 048012 232 EFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWDCDG 311 (616)
Q Consensus 232 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g 311 (616)
. .....++|+.+.|||...+.++++-.+..-.+-++... ...++.............+..|.+.|
T Consensus 101 ~-------------rirf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~--~h~~Lp~d~d~dln~sas~~~fdr~g 165 (405)
T KOG1273|consen 101 K-------------RIRFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDP--KHSVLPKDDDGDLNSSASHGVFDRRG 165 (405)
T ss_pred e-------------EEEccCccceeeeccccCCeEEEEEecCCcEEEEecCC--ceeeccCCCccccccccccccccCCC
Confidence 1 12346789999999988788887777776667776642 22222211111112223445799999
Q ss_pred CeEEEEeCCCcEEEEeCCCCCCCCCceeeecCCC-CCeEEEEEcCCCCeEEEEecCCcEEEEeCCCCCC--------cce
Q 048012 312 KCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHS-DDITALKFSSDGRILLSRSFDGSLKVWDLRKMKE--------PLK 382 (616)
Q Consensus 312 ~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~h~-~~V~~l~~spdg~~l~s~s~Dg~v~lwd~~~~~~--------~~~ 382 (616)
++|++|...|.+.+||..+. .++..++-.. ..|..|.|+..|+.|+.-+.|..||.|+++.... +.+
T Consensus 166 ~yIitGtsKGkllv~~a~t~----e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~ 241 (405)
T KOG1273|consen 166 KYIITGTSKGKLLVYDAETL----ECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEH 241 (405)
T ss_pred CEEEEecCcceEEEEecchh----eeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhH
Confidence 99999999999999999875 5555555444 6799999999999999999999999999873211 122
Q ss_pred EecCCCCCCcceeEEECCCCCEEEEeeccccccCCCceEEEEeCCCCceEEEEecCCCCCeEEEEEcCCCCcEEEEeccC
Q 048012 383 VFEDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREKLELVSRVGISPACSVVQCAWHPKLNQIFATAGDK 462 (616)
Q Consensus 383 ~~~~~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~ 462 (616)
.+...-+...-.+++||.+|.|+++++. ....|+||....|.+++.+....+.....+.|||-...|++-.
T Consensus 242 K~qDvVNk~~Wk~ccfs~dgeYv~a~s~------~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp~i~si~--- 312 (405)
T KOG1273|consen 242 KLQDVVNKLQWKKCCFSGDGEYVCAGSA------RAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPVRPIIASIA--- 312 (405)
T ss_pred HHHHHHhhhhhhheeecCCccEEEeccc------cceeEEEEecCCcceeeeecCCchhheeecccccceeeeeecc---
Confidence 2333334445678999999999999985 6778999999999999999776667789999999977666653
Q ss_pred CCCceEEEeccc
Q 048012 463 SQGGTHILYDPR 474 (616)
Q Consensus 463 ~~~~~~~v~~~~ 474 (616)
.+.+.+|...
T Consensus 313 --sg~v~iw~~~ 322 (405)
T KOG1273|consen 313 --SGVVYIWAVV 322 (405)
T ss_pred --CCceEEEEee
Confidence 4567777654
No 92
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.95 E-value=1.4e-25 Score=200.93 Aligned_cols=235 Identities=16% Similarity=0.311 Sum_probs=195.2
Q ss_pred CCCCceEEEEecCCCCeEEEEeCCCeEEEEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCC
Q 048012 194 SEGHQVRNLSWSPTSDRFLCVTGSAQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDG 273 (616)
Q Consensus 194 ~~~~~v~~l~~sp~g~~l~~~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg 273 (616)
.+...|.+|+|+.+|.+|++++.|+++.||+++...+. .-...++|...|-.++|+|....+|++++.|.
T Consensus 18 ~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~----------~~~~~~gh~~svdql~w~~~~~d~~atas~dk 87 (313)
T KOG1407|consen 18 GHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFR----------KELVYRGHTDSVDQLCWDPKHPDLFATASGDK 87 (313)
T ss_pred hhhhcceEEEEcccCceeeecccCCceEEEEecchhhh----------hhhcccCCCcchhhheeCCCCCcceEEecCCc
Confidence 45667999999999999999999999999999866431 12346899999999999999999999999999
Q ss_pred CEEEEECCCccccceEEeeeccCCCCccEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCCCCCceeeecCCCCCeEEEEE
Q 048012 274 SLRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWDCDGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHSDDITALKF 353 (616)
Q Consensus 274 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~ 353 (616)
+|++||++.+++...+.... .=.-+.|+|+|.+++++..|..|.+.|.++. +.+. .......+.-++|
T Consensus 88 ~ir~wd~r~~k~~~~i~~~~-------eni~i~wsp~g~~~~~~~kdD~it~id~r~~----~~~~-~~~~~~e~ne~~w 155 (313)
T KOG1407|consen 88 TIRIWDIRSGKCTARIETKG-------ENINITWSPDGEYIAVGNKDDRITFIDARTY----KIVN-EEQFKFEVNEISW 155 (313)
T ss_pred eEEEEEeccCcEEEEeeccC-------cceEEEEcCCCCEEEEecCcccEEEEEeccc----ceee-hhcccceeeeeee
Confidence 99999999988776554321 2245789999999999999999999999864 2322 2334456888999
Q ss_pred cCCCCeEEEEecCCcEEEEeCCCCCCcceEecCCCCCCcceeEEECCCCCEEEEeeccccccCCCceEEEEeCCCCceEE
Q 048012 354 SSDGRILLSRSFDGSLKVWDLRKMKEPLKVFEDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREKLELVS 433 (616)
Q Consensus 354 spdg~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~~~~~~ 433 (616)
+.++++++.....|+|.|...-.. +++..+..|+. ...||.|+|+|+|+|+|+ .|..+.+||+...-+++
T Consensus 156 ~~~nd~Fflt~GlG~v~ILsypsL-kpv~si~AH~s--nCicI~f~p~GryfA~Gs-------ADAlvSLWD~~ELiC~R 225 (313)
T KOG1407|consen 156 NNSNDLFFLTNGLGCVEILSYPSL-KPVQSIKAHPS--NCICIEFDPDGRYFATGS-------ADALVSLWDVDELICER 225 (313)
T ss_pred cCCCCEEEEecCCceEEEEecccc-ccccccccCCc--ceEEEEECCCCceEeecc-------ccceeeccChhHhhhhe
Confidence 988888888888899999988754 45777777664 488999999999999999 89999999999999988
Q ss_pred EEecCCCCCeEEEEEcCCCCcEEEEecc
Q 048012 434 RVGISPACSVVQCAWHPKLNQIFATAGD 461 (616)
Q Consensus 434 ~~~~~~~~~v~~~~~~p~~~~l~~~~~d 461 (616)
.+.- .+-+|..+.|+.++++|++++.|
T Consensus 226 ~isR-ldwpVRTlSFS~dg~~lASaSED 252 (313)
T KOG1407|consen 226 CISR-LDWPVRTLSFSHDGRMLASASED 252 (313)
T ss_pred eecc-ccCceEEEEeccCcceeeccCcc
Confidence 8863 66789999999999888888873
No 93
>PTZ00421 coronin; Provisional
Probab=99.95 E-value=5.7e-25 Score=230.20 Aligned_cols=264 Identities=17% Similarity=0.208 Sum_probs=192.3
Q ss_pred eEEEEecCCCCeEEEEeCCCeEEEEECCCCeee-eEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEE
Q 048012 199 VRNLSWSPTSDRFLCVTGSAQAKIYDRDGLTLG-EFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRI 277 (616)
Q Consensus 199 v~~l~~sp~g~~l~~~s~d~~v~vwd~~~~~~~-~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~i 277 (616)
|.....++++..+++++.+..+..|+..++... ..............+.+|...|++++|+|.+.++|++|+.|++|+|
T Consensus 23 i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkI 102 (493)
T PTZ00421 23 VTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMG 102 (493)
T ss_pred cccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEE
Confidence 556667778777888888888889987665321 1111000011123467999999999999944469999999999999
Q ss_pred EECCCccccceEEe-eeccCCCCccEEEEEECCCC-CeEEEEeCCCcEEEEeCCCCCCCCCceeeecCCCCCeEEEEEcC
Q 048012 278 WDVNEFKSQKQVIK-PKLARPGRVAVTTCAWDCDG-KCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHSDDITALKFSS 355 (616)
Q Consensus 278 wd~~~~~~~~~~~~-~~~~~~~~~~v~~~~~sp~g-~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp 355 (616)
||+.+......... .....+|...|.+++|+|++ ++|++|+.|++|+|||++++ ..+..+.+|...|.+|+|+|
T Consensus 103 Wdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg----~~~~~l~~h~~~V~sla~sp 178 (493)
T PTZ00421 103 WGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERG----KAVEVIKCHSDQITSLEWNL 178 (493)
T ss_pred EecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCC----eEEEEEcCCCCceEEEEEEC
Confidence 99976432111000 01123566789999999985 69999999999999999976 56677889999999999999
Q ss_pred CCCeEEEEecCCcEEEEeCCCCCCcceEecCCCCCCcceeEEECCCCCEEEEeeccccccCCCceEEEEeCCCCc-eEEE
Q 048012 356 DGRILLSRSFDGSLKVWDLRKMKEPLKVFEDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREKLE-LVSR 434 (616)
Q Consensus 356 dg~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~~~-~~~~ 434 (616)
+|++|++++.|++|+|||++++. .+..+..+.. ..+..+.|.+++.+|++++.. ...|+.|+|||+++.. .+..
T Consensus 179 dG~lLatgs~Dg~IrIwD~rsg~-~v~tl~~H~~-~~~~~~~w~~~~~~ivt~G~s---~s~Dr~VklWDlr~~~~p~~~ 253 (493)
T PTZ00421 179 DGSLLCTTSKDKKLNIIDPRDGT-IVSSVEAHAS-AKSQRCLWAKRKDLIITLGCS---KSQQRQIMLWDTRKMASPYST 253 (493)
T ss_pred CCCEEEEecCCCEEEEEECCCCc-EEEEEecCCC-CcceEEEEcCCCCeEEEEecC---CCCCCeEEEEeCCCCCCceeE
Confidence 99999999999999999999754 3445544432 224567899988888765411 1157899999998765 3333
Q ss_pred EecCCCCCeEEEEEcCCCCcEEEEeccCCCCceEEEeccc
Q 048012 435 VGISPACSVVQCAWHPKLNQIFATAGDKSQGGTHILYDPR 474 (616)
Q Consensus 435 ~~~~~~~~v~~~~~~p~~~~l~~~~~d~~~~~~~~v~~~~ 474 (616)
+.......+....|+++++.|++++.. ++.+++|++.
T Consensus 254 ~~~d~~~~~~~~~~d~d~~~L~lggkg---Dg~Iriwdl~ 290 (493)
T PTZ00421 254 VDLDQSSALFIPFFDEDTNLLYIGSKG---EGNIRCFELM 290 (493)
T ss_pred eccCCCCceEEEEEcCCCCEEEEEEeC---CCeEEEEEee
Confidence 433334556777899999999888743 7789999986
No 94
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.94 E-value=6.2e-26 Score=239.98 Aligned_cols=265 Identities=22% Similarity=0.355 Sum_probs=213.8
Q ss_pred cceEEecCCcccEEEEEECCCCCEEEEEEcCCcEEEEeCCC-----------Ccccccc--ceecCCCCCCceEEEEecC
Q 048012 140 SNEIVLKGHTKIVSALAVDHSGSRVLSGSYDYTVRMYDFQG-----------MNSRLQS--FRQLEPSEGHQVRNLSWSP 206 (616)
Q Consensus 140 ~~~~~l~~H~~~V~~v~~sp~g~~lasgs~Dg~i~iwd~~~-----------~~~~~~~--~~~~~~~~~~~v~~l~~sp 206 (616)
.+...+..|.+.|+|+.|++||++||+||.|+.|.||.... +...... .......|...|..++|+|
T Consensus 60 k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp 139 (942)
T KOG0973|consen 60 KHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSP 139 (942)
T ss_pred hhheeeccccCceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCC
Confidence 34557789999999999999999999999999999999873 0111111 2233446778899999999
Q ss_pred CCCeEEEEeCCCeEEEEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEEEECCCcccc
Q 048012 207 TSDRFLCVTGSAQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQ 286 (616)
Q Consensus 207 ~g~~l~~~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~ 286 (616)
++.+|++++.|++|.||+..+... ++.+++|...|..+.|.|-| .+|++-+.|++|+||++.+....
T Consensus 140 ~~~~lvS~s~DnsViiwn~~tF~~------------~~vl~~H~s~VKGvs~DP~G-ky~ASqsdDrtikvwrt~dw~i~ 206 (942)
T KOG0973|consen 140 DDSLLVSVSLDNSVIIWNAKTFEL------------LKVLRGHQSLVKGVSWDPIG-KYFASQSDDRTLKVWRTSDWGIE 206 (942)
T ss_pred CccEEEEecccceEEEEcccccee------------eeeeecccccccceEECCcc-CeeeeecCCceEEEEEcccceee
Confidence 999999999999999999887643 56689999999999999988 59999999999999998887777
Q ss_pred ceEEeeeccCCCCccEEEEEECCCCCeEEEEeC----CCcEEEEeCCCCCCCCCceeeecCCCCCeEEEEEcC-----CC
Q 048012 287 KQVIKPKLARPGRVAVTTCAWDCDGKCIAGGIG----DGSIQVWNLKPGWGSRPDIHVEKGHSDDITALKFSS-----DG 357 (616)
Q Consensus 287 ~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~g~~----dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp-----dg 357 (616)
+.+..+.........+..+.|+|||++|++... -.++.|.+..+ ...-..+-+|.+++.+++|+| ..
T Consensus 207 k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~t----Wk~~~~LvGH~~p~evvrFnP~lfe~~~ 282 (942)
T KOG0973|consen 207 KSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGT----WKVDKDLVGHSAPVEVVRFNPKLFERNN 282 (942)
T ss_pred EeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCC----ceeeeeeecCCCceEEEEeChHHhcccc
Confidence 777666665566667899999999999998643 23678887642 356678889999999999998 11
Q ss_pred C------------eEEEEecCCcEEEEeCCCCCCcceEecCCCCCCcceeEEECCCCCEEEEeeccccccCCCceEEEEe
Q 048012 358 R------------ILLSRSFDGSLKVWDLRKMKEPLKVFEDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYD 425 (616)
Q Consensus 358 ~------------~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd 425 (616)
. .+|+|+.|++|.||..... +|+.++.... ...|..++|+|||..|++++ .||+|.++.
T Consensus 283 ~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~-RPl~vi~~lf-~~SI~DmsWspdG~~LfacS-------~DGtV~~i~ 353 (942)
T KOG0973|consen 283 KNGTSTQPNCYYCIAAVGSQDRSLSVWNTALP-RPLFVIHNLF-NKSIVDMSWSPDGFSLFACS-------LDGTVALIH 353 (942)
T ss_pred ccCCccCCCcceEEEEEecCCccEEEEecCCC-Cchhhhhhhh-cCceeeeeEcCCCCeEEEEe-------cCCeEEEEE
Confidence 1 6789999999999998654 4444443332 24499999999999999999 999999999
Q ss_pred CCCCc
Q 048012 426 REKLE 430 (616)
Q Consensus 426 ~~~~~ 430 (616)
....+
T Consensus 354 Fee~E 358 (942)
T KOG0973|consen 354 FEEKE 358 (942)
T ss_pred cchHH
Confidence 87653
No 95
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=9.3e-26 Score=218.78 Aligned_cols=243 Identities=23% Similarity=0.365 Sum_probs=196.6
Q ss_pred cCCcccEEEEEECCCCCEEEEEEcCCcEEEEeCCCCccccccceecCCCCCCceEEEEecCCCCe-EEEEeCCCeEEEEE
Q 048012 146 KGHTKIVSALAVDHSGSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSDR-FLCVTGSAQAKIYD 224 (616)
Q Consensus 146 ~~H~~~V~~v~~sp~g~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~-l~~~s~d~~v~vwd 224 (616)
.-..+.|.++.|-.||++||.|+..|.|+|||+.+ +........|.++|..+.|+|.++. |++|+.|+.+++||
T Consensus 65 srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~-----r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d 139 (487)
T KOG0310|consen 65 SRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKS-----RVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWD 139 (487)
T ss_pred HhhccceeEEEeecCCeEEEccCCcCcEEEecccc-----HHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEE
Confidence 34578899999999999999999999999999654 1233334468889999999997655 66677889999999
Q ss_pred CCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEEEECCCccccceEEeeeccCCCCccEEE
Q 048012 225 RDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPGRVAVTT 304 (616)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~ 304 (616)
+.+..+ ...+.+|+.-|.|.+|+|...++++||+.||+||+||++... ..... ..|..+|-.
T Consensus 140 ~s~a~v------------~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~-~~v~e-----lnhg~pVe~ 201 (487)
T KOG0310|consen 140 LSTAYV------------QAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLT-SRVVE-----LNHGCPVES 201 (487)
T ss_pred cCCcEE------------EEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCC-ceeEE-----ecCCCceee
Confidence 998764 223689999999999999888899999999999999998753 11111 134448999
Q ss_pred EEECCCCCeEEEEeCCCcEEEEeCCCCCCCCCceeeecCCCCCeEEEEEcCCCCeEEEEecCCcEEEEeCCCCCCcceEe
Q 048012 305 CAWDCDGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHSDDITALKFSSDGRILLSRSFDGSLKVWDLRKMKEPLKVF 384 (616)
Q Consensus 305 ~~~sp~g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~v~lwd~~~~~~~~~~~ 384 (616)
+.+-|.|.+|++++ ...|++||+.+|. +.+..+..|...|+|+++..++..|++++.|+.|++||+.+. ++.
T Consensus 202 vl~lpsgs~iasAg-Gn~vkVWDl~~G~---qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~----Kvv 273 (487)
T KOG0310|consen 202 VLALPSGSLIASAG-GNSVKVWDLTTGG---QLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNY----KVV 273 (487)
T ss_pred EEEcCCCCEEEEcC-CCeEEEEEecCCc---eehhhhhcccceEEEEEeecCCceEeecccccceEEEEccce----EEE
Confidence 99999999999987 4689999999762 455555559999999999999999999999999999997763 333
Q ss_pred cCCCCCCcceeEEECCCCCEEEEeeccccccCCCceEEEEeC
Q 048012 385 EDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDR 426 (616)
Q Consensus 385 ~~~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~ 426 (616)
....-.++|.+++.+|+++.++.|. .+|.+.+-+.
T Consensus 274 ~s~~~~~pvLsiavs~dd~t~viGm-------snGlv~~rr~ 308 (487)
T KOG0310|consen 274 HSWKYPGPVLSIAVSPDDQTVVIGM-------SNGLVSIRRR 308 (487)
T ss_pred EeeecccceeeEEecCCCceEEEec-------ccceeeeehh
Confidence 4444557799999999999999999 7888766643
No 96
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.94 E-value=2.2e-25 Score=214.76 Aligned_cols=265 Identities=18% Similarity=0.301 Sum_probs=203.3
Q ss_pred ecCCcccEEEEEECCCCC-EEEEEEcCCcEEEEeCCCCcccccc-----ceecCCCCCCceEEEEecCCC-CeEEEEeCC
Q 048012 145 LKGHTKIVSALAVDHSGS-RVLSGSYDYTVRMYDFQGMNSRLQS-----FRQLEPSEGHQVRNLSWSPTS-DRFLCVTGS 217 (616)
Q Consensus 145 l~~H~~~V~~v~~sp~g~-~lasgs~Dg~i~iwd~~~~~~~~~~-----~~~~~~~~~~~v~~l~~sp~g-~~l~~~s~d 217 (616)
.--|.+.|+.+++-|... +||+++..+.|.|||.......... ......+|...-+.|+|++.. -+|++++.|
T Consensus 120 ~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d 199 (422)
T KOG0264|consen 120 KINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDD 199 (422)
T ss_pred eccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCC
Confidence 356999999999999764 6777888999999998754322211 111223344456779999864 468889999
Q ss_pred CeEEEEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEEEECCCccccceEEeeeccCC
Q 048012 218 AQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARP 297 (616)
Q Consensus 218 ~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~ 297 (616)
++|.+||+...... ...+.....+.+|...|..++||+....+|++++.|+.+.|||+++. .. .......+
T Consensus 200 ~~i~lwdi~~~~~~-----~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~-~~---~~~~~~~a 270 (422)
T KOG0264|consen 200 HTICLWDINAESKE-----DKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSN-TS---KPSHSVKA 270 (422)
T ss_pred CcEEEEeccccccC-----CccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCC-CC---CCcccccc
Confidence 99999999865431 12223455678999999999999999899999999999999999962 11 11122346
Q ss_pred CCccEEEEEECC-CCCeEEEEeCCCcEEEEeCCCCCCCCCceeeecCCCCCeEEEEEcCC-CCeEEEEecCCcEEEEeCC
Q 048012 298 GRVAVTTCAWDC-DGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHSDDITALKFSSD-GRILLSRSFDGSLKVWDLR 375 (616)
Q Consensus 298 ~~~~v~~~~~sp-~g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~spd-g~~l~s~s~Dg~v~lwd~~ 375 (616)
|...|.|++|+| ++.+||+|+.|++|.|||+|+. ...+..+.+|...|.+|.|+|. ...|++++.|+.+.+||+.
T Consensus 271 h~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL---~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls 347 (422)
T KOG0264|consen 271 HSAEVNCVAFNPFNEFILATGSADKTVALWDLRNL---NKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLS 347 (422)
T ss_pred cCCceeEEEeCCCCCceEEeccCCCcEEEeechhc---ccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEecc
Confidence 677999999999 5668899999999999999984 4688899999999999999994 5688999999999999997
Q ss_pred CCCCcc-----------eEecCCCCCCcceeEEECCCCCEEEEeeccccccCCCceEEEEeCC
Q 048012 376 KMKEPL-----------KVFEDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDRE 427 (616)
Q Consensus 376 ~~~~~~-----------~~~~~~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~ 427 (616)
..+... ..|....|...|..+.|+|+..++++..+ .|+.+.||.+.
T Consensus 348 ~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~Sva------eDN~LqIW~~s 404 (422)
T KOG0264|consen 348 RIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVA------EDNILQIWQMA 404 (422)
T ss_pred ccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEec------CCceEEEeecc
Confidence 543221 12333345667999999999888776654 89999999976
No 97
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.94 E-value=1.2e-25 Score=217.87 Aligned_cols=288 Identities=15% Similarity=0.239 Sum_probs=224.7
Q ss_pred ecCCcccEEEEEECCCCCEEEEEEcCCcEEEEeCCCCccccccceecCC-CCCCceEEEEecCCCCeEEEEeCCCeEEEE
Q 048012 145 LKGHTKIVSALAVDHSGSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEP-SEGHQVRNLSWSPTSDRFLCVTGSAQAKIY 223 (616)
Q Consensus 145 l~~H~~~V~~v~~sp~g~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~-~~~~~v~~l~~sp~g~~l~~~s~d~~v~vw 223 (616)
...|...|.+++++...++++||+. |.|+|||+....... ....+.- ..+..|+++.+.|+|+.|++|+.-.++.||
T Consensus 415 tL~HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~k~-PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiW 492 (705)
T KOG0639|consen 415 TLAHGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGNKS-PVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIW 492 (705)
T ss_pred hhccCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCCCC-ccccccccCcccceeeeEecCCCceEEeccccceeeee
Confidence 4479999999999999999999985 679999997643211 1111111 134569999999999999999999999999
Q ss_pred ECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEEEECCCccccceEEeeeccCCCCccEE
Q 048012 224 DRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPGRVAVT 303 (616)
Q Consensus 224 d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~ 303 (616)
|+......- -..+....-.+..++.+||. ++.++|..||.|+|||+.+...+..+ .+|...+.
T Consensus 493 DLAapTpri----------kaeltssapaCyALa~spDa-kvcFsccsdGnI~vwDLhnq~~Vrqf------qGhtDGas 555 (705)
T KOG0639|consen 493 DLAAPTPRI----------KAELTSSAPACYALAISPDA-KVCFSCCSDGNIAVWDLHNQTLVRQF------QGHTDGAS 555 (705)
T ss_pred eccCCCcch----------hhhcCCcchhhhhhhcCCcc-ceeeeeccCCcEEEEEcccceeeecc------cCCCCCce
Confidence 998654310 11122333456788899987 58889999999999999875444433 46777899
Q ss_pred EEEECCCCCeEEEEeCCCcEEEEeCCCCCCCCCceeeecCCCCCeEEEEEcCCCCeEEEEecCCcEEEEeCCCCCCcceE
Q 048012 304 TCAWDCDGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHSDDITALKFSSDGRILLSRSFDGSLKVWDLRKMKEPLKV 383 (616)
Q Consensus 304 ~~~~sp~g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~v~lwd~~~~~~~~~~ 383 (616)
||.++++|..|.+|+-|.+||.||++.+. .+ ......+.|.++.++|++.+|+.|-.++.+.|.......+
T Consensus 556 cIdis~dGtklWTGGlDntvRcWDlregr----ql-qqhdF~SQIfSLg~cP~~dWlavGMens~vevlh~skp~k---- 626 (705)
T KOG0639|consen 556 CIDISKDGTKLWTGGLDNTVRCWDLREGR----QL-QQHDFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPEK---- 626 (705)
T ss_pred eEEecCCCceeecCCCccceeehhhhhhh----hh-hhhhhhhhheecccCCCccceeeecccCcEEEEecCCccc----
Confidence 99999999999999999999999999762 11 1123357899999999999999999999998888765322
Q ss_pred ecCCCCCCcceeEEECCCCCEEEEeeccccccCCCceEEEEeCCCCceEEEEecCCCCCeEEEEEcCCCCcEEEEeccCC
Q 048012 384 FEDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREKLELVSRVGISPACSVVQCAWHPKLNQIFATAGDKS 463 (616)
Q Consensus 384 ~~~~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~ 463 (616)
+.-+.+..-|.++.|.+.|+++++.+ .|+.+..|.+.-|..+...+ ..+.|.+|..+-+.++|++|++
T Consensus 627 yqlhlheScVLSlKFa~cGkwfvStG-------kDnlLnawrtPyGasiFqsk--E~SsVlsCDIS~ddkyIVTGSG--- 694 (705)
T KOG0639|consen 627 YQLHLHESCVLSLKFAYCGKWFVSTG-------KDNLLNAWRTPYGASIFQSK--ESSSVLSCDISFDDKYIVTGSG--- 694 (705)
T ss_pred eeecccccEEEEEEecccCceeeecC-------chhhhhhccCccccceeecc--ccCcceeeeeccCceEEEecCC---
Confidence 22334556699999999999999998 89999999999998877664 5688999999999999999998
Q ss_pred CCceEEEecc
Q 048012 464 QGGTHILYDP 473 (616)
Q Consensus 464 ~~~~~~v~~~ 473 (616)
+....||.+
T Consensus 695 -dkkATVYeV 703 (705)
T KOG0639|consen 695 -DKKATVYEV 703 (705)
T ss_pred -CcceEEEEE
Confidence 445556654
No 98
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.94 E-value=1.1e-24 Score=199.98 Aligned_cols=272 Identities=16% Similarity=0.220 Sum_probs=210.1
Q ss_pred cccEEEEEECCCCCEEEEEEcCCcEEEEeCCCCccccccceecCCCCCCceEEEEecCCCCeEEEEeCCCeEEEEECCCC
Q 048012 149 TKIVSALAVDHSGSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSDRFLCVTGSAQAKIYDRDGL 228 (616)
Q Consensus 149 ~~~V~~v~~sp~g~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~s~d~~v~vwd~~~~ 228 (616)
...|+.|.|+|.+..|+.++.||++++|++.... ......+++++.+++|.++ ..+++|+-||+|+++|+++.
T Consensus 13 ~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~------l~~~~~~~~plL~c~F~d~-~~~~~G~~dg~vr~~Dln~~ 85 (323)
T KOG1036|consen 13 EDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANS------LKLKFKHGAPLLDCAFADE-STIVTGGLDGQVRRYDLNTG 85 (323)
T ss_pred hhceeeEEEcCcCCcEEEEeccCcEEEEeccchh------hhhheecCCceeeeeccCC-ceEEEeccCceEEEEEecCC
Confidence 5789999999999999999999999999998641 1122347888999999974 56888999999999999977
Q ss_pred eeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEEEECCCccccceEEeeeccCCCCccEEEEEEC
Q 048012 229 TLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWD 308 (616)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 308 (616)
.. ..+..|...|.|+.+++-. ..+++|+.|++|++||.+.......+.. + ..|.++..
T Consensus 86 ~~-------------~~igth~~~i~ci~~~~~~-~~vIsgsWD~~ik~wD~R~~~~~~~~d~-----~--kkVy~~~v- 143 (323)
T KOG1036|consen 86 NE-------------DQIGTHDEGIRCIEYSYEV-GCVISGSWDKTIKFWDPRNKVVVGTFDQ-----G--KKVYCMDV- 143 (323)
T ss_pred cc-------------eeeccCCCceEEEEeeccC-CeEEEcccCccEEEEecccccccccccc-----C--ceEEEEec-
Confidence 63 2256899999999999854 6899999999999999986332222211 1 16777765
Q ss_pred CCCCeEEEEeCCCcEEEEeCCCCCCCCCceeeecCCCCCeEEEEEcCCCCeEEEEecCCcEEEEeCCCCC---CcceEec
Q 048012 309 CDGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHSDDITALKFSSDGRILLSRSFDGSLKVWDLRKMK---EPLKVFE 385 (616)
Q Consensus 309 p~g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~v~lwd~~~~~---~~~~~~~ 385 (616)
.|+.|++|+.|..|.+||+++.. ......-....-.+.||++-|++.=+++++-||.|.+=.+.... .....|.
T Consensus 144 -~g~~LvVg~~~r~v~iyDLRn~~--~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFk 220 (323)
T KOG1036|consen 144 -SGNRLVVGTSDRKVLIYDLRNLD--EPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFK 220 (323)
T ss_pred -cCCEEEEeecCceEEEEEccccc--chhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEE
Confidence 58899999999999999999752 11111222334568999999988889999999998876655431 1111222
Q ss_pred CC-------CCCCcceeEEECCCCCEEEEeeccccccCCCceEEEEeCCCCceEEEEecCCCCCeEEEEEcCCCCcEEEE
Q 048012 386 DL-------PNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREKLELVSRVGISPACSVVQCAWHPKLNQIFAT 458 (616)
Q Consensus 386 ~~-------~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~ 458 (616)
-| .-.++|.+++|+|-...|++|+ .||.|.+||+.+.+.+..+.- ....|..++|+.+|..|+++
T Consensus 221 CHr~~~~~~~~~yPVNai~Fhp~~~tfaTgG-------sDG~V~~Wd~~~rKrl~q~~~-~~~SI~slsfs~dG~~LAia 292 (323)
T KOG1036|consen 221 CHRLSEKDTEIIYPVNAIAFHPIHGTFATGG-------SDGIVNIWDLFNRKRLKQLAK-YETSISSLSFSMDGSLLAIA 292 (323)
T ss_pred eeecccCCceEEEEeceeEeccccceEEecC-------CCceEEEccCcchhhhhhccC-CCCceEEEEeccCCCeEEEE
Confidence 22 2336799999999999999999 899999999999999888854 34679999999999999988
Q ss_pred ec
Q 048012 459 AG 460 (616)
Q Consensus 459 ~~ 460 (616)
++
T Consensus 293 ~s 294 (323)
T KOG1036|consen 293 SS 294 (323)
T ss_pred ec
Confidence 86
No 99
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=1.4e-24 Score=199.64 Aligned_cols=248 Identities=22% Similarity=0.315 Sum_probs=195.1
Q ss_pred CCcceEEecCCcccEEEEEECCCCCEEEEEEcCCcEEEEeCCCCccccccceecCCCCCCceEEEEecCCCC--eEEEEe
Q 048012 138 PMSNEIVLKGHTKIVSALAVDHSGSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSD--RFLCVT 215 (616)
Q Consensus 138 p~~~~~~l~~H~~~V~~v~~sp~g~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~--~l~~~s 215 (616)
.+.+.+.+..|..+|+||+. +|.++|+||.|-+|+|||+....+ ......|.+.|+++.|.+.-. .|++|+
T Consensus 32 ~l~~lF~~~aH~~sitavAV--s~~~~aSGssDetI~IYDm~k~~q-----lg~ll~HagsitaL~F~~~~S~shLlS~s 104 (362)
T KOG0294|consen 32 TLKPLFAFSAHAGSITALAV--SGPYVASGSSDETIHIYDMRKRKQ-----LGILLSHAGSITALKFYPPLSKSHLLSGS 104 (362)
T ss_pred eeeccccccccccceeEEEe--cceeEeccCCCCcEEEEeccchhh-----hcceeccccceEEEEecCCcchhheeeec
Confidence 34556678899999999998 488999999999999999876321 112234677899999999876 899999
Q ss_pred CCCeEEEEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEEEECCCccccceEEeeecc
Q 048012 216 GSAQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLA 295 (616)
Q Consensus 216 ~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~ 295 (616)
.||.|.+|+...-.+ +..+++|...|+.++.||.+ .+.++.+.|+.+|+||+-+++.........
T Consensus 105 dDG~i~iw~~~~W~~------------~~slK~H~~~Vt~lsiHPS~-KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~-- 169 (362)
T KOG0294|consen 105 DDGHIIIWRVGSWEL------------LKSLKAHKGQVTDLSIHPSG-KLALSVGGDQVLRTWNLVRGRVAFVLNLKN-- 169 (362)
T ss_pred CCCcEEEEEcCCeEE------------eeeecccccccceeEecCCC-ceEEEEcCCceeeeehhhcCccceeeccCC--
Confidence 999999999886543 56689999999999999987 489999999999999998876544332221
Q ss_pred CCCCccEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCCCCCceeeecCCCCCeEEEEEcCCCCeEEEEecCCcEEEEeCC
Q 048012 296 RPGRVAVTTCAWDCDGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHSDDITALKFSSDGRILLSRSFDGSLKVWDLR 375 (616)
Q Consensus 296 ~~~~~~v~~~~~sp~g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~v~lwd~~ 375 (616)
..+.+.|+|.|.+++.+..+ .|-+|.+.+. ..+... .....+.|+.|- ++.+|++|+.|+.|++||..
T Consensus 170 -----~at~v~w~~~Gd~F~v~~~~-~i~i~q~d~A----~v~~~i-~~~~r~l~~~~l-~~~~L~vG~d~~~i~~~D~d 237 (362)
T KOG0294|consen 170 -----KATLVSWSPQGDHFVVSGRN-KIDIYQLDNA----SVFREI-ENPKRILCATFL-DGSELLVGGDNEWISLKDTD 237 (362)
T ss_pred -----cceeeEEcCCCCEEEEEecc-EEEEEecccH----hHhhhh-hccccceeeeec-CCceEEEecCCceEEEeccC
Confidence 23558999999999888865 5889988764 222222 223568888886 56789999999999999998
Q ss_pred CCCCcceEecCCCCCCcceeEEE--CCCCCEEEEeeccccccCCCceEEEEeCCCC
Q 048012 376 KMKEPLKVFEDLPNNYAQTNVAF--SPDEQLFLTGTSVERESTTGGLLCFYDREKL 429 (616)
Q Consensus 376 ~~~~~~~~~~~~~~~~~v~~v~f--spdg~~l~~gs~~~~~~~~dg~i~iwd~~~~ 429 (616)
. ..+...+..|... |-.+.+ .|++.||++++ .||.|+|||+...
T Consensus 238 s-~~~~~~~~AH~~R--VK~i~~~~~~~~~~lvTaS-------SDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 238 S-DTPLTEFLAHENR--VKDIASYTNPEHEYLVTAS-------SDGFIKVWDIDME 283 (362)
T ss_pred C-Cccceeeecchhh--eeeeEEEecCCceEEEEec-------cCceEEEEEcccc
Confidence 6 5667777666554 777764 57789999999 8999999998765
No 100
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=3.8e-24 Score=205.96 Aligned_cols=289 Identities=18% Similarity=0.225 Sum_probs=218.8
Q ss_pred cccEEEEEECCCCCEEEEEEcCCcEEEEeCCCCccccccceecCCCCCCceEEEEecCCCC-eEEEEeCCCeEEEEECCC
Q 048012 149 TKIVSALAVDHSGSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSD-RFLCVTGSAQAKIYDRDG 227 (616)
Q Consensus 149 ~~~V~~v~~sp~g~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~-~l~~~s~d~~v~vwd~~~ 227 (616)
.+.|++|.|+|...+|++++.|++++||.+.+.... +.+.......+|.+.+|.|+|. .+++++....++.||+..
T Consensus 213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~---~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ 289 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNP---KLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLET 289 (514)
T ss_pred cCCceEEEecCCCceEEEecCCCcEEEEEecCccCh---hheeeeeccCccceeeecCCCceEEEecccceEEEEeeccc
Confidence 578999999999999999999999999999875332 2233334677899999999999 888888999999999987
Q ss_pred CeeeeEeeCceeEeecccCCCcc-cceEEEEEcCCCCCEEEEEeCCCCEEEEECCCccccceEEeeeccCCCCccEEEEE
Q 048012 228 LTLGEFVKGDMYIRDLKNTKGHI-CGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPGRVAVTTCA 306 (616)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~h~-~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~ 306 (616)
.++.. +....++. ..+.....++++ ++|+..+..|.|.|....++..+..+... +.|..++
T Consensus 290 ak~~k----------~~~~~g~e~~~~e~FeVShd~-~fia~~G~~G~I~lLhakT~eli~s~Kie-------G~v~~~~ 351 (514)
T KOG2055|consen 290 AKVTK----------LKPPYGVEEKSMERFEVSHDS-NFIAIAGNNGHIHLLHAKTKELITSFKIE-------GVVSDFT 351 (514)
T ss_pred ccccc----------ccCCCCcccchhheeEecCCC-CeEEEcccCceEEeehhhhhhhhheeeec-------cEEeeEE
Confidence 76533 33344443 456777888987 59999999999999998887665554322 2689999
Q ss_pred ECCCCCeEEEEeCCCcEEEEeCCCCCCCCCceeeecCCCC-CeEEEEEcCCCCeEEEEecCCcEEEEeCCC-----CCCc
Q 048012 307 WDCDGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHSD-DITALKFSSDGRILLSRSFDGSLKVWDLRK-----MKEP 380 (616)
Q Consensus 307 ~sp~g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~h~~-~V~~l~~spdg~~l~s~s~Dg~v~lwd~~~-----~~~~ 380 (616)
|+.+++.|++.+.+|.|++||++.. .++..+....+ .-++++.++++.|||+|+..|.|.|||..+ ...|
T Consensus 352 fsSdsk~l~~~~~~GeV~v~nl~~~----~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkP 427 (514)
T KOG2055|consen 352 FSSDSKELLASGGTGEVYVWNLRQN----SCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKP 427 (514)
T ss_pred EecCCcEEEEEcCCceEEEEecCCc----ceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCc
Confidence 9999999999999999999999965 55555543222 236788889999999999999999999654 2345
Q ss_pred ceEecCCCCCCcceeEEECCCCCEEEEeeccccccCCCceEEEEeCCCCceEEEEecCC--CCCeEEEEEcCCCCcEEEE
Q 048012 381 LKVFEDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREKLELVSRVGISP--ACSVVQCAWHPKLNQIFAT 458 (616)
Q Consensus 381 ~~~~~~~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~--~~~v~~~~~~p~~~~l~~~ 458 (616)
+..+..+. ..|+++.|++|+++|+.++.. ....+++-.+.+......+.... -+.|+|++|+|.+.+|++|
T Consensus 428 ik~~dNLt--t~Itsl~Fn~d~qiLAiaS~~-----~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvG 500 (514)
T KOG2055|consen 428 IKTVDNLT--TAITSLQFNHDAQILAIASRV-----KKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVG 500 (514)
T ss_pred hhhhhhhh--eeeeeeeeCcchhhhhhhhhc-----cccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEee
Confidence 55555544 349999999999999999832 46678888887776666554321 2456777777766666666
Q ss_pred eccCCCCceEEEecc
Q 048012 459 AGDKSQGGTHILYDP 473 (616)
Q Consensus 459 ~~d~~~~~~~~v~~~ 473 (616)
.. ++.+.+|.+
T Consensus 501 Ne----~grv~l~kL 511 (514)
T KOG2055|consen 501 NE----AGRVHLFKL 511 (514)
T ss_pred cC----CCceeeEee
Confidence 65 555556554
No 101
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.94 E-value=5e-24 Score=218.60 Aligned_cols=334 Identities=19% Similarity=0.244 Sum_probs=257.5
Q ss_pred ceEEecCCcccEEEEEECCCCCEEEEEEcCCcEEEEeCCCCccccccceecCCCCCCceEEEEecCCCCeEEEEeC-CCe
Q 048012 141 NEIVLKGHTKIVSALAVDHSGSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSDRFLCVTG-SAQ 219 (616)
Q Consensus 141 ~~~~l~~H~~~V~~v~~sp~g~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~s~-d~~ 219 (616)
..++++++...|+++.-+|-=..+|.|..+|+|.|+++... ..+..|+. .-++|++++|..||..+++.+. .|.
T Consensus 194 ~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~d-kil~sFk~----d~g~VtslSFrtDG~p~las~~~~G~ 268 (910)
T KOG1539|consen 194 VVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFD-KILMSFKQ----DWGRVTSLSFRTDGNPLLASGRSNGD 268 (910)
T ss_pred EEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccC-cEEEEEEc----cccceeEEEeccCCCeeEEeccCCce
Confidence 35578899999999999999899999999999999999864 23333331 2467999999999998665554 599
Q ss_pred EEEEECCCCeeeeEe-----------------------------------eCceeEeecccCCCcccceEEEEEcCCCCC
Q 048012 220 AKIYDRDGLTLGEFV-----------------------------------KGDMYIRDLKNTKGHICGLTCGEWHPKTKE 264 (616)
Q Consensus 220 v~vwd~~~~~~~~~~-----------------------------------~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~ 264 (616)
+.+||++...+.... .++...+.++...||..+..|+.|.-....
T Consensus 269 m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~ 348 (910)
T KOG1539|consen 269 MAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGH 348 (910)
T ss_pred EEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcE
Confidence 999999876543221 112222446667899999999999865557
Q ss_pred EEEEEeCCCCEEEEECCC--------------------------------------------------------------
Q 048012 265 TILTSSEDGSLRIWDVNE-------------------------------------------------------------- 282 (616)
Q Consensus 265 ~l~s~s~Dg~v~iwd~~~-------------------------------------------------------------- 282 (616)
.+++++.|++++.+++..
T Consensus 349 ~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~ 428 (910)
T KOG1539|consen 349 FILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWN 428 (910)
T ss_pred EEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEe
Confidence 888888888877776521
Q ss_pred ---ccccceEEeeeccCCCCccEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCCCCCceeeecCCCCCeEEEEEcCCCCe
Q 048012 283 ---FKSQKQVIKPKLARPGRVAVTTCAWDCDGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHSDDITALKFSSDGRI 359 (616)
Q Consensus 283 ---~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~ 359 (616)
...-..+..+.........+++|+.++.|++.+.|+..|.|-+|++++|- .+.......+|.++|+.|+...-++.
T Consensus 429 ~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi-~r~sf~~~~ah~~~V~gla~D~~n~~ 507 (910)
T KOG1539|consen 429 FRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGI-HRKSFGDSPAHKGEVTGLAVDGTNRL 507 (910)
T ss_pred ccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCe-eecccccCccccCceeEEEecCCCce
Confidence 10000011111111123468999999999999999999999999999882 12222223689999999999999999
Q ss_pred EEEEecCCcEEEEeCCCCCCcceEecCCCCCCcceeEEECCCCCEEEEeeccccccCCCceEEEEeCCCCceEEEEecCC
Q 048012 360 LLSRSFDGSLKVWDLRKMKEPLKVFEDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREKLELVSRVGISP 439 (616)
Q Consensus 360 l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~ 439 (616)
+++++.+|-+++||+.+. ..+.. ..-...+.++.++....+++++. .+-.|+++|+.+.+.++.+.. |
T Consensus 508 ~vsa~~~Gilkfw~f~~k-~l~~~---l~l~~~~~~iv~hr~s~l~a~~~-------ddf~I~vvD~~t~kvvR~f~g-h 575 (910)
T KOG1539|consen 508 LVSAGADGILKFWDFKKK-VLKKS---LRLGSSITGIVYHRVSDLLAIAL-------DDFSIRVVDVVTRKVVREFWG-H 575 (910)
T ss_pred EEEccCcceEEEEecCCc-ceeee---eccCCCcceeeeeehhhhhhhhc-------CceeEEEEEchhhhhhHHhhc-c
Confidence 999999999999999863 22332 23345588899999989999988 899999999999999999875 7
Q ss_pred CCCeEEEEEcCCCCcEEEEeccCCCCceEEEec------------------ccCCCCCcEEEEecCC-cceecccc
Q 048012 440 ACSVVQCAWHPKLNQIFATAGDKSQGGTHILYD------------------PRLSERGALVCVARAP-RKKSVDDF 496 (616)
Q Consensus 440 ~~~v~~~~~~p~~~~l~~~~~d~~~~~~~~v~~------------------~~~s~~g~~l~s~~~d-~~~~~wd~ 496 (616)
...|+++.|+|+|++|++++. ++++++|| +.|||+|.+||++..| .-|.+|--
T Consensus 576 ~nritd~~FS~DgrWlisasm----D~tIr~wDlpt~~lID~~~vd~~~~sls~SPngD~LAT~Hvd~~gIylWsN 647 (910)
T KOG1539|consen 576 GNRITDMTFSPDGRWLISASM----DSTIRTWDLPTGTLIDGLLVDSPCTSLSFSPNGDFLATVHVDQNGIYLWSN 647 (910)
T ss_pred ccceeeeEeCCCCcEEEEeec----CCcEEEEeccCcceeeeEecCCcceeeEECCCCCEEEEEEecCceEEEEEc
Confidence 889999999999999999998 78999999 5689999999999998 66777753
No 102
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.93 E-value=1.7e-24 Score=226.73 Aligned_cols=249 Identities=24% Similarity=0.367 Sum_probs=203.9
Q ss_pred eEE-ecCCcccEEEEEECCCCCEEEEEEcCCcEEEEeCCCCccccccceecCCCCCCceEEEEecCCCCeEEEEeCCCeE
Q 048012 142 EIV-LKGHTKIVSALAVDHSGSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSDRFLCVTGSAQA 220 (616)
Q Consensus 142 ~~~-l~~H~~~V~~v~~sp~g~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~s~d~~v 220 (616)
... |.||.+.|.+++|..-+.+|++|+.|.+++|||..++. .......|...|.++...+ .++++|+.|.+|
T Consensus 241 i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~-----C~~~l~gh~stv~~~~~~~--~~~~sgs~D~tV 313 (537)
T KOG0274|consen 241 ILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGE-----CTHSLQGHTSSVRCLTIDP--FLLVSGSRDNTV 313 (537)
T ss_pred EEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCc-----EEEEecCCCceEEEEEccC--ceEeeccCCceE
Confidence 445 88999999999998778899999999999999988763 2333446777788877654 467778999999
Q ss_pred EEEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEEEECCCccccceEEeeeccCCCCc
Q 048012 221 KIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPGRV 300 (616)
Q Consensus 221 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~ 300 (616)
+||++.+... +..+.+|...|+++..+ + .++++|+.|++|++||+.++++...+ .+|..
T Consensus 314 kVW~v~n~~~------------l~l~~~h~~~V~~v~~~--~-~~lvsgs~d~~v~VW~~~~~~cl~sl------~gH~~ 372 (537)
T KOG0274|consen 314 KVWDVTNGAC------------LNLLRGHTGPVNCVQLD--E-PLLVSGSYDGTVKVWDPRTGKCLKSL------SGHTG 372 (537)
T ss_pred EEEeccCcce------------EEEeccccccEEEEEec--C-CEEEEEecCceEEEEEhhhceeeeee------cCCcc
Confidence 9999996654 44467799999999998 3 69999999999999999987776655 35667
Q ss_pred cEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCCCCCceeeecCCCCCeEEEEEcCCCCeEEEEecCCcEEEEeCCCCCCc
Q 048012 301 AVTTCAWDCDGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHSDDITALKFSSDGRILLSRSFDGSLKVWDLRKMKEP 380 (616)
Q Consensus 301 ~v~~~~~sp~g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~v~lwd~~~~~~~ 380 (616)
.|.++.+... ..+++|+.|++|++||+++.. .++..+.+|..-|.++.+. +++|++++.|++|++||..++ .+
T Consensus 373 ~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~---~c~~tl~~h~~~v~~l~~~--~~~Lvs~~aD~~Ik~WD~~~~-~~ 445 (537)
T KOG0274|consen 373 RVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKR---KCIHTLQGHTSLVSSLLLR--DNFLVSSSADGTIKLWDAEEG-EC 445 (537)
T ss_pred eEEEEEecCc-ceEEeeeeccceEeecCCchh---hhhhhhcCCcccccccccc--cceeEeccccccEEEeecccC-ce
Confidence 8999988766 899999999999999999752 6888999999999777764 789999999999999999875 45
Q ss_pred ceEecCCCCCCcceeEEECCCCCEEEEeeccccccCCCceEEEEeCCCCceEEEE
Q 048012 381 LKVFEDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREKLELVSRV 435 (616)
Q Consensus 381 ~~~~~~~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~~~~~~~~ 435 (616)
++.+... +...|+.+++. ...+++++ .+|.+.+||+.++++.+.+
T Consensus 446 ~~~~~~~-~~~~v~~l~~~--~~~il~s~-------~~~~~~l~dl~~~~~~~~l 490 (537)
T KOG0274|consen 446 LRTLEGR-HVGGVSALALG--KEEILCSS-------DDGSVKLWDLRSGTLIRTL 490 (537)
T ss_pred eeeeccC-CcccEEEeecC--cceEEEEe-------cCCeeEEEecccCchhhhh
Confidence 6666553 33557777776 46666666 8999999999999988877
No 103
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.93 E-value=3.6e-24 Score=204.51 Aligned_cols=230 Identities=21% Similarity=0.342 Sum_probs=195.6
Q ss_pred ceEEEEecCCCCeEEEEeCCCeEEEEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEE
Q 048012 198 QVRNLSWSPTSDRFLCVTGSAQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRI 277 (616)
Q Consensus 198 ~v~~l~~sp~g~~l~~~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~i 277 (616)
.+.++...+....+++|+.|..+.++|....++ +..++||...|+.+.|+++. ..+++++.|..|||
T Consensus 221 gi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~------------l~~~~Gh~kki~~v~~~~~~-~~v~~aSad~~i~v 287 (506)
T KOG0289|consen 221 GITALDIIPSSSKILTGGEDKTAVLFDKPSNQI------------LATLKGHTKKITSVKFHKDL-DTVITASADEIIRV 287 (506)
T ss_pred CeeEEeecCCCCcceecCCCCceEEEecchhhh------------hhhccCcceEEEEEEeccch-hheeecCCcceEEe
Confidence 478888888878899999999999999987765 66789999999999999986 58999999999999
Q ss_pred EECCCccccceEEeeeccCCCCccEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCCCCCceeeecC--CCCCeEEEEEcC
Q 048012 278 WDVNEFKSQKQVIKPKLARPGRVAVTTCAWDCDGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKG--HSDDITALKFSS 355 (616)
Q Consensus 278 wd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~--h~~~V~~l~~sp 355 (616)
|........... ..|..+|+.+..+|.|.||++++.||+..+.|++++. .+..... ..-.+++++|+|
T Consensus 288 ws~~~~s~~~~~------~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~----~lt~vs~~~s~v~~ts~~fHp 357 (506)
T KOG0289|consen 288 WSVPLSSEPTSS------RPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGS----QLTVVSDETSDVEYTSAAFHP 357 (506)
T ss_pred eccccccCcccc------ccccccceeeeeccCCcEEEEecCCceEEEEEccCCc----EEEEEeeccccceeEEeeEcC
Confidence 998764432222 3556689999999999999999999999999999872 3332222 234589999999
Q ss_pred CCCeEEEEecCCcEEEEeCCCCCCcceEecCCCCCCcceeEEECCCCCEEEEeeccccccCCCceEEEEeCCCCceEEEE
Q 048012 356 DGRILLSRSFDGSLKVWDLRKMKEPLKVFEDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREKLELVSRV 435 (616)
Q Consensus 356 dg~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~~~~~~~~ 435 (616)
||.+|.+|..|+.|+|||+.+.. .+..|.. |.++|..++|+.+|-||++++ .|+.|++||++..+.+.++
T Consensus 358 DgLifgtgt~d~~vkiwdlks~~-~~a~Fpg--ht~~vk~i~FsENGY~Lat~a-------dd~~V~lwDLRKl~n~kt~ 427 (506)
T KOG0289|consen 358 DGLIFGTGTPDGVVKIWDLKSQT-NVAKFPG--HTGPVKAISFSENGYWLATAA-------DDGSVKLWDLRKLKNFKTI 427 (506)
T ss_pred CceEEeccCCCceEEEEEcCCcc-ccccCCC--CCCceeEEEeccCceEEEEEe-------cCCeEEEEEehhhccccee
Confidence 99999999999999999999755 4555555 667799999999999999999 8999999999999999999
Q ss_pred ecCCCCCeEEEEEcCCCCcEEEEec
Q 048012 436 GISPACSVVQCAWHPKLNQIFATAG 460 (616)
Q Consensus 436 ~~~~~~~v~~~~~~p~~~~l~~~~~ 460 (616)
.......|.++.|.+.|.+|+.++.
T Consensus 428 ~l~~~~~v~s~~fD~SGt~L~~~g~ 452 (506)
T KOG0289|consen 428 QLDEKKEVNSLSFDQSGTYLGIAGS 452 (506)
T ss_pred eccccccceeEEEcCCCCeEEeecc
Confidence 8876667999999999999999866
No 104
>PTZ00420 coronin; Provisional
Probab=99.93 E-value=1.3e-23 Score=220.90 Aligned_cols=236 Identities=13% Similarity=0.191 Sum_probs=165.8
Q ss_pred EeCCCeEEEEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEEEECCCccc-cceEEe-
Q 048012 214 VTGSAQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKS-QKQVIK- 291 (616)
Q Consensus 214 ~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~-~~~~~~- 291 (616)
|+..+.|++|+..... .+..+.+|...|.+++|+|+...+|++|+.|++|+|||+.+... ...+..
T Consensus 50 GG~~gvI~L~~~~r~~------------~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p 117 (568)
T PTZ00420 50 GGLIGAIRLENQMRKP------------PVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDP 117 (568)
T ss_pred CCceeEEEeeecCCCc------------eEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccc
Confidence 4456778888865432 23446899999999999998667999999999999999976432 111000
Q ss_pred eeccCCCCccEEEEEECCCCCe-EEEEeCCCcEEEEeCCCCCCCCCceeeecCCCCCeEEEEEcCCCCeEEEEecCCcEE
Q 048012 292 PKLARPGRVAVTTCAWDCDGKC-IAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHSDDITALKFSSDGRILLSRSFDGSLK 370 (616)
Q Consensus 292 ~~~~~~~~~~v~~~~~sp~g~~-l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~v~ 370 (616)
.....+|...|.+++|+|++.. |++++.||+|+|||++++ ..+..+. |...|.+++|+++|.+|++++.|++|+
T Consensus 118 ~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg----~~~~~i~-~~~~V~SlswspdG~lLat~s~D~~Ir 192 (568)
T PTZ00420 118 QCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENE----KRAFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMH 192 (568)
T ss_pred eEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCC----cEEEEEe-cCCcEEEEEECCCCCEEEEEecCCEEE
Confidence 0112356668999999999875 578999999999999976 3333443 567899999999999999999999999
Q ss_pred EEeCCCCCCcceEecCCCCCC---cceeEEECCCCCEEEEeeccccccCCCceEEEEeCCC-CceEEEEecCCCCCeEEE
Q 048012 371 VWDLRKMKEPLKVFEDLPNNY---AQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREK-LELVSRVGISPACSVVQC 446 (616)
Q Consensus 371 lwd~~~~~~~~~~~~~~~~~~---~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~v~~~ 446 (616)
|||++++. .+..+..|.... .+....|++++.+|++++... ..++.|+|||+++ .+.+..+.+.....+...
T Consensus 193 IwD~Rsg~-~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~---~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p 268 (568)
T PTZ00420 193 IIDPRKQE-IASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSK---NNMREMKLWDLKNTTSALVTMSIDNASAPLIP 268 (568)
T ss_pred EEECCCCc-EEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCC---CCccEEEEEECCCCCCceEEEEecCCccceEE
Confidence 99999754 455565554321 123345678999999877210 0124799999985 566666654333334344
Q ss_pred EEcCC-CCcEEEEeccCCCCceEEEeccc
Q 048012 447 AWHPK-LNQIFATAGDKSQGGTHILYDPR 474 (616)
Q Consensus 447 ~~~p~-~~~l~~~~~d~~~~~~~~v~~~~ 474 (616)
.|.++ +..+++|.+ ++.+++|++.
T Consensus 269 ~~D~~tg~l~lsGkG----D~tIr~~e~~ 293 (568)
T PTZ00420 269 HYDESTGLIYLIGKG----DGNCRYYQHS 293 (568)
T ss_pred eeeCCCCCEEEEEEC----CCeEEEEEcc
Confidence 55555 555555555 8899999985
No 105
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.93 E-value=4.8e-24 Score=205.15 Aligned_cols=302 Identities=17% Similarity=0.243 Sum_probs=223.8
Q ss_pred EecCCcccEEEEEECCCC--CEEEEEEcCCcEEEEeCCCCccccccceecCCCCCCceEEEEecCCC-CeEEEEeCCCeE
Q 048012 144 VLKGHTKIVSALAVDHSG--SRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTS-DRFLCVTGSAQA 220 (616)
Q Consensus 144 ~l~~H~~~V~~v~~sp~g--~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g-~~l~~~s~d~~v 220 (616)
..+-|.+.|++++|+|.. +++|+|+.-|+|-+||+.+..... .-..+...|+.+|.+|.|+|.. .++++.+.||+|
T Consensus 181 v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~-d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGti 259 (498)
T KOG4328|consen 181 VAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDK-DGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTI 259 (498)
T ss_pred eeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCcc-CceEEeccCCccccceEecCCChhheeeeccCcee
Confidence 456789999999999975 489999999999999996432222 2333445688899999999964 578999999999
Q ss_pred EEEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEEEECCCccccceEEeeeccCCCCc
Q 048012 221 KIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPGRV 300 (616)
Q Consensus 221 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~ 300 (616)
++-|+++....++ ..+..-...+..+.|+.... .++.+..=|.+.+||+++.+....... -|..
T Consensus 260 R~~D~~~~i~e~v----------~s~~~d~~~fs~~d~~~e~~-~vl~~~~~G~f~~iD~R~~~s~~~~~~-----lh~k 323 (498)
T KOG4328|consen 260 RLQDFEGNISEEV----------LSLDTDNIWFSSLDFSAESR-SVLFGDNVGNFNVIDLRTDGSEYENLR-----LHKK 323 (498)
T ss_pred eeeeecchhhHHH----------hhcCccceeeeeccccCCCc-cEEEeecccceEEEEeecCCccchhhh-----hhhc
Confidence 9999997765332 22233445667778887765 555666556999999998765333222 2333
Q ss_pred cEEEEEECCC-CCeEEEEeCCCcEEEEeCCCCCCCCCceeeecCCCCCeEEEEEcCCCCeEEEEecCCcEEEEeCC---C
Q 048012 301 AVTTCAWDCD-GKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHSDDITALKFSSDGRILLSRSFDGSLKVWDLR---K 376 (616)
Q Consensus 301 ~v~~~~~sp~-g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~v~lwd~~---~ 376 (616)
.|++++++|. ..+||+++.|++++|||++.-......+.....|...|.++.|||.+-.|++.+.|..|+|||.. .
T Consensus 324 KI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa 403 (498)
T KOG4328|consen 324 KITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISA 403 (498)
T ss_pred ccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccc
Confidence 7999999995 56799999999999999997643332355667899999999999988789999999999999984 2
Q ss_pred CCCcceEecC-CCCCCc--ceeEEECCCCCEEEEeeccccccCCCceEEEEeCCCCceEEEEecCCCCCeEEE-EEcCCC
Q 048012 377 MKEPLKVFED-LPNNYA--QTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREKLELVSRVGISPACSVVQC-AWHPKL 452 (616)
Q Consensus 377 ~~~~~~~~~~-~~~~~~--v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~-~~~p~~ 452 (616)
.-.+...+.. .....+ .....|.|+..+|++|. .-..|-|||-..++.+..+..+....|.++ .|||..
T Consensus 404 ~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~-------~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~ 476 (498)
T KOG4328|consen 404 KDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGR-------YPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMR 476 (498)
T ss_pred cCCccceeeccCcccccccchhheeCCCccEEEEec-------cCcceeEEcCCCCEEeeeccCccccccccceeecccc
Confidence 2233333321 112122 34578999999999998 677799999999998888755444455554 899998
Q ss_pred CcEEEEeccCCCCceEEEec
Q 048012 453 NQIFATAGDKSQGGTHILYD 472 (616)
Q Consensus 453 ~~l~~~~~d~~~~~~~~v~~ 472 (616)
..+++|+.. .+.+.||.
T Consensus 477 ~~~~aG~~s---~Gki~vft 493 (498)
T KOG4328|consen 477 DTLAAGGNS---SGKIYVFT 493 (498)
T ss_pred cceeccCCc---cceEEEEe
Confidence 888888863 66677664
No 106
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.93 E-value=3.2e-24 Score=201.52 Aligned_cols=253 Identities=21% Similarity=0.320 Sum_probs=187.3
Q ss_pred eEEecCCcccEEEEEECCCC--CEEEEEEcCCcEEEEeCCCCcccc---------ccceecC--CCCCCceEEEEecCCC
Q 048012 142 EIVLKGHTKIVSALAVDHSG--SRVLSGSYDYTVRMYDFQGMNSRL---------QSFRQLE--PSEGHQVRNLSWSPTS 208 (616)
Q Consensus 142 ~~~l~~H~~~V~~v~~sp~g--~~lasgs~Dg~i~iwd~~~~~~~~---------~~~~~~~--~~~~~~v~~l~~sp~g 208 (616)
+...-.|.+.|+.+..++-| .+.|+-+..|.|+||++..+...+ ..++.+. ..|+..=+.|+|||--
T Consensus 144 ~~~~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~ 223 (440)
T KOG0302|consen 144 EMKSIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIK 223 (440)
T ss_pred cccccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeeccccc
Confidence 44556788899998888766 466677788999999986432211 1112222 2344557889999942
Q ss_pred -CeEEEEeCCCeEEEEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEEEECCCccccc
Q 048012 209 -DRFLCVTGSAQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQK 287 (616)
Q Consensus 209 -~~l~~~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~ 287 (616)
..|++|..-+.|++|...++.. ..+...+.+|+..|..++|+|....+|++||.||+|+|||++.+....
T Consensus 224 ~g~LlsGDc~~~I~lw~~~~g~W---------~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~ 294 (440)
T KOG0302|consen 224 TGRLLSGDCVKGIHLWEPSTGSW---------KVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKA 294 (440)
T ss_pred ccccccCccccceEeeeeccCce---------eecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccc
Confidence 3477787888999999876442 234556788999999999999988999999999999999999875444
Q ss_pred eEEeeeccCCCCccEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCCCCCceeeecCCCCCeEEEEEcC-CCCeEEEEecC
Q 048012 288 QVIKPKLARPGRVAVTTCAWDCDGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHSDDITALKFSS-DGRILLSRSFD 366 (616)
Q Consensus 288 ~~~~~~~~~~~~~~v~~~~~sp~g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp-dg~~l~s~s~D 366 (616)
.+.. ..|...|+.+.|+..-.+||+|+.||+++|||++.-. ...++..++.|..+|++|.|+| +...|++++.|
T Consensus 295 ~~~~----kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~-~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D 369 (440)
T KOG0302|consen 295 AVST----KAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFK-SGQPVATFKYHKAPITSIEWHPHEDSVIAASGED 369 (440)
T ss_pred eeEe----eccCCceeeEEccCCcceeeecCCCceEEEEEhhhcc-CCCcceeEEeccCCeeEEEeccccCceEEeccCC
Confidence 4433 3455689999999988899999999999999999764 3467889999999999999999 45688888999
Q ss_pred CcEEEEeCCCCC---------------CcceEecCCCCCCcceeEEECCCCCEEEEe
Q 048012 367 GSLKVWDLRKMK---------------EPLKVFEDLPNNYAQTNVAFSPDEQLFLTG 408 (616)
Q Consensus 367 g~v~lwd~~~~~---------------~~~~~~~~~~~~~~v~~v~fspdg~~l~~g 408 (616)
..|.|||+.-.. .+-+.+--|.....+-.+.|++.-.-+++.
T Consensus 370 ~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvs 426 (440)
T KOG0302|consen 370 NQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVS 426 (440)
T ss_pred CcEEEEEeeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEE
Confidence 999999985321 112222233344457788999875433333
No 107
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.93 E-value=7.9e-24 Score=213.19 Aligned_cols=281 Identities=20% Similarity=0.289 Sum_probs=220.2
Q ss_pred ceEEecCCcccEEEEEECCCCCEEEEEEcCCcEEEEeCCCCccccccceecCCCCCCceEE-EEecC-CCCeEEEEeCCC
Q 048012 141 NEIVLKGHTKIVSALAVDHSGSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRN-LSWSP-TSDRFLCVTGSA 218 (616)
Q Consensus 141 ~~~~l~~H~~~V~~v~~sp~g~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~-l~~sp-~g~~l~~~s~d~ 218 (616)
....+.||..-|..+++.+ +..++++|.||++++|+-.... ......+ ..+.+.|.+ ++|-+ ++-+|++|+.|.
T Consensus 6 ls~~l~gH~~DVr~v~~~~-~~~i~s~sRd~t~~vw~~~~~~--~l~~~~~-~~~~g~i~~~i~y~e~~~~~l~~g~~D~ 81 (745)
T KOG0301|consen 6 LSHELEGHKSDVRAVAVTD-GVCIISGSRDGTVKVWAKKGKQ--YLETHAF-EGPKGFIANSICYAESDKGRLVVGGMDT 81 (745)
T ss_pred eEEEeccCccchheeEecC-CeEEeecCCCCceeeeeccCcc--cccceec-ccCcceeeccceeccccCcceEeecccc
Confidence 3557899999999998864 4589999999999999865421 1111111 123333444 77775 445689999999
Q ss_pred eEEEEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEEEECCCccccceEEeeeccCCC
Q 048012 219 QAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPG 298 (616)
Q Consensus 219 ~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~ 298 (616)
.+.+|.+.+.. ++..+++|...|.|+....++ .+++||.|.++++|-..... .. ..+|
T Consensus 82 ~i~v~~~~~~~------------P~~~LkgH~snVC~ls~~~~~--~~iSgSWD~TakvW~~~~l~--~~------l~gH 139 (745)
T KOG0301|consen 82 TIIVFKLSQAE------------PLYTLKGHKSNVCSLSIGEDG--TLISGSWDSTAKVWRIGELV--YS------LQGH 139 (745)
T ss_pred eEEEEecCCCC------------chhhhhccccceeeeecCCcC--ceEecccccceEEecchhhh--cc------cCCc
Confidence 99999988765 366789999999999977654 49999999999999875422 11 2477
Q ss_pred CccEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCCCCCceeeecCCCCCeEEEEEcCCCCeEEEEecCCcEEEEeCCCCC
Q 048012 299 RVAVTTCAWDCDGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHSDDITALKFSSDGRILLSRSFDGSLKVWDLRKMK 378 (616)
Q Consensus 299 ~~~v~~~~~sp~g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~v~lwd~~~~~ 378 (616)
...|.+++.-|.+ .+++|+.|.+|++|.-. ..+.++.+|...|+.+++-+++ .|++++.||.|++|++. +
T Consensus 140 ~asVWAv~~l~e~-~~vTgsaDKtIklWk~~------~~l~tf~gHtD~VRgL~vl~~~-~flScsNDg~Ir~w~~~-g- 209 (745)
T KOG0301|consen 140 TASVWAVASLPEN-TYVTGSADKTIKLWKGG------TLLKTFSGHTDCVRGLAVLDDS-HFLSCSNDGSIRLWDLD-G- 209 (745)
T ss_pred chheeeeeecCCC-cEEeccCcceeeeccCC------chhhhhccchhheeeeEEecCC-CeEeecCCceEEEEecc-C-
Confidence 7899999999887 89999999999999864 5888999999999999998765 68899999999999994 3
Q ss_pred CcceEecCCCCCCcceeEEECCCCCEEEEeeccccccCCCceEEEEeCCCCceEEEEecCCCCCeEEEEEcCCCCcEEEE
Q 048012 379 EPLKVFEDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREKLELVSRVGISPACSVVQCAWHPKLNQIFAT 458 (616)
Q Consensus 379 ~~~~~~~~~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~ 458 (616)
..+..+.+ |...+.+++...++..+++++ .|++++||+.. ++.+.+.. +...|+++.+-+++ -|++|
T Consensus 210 e~l~~~~g--htn~vYsis~~~~~~~Ivs~g-------EDrtlriW~~~--e~~q~I~l-PttsiWsa~~L~Ng-DIvvg 276 (745)
T KOG0301|consen 210 EVLLEMHG--HTNFVYSISMALSDGLIVSTG-------EDRTLRIWKKD--ECVQVITL-PTTSIWSAKVLLNG-DIVVG 276 (745)
T ss_pred ceeeeeec--cceEEEEEEecCCCCeEEEec-------CCceEEEeecC--ceEEEEec-CccceEEEEEeeCC-CEEEe
Confidence 33444444 445599999888899999998 99999999977 88888876 45579999888885 46777
Q ss_pred eccCCCCceEEEeccc
Q 048012 459 AGDKSQGGTHILYDPR 474 (616)
Q Consensus 459 ~~d~~~~~~~~v~~~~ 474 (616)
++ ++.++||...
T Consensus 277 ~S----DG~VrVfT~~ 288 (745)
T KOG0301|consen 277 GS----DGRVRVFTVD 288 (745)
T ss_pred cc----CceEEEEEec
Confidence 76 7889998844
No 108
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=1.6e-24 Score=223.92 Aligned_cols=279 Identities=16% Similarity=0.243 Sum_probs=192.7
Q ss_pred CCCCceEEEEecCCCCeEEEEeCCCeEEEEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcC---CCC-CEEEEE
Q 048012 194 SEGHQVRNLSWSPTSDRFLCVTGSAQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHP---KTK-ETILTS 269 (616)
Q Consensus 194 ~~~~~v~~l~~sp~g~~l~~~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p---~~~-~~l~s~ 269 (616)
.|.+.|+++.||+||+|||+|+.|+.|+||.+...+......++.. ++.....-.+.+..+.-.+ .+. ...-.+
T Consensus 265 ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~--~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~ 342 (712)
T KOG0283|consen 265 AHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSS--CMYFEYNANSQIEPSTSSEEKISSRTSSSRKG 342 (712)
T ss_pred ccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccc--hhhhhhhhccccCccccccccccccccccccc
Confidence 6788899999999999999999999999999876443222111100 0000000000010000000 000 011112
Q ss_pred eCCCCEEEEECCCccccceEEeeeccCCCCccEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCCCCCceeeecCCCCCeE
Q 048012 270 SEDGSLRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWDCDGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHSDDIT 349 (616)
Q Consensus 270 s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~ 349 (616)
.....+ +.+......... ......+|...|..+.|+.+ ++|++++.|.+|+||++... .++..+ .|..-|+
T Consensus 343 ~~s~~~-~~p~~~f~f~ek--P~~ef~GHt~DILDlSWSKn-~fLLSSSMDKTVRLWh~~~~----~CL~~F-~HndfVT 413 (712)
T KOG0283|consen 343 SQSPCV-LLPLKAFVFSEK--PFCEFKGHTADILDLSWSKN-NFLLSSSMDKTVRLWHPGRK----ECLKVF-SHNDFVT 413 (712)
T ss_pred cCCccc-cCCCcccccccc--chhhhhccchhheecccccC-CeeEeccccccEEeecCCCc----ceeeEE-ecCCeeE
Confidence 222222 222211110000 01122477788999999975 58899999999999999854 455554 5999999
Q ss_pred EEEEcC-CCCeEEEEecCCcEEEEeCCCCCCcceEecCCCCCCcceeEEECCCCCEEEEeeccccccCCCceEEEEeCCC
Q 048012 350 ALKFSS-DGRILLSRSFDGSLKVWDLRKMKEPLKVFEDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREK 428 (616)
Q Consensus 350 ~l~~sp-dg~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~ 428 (616)
||+|+| |.+|+++|+.||.|+||++... .+..+..+. .-|++++|.|||++.++|+ .+|.++||++..
T Consensus 414 cVaFnPvDDryFiSGSLD~KvRiWsI~d~--~Vv~W~Dl~--~lITAvcy~PdGk~avIGt-------~~G~C~fY~t~~ 482 (712)
T KOG0283|consen 414 CVAFNPVDDRYFISGSLDGKVRLWSISDK--KVVDWNDLR--DLITAVCYSPDGKGAVIGT-------FNGYCRFYDTEG 482 (712)
T ss_pred EEEecccCCCcEeecccccceEEeecCcC--eeEeehhhh--hhheeEEeccCCceEEEEE-------eccEEEEEEccC
Confidence 999999 8899999999999999999753 244444444 4599999999999999999 899999999999
Q ss_pred CceEEEEecCC-------CCCeEEEEEcCCCCc-EEEEeccCCCCceEEEecc---------------------cCCCCC
Q 048012 429 LELVSRVGISP-------ACSVVQCAWHPKLNQ-IFATAGDKSQGGTHILYDP---------------------RLSERG 479 (616)
Q Consensus 429 ~~~~~~~~~~~-------~~~v~~~~~~p~~~~-l~~~~~d~~~~~~~~v~~~---------------------~~s~~g 479 (616)
.+++....+.. +..|+.+.|.|...- |++++. +..++||+. .|+.||
T Consensus 483 lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSn----DSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dg 558 (712)
T KOG0283|consen 483 LKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSN----DSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDG 558 (712)
T ss_pred CeEEEeeeEeeccCccccCceeeeeEecCCCCCeEEEecC----CCceEEEeccchhhhhhhcccccCCcceeeeEccCC
Confidence 88877765432 236999999987653 677766 788999995 377899
Q ss_pred cEEEEecCCcceecccccC
Q 048012 480 ALVCVARAPRKKSVDDFEV 498 (616)
Q Consensus 480 ~~l~s~~~d~~~~~wd~~~ 498 (616)
++|++++.|..|.+|++..
T Consensus 559 k~IVs~seDs~VYiW~~~~ 577 (712)
T KOG0283|consen 559 KHIVSASEDSWVYIWKNDS 577 (712)
T ss_pred CEEEEeecCceEEEEeCCC
Confidence 9999999999999999843
No 109
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.93 E-value=8.9e-24 Score=192.28 Aligned_cols=297 Identities=21% Similarity=0.358 Sum_probs=219.2
Q ss_pred cCCcccEEEEEECC-CCCEEEEEEcCCcEEEEeCCCCcccc--------cc--ceecCCCCCCceEEEEecCC-CCeEEE
Q 048012 146 KGHTKIVSALAVDH-SGSRVLSGSYDYTVRMYDFQGMNSRL--------QS--FRQLEPSEGHQVRNLSWSPT-SDRFLC 213 (616)
Q Consensus 146 ~~H~~~V~~v~~sp-~g~~lasgs~Dg~i~iwd~~~~~~~~--------~~--~~~~~~~~~~~v~~l~~sp~-g~~l~~ 213 (616)
.-|.+.|+++.+.+ .|+++++|+.||.|.|||++...... .+ -+.....|...|.++.|-|- ...+.+
T Consensus 40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFts 119 (397)
T KOG4283|consen 40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTS 119 (397)
T ss_pred ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeec
Confidence 46889999999987 58999999999999999998643111 11 22334456778999999984 456778
Q ss_pred EeCCCeEEEEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCC--CCEEEEEeCCCCEEEEECCCccccceEEe
Q 048012 214 VTGSAQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKT--KETILTSSEDGSLRIWDVNEFKSQKQVIK 291 (616)
Q Consensus 214 ~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~--~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~ 291 (616)
++.|.+++|||.++.+..... .....|..-+|+|-. ..++++|..|-.|++-|+..+.....+
T Consensus 120 sSFDhtlKVWDtnTlQ~a~~F-------------~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~L-- 184 (397)
T KOG4283|consen 120 SSFDHTLKVWDTNTLQEAVDF-------------KMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTL-- 184 (397)
T ss_pred ccccceEEEeecccceeeEEe-------------ecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeee--
Confidence 889999999999976643221 123345555565532 247888888999999999988766555
Q ss_pred eeccCCCCccEEEEEECCCCCe-EEEEeCCCcEEEEeCCCCCC-----------CCCceeeecCCCCCeEEEEEcCCCCe
Q 048012 292 PKLARPGRVAVTTCAWDCDGKC-IAGGIGDGSIQVWNLKPGWG-----------SRPDIHVEKGHSDDITALKFSSDGRI 359 (616)
Q Consensus 292 ~~~~~~~~~~v~~~~~sp~g~~-l~~g~~dg~I~iwd~~~~~~-----------~~~~~~~~~~h~~~V~~l~~spdg~~ 359 (616)
.+|+..|.++.|+|...+ |++|+.||.|++||++.... ..+.+....+|.+.|.+++|+.++.+
T Consensus 185 ----sGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~ 260 (397)
T KOG4283|consen 185 ----SGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARY 260 (397)
T ss_pred ----ccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchh
Confidence 478889999999998765 78999999999999986411 11223345678899999999999999
Q ss_pred EEEEecCCcEEEEeCCCCCCcceEecCCCCCCcceeEEE---CCCCCEEEEeeccccccCCCceEEEEeCCCCceEEEEe
Q 048012 360 LLSRSFDGSLKVWDLRKMKEPLKVFEDLPNNYAQTNVAF---SPDEQLFLTGTSVERESTTGGLLCFYDREKLELVSRVG 436 (616)
Q Consensus 360 l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~v~~v~f---spdg~~l~~gs~~~~~~~~dg~i~iwd~~~~~~~~~~~ 436 (616)
|++++.|..+++|+..++...++.+....++. -+.++| +-+...++.-- .++.+.++++-.+..++.+.
T Consensus 261 l~~~gtd~r~r~wn~~~G~ntl~~~g~~~~n~-~~~~~~~~~~~~s~vfv~~p-------~~~~lall~~~sgs~ir~l~ 332 (397)
T KOG4283|consen 261 LASCGTDDRIRVWNMESGRNTLREFGPIIHNQ-TTSFAVHIQSMDSDVFVLFP-------NDGSLALLNLLEGSFVRRLS 332 (397)
T ss_pred hhhccCccceEEeecccCcccccccccccccc-cccceEEEeecccceEEEEe-------cCCeEEEEEccCceEEEeee
Confidence 99999999999999988766555443322221 112222 22222222222 56899999999999999998
Q ss_pred cCCCCCeEEEEEcCCCCcEEEEeccCCCCceEEEeccc
Q 048012 437 ISPACSVVQCAWHPKLNQIFATAGDKSQGGTHILYDPR 474 (616)
Q Consensus 437 ~~~~~~v~~~~~~p~~~~l~~~~~d~~~~~~~~v~~~~ 474 (616)
. |...|.++++.|+-.+.+++.- ++.+..|.++
T Consensus 333 ~-h~k~i~c~~~~~~fq~~~tg~~----d~ni~~w~p~ 365 (397)
T KOG4283|consen 333 T-HLKRINCAAYRPDFEQCFTGDM----NGNIYMWSPA 365 (397)
T ss_pred c-ccceeeEEeecCchhhhhcccc----CCcccccccc
Confidence 7 4678999999999999999987 6677777764
No 110
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=2.3e-23 Score=216.26 Aligned_cols=274 Identities=18% Similarity=0.242 Sum_probs=211.9
Q ss_pred cCCcccEEEEEECCCCCEEEEEEcCCcEEEEeCCCCccccccceecCCCCCCceEEEEecCCCCeEEEEeCCCeEEEEEC
Q 048012 146 KGHTKIVSALAVDHSGSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSDRFLCVTGSAQAKIYDR 225 (616)
Q Consensus 146 ~~H~~~V~~v~~sp~g~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~s~d~~v~vwd~ 225 (616)
..|+..-+.|+|.|+|.+|++++.||.|++|+........ ..+. .++..|.+++. .+.+|++++.+++|.+|.+
T Consensus 10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P---~ti~-~~g~~v~~ia~--~s~~f~~~s~~~tv~~y~f 83 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEP---ETID-ISGELVSSIAC--YSNHFLTGSEQNTVLRYKF 83 (933)
T ss_pred hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCC---chhh-ccCceeEEEee--cccceEEeeccceEEEeeC
Confidence 4799999999999999999999999999999976532111 1111 14445666555 4559999999999999998
Q ss_pred CCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEEEECCCccccceEEeeeccCCCCccEEEE
Q 048012 226 DGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPGRVAVTTC 305 (616)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~ 305 (616)
...+.... +...+-++++++|+-+| .+++.||.|-.|++-++.+......+ .+|..+|.++
T Consensus 84 ps~~~~~i------------L~Rftlp~r~~~v~g~g-~~iaagsdD~~vK~~~~~D~s~~~~l------rgh~apVl~l 144 (933)
T KOG1274|consen 84 PSGEEDTI------------LARFTLPIRDLAVSGSG-KMIAAGSDDTAVKLLNLDDSSQEKVL------RGHDAPVLQL 144 (933)
T ss_pred CCCCccce------------eeeeeccceEEEEecCC-cEEEeecCceeEEEEeccccchheee------cccCCceeee
Confidence 87653221 34456788999999977 59999999999999999876554443 4677799999
Q ss_pred EECCCCCeEEEEeCCCcEEEEeCCCCCCCCCceeeecC-------C-CCCeEEEEEcCCCCeEEEEecCCcEEEEeCCCC
Q 048012 306 AWDCDGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKG-------H-SDDITALKFSSDGRILLSRSFDGSLKVWDLRKM 377 (616)
Q Consensus 306 ~~sp~g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~-------h-~~~V~~l~~spdg~~l~s~s~Dg~v~lwd~~~~ 377 (616)
.|+|++++||+.+.||.|++||+..+. +...+.+ - ...+..++|+|+|..|+..+.|++|++|+....
T Consensus 145 ~~~p~~~fLAvss~dG~v~iw~~~~~~----~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~w 220 (933)
T KOG1274|consen 145 SYDPKGNFLAVSSCDGKVQIWDLQDGI----LSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGW 220 (933)
T ss_pred eEcCCCCEEEEEecCceEEEEEcccch----hhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCc
Confidence 999999999999999999999999762 2222221 1 345678999999888888999999999998865
Q ss_pred CCcceEecCCCCCCcceeEEECCCCCEEEEeeccccccCCCceEEEEeCCCCceEEEEecCCCCCeEEEEEcCCCCcEEE
Q 048012 378 KEPLKVFEDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREKLELVSRVGISPACSVVQCAWHPKLNQIFA 457 (616)
Q Consensus 378 ~~~~~~~~~~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~ 457 (616)
....... ...+...++.+.|+|+|+|||+++ .+|.|.|||..+.+. ......|.+++|.|+.+.|-.
T Consensus 221 e~~f~Lr-~~~~ss~~~~~~wsPnG~YiAAs~-------~~g~I~vWnv~t~~~-----~~~~~~Vc~~aw~p~~n~it~ 287 (933)
T KOG1274|consen 221 ELQFKLR-DKLSSSKFSDLQWSPNGKYIAAST-------LDGQILVWNVDTHER-----HEFKRAVCCEAWKPNANAITL 287 (933)
T ss_pred eeheeec-ccccccceEEEEEcCCCcEEeeec-------cCCcEEEEecccchh-----ccccceeEEEecCCCCCeeEE
Confidence 5433333 333334489999999999999999 999999999998333 123467999999999988876
Q ss_pred Eecc
Q 048012 458 TAGD 461 (616)
Q Consensus 458 ~~~d 461 (616)
....
T Consensus 288 ~~~~ 291 (933)
T KOG1274|consen 288 ITAL 291 (933)
T ss_pred Eeec
Confidence 6653
No 111
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=1.5e-24 Score=220.73 Aligned_cols=283 Identities=14% Similarity=0.236 Sum_probs=210.4
Q ss_pred cEEEEEECCCCCEEEEEEcCCcEEEEeCCCCccccccceec--CCCCCCceEEEEecC-CCCeEEEEeCCCeEEEEECCC
Q 048012 151 IVSALAVDHSGSRVLSGSYDYTVRMYDFQGMNSRLQSFRQL--EPSEGHQVRNLSWSP-TSDRFLCVTGSAQAKIYDRDG 227 (616)
Q Consensus 151 ~V~~v~~sp~g~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~--~~~~~~~v~~l~~sp-~g~~l~~~s~d~~v~vwd~~~ 227 (616)
...+|...++-..|+.++. ..++||.+............. .......+..|.|+. ..++|++++..|.|.+||+..
T Consensus 41 ~~nAIs~nr~~~qiv~AGr-s~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk 119 (839)
T KOG0269|consen 41 KANAISVNRDINQIVVAGR-SLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWDLNK 119 (839)
T ss_pred ccceEeecCCcceeEEecc-cceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcEEEEecCc
Confidence 3456667788777887764 468888887543322222111 111122466788874 357799999999999999985
Q ss_pred CeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEEEECCCccccceEEeeeccCCCCccEEEEEE
Q 048012 228 LTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAW 307 (616)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 307 (616)
..- ...+..+..|...++++.||+...++|++|+.||+|++||++..+....+.. ....|..|.|
T Consensus 120 ~~r---------nk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~------nSESiRDV~f 184 (839)
T KOG0269|consen 120 SIR---------NKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRS------NSESIRDVKF 184 (839)
T ss_pred ccc---------chhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccc------cchhhhceee
Confidence 210 0124457899999999999999999999999999999999998665554432 2237999999
Q ss_pred CC-CCCeEEEEeCCCcEEEEeCCCCCCCCCceeeecCCCCCeEEEEEcCCCCeEEEEecCCcEEEEeCCCCC-CcceEec
Q 048012 308 DC-DGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHSDDITALKFSSDGRILLSRSFDGSLKVWDLRKMK-EPLKVFE 385 (616)
Q Consensus 308 sp-~g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~v~lwd~~~~~-~~~~~~~ 385 (616)
+| .+..|+++...|.|++||+|.. ......+.+|.++|.|+.|+|++.+|||||.|++|+|||..... .+..++.
T Consensus 185 sp~~~~~F~s~~dsG~lqlWDlRqp---~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tIn 261 (839)
T KOG0269|consen 185 SPGYGNKFASIHDSGYLQLWDLRQP---DRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTIN 261 (839)
T ss_pred ccCCCceEEEecCCceEEEeeccCc---hhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEEe
Confidence 99 5788999999999999999974 46778899999999999999999999999999999999998533 2333332
Q ss_pred CCCCCCcceeEEECCCCCEEEEeeccccccCCCceEEEEeCCCCceEEEEecCCCCCeEEEEEcCCCCcEEEEe
Q 048012 386 DLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREKLELVSRVGISPACSVVQCAWHPKLNQIFATA 459 (616)
Q Consensus 386 ~~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~ 459 (616)
..+++.+|.|-|..++.++.++. ..|-.|+|||++..=.....-..|...++.++|......++-++
T Consensus 262 ---Tiapv~rVkWRP~~~~hLAtcsm----v~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~ 328 (839)
T KOG0269|consen 262 ---TIAPVGRVKWRPARSYHLATCSM----VVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRINLWSC 328 (839)
T ss_pred ---ecceeeeeeeccCccchhhhhhc----cccceEEEEeeccccccceeeeccCccccceeccCCCceeeEee
Confidence 44679999999987765544432 25788999999877665555456888899999987444444443
No 112
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.93 E-value=4.1e-24 Score=205.86 Aligned_cols=235 Identities=21% Similarity=0.369 Sum_probs=192.6
Q ss_pred cCCcccEEEEEECCCCCEEEEEEcCCcEEEEeCCCCccccccceecCCCCCCceEEEEecCCCCeEEEEeCCCeEEEEEC
Q 048012 146 KGHTKIVSALAVDHSGSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSDRFLCVTGSAQAKIYDR 225 (616)
Q Consensus 146 ~~H~~~V~~v~~sp~g~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~s~d~~v~vwd~ 225 (616)
++|.+.|.++++++||++||+|+.|..|.||+..++. .......|...|.+++|--....|++++.|..|+||++
T Consensus 199 ~~h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t~e-----hv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~ 273 (479)
T KOG0299|consen 199 KGHVKEILTLAVSSDGKYLATGGRDRHVQIWDCDTLE-----HVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSI 273 (479)
T ss_pred ccccceeEEEEEcCCCcEEEecCCCceEEEecCcccc-----hhhcccccccceeeeeeecCccceeeeecCCceEEEeh
Confidence 4899999999999999999999999999999998763 22235578889999999988889999999999999999
Q ss_pred CCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEEEECCCccccceEEeeeccCCCCccEEEE
Q 048012 226 DGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPGRVAVTTC 305 (616)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~ 305 (616)
+.... +.++.+|...|..+...... ..+.+|+.|+++++|++.... . .+. .++.+.+-|+
T Consensus 274 ~~~s~------------vetlyGHqd~v~~IdaL~re-R~vtVGgrDrT~rlwKi~ees-q-lif-----rg~~~sidcv 333 (479)
T KOG0299|consen 274 DQLSY------------VETLYGHQDGVLGIDALSRE-RCVTVGGRDRTVRLWKIPEES-Q-LIF-----RGGEGSIDCV 333 (479)
T ss_pred hHhHH------------HHHHhCCccceeeechhccc-ceEEeccccceeEEEeccccc-e-eee-----eCCCCCeeeE
Confidence 86654 55578999999999887655 456666699999999995421 1 121 2445578899
Q ss_pred EECCCCCeEEEEeCCCcEEEEeCCCCCCCCCceeeecCCC-----------CCeEEEEEcCCCCeEEEEecCCcEEEEeC
Q 048012 306 AWDCDGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHS-----------DDITALKFSSDGRILLSRSFDGSLKVWDL 374 (616)
Q Consensus 306 ~~sp~g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~h~-----------~~V~~l~~spdg~~l~s~s~Dg~v~lwd~ 374 (616)
+|-. ...+++|+.+|.|.||++... +++.....+|. .+|++|+..|..+++++|+.+|.|+||-+
T Consensus 334 ~~In-~~HfvsGSdnG~IaLWs~~KK---kplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i 409 (479)
T KOG0299|consen 334 AFIN-DEHFVSGSDNGSIALWSLLKK---KPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKI 409 (479)
T ss_pred EEec-ccceeeccCCceEEEeeeccc---CceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEe
Confidence 9864 467899999999999999863 34444444443 38999999999999999999999999999
Q ss_pred CCCCCcceEecCCCCCCcceeEEECCCCCEEEEee
Q 048012 375 RKMKEPLKVFEDLPNNYAQTNVAFSPDEQLFLTGT 409 (616)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~gs 409 (616)
..+-..+..+..++-.+.|++++|+++|+.|++|.
T Consensus 410 ~~g~r~i~~l~~ls~~GfVNsl~f~~sgk~ivagi 444 (479)
T KOG0299|consen 410 EDGLRAINLLYSLSLVGFVNSLAFSNSGKRIVAGI 444 (479)
T ss_pred cCCccccceeeecccccEEEEEEEccCCCEEEEec
Confidence 98767777777777778899999999999888886
No 113
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=1.2e-22 Score=187.75 Aligned_cols=254 Identities=17% Similarity=0.262 Sum_probs=199.4
Q ss_pred CCCceEEEEecCCCCeEEEEeCCCeEEEEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeC--C
Q 048012 195 EGHQVRNLSWSPTSDRFLCVTGSAQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSE--D 272 (616)
Q Consensus 195 ~~~~v~~l~~sp~g~~l~~~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~--D 272 (616)
..+.|.++.|+.+|.+|++++.|..++|||...+.. ++.+..+...|..++|.... +.++.++. |
T Consensus 13 ~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~------------~~ti~skkyG~~~~~Fth~~-~~~i~sStk~d 79 (311)
T KOG1446|consen 13 TNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQ------------VKTINSKKYGVDLACFTHHS-NTVIHSSTKED 79 (311)
T ss_pred CCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCce------------eeEeecccccccEEEEecCC-ceEEEccCCCC
Confidence 466799999999999999999999999999887653 44456666778888887655 45666665 8
Q ss_pred CCEEEEECCCccccceEEeeeccCCCCccEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCCCCCceeeecCCCCCeEEEE
Q 048012 273 GSLRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWDCDGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHSDDITALK 352 (616)
Q Consensus 273 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~ 352 (616)
.+||..++.+.+.+..+ .+|...|++++.+|-+..+++++.|++|++||++.. .+...+... .-..++
T Consensus 80 ~tIryLsl~dNkylRYF------~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~----~cqg~l~~~--~~pi~A 147 (311)
T KOG1446|consen 80 DTIRYLSLHDNKYLRYF------PGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVK----KCQGLLNLS--GRPIAA 147 (311)
T ss_pred CceEEEEeecCceEEEc------CCCCceEEEEEecCCCCeEEecccCCeEEeeEecCC----CCceEEecC--CCccee
Confidence 89999999886655443 477779999999999999999999999999999964 333333322 234578
Q ss_pred EcCCCCeEEEEecCCcEEEEeCCCC-CCcceEecCC-CCCCcceeEEECCCCCEEEEeeccccccCCCceEEEEeCCCCc
Q 048012 353 FSSDGRILLSRSFDGSLKVWDLRKM-KEPLKVFEDL-PNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREKLE 430 (616)
Q Consensus 353 ~spdg~~l~s~s~Dg~v~lwd~~~~-~~~~~~~~~~-~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~~~ 430 (616)
|.|+|-++|++.....|+|||+|.. +.|...+.-. ......+.+.|||||++|+.++ ..+.+++.|.-+|.
T Consensus 148 fDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT-------~~s~~~~lDAf~G~ 220 (311)
T KOG1446|consen 148 FDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLST-------NASFIYLLDAFDGT 220 (311)
T ss_pred ECCCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEe-------CCCcEEEEEccCCc
Confidence 9999999999988889999999986 5566666443 3445688999999999999999 89999999999999
Q ss_pred eEEEEecCCCC--CeEEEEEcCCCCcEEEEeccCCCCceEEEecccCCCCCcEEEEecC
Q 048012 431 LVSRVGISPAC--SVVQCAWHPKLNQIFATAGDKSQGGTHILYDPRLSERGALVCVARA 487 (616)
Q Consensus 431 ~~~~~~~~~~~--~v~~~~~~p~~~~l~~~~~d~~~~~~~~v~~~~~s~~g~~l~s~~~ 487 (616)
.+.++...... --....|.|+++.|++++. ++.+.+|++. .|..++.-..
T Consensus 221 ~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~----dg~i~vw~~~---tg~~v~~~~~ 272 (311)
T KOG1446|consen 221 VKSTFSGYPNAGNLPLSATFTPDSKFVLSGSD----DGTIHVWNLE---TGKKVAVLRG 272 (311)
T ss_pred EeeeEeeccCCCCcceeEEECCCCcEEEEecC----CCcEEEEEcC---CCcEeeEecC
Confidence 98888764432 2357788999888888886 6788889884 4555544433
No 114
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=3.5e-24 Score=190.21 Aligned_cols=266 Identities=17% Similarity=0.281 Sum_probs=203.1
Q ss_pred cCCCCCCceEEEEecCCCCeEEEEeCCCeEEEEECCCCeeeeEeeCceeEeecccCCCcccceEEEEE-cCCCCCEEEEE
Q 048012 191 LEPSEGHQVRNLSWSPTSDRFLCVTGSAQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEW-HPKTKETILTS 269 (616)
Q Consensus 191 ~~~~~~~~v~~l~~sp~g~~l~~~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~-~p~~~~~l~s~ 269 (616)
+...|...|..+...--|.+|++++.|+.|+|+.+...... ..+..+.||.++|+.++| ||.-+.+|++|
T Consensus 6 idt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s---------~ll~~L~Gh~GPVwqv~wahPk~G~iLASc 76 (299)
T KOG1332|consen 6 IDTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQS---------KLLAELTGHSGPVWKVAWAHPKFGTILASC 76 (299)
T ss_pred hhhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCc---------eeeeEecCCCCCeeEEeecccccCcEeeEe
Confidence 44456667888888888999999999999999998754321 236668999999999999 56556799999
Q ss_pred eCCCCEEEEECCCccccceEEeeeccCCCCccEEEEEECCC--CCeEEEEeCCCcEEEEeCCCCCCCCCceeeecCCCCC
Q 048012 270 SEDGSLRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWDCD--GKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHSDD 347 (616)
Q Consensus 270 s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~--g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~h~~~ 347 (616)
+.||.|.||.-.+++-.+ ......|...|++++|.|. |-+|++++.||.|.|++.+.. ..........+|.-.
T Consensus 77 sYDgkVIiWke~~g~w~k----~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~-g~w~t~ki~~aH~~G 151 (299)
T KOG1332|consen 77 SYDGKVIIWKEENGRWTK----AYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSS-GGWTTSKIVFAHEIG 151 (299)
T ss_pred ecCceEEEEecCCCchhh----hhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCC-CCccchhhhhccccc
Confidence 999999999987763222 2223456778999999885 668999999999999998764 133445567899999
Q ss_pred eEEEEEcCC---C-----------CeEEEEecCCcEEEEeCCCCCCcce-EecCCCCCCcceeEEECCCC----CEEEEe
Q 048012 348 ITALKFSSD---G-----------RILLSRSFDGSLKVWDLRKMKEPLK-VFEDLPNNYAQTNVAFSPDE----QLFLTG 408 (616)
Q Consensus 348 V~~l~~spd---g-----------~~l~s~s~Dg~v~lwd~~~~~~~~~-~~~~~~~~~~v~~v~fspdg----~~l~~g 408 (616)
|++++|.|- | +.|++|+.|..|+||+..+..-.+. .+.. |...|+.++|.|.- .+|+++
T Consensus 152 vnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~--H~dwVRDVAwaP~~gl~~s~iAS~ 229 (299)
T KOG1332|consen 152 VNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEG--HKDWVRDVAWAPSVGLPKSTIASC 229 (299)
T ss_pred cceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhh--cchhhhhhhhccccCCCceeeEEe
Confidence 999999994 4 5799999999999999987532222 2444 55679999999963 578999
Q ss_pred eccccccCCCceEEEEeCCCC--ceEEEEecCCCCCeEEEEEcCCCCcEEEEeccCCCCceEEEecccCCCCCcEEEEe
Q 048012 409 TSVERESTTGGLLCFYDREKL--ELVSRVGISPACSVVQCAWHPKLNQIFATAGDKSQGGTHILYDPRLSERGALVCVA 485 (616)
Q Consensus 409 s~~~~~~~~dg~i~iwd~~~~--~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~~~~~~~v~~~~~s~~g~~l~s~ 485 (616)
+ .||++.||....- .-..++.......+..+.|+..++.|+++++ +..+.+|-... +|++...+
T Consensus 230 S-------qDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~G----dNkvtlwke~~--~Gkw~~v~ 295 (299)
T KOG1332|consen 230 S-------QDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGG----DNKVTLWKENV--DGKWEEVG 295 (299)
T ss_pred c-------CCCcEEEEEecCccCcccccccccCCcceEEEEEeccccEEEEecC----CcEEEEEEeCC--CCcEEEcc
Confidence 8 9999999986622 1111222123467999999999999999988 77888887653 67765543
No 115
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.92 E-value=1.2e-23 Score=208.27 Aligned_cols=306 Identities=23% Similarity=0.336 Sum_probs=224.1
Q ss_pred CCCCcceEEecCCcccEEEEEECCCCCEEEEEEcCCcEEEEeCCCCccccccceecCCCCCCceEEEEecCCCCe-EEEE
Q 048012 136 QIPMSNEIVLKGHTKIVSALAVDHSGSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSDR-FLCV 214 (616)
Q Consensus 136 ~~p~~~~~~l~~H~~~V~~v~~sp~g~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~-l~~~ 214 (616)
++|......+.||++.|.||..+|.|.+||+|+.||+||||.+.++. +++.+. ....|.||+|+|.++. ++++
T Consensus 387 PFPt~~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgR----cvr~~~--~d~~I~~vaw~P~~~~~vLAv 460 (733)
T KOG0650|consen 387 PFPTRCALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGR----CVRTVQ--FDSEIRSVAWNPLSDLCVLAV 460 (733)
T ss_pred CCcceeeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecce----EEEEEe--ecceeEEEEecCCCCceeEEE
Confidence 67778888999999999999999999999999999999999998864 222222 2346999999998765 3334
Q ss_pred eCCCeEEEEECC-CCeeee------EeeC----------ceeE--------eecccCCCcccceEEEEEcCCCCCEEEEE
Q 048012 215 TGSAQAKIYDRD-GLTLGE------FVKG----------DMYI--------RDLKNTKGHICGLTCGEWHPKTKETILTS 269 (616)
Q Consensus 215 s~d~~v~vwd~~-~~~~~~------~~~~----------~~~~--------~~~~~~~~h~~~v~~~~~~p~~~~~l~s~ 269 (616)
.....+.|.+.. +..+.. +... .++. ..++....|...|..+.||..| .+|++.
T Consensus 461 A~~~~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkG-DYlatV 539 (733)
T KOG0650|consen 461 AVGECVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKG-DYLATV 539 (733)
T ss_pred EecCceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCC-ceEEEe
Confidence 444446565532 211100 0000 0111 1123445678889999999988 478776
Q ss_pred eCC---CCEEEEECCCccccceEEeeeccCCCCccEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCCCCCceeeecCCCC
Q 048012 270 SED---GSLRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWDCDGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHSD 346 (616)
Q Consensus 270 s~D---g~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~h~~ 346 (616)
..+ ..|.|.++.....+..+. ...+.|.++.|+|...+|++++. ..|+|||+... ..+..+.....
T Consensus 540 ~~~~~~~~VliHQLSK~~sQ~PF~------kskG~vq~v~FHPs~p~lfVaTq-~~vRiYdL~kq----elvKkL~tg~k 608 (733)
T KOG0650|consen 540 MPDSGNKSVLIHQLSKRKSQSPFR------KSKGLVQRVKFHPSKPYLFVATQ-RSVRIYDLSKQ----ELVKKLLTGSK 608 (733)
T ss_pred ccCCCcceEEEEecccccccCchh------hcCCceeEEEecCCCceEEEEec-cceEEEehhHH----HHHHHHhcCCe
Confidence 554 468899987655443332 22337899999999999998874 68999999853 56666667778
Q ss_pred CeEEEEEcCCCCeEEEEecCCcEEEEeCCCCCCcceEecCCCCCCcceeEEECCCCCEEEEeeccccccCCCceEEEEeC
Q 048012 347 DITALKFSSDGRILLSRSFDGSLKVWDLRKMKEPLKVFEDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDR 426 (616)
Q Consensus 347 ~V~~l~~spdg~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~ 426 (616)
.|.+++.+|.|..|+.++.|+.+..||+.-...+.+.+..|. ..+++|+|++.-.++++|+ .||.+.||--
T Consensus 609 wiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~--~avr~Va~H~ryPLfas~s-------dDgtv~Vfhg 679 (733)
T KOG0650|consen 609 WISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHE--KAVRSVAFHKRYPLFASGS-------DDGTVIVFHG 679 (733)
T ss_pred eeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhhhh--hhhhhhhhccccceeeeec-------CCCcEEEEee
Confidence 899999999999999999999999999998778888877644 4599999999999999999 8899988852
Q ss_pred C------CCce---EEEEec---CCCCCeEEEEEcCCCCcEEEEeccCCCCceEEEec
Q 048012 427 E------KLEL---VSRVGI---SPACSVVQCAWHPKLNQIFATAGDKSQGGTHILYD 472 (616)
Q Consensus 427 ~------~~~~---~~~~~~---~~~~~v~~~~~~p~~~~l~~~~~d~~~~~~~~v~~ 472 (616)
. ..-+ +..+.. .....|..+.|||...+||++++ ++++++|.
T Consensus 680 ~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGA----d~tirlfT 733 (733)
T KOG0650|consen 680 MVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGA----DGTIRLFT 733 (733)
T ss_pred eeehhhhcCCceEeeeeccCceeecccceEeecccCCCceEEecCC----CceEEeeC
Confidence 2 1111 222322 12234888889999999999998 77888873
No 116
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=5.2e-23 Score=188.62 Aligned_cols=281 Identities=14% Similarity=0.223 Sum_probs=202.3
Q ss_pred EecCCcccEEEEEECCCCCEEEEEEcCCcEEEEeCCCCccccccceecCCCCCCceEEEEecC--CCCeEEEEeCCCeEE
Q 048012 144 VLKGHTKIVSALAVDHSGSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSP--TSDRFLCVTGSAQAK 221 (616)
Q Consensus 144 ~l~~H~~~V~~v~~sp~g~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp--~g~~l~~~s~d~~v~ 221 (616)
.-.+|..-|+|+.|++.|+++|||+.|++|+|||+............. ..|.+.|..+.|.+ -|+.+++++.|+++.
T Consensus 8 i~s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~W-rah~~Si~rV~WAhPEfGqvvA~cS~Drtv~ 86 (361)
T KOG2445|consen 8 IDSGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSW-RAHDGSIWRVVWAHPEFGQVVATCSYDRTVS 86 (361)
T ss_pred cccCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeE-EecCCcEEEEEecCccccceEEEEecCCcee
Confidence 346899999999999999999999999999999986654444333333 35778899999965 489999999999999
Q ss_pred EEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCC-CCEEEEEeCCCCEEEEECCCccccceEEee-------e
Q 048012 222 IYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKT-KETILTSSEDGSLRIWDVNEFKSQKQVIKP-------K 293 (616)
Q Consensus 222 vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~-~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~-------~ 293 (616)
||.-...... ..+..+ ....++......|+.+.|.|.. +-.+++++.||+||||+.-........... .
T Consensus 87 iWEE~~~~~~--~~~~~W-v~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~ 163 (361)
T KOG2445|consen 87 IWEEQEKSEE--AHGRRW-VRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVID 163 (361)
T ss_pred eeeecccccc--ccccee-EEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccC
Confidence 9986422110 011111 2244566778899999999963 347899999999999987653322211111 1
Q ss_pred ccCCCCccEEEEEECCC---CCeEEEEeCC-----CcEEEEeCCCCCCCCCceeeecCCCCCeEEEEEcCC----CCeEE
Q 048012 294 LARPGRVAVTTCAWDCD---GKCIAGGIGD-----GSIQVWNLKPGWGSRPDIHVEKGHSDDITALKFSSD----GRILL 361 (616)
Q Consensus 294 ~~~~~~~~v~~~~~sp~---g~~l~~g~~d-----g~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~spd----g~~l~ 361 (616)
....+.....|+.|++. ..+||+|+.+ +.++||....+......+..+.+|..+|+.|+|.|+ -.+||
T Consensus 164 pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lA 243 (361)
T KOG2445|consen 164 PPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLA 243 (361)
T ss_pred CcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEE
Confidence 11234447889999974 4578888866 578999876653344566778899999999999994 45899
Q ss_pred EEecCCcEEEEeCCCCC----------------CcceEec-CCCCCCcceeEEECCCCCEEEEeeccccccCCCceEEEE
Q 048012 362 SRSFDGSLKVWDLRKMK----------------EPLKVFE-DLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFY 424 (616)
Q Consensus 362 s~s~Dg~v~lwd~~~~~----------------~~~~~~~-~~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iw 424 (616)
+++.|| |+||.++... .++..+. ...|+..|..+.|+-.|..|++.+ .||.|++|
T Consensus 244 vA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStG-------dDG~VRLW 315 (361)
T KOG2445|consen 244 VATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTG-------DDGCVRLW 315 (361)
T ss_pred EeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecC-------CCceeeeh
Confidence 999999 9999997311 1222222 224667799999999999999998 89999999
Q ss_pred eCC---CCceEEEEe
Q 048012 425 DRE---KLELVSRVG 436 (616)
Q Consensus 425 d~~---~~~~~~~~~ 436 (616)
... ..++...+.
T Consensus 316 kany~n~~kC~sv~~ 330 (361)
T KOG2445|consen 316 KANYNNLWKCTSVLK 330 (361)
T ss_pred hhhhhhhheeeeEEe
Confidence 854 334444443
No 117
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=6.1e-23 Score=188.80 Aligned_cols=281 Identities=16% Similarity=0.243 Sum_probs=202.1
Q ss_pred CCCCCCceEEEEecCCCCeEEEEeCCCeEEEEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeC
Q 048012 192 EPSEGHQVRNLSWSPTSDRFLCVTGSAQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSE 271 (616)
Q Consensus 192 ~~~~~~~v~~l~~sp~g~~l~~~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~ 271 (616)
..+|+..|++++|+.+|++|+++++|+.|+||++......+- +.++.. -....-+.+.|.||.+.+++++-.
T Consensus 82 LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eH-------r~~R~n-ve~dhpT~V~FapDc~s~vv~~~~ 153 (420)
T KOG2096|consen 82 LKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEH-------RCIRQN-VEYDHPTRVVFAPDCKSVVVSVKR 153 (420)
T ss_pred hhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhh-------hHhhcc-ccCCCceEEEECCCcceEEEEEcc
Confidence 346888899999999999999999999999999886443211 112211 111245788999999888888888
Q ss_pred CCCEEEEECCCccc---cceEEee---eccCCCCccEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCCCCCceeeecCCC
Q 048012 272 DGSLRIWDVNEFKS---QKQVIKP---KLARPGRVAVTTCAWDCDGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHS 345 (616)
Q Consensus 272 Dg~v~iwd~~~~~~---~~~~~~~---~~~~~~~~~v~~~~~sp~g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~h~ 345 (616)
..+|++|-+...+. ....... .....|...+..+-...++.+|++++.|..|.||+++ | +.+.......
T Consensus 154 g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-G----q~L~~idtnq 228 (420)
T KOG2096|consen 154 GNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-G----QLLQSIDTNQ 228 (420)
T ss_pred CCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-C----ceeeeecccc
Confidence 88999998754321 1111111 1234566677788888889999999999999999998 4 5777777777
Q ss_pred CCeEEEEEcCCCCeEEEEecCCcEEEEeCCC-----CCCcceEecCCCCCCcceeEEECCCCCEEEEeeccccccCCCce
Q 048012 346 DDITALKFSSDGRILLSRSFDGSLKVWDLRK-----MKEPLKVFEDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGL 420 (616)
Q Consensus 346 ~~V~~l~~spdg~~l~s~s~Dg~v~lwd~~~-----~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~ 420 (616)
..-+..+.||+|++|++++.---|++|.+-- .+...+.+.-..|...|..++||++.+.+++.+ .||.
T Consensus 229 ~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvS-------kDG~ 301 (420)
T KOG2096|consen 229 SSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVS-------KDGK 301 (420)
T ss_pred ccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEe-------cCCc
Confidence 7778899999999999999999999998731 223344444445667799999999999999999 9999
Q ss_pred EEEEeCCC-------CceEEEEe---cCCCCCeEEEEEcCCCCcEEEEeccC---------------CCCceEEEecccC
Q 048012 421 LCFYDREK-------LELVSRVG---ISPACSVVQCAWHPKLNQIFATAGDK---------------SQGGTHILYDPRL 475 (616)
Q Consensus 421 i~iwd~~~-------~~~~~~~~---~~~~~~v~~~~~~p~~~~l~~~~~d~---------------~~~~~~~v~~~~~ 475 (616)
++|||+.- .+.+.... ...++....+..+|.+..|+++.+.. -.-|...|-+++|
T Consensus 302 wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~gs~l~~~~se~g~~~~~~e~~h~~~Is~is~ 381 (420)
T KOG2096|consen 302 WRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFGSDLKVFASEDGKDYPELEDIHSTTISSISY 381 (420)
T ss_pred EEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeecCCceEEEEcccCccchhHHHhhcCceeeEEe
Confidence 99999641 12222221 11223455888999988888776532 0123334555889
Q ss_pred CCCCcEEEEecCCcceec
Q 048012 476 SERGALVCVARAPRKKSV 493 (616)
Q Consensus 476 s~~g~~l~s~~~d~~~~~ 493 (616)
+++|+++++++ |+.+++
T Consensus 382 ~~~g~~~atcG-dr~vrv 398 (420)
T KOG2096|consen 382 SSDGKYIATCG-DRYVRV 398 (420)
T ss_pred cCCCcEEeeec-ceeeee
Confidence 99999999985 555543
No 118
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.92 E-value=6.8e-23 Score=206.35 Aligned_cols=296 Identities=16% Similarity=0.271 Sum_probs=223.7
Q ss_pred EEEECCCCCEEEEEEcCCcEEEEeCCCCccccccceecCCCCCCceEEEEecCC-----------CCeEEEEeCCCeEEE
Q 048012 154 ALAVDHSGSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPT-----------SDRFLCVTGSAQAKI 222 (616)
Q Consensus 154 ~v~~sp~g~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~-----------g~~l~~~s~d~~v~v 222 (616)
++.|++....|.+.-.|..|+|||+......-+.... ..|...|+.+.--|. ...+++++.|++|++
T Consensus 329 A~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~s~--lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRl 406 (1080)
T KOG1408|consen 329 ACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCSSM--LYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRL 406 (1080)
T ss_pred EEEecCCCceEEEEEcCceEEEEeccccccccceeee--eeccceeeeeccccccccCcccccCCccceeEecCCCcEEE
Confidence 6689999999999999999999999875543332222 235555776665442 124889999999999
Q ss_pred EECCCCeeeeEeeCcee-------------------------EeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEE
Q 048012 223 YDRDGLTLGEFVKGDMY-------------------------IRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRI 277 (616)
Q Consensus 223 wd~~~~~~~~~~~~~~~-------------------------~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~i 277 (616)
|+++...-........+ .+....+-+...++.+++.+|++ +.|++|..-|+|||
T Consensus 407 W~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~g-qhLAsGDr~GnlrV 485 (1080)
T KOG1408|consen 407 WDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDG-QHLASGDRGGNLRV 485 (1080)
T ss_pred eecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCc-ceecccCccCceEE
Confidence 99987322111111111 11222233455679999999988 58999999999999
Q ss_pred EECCCccccceEEeeeccCCCCccEEEEEECC---CCCeEEEEeCCCcEEEEeCCCCCCCCCceeeecCCCCCeEEEEE-
Q 048012 278 WDVNEFKSQKQVIKPKLARPGRVAVTTCAWDC---DGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHSDDITALKF- 353 (616)
Q Consensus 278 wd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp---~g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~- 353 (616)
|++........+ ..|...|.|+.|+. ..++||+++.|..|++||+...+ .++.++.+|...|++|.|
T Consensus 486 y~Lq~l~~~~~~------eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny---~l~qtld~HSssITsvKFa 556 (1080)
T KOG1408|consen 486 YDLQELEYTCFM------EAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNY---DLVQTLDGHSSSITSVKFA 556 (1080)
T ss_pred EEehhhhhhhhe------ecccceeEEEeecCchhhhHhhhhccCCceEEEEeccccc---chhhhhcccccceeEEEEe
Confidence 999865443332 35666899999986 35789999999999999987653 455566666666665555
Q ss_pred ------------------------------------------------cCCCCeEEEEecCCcEEEEeCCCCCCcceEec
Q 048012 354 ------------------------------------------------SSDGRILLSRSFDGSLKVWDLRKMKEPLKVFE 385 (616)
Q Consensus 354 ------------------------------------------------spdg~~l~s~s~Dg~v~lwd~~~~~~~~~~~~ 385 (616)
.|..+++++++.|..|+|||+.+++. .+.|+
T Consensus 557 ~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq-~k~FK 635 (1080)
T KOG1408|consen 557 CNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQ-VKSFK 635 (1080)
T ss_pred ecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccce-eeeec
Confidence 44456788999999999999998665 45554
Q ss_pred C-CCCCCcceeEEECCCCCEEEEeeccccccCCCceEEEEeCCCCceEEEEecCCCCCeEEEEEcCCCCcEEEEeccCCC
Q 048012 386 D-LPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREKLELVSRVGISPACSVVQCAWHPKLNQIFATAGDKSQ 464 (616)
Q Consensus 386 ~-~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~~ 464 (616)
+ +.+.+....+...|.|-||++.+ .|.+|.|||..+++++.++.. |...|+.+.|.++.+.|++.++
T Consensus 636 gs~~~eG~lIKv~lDPSgiY~atSc-------sdktl~~~Df~sgEcvA~m~G-HsE~VTG~kF~nDCkHlISvsg---- 703 (1080)
T KOG1408|consen 636 GSRDHEGDLIKVILDPSGIYLATSC-------SDKTLCFVDFVSGECVAQMTG-HSEAVTGVKFLNDCKHLISVSG---- 703 (1080)
T ss_pred ccccCCCceEEEEECCCccEEEEee-------cCCceEEEEeccchhhhhhcC-cchheeeeeecccchhheeecC----
Confidence 4 45556788899999999999999 899999999999999998864 7788999999999999999998
Q ss_pred CceEEEeccc
Q 048012 465 GGTHILYDPR 474 (616)
Q Consensus 465 ~~~~~v~~~~ 474 (616)
++++.||.+.
T Consensus 704 DgCIFvW~lp 713 (1080)
T KOG1408|consen 704 DGCIFVWKLP 713 (1080)
T ss_pred CceEEEEECc
Confidence 7899999865
No 119
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.92 E-value=3.1e-23 Score=206.96 Aligned_cols=293 Identities=17% Similarity=0.266 Sum_probs=212.0
Q ss_pred CCEEEEEEcCCcEEEEeCCCCccccc-cceecCCCCCCceEEEEecCCCCeEEEEeCCCeEEEEECCCCeeeeEeeCcee
Q 048012 161 GSRVLSGSYDYTVRMYDFQGMNSRLQ-SFRQLEPSEGHQVRNLSWSPTSDRFLCVTGSAQAKIYDRDGLTLGEFVKGDMY 239 (616)
Q Consensus 161 g~~lasgs~Dg~i~iwd~~~~~~~~~-~~~~~~~~~~~~v~~l~~sp~g~~l~~~s~d~~v~vwd~~~~~~~~~~~~~~~ 239 (616)
...||.+..||.|.++|.....-... ........|...|..+.|-|....|+++++|.++++||+.+..+..
T Consensus 64 eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G------- 136 (720)
T KOG0321|consen 64 EHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVG------- 136 (720)
T ss_pred cceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeec-------
Confidence 45899999999999999875422211 1112334678889999999977789999999999999999877532
Q ss_pred EeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEEEECCCccccc--e----EE---------------eeeccCCC
Q 048012 240 IRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQK--Q----VI---------------KPKLARPG 298 (616)
Q Consensus 240 ~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~--~----~~---------------~~~~~~~~ 298 (616)
.....||.+.|.+++|+|.+...|++|+.||.|.|||++-..... . +. .......+
T Consensus 137 ---~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~ 213 (720)
T KOG0321|consen 137 ---GRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAA 213 (720)
T ss_pred ---ceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccc
Confidence 234689999999999999999999999999999999986432100 0 00 00001112
Q ss_pred CccEEE---EEECCCCCeEEEEeC-CCcEEEEeCCCCCCCC----CceeeecCC---CCCeEEEEEcCCCCeEEEEecCC
Q 048012 299 RVAVTT---CAWDCDGKCIAGGIG-DGSIQVWNLKPGWGSR----PDIHVEKGH---SDDITALKFSSDGRILLSRSFDG 367 (616)
Q Consensus 299 ~~~v~~---~~~sp~g~~l~~g~~-dg~I~iwd~~~~~~~~----~~~~~~~~h---~~~V~~l~~spdg~~l~s~s~Dg 367 (616)
...|.+ +.+..|...||+++. |+.|++||++..+... .....+..| .-.+.++.....|.+|++.+.|+
T Consensus 214 s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~ 293 (720)
T KOG0321|consen 214 SNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDN 293 (720)
T ss_pred cCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCC
Confidence 223333 455567888888877 9999999999864211 111222233 23477888888889988888899
Q ss_pred cEEEEeCCCCC-CcceEecCCCCCCcceeEEECCCCCEEEEeeccccccCCCceEEEEeCCCCceEEEEecCCCCCeEEE
Q 048012 368 SLKVWDLRKMK-EPLKVFEDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREKLELVSRVGISPACSVVQC 446 (616)
Q Consensus 368 ~v~lwd~~~~~-~~~~~~~~~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~ 446 (616)
+|++||+.... .++..+.++........-..+|++.+|++|+ .|...++|.+.+.+....+...|.-.|+++
T Consensus 294 sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgS-------sd~~ayiw~vs~~e~~~~~l~Ght~eVt~V 366 (720)
T KOG0321|consen 294 SIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGS-------SDEQAYIWVVSSPEAPPALLLGHTREVTTV 366 (720)
T ss_pred cEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccC-------CCcceeeeeecCccCChhhhhCcceEEEEE
Confidence 99999998754 3455555544333334456799999999999 899999999999887777666788889999
Q ss_pred EEcCCCCcEEEEeccCCCCceEEEecc
Q 048012 447 AWHPKLNQIFATAGDKSQGGTHILYDP 473 (616)
Q Consensus 447 ~~~p~~~~l~~~~~d~~~~~~~~v~~~ 473 (616)
+|.|..-.=+++|.| +..+.||++
T Consensus 367 ~w~pS~~t~v~TcSd---D~~~kiW~l 390 (720)
T KOG0321|consen 367 RWLPSATTPVATCSD---DFRVKIWRL 390 (720)
T ss_pred eeccccCCCceeecc---CcceEEEec
Confidence 999975544444465 889999998
No 120
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.92 E-value=3.6e-24 Score=200.16 Aligned_cols=262 Identities=15% Similarity=0.211 Sum_probs=208.2
Q ss_pred CCCCCceEEEEecCCC-CeEEEEeCCCeEEEEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeC
Q 048012 193 PSEGHQVRNLSWSPTS-DRFLCVTGSAQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSE 271 (616)
Q Consensus 193 ~~~~~~v~~l~~sp~g-~~l~~~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~ 271 (616)
.+|...|.|++=+|.. ..+++|+.||.|+|||+...+. +..+..|.+.|..+++.. ..+++++.
T Consensus 63 ~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~------------~~~f~AH~G~V~Gi~v~~---~~~~tvgd 127 (433)
T KOG0268|consen 63 DGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQREC------------IRTFKAHEGLVRGICVTQ---TSFFTVGD 127 (433)
T ss_pred cccccccchhhcCcchhhhhhccccCceEEEEehhhhhh------------hheeecccCceeeEEecc---cceEEecC
Confidence 4566679999999986 6789999999999999987653 566789999999999986 47899999
Q ss_pred CCCEEEEECCCccccceEEeeeccCCCCccEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCCCCCceeeecCCCCCeEEE
Q 048012 272 DGSLRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWDCDGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHSDDITAL 351 (616)
Q Consensus 272 Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l 351 (616)
|.+|+.|-+... ....+. +...+..+.-+..+..+++++. .|.|||..-. .++..+.-....|.++
T Consensus 128 DKtvK~wk~~~~-p~~til-------g~s~~~gIdh~~~~~~FaTcGe--~i~IWD~~R~----~Pv~smswG~Dti~sv 193 (433)
T KOG0268|consen 128 DKTVKQWKIDGP-PLHTIL-------GKSVYLGIDHHRKNSVFATCGE--QIDIWDEQRD----NPVSSMSWGADSISSV 193 (433)
T ss_pred CcceeeeeccCC-cceeee-------ccccccccccccccccccccCc--eeeecccccC----CccceeecCCCceeEE
Confidence 999999998652 222221 2224666666666778888875 5999998754 4666666666789999
Q ss_pred EEcCCC-CeEEEEecCCcEEEEeCCCCCCcceEecCCCCCCcceeEEECCCCCEEEEeeccccccCCCceEEEEeCCCCc
Q 048012 352 KFSSDG-RILLSRSFDGSLKVWDLRKMKEPLKVFEDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREKLE 430 (616)
Q Consensus 352 ~~spdg-~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~~~ 430 (616)
.|+|-. .+|++|+.|+.|.|||++......++.... ....|+|+|.+-.+++|+ .|..|+.||++...
T Consensus 194 kfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~m----RTN~IswnPeafnF~~a~-------ED~nlY~~DmR~l~ 262 (433)
T KOG0268|consen 194 KFNPVETSILASCASDRSIVLYDLRQASPLKKVILTM----RTNTICWNPEAFNFVAAN-------EDHNLYTYDMRNLS 262 (433)
T ss_pred ecCCCcchheeeeccCCceEEEecccCCccceeeeec----cccceecCccccceeecc-------ccccceehhhhhhc
Confidence 999954 577788899999999999865544444332 256799999777777777 99999999999987
Q ss_pred eEEEEecCCCCCeEEEEEcCCCCcEEEEeccCCCCceEEE--------------------ecccCCCCCcEEEEecCCcc
Q 048012 431 LVSRVGISPACSVVQCAWHPKLNQIFATAGDKSQGGTHIL--------------------YDPRLSERGALVCVARAPRK 490 (616)
Q Consensus 431 ~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~~~~~~~v--------------------~~~~~s~~g~~l~s~~~d~~ 490 (616)
....+...|.+.|.++.|+|.|..+++|+-|+ +++| +.+.+|.|.+++++|+.|+.
T Consensus 263 ~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDk----sIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~n 338 (433)
T KOG0268|consen 263 RPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDK----SIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGN 338 (433)
T ss_pred ccchhhcccceeEEEeccCCCcchhccccccc----eEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCcc
Confidence 77666667888999999999999999999854 4444 44778999999999999999
Q ss_pred eecccccC
Q 048012 491 KSVDDFEV 498 (616)
Q Consensus 491 ~~~wd~~~ 498 (616)
|++|--..
T Consensus 339 vRlWka~A 346 (433)
T KOG0268|consen 339 VRLWKAKA 346 (433)
T ss_pred eeeeecch
Confidence 99998643
No 121
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.92 E-value=7.6e-23 Score=210.04 Aligned_cols=332 Identities=16% Similarity=0.178 Sum_probs=260.4
Q ss_pred EEEEEECCCC--CEEEEEEcCCcEEEEeCCCCccccccceecCCCCCCceEEEEecCCCCeEEEEeCCCeEEEEECCCCe
Q 048012 152 VSALAVDHSG--SRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSDRFLCVTGSAQAKIYDRDGLT 229 (616)
Q Consensus 152 V~~v~~sp~g--~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~s~d~~v~vwd~~~~~ 229 (616)
|+++ ++|.- +.++.|+..|.+.||++.+.. ...........|+++.=+|--+.+++|..+|+|.|+++...+
T Consensus 162 Ital-~HP~TYLNKIvvGs~~G~lql~Nvrt~K-----~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dk 235 (910)
T KOG1539|consen 162 ITAL-LHPSTYLNKIVVGSSQGRLQLWNVRTGK-----VVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDK 235 (910)
T ss_pred eeeE-ecchhheeeEEEeecCCcEEEEEeccCc-----EEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccCc
Confidence 7775 45653 578899999999999998753 222223344679999999999999999999999999998766
Q ss_pred eeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEEEECCCccccceEEeeeccCCCCccEEEEEECC
Q 048012 230 LGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWDC 309 (616)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp 309 (616)
.. ..++..-+.|+.++|..||..++++|+..|.+.+||+...+.+..+.. .|.+.|....|-+
T Consensus 236 il------------~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~n-----ah~~sv~~~~fl~ 298 (910)
T KOG1539|consen 236 IL------------MSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRN-----AHYGSVTGATFLP 298 (910)
T ss_pred EE------------EEEEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeec-----cccCCcccceecC
Confidence 42 222333588999999999998999999999999999987665554432 3344788888999
Q ss_pred CCCeEEEEeCCCcEEEEeCCCCCCCCCceeeecCCCCCeEEEEEc-CCCCeEEEEecCCcEEEEeCCCCC------C---
Q 048012 310 DGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHSDDITALKFS-SDGRILLSRSFDGSLKVWDLRKMK------E--- 379 (616)
Q Consensus 310 ~g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~s-pdg~~l~s~s~Dg~v~lwd~~~~~------~--- 379 (616)
....+++++.|.++++|=..++......+....+|..+..+|.|. .+|..+.+++.|++++.+++.... .
T Consensus 299 ~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~ 378 (910)
T KOG1539|consen 299 GEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHN 378 (910)
T ss_pred CCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhccccc
Confidence 999999999999999887666554667788889999999999998 688999999999988888763100 0
Q ss_pred ------------------cceEecC-----------------------------------CC------CCCcceeEEECC
Q 048012 380 ------------------PLKVFED-----------------------------------LP------NNYAQTNVAFSP 400 (616)
Q Consensus 380 ------------------~~~~~~~-----------------------------------~~------~~~~v~~v~fsp 400 (616)
++..+.. +. ....+++++.++
T Consensus 379 ~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~ 458 (910)
T KOG1539|consen 379 KKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSF 458 (910)
T ss_pred ccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEec
Confidence 0000000 00 124578899999
Q ss_pred CCCEEEEeeccccccCCCceEEEEeCCCCceEEEEe--cCCCCCeEEEEEcCCCCcEEEEeccC----------------
Q 048012 401 DEQLFLTGTSVERESTTGGLLCFYDREKLELVSRVG--ISPACSVVQCAWHPKLNQIFATAGDK---------------- 462 (616)
Q Consensus 401 dg~~l~~gs~~~~~~~~dg~i~iwd~~~~~~~~~~~--~~~~~~v~~~~~~p~~~~l~~~~~d~---------------- 462 (616)
.|++.+.|. ..|.|-+|++++|-....+. -.|.+.|+.++..-.++.+++++.++
T Consensus 459 CGNF~~IG~-------S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l 531 (910)
T KOG1539|consen 459 CGNFVFIGY-------SKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSL 531 (910)
T ss_pred cCceEEEec-------cCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeee
Confidence 999999999 79999999999998888773 24778999999999988899988877
Q ss_pred ----------------------------------------CCCceEEEecccCCCCCcEEEEecCCcceecccccCCc--
Q 048012 463 ----------------------------------------SQGGTHILYDPRLSERGALVCVARAPRKKSVDDFEVAP-- 500 (616)
Q Consensus 463 ----------------------------------------~~~~~~~v~~~~~s~~g~~l~s~~~d~~~~~wd~~~~~-- 500 (616)
..||..+|.+++|||||++|++++.|++|++||+.+..
T Consensus 532 ~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lI 611 (910)
T KOG1539|consen 532 RLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLI 611 (910)
T ss_pred ccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCccee
Confidence 24677777779999999999999999999999996543
Q ss_pred -----------eeeCCCCCCcccC
Q 048012 501 -----------VIHNPHALPLFRD 513 (616)
Q Consensus 501 -----------~~~~p~~~~l~~~ 513 (616)
+.|+|.+..|...
T Consensus 612 D~~~vd~~~~sls~SPngD~LAT~ 635 (910)
T KOG1539|consen 612 DGLLVDSPCTSLSFSPNGDFLATV 635 (910)
T ss_pred eeEecCCcceeeEECCCCCEEEEE
Confidence 5578888776644
No 122
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.92 E-value=1.9e-22 Score=185.33 Aligned_cols=237 Identities=19% Similarity=0.294 Sum_probs=182.9
Q ss_pred CCCceEEEEecCCCCeEEEEeCCCeEEEEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCC
Q 048012 195 EGHQVRNLSWSPTSDRFLCVTGSAQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGS 274 (616)
Q Consensus 195 ~~~~v~~l~~sp~g~~l~~~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~ 274 (616)
....|.+|.|+|.+..|++++.||.+++|++.... ++....|..++.+++|.+. ..+++|+.||.
T Consensus 12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~-------------l~~~~~~~~plL~c~F~d~--~~~~~G~~dg~ 76 (323)
T KOG1036|consen 12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANS-------------LKLKFKHGAPLLDCAFADE--STIVTGGLDGQ 76 (323)
T ss_pred ChhceeeEEEcCcCCcEEEEeccCcEEEEeccchh-------------hhhheecCCceeeeeccCC--ceEEEeccCce
Confidence 34569999999999999999999999999998764 3334578899999999985 57999999999
Q ss_pred EEEEECCCccccceEEeeeccCCCCccEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCCCCCceeeecCCCCCeEEEEEc
Q 048012 275 LRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWDCDGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHSDDITALKFS 354 (616)
Q Consensus 275 v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~s 354 (616)
|+++|++++.... + ..|..+|.|+.+++-...+++|+.|++|++||.+.. .....+.. ...|.++..+
T Consensus 77 vr~~Dln~~~~~~--i-----gth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~----~~~~~~d~-~kkVy~~~v~ 144 (323)
T KOG1036|consen 77 VRRYDLNTGNEDQ--I-----GTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNK----VVVGTFDQ-GKKVYCMDVS 144 (323)
T ss_pred EEEEEecCCccee--e-----ccCCCceEEEEeeccCCeEEEcccCccEEEEecccc----cccccccc-CceEEEEecc
Confidence 9999998754321 1 245558999999998899999999999999999853 23333332 3378888876
Q ss_pred CCCCeEEEEecCCcEEEEeCCCCCCcceEecCCCCCCcceeEEECCCCCEEEEeeccccccCCCceEEEEeCCCC----c
Q 048012 355 SDGRILLSRSFDGSLKVWDLRKMKEPLKVFEDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREKL----E 430 (616)
Q Consensus 355 pdg~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~~----~ 430 (616)
|+.|++|+.|..|.+||+++...+.+.. ...-.+.+++|++-|++.-.++++ .+|.|.+=.+... +
T Consensus 145 --g~~LvVg~~~r~v~iyDLRn~~~~~q~r-eS~lkyqtR~v~~~pn~eGy~~sS-------ieGRVavE~~d~s~~~~s 214 (323)
T KOG1036|consen 145 --GNRLVVGTSDRKVLIYDLRNLDEPFQRR-ESSLKYQTRCVALVPNGEGYVVSS-------IEGRVAVEYFDDSEEAQS 214 (323)
T ss_pred --CCEEEEeecCceEEEEEcccccchhhhc-cccceeEEEEEEEecCCCceEEEe-------ecceEEEEccCCchHHhh
Confidence 7899999999999999999987766443 334567799999999988888888 8999887666555 2
Q ss_pred eEEEEecCC--------CCCeEEEEEcCCCCcEEEEeccCCCCceEEEec
Q 048012 431 LVSRVGISP--------ACSVVQCAWHPKLNQIFATAGDKSQGGTHILYD 472 (616)
Q Consensus 431 ~~~~~~~~~--------~~~v~~~~~~p~~~~l~~~~~d~~~~~~~~v~~ 472 (616)
.-..++.+. -.+|++++|||-.+.|++|++ ++.+.+|+
T Consensus 215 kkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGs----DG~V~~Wd 260 (323)
T KOG1036|consen 215 KKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGS----DGIVNIWD 260 (323)
T ss_pred hceeEEeeecccCCceEEEEeceeEeccccceEEecCC----CceEEEcc
Confidence 222222211 135788888888777777777 66777777
No 123
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.91 E-value=9.7e-24 Score=200.50 Aligned_cols=243 Identities=19% Similarity=0.257 Sum_probs=191.7
Q ss_pred eEEecCCcccEEEEEECCCCCEEEEEEcCCcEEEEeCCCCccccccceecCCCCCCceEEEEecCCCCeEEEEeCCCeEE
Q 048012 142 EIVLKGHTKIVSALAVDHSGSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSDRFLCVTGSAQAK 221 (616)
Q Consensus 142 ~~~l~~H~~~V~~v~~sp~g~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~s~d~~v~ 221 (616)
.-+|.|-.+.|+++.|.+++..+++.+.|+.+++|++... .......+|...|+++.|.-....+++++.|.+|+
T Consensus 212 ~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~-----r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK 286 (459)
T KOG0288|consen 212 ISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSL-----RLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIK 286 (459)
T ss_pred hhhhhccCCCcceeeecCCCceEEeecCCCceeeeeccch-----hhhhhhcccccceeeehhhccccceeeccccchhh
Confidence 3467788899999999999999999999999999999864 23334446888999999998877799999999999
Q ss_pred EEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEEEECCCccccceEEeeeccCCCCcc
Q 048012 222 IYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPGRVA 301 (616)
Q Consensus 222 vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~ 301 (616)
+||+...... + ..-....+..+...+ ..+++|-.|++||+||++...+...+.. .+.
T Consensus 287 ~WDl~k~~C~------------k-t~l~~S~cnDI~~~~---~~~~SgH~DkkvRfwD~Rs~~~~~sv~~-------gg~ 343 (459)
T KOG0288|consen 287 LWDLQKAYCS------------K-TVLPGSQCNDIVCSI---SDVISGHFDKKVRFWDIRSADKTRSVPL-------GGR 343 (459)
T ss_pred hhhhhhhhee------------c-cccccccccceEecc---eeeeecccccceEEEeccCCceeeEeec-------Ccc
Confidence 9998864321 1 112233455555542 5789999999999999988765544421 127
Q ss_pred EEEEEECCCCCeEEEEeCCCcEEEEeCCCCCCCCCceeeecCC----CCCeEEEEEcCCCCeEEEEecCCcEEEEeCCCC
Q 048012 302 VTTCAWDCDGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGH----SDDITALKFSSDGRILLSRSFDGSLKVWDLRKM 377 (616)
Q Consensus 302 v~~~~~sp~g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~h----~~~V~~l~~spdg~~l~s~s~Dg~v~lwd~~~~ 377 (616)
|+++..+++|..|.+.+.|.++.+.|+++. .....+.+. ...++.+.|||++.|+++||.||.|+||++.++
T Consensus 344 vtSl~ls~~g~~lLsssRDdtl~viDlRt~----eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tg 419 (459)
T KOG0288|consen 344 VTSLDLSMDGLELLSSSRDDTLKVIDLRTK----EIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTG 419 (459)
T ss_pred eeeEeeccCCeEEeeecCCCceeeeecccc----cEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCc
Confidence 999999999999999999999999999975 344433322 234889999999999999999999999999875
Q ss_pred CCcceEecCCCCCCcceeEEECCCCCEEEEeeccccccCCCceEEEE
Q 048012 378 KEPLKVFEDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFY 424 (616)
Q Consensus 378 ~~~~~~~~~~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iw 424 (616)
+ +...+........|++++|+|.|.+|++++ .++.+.+|
T Consensus 420 K-lE~~l~~s~s~~aI~s~~W~~sG~~Llsad-------k~~~v~lW 458 (459)
T KOG0288|consen 420 K-LEKVLSLSTSNAAITSLSWNPSGSGLLSAD-------KQKAVTLW 458 (459)
T ss_pred e-EEEEeccCCCCcceEEEEEcCCCchhhccc-------CCcceEec
Confidence 4 344444444444699999999999999999 88999998
No 124
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.91 E-value=1.3e-21 Score=196.38 Aligned_cols=271 Identities=15% Similarity=0.165 Sum_probs=189.0
Q ss_pred CCEEEEEEcCCcEEEEeCCCCccccccceecCCCCCCceEEEEecCCCCeE-EEEeCCCeEEEEECCCCeeeeEeeCcee
Q 048012 161 GSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSDRF-LCVTGSAQAKIYDRDGLTLGEFVKGDMY 239 (616)
Q Consensus 161 g~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l-~~~s~d~~v~vwd~~~~~~~~~~~~~~~ 239 (616)
+..+++++.|+.|++||+.+.. ... .+. ....+.+++|+|++..+ ++++.++.|++||..+.+....
T Consensus 1 ~~~~~s~~~d~~v~~~d~~t~~-~~~---~~~--~~~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~------ 68 (300)
T TIGR03866 1 EKAYVSNEKDNTISVIDTATLE-VTR---TFP--VGQRPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGT------ 68 (300)
T ss_pred CcEEEEecCCCEEEEEECCCCc-eEE---EEE--CCCCCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEe------
Confidence 3578899999999999987643 111 121 12346789999999977 4566789999999887653211
Q ss_pred EeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEEEECCCccccceEEeeeccCCCCccEEEEEECCCCCeEEEEeC
Q 048012 240 IRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWDCDGKCIAGGIG 319 (616)
Q Consensus 240 ~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~g~~ 319 (616)
+..+. .+..++|+|++..++++++.++.|++||+.+.+....+. ....+.+++|+|+|++++++..
T Consensus 69 ------~~~~~-~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~-------~~~~~~~~~~~~dg~~l~~~~~ 134 (300)
T TIGR03866 69 ------LPSGP-DPELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIP-------VGVEPEGMAVSPDGKIVVNTSE 134 (300)
T ss_pred ------ccCCC-CccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEee-------CCCCcceEEECCCCCEEEEEec
Confidence 12222 246788999886455666778999999998754333221 1114678999999999999887
Q ss_pred CC-cEEEEeCCCCCCCCCceeeecCCCCCeEEEEEcCCCCeEEEE-ecCCcEEEEeCCCCCCcceEecCC-----CCCCc
Q 048012 320 DG-SIQVWNLKPGWGSRPDIHVEKGHSDDITALKFSSDGRILLSR-SFDGSLKVWDLRKMKEPLKVFEDL-----PNNYA 392 (616)
Q Consensus 320 dg-~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~-s~Dg~v~lwd~~~~~~~~~~~~~~-----~~~~~ 392 (616)
++ .+.+||..++ ....... ....+.+++|++++++|+.+ ..++.|++||+.+... +..+... .....
T Consensus 135 ~~~~~~~~d~~~~----~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~-~~~~~~~~~~~~~~~~~ 208 (300)
T TIGR03866 135 TTNMAHFIDTKTY----EIVDNVL-VDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKV-IKKITFEIPGVHPEAVQ 208 (300)
T ss_pred CCCeEEEEeCCCC----eEEEEEE-cCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCccee-eeeeeecccccccccCC
Confidence 75 4677898764 2322222 22346789999999988654 4699999999987543 2322211 11122
Q ss_pred ceeEEECCCCCEEEEeeccccccCCCceEEEEeCCCCceEEEEecCCCCCeEEEEEcCCCCcEEEEeccCCCCceEEEec
Q 048012 393 QTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREKLELVSRVGISPACSVVQCAWHPKLNQIFATAGDKSQGGTHILYD 472 (616)
Q Consensus 393 v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~~~~~~~v~~ 472 (616)
...++|+|++++++++.. .++.|.+||+.+++.+..+. +...+.+++|+|++..|+++... ++.+.+|+
T Consensus 209 ~~~i~~s~dg~~~~~~~~------~~~~i~v~d~~~~~~~~~~~--~~~~~~~~~~~~~g~~l~~~~~~---~~~i~v~d 277 (300)
T TIGR03866 209 PVGIKLTKDGKTAFVALG------PANRVAVVDAKTYEVLDYLL--VGQRVWQLAFTPDEKYLLTTNGV---SNDVSVID 277 (300)
T ss_pred ccceEECCCCCEEEEEcC------CCCeEEEEECCCCcEEEEEE--eCCCcceEEECCCCCEEEEEcCC---CCeEEEEE
Confidence 457899999998766542 46789999999998877664 33468899999999998887653 67899999
Q ss_pred cc
Q 048012 473 PR 474 (616)
Q Consensus 473 ~~ 474 (616)
+.
T Consensus 278 ~~ 279 (300)
T TIGR03866 278 VA 279 (300)
T ss_pred CC
Confidence 87
No 125
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.91 E-value=1.8e-23 Score=202.82 Aligned_cols=273 Identities=17% Similarity=0.230 Sum_probs=206.8
Q ss_pred CCCCceEEEEecCCCCeEEEEeCCCeEEEEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCC
Q 048012 194 SEGHQVRNLSWSPTSDRFLCVTGSAQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDG 273 (616)
Q Consensus 194 ~~~~~v~~l~~sp~g~~l~~~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg 273 (616)
.|+.-|.++.+|...+++++| +.|.|+|||+....-..- +..+ .......-|.++..+|++ +.|++|+.-.
T Consensus 417 ~HGEvVcAvtIS~~trhVyTg-GkgcVKVWdis~pg~k~P------vsqL-dcl~rdnyiRSckL~pdg-rtLivGGeas 487 (705)
T KOG0639|consen 417 AHGEVVCAVTISNPTRHVYTG-GKGCVKVWDISQPGNKSP------VSQL-DCLNRDNYIRSCKLLPDG-RTLIVGGEAS 487 (705)
T ss_pred ccCcEEEEEEecCCcceeEec-CCCeEEEeeccCCCCCCc------cccc-cccCcccceeeeEecCCC-ceEEeccccc
Confidence 466678889999888877754 578999999985421000 0001 112234568889999988 5899999999
Q ss_pred CEEEEECCCccccceEEeeeccCCCCccEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCCCCCceeeecCCCCCeEEEEE
Q 048012 274 SLRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWDCDGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHSDDITALKF 353 (616)
Q Consensus 274 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~ 353 (616)
+|.|||+............. .--.+.+++.+||.+++++++.||.|.|||+.+. ..+..+.+|...+.||.+
T Consensus 488 tlsiWDLAapTprikaelts----sapaCyALa~spDakvcFsccsdGnI~vwDLhnq----~~VrqfqGhtDGascIdi 559 (705)
T KOG0639|consen 488 TLSIWDLAAPTPRIKAELTS----SAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQ----TLVRQFQGHTDGASCIDI 559 (705)
T ss_pred eeeeeeccCCCcchhhhcCC----cchhhhhhhcCCccceeeeeccCCcEEEEEcccc----eeeecccCCCCCceeEEe
Confidence 99999998654322211111 1115778899999999999999999999999965 788999999999999999
Q ss_pred cCCCCeEEEEecCCcEEEEeCCCCCCcceEecCCCCCCcceeEEECCCCCEEEEeeccccccCCCceEEEEeCCCCceEE
Q 048012 354 SSDGRILLSRSFDGSLKVWDLRKMKEPLKVFEDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREKLELVS 433 (616)
Q Consensus 354 spdg~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~~~~~~ 433 (616)
++||..|.||+.|.+||.||++.+.++. .+.-...|.++.++|.+.+|++|. .++.+.|......+..
T Consensus 560 s~dGtklWTGGlDntvRcWDlregrqlq----qhdF~SQIfSLg~cP~~dWlavGM-------ens~vevlh~skp~ky- 627 (705)
T KOG0639|consen 560 SKDGTKLWTGGLDNTVRCWDLREGRQLQ----QHDFSSQIFSLGYCPTGDWLAVGM-------ENSNVEVLHTSKPEKY- 627 (705)
T ss_pred cCCCceeecCCCccceeehhhhhhhhhh----hhhhhhhheecccCCCccceeeec-------ccCcEEEEecCCccce-
Confidence 9999999999999999999999865433 233345699999999999999999 8888888886655433
Q ss_pred EEecCCCCCeEEEEEcCCCCcEEEEeccCCC--------------CceEEEecccCCCCCcEEEEecCCcceecccc
Q 048012 434 RVGISPACSVVQCAWHPKLNQIFATAGDKSQ--------------GGTHILYDPRLSERGALVCVARAPRKKSVDDF 496 (616)
Q Consensus 434 ~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~~--------------~~~~~v~~~~~s~~g~~l~s~~~d~~~~~wd~ 496 (616)
.+. -|.+.|.++.|.+-|+++++++.|.+. -....|.+..+|-|.+++++|+.|++..|+.+
T Consensus 628 qlh-lheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqskE~SsVlsCDIS~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 628 QLH-LHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISFDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred eec-ccccEEEEEEecccCceeeecCchhhhhhccCccccceeeccccCcceeeeeccCceEEEecCCCcceEEEEE
Confidence 333 367889999999999999999986510 11223344667789999999999988777654
No 126
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.91 E-value=1.1e-22 Score=185.19 Aligned_cols=289 Identities=18% Similarity=0.236 Sum_probs=200.5
Q ss_pred CCCCCceEEEEecCC-CCeEEEEeCCCeEEEEECCCCeeeeE---eeCceeEeecccCCCcccceEEEEEcCCCCCEEEE
Q 048012 193 PSEGHQVRNLSWSPT-SDRFLCVTGSAQAKIYDRDGLTLGEF---VKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILT 268 (616)
Q Consensus 193 ~~~~~~v~~l~~sp~-g~~l~~~s~d~~v~vwd~~~~~~~~~---~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s 268 (616)
..|++.|.++...+. |+++++|+.||.|.|||+....-.+- .-....+.......+|...|..+.|.|.+.-+|.+
T Consensus 40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFts 119 (397)
T KOG4283|consen 40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTS 119 (397)
T ss_pred ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeec
Confidence 357788999999874 88999999999999999875431110 00001111122346899999999999987779999
Q ss_pred EeCCCCEEEEECCCccccceEEeeeccCCCCccEEEEEECCC---CCeEEEEeCCCcEEEEeCCCCCCCCCceeeecCCC
Q 048012 269 SSEDGSLRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWDCD---GKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHS 345 (616)
Q Consensus 269 ~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~---g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~h~ 345 (616)
++.|.+++|||.++.+....+... ..|.+-+|+|- .-+||+|..+-.|++.|+.+| ...+.+.+|.
T Consensus 120 sSFDhtlKVWDtnTlQ~a~~F~me-------~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SG----s~sH~LsGHr 188 (397)
T KOG4283|consen 120 SSFDHTLKVWDTNTLQEAVDFKME-------GKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASG----SFSHTLSGHR 188 (397)
T ss_pred ccccceEEEeecccceeeEEeecC-------ceeehhhcChhhhcceEEEEecCCCcEEEEeccCC----cceeeecccc
Confidence 999999999999986554443322 15777788873 347888999999999999988 6888999999
Q ss_pred CCeEEEEEcCCCC-eEEEEecCCcEEEEeCCCCCCcceEecCC------------CCCCcceeEEECCCCCEEEEeeccc
Q 048012 346 DDITALKFSSDGR-ILLSRSFDGSLKVWDLRKMKEPLKVFEDL------------PNNYAQTNVAFSPDEQLFLTGTSVE 412 (616)
Q Consensus 346 ~~V~~l~~spdg~-~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~------------~~~~~v~~v~fspdg~~l~~gs~~~ 412 (616)
..|.+|.|+|... .|++|+.||.|++||++...-++.++..+ .+.+.+..++|+.++.++++++
T Consensus 189 ~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~g--- 265 (397)
T KOG4283|consen 189 DGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCG--- 265 (397)
T ss_pred CceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhcc---
Confidence 9999999999665 57899999999999999764455554433 2456689999999999999999
Q ss_pred cccCCCceEEEEeCCCCceEEEE--ecCCCCCeEEEEEcCCCCcEEEEeccCCCCceEEEecccCCCCCcEEEEecCCcc
Q 048012 413 RESTTGGLLCFYDREKLELVSRV--GISPACSVVQCAWHPKLNQIFATAGDKSQGGTHILYDPRLSERGALVCVARAPRK 490 (616)
Q Consensus 413 ~~~~~dg~i~iwd~~~~~~~~~~--~~~~~~~v~~~~~~p~~~~l~~~~~d~~~~~~~~v~~~~~s~~g~~l~s~~~d~~ 490 (616)
.|..+++|+..+|+....- ...+. .-...+++ +-+++. .+.+.-+.- ++-.|.+......
T Consensus 266 ----td~r~r~wn~~~G~ntl~~~g~~~~n-~~~~~~~~-----~~~~~s------~vfv~~p~~--~~lall~~~sgs~ 327 (397)
T KOG4283|consen 266 ----TDDRIRVWNMESGRNTLREFGPIIHN-QTTSFAVH-----IQSMDS------DVFVLFPND--GSLALLNLLEGSF 327 (397)
T ss_pred ----CccceEEeecccCccccccccccccc-ccccceEE-----Eeeccc------ceEEEEecC--CeEEEEEccCceE
Confidence 8999999999888643221 11111 11223333 111111 122222221 4555666666667
Q ss_pred eecccccCCc---eeeCCCCCCcccC
Q 048012 491 KSVDDFEVAP---VIHNPHALPLFRD 513 (616)
Q Consensus 491 ~~~wd~~~~~---~~~~p~~~~l~~~ 513 (616)
|+.|+..... ..|.|+-...|..
T Consensus 328 ir~l~~h~k~i~c~~~~~~fq~~~tg 353 (397)
T KOG4283|consen 328 VRRLSTHLKRINCAAYRPDFEQCFTG 353 (397)
T ss_pred EEeeecccceeeEEeecCchhhhhcc
Confidence 7777776332 4455655444444
No 127
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=4.6e-23 Score=206.16 Aligned_cols=246 Identities=15% Similarity=0.242 Sum_probs=195.8
Q ss_pred EEEecC-CCCeEEEEeCCCeEEEEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEEEE
Q 048012 201 NLSWSP-TSDRFLCVTGSAQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWD 279 (616)
Q Consensus 201 ~l~~sp-~g~~l~~~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd 279 (616)
.+..+. .+++|++++.||.|++|++....-. .....+..+..|...|+.+....++ +.|+++|.|-+|++|+
T Consensus 29 ~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~------~s~~~~asme~HsDWVNDiiL~~~~-~tlIS~SsDtTVK~W~ 101 (735)
T KOG0308|consen 29 ALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNE------PSTPYIASMEHHSDWVNDIILCGNG-KTLISASSDTTVKVWN 101 (735)
T ss_pred hccccCCCCceEEecCCCceEEEeccccccCC------cccchhhhhhhhHhHHhhHHhhcCC-CceEEecCCceEEEee
Confidence 444444 4567999999999999998744311 0012366678999999999998877 5899999999999999
Q ss_pred CCCcc--ccceEEeeeccCCCCccEEEEEE-CCCCCeEEEEeCCCcEEEEeCCCCCC------CCCceeeec-CCCCCeE
Q 048012 280 VNEFK--SQKQVIKPKLARPGRVAVTTCAW-DCDGKCIAGGIGDGSIQVWNLKPGWG------SRPDIHVEK-GHSDDIT 349 (616)
Q Consensus 280 ~~~~~--~~~~~~~~~~~~~~~~~v~~~~~-sp~g~~l~~g~~dg~I~iwd~~~~~~------~~~~~~~~~-~h~~~V~ 349 (616)
..... +... .+.|...|.|+++ -++..++|+|+.|+.|.|||++++.. .......+. ++...|+
T Consensus 102 ~~~~~~~c~st------ir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siY 175 (735)
T KOG0308|consen 102 AHKDNTFCMST------IRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIY 175 (735)
T ss_pred cccCcchhHhh------hhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCcccee
Confidence 87653 2222 2456668999999 78889999999999999999997621 011122233 7888999
Q ss_pred EEEEcCCCCeEEEEecCCcEEEEeCCCCCCcceEecCCCCCCcceeEEECCCCCEEEEeeccccccCCCceEEEEeCCCC
Q 048012 350 ALKFSSDGRILLSRSFDGSLKVWDLRKMKEPLKVFEDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREKL 429 (616)
Q Consensus 350 ~l~~spdg~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~~ 429 (616)
+++.++.|..|++|+..+.|++||.++.++.++.. +|..+ |..+..++||..+++++ .||+|++||+...
T Consensus 176 SLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLr-GHTdN--Vr~ll~~dDGt~~ls~s-------SDgtIrlWdLgqQ 245 (735)
T KOG0308|consen 176 SLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLR-GHTDN--VRVLLVNDDGTRLLSAS-------SDGTIRLWDLGQQ 245 (735)
T ss_pred eeecCCcceEEEecCcccceEEeccccccceeeee-ccccc--eEEEEEcCCCCeEeecC-------CCceEEeeecccc
Confidence 99999999999999999999999999877655554 65544 99999999999999999 8999999999999
Q ss_pred ceEEEEecCCCCCeEEEEEcCCCCcEEEEeccCCCCceEEEeccc
Q 048012 430 ELVSRVGISPACSVVQCAWHPKLNQIFATAGDKSQGGTHILYDPR 474 (616)
Q Consensus 430 ~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~~~~~~~v~~~~ 474 (616)
+++.++.. |...|+++..+|....+++|+. ++.+..-++.
T Consensus 246 rCl~T~~v-H~e~VWaL~~~~sf~~vYsG~r----d~~i~~Tdl~ 285 (735)
T KOG0308|consen 246 RCLATYIV-HKEGVWALQSSPSFTHVYSGGR----DGNIYRTDLR 285 (735)
T ss_pred ceeeeEEe-ccCceEEEeeCCCcceEEecCC----CCcEEecccC
Confidence 99999987 5555999999999999999998 4555555544
No 128
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=7.1e-23 Score=197.26 Aligned_cols=273 Identities=19% Similarity=0.234 Sum_probs=211.9
Q ss_pred CCceEEEEecCCCCeEEEEeCCCeEEEEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCE
Q 048012 196 GHQVRNLSWSPTSDRFLCVTGSAQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSL 275 (616)
Q Consensus 196 ~~~v~~l~~sp~g~~l~~~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v 275 (616)
...|++|.|+|....|++++.|+.++||.+++..-. .+..+.--..+|.+++|+|+|...+++++.-..+
T Consensus 213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~----------~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ 282 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNP----------KLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYL 282 (514)
T ss_pred cCCceEEEecCCCceEEEecCCCcEEEEEecCccCh----------hheeeeeccCccceeeecCCCceEEEecccceEE
Confidence 346999999999999999999999999999976532 1233334456899999999997799999999999
Q ss_pred EEEECCCccccceEEeeeccCCCCccEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCCCCCceeeecCCCCCeEEEEEcC
Q 048012 276 RIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWDCDGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHSDDITALKFSS 355 (616)
Q Consensus 276 ~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp 355 (616)
+.||+.+.+..+ +.... ... ...+.....++++++|+..+..|.|.|....++ ..+..++ -.+.|..++|+.
T Consensus 283 ysyDle~ak~~k-~~~~~-g~e-~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~----eli~s~K-ieG~v~~~~fsS 354 (514)
T KOG2055|consen 283 YSYDLETAKVTK-LKPPY-GVE-EKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTK----ELITSFK-IEGVVSDFTFSS 354 (514)
T ss_pred EEeecccccccc-ccCCC-Ccc-cchhheeEecCCCCeEEEcccCceEEeehhhhh----hhhheee-eccEEeeEEEec
Confidence 999998755332 21111 111 225778889999999999999999999998876 4554444 346799999999
Q ss_pred CCCeEEEEecCCcEEEEeCCCCCCcceEecCCCCCCcceeEEECCCCCEEEEeeccccccCCCceEEEEeCCC------C
Q 048012 356 DGRILLSRSFDGSLKVWDLRKMKEPLKVFEDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREK------L 429 (616)
Q Consensus 356 dg~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~------~ 429 (616)
|++.|++++.+|.|.+||++.. .+++.+..... ..-+++|.|+++.|||+|+ ..|.|.|||..+ .
T Consensus 355 dsk~l~~~~~~GeV~v~nl~~~-~~~~rf~D~G~-v~gts~~~S~ng~ylA~GS-------~~GiVNIYd~~s~~~s~~P 425 (514)
T KOG2055|consen 355 DSKELLASGGTGEVYVWNLRQN-SCLHRFVDDGS-VHGTSLCISLNGSYLATGS-------DSGIVNIYDGNSCFASTNP 425 (514)
T ss_pred CCcEEEEEcCCceEEEEecCCc-ceEEEEeecCc-cceeeeeecCCCceEEecc-------CcceEEEeccchhhccCCC
Confidence 9999999999999999999975 55666544322 2357889999999999999 899999999653 2
Q ss_pred ceEEEEecCCCCCeEEEEEcCCCCcEEEEeccC--------------------CCCceEEEecccCCCCCcEEEEecCCc
Q 048012 430 ELVSRVGISPACSVVQCAWHPKLNQIFATAGDK--------------------SQGGTHILYDPRLSERGALVCVARAPR 489 (616)
Q Consensus 430 ~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~--------------------~~~~~~~v~~~~~s~~g~~l~s~~~d~ 489 (616)
+++.++.. -...|+.+.|+++...|+.++... .......+.+++|||.|-+||.|...+
T Consensus 426 kPik~~dN-Ltt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~g 504 (514)
T KOG2055|consen 426 KPIKTVDN-LTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAG 504 (514)
T ss_pred Cchhhhhh-hheeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCCC
Confidence 44444421 235699999999987776666533 235556777899999999999999999
Q ss_pred ceecccc
Q 048012 490 KKSVDDF 496 (616)
Q Consensus 490 ~~~~wd~ 496 (616)
++++|.+
T Consensus 505 rv~l~kL 511 (514)
T KOG2055|consen 505 RVHLFKL 511 (514)
T ss_pred ceeeEee
Confidence 9999976
No 129
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.90 E-value=8.5e-22 Score=198.53 Aligned_cols=309 Identities=17% Similarity=0.271 Sum_probs=228.0
Q ss_pred eEEecCCcccEEEEEECCCCCEEEEEEcCCcEEEEeCCCCccccccceecCCCC--CCceEEEEecCCCCeEEEEeCCCe
Q 048012 142 EIVLKGHTKIVSALAVDHSGSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSE--GHQVRNLSWSPTSDRFLCVTGSAQ 219 (616)
Q Consensus 142 ~~~l~~H~~~V~~v~~sp~g~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~--~~~v~~l~~sp~g~~l~~~s~d~~ 219 (616)
+..+.||.+.|+++.|+|.+..|+++|.|.++.+|.-............+-... ....+...|+|+++.+++-+..|.
T Consensus 260 eall~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg 339 (764)
T KOG1063|consen 260 EALLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGG 339 (764)
T ss_pred hhhhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCc
Confidence 345669999999999999999999999999999998765432222222222222 234889999999999999999999
Q ss_pred EEEEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEEEECCCccccceEEeeeccCCCC
Q 048012 220 AKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPGR 299 (616)
Q Consensus 220 v~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~ 299 (616)
.++|-......+ .......||...|..+.|+|.| .+|++.+.|.+-|||---. ++.. ........-|.
T Consensus 340 ~hlWkt~d~~~w---------~~~~~iSGH~~~V~dv~W~psG-eflLsvs~DQTTRlFa~wg-~q~~-wHEiaRPQiHG 407 (764)
T KOG1063|consen 340 FHLWKTKDKTFW---------TQEPVISGHVDGVKDVDWDPSG-EFLLSVSLDQTTRLFARWG-RQQE-WHEIARPQIHG 407 (764)
T ss_pred EEEEeccCccce---------eeccccccccccceeeeecCCC-CEEEEeccccceeeecccc-cccc-eeeeccccccc
Confidence 999983322222 1244578999999999999987 5999999999999987552 2111 22222223344
Q ss_pred ccEEEEEECCCCCeEEEEeCCCcEEEEeCCCC-----------------------------------C------------
Q 048012 300 VAVTTCAWDCDGKCIAGGIGDGSIQVWNLKPG-----------------------------------W------------ 332 (616)
Q Consensus 300 ~~v~~~~~sp~g~~l~~g~~dg~I~iwd~~~~-----------------------------------~------------ 332 (616)
..++|++|-+....+++|.....+|+|+.... .
T Consensus 408 yDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~ 487 (764)
T KOG1063|consen 408 YDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAV 487 (764)
T ss_pred ccceeeehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccce
Confidence 47899999886677888888888999975321 0
Q ss_pred -------------------------CCCCceeeecCCCCCeEEEEEcCCCCeEEEEecCC-----cEEEEeCCCCCCcce
Q 048012 333 -------------------------GSRPDIHVEKGHSDDITALKFSSDGRILLSRSFDG-----SLKVWDLRKMKEPLK 382 (616)
Q Consensus 333 -------------------------~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg-----~v~lwd~~~~~~~~~ 382 (616)
...+.+..+.+|.-.|++++.+|++++|||++... .|+||+..+... .+
T Consensus 488 ~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~-~~ 566 (764)
T KOG1063|consen 488 CAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQ-VQ 566 (764)
T ss_pred eeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhh-hh
Confidence 01233445668999999999999999999998543 599999887544 33
Q ss_pred EecCCCCCCcceeEEECCCCCEEEEeeccccccCCCceEEEEeCCCCceEE-EE--ecCCCCCeEEEEEcCCCCcEEEEe
Q 048012 383 VFEDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREKLELVS-RV--GISPACSVVQCAWHPKLNQIFATA 459 (616)
Q Consensus 383 ~~~~~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~~~~~~-~~--~~~~~~~v~~~~~~p~~~~l~~~~ 459 (616)
.+.. |...|+.++|||||+||++.+ .|.++.+|......... .+ .-.|..-|++|.|+|+..++++++
T Consensus 567 ~L~~--HsLTVT~l~FSpdg~~LLsvs-------RDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaS 637 (764)
T KOG1063|consen 567 ELEG--HSLTVTRLAFSPDGRYLLSVS-------RDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATAS 637 (764)
T ss_pred eecc--cceEEEEEEECCCCcEEEEee-------cCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEec
Confidence 4444 445699999999999999999 89999999975432211 11 113556689999999999988888
Q ss_pred ccCCCCceEEEecccCC
Q 048012 460 GDKSQGGTHILYDPRLS 476 (616)
Q Consensus 460 ~d~~~~~~~~v~~~~~s 476 (616)
. +..+.||...-.
T Consensus 638 R----DK~VkVW~~~~~ 650 (764)
T KOG1063|consen 638 R----DKKVKVWEEPDL 650 (764)
T ss_pred C----CceEEEEeccCc
Confidence 7 778999986544
No 130
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.90 E-value=1.5e-21 Score=180.11 Aligned_cols=285 Identities=17% Similarity=0.248 Sum_probs=207.2
Q ss_pred EEEEEECCCCCEEEEEEcCCcEEEEeCCCCccc--------cccceecCCCCCCceEEEEec-------CCCCeEEEEeC
Q 048012 152 VSALAVDHSGSRVLSGSYDYTVRMYDFQGMNSR--------LQSFRQLEPSEGHQVRNLSWS-------PTSDRFLCVTG 216 (616)
Q Consensus 152 V~~v~~sp~g~~lasgs~Dg~i~iwd~~~~~~~--------~~~~~~~~~~~~~~v~~l~~s-------p~g~~l~~~s~ 216 (616)
...+.|+|||..|++-+.|..+++|++....-. ......+....+..|+..+|- |+..++++.+.
T Consensus 52 ~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr 131 (406)
T KOG2919|consen 52 LKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSR 131 (406)
T ss_pred hccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeeccc
Confidence 446789999999999999999999998532110 111112222355668888885 56778999999
Q ss_pred CCeEEEEECCCCeeeeEeeCceeEeecccCCCcccc---eEEEEEcCCCCCEEEEEeCCCCEEEEECC-CccccceEEee
Q 048012 217 SAQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICG---LTCGEWHPKTKETILTSSEDGSLRIWDVN-EFKSQKQVIKP 292 (616)
Q Consensus 217 d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~---v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~-~~~~~~~~~~~ 292 (616)
+.-|++||.-++++... .....|... ..+++|+|+|. .|++ +....||+||+. .+.........
T Consensus 132 ~~PIh~wdaftG~lraS----------y~~ydh~de~taAhsL~Fs~DGe-qlfa-GykrcirvFdt~RpGr~c~vy~t~ 199 (406)
T KOG2919|consen 132 DQPIHLWDAFTGKLRAS----------YRAYDHQDEYTAAHSLQFSPDGE-QLFA-GYKRCIRVFDTSRPGRDCPVYTTV 199 (406)
T ss_pred cCceeeeeccccccccc----------hhhhhhHHhhhhheeEEecCCCC-eEee-cccceEEEeeccCCCCCCcchhhh
Confidence 99999999887775322 112334443 46899999985 5554 456889999994 33322222211
Q ss_pred ec-cCCCCccEEEEEECCC-CCeEEEEeCCCcEEEEeCCCCCCCCCceeeecCCCCCeEEEEEcCCCCeEEEEec-CCcE
Q 048012 293 KL-ARPGRVAVTTCAWDCD-GKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHSDDITALKFSSDGRILLSRSF-DGSL 369 (616)
Q Consensus 293 ~~-~~~~~~~v~~~~~sp~-g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~-Dg~v 369 (616)
.. ..+..+.+.|++|+|- .+.+++|+.-..+-||.-... .++..+.+|.+.|+.+.|.++|+.|++|+. |..|
T Consensus 200 ~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~----~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkI 275 (406)
T KOG2919|consen 200 TKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGR----RPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKI 275 (406)
T ss_pred hcccccccceeeeeeccCCCCcceeeecccceeeeEecCCC----CceeeecccCCCeeeEEeccCcCeecccccCCCeE
Confidence 11 2233446889999995 558999999888888876643 677788899999999999999999999984 7789
Q ss_pred EEEeCCCCCCcceEecCCCC-CCcceeEEECCCCCEEEEeeccccccCCCceEEEEeCCC-CceEEEEecCCCCCeEEEE
Q 048012 370 KVWDLRKMKEPLKVFEDLPN-NYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREK-LELVSRVGISPACSVVQCA 447 (616)
Q Consensus 370 ~lwd~~~~~~~~~~~~~~~~-~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~v~~~~ 447 (616)
..||+|..+.++..+..+.. ...-.-+...|++++|++|+ .+|.|++||+++ ++.+..+. .+...|+.++
T Consensus 276 l~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~-------tdG~V~vwdlk~~gn~~sv~~-~~sd~vNgvs 347 (406)
T KOG2919|consen 276 LCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGD-------TDGSVRVWDLKDLGNEVSVTG-NYSDTVNGVS 347 (406)
T ss_pred EEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccC-------CCccEEEEecCCCCCcccccc-ccccccccee
Confidence 99999998887777766543 21122345678999999999 899999999998 66555554 3567799999
Q ss_pred EcCCCCcEEEEec
Q 048012 448 WHPKLNQIFATAG 460 (616)
Q Consensus 448 ~~p~~~~l~~~~~ 460 (616)
+||-...++++++
T Consensus 348 lnP~mpilatssG 360 (406)
T KOG2919|consen 348 LNPIMPILATSSG 360 (406)
T ss_pred cCcccceeeeccC
Confidence 9999766666664
No 131
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=1.2e-22 Score=196.24 Aligned_cols=241 Identities=21% Similarity=0.292 Sum_probs=189.7
Q ss_pred cccEEEEEECCCCCEEEEEEcCCcEEEEeCCCCccccccceecCCCCCCceEEEEecCCCCeEEEEeCCCeEEEEECCCC
Q 048012 149 TKIVSALAVDHSGSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSDRFLCVTGSAQAKIYDRDGL 228 (616)
Q Consensus 149 ~~~V~~v~~sp~g~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~s~d~~v~vwd~~~~ 228 (616)
-+.|.|++-+|.|.+|+.|...|.|++|.+.++. +..+...|-..|+|+.|+-||.+|++++.||.|.+|.+...
T Consensus 81 Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~-----LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~l 155 (476)
T KOG0646|consen 81 PGPVHALASSNLGYFLLAGTISGNLYLWELSSGI-----LLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDL 155 (476)
T ss_pred ccceeeeecCCCceEEEeecccCcEEEEEecccc-----HHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEee
Confidence 4679999999999999999999999999999863 22333456678999999999999999999999999996532
Q ss_pred eeeeEeeCceeEeecccCCCcccceEEEEEcCCC-CCEEEEEeCCCCEEEEECCCccccceEEeeeccCCCCccEEEEEE
Q 048012 229 TLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKT-KETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAW 307 (616)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~-~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 307 (616)
.- . ..+.....+..+..|+-.|+++...+-+ ...|+|+|.|.++++||+..+..+..+..+. .+.+|+.
T Consensus 156 v~-a--~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp~-------si~av~l 225 (476)
T KOG0646|consen 156 VS-A--DNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFPS-------SIKAVAL 225 (476)
T ss_pred cc-c--ccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEecCC-------cceeEEE
Confidence 11 0 0111234567788999999999887642 3589999999999999999886666554432 6899999
Q ss_pred CCCCCeEEEEeCCCcEEEEeCCCCCC------------CCCceeeecCCCC--CeEEEEEcCCCCeEEEEecCCcEEEEe
Q 048012 308 DCDGKCIAGGIGDGSIQVWNLKPGWG------------SRPDIHVEKGHSD--DITALKFSSDGRILLSRSFDGSLKVWD 373 (616)
Q Consensus 308 sp~g~~l~~g~~dg~I~iwd~~~~~~------------~~~~~~~~~~h~~--~V~~l~~spdg~~l~s~s~Dg~v~lwd 373 (616)
+|-++.+++|+.+|.|.+.++..... ....+..+.+|.. .|+|++++-||.+|++|+.||+|+|||
T Consensus 226 Dpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWd 305 (476)
T KOG0646|consen 226 DPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWD 305 (476)
T ss_pred cccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEe
Confidence 99999999999999999988765321 1234556778988 999999999999999999999999999
Q ss_pred CCCCCCcceEecCCCCCCcceeEEECCCCCEEEE
Q 048012 374 LRKMKEPLKVFEDLPNNYAQTNVAFSPDEQLFLT 407 (616)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~ 407 (616)
+.+ +++++++.. ..++|+.+.+.|-.+-++.
T Consensus 306 i~S-~Q~iRtl~~--~kgpVtnL~i~~~~~~~~l 336 (476)
T KOG0646|consen 306 IYS-KQCIRTLQT--SKGPVTNLQINPLERGIIL 336 (476)
T ss_pred cch-HHHHHHHhh--hccccceeEeeccccceec
Confidence 986 455555543 4566999999775444433
No 132
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.90 E-value=7.4e-22 Score=191.98 Aligned_cols=248 Identities=17% Similarity=0.248 Sum_probs=189.3
Q ss_pred cccEEEEEECCCCCEEEEEEcCCcEEEEeCCCCccccccceecCCCCCCceEEEEecCCCCeEEEEeCCCeEEEEECCCC
Q 048012 149 TKIVSALAVDHSGSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSDRFLCVTGSAQAKIYDRDGL 228 (616)
Q Consensus 149 ~~~V~~v~~sp~g~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~s~d~~v~vwd~~~~ 228 (616)
.+.|.||+|.++| -++||..+|.|.||+..+. +..+... .|...|.+++.-.+|..|- |+.|..|..||-+-.
T Consensus 246 kk~Vl~v~F~eng-dviTgDS~G~i~Iw~~~~~----~~~k~~~-aH~ggv~~L~~lr~GtllS-GgKDRki~~Wd~~y~ 318 (626)
T KOG2106|consen 246 KKFVLCVTFLENG-DVITGDSGGNILIWSKGTN----RISKQVH-AHDGGVFSLCMLRDGTLLS-GGKDRKIILWDDNYR 318 (626)
T ss_pred ceEEEEEEEcCCC-CEEeecCCceEEEEeCCCc----eEEeEee-ecCCceEEEEEecCccEee-cCccceEEecccccc
Confidence 4689999999988 4789999999999997542 2233333 6888899999999987655 999999999994322
Q ss_pred eeeeE--------------eeCceeEe--------------ecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEEEEC
Q 048012 229 TLGEF--------------VKGDMYIR--------------DLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDV 280 (616)
Q Consensus 229 ~~~~~--------------~~~~~~~~--------------~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~ 280 (616)
.+.+. .+++.++- ......+|....+.++.+|+. ++++||+.|+.|+||+
T Consensus 319 k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~-~q~~T~gqdk~v~lW~- 396 (626)
T KOG2106|consen 319 KLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSK-NQLLTCGQDKHVRLWN- 396 (626)
T ss_pred ccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCCh-hheeeccCcceEEEcc-
Confidence 22111 01111111 111236888899999999976 6999999999999999
Q ss_pred CCccccceEEeeeccCCCCccEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCCCCCceeeecCCCCCeEEEEEcCCCCeE
Q 048012 281 NEFKSQKQVIKPKLARPGRVAVTTCAWDCDGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHSDDITALKFSSDGRIL 360 (616)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l 360 (616)
..+.....+ ... ++.|+.|+|.| .+|.|+..|...+.|..+. ..+..... ..++++++|+|+|.+|
T Consensus 397 -~~k~~wt~~--~~d-----~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~----~lv~~~~d-~~~ls~v~ysp~G~~l 462 (626)
T KOG2106|consen 397 -DHKLEWTKI--IED-----PAECADFHPSG-VVAVGTATGRWFVLDTETQ----DLVTIHTD-NEQLSVVRYSPDGAFL 462 (626)
T ss_pred -CCceeEEEE--ecC-----ceeEeeccCcc-eEEEeeccceEEEEecccc----eeEEEEec-CCceEEEEEcCCCCEE
Confidence 222222211 111 68899999999 9999999999999999863 34444444 7899999999999999
Q ss_pred EEEecCCcEEEEeCCCCCCcceEecCCCCCCcceeEEECCCCCEEEEeeccccccCCCceEEEEeCC
Q 048012 361 LSRSFDGSLKVWDLRKMKEPLKVFEDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDRE 427 (616)
Q Consensus 361 ~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~ 427 (616)
|.|+.|+.|+||-+...+..+.....+.. .+|+.+.||+|+++|.+-+ .|-.|.+|...
T Consensus 463 Avgs~d~~iyiy~Vs~~g~~y~r~~k~~g-s~ithLDwS~Ds~~~~~~S-------~d~eiLyW~~~ 521 (626)
T KOG2106|consen 463 AVGSHDNHIYIYRVSANGRKYSRVGKCSG-SPITHLDWSSDSQFLVSNS-------GDYEILYWKPS 521 (626)
T ss_pred EEecCCCeEEEEEECCCCcEEEEeeeecC-ceeEEeeecCCCceEEecc-------CceEEEEEccc
Confidence 99999999999999887776666655444 7899999999999999998 88899999533
No 133
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.90 E-value=1.4e-20 Score=183.07 Aligned_cols=314 Identities=17% Similarity=0.192 Sum_probs=231.0
Q ss_pred CcceEEecCCcccEEEEEECCC--CCEEEEE--EcCCcEEEEeCCCCccccccceecCCCCCCceEEEEecCCCCeEEEE
Q 048012 139 MSNEIVLKGHTKIVSALAVDHS--GSRVLSG--SYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSDRFLCV 214 (616)
Q Consensus 139 ~~~~~~l~~H~~~V~~v~~sp~--g~~lasg--s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~ 214 (616)
++...++......|+|++|++. |.+|+.- +.+..+.|||.+.... ....+ .....|....|+|.+..|++.
T Consensus 144 L~TL~V~g~f~~GV~~vaFsk~~~G~~l~~vD~s~~h~lSVWdWqk~~~-~~~vk----~sne~v~~a~FHPtd~nliit 218 (626)
T KOG2106|consen 144 LSTLHVIGFFDRGVTCVAFSKINGGSLLCAVDDSNPHMLSVWDWQKKAK-LGPVK----TSNEVVFLATFHPTDPNLIIT 218 (626)
T ss_pred ceeeeeeccccccceeeeecccCCCceEEEecCCCccccchhhchhhhc-cCcce----eccceEEEEEeccCCCcEEEE
Confidence 3444556677889999999973 4555543 3456789999876421 11111 123348899999999999999
Q ss_pred eCCCeEEEEECCCCeeeeEeeCceeEeecccCCC-cccceEEEEEcCCCCCEEEEEeCCCCEEEEECCCccccceEEeee
Q 048012 215 TGSAQAKIYDRDGLTLGEFVKGDMYIRDLKNTKG-HICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKPK 293 (616)
Q Consensus 215 s~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~ 293 (616)
.+.+.+..|++.+..+.+.. ..+.+ ....|.|++|.+++ -++||..+|.|.||+..+.+..++..
T Consensus 219 ~Gk~H~~Fw~~~~~~l~k~~---------~~fek~ekk~Vl~v~F~eng--dviTgDS~G~i~Iw~~~~~~~~k~~~--- 284 (626)
T KOG2106|consen 219 CGKGHLYFWTLRGGSLVKRQ---------GIFEKREKKFVLCVTFLENG--DVITGDSGGNILIWSKGTNRISKQVH--- 284 (626)
T ss_pred eCCceEEEEEccCCceEEEe---------eccccccceEEEEEEEcCCC--CEEeecCCceEEEEeCCCceEEeEee---
Confidence 99999999999987764331 11222 22679999999987 48999999999999986644333332
Q ss_pred ccCCCCccEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCC------------------------------------CCCc
Q 048012 294 LARPGRVAVTTCAWDCDGKCIAGGIGDGSIQVWNLKPGWG------------------------------------SRPD 337 (616)
Q Consensus 294 ~~~~~~~~v~~~~~sp~g~~l~~g~~dg~I~iwd~~~~~~------------------------------------~~~~ 337 (616)
.|...|.+++.-.+|.+|- |+.|..|.+||-.-... ....
T Consensus 285 ---aH~ggv~~L~~lr~GtllS-GgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f 360 (626)
T KOG2106|consen 285 ---AHDGGVFSLCMLRDGTLLS-GGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGF 360 (626)
T ss_pred ---ecCCceEEEEEecCccEee-cCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCc
Confidence 5666899999999998766 99999999998321100 0111
Q ss_pred eeeecCCCCCeEEEEEcCCCCeEEEEecCCcEEEEeCCCCCCcceEecCCCCCCcceeEEECCCCCEEEEeeccccccCC
Q 048012 338 IHVEKGHSDDITALKFSSDGRILLSRSFDGSLKVWDLRKMKEPLKVFEDLPNNYAQTNVAFSPDEQLFLTGTSVERESTT 417 (616)
Q Consensus 338 ~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~ 417 (616)
.....+|....+.++.+|+.++|++++.|+.++||+ . .+.....+ -..++.++.|+|.| .|+.|+ .
T Consensus 361 ~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~-~-~k~~wt~~----~~d~~~~~~fhpsg-~va~Gt-------~ 426 (626)
T KOG2106|consen 361 TLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN-D-HKLEWTKI----IEDPAECADFHPSG-VVAVGT-------A 426 (626)
T ss_pred eEEEEecccceeeEEcCCChhheeeccCcceEEEcc-C-CceeEEEE----ecCceeEeeccCcc-eEEEee-------c
Confidence 123346888889999999999999999999999999 2 22211111 22458899999999 999999 8
Q ss_pred CceEEEEeCCCCceEEEEecCCCCCeEEEEEcCCCCcEEEEeccCCCCceEEEe---------------------cccCC
Q 048012 418 GGLLCFYDREKLELVSRVGISPACSVVQCAWHPKLNQIFATAGDKSQGGTHILY---------------------DPRLS 476 (616)
Q Consensus 418 dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~~~~~~~v~---------------------~~~~s 476 (616)
.|...+.|.++..++..- .. +.++++++|+|+|..|++++.| +.+.|| .+.||
T Consensus 427 ~G~w~V~d~e~~~lv~~~-~d-~~~ls~v~ysp~G~~lAvgs~d----~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS 500 (626)
T KOG2106|consen 427 TGRWFVLDTETQDLVTIH-TD-NEQLSVVRYSPDGAFLAVGSHD----NHIYIYRVSANGRKYSRVGKCSGSPITHLDWS 500 (626)
T ss_pred cceEEEEecccceeEEEE-ec-CCceEEEEEcCCCCEEEEecCC----CeEEEEEECCCCcEEEEeeeecCceeEEeeec
Confidence 999999999996665544 33 7889999999999999999985 444444 36788
Q ss_pred CCCcEEEEecCCcceeccc
Q 048012 477 ERGALVCVARAPRKKSVDD 495 (616)
Q Consensus 477 ~~g~~l~s~~~d~~~~~wd 495 (616)
+|+++|.+.+-|-.+-+|.
T Consensus 501 ~Ds~~~~~~S~d~eiLyW~ 519 (626)
T KOG2106|consen 501 SDSQFLVSNSGDYEILYWK 519 (626)
T ss_pred CCCceEEeccCceEEEEEc
Confidence 8888888888888888883
No 134
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.90 E-value=8e-24 Score=213.91 Aligned_cols=258 Identities=19% Similarity=0.320 Sum_probs=212.6
Q ss_pred CCCCEEEEEEcCCcEEEEeCCCCccccccceecCCCCCCceEEEEecCCCCeEEEEeCCCeEEEEECCCCeeeeEeeCce
Q 048012 159 HSGSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSDRFLCVTGSAQAKIYDRDGLTLGEFVKGDM 238 (616)
Q Consensus 159 p~g~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~s~d~~v~vwd~~~~~~~~~~~~~~ 238 (616)
|-+.+++.+..+..++||++... ..|...|.++..-..++.+++|+.+..+.+|.+....
T Consensus 2 ~~~~~~m~~~~~t~Lr~~~~~~~-----------~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~--------- 61 (825)
T KOG0267|consen 2 PGMEFLMKTKRATKLRVWDTREF-----------VAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPN--------- 61 (825)
T ss_pred Ccccccceeeeeeccccccchhh-----------hhhhhhhceeeeeccceeeccCCCceeeccccccCCc---------
Confidence 34456667777788999987642 1344557777776677888889999999999876432
Q ss_pred eEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEEEECCCccccceEEeeeccCCCCccEEEEEECCCCCeEEEEe
Q 048012 239 YIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWDCDGKCIAGGI 318 (616)
Q Consensus 239 ~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~g~ 318 (616)
.+..+.+|...|.++.|++.. .+|++|+.+|+|++||+...+....+ .+|...+.++.|+|-+.+++.|+
T Consensus 62 ---~i~S~~~hespIeSl~f~~~E-~LlaagsasgtiK~wDleeAk~vrtL------tgh~~~~~sv~f~P~~~~~a~gS 131 (825)
T KOG0267|consen 62 ---AITSLTGHESPIESLTFDTSE-RLLAAGSASGTIKVWDLEEAKIVRTL------TGHLLNITSVDFHPYGEFFASGS 131 (825)
T ss_pred ---hhheeeccCCcceeeecCcch-hhhcccccCCceeeeehhhhhhhhhh------hccccCcceeeeccceEEecccc
Confidence 233478999999999999976 59999999999999999987665544 35566889999999999999999
Q ss_pred CCCcEEEEeCCCCCCCCCceeeecCCCCCeEEEEEcCCCCeEEEEecCCcEEEEeCCCCCCcceEecCCCCCCcceeEEE
Q 048012 319 GDGSIQVWNLKPGWGSRPDIHVEKGHSDDITALKFSSDGRILLSRSFDGSLKVWDLRKMKEPLKVFEDLPNNYAQTNVAF 398 (616)
Q Consensus 319 ~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~v~~v~f 398 (616)
.|+.+.+||++.. -+...+.+|...|.++.|+|+|+++++++.|.+++|||+..+ .....|..+. ..+..+.|
T Consensus 132 tdtd~~iwD~Rk~----Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~ag-k~~~ef~~~e--~~v~sle~ 204 (825)
T KOG0267|consen 132 TDTDLKIWDIRKK----GCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAG-KLSKEFKSHE--GKVQSLEF 204 (825)
T ss_pred ccccceehhhhcc----CceeeecCCcceeEEEeecCCCceeeccCCcceeeeeccccc-cccccccccc--cccccccc
Confidence 9999999999943 478888999999999999999999999999999999999864 4455665544 44888999
Q ss_pred CCCCCEEEEeeccccccCCCceEEEEeCCCCceEEEEecCCCCCeEEEEEcCCCCcEEEEecc
Q 048012 399 SPDEQLFLTGTSVERESTTGGLLCFYDREKLELVSRVGISPACSVVQCAWHPKLNQIFATAGD 461 (616)
Q Consensus 399 spdg~~l~~gs~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d 461 (616)
+|..-+++.|+ .|+.|+|||+++.+.+...... ...|.+++|+|++..+++|...
T Consensus 205 hp~e~Lla~Gs-------~d~tv~f~dletfe~I~s~~~~-~~~v~~~~fn~~~~~~~~G~q~ 259 (825)
T KOG0267|consen 205 HPLEVLLAPGS-------SDRTVRFWDLETFEVISSGKPE-TDGVRSLAFNPDGKIVLSGEQI 259 (825)
T ss_pred CchhhhhccCC-------CCceeeeeccceeEEeeccCCc-cCCceeeeecCCceeeecCchh
Confidence 99999999999 8999999999999998887643 5679999999999988888764
No 135
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.90 E-value=1.2e-21 Score=180.41 Aligned_cols=258 Identities=16% Similarity=0.204 Sum_probs=196.0
Q ss_pred eEEEEeCCCeEEEEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEEEECCCccccceE
Q 048012 210 RFLCVTGSAQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQV 289 (616)
Q Consensus 210 ~l~~~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~~~ 289 (616)
.|++|++...|.-+++.-..-..-......+..+..+..|...|++++.+- .++++|+.|-+|+|||+........+
T Consensus 3 ~iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAVs~---~~~aSGssDetI~IYDm~k~~qlg~l 79 (362)
T KOG0294|consen 3 EIIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAVSG---PYVASGSSDETIHIYDMRKRKQLGIL 79 (362)
T ss_pred eEEEeeeeeEEEEEEeccCccccccccceeeeccccccccccceeEEEecc---eeEeccCCCCcEEEEeccchhhhcce
Confidence 356677777766666553221111111223345666789999999999963 69999999999999999987666555
Q ss_pred EeeeccCCCCccEEEEEECCCCC--eEEEEeCCCcEEEEeCCCCCCCCCceeeecCCCCCeEEEEEcCCCCeEEEEecCC
Q 048012 290 IKPKLARPGRVAVTTCAWDCDGK--CIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHSDDITALKFSSDGRILLSRSFDG 367 (616)
Q Consensus 290 ~~~~~~~~~~~~v~~~~~sp~g~--~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg 367 (616)
.. |.+.|+++.|.+.-. .|++|+.||.|.+|+... ...+..+++|.+.|+.|+.+|.+++-++.+.|+
T Consensus 80 l~------HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~----W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~ 149 (362)
T KOG0294|consen 80 LS------HAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGS----WELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQ 149 (362)
T ss_pred ec------cccceEEEEecCCcchhheeeecCCCcEEEEEcCC----eEEeeeecccccccceeEecCCCceEEEEcCCc
Confidence 43 344899999998765 899999999999999874 478899999999999999999999999999999
Q ss_pred cEEEEeCCCCCCcceEecCCCCCCcceeEEECCCCCEEEEeeccccccCCCceEEEEeCCCCceEEEEecCCCCCeEEEE
Q 048012 368 SLKVWDLRKMKEPLKVFEDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREKLELVSRVGISPACSVVQCA 447 (616)
Q Consensus 368 ~v~lwd~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~ 447 (616)
.+++||+-+++..... .+.+. .+.|.|+|.|.+++.+. ...|-||.+.+..++..+..+ ..+.++.
T Consensus 150 ~lr~WNLV~Gr~a~v~--~L~~~--at~v~w~~~Gd~F~v~~--------~~~i~i~q~d~A~v~~~i~~~--~r~l~~~ 215 (362)
T KOG0294|consen 150 VLRTWNLVRGRVAFVL--NLKNK--ATLVSWSPQGDHFVVSG--------RNKIDIYQLDNASVFREIENP--KRILCAT 215 (362)
T ss_pred eeeeehhhcCccceee--ccCCc--ceeeEEcCCCCEEEEEe--------ccEEEEEecccHhHhhhhhcc--ccceeee
Confidence 9999999876643222 22222 45599999999888886 467889999998888777543 4577777
Q ss_pred EcCCCCcEEEEeccCCCCceEEEeccc---------------------CCCCCcEEEEecCCcceecccccCC
Q 048012 448 WHPKLNQIFATAGDKSQGGTHILYDPR---------------------LSERGALVCVARAPRKKSVDDFEVA 499 (616)
Q Consensus 448 ~~p~~~~l~~~~~d~~~~~~~~v~~~~---------------------~s~~g~~l~s~~~d~~~~~wd~~~~ 499 (616)
|-.. ..|++|.. +..+.+||-. ..|++.+|+++++||.|++||+...
T Consensus 216 ~l~~-~~L~vG~d----~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 216 FLDG-SELLVGGD----NEWISLKDTDSDTPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred ecCC-ceEEEecC----CceEEEeccCCCccceeeecchhheeeeEEEecCCceEEEEeccCceEEEEEcccc
Confidence 7654 67777776 4455555522 2467899999999999999999654
No 136
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.90 E-value=1.1e-23 Score=212.81 Aligned_cols=241 Identities=21% Similarity=0.404 Sum_probs=202.8
Q ss_pred CCcceEEecCCcccEEEEEECCCCCEEEEEEcCCcEEEEeCCCCccccccceecCCCCCCceEEEEecCCCCeEEEEeCC
Q 048012 138 PMSNEIVLKGHTKIVSALAVDHSGSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSDRFLCVTGS 217 (616)
Q Consensus 138 p~~~~~~l~~H~~~V~~v~~sp~g~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~s~d 217 (616)
++.....+..|...|.|+..-..++.+++|+.|..+-+|.+....... ...+|..+|.+|.|++...+|++|+.+
T Consensus 17 r~~~~~~~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~-----S~~~hespIeSl~f~~~E~Llaagsas 91 (825)
T KOG0267|consen 17 RVWDTREFVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAIT-----SLTGHESPIESLTFDTSERLLAAGSAS 91 (825)
T ss_pred ccccchhhhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhh-----eeeccCCcceeeecCcchhhhcccccC
Confidence 333334556799999999998888999999999999999987543222 145788899999999999999999999
Q ss_pred CeEEEEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEEEECCCccccceEEeeeccCC
Q 048012 218 AQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARP 297 (616)
Q Consensus 218 ~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~ 297 (616)
|+|++||+..... ++++.+|...+..+.|+|.+ .++++|+.|+.+++||++...+...+ .+
T Consensus 92 gtiK~wDleeAk~------------vrtLtgh~~~~~sv~f~P~~-~~~a~gStdtd~~iwD~Rk~Gc~~~~------~s 152 (825)
T KOG0267|consen 92 GTIKVWDLEEAKI------------VRTLTGHLLNITSVDFHPYG-EFFASGSTDTDLKIWDIRKKGCSHTY------KS 152 (825)
T ss_pred Cceeeeehhhhhh------------hhhhhccccCcceeeeccce-EEeccccccccceehhhhccCceeee------cC
Confidence 9999999986543 66789999999999999988 58899999999999999866665544 23
Q ss_pred CCccEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCCCCCceeeecCCCCCeEEEEEcCCCCeEEEEecCCcEEEEeCCCC
Q 048012 298 GRVAVTTCAWDCDGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHSDDITALKFSSDGRILLSRSFDGSLKVWDLRKM 377 (616)
Q Consensus 298 ~~~~v~~~~~sp~g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~v~lwd~~~~ 377 (616)
|...|.++.|+|+|++++.|+.|.+++|||+..+ .....+..|.+.|.++.|+|..-+|++|+.|++|++||+++.
T Consensus 153 ~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~ag----k~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletf 228 (825)
T KOG0267|consen 153 HTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAG----KLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETF 228 (825)
T ss_pred CcceeEEEeecCCCceeeccCCcceeeeeccccc----ccccccccccccccccccCchhhhhccCCCCceeeeecccee
Confidence 5557899999999999999999999999999876 788889999999999999999999999999999999999974
Q ss_pred CCcceEecCCCCCCcceeEEECCCCCEEEEee
Q 048012 378 KEPLKVFEDLPNNYAQTNVAFSPDEQLFLTGT 409 (616)
Q Consensus 378 ~~~~~~~~~~~~~~~v~~v~fspdg~~l~~gs 409 (616)
.. +. ...+....|.+++|+|++..+++|.
T Consensus 229 e~-I~--s~~~~~~~v~~~~fn~~~~~~~~G~ 257 (825)
T KOG0267|consen 229 EV-IS--SGKPETDGVRSLAFNPDGKIVLSGE 257 (825)
T ss_pred EE-ee--ccCCccCCceeeeecCCceeeecCc
Confidence 32 11 1223345699999999999999987
No 137
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.90 E-value=4e-22 Score=193.27 Aligned_cols=267 Identities=18% Similarity=0.227 Sum_probs=202.4
Q ss_pred cEEEEEECCCCC-EEEEEEcCCcEEEEeCCCCccccccceecCCCCCCceEEEEecCCCCeEEEEeCCCeEEEEECCCCe
Q 048012 151 IVSALAVDHSGS-RVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSDRFLCVTGSAQAKIYDRDGLT 229 (616)
Q Consensus 151 ~V~~v~~sp~g~-~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~s~d~~v~vwd~~~~~ 229 (616)
.|.++.|+.... .+++.+.|..|++|.-.+.... +.......+..-.|++......++++|+..+.|+|||+....
T Consensus 36 g~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~---Vp~~~k~~gd~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl 112 (673)
T KOG4378|consen 36 GDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPE---VPRVRKLTGDNAFCVACASQSLYEISGGQSGCVKIWDLRAKL 112 (673)
T ss_pred cceeeeccccceEEEeecCCceeEEEecccCCCCc---cceeeccccchHHHHhhhhcceeeeccCcCceeeehhhHHHH
Confidence 388999987663 2334456788999976553222 222222233344455554555899999999999999998554
Q ss_pred eeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEEEECCCccccceEEeeeccCCCCccEEEEEECC
Q 048012 230 LGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWDC 309 (616)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp 309 (616)
+ .+.+++|...|+++.++..+ .+|++++..|.|.|..+.++.....+..... ..|.-+.|++
T Consensus 113 ~------------hr~lkdh~stvt~v~YN~~D-eyiAsvs~gGdiiih~~~t~~~tt~f~~~sg-----qsvRll~ys~ 174 (673)
T KOG4378|consen 113 I------------HRFLKDHQSTVTYVDYNNTD-EYIASVSDGGDIIIHGTKTKQKTTTFTIDSG-----QSVRLLRYSP 174 (673)
T ss_pred H------------hhhccCCcceeEEEEecCCc-ceeEEeccCCcEEEEecccCccccceecCCC-----CeEEEeeccc
Confidence 3 55589999999999999876 6999999999999999988665554432211 1567889999
Q ss_pred CCC-eEEEEeCCCcEEEEeCCCCCCCCCceeeecCCCCCeEEEEEcC-CCCeEEEEecCCcEEEEeCCCCCCcceEecCC
Q 048012 310 DGK-CIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHSDDITALKFSS-DGRILLSRSFDGSLKVWDLRKMKEPLKVFEDL 387 (616)
Q Consensus 310 ~g~-~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp-dg~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~ 387 (616)
..+ +|.+++.+|.|.+||+.. ..+.......|..+...|+|+| +..+|++.+.|..|.+||++.... ...+
T Consensus 175 skr~lL~~asd~G~VtlwDv~g---~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s-~~~l--- 247 (673)
T KOG4378|consen 175 SKRFLLSIASDKGAVTLWDVQG---MSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQAS-TDRL--- 247 (673)
T ss_pred ccceeeEeeccCCeEEEEeccC---CCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccc-ccee---
Confidence 776 466788999999999986 4467778889999999999999 566889999999999999986332 2222
Q ss_pred CCCCcceeEEECCCCCEEEEeeccccccCCCceEEEEeCCCCceEEEEecCCCCCeEEEEEcCCC
Q 048012 388 PNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREKLELVSRVGISPACSVVQCAWHPKL 452 (616)
Q Consensus 388 ~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~ 452 (616)
....+.+.++|+++|.+|++|+ ..|.|+.||++..+....+...|...|++++|-+.-
T Consensus 248 ~y~~Plstvaf~~~G~~L~aG~-------s~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 248 TYSHPLSTVAFSECGTYLCAGN-------SKGELIAYDMRSTKAPVAVRSAHDASVTRVAFQPSP 305 (673)
T ss_pred eecCCcceeeecCCceEEEeec-------CCceEEEEecccCCCCceEeeecccceeEEEeeecc
Confidence 2334588999999999999999 899999999987765555544577889999998873
No 138
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.90 E-value=5.9e-22 Score=197.13 Aligned_cols=190 Identities=22% Similarity=0.276 Sum_probs=143.3
Q ss_pred cEEEEEECC-CCCeEEEEeCCCcEEEEeCCCCCC---CCCceeeecCCCCCeEEEEEcC-CCCeEEEEecCCcEEEEeCC
Q 048012 301 AVTTCAWDC-DGKCIAGGIGDGSIQVWNLKPGWG---SRPDIHVEKGHSDDITALKFSS-DGRILLSRSFDGSLKVWDLR 375 (616)
Q Consensus 301 ~v~~~~~sp-~g~~l~~g~~dg~I~iwd~~~~~~---~~~~~~~~~~h~~~V~~l~~sp-dg~~l~s~s~Dg~v~lwd~~ 375 (616)
.|+.+.|+| |...||+++.||.|+||.+..+.. .......+.+|...|++|.|+| -.++|+++++|-+|+|||++
T Consensus 629 ~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~ 708 (1012)
T KOG1445|consen 629 LVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLA 708 (1012)
T ss_pred eeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehh
Confidence 467778887 667899999999999999876521 2234567889999999999999 55799999999999999999
Q ss_pred CCCCcceEecCCCCCCcceeEEECCCCCEEEEeeccccccCCCceEEEEeCCCCce-EEEEecCCCCCeEEEEEcCCCCc
Q 048012 376 KMKEPLKVFEDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREKLEL-VSRVGISPACSVVQCAWHPKLNQ 454 (616)
Q Consensus 376 ~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~~v~~~~~~p~~~~ 454 (616)
+..... .+.+| ...|..++|||+|+.+++.+ .||+|++|+.++++. ++.-....+..--.+.|--++.+
T Consensus 709 ~~~~~~-~l~gH--tdqIf~~AWSpdGr~~AtVc-------KDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~ 778 (1012)
T KOG1445|consen 709 NAKLYS-RLVGH--TDQIFGIAWSPDGRRIATVC-------KDGTLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRI 778 (1012)
T ss_pred hhhhhh-eeccC--cCceeEEEECCCCcceeeee-------cCceEEEeCCCCCCCccccCCCCccCcceeEEEEecCcE
Confidence 865433 34444 45599999999999999999 999999999887754 44333333455677899999999
Q ss_pred EEEEeccCCCCceEEEec---------------ccCC-------C-CCcEEEEecCCcceecccccCCc
Q 048012 455 IFATAGDKSQGGTHILYD---------------PRLS-------E-RGALVCVARAPRKKSVDDFEVAP 500 (616)
Q Consensus 455 l~~~~~d~~~~~~~~v~~---------------~~~s-------~-~g~~l~s~~~d~~~~~wd~~~~~ 500 (616)
|++.+-|+.....+.+|+ ++-| + .+.++++|..|+.|..+++-...
T Consensus 779 viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~lDvaps~LvP~YD~Ds~~lfltGKGD~~v~~yEv~~es 847 (1012)
T KOG1445|consen 779 VIVVGFDKSSERQVQMYDAQTLDLRPLYTQVLDVAPSPLVPHYDYDSNVLFLTGKGDRFVNMYEVIYES 847 (1012)
T ss_pred EEEecccccchhhhhhhhhhhccCCcceeeeecccCccccccccCCCceEEEecCCCceEEEEEecCCC
Confidence 999988873333333333 2222 2 35677889999999888874443
No 139
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.90 E-value=2.6e-21 Score=177.16 Aligned_cols=242 Identities=17% Similarity=0.288 Sum_probs=182.7
Q ss_pred CCCCCceEEEEecCCCC-eEEEEeCCCeEEEEECCCC-eeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEe
Q 048012 193 PSEGHQVRNLSWSPTSD-RFLCVTGSAQAKIYDRDGL-TLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSS 270 (616)
Q Consensus 193 ~~~~~~v~~l~~sp~g~-~l~~~s~d~~v~vwd~~~~-~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s 270 (616)
......|.+|+|||... +|++++.|++||+|++... .+ .-+....|.++|.+++|+.++ ..+++|+
T Consensus 24 ~pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~-----------~~ka~~~~~~PvL~v~Wsddg-skVf~g~ 91 (347)
T KOG0647|consen 24 NPPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQL-----------VPKAQQSHDGPVLDVCWSDDG-SKVFSGG 91 (347)
T ss_pred CCcccchheeEeccccCceEEecccCCceEEEEEecCCcc-----------cchhhhccCCCeEEEEEccCC-ceEEeec
Confidence 34556799999999544 4558889999999998753 21 123457899999999999988 6899999
Q ss_pred CCCCEEEEECCCccccceEEeeeccCCCCccEEEEEECCCCC--eEEEEeCCCcEEEEeCCCCCCCCCceeeecCCCCCe
Q 048012 271 EDGSLRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWDCDGK--CIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHSDDI 348 (616)
Q Consensus 271 ~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~--~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V 348 (616)
.|+.+++||+.+++.. ++ ..|..+|.+|.|-+... +|++|+.|.+|+.||++.. ..+..+. -...|
T Consensus 92 ~Dk~~k~wDL~S~Q~~-~v------~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~----~pv~t~~-LPeRv 159 (347)
T KOG0647|consen 92 CDKQAKLWDLASGQVS-QV------AAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSS----NPVATLQ-LPERV 159 (347)
T ss_pred cCCceEEEEccCCCee-ee------eecccceeEEEEecCCCcceeEecccccceeecccCCC----Ceeeeee-cccee
Confidence 9999999999987332 22 24556899999988766 8999999999999999964 3444443 23457
Q ss_pred EEEEEcCCCCeEEEEecCCcEEEEeCCCCCCcceEecCCCCCCcceeEEECCCCCEEEEeeccccccCCCceEEEEeCCC
Q 048012 349 TALKFSSDGRILLSRSFDGSLKVWDLRKMKEPLKVFEDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREK 428 (616)
Q Consensus 349 ~~l~~spdg~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~ 428 (616)
+++..- ..+++.+..+..|.+|+|++.....+.+. .+....++||+...|....+.|+ ..|.+.|..+..
T Consensus 160 Ya~Dv~--~pm~vVata~r~i~vynL~n~~te~k~~~-SpLk~Q~R~va~f~d~~~~alGs-------iEGrv~iq~id~ 229 (347)
T KOG0647|consen 160 YAADVL--YPMAVVATAERHIAVYNLENPPTEFKRIE-SPLKWQTRCVACFQDKDGFALGS-------IEGRVAIQYIDD 229 (347)
T ss_pred eehhcc--CceeEEEecCCcEEEEEcCCCcchhhhhc-CcccceeeEEEEEecCCceEeee-------ecceEEEEecCC
Confidence 776654 45788888999999999987654444433 23556799999999988889998 899999999887
Q ss_pred Cce--EEEEecCC--------CCCeEEEEEcCCCCcEEEEeccCCCCceEEEec
Q 048012 429 LEL--VSRVGISP--------ACSVVQCAWHPKLNQIFATAGDKSQGGTHILYD 472 (616)
Q Consensus 429 ~~~--~~~~~~~~--------~~~v~~~~~~p~~~~l~~~~~d~~~~~~~~v~~ 472 (616)
+.. -.++..+. -..|++++|||.-+.|++.++ +++..+||
T Consensus 230 ~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGs----DGtf~FWD 279 (347)
T KOG0647|consen 230 PNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGS----DGTFSFWD 279 (347)
T ss_pred CCccCceeEEEeccCCCCCCceEEecceEeecccceEEEecC----CceEEEec
Confidence 622 22232211 135788899998888888888 67888888
No 140
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.89 E-value=5.6e-22 Score=190.99 Aligned_cols=253 Identities=18% Similarity=0.281 Sum_probs=191.2
Q ss_pred CCCceEEEEecCCCC--eEEEEeCCCeEEEEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCC
Q 048012 195 EGHQVRNLSWSPTSD--RFLCVTGSAQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSED 272 (616)
Q Consensus 195 ~~~~v~~l~~sp~g~--~l~~~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~D 272 (616)
+...|.+++|+|... .+++|...|+|-+||+.+.+... ..+..+..|...|.++.|+|.+...+++.|.|
T Consensus 185 ~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~--------d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyD 256 (498)
T KOG4328|consen 185 TDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDK--------DGVYLFTPHSGPVSGLKFSPANTSQIYSSSYD 256 (498)
T ss_pred cccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCcc--------CceEEeccCCccccceEecCCChhheeeeccC
Confidence 456799999999865 56677778999999996332100 11333578999999999999988899999999
Q ss_pred CCEEEEECCCccccceEEeeeccCCCCccEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCCCCCceeeecCCCCCeEEEE
Q 048012 273 GSLRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWDCDGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHSDDITALK 352 (616)
Q Consensus 273 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~ 352 (616)
|+||+-|++.......+.. ......+..+.|+.+...++.|..=|...+||++++. .....+.-|...|.+|+
T Consensus 257 GtiR~~D~~~~i~e~v~s~----~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~---s~~~~~~lh~kKI~sv~ 329 (498)
T KOG4328|consen 257 GTIRLQDFEGNISEEVLSL----DTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDG---SEYENLRLHKKKITSVA 329 (498)
T ss_pred ceeeeeeecchhhHHHhhc----CccceeeeeccccCCCccEEEeecccceEEEEeecCC---ccchhhhhhhcccceee
Confidence 9999999986432221111 1233367888898888888888888899999999863 45666778888999999
Q ss_pred EcCC-CCeEEEEecCCcEEEEeCCCCCCcce-EecCCCCCCcceeEEECCCCCEEEEeeccccccCCCceEEEEeC----
Q 048012 353 FSSD-GRILLSRSFDGSLKVWDLRKMKEPLK-VFEDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDR---- 426 (616)
Q Consensus 353 ~spd-g~~l~s~s~Dg~v~lwd~~~~~~~~~-~~~~~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~---- 426 (616)
++|. ..+|||+|.|++++|||+|....... .+....|...|.++.|||.+-.|+|.+ .|..|+|||.
T Consensus 330 ~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~-------~D~~IRv~dss~~s 402 (498)
T KOG4328|consen 330 LNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTC-------QDNEIRVFDSSCIS 402 (498)
T ss_pred cCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeec-------cCCceEEeeccccc
Confidence 9994 56899999999999999997543222 455667778899999999988888888 8999999998
Q ss_pred CCCceEEEEecCCCC----CeEEEEEcCCCCcEEEEeccCCCCceEEEecc
Q 048012 427 EKLELVSRVGISPAC----SVVQCAWHPKLNQIFATAGDKSQGGTHILYDP 473 (616)
Q Consensus 427 ~~~~~~~~~~~~~~~----~v~~~~~~p~~~~l~~~~~d~~~~~~~~v~~~ 473 (616)
...+...++.+.+.. .....+|+|+.+.|+++-- -..+-|++.
T Consensus 403 a~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~----~r~IDv~~~ 449 (498)
T KOG4328|consen 403 AKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRY----PRPIDVFDG 449 (498)
T ss_pred ccCCccceeeccCcccccccchhheeCCCccEEEEecc----CcceeEEcC
Confidence 455666666543321 3556799999888888765 334555553
No 141
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=3.1e-20 Score=187.20 Aligned_cols=336 Identities=17% Similarity=0.204 Sum_probs=234.7
Q ss_pred ceEEecCC-cccEEEEEECCCCCEEEEEEcCCcEEEEeCCCCccccccceecCCCCCCceEEEEecCCCCeEEEEeCCCe
Q 048012 141 NEIVLKGH-TKIVSALAVDHSGSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSDRFLCVTGSAQ 219 (616)
Q Consensus 141 ~~~~l~~H-~~~V~~v~~sp~g~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~s~d~~ 219 (616)
.+..+.+| ...|-+++|. .+.+|++.+.+|.|.-||+.+... +......++.|++++.+|.+..+++++.||.
T Consensus 60 ~~~vi~g~~drsIE~L~W~-e~~RLFS~g~sg~i~EwDl~~lk~-----~~~~d~~gg~IWsiai~p~~~~l~IgcddGv 133 (691)
T KOG2048|consen 60 LEPVIHGPEDRSIESLAWA-EGGRLFSSGLSGSITEWDLHTLKQ-----KYNIDSNGGAIWSIAINPENTILAIGCDDGV 133 (691)
T ss_pred eeEEEecCCCCceeeEEEc-cCCeEEeecCCceEEEEecccCce-----eEEecCCCcceeEEEeCCccceEEeecCCce
Confidence 34455555 5689999998 566889999999999999987532 2222346778999999999999999999997
Q ss_pred EEEEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEEEECCCccccceEEeee--ccCC
Q 048012 220 AKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKPK--LARP 297 (616)
Q Consensus 220 v~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~--~~~~ 297 (616)
+..++.....+.. -+.+....+.|.++.|+|++ ..|++|+.||.|++||+..+.......... ....
T Consensus 134 l~~~s~~p~~I~~----------~r~l~rq~sRvLslsw~~~~-~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~ 202 (691)
T KOG2048|consen 134 LYDFSIGPDKITY----------KRSLMRQKSRVLSLSWNPTG-TKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKR 202 (691)
T ss_pred EEEEecCCceEEE----------EeecccccceEEEEEecCCc-cEEEecccCceEEEEEcCCCceEEEeeecccccccC
Confidence 7777777665422 22244457899999999987 479999999999999998876555222111 1222
Q ss_pred CCccEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCCCCCceeeecCCCCCeEEEEEcCCCCeEEEEecCCcEEEEeCCCC
Q 048012 298 GRVAVTTCAWDCDGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHSDDITALKFSSDGRILLSRSFDGSLKVWDLRKM 377 (616)
Q Consensus 298 ~~~~v~~~~~sp~g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~v~lwd~~~~ 377 (616)
...-|.++.|-.+ ..|++|..-|+|.+||...+ ..+.....|...|.+|+..++++++++++.|+.|..|.....
T Consensus 203 ~~~iVWSv~~Lrd-~tI~sgDS~G~V~FWd~~~g----TLiqS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~ 277 (691)
T KOG2048|consen 203 EPTIVWSVLFLRD-STIASGDSAGTVTFWDSIFG----TLIQSHSCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTN 277 (691)
T ss_pred CceEEEEEEEeec-CcEEEecCCceEEEEcccCc----chhhhhhhhhcceeEEEEcCCCCeEEEccCCCceEEEEecCC
Confidence 3446788888754 57899999999999999977 688888999999999999999999999999999999987765
Q ss_pred CC-cceEecCCCCCCcceeEEECCCCCEEEEeecc---------c------------------cccCCCceEEEE-----
Q 048012 378 KE-PLKVFEDLPNNYAQTNVAFSPDEQLFLTGTSV---------E------------------RESTTGGLLCFY----- 424 (616)
Q Consensus 378 ~~-~~~~~~~~~~~~~v~~v~fspdg~~l~~gs~~---------~------------------~~~~~dg~i~iw----- 424 (616)
+. -+.......+...+.+++..++ .|++|+.. . .....+..+.+|
T Consensus 278 ~~~wv~~~~r~~h~hdvrs~av~~~--~l~sgG~d~~l~i~~s~~~~~~~h~~~~~~p~~~~v~~a~~~~L~~~w~~h~v 355 (691)
T KOG2048|consen 278 KSEWVINSRRDLHAHDVRSMAVIEN--ALISGGRDFTLAICSSREFKNMDHRQKNLFPASDRVSVAPENRLLVLWKAHGV 355 (691)
T ss_pred ccceeeeccccCCcccceeeeeecc--eEEecceeeEEEEccccccCchhhhccccccccceeecCccceEEEEeccccc
Confidence 43 1122112223344777777665 44444410 0 001122233344
Q ss_pred ---eCCCC--------ceEEEEecCCCCCeEEEEEcCCCCcEEEEeccC-------------------------------
Q 048012 425 ---DREKL--------ELVSRVGISPACSVVQCAWHPKLNQIFATAGDK------------------------------- 462 (616)
Q Consensus 425 ---d~~~~--------~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~------------------------------- 462 (616)
.+.+. ..+..+.......|.+.+.+|+++.|+.+.-..
T Consensus 356 ~lwrlGS~~~~g~~~~~~Llkl~~k~~~nIs~~aiSPdg~~Ia~st~~~~~iy~L~~~~~vk~~~v~~~~~~~~~a~~i~ 435 (691)
T KOG2048|consen 356 DLWRLGSVILQGEYNYIHLLKLFTKEKENISCAAISPDGNLIAISTVSRTKIYRLQPDPNVKVINVDDVPLALLDASAIS 435 (691)
T ss_pred cceeccCcccccccChhhheeeecCCccceeeeccCCCCCEEEEeeccceEEEEeccCcceeEEEeccchhhhccceeeE
Confidence 32222 123333344456788999999999999887211
Q ss_pred -----------------------------------CCCceEEEecccCCCCCcEEEEecCCcceecccccCCc
Q 048012 463 -----------------------------------SQGGTHILYDPRLSERGALVCVARAPRKKSVDDFEVAP 500 (616)
Q Consensus 463 -----------------------------------~~~~~~~v~~~~~s~~g~~l~s~~~d~~~~~wd~~~~~ 500 (616)
....+-.+-.+..|++|.+||+.+..+.|.+|++....
T Consensus 436 ftid~~k~~~~s~~~~~le~~el~~ps~kel~~~~~~~~~~~I~~l~~SsdG~yiaa~~t~g~I~v~nl~~~~ 508 (691)
T KOG2048|consen 436 FTIDKNKLFLVSKNIFSLEEFELETPSFKELKSIQSQAKCPSISRLVVSSDGNYIAAISTRGQIFVYNLETLE 508 (691)
T ss_pred EEecCceEEEEecccceeEEEEecCcchhhhhccccccCCCcceeEEEcCCCCEEEEEeccceEEEEEcccce
Confidence 00111122225578999999999999999999996654
No 142
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.89 E-value=7.8e-22 Score=182.49 Aligned_cols=299 Identities=19% Similarity=0.280 Sum_probs=211.3
Q ss_pred EecCCcccEEEEEECC-----CCCEEEEEEcCCcEEEEeCCCCccccccceec-CCCCCCceEEEEecCCC----CeEEE
Q 048012 144 VLKGHTKIVSALAVDH-----SGSRVLSGSYDYTVRMYDFQGMNSRLQSFRQL-EPSEGHQVRNLSWSPTS----DRFLC 213 (616)
Q Consensus 144 ~l~~H~~~V~~v~~sp-----~g~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~-~~~~~~~v~~l~~sp~g----~~l~~ 213 (616)
...+|+.+|..++|++ .-..+|+.+ ...+.||...... -.+.+... ...+......++|+-+. .+|++
T Consensus 33 l~ed~~~~I~gv~fN~~~~~~e~~vfatvG-~~rvtiy~c~~d~-~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~ 110 (385)
T KOG1034|consen 33 LKEDHNKPIFGVAFNSFLGCDEPQVFATVG-GNRVTIYECPGDG-GIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAA 110 (385)
T ss_pred hhccCCCccceeeeehhcCCCCCceEEEeC-CcEEEEEEECCcc-ceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEe
Confidence 4568999999999984 234566665 4568888876533 11222222 22345567888887653 36777
Q ss_pred EeCCCeEEEEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEEEECCCccccceEEeee
Q 048012 214 VTGSAQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKPK 293 (616)
Q Consensus 214 ~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~ 293 (616)
++.-|.|+|.|+...++ ...+.+|...|+.+.|+|...++++++|.|.+||+||+++..++..+ .
T Consensus 111 ~G~~GvIrVid~~~~~~------------~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~Vf---G 175 (385)
T KOG1034|consen 111 GGYLGVIRVIDVVSGQC------------SKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVF---G 175 (385)
T ss_pred ecceeEEEEEecchhhh------------ccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEe---c
Confidence 88889999999987764 45578999999999999999999999999999999999987765544 2
Q ss_pred ccCCCCccEEEEEECCCCCeEEEEeCCCcEEEEeCCCCC------------------------CCCCceeeecCCCCCeE
Q 048012 294 LARPGRVAVTTCAWDCDGKCIAGGIGDGSIQVWNLKPGW------------------------GSRPDIHVEKGHSDDIT 349 (616)
Q Consensus 294 ~~~~~~~~v~~~~~sp~g~~l~~g~~dg~I~iwd~~~~~------------------------~~~~~~~~~~~h~~~V~ 349 (616)
...+|+..|.++.|+.+|.+|++++.|.+|.+|++.... ...+...+..-|...|-
T Consensus 176 G~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVD 255 (385)
T KOG1034|consen 176 GVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVD 255 (385)
T ss_pred ccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHH
Confidence 335788899999999999999999999999999998320 01111223456788888
Q ss_pred EEEEcCCCCeEEEEecCCcEEEEeCCCCCCcc-------------eEecCCCCCCcceeEEECCCCCEEEEeeccccccC
Q 048012 350 ALKFSSDGRILLSRSFDGSLKVWDLRKMKEPL-------------KVFEDLPNNYAQTNVAFSPDEQLFLTGTSVEREST 416 (616)
Q Consensus 350 ~l~~spdg~~l~s~s~Dg~v~lwd~~~~~~~~-------------~~~~~~~~~~~v~~v~fspdg~~l~~gs~~~~~~~ 416 (616)
|+.|- |+++++-|.++.|..|-.-.....+ ..+.-.....+....+|.|-+++|+.|.
T Consensus 256 Cvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gn------- 326 (385)
T KOG1034|consen 256 CVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGN------- 326 (385)
T ss_pred HHHHH--hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhcc-------
Confidence 88887 7899999999999999873222111 1111111122233456778899999999
Q ss_pred CCceEEEEeCCCCceEE--EEecC-CCCCeEEEEEcCCCCcEEEEeccCCCCceEEEec
Q 048012 417 TGGLLCFYDREKLELVS--RVGIS-PACSVVQCAWHPKLNQIFATAGDKSQGGTHILYD 472 (616)
Q Consensus 417 ~dg~i~iwd~~~~~~~~--~~~~~-~~~~v~~~~~~p~~~~l~~~~~d~~~~~~~~v~~ 472 (616)
..|.|++||++..+... ++..+ ....|.+.+|+.++..|+..+. ++.+.-|+
T Consensus 327 q~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcd----d~~Vwrwd 381 (385)
T KOG1034|consen 327 QSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCD----DGTVWRWD 381 (385)
T ss_pred CCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeC----CCcEEEEE
Confidence 89999999998876532 22111 2245777777777777777776 44555444
No 143
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.89 E-value=1.3e-21 Score=179.70 Aligned_cols=249 Identities=17% Similarity=0.319 Sum_probs=196.9
Q ss_pred CCCCCCceEEEEecCCCCeEEEEeCCCeEEEEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeC
Q 048012 192 EPSEGHQVRNLSWSPTSDRFLCVTGSAQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSE 271 (616)
Q Consensus 192 ~~~~~~~v~~l~~sp~g~~l~~~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~ 271 (616)
..+|...|+.++-......+.+++.|.+.+||.++.+. ++..+.||.+.|+++.||+.+ .++++++.
T Consensus 144 ~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~------------CL~~Y~GH~GSVNsikfh~s~-~L~lTaSG 210 (481)
T KOG0300|consen 144 LEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGA------------CLATYTGHTGSVNSIKFHNSG-LLLLTASG 210 (481)
T ss_pred hcccccceeeehhhcCCcceeecccccceeEEeecccc------------ceeeecccccceeeEEecccc-ceEEEccC
Confidence 34577789999888877888899999999999999775 366689999999999999976 69999999
Q ss_pred CCCEEEEEC------CCcc---------------------------ccceEEee-eccCCCCccEEEEEECCCCCeEEEE
Q 048012 272 DGSLRIWDV------NEFK---------------------------SQKQVIKP-KLARPGRVAVTTCAWDCDGKCIAGG 317 (616)
Q Consensus 272 Dg~v~iwd~------~~~~---------------------------~~~~~~~~-~~~~~~~~~v~~~~~sp~g~~l~~g 317 (616)
|++..||.. .... ....+..+ ....+|+..|.++.|-..|+.++++
T Consensus 211 D~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTa 290 (481)
T KOG0300|consen 211 DETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTA 290 (481)
T ss_pred CcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeee
Confidence 999999972 1100 00011111 1224677789999999999999999
Q ss_pred eCCCcEEEEeCCCCCCCCCceeeecCCCCCeEEEEEcCCCCeEEEEecCCcEEEEeCCCCCCcceEecCCCCCCcceeEE
Q 048012 318 IGDGSIQVWNLKPGWGSRPDIHVEKGHSDDITALKFSSDGRILLSRSFDGSLKVWDLRKMKEPLKVFEDLPNNYAQTNVA 397 (616)
Q Consensus 318 ~~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~v~~v~ 397 (616)
+.|.+..+||+.++ ..+..+.+|....+.++-+|..+++++.+.|.+.+|||++..-..+.+|.+|... |+++.
T Consensus 291 SWDRTAnlwDVEtg----e~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdt--VTS~v 364 (481)
T KOG0300|consen 291 SWDRTANLWDVETG----EVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDT--VTSVV 364 (481)
T ss_pred eccccceeeeeccC----ceeccccCcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeecccccc--eeEEE
Confidence 99999999999988 7899999999999999999999999999999999999999766677888876544 99999
Q ss_pred ECCCCCEEEEeeccccccCCCceEEEEeCCCCc-eEEEEecCCCCCeEEEEEcCCCCcEEEEeccCCCCceEEEecc
Q 048012 398 FSPDEQLFLTGTSVERESTTGGLLCFYDREKLE-LVSRVGISPACSVVQCAWHPKLNQIFATAGDKSQGGTHILYDP 473 (616)
Q Consensus 398 fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~~~~~~~v~~~ 473 (616)
|.-+. .+++|+ .|.+|+|||+++.. .+.++. ..++++.++.+.....|+.-.. ...+++||+
T Consensus 365 F~~dd-~vVSgS-------DDrTvKvWdLrNMRsplATIR--tdS~~NRvavs~g~~iIAiPhD----NRqvRlfDl 427 (481)
T KOG0300|consen 365 FNTDD-RVVSGS-------DDRTVKVWDLRNMRSPLATIR--TDSPANRVAVSKGHPIIAIPHD----NRQVRLFDL 427 (481)
T ss_pred EecCC-ceeecC-------CCceEEEeeeccccCcceeee--cCCccceeEeecCCceEEeccC----CceEEEEec
Confidence 98765 466777 89999999998875 455554 3466777777766555554443 455666664
No 144
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.89 E-value=4.2e-22 Score=203.12 Aligned_cols=275 Identities=18% Similarity=0.283 Sum_probs=203.2
Q ss_pred eEEEEecCCCCeEEEEeCCCeEEEEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEEE
Q 048012 199 VRNLSWSPTSDRFLCVTGSAQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIW 278 (616)
Q Consensus 199 v~~l~~sp~g~~l~~~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iw 278 (616)
...|...++-..+++++ ...++||.+....... ...++ .+....-...+..+.|+....++|+|++..|.|.+|
T Consensus 42 ~nAIs~nr~~~qiv~AG-rs~lklyai~~~~~~~----~~~~~-~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vW 115 (839)
T KOG0269|consen 42 ANAISVNRDINQIVVAG-RSLLKLYAINPNDFSE----KCNHR-FKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVW 115 (839)
T ss_pred cceEeecCCcceeEEec-ccceeeEeeCcccCCc----ceeee-cccccceeeehhhcccccchhhhheeecCCCcEEEE
Confidence 56667777777766554 4467777765432111 01111 111222334567788987777899999999999999
Q ss_pred ECCCccccceEEeeeccCCCCccEEEEEECC-CCCeEEEEeCCCcEEEEeCCCCCCCCCceeeecCCCCCeEEEEEcC-C
Q 048012 279 DVNEFKSQKQVIKPKLARPGRVAVTTCAWDC-DGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHSDDITALKFSS-D 356 (616)
Q Consensus 279 d~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp-d 356 (616)
|+......+.+. ....|.-.++++.|++ ..++|++|+.||+|++||++.. .....+.+....|..|.|+| .
T Consensus 116 dlnk~~rnk~l~---~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~----~S~~t~~~nSESiRDV~fsp~~ 188 (839)
T KOG0269|consen 116 DLNKSIRNKLLT---VFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSK----KSKSTFRSNSESIRDVKFSPGY 188 (839)
T ss_pred ecCccccchhhh---HhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecc----cccccccccchhhhceeeccCC
Confidence 998632111111 1124555899999998 4678999999999999999975 55666677778899999999 7
Q ss_pred CCeEEEEecCCcEEEEeCCCCCCcceEecCCCCCCcceeEEECCCCCEEEEeeccccccCCCceEEEEeCCCCceEEEEe
Q 048012 357 GRILLSRSFDGSLKVWDLRKMKEPLKVFEDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREKLELVSRVG 436 (616)
Q Consensus 357 g~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~~~~~~~~~ 436 (616)
+++++++...|.|++||+|...++...+.. |.++|.++.|+|++.+||+|+ .|+.|+|||+.+.+....+.
T Consensus 189 ~~~F~s~~dsG~lqlWDlRqp~r~~~k~~A--H~GpV~c~nwhPnr~~lATGG-------RDK~vkiWd~t~~~~~~~~t 259 (839)
T KOG0269|consen 189 GNKFASIHDSGYLQLWDLRQPDRCEKKLTA--HNGPVLCLNWHPNREWLATGG-------RDKMVKIWDMTDSRAKPKHT 259 (839)
T ss_pred CceEEEecCCceEEEeeccCchhHHHHhhc--ccCceEEEeecCCCceeeecC-------CCccEEEEeccCCCccceeE
Confidence 789999999999999999988877777665 567799999999999999999 89999999998776655555
Q ss_pred cCCCCCeEEEEEcCCCCcEEEEeccCCCCceEEEecccC---------------------CCCCcEEEEecCCcceeccc
Q 048012 437 ISPACSVVQCAWHPKLNQIFATAGDKSQGGTHILYDPRL---------------------SERGALVCVARAPRKKSVDD 495 (616)
Q Consensus 437 ~~~~~~v~~~~~~p~~~~l~~~~~d~~~~~~~~v~~~~~---------------------s~~g~~l~s~~~d~~~~~wd 495 (616)
+....+|.+|.|-|...+.+++|+- ..+..+.|||++. +.|-..|.+++.|+++-...
T Consensus 260 InTiapv~rVkWRP~~~~hLAtcsm-v~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~qh~ 338 (839)
T KOG0269|consen 260 INTIAPVGRVKWRPARSYHLATCSM-VVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVLQHL 338 (839)
T ss_pred EeecceeeeeeeccCccchhhhhhc-cccceEEEEeeccccccceeeeccCccccceeccCCCceeeEeecCccHHHHhh
Confidence 5566889999999998777776652 2478899999662 22456777888887765444
Q ss_pred c
Q 048012 496 F 496 (616)
Q Consensus 496 ~ 496 (616)
+
T Consensus 339 ~ 339 (839)
T KOG0269|consen 339 F 339 (839)
T ss_pred h
Confidence 4
No 145
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=1.1e-20 Score=196.36 Aligned_cols=244 Identities=16% Similarity=0.241 Sum_probs=197.4
Q ss_pred CCCCceEEEEecCCCCeEEEEeCCCeEEEEECCCC-eeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCC
Q 048012 194 SEGHQVRNLSWSPTSDRFLCVTGSAQAKIYDRDGL-TLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSED 272 (616)
Q Consensus 194 ~~~~~v~~l~~sp~g~~l~~~s~d~~v~vwd~~~~-~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~D 272 (616)
.|....+.|+|.++|..|++++.|+.|++|+.... +. ...+.-+...|.+++... +.|++|+.+
T Consensus 11 aht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~------------P~ti~~~g~~v~~ia~~s---~~f~~~s~~ 75 (933)
T KOG1274|consen 11 AHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEE------------PETIDISGELVSSIACYS---NHFLTGSEQ 75 (933)
T ss_pred hccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccC------------CchhhccCceeEEEeecc---cceEEeecc
Confidence 45666899999999999999999999999997654 21 111222667777777653 489999999
Q ss_pred CCEEEEECCCccccceEEeeeccCCCCccEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCCCCCceeeecCCCCCeEEEE
Q 048012 273 GSLRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWDCDGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHSDDITALK 352 (616)
Q Consensus 273 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~ 352 (616)
++|.+|.+..+.....+.+... ++.+++|+.+|+++|.|+.|-.|++.++... .....+.+|..+|.+|.
T Consensus 76 ~tv~~y~fps~~~~~iL~Rftl------p~r~~~v~g~g~~iaagsdD~~vK~~~~~D~----s~~~~lrgh~apVl~l~ 145 (933)
T KOG1274|consen 76 NTVLRYKFPSGEEDTILARFTL------PIRDLAVSGSGKMIAAGSDDTAVKLLNLDDS----SQEKVLRGHDAPVLQLS 145 (933)
T ss_pred ceEEEeeCCCCCccceeeeeec------cceEEEEecCCcEEEeecCceeEEEEecccc----chheeecccCCceeeee
Confidence 9999999988766544443332 7899999999999999999999999999876 57778999999999999
Q ss_pred EcCCCCeEEEEecCCcEEEEeCCCCCCcceEecCCC------CCCcceeEEECCCCCEEEEeeccccccCCCceEEEEeC
Q 048012 353 FSSDGRILLSRSFDGSLKVWDLRKMKEPLKVFEDLP------NNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDR 426 (616)
Q Consensus 353 ~spdg~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~------~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~ 426 (616)
|+|.+++||+.+.||.|+|||+.++. ...++.... ....++.++|+|++..+++.. .++.|++|+.
T Consensus 146 ~~p~~~fLAvss~dG~v~iw~~~~~~-~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~-------~d~~Vkvy~r 217 (933)
T KOG1274|consen 146 YDPKGNFLAVSSCDGKVQIWDLQDGI-LSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPP-------VDNTVKVYSR 217 (933)
T ss_pred EcCCCCEEEEEecCceEEEEEcccch-hhhhcccCCccccccccceeeeeeecCCCCeEEeec-------cCCeEEEEcc
Confidence 99999999999999999999998643 333333321 123467789999976666666 7999999999
Q ss_pred CCCceEEEEecCCCC-CeEEEEEcCCCCcEEEEeccCCCCceEEEeccc
Q 048012 427 EKLELVSRVGISPAC-SVVQCAWHPKLNQIFATAGDKSQGGTHILYDPR 474 (616)
Q Consensus 427 ~~~~~~~~~~~~~~~-~v~~~~~~p~~~~l~~~~~d~~~~~~~~v~~~~ 474 (616)
.+++....+...+.. .+..+.|+|.|.+|++++- ++.+.||++.
T Consensus 218 ~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~----~g~I~vWnv~ 262 (933)
T KOG1274|consen 218 KGWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTL----DGQILVWNVD 262 (933)
T ss_pred CCceeheeecccccccceEEEEEcCCCcEEeeecc----CCcEEEEecc
Confidence 999998888654443 3899999999999999997 7789999977
No 146
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.89 E-value=1.5e-21 Score=187.46 Aligned_cols=244 Identities=20% Similarity=0.290 Sum_probs=181.2
Q ss_pred CCEEEEEEcCCcEEEEeCCCCccccccce----------------ecCCCCCCceEEEEecCCC-CeEEEEeCCCeEEEE
Q 048012 161 GSRVLSGSYDYTVRMYDFQGMNSRLQSFR----------------QLEPSEGHQVRNLSWSPTS-DRFLCVTGSAQAKIY 223 (616)
Q Consensus 161 g~~lasgs~Dg~i~iwd~~~~~~~~~~~~----------------~~~~~~~~~v~~l~~sp~g-~~l~~~s~d~~v~vw 223 (616)
|+++|.|..|..|.|||+.-.+.....+. .....|...|.+|+|+..- ..|++|+.|.+|++|
T Consensus 192 gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lW 271 (463)
T KOG0270|consen 192 GNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLW 271 (463)
T ss_pred cceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEE
Confidence 68999999999999999864332211111 1122455568888998764 457889999999999
Q ss_pred ECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEEEECCCccccceEEeeeccCCCCccEE
Q 048012 224 DRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPGRVAVT 303 (616)
Q Consensus 224 d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~ 303 (616)
|++.++. ...+..|...|.++.|+|....+|++|+.|++|++.|++............ +.|-
T Consensus 272 D~~~g~p------------~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~------g~VE 333 (463)
T KOG0270|consen 272 DVDTGKP------------KSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFD------GEVE 333 (463)
T ss_pred EcCCCCc------------ceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEec------cceE
Confidence 9998764 334668999999999999999999999999999999998633333222221 2688
Q ss_pred EEEECCCC-CeEEEEeCCCcEEEEeCCCCCCCCCceeeecCCCCCeEEEEEcCC-CCeEEEEecCCcEEEEeCCCCCCcc
Q 048012 304 TCAWDCDG-KCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHSDDITALKFSSD-GRILLSRSFDGSLKVWDLRKMKEPL 381 (616)
Q Consensus 304 ~~~~sp~g-~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~spd-g~~l~s~s~Dg~v~lwd~~~~~~~~ 381 (616)
.++|++.. ..+++++.||+|+-+|+|.. ..++..+++|.+.|.+|+++.. -.+|++++.|+.|++|++.... +.
T Consensus 334 kv~w~~~se~~f~~~tddG~v~~~D~R~~---~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~-~~ 409 (463)
T KOG0270|consen 334 KVAWDPHSENSFFVSTDDGTVYYFDIRNP---GKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDS-PK 409 (463)
T ss_pred EEEecCCCceeEEEecCCceEEeeecCCC---CCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCC-Cc
Confidence 99999854 56888899999999999985 3788899999999999999984 4688999999999999997432 22
Q ss_pred eEecCCCCCCcceeEEECCCCCE-EEEeeccccccCCCceEEEEeCCCCceEE
Q 048012 382 KVFEDLPNNYAQTNVAFSPDEQL-FLTGTSVERESTTGGLLCFYDREKLELVS 433 (616)
Q Consensus 382 ~~~~~~~~~~~v~~v~fspdg~~-l~~gs~~~~~~~~dg~i~iwd~~~~~~~~ 433 (616)
.+....-..+...|+++.|+-.+ |+.|+ ..+.++|||+.+...+.
T Consensus 410 ~v~~~~~~~~rl~c~~~~~~~a~~la~GG-------~k~~~~vwd~~~~~~V~ 455 (463)
T KOG0270|consen 410 SVKEHSFKLGRLHCFALDPDVAFTLAFGG-------EKAVLRVWDIFTNSPVR 455 (463)
T ss_pred ccccccccccceeecccCCCcceEEEecC-------ccceEEEeecccChhHH
Confidence 22111111223567788887554 45555 66789999988776543
No 147
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.88 E-value=2.3e-20 Score=171.44 Aligned_cols=281 Identities=13% Similarity=0.180 Sum_probs=187.5
Q ss_pred ecCCCCCCceEEEEecCCCCeEEEEeCCCeEEEEECCCCe-eeeEeeCceeEeecccCCCcccceEEEEEc-CCCCCEEE
Q 048012 190 QLEPSEGHQVRNLSWSPTSDRFLCVTGSAQAKIYDRDGLT-LGEFVKGDMYIRDLKNTKGHICGLTCGEWH-PKTKETIL 267 (616)
Q Consensus 190 ~~~~~~~~~v~~l~~sp~g~~l~~~s~d~~v~vwd~~~~~-~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~-p~~~~~l~ 267 (616)
.+...|..-|+++.|.+.|+++++++.|++|+|||.+... .+ ......+.|.+.|..+.|. |.-++.++
T Consensus 7 pi~s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W---------~~Ts~Wrah~~Si~rV~WAhPEfGqvvA 77 (361)
T KOG2445|consen 7 PIDSGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTW---------SCTSSWRAHDGSIWRVVWAHPEFGQVVA 77 (361)
T ss_pred ccccCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCce---------EEeeeEEecCCcEEEEEecCccccceEE
Confidence 3445566779999999999999999999999999964322 11 1233457899999999994 55568999
Q ss_pred EEeCCCCEEEEECCC--cccc-ceEEeeeccCCCCccEEEEEECCC--CCeEEEEeCCCcEEEEeCCCCCC--CCCceee
Q 048012 268 TSSEDGSLRIWDVNE--FKSQ-KQVIKPKLARPGRVAVTTCAWDCD--GKCIAGGIGDGSIQVWNLKPGWG--SRPDIHV 340 (616)
Q Consensus 268 s~s~Dg~v~iwd~~~--~~~~-~~~~~~~~~~~~~~~v~~~~~sp~--g~~l~~g~~dg~I~iwd~~~~~~--~~~~~~~ 340 (616)
+|+.|++|+||.-.. .+.. ............+..|+.+.|.|. |-.||+++.||.||||+.-.... ...+...
T Consensus 78 ~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~E 157 (361)
T KOG2445|consen 78 TCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHE 157 (361)
T ss_pred EEecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhh
Confidence 999999999997531 1111 122222222345568999999984 77899999999999998754310 1112222
Q ss_pred e-------cCCCCCeEEEEEcC---CCCeEEEEecC-----CcEEEEeCCCCC-CcceEecCCCCCCcceeEEECCC---
Q 048012 341 E-------KGHSDDITALKFSS---DGRILLSRSFD-----GSLKVWDLRKMK-EPLKVFEDLPNNYAQTNVAFSPD--- 401 (616)
Q Consensus 341 ~-------~~h~~~V~~l~~sp---dg~~l~s~s~D-----g~v~lwd~~~~~-~~~~~~~~~~~~~~v~~v~fspd--- 401 (616)
+ ..+.....||.|++ ...+||.|+.+ +.++||...... +..+.-.-..+..+|+.++|.|+
T Consensus 158 i~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr 237 (361)
T KOG2445|consen 158 IQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGR 237 (361)
T ss_pred hhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCC
Confidence 2 24667789999998 34678888765 479999877655 33333333356678999999996
Q ss_pred -CCEEEEeeccccccCCCceEEEEeCCCCce-EEEEecCCCCCeEEEEEcCCCCcEEEEeccCCCCceEEEecccCCCCC
Q 048012 402 -EQLFLTGTSVERESTTGGLLCFYDREKLEL-VSRVGISPACSVVQCAWHPKLNQIFATAGDKSQGGTHILYDPRLSERG 479 (616)
Q Consensus 402 -g~~l~~gs~~~~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~~~~~~~v~~~~~s~~g 479 (616)
-.+|++++ .|| |+||.+..... +..-......... +.+...++.-+ +|...||.+.|.--|
T Consensus 238 ~y~~lAvA~-------kDg-v~I~~v~~~~s~i~~ee~~~~~~~~------~l~v~~vs~~~---~H~~~VWrv~wNmtG 300 (361)
T KOG2445|consen 238 SYHLLAVAT-------KDG-VRIFKVKVARSAIEEEEVLAPDLMT------DLPVEKVSELD---DHNGEVWRVRWNMTG 300 (361)
T ss_pred ceeeEEEee-------cCc-EEEEEEeeccchhhhhcccCCCCcc------ccceEEeeecc---CCCCceEEEEEeeee
Confidence 45788888 889 99999874321 1000000000111 12233333332 677777777777778
Q ss_pred cEEEEecCCcceecccc
Q 048012 480 ALVCVARAPRKKSVDDF 496 (616)
Q Consensus 480 ~~l~s~~~d~~~~~wd~ 496 (616)
..|++.+.||.+|+|..
T Consensus 301 tiLsStGdDG~VRLWka 317 (361)
T KOG2445|consen 301 TILSSTGDDGCVRLWKA 317 (361)
T ss_pred eEEeecCCCceeeehhh
Confidence 88888888888888765
No 148
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.88 E-value=2.8e-22 Score=213.37 Aligned_cols=292 Identities=16% Similarity=0.329 Sum_probs=215.7
Q ss_pred EEEECCCCC-EEEEE----------EcCCcEEEEeCCCCccc--cccceecCCCCCCceEEEEecCCCCe----EEEEeC
Q 048012 154 ALAVDHSGS-RVLSG----------SYDYTVRMYDFQGMNSR--LQSFRQLEPSEGHQVRNLSWSPTSDR----FLCVTG 216 (616)
Q Consensus 154 ~v~~sp~g~-~lasg----------s~Dg~i~iwd~~~~~~~--~~~~~~~~~~~~~~v~~l~~sp~g~~----l~~~s~ 216 (616)
.++|+|.+. ++|+| +.+.++-||.+.-.... +...- .....+..+.|+|.+.|.. |+.|..
T Consensus 11 ~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~dlk~~~--s~~s~~rF~kL~W~~~g~~~~GlIaGG~e 88 (1049)
T KOG0307|consen 11 TFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESSDLKPVG--SLQSSNRFNKLAWGSYGSHSHGLIAGGLE 88 (1049)
T ss_pred eEEecCCCchhhHHHhhhhccccccccccccceeeecccCccccccccc--cccccccceeeeecccCCCccceeecccc
Confidence 458888886 55544 33556666655432211 11111 1123456899999998877 777778
Q ss_pred CCeEEEEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEEEECCCccccceEEeeeccC
Q 048012 217 SAQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLAR 296 (616)
Q Consensus 217 d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~ 296 (616)
||.|.+||.....- ......+.....|.+.|..+.|++...++|++|+.||.|.|||+++........ ..
T Consensus 89 dG~I~ly~p~~~~~------~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~----~~ 158 (1049)
T KOG0307|consen 89 DGNIVLYDPASIIA------NASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPG----SQ 158 (1049)
T ss_pred CCceEEecchhhcc------CcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCC----CC
Confidence 99999999775310 011123666789999999999999998999999999999999998754333221 11
Q ss_pred CCCccEEEEEECCC-CCeEEEEeCCCcEEEEeCCCCCCCCCceeeecCCC--CCeEEEEEcCCC-CeEEEEecCC---cE
Q 048012 297 PGRVAVTTCAWDCD-GKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHS--DDITALKFSSDG-RILLSRSFDG---SL 369 (616)
Q Consensus 297 ~~~~~v~~~~~sp~-g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~h~--~~V~~l~~spdg-~~l~s~s~Dg---~v 369 (616)
.-...|.+++|+.. .+.|++++.+|.+.|||++.. +.+..+..|. ..+..|+|+|+. ..|++++.|. .|
T Consensus 159 ~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~----~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~Pvi 234 (1049)
T KOG0307|consen 159 APPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKK----KPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVI 234 (1049)
T ss_pred CCcccceEeccchhhhHHhhccCCCCCceeccccCC----CcccccccCCCccceeeeeeCCCCceeeeeecCCCCCcee
Confidence 22337999999874 557889999999999999974 3444444443 357899999976 4566666554 59
Q ss_pred EEEeCCCCCCcceEecCCCCCCcceeEEECCCC-CEEEEeeccccccCCCceEEEEeCCCCceEEEEecCCCCCeEEEEE
Q 048012 370 KVWDLRKMKEPLKVFEDLPNNYAQTNVAFSPDE-QLFLTGTSVERESTTGGLLCFYDREKLELVSRVGISPACSVVQCAW 448 (616)
Q Consensus 370 ~lwd~~~~~~~~~~~~~~~~~~~v~~v~fspdg-~~l~~gs~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~ 448 (616)
.+||+|....+++++..|..+ |.++.|++.+ ++|++++ .|+.|.+|+.++++.+..+.. ....+..+.|
T Consensus 235 qlWDlR~assP~k~~~~H~~G--ilslsWc~~D~~lllSsg-------kD~~ii~wN~~tgEvl~~~p~-~~nW~fdv~w 304 (1049)
T KOG0307|consen 235 QLWDLRFASSPLKILEGHQRG--ILSLSWCPQDPRLLLSSG-------KDNRIICWNPNTGEVLGELPA-QGNWCFDVQW 304 (1049)
T ss_pred EeecccccCCchhhhcccccc--eeeeccCCCCchhhhccc-------CCCCeeEecCCCceEeeecCC-CCcceeeeee
Confidence 999999988999999776544 9999999977 7888888 899999999999999999976 5678999999
Q ss_pred cCCCCcEEEEeccCCCCceEEEeccc
Q 048012 449 HPKLNQIFATAGDKSQGGTHILYDPR 474 (616)
Q Consensus 449 ~p~~~~l~~~~~d~~~~~~~~v~~~~ 474 (616)
.|...-+++... .++.+.||.+.
T Consensus 305 ~pr~P~~~A~as---fdgkI~I~sl~ 327 (1049)
T KOG0307|consen 305 CPRNPSVMAAAS---FDGKISIYSLQ 327 (1049)
T ss_pred cCCCcchhhhhe---eccceeeeeee
Confidence 999886666554 37888888875
No 149
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.88 E-value=2.5e-21 Score=182.13 Aligned_cols=253 Identities=17% Similarity=0.321 Sum_probs=181.1
Q ss_pred CCCCceEEEEecCCCCe--EEEEeCCCeEEEEECCCCe----eeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEE
Q 048012 194 SEGHQVRNLSWSPTSDR--FLCVTGSAQAKIYDRDGLT----LGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETIL 267 (616)
Q Consensus 194 ~~~~~v~~l~~sp~g~~--l~~~s~d~~v~vwd~~~~~----~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~ 267 (616)
.|...+..+.-++-++. .++-+..|.|+||++.... -......+...+.+.+..+|...-..++|+|.....|+
T Consensus 149 ~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~Ll 228 (440)
T KOG0302|consen 149 PHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLL 228 (440)
T ss_pred ccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccccc
Confidence 44555666666665544 4445567999999976321 01111222334567778999999999999996555688
Q ss_pred EEeCCCCEEEEECCCccccceEEeeeccCCCCccEEEEEECCC-CCeEEEEeCCCcEEEEeCCCCCCCCCceeeecCCCC
Q 048012 268 TSSEDGSLRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWDCD-GKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHSD 346 (616)
Q Consensus 268 s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~-g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~h~~ 346 (616)
+|..-+.|++|...++.-. +- .....+|...|-.++|+|. ...|++|+.||+|+|||+|.+ ..+.....++|.+
T Consensus 229 sGDc~~~I~lw~~~~g~W~--vd-~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~--~~~~~~~~kAh~s 303 (440)
T KOG0302|consen 229 SGDCVKGIHLWEPSTGSWK--VD-QRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSG--PKKAAVSTKAHNS 303 (440)
T ss_pred cCccccceEeeeeccCcee--ec-CccccccccchhhhccCCccCceEEeeecCceEEEEEecCC--CccceeEeeccCC
Confidence 9988899999998874322 11 1122347778999999995 458899999999999999987 3444455599999
Q ss_pred CeEEEEEcCCCCeEEEEecCCcEEEEeCCCCC--CcceEecCCCCCCcceeEEECCCC-CEEEEeeccccccCCCceEEE
Q 048012 347 DITALKFSSDGRILLSRSFDGSLKVWDLRKMK--EPLKVFEDLPNNYAQTNVAFSPDE-QLFLTGTSVERESTTGGLLCF 423 (616)
Q Consensus 347 ~V~~l~~spdg~~l~s~s~Dg~v~lwd~~~~~--~~~~~~~~~~~~~~v~~v~fspdg-~~l~~gs~~~~~~~~dg~i~i 423 (616)
.|+.|.|+....+||+|+.||+++|||+|..+ .++..+.. |..+|++|.|+|.. ..|++++ .|..|.|
T Consensus 304 DVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~--Hk~pItsieW~p~e~s~iaasg-------~D~Qiti 374 (440)
T KOG0302|consen 304 DVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKY--HKAPITSIEWHPHEDSVIAASG-------EDNQITI 374 (440)
T ss_pred ceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEe--ccCCeeEEEeccccCceEEecc-------CCCcEEE
Confidence 99999999988899999999999999999754 56777766 45669999999964 4555555 8999999
Q ss_pred EeCCCCc---------------eEEEEecCC--CCCeEEEEEcCCCCcEEEEec
Q 048012 424 YDREKLE---------------LVSRVGISP--ACSVVQCAWHPKLNQIFATAG 460 (616)
Q Consensus 424 wd~~~~~---------------~~~~~~~~~--~~~v~~~~~~p~~~~l~~~~~ 460 (616)
||+..-. +..++.+-| ...|..+.||++.+-++++++
T Consensus 375 WDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa 428 (440)
T KOG0302|consen 375 WDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTA 428 (440)
T ss_pred EEeeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEec
Confidence 9974221 111122222 235778899998776665554
No 150
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.88 E-value=1.1e-19 Score=182.29 Aligned_cols=263 Identities=13% Similarity=0.150 Sum_probs=181.2
Q ss_pred EecCCcccEEEEEECCCCCEE-EEEEcCCcEEEEeCCCCccccccceecCCCCCCceEEEEecCCCCeEEEEe-CCCeEE
Q 048012 144 VLKGHTKIVSALAVDHSGSRV-LSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSDRFLCVT-GSAQAK 221 (616)
Q Consensus 144 ~l~~H~~~V~~v~~sp~g~~l-asgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~s-~d~~v~ 221 (616)
.+.+|. .+.+++|+|+|.++ ++++.++.|++||+.++.. ...+. ....+..+.|+|+++.+++++ .++.++
T Consensus 26 ~~~~~~-~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~----~~~~~--~~~~~~~~~~~~~g~~l~~~~~~~~~l~ 98 (300)
T TIGR03866 26 TFPVGQ-RPRGITLSKDGKLLYVCASDSDTIQVIDLATGEV----IGTLP--SGPDPELFALHPNGKILYIANEDDNLVT 98 (300)
T ss_pred EEECCC-CCCceEECCCCCEEEEEECCCCeEEEEECCCCcE----EEecc--CCCCccEEEECCCCCEEEEEcCCCCeEE
Confidence 444444 46789999999876 5677889999999886431 11111 123357789999999876654 579999
Q ss_pred EEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCC-CEEEEECCCccccceEEeeeccCCCCc
Q 048012 222 IYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDG-SLRIWDVNEFKSQKQVIKPKLARPGRV 300 (616)
Q Consensus 222 vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg-~v~iwd~~~~~~~~~~~~~~~~~~~~~ 300 (616)
+||+.+...... +. +...+.+++|+|++ .++++++.++ .+.+||..+......... ..
T Consensus 99 ~~d~~~~~~~~~------------~~-~~~~~~~~~~~~dg-~~l~~~~~~~~~~~~~d~~~~~~~~~~~~-----~~-- 157 (300)
T TIGR03866 99 VIDIETRKVLAE------------IP-VGVEPEGMAVSPDG-KIVVNTSETTNMAHFIDTKTYEIVDNVLV-----DQ-- 157 (300)
T ss_pred EEECCCCeEEeE------------ee-CCCCcceEEECCCC-CEEEEEecCCCeEEEEeCCCCeEEEEEEc-----CC--
Confidence 999986543211 11 12235789999987 4777777665 567789876544332211 11
Q ss_pred cEEEEEECCCCCeEEEE-eCCCcEEEEeCCCCCCCCCceeeecCC-----CC--CeEEEEEcCCCCeEEE-EecCCcEEE
Q 048012 301 AVTTCAWDCDGKCIAGG-IGDGSIQVWNLKPGWGSRPDIHVEKGH-----SD--DITALKFSSDGRILLS-RSFDGSLKV 371 (616)
Q Consensus 301 ~v~~~~~sp~g~~l~~g-~~dg~I~iwd~~~~~~~~~~~~~~~~h-----~~--~V~~l~~spdg~~l~s-~s~Dg~v~l 371 (616)
.+.+++|+++|++|+++ ..++.|++||+.++ ..+..+..+ .. ....++|+|+++++++ .+.++.|.+
T Consensus 158 ~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~----~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v 233 (300)
T TIGR03866 158 RPRFAEFTADGKELWVSSEIGGTVSVIDVATR----KVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAV 233 (300)
T ss_pred CccEEEECCCCCEEEEEcCCCCEEEEEEcCcc----eeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEE
Confidence 35678999999988655 46999999999876 233322211 11 2357899999998655 455778999
Q ss_pred EeCCCCCCcceEecCCCCCCcceeEEECCCCCEEEEeeccccccCCCceEEEEeCCCCceEEEEecCCCCCeEEEEEcC
Q 048012 372 WDLRKMKEPLKVFEDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREKLELVSRVGISPACSVVQCAWHP 450 (616)
Q Consensus 372 wd~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p 450 (616)
||+++... ...+. ....+.+++|+|+|++|+++.. .+|.|++||+.+++++..+... ...+.++++|
T Consensus 234 ~d~~~~~~-~~~~~---~~~~~~~~~~~~~g~~l~~~~~------~~~~i~v~d~~~~~~~~~~~~~--~~~~~~~~~~ 300 (300)
T TIGR03866 234 VDAKTYEV-LDYLL---VGQRVWQLAFTPDEKYLLTTNG------VSNDVSVIDVAALKVIKSIKVG--RLPWGVVVRP 300 (300)
T ss_pred EECCCCcE-EEEEE---eCCCcceEEECCCCCEEEEEcC------CCCeEEEEECCCCcEEEEEEcc--cccceeEeCC
Confidence 99986432 33321 2234889999999999988752 6899999999999999999753 4468887765
No 151
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.87 E-value=1.1e-20 Score=190.66 Aligned_cols=236 Identities=17% Similarity=0.278 Sum_probs=191.4
Q ss_pred EEecCCcccEEE-EEECC-CCCEEEEEEcCCcEEEEeCCCCccccccceecCCCCCCceEEEEecCCCCeEEEEeCCCeE
Q 048012 143 IVLKGHTKIVSA-LAVDH-SGSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSDRFLCVTGSAQA 220 (616)
Q Consensus 143 ~~l~~H~~~V~~-v~~sp-~g~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~s~d~~v 220 (616)
..+.+|.+.|.+ ++|-+ ++-+|++|+.|.+|.+|...+.. ......+|...|.+++...++. +++++.|.++
T Consensus 51 ~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~-----P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~Ta 124 (745)
T KOG0301|consen 51 HAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQAE-----PLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTA 124 (745)
T ss_pred eecccCcceeeccceeccccCcceEeecccceEEEEecCCCC-----chhhhhccccceeeeecCCcCc-eEecccccce
Confidence 467788888888 88875 55579999999999999987643 2234456888899999888887 8999999999
Q ss_pred EEEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEEEECCCccccceEEeeeccCCCCc
Q 048012 221 KIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPGRV 300 (616)
Q Consensus 221 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~ 300 (616)
+||..... ...+.+|...|+++.+-|.+ .++||+.|.+|++|.-. +..+.+ .+|..
T Consensus 125 kvW~~~~l--------------~~~l~gH~asVWAv~~l~e~--~~vTgsaDKtIklWk~~--~~l~tf------~gHtD 180 (745)
T KOG0301|consen 125 KVWRIGEL--------------VYSLQGHTASVWAVASLPEN--TYVTGSADKTIKLWKGG--TLLKTF------SGHTD 180 (745)
T ss_pred EEecchhh--------------hcccCCcchheeeeeecCCC--cEEeccCcceeeeccCC--chhhhh------ccchh
Confidence 99987632 33478999999999999975 89999999999999753 333333 35667
Q ss_pred cEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCCCCCceeeecCCCCCeEEEEEcCCCCeEEEEecCCcEEEEeCCCCCCc
Q 048012 301 AVTTCAWDCDGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHSDDITALKFSSDGRILLSRSFDGSLKVWDLRKMKEP 380 (616)
Q Consensus 301 ~v~~~~~sp~g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~v~lwd~~~~~~~ 380 (616)
.|..+++-+++ .|++++.||.|++|++.. ..+..+.+|+.-|+++....++..+++++.|++++||+.. .+
T Consensus 181 ~VRgL~vl~~~-~flScsNDg~Ir~w~~~g-----e~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~---e~ 251 (745)
T KOG0301|consen 181 CVRGLAVLDDS-HFLSCSNDGSIRLWDLDG-----EVLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD---EC 251 (745)
T ss_pred heeeeEEecCC-CeEeecCCceEEEEeccC-----ceeeeeeccceEEEEEEecCCCCeEEEecCCceEEEeecC---ce
Confidence 89999998765 477888999999999954 5888999999999999988888999999999999999876 45
Q ss_pred ceEecCCCCCCcceeEEECCCCCEEEEeeccccccCCCceEEEEeCC
Q 048012 381 LKVFEDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDRE 427 (616)
Q Consensus 381 ~~~~~~~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~ 427 (616)
.+.+.. +. ..++++.+-++|..++.| .||.|+||...
T Consensus 252 ~q~I~l-Pt-tsiWsa~~L~NgDIvvg~--------SDG~VrVfT~~ 288 (745)
T KOG0301|consen 252 VQVITL-PT-TSIWSAKVLLNGDIVVGG--------SDGRVRVFTVD 288 (745)
T ss_pred EEEEec-Cc-cceEEEEEeeCCCEEEec--------cCceEEEEEec
Confidence 555543 22 238899999898877666 49999999875
No 152
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.87 E-value=1.2e-20 Score=182.44 Aligned_cols=266 Identities=18% Similarity=0.236 Sum_probs=203.9
Q ss_pred CEEEEEEc-CCcEEEEeCCCCccccccceecCCCCCCceEEEEecCCCCeEEEEeCCCeEEEEECCCCeeeeEeeCceeE
Q 048012 162 SRVLSGSY-DYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSDRFLCVTGSAQAKIYDRDGLTLGEFVKGDMYI 240 (616)
Q Consensus 162 ~~lasgs~-Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~s~d~~v~vwd~~~~~~~~~~~~~~~~ 240 (616)
.+++++.. -..|.+|.+....... ......++|.+++-+|+|.+|+.++-.+.+++|.+.++.+
T Consensus 51 ~yllsaq~~rp~l~vw~i~k~~~~~-----q~~v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~L---------- 115 (476)
T KOG0646|consen 51 EYLLSAQLKRPLLHVWEILKKDQVV-----QYIVLPGPVHALASSNLGYFLLAGTISGNLYLWELSSGIL---------- 115 (476)
T ss_pred hheeeecccCccccccccCchhhhh-----hhcccccceeeeecCCCceEEEeecccCcEEEEEeccccH----------
Confidence 45665543 3578999987543222 1222445699999999999999888999999999998876
Q ss_pred eecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEEEECCCcccc---ceEEeeeccCCCCccEEEEEECCC--CCeEE
Q 048012 241 RDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQ---KQVIKPKLARPGRVAVTTCAWDCD--GKCIA 315 (616)
Q Consensus 241 ~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~---~~~~~~~~~~~~~~~v~~~~~sp~--g~~l~ 315 (616)
+..+..|-..|+|+.|+-|+ .+|+||+.||.|++|.+...-.. ...........|.-+|+.+...+. ..+|+
T Consensus 116 --L~v~~aHYQ~ITcL~fs~dg-s~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~ 192 (476)
T KOG0646|consen 116 --LNVLSAHYQSITCLKFSDDG-SHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLY 192 (476)
T ss_pred --HHHHHhhccceeEEEEeCCC-cEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEE
Confidence 55578999999999999988 59999999999999997532111 111122233567778999887664 45899
Q ss_pred EEeCCCcEEEEeCCCCCCCCCceeeecCCCCCeEEEEEcCCCCeEEEEecCCcEEEEeCCCCC---------------Cc
Q 048012 316 GGIGDGSIQVWNLKPGWGSRPDIHVEKGHSDDITALKFSSDGRILLSRSFDGSLKVWDLRKMK---------------EP 380 (616)
Q Consensus 316 ~g~~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~v~lwd~~~~~---------------~~ 380 (616)
+++.|.+|++||+..+ ..+... .....+.+++.+|-++.++.|+.+|.|.+.++.+.. ..
T Consensus 193 TaS~D~t~k~wdlS~g----~LLlti-~fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~ 267 (476)
T KOG0646|consen 193 TASEDRTIKLWDLSLG----VLLLTI-TFPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQ 267 (476)
T ss_pred EecCCceEEEEEeccc----eeeEEE-ecCCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccce
Confidence 9999999999999886 344333 345679999999999999999999999998876432 12
Q ss_pred ceEecCCCCCCcceeEEECCCCCEEEEeeccccccCCCceEEEEeCCCCceEEEEecCCCCCeEEEEEcCCCCcEEEE
Q 048012 381 LKVFEDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREKLELVSRVGISPACSVVQCAWHPKLNQIFAT 458 (616)
Q Consensus 381 ~~~~~~~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~ 458 (616)
+..+.++.....|+|++++-||.+|++|+ .||.++|||+.+.++++++.. ..++|+.+.+.|--..++.+
T Consensus 268 ~~~~~Gh~~~~~ITcLais~DgtlLlSGd-------~dg~VcvWdi~S~Q~iRtl~~-~kgpVtnL~i~~~~~~~~l~ 337 (476)
T KOG0646|consen 268 INVLVGHENESAITCLAISTDGTLLLSGD-------EDGKVCVWDIYSKQCIRTLQT-SKGPVTNLQINPLERGIILF 337 (476)
T ss_pred eeeeccccCCcceeEEEEecCccEEEeeC-------CCCCEEEEecchHHHHHHHhh-hccccceeEeeccccceecc
Confidence 33444555555899999999999999999 999999999999999998863 45789999997764444443
No 153
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.87 E-value=2.1e-19 Score=181.24 Aligned_cols=279 Identities=16% Similarity=0.187 Sum_probs=205.1
Q ss_pred cccEEEEEECCCCCEEEEEEcCCcEEEEeCCCCccccccceecCCCCCCceEEEEecCCCCeEEEEeCCCeEEEEECCCC
Q 048012 149 TKIVSALAVDHSGSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSDRFLCVTGSAQAKIYDRDGL 228 (616)
Q Consensus 149 ~~~V~~v~~sp~g~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~s~d~~v~vwd~~~~ 228 (616)
-..|+||||+.+.+.||.+-.||.|-||++... .-....+.......|.+++|+ ++.+|++.+.+|.|.-||+.+.
T Consensus 25 Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~---w~~~~vi~g~~drsIE~L~W~-e~~RLFS~g~sg~i~EwDl~~l 100 (691)
T KOG2048|consen 25 PSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNN---WFLEPVIHGPEDRSIESLAWA-EGGRLFSSGLSGSITEWDLHTL 100 (691)
T ss_pred ccceEEEEEeccCCceeeeccCCcEEEEccCCC---ceeeEEEecCCCCceeeEEEc-cCCeEEeecCCceEEEEecccC
Confidence 578999999999999999999999999999763 112222333455679999999 5667889999999999998866
Q ss_pred eeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEEEECCCccccceEEeeeccCCCCccEEEEEEC
Q 048012 229 TLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWD 308 (616)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 308 (616)
+. ...+....+.|++++.+|.+ ..++.|+.||.+.++++...+........ .....|.++.|+
T Consensus 101 k~------------~~~~d~~gg~IWsiai~p~~-~~l~IgcddGvl~~~s~~p~~I~~~r~l~----rq~sRvLslsw~ 163 (691)
T KOG2048|consen 101 KQ------------KYNIDSNGGAIWSIAINPEN-TILAIGCDDGVLYDFSIGPDKITYKRSLM----RQKSRVLSLSWN 163 (691)
T ss_pred ce------------eEEecCCCcceeEEEeCCcc-ceEEeecCCceEEEEecCCceEEEEeecc----cccceEEEEEec
Confidence 53 33456677889999999977 58999999998888887654433222221 123479999999
Q ss_pred CCCCeEEEEeCCCcEEEEeCCCCCCCCCceeeecC----CCCCeEEEEEcCCCCeEEEEecCCcEEEEeCCCCCCcceEe
Q 048012 309 CDGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKG----HSDDITALKFSSDGRILLSRSFDGSLKVWDLRKMKEPLKVF 384 (616)
Q Consensus 309 p~g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~----h~~~V~~l~~spdg~~l~s~s~Dg~v~lwd~~~~~~~~~~~ 384 (616)
+++..|++|+.||.|++||..++.........+.. ...-|++|.|-.++ .|++|..-|+|++||...+. .++.+
T Consensus 164 ~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~-tI~sgDS~G~V~FWd~~~gT-LiqS~ 241 (691)
T KOG2048|consen 164 PTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS-TIASGDSAGTVTFWDSIFGT-LIQSH 241 (691)
T ss_pred CCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecC-cEEEecCCceEEEEcccCcc-hhhhh
Confidence 99999999999999999999987311100001111 22347888888655 78999999999999988643 34444
Q ss_pred cCCCCCCcceeEEECCCCCEEEEeeccccccCCCceEEEEeCCCCce--EE-EEecCCCCCeEEEEEcCCCCcEEEEecc
Q 048012 385 EDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREKLEL--VS-RVGISPACSVVQCAWHPKLNQIFATAGD 461 (616)
Q Consensus 385 ~~~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~~~~--~~-~~~~~~~~~v~~~~~~p~~~~l~~~~~d 461 (616)
.. +...|.+++..+++.++++++ .|+.|..|...+... +. .....|...|.+++..++ .|++|+.|
T Consensus 242 ~~--h~adVl~Lav~~~~d~vfsaG-------vd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~--~l~sgG~d 310 (691)
T KOG2048|consen 242 SC--HDADVLALAVADNEDRVFSAG-------VDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIEN--ALISGGRD 310 (691)
T ss_pred hh--hhcceeEEEEcCCCCeEEEcc-------CCCceEEEEecCCccceeeeccccCCcccceeeeeecc--eEEeccee
Confidence 44 345599999999999999999 899998888776643 11 111225566888888876 77777764
No 154
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.86 E-value=8.2e-20 Score=166.21 Aligned_cols=279 Identities=22% Similarity=0.358 Sum_probs=195.0
Q ss_pred CCEEEEEE----cCCcEEEEeCCCCccccccceecCCCCCCceEEEEecCCCCeEEEEeCC--------CeEEEEECCCC
Q 048012 161 GSRVLSGS----YDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSDRFLCVTGS--------AQAKIYDRDGL 228 (616)
Q Consensus 161 g~~lasgs----~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~s~d--------~~v~vwd~~~~ 228 (616)
.-.+++|. .|..|.+-++......+. ......+.+.|+.|+-+|....|++...+ ..+.||.+...
T Consensus 26 ~icFlvgTnslK~dNqVhll~~d~e~s~l~--skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~ 103 (370)
T KOG1007|consen 26 HICFLVGTNSLKEDNQVHLLRLDSEGSELL--SKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEP 103 (370)
T ss_pred ceEEEEeccccCCcceeEEEEecCccchhh--hhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccc
Confidence 33455554 367788887776543332 22334566679999999977766554332 35788987633
Q ss_pred eeeeEeeCceeEeecccCC-CcccceEEEEEcCCCCCEEEEEeCCCCEEEEECCCccccceEEeeeccCCCCccEEEEEE
Q 048012 229 TLGEFVKGDMYIRDLKNTK-GHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAW 307 (616)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 307 (616)
.-. .....+..+..+. .+.+.|.|+.|.|++. .+++-. |..|.+|++.....+...........++...++-+|
T Consensus 104 ~~~---S~~~tlE~v~~Ldteavg~i~cvew~Pns~-klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~W 178 (370)
T KOG1007|consen 104 LGQ---SNSSTLECVASLDTEAVGKINCVEWEPNSD-KLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAW 178 (370)
T ss_pred cCc---cccchhhHhhcCCHHHhCceeeEEEcCCCC-eeEEec-cCceEEEEcccCcchheeecccccccccceeccccc
Confidence 211 0001112233333 5666899999999774 555554 889999999987764333333333345667889999
Q ss_pred CC--CCCeEEEEeCCCcEEEEeCCCCCCCCCceeeecCCCCCeEEEEEcCCCC-eEEEEecCCcEEEEeCCCCCCcceEe
Q 048012 308 DC--DGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHSDDITALKFSSDGR-ILLSRSFDGSLKVWDLRKMKEPLKVF 384 (616)
Q Consensus 308 sp--~g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~-~l~s~s~Dg~v~lwd~~~~~~~~~~~ 384 (616)
+| +|+.+++.+ |++++.||+++. .+...+..+|...|..+.|+|+-+ +|++|+.||.|+|||+|+.+.+++.+
T Consensus 179 spHHdgnqv~tt~-d~tl~~~D~RT~---~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el 254 (370)
T KOG1007|consen 179 SPHHDGNQVATTS-DSTLQFWDLRTM---KKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQEL 254 (370)
T ss_pred CCCCccceEEEeC-CCcEEEEEccch---hhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCcccccc
Confidence 98 677777664 899999999974 466677789999999999999765 68899999999999999999898888
Q ss_pred cCCCCCCcceeEEECCC-CCEEEEeeccccccCCCceEEEEeCCCCc-----------------------------eEEE
Q 048012 385 EDLPNNYAQTNVAFSPD-EQLFLTGTSVERESTTGGLLCFYDREKLE-----------------------------LVSR 434 (616)
Q Consensus 385 ~~~~~~~~v~~v~fspd-g~~l~~gs~~~~~~~~dg~i~iwd~~~~~-----------------------------~~~~ 434 (616)
..|. .+|.+|.|+|. .++|++|+ .|..|.+|....-. .+.+
T Consensus 255 ~~Hs--HWvW~VRfn~~hdqLiLs~~-------SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~t 325 (370)
T KOG1007|consen 255 PGHS--HWVWAVRFNPEHDQLILSGG-------SDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLET 325 (370)
T ss_pred CCCc--eEEEEEEecCccceEEEecC-------CCceeEEEeccccccccccccccccccCcchhhHHhccccccccccc
Confidence 7655 55999999996 66778888 78888888753221 1122
Q ss_pred EecCCCCCeEEEEEcCCCCcEEEEec
Q 048012 435 VGISPACSVVQCAWHPKLNQIFATAG 460 (616)
Q Consensus 435 ~~~~~~~~v~~~~~~p~~~~l~~~~~ 460 (616)
+. .|...|.+++|+....+||++-+
T Consensus 326 yd-ehEDSVY~~aWSsadPWiFASLS 350 (370)
T KOG1007|consen 326 YD-EHEDSVYALAWSSADPWIFASLS 350 (370)
T ss_pred cc-ccccceEEEeeccCCCeeEEEec
Confidence 22 35677889999988888888765
No 155
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.86 E-value=7.9e-20 Score=175.78 Aligned_cols=253 Identities=15% Similarity=0.228 Sum_probs=178.6
Q ss_pred eEEEEecC-------CCCeEEEEeCCCeEEEEECCCCe--eeeEeeCce---eE----eecccCCCcccceEEEEEcCCC
Q 048012 199 VRNLSWSP-------TSDRFLCVTGSAQAKIYDRDGLT--LGEFVKGDM---YI----RDLKNTKGHICGLTCGEWHPKT 262 (616)
Q Consensus 199 v~~l~~sp-------~g~~l~~~s~d~~v~vwd~~~~~--~~~~~~~~~---~~----~~~~~~~~h~~~v~~~~~~p~~ 262 (616)
..|+.|.. .|+++++|+.+..|.|||++-.. +..+.-|.. .. +.-....+|+..|..+.|+-.-
T Consensus 176 PLC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~ 255 (463)
T KOG0270|consen 176 PLCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNF 255 (463)
T ss_pred chhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhcccc
Confidence 45666643 36899999999999999987321 111111100 00 0111235799999999999888
Q ss_pred CCEEEEEeCCCCEEEEECCCccccceEEeeeccCCCCccEEEEEECCC-CCeEEEEeCCCcEEEEeCCCCCCCCCceeee
Q 048012 263 KETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWDCD-GKCIAGGIGDGSIQVWNLKPGWGSRPDIHVE 341 (616)
Q Consensus 263 ~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~-g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~ 341 (616)
.++|++||.|.+|++||+.++++...+. .|...|.++.|+|. ..+|++|+.|++|.|+|+|... .....
T Consensus 256 ~nVLaSgsaD~TV~lWD~~~g~p~~s~~------~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~----~s~~~ 325 (463)
T KOG0270|consen 256 RNVLASGSADKTVKLWDVDTGKPKSSIT------HHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPS----NSGKE 325 (463)
T ss_pred ceeEEecCCCceEEEEEcCCCCcceehh------hcCCceeEEEecCCCceEEEeccccceEEeeeccCcc----ccCce
Confidence 8999999999999999999988766553 23347999999984 6789999999999999999531 22222
Q ss_pred cCCCCCeEEEEEcCC-CCeEEEEecCCcEEEEeCCCCCCcceEecCCCCCCcceeEEECCCCC-EEEEeeccccccCCCc
Q 048012 342 KGHSDDITALKFSSD-GRILLSRSFDGSLKVWDLRKMKEPLKVFEDLPNNYAQTNVAFSPDEQ-LFLTGTSVERESTTGG 419 (616)
Q Consensus 342 ~~h~~~V~~l~~spd-g~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~v~~v~fspdg~-~l~~gs~~~~~~~~dg 419 (616)
-...+.|-.++|.|. ...++++..||+|+-+|+|+.+.++..+..|. ..|++++++..-. +|++++ .++
T Consensus 326 wk~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd--~~ISgl~~n~~~p~~l~t~s-------~d~ 396 (463)
T KOG0270|consen 326 WKFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHD--DEISGLSVNIQTPGLLSTAS-------TDK 396 (463)
T ss_pred EEeccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEecc--CCcceEEecCCCCcceeecc-------ccc
Confidence 223467999999994 45777888999999999999988888887754 4699999998755 566666 899
Q ss_pred eEEEEeCCCCce--EEEEecCCCCCeEEEEEcCCCCcEEEEeccCCCCceEEEeccc
Q 048012 420 LLCFYDREKLEL--VSRVGISPACSVVQCAWHPKLNQIFATAGDKSQGGTHILYDPR 474 (616)
Q Consensus 420 ~i~iwd~~~~~~--~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~~~~~~~v~~~~ 474 (616)
.|++|++..-.. +..-.+ ..+...|.++.|+...+++.++. ....+||++.
T Consensus 397 ~Vklw~~~~~~~~~v~~~~~-~~~rl~c~~~~~~~a~~la~GG~---k~~~~vwd~~ 449 (463)
T KOG0270|consen 397 VVKLWKFDVDSPKSVKEHSF-KLGRLHCFALDPDVAFTLAFGGE---KAVLRVWDIF 449 (463)
T ss_pred eEEEEeecCCCCcccccccc-cccceeecccCCCcceEEEecCc---cceEEEeecc
Confidence 999999764433 222111 11335566677776665555542 3356666654
No 156
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.85 E-value=1.1e-19 Score=182.09 Aligned_cols=278 Identities=17% Similarity=0.292 Sum_probs=212.5
Q ss_pred cEEEEEECCCCCEEEEEEcCCcEEEEeCCCCccccccceecCCCCCCceEEEEecCCCCeEEEEeCCCeEEEEECCCCee
Q 048012 151 IVSALAVDHSGSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSDRFLCVTGSAQAKIYDRDGLTL 230 (616)
Q Consensus 151 ~V~~v~~sp~g~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~s~d~~v~vwd~~~~~~ 230 (616)
.|+.++|-|||..|+.+. +..+.|||.+.+. .......|...|++++|+.+|.++++|+.|..|.||+-.-.-+
T Consensus 14 ci~d~afkPDGsqL~lAA-g~rlliyD~ndG~-----llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~ 87 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAA-GSRLLVYDTSDGT-----LLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGI 87 (1081)
T ss_pred chheeEECCCCceEEEec-CCEEEEEeCCCcc-----cccccccccceEEEEEEccCCceeccCCCceeEEEecccccce
Confidence 899999999999887765 4569999998763 2333446888899999999999999999999999998653222
Q ss_pred eeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEEEECCCccccceEEeeeccCCCCccEEEEEECCC
Q 048012 231 GEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWDCD 310 (616)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~ 310 (616)
. ...|...|.|+.|+|-. +.|++|+.. ..-+|.......++. .....|.+|+|..|
T Consensus 88 L--------------kYSH~D~IQCMsFNP~~-h~LasCsLs-dFglWS~~qK~V~K~--------kss~R~~~CsWtnD 143 (1081)
T KOG1538|consen 88 L--------------KYSHNDAIQCMSFNPIT-HQLASCSLS-DFGLWSPEQKSVSKH--------KSSSRIICCSWTND 143 (1081)
T ss_pred e--------------eeccCCeeeEeecCchH-HHhhhcchh-hccccChhhhhHHhh--------hhheeEEEeeecCC
Confidence 1 24799999999999976 688888864 367888764332221 12227899999999
Q ss_pred CCeEEEEeCCCcEEEEeCCCCCCCCCceeeecCCCCCeEEEEEcCCC-----CeEEEEecCCcEEEEeCCCCCCcceEec
Q 048012 311 GKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHSDDITALKFSSDG-----RILLSRSFDGSLKVWDLRKMKEPLKVFE 385 (616)
Q Consensus 311 g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~spdg-----~~l~s~s~Dg~v~lwd~~~~~~~~~~~~ 385 (616)
|.+|+.|-.+|+|.|-+-... ....+..-.+..++|++|+|+|.. ..+++.....++.+|.+.. +. +-.
T Consensus 144 GqylalG~~nGTIsiRNk~gE--ek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG-~~---Igk 217 (1081)
T KOG1538|consen 144 GQYLALGMFNGTISIRNKNGE--EKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSG-KQ---IGK 217 (1081)
T ss_pred CcEEEEeccCceEEeecCCCC--cceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecc-ee---ecc
Confidence 999999999999999865432 222333334567889999999943 4788888888999998863 21 111
Q ss_pred CCCCCCcceeEEECCCCCEEEEeeccccccCCCceEEEEeCCCCceEEEEecCCCCCeEEEEEcCCCCcEEEEeccCCCC
Q 048012 386 DLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREKLELVSRVGISPACSVVQCAWHPKLNQIFATAGDKSQG 465 (616)
Q Consensus 386 ~~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~~~ 465 (616)
...-.....|+.+.++|.|++.|+ .++.+.+|-. .|-.+-++.- .+..|+.++.+|+++.++.||- +
T Consensus 218 ~r~L~FdP~CisYf~NGEy~LiGG-------sdk~L~~fTR-~GvrLGTvg~-~D~WIWtV~~~PNsQ~v~~GCq----D 284 (1081)
T KOG1538|consen 218 DRALNFDPCCISYFTNGEYILLGG-------SDKQLSLFTR-DGVRLGTVGE-QDSWIWTVQAKPNSQYVVVGCQ----D 284 (1081)
T ss_pred cccCCCCchhheeccCCcEEEEcc-------CCCceEEEee-cCeEEeeccc-cceeEEEEEEccCCceEEEEEc----c
Confidence 222334578899999999999999 7999999974 4555566643 5678999999999999999998 7
Q ss_pred ceEEEecccCCC
Q 048012 466 GTHILYDPRLSE 477 (616)
Q Consensus 466 ~~~~v~~~~~s~ 477 (616)
+++..|++.||.
T Consensus 285 GTiACyNl~fST 296 (1081)
T KOG1538|consen 285 GTIACYNLIFST 296 (1081)
T ss_pred CeeehhhhHHhH
Confidence 888889888774
No 157
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.85 E-value=4.1e-20 Score=184.84 Aligned_cols=270 Identities=16% Similarity=0.172 Sum_probs=188.3
Q ss_pred ecCCcccEEEEEECCCCCEEEEEEcCCcEEEEeCCCCccccccceecCCCCCCceEEEEecCCCC-eEEEEeCCCeEEEE
Q 048012 145 LKGHTKIVSALAVDHSGSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSD-RFLCVTGSAQAKIY 223 (616)
Q Consensus 145 l~~H~~~V~~v~~sp~g~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~-~l~~~s~d~~v~vw 223 (616)
...|..+|..+.|-|...+|++++.|.++++||+.... +.... +..+|...|.+++|.+... .|++|+.||.|.||
T Consensus 96 ~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~--l~G~~-~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illW 172 (720)
T KOG0321|consen 96 PLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSR--LVGGR-LNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLW 172 (720)
T ss_pred cccccceeEeeccCCCceeEEEccCCceeeeeeeccce--eecce-eecccccccchhhhccCCCcceeeccCCCcEEEE
Confidence 45799999999999966799999999999999998643 11222 4567888999999999765 57788999999999
Q ss_pred ECCCCeeeeE----------eeC-----ceeEeecccCCCcccceEE---EEEcCCCCCEEEEEeC-CCCEEEEECCCcc
Q 048012 224 DRDGLTLGEF----------VKG-----DMYIRDLKNTKGHICGLTC---GEWHPKTKETILTSSE-DGSLRIWDVNEFK 284 (616)
Q Consensus 224 d~~~~~~~~~----------~~~-----~~~~~~~~~~~~h~~~v~~---~~~~p~~~~~l~s~s~-Dg~v~iwd~~~~~ 284 (616)
|+.-..+..+ .++ ....+.....+.|...|.. +.+..|. ..|++++. |+.|+|||++...
T Consensus 173 D~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe-~tlaSaga~D~~iKVWDLRk~~ 251 (720)
T KOG0321|consen 173 DCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDE-STLASAGAADSTIKVWDLRKNY 251 (720)
T ss_pred EEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEecc-ceeeeccCCCcceEEEeecccc
Confidence 9763321111 001 0001112223344444444 4444444 58888887 9999999998754
Q ss_pred ccceEEee-----eccCCCCccEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCCCCCceeeecCCCCC--eEEEEEcCCC
Q 048012 285 SQKQVIKP-----KLARPGRVAVTTCAWDCDGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHSDD--ITALKFSSDG 357 (616)
Q Consensus 285 ~~~~~~~~-----~~~~~~~~~v~~~~~sp~g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~h~~~--V~~l~~spdg 357 (616)
........ .........++++.....|.+|++.+.|++|++|++.+. ....+..+.+|... -..-..+||+
T Consensus 252 ~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~--s~sP~~~~sg~~~~sf~vks~lSpd~ 329 (720)
T KOG0321|consen 252 TAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSL--SISPVAEFSGKLNSSFYVKSELSPDD 329 (720)
T ss_pred cccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEecccc--CcCchhhccCcccceeeeeeecCCCC
Confidence 33221110 011111336888999999999999999999999999875 33444455554322 1122358999
Q ss_pred CeEEEEecCCcEEEEeCCCCCCcceEecCCCCCCcceeEEECCCC-CEEEEeeccccccCCCceEEEEeCCCC
Q 048012 358 RILLSRSFDGSLKVWDLRKMKEPLKVFEDLPNNYAQTNVAFSPDE-QLFLTGTSVERESTTGGLLCFYDREKL 429 (616)
Q Consensus 358 ~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~v~~v~fspdg-~~l~~gs~~~~~~~~dg~i~iwd~~~~ 429 (616)
.+|++|+.|...++|.+.+...+...+.++. ..|++++|.|.. .-+++++ .|..++||++..+
T Consensus 330 ~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght--~eVt~V~w~pS~~t~v~TcS-------dD~~~kiW~l~~~ 393 (720)
T KOG0321|consen 330 CSLLSGSSDEQAYIWVVSSPEAPPALLLGHT--REVTTVRWLPSATTPVATCS-------DDFRVKIWRLSNG 393 (720)
T ss_pred ceEeccCCCcceeeeeecCccCChhhhhCcc--eEEEEEeeccccCCCceeec-------cCcceEEEeccCc
Confidence 9999999999999999998887777776654 449999998742 3455667 8999999998655
No 158
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.85 E-value=2.2e-19 Score=169.49 Aligned_cols=303 Identities=12% Similarity=0.113 Sum_probs=211.5
Q ss_pred EecCCcccEEEEEECCCCCEEEEEEcCCcEEEEeCCCCcc--ccccceecCCCCCCceEEEEecCCCCeEEEEeCCCeEE
Q 048012 144 VLKGHTKIVSALAVDHSGSRVLSGSYDYTVRMYDFQGMNS--RLQSFRQLEPSEGHQVRNLSWSPTSDRFLCVTGSAQAK 221 (616)
Q Consensus 144 ~l~~H~~~V~~v~~sp~g~~lasgs~Dg~i~iwd~~~~~~--~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~s~d~~v~ 221 (616)
-+.+|.+.|++|.|+.++++||+|+.|..++||++..... ..+.+......|...|.||+|....+.|++|..+++|.
T Consensus 51 D~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI 130 (609)
T KOG4227|consen 51 DVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVI 130 (609)
T ss_pred hhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcceeE
Confidence 4679999999999999999999999999999999864221 11334444455667899999999999999999999999
Q ss_pred EEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEEEECCCccccceEEeeeccCCCCcc
Q 048012 222 IYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPGRVA 301 (616)
Q Consensus 222 vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~ 301 (616)
+.|+.+.+.. .+.......+.|..+..+|.. ++|++.+.++.|.+||++..........+... ...
T Consensus 131 ~HDiEt~qsi----------~V~~~~~~~~~VY~m~~~P~D-N~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~---~~~ 196 (609)
T KOG4227|consen 131 KHDIETKQSI----------YVANENNNRGDVYHMDQHPTD-NTLIVVTRAKLVSFIDNRDRQNPISLVLPANS---GKN 196 (609)
T ss_pred eeecccceee----------eeecccCcccceeecccCCCC-ceEEEEecCceEEEEeccCCCCCCceeeecCC---Ccc
Confidence 9999976532 122334455689999999975 79999999999999999876544333333221 125
Q ss_pred EEEEEECCC-CCeEEEEeCCCcEEEEeCCCCCCCCCcee-----eecCCCCCeEEEEEcCCCCeEEEEecCCcEEEEeCC
Q 048012 302 VTTCAWDCD-GKCIAGGIGDGSIQVWNLKPGWGSRPDIH-----VEKGHSDDITALKFSSDGRILLSRSFDGSLKVWDLR 375 (616)
Q Consensus 302 v~~~~~sp~-g~~l~~g~~dg~I~iwd~~~~~~~~~~~~-----~~~~h~~~V~~l~~spdg~~l~s~s~Dg~v~lwd~~ 375 (616)
..++.|+|. ..+|++.+..+-+-+||++.. ..+++. .+......-.++.|+|.|+.|++.-....-.+||+.
T Consensus 197 F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~--~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~ 274 (609)
T KOG4227|consen 197 FYTAEFHPETPALILVNSETGGPNVFDRRMQ--ARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFI 274 (609)
T ss_pred ceeeeecCCCceeEEeccccCCCCceeeccc--cchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeee
Confidence 778889995 568889999999999999875 222221 111112234678999999999887766677789988
Q ss_pred CCCCcceEecCCCC----CCcceeEEECCCCCEEEEeeccccccCCCceEEEEeCCCCc---------------------
Q 048012 376 KMKEPLKVFEDLPN----NYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREKLE--------------------- 430 (616)
Q Consensus 376 ~~~~~~~~~~~~~~----~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~~~--------------------- 430 (616)
+...++..+...+. ...+.+++|--|-. +++|+ .+=.|++|.+....
T Consensus 275 S~R~~V~k~D~N~~GY~N~~T~KS~~F~~D~~-v~tGS-------D~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i 346 (609)
T KOG4227|consen 275 SQRCFVLKSDHNPNGYCNIKTIKSMTFIDDYT-VATGS-------DHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFI 346 (609)
T ss_pred cccceeEeccCCCCcceeeeeeeeeeeeccee-eeccC-------cccceEEEecCCCccccCccccCcchhhCchhhee
Confidence 75555544432221 22356778876544 88888 78889999874321
Q ss_pred --eEEEEecCCCCCeEEEEEcCCCCcEEEEeccCCCCceEEEecccC
Q 048012 431 --LVSRVGISPACSVVQCAWHPKLNQIFATAGDKSQGGTHILYDPRL 475 (616)
Q Consensus 431 --~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~~~~~~~v~~~~~ 475 (616)
.+..+. .|.+-++.+.|+|..+.|++++- ...+.||+...
T Consensus 347 ~~~~~VLr-GHRSv~NQVRF~~H~~~l~SSGV----E~~~KlWS~~r 388 (609)
T KOG4227|consen 347 EKELTVLR-GHRSVPNQVRFSQHNNLLVSSGV----ENSFKLWSDHR 388 (609)
T ss_pred cceeEEEe-cccccccceeecCCcceEeccch----hhheecccccc
Confidence 111122 35556677777777555554443 55666776543
No 159
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.85 E-value=1.3e-19 Score=166.74 Aligned_cols=242 Identities=15% Similarity=0.244 Sum_probs=173.8
Q ss_pred eEEEEecCCCCeEEEEeCCCeEEEEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEEE
Q 048012 199 VRNLSWSPTSDRFLCVTGSAQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIW 278 (616)
Q Consensus 199 v~~l~~sp~g~~l~~~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iw 278 (616)
..|+.|++.|.+|++|+.+|.|.|||+.+..+ .+.+.+|..+|.+++|+++| +.|+|+|.|..|.+|
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~i------------ar~lsaH~~pi~sl~WS~dg-r~LltsS~D~si~lw 92 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRI------------ARMLSAHVRPITSLCWSRDG-RKLLTSSRDWSIKLW 92 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccch------------hhhhhccccceeEEEecCCC-CEeeeecCCceeEEE
Confidence 78999999999999999999999999997764 34478999999999999988 699999999999999
Q ss_pred ECCCccccceEEeeeccCCCCccEEEEEECCCCC-eEEEEeCCCcEEEEeCCCCCCCCCceeeec-C-CCCCeEEEEEcC
Q 048012 279 DVNEFKSQKQVIKPKLARPGRVAVTTCAWDCDGK-CIAGGIGDGSIQVWNLKPGWGSRPDIHVEK-G-HSDDITALKFSS 355 (616)
Q Consensus 279 d~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~-~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~-~-h~~~V~~l~~sp 355 (616)
|+..+...+.+.... +|+.+.|+|... .+++.-.+..-.+-++..+ ....+..-. + -...-.+..|.+
T Consensus 93 Dl~~gs~l~rirf~s-------pv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~--~h~~Lp~d~d~dln~sas~~~fdr 163 (405)
T KOG1273|consen 93 DLLKGSPLKRIRFDS-------PVWGAQWHPRKRNKCVATIMEESPVVIDFSDP--KHSVLPKDDDGDLNSSASHGVFDR 163 (405)
T ss_pred eccCCCceeEEEccC-------ccceeeeccccCCeEEEEEecCCcEEEEecCC--ceeeccCCCccccccccccccccC
Confidence 999988766654322 799999999543 3333333444455555432 111111110 0 011123346889
Q ss_pred CCCeEEEEecCCcEEEEeCCCCCCcceEecCCCCCCcceeEEECCCCCEEEEeeccccccCCCceEEEEeCCCCceE---
Q 048012 356 DGRILLSRSFDGSLKVWDLRKMKEPLKVFEDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREKLELV--- 432 (616)
Q Consensus 356 dg~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~~~~~--- 432 (616)
.|+++++|...|.+.++|..+.+ ++..+.-.. ...|.++.|+..|++|++-+ .|..|+.|+++.....
T Consensus 164 ~g~yIitGtsKGkllv~~a~t~e-~vas~rits-~~~IK~I~~s~~g~~liiNt-------sDRvIR~ye~~di~~~~r~ 234 (405)
T KOG1273|consen 164 RGKYIITGTSKGKLLVYDAETLE-CVASFRITS-VQAIKQIIVSRKGRFLIINT-------SDRVIRTYEISDIDDEGRD 234 (405)
T ss_pred CCCEEEEecCcceEEEEecchhe-eeeeeeech-heeeeEEEEeccCcEEEEec-------CCceEEEEehhhhcccCcc
Confidence 99999999999999999998753 344443222 24488899999999999999 8999999997632111
Q ss_pred ------EEEe-cCCCCCeEEEEEcCCCCcEEEEeccCCCCceEEEeccc
Q 048012 433 ------SRVG-ISPACSVVQCAWHPKLNQIFATAGDKSQGGTHILYDPR 474 (616)
Q Consensus 433 ------~~~~-~~~~~~v~~~~~~p~~~~l~~~~~d~~~~~~~~v~~~~ 474 (616)
+++. +-....-.+|.|+.+|.++++++.. .|.+.||.-.
T Consensus 235 ~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~---aHaLYIWE~~ 280 (405)
T KOG1273|consen 235 GEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSAR---AHALYIWEKS 280 (405)
T ss_pred CCcChhHHHHHHHhhhhhhheeecCCccEEEecccc---ceeEEEEecC
Confidence 1110 0011234678899999999999864 8888888743
No 160
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.84 E-value=3.1e-19 Score=169.87 Aligned_cols=300 Identities=17% Similarity=0.231 Sum_probs=204.9
Q ss_pred EEecCCcccEEEEEECCCCC-EEEEEEcCCcEEEEeCCCCccc----cccceecCCCCCCceEEEEecCCCCeEEEEeCC
Q 048012 143 IVLKGHTKIVSALAVDHSGS-RVLSGSYDYTVRMYDFQGMNSR----LQSFRQLEPSEGHQVRNLSWSPTSDRFLCVTGS 217 (616)
Q Consensus 143 ~~l~~H~~~V~~v~~sp~g~-~lasgs~Dg~i~iwd~~~~~~~----~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~s~d 217 (616)
+... ...+|..+.|.++.. +||||+.|..||||.+...... ...+......|...|+++.|+|+|+.|++|+.+
T Consensus 8 i~wH-~~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~ 86 (434)
T KOG1009|consen 8 ISWH-DHEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDG 86 (434)
T ss_pred EEec-CCCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCC
Confidence 3443 356899999998876 9999999999999988643221 223445556788889999999999999999999
Q ss_pred CeEEEEECCCCeee----eEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEEEECCCccccceEEeee
Q 048012 218 AQAKIYDRDGLTLG----EFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKPK 293 (616)
Q Consensus 218 ~~v~vwd~~~~~~~----~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~ 293 (616)
+.|.+|-....... +...........+.+.+|...|..++|+|++ +++++++.|.++++||+..+......
T Consensus 87 g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~-~~l~s~s~dns~~l~Dv~~G~l~~~~---- 161 (434)
T KOG1009|consen 87 GEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDS-NFLVSGSVDNSVRLWDVHAGQLLAIL---- 161 (434)
T ss_pred ceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCC-ceeeeeeccceEEEEEeccceeEeec----
Confidence 99999987631110 0000011112244567899999999999987 69999999999999999987654433
Q ss_pred ccCCCCccEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCCCCCcee--ee--------------cCCC----CCeEEEEE
Q 048012 294 LARPGRVAVTTCAWDCDGKCIAGGIGDGSIQVWNLKPGWGSRPDIH--VE--------------KGHS----DDITALKF 353 (616)
Q Consensus 294 ~~~~~~~~v~~~~~sp~g~~l~~g~~dg~I~iwd~~~~~~~~~~~~--~~--------------~~h~----~~V~~l~~ 353 (616)
..|...|..++|.|-++++++-+.|...+.+.+.... ....+. .+ .-|. .-...++|
T Consensus 162 --~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~-~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsf 238 (434)
T KOG1009|consen 162 --DDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQ-VIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSF 238 (434)
T ss_pred --cccccccceeecchhhhhhhhhccCcccceeeeeeee-eeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhccc
Confidence 2455589999999999999999988877777655321 000000 00 0111 12456889
Q ss_pred cCCCCeEEEEec----CC-----cEEEEeCCCCCCcceEecCCCCCCcceeEEEC------------------CCCCEEE
Q 048012 354 SSDGRILLSRSF----DG-----SLKVWDLRKMKEPLKVFEDLPNNYAQTNVAFS------------------PDEQLFL 406 (616)
Q Consensus 354 spdg~~l~s~s~----Dg-----~v~lwd~~~~~~~~~~~~~~~~~~~v~~v~fs------------------pdg~~l~ 406 (616)
+|+|.+|++.+. .+ +.++|+-...++|...+.... ..+..+.|+ |.+-.++
T Consensus 239 TPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~--k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfa 316 (434)
T KOG1009|consen 239 TPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPK--KPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFA 316 (434)
T ss_pred CCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecCCCC--cceEEEEeeeeEEEeccccccccccccccceEEE
Confidence 999999987542 22 346666555555544443321 113333333 2333455
Q ss_pred EeeccccccCCCceEEEEeCCCCceEEEEecCCCCCeEEEEEcCCCCcEEEEecc
Q 048012 407 TGTSVERESTTGGLLCFYDREKLELVSRVGISPACSVVQCAWHPKLNQIFATAGD 461 (616)
Q Consensus 407 ~gs~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d 461 (616)
+++ ...|+|||.++..++..+..-|-..|+.++|++++..|+.++.|
T Consensus 317 iAt--------~~svyvydtq~~~P~~~v~nihy~~iTDiaws~dg~~l~vSS~D 363 (434)
T KOG1009|consen 317 IAT--------KNSVYVYDTQTLEPLAVVDNIHYSAITDIAWSDDGSVLLVSSTD 363 (434)
T ss_pred Eee--------cceEEEeccccccceEEEeeeeeeeecceeecCCCcEEEEeccC
Confidence 554 67899999999888877765566778888888888888888775
No 161
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.84 E-value=1.2e-19 Score=169.19 Aligned_cols=273 Identities=16% Similarity=0.247 Sum_probs=189.5
Q ss_pred CeEEEEeCCCeEEEEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCC-CCCEEEEEeCCCCEEEEECCCccccc
Q 048012 209 DRFLCVTGSAQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPK-TKETILTSSEDGSLRIWDVNEFKSQK 287 (616)
Q Consensus 209 ~~l~~~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~-~~~~l~s~s~Dg~v~iwd~~~~~~~~ 287 (616)
..++++..+|.|++||..+..+ +..++++...++.+.|... +.+.+.+|+.||+||+||++......
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~------------l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a 108 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQL------------LEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESA 108 (376)
T ss_pred eeEEEEecCCeEEEEeccchhh------------hheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhh
Confidence 4678888999999999987653 4456788888888888764 66899999999999999999866554
Q ss_pred eEEeeeccCCCCccEEEEEECCCCCeEEEEeC----CCcEEEEeCCCCCCCCCceeeecCCCCCeEEEEEcC-CCCeEEE
Q 048012 288 QVIKPKLARPGRVAVTTCAWDCDGKCIAGGIG----DGSIQVWNLKPGWGSRPDIHVEKGHSDDITALKFSS-DGRILLS 362 (616)
Q Consensus 288 ~~~~~~~~~~~~~~v~~~~~sp~g~~l~~g~~----dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp-dg~~l~s 362 (616)
.+...... ..+..|++.+.+++++++|+. +-.|.+||+|.. ..........|...|++|.|+| +.++|+|
T Consensus 109 ~~~~~~~~---~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~--qq~l~~~~eSH~DDVT~lrFHP~~pnlLlS 183 (376)
T KOG1188|consen 109 RISWTQQS---GTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSE--QQLLRQLNESHNDDVTQLRFHPSDPNLLLS 183 (376)
T ss_pred heeccCCC---CCcceEeeccCcCCeEEeccccccCceEEEEEEeccc--cchhhhhhhhccCcceeEEecCCCCCeEEe
Confidence 44322211 236788888888999999864 678999999985 2234456678999999999999 6789999
Q ss_pred EecCCcEEEEeCCCCCCcceEecCCCCCCcceeEEECCCC-CEEEEeeccccccCCCceEEEEeCCCCceEEEEecCC--
Q 048012 363 RSFDGSLKVWDLRKMKEPLKVFEDLPNNYAQTNVAFSPDE-QLFLTGTSVERESTTGGLLCFYDREKLELVSRVGISP-- 439 (616)
Q Consensus 363 ~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~v~~v~fspdg-~~l~~gs~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~-- 439 (616)
||.||.|.|||+.....--..+....+...|.++.|..++ +.|.+-+ ..+...+|+++.+.....+..+.
T Consensus 184 GSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clT-------H~Etf~~~ele~~~~~~~~~~~~~~ 256 (376)
T KOG1188|consen 184 GSVDGLVNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLT-------HMETFAIYELEDGSEETWLENPDVS 256 (376)
T ss_pred ecccceEEeeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEE-------ccCceeEEEccCCChhhcccCccch
Confidence 9999999999998643322222223345568999999887 3455556 68899999999887655443210
Q ss_pred ---------CCCeEEEEEcCCCCcEEEEeccC----------------------CC-CceEEEecccCCCCCcEEEEecC
Q 048012 440 ---------ACSVVQCAWHPKLNQIFATAGDK----------------------SQ-GGTHILYDPRLSERGALVCVARA 487 (616)
Q Consensus 440 ---------~~~v~~~~~~p~~~~l~~~~~d~----------------------~~-~~~~~v~~~~~s~~g~~l~s~~~ 487 (616)
...++.+...-+....+.++.+. +. ++.-.|.++-|-..+.+|.+|+.
T Consensus 257 ~~d~r~~~~~dY~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGE 336 (376)
T KOG1188|consen 257 ADDLRKEDNCDYVINEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGE 336 (376)
T ss_pred hhhHHhhhhhhheeecccCCCcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccceeeccCC
Confidence 01122222223333333333321 11 23444455556667889999999
Q ss_pred Ccceecccc-cCCceeeCC
Q 048012 488 PRKKSVDDF-EVAPVIHNP 505 (616)
Q Consensus 488 d~~~~~wd~-~~~~~~~~p 505 (616)
|+.+.+|.. ...+..|+-
T Consensus 337 DG~l~~Wk~~da~e~~~s~ 355 (376)
T KOG1188|consen 337 DGLLQAWKVEDATEINFSW 355 (376)
T ss_pred CceEEEEecCCcccccccc
Confidence 999999985 333444544
No 162
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.84 E-value=5.6e-19 Score=168.17 Aligned_cols=297 Identities=16% Similarity=0.269 Sum_probs=204.3
Q ss_pred CCceEEEEecCCCC-eEEEEeCCCeEEEEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCC
Q 048012 196 GHQVRNLSWSPTSD-RFLCVTGSAQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGS 274 (616)
Q Consensus 196 ~~~v~~l~~sp~g~-~l~~~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~ 274 (616)
..+|.++.|..+.. .|+++++|..|+||-++...- ..+++.+..+..+..|...|+++.|+|++ ++|++|+.+|.
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~---~~~~~~V~y~s~Ls~H~~aVN~vRf~p~g-elLASg~D~g~ 88 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEP---GGGDMKVEYLSSLSRHTRAVNVVRFSPDG-ELLASGGDGGE 88 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCC---CCCceeEEEeecccCCcceeEEEEEcCCc-CeeeecCCCce
Confidence 44699999998876 899999999999999774432 12224556677889999999999999988 69999999999
Q ss_pred EEEEECCCccc----------cceEEeeeccCCCCccEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCCCCCceeeecCC
Q 048012 275 LRIWDVNEFKS----------QKQVIKPKLARPGRVAVTTCAWDCDGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGH 344 (616)
Q Consensus 275 v~iwd~~~~~~----------~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~h 344 (616)
|.+|-...... ...........+|+..|..++|+++++++++|+.|.++++||+..+ .....+..|
T Consensus 89 v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G----~l~~~~~dh 164 (434)
T KOG1009|consen 89 VFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAG----QLLAILDDH 164 (434)
T ss_pred EEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccc----eeEeecccc
Confidence 99998652100 1112222333467778999999999999999999999999999987 788899999
Q ss_pred CCCeEEEEEcCCCCeEEEEecCCcEEEEeCCCCCC--------------------cceEecCCCCCCcceeEEECCCCCE
Q 048012 345 SDDITALKFSSDGRILLSRSFDGSLKVWDLRKMKE--------------------PLKVFEDLPNNYAQTNVAFSPDEQL 404 (616)
Q Consensus 345 ~~~V~~l~~spdg~~l~s~s~Dg~v~lwd~~~~~~--------------------~~~~~~~~~~~~~v~~v~fspdg~~ 404 (616)
...|..++|.|-++++++-+.|...+.+.+...+. ..+.+..-........++|+|+|.+
T Consensus 165 ~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~l 244 (434)
T KOG1009|consen 165 EHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSL 244 (434)
T ss_pred ccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcE
Confidence 99999999999999999999998777776643211 1111111112233466899999999
Q ss_pred EEEeecccc-ccC-CCceEEEEeCCCCce-EEEEecCCCCCeEEEEEcC------------------CCCcEEEEeccC-
Q 048012 405 FLTGTSVER-EST-TGGLLCFYDREKLEL-VSRVGISPACSVVQCAWHP------------------KLNQIFATAGDK- 462 (616)
Q Consensus 405 l~~gs~~~~-~~~-~dg~i~iwd~~~~~~-~~~~~~~~~~~v~~~~~~p------------------~~~~l~~~~~d~- 462 (616)
|++....-. ... .-+..++|+....+. ...+.. ....+..+.|+| -.-.++.++.+.
T Consensus 245 lvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~-~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt~~sv 323 (434)
T KOG1009|consen 245 LVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPS-PKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIATKNSV 323 (434)
T ss_pred EEcccceeeeCCceeeceeEeeccccccCceeecCC-CCcceEEEEeeeeEEEeccccccccccccccceEEEEeecceE
Confidence 998763211 111 134456776554332 222221 223334444333 111222233221
Q ss_pred --------------CCCceEEEecccCCCCCcEEEEecCCcceecccccCCce
Q 048012 463 --------------SQGGTHILYDPRLSERGALVCVARAPRKKSVDDFEVAPV 501 (616)
Q Consensus 463 --------------~~~~~~~v~~~~~s~~g~~l~s~~~d~~~~~wd~~~~~~ 501 (616)
.+-|...|.|++|+++|..|+..+.|+...+-.++..++
T Consensus 324 yvydtq~~~P~~~v~nihy~~iTDiaws~dg~~l~vSS~DGyCS~vtfe~~el 376 (434)
T KOG1009|consen 324 YVYDTQTLEPLAVVDNIHYSAITDIAWSDDGSVLLVSSTDGFCSLVTFEPWEL 376 (434)
T ss_pred EEeccccccceEEEeeeeeeeecceeecCCCcEEEEeccCCceEEEEEcchhc
Confidence 124556677899999999999999999876655544443
No 163
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.84 E-value=5.4e-19 Score=160.90 Aligned_cols=258 Identities=17% Similarity=0.314 Sum_probs=186.5
Q ss_pred EecCCcccEEEEEECCCCCEEE-EEEcC-------CcEEEEeCCCCccc-----cccceecCCCCCCceEEEEecCCCCe
Q 048012 144 VLKGHTKIVSALAVDHSGSRVL-SGSYD-------YTVRMYDFQGMNSR-----LQSFRQLEPSEGHQVRNLSWSPTSDR 210 (616)
Q Consensus 144 ~l~~H~~~V~~v~~sp~g~~la-sgs~D-------g~i~iwd~~~~~~~-----~~~~~~~~~~~~~~v~~l~~sp~g~~ 210 (616)
+|.+|.+.|..++-+|..++|+ |+-.+ ..+.||.+...... +..+..+...+-+.|.|+.|.|++..
T Consensus 58 vf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~k 137 (370)
T KOG1007|consen 58 VFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSDK 137 (370)
T ss_pred hhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCCe
Confidence 6778999999999999766554 44332 34789998643222 33333333334457999999999999
Q ss_pred EEEEeCCCeEEEEECCCCee--eeEeeCceeEeecccCCCcccceEEEEEcC-CCCCEEEEEeCCCCEEEEECCCccccc
Q 048012 211 FLCVTGSAQAKIYDRDGLTL--GEFVKGDMYIRDLKNTKGHICGLTCGEWHP-KTKETILTSSEDGSLRIWDVNEFKSQK 287 (616)
Q Consensus 211 l~~~s~d~~v~vwd~~~~~~--~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p-~~~~~l~s~s~Dg~v~iwd~~~~~~~~ 287 (616)
|++.. +..|.+|+++.... .+. ......+|....++.+|+| ...+.+++. .|++++.||+++.++..
T Consensus 138 lasm~-dn~i~l~~l~ess~~vaev--------~ss~s~e~~~~ftsg~WspHHdgnqv~tt-~d~tl~~~D~RT~~~~~ 207 (370)
T KOG1007|consen 138 LASMD-DNNIVLWSLDESSKIVAEV--------LSSESAEMRHSFTSGAWSPHHDGNQVATT-SDSTLQFWDLRTMKKNN 207 (370)
T ss_pred eEEec-cCceEEEEcccCcchheee--------cccccccccceecccccCCCCccceEEEe-CCCcEEEEEccchhhhc
Confidence 88766 88999999885432 111 1112234677889999999 334555554 58999999999876665
Q ss_pred eEEeeeccCCCCccEEEEEECCCCC-eEEEEeCCCcEEEEeCCCCCCCCCceeeecCCCCCeEEEEEcC-CCCeEEEEec
Q 048012 288 QVIKPKLARPGRVAVTTCAWDCDGK-CIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHSDDITALKFSS-DGRILLSRSF 365 (616)
Q Consensus 288 ~~~~~~~~~~~~~~v~~~~~sp~g~-~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp-dg~~l~s~s~ 365 (616)
.+.. .|...|..+.|+|+-+ +|++++.||.|+|||.+.. ...+..+.+|..+|++|.|+| -.++|++++.
T Consensus 208 sI~d-----AHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~t---k~pv~el~~HsHWvW~VRfn~~hdqLiLs~~S 279 (370)
T KOG1007|consen 208 SIED-----AHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKT---KFPVQELPGHSHWVWAVRFNPEHDQLILSGGS 279 (370)
T ss_pred chhh-----hhcceeeeccCCCCceEEEEEcCCCccEEEEeccCC---CccccccCCCceEEEEEEecCccceEEEecCC
Confidence 5433 3333799999999865 6888999999999999974 477889999999999999999 4568899999
Q ss_pred CCcEEEEeCCCCCC----------------------------cceEecCCCCCCcceeEEECCCCCEEEEeeccccccCC
Q 048012 366 DGSLKVWDLRKMKE----------------------------PLKVFEDLPNNYAQTNVAFSPDEQLFLTGTSVERESTT 417 (616)
Q Consensus 366 Dg~v~lwd~~~~~~----------------------------~~~~~~~~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~ 417 (616)
|..|.||....-.. .+..+.. +...|.+++||.-..++++.-+ .
T Consensus 280 Ds~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tyde--hEDSVY~~aWSsadPWiFASLS------Y 351 (370)
T KOG1007|consen 280 DSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDE--HEDSVYALAWSSADPWIFASLS------Y 351 (370)
T ss_pred CceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccc--cccceEEEeeccCCCeeEEEec------c
Confidence 99999997643210 1112222 4456999999998888777654 8
Q ss_pred CceEEEEeCC
Q 048012 418 GGLLCFYDRE 427 (616)
Q Consensus 418 dg~i~iwd~~ 427 (616)
||.+.|=.+.
T Consensus 352 DGRviIs~V~ 361 (370)
T KOG1007|consen 352 DGRVIISSVP 361 (370)
T ss_pred CceEEeecCC
Confidence 9999776654
No 164
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.83 E-value=7.1e-20 Score=195.22 Aligned_cols=253 Identities=20% Similarity=0.358 Sum_probs=191.8
Q ss_pred cccEEEEEECCCCCE----EEEEEcCCcEEEEeCCCC--ccccccceecCCCCCCceEEEEecCCCC-eEEEEeCCCeEE
Q 048012 149 TKIVSALAVDHSGSR----VLSGSYDYTVRMYDFQGM--NSRLQSFRQLEPSEGHQVRNLSWSPTSD-RFLCVTGSAQAK 221 (616)
Q Consensus 149 ~~~V~~v~~sp~g~~----lasgs~Dg~i~iwd~~~~--~~~~~~~~~~~~~~~~~v~~l~~sp~g~-~l~~~s~d~~v~ 221 (616)
....+.++|.+.|.. ||.|..||.|-+||.... +... ........|.+.|..|.|++... .|++|+.+|.|.
T Consensus 64 ~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~-~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~ 142 (1049)
T KOG0307|consen 64 SNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASE-EVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEIL 142 (1049)
T ss_pred cccceeeeecccCCCccceeeccccCCceEEecchhhccCcch-HHHhhhcccCCceeeeeccccCCceeeccCCCCcEE
Confidence 345678899887765 899999999999998753 1111 12222335777899999999866 888999999999
Q ss_pred EEECCCCeeeeEeeCceeEeeccc-CCCcccceEEEEEcCCCCCEEEEEeCCCCEEEEECCCccccceEEeeeccCCCCc
Q 048012 222 IYDRDGLTLGEFVKGDMYIRDLKN-TKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPGRV 300 (616)
Q Consensus 222 vwd~~~~~~~~~~~~~~~~~~~~~-~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~ 300 (616)
|||++..+. .+.. .......|.+++|+..-.++|++++.+|.+.|||++..+.+..+. ....+.
T Consensus 143 iWDlnn~~t-----------P~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls----~~~~~~ 207 (1049)
T KOG0307|consen 143 IWDLNKPET-----------PFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLS----DTPGRM 207 (1049)
T ss_pred EeccCCcCC-----------CCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccc----cCCCcc
Confidence 999986442 1111 233567899999999888899999999999999998764433332 223445
Q ss_pred cEEEEEECCCCC-eEEEEeCCC---cEEEEeCCCCCCCCCceeeecCCCCCeEEEEEcCCC-CeEEEEecCCcEEEEeCC
Q 048012 301 AVTTCAWDCDGK-CIAGGIGDG---SIQVWNLKPGWGSRPDIHVEKGHSDDITALKFSSDG-RILLSRSFDGSLKVWDLR 375 (616)
Q Consensus 301 ~v~~~~~sp~g~-~l~~g~~dg---~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~spdg-~~l~s~s~Dg~v~lwd~~ 375 (616)
.+..++|+|+.. .|++++.|. .|.+||+|.. ...+.++.+|...|.+|.|++.+ ++|+|++.|+.|.+|+.+
T Consensus 208 ~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~a---ssP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~ 284 (1049)
T KOG0307|consen 208 HCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFA---SSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPN 284 (1049)
T ss_pred ceeeeeeCCCCceeeeeecCCCCCceeEeeccccc---CCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCC
Confidence 789999999764 455555543 6999999974 36777889999999999999955 899999999999999999
Q ss_pred CCCCcceEecCCCCCCcceeEEECCCCC-EEEEeeccccccCCCceEEEEeCCCCc
Q 048012 376 KMKEPLKVFEDLPNNYAQTNVAFSPDEQ-LFLTGTSVERESTTGGLLCFYDREKLE 430 (616)
Q Consensus 376 ~~~~~~~~~~~~~~~~~v~~v~fspdg~-~l~~gs~~~~~~~~dg~i~iwd~~~~~ 430 (616)
++. .+..+.. ...++..+.|+|... .+++++ -+|.|.||.+....
T Consensus 285 tgE-vl~~~p~--~~nW~fdv~w~pr~P~~~A~as-------fdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 285 TGE-VLGELPA--QGNWCFDVQWCPRNPSVMAAAS-------FDGKISIYSLQGTD 330 (1049)
T ss_pred Cce-EeeecCC--CCcceeeeeecCCCcchhhhhe-------eccceeeeeeecCC
Confidence 743 3333332 456789999999887 555555 89999999987654
No 165
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.83 E-value=3.5e-19 Score=160.30 Aligned_cols=300 Identities=16% Similarity=0.184 Sum_probs=205.7
Q ss_pred CCCcceEEecCCcccEEEEEECCCCCEEEEEEcCCcEEEEeCCCCccccccceecCCCCCCceEEEEecCCCCeEEEEeC
Q 048012 137 IPMSNEIVLKGHTKIVSALAVDHSGSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSDRFLCVTG 216 (616)
Q Consensus 137 ~p~~~~~~l~~H~~~V~~v~~sp~g~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~s~ 216 (616)
.|+.+.+.|.+|...|+|+.|..++ +|.+|..-|.|++|+++++. ....+...+...|+.+.--|+ +.|.+-+.
T Consensus 2 ~pPdP~fvLRp~~~~v~s~~fqa~~-rL~sg~~~G~V~~w~lqt~r----~~~~~r~~g~~~it~lq~~p~-d~l~tqgR 75 (323)
T KOG0322|consen 2 VPPDPFFVLRPHSSSVTSVLFQANE-RLMSGLSVGIVKMWVLQTER----DLPLIRLFGRLFITNLQSIPN-DSLDTQGR 75 (323)
T ss_pred CCCCCeeEeccccchheehhhccch-hhhcccccceEEEEEeecCc----cchhhhhhccceeeceeecCC-cchhhcCC
Confidence 4677788999999999999998776 58999999999999998753 222233245566888888887 67788999
Q ss_pred CCeEEEEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCC-CEEEEECC--------C-cccc
Q 048012 217 SAQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDG-SLRIWDVN--------E-FKSQ 286 (616)
Q Consensus 217 d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg-~v~iwd~~--------~-~~~~ 286 (616)
|..+.+|++..... ..-|.-.++.+.|++.. +...+... .+..++-+ . +...
T Consensus 76 d~~L~lw~ia~s~~---------------i~i~Si~~nslgFCrfS---l~~~~k~~eqll~yp~rgsde~h~~D~g~~t 137 (323)
T KOG0322|consen 76 DPLLILWTIAYSAF---------------ISIHSIVVNSLGFCRFS---LVKKPKNSEQLLEYPSRGSDETHKQDGGDTT 137 (323)
T ss_pred CceEEEEEccCcce---------------EEEeeeeccccccccce---eccCCCcchhheecCCcccchhhhhccCccc
Confidence 99999999986443 12344445555555421 11111111 11111111 1 1111
Q ss_pred ceEEeeeccCCCCccEEEEEECC-CCC--eEEEEeCCCcEEEEeCCCCCC------CCCceeeecCCCCCeEEEEEcCCC
Q 048012 287 KQVIKPKLARPGRVAVTTCAWDC-DGK--CIAGGIGDGSIQVWNLKPGWG------SRPDIHVEKGHSDDITALKFSSDG 357 (616)
Q Consensus 287 ~~~~~~~~~~~~~~~v~~~~~sp-~g~--~l~~g~~dg~I~iwd~~~~~~------~~~~~~~~~~h~~~V~~l~~spdg 357 (616)
...+.........+.+.|..|.. ++. +|++|.++|.|.+||+.++.. ..+.......|..+|.++.|.+.-
T Consensus 138 qv~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~ 217 (323)
T KOG0322|consen 138 QVQIADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSC 217 (323)
T ss_pred eeEccCchhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhh
Confidence 11111122223334577766543 232 578899999999999987511 113344456799999999999876
Q ss_pred CeEEEEecCCcEEEEeCCCCCC--cceEecCCCCCCcceeEEECCCCCEEEEeeccccccCCCceEEEEeCCCCceEEEE
Q 048012 358 RILLSRSFDGSLKVWDLRKMKE--PLKVFEDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREKLELVSRV 435 (616)
Q Consensus 358 ~~l~s~s~Dg~v~lwd~~~~~~--~~~~~~~~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~~~~~~~~ 435 (616)
..=++++.+..+..|.+..... .+.......+ -.|..+.+-||++.+++++ .|+.|+||+.+++..+..+
T Consensus 218 ~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lkn-pGv~gvrIRpD~KIlATAG-------WD~RiRVyswrtl~pLAVL 289 (323)
T KOG0322|consen 218 DRGISGGADDKLVMYSLNHSTGSLQIRKEITLKN-PGVSGVRIRPDGKILATAG-------WDHRIRVYSWRTLNPLAVL 289 (323)
T ss_pred cCCcCCCccccceeeeeccccCcccccceEEecC-CCccceEEccCCcEEeecc-------cCCcEEEEEeccCCchhhh
Confidence 6678888888999999875322 2222211222 3388899999999999999 9999999999999999988
Q ss_pred ecCCCCCeEEEEEcCCCCcEEEEeccCCCCceEEEecc
Q 048012 436 GISPACSVVQCAWHPKLNQIFATAGDKSQGGTHILYDP 473 (616)
Q Consensus 436 ~~~~~~~v~~~~~~p~~~~l~~~~~d~~~~~~~~v~~~ 473 (616)
+. |...|++++|+|+.+.+++++. +..+.+|++
T Consensus 290 ky-Hsagvn~vAfspd~~lmAaask----D~rISLWkL 322 (323)
T KOG0322|consen 290 KY-HSAGVNAVAFSPDCELMAAASK----DARISLWKL 322 (323)
T ss_pred hh-hhcceeEEEeCCCCchhhhccC----CceEEeeec
Confidence 86 6688999999999888888876 677888864
No 166
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.82 E-value=1.3e-18 Score=172.92 Aligned_cols=244 Identities=14% Similarity=0.190 Sum_probs=174.6
Q ss_pred cCCCCCCceEEEEecCCCCeEEEEeCCCeEEEEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEe
Q 048012 191 LEPSEGHQVRNLSWSPTSDRFLCVTGSAQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSS 270 (616)
Q Consensus 191 ~~~~~~~~v~~l~~sp~g~~l~~~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s 270 (616)
+..+|.+.|.+|+..|.|.+|++|+.||+|+||.+.++..... ......|.|++|+|....-++...
T Consensus 395 vyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~-------------~~~d~~I~~vaw~P~~~~~vLAvA 461 (733)
T KOG0650|consen 395 VYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRT-------------VQFDSEIRSVAWNPLSDLCVLAVA 461 (733)
T ss_pred eEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEE-------------EeecceeEEEEecCCCCceeEEEE
Confidence 4456788899999999999999999999999999987754222 122347999999998765555555
Q ss_pred CCCCEEEEECCCccccc----------------------eEEee---------eccCCCCccEEEEEECCCCCeEEEEeC
Q 048012 271 EDGSLRIWDVNEFKSQK----------------------QVIKP---------KLARPGRVAVTTCAWDCDGKCIAGGIG 319 (616)
Q Consensus 271 ~Dg~v~iwd~~~~~~~~----------------------~~~~~---------~~~~~~~~~v~~~~~sp~g~~l~~g~~ 319 (616)
....+.|-+..-+..+. +.... ...-.+...|..+.|+..|.+|++.+.
T Consensus 462 ~~~~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~ 541 (733)
T KOG0650|consen 462 VGECVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMP 541 (733)
T ss_pred ecCceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEecc
Confidence 55556655532110000 00000 000123336889999999999999876
Q ss_pred C---CcEEEEeCCCCCCCCCceeeecCCCCCeEEEEEcCCCCeEEEEecCCcEEEEeCCCCCCcceEecCCCCCCcceeE
Q 048012 320 D---GSIQVWNLKPGWGSRPDIHVEKGHSDDITALKFSSDGRILLSRSFDGSLKVWDLRKMKEPLKVFEDLPNNYAQTNV 396 (616)
Q Consensus 320 d---g~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~v~~v 396 (616)
+ ..|.|+++... .....+....+.|.++.|+|.-.+|++++ -..|+|||+.. ...++.+ .+...+|.++
T Consensus 542 ~~~~~~VliHQLSK~----~sQ~PF~kskG~vq~v~FHPs~p~lfVaT-q~~vRiYdL~k-qelvKkL--~tg~kwiS~m 613 (733)
T KOG0650|consen 542 DSGNKSVLIHQLSKR----KSQSPFRKSKGLVQRVKFHPSKPYLFVAT-QRSVRIYDLSK-QELVKKL--LTGSKWISSM 613 (733)
T ss_pred CCCcceEEEEecccc----cccCchhhcCCceeEEEecCCCceEEEEe-ccceEEEehhH-HHHHHHH--hcCCeeeeee
Confidence 4 46889998754 33344444556799999999998888887 46799999986 3333332 3355669999
Q ss_pred EECCCCCEEEEeeccccccCCCceEEEEeCCCCceEEEEecCCCCCeEEEEEcCCCCcEEEEeccC
Q 048012 397 AFSPDEQLFLTGTSVERESTTGGLLCFYDREKLELVSRVGISPACSVVQCAWHPKLNQIFATAGDK 462 (616)
Q Consensus 397 ~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~ 462 (616)
+++|.|..|++|+ .++.++.||+.-.....+....|...|..|+||+..+.+++++.|+
T Consensus 614 sihp~GDnli~gs-------~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDg 672 (733)
T KOG0650|consen 614 SIHPNGDNLILGS-------YDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDG 672 (733)
T ss_pred eecCCCCeEEEec-------CCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCC
Confidence 9999999999999 8999999999866443333234777899999999999888888753
No 167
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.82 E-value=2.8e-19 Score=173.73 Aligned_cols=306 Identities=17% Similarity=0.196 Sum_probs=229.2
Q ss_pred EEecCCcccEEEEEECCCCCEEEEEEcCCcEEEEeCCCCccccccceecCCCCCCceEEEEecCC--CCeEEEEeCCCeE
Q 048012 143 IVLKGHTKIVSALAVDHSGSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPT--SDRFLCVTGSAQA 220 (616)
Q Consensus 143 ~~l~~H~~~V~~v~~sp~g~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~--g~~l~~~s~d~~v 220 (616)
..|..|.+.|+.|.|...|..|++||.|..|.+||..... ....+..+|...|....|-|. .+-+++.+.||+|
T Consensus 136 ~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~----~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqv 211 (559)
T KOG1334|consen 136 KKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGS----PKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQV 211 (559)
T ss_pred hcccCCCCccceeeecccCceeeccCccceEEeehhhccC----cccccccccccchhhhhccCCCCCcCceeccccCce
Confidence 4678999999999999999999999999999999998653 233344567777877788775 3458889999999
Q ss_pred EEEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEEEECCCccccceEEeeeccCCCCc
Q 048012 221 KIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPGRV 300 (616)
Q Consensus 221 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~ 300 (616)
++-.+...... ...+.+..|.+.|..++.-|+....|++++.|+.|.-+|++.......+.........+.
T Consensus 212 r~s~i~~t~~~---------e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v 282 (559)
T KOG1334|consen 212 RVSEILETGYV---------ENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERV 282 (559)
T ss_pred eeeeeccccce---------ecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccce
Confidence 98776532211 123446789999999999999999999999999999999988766555553333333455
Q ss_pred cEEEEEECCCCC-eEEEEeCCCcEEEEeCCCCCCC--CCceeeecC------CCCCeEEEEEcCCCCeEEEEecCCcEEE
Q 048012 301 AVTTCAWDCDGK-CIAGGIGDGSIQVWNLKPGWGS--RPDIHVEKG------HSDDITALKFSSDGRILLSRSFDGSLKV 371 (616)
Q Consensus 301 ~v~~~~~sp~g~-~l~~g~~dg~I~iwd~~~~~~~--~~~~~~~~~------h~~~V~~l~~spdg~~l~s~s~Dg~v~l 371 (616)
...+++.+|... .+++|+.|..+++||.+.-... ...+..+.. ..-.|++++|+.++.-|++.-.|-.|+|
T Consensus 283 ~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYL 362 (559)
T KOG1334|consen 283 GLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYL 362 (559)
T ss_pred eeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEE
Confidence 788999999655 8999999999999998763110 011122222 2245999999988877777778889999
Q ss_pred EeCCCCC-----------Ccc-eEecCCCCCCcceeEEE-CCCCCEEEEeeccccccCCCceEEEEeCCCCceEEEEecC
Q 048012 372 WDLRKMK-----------EPL-KVFEDLPNNYAQTNVAF-SPDEQLFLTGTSVERESTTGGLLCFYDREKLELVSRVGIS 438 (616)
Q Consensus 372 wd~~~~~-----------~~~-~~~~~~~~~~~v~~v~f-spdg~~l~~gs~~~~~~~~dg~i~iwd~~~~~~~~~~~~~ 438 (616)
+.-..+. ..+ +++++|.+...|..+-| -|...|+++|+ .-|.|.||+..+++.++.+...
T Consensus 363 F~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGS-------DCGhIFiW~K~t~eii~~MegD 435 (559)
T KOG1334|consen 363 FNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGS-------DCGHIFIWDKKTGEIIRFMEGD 435 (559)
T ss_pred eccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecC-------ccceEEEEecchhHHHHHhhcc
Confidence 9543211 112 23667766666777765 68899999999 8999999999999999888765
Q ss_pred CCCCeEEEEEcCCCCcEEEEeccCCCCceEEEecc
Q 048012 439 PACSVVQCAWHPKLNQIFATAGDKSQGGTHILYDP 473 (616)
Q Consensus 439 ~~~~v~~~~~~p~~~~l~~~~~d~~~~~~~~v~~~ 473 (616)
.. -|+|+.=||-...|++++- ++.++||.+
T Consensus 436 r~-VVNCLEpHP~~PvLAsSGi----d~DVKIWTP 465 (559)
T KOG1334|consen 436 RH-VVNCLEPHPHLPVLASSGI----DHDVKIWTP 465 (559)
T ss_pred cc-eEeccCCCCCCchhhccCC----ccceeeecC
Confidence 44 7888889998887777775 667777766
No 168
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.82 E-value=4.8e-19 Score=172.12 Aligned_cols=228 Identities=16% Similarity=0.220 Sum_probs=177.0
Q ss_pred cEEEEEECCCCCEEEEEEcCCcEEEEeCCCCccccccceecCCCCCCceEEEEecCCCCeEEEEeCCCeEEEEECCCCee
Q 048012 151 IVSALAVDHSGSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSDRFLCVTGSAQAKIYDRDGLTL 230 (616)
Q Consensus 151 ~V~~v~~sp~g~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~s~d~~v~vwd~~~~~~ 230 (616)
.-.||+......++++|+..+.|+|||+... .+......|...|+++.|+....+|++++..|.|.|..+.+..-
T Consensus 81 ~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~k-----l~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~ 155 (673)
T KOG4378|consen 81 NAFCVACASQSLYEISGGQSGCVKIWDLRAK-----LIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQK 155 (673)
T ss_pred hHHHHhhhhcceeeeccCcCceeeehhhHHH-----HHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCcc
Confidence 3345554445589999999999999999742 33445556788999999999999999999999999999886542
Q ss_pred eeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEEEECCCccccceEEeeeccCCCCccEEEEEECCC
Q 048012 231 GEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWDCD 310 (616)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~ 310 (616)
... ...+....|.-+.|++..+.+|.+++.+|.|.+||+.......... ..|..+...++|+|.
T Consensus 156 tt~-----------f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~-----~~HsAP~~gicfsps 219 (673)
T KOG4378|consen 156 TTT-----------FTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHAS-----EAHSAPCRGICFSPS 219 (673)
T ss_pred ccc-----------eecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchh-----hhccCCcCcceecCC
Confidence 111 0123344567899999888899999999999999998654443332 356668889999995
Q ss_pred -CCeEEEEeCCCcEEEEeCCCCCCCCCceeeecCCCCCeEEEEEcCCCCeEEEEecCCcEEEEeCCCCCCcceEecCCCC
Q 048012 311 -GKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHSDDITALKFSSDGRILLSRSFDGSLKVWDLRKMKEPLKVFEDLPN 389 (616)
Q Consensus 311 -g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~ 389 (616)
..+|++.+.|..|.+||++.. ..... .....+.+.|+|+++|.+|+.|...|.|..||+|..+.|+.++..|..
T Consensus 220 ne~l~vsVG~Dkki~~yD~~s~----~s~~~-l~y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~ 294 (673)
T KOG4378|consen 220 NEALLVSVGYDKKINIYDIRSQ----ASTDR-LTYSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDA 294 (673)
T ss_pred ccceEEEecccceEEEeecccc----cccce-eeecCCcceeeecCCceEEEeecCCceEEEEecccCCCCceEeeeccc
Confidence 457888899999999999863 22222 234457899999999999999999999999999999999999877654
Q ss_pred CCcceeEEECCCCCEEEE
Q 048012 390 NYAQTNVAFSPDEQLFLT 407 (616)
Q Consensus 390 ~~~v~~v~fspdg~~l~~ 407 (616)
. |++++|-+.- .+++
T Consensus 295 s--Vt~vafq~s~-tvlt 309 (673)
T KOG4378|consen 295 S--VTRVAFQPSP-TVLT 309 (673)
T ss_pred c--eeEEEeeecc-eeee
Confidence 4 9999998765 4443
No 169
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.81 E-value=6.4e-18 Score=177.88 Aligned_cols=303 Identities=19% Similarity=0.246 Sum_probs=207.4
Q ss_pred CcccEEEEEECCCCCEEEEEEcCCcEEEEeCCCCccccccceecCCCCCCceEEEEecCC--CCeEEEEeCCCeEEEEEC
Q 048012 148 HTKIVSALAVDHSGSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPT--SDRFLCVTGSAQAKIYDR 225 (616)
Q Consensus 148 H~~~V~~v~~sp~g~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~--g~~l~~~s~d~~v~vwd~ 225 (616)
..+.-..+.|+|-...++++...-.|+|||.+... .+..|.... .....|..+.+-.. ..++++++.||.|+||+-
T Consensus 1063 n~~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~-~l~~F~n~~-~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~ 1140 (1387)
T KOG1517|consen 1063 NNQPPKTLKFHPFEPQIAAADDRERIRVWDWEKGR-LLNGFDNGA-FPDTRVSDLELINEQDDALLLTASSDGVIRIWKD 1140 (1387)
T ss_pred CCCCCceeeecCCCceeEEcCCcceEEEEecccCc-eeccccCCC-CCCCccceeeeecccchhheeeeccCceEEEecc
Confidence 34456678899999999999878899999998643 233332222 23445888888654 457999999999999984
Q ss_pred CCC--eeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEEEECCCccccceEEeeeccCCCCccEE
Q 048012 226 DGL--TLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPGRVAVT 303 (616)
Q Consensus 226 ~~~--~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~ 303 (616)
... ...+++..-..+.++.......+ .-+.|....+ .|++++.-..|||||.........+.. +....|+
T Consensus 1141 y~~~~~~~eLVTaw~~Ls~~~~~~r~~~--~v~dWqQ~~G-~Ll~tGd~r~IRIWDa~~E~~~~diP~-----~s~t~vT 1212 (1387)
T KOG1517|consen 1141 YADKWKKPELVTAWSSLSDQLPGARGTG--LVVDWQQQSG-HLLVTGDVRSIRIWDAHKEQVVADIPY-----GSSTLVT 1212 (1387)
T ss_pred cccccCCceeEEeeccccccCccCCCCC--eeeehhhhCC-eEEecCCeeEEEEEecccceeEeeccc-----CCCccce
Confidence 322 22233332222233322222222 4457877765 455555578999999986554443322 2233566
Q ss_pred EEEEC-CCCCeEEEEeCCCcEEEEeCCCCCCCCCceeeecCCCCC--eEEEEEcCCCCe-EEEEecCCcEEEEeCCCC-C
Q 048012 304 TCAWD-CDGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHSDD--ITALKFSSDGRI-LLSRSFDGSLKVWDLRKM-K 378 (616)
Q Consensus 304 ~~~~s-p~g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~h~~~--V~~l~~spdg~~-l~s~s~Dg~v~lwd~~~~-~ 378 (616)
++.-+ ..|+.|++|..||+|++||.+... ....+...+.|... |..+.+.+.|-- |++|+.||.|++||+|.. .
T Consensus 1213 aLS~~~~~gn~i~AGfaDGsvRvyD~R~a~-~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~ 1291 (1387)
T KOG1517|consen 1213 ALSADLVHGNIIAAGFADGSVRVYDRRMAP-PDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSK 1291 (1387)
T ss_pred eecccccCCceEEEeecCCceEEeecccCC-ccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcc
Confidence 66433 357999999999999999999753 33567788899988 999999987654 999999999999999973 2
Q ss_pred CcceEecCCC-CCCcceeEEECCCCCEEEEeeccccccCCCceEEEEeCCCCceEEEEe------cCCCCCeEEEEEcCC
Q 048012 379 EPLKVFEDLP-NNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREKLELVSRVG------ISPACSVVQCAWHPK 451 (616)
Q Consensus 379 ~~~~~~~~~~-~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~~~~~~~~~------~~~~~~v~~~~~~p~ 451 (616)
.....+..+- .++..+++..+++...+|+|+ . +.|+||++... .+..+. ....+.+.+++|||.
T Consensus 1292 e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs-------~-q~ikIy~~~G~-~l~~~k~n~~F~~q~~gs~scL~FHP~ 1362 (1387)
T KOG1517|consen 1292 ETFLTIVAHWEYGSALTALTVHEHAPIIASGS-------A-QLIKIYSLSGE-QLNIIKYNPGFMGQRIGSVSCLAFHPH 1362 (1387)
T ss_pred cccceeeeccccCccceeeeeccCCCeeeecC-------c-ceEEEEecChh-hhcccccCcccccCcCCCcceeeecch
Confidence 2222222211 123489999999999999998 5 99999997533 222221 122357899999999
Q ss_pred CCcEEEEeccCCCCceEEEeccc
Q 048012 452 LNQIFATAGDKSQGGTHILYDPR 474 (616)
Q Consensus 452 ~~~l~~~~~d~~~~~~~~v~~~~ 474 (616)
.-.|++|.. +..+.||...
T Consensus 1363 ~~llAaG~~----Ds~V~iYs~~ 1381 (1387)
T KOG1517|consen 1363 RLLLAAGSA----DSTVSIYSCE 1381 (1387)
T ss_pred hHhhhhccC----CceEEEeecC
Confidence 777777755 8889999765
No 170
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.81 E-value=4.7e-18 Score=161.12 Aligned_cols=240 Identities=15% Similarity=0.274 Sum_probs=181.9
Q ss_pred ecCCCCCCceEEEEecCCCC-eEEEEeCCCeEEEEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEE
Q 048012 190 QLEPSEGHQVRNLSWSPTSD-RFLCVTGSAQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILT 268 (616)
Q Consensus 190 ~~~~~~~~~v~~l~~sp~g~-~l~~~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s 268 (616)
....+|..+|..++|+|-.+ .|++|+.|.+|.||.+...-+..-.. ..+..+.||...|.-++|||...++|++
T Consensus 75 P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~lt-----epvv~L~gH~rrVg~V~wHPtA~NVLls 149 (472)
T KOG0303|consen 75 PLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLT-----EPVVELYGHQRRVGLVQWHPTAPNVLLS 149 (472)
T ss_pred CCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcc-----cceEEEeecceeEEEEeecccchhhHhh
Confidence 34457888999999999654 58888999999999987543321111 2355678999999999999999999999
Q ss_pred EeCCCCEEEEECCCccccceEEeeeccCCCCccEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCCCCCceeeecCCCCC-
Q 048012 269 SSEDGSLRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWDCDGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHSDD- 347 (616)
Q Consensus 269 ~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~h~~~- 347 (616)
++.|.+|.|||+.++.....+ .|...|.++.|+.+|.+|++.+.|..|||||.+.+ ..+....+|.+.
T Consensus 150 ag~Dn~v~iWnv~tgeali~l-------~hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~----~~v~e~~~heG~k 218 (472)
T KOG0303|consen 150 AGSDNTVSIWNVGTGEALITL-------DHPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRG----TVVSEGVAHEGAK 218 (472)
T ss_pred ccCCceEEEEeccCCceeeec-------CCCCeEEEEEeccCCceeeeecccceeEEEcCCCC----cEeeecccccCCC
Confidence 999999999999988765443 26668999999999999999999999999999987 566666788754
Q ss_pred eEEEEEcCCCCeEEEEe---cCCcEEEEeCCCCCCcceEecCCCCCCcceeEEECCCCCEEEEeeccccccCCCceEEEE
Q 048012 348 ITALKFSSDGRILLSRS---FDGSLKVWDLRKMKEPLKVFEDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFY 424 (616)
Q Consensus 348 V~~l~~spdg~~l~s~s---~Dg~v~lwd~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iw 424 (616)
-..+.|-.+|.++-||- .+..+-|||..+...++... .+.....|.---|.+|..+|+.++. .|+.|+-|
T Consensus 219 ~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~-elDtSnGvl~PFyD~dt~ivYl~GK------GD~~IRYy 291 (472)
T KOG0303|consen 219 PARAIFLASGKIFTTGFSRMSERQIALWDPNNLEEPIALQ-ELDTSNGVLLPFYDPDTSIVYLCGK------GDSSIRYF 291 (472)
T ss_pred cceeEEeccCceeeeccccccccceeccCcccccCcceeE-EeccCCceEEeeecCCCCEEEEEec------CCcceEEE
Confidence 45566778888444432 46789999999888775443 4444555777778999999888874 89999999
Q ss_pred eCCCCceEEEE--ecCCCCCeEEEEEcCCC
Q 048012 425 DREKLELVSRV--GISPACSVVQCAWHPKL 452 (616)
Q Consensus 425 d~~~~~~~~~~--~~~~~~~v~~~~~~p~~ 452 (616)
.+.+-.....+ .+....+-..+.|.|..
T Consensus 292 Eit~d~P~~hyln~f~S~epQRG~g~mPKR 321 (472)
T KOG0303|consen 292 EITNEPPFVHYLNTFSSKEPQRGMGFMPKR 321 (472)
T ss_pred EecCCCceeEEecccccCCccccccccccc
Confidence 98876632222 22233445566777764
No 171
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.80 E-value=3.2e-18 Score=158.74 Aligned_cols=257 Identities=15% Similarity=0.216 Sum_probs=186.6
Q ss_pred CCcccEEEEEECCC----CCEEEEEEcCCcEEEEeCCCCccccccceecCCCCCCceEEEEecCCC-CeEEEEeCCCeEE
Q 048012 147 GHTKIVSALAVDHS----GSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTS-DRFLCVTGSAQAK 221 (616)
Q Consensus 147 ~H~~~V~~v~~sp~----g~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g-~~l~~~s~d~~v~ 221 (616)
.|......++|+-+ ..+||.|+.-|.|||.|+..+ .+......|+..|..+.|.|+. +++++++.|..|+
T Consensus 87 d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~-----~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svR 161 (385)
T KOG1034|consen 87 DHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSG-----QCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVR 161 (385)
T ss_pred CCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchh-----hhccceeccCccchhhhcCCCCCcEEEEecCCceEE
Confidence 45666666777543 458999999999999999875 3344455799999999999975 6788999999999
Q ss_pred EEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEEEECCCccccceEE-----------
Q 048012 222 IYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVI----------- 290 (616)
Q Consensus 222 vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~----------- 290 (616)
+|++.+...... +.-..||...|.++.|++++. .|++|+.|.+|++|++...+....+.
T Consensus 162 lwnI~~~~Cv~V---------fGG~egHrdeVLSvD~~~~gd-~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~ 231 (385)
T KOG1034|consen 162 LWNIQTDVCVAV---------FGGVEGHRDEVLSVDFSLDGD-RIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTT 231 (385)
T ss_pred EEeccCCeEEEE---------ecccccccCcEEEEEEcCCCC-eeeccCCcceEEEEecChhHHhhhhhhhcccCCCCcc
Confidence 999998765443 233689999999999999884 99999999999999998432111110
Q ss_pred -----------eeeccCCCCccEEEEEECCCCCeEEEEeCCCcEEEEeCCC-CC---------CCCCceeeecCCCCCeE
Q 048012 291 -----------KPKLARPGRVAVTTCAWDCDGKCIAGGIGDGSIQVWNLKP-GW---------GSRPDIHVEKGHSDDIT 349 (616)
Q Consensus 291 -----------~~~~~~~~~~~v~~~~~sp~g~~l~~g~~dg~I~iwd~~~-~~---------~~~~~~~~~~~h~~~V~ 349 (616)
.......|+..|-|+.|- |+++++=+.++.|..|..-. .. .....+..+.-....|+
T Consensus 232 ~pfpt~~~~fp~fst~diHrnyVDCvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iW 309 (385)
T KOG1034|consen 232 RPFPTPKTHFPDFSTTDIHRNYVDCVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIW 309 (385)
T ss_pred CcCCccccccccccccccccchHHHHHHH--hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceE
Confidence 000122344455565554 68899988899999998621 10 01112233333445566
Q ss_pred EEEE--cCCCCeEEEEecCCcEEEEeCCCCCCc-ceEecCCCCCCcceeEEECCCCCEEEEeeccccccCCCceEEEEeC
Q 048012 350 ALKF--SSDGRILLSRSFDGSLKVWDLRKMKEP-LKVFEDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDR 426 (616)
Q Consensus 350 ~l~~--spdg~~l~s~s~Dg~v~lwd~~~~~~~-~~~~~~~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~ 426 (616)
-|.| .+-+++||.|...|.|.+||+++...+ ..++........|...+||.|+.+|+..+ .++.|.-||.
T Consensus 310 firf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vc-------dd~~Vwrwdr 382 (385)
T KOG1034|consen 310 FIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVC-------DDGTVWRWDR 382 (385)
T ss_pred EEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEe-------CCCcEEEEEe
Confidence 6655 456789999999999999999976542 23333444556799999999999999999 8999999995
Q ss_pred C
Q 048012 427 E 427 (616)
Q Consensus 427 ~ 427 (616)
.
T Consensus 383 v 383 (385)
T KOG1034|consen 383 V 383 (385)
T ss_pred e
Confidence 3
No 172
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.80 E-value=1.3e-17 Score=164.21 Aligned_cols=234 Identities=19% Similarity=0.210 Sum_probs=166.9
Q ss_pred CcceEEecCCcccEEEEEECCCCCEEEEEEcCCcEEEEeCCCCccccccceecCCCCCCceEEEEecCC--CCeEEEEeC
Q 048012 139 MSNEIVLKGHTKIVSALAVDHSGSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPT--SDRFLCVTG 216 (616)
Q Consensus 139 ~~~~~~l~~H~~~V~~v~~sp~g~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~--g~~l~~~s~ 216 (616)
+..+..|.||++.|+|+.|+.+|.+|++||.|-.+.|||.-. .+.+..+..+|...|.++.|-|. .+.+++|.+
T Consensus 40 L~lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~----~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAg 115 (758)
T KOG1310|consen 40 LDLEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFE----YKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAG 115 (758)
T ss_pred cchhhhhccccceecceeecCCCCEEeecCCcceEEeecchh----cceeeeeecccccceeEEeeeccCCCeEEEeccC
Confidence 456678999999999999999999999999999999999753 33556677788889999999985 457888999
Q ss_pred CCeEEEEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEEEECCCccccceEEe----e
Q 048012 217 SAQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIK----P 292 (616)
Q Consensus 217 d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~----~ 292 (616)
|..|+|+|++...-... .+...........|...|..++-.|++.+.|.+++.||+||-+|++.......-.. .
T Consensus 116 Dk~i~lfdl~~~~~~~~--d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l 193 (758)
T KOG1310|consen 116 DKLIKLFDLDSSKEGGM--DHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSIL 193 (758)
T ss_pred cceEEEEeccccccccc--ccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHH
Confidence 99999999984321111 11111234456789999999999999999999999999999999987432211100 0
Q ss_pred eccCCCCccEEEEEECCC-CCeEEEEeCCCcEEEEeCCCCCC-------CC---C----ceee-ecCCC-----------
Q 048012 293 KLARPGRVAVTTCAWDCD-GKCIAGGIGDGSIQVWNLKPGWG-------SR---P----DIHV-EKGHS----------- 345 (616)
Q Consensus 293 ~~~~~~~~~v~~~~~sp~-g~~l~~g~~dg~I~iwd~~~~~~-------~~---~----~~~~-~~~h~----------- 345 (616)
...........|+.++|. ..+|++|+.|-..++||.+.... .. + ++.. ..+|.
T Consensus 194 ~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~ 273 (758)
T KOG1310|consen 194 VNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYI 273 (758)
T ss_pred HHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccce
Confidence 001122236789999995 56899999999999999543100 00 0 1111 12232
Q ss_pred CCeEEEEEcCCCCeEEEEecCCcEEEEeCCCCC
Q 048012 346 DDITALKFSSDGRILLSRSFDGSLKVWDLRKMK 378 (616)
Q Consensus 346 ~~V~~l~~spdg~~l~s~s~Dg~v~lwd~~~~~ 378 (616)
..++-++|+|+|.-|+..-....|+++|+...+
T Consensus 274 ~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~ 306 (758)
T KOG1310|consen 274 TCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDK 306 (758)
T ss_pred eeeEEEEECCCCcEEEEeeCCeEEEEEeecCCC
Confidence 125678899999766665555679999987543
No 173
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.80 E-value=4.3e-16 Score=163.18 Aligned_cols=295 Identities=29% Similarity=0.514 Sum_probs=216.5
Q ss_pred EEecCCcccEEEEEECCCCCEEEEEEcCCcEEEEeCCCCccccccceecCCCCCCceEEEEe-cCCCC-eEEEEeC-CCe
Q 048012 143 IVLKGHTKIVSALAVDHSGSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSW-SPTSD-RFLCVTG-SAQ 219 (616)
Q Consensus 143 ~~l~~H~~~V~~v~~sp~g~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~-sp~g~-~l~~~s~-d~~ 219 (616)
..+..|...|.++.|.+.+..++.++.|+.+.+|+........ ..+...+...+..+.+ ++++. .++..+. ++.
T Consensus 59 ~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 135 (466)
T COG2319 59 LLLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLI---KSLEGLHDSSVSKLALSSPDGNSILLASSSLDGT 135 (466)
T ss_pred heeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeE---EEEeccCCCceeeEEEECCCcceEEeccCCCCcc
Confidence 3567899999999999999999999999999999988653111 1121112235667777 78887 4554444 899
Q ss_pred EEEEECCC-CeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeC-CCCEEEEECCCccccceEEeeeccCC
Q 048012 220 AKIYDRDG-LTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSE-DGSLRIWDVNEFKSQKQVIKPKLARP 297 (616)
Q Consensus 220 v~vwd~~~-~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~-Dg~v~iwd~~~~~~~~~~~~~~~~~~ 297 (616)
+.+|+... ... ...+..|...|..+.|+|++. .+++++. |+.+++|++........+. .
T Consensus 136 ~~~~~~~~~~~~------------~~~~~~~~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~------~ 196 (466)
T COG2319 136 VKLWDLSTPGKL------------IRTLEGHSESVTSLAFSPDGK-LLASGSSLDGTIKLWDLRTGKPLSTLA------G 196 (466)
T ss_pred EEEEEecCCCeE------------EEEEecCcccEEEEEECCCCC-EEEecCCCCCceEEEEcCCCceEEeec------c
Confidence 99999986 322 333578999999999999885 7777775 9999999998733333222 2
Q ss_pred CCccEEEEEECCCCC-eEEEEeCCCcEEEEeCCCCCCCCCcee-eecCCCCCeEEEEEcCCCCeEEEEecCCcEEEEeCC
Q 048012 298 GRVAVTTCAWDCDGK-CIAGGIGDGSIQVWNLKPGWGSRPDIH-VEKGHSDDITALKFSSDGRILLSRSFDGSLKVWDLR 375 (616)
Q Consensus 298 ~~~~v~~~~~sp~g~-~l~~g~~dg~I~iwd~~~~~~~~~~~~-~~~~h~~~V~~l~~spdg~~l~s~s~Dg~v~lwd~~ 375 (616)
|...|.+++|+|++. ++++++.|+.|++||...+ .... .+..|...+ ...|++++.++++++.|+.+++|+++
T Consensus 197 ~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~----~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~ 271 (466)
T COG2319 197 HTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTG----KLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLR 271 (466)
T ss_pred CCCceEEEEEcCCcceEEEEecCCCcEEEEECCCC----cEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeec
Confidence 555899999999998 5555589999999988754 4455 678888775 44899999999999999999999998
Q ss_pred CCCCcceEecCCCCCCcceeEEECCCCCEEEEeeccccccCCCceEEEEeCCCCceEEEEe-cCCCCCeEEEEEcCCCCc
Q 048012 376 KMKEPLKVFEDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREKLELVSRVG-ISPACSVVQCAWHPKLNQ 454 (616)
Q Consensus 376 ~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~~v~~~~~~p~~~~ 454 (616)
.....+..+ ..+...+.++.|+|++..+++++ .++.+.+||..+........ ..+...+..+.|.+++..
T Consensus 272 ~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~~~~-------~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (466)
T COG2319 272 SSSSLLRTL--SGHSSSVLSVAFSPDGKLLASGS-------SDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSL 342 (466)
T ss_pred CCCcEEEEE--ecCCccEEEEEECCCCCEEEEee-------CCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCE
Confidence 765533343 23356699999999999998877 67889999999888776665 334456889999323245
Q ss_pred EEEEeccCCCCceEEEecccCC
Q 048012 455 IFATAGDKSQGGTHILYDPRLS 476 (616)
Q Consensus 455 l~~~~~d~~~~~~~~v~~~~~s 476 (616)
++.+... ++.+.+|+....
T Consensus 343 ~~~~~~~---d~~~~~~~~~~~ 361 (466)
T COG2319 343 LVSGGSD---DGTIRLWDLRTG 361 (466)
T ss_pred EEEeecC---CCcEEeeecCCC
Confidence 6655332 455555665543
No 174
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.80 E-value=1.1e-17 Score=164.27 Aligned_cols=295 Identities=18% Similarity=0.311 Sum_probs=197.3
Q ss_pred CCcccEEEEEECCCCCEEEEEEcCCcEEEEeCCCCccccc-cceecCCCCCCceEEEE--ecCCCCeEEEEeCCCeEEEE
Q 048012 147 GHTKIVSALAVDHSGSRVLSGSYDYTVRMYDFQGMNSRLQ-SFRQLEPSEGHQVRNLS--WSPTSDRFLCVTGSAQAKIY 223 (616)
Q Consensus 147 ~H~~~V~~v~~sp~g~~lasgs~Dg~i~iwd~~~~~~~~~-~~~~~~~~~~~~v~~l~--~sp~g~~l~~~s~d~~v~vw 223 (616)
-|+.-|.|+.|+.....+.+++.+..+.-|++........ ....+.+...+ +.... =-...+.|+.++.||.+.|.
T Consensus 12 r~~e~vc~v~w~~~eei~~~~dDh~~~~~~~~~~~s~~~~~~p~df~pt~~h-~~~rs~~~g~~~d~~~i~s~DGkf~il 90 (737)
T KOG1524|consen 12 RNSEKVCCVDWSSNEEIYFVSDDHQIFKWSDVSRDSVEVAKLPDDFVPTDMH-LGGRSSGGGKGSDTLLICSNDGRFVIL 90 (737)
T ss_pred ccceeEEeecccccceEEEeccCceEEEeecccchhhhhhhCCcccCCcccc-ccccccCCCCCcceEEEEcCCceEEEe
Confidence 5777888999998877777666555555555543221110 00001110000 00000 01123568889999999999
Q ss_pred ECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEEEECCCccccceEEeeeccCCCCccEE
Q 048012 224 DRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPGRVAVT 303 (616)
Q Consensus 224 d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~ 303 (616)
+..+.. -+....|.+.|.+..|+|+| .-|++++.||.|++|.-... ....+. ....+|.
T Consensus 91 ~k~~rV-------------E~sv~AH~~A~~~gRW~~dG-tgLlt~GEDG~iKiWSrsGM-LRStl~------Q~~~~v~ 149 (737)
T KOG1524|consen 91 NKSARV-------------ERSISAHAAAISSGRWSPDG-AGLLTAGEDGVIKIWSRSGM-LRSTVV------QNEESIR 149 (737)
T ss_pred cccchh-------------hhhhhhhhhhhhhcccCCCC-ceeeeecCCceEEEEeccch-HHHHHh------hcCceeE
Confidence 866543 23357899999999999998 47999999999999985432 111111 1112799
Q ss_pred EEEECCCCCeEEEEeCCCcEEEEeCCCCCCCCCceeeecCCCCCeEEEEEcCCCCeEEEEecCCcEEEEeCCCCCCcceE
Q 048012 304 TCAWDCDGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHSDDITALKFSSDGRILLSRSFDGSLKVWDLRKMKEPLKV 383 (616)
Q Consensus 304 ~~~~sp~g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~v~lwd~~~~~~~~~~ 383 (616)
|++|.|+.+.++-+. .+.+.|=-+... ..+..+++|.+-|.++.|++..+++++|+.|-..+|||-.. . ..
T Consensus 150 c~~W~p~S~~vl~c~-g~h~~IKpL~~n----~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G--~--~L 220 (737)
T KOG1524|consen 150 CARWAPNSNSIVFCQ-GGHISIKPLAAN----SKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQG--A--NL 220 (737)
T ss_pred EEEECCCCCceEEec-CCeEEEeecccc----cceeEEeccCcEEEEeecCccccceeecCCceeEEeecccC--c--cc
Confidence 999999887666553 456666666543 56678899999999999999999999999999999999763 2 24
Q ss_pred ecCCCCCCcceeEEECCCCCEEEEeeccccccCCCceEEEEeCCCCceEEEEecCCCCCeEEEEEcCCCCcEEEEeccCC
Q 048012 384 FEDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREKLELVSRVGISPACSVVQCAWHPKLNQIFATAGDKS 463 (616)
Q Consensus 384 ~~~~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~ 463 (616)
+....+.++|++++|.|+ +.++.++ -++++ +..+..+.|..++|+++|.++..+++.
T Consensus 221 f~S~~~ey~ITSva~npd-~~~~v~S--------~nt~R------------~~~p~~GSifnlsWS~DGTQ~a~gt~~-- 277 (737)
T KOG1524|consen 221 FTSAAEEYAITSVAFNPE-KDYLLWS--------YNTAR------------FSSPRVGSIFNLSWSADGTQATCGTST-- 277 (737)
T ss_pred ccCChhccceeeeeeccc-cceeeee--------eeeee------------ecCCCccceEEEEEcCCCceeeccccC--
Confidence 455667889999999999 7777776 23443 222345789999999999999999985
Q ss_pred CCceEEEecccCC-CCCcEEEEecCCcceecccc
Q 048012 464 QGGTHILYDPRLS-ERGALVCVARAPRKKSVDDF 496 (616)
Q Consensus 464 ~~~~~~v~~~~~s-~~g~~l~s~~~d~~~~~wd~ 496 (616)
|+.+.-+-+.-. .-+.+=++....+.+.+.|+
T Consensus 278 -G~v~~A~~ieq~l~~~n~~~t~~~r~~I~vrdV 310 (737)
T KOG1524|consen 278 -GQLIVAYAIEQQLVSGNLKATSKSRKSITVRDV 310 (737)
T ss_pred -ceEEEeeeehhhhhhccceeEeeccceEEeehh
Confidence 666655554311 11333344444555555555
No 175
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.79 E-value=1.2e-16 Score=162.58 Aligned_cols=259 Identities=10% Similarity=0.111 Sum_probs=167.9
Q ss_pred cccEEEEEECCCCCEEEEEE-cCCcEEEEeCCCCccccccceecCCCCCCceEEEEecCCCCeEEEEeC-CCeEEEEECC
Q 048012 149 TKIVSALAVDHSGSRVLSGS-YDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSDRFLCVTG-SAQAKIYDRD 226 (616)
Q Consensus 149 ~~~V~~v~~sp~g~~lasgs-~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~s~-d~~v~vwd~~ 226 (616)
.+....++++|++++|++++ .++.|.+|++... ..+....... .......++|+|++++|++++. ++.|.+|+++
T Consensus 34 ~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~-g~l~~~~~~~--~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~ 110 (330)
T PRK11028 34 PGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADD-GALTFAAESP--LPGSPTHISTDHQGRFLFSASYNANCVSVSPLD 110 (330)
T ss_pred CCCCccEEECCCCCEEEEEECCCCcEEEEEECCC-CceEEeeeec--CCCCceEEEECCCCCEEEEEEcCCCeEEEEEEC
Confidence 35677889999999887765 4788999999631 1222122111 2224678999999999888764 7899999986
Q ss_pred CCe-eeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEEEECCCccccceEE-eeeccCCCCccEEE
Q 048012 227 GLT-LGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVI-KPKLARPGRVAVTT 304 (616)
Q Consensus 227 ~~~-~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~-~~~~~~~~~~~v~~ 304 (616)
... +... +... .+.....+++++|+++.++++...++.|++||+.+........ .......+ .....
T Consensus 111 ~~g~~~~~---------~~~~-~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g-~~p~~ 179 (330)
T PRK11028 111 KDGIPVAP---------IQII-EGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEG-AGPRH 179 (330)
T ss_pred CCCCCCCc---------eeec-cCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCC-CCCce
Confidence 321 1110 1111 1223456788999987666677778999999997633221100 00000011 13568
Q ss_pred EEECCCCCeEEEEeC-CCcEEEEeCCCCCCCCCceeeecC------CCCCeEEEEEcCCCCeEEEEe-cCCcEEEEeCCC
Q 048012 305 CAWDCDGKCIAGGIG-DGSIQVWNLKPGWGSRPDIHVEKG------HSDDITALKFSSDGRILLSRS-FDGSLKVWDLRK 376 (616)
Q Consensus 305 ~~~sp~g~~l~~g~~-dg~I~iwd~~~~~~~~~~~~~~~~------h~~~V~~l~~spdg~~l~s~s-~Dg~v~lwd~~~ 376 (616)
++|+|+|++|+++.. +++|.+|++.........+..+.. +......+.|+|++++|+++. .+++|.+|++..
T Consensus 180 ~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~ 259 (330)
T PRK11028 180 MVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSE 259 (330)
T ss_pred EEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeC
Confidence 899999999988876 899999999742111122222221 112344689999999999885 478999999975
Q ss_pred CCCcceEecCCCCCCcceeEEECCCCCEEEEeeccccccCCCceEEEEeCC
Q 048012 377 MKEPLKVFEDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDRE 427 (616)
Q Consensus 377 ~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~ 427 (616)
....+..............+.|+|+|++|+++.. .++.|.+|++.
T Consensus 260 ~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~------~~~~v~v~~~~ 304 (330)
T PRK11028 260 DGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQ------KSHHISVYEID 304 (330)
T ss_pred CCCeEEEeEEEeccccCCceEECCCCCEEEEEEc------cCCcEEEEEEc
Confidence 4433333322222234678999999999999873 58899999864
No 176
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.78 E-value=7.6e-16 Score=156.65 Aligned_cols=282 Identities=10% Similarity=0.082 Sum_probs=177.6
Q ss_pred EEEEEcCCcEEEEeCCCCccccccceecCCCCCCceEEEEecCCCCeEEEEe-CCCeEEEEECCC-CeeeeEeeCceeEe
Q 048012 164 VLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSDRFLCVT-GSAQAKIYDRDG-LTLGEFVKGDMYIR 241 (616)
Q Consensus 164 lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~s-~d~~v~vwd~~~-~~~~~~~~~~~~~~ 241 (616)
+++...++.|++|++.+. ..+.....+. .......++++|++++|++++ .++.|.+|+++. +.+...
T Consensus 5 y~~~~~~~~I~~~~~~~~-g~l~~~~~~~--~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~-------- 73 (330)
T PRK11028 5 YIASPESQQIHVWNLNHE-GALTLLQVVD--VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFA-------- 73 (330)
T ss_pred EEEcCCCCCEEEEEECCC-CceeeeeEEe--cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEe--------
Confidence 444577899999999642 2222222222 234577899999999987765 478899999863 222111
Q ss_pred ecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEEEECCCccccceEEeeeccCCCCccEEEEEECCCCCeEEEEe-CC
Q 048012 242 DLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWDCDGKCIAGGI-GD 320 (616)
Q Consensus 242 ~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~g~-~d 320 (616)
... ........+.|+|+++.++++...++.|.+|++.+........... .+...+.+++++|+|+++++++ .+
T Consensus 74 --~~~-~~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~---~~~~~~~~~~~~p~g~~l~v~~~~~ 147 (330)
T PRK11028 74 --AES-PLPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQII---EGLEGCHSANIDPDNRTLWVPCLKE 147 (330)
T ss_pred --eee-cCCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeec---cCCCcccEeEeCCCCCEEEEeeCCC
Confidence 000 1122356899999986444455568999999997432221111111 1112467788999999886554 56
Q ss_pred CcEEEEeCCCCCCCCC---ceeeecCCCCCeEEEEEcCCCCeEEEEec-CCcEEEEeCCCCCC---cceEecCCCC----
Q 048012 321 GSIQVWNLKPGWGSRP---DIHVEKGHSDDITALKFSSDGRILLSRSF-DGSLKVWDLRKMKE---PLKVFEDLPN---- 389 (616)
Q Consensus 321 g~I~iwd~~~~~~~~~---~~~~~~~h~~~V~~l~~spdg~~l~s~s~-Dg~v~lwd~~~~~~---~~~~~~~~~~---- 389 (616)
+.|.+||+........ ...... .......++|+|+|++|+++.. +++|.+|++..... .+..+...+.
T Consensus 148 ~~v~v~d~~~~g~l~~~~~~~~~~~-~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~ 226 (330)
T PRK11028 148 DRIRLFTLSDDGHLVAQEPAEVTTV-EGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSD 226 (330)
T ss_pred CEEEEEEECCCCcccccCCCceecC-CCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCC
Confidence 9999999975310100 001111 1234678999999999988876 89999999974211 1222222211
Q ss_pred CCcceeEEECCCCCEEEEeeccccccCCCceEEEEeCCCCc----eEEEEecCCCCCeEEEEEcCCCCcEEEEeccCCCC
Q 048012 390 NYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREKLE----LVSRVGISPACSVVQCAWHPKLNQIFATAGDKSQG 465 (616)
Q Consensus 390 ~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~~~----~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~~~ 465 (616)
......+.|+|++++|+++.. .++.|.+|++.... .+..+.. ......+.|+|++++|+++... +
T Consensus 227 ~~~~~~i~~~pdg~~lyv~~~------~~~~I~v~~i~~~~~~~~~~~~~~~--~~~p~~~~~~~dg~~l~va~~~---~ 295 (330)
T PRK11028 227 TRWAADIHITPDGRHLYACDR------TASLISVFSVSEDGSVLSFEGHQPT--ETQPRGFNIDHSGKYLIAAGQK---S 295 (330)
T ss_pred CccceeEEECCCCCEEEEecC------CCCeEEEEEEeCCCCeEEEeEEEec--cccCCceEECCCCCEEEEEEcc---C
Confidence 122346899999999999863 57899999985432 2333322 1235678999999999988763 6
Q ss_pred ceEEEeccc
Q 048012 466 GTHILYDPR 474 (616)
Q Consensus 466 ~~~~v~~~~ 474 (616)
+.+.+|.+.
T Consensus 296 ~~v~v~~~~ 304 (330)
T PRK11028 296 HHISVYEID 304 (330)
T ss_pred CcEEEEEEc
Confidence 788888775
No 177
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.78 E-value=2.3e-17 Score=156.54 Aligned_cols=218 Identities=17% Similarity=0.293 Sum_probs=165.6
Q ss_pred cccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEEEECCCccccceEEeee-ccCCCCccEEEEEECCC-CCeEEEEeCC
Q 048012 243 LKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKPK-LARPGRVAVTTCAWDCD-GKCIAGGIGD 320 (616)
Q Consensus 243 ~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~-~~~~~~~~v~~~~~sp~-g~~l~~g~~d 320 (616)
.-...||++.|..++|+|.+.+.|++||.|.+|.||.+-.......+..+. ...+|...|--++|+|. .+.|++++.|
T Consensus 74 ~P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~D 153 (472)
T KOG0303|consen 74 YPLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSD 153 (472)
T ss_pred CCCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCC
Confidence 445689999999999999999999999999999999997655443333221 12356668999999995 4678899999
Q ss_pred CcEEEEeCCCCCCCCCceeeecCCCCCeEEEEEcCCCCeEEEEecCCcEEEEeCCCCCCcceEecCCCCCCcceeEEECC
Q 048012 321 GSIQVWNLKPGWGSRPDIHVEKGHSDDITALKFSSDGRILLSRSFDGSLKVWDLRKMKEPLKVFEDLPNNYAQTNVAFSP 400 (616)
Q Consensus 321 g~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~v~~v~fsp 400 (616)
.+|.|||+.++ ..+..+. |..-|+++.|+.||.+|++.+.|..|+|||.+++.. +..-..|.. .....+.|-.
T Consensus 154 n~v~iWnv~tg----eali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~-v~e~~~heG-~k~~Raifl~ 226 (472)
T KOG0303|consen 154 NTVSIWNVGTG----EALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTV-VSEGVAHEG-AKPARAIFLA 226 (472)
T ss_pred ceEEEEeccCC----ceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcE-eeecccccC-CCcceeEEec
Confidence 99999999987 4444455 999999999999999999999999999999997543 333333332 3356677888
Q ss_pred CCCEEEEeeccccccCCCceEEEEeCCCCceEEEE-ecCCCCCeEEEEEcCCCCcEEEEeccCCCCceEEEeccc
Q 048012 401 DEQLFLTGTSVERESTTGGLLCFYDREKLELVSRV-GISPACSVVQCAWHPKLNQIFATAGDKSQGGTHILYDPR 474 (616)
Q Consensus 401 dg~~l~~gs~~~~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~~v~~~~~~p~~~~l~~~~~d~~~~~~~~v~~~~ 474 (616)
+|.++.+|.+ ...+..+-|||..+.+....+ .+.....|.---|.++.+.|+.++.. ++.+++|.+.
T Consensus 227 ~g~i~tTGfs----r~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~GKG---D~~IRYyEit 294 (472)
T KOG0303|consen 227 SGKIFTTGFS----RMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVYLCGKG---DSSIRYFEIT 294 (472)
T ss_pred cCceeeeccc----cccccceeccCcccccCcceeEEeccCCceEEeeecCCCCEEEEEecC---CcceEEEEec
Confidence 9996666653 115788999997776543222 22334557777899998888887764 7888888865
No 178
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.77 E-value=2e-17 Score=153.05 Aligned_cols=242 Identities=20% Similarity=0.307 Sum_probs=174.5
Q ss_pred ccEEEEEEC-------CCCCEEEEEEcCCcEEEEeCCCCccccccceecCCC-CCCceEEEEecCCCCeEEEEeCCCeEE
Q 048012 150 KIVSALAVD-------HSGSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPS-EGHQVRNLSWSPTSDRFLCVTGSAQAK 221 (616)
Q Consensus 150 ~~V~~v~~s-------p~g~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~-~~~~v~~l~~sp~g~~l~~~s~d~~v~ 221 (616)
..|...+|- |+..++|+.+.+.-|++||.-++..+ .+++..... .-....+|+|+|||.+|+ ++....|+
T Consensus 105 ~tvydy~wYs~M~s~qP~t~l~a~ssr~~PIh~wdaftG~lr-aSy~~ydh~de~taAhsL~Fs~DGeqlf-aGykrcir 182 (406)
T KOG2919|consen 105 ETVYDYCWYSRMKSDQPSTNLFAVSSRDQPIHLWDAFTGKLR-ASYRAYDHQDEYTAAHSLQFSPDGEQLF-AGYKRCIR 182 (406)
T ss_pred CEEEEEEeeeccccCCCccceeeeccccCceeeeeccccccc-cchhhhhhHHhhhhheeEEecCCCCeEe-ecccceEE
Confidence 456666653 67789999999999999998775321 112211111 112368999999999987 66788999
Q ss_pred EEECC-CCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEEEECCCccccceEEeeeccCCCCc
Q 048012 222 IYDRD-GLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPGRV 300 (616)
Q Consensus 222 vwd~~-~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~ 300 (616)
|+|+. .+.... .+....+...+..+-|.|++|+|.....++.++...++-|+.-........+ .+|..
T Consensus 183 vFdt~RpGr~c~-----vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~ll------ggh~g 251 (406)
T KOG2919|consen 183 VFDTSRPGRDCP-----VYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLL------GGHGG 251 (406)
T ss_pred EeeccCCCCCCc-----chhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeee------cccCC
Confidence 99984 222100 0111112234557789999999988779999999988888876654433322 26666
Q ss_pred cEEEEEECCCCCeEEEEeC-CCcEEEEeCCCCCCCCCceeeecCCCC-CeEEEEE--cCCCCeEEEEecCCcEEEEeCCC
Q 048012 301 AVTTCAWDCDGKCIAGGIG-DGSIQVWNLKPGWGSRPDIHVEKGHSD-DITALKF--SSDGRILLSRSFDGSLKVWDLRK 376 (616)
Q Consensus 301 ~v~~~~~sp~g~~l~~g~~-dg~I~iwd~~~~~~~~~~~~~~~~h~~-~V~~l~~--spdg~~l~s~s~Dg~v~lwd~~~ 376 (616)
.|+.+.|.++|+.|++|.. |-.|..||++. .+.++..+..|.. .-..|-| .|++++|++|+.||.|++||+..
T Consensus 252 GvThL~~~edGn~lfsGaRk~dkIl~WDiR~---~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~ 328 (406)
T KOG2919|consen 252 GVTHLQWCEDGNKLFSGARKDDKILCWDIRY---SRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKD 328 (406)
T ss_pred CeeeEEeccCcCeecccccCCCeEEEEeehh---ccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCC
Confidence 8999999999999999985 77899999997 3456666777765 3334444 67999999999999999999998
Q ss_pred CCCcceEecCCCCCCcceeEEECCCCCEEEEee
Q 048012 377 MKEPLKVFEDLPNNYAQTNVAFSPDEQLFLTGT 409 (616)
Q Consensus 377 ~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~gs 409 (616)
....+..+..+ ...+..++++|--.++++++
T Consensus 329 ~gn~~sv~~~~--sd~vNgvslnP~mpilatss 359 (406)
T KOG2919|consen 329 LGNEVSVTGNY--SDTVNGVSLNPIMPILATSS 359 (406)
T ss_pred CCCcccccccc--cccccceecCcccceeeecc
Confidence 66656555443 34488999999988888887
No 179
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.77 E-value=1.1e-16 Score=166.90 Aligned_cols=277 Identities=18% Similarity=0.242 Sum_probs=193.5
Q ss_pred CCcceEEecCCcccEEEEEECCC-CCEEEEEEcCCcEEEEeCCCCccc-cccceecCCCCCCceEEEEecCCCC--eEEE
Q 048012 138 PMSNEIVLKGHTKIVSALAVDHS-GSRVLSGSYDYTVRMYDFQGMNSR-LQSFRQLEPSEGHQVRNLSWSPTSD--RFLC 213 (616)
Q Consensus 138 p~~~~~~l~~H~~~V~~v~~sp~-g~~lasgs~Dg~i~iwd~~~~~~~-~~~~~~~~~~~~~~v~~l~~sp~g~--~l~~ 213 (616)
|...+..+. -...|+|+.|+|. ..+||.|+++|.|.+||+...... ..........|..++..+.|..+-. .+++
T Consensus 232 p~~Pe~~~~-~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s 310 (555)
T KOG1587|consen 232 PNTPELVLE-SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFS 310 (555)
T ss_pred CCCceEEEe-cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEE
Confidence 344555554 3678999999995 578889999999999999876543 3334444556777899999976544 4999
Q ss_pred EeCCCeEEEEECCCCeee-eEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEEEECCCccccc-eEEe
Q 048012 214 VTGSAQAKIYDRDGLTLG-EFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQK-QVIK 291 (616)
Q Consensus 214 ~s~d~~v~vwd~~~~~~~-~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~-~~~~ 291 (616)
++.||.|..|+++..... +....+.. ........-...+++++|.+...+.|+.|+.+|.|.-=+-....... ....
T Consensus 311 ~ssDG~i~~W~~~~l~~P~e~~~~~~~-~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~ 389 (555)
T KOG1587|consen 311 LSSDGSICSWDTDMLSLPVEGLLLESK-KHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYK 389 (555)
T ss_pred EecCCcEeeeeccccccchhhcccccc-cccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCccccccccc
Confidence 999999999987754321 11000000 00011123345789999999999999999999998774333222222 1111
Q ss_pred ee-ccCCCCccEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCCCCCceeeecCCCCCeEEEEEcCCC-CeEEEEecCCcE
Q 048012 292 PK-LARPGRVAVTTCAWDCDGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHSDDITALKFSSDG-RILLSRSFDGSL 369 (616)
Q Consensus 292 ~~-~~~~~~~~v~~~~~sp~g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~spdg-~~l~s~s~Dg~v 369 (616)
.. ....|.+.|+++.++|=+..++..+.|.+|+||..... ..++..+..+...|++++|||.. .+|+++..||.|
T Consensus 390 ~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~---~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l 466 (555)
T KOG1587|consen 390 GHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVI---ASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNL 466 (555)
T ss_pred ccccccccCcceEeeecCCCccceeeeeccceeEeccccCC---CCcchhhhhccceeeeeEEcCcCceEEEEEcCCCce
Confidence 11 23456678999999997776665555999999987732 25666677778889999999955 577788889999
Q ss_pred EEEeCCCCC-CcceEecCCCCCCcceeEEECCCCCEEEEeeccccccCCCceEEEEeCCC
Q 048012 370 KVWDLRKMK-EPLKVFEDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREK 428 (616)
Q Consensus 370 ~lwd~~~~~-~~~~~~~~~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~ 428 (616)
.|||+.... .++..... .....+.+.|++.|+.|++|. ..|.|+||++..
T Consensus 467 ~iWDLl~~~~~Pv~s~~~--~~~~l~~~~~s~~g~~lavGd-------~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 467 DIWDLLQDDEEPVLSQKV--CSPALTRVRWSPNGKLLAVGD-------ANGTTHILKLSE 517 (555)
T ss_pred ehhhhhccccCCcccccc--cccccceeecCCCCcEEEEec-------CCCcEEEEEcCc
Confidence 999997532 23333322 234467888999999999999 899999999853
No 180
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.77 E-value=2.1e-17 Score=165.89 Aligned_cols=262 Identities=16% Similarity=0.264 Sum_probs=195.4
Q ss_pred CCceEEEEecCCCCeEEEEeCCCeEEEEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCE
Q 048012 196 GHQVRNLSWSPTSDRFLCVTGSAQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSL 275 (616)
Q Consensus 196 ~~~v~~l~~sp~g~~l~~~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v 275 (616)
.+.|+.++|-|||..|+.+.+ ..+.|||.+.+.+ +..+++|...|+|++|+.+|+ .+++|+.|..|
T Consensus 12 ~hci~d~afkPDGsqL~lAAg-~rlliyD~ndG~l------------lqtLKgHKDtVycVAys~dGk-rFASG~aDK~V 77 (1081)
T KOG1538|consen 12 EHCINDIAFKPDGTQLILAAG-SRLLVYDTSDGTL------------LQPLKGHKDTVYCVAYAKDGK-RFASGSADKSV 77 (1081)
T ss_pred ccchheeEECCCCceEEEecC-CEEEEEeCCCccc------------ccccccccceEEEEEEccCCc-eeccCCCceeE
Confidence 346999999999999887665 4788999987764 667899999999999999884 99999999999
Q ss_pred EEEECCCccccceEEeeeccCCCCccEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCCCCCceeeecCCCCCeEEEEEcC
Q 048012 276 RIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWDCDGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHSDDITALKFSS 355 (616)
Q Consensus 276 ~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp 355 (616)
.+|+-.-.. +.+ ..|...|.|+.|+|-...|++++-. ..-+|..... .+. .......|.+++|..
T Consensus 78 I~W~~klEG----~Lk----YSH~D~IQCMsFNP~~h~LasCsLs-dFglWS~~qK-----~V~-K~kss~R~~~CsWtn 142 (1081)
T KOG1538|consen 78 IIWTSKLEG----ILK----YSHNDAIQCMSFNPITHQLASCSLS-DFGLWSPEQK-----SVS-KHKSSSRIICCSWTN 142 (1081)
T ss_pred EEecccccc----eee----eccCCeeeEeecCchHHHhhhcchh-hccccChhhh-----hHH-hhhhheeEEEeeecC
Confidence 999864211 111 2455589999999999999988753 4567876532 221 122345689999999
Q ss_pred CCCeEEEEecCCcEEEEeCCCCCCcceEecCCCCCCcceeEEECCCC-----CEEEEeeccccccCCCceEEEEeCCCCc
Q 048012 356 DGRILLSRSFDGSLKVWDLRKMKEPLKVFEDLPNNYAQTNVAFSPDE-----QLFLTGTSVERESTTGGLLCFYDREKLE 430 (616)
Q Consensus 356 dg~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~v~~v~fspdg-----~~l~~gs~~~~~~~~dg~i~iwd~~~~~ 430 (616)
||++|+.|-.||+|.|-+-. +...+.+-.....+.+|.+++|+|.. ..+++.. .+.++.+|.+. |+
T Consensus 143 DGqylalG~~nGTIsiRNk~-gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~D-------W~qTLSFy~Ls-G~ 213 (1081)
T KOG1538|consen 143 DGQYLALGMFNGTISIRNKN-GEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVAD-------WGQTLSFYQLS-GK 213 (1081)
T ss_pred CCcEEEEeccCceEEeecCC-CCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEe-------ccceeEEEEec-ce
Confidence 99999999999999998644 33334444434456789999999963 3455555 56677777764 33
Q ss_pred eEEEEecCCCCCeEEEEEcCCCCcEEEEeccC--------------CCCceEEEecccCCCCCcEEEEecCCcceecccc
Q 048012 431 LVSRVGISPACSVVQCAWHPKLNQIFATAGDK--------------SQGGTHILYDPRLSERGALVCVARAPRKKSVDDF 496 (616)
Q Consensus 431 ~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~--------------~~~~~~~v~~~~~s~~g~~l~s~~~d~~~~~wd~ 496 (616)
.+..-.. -+-...++.+.++|.+++.|++|+ ......+||.++..|+++.++.|..||++.-+++
T Consensus 214 ~Igk~r~-L~FdP~CisYf~NGEy~LiGGsdk~L~~fTR~GvrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl 292 (1081)
T KOG1538|consen 214 QIGKDRA-LNFDPCCISYFTNGEYILLGGSDKQLSLFTRDGVRLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIACYNL 292 (1081)
T ss_pred eeccccc-CCCCchhheeccCCcEEEEccCCCceEEEeecCeEEeeccccceeEEEEEEccCCceEEEEEccCeeehhhh
Confidence 3321110 112357889999999999999987 1234578999999999999999999999987776
No 181
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.77 E-value=1.1e-16 Score=148.38 Aligned_cols=233 Identities=19% Similarity=0.251 Sum_probs=175.9
Q ss_pred CceEEEEecCCCCeEEEEeCCCeEEEEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEE
Q 048012 197 HQVRNLSWSPTSDRFLCVTGSAQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLR 276 (616)
Q Consensus 197 ~~v~~l~~sp~g~~l~~~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~ 276 (616)
.+|+|.+|++++..++++..+..|.||...+..+++. ..++..|...|++++|+|.. +.|++|+.|..-+
T Consensus 11 ~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~---------~htls~Hd~~vtgvdWap~s-nrIvtcs~drnay 80 (361)
T KOG1523|consen 11 EPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEP---------AHTLSEHDKIVTGVDWAPKS-NRIVTCSHDRNAY 80 (361)
T ss_pred CceeeeeecCCCceEEeccCCceEEEEEecCCCCcee---------ceehhhhCcceeEEeecCCC-CceeEccCCCCcc
Confidence 4599999999999999999999999999988775543 66788999999999999987 5899999999999
Q ss_pred EEECCCcc-ccceEEeeeccCCCCccEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCCCCCceeeecCCCCCeEEEEEcC
Q 048012 277 IWDVNEFK-SQKQVIKPKLARPGRVAVTTCAWDCDGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHSDDITALKFSS 355 (616)
Q Consensus 277 iwd~~~~~-~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp 355 (616)
||....+. -...+.... +...++++.|+|.++.||+|+.-..|.||-+.....-....++.+.+.+.|+++.|+|
T Consensus 81 Vw~~~~~~~WkptlvLlR----iNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhp 156 (361)
T KOG1523|consen 81 VWTQPSGGTWKPTLVLLR----INRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHP 156 (361)
T ss_pred ccccCCCCeeccceeEEE----eccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccC
Confidence 99984333 222222222 2227899999999999999999999999887653212223345567888999999999
Q ss_pred CCCeEEEEecCCcEEEEeCC-----CC--------CCcce--EecCCCCCCcceeEEECCCCCEEEEeeccccccCCCce
Q 048012 356 DGRILLSRSFDGSLKVWDLR-----KM--------KEPLK--VFEDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGL 420 (616)
Q Consensus 356 dg~~l~s~s~Dg~v~lwd~~-----~~--------~~~~~--~~~~~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~ 420 (616)
++-+|++|+.|+.+++|..- .. +.++- +.+.....+.+..+.|+|+|..|+-.+ .|..
T Consensus 157 nnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~-------Hds~ 229 (361)
T KOG1523|consen 157 NNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVG-------HDST 229 (361)
T ss_pred CcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEec-------CCCc
Confidence 99999999999999998642 10 00110 111113556799999999999999998 8999
Q ss_pred EEEEeCCCCc-eEEEEecCCCCCeEEEEEcCC
Q 048012 421 LCFYDREKLE-LVSRVGISPACSVVQCAWHPK 451 (616)
Q Consensus 421 i~iwd~~~~~-~~~~~~~~~~~~v~~~~~~p~ 451 (616)
+.+-|..... .+..+.... -+..++.|-..
T Consensus 230 v~~~da~~p~~~v~~~~~~~-lP~ls~~~ise 260 (361)
T KOG1523|consen 230 VSFVDAAGPSERVQSVATAQ-LPLLSVSWISE 260 (361)
T ss_pred eEEeecCCCchhccchhhcc-CCceeeEeecC
Confidence 9999977664 444444322 55677777654
No 182
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.77 E-value=8.1e-18 Score=166.69 Aligned_cols=275 Identities=14% Similarity=0.137 Sum_probs=187.3
Q ss_pred cceEEecCCcccEEEEEECCCCCEEEEEEcCCcEEEEeCCCCc---cccccceecCCCCCCceEEEEecCCCCeEEEEeC
Q 048012 140 SNEIVLKGHTKIVSALAVDHSGSRVLSGSYDYTVRMYDFQGMN---SRLQSFRQLEPSEGHQVRNLSWSPTSDRFLCVTG 216 (616)
Q Consensus 140 ~~~~~l~~H~~~V~~v~~sp~g~~lasgs~Dg~i~iwd~~~~~---~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~s~ 216 (616)
...+++..|...|++++|++....|++++.||+|++|+++... ............|.++|.|+++..++..+++|+-
T Consensus 285 ~ik~tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~ 364 (577)
T KOG0642|consen 285 NIKFTLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGI 364 (577)
T ss_pred ceeeeeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeecc
Confidence 3455889999999999999999999999999999999994311 1111111223468889999999999999999999
Q ss_pred CCeEEEEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEEEECCCccccceEEeeeccC
Q 048012 217 SAQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLAR 296 (616)
Q Consensus 217 d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~ 296 (616)
||+|+.|++.. ....+...+. ..-...+.||+..|+.+++|... ..|++|+.||+||+|+...... ..+....
T Consensus 365 Dg~I~~w~~p~-n~dp~ds~dp-~vl~~~l~Ghtdavw~l~~s~~~-~~Llscs~DgTvr~w~~~~~~~-~~f~~~~--- 437 (577)
T KOG0642|consen 365 DGTIRCWNLPP-NQDPDDSYDP-SVLSGTLLGHTDAVWLLALSSTK-DRLLSCSSDGTVRLWEPTEESP-CTFGEPK--- 437 (577)
T ss_pred CceeeeeccCC-CCCcccccCc-chhccceeccccceeeeeecccc-cceeeecCCceEEeeccCCcCc-cccCCcc---
Confidence 99999997652 1111100000 01133468999999999999965 6899999999999999876443 1111111
Q ss_pred CCCccEEEEEECCCC-CeEEEEeCCCcEEEEeCCCCCCCCCceeeec-------CCCCCeEEEEEcCCCCeEEEEecCCc
Q 048012 297 PGRVAVTTCAWDCDG-KCIAGGIGDGSIQVWNLKPGWGSRPDIHVEK-------GHSDDITALKFSSDGRILLSRSFDGS 368 (616)
Q Consensus 297 ~~~~~v~~~~~sp~g-~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~-------~h~~~V~~l~~spdg~~l~s~s~Dg~ 368 (616)
.....+++.+-... ..+++...-+.-.++++... ..+..+. .-...+.-|.++|.+.+.+++..|+.
T Consensus 438 -e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~----s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~ 512 (577)
T KOG0642|consen 438 -EHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVV----SDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRS 512 (577)
T ss_pred -ccCCcceEeeccchhHhhhhhcccccccchhhhhh----hheeeccccCCCcccccCccceEEecCCCCeeEecccCCc
Confidence 11123445443222 22222222333334444332 1111111 11234778999999999999999999
Q ss_pred EEEEeCCCCCCcceEecCCCCCCcceeEEECCCCCEEEEeeccccccCCCceEEEEeCCCCceEEEEe
Q 048012 369 LKVWDLRKMKEPLKVFEDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREKLELVSRVG 436 (616)
Q Consensus 369 v~lwd~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~~~~~~~~~ 436 (616)
|+++|..++.. +..... +...++++++.|+|-+|++++ .|+.+++|.+....++....
T Consensus 513 Ir~~dn~~~~~-l~s~~a--~~~svtslai~~ng~~l~s~s-------~d~sv~l~kld~k~~~~es~ 570 (577)
T KOG0642|consen 513 IRFFDNKTGKI-LHSMVA--HKDSVTSLAIDPNGPYLMSGS-------HDGSVRLWKLDVKTCVLEST 570 (577)
T ss_pred eeccccccccc-chheee--ccceecceeecCCCceEEeec-------CCceeehhhccchheeeccc
Confidence 99999987654 333333 345599999999999999999 89999999988777665543
No 183
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.76 E-value=5.1e-17 Score=148.33 Aligned_cols=243 Identities=12% Similarity=0.209 Sum_probs=176.9
Q ss_pred CCcccEEEEEECCCC-----CEEEEEEcCCcEEEEeCCCCccccccce----ecCCCCCCceEEEEecC-CCCeEEEEeC
Q 048012 147 GHTKIVSALAVDHSG-----SRVLSGSYDYTVRMYDFQGMNSRLQSFR----QLEPSEGHQVRNLSWSP-TSDRFLCVTG 216 (616)
Q Consensus 147 ~H~~~V~~v~~sp~g-----~~lasgs~Dg~i~iwd~~~~~~~~~~~~----~~~~~~~~~v~~l~~sp-~g~~l~~~s~ 216 (616)
.|.-+++.+.|.|+. .+|||++ ..+|||.+........... ........+++++.|+. +-++|.+.+-
T Consensus 94 d~~YP~tK~~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSi 171 (364)
T KOG0290|consen 94 DHPYPVTKLMWIPDSKGVYPDLLATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSI 171 (364)
T ss_pred CCCCCccceEecCCccccCcchhhccc--CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecc
Confidence 688899999999975 3677654 4699999874332221111 11233456799999987 4567788888
Q ss_pred CCeEEEEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEEEECCCccccceEEeeeccC
Q 048012 217 SAQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLAR 296 (616)
Q Consensus 217 d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~ 296 (616)
|-+..|||++.+..... -..+..|...|..++|...+.++|++++.||.||+||++.......+....
T Consensus 172 DTTCTiWdie~~~~~~v---------kTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p--- 239 (364)
T KOG0290|consen 172 DTTCTIWDIETGVSGTV---------KTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDP--- 239 (364)
T ss_pred cCeEEEEEEeeccccce---------eeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCC---
Confidence 99999999987521100 112568999999999999888899999999999999998754332222111
Q ss_pred CCCccEEEEEECC-CCCeEEEEeCC-CcEEEEeCCCCCCCCCceeeecCCCCCeEEEEEcC-CCCeEEEEecCCcEEEEe
Q 048012 297 PGRVAVTTCAWDC-DGKCIAGGIGD-GSIQVWNLKPGWGSRPDIHVEKGHSDDITALKFSS-DGRILLSRSFDGSLKVWD 373 (616)
Q Consensus 297 ~~~~~v~~~~~sp-~g~~l~~g~~d-g~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp-dg~~l~s~s~Dg~v~lwd 373 (616)
....+...++|++ +-+++|+-..| ..|.|.|++.. ...+..+.+|.+.|+.|+|.| ....|++++.|..+.|||
T Consensus 240 ~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P---~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWD 316 (364)
T KOG0290|consen 240 SPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVP---CTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWD 316 (364)
T ss_pred CCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCC---CcceehhhcCcccccceEecCCCCceeeecCCcceEEEEe
Confidence 1134788899998 45677765554 56999999984 367888999999999999999 567899999999999999
Q ss_pred CCCCCC-----cceEecCCCCCCcceeEEECC-CCCEEEEee
Q 048012 374 LRKMKE-----PLKVFEDLPNNYAQTNVAFSP-DEQLFLTGT 409 (616)
Q Consensus 374 ~~~~~~-----~~~~~~~~~~~~~v~~v~fsp-dg~~l~~gs 409 (616)
+..... ++..+. ....|..+.|++ ...+|+++.
T Consensus 317 l~q~~~~~~~dPilay~---a~~EVNqi~Ws~~~~Dwiai~~ 355 (364)
T KOG0290|consen 317 LQQMPRENGEDPILAYT---AGGEVNQIQWSSSQPDWIAICF 355 (364)
T ss_pred cccccccCCCCchhhhh---ccceeeeeeecccCCCEEEEEe
Confidence 986432 222222 345699999996 466777775
No 184
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.76 E-value=2.3e-18 Score=176.92 Aligned_cols=252 Identities=22% Similarity=0.351 Sum_probs=186.5
Q ss_pred EecCCcccEEEEEECCCCCEEEEEEcCCcEEEEeCCCCccccccceecCCCCCCceEEEEecCCCCeEEEEeCCCeEEEE
Q 048012 144 VLKGHTKIVSALAVDHSGSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSDRFLCVTGSAQAKIY 223 (616)
Q Consensus 144 ~l~~H~~~V~~v~~sp~g~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~s~d~~v~vw 223 (616)
.|.||..+|+|+.|+..|.++++|+.|..|+||...+.. ......+|...|+.++.+.+..++++++.|..|++|
T Consensus 185 rLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~-----~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvW 259 (1113)
T KOG0644|consen 185 RLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETAR-----CLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVW 259 (1113)
T ss_pred HHHhhhhheeeeeeccccceEeecCccceeeeeeccchh-----hhccCCCCccccchhccchhhhhhhhcccCceEEEE
Confidence 467999999999999999999999999999999977642 122334677789999999999999999999999999
Q ss_pred ECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEEEECCCccccceEEeeecc--------
Q 048012 224 DRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLA-------- 295 (616)
Q Consensus 224 d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~-------- 295 (616)
.+..+.. +..+.+|++.|++++|+|.- +.+.||++++||.+- ........+...
T Consensus 260 rl~~~~p------------vsvLrghtgavtaiafsP~~-----sss~dgt~~~wd~r~-~~~~y~prp~~~~~~~~~~s 321 (1113)
T KOG0644|consen 260 RLPDGAP------------VSVLRGHTGAVTAIAFSPRA-----SSSDDGTCRIWDARL-EPRIYVPRPLKFTEKDLVDS 321 (1113)
T ss_pred ecCCCch------------HHHHhccccceeeeccCccc-----cCCCCCceEeccccc-cccccCCCCCCcccccceee
Confidence 9887653 66689999999999999953 778999999999871 111000000000
Q ss_pred -----------------CCCCccEEEEEECCCCCeEEEEe-----------CCCcEEEEeCCCCCCCCCceeeecCCCCC
Q 048012 296 -----------------RPGRVAVTTCAWDCDGKCIAGGI-----------GDGSIQVWNLKPGWGSRPDIHVEKGHSDD 347 (616)
Q Consensus 296 -----------------~~~~~~v~~~~~sp~g~~l~~g~-----------~dg~I~iwd~~~~~~~~~~~~~~~~h~~~ 347 (616)
....-.+-+++|..+...++++. .+-.+.+|++-.+ ...+.+.+|...
T Consensus 322 ~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g----~l~H~l~ghsd~ 397 (1113)
T KOG0644|consen 322 ILFENNGDRFLTGSRDGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTG----QLLHNLMGHSDE 397 (1113)
T ss_pred eeccccccccccccCCcccccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecccc----hhhhhhcccccc
Confidence 00001223334443333344333 3445777888776 577888899999
Q ss_pred eEEEEEcC-CCCeEEEEecCCcEEEEeCCCCCCcceEecCCCCCCcceeEEECCCCCEEEEeeccccccCCCceEEEEeC
Q 048012 348 ITALKFSS-DGRILLSRSFDGSLKVWDLRKMKEPLKVFEDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDR 426 (616)
Q Consensus 348 V~~l~~sp-dg~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~ 426 (616)
++.+.++| +.+...+++.||...|||+-.+ .+++.+. .. .+.+...+||+||..++... .-|.++|+..
T Consensus 398 ~yvLd~Hpfn~ri~msag~dgst~iwdi~eg-~pik~y~-~g-h~kl~d~kFSqdgts~~lsd-------~hgql~i~g~ 467 (1113)
T KOG0644|consen 398 VYVLDVHPFNPRIAMSAGYDGSTIIWDIWEG-IPIKHYF-IG-HGKLVDGKFSQDGTSIALSD-------DHGQLYILGT 467 (1113)
T ss_pred eeeeeecCCCcHhhhhccCCCceEeeecccC-Ccceeee-cc-cceeeccccCCCCceEecCC-------CCCceEEecc
Confidence 99999999 5667779999999999999864 4455544 22 45578889999999999887 7789999887
Q ss_pred CCCceE
Q 048012 427 EKLELV 432 (616)
Q Consensus 427 ~~~~~~ 432 (616)
..++..
T Consensus 468 gqs~s~ 473 (1113)
T KOG0644|consen 468 GQSKSQ 473 (1113)
T ss_pred CCCccc
Confidence 665544
No 185
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.76 E-value=2.7e-16 Score=168.37 Aligned_cols=336 Identities=16% Similarity=0.184 Sum_probs=214.6
Q ss_pred eEEecCCcccEEEEEECCCC-CEEEEEEcCCcEEEEeCCCCccccccceecC--CCCCCceEEEEecCCCCeEEEEeCCC
Q 048012 142 EIVLKGHTKIVSALAVDHSG-SRVLSGSYDYTVRMYDFQGMNSRLQSFRQLE--PSEGHQVRNLSWSPTSDRFLCVTGSA 218 (616)
Q Consensus 142 ~~~l~~H~~~V~~v~~sp~g-~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~--~~~~~~v~~l~~sp~g~~l~~~s~d~ 218 (616)
...|..|...|..++.++.. .+++|||.||+||+|+...........+... ...+..+.++.+.+.++.+++++.||
T Consensus 1041 VAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG 1120 (1431)
T KOG1240|consen 1041 VAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTKDG 1120 (1431)
T ss_pred eehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcCCC
Confidence 45678899999999988655 9999999999999999876443322222221 22567899999999999999999999
Q ss_pred eEEEEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCC-EEEEEeCCCCEEEEECCCccccceEEeeeccCC
Q 048012 219 QAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKE-TILTSSEDGSLRIWDVNEFKSQKQVIKPKLARP 297 (616)
Q Consensus 219 ~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~-~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~ 297 (616)
.|++.+++......... ......+.+....-|..-+|....+. .|+.+..-+.|..||++........... .
T Consensus 1121 ~v~~~~id~~~~~~~~~---~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~----~ 1193 (1431)
T KOG1240|consen 1121 SVRVLRIDHYNVSKRVA---TQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQ----L 1193 (1431)
T ss_pred eEEEEEcccccccccee---eeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcC----c
Confidence 99999988632111100 00111222223333444455444444 7888888899999999876544433221 2
Q ss_pred CCccEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCCCCCceee-ecCCCCCeEEEEEcCC---CCeEEEEe--cCCcEEE
Q 048012 298 GRVAVTTCAWDCDGKCIAGGIGDGSIQVWNLKPGWGSRPDIHV-EKGHSDDITALKFSSD---GRILLSRS--FDGSLKV 371 (616)
Q Consensus 298 ~~~~v~~~~~sp~g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~-~~~h~~~V~~l~~spd---g~~l~s~s--~Dg~v~l 371 (616)
..+.|++++.+|.++++++|+..|.+.+||+|-+ ..+.. ...+..+|..|..+|- ....++++ ..+.|.+
T Consensus 1194 ~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~----~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~ 1269 (1431)
T KOG1240|consen 1194 RHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFR----VPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVST 1269 (1431)
T ss_pred cccceeEEEecCCceEEEEecCCceEEEEEeecC----ceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceee
Confidence 2337999999999999999999999999999954 33333 3445577888887773 34555554 4778999
Q ss_pred EeCCCCCCcceEecC---------C-------CCCCcceeEEECCCCCEEEEeeccccccCCCceEEEEeCCCCceE-EE
Q 048012 372 WDLRKMKEPLKVFED---------L-------PNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREKLELV-SR 434 (616)
Q Consensus 372 wd~~~~~~~~~~~~~---------~-------~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~~~~~-~~ 434 (616)
|++.++......+.. . +..-.....++...+.++++|+ .|..|+.||....+.. ..
T Consensus 1270 wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltgg-------sd~kIR~wD~~~p~~ss~~ 1342 (1431)
T KOG1240|consen 1270 WNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGG-------SDMKIRKWDPTRPEISSYA 1342 (1431)
T ss_pred eecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecC-------CccceeeccCCCccccccc
Confidence 999876432222222 0 1111123344555667888888 8999999998765544 11
Q ss_pred Eec----------------CCCCCeEE------EEEcCC-----CCcEEEEeccCCCCceEEEecccCCC-CCcEEEEec
Q 048012 435 VGI----------------SPACSVVQ------CAWHPK-----LNQIFATAGDKSQGGTHILYDPRLSE-RGALVCVAR 486 (616)
Q Consensus 435 ~~~----------------~~~~~v~~------~~~~p~-----~~~l~~~~~d~~~~~~~~v~~~~~s~-~g~~l~s~~ 486 (616)
+.. -++..+.. ....+. ...+..+..+....|...|.++++-. +-.+|++++
T Consensus 1343 ~~~~s~~~~~~~~s~~~~~i~~~~~i~e~i~~~~tv~~t~~~~~~~~~~~~~~~ps~~H~d~Itdma~~~~~q~llvs~s 1422 (1431)
T KOG1240|consen 1343 VPGPSTSYSTNSESYDLSTIPGSQFIDEFIIYQQTVGLTEALRENQKLRPGPSDPSTYHHDPITDMATLKSEQPLLVSSS 1422 (1431)
T ss_pred ccCccccccccchhccccccCCCccchhhhhhhhhcCchhhcccccccccCCCCCcccccchhhhhhhhccCccEEEEec
Confidence 110 01111111 111111 12233333333556777777776543 356899999
Q ss_pred CCcceeccc
Q 048012 487 APRKKSVDD 495 (616)
Q Consensus 487 ~d~~~~~wd 495 (616)
.+|.|+||.
T Consensus 1423 ~dG~IkiWk 1431 (1431)
T KOG1240|consen 1423 RDGVIKIWK 1431 (1431)
T ss_pred CCCeeeecC
Confidence 999999993
No 186
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.76 E-value=1.5e-16 Score=145.37 Aligned_cols=259 Identities=21% Similarity=0.332 Sum_probs=185.0
Q ss_pred ceEEEEecCC---CCeEEEEeC----CCeEEEEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCC----CEE
Q 048012 198 QVRNLSWSPT---SDRFLCVTG----SAQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTK----ETI 266 (616)
Q Consensus 198 ~v~~l~~sp~---g~~l~~~s~----d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~----~~l 266 (616)
+++++.|+.. ..+|++|+. .+.|.|..++... .++ . ......|..+++.+.|.|+.. .+|
T Consensus 46 ~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s-~e~-------~-~~a~fd~~YP~tK~~wiPd~~g~~pdlL 116 (364)
T KOG0290|consen 46 PLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDS-GEL-------V-EDANFDHPYPVTKLMWIPDSKGVYPDLL 116 (364)
T ss_pred ceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCC-Cce-------e-ccCCCCCCCCccceEecCCccccCcchh
Confidence 4777888742 345777764 3566666655221 111 1 112257899999999999752 456
Q ss_pred EEEeCCCCEEEEECCCccc--c-ceEEeeeccCCCCccEEEEEECC-CCCeEEEEeCCCcEEEEeCCCCCCCCCceeeec
Q 048012 267 LTSSEDGSLRIWDVNEFKS--Q-KQVIKPKLARPGRVAVTTCAWDC-DGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEK 342 (616)
Q Consensus 267 ~s~s~Dg~v~iwd~~~~~~--~-~~~~~~~~~~~~~~~v~~~~~sp-~g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~ 342 (616)
+|++ -.+|+|.+..... . ..++..........+++++.|+. +.++|.+.+-|-+..|||+.++. .......+.
T Consensus 117 ATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~-~~~vkTQLI 193 (364)
T KOG0290|consen 117 ATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGV-SGTVKTQLI 193 (364)
T ss_pred hccc--CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeecc-ccceeeEEE
Confidence 6654 4699999874221 1 11111222334455899999986 67899999999999999999862 223456788
Q ss_pred CCCCCeEEEEEcCCC-CeEEEEecCCcEEEEeCCCCCCcceEecCCCCCCcceeEEECCCC-CEEEEeeccccccCCCce
Q 048012 343 GHSDDITALKFSSDG-RILLSRSFDGSLKVWDLRKMKEPLKVFEDLPNNYAQTNVAFSPDE-QLFLTGTSVERESTTGGL 420 (616)
Q Consensus 343 ~h~~~V~~l~~spdg-~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~v~~v~fspdg-~~l~~gs~~~~~~~~dg~ 420 (616)
+|..+|..|+|...+ +++|+.|.||.||+||+|......-+++......+...++|++.. +++++-.. ....
T Consensus 194 AHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~------dS~~ 267 (364)
T KOG0290|consen 194 AHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAM------DSNK 267 (364)
T ss_pred ecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhc------CCce
Confidence 999999999999855 589999999999999999876655566655546678889999854 56665442 4578
Q ss_pred EEEEeCCCCc-eEEEEecCCCCCeEEEEEcCCCCcEEEEeccCCCCceEEEecccCCCC
Q 048012 421 LCFYDREKLE-LVSRVGISPACSVVQCAWHPKLNQIFATAGDKSQGGTHILYDPRLSER 478 (616)
Q Consensus 421 i~iwd~~~~~-~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~~~~~~~v~~~~~s~~ 478 (616)
|.|.|++... .+.++. .|.+.|+.++|.|.....+++++| ++...+|++.-.+.
T Consensus 268 V~iLDiR~P~tpva~L~-~H~a~VNgIaWaPhS~~hictaGD---D~qaliWDl~q~~~ 322 (364)
T KOG0290|consen 268 VVILDIRVPCTPVARLR-NHQASVNGIAWAPHSSSHICTAGD---DCQALIWDLQQMPR 322 (364)
T ss_pred EEEEEecCCCcceehhh-cCcccccceEecCCCCceeeecCC---cceEEEEecccccc
Confidence 9999988654 455555 488999999999998888888877 88999999886654
No 187
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.75 E-value=3.8e-17 Score=163.20 Aligned_cols=251 Identities=19% Similarity=0.290 Sum_probs=174.8
Q ss_pred ECCCCCEEEE--EEcCCcEEEEeCCCCccccccceecCCCCCCceEEEEecC-CCCeEEEEeCCCeEEEEECCCCeeeeE
Q 048012 157 VDHSGSRVLS--GSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSP-TSDRFLCVTGSAQAKIYDRDGLTLGEF 233 (616)
Q Consensus 157 ~sp~g~~las--gs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp-~g~~l~~~s~d~~v~vwd~~~~~~~~~ 233 (616)
|+.+..++|. .+.-|.|-||+++........... ....+..|+.+.|.| |..+|++++.||.|+||.+....+.+.
T Consensus 587 fcan~~rvAVPL~g~gG~iai~el~~PGrLPDgv~p-~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~ 665 (1012)
T KOG1445|consen 587 FCANNKRVAVPLAGSGGVIAIYELNEPGRLPDGVMP-GLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPEN 665 (1012)
T ss_pred eeeccceEEEEecCCCceEEEEEcCCCCCCCccccc-ccccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcc
Confidence 3444556654 455789999999864432222111 113456699999999 567899999999999999886554332
Q ss_pred eeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEEEECCCccccceEEeeeccCCCCccEEEEEECCCCCe
Q 048012 234 VKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWDCDGKC 313 (616)
Q Consensus 234 ~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~ 313 (616)
.. .....+..|...|+.+.|||-..++|++++.|.+|+|||+.+.+....+ .+|...|..++|+|+|+.
T Consensus 666 ~~-----tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l------~gHtdqIf~~AWSpdGr~ 734 (1012)
T KOG1445|consen 666 EM-----TPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRL------VGHTDQIFGIAWSPDGRR 734 (1012)
T ss_pred cC-----CcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhhee------ccCcCceeEEEECCCCcc
Confidence 11 2344578999999999999988889999999999999999987655444 366778999999999999
Q ss_pred EEEEeCCCcEEEEeCCCCCCCCCceeeecC-CCCCeEEEEEcCCCCeEEEEecCC----cEEEEeCCCCC-CcceEecCC
Q 048012 314 IAGGIGDGSIQVWNLKPGWGSRPDIHVEKG-HSDDITALKFSSDGRILLSRSFDG----SLKVWDLRKMK-EPLKVFEDL 387 (616)
Q Consensus 314 l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~-h~~~V~~l~~spdg~~l~s~s~Dg----~v~lwd~~~~~-~~~~~~~~~ 387 (616)
+|+.+.||+|++|..+++. ..+..-.+ -...--.|.|.-||+++++.+.|. .|.+||..+.. .++.+.. +
T Consensus 735 ~AtVcKDg~~rVy~Prs~e---~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~-l 810 (1012)
T KOG1445|consen 735 IATVCKDGTLRVYEPRSRE---QPVYEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLDLRPLYTQV-L 810 (1012)
T ss_pred eeeeecCceEEEeCCCCCC---CccccCCCCccCcceeEEEEecCcEEEEecccccchhhhhhhhhhhccCCcceeee-e
Confidence 9999999999999998752 22222222 123345678888999999988775 58899887643 2332221 1
Q ss_pred CCCCcceeEEECCCCCEEE-EeeccccccCCCceEEEEeCCCCc
Q 048012 388 PNNYAQTNVAFSPDEQLFL-TGTSVERESTTGGLLCFYDREKLE 430 (616)
Q Consensus 388 ~~~~~v~~v~fspdg~~l~-~gs~~~~~~~~dg~i~iwd~~~~~ 430 (616)
...-.+.--.+.+|...|+ +|- .|..|.+|.+-.-.
T Consensus 811 Dvaps~LvP~YD~Ds~~lfltGK-------GD~~v~~yEv~~es 847 (1012)
T KOG1445|consen 811 DVAPSPLVPHYDYDSNVLFLTGK-------GDRFVNMYEVIYES 847 (1012)
T ss_pred cccCccccccccCCCceEEEecC-------CCceEEEEEecCCC
Confidence 1111122234566665554 554 78899999975443
No 188
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.75 E-value=7.9e-16 Score=160.46 Aligned_cols=240 Identities=15% Similarity=0.123 Sum_probs=161.7
Q ss_pred CcEEEEeCCCCccccccceecCCCCCCceEEEEecCCC-CeEEEEeCCCeEEEEECCCCeeeeEeeCceeEeecccCCCc
Q 048012 171 YTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTS-DRFLCVTGSAQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGH 249 (616)
Q Consensus 171 g~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g-~~l~~~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~h 249 (616)
+.+.||++.........+. ....|.++.|+|.. .+|+.|+.+|+|.+||+........ .........|
T Consensus 222 ~~~~vW~~~~p~~Pe~~~~-----~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~------s~ls~~~~sh 290 (555)
T KOG1587|consen 222 GVLLVWSLKNPNTPELVLE-----SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPP------SGLSALEVSH 290 (555)
T ss_pred ceEEEEecCCCCCceEEEe-----cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCC------cccccccccC
Confidence 4799999986532222222 34459999999964 5566777899999999886543100 0011224578
Q ss_pred ccceEEEEEcCCCC-CEEEEEeCCCCEEEEECCCccccceEEe-ee-----ccCCCCccEEEEEECC-CCCeEEEEeCCC
Q 048012 250 ICGLTCGEWHPKTK-ETILTSSEDGSLRIWDVNEFKSQKQVIK-PK-----LARPGRVAVTTCAWDC-DGKCIAGGIGDG 321 (616)
Q Consensus 250 ~~~v~~~~~~p~~~-~~l~s~s~Dg~v~iwd~~~~~~~~~~~~-~~-----~~~~~~~~v~~~~~sp-~g~~l~~g~~dg 321 (616)
...|+.+.|..+-. .-|++++.||.|..|+++.......... .. ........++++.|.+ +-+.+++|+.+|
T Consensus 291 ~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G 370 (555)
T KOG1587|consen 291 SEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEG 370 (555)
T ss_pred CcCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCc
Confidence 89999999966432 3588999999999999875443111111 11 1112334688999987 556799999999
Q ss_pred cEEEEeCCCCCCCC----CceeeecCCCCCeEEEEEcCCCCeEEEEecCCcEEEEeCCCCCCcceEecCCCCCCcceeEE
Q 048012 322 SIQVWNLKPGWGSR----PDIHVEKGHSDDITALKFSSDGRILLSRSFDGSLKVWDLRKMKEPLKVFEDLPNNYAQTNVA 397 (616)
Q Consensus 322 ~I~iwd~~~~~~~~----~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~v~~v~ 397 (616)
.|.--+........ +.......|.+.|+++.++|=+..++..+.|.+|+||.......++..+.... ..+++++
T Consensus 371 ~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~--~~v~~va 448 (555)
T KOG1587|consen 371 KVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSP--DYVTDVA 448 (555)
T ss_pred EEEEEeccCCcccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhcc--ceeeeeE
Confidence 99874433321111 23445667889999999999776666555599999999874455555554433 3499999
Q ss_pred ECCCCCEEEEeeccccccCCCceEEEEeCCCC
Q 048012 398 FSPDEQLFLTGTSVERESTTGGLLCFYDREKL 429 (616)
Q Consensus 398 fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~~ 429 (616)
|||....+++... .+|.|.|||+...
T Consensus 449 WSptrpavF~~~d------~~G~l~iWDLl~~ 474 (555)
T KOG1587|consen 449 WSPTRPAVFATVD------GDGNLDIWDLLQD 474 (555)
T ss_pred EcCcCceEEEEEc------CCCceehhhhhcc
Confidence 9998776665553 7999999998643
No 189
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.75 E-value=1.9e-17 Score=164.08 Aligned_cols=247 Identities=20% Similarity=0.260 Sum_probs=175.5
Q ss_pred cCCCcccceEEEEEcCCCCCEEEEEeCCCCEEEEECCCcc--ccceEEeeeccCCCCccEEEEEECCCCCeEEEEeCCCc
Q 048012 245 NTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFK--SQKQVIKPKLARPGRVAVTTCAWDCDGKCIAGGIGDGS 322 (616)
Q Consensus 245 ~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~--~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~g~~dg~ 322 (616)
++..|...|..+.|+|..+ .|++|+.|++|++|++.... ....+......++|.++|.|+++..++..+++|+.||+
T Consensus 289 tl~s~~d~ir~l~~~~sep-~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~ 367 (577)
T KOG0642|consen 289 TLRSHDDCIRALAFHPSEP-VLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGT 367 (577)
T ss_pred eeecchhhhhhhhcCCCCC-eEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCce
Confidence 3578999999999999774 89999999999999994321 11222333344688889999999999999999999999
Q ss_pred EEEEeCCCC------CCCCCceeeecCCCCCeEEEEEcCCCCeEEEEecCCcEEEEeCCCCCCcceEecCCCCCCcceeE
Q 048012 323 IQVWNLKPG------WGSRPDIHVEKGHSDDITALKFSSDGRILLSRSFDGSLKVWDLRKMKEPLKVFEDLPNNYAQTNV 396 (616)
Q Consensus 323 I~iwd~~~~------~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~v~~v 396 (616)
|+.|++... .........+.+|...|+.+++|.....|++++.||+|++|+...... .++.........+++
T Consensus 368 I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~--~~f~~~~e~g~Plsv 445 (577)
T KOG0642|consen 368 IRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP--CTFGEPKEHGYPLSV 445 (577)
T ss_pred eeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc--cccCCccccCCcceE
Confidence 999966522 223345567889999999999999999999999999999999875433 334433333445667
Q ss_pred EECCCCCEEEEeeccccccCCCceEEEEeCCCCceEEEEecC------CCCCeEEEEEcCCCCcEEEEeccC--------
Q 048012 397 AFSPDEQLFLTGTSVERESTTGGLLCFYDREKLELVSRVGIS------PACSVVQCAWHPKLNQIFATAGDK-------- 462 (616)
Q Consensus 397 ~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~~~~~~~~~~~------~~~~v~~~~~~p~~~~l~~~~~d~-------- 462 (616)
.|-.....+..++. .-+.-.++++.....+..+... ....++.+.|||.....+++..|+
T Consensus 446 d~~ss~~a~~~~s~------~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~ 519 (577)
T KOG0642|consen 446 DRTSSRPAHSLASF------RFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNK 519 (577)
T ss_pred eeccchhHhhhhhc------ccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceeccccc
Confidence 76544422222220 2232334444444333333211 113578899999998888888754
Q ss_pred -------CCCceEEEecccCCCCCcEEEEecCCcceecccccCCc
Q 048012 463 -------SQGGTHILYDPRLSERGALVCVARAPRKKSVDDFEVAP 500 (616)
Q Consensus 463 -------~~~~~~~v~~~~~s~~g~~l~s~~~d~~~~~wd~~~~~ 500 (616)
...+...+-.+++-|+|-+|++++.|+.+++|.+....
T Consensus 520 ~~~~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~ 564 (577)
T KOG0642|consen 520 TGKILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKT 564 (577)
T ss_pred ccccchheeeccceecceeecCCCceEEeecCCceeehhhccchh
Confidence 12344455558888999999999999999999986554
No 190
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.74 E-value=1.5e-14 Score=151.52 Aligned_cols=292 Identities=26% Similarity=0.455 Sum_probs=211.8
Q ss_pred cceEEecCCcccEEEEEECCCCCEEEEEEc-CCcEEEEeCCCCccccccceecCCCCCCceEEEEecCCCC-eEEEEeCC
Q 048012 140 SNEIVLKGHTKIVSALAVDHSGSRVLSGSY-DYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSD-RFLCVTGS 217 (616)
Q Consensus 140 ~~~~~l~~H~~~V~~v~~sp~g~~lasgs~-Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~-~l~~~s~d 217 (616)
.....+..|...|.+++|+|++..+++++. |+.+++|++... ........|...|.+++|+|++. .+++++.+
T Consensus 146 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d 220 (466)
T COG2319 146 KLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTG-----KPLSTLAGHTDPVSSLAFSPDGGLLIASGSSD 220 (466)
T ss_pred eEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCC-----ceEEeeccCCCceEEEEEcCCcceEEEEecCC
Confidence 455678899999999999999999999886 999999998762 12222233777899999999998 45545899
Q ss_pred CeEEEEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEEEECCCccccceEEeeeccCC
Q 048012 218 AQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARP 297 (616)
Q Consensus 218 ~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~ 297 (616)
+.|++||......... .+.+|...+ ...|++++ .++++++.|+.+++|++.......... ..
T Consensus 221 ~~i~~wd~~~~~~~~~-----------~~~~~~~~~-~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~~~-----~~ 282 (466)
T COG2319 221 GTIRLWDLSTGKLLRS-----------TLSGHSDSV-VSSFSPDG-SLLASGSSDGTIRLWDLRSSSSLLRTL-----SG 282 (466)
T ss_pred CcEEEEECCCCcEEee-----------ecCCCCcce-eEeECCCC-CEEEEecCCCcEEEeeecCCCcEEEEE-----ec
Confidence 9999998763332110 356777775 44899987 688899999999999998655411111 23
Q ss_pred CCccEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCCCCCceeee--cCCCCCeEEEEEcCCCCeEEEE-ecCCcEEEEeC
Q 048012 298 GRVAVTTCAWDCDGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVE--KGHSDDITALKFSSDGRILLSR-SFDGSLKVWDL 374 (616)
Q Consensus 298 ~~~~v~~~~~sp~g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~--~~h~~~V~~l~~spdg~~l~s~-s~Dg~v~lwd~ 374 (616)
|...+.++.|+|++..+++++.|+.+.+||+... ...... ..|...|..+.|.+++..++.+ ..|+.+.+|++
T Consensus 283 ~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 358 (466)
T COG2319 283 HSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETG----KLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDL 358 (466)
T ss_pred CCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCC----ceEEEeeecccCCceEEEEECCCCCEEEEeecCCCcEEeeec
Confidence 4558999999998888888999999999988865 333333 4788889999994343455555 68899999999
Q ss_pred CCCCCcceEecCCCCCCcceeEEECCCCCEEEE-eeccccccCCCceEEEEeCCCCceEEEEecCCCCCeEEEEEcCCCC
Q 048012 375 RKMKEPLKVFEDLPNNYAQTNVAFSPDEQLFLT-GTSVERESTTGGLLCFYDREKLELVSRVGISPACSVVQCAWHPKLN 453 (616)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~-gs~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~ 453 (616)
.... ....... ...+..+.+++ ...++. +. .++.+.+|+.............. ..+..+.+.+++.
T Consensus 359 ~~~~-~~~~~~~---~~~~~~~~~~~-~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 425 (466)
T COG2319 359 RTGK-PLKTLEG---HSNVLSVSFSP-DGRVVSSGS-------TDGTVRLWDLSTGSLLRNLDGHT-SRVTSLDFSPDGK 425 (466)
T ss_pred CCCc-eeEEecC---CceEEEEEECC-CCCEEEEec-------CCCceEEEecccCeeeeeccCCC-CcEEEEEECCCCc
Confidence 8755 2222221 11178899998 533443 34 78999999999988877764322 5677888888877
Q ss_pred cEEEEeccCCCCceEEEecccC
Q 048012 454 QIFATAGDKSQGGTHILYDPRL 475 (616)
Q Consensus 454 ~l~~~~~d~~~~~~~~v~~~~~ 475 (616)
.++.++. ...+.+|++..
T Consensus 426 ~~~~~~~----~~~~~~~~~~~ 443 (466)
T COG2319 426 SLASGSS----DNTIRLWDLKT 443 (466)
T ss_pred EEEEecC----CCcEEEEeccC
Confidence 7776554 66777777654
No 191
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.74 E-value=1.1e-14 Score=137.63 Aligned_cols=241 Identities=15% Similarity=0.233 Sum_probs=171.7
Q ss_pred cccEEEEEECCCCCEEEEEEcCCcEEEEeCCCCccccccceecCCCCCCceEEEEecCCCCeEEEEeCC--CeEEEEECC
Q 048012 149 TKIVSALAVDHSGSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSDRFLCVTGS--AQAKIYDRD 226 (616)
Q Consensus 149 ~~~V~~v~~sp~g~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~s~d--~~v~vwd~~ 226 (616)
...|..+.|+.+...|..|+.|| .++|..+.... .+ .....+..|.-+-|+.. +++.++.+ ..++++++.
T Consensus 5 ~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k---~~--~~~~~~~~IvEmLFSSS--LvaiV~~~qpr~Lkv~~~K 76 (391)
T KOG2110|consen 5 KPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEK---CF--SKDTEGVSIVEMLFSSS--LVAIVSIKQPRKLKVVHFK 76 (391)
T ss_pred CcceeeeeeccceeEEEccCCCc-eeEEecCchHH---hh--cccCCCeEEEEeecccc--eeEEEecCCCceEEEEEcc
Confidence 44577778999999999999998 57887765332 11 11123334666667654 55555544 458888877
Q ss_pred CCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEEEECCCccccceEEeeeccCCCCccEEEEE
Q 048012 227 GLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPGRVAVTTCA 306 (616)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~ 306 (616)
......- ......|.++.++. +.|+++-.+. |+|||+++.+.+..+.... .+...+.+++
T Consensus 77 k~~~ICe-------------~~fpt~IL~VrmNr---~RLvV~Lee~-IyIydI~~MklLhTI~t~~---~n~~gl~AlS 136 (391)
T KOG2110|consen 77 KKTTICE-------------IFFPTSILAVRMNR---KRLVVCLEES-IYIYDIKDMKLLHTIETTP---PNPKGLCALS 136 (391)
T ss_pred cCceEEE-------------EecCCceEEEEEcc---ceEEEEEccc-EEEEecccceeehhhhccC---CCccceEeec
Confidence 5442111 12345788888875 3566666554 9999999987776654331 2222466677
Q ss_pred ECCCCCeEEEE--eCCCcEEEEeCCCCCCCCCceeeecCCCCCeEEEEEcCCCCeEEEEecCCc-EEEEeCCCCCCcceE
Q 048012 307 WDCDGKCIAGG--IGDGSIQVWNLKPGWGSRPDIHVEKGHSDDITALKFSSDGRILLSRSFDGS-LKVWDLRKMKEPLKV 383 (616)
Q Consensus 307 ~sp~g~~l~~g--~~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~-v~lwd~~~~~~~~~~ 383 (616)
++..+.+||.- ...|.|+|||+.+- ..+..+.+|.+.+.+|+|+++|.+|||+|..|+ ||+|.+.++.. +..
T Consensus 137 ~n~~n~ylAyp~s~t~GdV~l~d~~nl----~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~k-l~e 211 (391)
T KOG2110|consen 137 PNNANCYLAYPGSTTSGDVVLFDTINL----QPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQK-LYE 211 (391)
T ss_pred cCCCCceEEecCCCCCceEEEEEcccc----eeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccE-eee
Confidence 77777788753 34689999999865 677888899999999999999999999999997 79999987654 444
Q ss_pred ecCCCCCCcceeEEECCCCCEEEEeeccccccCCCceEEEEeCCCC
Q 048012 384 FEDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREKL 429 (616)
Q Consensus 384 ~~~~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~~ 429 (616)
+..-.....|.+++|+|++++|++.+ ..++|+||.+.+.
T Consensus 212 FRRG~~~~~IySL~Fs~ds~~L~~sS-------~TeTVHiFKL~~~ 250 (391)
T KOG2110|consen 212 FRRGTYPVSIYSLSFSPDSQFLAASS-------NTETVHIFKLEKV 250 (391)
T ss_pred eeCCceeeEEEEEEECCCCCeEEEec-------CCCeEEEEEeccc
Confidence 43333345689999999999999998 8999999998654
No 192
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.73 E-value=6.6e-16 Score=137.66 Aligned_cols=244 Identities=19% Similarity=0.226 Sum_probs=174.0
Q ss_pred eEEEEecCCCCeEEEEeCCCeEEEEECCCCeeee-EeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEE
Q 048012 199 VRNLSWSPTSDRFLCVTGSAQAKIYDRDGLTLGE-FVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRI 277 (616)
Q Consensus 199 v~~l~~sp~g~~l~~~s~d~~v~vwd~~~~~~~~-~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~i 277 (616)
|..-+|+|.+++|+++..+|+|.++.+....-.. ..++. ..+....+|..+|+.++|+- .+|++|+ ||.|+-
T Consensus 13 vf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk---~~iv~eqahdgpiy~~~f~d---~~Lls~g-dG~V~g 85 (325)
T KOG0649|consen 13 VFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGK---LKIVPEQAHDGPIYYLAFHD---DFLLSGG-DGLVYG 85 (325)
T ss_pred HHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCC---cceeeccccCCCeeeeeeeh---hheeecc-CceEEE
Confidence 6667899999999999999999999987432111 11111 12334489999999999983 3677766 599999
Q ss_pred EECCCccc------cceEEeeecc-CCCCccEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCCCCCceeeecCCCCCeEE
Q 048012 278 WDVNEFKS------QKQVIKPKLA-RPGRVAVTTCAWDCDGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHSDDITA 350 (616)
Q Consensus 278 wd~~~~~~------~~~~~~~~~~-~~~~~~v~~~~~sp~g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~ 350 (616)
|..+.... ...+..+... ...--.|+++...|..+.|+.++.|+.++.||+.+| .....+++|+..|.+
T Consensus 86 w~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G----~i~r~~rGHtDYvH~ 161 (325)
T KOG0649|consen 86 WEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDG----RIQREYRGHTDYVHS 161 (325)
T ss_pred eeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCC----EEEEEEcCCcceeee
Confidence 98765332 1111111111 111225889999998887777778999999999998 688899999999999
Q ss_pred EEEcCCCCeEEEEecCCcEEEEeCCCCCCcceEecCCCC--------CCcceeEEECCCCCEEEEeeccccccCCCceEE
Q 048012 351 LKFSSDGRILLSRSFDGSLKVWDLRKMKEPLKVFEDLPN--------NYAQTNVAFSPDEQLFLTGTSVERESTTGGLLC 422 (616)
Q Consensus 351 l~~spdg~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~--------~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~ 422 (616)
+.--.....+++|+.||++||||+++.+ .++++....+ ..+|. ++.-+..+|++|+ +..+.
T Consensus 162 vv~R~~~~qilsG~EDGtvRvWd~kt~k-~v~~ie~yk~~~~lRp~~g~wig--ala~~edWlvCGg--------Gp~ls 230 (325)
T KOG0649|consen 162 VVGRNANGQILSGAEDGTVRVWDTKTQK-HVSMIEPYKNPNLLRPDWGKWIG--ALAVNEDWLVCGG--------GPKLS 230 (325)
T ss_pred eeecccCcceeecCCCccEEEEeccccc-eeEEeccccChhhcCcccCceeE--EEeccCceEEecC--------CCcee
Confidence 9985555678999999999999999754 3555543322 22333 4444677888885 67899
Q ss_pred EEeCCCCceEEEEecCCCCCeEEEEEcCCCCcEEEEeccCCCCceEEEec
Q 048012 423 FYDREKLELVSRVGISPACSVVQCAWHPKLNQIFATAGDKSQGGTHILYD 472 (616)
Q Consensus 423 iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~~~~~~~v~~ 472 (616)
+|+++..++...+.++ ..|..|.|..+ .+++++. +..+.-|.
T Consensus 231 lwhLrsse~t~vfpip--a~v~~v~F~~d--~vl~~G~----g~~v~~~~ 272 (325)
T KOG0649|consen 231 LWHLRSSESTCVFPIP--ARVHLVDFVDD--CVLIGGE----GNHVQSYT 272 (325)
T ss_pred EEeccCCCceEEEecc--cceeEeeeecc--eEEEecc----ccceeeee
Confidence 9999999999999764 56888888765 5555553 44444444
No 193
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.72 E-value=1.5e-15 Score=141.09 Aligned_cols=277 Identities=20% Similarity=0.292 Sum_probs=188.6
Q ss_pred EEECCCCCEEEEEEcCCcEEEEeCCCCccccccceecCCCCCCceEEEEecCCCCeEEEEe-CCCeEEEEECCCCeeeeE
Q 048012 155 LAVDHSGSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSDRFLCVT-GSAQAKIYDRDGLTLGEF 233 (616)
Q Consensus 155 v~~sp~g~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~s-~d~~v~vwd~~~~~~~~~ 233 (616)
+.|||+|+++|+++.- .+.|-|..+.. ..+-+..+ ..|.-+.|..+..+++++. .++.|.+|++...+...
T Consensus 14 c~fSp~g~yiAs~~~y-rlviRd~~tlq-~~qlf~cl-----dki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~c- 85 (447)
T KOG4497|consen 14 CSFSPCGNYIASLSRY-RLVIRDSETLQ-LHQLFLCL-----DKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYC- 85 (447)
T ss_pred eeECCCCCeeeeeeee-EEEEeccchhh-HHHHHHHH-----HHhhheeeeccceeeeeeeeccceEEEEEeecceeEE-
Confidence 4899999999998855 77777766532 12222222 2377899999988877654 56799999988665422
Q ss_pred eeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEEEECCCccccceEEeeeccCCCCccEEEEEECCCCCe
Q 048012 234 VKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWDCDGKC 313 (616)
Q Consensus 234 ~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~ 313 (616)
.+.....++..++|+|+|.++|.+...|-.|.+|.+.+.+... +..++ ..+..++|+++|++
T Consensus 86 -----------kIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~-~~~pK------~~~kg~~f~~dg~f 147 (447)
T KOG4497|consen 86 -----------KIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYL-LPHPK------TNVKGYAFHPDGQF 147 (447)
T ss_pred -----------EeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEE-ecccc------cCceeEEECCCCce
Confidence 2345567889999999999999999999999999998754321 11111 14577888898887
Q ss_pred EEEEeCC------------------------------------CcEEEEeCCCCCCCCCceeeecCCC-CCeEEEEEcCC
Q 048012 314 IAGGIGD------------------------------------GSIQVWNLKPGWGSRPDIHVEKGHS-DDITALKFSSD 356 (616)
Q Consensus 314 l~~g~~d------------------------------------g~I~iwd~~~~~~~~~~~~~~~~h~-~~V~~l~~spd 356 (616)
.+..+.- ..|.+||.-- ....+.-|. -.+..++|+|.
T Consensus 148 ~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~L------eykv~aYe~~lG~k~v~wsP~ 221 (447)
T KOG4497|consen 148 CAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVL------EYKVYAYERGLGLKFVEWSPC 221 (447)
T ss_pred eeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchh------hheeeeeeeccceeEEEeccc
Confidence 7765532 2244454221 111111222 45889999999
Q ss_pred CCeEEEEecCCcEEEEeCCCCCC---------------------------------------------------------
Q 048012 357 GRILLSRSFDGSLKVWDLRKMKE--------------------------------------------------------- 379 (616)
Q Consensus 357 g~~l~s~s~Dg~v~lwd~~~~~~--------------------------------------------------------- 379 (616)
+++|+.|+.|+.+|+.+--+.+.
T Consensus 222 ~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~ 301 (447)
T KOG4497|consen 222 NQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMT 301 (447)
T ss_pred cceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhc
Confidence 99999999999998865321000
Q ss_pred cce--Eec---CC-CCCCcceeEEECCCCCEEEEeeccccccCCCceEEEEeCCCCceEEEEecCCCCCeEEEEEcCCCC
Q 048012 380 PLK--VFE---DL-PNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREKLELVSRVGISPACSVVQCAWHPKLN 453 (616)
Q Consensus 380 ~~~--~~~---~~-~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~ 453 (616)
++. .+. +. .....+.-++||+|..|+++-. ...-+.+.+||+++.++...+. ...+|....|+|...
T Consensus 302 pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrn-----d~~PnalW~Wdlq~l~l~avLi--Qk~piraf~WdP~~p 374 (447)
T KOG4497|consen 302 PVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRN-----DKYPNALWLWDLQNLKLHAVLI--QKHPIRAFEWDPGRP 374 (447)
T ss_pred ceeeecccCCCCCCCcccccceeeecCCceEEeeec-----CCCCceEEEEechhhhhhhhhh--hccceeEEEeCCCCc
Confidence 000 000 00 0122356689999999999976 2355789999999988766553 346799999999999
Q ss_pred cEEEEeccCCCCceEEEeccc
Q 048012 454 QIFATAGDKSQGGTHILYDPR 474 (616)
Q Consensus 454 ~l~~~~~d~~~~~~~~v~~~~ 474 (616)
.|+...+ +....+|.++
T Consensus 375 rL~vctg----~srLY~W~ps 391 (447)
T KOG4497|consen 375 RLVVCTG----KSRLYFWAPS 391 (447)
T ss_pred eEEEEcC----CceEEEEcCC
Confidence 9998887 6667788766
No 194
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.72 E-value=1.5e-16 Score=153.00 Aligned_cols=204 Identities=21% Similarity=0.269 Sum_probs=147.9
Q ss_pred EEEEECCCCCEEEEEEcCCcEEEEeCCCCccccccceecCCCCCCceEEEEecCCCCeEEEEeCCCeEEEEECCCCeeee
Q 048012 153 SALAVDHSGSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSDRFLCVTGSAQAKIYDRDGLTLGE 232 (616)
Q Consensus 153 ~~v~~sp~g~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~s~d~~v~vwd~~~~~~~~ 232 (616)
.+++|+.+|..|++|+.||++|||++..+... ..+..|...|.++.|+|||+.|++.+.+ ..+||+.+.+....
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~-----l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a 221 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTI-----LEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALA 221 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhh-----hhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhh
Confidence 78899999999999999999999998876422 2233466779999999999999999999 99999998663211
Q ss_pred EeeCceeEeecccCCCcccceEEEEEcCCC---CCEEEE-EeCCCCEEEEECCCccccceEEeeeccCCCCccEEEEEEC
Q 048012 233 FVKGDMYIRDLKNTKGHICGLTCGEWHPKT---KETILT-SSEDGSLRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWD 308 (616)
Q Consensus 233 ~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~---~~~l~s-~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 308 (616)
. ..-..-...+..+.|..++ .-++++ ...-+.|++||+.....- .+............|++++.+
T Consensus 222 ~----------~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~-~~l~~~~~~~~~~siSsl~VS 290 (398)
T KOG0771|consen 222 R----------KTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGS-NFLRLRKKIKRFKSISSLAVS 290 (398)
T ss_pred h----------cCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccc-cccchhhhhhccCcceeEEEc
Confidence 1 0012233345566676554 112222 233456777776543322 111111111122269999999
Q ss_pred CCCCeEEEEeCCCcEEEEeCCCCCCCCCceeeecCCCCCeEEEEEcCCCCeEEEEecCCcEEEEeCCC
Q 048012 309 CDGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHSDDITALKFSSDGRILLSRSFDGSLKVWDLRK 376 (616)
Q Consensus 309 p~g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~v~lwd~~~ 376 (616)
.+|++++.|+.||.|-|++..+. ........+|...|+.|.|+||.+++++.+.|.+..|.-+.-
T Consensus 291 ~dGkf~AlGT~dGsVai~~~~~l---q~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 291 DDGKFLALGTMDGSVAIYDAKSL---QRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred CCCcEEEEeccCCcEEEEEecee---eeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence 99999999999999999998863 345556689999999999999999999999999988887753
No 195
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.71 E-value=7.3e-16 Score=144.04 Aligned_cols=278 Identities=13% Similarity=0.172 Sum_probs=182.0
Q ss_pred CEEEEEEcCCcEEEEeCCCCccccccceecCCCCCCceEEEEecC--CCCeEEEEeCCCeEEEEECCCCeeeeEeeCcee
Q 048012 162 SRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSP--TSDRFLCVTGSAQAKIYDRDGLTLGEFVKGDMY 239 (616)
Q Consensus 162 ~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp--~g~~l~~~s~d~~v~vwd~~~~~~~~~~~~~~~ 239 (616)
..+|++...|.|++||..++ ..+..++ .+...+..+.|.. ....+++++.||.|++||+....-.
T Consensus 41 ~~vav~lSngsv~lyd~~tg-~~l~~fk----~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~-------- 107 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTG-QLLEEFK----GPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAES-------- 107 (376)
T ss_pred eeEEEEecCCeEEEEeccch-hhhheec----CCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhh--------
Confidence 57888999999999998873 2333332 3344467788866 4567899999999999998754321
Q ss_pred EeecccCCCcc-cceEEEEEcCCCCCEEEEEe----CCCCEEEEECCCccc-cceEEeeeccCCCCccEEEEEECC-CCC
Q 048012 240 IRDLKNTKGHI-CGLTCGEWHPKTKETILTSS----EDGSLRIWDVNEFKS-QKQVIKPKLARPGRVAVTTCAWDC-DGK 312 (616)
Q Consensus 240 ~~~~~~~~~h~-~~v~~~~~~p~~~~~l~s~s----~Dg~v~iwd~~~~~~-~~~~~~~~~~~~~~~~v~~~~~sp-~g~ 312 (616)
.......|. ....|++.+... +++++|. .+-.|.+||++..++ +..+. ..|...|+++.|+| +.+
T Consensus 108 --a~~~~~~~~~~~f~~ld~nck~-~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~-----eSH~DDVT~lrFHP~~pn 179 (376)
T KOG1188|consen 108 --ARISWTQQSGTPFICLDLNCKK-NIIACGTELTRSDASVVLWDVRSEQQLLRQLN-----ESHNDDVTQLRFHPSDPN 179 (376)
T ss_pred --hheeccCCCCCcceEeeccCcC-CeEEeccccccCceEEEEEEeccccchhhhhh-----hhccCcceeEEecCCCCC
Confidence 111233443 466777766544 5777764 367799999997665 33222 34556899999999 567
Q ss_pred eEEEEeCCCcEEEEeCCCCCCCCCceeeecCCCCCeEEEEEcCCC-CeEEEEecCCcEEEEeCCCCCCcceEecCC----
Q 048012 313 CIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHSDDITALKFSSDG-RILLSRSFDGSLKVWDLRKMKEPLKVFEDL---- 387 (616)
Q Consensus 313 ~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~spdg-~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~---- 387 (616)
+|++|+.||.|.|||+...... ..+.....|...|.++.|..++ +.|.+-+...+..+|++..+.... .+...
T Consensus 180 lLlSGSvDGLvnlfD~~~d~Ee-DaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~-~~~~~~~~~ 257 (376)
T KOG1188|consen 180 LLLSGSVDGLVNLFDTKKDNEE-DALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEET-WLENPDVSA 257 (376)
T ss_pred eEEeecccceEEeeecCCCcch-hhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhh-cccCccchh
Confidence 9999999999999999865222 2233334577889999999877 457788889999999998765322 11111
Q ss_pred -------CCCCcceeEEECCCCCEEEEeeccccccCCCceEEEE---eCCCC---ceEEEEecCCCCCeEEEEEcCCCCc
Q 048012 388 -------PNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFY---DREKL---ELVSRVGISPACSVVQCAWHPKLNQ 454 (616)
Q Consensus 388 -------~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iw---d~~~~---~~~~~~~~~~~~~v~~~~~~p~~~~ 454 (616)
...+ +...-...+...++.++. .-|...++ |..++ +.+..+...|..-|.++.|...+..
T Consensus 258 ~d~r~~~~~dY-~I~~~~~~~~~~~~l~g~------~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~ 330 (376)
T KOG1188|consen 258 DDLRKEDNCDY-VINEHSPGDKDTCALAGT------DSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDV 330 (376)
T ss_pred hhHHhhhhhhh-eeecccCCCcceEEEecc------ccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccce
Confidence 0111 111111223444444441 23333333 33333 3444455445567889999999889
Q ss_pred EEEEeccCCCCceEEEecc
Q 048012 455 IFATAGDKSQGGTHILYDP 473 (616)
Q Consensus 455 l~~~~~d~~~~~~~~v~~~ 473 (616)
+++|+. ++.+.+|..
T Consensus 331 l~TGGE----DG~l~~Wk~ 345 (376)
T KOG1188|consen 331 LYTGGE----DGLLQAWKV 345 (376)
T ss_pred eeccCC----CceEEEEec
Confidence 998887 789999984
No 196
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.71 E-value=1.2e-14 Score=151.77 Aligned_cols=323 Identities=13% Similarity=0.124 Sum_probs=223.0
Q ss_pred EEEEEECCCCCEEEEEEcCCcEEEEeCCCCccccccceecCCCCCCceEEEEecCCCCeEEEEeCCCeEEEEECCCCeee
Q 048012 152 VSALAVDHSGSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSDRFLCVTGSAQAKIYDRDGLTLG 231 (616)
Q Consensus 152 V~~v~~sp~g~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~s~d~~v~vwd~~~~~~~ 231 (616)
=.+|.+++.|.+.+.. .+..+.+|++.... .....+.....|...+++.++||++++++++..+|+|.+|.--+....
T Consensus 163 ~~~I~~~~~ge~~~i~-~~~~~~~~~v~~~~-~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~ 240 (792)
T KOG1963|consen 163 PKSIVDNNSGEFKGIV-HMCKIHIYFVPKHT-KHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDD 240 (792)
T ss_pred CccEEEcCCceEEEEE-EeeeEEEEEecccc-eeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccc
Confidence 4577888888766554 45678999987644 223333344445556899999999999999999999999985441110
Q ss_pred eEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEEEECCCccccceEEeeeccCCCCccEEEEEECCCC
Q 048012 232 EFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWDCDG 311 (616)
Q Consensus 232 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g 311 (616)
. .....+.-|...|+++.|+++| .+|++|+..|.+.+|.+.+++ ++++.... ..|..+.++|++
T Consensus 241 ~--------~t~t~lHWH~~~V~~L~fS~~G-~~LlSGG~E~VLv~Wq~~T~~--kqfLPRLg-----s~I~~i~vS~ds 304 (792)
T KOG1963|consen 241 S--------ETCTLLHWHHDEVNSLSFSSDG-AYLLSGGREGVLVLWQLETGK--KQFLPRLG-----SPILHIVVSPDS 304 (792)
T ss_pred c--------ccceEEEecccccceeEEecCC-ceEeecccceEEEEEeecCCC--cccccccC-----CeeEEEEEcCCC
Confidence 0 1133456789999999999998 499999999999999999876 33332221 279999999999
Q ss_pred CeEEEEeCCCcEEEEeCCCCCCCCCceeee--------cCCCCCeEEEEEcCCCCeEEEEecCCcEEEEeCCCCCCcceE
Q 048012 312 KCIAGGIGDGSIQVWNLKPGWGSRPDIHVE--------KGHSDDITALKFSSDGRILLSRSFDGSLKVWDLRKMKEPLKV 383 (616)
Q Consensus 312 ~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~--------~~h~~~V~~l~~spdg~~l~s~s~Dg~v~lwd~~~~~~~~~~ 383 (616)
.+.+....|..|.+....+.. ....+..+ ....+-.+.++++|.-+.++-.+..|.|.+||+.+.....+.
T Consensus 305 ~~~sl~~~DNqI~li~~~dl~-~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i~~~ 383 (792)
T KOG1963|consen 305 DLYSLVLEDNQIHLIKASDLE-IKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTIYKL 383 (792)
T ss_pred CeEEEEecCceEEEEeccchh-hhhhccCccCCCccccccccccceeEEEcCCCCceeecCCCceEEEEeccccceeeeE
Confidence 999999999999999875431 11111111 112445788999997788888999999999999875432221
Q ss_pred --ecCCC------CCCcceeEEECCCCCEEEEeec-cccccCCC--ceEEEEeC----CCCceEEEEecCCCCCeEEEEE
Q 048012 384 --FEDLP------NNYAQTNVAFSPDEQLFLTGTS-VERESTTG--GLLCFYDR----EKLELVSRVGISPACSVVQCAW 448 (616)
Q Consensus 384 --~~~~~------~~~~v~~v~fspdg~~l~~gs~-~~~~~~~d--g~i~iwd~----~~~~~~~~~~~~~~~~v~~~~~ 448 (616)
..... ....++.++++-.|.+++|.-. .+.....| -.+++|-. .+..+...+..+|+..+....+
T Consensus 384 ~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~ 463 (792)
T KOG1963|consen 384 QVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHGNAFVATIF 463 (792)
T ss_pred EEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEEecCCCceeEEEEE
Confidence 11111 1124678888888999999863 12222233 46888964 4566777777778765555444
Q ss_pred -cCCCC-cEEEEeccCCCCceEEEec-----------------------------ccCCCCCcEEEEecCCcceeccccc
Q 048012 449 -HPKLN-QIFATAGDKSQGGTHILYD-----------------------------PRLSERGALVCVARAPRKKSVDDFE 497 (616)
Q Consensus 449 -~p~~~-~l~~~~~d~~~~~~~~v~~-----------------------------~~~s~~g~~l~s~~~d~~~~~wd~~ 497 (616)
++... ..++++. ++..+||. +.||.||.+|+. +.+.++.+||+.
T Consensus 464 ~~~~rs~~~vta~~----dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs~dGslla~-s~~~~Itiwd~~ 538 (792)
T KOG1963|consen 464 LNPTRSVRCVTASV----DGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCFSQDGSLLAV-SFDDTITIWDYD 538 (792)
T ss_pred ecCcccceeEEecc----CCeEEEEEEecccccCcCccceEEeeeeccccCcccchhhcCCCcEEEE-ecCCEEEEecCC
Confidence 44433 4555555 67777777 458899966655 488999999986
Q ss_pred C
Q 048012 498 V 498 (616)
Q Consensus 498 ~ 498 (616)
.
T Consensus 539 ~ 539 (792)
T KOG1963|consen 539 T 539 (792)
T ss_pred C
Confidence 5
No 197
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.71 E-value=9.5e-15 Score=152.50 Aligned_cols=331 Identities=15% Similarity=0.119 Sum_probs=219.9
Q ss_pred cCCcccEEEEEECCCCCEEEEEEcCCcEEEEeCCCCccccccceecCCCCCCceEEEEecCCCCeEEEEeCCCeEEEEEC
Q 048012 146 KGHTKIVSALAVDHSGSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSDRFLCVTGSAQAKIYDR 225 (616)
Q Consensus 146 ~~H~~~V~~v~~sp~g~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~s~d~~v~vwd~ 225 (616)
..|+..++|+++||+++++|+|..||.|.+|.--+... ...-.....-|...|.+++|+++|.+|++|+..+.+.+|.+
T Consensus 202 ~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~-~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~ 280 (792)
T KOG1963|consen 202 VHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSD-DSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQL 280 (792)
T ss_pred hhhcccceeEEeccccceEEEeccCCcEEEEecccccc-ccccceEEEecccccceeEEecCCceEeecccceEEEEEee
Confidence 36888899999999999999999999999996432110 11111222235667999999999999999999999999999
Q ss_pred CCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEEEECCCccccceEEeeecc-----CCCCc
Q 048012 226 DGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLA-----RPGRV 300 (616)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~-----~~~~~ 300 (616)
.+.. .+| +..-.+.|..+.++|++ .+.+....|..|.+....+......+...... ...+.
T Consensus 281 ~T~~-kqf------------LPRLgs~I~~i~vS~ds-~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~ 346 (792)
T KOG1963|consen 281 ETGK-KQF------------LPRLGSPILHIVVSPDS-DLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQS 346 (792)
T ss_pred cCCC-ccc------------ccccCCeeEEEEEcCCC-CeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccc
Confidence 9776 232 45566789999999988 57777888999999887654433333222111 11233
Q ss_pred cEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCCCCCceeee-c------CCCCCeEEEEEcCCCCeEEEEe--------c
Q 048012 301 AVTTCAWDCDGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVE-K------GHSDDITALKFSSDGRILLSRS--------F 365 (616)
Q Consensus 301 ~v~~~~~sp~g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~-~------~h~~~V~~l~~spdg~~l~s~s--------~ 365 (616)
-.+.++++|.-+.++-.+..|.|++||+-+........... . .+.-.|++++.+..|++++|.- .
T Consensus 347 l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~ 426 (792)
T KOG1963|consen 347 LTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFF 426 (792)
T ss_pred cceeEEEcCCCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhcc
Confidence 56788999988888888899999999998753221111111 1 1223478888888999999874 2
Q ss_pred CC--cEEEEeCCCCCC--cceEecCCCCCCcceeEEEC-CCCC-EEEEeeccccccCCCceEEEEeCCCCce--------
Q 048012 366 DG--SLKVWDLRKMKE--PLKVFEDLPNNYAQTNVAFS-PDEQ-LFLTGTSVERESTTGGLLCFYDREKLEL-------- 431 (616)
Q Consensus 366 Dg--~v~lwd~~~~~~--~~~~~~~~~~~~~v~~v~fs-pdg~-~l~~gs~~~~~~~~dg~i~iwd~~~~~~-------- 431 (616)
|| .+++|-...... .+.+.-..+|...+...+|. +... ..++++ .||.++||-+...+.
T Consensus 427 ~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~-------~dg~~KiW~~~~~~n~~k~~s~W 499 (792)
T KOG1963|consen 427 DGEVSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTAS-------VDGDFKIWVFTDDSNIYKKSSNW 499 (792)
T ss_pred CceEEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEec-------cCCeEEEEEEecccccCcCccce
Confidence 33 478897653222 12222234455444444443 3333 778887 899999999843321
Q ss_pred -EEEEecCCCCCeEEEEEcCCCCcEEEEeccCCCCceEEEecccC-CC----C-------------C----cEEEEecCC
Q 048012 432 -VSRVGISPACSVVQCAWHPKLNQIFATAGDKSQGGTHILYDPRL-SE----R-------------G----ALVCVARAP 488 (616)
Q Consensus 432 -~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~~~~~~~v~~~~~-s~----~-------------g----~~l~s~~~d 488 (616)
...+..-+..++..++|+.+|..|+++. +.++.+|+..- .. - + ...+.....
T Consensus 500 ~c~~i~sy~k~~i~a~~fs~dGslla~s~-----~~~Itiwd~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 574 (792)
T KOG1963|consen 500 TCKAIGSYHKTPITALCFSQDGSLLAVSF-----DDTITIWDYDTKNELLCTEGSRNWPIAELLFTAQTQNDGALVHATQ 574 (792)
T ss_pred EEeeeeccccCcccchhhcCCCcEEEEec-----CCEEEEecCCChhhhhccccccccchHhHhhhcccccccceeeccC
Confidence 1122222567899999999997777666 66899999664 10 0 0 011222344
Q ss_pred cceecccccCCceee
Q 048012 489 RKKSVDDFEVAPVIH 503 (616)
Q Consensus 489 ~~~~~wd~~~~~~~~ 503 (616)
+.+.+|++....+++
T Consensus 575 ~~l~~WNll~~~l~w 589 (792)
T KOG1963|consen 575 QRLSVWNLLSMSLIW 589 (792)
T ss_pred ceEehHhhhhhheec
Confidence 677889987666666
No 198
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.70 E-value=2.5e-15 Score=144.61 Aligned_cols=198 Identities=18% Similarity=0.296 Sum_probs=149.2
Q ss_pred EEEEEcCCCCCEEEEEeCCCCEEEEECCCccccceEEeeeccCCCCccEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCC
Q 048012 254 TCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWDCDGKCIAGGIGDGSIQVWNLKPGWG 333 (616)
Q Consensus 254 ~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~g~~dg~I~iwd~~~~~~ 333 (616)
.+++|+.++ ..+++++.||++|||+..+....... ..|+..|.++.|+|||++|++-+.| ..+||+.+++
T Consensus 148 k~vaf~~~g-s~latgg~dg~lRv~~~Ps~~t~l~e------~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g-- 217 (398)
T KOG0771|consen 148 KVVAFNGDG-SKLATGGTDGTLRVWEWPSMLTILEE------IAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTG-- 217 (398)
T ss_pred eEEEEcCCC-CEeeeccccceEEEEecCcchhhhhh------HhhcCccccceeCCCCcEEEEecCC-ceEEEEeccC--
Confidence 788999987 59999999999999997665444333 2455589999999999999999999 9999999987
Q ss_pred CCCceeeec--CCCCCeEEEEEcCCC-----CeEEEEecCCcEEEEeCCCCCC--cceEecCCCCCCcceeEEECCCCCE
Q 048012 334 SRPDIHVEK--GHSDDITALKFSSDG-----RILLSRSFDGSLKVWDLRKMKE--PLKVFEDLPNNYAQTNVAFSPDEQL 404 (616)
Q Consensus 334 ~~~~~~~~~--~h~~~V~~l~~spdg-----~~l~s~s~Dg~v~lwd~~~~~~--~~~~~~~~~~~~~v~~v~fspdg~~ 404 (616)
..+.... .-......+.|+.|+ .+++....-+.|++||+..... .++..+.......|++++.|.+|++
T Consensus 218 --~~~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf 295 (398)
T KOG0771|consen 218 --AALARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKF 295 (398)
T ss_pred --chhhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcE
Confidence 2333332 222346778888877 3333344456677777654322 1122222222335999999999999
Q ss_pred EEEeeccccccCCCceEEEEeCCCCceEEEEecCCCCCeEEEEEcCCCCcEEEEeccCCCCceEEEeccc
Q 048012 405 FLTGTSVERESTTGGLLCFYDREKLELVSRVGISPACSVVQCAWHPKLNQIFATAGDKSQGGTHILYDPR 474 (616)
Q Consensus 405 l~~gs~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~~~~~~~v~~~~ 474 (616)
++.|+ .+|.|.|++..+.++++.++..|...|+.+.|+|+.++++..+. ++...|..++
T Consensus 296 ~AlGT-------~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs----~~~~~v~~l~ 354 (398)
T KOG0771|consen 296 LALGT-------MDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSS----DNEAAVTKLA 354 (398)
T ss_pred EEEec-------cCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCccccccc----CCceeEEEEe
Confidence 99999 89999999999999999998888899999999999999988776 5666666554
No 199
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.70 E-value=1.2e-15 Score=160.09 Aligned_cols=237 Identities=22% Similarity=0.299 Sum_probs=157.1
Q ss_pred CCcEEEEeCCCCccccccceecCCCCCCceEEEEecCCCCeEEEEeCC---CeEEEEECCCCeeeeEeeCceeEeecccC
Q 048012 170 DYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSDRFLCVTGS---AQAKIYDRDGLTLGEFVKGDMYIRDLKNT 246 (616)
Q Consensus 170 Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~s~d---~~v~vwd~~~~~~~~~~~~~~~~~~~~~~ 246 (616)
+..|++||..+... +. ...+...+.++.|||+|++|+.++.+ ..|++||+.++.... +...
T Consensus 183 ~~~i~i~d~dg~~~-----~~-lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~----------l~~~ 246 (429)
T PRK01742 183 PYEVRVADYDGFNQ-----FI-VNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKV----------VASF 246 (429)
T ss_pred eEEEEEECCCCCCc-----eE-eccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEE----------EecC
Confidence 47899999876431 11 22345579999999999999988754 479999998664321 2223
Q ss_pred CCcccceEEEEEcCCCCCEEEEEeCCCCEEEE--ECCCccccceEEeeeccCCCCccEEEEEECCCCCeEEEEe-CCCcE
Q 048012 247 KGHICGLTCGEWHPKTKETILTSSEDGSLRIW--DVNEFKSQKQVIKPKLARPGRVAVTTCAWDCDGKCIAGGI-GDGSI 323 (616)
Q Consensus 247 ~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iw--d~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~g~-~dg~I 323 (616)
.+|. ..++|+|++..++++.+.+|.+.|| |+.++. ...+. .+...+...+|+|+|+.|+..+ .+|.+
T Consensus 247 ~g~~---~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~-~~~lt------~~~~~~~~~~wSpDG~~i~f~s~~~g~~ 316 (429)
T PRK01742 247 RGHN---GAPAFSPDGSRLAFASSKDGVLNIYVMGANGGT-PSQLT------SGAGNNTEPSWSPDGQSILFTSDRSGSP 316 (429)
T ss_pred CCcc---CceeECCCCCEEEEEEecCCcEEEEEEECCCCC-eEeec------cCCCCcCCEEECCCCCEEEEEECCCCCc
Confidence 3443 3579999986445555678876666 554432 11111 1223577899999999777655 57888
Q ss_pred EEEeCCCCCCCCCceeeecCCCCCeEEEEEcCCCCeEEEEecCCcEEEEeCCCCCCcceEecCCCCCCcceeEEECCCCC
Q 048012 324 QVWNLKPGWGSRPDIHVEKGHSDDITALKFSSDGRILLSRSFDGSLKVWDLRKMKEPLKVFEDLPNNYAQTNVAFSPDEQ 403 (616)
Q Consensus 324 ~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~v~~v~fspdg~ 403 (616)
+||++.... .....+ .+.. .++.|+|||++|+..+.++ +.+||+.++.. . .+... ....++.|+|||+
T Consensus 317 ~I~~~~~~~---~~~~~l-~~~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~-~-~lt~~---~~~~~~~~sPdG~ 384 (429)
T PRK01742 317 QVYRMSASG---GGASLV-GGRG--YSAQISADGKTLVMINGDN-VVKQDLTSGST-E-VLSST---FLDESPSISPNGI 384 (429)
T ss_pred eEEEEECCC---CCeEEe-cCCC--CCccCCCCCCEEEEEcCCC-EEEEECCCCCe-E-EecCC---CCCCCceECCCCC
Confidence 888875431 112222 3433 4678999999999888765 56699986542 2 22111 1245688999999
Q ss_pred EEEEeeccccccCCCceEEEEeC--CCCceEEEEecCCCCCeEEEEEcCCC
Q 048012 404 LFLTGTSVERESTTGGLLCFYDR--EKLELVSRVGISPACSVVQCAWHPKL 452 (616)
Q Consensus 404 ~l~~gs~~~~~~~~dg~i~iwd~--~~~~~~~~~~~~~~~~v~~~~~~p~~ 452 (616)
+|+.++ .++.+.+|.+ .++..++.+.. +.+.+..++|+|-.
T Consensus 385 ~i~~~s-------~~g~~~~l~~~~~~G~~~~~l~~-~~g~~~~p~wsp~~ 427 (429)
T PRK01742 385 MIIYSS-------TQGLGKVLQLVSADGRFKARLPG-SDGQVKFPAWSPYL 427 (429)
T ss_pred EEEEEE-------cCCCceEEEEEECCCCceEEccC-CCCCCCCcccCCCC
Confidence 999998 6676777764 46777777753 55678889999863
No 200
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.69 E-value=5.7e-14 Score=130.46 Aligned_cols=239 Identities=13% Similarity=0.200 Sum_probs=156.2
Q ss_pred EEEEECCCCCEEEEEEcCCcEEEEeCCCCccccccceecCCCCCCceEEEEecCCCCeEEEEeC-C------CeEEEEEC
Q 048012 153 SALAVDHSGSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSDRFLCVTG-S------AQAKIYDR 225 (616)
Q Consensus 153 ~~v~~sp~g~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~s~-d------~~v~vwd~ 225 (616)
..++|+.|...++.|..+| .|||+.+..... ........+-.+.-+-| ..++|+.+++ + +.|.|||-
T Consensus 9 lsvs~NQD~ScFava~~~G-friyn~~P~ke~---~~r~~~~~G~~~veMLf--R~N~laLVGGg~~pky~pNkviIWDD 82 (346)
T KOG2111|consen 9 LSVSFNQDHSCFAVATDTG-FRIYNCDPFKES---ASRQFIDGGFKIVEMLF--RSNYLALVGGGSRPKYPPNKVIIWDD 82 (346)
T ss_pred eEEEEccCCceEEEEecCc-eEEEecCchhhh---hhhccccCchhhhhHhh--hhceEEEecCCCCCCCCCceEEEEec
Confidence 3489999998888887666 899998753211 11111111112222222 3345554443 3 48999993
Q ss_pred C-CCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEEEECCCc-cccceEEeeeccCCCCccEE
Q 048012 226 D-GLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEF-KSQKQVIKPKLARPGRVAVT 303 (616)
Q Consensus 226 ~-~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~-~~~~~~~~~~~~~~~~~~v~ 303 (616)
. ...+.+ .....+|.++.+.++ .|++.- .+.|.||...+. +.+..+....... .+.
T Consensus 83 ~k~~~i~e--------------l~f~~~I~~V~l~r~---riVvvl-~~~I~VytF~~n~k~l~~~et~~NPk----GlC 140 (346)
T KOG2111|consen 83 LKERCIIE--------------LSFNSEIKAVKLRRD---RIVVVL-ENKIYVYTFPDNPKLLHVIETRSNPK----GLC 140 (346)
T ss_pred ccCcEEEE--------------EEeccceeeEEEcCC---eEEEEe-cCeEEEEEcCCChhheeeeecccCCC----ceE
Confidence 2 222222 234567899999874 444443 578999998743 3333332221111 233
Q ss_pred EEEECCCCCeEEE-EeCCCcEEEEeCCCCCCCCCceeeecCCCCCeEEEEEcCCCCeEEEEecCCc-EEEEeCCCCCCcc
Q 048012 304 TCAWDCDGKCIAG-GIGDGSIQVWNLKPGWGSRPDIHVEKGHSDDITALKFSSDGRILLSRSFDGS-LKVWDLRKMKEPL 381 (616)
Q Consensus 304 ~~~~sp~g~~l~~-g~~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~-v~lwd~~~~~~~~ 381 (616)
+++-+-+..+||. |-.-|.|+|-|+.... ........+|.+.|.||+.+-+|.+|||+|..|+ |||||..++.. +
T Consensus 141 ~~~~~~~k~~LafPg~k~GqvQi~dL~~~~--~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~-l 217 (346)
T KOG2111|consen 141 SLCPTSNKSLLAFPGFKTGQVQIVDLASTK--PNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTL-L 217 (346)
T ss_pred eecCCCCceEEEcCCCccceEEEEEhhhcC--cCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcE-e
Confidence 3332223334443 4567999999998641 1134678999999999999999999999999998 79999997654 5
Q ss_pred eEecCCCCCCcceeEEECCCCCEEEEeeccccccCCCceEEEEeCCCC
Q 048012 382 KVFEDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREKL 429 (616)
Q Consensus 382 ~~~~~~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~~ 429 (616)
+.+..-.....|.+++|||+..+|++++ ..|+|+||.++..
T Consensus 218 ~E~RRG~d~A~iy~iaFSp~~s~LavsS-------dKgTlHiF~l~~~ 258 (346)
T KOG2111|consen 218 QELRRGVDRADIYCIAFSPNSSWLAVSS-------DKGTLHIFSLRDT 258 (346)
T ss_pred eeeecCCchheEEEEEeCCCccEEEEEc-------CCCeEEEEEeecC
Confidence 5555445556799999999999999999 8999999997653
No 201
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.69 E-value=2.6e-15 Score=142.19 Aligned_cols=283 Identities=12% Similarity=0.127 Sum_probs=196.7
Q ss_pred CCCCceEEEEecCCCCeEEEEeCCCeEEEEECCCCeeeeEeeCceeEeeccc-CCCcccceEEEEEcCCCCCEEEEEeCC
Q 048012 194 SEGHQVRNLSWSPTSDRFLCVTGSAQAKIYDRDGLTLGEFVKGDMYIRDLKN-TKGHICGLTCGEWHPKTKETILTSSED 272 (616)
Q Consensus 194 ~~~~~v~~l~~sp~g~~l~~~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~-~~~h~~~v~~~~~~p~~~~~l~s~s~D 272 (616)
.|.+.|.+|.|+.++++|++|+.|..++||+++..-..... +++.. -..|.+.|.|++|...+ ..|++|..+
T Consensus 54 ~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~------KPI~~~~~~H~SNIF~L~F~~~N-~~~~SG~~~ 126 (609)
T KOG4227|consen 54 EHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTP------KPIGVMEHPHRSNIFSLEFDLEN-RFLYSGERW 126 (609)
T ss_pred hhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCC------CCceeccCccccceEEEEEccCC-eeEecCCCc
Confidence 56778999999999999999999999999998744322111 11221 23466899999999855 689999999
Q ss_pred CCEEEEECCCccccceEEeeeccCCCCccEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCCCCCceeeec-CCCCCeEEE
Q 048012 273 GSLRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWDCDGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEK-GHSDDITAL 351 (616)
Q Consensus 273 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~-~h~~~V~~l 351 (616)
++|.+.|+.+.+.+..+ .....++.|..+..+|..+.|++.+.+|.|.+||++.. ..+.-..+. ......+++
T Consensus 127 ~~VI~HDiEt~qsi~V~----~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~--~~~~~~~~~AN~~~~F~t~ 200 (609)
T KOG4227|consen 127 GTVIKHDIETKQSIYVA----NENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDR--QNPISLVLPANSGKNFYTA 200 (609)
T ss_pred ceeEeeecccceeeeee----cccCcccceeecccCCCCceEEEEecCceEEEEeccCC--CCCCceeeecCCCccceee
Confidence 99999999876544332 22234558999999999999999999999999999875 212222222 234567899
Q ss_pred EEcC-CCCeEEEEecCCcEEEEeCCCCCCcceEec---CCCC-CCcceeEEECCCCCEEEEeeccccccCCCceEEEEeC
Q 048012 352 KFSS-DGRILLSRSFDGSLKVWDLRKMKEPLKVFE---DLPN-NYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDR 426 (616)
Q Consensus 352 ~~sp-dg~~l~s~s~Dg~v~lwd~~~~~~~~~~~~---~~~~-~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~ 426 (616)
.|+| ...+|++.+..+-+-|||++....++..+. .++. .....++.|+|.|..+++-- ....-.+||+
T Consensus 201 ~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiR-------R~~~P~~~D~ 273 (609)
T KOG4227|consen 201 EFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIR-------RGKCPLYFDF 273 (609)
T ss_pred eecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhh-------ccCCCEEeee
Confidence 9999 456888888899999999998665544332 2222 22346789999999888765 4445567887
Q ss_pred CCCce-EEEEecCCC-----CCeEEEEEcCCCCcEEEEeccC--------------------------------------
Q 048012 427 EKLEL-VSRVGISPA-----CSVVQCAWHPKLNQIFATAGDK-------------------------------------- 462 (616)
Q Consensus 427 ~~~~~-~~~~~~~~~-----~~v~~~~~~p~~~~l~~~~~d~-------------------------------------- 462 (616)
....+ +.++..... ..+.+|+|--+.. |++|+.+-
T Consensus 274 ~S~R~~V~k~D~N~~GY~N~~T~KS~~F~~D~~-v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~V 352 (609)
T KOG4227|consen 274 ISQRCFVLKSDHNPNGYCNIKTIKSMTFIDDYT-VATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTV 352 (609)
T ss_pred ecccceeEeccCCCCcceeeeeeeeeeeeccee-eeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEE
Confidence 76443 333322221 2455667766533 44444321
Q ss_pred CCCceEEEecccCCCCCcEEEEecCCcceeccccc
Q 048012 463 SQGGTHILYDPRLSERGALVCVARAPRKKSVDDFE 497 (616)
Q Consensus 463 ~~~~~~~v~~~~~s~~g~~l~s~~~d~~~~~wd~~ 497 (616)
+.||..++..+.|+|...+||+.+..+.+++|.-.
T Consensus 353 LrGHRSv~NQVRF~~H~~~l~SSGVE~~~KlWS~~ 387 (609)
T KOG4227|consen 353 LRGHRSVPNQVRFSQHNNLLVSSGVENSFKLWSDH 387 (609)
T ss_pred EecccccccceeecCCcceEeccchhhheeccccc
Confidence 23444455557788888899999888888888753
No 202
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.69 E-value=2.4e-14 Score=127.79 Aligned_cols=279 Identities=18% Similarity=0.201 Sum_probs=177.6
Q ss_pred ccEEEEEECCCCCEEEEEEcCCcEEEEeCCCCccc-----cccceecCCCCCCceEEEEecCCCCeEEEEeCCCeEEEEE
Q 048012 150 KIVSALAVDHSGSRVLSGSYDYTVRMYDFQGMNSR-----LQSFRQLEPSEGHQVRNLSWSPTSDRFLCVTGSAQAKIYD 224 (616)
Q Consensus 150 ~~V~~v~~sp~g~~lasgs~Dg~i~iwd~~~~~~~-----~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~s~d~~v~vwd 224 (616)
..|.+-+++|.+++|+.|..+|+|.+..++..... -+........|..+|+.++|. +.++..++||.|+-|.
T Consensus 11 ~tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~---d~~Lls~gdG~V~gw~ 87 (325)
T KOG0649|consen 11 NTVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH---DDFLLSGGDGLVYGWE 87 (325)
T ss_pred HHHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee---hhheeeccCceEEEee
Confidence 45667789999999999999999999998743211 111122235678899999998 3344466679999998
Q ss_pred CCCCeee-eEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEEEECCCccccceEEeeeccCCCCccEE
Q 048012 225 RDGLTLG-EFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPGRVAVT 303 (616)
Q Consensus 225 ~~~~~~~-~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~ 303 (616)
+...... .+...-....+++.-....-.|+++...|... -+++++.|+.++-||+++++....+ ++|...|.
T Consensus 88 W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~en-Si~~AgGD~~~y~~dlE~G~i~r~~------rGHtDYvH 160 (325)
T KOG0649|consen 88 WNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSEN-SILFAGGDGVIYQVDLEDGRIQREY------RGHTDYVH 160 (325)
T ss_pred ehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCC-cEEEecCCeEEEEEEecCCEEEEEE------cCCcceee
Confidence 7643210 00000000001111122334689999999775 4555568999999999998755544 46777899
Q ss_pred EEEECCCCCeEEEEeCCCcEEEEeCCCCCCCCCceeee---------cCC-CCCeEEEEEcCCCCeEEEEecCCcEEEEe
Q 048012 304 TCAWDCDGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVE---------KGH-SDDITALKFSSDGRILLSRSFDGSLKVWD 373 (616)
Q Consensus 304 ~~~~sp~g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~---------~~h-~~~V~~l~~spdg~~l~s~s~Dg~v~lwd 373 (616)
+++--.....+++|++||++||||++++. .+..+ +.| ..+|.+++.+ ..+|++|+ .-.+.||.
T Consensus 161 ~vv~R~~~~qilsG~EDGtvRvWd~kt~k----~v~~ie~yk~~~~lRp~~g~wigala~~--edWlvCGg-Gp~lslwh 233 (325)
T KOG0649|consen 161 SVVGRNANGQILSGAEDGTVRVWDTKTQK----HVSMIEPYKNPNLLRPDWGKWIGALAVN--EDWLVCGG-GPKLSLWH 233 (325)
T ss_pred eeeecccCcceeecCCCccEEEEeccccc----eeEEeccccChhhcCcccCceeEEEecc--CceEEecC-CCceeEEe
Confidence 99875555678999999999999999873 33222 223 2457777765 55787766 55799999
Q ss_pred CCCCCCcceEecCCCCCCcceeEEECCCCCEEEEeeccccccCCCceEEEEeCCCCceEEEEecCCCCCeEEEEEcCCCC
Q 048012 374 LRKMKEPLKVFEDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREKLELVSRVGISPACSVVQCAWHPKLN 453 (616)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~ 453 (616)
++.. .+..++.- ...+..+.|.. ..+++++ ..+.|.-|.+. |.+-..+.+.+ .......|+..--
T Consensus 234 Lrss-e~t~vfpi---pa~v~~v~F~~--d~vl~~G-------~g~~v~~~~l~-Gvl~a~ip~~s-~~c~s~s~~~~p~ 298 (325)
T KOG0649|consen 234 LRSS-ESTCVFPI---PARVHLVDFVD--DCVLIGG-------EGNHVQSYTLN-GVLQANIPVES-TACYSASWQTSPI 298 (325)
T ss_pred ccCC-CceEEEec---ccceeEeeeec--ceEEEec-------cccceeeeeec-cEEEEeccCCc-cceeeecccCCce
Confidence 9964 44555532 23366777753 4566665 67778878753 44444444432 2345556655444
Q ss_pred cEEEEec
Q 048012 454 QIFATAG 460 (616)
Q Consensus 454 ~l~~~~~ 460 (616)
.+++..+
T Consensus 299 k~~s~ag 305 (325)
T KOG0649|consen 299 KFISIAG 305 (325)
T ss_pred EEEEecc
Confidence 4444443
No 203
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.68 E-value=2.3e-16 Score=152.82 Aligned_cols=267 Identities=17% Similarity=0.206 Sum_probs=198.4
Q ss_pred cccEEEEEECCCCCEEEEEEcCCcEEEEeCCCCccccccceecCCCCCCceEEEEecCCCCeEEEEeCCCeEEEEECCCC
Q 048012 149 TKIVSALAVDHSGSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSDRFLCVTGSAQAKIYDRDGL 228 (616)
Q Consensus 149 ~~~V~~v~~sp~g~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~s~d~~v~vwd~~~~ 228 (616)
...-..+.|+.+|+.|+.|+.-|.|-.+|..++.-. ....-...|.++.|-.+.++++ +.....++|||-.+.
T Consensus 129 eFGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~------~Ei~v~Etv~Dv~~LHneq~~A-VAQK~y~yvYD~~Gt 201 (545)
T KOG1272|consen 129 EFGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLH------FEINVMETVRDVTFLHNEQFFA-VAQKKYVYVYDNNGT 201 (545)
T ss_pred ccCCeeeeecCCccEEEecCCccceeeeecccceee------eeeehhhhhhhhhhhcchHHHH-hhhhceEEEecCCCc
Confidence 344567899999999999999999999999875311 1111233488999988877766 556778999999988
Q ss_pred eeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEEEECCCccccceEEeeeccCCCCccEEEEEEC
Q 048012 229 TLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWD 308 (616)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 308 (616)
++..+ +. ...|..+.|.|.. .+|++++..|.++.-|+.+++.+..+.. ..+.+..++-+
T Consensus 202 ElHCl-------------k~-~~~v~rLeFLPyH-fLL~~~~~~G~L~Y~DVS~GklVa~~~t------~~G~~~vm~qN 260 (545)
T KOG1272|consen 202 ELHCL-------------KR-HIRVARLEFLPYH-FLLVAASEAGFLKYQDVSTGKLVASIRT------GAGRTDVMKQN 260 (545)
T ss_pred EEeeh-------------hh-cCchhhhcccchh-heeeecccCCceEEEeechhhhhHHHHc------cCCccchhhcC
Confidence 76432 22 2467889999975 6889999999999999999877665532 22257778889
Q ss_pred CCCCeEEEEeCCCcEEEEeCCCCCCCCCceeeecCCCCCeEEEEEcCCCCeEEEEecCCcEEEEeCCCCCCcceEecCCC
Q 048012 309 CDGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHSDDITALKFSSDGRILLSRSFDGSLKVWDLRKMKEPLKVFEDLP 388 (616)
Q Consensus 309 p~g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~ 388 (616)
|-+..+-+|...|+|.+|...+. ..+..+..|.++|.+|++.++|+|++|.+.|..|+|||+++...+.....
T Consensus 261 P~NaVih~GhsnGtVSlWSP~sk----ePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t--- 333 (545)
T KOG1272|consen 261 PYNAVIHLGHSNGTVSLWSPNSK----EPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRT--- 333 (545)
T ss_pred CccceEEEcCCCceEEecCCCCc----chHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeec---
Confidence 98899999999999999998754 56667778999999999999999999999999999999998775444433
Q ss_pred CCCcceeEEECCCCCEEEEeeccccccCCCceEEEEe-CCCCc-eEEE--EecCCCCCeEEEEEcCCCCcEEEEec
Q 048012 389 NNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYD-REKLE-LVSR--VGISPACSVVQCAWHPKLNQIFATAG 460 (616)
Q Consensus 389 ~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd-~~~~~-~~~~--~~~~~~~~v~~~~~~p~~~~l~~~~~ 460 (616)
......++||..| +||.+ .+..|.||. ...+. .... +...-.+.|..+.|.|-...|-+|..
T Consensus 334 -p~~a~~ls~Sqkg-lLA~~--------~G~~v~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH~ 399 (545)
T KOG1272|consen 334 -PHPASNLSLSQKG-LLALS--------YGDHVQIWKDALKGSGHGETPYMNHRCGGPVEDLRFCPYEDVLGIGHA 399 (545)
T ss_pred -CCCcccccccccc-ceeee--------cCCeeeeehhhhcCCCCCCcchhhhccCcccccceeccHHHeeecccc
Confidence 2337778888655 33433 567899996 22211 1111 11112357889999998777766665
No 204
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.68 E-value=5.5e-15 Score=137.13 Aligned_cols=247 Identities=17% Similarity=0.285 Sum_probs=179.7
Q ss_pred ecCCcccEEEEEECCCCCEEEEEEcCCcEEEEeCCCCccccccceecCCCCCCceEEEEecCCCCeEEEEeCCCeEEEEE
Q 048012 145 LKGHTKIVSALAVDHSGSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSDRFLCVTGSAQAKIYD 224 (616)
Q Consensus 145 l~~H~~~V~~v~~sp~g~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~s~d~~v~vwd 224 (616)
+.---.+|+|.+|++++..+|.+.....|.||...+.. ...... ....|...|+.|+|+|..++|++++.|...+||.
T Consensus 6 ~~~~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~-~w~~~h-tls~Hd~~vtgvdWap~snrIvtcs~drnayVw~ 83 (361)
T KOG1523|consen 6 FHRLLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGAD-LWEPAH-TLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWT 83 (361)
T ss_pred eeeccCceeeeeecCCCceEEeccCCceEEEEEecCCC-Cceece-ehhhhCcceeEEeecCCCCceeEccCCCCccccc
Confidence 33346799999999999999999999999999877532 122222 2334777899999999999999999999999999
Q ss_pred C-CCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEEEECCCccccceEEeeeccCCCCccEE
Q 048012 225 R-DGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPGRVAVT 303 (616)
Q Consensus 225 ~-~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~ 303 (616)
. .+.+. +....+..+...++++.|+|.+ +.|++|+.-..|.||-+.....-. + ..+.....+..|+
T Consensus 84 ~~~~~~W----------kptlvLlRiNrAAt~V~WsP~e-nkFAVgSgar~isVcy~E~ENdWW-V-sKhikkPirStv~ 150 (361)
T KOG1523|consen 84 QPSGGTW----------KPTLVLLRINRAATCVKWSPKE-NKFAVGSGARLISVCYYEQENDWW-V-SKHIKKPIRSTVT 150 (361)
T ss_pred cCCCCee----------ccceeEEEeccceeeEeecCcC-ceEEeccCccEEEEEEEeccccee-h-hhhhCCcccccee
Confidence 8 44442 2233356788899999999987 799999999999999876533211 1 1122234556899
Q ss_pred EEEECCCCCeEEEEeCCCcEEEEeC-----CC-----CCCCCCc----eeeecCCCCCeEEEEEcCCCCeEEEEecCCcE
Q 048012 304 TCAWDCDGKCIAGGIGDGSIQVWNL-----KP-----GWGSRPD----IHVEKGHSDDITALKFSSDGRILLSRSFDGSL 369 (616)
Q Consensus 304 ~~~~sp~g~~l~~g~~dg~I~iwd~-----~~-----~~~~~~~----~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~v 369 (616)
++.|+|++-+|++|+.|+.+|+|.. +. .+..+.. +..+....+.|..+.|+|+|+.|+-.+.|.++
T Consensus 151 sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v 230 (361)
T KOG1523|consen 151 SLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTV 230 (361)
T ss_pred eeeccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCce
Confidence 9999999999999999999999863 11 1111111 22223456789999999999999999999999
Q ss_pred EEEeCCCCCCcceEecCCCCCCcceeEEECCCCCEEEEe
Q 048012 370 KVWDLRKMKEPLKVFEDLPNNYAQTNVAFSPDEQLFLTG 408 (616)
Q Consensus 370 ~lwd~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~g 408 (616)
.+-|.....+.+..... ..-+..++.|-.+...+++|
T Consensus 231 ~~~da~~p~~~v~~~~~--~~lP~ls~~~ise~~vv~ag 267 (361)
T KOG1523|consen 231 SFVDAAGPSERVQSVAT--AQLPLLSVSWISENSVVAAG 267 (361)
T ss_pred EEeecCCCchhccchhh--ccCCceeeEeecCCceeecC
Confidence 99998765433333222 11446677776666555555
No 205
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.68 E-value=4.3e-15 Score=156.95 Aligned_cols=255 Identities=19% Similarity=0.233 Sum_probs=175.2
Q ss_pred ccEEEEEECC--CCCEEEEEEcCCcEEEEeCCCCc-ccc---cc---ceecCCCCCCceEEEEecCCCCeEEEEeCCCeE
Q 048012 150 KIVSALAVDH--SGSRVLSGSYDYTVRMYDFQGMN-SRL---QS---FRQLEPSEGHQVRNLSWSPTSDRFLCVTGSAQA 220 (616)
Q Consensus 150 ~~V~~v~~sp--~g~~lasgs~Dg~i~iwd~~~~~-~~~---~~---~~~~~~~~~~~v~~l~~sp~g~~l~~~s~d~~v 220 (616)
..|+.+.+-. |..+|++|+.||.||||+-.... ... .. +....+...+.=.-+.|.....+|++++.-..|
T Consensus 1110 t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~I 1189 (1387)
T KOG1517|consen 1110 TRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSI 1189 (1387)
T ss_pred CccceeeeecccchhheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEE
Confidence 3566666643 44689999999999999743211 111 11 111111122222567898888888888889999
Q ss_pred EEEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEEEECCCccccceEEeeeccCCCCc
Q 048012 221 KIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPGRV 300 (616)
Q Consensus 221 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~ 300 (616)
+|||.....+..- + ..+....|+++.-+-..+++|++|..||.||+||.+.......+... +.|..
T Consensus 1190 RIWDa~~E~~~~d---------i--P~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~---R~h~~ 1255 (1387)
T KOG1517|consen 1190 RIWDAHKEQVVAD---------I--PYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVY---REHND 1255 (1387)
T ss_pred EEEecccceeEee---------c--ccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceee---cccCC
Confidence 9999987654221 1 23455667777766556689999999999999998764432222111 22222
Q ss_pred --cEEEEEECCCCCe-EEEEeCCCcEEEEeCCCCCCCCCceeeecCCC---CCeEEEEEcCCCCeEEEEecCCcEEEEeC
Q 048012 301 --AVTTCAWDCDGKC-IAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHS---DDITALKFSSDGRILLSRSFDGSLKVWDL 374 (616)
Q Consensus 301 --~v~~~~~sp~g~~-l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~h~---~~V~~l~~spdg~~l~s~s~Dg~v~lwd~ 374 (616)
+|..+.+.++|-- |++|+.||.|++||++.. ..........|. +..+++..+++...+|+|+. +.|+||++
T Consensus 1256 ~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~--~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~ 1332 (1387)
T KOG1517|consen 1256 VEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMS--SKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSL 1332 (1387)
T ss_pred cccceeEEeecCCCcceeeeccCCeEEEEecccC--cccccceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEec
Confidence 3889999987765 999999999999999984 222233333443 35999999999999999998 99999998
Q ss_pred CCCCCcceEecCC-----CCCCcceeEEECCCCCEEEEeeccccccCCCceEEEEeCCCCc
Q 048012 375 RKMKEPLKVFEDL-----PNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREKLE 430 (616)
Q Consensus 375 ~~~~~~~~~~~~~-----~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~~~ 430 (616)
.... +..+... .....++|++|+|..-+|++|. .|..|.||......
T Consensus 1333 ~G~~--l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~-------~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1333 SGEQ--LNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGS-------ADSTVSIYSCEKPR 1384 (1387)
T ss_pred Chhh--hcccccCcccccCcCCCcceeeecchhHhhhhcc-------CCceEEEeecCCcC
Confidence 7422 2222211 1234579999999999999998 89999999876543
No 206
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.68 E-value=6e-16 Score=159.46 Aligned_cols=335 Identities=19% Similarity=0.240 Sum_probs=230.5
Q ss_pred CCCCceEEEEecCCCCeEEEEeCCCeEEEEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCC
Q 048012 194 SEGHQVRNLSWSPTSDRFLCVTGSAQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDG 273 (616)
Q Consensus 194 ~~~~~v~~l~~sp~g~~l~~~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg 273 (616)
+|-..|+|+.|...|.++++++.|..|+||..++.. .+....||.+.|+.++.+.++ .++++++.|.
T Consensus 188 gH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~------------~lAs~rGhs~ditdlavs~~n-~~iaaaS~D~ 254 (1113)
T KOG0644|consen 188 GHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETAR------------CLASCRGHSGDITDLAVSSNN-TMIAAASNDK 254 (1113)
T ss_pred hhhhheeeeeeccccceEeecCccceeeeeeccchh------------hhccCCCCccccchhccchhh-hhhhhcccCc
Confidence 466679999999999999999999999999987664 367789999999999998865 5899999999
Q ss_pred CEEEEECCCccccceEEeeeccCCCCccEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCCCCCce-eee-cCCCCCeEEE
Q 048012 274 SLRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWDCDGKCIAGGIGDGSIQVWNLKPGWGSRPDI-HVE-KGHSDDITAL 351 (616)
Q Consensus 274 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~g~~dg~I~iwd~~~~~~~~~~~-~~~-~~h~~~V~~l 351 (616)
.|++|-+..+..+..+ .+|.+.|++++|+|-. +.+.||++++||.+-. ....+ ... .....-+.++
T Consensus 255 vIrvWrl~~~~pvsvL------rghtgavtaiafsP~~----sss~dgt~~~wd~r~~--~~~y~prp~~~~~~~~~~s~ 322 (1113)
T KOG0644|consen 255 VIRVWRLPDGAPVSVL------RGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLE--PRIYVPRPLKFTEKDLVDSI 322 (1113)
T ss_pred eEEEEecCCCchHHHH------hccccceeeeccCccc----cCCCCCceEecccccc--ccccCCCCCCcccccceeee
Confidence 9999999887655433 4677799999999964 6788999999998821 11000 001 1122557888
Q ss_pred EEcCCCCeEEEEecCCcEEEEeCCCCCCcceEecCCCCCCcceeEEECCCC-CEEEEeeccccccCCCceEEEEeCCCCc
Q 048012 352 KFSSDGRILLSRSFDGSLKVWDLRKMKEPLKVFEDLPNNYAQTNVAFSPDE-QLFLTGTSVERESTTGGLLCFYDREKLE 430 (616)
Q Consensus 352 ~~spdg~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~v~~v~fspdg-~~l~~gs~~~~~~~~dg~i~iwd~~~~~ 430 (616)
.|...+.-++|++.|+.-..|.+.... .. .. .+.-+.++.+- .+.+++- .+-.+++|++.+|.
T Consensus 323 ~~~~~~~~f~Tgs~d~ea~n~e~~~l~-----~~--~~--~lif~t~ssd~~~~~~~ar-------~~~~~~vwnl~~g~ 386 (1113)
T KOG0644|consen 323 LFENNGDRFLTGSRDGEARNHEFEQLA-----WR--SN--LLIFVTRSSDLSSIVVTAR-------NDHRLCVWNLYTGQ 386 (1113)
T ss_pred eccccccccccccCCcccccchhhHhh-----hh--cc--ceEEEeccccccccceeee-------eeeEeeeeecccch
Confidence 999999999999999999888765311 00 00 01112222222 4555554 68889999999999
Q ss_pred eEEEEecCCCCCeEEEEEcCCCCcEEEEeccCCCCceEEEec-------------------ccCCCCCcEEEEecCCcce
Q 048012 431 LVSRVGISPACSVVQCAWHPKLNQIFATAGDKSQGGTHILYD-------------------PRLSERGALVCVARAPRKK 491 (616)
Q Consensus 431 ~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~~~~~~~v~~-------------------~~~s~~g~~l~s~~~d~~~ 491 (616)
+++.+.. |...+..+.+||-...|+...+- ++...||+ -+||++|..++.....+.+
T Consensus 387 l~H~l~g-hsd~~yvLd~Hpfn~ri~msag~---dgst~iwdi~eg~pik~y~~gh~kl~d~kFSqdgts~~lsd~hgql 462 (1113)
T KOG0644|consen 387 LLHNLMG-HSDEVYVLDVHPFNPRIAMSAGY---DGSTIIWDIWEGIPIKHYFIGHGKLVDGKFSQDGTSIALSDDHGQL 462 (1113)
T ss_pred hhhhhcc-cccceeeeeecCCCcHhhhhccC---CCceEeeecccCCcceeeecccceeeccccCCCCceEecCCCCCce
Confidence 8887754 66779999999988887776653 66777776 4589999988888777777
Q ss_pred ecccccC--------CceeeCCCCCCcccCChhh----HHHhhhhc--cC--CCCCCCC-CCCccCCCCCcccccCCCCc
Q 048012 492 SVDDFEV--------APVIHNPHALPLFRDQPSR----KRQREKLL--KD--PIKSHKP-EVPVTGPGHGGRVGASKGSL 554 (616)
Q Consensus 492 ~~wd~~~--------~~~~~~p~~~~l~~~~~~~----~~~~~~~~--~~--~~~~~~p-~~p~~~~~~~g~~~~~~~~~ 554 (616)
.|....- -...|..+-.|+.+...+- ..|..--+ .+ |.....| +.||..+..+++.++.
T Consensus 463 ~i~g~gqs~s~k~ak~dqffl~dyrplirdTn~~vldqeTq~~ph~~~p~~l~ds~~iphpe~yqtl~q~rr~sa~---- 538 (1113)
T KOG0644|consen 463 YILGTGQSKSQKKAKYDQFFLGDYRPLIRDTNGYVLDQETQLAPHRNPPDFLCDSDMIPHPEPYQTLFQGRRLSAL---- 538 (1113)
T ss_pred EEeccCCCccccccccceEeecCcccccccccchhhhhHhhhccccCCCCceeccCCCcCCchhhhcccccccchh----
Confidence 7766521 1266666777777765332 11111111 11 1112222 3567777777777764
Q ss_pred hhHHHHhhcCCccCcCCCcChHHHHHh
Q 048012 555 LTQYLLKQGGMIKETWMEEDPREAILK 581 (616)
Q Consensus 555 ~~~~~~~~~~~~~~~~~~~dpre~~l~ 581 (616)
-|+|.+++.+. .++..|-+.||.
T Consensus 539 --dh~mp~l~fia--~~~~E~e~~Vls 561 (1113)
T KOG0644|consen 539 --DHLMPPLEFIA--TMDWEPEEQVLS 561 (1113)
T ss_pred --hhcCCcccchh--hhccccchhhhh
Confidence 46666655443 233446666763
No 207
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.68 E-value=3.3e-14 Score=133.93 Aligned_cols=269 Identities=18% Similarity=0.198 Sum_probs=171.2
Q ss_pred cccEEEEEECCCCCEEEEEEcCCcEEEEeCCCCccccccceecCCCCCCceEEEEecCCCCeEEEEeCCCeEEEEECCCC
Q 048012 149 TKIVSALAVDHSGSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSDRFLCVTGSAQAKIYDRDGL 228 (616)
Q Consensus 149 ~~~V~~v~~sp~g~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~s~d~~v~vwd~~~~ 228 (616)
.-.+..++|++.-..+|++..|-+||+|+-+.. ....+.......|.|++|-|.+..-++.+.-+-|.||..+..
T Consensus 98 ~~dlr~~aWhqH~~~fava~nddvVriy~ksst-----~pt~Lks~sQrnvtclawRPlsaselavgCr~gIciW~~s~t 172 (445)
T KOG2139|consen 98 EIDLRGVAWHQHIIAFAVATNDDVVRIYDKSST-----CPTKLKSVSQRNVTCLAWRPLSASELAVGCRAGICIWSDSRT 172 (445)
T ss_pred hcceeeEeechhhhhhhhhccCcEEEEeccCCC-----CCceecchhhcceeEEEeccCCcceeeeeecceeEEEEcCcc
Confidence 345778899987778899999999999997652 222222334456999999998776666666677899987633
Q ss_pred eeeeEee--CceeEeecccCCCcccceEEEEEcCCCCCEEEEEe-CCCCEEEEECCCccccceEEeeeccCCCCccEEEE
Q 048012 229 TLGEFVK--GDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSS-EDGSLRIWDVNEFKSQKQVIKPKLARPGRVAVTTC 305 (616)
Q Consensus 229 ~~~~~~~--~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s-~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~ 305 (616)
....... +...-..+....+| ..|+++.|++++. .+++++ .|..|+|||..++.++.... .+-+.++-+
T Consensus 173 ln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt-~l~tAS~gsssi~iWdpdtg~~~pL~~------~glgg~slL 244 (445)
T KOG2139|consen 173 LNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGT-ILVTASFGSSSIMIWDPDTGQKIPLIP------KGLGGFSLL 244 (445)
T ss_pred cccccccccccccchhheeCCCC-ceeeEEEEcCCCC-EEeecccCcceEEEEcCCCCCcccccc------cCCCceeeE
Confidence 2211110 00001122334566 7899999999985 666665 56789999999876543321 122368889
Q ss_pred EECCCCCeEEEEeCCCcEEEEeCCCCCCCCCceeeecCCCCCeEEEEEcCCCCeEEEEecCCcEEEEeCCCCCCc-----
Q 048012 306 AWDCDGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHSDDITALKFSSDGRILLSRSFDGSLKVWDLRKMKEP----- 380 (616)
Q Consensus 306 ~~sp~g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~v~lwd~~~~~~~----- 380 (616)
.|+|+|.+|++++-|+..++|+....+ ... ...-..+.|...+|+|+|+.|+.... |.-+||.+.-..++
T Consensus 245 kwSPdgd~lfaAt~davfrlw~e~q~w---t~e-rw~lgsgrvqtacWspcGsfLLf~~s-gsp~lysl~f~~~~~~~~~ 319 (445)
T KOG2139|consen 245 KWSPDGDVLFAATCDAVFRLWQENQSW---TKE-RWILGSGRVQTACWSPCGSFLLFACS-GSPRLYSLTFDGEDSVFLR 319 (445)
T ss_pred EEcCCCCEEEEecccceeeeehhcccc---eec-ceeccCCceeeeeecCCCCEEEEEEc-CCceEEEEeecCCCccccC
Confidence 999999999999999999999766532 122 22223348999999999987765543 33345544321111
Q ss_pred ------ceEecCC------C----CCCcceeEEECCCCCEEEEeeccc-cccCCCceEEEEeCCCCceEEEE
Q 048012 381 ------LKVFEDL------P----NNYAQTNVAFSPDEQLFLTGTSVE-RESTTGGLLCFYDREKLELVSRV 435 (616)
Q Consensus 381 ------~~~~~~~------~----~~~~v~~v~fspdg~~l~~gs~~~-~~~~~dg~i~iwd~~~~~~~~~~ 435 (616)
+..+..+ . ..+.+.+++|.|.|.||++.-... ......+.|.+||....-.+.-.
T Consensus 320 ~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~vels 391 (445)
T KOG2139|consen 320 PQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPVELS 391 (445)
T ss_pred cccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCceEEE
Confidence 1111111 0 135578999999999999876210 00012345777887665544433
No 208
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.67 E-value=1.7e-14 Score=135.01 Aligned_cols=272 Identities=17% Similarity=0.299 Sum_probs=177.9
Q ss_pred CcccEEEEEECCCCCEEEEEEcCCcEEEEeCCCCccccccceecCCCC------------CCceEEEEecCCCC--eEEE
Q 048012 148 HTKIVSALAVDHSGSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSE------------GHQVRNLSWSPTSD--RFLC 213 (616)
Q Consensus 148 H~~~V~~v~~sp~g~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~------------~~~v~~l~~sp~g~--~l~~ 213 (616)
....|.+|.|+..|.+||||..+|.|.++.-.......-.+......| ...|..+.|.++++ .++.
T Consensus 24 eadiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLl 103 (433)
T KOG1354|consen 24 EADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLL 103 (433)
T ss_pred hhcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEE
Confidence 356799999999999999999999999997543221100111111111 12488899998765 5888
Q ss_pred EeCCCeEEEEECCCCeeee---------------------EeeCcee--Eeecc-cCCCcccceEEEEEcCCCCCEEEEE
Q 048012 214 VTGSAQAKIYDRDGLTLGE---------------------FVKGDMY--IRDLK-NTKGHICGLTCGEWHPKTKETILTS 269 (616)
Q Consensus 214 ~s~d~~v~vwd~~~~~~~~---------------------~~~~~~~--~~~~~-~~~~h~~~v~~~~~~p~~~~~l~s~ 269 (616)
.+.|.+|++|-+....... ....+.. ..+.+ ....|+..|+++.++.|. ..++++
T Consensus 104 stNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~-Et~lSA 182 (433)
T KOG1354|consen 104 STNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDK-ETFLSA 182 (433)
T ss_pred ecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCcc-ceEeec
Confidence 9999999999875332211 0000100 01111 235789999999999976 456654
Q ss_pred eCCCCEEEEECCCccccceEEeeecc--CCCCccEEEEEECCC-CCeEEEEeCCCcEEEEeCCCCCC---CCCce-----
Q 048012 270 SEDGSLRIWDVNEFKSQKQVIKPKLA--RPGRVAVTTCAWDCD-GKCIAGGIGDGSIQVWNLKPGWG---SRPDI----- 338 (616)
Q Consensus 270 s~Dg~v~iwd~~~~~~~~~~~~~~~~--~~~~~~v~~~~~sp~-g~~l~~g~~dg~I~iwd~~~~~~---~~~~~----- 338 (616)
.|=.|.+|++.-....-.+...... ..-.--|++..|+|. .++++-.+..|+|+|.|++...- ..+..
T Consensus 183 -DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEeped 261 (433)
T KOG1354|consen 183 -DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPED 261 (433)
T ss_pred -cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccC
Confidence 5788999998754333333222111 111124788899995 56788888899999999995310 00000
Q ss_pred ----eeecCCCCCeEEEEEcCCCCeEEEEecCCcEEEEeCCCCCCcceEecCCCC-------------CCcceeEEECCC
Q 048012 339 ----HVEKGHSDDITALKFSSDGRILLSRSFDGSLKVWDLRKMKEPLKVFEDLPN-------------NYAQTNVAFSPD 401 (616)
Q Consensus 339 ----~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~-------------~~~v~~v~fspd 401 (616)
..+..--..|..+.|+++|+||++... -+|+|||+.....++.++.-|.. -..-..++|+-+
T Consensus 262 p~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~ 340 (433)
T KOG1354|consen 262 PSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGN 340 (433)
T ss_pred CcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCC
Confidence 001111245889999999999999874 58999999877777777655431 112245899999
Q ss_pred CCEEEEeeccccccCCCceEEEEeCCCC
Q 048012 402 EQLFLTGTSVERESTTGGLLCFYDREKL 429 (616)
Q Consensus 402 g~~l~~gs~~~~~~~~dg~i~iwd~~~~ 429 (616)
+.++++|+ ..+.+++|++..|
T Consensus 341 ~~~v~TGs-------y~n~frvf~~~~g 361 (433)
T KOG1354|consen 341 DSYVMTGS-------YNNVFRVFNLARG 361 (433)
T ss_pred cceEeccc-------ccceEEEecCCCC
Confidence 99999999 8899999996544
No 209
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.66 E-value=3.1e-15 Score=147.25 Aligned_cols=207 Identities=18% Similarity=0.333 Sum_probs=154.5
Q ss_pred CEEEEEEcCCcEEEEeCCCCccccccceecCCCCCCceEEEEecCCCCeEEEEeCCCeEEEEECCCCeeeeEeeCceeEe
Q 048012 162 SRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSDRFLCVTGSAQAKIYDRDGLTLGEFVKGDMYIR 241 (616)
Q Consensus 162 ~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~s~d~~v~vwd~~~~~~~~~~~~~~~~~ 241 (616)
..|+.++.||.+.|-+-.+ ........|...|.+-.|+|+|.-|++++.||.|++|...+.-
T Consensus 76 d~~~i~s~DGkf~il~k~~------rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGML------------ 137 (737)
T KOG1524|consen 76 DTLLICSNDGRFVILNKSA------RVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSGML------------ 137 (737)
T ss_pred ceEEEEcCCceEEEecccc------hhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEeccchH------------
Confidence 4788889999999887543 2233334577889999999999999999999999999987653
Q ss_pred ecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEEEECCCccccceEEeeeccCCCCccEEEEEECCCCCeEEEEeCCC
Q 048012 242 DLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWDCDGKCIAGGIGDG 321 (616)
Q Consensus 242 ~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~g~~dg 321 (616)
-.++......|.|++|.|+..+++++.+ +.+.|=-+.... .+++ ...|.+-|.++.|++..++|++|++|-
T Consensus 138 -RStl~Q~~~~v~c~~W~p~S~~vl~c~g--~h~~IKpL~~n~---k~i~---WkAHDGiiL~~~W~~~s~lI~sgGED~ 208 (737)
T KOG1524|consen 138 -RSTVVQNEESIRCARWAPNSNSIVFCQG--GHISIKPLAANS---KIIR---WRAHDGLVLSLSWSTQSNIIASGGEDF 208 (737)
T ss_pred -HHHHhhcCceeEEEEECCCCCceEEecC--CeEEEeeccccc---ceeE---EeccCcEEEEeecCccccceeecCCce
Confidence 1123445678999999999877776655 345554443211 1222 246777899999999999999999999
Q ss_pred cEEEEeCCCCCCCCCceeeecCCCCCeEEEEEcCCCCeEEEEecCCcEEEEeCCCCCCcceEecCCCCCCcceeEEECCC
Q 048012 322 SIQVWNLKPGWGSRPDIHVEKGHSDDITALKFSSDGRILLSRSFDGSLKVWDLRKMKEPLKVFEDLPNNYAQTNVAFSPD 401 (616)
Q Consensus 322 ~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~v~~v~fspd 401 (616)
..++||... ..+.....|.-+|++|+|+|+ ..++.++. .++++ . .+..+.|..++||+|
T Consensus 209 kfKvWD~~G-----~~Lf~S~~~ey~ITSva~npd-~~~~v~S~-nt~R~---~-----------~p~~GSifnlsWS~D 267 (737)
T KOG1524|consen 209 RFKIWDAQG-----ANLFTSAAEEYAITSVAFNPE-KDYLLWSY-NTARF---S-----------SPRVGSIFNLSWSAD 267 (737)
T ss_pred eEEeecccC-----cccccCChhccceeeeeeccc-cceeeeee-eeeee---c-----------CCCccceEEEEEcCC
Confidence 999999765 466677889999999999999 66666663 34441 1 123355899999999
Q ss_pred CCEEEEeeccccccCCCceEEE
Q 048012 402 EQLFLTGTSVERESTTGGLLCF 423 (616)
Q Consensus 402 g~~l~~gs~~~~~~~~dg~i~i 423 (616)
|..+++|+ ..|.+.+
T Consensus 268 GTQ~a~gt-------~~G~v~~ 282 (737)
T KOG1524|consen 268 GTQATCGT-------STGQLIV 282 (737)
T ss_pred Cceeeccc-------cCceEEE
Confidence 99999998 5665543
No 210
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.66 E-value=1.4e-14 Score=142.93 Aligned_cols=255 Identities=20% Similarity=0.271 Sum_probs=167.4
Q ss_pred cEEEEEECCCCCEEEEEEcCCcEEEEeCCCCccccccceecCCCCCCceEEEEe-----cCCCCeEEEEeCCCeEEEEEC
Q 048012 151 IVSALAVDHSGSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSW-----SPTSDRFLCVTGSAQAKIYDR 225 (616)
Q Consensus 151 ~V~~v~~sp~g~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~-----sp~g~~l~~~s~d~~v~vwd~ 225 (616)
.++...++-.|.+|+-. ....+.+|++.+.......+....- .+....|-.| .+.+--|+++-..|+|.+.|.
T Consensus 125 ~~~~~~~~~~gd~lcFn-vg~~lyv~~~~g~~~~~~pi~k~~y-~gt~P~cHdfn~~~a~~~g~dllIGf~tGqvq~idp 202 (636)
T KOG2394|consen 125 IVTNTNQSGKGDRLCFN-VGRELYVYSYRGAADLSKPIDKREY-KGTSPTCHDFNSFTATPKGLDLLIGFTTGQVQLIDP 202 (636)
T ss_pred ceeeccccCCCCEEEEe-cCCeEEEEEccCcchhccchhhhcc-cCCCCceecccccccCCCCcceEEeeccCceEEecc
Confidence 45555666667766643 2345889988864333222222211 1222333333 456777888999999999986
Q ss_pred CCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEEEECCCccccceEEeeeccCCCCccEEEE
Q 048012 226 DGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPGRVAVTTC 305 (616)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~ 305 (616)
...++..+..... .-....|+|+.|-|.+..+|+.+-.+|.+.+||..-.. .. .-.+.
T Consensus 203 ~~~~~sklfne~r--------~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~-------~~-------t~p~~ 260 (636)
T KOG2394|consen 203 INFEVSKLFNEER--------LINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVC-------GA-------TAPSY 260 (636)
T ss_pred hhhHHHHhhhhcc--------cccccceEEEEEEeCCCceEEEEEecCceEEeeccccc-------cC-------CCCcc
Confidence 6544322211111 11236899999999888899999999999999973110 00 00111
Q ss_pred EECCCCCeEEEEeCCCcEEEEeCCCCCCCCCceeeecCCCCCeEEEEEcCCCCeEEEEecCCcEEEEeCCCCCCcceEec
Q 048012 306 AWDCDGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHSDDITALKFSSDGRILLSRSFDGSLKVWDLRKMKEPLKVFE 385 (616)
Q Consensus 306 ~~sp~g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~v~lwd~~~~~~~~~~~~ 385 (616)
...+++..++.... .-.. .+..+..+.--.+.|..++|+|||++||+.+.||.+||||..+.. .+-++.
T Consensus 261 ~~~k~~~~f~i~t~-------ksk~---~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~e-Llg~mk 329 (636)
T KOG2394|consen 261 QALKDGDQFAILTS-------KSKK---TRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQE-LLGVMK 329 (636)
T ss_pred cccCCCCeeEEeee-------eccc---cCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHH-HHHHHH
Confidence 22345555544332 1111 112333444445589999999999999999999999999998632 222222
Q ss_pred CCCCCCcceeEEECCCCCEEEEeeccccccCCCceEEEEeCCCCceEEEEecCCCCCeEEEEEcC
Q 048012 386 DLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREKLELVSRVGISPACSVVQCAWHP 450 (616)
Q Consensus 386 ~~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p 450 (616)
. --+...||+|||||+||++|+ .|..|.||.+...+.+..-.. |.+.|..|+|.|
T Consensus 330 S--YFGGLLCvcWSPDGKyIvtGG-------EDDLVtVwSf~erRVVARGqG-HkSWVs~VaFDp 384 (636)
T KOG2394|consen 330 S--YFGGLLCVCWSPDGKYIVTGG-------EDDLVTVWSFEERRVVARGQG-HKSWVSVVAFDP 384 (636)
T ss_pred h--hccceEEEEEcCCccEEEecC-------CcceEEEEEeccceEEEeccc-cccceeeEeecc
Confidence 2 223489999999999999999 999999999999998887664 889999999997
No 211
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.66 E-value=5.9e-14 Score=132.22 Aligned_cols=236 Identities=19% Similarity=0.343 Sum_probs=161.0
Q ss_pred ceEEEEecCCCCeEEEEeCCCeEEEEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEE
Q 048012 198 QVRNLSWSPTSDRFLCVTGSAQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRI 277 (616)
Q Consensus 198 ~v~~l~~sp~g~~l~~~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~i 277 (616)
.+..++|++.-..++++..|-.|++|+-.......+ .......|+|++|-|.+...|+.|+..| |.|
T Consensus 100 dlr~~aWhqH~~~fava~nddvVriy~ksst~pt~L------------ks~sQrnvtclawRPlsaselavgCr~g-Ici 166 (445)
T KOG2139|consen 100 DLRGVAWHQHIIAFAVATNDDVVRIYDKSSTCPTKL------------KSVSQRNVTCLAWRPLSASELAVGCRAG-ICI 166 (445)
T ss_pred ceeeEeechhhhhhhhhccCcEEEEeccCCCCCcee------------cchhhcceeEEEeccCCcceeeeeecce-eEE
Confidence 378899999777789999999999999776432111 1234567999999999888888888765 999
Q ss_pred EECCCccccceEEe-------eeccCCCCccEEEEEECCCCCeEEEEeC-CCcEEEEeCCCCCCCCCceeeecCCCCCeE
Q 048012 278 WDVNEFKSQKQVIK-------PKLARPGRVAVTTCAWDCDGKCIAGGIG-DGSIQVWNLKPGWGSRPDIHVEKGHSDDIT 349 (616)
Q Consensus 278 wd~~~~~~~~~~~~-------~~~~~~~~~~v~~~~~sp~g~~l~~g~~-dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~ 349 (616)
|...........+. ......+...|+++.|++||..+++++. |..|.|||..++. .+.......+.++
T Consensus 167 W~~s~tln~~r~~~~~s~~~~qvl~~pgh~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~----~~pL~~~glgg~s 242 (445)
T KOG2139|consen 167 WSDSRTLNANRNIRMMSTHHLQVLQDPGHNPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQ----KIPLIPKGLGGFS 242 (445)
T ss_pred EEcCcccccccccccccccchhheeCCCCceeeEEEEcCCCCEEeecccCcceEEEEcCCCCC----cccccccCCCcee
Confidence 98754222111100 0111234468999999999999998875 6789999999872 2222233446689
Q ss_pred EEEEcCCCCeEEEEecCCcEEEEeCCCCCCcceEecCCCCCCcceeEEECCCCCEEEEeeccccccCCCceEEEEeCCCC
Q 048012 350 ALKFSSDGRILLSRSFDGSLKVWDLRKMKEPLKVFEDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREKL 429 (616)
Q Consensus 350 ~l~~spdg~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~~ 429 (616)
-+.|||||.+|+.+.-|+..++|+........+-. ...+.|...+|+|+|++|+...+ |.-+||.+.-.
T Consensus 243 lLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~---lgsgrvqtacWspcGsfLLf~~s--------gsp~lysl~f~ 311 (445)
T KOG2139|consen 243 LLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWI---LGSGRVQTACWSPCGSFLLFACS--------GSPRLYSLTFD 311 (445)
T ss_pred eEEEcCCCCEEEEecccceeeeehhcccceeccee---ccCCceeeeeecCCCCEEEEEEc--------CCceEEEEeec
Confidence 99999999999999999999999665432222211 12235999999999999887763 22334432110
Q ss_pred ------------ceEE---EE---e-cCC----CCCeEEEEEcCCCCcEEEEecc
Q 048012 430 ------------ELVS---RV---G-ISP----ACSVVQCAWHPKLNQIFATAGD 461 (616)
Q Consensus 430 ------------~~~~---~~---~-~~~----~~~v~~~~~~p~~~~l~~~~~d 461 (616)
+.+. .+ . ... .+.+.+++|+|.|.+|++.-..
T Consensus 312 ~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg 366 (445)
T KOG2139|consen 312 GEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKG 366 (445)
T ss_pred CCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcC
Confidence 0000 00 0 001 3567889999999999998764
No 212
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.65 E-value=1.3e-14 Score=152.47 Aligned_cols=223 Identities=17% Similarity=0.220 Sum_probs=148.9
Q ss_pred EEecCCcccEEEEEECCCCCEEEEEEcC---CcEEEEeCCCCccccccceecCCCCCCceEEEEecCCCCeEEEEe-CCC
Q 048012 143 IVLKGHTKIVSALAVDHSGSRVLSGSYD---YTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSDRFLCVT-GSA 218 (616)
Q Consensus 143 ~~l~~H~~~V~~v~~sp~g~~lasgs~D---g~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~s-~d~ 218 (616)
..+..|...|.+++|+|+|++|+..+.+ ..|++||+.++... .+ ....+ ....++|+|+|++|++++ .++
T Consensus 197 ~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~--~l---~~~~g-~~~~~~wSPDG~~La~~~~~~g 270 (429)
T PRK01742 197 FIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARK--VV---ASFRG-HNGAPAFSPDGSRLAFASSKDG 270 (429)
T ss_pred eEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceE--EE---ecCCC-ccCceeECCCCCEEEEEEecCC
Confidence 4567788899999999999999988764 36999999765321 11 11111 234689999999988765 577
Q ss_pred eEEEE--ECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEEEECCCccccceEEeeeccC
Q 048012 219 QAKIY--DRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLAR 296 (616)
Q Consensus 219 ~v~vw--d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~ 296 (616)
.+.|| |+.+..+.. +..+...+....|+|++..+++++..++..+||++.......... .
T Consensus 271 ~~~Iy~~d~~~~~~~~-------------lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l----~- 332 (429)
T PRK01742 271 VLNIYVMGANGGTPSQ-------------LTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV----G- 332 (429)
T ss_pred cEEEEEEECCCCCeEe-------------eccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe----c-
Confidence 65555 555544321 234555678899999986556666678889999875432222221 1
Q ss_pred CCCccEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCCCCCceeeecCCCCCeEEEEEcCCCCeEEEEecCCcEEEEeCCC
Q 048012 297 PGRVAVTTCAWDCDGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHSDDITALKFSSDGRILLSRSFDGSLKVWDLRK 376 (616)
Q Consensus 297 ~~~~~v~~~~~sp~g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~v~lwd~~~ 376 (616)
+. . .+..|+|+|++|+..+.++ |.+||+.++. .......+ ...++.|+|||++|++++.++.+.+|++..
T Consensus 333 -~~-~-~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~----~~~lt~~~--~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~ 402 (429)
T PRK01742 333 -GR-G-YSAQISADGKTLVMINGDN-VVKQDLTSGS----TEVLSSTF--LDESPSISPNGIMIIYSSTQGLGKVLQLVS 402 (429)
T ss_pred -CC-C-CCccCCCCCCEEEEEcCCC-EEEEECCCCC----eEEecCCC--CCCCceECCCCCEEEEEEcCCCceEEEEEE
Confidence 11 1 3568999999998887765 6669998762 22111222 245788999999999999999888887632
Q ss_pred -CCCcceEecCCCCCCcceeEEECCC
Q 048012 377 -MKEPLKVFEDLPNNYAQTNVAFSPD 401 (616)
Q Consensus 377 -~~~~~~~~~~~~~~~~v~~v~fspd 401 (616)
.+...+.+..+ ...+..++|+|-
T Consensus 403 ~~G~~~~~l~~~--~g~~~~p~wsp~ 426 (429)
T PRK01742 403 ADGRFKARLPGS--DGQVKFPAWSPY 426 (429)
T ss_pred CCCCceEEccCC--CCCCCCcccCCC
Confidence 23344555433 344788899984
No 213
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.64 E-value=1.1e-13 Score=145.15 Aligned_cols=239 Identities=21% Similarity=0.306 Sum_probs=154.1
Q ss_pred CcEEEEeCCCCccccccceecCCCCCCceEEEEecCCCCeEEEEe---CCCeEEEEECCCCeeeeEeeCceeEeecccCC
Q 048012 171 YTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSDRFLCVT---GSAQAKIYDRDGLTLGEFVKGDMYIRDLKNTK 247 (616)
Q Consensus 171 g~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~s---~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~ 247 (616)
..|.+||..+.+. +.+. .+...+.+.+|||+|+.|+..+ ....+.+|++.+++... +....
T Consensus 179 ~~l~~~d~dg~~~-----~~lt-~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~----------l~~~~ 242 (429)
T PRK03629 179 YELRVSDYDGYNQ-----FVVH-RSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ----------VASFP 242 (429)
T ss_pred eeEEEEcCCCCCC-----EEee-cCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEE----------ccCCC
Confidence 3688888876431 1121 2445689999999999998765 34579999988765322 22233
Q ss_pred CcccceEEEEEcCCCCCEEEEEeCCC--CEEEEECCCccccceEEeeeccCCCCccEEEEEECCCCCeEEEEeCC-CcEE
Q 048012 248 GHICGLTCGEWHPKTKETILTSSEDG--SLRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWDCDGKCIAGGIGD-GSIQ 324 (616)
Q Consensus 248 ~h~~~v~~~~~~p~~~~~l~s~s~Dg--~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~g~~d-g~I~ 324 (616)
++ +..+.|+|++..++++.+.++ .|++||+.++... .+. .+...+....|+|+|+.|+..+.+ |...
T Consensus 243 ~~---~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~-~lt------~~~~~~~~~~wSPDG~~I~f~s~~~g~~~ 312 (429)
T PRK03629 243 RH---NGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIR-QVT------DGRSNNTEPTWFPDSQNLAYTSDQAGRPQ 312 (429)
T ss_pred CC---cCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEE-Ecc------CCCCCcCceEECCCCCEEEEEeCCCCCce
Confidence 43 345799999975665656555 4888999765322 121 112246788999999988777654 4444
Q ss_pred EE--eCCCCCCCCCceeeecCCCCCeEEEEEcCCCCeEEEEecC---CcEEEEeCCCCCCcceEecCCCCCCcceeEEEC
Q 048012 325 VW--NLKPGWGSRPDIHVEKGHSDDITALKFSSDGRILLSRSFD---GSLKVWDLRKMKEPLKVFEDLPNNYAQTNVAFS 399 (616)
Q Consensus 325 iw--d~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~D---g~v~lwd~~~~~~~~~~~~~~~~~~~v~~v~fs 399 (616)
|| |+.++ ....+..+...+.+..|+|||++|+..+.+ ..|.+||+.++. ...+... .......|+
T Consensus 313 Iy~~d~~~g-----~~~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~--~~~Lt~~---~~~~~p~~S 382 (429)
T PRK03629 313 VYKVNINGG-----APQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGG--VQVLTDT---FLDETPSIA 382 (429)
T ss_pred EEEEECCCC-----CeEEeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCC--eEEeCCC---CCCCCceEC
Confidence 44 66554 222333344456788999999999887654 358889987653 2333221 224568899
Q ss_pred CCCCEEEEeeccccccCCCceEEEEeCCCCceEEEEecCCCCCeEEEEEcCC
Q 048012 400 PDEQLFLTGTSVERESTTGGLLCFYDREKLELVSRVGISPACSVVQCAWHPK 451 (616)
Q Consensus 400 pdg~~l~~gs~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~ 451 (616)
|||++|+.++.. .....|.++++ ++.....+.. +.+.+...+|+|-
T Consensus 383 pDG~~i~~~s~~----~~~~~l~~~~~-~G~~~~~l~~-~~~~~~~p~Wsp~ 428 (429)
T PRK03629 383 PNGTMVIYSSSQ----GMGSVLNLVST-DGRFKARLPA-TDGQVKFPAWSPY 428 (429)
T ss_pred CCCCEEEEEEcC----CCceEEEEEEC-CCCCeEECcc-CCCCcCCcccCCC
Confidence 999999998831 01235788887 4555555643 4567888899874
No 214
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.63 E-value=7.8e-14 Score=138.72 Aligned_cols=286 Identities=15% Similarity=0.229 Sum_probs=194.3
Q ss_pred CCcccEEEEEECCCCCEE-EEEEcCCcEEEEeCCCCccccccceecCCCCCCceEEEEecCCCCeEEEEeCCCeEEEEEC
Q 048012 147 GHTKIVSALAVDHSGSRV-LSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSDRFLCVTGSAQAKIYDR 225 (616)
Q Consensus 147 ~H~~~V~~v~~sp~g~~l-asgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~s~d~~v~vwd~ 225 (616)
+|...-+.|..+|||+|+ |||-+--.|++||+.... ++.-.......|.-.-++-|-..++.-..|..|.+...
T Consensus 49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLS-----LKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak 123 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLS-----LKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAK 123 (703)
T ss_pred CCccccceeEecCCCcEEEEecccCCceEEEEcccce-----eeeeecccccceeEEEeccchhhheEeecCceeeehhh
Confidence 567788899999999965 567788899999998652 11111112223444444545445555556666655433
Q ss_pred CCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEEEECCCccccceEEeeeccCCCCccEEEE
Q 048012 226 DGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPGRVAVTTC 305 (616)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~ 305 (616)
.+.-.. + .-...-..++++.-...+++.| ....|+-+++..+..+..+... ...+++|
T Consensus 124 ~G~hy~-----------~----RIP~~GRDm~y~~~scDly~~g-sg~evYRlNLEqGrfL~P~~~~------~~~lN~v 181 (703)
T KOG2321|consen 124 YGRHYR-----------T----RIPKFGRDMKYHKPSCDLYLVG-SGSEVYRLNLEQGRFLNPFETD------SGELNVV 181 (703)
T ss_pred cCeeee-----------e----ecCcCCccccccCCCccEEEee-cCcceEEEEccccccccccccc------cccceee
Confidence 322100 0 0011223455554343444444 4556888888877654443221 1378999
Q ss_pred EECCCCCeEEEEeCCCcEEEEeCCCCCCCCCceeee------cCCCC-----CeEEEEEcCCCCeEEEEecCCcEEEEeC
Q 048012 306 AWDCDGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVE------KGHSD-----DITALKFSSDGRILLSRSFDGSLKVWDL 374 (616)
Q Consensus 306 ~~sp~g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~------~~h~~-----~V~~l~~spdg~~l~s~s~Dg~v~lwd~ 374 (616)
..++...+|++|+.+|.|..||.+.. ..+..+ ..|.+ .|++|.|+.+|-.+++|..+|.|.|||+
T Consensus 182 ~in~~hgLla~Gt~~g~VEfwDpR~k----srv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDL 257 (703)
T KOG2321|consen 182 SINEEHGLLACGTEDGVVEFWDPRDK----SRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDL 257 (703)
T ss_pred eecCccceEEecccCceEEEecchhh----hhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEc
Confidence 99999999999999999999999864 222222 23333 3999999999999999999999999999
Q ss_pred CCCCCcceEecCCCCCCcceeEEECCC--CCEEEEeeccccccCCCceEEEEeCCCCceEEEEecCCCCCeEEEEEcCCC
Q 048012 375 RKMKEPLKVFEDLPNNYAQTNVAFSPD--EQLFLTGTSVERESTTGGLLCFYDREKLELVSRVGISPACSVVQCAWHPKL 452 (616)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~v~~v~fspd--g~~l~~gs~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~ 452 (616)
+... ++. ...|....+|..+.|.+. +..|++. ....++|||-.+|+....+. +...++.+++-|+.
T Consensus 258 Ra~~-pl~-~kdh~~e~pi~~l~~~~~~~q~~v~S~--------Dk~~~kiWd~~~Gk~~asiE--pt~~lND~C~~p~s 325 (703)
T KOG2321|consen 258 RASK-PLL-VKDHGYELPIKKLDWQDTDQQNKVVSM--------DKRILKIWDECTGKPMASIE--PTSDLNDFCFVPGS 325 (703)
T ss_pred ccCC-cee-ecccCCccceeeecccccCCCceEEec--------chHHhhhcccccCCceeecc--ccCCcCceeeecCC
Confidence 9744 343 345667778999999776 4556665 46789999999999988874 45669999999999
Q ss_pred CcEEEEeccCCCCceEEEecccCCCC
Q 048012 453 NQIFATAGDKSQGGTHILYDPRLSER 478 (616)
Q Consensus 453 ~~l~~~~~d~~~~~~~~v~~~~~s~~ 478 (616)
..++++-.+ .....+|-+.+.|-
T Consensus 326 Gm~f~Ane~---~~m~~yyiP~LGPa 348 (703)
T KOG2321|consen 326 GMFFTANES---SKMHTYYIPSLGPA 348 (703)
T ss_pred ceEEEecCC---CcceeEEccccCCC
Confidence 999998874 56666777666653
No 215
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.63 E-value=5.3e-14 Score=134.03 Aligned_cols=277 Identities=13% Similarity=0.122 Sum_probs=192.7
Q ss_pred ccEEEEEECCCC--CEEEEEEcCCcEEEEeCCCCcccccccee--cCCCCCCceEEEEecCCCCeEEEEeCCCeEEEEEC
Q 048012 150 KIVSALAVDHSG--SRVLSGSYDYTVRMYDFQGMNSRLQSFRQ--LEPSEGHQVRNLSWSPTSDRFLCVTGSAQAKIYDR 225 (616)
Q Consensus 150 ~~V~~v~~sp~g--~~lasgs~Dg~i~iwd~~~~~~~~~~~~~--~~~~~~~~v~~l~~sp~g~~l~~~s~d~~v~vwd~ 225 (616)
..|+.++|.-++ ..|..++.|..+..+.+...... ..... .......+|..+... ...|++|..+|.+.+|..
T Consensus 56 ~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~-s~~~~~~~~~l~~~~I~gl~~~--dg~Litc~~sG~l~~~~~ 132 (412)
T KOG3881|consen 56 DRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEIS-SSLDDAKTVSLGTKSIKGLKLA--DGTLITCVSSGNLQVRHD 132 (412)
T ss_pred hhhhhheeecCCceeEeeccccCcccccccccCCccc-cccccccccccccccccchhhc--CCEEEEEecCCcEEEEec
Confidence 345555665443 45555556777777776543211 11100 112233345555543 346788899999999998
Q ss_pred CCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCC--CCEEEEECCCccccceEEeee---ccCCCCc
Q 048012 226 DGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSED--GSLRIWDVNEFKSQKQVIKPK---LARPGRV 300 (616)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~D--g~v~iwd~~~~~~~~~~~~~~---~~~~~~~ 300 (616)
....+... .+..+..+ ..+..+.-++..++++++|+.. ..+.|||+...+++..-.... ....-..
T Consensus 133 k~~d~hss--------~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPv 203 (412)
T KOG3881|consen 133 KSGDLHSS--------KLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPV 203 (412)
T ss_pred cCCccccc--------cceeeecC-CceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeee
Confidence 84432210 11111222 4566677777777888999998 889999998764332221111 1111233
Q ss_pred cEEEEEECCC--CCeEEEEeCCCcEEEEeCCCCCCCCCceeeecCCCCCeEEEEEcCCCCeEEEEecCCcEEEEeCCCCC
Q 048012 301 AVTTCAWDCD--GKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHSDDITALKFSSDGRILLSRSFDGSLKVWDLRKMK 378 (616)
Q Consensus 301 ~v~~~~~sp~--g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~v~lwd~~~~~ 378 (616)
.++.+.|-+. ...||+++.-+.|++||.+. .+.++..+.--..+|+++...|++++|+++..-+.+..||++..+
T Consensus 204 W~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~---qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~k 280 (412)
T KOG3881|consen 204 WITDIRFLEGSPNYKFATITRYHQVRLYDTRH---QRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGK 280 (412)
T ss_pred eeccceecCCCCCceEEEEecceeEEEecCcc---cCcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCce
Confidence 5678889887 88999999999999999996 457778888788899999999999999999999999999999876
Q ss_pred CcceEecCCCCCCcceeEEECCCCCEEEEeeccccccCCCceEEEEeCCCCceEEEEecCCCCCeEEEEEcCCC
Q 048012 379 EPLKVFEDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREKLELVSRVGISPACSVVQCAWHPKL 452 (616)
Q Consensus 379 ~~~~~~~~~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~ 452 (616)
.....+.+.. +.++++..+|.+++|++++ -|..|+|+|+.+.+++..+.+ ...++++.+.++.
T Consensus 281 l~g~~~kg~t--Gsirsih~hp~~~~las~G-------LDRyvRIhD~ktrkll~kvYv--Ks~lt~il~~~~~ 343 (412)
T KOG3881|consen 281 LLGCGLKGIT--GSIRSIHCHPTHPVLASCG-------LDRYVRIHDIKTRKLLHKVYV--KSRLTFILLRDDV 343 (412)
T ss_pred eeccccCCcc--CCcceEEEcCCCceEEeec-------cceeEEEeecccchhhhhhhh--hccccEEEecCCc
Confidence 6555566654 4499999999999999999 899999999999888777654 3456777776653
No 216
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.61 E-value=4.7e-14 Score=131.21 Aligned_cols=272 Identities=17% Similarity=0.203 Sum_probs=176.5
Q ss_pred ecCCcccEEEEEECCCCC-EEEEEEcCCcEEEEeCCCCccccccceecCCCCCCceEEEEecCCCCeEEEEeCCCeEEEE
Q 048012 145 LKGHTKIVSALAVDHSGS-RVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSDRFLCVTGSAQAKIY 223 (616)
Q Consensus 145 l~~H~~~V~~v~~sp~g~-~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~s~d~~v~vw 223 (616)
+......+.+++|||+|+ +|.+...|-.|.||.+.+.. -...+...+.+..++|+++|++.+.++.-...-.+
T Consensus 87 Ideg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~------~~~~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv 160 (447)
T KOG4497|consen 87 IDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQK------GYLLPHPKTNVKGYAFHPDGQFCAILSRRDCKDYV 160 (447)
T ss_pred eccCCCcceeeeECCCcceEeeeecceeEEEEEEeccce------eEEecccccCceeEEECCCCceeeeeecccHHHHH
Confidence 345567899999999995 56677789999999987642 12233345568999999999998877754221111
Q ss_pred ECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEEEECCCccccceEEeeeccCCCCccEE
Q 048012 224 DRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPGRVAVT 303 (616)
Q Consensus 224 d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~ 303 (616)
++...+-+. -++.+.-.+-..+.+.|+|+|. .| .+||---.-.+..+ . -...+.
T Consensus 161 ~i~~c~~W~---------ll~~f~~dT~DltgieWsPdg~-~l---------aVwd~~Leykv~aY---e----~~lG~k 214 (447)
T KOG4497|consen 161 QISSCKAWI---------LLKEFKLDTIDLTGIEWSPDGN-WL---------AVWDNVLEYKVYAY---E----RGLGLK 214 (447)
T ss_pred HHHhhHHHH---------HHHhcCCCcccccCceECCCCc-EE---------EEecchhhheeeee---e----ecccee
Confidence 111111010 1233444556678999999873 44 46764211111111 0 112688
Q ss_pred EEEECCCCCeEEEEeCCCcEEEEeCCCC-----CC---------------------------------------------
Q 048012 304 TCAWDCDGKCIAGGIGDGSIQVWNLKPG-----WG--------------------------------------------- 333 (616)
Q Consensus 304 ~~~~sp~g~~l~~g~~dg~I~iwd~~~~-----~~--------------------------------------------- 333 (616)
.++|+|.+++|++|+.|+.+|+.+--+- +.
T Consensus 215 ~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~ 294 (447)
T KOG4497|consen 215 FVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESET 294 (447)
T ss_pred EEEeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchh
Confidence 9999999999999999999988652110 00
Q ss_pred ------CCCceeeec------CCCCCeEEEEEcCCCCeEEEEec--CCcEEEEeCCCCCCcceEecCCCCCCcceeEEEC
Q 048012 334 ------SRPDIHVEK------GHSDDITALKFSSDGRILLSRSF--DGSLKVWDLRKMKEPLKVFEDLPNNYAQTNVAFS 399 (616)
Q Consensus 334 ------~~~~~~~~~------~h~~~V~~l~~spdg~~l~s~s~--Dg~v~lwd~~~~~~~~~~~~~~~~~~~v~~v~fs 399 (616)
....+..++ ...-.+.-++|++|..+++|... -+.+-|||+++.+. ..-+....+|....|+
T Consensus 295 ~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l----~avLiQk~piraf~Wd 370 (447)
T KOG4497|consen 295 IYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKL----HAVLIQKHPIRAFEWD 370 (447)
T ss_pred hhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhhh----hhhhhhccceeEEEeC
Confidence 000000111 11234678999999999998863 35799999997432 2222344559999999
Q ss_pred CCCCEEEEeeccccccCCCceEEEEeCCCCceEEEEecCCCCCeEEEEEcCCCCcEEEEecc
Q 048012 400 PDEQLFLTGTSVERESTTGGLLCFYDREKLELVSRVGISPACSVVQCAWHPKLNQIFATAGD 461 (616)
Q Consensus 400 pdg~~l~~gs~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d 461 (616)
|....|+.++ ....+++|...-...+.. .. .+-.|..+.|+-.+..|+..+.|
T Consensus 371 P~~prL~vct-------g~srLY~W~psg~~~V~v-P~-~GF~i~~l~W~~~g~~i~l~~kD 423 (447)
T KOG4497|consen 371 PGRPRLVVCT-------GKSRLYFWAPSGPRVVGV-PK-KGFNIQKLQWLQPGEFIVLCGKD 423 (447)
T ss_pred CCCceEEEEc-------CCceEEEEcCCCceEEec-CC-CCceeeeEEecCCCcEEEEEcCC
Confidence 9999999988 677899999776444332 22 34679999999999988888775
No 217
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.60 E-value=1.9e-13 Score=143.94 Aligned_cols=238 Identities=18% Similarity=0.211 Sum_probs=153.1
Q ss_pred CcEEEEeCCCCccccccceecCCCCCCceEEEEecCCCCeEEEEeC---CCeEEEEECCCCeeeeEeeCceeEeecccCC
Q 048012 171 YTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSDRFLCVTG---SAQAKIYDRDGLTLGEFVKGDMYIRDLKNTK 247 (616)
Q Consensus 171 g~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~s~---d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~ 247 (616)
..|.+||..+.. .+.+. .+...+.+..|+|+|+.|+.++. ...|++|++.++.... +.
T Consensus 184 ~~l~i~D~~g~~-----~~~lt-~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~----------l~--- 244 (433)
T PRK04922 184 YALQVADSDGYN-----PQTIL-RSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL----------VA--- 244 (433)
T ss_pred EEEEEECCCCCC-----ceEee-cCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE----------ec---
Confidence 468899986532 12222 24556899999999999998874 3579999998765322 11
Q ss_pred CcccceEEEEEcCCCCCEEEEEeCCC--CEEEEECCCccccceEEeeeccCCCCccEEEEEECCCCCeEEEEeC-CCc--
Q 048012 248 GHICGLTCGEWHPKTKETILTSSEDG--SLRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWDCDGKCIAGGIG-DGS-- 322 (616)
Q Consensus 248 ~h~~~v~~~~~~p~~~~~l~s~s~Dg--~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~g~~-dg~-- 322 (616)
.+.....+..|+|++..++++.+.++ .|++||+.++... .+. .+.......+|+|+|+.|+..+. +|.
T Consensus 245 ~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~-~lt------~~~~~~~~~~~spDG~~l~f~sd~~g~~~ 317 (433)
T PRK04922 245 SFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLT-RLT------NHFGIDTEPTWAPDGKSIYFTSDRGGRPQ 317 (433)
T ss_pred cCCCCccCceECCCCCEEEEEEeCCCCceEEEEECCCCCeE-ECc------cCCCCccceEECCCCCEEEEEECCCCCce
Confidence 12223457899999976666766666 4999999775421 111 11113457899999998887764 454
Q ss_pred EEEEeCCCCCCCCCceeeecCCCCCeEEEEEcCCCCeEEEEecCC---cEEEEeCCCCCCcceEecCCCCCCcceeEEEC
Q 048012 323 IQVWNLKPGWGSRPDIHVEKGHSDDITALKFSSDGRILLSRSFDG---SLKVWDLRKMKEPLKVFEDLPNNYAQTNVAFS 399 (616)
Q Consensus 323 I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg---~v~lwd~~~~~~~~~~~~~~~~~~~v~~v~fs 399 (616)
|+++|+.++ . ...+..+......++|+|||++|+..+.++ .|.+||+.++.. ..+.. ........|+
T Consensus 318 iy~~dl~~g----~-~~~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~--~~Lt~---~~~~~~p~~s 387 (433)
T PRK04922 318 IYRVAASGG----S-AERLTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSV--RTLTP---GSLDESPSFA 387 (433)
T ss_pred EEEEECCCC----C-eEEeecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCe--EECCC---CCCCCCceEC
Confidence 666676654 1 222222334455789999999998776443 599999976432 23322 1234567999
Q ss_pred CCCCEEEEeeccccccCCCceEEEEeCCCCceEEEEecCCCCCeEEEEEcC
Q 048012 400 PDEQLFLTGTSVERESTTGGLLCFYDREKLELVSRVGISPACSVVQCAWHP 450 (616)
Q Consensus 400 pdg~~l~~gs~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p 450 (616)
|||++|+..+.. ...+.|+++++.. .....+.. +.+.+...+|+|
T Consensus 388 pdG~~i~~~s~~----~g~~~L~~~~~~g-~~~~~l~~-~~g~~~~p~wsp 432 (433)
T PRK04922 388 PNGSMVLYATRE----GGRGVLAAVSTDG-RVRQRLVS-ADGEVREPAWSP 432 (433)
T ss_pred CCCCEEEEEEec----CCceEEEEEECCC-CceEEccc-CCCCCCCCccCC
Confidence 999998887631 1245788888854 44555543 345577778886
No 218
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.59 E-value=6.2e-13 Score=140.15 Aligned_cols=241 Identities=13% Similarity=0.131 Sum_probs=155.7
Q ss_pred CcEEEEeCCCCccccccceecCCCCCCceEEEEecCCCCeEEEEeC---CCeEEEEECCCCeeeeEeeCceeEeecccCC
Q 048012 171 YTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSDRFLCVTG---SAQAKIYDRDGLTLGEFVKGDMYIRDLKNTK 247 (616)
Q Consensus 171 g~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~s~---d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~ 247 (616)
..|.+||..+.. .+.+ ..+...+.+.+|+|+|+.|+.++. +..|.+||+.++.... +.
T Consensus 182 ~~l~~~d~dg~~-----~~~l-t~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~-------------l~ 242 (435)
T PRK05137 182 KRLAIMDQDGAN-----VRYL-TDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQREL-------------VG 242 (435)
T ss_pred eEEEEECCCCCC-----cEEE-ecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEE-------------ee
Confidence 368888876532 1112 234557999999999999988764 4689999998765322 12
Q ss_pred CcccceEEEEEcCCCCCEEEEEeCCCC--EEEEECCCccccceEEeeeccCCCCccEEEEEECCCCCeEEEEeC-CC--c
Q 048012 248 GHICGLTCGEWHPKTKETILTSSEDGS--LRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWDCDGKCIAGGIG-DG--S 322 (616)
Q Consensus 248 ~h~~~v~~~~~~p~~~~~l~s~s~Dg~--v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~g~~-dg--~ 322 (616)
.+...+....|+|++..++++.+.++. |.+||+.++.. ..+. .+........|+|+|+.|+..+. +| .
T Consensus 243 ~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~-~~Lt------~~~~~~~~~~~spDG~~i~f~s~~~g~~~ 315 (435)
T PRK05137 243 NFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTT-TRLT------DSPAIDTSPSYSPDGSQIVFESDRSGSPQ 315 (435)
T ss_pred cCCCcccCcEECCCCCEEEEEEecCCCceEEEEECCCCce-EEcc------CCCCccCceeEcCCCCEEEEEECCCCCCe
Confidence 334456788999999766677777766 77778876532 1121 12224567899999998887764 33 5
Q ss_pred EEEEeCCCCCCCCCceeeecCCCCCeEEEEEcCCCCeEEEEecC---CcEEEEeCCCCCCcceEecCCCCCCcceeEEEC
Q 048012 323 IQVWNLKPGWGSRPDIHVEKGHSDDITALKFSSDGRILLSRSFD---GSLKVWDLRKMKEPLKVFEDLPNNYAQTNVAFS 399 (616)
Q Consensus 323 I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~D---g~v~lwd~~~~~~~~~~~~~~~~~~~v~~v~fs 399 (616)
|++||+.++ ....+..+...+....|+|||++|+..+.+ ..|.+||+.... ...+.. ...+..+.|+
T Consensus 316 Iy~~d~~g~-----~~~~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~--~~~lt~---~~~~~~p~~s 385 (435)
T PRK05137 316 LYVMNADGS-----NPRRISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSG--ERILTS---GFLVEGPTWA 385 (435)
T ss_pred EEEEECCCC-----CeEEeecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCc--eEeccC---CCCCCCCeEC
Confidence 888887754 223333344557778999999999887654 358888875432 233322 1236788999
Q ss_pred CCCCEEEEeeccccccCCCceEEEEeCCCCceEEEEecCCCCCeEEEEEcCC
Q 048012 400 PDEQLFLTGTSVERESTTGGLLCFYDREKLELVSRVGISPACSVVQCAWHPK 451 (616)
Q Consensus 400 pdg~~l~~gs~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~ 451 (616)
|||++|+..+..... .....|+++|+..+.. ..+. ..+.+...+|+|-
T Consensus 386 pDG~~i~~~~~~~~~-~~~~~L~~~dl~g~~~-~~l~--~~~~~~~p~Wsp~ 433 (435)
T PRK05137 386 PNGRVIMFFRQTPGS-GGAPKLYTVDLTGRNE-REVP--TPGDASDPAWSPL 433 (435)
T ss_pred CCCCEEEEEEccCCC-CCcceEEEEECCCCce-EEcc--CCCCccCcccCCC
Confidence 999998876621100 0014688889876654 3443 2334667788774
No 219
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.58 E-value=5.5e-14 Score=138.90 Aligned_cols=228 Identities=16% Similarity=0.210 Sum_probs=158.5
Q ss_pred cCCCCCCceEEEEecCCCCeEEEEeCCCeEEEEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCC-CCEEEEE
Q 048012 191 LEPSEGHQVRNLSWSPTSDRFLCVTGSAQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKT-KETILTS 269 (616)
Q Consensus 191 ~~~~~~~~v~~l~~sp~g~~l~~~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~-~~~l~s~ 269 (616)
...+|.+.|.++.|+.+|.+|++|+.|-.+.|||.-..++.. ....||+..|.++.|-|.. ..++++|
T Consensus 45 eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~Kllh-----------sI~TgHtaNIFsvKFvP~tnnriv~sg 113 (758)
T KOG1310|consen 45 ELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLH-----------SISTGHTANIFSVKFVPYTNNRIVLSG 113 (758)
T ss_pred hhccccceecceeecCCCCEEeecCCcceEEeecchhcceee-----------eeecccccceeEEeeeccCCCeEEEec
Confidence 345688889999999999999999999999999977554321 2247999999999999864 3578899
Q ss_pred eCCCCEEEEECCCccccc----eEEeeeccCCCCccEEEEEECCCC-CeEEEEeCCCcEEEEeCCCCCCCCCc------e
Q 048012 270 SEDGSLRIWDVNEFKSQK----QVIKPKLARPGRVAVTTCAWDCDG-KCIAGGIGDGSIQVWNLKPGWGSRPD------I 338 (616)
Q Consensus 270 s~Dg~v~iwd~~~~~~~~----~~~~~~~~~~~~~~v~~~~~sp~g-~~l~~g~~dg~I~iwd~~~~~~~~~~------~ 338 (616)
..|..|+|+|+...+... .........-|...|..++-.|++ +.+.++++||+|+-||++......+. +
T Consensus 114 AgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l 193 (758)
T KOG1310|consen 114 AGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSIL 193 (758)
T ss_pred cCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHH
Confidence 999999999998532111 111111112344467778888887 88999999999999999974211111 0
Q ss_pred eeecCCCCCeEEEEEcC-CCCeEEEEecCCcEEEEeCCCCCC-----------------cceEecC-CC-------CCC-
Q 048012 339 HVEKGHSDDITALKFSS-DGRILLSRSFDGSLKVWDLRKMKE-----------------PLKVFED-LP-------NNY- 391 (616)
Q Consensus 339 ~~~~~h~~~V~~l~~sp-dg~~l~s~s~Dg~v~lwd~~~~~~-----------------~~~~~~~-~~-------~~~- 391 (616)
..+....-...|++.+| +..+|++|+.|-..+|||.+.... ++..+.. +. ...
T Consensus 194 ~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~ 273 (758)
T KOG1310|consen 194 VNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYI 273 (758)
T ss_pred HHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccce
Confidence 11111223467899999 456899999999999999543111 1222211 00 001
Q ss_pred -cceeEEECCCCCEEEEeeccccccCCCceEEEEeCCCCceEEEEe
Q 048012 392 -AQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREKLELVSRVG 436 (616)
Q Consensus 392 -~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~~~~~~~~~ 436 (616)
.++-+.|+|+|.-|++.- ....|++||+..++....+.
T Consensus 274 ~~~t~vtfnpNGtElLvs~-------~gEhVYlfdvn~~~~~~~y~ 312 (758)
T KOG1310|consen 274 TCCTYVTFNPNGTELLVSW-------GGEHVYLFDVNEDKSPTPYF 312 (758)
T ss_pred eeeEEEEECCCCcEEEEee-------CCeEEEEEeecCCCCceeec
Confidence 146679999999888776 57789999999888766553
No 220
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.57 E-value=6.1e-13 Score=139.55 Aligned_cols=242 Identities=19% Similarity=0.235 Sum_probs=149.7
Q ss_pred CcEEEEeCCCCccccccceecCCCCCCceEEEEecCCCCeEEEEeCC---CeEEEEECCCCeeeeEeeCceeEeecccCC
Q 048012 171 YTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSDRFLCVTGS---AQAKIYDRDGLTLGEFVKGDMYIRDLKNTK 247 (616)
Q Consensus 171 g~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~s~d---~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~ 247 (616)
..|.+||..+.. .+.+. .+...+.+.+|+|+|+.|+..+.. ..|.+||+.++....+ .
T Consensus 176 ~~L~~~D~dG~~-----~~~l~-~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l----------~--- 236 (427)
T PRK02889 176 YQLQISDADGQN-----AQSAL-SSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVV----------A--- 236 (427)
T ss_pred cEEEEECCCCCC-----ceEec-cCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEe----------e---
Confidence 356777765422 11111 244568899999999999887743 4699999987654221 1
Q ss_pred CcccceEEEEEcCCCCCEEEEEeCCCCEEEEECCCc-cccceEEeeeccCCCCccEEEEEECCCCCeEEEEeC-CCcEEE
Q 048012 248 GHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEF-KSQKQVIKPKLARPGRVAVTTCAWDCDGKCIAGGIG-DGSIQV 325 (616)
Q Consensus 248 ~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~-~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~g~~-dg~I~i 325 (616)
.....+.+..|+|++..++++.+.++...||.+... .....+. .+........|+|+|+.|+..+. +|...|
T Consensus 237 ~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~lt------~~~~~~~~~~wSpDG~~l~f~s~~~g~~~I 310 (427)
T PRK02889 237 NFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSGLRRLT------QSSGIDTEPFFSPDGRSIYFTSDRGGAPQI 310 (427)
T ss_pred cCCCCccceEECCCCCEEEEEEccCCCceEEEEECCCCCcEECC------CCCCCCcCeEEcCCCCEEEEEecCCCCcEE
Confidence 122344578999999766667788888777765321 1122111 11223456789999998876654 466677
Q ss_pred EeCCCCCCCCCceeeecCCCCCeEEEEEcCCCCeEEEEecCC---cEEEEeCCCCCCcceEecCCCCCCcceeEEECCCC
Q 048012 326 WNLKPGWGSRPDIHVEKGHSDDITALKFSSDGRILLSRSFDG---SLKVWDLRKMKEPLKVFEDLPNNYAQTNVAFSPDE 402 (616)
Q Consensus 326 wd~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg---~v~lwd~~~~~~~~~~~~~~~~~~~v~~v~fspdg 402 (616)
|.+.... .....+..+.......+|+|||++|+..+.++ .|.+||+.++. .+.+... .......|+|||
T Consensus 311 y~~~~~~---g~~~~lt~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~--~~~lt~~---~~~~~p~~spdg 382 (427)
T PRK02889 311 YRMPASG---GAAQRVTFTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQ--VTALTDT---TRDESPSFAPNG 382 (427)
T ss_pred EEEECCC---CceEEEecCCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCC--eEEccCC---CCccCceECCCC
Confidence 7554211 11122222223345689999999999877654 59999998653 2222221 224678999999
Q ss_pred CEEEEeeccccccCCCceEEEEeCCCCceEEEEecCCCCCeEEEEEcCC
Q 048012 403 QLFLTGTSVERESTTGGLLCFYDREKLELVSRVGISPACSVVQCAWHPK 451 (616)
Q Consensus 403 ~~l~~gs~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~ 451 (616)
++|+..+.. .....|++.++ ++.....+.. +.+.+...+|+|-
T Consensus 383 ~~l~~~~~~----~g~~~l~~~~~-~g~~~~~l~~-~~g~~~~p~wsp~ 425 (427)
T PRK02889 383 RYILYATQQ----GGRSVLAAVSS-DGRIKQRLSV-QGGDVREPSWGPF 425 (427)
T ss_pred CEEEEEEec----CCCEEEEEEEC-CCCceEEeec-CCCCCCCCccCCC
Confidence 999988731 01235777777 4555555543 4456777888875
No 221
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.56 E-value=2.3e-11 Score=123.91 Aligned_cols=291 Identities=17% Similarity=0.197 Sum_probs=177.8
Q ss_pred ccEEEEEECCCCCEEEEEEc----CCcEEEEeCCCCccccccceecCCCCCCceEEEEecCCCCeEEEEeC-CCeEEEEE
Q 048012 150 KIVSALAVDHSGSRVLSGSY----DYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSDRFLCVTG-SAQAKIYD 224 (616)
Q Consensus 150 ~~V~~v~~sp~g~~lasgs~----Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~s~-d~~v~vwd 224 (616)
.....|+++|++++|++... ++.|..|.+......+..+..... .+.....+++++++++|+++.. ++.|.+++
T Consensus 37 ~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~-~g~~p~~i~~~~~g~~l~vany~~g~v~v~~ 115 (345)
T PF10282_consen 37 ENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPS-GGSSPCHIAVDPDGRFLYVANYGGGSVSVFP 115 (345)
T ss_dssp SSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEE-SSSCEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred CCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeecc-CCCCcEEEEEecCCCEEEEEEccCCeEEEEE
Confidence 44567889999999999887 468999988764233333333322 4555778999999999998875 79999999
Q ss_pred CCC-CeeeeEeeCcee-EeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEEEECCCccccceEEeeeccCCCCccE
Q 048012 225 RDG-LTLGEFVKGDMY-IRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPGRVAV 302 (616)
Q Consensus 225 ~~~-~~~~~~~~~~~~-~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v 302 (616)
+.. +.+......... -........-.....++.|+|+++.++++.-....|++|++............... ......
T Consensus 116 l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~-~~G~GP 194 (345)
T PF10282_consen 116 LDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKV-PPGSGP 194 (345)
T ss_dssp ECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEEC-STTSSE
T ss_pred ccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeecccc-ccCCCC
Confidence 986 344332110000 00011112233456889999998655555555567999999765421111111111 122257
Q ss_pred EEEEECCCCCeEEEEe-CCCcEEEEeCCCCCCCCCceeeecC------CCCCeEEEEEcCCCCeEEEEe-cCCcEEEEeC
Q 048012 303 TTCAWDCDGKCIAGGI-GDGSIQVWNLKPGWGSRPDIHVEKG------HSDDITALKFSSDGRILLSRS-FDGSLKVWDL 374 (616)
Q Consensus 303 ~~~~~sp~g~~l~~g~-~dg~I~iwd~~~~~~~~~~~~~~~~------h~~~V~~l~~spdg~~l~s~s-~Dg~v~lwd~ 374 (616)
..++|+|+++++++.. .++.|.+|++.........+..... .......|+++|||++|+++. ..++|.+|++
T Consensus 195 Rh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~ 274 (345)
T PF10282_consen 195 RHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDL 274 (345)
T ss_dssp EEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEE
T ss_pred cEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEE
Confidence 8999999999886665 4778999998832111122222211 112578999999999888766 5678999999
Q ss_pred CCCCCcceEecCCC-CCCcceeEEECCCCCEEEEeeccccccCCCceEEEEeC--CCCceEEEEecCCCCCeEEEEE
Q 048012 375 RKMKEPLKVFEDLP-NNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDR--EKLELVSRVGISPACSVVQCAW 448 (616)
Q Consensus 375 ~~~~~~~~~~~~~~-~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~--~~~~~~~~~~~~~~~~v~~~~~ 448 (616)
......+..+.... .....+.++|+|+|++|+++.. .++.|.+|++ .+|.+........-....||.|
T Consensus 275 d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~------~s~~v~vf~~d~~tG~l~~~~~~~~~~~p~ci~f 345 (345)
T PF10282_consen 275 DPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQ------DSNTVSVFDIDPDTGKLTPVGSSVPIPSPVCIVF 345 (345)
T ss_dssp CTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEET------TTTEEEEEEEETTTTEEEEEEEEEESSSEEEEEE
T ss_pred ecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEec------CCCeEEEEEEeCCCCcEEEecccccCCCCEEEeC
Confidence 53322233333222 2334789999999999999874 6778999875 5776554432222345677766
No 222
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.55 E-value=1.4e-13 Score=134.53 Aligned_cols=289 Identities=15% Similarity=0.154 Sum_probs=201.7
Q ss_pred CCCCCCceEEEEecCCCCeEEEEeCCCeEEEEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCC-CCEEEEEe
Q 048012 192 EPSEGHQVRNLSWSPTSDRFLCVTGSAQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKT-KETILTSS 270 (616)
Q Consensus 192 ~~~~~~~v~~l~~sp~g~~l~~~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~-~~~l~s~s 270 (616)
...|.+.|..|.|+..|..|++++.|.+|.+||+..... .+....||...|....|.|.. ...+++++
T Consensus 138 L~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~-----------~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s 206 (559)
T KOG1334|consen 138 LNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSP-----------KLSFESGHCNNVFQAKFIPFSGDRTIVTSS 206 (559)
T ss_pred ccCCCCccceeeecccCceeeccCccceEEeehhhccCc-----------ccccccccccchhhhhccCCCCCcCceecc
Confidence 345777899999999999999999999999999886542 244567899999888898864 35799999
Q ss_pred CCCCEEEEECCCccccceEEeeeccCCCCccEEEEEECCCC-CeEEEEeCCCcEEEEeCCCCCCCCCceeeecCCCC---
Q 048012 271 EDGSLRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWDCDG-KCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHSD--- 346 (616)
Q Consensus 271 ~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g-~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~h~~--- 346 (616)
.||.||+=.+.....+.... ....|..+|..++..|+. ..|.+++.|+.+.-+|++.+... ..+.....+..
T Consensus 207 ~dgqvr~s~i~~t~~~e~t~---rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa-~~~~cr~~~~~~~v 282 (559)
T KOG1334|consen 207 RDGQVRVSEILETGYVENTK---RLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPA-EKFVCREADEKERV 282 (559)
T ss_pred ccCceeeeeeccccceecce---ecccccCccceeeecCCCCCcccccccccceeeeeeccCCcc-ceeeeeccCCccce
Confidence 99999998876544333222 223566688889888854 46889999999999999986322 22234444444
Q ss_pred CeEEEEEcCCC-CeEEEEecCCcEEEEeCCCCCCc-----ceEecCC----CCCCcceeEEECCCCCEEEEeeccccccC
Q 048012 347 DITALKFSSDG-RILLSRSFDGSLKVWDLRKMKEP-----LKVFEDL----PNNYAQTNVAFSPDEQLFLTGTSVEREST 416 (616)
Q Consensus 347 ~V~~l~~spdg-~~l~s~s~Dg~v~lwd~~~~~~~-----~~~~~~~----~~~~~v~~v~fspdg~~l~~gs~~~~~~~ 416 (616)
..+.|+..|-. +.+++++.|..+++||.+..... +..+..+ .....|++++|+.++.-|++.-
T Consensus 283 ~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSY------- 355 (559)
T KOG1334|consen 283 GLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASY------- 355 (559)
T ss_pred eeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeee-------
Confidence 56889999954 48999999999999999864321 1111111 2334589999997776666655
Q ss_pred CCceEEEEeCCC--C----------ceEEE-EecCCC-CCeEEE-EEcCCCCcEEEEeccCCCCceEEEec---------
Q 048012 417 TGGLLCFYDREK--L----------ELVSR-VGISPA-CSVVQC-AWHPKLNQIFATAGDKSQGGTHILYD--------- 472 (616)
Q Consensus 417 ~dg~i~iwd~~~--~----------~~~~~-~~~~~~-~~v~~~-~~~p~~~~l~~~~~d~~~~~~~~v~~--------- 472 (616)
.|-.|+||...- | ..+.. ++.+.+ ..|..+ -|-|...++++|+. -+.+.||+
T Consensus 356 nDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSD----CGhIFiW~K~t~eii~~ 431 (559)
T KOG1334|consen 356 NDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSD----CGHIFIWDKKTGEIIRF 431 (559)
T ss_pred cccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCc----cceEEEEecchhHHHHH
Confidence 688899996432 2 12222 222111 235555 36788777777775 56677776
Q ss_pred ----------ccCCCCCcEEEEecCCcceecccccCCceeeCCC
Q 048012 473 ----------PRLSERGALVCVARAPRKKSVDDFEVAPVIHNPH 506 (616)
Q Consensus 473 ----------~~~s~~g~~l~s~~~d~~~~~wd~~~~~~~~~p~ 506 (616)
+.-.|---+||+++-|..|+||.-.....++.|.
T Consensus 432 MegDr~VVNCLEpHP~~PvLAsSGid~DVKIWTP~~~er~~~~~ 475 (559)
T KOG1334|consen 432 MEGDRHVVNCLEPHPHLPVLASSGIDHDVKIWTPLTAERATEPT 475 (559)
T ss_pred hhcccceEeccCCCCCCchhhccCCccceeeecCCccccccChh
Confidence 4445667788888899999988765555555553
No 223
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.55 E-value=1.4e-12 Score=140.51 Aligned_cols=280 Identities=15% Similarity=0.139 Sum_probs=172.5
Q ss_pred CCCceEEEEecCC-CCeEEEEeCCCeEEEEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCC
Q 048012 195 EGHQVRNLSWSPT-SDRFLCVTGSAQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDG 273 (616)
Q Consensus 195 ~~~~v~~l~~sp~-g~~l~~~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg 273 (616)
|...|..++.++. +.+|++|+.||+|++|+........ ...+...++..-...+.++...+.+ +.++.++.||
T Consensus 1047 hs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~-----~s~rS~ltys~~~sr~~~vt~~~~~-~~~Av~t~DG 1120 (1431)
T KOG1240|consen 1047 HSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEG-----GSARSELTYSPEGSRVEKVTMCGNG-DQFAVSTKDG 1120 (1431)
T ss_pred ccccccceeecCCCCceEEEecCCceEEEeeehhhhcCc-----ceeeeeEEEeccCCceEEEEeccCC-CeEEEEcCCC
Confidence 4445667777665 4999999999999999976432110 1111122222245567788888766 6899999999
Q ss_pred CEEEEECCCccccceEE---eeeccCCCCccEEEEEECCC-C-CeEEEEeCCCcEEEEeCCCCCCCCCceee--ecCCCC
Q 048012 274 SLRIWDVNEFKSQKQVI---KPKLARPGRVAVTTCAWDCD-G-KCIAGGIGDGSIQVWNLKPGWGSRPDIHV--EKGHSD 346 (616)
Q Consensus 274 ~v~iwd~~~~~~~~~~~---~~~~~~~~~~~v~~~~~sp~-g-~~l~~g~~dg~I~iwd~~~~~~~~~~~~~--~~~h~~ 346 (616)
.|++.++......+... ...........|..-+|... + ..|+.+..-+.|..||+++. ..... .....+
T Consensus 1121 ~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~----~~~w~lk~~~~hG 1196 (1431)
T KOG1240|consen 1121 SVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMR----HDAWRLKNQLRHG 1196 (1431)
T ss_pred eEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhh----hhHHhhhcCcccc
Confidence 99999987632111111 11111111223334444432 2 37888899999999999874 22222 222346
Q ss_pred CeEEEEEcCCCCeEEEEecCCcEEEEeCCCCCCcceEecCCCCCCcceeEEECCCC---CEEEEeeccccccCCCceEEE
Q 048012 347 DITALKFSSDGRILLSRSFDGSLKVWDLRKMKEPLKVFEDLPNNYAQTNVAFSPDE---QLFLTGTSVERESTTGGLLCF 423 (616)
Q Consensus 347 ~V~~l~~spdg~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~v~~v~fspdg---~~l~~gs~~~~~~~~dg~i~i 423 (616)
.|++++.+|.+++|++|...|.+.+||+| ++.++..+. ++...+++.+..+|-. ..+++++. ...+.|.+
T Consensus 1197 ~vTSi~idp~~~WlviGts~G~l~lWDLR-F~~~i~sw~-~P~~~~i~~v~~~~~~~~~S~~vs~~~-----~~~nevs~ 1269 (1431)
T KOG1240|consen 1197 LVTSIVIDPWCNWLVIGTSRGQLVLWDLR-FRVPILSWE-HPARAPIRHVWLCPTYPQESVSVSAGS-----SSNNEVST 1269 (1431)
T ss_pred ceeEEEecCCceEEEEecCCceEEEEEee-cCceeeccc-CcccCCcceEEeeccCCCCceEEEecc-----cCCCceee
Confidence 79999999999999999999999999999 677776664 4555778888777643 45555541 15688999
Q ss_pred EeCCCCceEEEEecCCCCCeEEEEEcCCCCcEEEEeccCCCCceEEEecccCCCCCcEEEEecCCcceecccccCCc
Q 048012 424 YDREKLELVSRVGISPACSVVQCAWHPKLNQIFATAGDKSQGGTHILYDPRLSERGALVCVARAPRKKSVDDFEVAP 500 (616)
Q Consensus 424 wd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~~~~~~~v~~~~~s~~g~~l~s~~~d~~~~~wd~~~~~ 500 (616)
|++.+|.+.+.+-.+.. +..+.|.--.+ .+. ..+....+++ .+...+.++.+++.|.+|+.||.....
T Consensus 1270 wn~~~g~~~~vl~~s~~--~p~ls~~~Ps~--~~~----kp~~~~~~~~-~~~~~~~~~ltggsd~kIR~wD~~~p~ 1337 (1431)
T KOG1240|consen 1270 WNMETGLRQTVLWASDG--APILSYALPSN--DAR----KPDSLAGISC-GVCEKNGFLLTGGSDMKIRKWDPTRPE 1337 (1431)
T ss_pred eecccCcceEEEEcCCC--Ccchhhhcccc--cCC----CCCcccceee-ecccCCceeeecCCccceeeccCCCcc
Confidence 99999988777755411 22222211100 000 0011111111 122345677778888888888875443
No 224
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.53 E-value=3.3e-13 Score=122.12 Aligned_cols=259 Identities=16% Similarity=0.231 Sum_probs=161.6
Q ss_pred CCcccEEEEEECCCCCEEEEEEcCCcEEEEeCCCCccccccceecCCCCCCceEEEEecCCCCeEEEEeCCC-eEEEEEC
Q 048012 147 GHTKIVSALAVDHSGSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSDRFLCVTGSA-QAKIYDR 225 (616)
Q Consensus 147 ~H~~~V~~v~~sp~g~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~s~d~-~v~vwd~ 225 (616)
.|+..|+.+.--|+ ..|.+-+.|+.+.+|++.... +..+ +.-.+.++.|.+-. ++..+... +.-.|+-
T Consensus 54 ~g~~~it~lq~~p~-d~l~tqgRd~~L~lw~ia~s~-----~i~i---~Si~~nslgFCrfS--l~~~~k~~eqll~yp~ 122 (323)
T KOG0322|consen 54 FGRLFITNLQSIPN-DSLDTQGRDPLLILWTIAYSA-----FISI---HSIVVNSLGFCRFS--LVKKPKNSEQLLEYPS 122 (323)
T ss_pred hccceeeceeecCC-cchhhcCCCceEEEEEccCcc-----eEEE---eeeeccccccccce--eccCCCcchhheecCC
Confidence 57889999988887 578888999999999987531 1111 11224444443311 00000000 1111111
Q ss_pred CCCee-eeEeeCceeEeecc--cCCCcccceEEEEEcCCC--CCEEEEEeCCCCEEEEECCCccccceEEee----eccC
Q 048012 226 DGLTL-GEFVKGDMYIRDLK--NTKGHICGLTCGEWHPKT--KETILTSSEDGSLRIWDVNEFKSQKQVIKP----KLAR 296 (616)
Q Consensus 226 ~~~~~-~~~~~~~~~~~~~~--~~~~h~~~v~~~~~~p~~--~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~----~~~~ 296 (616)
++... .....++.....+. ...+..+.+.|..|.... .-+++.|..+|.|.+||+.++.....+... ....
T Consensus 123 rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~a 202 (323)
T KOG0322|consen 123 RGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNA 202 (323)
T ss_pred cccchhhhhccCccceeEccCchhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchh
Confidence 11000 00000000000000 123445667777754322 235677889999999999986433322211 1123
Q ss_pred CCCccEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCCCCCceeeecCCCCCeEEEEEcCCCCeEEEEecCCcEEEEeCCC
Q 048012 297 PGRVAVTTCAWDCDGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHSDDITALKFSSDGRILLSRSFDGSLKVWDLRK 376 (616)
Q Consensus 297 ~~~~~v~~~~~sp~g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~v~lwd~~~ 376 (616)
.|..+|.++.|.+.-..=++|+.+-.+..|.++-.....+......-..-.|..+..-||++.|||++.|+.||||..++
T Consensus 203 sh~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrt 282 (323)
T KOG0322|consen 203 SHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRT 282 (323)
T ss_pred hccCcceeeeechhhcCCcCCCccccceeeeeccccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEecc
Confidence 45568999999876666677888888999988653212222222222334588999999999999999999999999997
Q ss_pred CCCcceEecCCCCCCcceeEEECCCCCEEEEeeccccccCCCceEEEEeC
Q 048012 377 MKEPLKVFEDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDR 426 (616)
Q Consensus 377 ~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~ 426 (616)
. .++.++..|. ..|.+++|+|+..+++.++ .|+.|.+|++
T Consensus 283 l-~pLAVLkyHs--agvn~vAfspd~~lmAaas-------kD~rISLWkL 322 (323)
T KOG0322|consen 283 L-NPLAVLKYHS--AGVNAVAFSPDCELMAAAS-------KDARISLWKL 322 (323)
T ss_pred C-Cchhhhhhhh--cceeEEEeCCCCchhhhcc-------CCceEEeeec
Confidence 5 5677777655 5599999999999999999 9999999986
No 225
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.51 E-value=2e-12 Score=119.47 Aligned_cols=166 Identities=21% Similarity=0.355 Sum_probs=111.5
Q ss_pred EEEEEcCCCCCEEEEEeC---------CCCEEEEECCCccccceEEeeeccCCCCccEEEEEECCCCCeEEEE--eCCCc
Q 048012 254 TCGEWHPKTKETILTSSE---------DGSLRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWDCDGKCIAGG--IGDGS 322 (616)
Q Consensus 254 ~~~~~~p~~~~~l~s~s~---------Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~g--~~dg~ 322 (616)
..+.|++.|..+++.... -+...||-++........+.. .....|.+++|+|+|+.|++. ..++.
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l----~~~~~I~~~~WsP~g~~favi~g~~~~~ 84 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIEL----KKEGPIHDVAWSPNGNEFAVIYGSMPAK 84 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeec----cCCCceEEEEECcCCCEEEEEEccCCcc
Confidence 356789988766665552 133556655432222111111 122269999999999987654 46789
Q ss_pred EEEEeCCCCCCCCCceeeecCCCCCeEEEEEcCCCCeEEEEecC---CcEEEEeCCCCCCcceEecCCCCCCcceeEEEC
Q 048012 323 IQVWNLKPGWGSRPDIHVEKGHSDDITALKFSSDGRILLSRSFD---GSLKVWDLRKMKEPLKVFEDLPNNYAQTNVAFS 399 (616)
Q Consensus 323 I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~D---g~v~lwd~~~~~~~~~~~~~~~~~~~v~~v~fs 399 (616)
|.|||++. ..+..+ +...+..|.|+|+|++|++++.+ |.|.+||+++.. .+... .+ ..++.++|+
T Consensus 85 v~lyd~~~-----~~i~~~--~~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~-~i~~~---~~-~~~t~~~Ws 152 (194)
T PF08662_consen 85 VTLYDVKG-----KKIFSF--GTQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKK-KISTF---EH-SDATDVEWS 152 (194)
T ss_pred cEEEcCcc-----cEeEee--cCCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCE-Eeecc---cc-CcEEEEEEc
Confidence 99999973 344444 34678899999999999998854 669999999533 23222 22 237899999
Q ss_pred CCCCEEEEeeccccccCCCceEEEEeCCCCceEEEEec
Q 048012 400 PDEQLFLTGTSVERESTTGGLLCFYDREKLELVSRVGI 437 (616)
Q Consensus 400 pdg~~l~~gs~~~~~~~~dg~i~iwd~~~~~~~~~~~~ 437 (616)
|||++|+++++..+.. .|+.++||+. .|+++.....
T Consensus 153 PdGr~~~ta~t~~r~~-~dng~~Iw~~-~G~~l~~~~~ 188 (194)
T PF08662_consen 153 PDGRYLATATTSPRLR-VDNGFKIWSF-QGRLLYKKPF 188 (194)
T ss_pred CCCCEEEEEEecccee-ccccEEEEEe-cCeEeEecch
Confidence 9999999998543222 5788999998 4777766543
No 226
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.51 E-value=4.8e-12 Score=132.81 Aligned_cols=221 Identities=18% Similarity=0.179 Sum_probs=137.7
Q ss_pred CeEEEEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeC-C--CCEEEEECCCccccceEEeeec
Q 048012 218 AQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSE-D--GSLRIWDVNEFKSQKQVIKPKL 294 (616)
Q Consensus 218 ~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~-D--g~v~iwd~~~~~~~~~~~~~~~ 294 (616)
..|.++|.++.... .+..+...+.+.+|+|++. .|+..+. + ..|.+||+.++.... +. .
T Consensus 176 ~~L~~~D~dG~~~~-------------~l~~~~~~v~~p~wSPDG~-~la~~s~~~~~~~I~~~dl~~g~~~~-l~-~-- 237 (427)
T PRK02889 176 YQLQISDADGQNAQ-------------SALSSPEPIISPAWSPDGT-KLAYVSFESKKPVVYVHDLATGRRRV-VA-N-- 237 (427)
T ss_pred cEEEEECCCCCCce-------------EeccCCCCcccceEcCCCC-EEEEEEccCCCcEEEEEECCCCCEEE-ee-c--
Confidence 46777777665422 1234566788999999985 5555443 2 359999998764321 11 1
Q ss_pred cCCCCccEEEEEECCCCCeEE-EEeCCCcEEEEeCCCCCCCCCceeeecCCCCCeEEEEEcCCCCeEEEEec-CCcEEEE
Q 048012 295 ARPGRVAVTTCAWDCDGKCIA-GGIGDGSIQVWNLKPGWGSRPDIHVEKGHSDDITALKFSSDGRILLSRSF-DGSLKVW 372 (616)
Q Consensus 295 ~~~~~~~v~~~~~sp~g~~l~-~g~~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~-Dg~v~lw 372 (616)
....+.+.+|+|+|+.|+ +.+.+|...||.+.... .....+..+...+.+..|+|||+.|+..+. +|...||
T Consensus 238 ---~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~---~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy 311 (427)
T PRK02889 238 ---FKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADG---SGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIY 311 (427)
T ss_pred ---CCCCccceEECCCCCEEEEEEccCCCceEEEEECCC---CCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEE
Confidence 111456789999999876 45678876666543211 123344455555678899999998887664 4666777
Q ss_pred eCCCCCCcceEecCCCCCCcceeEEECCCCCEEEEeeccccccCCCceEEEEeCCCCceEEEEecCCCCCeEEEEEcCCC
Q 048012 373 DLRKMKEPLKVFEDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREKLELVSRVGISPACSVVQCAWHPKL 452 (616)
Q Consensus 373 d~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~ 452 (616)
.+.........+... .......+|||||++|+..+.. .....|++||+.+++... +. .........|+|++
T Consensus 312 ~~~~~~g~~~~lt~~--g~~~~~~~~SpDG~~Ia~~s~~----~g~~~I~v~d~~~g~~~~-lt--~~~~~~~p~~spdg 382 (427)
T PRK02889 312 RMPASGGAAQRVTFT--GSYNTSPRISPDGKLLAYISRV----GGAFKLYVQDLATGQVTA-LT--DTTRDESPSFAPNG 382 (427)
T ss_pred EEECCCCceEEEecC--CCCcCceEECCCCCEEEEEEcc----CCcEEEEEEECCCCCeEE-cc--CCCCccCceECCCC
Confidence 654222112222211 1224468999999999977620 012379999999887543 32 22334678999999
Q ss_pred CcEEEEeccCCCCceEEEeccc
Q 048012 453 NQIFATAGDKSQGGTHILYDPR 474 (616)
Q Consensus 453 ~~l~~~~~d~~~~~~~~v~~~~ 474 (616)
+.|+.++.+ ++...+|-+.
T Consensus 383 ~~l~~~~~~---~g~~~l~~~~ 401 (427)
T PRK02889 383 RYILYATQQ---GGRSVLAAVS 401 (427)
T ss_pred CEEEEEEec---CCCEEEEEEE
Confidence 999998875 3344455444
No 227
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.50 E-value=8.6e-11 Score=119.77 Aligned_cols=299 Identities=18% Similarity=0.248 Sum_probs=185.8
Q ss_pred EEEEEcC----CcEEEEeCCCCccccccceecCCCCCCceEEEEecCCCCeEEEEeC----CCeEEEEECCCC--eeeeE
Q 048012 164 VLSGSYD----YTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSDRFLCVTG----SAQAKIYDRDGL--TLGEF 233 (616)
Q Consensus 164 lasgs~D----g~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~s~----d~~v~vwd~~~~--~~~~~ 233 (616)
++.|++. +.|.+|++......+...... ........|+++|++++|.++.. .+.|..|.+... .+...
T Consensus 2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~--~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~ 79 (345)
T PF10282_consen 2 LYVGSYTNGKGGGIYVFRFDEETGTLTLVQTV--AEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLL 79 (345)
T ss_dssp EEEEECCSSSSTEEEEEEEETTTTEEEEEEEE--EESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEE
T ss_pred EEEEcCCCCCCCcEEEEEEcCCCCCceEeeee--cCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEe
Confidence 5566666 689999885433333333321 13344677899999999998876 468888887753 43322
Q ss_pred eeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEEEECCCccccceEEeee--------ccCCCCccEEEE
Q 048012 234 VKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKPK--------LARPGRVAVTTC 305 (616)
Q Consensus 234 ~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~--------~~~~~~~~v~~~ 305 (616)
. ...........++++|++..++++...+|+|.++++............. ..........++
T Consensus 80 ~----------~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v 149 (345)
T PF10282_consen 80 N----------SVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQV 149 (345)
T ss_dssp E----------EEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEE
T ss_pred e----------eeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeE
Confidence 1 1111223345688999886555555579999999998743222221111 111223467899
Q ss_pred EECCCCCeEEEEeC-CCcEEEEeCCCCCCCCCceee-ecCCCCCeEEEEEcCCCCeEEEEe-cCCcEEEEeCCCCCCcc-
Q 048012 306 AWDCDGKCIAGGIG-DGSIQVWNLKPGWGSRPDIHV-EKGHSDDITALKFSSDGRILLSRS-FDGSLKVWDLRKMKEPL- 381 (616)
Q Consensus 306 ~~sp~g~~l~~g~~-dg~I~iwd~~~~~~~~~~~~~-~~~h~~~V~~l~~spdg~~l~s~s-~Dg~v~lwd~~~~~~~~- 381 (616)
.|+|+|+++++... ...|++|++............ .......-..++|+|+++++++.. .+++|.+|++......+
T Consensus 150 ~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~ 229 (345)
T PF10282_consen 150 VFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLT 229 (345)
T ss_dssp EE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEE
T ss_pred EECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCcee
Confidence 99999998887653 457999999764211111111 223445578999999999887665 57789999988322112
Q ss_pred --eEecCCC----CCCcceeEEECCCCCEEEEeeccccccCCCceEEEEeCC--CCc--eEEEEecCCCCCeEEEEEcCC
Q 048012 382 --KVFEDLP----NNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDRE--KLE--LVSRVGISPACSVVQCAWHPK 451 (616)
Q Consensus 382 --~~~~~~~----~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~--~~~--~~~~~~~~~~~~v~~~~~~p~ 451 (616)
..+...+ .......|+++|||++|+++.. ..+.|.+|++. +++ .+..+.. .......++++|+
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr------~~~sI~vf~~d~~~g~l~~~~~~~~-~G~~Pr~~~~s~~ 302 (345)
T PF10282_consen 230 EIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNR------GSNSISVFDLDPATGTLTLVQTVPT-GGKFPRHFAFSPD 302 (345)
T ss_dssp EEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEEC------TTTEEEEEEECTTTTTEEEEEEEEE-SSSSEEEEEE-TT
T ss_pred EEEEeeeccccccccCCceeEEEecCCCEEEEEec------cCCEEEEEEEecCCCceEEEEEEeC-CCCCccEEEEeCC
Confidence 2222221 1124678999999999999874 67889999983 343 3334433 2344799999999
Q ss_pred CCcEEEEeccCCCCceEEEecccCCCCCcEEEEe
Q 048012 452 LNQIFATAGDKSQGGTHILYDPRLSERGALVCVA 485 (616)
Q Consensus 452 ~~~l~~~~~d~~~~~~~~v~~~~~s~~g~~l~s~ 485 (616)
+++|+++..+ .+.+.+|++.- ..|.+-.++
T Consensus 303 g~~l~Va~~~---s~~v~vf~~d~-~tG~l~~~~ 332 (345)
T PF10282_consen 303 GRYLYVANQD---SNTVSVFDIDP-DTGKLTPVG 332 (345)
T ss_dssp SSEEEEEETT---TTEEEEEEEET-TTTEEEEEE
T ss_pred CCEEEEEecC---CCeEEEEEEeC-CCCcEEEec
Confidence 9999999975 77888888752 246554444
No 228
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.49 E-value=3.1e-12 Score=118.22 Aligned_cols=163 Identities=14% Similarity=0.278 Sum_probs=111.3
Q ss_pred EEEEECCCCCeEEEEeC----------CCcEEEEeCCCCCCCCCceeee-cCCCCCeEEEEEcCCCCeEEEE--ecCCcE
Q 048012 303 TTCAWDCDGKCIAGGIG----------DGSIQVWNLKPGWGSRPDIHVE-KGHSDDITALKFSSDGRILLSR--SFDGSL 369 (616)
Q Consensus 303 ~~~~~sp~g~~l~~g~~----------dg~I~iwd~~~~~~~~~~~~~~-~~h~~~V~~l~~spdg~~l~s~--s~Dg~v 369 (616)
..+.|+++|.+|++-.. -|...||.++... .....+ ....++|.+++|+|+|+.|++. ..+..|
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~---~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v 85 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKN---IPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKV 85 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCC---CccceeeccCCCceEEEEECcCCCEEEEEEccCCccc
Confidence 46789999987765443 1345566554321 122222 2334579999999999987655 367799
Q ss_pred EEEeCCCCCCcceEecCCCCCCcceeEEECCCCCEEEEeeccccccCCCceEEEEeCCCCceEEEEecCCCCCeEEEEEc
Q 048012 370 KVWDLRKMKEPLKVFEDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREKLELVSRVGISPACSVVQCAWH 449 (616)
Q Consensus 370 ~lwd~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~ 449 (616)
.|||++ ...+..+. ...+..+.|||+|++|++++. +...|.|.|||+.+.+.+.+... ..++.+.|+
T Consensus 86 ~lyd~~--~~~i~~~~----~~~~n~i~wsP~G~~l~~~g~----~n~~G~l~~wd~~~~~~i~~~~~---~~~t~~~Ws 152 (194)
T PF08662_consen 86 TLYDVK--GKKIFSFG----TQPRNTISWSPDGRFLVLAGF----GNLNGDLEFWDVRKKKKISTFEH---SDATDVEWS 152 (194)
T ss_pred EEEcCc--ccEeEeec----CCCceEEEECCCCCEEEEEEc----cCCCcEEEEEECCCCEEeecccc---CcEEEEEEc
Confidence 999997 23333332 234778999999999999873 11357899999999998877642 347899999
Q ss_pred CCCCcEEEEeccC--CCCceEEEecccCCCCCcEEEEe
Q 048012 450 PKLNQIFATAGDK--SQGGTHILYDPRLSERGALVCVA 485 (616)
Q Consensus 450 p~~~~l~~~~~d~--~~~~~~~v~~~~~s~~g~~l~s~ 485 (616)
|+|++|+++.... ..+....||+.. |++|...
T Consensus 153 PdGr~~~ta~t~~r~~~dng~~Iw~~~----G~~l~~~ 186 (194)
T PF08662_consen 153 PDGRYLATATTSPRLRVDNGFKIWSFQ----GRLLYKK 186 (194)
T ss_pred CCCCEEEEEEeccceeccccEEEEEec----CeEeEec
Confidence 9999999987631 234556666653 6655544
No 229
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.49 E-value=2.6e-11 Score=115.11 Aligned_cols=235 Identities=12% Similarity=0.174 Sum_probs=155.9
Q ss_pred ceEEEEecCCCCeEEEEeCCCeEEEEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCC--CE
Q 048012 198 QVRNLSWSPTSDRFLCVTGSAQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDG--SL 275 (616)
Q Consensus 198 ~v~~l~~sp~g~~l~~~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg--~v 275 (616)
.+..+.|+.+...|.+|+.+| .++|..+.... ..........|.-+-|+. .+++..+.+. .+
T Consensus 7 ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k------------~~~~~~~~~~IvEmLFSS---SLvaiV~~~qpr~L 70 (391)
T KOG2110|consen 7 TINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEK------------CFSKDTEGVSIVEMLFSS---SLVAIVSIKQPRKL 70 (391)
T ss_pred ceeeeeeccceeEEEccCCCc-eeEEecCchHH------------hhcccCCCeEEEEeeccc---ceeEEEecCCCceE
Confidence 367777888888888777776 45666553321 111122233455566664 3666655554 48
Q ss_pred EEEECCCccccceEEeeeccCCCCccEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCCCCCceeee---cCCCCCeEEEE
Q 048012 276 RIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWDCDGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVE---KGHSDDITALK 352 (616)
Q Consensus 276 ~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~---~~h~~~V~~l~ 352 (616)
++.+++....+..+..+. .|.++.++. +.|++.-. ..|+|||++.. +.+.++ ..+...+.++.
T Consensus 71 kv~~~Kk~~~ICe~~fpt-------~IL~VrmNr--~RLvV~Le-e~IyIydI~~M----klLhTI~t~~~n~~gl~AlS 136 (391)
T KOG2110|consen 71 KVVHFKKKTTICEIFFPT-------SILAVRMNR--KRLVVCLE-ESIYIYDIKDM----KLLHTIETTPPNPKGLCALS 136 (391)
T ss_pred EEEEcccCceEEEEecCC-------ceEEEEEcc--ceEEEEEc-ccEEEEecccc----eeehhhhccCCCccceEeec
Confidence 888887654444333221 688888875 34555443 44999999975 344433 34556677777
Q ss_pred EcCCCCeEEEEe--cCCcEEEEeCCCCCCcceEecCCCCCCcceeEEECCCCCEEEEeeccccccCCCceEEEEeCCCCc
Q 048012 353 FSSDGRILLSRS--FDGSLKVWDLRKMKEPLKVFEDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREKLE 430 (616)
Q Consensus 353 ~spdg~~l~s~s--~Dg~v~lwd~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~~~ 430 (616)
++..+.+|+.=+ ..|.|.|||+.+.+ ++..+.. |.+.+.+++|+++|.+||+++. .+-.|+||.+.+|+
T Consensus 137 ~n~~n~ylAyp~s~t~GdV~l~d~~nl~-~v~~I~a--H~~~lAalafs~~G~llATASe------KGTVIRVf~v~~G~ 207 (391)
T KOG2110|consen 137 PNNANCYLAYPGSTTSGDVVLFDTINLQ-PVNTINA--HKGPLAALAFSPDGTLLATASE------KGTVIRVFSVPEGQ 207 (391)
T ss_pred cCCCCceEEecCCCCCceEEEEEcccce-eeeEEEe--cCCceeEEEECCCCCEEEEecc------CceEEEEEEcCCcc
Confidence 777777888643 46889999998754 4556655 5566999999999999999993 44468999999999
Q ss_pred eEEEEecCC-CCCeEEEEEcCCCCcEEEEeccCCCCceEEEecccC
Q 048012 431 LVSRVGISP-ACSVVQCAWHPKLNQIFATAGDKSQGGTHILYDPRL 475 (616)
Q Consensus 431 ~~~~~~~~~-~~~v~~~~~~p~~~~l~~~~~d~~~~~~~~v~~~~~ 475 (616)
.++.+.-.. -..|.+++|||+..+|.+++. ..++.||.+..
T Consensus 208 kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~----TeTVHiFKL~~ 249 (391)
T KOG2110|consen 208 KLYEFRRGTYPVSIYSLSFSPDSQFLAASSN----TETVHIFKLEK 249 (391)
T ss_pred EeeeeeCCceeeEEEEEEECCCCCeEEEecC----CCeEEEEEecc
Confidence 999885321 245777788888776666554 56666666543
No 230
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.49 E-value=9.5e-14 Score=134.85 Aligned_cols=233 Identities=9% Similarity=0.086 Sum_probs=178.4
Q ss_pred ceEEEEecCCCCeEEEEeCCCeEEEEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEE
Q 048012 198 QVRNLSWSPTSDRFLCVTGSAQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRI 277 (616)
Q Consensus 198 ~v~~l~~sp~g~~l~~~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~i 277 (616)
.-+.+.|+.+|++|+.++..|.|..+|+.+..+... ..-...|.++.|..+. .+++......++|
T Consensus 131 GPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~E-------------i~v~Etv~Dv~~LHne--q~~AVAQK~y~yv 195 (545)
T KOG1272|consen 131 GPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFE-------------INVMETVRDVTFLHNE--QFFAVAQKKYVYV 195 (545)
T ss_pred CCeeeeecCCccEEEecCCccceeeeecccceeeee-------------eehhhhhhhhhhhcch--HHHHhhhhceEEE
Confidence 367899999999999999999999999988775322 1122356777777653 3444456788999
Q ss_pred EECCCccccceEEeeeccCCCCccEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCCCCCceeeecCCCCCeEEEEEcCCC
Q 048012 278 WDVNEFKSQKQVIKPKLARPGRVAVTTCAWDCDGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHSDDITALKFSSDG 357 (616)
Q Consensus 278 wd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~spdg 357 (616)
||-.. ..+..+. ....|..+.|-|..-+|++++..|.++.-|+..| ..+..+..-.+.+..++-+|-.
T Consensus 196 YD~~G-tElHClk-------~~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~G----klVa~~~t~~G~~~vm~qNP~N 263 (545)
T KOG1272|consen 196 YDNNG-TELHCLK-------RHIRVARLEFLPYHFLLVAASEAGFLKYQDVSTG----KLVASIRTGAGRTDVMKQNPYN 263 (545)
T ss_pred ecCCC-cEEeehh-------hcCchhhhcccchhheeeecccCCceEEEeechh----hhhHHHHccCCccchhhcCCcc
Confidence 99643 2222221 1126889999999999999999999999999988 6788888888889999999998
Q ss_pred CeEEEEecCCcEEEEeCCCCCCcceEecCCCCCCcceeEEECCCCCEEEEeeccccccCCCceEEEEeCCCCceEEEEec
Q 048012 358 RILLSRSFDGSLKVWDLRKMKEPLKVFEDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREKLELVSRVGI 437 (616)
Q Consensus 358 ~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~~~~~~~~~~ 437 (616)
-.+-+|...|+|.+|..... .++..+ +.|.++|.+|++.++|+|++|.+ .|..|+|||+++...+.++..
T Consensus 264 aVih~GhsnGtVSlWSP~sk-ePLvKi--LcH~g~V~siAv~~~G~YMaTtG-------~Dr~~kIWDlR~~~ql~t~~t 333 (545)
T KOG1272|consen 264 AVIHLGHSNGTVSLWSPNSK-EPLVKI--LCHRGPVSSIAVDRGGRYMATTG-------LDRKVKIWDLRNFYQLHTYRT 333 (545)
T ss_pred ceEEEcCCCceEEecCCCCc-chHHHH--HhcCCCcceEEECCCCcEEeecc-------cccceeEeeeccccccceeec
Confidence 89999999999999998864 444333 23567799999999999999999 899999999999988877754
Q ss_pred CCCCCeEEEEEcCCCCcEEEEeccCCCCceEEEecccC
Q 048012 438 SPACSVVQCAWHPKLNQIFATAGDKSQGGTHILYDPRL 475 (616)
Q Consensus 438 ~~~~~v~~~~~~p~~~~l~~~~~d~~~~~~~~v~~~~~ 475 (616)
+ .....++++..+ .|+++- |..+.||.-..
T Consensus 334 p--~~a~~ls~Sqkg-lLA~~~-----G~~v~iw~d~~ 363 (545)
T KOG1272|consen 334 P--HPASNLSLSQKG-LLALSY-----GDHVQIWKDAL 363 (545)
T ss_pred C--CCcccccccccc-ceeeec-----CCeeeeehhhh
Confidence 3 346778888764 444444 45677776443
No 231
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.49 E-value=4.5e-11 Score=121.66 Aligned_cols=286 Identities=14% Similarity=0.147 Sum_probs=171.3
Q ss_pred CEE-EEEEcCCcEEEEeCCCCccccccceecCCCCCCceEEEEecCCCCeEEEEeCCCeEEEEECCCCeeeeEeeCceeE
Q 048012 162 SRV-LSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSDRFLCVTGSAQAKIYDRDGLTLGEFVKGDMYI 240 (616)
Q Consensus 162 ~~l-asgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~s~d~~v~vwd~~~~~~~~~~~~~~~~ 240 (616)
+++ ++-..++.|.|.|..+.. ....+.. .+.....+.|+++|+++++++.|+.|.++|+...++....
T Consensus 6 ~l~~V~~~~~~~v~viD~~t~~----~~~~i~~-~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i------ 74 (369)
T PF02239_consen 6 NLFYVVERGSGSVAVIDGATNK----VVARIPT-GGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATI------ 74 (369)
T ss_dssp GEEEEEEGGGTEEEEEETTT-S----EEEEEE--STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEE------
T ss_pred cEEEEEecCCCEEEEEECCCCe----EEEEEcC-CCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEE------
Confidence 344 455568999999987632 2222222 2223345789999999999999999999999987753321
Q ss_pred eecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEEEECCCccccceEEeeeccC-CCCccEEEEEECCCCCeEEEEeC
Q 048012 241 RDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLAR-PGRVAVTTCAWDCDGKCIAGGIG 319 (616)
Q Consensus 241 ~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~g~~l~~g~~ 319 (616)
+. .....+++++++++.+++++..++.|.++|..+.+..+.+....... .....+..+..++....+++.-.
T Consensus 75 ------~~-G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lk 147 (369)
T PF02239_consen 75 ------KV-GGNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLK 147 (369)
T ss_dssp ------E--SSEEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEET
T ss_pred ------ec-CCCcceEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEc
Confidence 11 22357899999997666666789999999999887776664433211 12335778888888885655544
Q ss_pred -CCcEEEEeCCCCCCCCCceeeecCCCCCeEEEEEcCCCCeEEEEe-cCCcEEEEeCCCCCCcceEecC-----------
Q 048012 320 -DGSIQVWNLKPGWGSRPDIHVEKGHSDDITALKFSSDGRILLSRS-FDGSLKVWDLRKMKEPLKVFED----------- 386 (616)
Q Consensus 320 -dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s-~Dg~v~lwd~~~~~~~~~~~~~----------- 386 (616)
-+.|.+.|.... ..................|+|++++++.+. ..+.|-++|..+.+.. ..+..
T Consensus 148 d~~~I~vVdy~d~---~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v-~~i~~g~~p~~~~~~~ 223 (369)
T PF02239_consen 148 DTGEIWVVDYSDP---KNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLV-ALIDTGKKPHPGPGAN 223 (369)
T ss_dssp TTTEEEEEETTTS---SCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEE-EEEE-SSSBEETTEEE
T ss_pred cCCeEEEEEeccc---cccceeeecccccccccccCcccceeeecccccceeEEEeeccceEE-EEeecccccccccccc
Confidence 588888887754 122222333345577899999999887654 5567878887653221 11000
Q ss_pred --CC---------------------------------------CCCcceeEEECCCCCEEEEeeccccccCCCceEEEEe
Q 048012 387 --LP---------------------------------------NNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYD 425 (616)
Q Consensus 387 --~~---------------------------------------~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd 425 (616)
|+ ..+.-.-+.-+|++++|.+...... ..+.|.++|
T Consensus 224 ~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~glFi~thP~s~~vwvd~~~~~---~~~~v~viD 300 (369)
T PF02239_consen 224 FPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGGLFIKTHPDSRYVWVDTFLNP---DADTVQVID 300 (369)
T ss_dssp EEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS--EE--TT-SEEEEE-TT-S---SHT-EEEEE
T ss_pred ccCCCcceEEeeccccceecccccCCccccchhhcCeEEEEEECCCCcceeecCCCCccEEeeccCCC---CCceEEEEE
Confidence 00 0011134567999999999831111 468999999
Q ss_pred CCCCceEEEEecCCCCCeEEEEEcCCCCcEEEEeccCCCCceEEEeccc
Q 048012 426 REKLELVSRVGISPACSVVQCAWHPKLNQIFATAGDKSQGGTHILYDPR 474 (616)
Q Consensus 426 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~~~~~~~v~~~~ 474 (616)
..+.+.+.++.......+..+.|+++|.+++.+..+. ++.+.|||..
T Consensus 301 ~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~--~~~i~v~D~~ 347 (369)
T PF02239_consen 301 KKTLKVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDG--NGAIVVYDAK 347 (369)
T ss_dssp CCGTEEEE-HHHHHT--EEEEEE-TTSSEEEEEEE----TTEEEEEETT
T ss_pred CcCcceeEEEeccCCCcEeccEECCCCCEEEEEEecC--CCEEEEEECC
Confidence 9999888887544444599999999999999998862 3378888765
No 232
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.49 E-value=6.9e-13 Score=131.14 Aligned_cols=184 Identities=21% Similarity=0.326 Sum_probs=124.7
Q ss_pred CCCCEEEEEEcCCcEEEEeCCCCccccccceecCCCCCCceEEEEecCCCC-eEEEEeCCCeEEEEECCCCe------ee
Q 048012 159 HSGSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSD-RFLCVTGSAQAKIYDRDGLT------LG 231 (616)
Q Consensus 159 p~g~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~-~l~~~s~d~~v~vwd~~~~~------~~ 231 (616)
+.+--|+.|=.-|.|.+.|.... ...+.+..-.......|+|+.|-|.+. .++++-.+|.+.+||..-.. ..
T Consensus 183 ~~g~dllIGf~tGqvq~idp~~~-~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~ 261 (636)
T KOG2394|consen 183 PKGLDLLIGFTTGQVQLIDPINF-EVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQ 261 (636)
T ss_pred CCCcceEEeeccCceEEecchhh-HHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCccc
Confidence 45666777777888888875431 111111111112345799999999665 46667789999999863111 00
Q ss_pred eEeeCceeE----------eecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEEEECCCccccceEEeeeccCCCCcc
Q 048012 232 EFVKGDMYI----------RDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPGRVA 301 (616)
Q Consensus 232 ~~~~~~~~~----------~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~ 301 (616)
.+..++.+. .++....--...|+..+|+||+ .+|++.+.||.+||||..+......+. ... +.
T Consensus 262 ~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG-~~LA~VSqDGfLRvF~fdt~eLlg~mk-SYF-----GG 334 (636)
T KOG2394|consen 262 ALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDG-KYLATVSQDGFLRIFDFDTQELLGVMK-SYF-----GG 334 (636)
T ss_pred ccCCCCeeEEeeeeccccCCccceeEeccccccceeEcCCC-ceEEEEecCceEEEeeccHHHHHHHHH-hhc-----cc
Confidence 011111110 1111112223478899999987 599999999999999998754433221 111 16
Q ss_pred EEEEEECCCCCeEEEEeCCCcEEEEeCCCCCCCCCceeeecCCCCCeEEEEEc
Q 048012 302 VTTCAWDCDGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHSDDITALKFS 354 (616)
Q Consensus 302 v~~~~~sp~g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~s 354 (616)
..||+|+|||++|++|++|--|.||.+... +++..-.+|.++|+.|+|.
T Consensus 335 LLCvcWSPDGKyIvtGGEDDLVtVwSf~er----RVVARGqGHkSWVs~VaFD 383 (636)
T KOG2394|consen 335 LLCVCWSPDGKYIVTGGEDDLVTVWSFEER----RVVARGQGHKSWVSVVAFD 383 (636)
T ss_pred eEEEEEcCCccEEEecCCcceEEEEEeccc----eEEEeccccccceeeEeec
Confidence 899999999999999999999999999854 7888899999999999998
No 233
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.48 E-value=8.3e-12 Score=130.89 Aligned_cols=222 Identities=14% Similarity=0.153 Sum_probs=140.2
Q ss_pred EEecCCcccEEEEEECCCCCEEEEEEc---CCcEEEEeCCCCccccccceecCCCCCCceEEEEecCCCCeEEEEe-CCC
Q 048012 143 IVLKGHTKIVSALAVDHSGSRVLSGSY---DYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSDRFLCVT-GSA 218 (616)
Q Consensus 143 ~~l~~H~~~V~~v~~sp~g~~lasgs~---Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~s-~d~ 218 (616)
..+..+...+.+.+|+|+|+.|+..+. +..|.+|++.++.. ..+... ...+..+.|+|+|++|+... .++
T Consensus 192 ~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~-----~~l~~~-~~~~~~~~~SPDG~~La~~~~~~g 265 (429)
T PRK03629 192 FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAV-----RQVASF-PRHNGAPAFSPDGSKLAFALSKTG 265 (429)
T ss_pred EEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCe-----EEccCC-CCCcCCeEECCCCCEEEEEEcCCC
Confidence 345556778999999999999987653 35799999876531 111111 12245689999999988653 333
Q ss_pred --eEEEEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEEE--ECCCccccceEEeeec
Q 048012 219 --QAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIW--DVNEFKSQKQVIKPKL 294 (616)
Q Consensus 219 --~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iw--d~~~~~~~~~~~~~~~ 294 (616)
.|++||+.+..+..+ ..+...+....|+|++..++++...++...|| |+.++.. ..+..
T Consensus 266 ~~~I~~~d~~tg~~~~l-------------t~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~-~~lt~--- 328 (429)
T PRK03629 266 SLNLYVMDLASGQIRQV-------------TDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAP-QRITW--- 328 (429)
T ss_pred CcEEEEEECCCCCEEEc-------------cCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCe-EEeec---
Confidence 688899987654322 22234567889999986444444444555555 5554322 22211
Q ss_pred cCCCCccEEEEEECCCCCeEEEEeCC---CcEEEEeCCCCCCCCCceeeecCCCCCeEEEEEcCCCCeEEEEecCCc---
Q 048012 295 ARPGRVAVTTCAWDCDGKCIAGGIGD---GSIQVWNLKPGWGSRPDIHVEKGHSDDITALKFSSDGRILLSRSFDGS--- 368 (616)
Q Consensus 295 ~~~~~~~v~~~~~sp~g~~l~~g~~d---g~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~--- 368 (616)
.. ....+..|+|+|++|+..+.+ ..|.+||+.++. ...+... .......|+|||++|+..+.++.
T Consensus 329 -~~--~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~-----~~~Lt~~-~~~~~p~~SpDG~~i~~~s~~~~~~~ 399 (429)
T PRK03629 329 -EG--SQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGG-----VQVLTDT-FLDETPSIAPNGTMVIYSSSQGMGSV 399 (429)
T ss_pred -CC--CCccCEEECCCCCEEEEEEccCCCceEEEEECCCCC-----eEEeCCC-CCCCCceECCCCCEEEEEEcCCCceE
Confidence 11 134578899999998876543 358889998762 2222221 22456889999999999998764
Q ss_pred EEEEeCCCCCCcceEecCCCCCCcceeEEECC
Q 048012 369 LKVWDLRKMKEPLKVFEDLPNNYAQTNVAFSP 400 (616)
Q Consensus 369 v~lwd~~~~~~~~~~~~~~~~~~~v~~v~fsp 400 (616)
+.++++. +.. ...+.. +...+...+|+|
T Consensus 400 l~~~~~~-G~~-~~~l~~--~~~~~~~p~Wsp 427 (429)
T PRK03629 400 LNLVSTD-GRF-KARLPA--TDGQVKFPAWSP 427 (429)
T ss_pred EEEEECC-CCC-eEECcc--CCCCcCCcccCC
Confidence 6777774 232 333433 234477888887
No 234
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.47 E-value=1.4e-11 Score=129.85 Aligned_cols=207 Identities=15% Similarity=0.112 Sum_probs=135.5
Q ss_pred CeEEEEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeC---CCCEEEEECCCccccceEEeeec
Q 048012 218 AQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSE---DGSLRIWDVNEFKSQKQVIKPKL 294 (616)
Q Consensus 218 ~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~---Dg~v~iwd~~~~~~~~~~~~~~~ 294 (616)
..|.+||.++..... +..+...+.+..|+|++. .|+..+. ...|++||+.++... .+. .
T Consensus 184 ~~l~i~D~~g~~~~~-------------lt~~~~~v~~p~wSpDg~-~la~~s~~~~~~~l~~~dl~~g~~~-~l~-~-- 245 (433)
T PRK04922 184 YALQVADSDGYNPQT-------------ILRSAEPILSPAWSPDGK-KLAYVSFERGRSAIYVQDLATGQRE-LVA-S-- 245 (433)
T ss_pred EEEEEECCCCCCceE-------------eecCCCccccccCCCCCC-EEEEEecCCCCcEEEEEECCCCCEE-Eec-c--
Confidence 468889887654322 334556788999999985 5555553 346999999765432 111 1
Q ss_pred cCCCCccEEEEEECCCCCeEE-EEeCCC--cEEEEeCCCCCCCCCceeeecCCCCCeEEEEEcCCCCeEEEEec-CCc--
Q 048012 295 ARPGRVAVTTCAWDCDGKCIA-GGIGDG--SIQVWNLKPGWGSRPDIHVEKGHSDDITALKFSSDGRILLSRSF-DGS-- 368 (616)
Q Consensus 295 ~~~~~~~v~~~~~sp~g~~l~-~g~~dg--~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~-Dg~-- 368 (616)
......++.|+|+|+.|+ +.+.+| .|++||+.++ ....+..+......++|+|||+.|+.++. +|.
T Consensus 246 ---~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g-----~~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~ 317 (433)
T PRK04922 246 ---FRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSR-----QLTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQ 317 (433)
T ss_pred ---CCCCccCceECCCCCEEEEEEeCCCCceEEEEECCCC-----CeEECccCCCCccceEECCCCCEEEEEECCCCCce
Confidence 111345789999999775 445555 5999999875 23344555555678999999998887764 444
Q ss_pred EEEEeCCCCCCcceEecCCCCCCcceeEEECCCCCEEEEeeccccccCCCceEEEEeCCCCceEEEEecCCCCCeEEEEE
Q 048012 369 LKVWDLRKMKEPLKVFEDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREKLELVSRVGISPACSVVQCAW 448 (616)
Q Consensus 369 v~lwd~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~ 448 (616)
|+++|+..+. .+.+... ......++|+|||++|+..+. ......|.+||+.+++.. .+. +........|
T Consensus 318 iy~~dl~~g~--~~~lt~~--g~~~~~~~~SpDG~~Ia~~~~----~~~~~~I~v~d~~~g~~~-~Lt--~~~~~~~p~~ 386 (433)
T PRK04922 318 IYRVAASGGS--AERLTFQ--GNYNARASVSPDGKKIAMVHG----SGGQYRIAVMDLSTGSVR-TLT--PGSLDESPSF 386 (433)
T ss_pred EEEEECCCCC--eEEeecC--CCCccCEEECCCCCEEEEEEC----CCCceeEEEEECCCCCeE-ECC--CCCCCCCceE
Confidence 6666765433 2222211 122457899999999988762 001237999999888754 332 2234566799
Q ss_pred cCCCCcEEEEecc
Q 048012 449 HPKLNQIFATAGD 461 (616)
Q Consensus 449 ~p~~~~l~~~~~d 461 (616)
+|+++.|+.++.+
T Consensus 387 spdG~~i~~~s~~ 399 (433)
T PRK04922 387 APNGSMVLYATRE 399 (433)
T ss_pred CCCCCEEEEEEec
Confidence 9999998887764
No 235
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.47 E-value=1.1e-10 Score=118.90 Aligned_cols=270 Identities=16% Similarity=0.176 Sum_probs=156.7
Q ss_pred EecCCcccEEEEEECCCCCEEEEEEcCCcEEEEeCCCCccccccceecCCCCCCceEEEEecCCCCeEEEEe-CCCeEEE
Q 048012 144 VLKGHTKIVSALAVDHSGSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSDRFLCVT-GSAQAKI 222 (616)
Q Consensus 144 ~l~~H~~~V~~v~~sp~g~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~s-~d~~v~v 222 (616)
.+..+...-..+.|+|||+++++++.||.|.++|+.+.. . ...+. .+.....+++|++|++++++. ..+.+.|
T Consensus 31 ~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~-~---v~~i~--~G~~~~~i~~s~DG~~~~v~n~~~~~v~v 104 (369)
T PF02239_consen 31 RIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGK-V---VATIK--VGGNPRGIAVSPDGKYVYVANYEPGTVSV 104 (369)
T ss_dssp EEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSS-E---EEEEE---SSEEEEEEE--TTTEEEEEEEETTEEEE
T ss_pred EEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCccc-E---EEEEe--cCCCcceEEEcCCCCEEEEEecCCCceeE
Confidence 333333333446799999999999999999999998753 2 22221 344578999999999998776 5799999
Q ss_pred EECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEEEECCCccccceEEeeeccCCCCccE
Q 048012 223 YDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPGRVAV 302 (616)
Q Consensus 223 wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v 302 (616)
+|..+.++......... ........+..+..+|....++++.-.-+.|.+-|....+.......... ...
T Consensus 105 ~D~~tle~v~~I~~~~~-----~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g-----~~~ 174 (369)
T PF02239_consen 105 IDAETLEPVKTIPTGGM-----PVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVG-----RFP 174 (369)
T ss_dssp EETTT--EEEEEE--EE------TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE-------TTE
T ss_pred eccccccceeecccccc-----cccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeeccc-----ccc
Confidence 99988765433221110 01114456777777886643444444457888888776533221111111 146
Q ss_pred EEEEECCCCCeEEEE-eCCCcEEEEeCCCCCC------------------------------------------------
Q 048012 303 TTCAWDCDGKCIAGG-IGDGSIQVWNLKPGWG------------------------------------------------ 333 (616)
Q Consensus 303 ~~~~~sp~g~~l~~g-~~dg~I~iwd~~~~~~------------------------------------------------ 333 (616)
....|+|++++++++ ..+..|-++|..++..
T Consensus 175 ~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~ 254 (369)
T PF02239_consen 175 HDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVH 254 (369)
T ss_dssp EEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-S
T ss_pred cccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccc
Confidence 778999999987665 4456777777665410
Q ss_pred ---CCCceeeecCCCCCeEEEEEcCCCCeEEEE----ecCCcEEEEeCCCCCCcceEecCCCCCCcceeEEECCCCCEEE
Q 048012 334 ---SRPDIHVEKGHSDDITALKFSSDGRILLSR----SFDGSLKVWDLRKMKEPLKVFEDLPNNYAQTNVAFSPDEQLFL 406 (616)
Q Consensus 334 ---~~~~~~~~~~h~~~V~~l~~spdg~~l~s~----s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~ 406 (616)
..+.+..+...... ..+..+|++++|.+. ...++|.++|.++... +..+.... ...+..+.|+++|+++.
T Consensus 255 d~~~wkvv~~I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~-~~~i~~~~-~~~~~h~ef~~dG~~v~ 331 (369)
T PF02239_consen 255 DDYAWKVVKTIPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKV-VKTITPGP-GKRVVHMEFNPDGKEVW 331 (369)
T ss_dssp TTTBTSEEEEEE-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEE-EE-HHHHH-T--EEEEEE-TTSSEEE
T ss_pred hhhcCeEEEEEECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEECcCcce-eEEEeccC-CCcEeccEECCCCCEEE
Confidence 01111122222222 456779999999988 3457899999998632 22322111 12388999999999888
Q ss_pred EeeccccccCCCceEEEEeCCCCceEEEEec
Q 048012 407 TGTSVERESTTGGLLCFYDREKLELVSRVGI 437 (616)
Q Consensus 407 ~gs~~~~~~~~dg~i~iwd~~~~~~~~~~~~ 437 (616)
.+.. ..++.|.|||..+++++.++..
T Consensus 332 vS~~-----~~~~~i~v~D~~Tl~~~~~i~~ 357 (369)
T PF02239_consen 332 VSVW-----DGNGAIVVYDAKTLKEKKRIPV 357 (369)
T ss_dssp EEEE-------TTEEEEEETTTTEEEEEEE-
T ss_pred EEEe-----cCCCEEEEEECCCcEEEEEEEe
Confidence 7662 1344899999999999999863
No 236
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.46 E-value=1.8e-10 Score=115.14 Aligned_cols=302 Identities=14% Similarity=0.248 Sum_probs=189.9
Q ss_pred cccEEEEEECCCCCEEEEEEcCCcEEEEeCCCCccccccceecCCCCCCceEEEEecCCCCeEEEE-----eCC-----C
Q 048012 149 TKIVSALAVDHSGSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSDRFLCV-----TGS-----A 218 (616)
Q Consensus 149 ~~~V~~v~~sp~g~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~-----s~d-----~ 218 (616)
...++..+++++|+++|.+ .+..|+|++..... ...... .. .++++.|||.|.+|.+- ..+ .
T Consensus 34 ~~~~~v~~~S~~G~lfA~~-~~~~v~i~~~~~~~----~~lt~~--~~-~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~p 105 (566)
T KOG2315|consen 34 SRPCNVFAYSNNGRLFAYS-DNQVVKVFEIATLK----VVLCVE--LK-KTYDLLFSPKGNYLLTWEPWAIYGPKNASNP 105 (566)
T ss_pred CCcceeEEEcCCCcEEEEE-cCCeEEEEEccCCc----EEEEec--cc-eeeeeeecccccccccccccccccCCCCCCC
Confidence 3446777899999888765 56789999987643 111111 11 58999999999988762 122 3
Q ss_pred eEEEEECCCCeeeeE-----------------------eeCceeEeeccc-----CCCcccceEEEEEcCCCC-CEEEE-
Q 048012 219 QAKIYDRDGLTLGEF-----------------------VKGDMYIRDLKN-----TKGHICGLTCGEWHPKTK-ETILT- 268 (616)
Q Consensus 219 ~v~vwd~~~~~~~~~-----------------------~~~~~~~~~~~~-----~~~h~~~v~~~~~~p~~~-~~l~s- 268 (616)
.+.+|++.+...... ......+.++.. .+-|...|+.+.++|... ..+++
T Consensus 106 n~~v~~vet~~~~s~~q~k~Q~~W~~qfs~dEsl~arlv~nev~f~~~~~f~~~~~kl~~~~i~~f~lSpgp~~~~vAvy 185 (566)
T KOG2315|consen 106 NVLVYNVETGVQRSQIQKKMQNGWVPQFSIDESLAARLVSNEVQFYDLGSFKTIQHKLSVSGITMLSLSPGPEPPFVAVY 185 (566)
T ss_pred ceeeeeeccceehhheehhhhcCcccccccchhhhhhhhcceEEEEecCCccceeeeeeccceeeEEecCCCCCceEEEE
Confidence 577998876332111 011111122211 133566788888988633 33333
Q ss_pred ----EeCCCCEEEEECCCccccceEEeeeccCCCCccEEEEEECCCCCeE-EEEe--CC---------CcEEEEeCCCCC
Q 048012 269 ----SSEDGSLRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWDCDGKCI-AGGI--GD---------GSIQVWNLKPGW 332 (616)
Q Consensus 269 ----~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l-~~g~--~d---------g~I~iwd~~~~~ 332 (616)
.+.-+.||||-+........+-....... .=..+.|++-|.-| +..+ -| .+++++++...
T Consensus 186 vPe~kGaPa~vri~~~~~~~~~~~~a~ksFFka---dkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~- 261 (566)
T KOG2315|consen 186 VPEKKGAPASVRIYKYPEEGQHQPVANKSFFKA---DKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGE- 261 (566)
T ss_pred ccCCCCCCcEEEEeccccccccchhhhcccccc---ceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCc-
Confidence 35567799998763222111111111111 12356788877632 2222 23 36888888732
Q ss_pred CCCCceeeecCCCCCeEEEEEcCCCCeEEEE--ecCCcEEEEeCCCCCCcceEecCCCCCCcceeEEECCCCCEEEEeec
Q 048012 333 GSRPDIHVEKGHSDDITALKFSSDGRILLSR--SFDGSLKVWDLRKMKEPLKVFEDLPNNYAQTNVAFSPDEQLFLTGTS 410 (616)
Q Consensus 333 ~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~--s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~gs~ 410 (616)
....-....++|+++.|+++++-++++ -+-.++.|||++- .++..+.. ++-.++-|+|.|++|+.++.
T Consensus 262 ----s~~V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~--~~v~df~e----gpRN~~~fnp~g~ii~lAGF 331 (566)
T KOG2315|consen 262 ----SVSVPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRG--KPVFDFPE----GPRNTAFFNPHGNIILLAGF 331 (566)
T ss_pred ----eEEEecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCCC--CEeEeCCC----CCccceEECCCCCEEEEeec
Confidence 223333346899999999999766554 4677899999983 33333322 33567999999999999884
Q ss_pred cccccCCCceEEEEeCCCCceEEEEecCCCCCeEEEEEcCCCCcEEEEeccC--CCCceEEEecccCCCCCcEEE
Q 048012 411 VERESTTGGLLCFYDREKLELVSRVGISPACSVVQCAWHPKLNQIFATAGDK--SQGGTHILYDPRLSERGALVC 483 (616)
Q Consensus 411 ~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~--~~~~~~~v~~~~~s~~g~~l~ 483 (616)
+...|.|-|||+.+.+++..+... .-+-+.|+|+|.+|++++... ..+..+.||... |++|.
T Consensus 332 ----GNL~G~mEvwDv~n~K~i~~~~a~---~tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwhyt----G~~l~ 395 (566)
T KOG2315|consen 332 ----GNLPGDMEVWDVPNRKLIAKFKAA---NTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYT----GSLLH 395 (566)
T ss_pred ----CCCCCceEEEeccchhhccccccC---CceEEEEcCCCcEEEEEeccccEEecCCeEEEEec----Cceee
Confidence 335789999999999999888653 357789999999999988742 235667788765 65554
No 237
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.46 E-value=1.2e-11 Score=116.16 Aligned_cols=263 Identities=16% Similarity=0.226 Sum_probs=172.0
Q ss_pred CceEEEEecCCCCeEEEEeCCCeEEEEECCCCeeeeE------eeCceeEeecccCCCcccceEEEEEcCCC-CCEEEEE
Q 048012 197 HQVRNLSWSPTSDRFLCVTGSAQAKIYDRDGLTLGEF------VKGDMYIRDLKNTKGHICGLTCGEWHPKT-KETILTS 269 (616)
Q Consensus 197 ~~v~~l~~sp~g~~l~~~s~d~~v~vwd~~~~~~~~~------~~~~~~~~~~~~~~~h~~~v~~~~~~p~~-~~~l~s~ 269 (616)
.-|.++.|...|.+|++|..+|.|.++......-.++ ...+....-++. -.-...|+.+.|.+++ ...++..
T Consensus 26 diis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkS-leieEKinkIrw~~~~n~a~FLls 104 (433)
T KOG1354|consen 26 DIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKS-LEIEEKINKIRWLDDGNLAEFLLS 104 (433)
T ss_pred cceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhh-hhhhhhhhhceecCCCCccEEEEe
Confidence 3489999999999999999999999998764331111 111110000111 1123357888998765 3467788
Q ss_pred eCCCCEEEEECCCccccc---------------e---------------EEeeeccCCCCccEEEEEECCCCCeEEEEeC
Q 048012 270 SEDGSLRIWDVNEFKSQK---------------Q---------------VIKPKLARPGRVAVTTCAWDCDGKCIAGGIG 319 (616)
Q Consensus 270 s~Dg~v~iwd~~~~~~~~---------------~---------------~~~~~~~~~~~~~v~~~~~sp~g~~l~~g~~ 319 (616)
..|.+|++|-+....... . ..+......|...|+++.++.|+..++++.
T Consensus 105 tNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSAD- 183 (433)
T KOG1354|consen 105 TNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSAD- 183 (433)
T ss_pred cCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeecc-
Confidence 899999999986532211 0 011112346677899999999999988875
Q ss_pred CCcEEEEeCCCCCCCCCceeeecCCC-----CCeEEEEEcC-CCCeEEEEecCCcEEEEeCCCCCCcc---eEecCCC--
Q 048012 320 DGSIQVWNLKPGWGSRPDIHVEKGHS-----DDITALKFSS-DGRILLSRSFDGSLKVWDLRKMKEPL---KVFEDLP-- 388 (616)
Q Consensus 320 dg~I~iwd~~~~~~~~~~~~~~~~h~-----~~V~~l~~sp-dg~~l~s~s~Dg~v~lwd~~~~~~~~---~~~~~~~-- 388 (616)
|=.|.||++.-.......+ -.+.+. .-|++..|+| ..++|+-.+..|+|+|.|+|....+. +.+....
T Consensus 184 dLRINLWnlei~d~sFnIV-DIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp 262 (433)
T KOG1354|consen 184 DLRINLWNLEIIDQSFNIV-DIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDP 262 (433)
T ss_pred ceeeeeccccccCCceeEE-EccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCC
Confidence 7889999987532122222 223332 3489999999 56788888999999999999432211 1111110
Q ss_pred --------CCCcceeEEECCCCCEEEEeeccccccCCCceEEEEeC-CCCceEEEEecCCC-----------CC---eEE
Q 048012 389 --------NNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDR-EKLELVSRVGISPA-----------CS---VVQ 445 (616)
Q Consensus 389 --------~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~-~~~~~~~~~~~~~~-----------~~---v~~ 445 (616)
--..|..+.|+++|+||++-. =-+|+|||+ ...+.+.++++... .. -..
T Consensus 263 ~~rsffseiIsSISDvKFs~sGryilsRD--------yltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFe 334 (433)
T KOG1354|consen 263 SSRSFFSEIISSISDVKFSHSGRYILSRD--------YLTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFE 334 (433)
T ss_pred cchhhHHHHhhhhhceEEccCCcEEEEec--------cceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeE
Confidence 113478899999999999864 378999998 56666666654211 11 245
Q ss_pred EEEcCCCCcEEEEeccCCCCceEEEeccc
Q 048012 446 CAWHPKLNQIFATAGDKSQGGTHILYDPR 474 (616)
Q Consensus 446 ~~~~p~~~~l~~~~~d~~~~~~~~v~~~~ 474 (616)
|+|+-++..+++|+- ....++|+++
T Consensus 335 c~~sg~~~~v~TGsy----~n~frvf~~~ 359 (433)
T KOG1354|consen 335 CSWSGNDSYVMTGSY----NNVFRVFNLA 359 (433)
T ss_pred EEEcCCcceEecccc----cceEEEecCC
Confidence 788888888888876 6677777744
No 238
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.46 E-value=2.1e-11 Score=128.48 Aligned_cols=236 Identities=19% Similarity=0.283 Sum_probs=147.7
Q ss_pred CcEEEEeCCCCccccccceecCCCCCCceEEEEecCCCCeEEEEeCC---CeEEEEECCCCeeeeEeeCceeEeecccCC
Q 048012 171 YTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSDRFLCVTGS---AQAKIYDRDGLTLGEFVKGDMYIRDLKNTK 247 (616)
Q Consensus 171 g~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~s~d---~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~ 247 (616)
..|.++|..+.. .+.+. .+...+.+..|+|+|++|+.++.. ..|++|++.++..... .
T Consensus 170 ~~l~~~d~~g~~-----~~~l~-~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~-------------~ 230 (417)
T TIGR02800 170 YELQVADYDGAN-----PQTIT-RSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKV-------------A 230 (417)
T ss_pred ceEEEEcCCCCC-----CEEee-cCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEe-------------e
Confidence 357777775432 12222 234468899999999999887654 4899999987643221 1
Q ss_pred CcccceEEEEEcCCCCCEEEEEeCCC--CEEEEECCCccccceEEeeeccCCCCccEEEEEECCCCCeEEEEeC-CC--c
Q 048012 248 GHICGLTCGEWHPKTKETILTSSEDG--SLRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWDCDGKCIAGGIG-DG--S 322 (616)
Q Consensus 248 ~h~~~v~~~~~~p~~~~~l~s~s~Dg--~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~g~~-dg--~ 322 (616)
.+...+.++.|+|+++.++++.+.++ .|++||+.++... .+. .+........|+|+|+.|+..+. .+ .
T Consensus 231 ~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~-~l~------~~~~~~~~~~~s~dg~~l~~~s~~~g~~~ 303 (417)
T TIGR02800 231 SFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLT-RLT------NGPGIDTEPSWSPDGKSIAFTSDRGGSPQ 303 (417)
T ss_pred cCCCCccceEECCCCCEEEEEECCCCCccEEEEECCCCCEE-ECC------CCCCCCCCEEECCCCCEEEEEECCCCCce
Confidence 23344566899999875666666554 5888998764321 111 11113346689999998876654 33 5
Q ss_pred EEEEeCCCCCCCCCceeeecCCCCCeEEEEEcCCCCeEEEEecCC---cEEEEeCCCCCCcceEecCCCCCCcceeEEEC
Q 048012 323 IQVWNLKPGWGSRPDIHVEKGHSDDITALKFSSDGRILLSRSFDG---SLKVWDLRKMKEPLKVFEDLPNNYAQTNVAFS 399 (616)
Q Consensus 323 I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg---~v~lwd~~~~~~~~~~~~~~~~~~~v~~v~fs 399 (616)
|++||+.++ ....+..+...+..+.|+|+|++|+.++.++ .|.+||+.+.. ...+... .......|+
T Consensus 304 iy~~d~~~~-----~~~~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~--~~~l~~~---~~~~~p~~s 373 (417)
T TIGR02800 304 IYMMDADGG-----EVRRLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGG--ERVLTDT---GLDESPSFA 373 (417)
T ss_pred EEEEECCCC-----CEEEeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCC--eEEccCC---CCCCCceEC
Confidence 777887754 2233444556678899999999999988776 78899987632 2333221 124567899
Q ss_pred CCCCEEEEeeccccccCCCceEEEEeCCCCceEEEEecCCCCCeEEEEE
Q 048012 400 PDEQLFLTGTSVERESTTGGLLCFYDREKLELVSRVGISPACSVVQCAW 448 (616)
Q Consensus 400 pdg~~l~~gs~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~ 448 (616)
|++++|+..+... ....+++++. ++.....+... .+.+..+.|
T Consensus 374 pdg~~l~~~~~~~----~~~~l~~~~~-~g~~~~~~~~~-~g~~~~~~w 416 (417)
T TIGR02800 374 PNGRMILYATTRG----GRGVLGLVST-DGRFRARLPLG-NGDVREPAW 416 (417)
T ss_pred CCCCEEEEEEeCC----CcEEEEEEEC-CCceeeECCCC-CCCcCCCCC
Confidence 9999998887310 1235666664 34445555432 344554444
No 239
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.45 E-value=3.7e-11 Score=126.70 Aligned_cols=207 Identities=15% Similarity=0.092 Sum_probs=137.3
Q ss_pred CeEEEEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeC---CCCEEEEECCCccccceEEeeec
Q 048012 218 AQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSE---DGSLRIWDVNEFKSQKQVIKPKL 294 (616)
Q Consensus 218 ~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~---Dg~v~iwd~~~~~~~~~~~~~~~ 294 (616)
..|.++|.++.... .+..|...+.+..|+|++. .|+..+. +..|.+||+.++... .+.
T Consensus 182 ~~l~~~d~dg~~~~-------------~lt~~~~~v~~p~wSpDG~-~lay~s~~~g~~~i~~~dl~~g~~~-~l~---- 242 (435)
T PRK05137 182 KRLAIMDQDGANVR-------------YLTDGSSLVLTPRFSPNRQ-EITYMSYANGRPRVYLLDLETGQRE-LVG---- 242 (435)
T ss_pred eEEEEECCCCCCcE-------------EEecCCCCeEeeEECCCCC-EEEEEEecCCCCEEEEEECCCCcEE-Eee----
Confidence 47888888766532 2345667899999999986 5555442 467999999875432 121
Q ss_pred cCCCCccEEEEEECCCCCeEE-EEeCCCc--EEEEeCCCCCCCCCceeeecCCCCCeEEEEEcCCCCeEEEEec-CC--c
Q 048012 295 ARPGRVAVTTCAWDCDGKCIA-GGIGDGS--IQVWNLKPGWGSRPDIHVEKGHSDDITALKFSSDGRILLSRSF-DG--S 368 (616)
Q Consensus 295 ~~~~~~~v~~~~~sp~g~~l~-~g~~dg~--I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~-Dg--~ 368 (616)
.....+.+.+|+|+|+.|+ +.+.+|. |++||+.++ ....+..+........|+|||+.|+..+. +| .
T Consensus 243 --~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~-----~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~ 315 (435)
T PRK05137 243 --NFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSG-----TTTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQ 315 (435)
T ss_pred --cCCCcccCcEECCCCCEEEEEEecCCCceEEEEECCCC-----ceEEccCCCCccCceeEcCCCCEEEEEECCCCCCe
Confidence 1122466889999999775 4555555 777788765 23445556666778999999999887764 33 5
Q ss_pred EEEEeCCCCCCcceEecCCCCCCcceeEEECCCCCEEEEeeccccccCCCceEEEEeCCCCceEEEEecCCCCCeEEEEE
Q 048012 369 LKVWDLRKMKEPLKVFEDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREKLELVSRVGISPACSVVQCAW 448 (616)
Q Consensus 369 v~lwd~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~ 448 (616)
|++||+.... . +.+... ...+....|+|||++|+..... .....|.+||+..+.. ..+.. ...+....|
T Consensus 316 Iy~~d~~g~~-~-~~lt~~--~~~~~~~~~SpdG~~ia~~~~~----~~~~~i~~~d~~~~~~-~~lt~--~~~~~~p~~ 384 (435)
T PRK05137 316 LYVMNADGSN-P-RRISFG--GGRYSTPVWSPRGDLIAFTKQG----GGQFSIGVMKPDGSGE-RILTS--GFLVEGPTW 384 (435)
T ss_pred EEEEECCCCC-e-EEeecC--CCcccCeEECCCCCEEEEEEcC----CCceEEEEEECCCCce-EeccC--CCCCCCCeE
Confidence 8888876432 2 222221 2335678999999999887620 0234788999865543 33332 234677899
Q ss_pred cCCCCcEEEEecc
Q 048012 449 HPKLNQIFATAGD 461 (616)
Q Consensus 449 ~p~~~~l~~~~~d 461 (616)
+|+++.|+....+
T Consensus 385 spDG~~i~~~~~~ 397 (435)
T PRK05137 385 APNGRVIMFFRQT 397 (435)
T ss_pred CCCCCEEEEEEcc
Confidence 9999998877654
No 240
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.43 E-value=1.9e-11 Score=122.02 Aligned_cols=241 Identities=15% Similarity=0.136 Sum_probs=158.2
Q ss_pred CceEEEEecCCCCeEE-EEeCCCeEEEEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCE
Q 048012 197 HQVRNLSWSPTSDRFL-CVTGSAQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSL 275 (616)
Q Consensus 197 ~~v~~l~~sp~g~~l~-~~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v 275 (616)
...+.|..+|||+|++ +|..--.|++||+....+.- -+...+.+..+....++-..++.-..|.+|
T Consensus 52 ~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKF-------------ERhlDae~V~feiLsDD~SK~v~L~~DR~I 118 (703)
T KOG2321|consen 52 TASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKF-------------ERHLDAEVVDFEILSDDYSKSVFLQNDRTI 118 (703)
T ss_pred cccceeEecCCCcEEEEecccCCceEEEEcccceeee-------------eecccccceeEEEeccchhhheEeecCcee
Confidence 3467899999999965 56677899999998766421 122223333333222222234444556666
Q ss_pred EEEECCCccccceEEeeeccCCCCccEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCCCCCceeeecCCCCCeEEEEEcC
Q 048012 276 RIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWDCDGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHSDDITALKFSS 355 (616)
Q Consensus 276 ~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp 355 (616)
-+..... ....+..+. .-..++++.-.--|++++....|+-+++..| ..+..+....+.+++|..++
T Consensus 119 efHak~G--~hy~~RIP~-------~GRDm~y~~~scDly~~gsg~evYRlNLEqG----rfL~P~~~~~~~lN~v~in~ 185 (703)
T KOG2321|consen 119 EFHAKYG--RHYRTRIPK-------FGRDMKYHKPSCDLYLVGSGSEVYRLNLEQG----RFLNPFETDSGELNVVSINE 185 (703)
T ss_pred eehhhcC--eeeeeecCc-------CCccccccCCCccEEEeecCcceEEEEcccc----ccccccccccccceeeeecC
Confidence 6543221 111111111 2244555543333445555667999999977 56666666778899999999
Q ss_pred CCCeEEEEecCCcEEEEeCCCCCCcceEecCC---------CCCCcceeEEECCCCCEEEEeeccccccCCCceEEEEeC
Q 048012 356 DGRILLSRSFDGSLKVWDLRKMKEPLKVFEDL---------PNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDR 426 (616)
Q Consensus 356 dg~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~---------~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~ 426 (616)
-..+|++|+.+|.|.+||.+.... +..+... .....|+++.|+.+|-.+++|+ ..|.|.|||+
T Consensus 186 ~hgLla~Gt~~g~VEfwDpR~ksr-v~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGt-------s~G~v~iyDL 257 (703)
T KOG2321|consen 186 EHGLLACGTEDGVVEFWDPRDKSR-VGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGT-------STGSVLIYDL 257 (703)
T ss_pred ccceEEecccCceEEEecchhhhh-heeeecccccCCCccccccCcceEEEecCCceeEEeec-------cCCcEEEEEc
Confidence 999999999999999999986432 3222211 1123489999999999999999 8999999999
Q ss_pred CCCceEEEEecCCCCCeEEEEEcCCCCcEEEEeccCCCCceEEEeccc
Q 048012 427 EKLELVSRVGISPACSVVQCAWHPKLNQIFATAGDKSQGGTHILYDPR 474 (616)
Q Consensus 427 ~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~~~~~~~v~~~~ 474 (616)
++.+++..-......+|..+.|.+.+.+=.+.+.| -+.+.||+..
T Consensus 258 Ra~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~D---k~~~kiWd~~ 302 (703)
T KOG2321|consen 258 RASKPLLVKDHGYELPIKKLDWQDTDQQNKVVSMD---KRILKIWDEC 302 (703)
T ss_pred ccCCceeecccCCccceeeecccccCCCceEEecc---hHHhhhcccc
Confidence 99998877765556789999998874432333333 5677777743
No 241
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.42 E-value=1.5e-11 Score=115.57 Aligned_cols=254 Identities=15% Similarity=0.163 Sum_probs=181.8
Q ss_pred EecCCcccEEEEEECCCCCEEEEEEcCCcEEEEeCCCCccccccceecCCCCCCceEEEEecCCCCeEEEEeCCCeEEEE
Q 048012 144 VLKGHTKIVSALAVDHSGSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSDRFLCVTGSAQAKIY 223 (616)
Q Consensus 144 ~l~~H~~~V~~v~~sp~g~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~s~d~~v~vw 223 (616)
.++||...|++...-|...-+++.+.|.++|||--.+..+ ....+......+++++.+.++...|+++-..|++.-+
T Consensus 19 ~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q---~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvtef 95 (404)
T KOG1409|consen 19 KIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQ---YWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVTEF 95 (404)
T ss_pred hhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccc---cCchhhhhCCCCceEeeeeccceEEEEEEecceEEEE
Confidence 5789999999999999888999999999999996544332 3333333445679999999999999999999999888
Q ss_pred ECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEEEECCCccccceEEeeeccCCCCccEE
Q 048012 224 DRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPGRVAVT 303 (616)
Q Consensus 224 d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~ 303 (616)
.+...-- ....++....|.+.|..+.|+-.. .++++.+.|..+.---.+.+.....+..... .+
T Consensus 96 s~sedfn--------km~~~r~~~~h~~~v~~~if~~~~-e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~-------~t 159 (404)
T KOG1409|consen 96 ALSEDFN--------KMTFLKDYLAHQARVSAIVFSLTH-EWVLSTGKDKQFAWHCTESGNRLGGYNFETP-------AS 159 (404)
T ss_pred Ehhhhhh--------hcchhhhhhhhhcceeeEEecCCc-eeEEEeccccceEEEeeccCCcccceEeecc-------CC
Confidence 7652210 012355567899999999998754 5888888887664333333333322221111 11
Q ss_pred EEEECCCCCeEEEEeCCCcEEEEeCCCCCCCCCceeeecCCCCCeEEEEEcCCCCeEEEEecCCcEEEEeCCCCCCcceE
Q 048012 304 TCAWDCDGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHSDDITALKFSSDGRILLSRSFDGSLKVWDLRKMKEPLKV 383 (616)
Q Consensus 304 ~~~~sp~g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~v~lwd~~~~~~~~~~ 383 (616)
++.+.-. +.+.|...|.|.+..+... ....+..+.+|...|++++|.+...+|++|..|..+.+||+--.+.....
T Consensus 160 ~~~~d~~--~~fvGd~~gqvt~lr~~~~--~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~e 235 (404)
T KOG1409|consen 160 ALQFDAL--YAFVGDHSGQITMLKLEQN--GCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYE 235 (404)
T ss_pred CCceeeE--EEEecccccceEEEEEeec--CCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeee
Confidence 1111111 5566777777766655443 44688899999999999999999999999999999999999754433334
Q ss_pred ecCCCCCCcceeEEECCCCCEEEEeeccccccCCCceEEEEeCCCC
Q 048012 384 FEDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREKL 429 (616)
Q Consensus 384 ~~~~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~~ 429 (616)
+.+ +...|..+..-+--+.|++++ .||.|.+|+++..
T Consensus 236 l~g--h~~kV~~l~~~~~t~~l~S~~-------edg~i~~w~mn~~ 272 (404)
T KOG1409|consen 236 LQG--HNDKVQALSYAQHTRQLISCG-------EDGGIVVWNMNVK 272 (404)
T ss_pred ecc--chhhhhhhhhhhhheeeeecc-------CCCeEEEEeccce
Confidence 444 444488888888888899888 8999999998643
No 242
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.41 E-value=3.3e-11 Score=115.27 Aligned_cols=247 Identities=13% Similarity=0.160 Sum_probs=167.9
Q ss_pred CceEEEEecCCCCe--EEEEeCCCeEEEEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCC
Q 048012 197 HQVRNLSWSPTSDR--FLCVTGSAQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGS 274 (616)
Q Consensus 197 ~~v~~l~~sp~g~~--l~~~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~ 274 (616)
..|..++|.-+++. |+..+.+..+..+.+....+... ..++.........|..+.... ..|++|-.+|.
T Consensus 56 ~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~------~~~~~~~~l~~~~I~gl~~~d---g~Litc~~sG~ 126 (412)
T KOG3881|consen 56 DRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSS------LDDAKTVSLGTKSIKGLKLAD---GTLITCVSSGN 126 (412)
T ss_pred hhhhhheeecCCceeEeeccccCcccccccccCCccccc------cccccccccccccccchhhcC---CEEEEEecCCc
Confidence 34777888766543 33333666666666554332111 122334455566677666553 37899999999
Q ss_pred EEEEECCCccccceEEeeeccCCCCccEEEEEECCCC-CeEEEEeCC--CcEEEEeCCCCCCCCCceeeecCC-------
Q 048012 275 LRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWDCDG-KCIAGGIGD--GSIQVWNLKPGWGSRPDIHVEKGH------- 344 (616)
Q Consensus 275 v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g-~~l~~g~~d--g~I~iwd~~~~~~~~~~~~~~~~h------- 344 (616)
+.+|.+..+............. ..+..+.-++.. .++++|+.. ..+.|||+... ..++.+.
T Consensus 127 l~~~~~k~~d~hss~l~~la~g---~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~------~qiw~aKNvpnD~L 197 (412)
T KOG3881|consen 127 LQVRHDKSGDLHSSKLIKLATG---PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQS------KQIWSAKNVPNDRL 197 (412)
T ss_pred EEEEeccCCccccccceeeecC---CceeeeccCCCCCceEecCchhcccceeeeecccc------eeeeeccCCCCccc
Confidence 9999998544221111111111 145555555543 456668888 78999999863 2222221
Q ss_pred ----CCCeEEEEEcCC--CCeEEEEecCCcEEEEeCCCCCCcceEecCCCCCCcceeEEECCCCCEEEEeeccccccCCC
Q 048012 345 ----SDDITALKFSSD--GRILLSRSFDGSLKVWDLRKMKEPLKVFEDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTG 418 (616)
Q Consensus 345 ----~~~V~~l~~spd--g~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~d 418 (616)
.-+++.+.|-+. ...||++..-+.|++||.+.+++|+..+.... .+++++...|++++|++|. .-
T Consensus 198 ~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E--~~is~~~l~p~gn~Iy~gn-------~~ 268 (412)
T KOG3881|consen 198 GLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLE--NPISSTGLTPSGNFIYTGN-------TK 268 (412)
T ss_pred cceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEecccc--CcceeeeecCCCcEEEEec-------cc
Confidence 135788999987 88999999999999999999999999987754 4599999999999999999 88
Q ss_pred ceEEEEeCCCCceEEEEecCCCCCeEEEEEcCCCCcEEEEeccCCCCceEEEeccc
Q 048012 419 GLLCFYDREKLELVSRVGISPACSVVQCAWHPKLNQIFATAGDKSQGGTHILYDPR 474 (616)
Q Consensus 419 g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~~~~~~~v~~~~ 474 (616)
|.|..||++.++++...-..-.+.|.++..||..+.|++++- +..++|+|+.
T Consensus 269 g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GL----DRyvRIhD~k 320 (412)
T KOG3881|consen 269 GQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGL----DRYVRIHDIK 320 (412)
T ss_pred chhheecccCceeeccccCCccCCcceEEEcCCCceEEeecc----ceeEEEeecc
Confidence 999999999998876632234567888888888666666655 5566666654
No 243
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.41 E-value=7.6e-11 Score=124.16 Aligned_cols=238 Identities=18% Similarity=0.247 Sum_probs=144.4
Q ss_pred cEEEEeCCCCccccccceecCCCCCCceEEEEecCCCCeEEEEeCC---CeEEEEECCCCeeeeEeeCceeEeecccCCC
Q 048012 172 TVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSDRFLCVTGS---AQAKIYDRDGLTLGEFVKGDMYIRDLKNTKG 248 (616)
Q Consensus 172 ~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~s~d---~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 248 (616)
.|.++|..+.+. +.+ ......+.+..|+|+|++|+..+.. ..|.+||+.+++... +....+
T Consensus 199 ~l~i~d~dG~~~-----~~l-~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~----------lt~~~g 262 (448)
T PRK04792 199 QLMIADYDGYNE-----QML-LRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK----------VTSFPG 262 (448)
T ss_pred EEEEEeCCCCCc-----eEe-ecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE----------ecCCCC
Confidence 567777765421 111 1234568899999999999877543 368888987665321 222222
Q ss_pred cccceEEEEEcCCCCCEEEEEeCCCC--EEEEECCCccccceEEeeeccCCCCccEEEEEECCCCCeEEEEeC-CC--cE
Q 048012 249 HICGLTCGEWHPKTKETILTSSEDGS--LRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWDCDGKCIAGGIG-DG--SI 323 (616)
Q Consensus 249 h~~~v~~~~~~p~~~~~l~s~s~Dg~--v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~g~~-dg--~I 323 (616)
+ .....|+|++..++++.+.++. |++||+.++.. ..+. .+.......+|+|+|+.|+..+. +| .|
T Consensus 263 ~---~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~-~~lt------~~~~~~~~p~wSpDG~~I~f~s~~~g~~~I 332 (448)
T PRK04792 263 I---NGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKAL-TRIT------RHRAIDTEPSWHPDGKSLIFTSERGGKPQI 332 (448)
T ss_pred C---cCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCe-EECc------cCCCCccceEECCCCCEEEEEECCCCCceE
Confidence 2 2367899999766667777775 77778876432 1111 11124567889999998876654 34 46
Q ss_pred EEEeCCCCCCCCCceeeecCCCCCeEEEEEcCCCCeEEEEecC-C--cEEEEeCCCCCCcceEecCCCCCCcceeEEECC
Q 048012 324 QVWNLKPGWGSRPDIHVEKGHSDDITALKFSSDGRILLSRSFD-G--SLKVWDLRKMKEPLKVFEDLPNNYAQTNVAFSP 400 (616)
Q Consensus 324 ~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~D-g--~v~lwd~~~~~~~~~~~~~~~~~~~v~~v~fsp 400 (616)
+++|+.++ . ...+..+.......+|+|||++|+..+.+ + .|.++|+.++. ...+... .......|+|
T Consensus 333 y~~dl~~g----~-~~~Lt~~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~--~~~lt~~---~~d~~ps~sp 402 (448)
T PRK04792 333 YRVNLASG----K-VSRLTFEGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGA--MQVLTST---RLDESPSVAP 402 (448)
T ss_pred EEEECCCC----C-EEEEecCCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCC--eEEccCC---CCCCCceECC
Confidence 66677655 1 22222222234567999999998877653 4 35556776543 2233221 1133568999
Q ss_pred CCCEEEEeeccccccCCCceEEEEeCCCCceEEEEecCCCCCeEEEEEcCC
Q 048012 401 DEQLFLTGTSVERESTTGGLLCFYDREKLELVSRVGISPACSVVQCAWHPK 451 (616)
Q Consensus 401 dg~~l~~gs~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~ 451 (616)
||++|+..+.. .....|++++. ++.....+.. +.+.+...+|+|-
T Consensus 403 dG~~I~~~~~~----~g~~~l~~~~~-~G~~~~~l~~-~~g~~~~p~Wsp~ 447 (448)
T PRK04792 403 NGTMVIYSTTY----QGKQVLAAVSI-DGRFKARLPA-GQGEVKSPAWSPF 447 (448)
T ss_pred CCCEEEEEEec----CCceEEEEEEC-CCCceEECcC-CCCCcCCCccCCC
Confidence 99999887630 01235778886 5666666643 3455677788874
No 244
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.40 E-value=1.3e-09 Score=104.05 Aligned_cols=284 Identities=14% Similarity=0.181 Sum_probs=182.1
Q ss_pred ecCCcccEEEEEECCCCCEEEEEEcC---CcEEEEeCCCCccccccceecCCCCCCceEEEEecCCCCeEEEEeC-CCeE
Q 048012 145 LKGHTKIVSALAVDHSGSRVLSGSYD---YTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSDRFLCVTG-SAQA 220 (616)
Q Consensus 145 l~~H~~~V~~v~~sp~g~~lasgs~D---g~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~s~-d~~v 220 (616)
+-.+...++-|+|+|++++|.++-.+ |.|-.|.+......+..+.. ....+.+-..++++++|++|+++.. .+.|
T Consensus 35 ~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~-~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v 113 (346)
T COG2706 35 LVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNR-QTLPGSPPCYVSVDEDGRFVFVANYHSGSV 113 (346)
T ss_pred hccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeec-cccCCCCCeEEEECCCCCEEEEEEccCceE
Confidence 34567788999999999999988654 77888888753233322222 2234555588999999999998876 4899
Q ss_pred EEEECCC-CeeeeEeeCceeEeecccCCCcccc----------eEEEEEcCCCCCEEEEEeC-CCCEEEEECCCccccce
Q 048012 221 KIYDRDG-LTLGEFVKGDMYIRDLKNTKGHICG----------LTCGEWHPKTKETILTSSE-DGSLRIWDVNEFKSQKQ 288 (616)
Q Consensus 221 ~vwd~~~-~~~~~~~~~~~~~~~~~~~~~h~~~----------v~~~~~~p~~~~~l~s~s~-Dg~v~iwd~~~~~~~~~ 288 (616)
.++-+.. +.+.... ....|... +.+..+.|++. +|+++.. --.|.+|++..++....
T Consensus 114 ~v~p~~~dG~l~~~v----------~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~-~l~v~DLG~Dri~~y~~~dg~L~~~ 182 (346)
T COG2706 114 SVYPLQADGSLQPVV----------QVVKHTGSGPHERQESPHVHSANFTPDGR-YLVVPDLGTDRIFLYDLDDGKLTPA 182 (346)
T ss_pred EEEEcccCCccccce----------eeeecCCCCCCccccCCccceeeeCCCCC-EEEEeecCCceEEEEEcccCccccc
Confidence 9998854 3332211 11122222 77889999885 6666542 34599999986543322
Q ss_pred EEeeeccCCCCccEEEEEECCCCCeEEEEeC-CCcEEEEeCCCCCCCCCceeeec------CCCCCeEEEEEcCCCCeEE
Q 048012 289 VIKPKLARPGRVAVTTCAWDCDGKCIAGGIG-DGSIQVWNLKPGWGSRPDIHVEK------GHSDDITALKFSSDGRILL 361 (616)
Q Consensus 289 ~~~~~~~~~~~~~v~~~~~sp~g~~l~~g~~-dg~I~iwd~~~~~~~~~~~~~~~------~h~~~V~~l~~spdg~~l~ 361 (616)
..... ..+ .....++|+|+++++.+.++ +++|-+|...........++... .-..+...|..++||++|.
T Consensus 183 ~~~~v--~~G-~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLY 259 (346)
T COG2706 183 DPAEV--KPG-AGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLY 259 (346)
T ss_pred ccccc--CCC-CCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEE
Confidence 21111 111 24678999999999877664 89999999876311111222111 1224577899999999998
Q ss_pred EEec-CCcEEEEeCCCCCCcceEecCCCC-CCcceeEEECCCCCEEEEeeccccccCCCceEEEEeC--CCCceEEEEec
Q 048012 362 SRSF-DGSLKVWDLRKMKEPLKVFEDLPN-NYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDR--EKLELVSRVGI 437 (616)
Q Consensus 362 s~s~-Dg~v~lwd~~~~~~~~~~~~~~~~-~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~--~~~~~~~~~~~ 437 (616)
++.. ...|.+|.+......+........ ....+.+.|++.+++|+++.. .+..|.+|.+ .+|++-.....
T Consensus 260 asNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q------~sd~i~vf~~d~~TG~L~~~~~~ 333 (346)
T COG2706 260 ASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQ------KSDNITVFERDKETGRLTLLGRY 333 (346)
T ss_pred EecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEcc------CCCcEEEEEEcCCCceEEecccc
Confidence 8752 347888888765444444443332 333788999999999999984 4566888865 45655433332
Q ss_pred CCCCCeEEEEEc
Q 048012 438 SPACSVVQCAWH 449 (616)
Q Consensus 438 ~~~~~v~~~~~~ 449 (616)
.......|+.|.
T Consensus 334 ~~~p~Pvcv~f~ 345 (346)
T COG2706 334 AVVPEPVCVKFL 345 (346)
T ss_pred cCCCCcEEEEEc
Confidence 233445666664
No 245
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.37 E-value=2.4e-10 Score=120.67 Aligned_cols=238 Identities=18% Similarity=0.253 Sum_probs=146.1
Q ss_pred cEEEEeCCCCccccccceecCCCCCCceEEEEecCCCCeEEEEeCC---CeEEEEECCCCeeeeEeeCceeEeecccCCC
Q 048012 172 TVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSDRFLCVTGS---AQAKIYDRDGLTLGEFVKGDMYIRDLKNTKG 248 (616)
Q Consensus 172 ~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~s~d---~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 248 (616)
.|.++|..+.. .+.+. .+...+....|+|+|++|+..+.. ..|.+|++.++.... +....+
T Consensus 180 ~l~~~d~~g~~-----~~~l~-~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~----------l~~~~g 243 (430)
T PRK00178 180 TLQRSDYDGAR-----AVTLL-QSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ----------ITNFEG 243 (430)
T ss_pred EEEEECCCCCC-----ceEEe-cCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE----------ccCCCC
Confidence 47777776542 11121 234568999999999999887643 478899998765422 222222
Q ss_pred cccceEEEEEcCCCCCEEEEEeCCC--CEEEEECCCccccceEEeeeccCCCCccEEEEEECCCCCeEEEEeC-CC--cE
Q 048012 249 HICGLTCGEWHPKTKETILTSSEDG--SLRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWDCDGKCIAGGIG-DG--SI 323 (616)
Q Consensus 249 h~~~v~~~~~~p~~~~~l~s~s~Dg--~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~g~~-dg--~I 323 (616)
.+....|+|++..++++.+.++ .|++||+.++... .+. .+........|+|+|+.|+..+. +| .|
T Consensus 244 ---~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~-~lt------~~~~~~~~~~~spDg~~i~f~s~~~g~~~i 313 (430)
T PRK00178 244 ---LNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLS-RVT------NHPAIDTEPFWGKDGRTLYFTSDRGGKPQI 313 (430)
T ss_pred ---CcCCeEECCCCCEEEEEEccCCCceEEEEECCCCCeE-Ecc------cCCCCcCCeEECCCCCEEEEEECCCCCceE
Confidence 3446899999875666666665 5888898765422 221 11223556789999998776654 33 57
Q ss_pred EEEeCCCCCCCCCceeeecCCCCCeEEEEEcCCCCeEEEEecC-C--cEEEEeCCCCCCcceEecCCCCCCcceeEEECC
Q 048012 324 QVWNLKPGWGSRPDIHVEKGHSDDITALKFSSDGRILLSRSFD-G--SLKVWDLRKMKEPLKVFEDLPNNYAQTNVAFSP 400 (616)
Q Consensus 324 ~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~D-g--~v~lwd~~~~~~~~~~~~~~~~~~~v~~v~fsp 400 (616)
+++|+.++. . ..+...........|+|||++|+..+.+ + .|.+||+.++. .+.+... .......|+|
T Consensus 314 y~~d~~~g~----~-~~lt~~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~--~~~lt~~---~~~~~p~~sp 383 (430)
T PRK00178 314 YKVNVNGGR----A-ERVTFVGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGS--VRILTDT---SLDESPSVAP 383 (430)
T ss_pred EEEECCCCC----E-EEeecCCCCccceEECCCCCEEEEEEccCCceEEEEEECCCCC--EEEccCC---CCCCCceECC
Confidence 777876651 1 1111112234567899999999887753 3 47888987643 2333221 1233568999
Q ss_pred CCCEEEEeeccccccCCCceEEEEeCCCCceEEEEecCCCCCeEEEEEcCC
Q 048012 401 DEQLFLTGTSVERESTTGGLLCFYDREKLELVSRVGISPACSVVQCAWHPK 451 (616)
Q Consensus 401 dg~~l~~gs~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~ 451 (616)
||++|+..+.. .....|+++++. +...+.+.. +.+.+...+|+|-
T Consensus 384 dg~~i~~~~~~----~g~~~l~~~~~~-g~~~~~l~~-~~g~~~~p~ws~~ 428 (430)
T PRK00178 384 NGTMLIYATRQ----QGRGVLMLVSIN-GRVRLPLPT-AQGEVREPSWSPY 428 (430)
T ss_pred CCCEEEEEEec----CCceEEEEEECC-CCceEECcC-CCCCcCCCccCCC
Confidence 99999887630 022457777874 343444432 3455677778764
No 246
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.36 E-value=6.2e-10 Score=116.37 Aligned_cols=245 Identities=12% Similarity=0.121 Sum_probs=145.1
Q ss_pred CcEEEEeCCCCccccccceecCCCCCCceEEEEecCCCCeEE--EEeC---CCeEEEEECCCCeeeeEeeCceeEeeccc
Q 048012 171 YTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSDRFL--CVTG---SAQAKIYDRDGLTLGEFVKGDMYIRDLKN 245 (616)
Q Consensus 171 g~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~--~~s~---d~~v~vwd~~~~~~~~~~~~~~~~~~~~~ 245 (616)
+.|.+.|..+.+. +.+. .....+.+-.|||||+.++ ..+. ...|.+.++.++.... +..
T Consensus 165 ~~l~~~d~dG~~~-----~~lt-~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~----------lt~ 228 (428)
T PRK01029 165 GELWSVDYDGQNL-----RPLT-QEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKK----------ILA 228 (428)
T ss_pred ceEEEEcCCCCCc-----eEcc-cCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceE----------eec
Confidence 3566777765431 1222 1334467789999998632 2332 3478888888765322 222
Q ss_pred CCCcccceEEEEEcCCCCCEEEEEeCCC----CEEEEECCCcc--ccceEEeeeccCCCCccEEEEEECCCCCeEEEEe-
Q 048012 246 TKGHICGLTCGEWHPKTKETILTSSEDG----SLRIWDVNEFK--SQKQVIKPKLARPGRVAVTTCAWDCDGKCIAGGI- 318 (616)
Q Consensus 246 ~~~h~~~v~~~~~~p~~~~~l~s~s~Dg----~v~iwd~~~~~--~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~g~- 318 (616)
+.+ ......|+|+|..++++...+| .+.+|++..+. ....+... ........+|+|||+.|+..+
T Consensus 229 ~~g---~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~-----~~~~~~~p~wSPDG~~Laf~s~ 300 (428)
T PRK01029 229 LQG---NQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNE-----AFGTQGNPSFSPDGTRLVFVSN 300 (428)
T ss_pred CCC---CccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecC-----CCCCcCCeEECCCCCEEEEEEC
Confidence 233 3345799999976655554333 34446765431 11222111 111235679999999877665
Q ss_pred CCCcEEEE--eCCCCCCCCCceeeecCCCCCeEEEEEcCCCCeEEEEecC---CcEEEEeCCCCCCcceEecCCCCCCcc
Q 048012 319 GDGSIQVW--NLKPGWGSRPDIHVEKGHSDDITALKFSSDGRILLSRSFD---GSLKVWDLRKMKEPLKVFEDLPNNYAQ 393 (616)
Q Consensus 319 ~dg~I~iw--d~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~D---g~v~lwd~~~~~~~~~~~~~~~~~~~v 393 (616)
.+|...|| ++.... .....+..+...+....|+|||++|+..+.+ ..|.+||+.++.. ..+... ...+
T Consensus 301 ~~g~~~ly~~~~~~~g---~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~--~~Lt~~--~~~~ 373 (428)
T PRK01029 301 KDGRPRIYIMQIDPEG---QSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRD--YQLTTS--PENK 373 (428)
T ss_pred CCCCceEEEEECcccc---cceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCe--EEccCC--CCCc
Confidence 46755555 443210 1233344445567889999999998877643 3689999986542 223221 2236
Q ss_pred eeEEECCCCCEEEEeeccccccCCCceEEEEeCCCCceEEEEecCCCCCeEEEEEcCCC
Q 048012 394 TNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREKLELVSRVGISPACSVVQCAWHPKL 452 (616)
Q Consensus 394 ~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~ 452 (616)
....|+|||++|+.... ......|++||+.+++...... ..+.+...+|+|..
T Consensus 374 ~~p~wSpDG~~L~f~~~----~~g~~~L~~vdl~~g~~~~Lt~--~~g~~~~p~Ws~~~ 426 (428)
T PRK01029 374 ESPSWAIDSLHLVYSAG----NSNESELYLISLITKKTRKIVI--GSGEKRFPSWGAFP 426 (428)
T ss_pred cceEECCCCCEEEEEEC----CCCCceEEEEECCCCCEEEeec--CCCcccCceecCCC
Confidence 77999999999886552 1134679999998877544332 33456777888753
No 247
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.35 E-value=2.3e-10 Score=120.63 Aligned_cols=204 Identities=16% Similarity=0.114 Sum_probs=131.5
Q ss_pred CeEEEEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCC---CCEEEEECCCccccceEEeeec
Q 048012 218 AQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSED---GSLRIWDVNEFKSQKQVIKPKL 294 (616)
Q Consensus 218 ~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~D---g~v~iwd~~~~~~~~~~~~~~~ 294 (616)
..|.++|.++..... +..+...+....|+|++. .|+.++.+ ..|++||+.++.... +. .
T Consensus 170 ~~l~~~d~~g~~~~~-------------l~~~~~~~~~p~~Spdg~-~la~~~~~~~~~~i~v~d~~~g~~~~-~~-~-- 231 (417)
T TIGR02800 170 YELQVADYDGANPQT-------------ITRSREPILSPAWSPDGQ-KLAYVSFESGKPEIYVQDLATGQREK-VA-S-- 231 (417)
T ss_pred ceEEEEcCCCCCCEE-------------eecCCCceecccCCCCCC-EEEEEEcCCCCcEEEEEECCCCCEEE-ee-c--
Confidence 357777776554322 234455678889999986 55555433 479999998754321 11 1
Q ss_pred cCCCCccEEEEEECCCCCeEEE-EeCCC--cEEEEeCCCCCCCCCceeeecCCCCCeEEEEEcCCCCeEEEEecC-C--c
Q 048012 295 ARPGRVAVTTCAWDCDGKCIAG-GIGDG--SIQVWNLKPGWGSRPDIHVEKGHSDDITALKFSSDGRILLSRSFD-G--S 368 (616)
Q Consensus 295 ~~~~~~~v~~~~~sp~g~~l~~-g~~dg--~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~D-g--~ 368 (616)
....+.+++|+|+|+.|+. .+.++ .|++||+.++ ....+..+........|+|||+.|+..+.. + .
T Consensus 232 ---~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~-----~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~ 303 (417)
T TIGR02800 232 ---FPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGK-----QLTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQ 303 (417)
T ss_pred ---CCCCccceEECCCCCEEEEEECCCCCccEEEEECCCC-----CEEECCCCCCCCCCEEECCCCCEEEEEECCCCCce
Confidence 1124567899999997764 44444 5888998865 233344454555678999999988876643 3 5
Q ss_pred EEEEeCCCCCCcceEecCCCCCCcceeEEECCCCCEEEEeeccccccCCCc---eEEEEeCCCCceEEEEecCCCCCeEE
Q 048012 369 LKVWDLRKMKEPLKVFEDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGG---LLCFYDREKLELVSRVGISPACSVVQ 445 (616)
Q Consensus 369 v~lwd~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~~v~~ 445 (616)
|.+||+.... ...+.. ....+..+.|+|+|++|+.+. .++ .|.+||+.++... .+. .......
T Consensus 304 iy~~d~~~~~--~~~l~~--~~~~~~~~~~spdg~~i~~~~-------~~~~~~~i~~~d~~~~~~~-~l~--~~~~~~~ 369 (417)
T TIGR02800 304 IYMMDADGGE--VRRLTF--RGGYNASPSWSPDGDLIAFVH-------REGGGFNIAVMDLDGGGER-VLT--DTGLDES 369 (417)
T ss_pred EEEEECCCCC--EEEeec--CCCCccCeEECCCCCEEEEEE-------ccCCceEEEEEeCCCCCeE-Ecc--CCCCCCC
Confidence 7778877543 222222 223367789999999999887 333 7999999886542 222 1223445
Q ss_pred EEEcCCCCcEEEEecc
Q 048012 446 CAWHPKLNQIFATAGD 461 (616)
Q Consensus 446 ~~~~p~~~~l~~~~~d 461 (616)
..|+|+++.|+.++.+
T Consensus 370 p~~spdg~~l~~~~~~ 385 (417)
T TIGR02800 370 PSFAPNGRMILYATTR 385 (417)
T ss_pred ceECCCCCEEEEEEeC
Confidence 6899998888887764
No 248
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.35 E-value=8.3e-09 Score=98.73 Aligned_cols=283 Identities=12% Similarity=0.155 Sum_probs=179.3
Q ss_pred CCcEEEEeCCCCccccccceecCCCCCCceEEEEecCCCCeEEEEeCC---CeEEEEECCC--CeeeeEeeCceeEeecc
Q 048012 170 DYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSDRFLCVTGS---AQAKIYDRDG--LTLGEFVKGDMYIRDLK 244 (616)
Q Consensus 170 Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~s~d---~~v~vwd~~~--~~~~~~~~~~~~~~~~~ 244 (616)
+.-|++|++.+....+.....+ .....++-|+|++++++|.++-.+ +.|..|.++. +.+... ...
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v--~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~l--------n~~ 84 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLV--AELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFL--------NRQ 84 (346)
T ss_pred CCceEEEEEeCcccccchhhhc--cccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEe--------ecc
Confidence 4669999998544333333222 234458889999999998887654 6777787775 343222 112
Q ss_pred cCCCcccceEEEEEcCCCCCEEEEE-eCCCCEEEEECCCccccceEEeee---cc----CCCCccEEEEEECCCCCeEEE
Q 048012 245 NTKGHICGLTCGEWHPKTKETILTS-SEDGSLRIWDVNEFKSQKQVIKPK---LA----RPGRVAVTTCAWDCDGKCIAG 316 (616)
Q Consensus 245 ~~~~h~~~v~~~~~~p~~~~~l~s~-s~Dg~v~iwd~~~~~~~~~~~~~~---~~----~~~~~~v~~~~~sp~g~~l~~ 316 (616)
.+.++. -+.+++++++. +|+++ ..-|.|.++-++....+....... .. +.....+.+..+.|++++|++
T Consensus 85 ~~~g~~--p~yvsvd~~g~-~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v 161 (346)
T COG2706 85 TLPGSP--PCYVSVDEDGR-FVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVV 161 (346)
T ss_pred ccCCCC--CeEEEECCCCC-EEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEE
Confidence 223322 27788999885 55554 456889999987643332221111 11 011123778899999999888
Q ss_pred EeC-CCcEEEEeCCCCCCCCCceeeecCCCCCeEEEEEcCCCCeEEEEe-cCCcEEEEeCCCCCCcceEec---CC----
Q 048012 317 GIG-DGSIQVWNLKPGWGSRPDIHVEKGHSDDITALKFSSDGRILLSRS-FDGSLKVWDLRKMKEPLKVFE---DL---- 387 (616)
Q Consensus 317 g~~-dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s-~Dg~v~lwd~~~~~~~~~~~~---~~---- 387 (616)
... --.|.+|++..+.-.......+ .-...-+.|.|+|++++..... .+++|.+|........+..++ .+
T Consensus 162 ~DLG~Dri~~y~~~dg~L~~~~~~~v-~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF 240 (346)
T COG2706 162 PDLGTDRIFLYDLDDGKLTPADPAEV-KPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDF 240 (346)
T ss_pred eecCCceEEEEEcccCcccccccccc-CCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCcccc
Confidence 753 2369999998763111111222 3334578999999999988776 589999999887432233222 22
Q ss_pred CCCCcceeEEECCCCCEEEEeeccccccCCCceEEEEeCCCC-ceEEEEec-C-CCCCeEEEEEcCCCCcEEEEeccCCC
Q 048012 388 PNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREKL-ELVSRVGI-S-PACSVVQCAWHPKLNQIFATAGDKSQ 464 (616)
Q Consensus 388 ~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~~-~~~~~~~~-~-~~~~v~~~~~~p~~~~l~~~~~d~~~ 464 (616)
....+...|.+++||++|.++.. ....|.+|.+... ..+..+.. + +........+++.++.|+++..+
T Consensus 241 ~g~~~~aaIhis~dGrFLYasNR------g~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~--- 311 (346)
T COG2706 241 TGTNWAAAIHISPDGRFLYASNR------GHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQK--- 311 (346)
T ss_pred CCCCceeEEEECCCCCEEEEecC------CCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccC---
Confidence 23455778999999999999873 4457888876532 22222221 1 22336788899999999998886
Q ss_pred CceEEEecccC
Q 048012 465 GGTHILYDPRL 475 (616)
Q Consensus 465 ~~~~~v~~~~~ 475 (616)
+..+.||...-
T Consensus 312 sd~i~vf~~d~ 322 (346)
T COG2706 312 SDNITVFERDK 322 (346)
T ss_pred CCcEEEEEEcC
Confidence 66677877653
No 249
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.34 E-value=2.2e-11 Score=124.75 Aligned_cols=274 Identities=19% Similarity=0.282 Sum_probs=182.9
Q ss_pred CcccEEEEEECCCCCEEEEEEcCCcEEEEeCCCCccccccceecCCCCCCceEEEEecCCC--CeEEEEeCCCeEEEEEC
Q 048012 148 HTKIVSALAVDHSGSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTS--DRFLCVTGSAQAKIYDR 225 (616)
Q Consensus 148 H~~~V~~v~~sp~g~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g--~~l~~~s~d~~v~vwd~ 225 (616)
-.+.+.++.++|.|+-+|.++.-| +.+-|+...-...+-+. ....-.|-.+.|++.. .+-++........+|++
T Consensus 23 v~~~~~a~si~p~grdi~lAsr~g-l~i~dld~p~~ppr~l~---h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnl 98 (1081)
T KOG0309|consen 23 VDGGFNAVSINPSGRDIVLASRQG-LYIIDLDDPFTPPRWLH---HITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNL 98 (1081)
T ss_pred ecCcccceeeccccchhhhhhhcC-eEEEeccCCCCCceeee---ccCcchhcceecccCCCCceeEEecCcchhhhhhh
Confidence 357889999999999999998776 45566654322222222 2222347778888764 45566666677788987
Q ss_pred CCCe--eeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEEEECCCccccceEEeeeccCCCCccEE
Q 048012 226 DGLT--LGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPGRVAVT 303 (616)
Q Consensus 226 ~~~~--~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~ 303 (616)
.... ..+| .+.+|...|+.+.|+|....++++++.|..|..||++.......... .-+....
T Consensus 99 A~ss~~aIef-----------~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~-----~w~s~as 162 (1081)
T KOG0309|consen 99 AKSSSNAIEF-----------VLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTS-----SWRSAAS 162 (1081)
T ss_pred hcCCccceEE-----------EEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeee-----cccccCc
Confidence 6322 2222 25799999999999999999999999999999999987543222111 1122456
Q ss_pred EEEECCCCCeEEEEeCCCcEEEEeCCCCCCCCCceeeecCCCCCeEEEEEcC-CCCeEEEEecCCcEEEEeCCCCCCcce
Q 048012 304 TCAWDCDGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHSDDITALKFSS-DGRILLSRSFDGSLKVWDLRKMKEPLK 382 (616)
Q Consensus 304 ~~~~sp~g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp-dg~~l~s~s~Dg~v~lwd~~~~~~~~~ 382 (616)
.+.|+-..-.+.+.+....|++||++.+. .++..+++|...|++++|.. -...+.+++.|++|++||..+......
T Consensus 163 qVkwnyk~p~vlasshg~~i~vwd~r~gs---~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~ 239 (1081)
T KOG0309|consen 163 QVKWNYKDPNVLASSHGNDIFVWDLRKGS---TPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESK 239 (1081)
T ss_pred eeeecccCcchhhhccCCceEEEeccCCC---cceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccc
Confidence 78888755455555667789999999874 56777888999999999976 334688999999999999876433221
Q ss_pred EecCCCCCCcceeEEECCCCCEEEEeeccccccCCCceEEEEeCC---------C-CceEEEEecCCCCCeEEEEEcCCC
Q 048012 383 VFEDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDRE---------K-LELVSRVGISPACSVVQCAWHPKL 452 (616)
Q Consensus 383 ~~~~~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~---------~-~~~~~~~~~~~~~~v~~~~~~p~~ 452 (616)
. ..+..++|..-.|-|-|.-.++--. ..+..+.+++.+ + .+.++++.. |...|....|-..+
T Consensus 240 ~--~vtt~~piw~~r~~Pfg~g~~~mp~-----~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~G-H~D~V~eFlWR~r~ 311 (1081)
T KOG0309|consen 240 R--TVTTNFPIWRGRYLPFGEGYCIMPM-----VGGNMVPQLRCENSDLEWNVFDLNTPVHTFVG-HDDVVLEFLWRKRK 311 (1081)
T ss_pred e--eccccCcceeccccccCceeEeccc-----cCCeeeeeccccchhhhhccccCCcceeeecC-cchHHHHHhhhhcc
Confidence 1 1234566777788886654443321 023344444433 2 245666654 66777777776553
No 250
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.32 E-value=1.2e-10 Score=117.33 Aligned_cols=191 Identities=16% Similarity=0.205 Sum_probs=143.1
Q ss_pred CCCEEEEEeCCCCEEEEECCCccccceEEeeeccCCCCccEEEEEE------CC--------------CCCeEEEEeCCC
Q 048012 262 TKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAW------DC--------------DGKCIAGGIGDG 321 (616)
Q Consensus 262 ~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~------sp--------------~g~~l~~g~~dg 321 (616)
...+++....||.+|+||....+....+...... .+ ..++..| +| +-..|+-|...|
T Consensus 4 ~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~-s~--t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g 80 (541)
T KOG4547|consen 4 ALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASL-SG--TCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQG 80 (541)
T ss_pred hhheEeecCCCCeEEEEEccCceeeeeeccchhc-cC--cceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCc
Confidence 4468999999999999999887655544322211 11 2333333 22 233688899999
Q ss_pred cEEEEeCCCCCCCCCceee--ecCCCCCeEEEEEcCCCCeEEEEecCCcEEEEeCCCCCCcceEecCCCCCCcceeEEEC
Q 048012 322 SIQVWNLKPGWGSRPDIHV--EKGHSDDITALKFSSDGRILLSRSFDGSLKVWDLRKMKEPLKVFEDLPNNYAQTNVAFS 399 (616)
Q Consensus 322 ~I~iwd~~~~~~~~~~~~~--~~~h~~~V~~l~~spdg~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~v~~v~fs 399 (616)
.|.+|++..+ ..... -..|.+.|.++.++.+-..|.+++.|+.+..|+.... ..++.+.... ..+.+++++
T Consensus 81 ~v~~ys~~~g----~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~-~~~~~~~~~~--~~~~sl~is 153 (541)
T KOG4547|consen 81 SVLLYSVAGG----EITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEK-VIIRIWKEQK--PLVSSLCIS 153 (541)
T ss_pred cEEEEEecCC----eEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccc-eeeeeeccCC--CccceEEEc
Confidence 9999999887 33333 3579999999999999999999999999999999863 4455555433 338899999
Q ss_pred CCCCEEEEeeccccccCCCceEEEEeCCCCceEEEEecCCCCCeEEEEEcCC-----CCcEEEEeccCCCCceEEEeccc
Q 048012 400 PDEQLFLTGTSVERESTTGGLLCFYDREKLELVSRVGISPACSVVQCAWHPK-----LNQIFATAGDKSQGGTHILYDPR 474 (616)
Q Consensus 400 pdg~~l~~gs~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~-----~~~l~~~~~d~~~~~~~~v~~~~ 474 (616)
|||..|++++ +.|.+||+++.+.+.++.. |.+.|.++.|--. |.+++++..- ...+.+|-+.
T Consensus 154 ~D~~~l~~as---------~~ik~~~~~~kevv~~ftg-h~s~v~t~~f~~~~~g~~G~~vLssa~~---~r~i~~w~v~ 220 (541)
T KOG4547|consen 154 PDGKILLTAS---------RQIKVLDIETKEVVITFTG-HGSPVRTLSFTTLIDGIIGKYVLSSAAA---ERGITVWVVE 220 (541)
T ss_pred CCCCEEEecc---------ceEEEEEccCceEEEEecC-CCcceEEEEEEEeccccccceeeecccc---ccceeEEEEE
Confidence 9999999987 7899999999999999985 7889999999877 6777776652 3445555544
Q ss_pred C
Q 048012 475 L 475 (616)
Q Consensus 475 ~ 475 (616)
+
T Consensus 221 ~ 221 (541)
T KOG4547|consen 221 K 221 (541)
T ss_pred c
Confidence 3
No 251
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.31 E-value=1.8e-09 Score=100.84 Aligned_cols=245 Identities=16% Similarity=0.184 Sum_probs=149.0
Q ss_pred eEEEEecCCCCeEEEEeCCCeEEEEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCC------
Q 048012 199 VRNLSWSPTSDRFLCVTGSAQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSED------ 272 (616)
Q Consensus 199 v~~l~~sp~g~~l~~~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~D------ 272 (616)
..+++|+.|..-++++..+ -.+||+.+-..... -+....-.-.+.-+-|-. ..+.+.|+.+
T Consensus 8 ~lsvs~NQD~ScFava~~~-Gfriyn~~P~ke~~----------~r~~~~~G~~~veMLfR~--N~laLVGGg~~pky~p 74 (346)
T KOG2111|consen 8 TLSVSFNQDHSCFAVATDT-GFRIYNCDPFKESA----------SRQFIDGGFKIVEMLFRS--NYLALVGGGSRPKYPP 74 (346)
T ss_pred eeEEEEccCCceEEEEecC-ceEEEecCchhhhh----------hhccccCchhhhhHhhhh--ceEEEecCCCCCCCCC
Confidence 5669999998888766654 57899987422100 000000001222222322 1234445443
Q ss_pred CCEEEEECCCccccceEEeeeccCCCCccEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCCCCCceeeecCC--CCCeEE
Q 048012 273 GSLRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWDCDGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGH--SDDITA 350 (616)
Q Consensus 273 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~h--~~~V~~ 350 (616)
..|.|||-...+++..+.. ...|.++.+.++ .|++.- .+.|++|...... +.+..+..- .....+
T Consensus 75 NkviIWDD~k~~~i~el~f-------~~~I~~V~l~r~--riVvvl-~~~I~VytF~~n~---k~l~~~et~~NPkGlC~ 141 (346)
T KOG2111|consen 75 NKVIIWDDLKERCIIELSF-------NSEIKAVKLRRD--RIVVVL-ENKIYVYTFPDNP---KLLHVIETRSNPKGLCS 141 (346)
T ss_pred ceEEEEecccCcEEEEEEe-------ccceeeEEEcCC--eEEEEe-cCeEEEEEcCCCh---hheeeeecccCCCceEe
Confidence 4699999544333333321 127899988764 444443 6889999987541 223322221 122434
Q ss_pred EEEcCCCCeEEEEe-cCCcEEEEeCCCCCC-cceEecCCCCCCcceeEEECCCCCEEEEeeccccccCCCceEEEEeCCC
Q 048012 351 LKFSSDGRILLSRS-FDGSLKVWDLRKMKE-PLKVFEDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREK 428 (616)
Q Consensus 351 l~~spdg~~l~s~s-~Dg~v~lwd~~~~~~-~~~~~~~~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~ 428 (616)
++-+-+..+||.=| .-|.|+|-|+..... +...+..| ...|.|++++-+|.+||+++. .+-.|+|||..+
T Consensus 142 ~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH--~s~Iacv~Ln~~Gt~vATaSt------kGTLIRIFdt~~ 213 (346)
T KOG2111|consen 142 LCPTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAH--DSDIACVALNLQGTLVATAST------KGTLIRIFDTED 213 (346)
T ss_pred ecCCCCceEEEcCCCccceEEEEEhhhcCcCCceEEEcc--cCceeEEEEcCCccEEEEecc------CcEEEEEEEcCC
Confidence 43333444555433 458999999986543 33555554 455999999999999999993 445689999999
Q ss_pred CceEEEEecC-CCCCeEEEEEcCCCCcEEEEeccCCCCceEEEecccCCCCCcE
Q 048012 429 LELVSRVGIS-PACSVVQCAWHPKLNQIFATAGDKSQGGTHILYDPRLSERGAL 481 (616)
Q Consensus 429 ~~~~~~~~~~-~~~~v~~~~~~p~~~~l~~~~~d~~~~~~~~v~~~~~s~~g~~ 481 (616)
|++++.+.-. ....|.+++|+|+..+|++++. -+++.|+.+.-.+.+..
T Consensus 214 g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSd----KgTlHiF~l~~~~~~~~ 263 (346)
T KOG2111|consen 214 GTLLQELRRGVDRADIYCIAFSPNSSWLAVSSD----KGTLHIFSLRDTENTED 263 (346)
T ss_pred CcEeeeeecCCchheEEEEEeCCCccEEEEEcC----CCeEEEEEeecCCCCcc
Confidence 9999998532 2356888888888777777665 66777777765444433
No 252
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.30 E-value=6e-10 Score=113.96 Aligned_cols=287 Identities=11% Similarity=0.174 Sum_probs=200.9
Q ss_pred ccEEEEEECCCCCEEEEEEcCCcEEEEeCCCCcccc----------ccceecCCCCCCceEEEEecCCCCeEEEEeCCCe
Q 048012 150 KIVSALAVDHSGSRVLSGSYDYTVRMYDFQGMNSRL----------QSFRQLEPSEGHQVRNLSWSPTSDRFLCVTGSAQ 219 (616)
Q Consensus 150 ~~V~~v~~sp~g~~lasgs~Dg~i~iwd~~~~~~~~----------~~~~~~~~~~~~~v~~l~~sp~g~~l~~~s~d~~ 219 (616)
....|+.|+....++|+|+.||.++|-.+.+..... ....+...+|...|..+.|+...+.|-+...+|.
T Consensus 15 vkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~Gl 94 (1189)
T KOG2041|consen 15 VKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGL 94 (1189)
T ss_pred ceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCce
Confidence 457899999999999999999999999886532211 1223344567788999999999999999999999
Q ss_pred EEEEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEEEECCCccccceEEeeeccCCCC
Q 048012 220 AKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPGR 299 (616)
Q Consensus 220 v~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~ 299 (616)
|.||-+-.+...+. +. -....+.|.+++|+.+| ..++....||.|.+=.+...+....-....
T Consensus 95 IiVWmlykgsW~EE---------Mi-NnRnKSvV~SmsWn~dG-~kIcIvYeDGavIVGsvdGNRIwgKeLkg~------ 157 (1189)
T KOG2041|consen 95 IIVWMLYKGSWCEE---------MI-NNRNKSVVVSMSWNLDG-TKICIVYEDGAVIVGSVDGNRIWGKELKGQ------ 157 (1189)
T ss_pred EEEEeeecccHHHH---------Hh-hCcCccEEEEEEEcCCC-cEEEEEEccCCEEEEeeccceecchhcchh------
Confidence 99998776553221 11 23456778999999988 478888888888776665432211111110
Q ss_pred ccEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCCCCCc----ee---eecCCCCCeEEEEEc--------CCCCeEEEEe
Q 048012 300 VAVTTCAWDCDGKCIAGGIGDGSIQVWNLKPGWGSRPD----IH---VEKGHSDDITALKFS--------SDGRILLSRS 364 (616)
Q Consensus 300 ~~v~~~~~sp~g~~l~~g~~dg~I~iwd~~~~~~~~~~----~~---~~~~h~~~V~~l~~s--------pdg~~l~s~s 364 (616)
....+.|++|.+.++.+-.+|.+++||....+..+-. +. .+......|-.+.|. ||...|+.+-
T Consensus 158 -~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy 236 (1189)
T KOG2041|consen 158 -LLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCY 236 (1189)
T ss_pred -eccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEE
Confidence 3457889999999999999999999998765311111 10 111122236666664 4778999999
Q ss_pred cCCcEEEEeCCCCCCcceEecCCCCCCcceeEEECCCCCEEEEeeccc-ccc-CCCceEEEEeCCCCceEEEEecCCCCC
Q 048012 365 FDGSLKVWDLRKMKEPLKVFEDLPNNYAQTNVAFSPDEQLFLTGTSVE-RES-TTGGLLCFYDREKLELVSRVGISPACS 442 (616)
Q Consensus 365 ~Dg~v~lwd~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~gs~~~-~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~ 442 (616)
.+|.+.|..-.+...|+.+-.+ ..+..+.|+++|..|++++... ... ...+.|.+|. .-|+.+.++++ ++..
T Consensus 237 ~nGr~QiMR~eND~~Pvv~dtg----m~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fys-p~G~i~gtlkv-pg~~ 310 (1189)
T KOG2041|consen 237 ANGRMQIMRSENDPEPVVVDTG----MKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYS-PYGHIVGTLKV-PGSC 310 (1189)
T ss_pred cCceehhhhhcCCCCCeEEecc----cEeecceecCCCcEEEEccCcccccCccccceEEEec-cchhheEEEec-CCce
Confidence 9999999876655555544322 4488899999999999998532 222 2334677776 46788888887 5677
Q ss_pred eEEEEEcCCCCcEEEEec
Q 048012 443 VVQCAWHPKLNQIFATAG 460 (616)
Q Consensus 443 v~~~~~~p~~~~l~~~~~ 460 (616)
|+.+.|--.+-.|+.+..
T Consensus 311 It~lsWEg~gLriA~Avd 328 (1189)
T KOG2041|consen 311 ITGLSWEGTGLRIAIAVD 328 (1189)
T ss_pred eeeeEEcCCceEEEEEec
Confidence 999999988877776653
No 253
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.30 E-value=1.3e-09 Score=115.24 Aligned_cols=217 Identities=15% Similarity=0.085 Sum_probs=134.9
Q ss_pred eEEEEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCC--CCEEEEECCCccccceEEeeeccC
Q 048012 219 QAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSED--GSLRIWDVNEFKSQKQVIKPKLAR 296 (616)
Q Consensus 219 ~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~D--g~v~iwd~~~~~~~~~~~~~~~~~ 296 (616)
.|.++|.++..... +..+...+....|+|++..++++...+ ..|.+||+.++.... +..
T Consensus 180 ~l~~~d~~g~~~~~-------------l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~----- 240 (430)
T PRK00178 180 TLQRSDYDGARAVT-------------LLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITN----- 240 (430)
T ss_pred EEEEECCCCCCceE-------------EecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccC-----
Confidence 57777877654322 234556788999999986444444333 358999998754321 111
Q ss_pred CCCccEEEEEECCCCCeEEE-EeCCC--cEEEEeCCCCCCCCCceeeecCCCCCeEEEEEcCCCCeEEEEec-CC--cEE
Q 048012 297 PGRVAVTTCAWDCDGKCIAG-GIGDG--SIQVWNLKPGWGSRPDIHVEKGHSDDITALKFSSDGRILLSRSF-DG--SLK 370 (616)
Q Consensus 297 ~~~~~v~~~~~sp~g~~l~~-g~~dg--~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~-Dg--~v~ 370 (616)
....+....|+|+|+.|+. ...+| .|++||+.++ ....+..+........|+|||+.|+..+. ++ .|+
T Consensus 241 -~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~-----~~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy 314 (430)
T PRK00178 241 -FEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASR-----QLSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIY 314 (430)
T ss_pred -CCCCcCCeEECCCCCEEEEEEccCCCceEEEEECCCC-----CeEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEE
Confidence 1113456899999998874 44455 5888899875 23334445555677899999998876664 33 577
Q ss_pred EEeCCCCCCcceEecCCCCCCcceeEEECCCCCEEEEeeccccccCCCceEEEEeCCCCceEEEEecCCCCCeEEEEEcC
Q 048012 371 VWDLRKMKEPLKVFEDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREKLELVSRVGISPACSVVQCAWHP 450 (616)
Q Consensus 371 lwd~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p 450 (616)
++|+.++.. . .+... ........|+|||++|+...... ....|.+||+.+++.. .+.. ........|+|
T Consensus 315 ~~d~~~g~~-~-~lt~~--~~~~~~~~~Spdg~~i~~~~~~~----~~~~l~~~dl~tg~~~-~lt~--~~~~~~p~~sp 383 (430)
T PRK00178 315 KVNVNGGRA-E-RVTFV--GNYNARPRLSADGKTLVMVHRQD----GNFHVAAQDLQRGSVR-ILTD--TSLDESPSVAP 383 (430)
T ss_pred EEECCCCCE-E-EeecC--CCCccceEECCCCCEEEEEEccC----CceEEEEEECCCCCEE-EccC--CCCCCCceECC
Confidence 778765432 2 22111 12234678999999998876210 1236889999888653 3322 12233568999
Q ss_pred CCCcEEEEeccCCCCceEEEeccc
Q 048012 451 KLNQIFATAGDKSQGGTHILYDPR 474 (616)
Q Consensus 451 ~~~~l~~~~~d~~~~~~~~v~~~~ 474 (616)
++..|+.++.+ ++...+|-+.
T Consensus 384 dg~~i~~~~~~---~g~~~l~~~~ 404 (430)
T PRK00178 384 NGTMLIYATRQ---QGRGVLMLVS 404 (430)
T ss_pred CCCEEEEEEec---CCceEEEEEE
Confidence 99999888764 3344444443
No 254
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.30 E-value=1.2e-10 Score=108.10 Aligned_cols=268 Identities=18% Similarity=0.325 Sum_probs=171.0
Q ss_pred CcccEEEEEECCCCCEEEEEEcCCcEEEEeCCCCccc-cccceecCCC-----------CCCceEEEEecCCCC--eEEE
Q 048012 148 HTKIVSALAVDHSGSRVLSGSYDYTVRMYDFQGMNSR-LQSFRQLEPS-----------EGHQVRNLSWSPTSD--RFLC 213 (616)
Q Consensus 148 H~~~V~~v~~sp~g~~lasgs~Dg~i~iwd~~~~~~~-~~~~~~~~~~-----------~~~~v~~l~~sp~g~--~l~~ 213 (616)
....|++|.|...|.+|++|...|.|.+|.-+....+ ...+..+... -...|..+.|..++. .++.
T Consensus 25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl 104 (460)
T COG5170 25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL 104 (460)
T ss_pred ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence 3567999999999999999999999999975542211 1111111110 012378888876643 5888
Q ss_pred EeCCCeEEEEECCCCee----------------------------eeEeeCceeEe--ecc-cCCCcccceEEEEEcCCC
Q 048012 214 VTGSAQAKIYDRDGLTL----------------------------GEFVKGDMYIR--DLK-NTKGHICGLTCGEWHPKT 262 (616)
Q Consensus 214 ~s~d~~v~vwd~~~~~~----------------------------~~~~~~~~~~~--~~~-~~~~h~~~v~~~~~~p~~ 262 (616)
.+.+.+|++|.+....+ .++...++++. +.+ ....|...|+++.|+.+.
T Consensus 105 stNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~ 184 (460)
T COG5170 105 STNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDK 184 (460)
T ss_pred ecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCch
Confidence 99999999998764421 11222233322 111 126788899999999875
Q ss_pred CCEEEEEeCCCCEEEEECCCccccceEEeeec--cCCCCccEEEEEECCC-CCeEEEEeCCCcEEEEeCCCCCC---CCC
Q 048012 263 KETILTSSEDGSLRIWDVNEFKSQKQVIKPKL--ARPGRVAVTTCAWDCD-GKCIAGGIGDGSIQVWNLKPGWG---SRP 336 (616)
Q Consensus 263 ~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~--~~~~~~~v~~~~~sp~-g~~l~~g~~dg~I~iwd~~~~~~---~~~ 336 (616)
..+++ +.|-.|.+|++.-....-.+..... ...-..-|++..|+|. .+.+.-.+..|.|++-|++...- ..+
T Consensus 185 -et~lS-aDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~k 262 (460)
T COG5170 185 -ETLLS-ADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKK 262 (460)
T ss_pred -heeee-ccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchh
Confidence 35554 4578899999875433333322111 1111124788889985 45666777899999999984310 000
Q ss_pred ce---------eeecCCCCCeEEEEEcCCCCeEEEEecCCcEEEEeCCCCCCcceEecCCC----------CCC---cce
Q 048012 337 DI---------HVEKGHSDDITALKFSSDGRILLSRSFDGSLKVWDLRKMKEPLKVFEDLP----------NNY---AQT 394 (616)
Q Consensus 337 ~~---------~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~----------~~~---~v~ 394 (616)
.. ..+..-.+.|..+.|+++|+++++... -+|+|||++..+.|+.++.-|. ... .-.
T Consensus 263 lfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifdkF 341 (460)
T COG5170 263 LFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFDKF 341 (460)
T ss_pred hhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCceeechHHHHHHHHHhhhhccceeeeE
Confidence 10 111122356889999999999999875 5799999999888888774332 111 124
Q ss_pred eEEECCCCCEEEEeeccccccCCCceEEEEe
Q 048012 395 NVAFSPDEQLFLTGTSVERESTTGGLLCFYD 425 (616)
Q Consensus 395 ~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd 425 (616)
.+.||-|.+.+++|+ ..+..-||-
T Consensus 342 eisfSgd~~~v~sgs-------y~NNfgiyp 365 (460)
T COG5170 342 EISFSGDDKHVLSGS-------YSNNFGIYP 365 (460)
T ss_pred EEEecCCcccccccc-------cccceeeec
Confidence 578999999999998 555555554
No 255
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.28 E-value=4.4e-09 Score=104.22 Aligned_cols=301 Identities=16% Similarity=0.164 Sum_probs=192.5
Q ss_pred ccEEEEEECCCCCEEEEEEcCC---------------cEEEEeCCCCccccccceecCCCCCCceE-EEEecCCCCeEEE
Q 048012 150 KIVSALAVDHSGSRVLSGSYDY---------------TVRMYDFQGMNSRLQSFRQLEPSEGHQVR-NLSWSPTSDRFLC 213 (616)
Q Consensus 150 ~~V~~v~~sp~g~~lasgs~Dg---------------~i~iwd~~~~~~~~~~~~~~~~~~~~~v~-~l~~sp~g~~l~~ 213 (616)
..|.-+.|+|.+.+|.|-+... .+.+||..++. .+..+.... .....+ -+.|+.+..+++-
T Consensus 72 ~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~-iv~sf~~~~--q~~~~Wp~~k~s~~D~y~AR 148 (561)
T COG5354 72 PDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGM-IVFSFNGIS--QPYLGWPVLKFSIDDKYVAR 148 (561)
T ss_pred CCceecccCcccceeeeeccCCccChhhccCCccccCceeEEeccCce-eEeeccccC--Ccccccceeeeeecchhhhh
Confidence 4588899999999999976643 49999998753 122221111 111133 6888888877665
Q ss_pred EeCCCeEEEEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCC-CEEEE-----EeCCCCEEEEECCCccccc
Q 048012 214 VTGSAQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTK-ETILT-----SSEDGSLRIWDVNEFKSQK 287 (616)
Q Consensus 214 ~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~-~~l~s-----~s~Dg~v~iwd~~~~~~~~ 287 (616)
. ....++|+++ +..+.. .+.+.++ ...|....|+|.+. ..|+. .+.+++++||.+.....+.
T Consensus 149 v-v~~sl~i~e~-t~n~~~--------~p~~~lr--~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~ 216 (561)
T COG5354 149 V-VGSSLYIHEI-TDNIEE--------HPFKNLR--PVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLV 216 (561)
T ss_pred h-ccCeEEEEec-CCcccc--------Cchhhcc--ccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeee
Confidence 5 4567889987 333211 1222222 45678888888632 23332 4568899999997544433
Q ss_pred eEEeeeccCCCCccEEEEEECCCCCeEEEEe-----------CCCcEEEEeCCCCCCCCCceeeecCCCCCeEEEEEcCC
Q 048012 288 QVIKPKLARPGRVAVTTCAWDCDGKCIAGGI-----------GDGSIQVWNLKPGWGSRPDIHVEKGHSDDITALKFSSD 356 (616)
Q Consensus 288 ~~~~~~~~~~~~~~v~~~~~sp~g~~l~~g~-----------~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~spd 356 (616)
....... .-..+.|++.|++|++-. ....++|++++.. .+.....-.++|...+|.|.
T Consensus 217 tk~lfk~------~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~-----~i~V~~~~~~pVhdf~W~p~ 285 (561)
T COG5354 217 TKNLFKV------SGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITER-----SIPVEKDLKDPVHDFTWEPL 285 (561)
T ss_pred eeeeEee------cccEEEEecCCceEEEEEEEeeecccceeccceEEEEeeccc-----ccceeccccccceeeeeccc
Confidence 3222221 124577899998766432 1356889988742 33333356789999999998
Q ss_pred CCeEEEEe--cCCcEEEEeCCCCCCcceEecCCCCCCcceeEEECCCCCEEEEeeccccccCCCceEEEEeCCCCce-EE
Q 048012 357 GRILLSRS--FDGSLKVWDLRKMKEPLKVFEDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREKLEL-VS 433 (616)
Q Consensus 357 g~~l~s~s--~Dg~v~lwd~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~~~~-~~ 433 (616)
++.+++.+ .+..+.++|++.. ....+.. ..-..+.|+|.++++++++. +...|.|.|||....-. +.
T Consensus 286 S~~F~vi~g~~pa~~s~~~lr~N--l~~~~Pe----~~rNT~~fsp~~r~il~agF----~nl~gni~i~~~~~rf~~~~ 355 (561)
T COG5354 286 SSRFAVISGYMPASVSVFDLRGN--LRFYFPE----QKRNTIFFSPHERYILFAGF----DNLQGNIEIFDPAGRFKVAG 355 (561)
T ss_pred CCceeEEecccccceeecccccc--eEEecCC----cccccccccCcccEEEEecC----CccccceEEeccCCceEEEE
Confidence 88777655 7889999999853 2222211 12345889999999999873 22568899999765544 33
Q ss_pred EEecCCCCCeEEEEEcCCCCcEEEEeccC--CCCceEEEeccc-----------CCCCCcEEEEecCCc
Q 048012 434 RVGISPACSVVQCAWHPKLNQIFATAGDK--SQGGTHILYDPR-----------LSERGALVCVARAPR 489 (616)
Q Consensus 434 ~~~~~~~~~v~~~~~~p~~~~l~~~~~d~--~~~~~~~v~~~~-----------~s~~g~~l~s~~~d~ 489 (616)
.+.. ....-|.|+|++.++.+..... ..+..+.||++. |-|.|++..+.+...
T Consensus 356 ~~~~---~n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~~~fel~~~~W~p~~~~~ttsSs~~ 421 (561)
T COG5354 356 AFNG---LNTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGAKVFELTNITWDPSGQYVTTSSSCP 421 (561)
T ss_pred Eeec---CCceEeeccCCceEEEecCCCcccccCcceEEEEecCchhhhhhhccccCCcccceeeccCC
Confidence 5543 3357789999999888776532 357778888854 355566665555543
No 256
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.28 E-value=1.2e-09 Score=108.20 Aligned_cols=305 Identities=13% Similarity=0.071 Sum_probs=191.1
Q ss_pred CcccEEEEEECCCCCEEEEEEcCCcEEEEeCCCCccccccceecCCCCCCceEEEEecCCCCeEEEEeCCC---------
Q 048012 148 HTKIVSALAVDHSGSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSDRFLCVTGSA--------- 218 (616)
Q Consensus 148 H~~~V~~v~~sp~g~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~s~d~--------- 218 (616)
-.-++..++|||.|.+|++.... .|.+|.-.... .+.. .....|..+.|||.+.+|.+-+...
T Consensus 31 ~~~p~~~~~~SP~G~~l~~~~~~-~V~~~~g~~~~-~l~~------~~~~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~s 102 (561)
T COG5354 31 ENWPVAYVSESPLGTYLFSEHAA-GVECWGGPSKA-KLVR------FRHPDVKYLDFSPNEKYLVTWSREPIIEPEIEIS 102 (561)
T ss_pred cCcchhheeecCcchheehhhcc-ceEEccccchh-heee------eecCCceecccCcccceeeeeccCCccChhhccC
Confidence 35578889999999999986554 48999866543 1111 1233499999999999999865433
Q ss_pred ------eEEEEECCCCeeeeEeeCceeEeecccCCCcccc--eE-EEEEcCCCCCEEEEEeCCCCEEEEECCCccccceE
Q 048012 219 ------QAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICG--LT-CGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQV 289 (616)
Q Consensus 219 ------~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~--v~-~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~~~ 289 (616)
.+.|||..++.+... +.+.... .+ -+.|+-++. +++-. -...+.|+++ +.... ..
T Consensus 103 p~~~~n~~~vwd~~sg~iv~s------------f~~~~q~~~~Wp~~k~s~~D~-y~ARv-v~~sl~i~e~-t~n~~-~~ 166 (561)
T COG5354 103 PFTSKNNVFVWDIASGMIVFS------------FNGISQPYLGWPVLKFSIDDK-YVARV-VGSSLYIHEI-TDNIE-EH 166 (561)
T ss_pred CccccCceeEEeccCceeEee------------ccccCCcccccceeeeeecch-hhhhh-ccCeEEEEec-CCccc-cC
Confidence 589999988765322 2222222 33 667877663 43333 2356899997 32211 11
Q ss_pred EeeeccCCCCccEEEEEECCCCC--eEEE-----EeCCCcEEEEeCCCCCCCCCceeeecCCCCCeEEEEEcCCCCeEEE
Q 048012 290 IKPKLARPGRVAVTTCAWDCDGK--CIAG-----GIGDGSIQVWNLKPGWGSRPDIHVEKGHSDDITALKFSSDGRILLS 362 (616)
Q Consensus 290 ~~~~~~~~~~~~v~~~~~sp~g~--~l~~-----g~~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s 362 (616)
.. .. -....|....|+|.|+ .||. +...++++||.+..+ ..+....-..-.=..+.|.+.|++|+.
T Consensus 167 p~-~~--lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~----s~l~tk~lfk~~~~qLkW~~~g~~ll~ 239 (561)
T COG5354 167 PF-KN--LRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKN----SVLVTKNLFKVSGVQLKWQVLGKYLLV 239 (561)
T ss_pred ch-hh--ccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCC----CeeeeeeeEeecccEEEEecCCceEEE
Confidence 00 00 0113688889999654 3333 456788999998754 233222222223357889999987764
Q ss_pred Ee-----------cCCcEEEEeCCCCCCcceEecCCCCCCcceeEEECCCCCEEEEeeccccccCCCceEEEEeCCCCce
Q 048012 363 RS-----------FDGSLKVWDLRKMKEPLKVFEDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREKLEL 431 (616)
Q Consensus 363 ~s-----------~Dg~v~lwd~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~~~~ 431 (616)
-- ....++|++++....++.. ....+|..++|.|.++.+++.+ +...-.+.++|++.. +
T Consensus 240 l~~t~~ksnKsyfgesnLyl~~~~e~~i~V~~----~~~~pVhdf~W~p~S~~F~vi~-----g~~pa~~s~~~lr~N-l 309 (561)
T COG5354 240 LVMTHTKSNKSYFGESNLYLLRITERSIPVEK----DLKDPVHDFTWEPLSSRFAVIS-----GYMPASVSVFDLRGN-L 309 (561)
T ss_pred EEEEeeecccceeccceEEEEeecccccceec----cccccceeeeecccCCceeEEe-----cccccceeecccccc-e
Confidence 32 1346889998854333322 2345699999999998888776 226677888888765 3
Q ss_pred EEEEecCCCCCeEEEEEcCCCCcEEEEeccCCCCceEEEec------------------ccCCCCCcEEEEec------C
Q 048012 432 VSRVGISPACSVVQCAWHPKLNQIFATAGDKSQGGTHILYD------------------PRLSERGALVCVAR------A 487 (616)
Q Consensus 432 ~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~~~~~~~v~~------------------~~~s~~g~~l~s~~------~ 487 (616)
...+ +...=+.+.|+|..++++.++-+.+.| .+.+|+ ..|||+|+++.+.- .
T Consensus 310 ~~~~---Pe~~rNT~~fsp~~r~il~agF~nl~g-ni~i~~~~~rf~~~~~~~~~n~s~~~wspd~qF~~~~~ts~k~~~ 385 (561)
T COG5354 310 RFYF---PEQKRNTIFFSPHERYILFAGFDNLQG-NIEIFDPAGRFKVAGAFNGLNTSYCDWSPDGQFYDTDTTSEKLRV 385 (561)
T ss_pred EEec---CCcccccccccCcccEEEEecCCcccc-ceEEeccCCceEEEEEeecCCceEeeccCCceEEEecCCCccccc
Confidence 3333 334456777888888887766654322 344444 45889999887754 3
Q ss_pred Ccceeccccc
Q 048012 488 PRKKSVDDFE 497 (616)
Q Consensus 488 d~~~~~wd~~ 497 (616)
|..+.||++.
T Consensus 386 Dn~i~l~~v~ 395 (561)
T COG5354 386 DNSIKLWDVY 395 (561)
T ss_pred CcceEEEEec
Confidence 5678899983
No 257
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.28 E-value=3.1e-09 Score=106.04 Aligned_cols=298 Identities=15% Similarity=0.209 Sum_probs=189.0
Q ss_pred EEEEECCCCCEEEEEEcCCcEEEEeCCCCccccccceecCCCCCCceEEEEecCCCCeEEEEeC-----------CCeEE
Q 048012 153 SALAVDHSGSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSDRFLCVTG-----------SAQAK 221 (616)
Q Consensus 153 ~~v~~sp~g~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~s~-----------d~~v~ 221 (616)
+-+.|||-|.||+|--.-| |.+|-=.+ +..+.......|.-+.|||+.+||++-+. ...+.
T Consensus 214 tyv~wSP~GTYL~t~Hk~G-I~lWGG~~-------f~r~~RF~Hp~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~ 285 (698)
T KOG2314|consen 214 TYVRWSPKGTYLVTFHKQG-IALWGGES-------FDRIQRFYHPGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLI 285 (698)
T ss_pred eeEEecCCceEEEEEeccc-eeeecCcc-------HHHHHhccCCCceeeecCCccceEEEecCCccccCcccCCCceEE
Confidence 5688999999999987666 88995322 22222222334899999999999998663 25899
Q ss_pred EEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEEEECCCccccceEEeeeccCCCCcc
Q 048012 222 IYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPGRVA 301 (616)
Q Consensus 222 vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~ 301 (616)
|||+.++.+... ....++....-.-..|+.+++ +++.-.. .+|.||+......... .. -.-..
T Consensus 286 IWDI~tG~lkrs---------F~~~~~~~~~WP~frWS~DdK-y~Arm~~-~sisIyEtpsf~lld~----Ks--lki~g 348 (698)
T KOG2314|consen 286 IWDIATGLLKRS---------FPVIKSPYLKWPIFRWSHDDK-YFARMTG-NSISIYETPSFMLLDK----KS--LKISG 348 (698)
T ss_pred EEEccccchhcc---------eeccCCCccccceEEeccCCc-eeEEecc-ceEEEEecCceeeecc----cc--cCCcc
Confidence 999998765322 112222223334568999875 6666555 5699998765322111 10 11125
Q ss_pred EEEEEECCCCCeEEEEeC--C---CcEEEEeCCCCCCCCCceeeecCCCCCeEEEEEcCCCCeEEEEe----------cC
Q 048012 302 VTTCAWDCDGKCIAGGIG--D---GSIQVWNLKPGWGSRPDIHVEKGHSDDITALKFSSDGRILLSRS----------FD 366 (616)
Q Consensus 302 v~~~~~sp~g~~l~~g~~--d---g~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s----------~D 366 (616)
|....|+|.+++||-=.. + ..+.|-.+.+. ..+....-|.-.=..|.|-.+|.+|+.-- .=
T Consensus 349 Ir~FswsP~~~llAYwtpe~~~~parvtL~evPs~----~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f 424 (698)
T KOG2314|consen 349 IRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSK----REIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQF 424 (698)
T ss_pred ccCcccCCCcceEEEEcccccCCcceEEEEecCcc----ceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceE
Confidence 888999999888875332 1 23555555543 34444444443334567777888887532 11
Q ss_pred CcEEEEeCCCCCCcceEecCCCCCCcceeEEECCCCCEEEEeeccccccCCCceEEEEeCCC-C---ceEEEEecCCCCC
Q 048012 367 GSLKVWDLRKMKEPLKVFEDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREK-L---ELVSRVGISPACS 442 (616)
Q Consensus 367 g~v~lwd~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~-~---~~~~~~~~~~~~~ 442 (616)
..+.|+.++....++.... -...|...+|-|.|..+++-+.. ....++.+|-+++ . +++..+. ...
T Consensus 425 ~n~eIfrireKdIpve~ve---lke~vi~FaWEP~gdkF~vi~g~----~~k~tvsfY~~e~~~~~~~lVk~~d---k~~ 494 (698)
T KOG2314|consen 425 SNLEIFRIREKDIPVEVVE---LKESVIAFAWEPHGDKFAVISGN----TVKNTVSFYAVETNIKKPSLVKELD---KKF 494 (698)
T ss_pred eeEEEEEeeccCCCceeee---cchheeeeeeccCCCeEEEEEcc----ccccceeEEEeecCCCchhhhhhhc---ccc
Confidence 2367777776666665543 23448899999999988876621 1356788998772 2 3444442 245
Q ss_pred eEEEEEcCCCCcEEEEeccCCCCceEEEeccc-------------------CCCCCcEEEEecCCcc
Q 048012 443 VVQCAWHPKLNQIFATAGDKSQGGTHILYDPR-------------------LSERGALVCVARAPRK 490 (616)
Q Consensus 443 v~~~~~~p~~~~l~~~~~d~~~~~~~~v~~~~-------------------~s~~g~~l~s~~~d~~ 490 (616)
.+.+.|+|.|+.++++.--. ..+...+||.. |.|.|+++++++.-.+
T Consensus 495 ~N~vfwsPkG~fvvva~l~s-~~g~l~F~D~~~a~~k~~~~~eh~~at~veWDPtGRYvvT~ss~wr 560 (698)
T KOG2314|consen 495 ANTVFWSPKGRFVVVAALVS-RRGDLEFYDTDYADLKDTASPEHFAATEVEWDPTGRYVVTSSSSWR 560 (698)
T ss_pred cceEEEcCCCcEEEEEEecc-cccceEEEecchhhhhhccCccccccccceECCCCCEEEEeeehhh
Confidence 78899999999998876531 35556666644 5678999999886543
No 258
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.27 E-value=1e-10 Score=124.92 Aligned_cols=195 Identities=15% Similarity=0.126 Sum_probs=147.6
Q ss_pred EEECCCCCEEEEEEcCCcEEEEeCCCCccccccceecCCCCCCceEEEEecCCCCeEEEEeCCCeEEEEECCCCeeeeEe
Q 048012 155 LAVDHSGSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSDRFLCVTGSAQAKIYDRDGLTLGEFV 234 (616)
Q Consensus 155 v~~sp~g~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~s~d~~v~vwd~~~~~~~~~~ 234 (616)
..+.-...+++.+..+..+-+||...... +.....-....-....-+.++++.-++++++.-+.|.+|+......
T Consensus 93 ~~l~~e~k~i~l~~~~ns~~i~d~~~~~~-~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~---- 167 (967)
T KOG0974|consen 93 AKLFEENKKIALVTSRNSLLIRDSKNSSV-LSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNK---- 167 (967)
T ss_pred cchhhhcceEEEEEcCceEEEEecccCce-ehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccCC----
Confidence 45555667888888899999999875321 1111100000111233455677777899999999999999873332
Q ss_pred eCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEEEECCCccccceEEeeeccCCCCccEEEEEECCCCCeE
Q 048012 235 KGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWDCDGKCI 314 (616)
Q Consensus 235 ~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l 314 (616)
...+.||.+.|..+.|+-++ .+++++|.|.++|+|++.+.+... ...-+|...|..++|.|+ .|
T Consensus 168 --------p~~l~GHeG~iF~i~~s~dg-~~i~s~SdDRsiRlW~i~s~~~~~-----~~~fgHsaRvw~~~~~~n--~i 231 (967)
T KOG0974|consen 168 --------PIRLKGHEGSIFSIVTSLDG-RYIASVSDDRSIRLWPIDSREVLG-----CTGFGHSARVWACCFLPN--RI 231 (967)
T ss_pred --------cceecccCCceEEEEEccCC-cEEEEEecCcceeeeecccccccC-----cccccccceeEEEEeccc--ee
Confidence 11478999999999999987 699999999999999999866544 122467778999999998 99
Q ss_pred EEEeCCCcEEEEeCCCCCCCCCceeeecCCCC-CeEEEEEcCCCCeEEEEecCCcEEEEeCC
Q 048012 315 AGGIGDGSIQVWNLKPGWGSRPDIHVEKGHSD-DITALKFSSDGRILLSRSFDGSLKVWDLR 375 (616)
Q Consensus 315 ~~g~~dg~I~iwd~~~~~~~~~~~~~~~~h~~-~V~~l~~spdg~~l~s~s~Dg~v~lwd~~ 375 (616)
++++.|-+.++|+... ..+..+..|.. .|..++..++...++|++.|+.+++||+.
T Consensus 232 ~t~gedctcrvW~~~~-----~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~ 288 (967)
T KOG0974|consen 232 ITVGEDCTCRVWGVNG-----TQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLN 288 (967)
T ss_pred EEeccceEEEEEeccc-----ceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhh
Confidence 9999999999997764 34446777764 59999999999999999999999999985
No 259
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.26 E-value=4.5e-09 Score=109.93 Aligned_cols=215 Identities=15% Similarity=0.133 Sum_probs=127.6
Q ss_pred CeEEEEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCE--EEEEeCCC--CEEEEECCCccccceEEeee
Q 048012 218 AQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKET--ILTSSEDG--SLRIWDVNEFKSQKQVIKPK 293 (616)
Q Consensus 218 ~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~--l~s~s~Dg--~v~iwd~~~~~~~~~~~~~~ 293 (616)
..|.+.|.++.....+ ......+..-.|+|++..+ +++...++ .|.+.++..+... .+.. .
T Consensus 165 ~~l~~~d~dG~~~~~l-------------t~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~-~lt~-~ 229 (428)
T PRK01029 165 GELWSVDYDGQNLRPL-------------TQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGK-KILA-L 229 (428)
T ss_pred ceEEEEcCCCCCceEc-------------ccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCce-Eeec-C
Confidence 4677778777653222 2233345667999998653 33554444 4777788765432 2211 1
Q ss_pred ccCCCCccEEEEEECCCCCeEEEEeC-CC----cEEEEeCCCCCCCCCceeeecCCCCCeEEEEEcCCCCeEEEEe-cCC
Q 048012 294 LARPGRVAVTTCAWDCDGKCIAGGIG-DG----SIQVWNLKPGWGSRPDIHVEKGHSDDITALKFSSDGRILLSRS-FDG 367 (616)
Q Consensus 294 ~~~~~~~~v~~~~~sp~g~~l~~g~~-dg----~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s-~Dg 367 (616)
.+ .....+|+|||+.|+..+. +| .+.+|++..+. ..........+.......+|+|||+.|+..+ .+|
T Consensus 230 --~g---~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~-~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g 303 (428)
T PRK01029 230 --QG---NQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGA-IGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDG 303 (428)
T ss_pred --CC---CccceEECCCCCEEEEEECCCCCcceeEEEeecccCC-CCcceEeecCCCCCcCCeEECCCCCEEEEEECCCC
Confidence 11 3446789999998876553 23 34457766431 0122222222333456789999999888766 466
Q ss_pred cEEEE--eCCCCCCcceEecCCCCCCcceeEEECCCCCEEEEeeccccccCCCceEEEEeCCCCceEEEEecCCCCCeEE
Q 048012 368 SLKVW--DLRKMKEPLKVFEDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREKLELVSRVGISPACSVVQ 445 (616)
Q Consensus 368 ~v~lw--d~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~ 445 (616)
...|| ++.........+... ...+....|||||++|+..... .....|++||+.+++...... ....+..
T Consensus 304 ~~~ly~~~~~~~g~~~~~lt~~--~~~~~~p~wSPDG~~Laf~~~~----~g~~~I~v~dl~~g~~~~Lt~--~~~~~~~ 375 (428)
T PRK01029 304 RPRIYIMQIDPEGQSPRLLTKK--YRNSSCPAWSPDGKKIAFCSVI----KGVRQICVYDLATGRDYQLTT--SPENKES 375 (428)
T ss_pred CceEEEEECcccccceEEeccC--CCCccceeECCCCCEEEEEEcC----CCCcEEEEEECCCCCeEEccC--CCCCccc
Confidence 55555 443222222333222 2346788999999999887621 123579999999887643322 2345678
Q ss_pred EEEcCCCCcEEEEecc
Q 048012 446 CAWHPKLNQIFATAGD 461 (616)
Q Consensus 446 ~~~~p~~~~l~~~~~d 461 (616)
..|+|+++.|+....+
T Consensus 376 p~wSpDG~~L~f~~~~ 391 (428)
T PRK01029 376 PSWAIDSLHLVYSAGN 391 (428)
T ss_pred eEECCCCCEEEEEECC
Confidence 9999999988876653
No 260
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.26 E-value=1.5e-09 Score=100.21 Aligned_cols=223 Identities=17% Similarity=0.226 Sum_probs=147.2
Q ss_pred cCCcEEEEeCCCCccccccceecCCCCCCceEEEEecC---CCC-eEEEEeCCCeEEEEECCCCeeeeEeeCceeEeecc
Q 048012 169 YDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSP---TSD-RFLCVTGSAQAKIYDRDGLTLGEFVKGDMYIRDLK 244 (616)
Q Consensus 169 ~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp---~g~-~l~~~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~~ 244 (616)
.-|.+.+|++..+.... ...+.......+..+.|.. +|. .|+.+-..|+|.+|......-... ++.+.
T Consensus 44 R~Gkl~Lys~~d~~~~~--l~~~q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~------L~~ls 115 (339)
T KOG0280|consen 44 RSGKLHLYSLEDMKLSP--LDTLQCTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVH------LRGLS 115 (339)
T ss_pred eccceEEEeecccccCc--cceeeeecccccceeeeeeccCCccceeeeccccceEEEEeeccceeeee------ecccc
Confidence 34678999988754221 2223333444577777764 444 466677789999998765442221 12222
Q ss_pred cCCCcccceEEEEEcCCCCCEEEEEeCCCCEEEEECCCccccceEEeeeccCCCCccEEEEEECC-CCCeEEEEeCCCcE
Q 048012 245 NTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWDC-DGKCIAGGIGDGSI 323 (616)
Q Consensus 245 ~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~g~~l~~g~~dg~I 323 (616)
..+-......++.|++.+ ..++++-.+|.+.+-+..... +........|...+..+.|+. +.+++++|+.||.+
T Consensus 116 ~~ki~~~~~lslD~~~~~-~~i~vs~s~G~~~~v~~t~~~----le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l 190 (339)
T KOG0280|consen 116 SKKISVVEALSLDISTSG-TKIFVSDSRGSISGVYETEMV----LEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSL 190 (339)
T ss_pred hhhhhheeeeEEEeeccC-ceEEEEcCCCcEEEEecceee----eeecccccccceeeeeeecccCCCceEEecCCCceE
Confidence 222222345678898866 468888888988865543321 111112245666788888875 45799999999999
Q ss_pred EEEeCCCCCCCCCceeeecCCCCCeEEEEEcC-CCCeEEEEecCCcEEEEeCCCCCCcceEecCCCCCCcceeEEECCCC
Q 048012 324 QVWNLKPGWGSRPDIHVEKGHSDDITALKFSS-DGRILLSRSFDGSLKVWDLRKMKEPLKVFEDLPNNYAQTNVAFSPDE 402 (616)
Q Consensus 324 ~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp-dg~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~v~~v~fspdg 402 (616)
..||+|.. ........+-|...|.+|.-+| .+.+|++|++|..|++||.|+.++++..-. ..+.|..+.++|.-
T Consensus 191 ~~~D~R~p--~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~---v~GGVWRi~~~p~~ 265 (339)
T KOG0280|consen 191 SCWDIRIP--KTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAK---VGGGVWRIKHHPEI 265 (339)
T ss_pred EEEEecCC--cceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCc---cccceEEEEecchh
Confidence 99999953 2223334567888999999887 678999999999999999998877765432 33569999999964
Q ss_pred --CEEEEee
Q 048012 403 --QLFLTGT 409 (616)
Q Consensus 403 --~~l~~gs 409 (616)
++|+++.
T Consensus 266 ~~~lL~~CM 274 (339)
T KOG0280|consen 266 FHRLLAACM 274 (339)
T ss_pred hhHHHHHHH
Confidence 3455544
No 261
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.25 E-value=2.2e-09 Score=113.15 Aligned_cols=207 Identities=16% Similarity=0.088 Sum_probs=127.7
Q ss_pred eEEEEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCC--CEEEEECCCccccceEEeeeccC
Q 048012 219 QAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDG--SLRIWDVNEFKSQKQVIKPKLAR 296 (616)
Q Consensus 219 ~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg--~v~iwd~~~~~~~~~~~~~~~~~ 296 (616)
.+.++|.++..... +..+...+.+..|+|++..++++...++ .|.+||+.+++.. .+. .. .
T Consensus 199 ~l~i~d~dG~~~~~-------------l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~-~lt-~~--~ 261 (448)
T PRK04792 199 QLMIADYDGYNEQM-------------LLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVRE-KVT-SF--P 261 (448)
T ss_pred EEEEEeCCCCCceE-------------eecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeE-Eec-CC--C
Confidence 66777777654221 2334557788999999865544444444 5888898765431 111 11 1
Q ss_pred CCCccEEEEEECCCCCeEEE-EeCCCc--EEEEeCCCCCCCCCceeeecCCCCCeEEEEEcCCCCeEEEEec-CC--cEE
Q 048012 297 PGRVAVTTCAWDCDGKCIAG-GIGDGS--IQVWNLKPGWGSRPDIHVEKGHSDDITALKFSSDGRILLSRSF-DG--SLK 370 (616)
Q Consensus 297 ~~~~~v~~~~~sp~g~~l~~-g~~dg~--I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~-Dg--~v~ 370 (616)
......+|+|+|+.|+. ...+|. |++||+.++ ....+..+...+...+|+|||+.|+..+. ++ .|.
T Consensus 262 ---g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg-----~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy 333 (448)
T PRK04792 262 ---GINGAPRFSPDGKKLALVLSKDGQPEIYVVDIATK-----ALTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIY 333 (448)
T ss_pred ---CCcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCC-----CeEECccCCCCccceEECCCCCEEEEEECCCCCceEE
Confidence 12346789999997765 556665 777788765 23344445556778999999998877654 34 466
Q ss_pred EEeCCCCCCcceEecCCCCCCcceeEEECCCCCEEEEeeccccccCCCceEEEEeCCCCceEEEEecCCCCCeEEEEEcC
Q 048012 371 VWDLRKMKEPLKVFEDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREKLELVSRVGISPACSVVQCAWHP 450 (616)
Q Consensus 371 lwd~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p 450 (616)
++|+.++. ...+.. ........+|+|||++|+..+.. .....|.++|+.+++.. .+.. ........|+|
T Consensus 334 ~~dl~~g~--~~~Lt~--~g~~~~~~~~SpDG~~l~~~~~~----~g~~~I~~~dl~~g~~~-~lt~--~~~d~~ps~sp 402 (448)
T PRK04792 334 RVNLASGK--VSRLTF--EGEQNLGGSITPDGRSMIMVNRT----NGKFNIARQDLETGAMQ-VLTS--TRLDESPSVAP 402 (448)
T ss_pred EEECCCCC--EEEEec--CCCCCcCeeECCCCCEEEEEEec----CCceEEEEEECCCCCeE-EccC--CCCCCCceECC
Confidence 66776543 222221 11223457999999999887620 01235777888887653 2321 11223458999
Q ss_pred CCCcEEEEecc
Q 048012 451 KLNQIFATAGD 461 (616)
Q Consensus 451 ~~~~l~~~~~d 461 (616)
+++.|+.+..+
T Consensus 403 dG~~I~~~~~~ 413 (448)
T PRK04792 403 NGTMVIYSTTY 413 (448)
T ss_pred CCCEEEEEEec
Confidence 99998887764
No 262
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.25 E-value=2e-09 Score=98.11 Aligned_cols=206 Identities=14% Similarity=0.010 Sum_probs=141.9
Q ss_pred CCCeEEEEeCCCeEEEEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEEEECCCcccc
Q 048012 207 TSDRFLCVTGSAQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQ 286 (616)
Q Consensus 207 ~g~~l~~~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~ 286 (616)
...+|+.++..|+..+|...+.+.. +.....|...|+-+.=..+...-+..++.|.++++.++.-....
T Consensus 83 kc~~la~gG~~g~fd~~~~~tn~~h-----------~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~ 151 (344)
T KOG4532|consen 83 KCVTLADGGASGQFDLFACNTNDGH-----------LYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNK 151 (344)
T ss_pred cccEEEeccccceeeeecccCcccc-----------eeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCccc
Confidence 4567888889999999998865431 11122333333322222223345777889999999998654332
Q ss_pred ceEEeeeccCCCCccEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCCCCCcee-eecCCCCCeEEEEEcCCCCeEEEEec
Q 048012 287 KQVIKPKLARPGRVAVTTCAWDCDGKCIAGGIGDGSIQVWNLKPGWGSRPDIH-VEKGHSDDITALKFSSDGRILLSRSF 365 (616)
Q Consensus 287 ~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~g~~dg~I~iwd~~~~~~~~~~~~-~~~~h~~~V~~l~~spdg~~l~s~s~ 365 (616)
..+... ...+.+++++++++++++.+....|.+|.+.... ..... ........-.+..|+.....+|++..
T Consensus 152 ~~~h~~------~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~s--ey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Q 223 (344)
T KOG4532|consen 152 FAVHNQ------NLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDES--EYIENIYEAPTSDHGFYNSFSENDLQFAVVFQ 223 (344)
T ss_pred ceeecc------ccceeeeEEcCCCceEEEecCCCcceEEEeCCcc--ceeeeeEecccCCCceeeeeccCcceEEEEec
Confidence 222111 1247899999999999999999999999987642 22222 22333444578899999999999999
Q ss_pred CCcEEEEeCCCCCCcceEecC--CCCCCcceeEEECCCCC--EEEEeeccccccCCCceEEEEeCCCCceEEEEecC
Q 048012 366 DGSLKVWDLRKMKEPLKVFED--LPNNYAQTNVAFSPDEQ--LFLTGTSVERESTTGGLLCFYDREKLELVSRVGIS 438 (616)
Q Consensus 366 Dg~v~lwd~~~~~~~~~~~~~--~~~~~~v~~v~fspdg~--~l~~gs~~~~~~~~dg~i~iwd~~~~~~~~~~~~~ 438 (616)
||++.|||+|....+...... ..+.+.++.+.|++.|. +|+..- .-+.+.+.|++++...+.+...
T Consensus 224 dg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sE-------hfs~~hv~D~R~~~~~q~I~i~ 293 (344)
T KOG4532|consen 224 DGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISE-------HFSRVHVVDTRNYVNHQVIVIP 293 (344)
T ss_pred CCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEec-------CcceEEEEEcccCceeeEEecC
Confidence 999999999987766554432 23677899999998664 344333 4678999999999888777654
No 263
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.23 E-value=1.5e-09 Score=109.54 Aligned_cols=194 Identities=17% Similarity=0.193 Sum_probs=143.0
Q ss_pred CCCCCEEEEEEcCCcEEEEeCCCCccccccceecCCCCCCceEEEEe------cC--------------CCCeEEEEeCC
Q 048012 158 DHSGSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSW------SP--------------TSDRFLCVTGS 217 (616)
Q Consensus 158 sp~g~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~------sp--------------~g~~l~~~s~d 217 (616)
.|.+.++|....||.+|||+..... ..+.|.......+ ...++.| +| +-..++.|...
T Consensus 2 ~~~~~~~A~~~~~g~l~iw~t~~~~-~~~e~~p~~~~s~-t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~ 79 (541)
T KOG4547|consen 2 PPALDYFALSTGDGRLRIWDTAKNQ-LQQEFAPIASLSG-TCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQ 79 (541)
T ss_pred CchhheEeecCCCCeEEEEEccCce-eeeeeccchhccC-cceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCC
Confidence 3556799999999999999987642 2223332222222 2333333 22 33467778899
Q ss_pred CeEEEEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEEEECCCccccceEEeeeccCC
Q 048012 218 AQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARP 297 (616)
Q Consensus 218 ~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~ 297 (616)
|.|.+|++.++++..+.. ...|.+.|+++.|+.+- ..|.+++.|+.+..|+....+...... .
T Consensus 80 g~v~~ys~~~g~it~~~s----------t~~h~~~v~~~~~~~~~-~ciyS~~ad~~v~~~~~~~~~~~~~~~------~ 142 (541)
T KOG4547|consen 80 GSVLLYSVAGGEITAKLS----------TDKHYGNVNEILDAQRL-GCIYSVGADLKVVYILEKEKVIIRIWK------E 142 (541)
T ss_pred ccEEEEEecCCeEEEEEe----------cCCCCCcceeeeccccc-CceEecCCceeEEEEecccceeeeeec------c
Confidence 999999999888755432 36899999999999876 489999999999999998754433322 2
Q ss_pred CCccEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCCCCCceeeecCCCCCeEEEEEcCC-----CCeEEEE-ecCCcEEE
Q 048012 298 GRVAVTTCAWDCDGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHSDDITALKFSSD-----GRILLSR-SFDGSLKV 371 (616)
Q Consensus 298 ~~~~v~~~~~sp~g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~spd-----g~~l~s~-s~Dg~v~l 371 (616)
....+.+++++|||..+++++ +.|.+||+.+. ..+..+.+|.++|+++.|--+ |.++++. ..+.-+.+
T Consensus 143 ~~~~~~sl~is~D~~~l~~as--~~ik~~~~~~k----evv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~ 216 (541)
T KOG4547|consen 143 QKPLVSSLCISPDGKILLTAS--RQIKVLDIETK----EVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITV 216 (541)
T ss_pred CCCccceEEEcCCCCEEEecc--ceEEEEEccCc----eEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeE
Confidence 233688999999999999986 78999999976 799999999999999999876 6666654 45666778
Q ss_pred EeCCC
Q 048012 372 WDLRK 376 (616)
Q Consensus 372 wd~~~ 376 (616)
|-+..
T Consensus 217 w~v~~ 221 (541)
T KOG4547|consen 217 WVVEK 221 (541)
T ss_pred EEEEc
Confidence 86654
No 264
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.23 E-value=4.6e-09 Score=104.87 Aligned_cols=278 Identities=15% Similarity=0.237 Sum_probs=172.6
Q ss_pred cEEEEEECCCCCEEEEEEcC-----------CcEEEEeCCCCccccccceecCCCCCCceEEEEecCCCCeEEEEeCCCe
Q 048012 151 IVSALAVDHSGSRVLSGSYD-----------YTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSDRFLCVTGSAQ 219 (616)
Q Consensus 151 ~V~~v~~sp~g~~lasgs~D-----------g~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~s~d~~ 219 (616)
.|.-+.|||..+||+|-|.. ..++|||+.++. ..+.|..+. .....-.-+.||.|+++++.... ..
T Consensus 251 ~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~-lkrsF~~~~-~~~~~WP~frWS~DdKy~Arm~~-~s 327 (698)
T KOG2314|consen 251 GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGL-LKRSFPVIK-SPYLKWPIFRWSHDDKYFARMTG-NS 327 (698)
T ss_pred CceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccc-hhcceeccC-CCccccceEEeccCCceeEEecc-ce
Confidence 47789999999999997641 569999999863 333343321 11112345789999999987776 57
Q ss_pred EEEEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeC-----CCCEEEEECCCccccceEEeeec
Q 048012 220 AKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSE-----DGSLRIWDVNEFKSQKQVIKPKL 294 (616)
Q Consensus 220 v~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~-----Dg~v~iwd~~~~~~~~~~~~~~~ 294 (616)
|.||+.....+. +.+ .-...+|....|+|.+ ++|+-=.. -..+.|-.+.+++.+......
T Consensus 328 isIyEtpsf~ll----------d~K--slki~gIr~FswsP~~-~llAYwtpe~~~~parvtL~evPs~~~iRt~nlf-- 392 (698)
T KOG2314|consen 328 ISIYETPSFMLL----------DKK--SLKISGIRDFSWSPTS-NLLAYWTPETNNIPARVTLMEVPSKREIRTKNLF-- 392 (698)
T ss_pred EEEEecCceeee----------ccc--ccCCccccCcccCCCc-ceEEEEcccccCCcceEEEEecCccceeeeccce--
Confidence 888887654331 111 2235678889999965 45553221 123445555443332222111
Q ss_pred cCCCCccEEEEEECCCCCeEEEEe----------CCCcEEEEeCCCCCCCCCceeeecCCCCCeEEEEEcCCCCeEEEEe
Q 048012 295 ARPGRVAVTTCAWDCDGKCIAGGI----------GDGSIQVWNLKPGWGSRPDIHVEKGHSDDITALKFSSDGRILLSRS 364 (616)
Q Consensus 295 ~~~~~~~v~~~~~sp~g~~l~~g~----------~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s 364 (616)
...=..+.|-.+|.+|+.-- .=..+.|+.++... ..+... .-...|...+|-|.|+.+++-+
T Consensus 393 ----nVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKd---Ipve~v-elke~vi~FaWEP~gdkF~vi~ 464 (698)
T KOG2314|consen 393 ----NVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKD---IPVEVV-ELKESVIAFAWEPHGDKFAVIS 464 (698)
T ss_pred ----eeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccC---CCceee-ecchheeeeeeccCCCeEEEEE
Confidence 11123456777888876532 12246677776531 222222 2346789999999999888766
Q ss_pred cC---CcEEEEeCCCCCCcceEecCCCCCCcceeEEECCCCCEEEEeeccccccCCCceEEEEeCCCCceEEEEecCCCC
Q 048012 365 FD---GSLKVWDLRKMKEPLKVFEDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREKLELVSRVGISPAC 441 (616)
Q Consensus 365 ~D---g~v~lwd~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 441 (616)
.. .++.+|-+.+.......+..+.. ...+.+.|+|.|++++.+.-. +..|.+.++|+....+..+- ...+.
T Consensus 465 g~~~k~tvsfY~~e~~~~~~~lVk~~dk-~~~N~vfwsPkG~fvvva~l~----s~~g~l~F~D~~~a~~k~~~-~~eh~ 538 (698)
T KOG2314|consen 465 GNTVKNTVSFYAVETNIKKPSLVKELDK-KFANTVFWSPKGRFVVVAALV----SRRGDLEFYDTDYADLKDTA-SPEHF 538 (698)
T ss_pred ccccccceeEEEeecCCCchhhhhhhcc-cccceEEEcCCCcEEEEEEec----ccccceEEEecchhhhhhcc-Ccccc
Confidence 43 57999988742222222222222 336789999999999998731 25789999998854433322 22345
Q ss_pred CeEEEEEcCCCCcEEEEec
Q 048012 442 SVVQCAWHPKLNQIFATAG 460 (616)
Q Consensus 442 ~v~~~~~~p~~~~l~~~~~ 460 (616)
..+.+.|.|.|++++++++
T Consensus 539 ~at~veWDPtGRYvvT~ss 557 (698)
T KOG2314|consen 539 AATEVEWDPTGRYVVTSSS 557 (698)
T ss_pred ccccceECCCCCEEEEeee
Confidence 6788999999999998876
No 265
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.22 E-value=8.1e-11 Score=131.27 Aligned_cols=197 Identities=16% Similarity=0.257 Sum_probs=152.8
Q ss_pred EEecCCcccEEEEEECCCCCEEEEEEcCCcEEEEeCCCCccccccceecCCCCCCceEEEEecCCCCeEEEEeCCCeEEE
Q 048012 143 IVLKGHTKIVSALAVDHSGSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSDRFLCVTGSAQAKI 222 (616)
Q Consensus 143 ~~l~~H~~~V~~v~~sp~g~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~s~d~~v~v 222 (616)
+.++.|-..|.++.-+|...+.+||+.||.|++|....+. .+..........|+.+.|+..|+.+.++.+||.+.+
T Consensus 2202 ~~~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~----~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l 2277 (2439)
T KOG1064|consen 2202 VMIKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQ----QVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSL 2277 (2439)
T ss_pred eEeecccCceeeecCCCCCceEEecCCCceEEEEeccCCC----eEEEeeccCcchhhhhhhcccCCceeeeccCCceee
Confidence 4566788889999999999999999999999999987543 222333334477999999999999999999999999
Q ss_pred EECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEe---CCCCEEEEECCCccccceEEeeeccCCCC
Q 048012 223 YDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSS---EDGSLRIWDVNEFKSQKQVIKPKLARPGR 299 (616)
Q Consensus 223 wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s---~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~ 299 (616)
|...... ....+.|......+.|-. .++++++ .++.+.+||..-......+. ..|.
T Consensus 2278 ~q~~pk~-------------~~s~qchnk~~~Df~Fi~---s~~~tag~s~d~~n~~lwDtl~~~~~s~v~-----~~H~ 2336 (2439)
T KOG1064|consen 2278 WQASPKP-------------YTSWQCHNKALSDFRFIG---SLLATAGRSSDNRNVCLWDTLLPPMNSLVH-----TCHD 2336 (2439)
T ss_pred cccCCcc-------------eeccccCCccccceeeee---hhhhccccCCCCCcccchhcccCcccceee-----eecC
Confidence 9987332 333567888888888875 3666654 56889999976433222222 3455
Q ss_pred ccEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCCCCCceeeecCCCCCeEEEEEcCCCCeEEEEecCCcEEEEeCCCCC
Q 048012 300 VAVTTCAWDCDGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHSDDITALKFSSDGRILLSRSFDGSLKVWDLRKMK 378 (616)
Q Consensus 300 ~~v~~~~~sp~g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~v~lwd~~~~~ 378 (616)
..+++++|-|...+|++|+.+|.|++||++. ++..+.+.. +. ...+|++++..|.++||++....
T Consensus 2337 ~gaT~l~~~P~~qllisggr~G~v~l~D~rq----rql~h~~~~---------~~-~~~~f~~~ss~g~ikIw~~s~~~ 2401 (2439)
T KOG1064|consen 2337 GGATVLAYAPKHQLLISGGRKGEVCLFDIRQ----RQLRHTFQA---------LD-TREYFVTGSSEGNIKIWRLSEFG 2401 (2439)
T ss_pred CCceEEEEcCcceEEEecCCcCcEEEeehHH----HHHHHHhhh---------hh-hhheeeccCcccceEEEEccccc
Confidence 5899999999999999999999999999984 355555544 44 56799999999999999998753
No 266
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.21 E-value=1.8e-09 Score=99.73 Aligned_cols=254 Identities=14% Similarity=0.138 Sum_probs=157.7
Q ss_pred cccEEEEEECC---CCC-EEEEEEcCCcEEEEeCCCCcc--ccccceecCCCCCCceEEEEecCCCCeEEEEeCCCeEEE
Q 048012 149 TKIVSALAVDH---SGS-RVLSGSYDYTVRMYDFQGMNS--RLQSFRQLEPSEGHQVRNLSWSPTSDRFLCVTGSAQAKI 222 (616)
Q Consensus 149 ~~~V~~v~~sp---~g~-~lasgs~Dg~i~iwd~~~~~~--~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~s~d~~v~v 222 (616)
+..+..|.|.. +|. .++-+-.+|.|.+|....... .++.+..... ......++.|++.+..+++.-.+|.+.+
T Consensus 69 ts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki-~~~~~lslD~~~~~~~i~vs~s~G~~~~ 147 (339)
T KOG0280|consen 69 TSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKI-SVVEALSLDISTSGTKIFVSDSRGSISG 147 (339)
T ss_pred ccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhh-hheeeeEEEeeccCceEEEEcCCCcEEE
Confidence 44566666652 444 556667788899987653221 1111111100 0012567899999999998888898886
Q ss_pred EECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEEEECCCccccceEEeeeccCCCCccE
Q 048012 223 YDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPGRVAV 302 (616)
Q Consensus 223 wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v 302 (616)
-+.....+ ...+..+.|.-+++...|+-...+++++|+.|+.+..||++..+ .++. .....|...|
T Consensus 148 v~~t~~~l----------e~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~---~~i~-~n~kvH~~GV 213 (339)
T KOG0280|consen 148 VYETEMVL----------EKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPK---TFIW-HNSKVHTSGV 213 (339)
T ss_pred Eecceeee----------eecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCc---ceee-ecceeeecce
Confidence 55443332 34556889999999999998888999999999999999998332 2221 1123455578
Q ss_pred EEEEECC-CCCeEEEEeCCCcEEEEeCCCCCCCCCceeeecCCCCCeEEEEEcCC--CCeEEEEecCCcEEEEeCCCCCC
Q 048012 303 TTCAWDC-DGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHSDDITALKFSSD--GRILLSRSFDGSLKVWDLRKMKE 379 (616)
Q Consensus 303 ~~~~~sp-~g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~spd--g~~l~s~s~Dg~v~lwd~~~~~~ 379 (616)
.++.-+| .+.+|++|+.|-.|++||.|+- . +++.. ..-.+.|+.+.++|. +.+|+++-.. -.+|-+......
T Consensus 214 ~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm--~-kPl~~-~~v~GGVWRi~~~p~~~~~lL~~CMh~-G~ki~~~~~~~~ 288 (339)
T KOG0280|consen 214 VSIYSSPPKPTYIATGSYDECIRVLDTRNM--G-KPLFK-AKVGGGVWRIKHHPEIFHRLLAACMHN-GAKILDSSDKVL 288 (339)
T ss_pred EEEecCCCCCceEEEeccccceeeeehhcc--c-Ccccc-CccccceEEEEecchhhhHHHHHHHhc-CceEEEeccccc
Confidence 8887665 5789999999999999999964 1 22222 122378999999993 3345544444 477777765432
Q ss_pred cceE-ec-CCCCCCcceeEEECCCCCEEEEeeccccccCCCceEE-EEeCCC
Q 048012 380 PLKV-FE-DLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLC-FYDREK 428 (616)
Q Consensus 380 ~~~~-~~-~~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~-iwd~~~ 428 (616)
.... +. ...+.+-+..-.|.....+|++++. .|..|+ +|-.-+
T Consensus 289 e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsF------YDk~~~~~Wl~~t 334 (339)
T KOG0280|consen 289 EFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSF------YDKKIRQLWLHIT 334 (339)
T ss_pred chheeeeccccccceeeccccccccceeeeeec------cccceeeeeeecc
Confidence 2111 11 1112222333445444567888763 566544 665433
No 267
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.21 E-value=3.1e-08 Score=97.33 Aligned_cols=236 Identities=15% Similarity=0.146 Sum_probs=159.0
Q ss_pred EEecCCCCeEEEEeCCCeEEEEECCCCeeeeEeeCceeEeecccCCCcccceEEEE-EcCCCCCEEEEEeCCCCEEEEEC
Q 048012 202 LSWSPTSDRFLCVTGSAQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGE-WHPKTKETILTSSEDGSLRIWDV 280 (616)
Q Consensus 202 l~~sp~g~~l~~~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~-~~p~~~~~l~s~s~Dg~v~iwd~ 280 (616)
-..+.+|++++ -+..|.|.+||.++..+..+.-+-...+. ...........-+. |++-.+.+++..|. |...|.+.
T Consensus 272 R~~nsDGkrIv-Fq~~GdIylydP~td~lekldI~lpl~rk-~k~~k~~~pskyledfa~~~Gd~ia~VSR-GkaFi~~~ 348 (668)
T COG4946 272 RNANSDGKRIV-FQNAGDIYLYDPETDSLEKLDIGLPLDRK-KKQPKFVNPSKYLEDFAVVNGDYIALVSR-GKAFIMRP 348 (668)
T ss_pred cccCCCCcEEE-EecCCcEEEeCCCcCcceeeecCCccccc-cccccccCHHHhhhhhccCCCcEEEEEec-CcEEEECC
Confidence 34466888876 56678999999988877655433111100 00111111222222 44445578888875 66777665
Q ss_pred CCccccceEEeeeccCCCCccEEEEEECCCCCeEEEEeCCC-cEEEEeCCCCCCCCCceeeecCCCCCeEEEEEcCCCCe
Q 048012 281 NEFKSQKQVIKPKLARPGRVAVTTCAWDCDGKCIAGGIGDG-SIQVWNLKPGWGSRPDIHVEKGHSDDITALKFSSDGRI 359 (616)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~g~~dg-~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~ 359 (616)
..+-.+ . -+++..|.-..+.-+++-++.|..|| .|-|||.+++ .+..+...-+.|.++..+++|++
T Consensus 349 ~~~~~i---q-----v~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~-----e~kr~e~~lg~I~av~vs~dGK~ 415 (668)
T COG4946 349 WDGYSI---Q-----VGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGG-----EVKRIEKDLGNIEAVKVSPDGKK 415 (668)
T ss_pred CCCeeE---E-----cCCCCceEEEEEccCCcceEEeccCCceEEEEecCCc-----eEEEeeCCccceEEEEEcCCCcE
Confidence 443211 1 13333577777777888899999999 8999999986 55666667788999999999999
Q ss_pred EEEEecCCcEEEEeCCCCCCcceEecCCCCCCcceeEEECCCCCEEEEeeccccccCCCceEEEEeCCCCceEEEEecCC
Q 048012 360 LLSRSFDGSLKVWDLRKMKEPLKVFEDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREKLELVSRVGISP 439 (616)
Q Consensus 360 l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~ 439 (616)
++.+.....|.+.|+.++. ++.+. .....-|+.+.|+|+++++|.+-- .+.....|++||+.+++...... +
T Consensus 416 ~vvaNdr~el~vididngn--v~~id-kS~~~lItdf~~~~nsr~iAYafP---~gy~tq~Iklydm~~~Kiy~vTT--~ 487 (668)
T COG4946 416 VVVANDRFELWVIDIDNGN--VRLID-KSEYGLITDFDWHPNSRWIAYAFP---EGYYTQSIKLYDMDGGKIYDVTT--P 487 (668)
T ss_pred EEEEcCceEEEEEEecCCC--eeEec-ccccceeEEEEEcCCceeEEEecC---cceeeeeEEEEecCCCeEEEecC--C
Confidence 9999888889999999865 33332 234456999999999999999862 11134579999999888665432 3
Q ss_pred CCCeEEEEEcCCCCcEEEEecc
Q 048012 440 ACSVVQCAWHPKLNQIFATAGD 461 (616)
Q Consensus 440 ~~~v~~~~~~p~~~~l~~~~~d 461 (616)
.+.-.+-+|.|++++|+.-+..
T Consensus 488 ta~DfsPaFD~d~ryLYfLs~R 509 (668)
T COG4946 488 TAYDFSPAFDPDGRYLYFLSAR 509 (668)
T ss_pred cccccCcccCCCCcEEEEEecc
Confidence 3334567888998888776653
No 268
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.17 E-value=1.3e-07 Score=93.00 Aligned_cols=159 Identities=19% Similarity=0.200 Sum_probs=121.3
Q ss_pred CCCeEEEEeCCCcEEEEeCCCCCCCCCceeeecCCCCCeEEEEEcCCCCeEEEEecCC-cEEEEeCCCCCCcceEecCCC
Q 048012 310 DGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHSDDITALKFSSDGRILLSRSFDG-SLKVWDLRKMKEPLKVFEDLP 388 (616)
Q Consensus 310 ~g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg-~v~lwd~~~~~~~~~~~~~~~ 388 (616)
+|.+++..+ .|...|.+...+ .....+|.+.|.-..+.-+++-++.|..|| .|-|||.+.+. ++.+..
T Consensus 331 ~Gd~ia~VS-RGkaFi~~~~~~------~~iqv~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e--~kr~e~-- 399 (668)
T COG4946 331 NGDYIALVS-RGKAFIMRPWDG------YSIQVGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGE--VKRIEK-- 399 (668)
T ss_pred CCcEEEEEe-cCcEEEECCCCC------eeEEcCCCCceEEEEEccCCcceEEeccCCceEEEEecCCce--EEEeeC--
Confidence 678888776 577888776543 233456777798888888888999999999 89999998643 233332
Q ss_pred CCCcceeEEECCCCCEEEEeeccccccCCCceEEEEeCCCCceEEEEecCCCCCeEEEEEcCCCCcEEEEeccCCCCceE
Q 048012 389 NNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREKLELVSRVGISPACSVVQCAWHPKLNQIFATAGDKSQGGTH 468 (616)
Q Consensus 389 ~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~~~~~~ 468 (616)
.-+.|.++..+++|++++++. ....|.++|+.+++.. .+..+..+-|+.+.|||++.+|+.+--++..-..+
T Consensus 400 ~lg~I~av~vs~dGK~~vvaN-------dr~el~vididngnv~-~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~I 471 (668)
T COG4946 400 DLGNIEAVKVSPDGKKVVVAN-------DRFELWVIDIDNGNVR-LIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSI 471 (668)
T ss_pred CccceEEEEEcCCCcEEEEEc-------CceEEEEEEecCCCee-EecccccceeEEEEEcCCceeEEEecCcceeeeeE
Confidence 334489999999999999998 7889999999999854 34344567899999999999999988776444455
Q ss_pred EEec------------------ccCCCCCcEEEEecC
Q 048012 469 ILYD------------------PRLSERGALVCVARA 487 (616)
Q Consensus 469 ~v~~------------------~~~s~~g~~l~s~~~ 487 (616)
.+|+ ++|.|+|++|.--+.
T Consensus 472 klydm~~~Kiy~vTT~ta~DfsPaFD~d~ryLYfLs~ 508 (668)
T COG4946 472 KLYDMDGGKIYDVTTPTAYDFSPAFDPDGRYLYFLSA 508 (668)
T ss_pred EEEecCCCeEEEecCCcccccCcccCCCCcEEEEEec
Confidence 5554 678889998876553
No 269
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.17 E-value=2.4e-09 Score=109.71 Aligned_cols=247 Identities=16% Similarity=0.239 Sum_probs=174.3
Q ss_pred CCCceEEEEecCCCCeEEEEeCCCeEEEEECCCCeeeeEeeC---ceeEeecccCCCcccceEEEEEcCCCCCEEEEEeC
Q 048012 195 EGHQVRNLSWSPTSDRFLCVTGSAQAKIYDRDGLTLGEFVKG---DMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSE 271 (616)
Q Consensus 195 ~~~~v~~l~~sp~g~~l~~~s~d~~v~vwd~~~~~~~~~~~~---~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~ 271 (616)
......|+.|+....++++|+.||.++|..+.+.....-.++ ...+.--+++.||...|.-+.|+-.. +.|-|+..
T Consensus 13 nnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~-QKLTtSDt 91 (1189)
T KOG2041|consen 13 NNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENN-QKLTTSDT 91 (1189)
T ss_pred CCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEecccc-ccccccCC
Confidence 444689999999999999999999999998875442211111 11122244678999999999999865 57889999
Q ss_pred CCCEEEEECCCccccceEEeeeccCCCCccEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCCCCCceeeecCCCCCeEEE
Q 048012 272 DGSLRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWDCDGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHSDDITAL 351 (616)
Q Consensus 272 Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l 351 (616)
+|-|.+|-+-.+......+.. .....|.+++|+.+|..|+....||.|.+=.+..+. ..-..+++ .....+
T Consensus 92 ~GlIiVWmlykgsW~EEMiNn----RnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNR---IwgKeLkg--~~l~hv 162 (1189)
T KOG2041|consen 92 SGLIIVWMLYKGSWCEEMINN----RNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNR---IWGKELKG--QLLAHV 162 (1189)
T ss_pred CceEEEEeeecccHHHHHhhC----cCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccce---ecchhcch--heccce
Confidence 999999999877655444332 223368999999999999999999999887776531 11111221 224578
Q ss_pred EEcCCCCeEEEEecCCcEEEEeCCCCC------Cc-ce---EecCCCCCCcceeEEEC--------CCCCEEEEeecccc
Q 048012 352 KFSSDGRILLSRSFDGSLKVWDLRKMK------EP-LK---VFEDLPNNYAQTNVAFS--------PDEQLFLTGTSVER 413 (616)
Q Consensus 352 ~~spdg~~l~s~s~Dg~v~lwd~~~~~------~~-~~---~~~~~~~~~~v~~v~fs--------pdg~~l~~gs~~~~ 413 (616)
.|++|.+.++.+-.+|.+.|||....- .+ +. .+...++ .+-.+.|. ||...|+++-
T Consensus 163 ~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~--kia~i~w~~g~~~~v~pdrP~lavcy---- 236 (1189)
T KOG2041|consen 163 LWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPT--KIAEIEWNTGPYQPVPPDRPRLAVCY---- 236 (1189)
T ss_pred eecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCc--cccceeeccCccccCCCCCCEEEEEE----
Confidence 999999999999999999999975311 11 11 1111111 24455553 5888999988
Q ss_pred ccCCCceEEEEeCCCCceEEEEecCCCCCeEEEEEcCCCCcEEEEeccC
Q 048012 414 ESTTGGLLCFYDREKLELVSRVGISPACSVVQCAWHPKLNQIFATAGDK 462 (616)
Q Consensus 414 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~ 462 (616)
..|.+.|..-.+......+.. .-.+....|+++|..|++++.+.
T Consensus 237 ---~nGr~QiMR~eND~~Pvv~dt--gm~~vgakWnh~G~vLAvcG~~~ 280 (1189)
T KOG2041|consen 237 ---ANGRMQIMRSENDPEPVVVDT--GMKIVGAKWNHNGAVLAVCGNDS 280 (1189)
T ss_pred ---cCceehhhhhcCCCCCeEEec--ccEeecceecCCCcEEEEccCcc
Confidence 788888887665555444433 35688999999999998887654
No 270
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.17 E-value=2.3e-09 Score=114.80 Aligned_cols=187 Identities=18% Similarity=0.140 Sum_probs=138.0
Q ss_pred CEEEEEeCCCCEEEEECCCccccceEEeeeccCCCCcc---EEEEEECCCCCeEEEEeCCCcEEEEeCCCCCCCCCceee
Q 048012 264 ETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPGRVA---VTTCAWDCDGKCIAGGIGDGSIQVWNLKPGWGSRPDIHV 340 (616)
Q Consensus 264 ~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~---v~~~~~sp~g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~ 340 (616)
..++....+..+.+||.........+.. ..+.. ..-+.++++.-++++|+.-+.|.+|+.... .... .
T Consensus 100 k~i~l~~~~ns~~i~d~~~~~~~~~i~~-----~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~d---n~p~-~ 170 (967)
T KOG0974|consen 100 KKIALVTSRNSLLIRDSKNSSVLSKIQS-----DERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHED---NKPI-R 170 (967)
T ss_pred ceEEEEEcCceEEEEecccCceehhcCC-----CceEEEEeEEEEeccCcEEEEEeccccccEEEEecccc---CCcc-e
Confidence 3677777788999999876543332221 11111 222345677778999999999999998732 1222 6
Q ss_pred ecCCCCCeEEEEEcCCCCeEEEEecCCcEEEEeCCCCCCcceEecCCCCCCcceeEEECCCCCEEEEeeccccccCCCce
Q 048012 341 EKGHSDDITALKFSSDGRILLSRSFDGSLKVWDLRKMKEPLKVFEDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGL 420 (616)
Q Consensus 341 ~~~h~~~V~~l~~spdg~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~ 420 (616)
+.+|.+.|.++.|+-||+++++.|.|.++++|++.+...... ....|...+..++|.|+ ++++++ .|.+
T Consensus 171 l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~--~~fgHsaRvw~~~~~~n--~i~t~g-------edct 239 (967)
T KOG0974|consen 171 LKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGC--TGFGHSARVWACCFLPN--RIITVG-------EDCT 239 (967)
T ss_pred ecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCc--ccccccceeEEEEeccc--eeEEec-------cceE
Confidence 889999999999999999999999999999999998665442 23446667999999998 899998 8999
Q ss_pred EEEEeCCCCceEEEEecCCCCCeEEEEEcCCCCcEEEEeccCCCCceEEEecccC
Q 048012 421 LCFYDREKLELVSRVGISPACSVVQCAWHPKLNQIFATAGDKSQGGTHILYDPRL 475 (616)
Q Consensus 421 i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~~~~~~~v~~~~~ 475 (616)
.++|+.. ++.+..+..+....+..++.++....+++++. ++.+++|++..
T Consensus 240 crvW~~~-~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~----Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 240 CRVWGVN-GTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGN----DSTLKLWDLNG 289 (967)
T ss_pred EEEEecc-cceehhhhhhhhcceeEEEEcCCceEEEeecc----Ccchhhhhhhc
Confidence 9999644 44444555544567899999988777777665 66777777553
No 271
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.16 E-value=2.3e-08 Score=115.04 Aligned_cols=266 Identities=13% Similarity=0.108 Sum_probs=163.5
Q ss_pred EEEEECCC-CCEEEEEEcCCcEEEEeCCCCcccccccee-c---------CCCCCCceEEEEecCCCCeEEEEe-CCCeE
Q 048012 153 SALAVDHS-GSRVLSGSYDYTVRMYDFQGMNSRLQSFRQ-L---------EPSEGHQVRNLSWSPTSDRFLCVT-GSAQA 220 (616)
Q Consensus 153 ~~v~~sp~-g~~lasgs~Dg~i~iwd~~~~~~~~~~~~~-~---------~~~~~~~v~~l~~sp~g~~l~~~s-~d~~v 220 (616)
..+++++. +.++++-+..+.|++||..+.. ...+.. . ....-.....|+++++++.|+++. .++.|
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G~~--i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~I 648 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLDGNF--IVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHAL 648 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCCCCE--EEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceE
Confidence 35788874 6677777788899999986531 111100 0 000112367899999888766654 45789
Q ss_pred EEEECCCCeeeeEeeCceeEeecccC-C---CcccceEEEEEcCCCCCEEEEEeCCCCEEEEECCCccccceEEeee---
Q 048012 221 KIYDRDGLTLGEFVKGDMYIRDLKNT-K---GHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKPK--- 293 (616)
Q Consensus 221 ~vwd~~~~~~~~~~~~~~~~~~~~~~-~---~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~--- 293 (616)
+++|+.+..+..+............- . .....-+.++|+|+++.++++.+.++.|++||..++... .+....
T Consensus 649 r~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~-~~~G~G~~~ 727 (1057)
T PLN02919 649 REIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTR-VFSGDGYER 727 (1057)
T ss_pred EEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEE-EEecCCccc
Confidence 99998877654442211100000000 0 001233678999966678888888999999998765321 111000
Q ss_pred --cc----CCCCccEEEEEECCCCC-eEEEEeCCCcEEEEeCCCCCCCCCcee-----------eec--------CCCCC
Q 048012 294 --LA----RPGRVAVTTCAWDCDGK-CIAGGIGDGSIQVWNLKPGWGSRPDIH-----------VEK--------GHSDD 347 (616)
Q Consensus 294 --~~----~~~~~~v~~~~~sp~g~-~l~~g~~dg~I~iwd~~~~~~~~~~~~-----------~~~--------~h~~~ 347 (616)
.. ...-.....++|+|+|+ ++++-+.++.|++||+.++. ...+. .+. ..-..
T Consensus 728 ~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~--~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~ 805 (1057)
T PLN02919 728 NLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGG--SRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQH 805 (1057)
T ss_pred cCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCc--EEEEEecccccCcccccccCCCCchhhhhccC
Confidence 00 00011356799999998 45555667999999988641 00000 000 01112
Q ss_pred eEEEEEcCCCCeEEEEecCCcEEEEeCCCCCCcceEecCC-----------CCCCcceeEEECCCCCEEEEeeccccccC
Q 048012 348 ITALKFSSDGRILLSRSFDGSLKVWDLRKMKEPLKVFEDL-----------PNNYAQTNVAFSPDEQLFLTGTSVEREST 416 (616)
Q Consensus 348 V~~l~~spdg~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~-----------~~~~~v~~v~fspdg~~l~~gs~~~~~~~ 416 (616)
..+|+|+++|+++++-..+++|++||..+.. .......- ........|+++++|+++++.+
T Consensus 806 P~Gvavd~dG~LYVADs~N~rIrviD~~tg~-v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt------- 877 (1057)
T PLN02919 806 PLGVLCAKDGQIYVADSYNHKIKKLDPATKR-VTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADT------- 877 (1057)
T ss_pred CceeeEeCCCcEEEEECCCCEEEEEECCCCe-EEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEEC-------
Confidence 4689999999999999999999999987532 12221100 0112467899999999888777
Q ss_pred CCceEEEEeCCCCce
Q 048012 417 TGGLLCFYDREKLEL 431 (616)
Q Consensus 417 ~dg~i~iwd~~~~~~ 431 (616)
.++.|++||+.+++.
T Consensus 878 ~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 878 NNSLIRYLDLNKGEA 892 (1057)
T ss_pred CCCEEEEEECCCCcc
Confidence 789999999998875
No 272
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.15 E-value=4.7e-09 Score=105.26 Aligned_cols=261 Identities=18% Similarity=0.249 Sum_probs=164.5
Q ss_pred EEEEECCCCCEEEEEEcCCcEEEEeCCCCccccccceecCCCCCCceEEEEecCCCCe--EEE-----EeCCCeEEEEEC
Q 048012 153 SALAVDHSGSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSDR--FLC-----VTGSAQAKIYDR 225 (616)
Q Consensus 153 ~~v~~sp~g~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~--l~~-----~s~d~~v~vwd~ 225 (616)
++..|+.|..+.|- -..+.|.+|+..+... .....+...|..+.+||.+.. +++ .+.-..|+||..
T Consensus 129 W~~qfs~dEsl~ar-lv~nev~f~~~~~f~~------~~~kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~ 201 (566)
T KOG2315|consen 129 WVPQFSIDESLAAR-LVSNEVQFYDLGSFKT------IQHKLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKY 201 (566)
T ss_pred cccccccchhhhhh-hhcceEEEEecCCccc------eeeeeeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEecc
Confidence 58888888654331 2245699999876321 122234566899999987442 332 133468999987
Q ss_pred CCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCC-----------CCEEEEECCCccccceEEeeec
Q 048012 226 DGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSED-----------GSLRIWDVNEFKSQKQVIKPKL 294 (616)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~D-----------g~v~iwd~~~~~~~~~~~~~~~ 294 (616)
........ +..-.-....=..+.|++.+..+|+.++.| .++++.++....+. +.
T Consensus 202 ~~~~~~~~---------~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~--V~---- 266 (566)
T KOG2315|consen 202 PEEGQHQP---------VANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVS--VP---- 266 (566)
T ss_pred ccccccch---------hhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEE--Ee----
Confidence 62221110 000000112224567887776566555432 46777777622221 11
Q ss_pred cCCCCccEEEEEECCCCCeEEE--EeCCCcEEEEeCCCCCCCCCceeeecCCCCCeEEEEEcCCCCeEEEEecC---CcE
Q 048012 295 ARPGRVAVTTCAWDCDGKCIAG--GIGDGSIQVWNLKPGWGSRPDIHVEKGHSDDITALKFSSDGRILLSRSFD---GSL 369 (616)
Q Consensus 295 ~~~~~~~v~~~~~sp~g~~l~~--g~~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~D---g~v 369 (616)
....++|.++.|+++|+-+++ |..=..+.|||++.. .+. .--.++-+++-|+|.|++|+.+|.+ |.|
T Consensus 267 -L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~-----~v~--df~egpRN~~~fnp~g~ii~lAGFGNL~G~m 338 (566)
T KOG2315|consen 267 -LLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGK-----PVF--DFPEGPRNTAFFNPHGNIILLAGFGNLPGDM 338 (566)
T ss_pred -cCCCCCceEEEECCCCCEEEEEEecccceEEEEcCCCC-----EeE--eCCCCCccceEECCCCCEEEEeecCCCCCce
Confidence 122348999999999987655 556678999999853 333 3345667889999999999998864 789
Q ss_pred EEEeCCCCCCcceEecCCCCCCcceeEEECCCCCEEEEeeccccccCCCceEEEEeCCCCceEEEEecCCCCCeEEEEEc
Q 048012 370 KVWDLRKMKEPLKVFEDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREKLELVSRVGISPACSVVQCAWH 449 (616)
Q Consensus 370 ~lwd~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~ 449 (616)
-|||+.+ ...+..+.. ...+-+.|+|||++++|++...+.. .|+.++||+. +|.++....+.. ....+.|-
T Consensus 339 EvwDv~n-~K~i~~~~a----~~tt~~eW~PdGe~flTATTaPRlr-vdNg~Kiwhy-tG~~l~~~~f~s--EL~qv~W~ 409 (566)
T KOG2315|consen 339 EVWDVPN-RKLIAKFKA----ANTTVFEWSPDGEYFLTATTAPRLR-VDNGIKIWHY-TGSLLHEKMFKS--ELLQVEWR 409 (566)
T ss_pred EEEeccc-hhhcccccc----CCceEEEEcCCCcEEEEEeccccEE-ecCCeEEEEe-cCceeehhhhhH--hHhheeee
Confidence 9999987 333444433 2256689999999999999653322 4777999996 566665544421 47888998
Q ss_pred CCC
Q 048012 450 PKL 452 (616)
Q Consensus 450 p~~ 452 (616)
|-.
T Consensus 410 P~~ 412 (566)
T KOG2315|consen 410 PFN 412 (566)
T ss_pred ecC
Confidence 753
No 273
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.14 E-value=7.1e-08 Score=96.11 Aligned_cols=247 Identities=18% Similarity=0.132 Sum_probs=142.2
Q ss_pred ECCCCCEEEEEEc----------CCcEEEEeCCCCccccccceecCCC------CCCceEEEEecCCCCeEEEEe-C-CC
Q 048012 157 VDHSGSRVLSGSY----------DYTVRMYDFQGMNSRLQSFRQLEPS------EGHQVRNLSWSPTSDRFLCVT-G-SA 218 (616)
Q Consensus 157 ~sp~g~~lasgs~----------Dg~i~iwd~~~~~~~~~~~~~~~~~------~~~~v~~l~~sp~g~~l~~~s-~-d~ 218 (616)
++|+|+.|+.+.. +..|.+||..+.... ..+... .+.....++++|+|++|++.. . +.
T Consensus 53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~----~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~ 128 (352)
T TIGR02658 53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPI----ADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSP 128 (352)
T ss_pred ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEE----eEEccCCCchhhccCccceEEECCCCCEEEEecCCCCC
Confidence 8999998877765 789999999875421 111111 122355899999999999776 3 68
Q ss_pred eEEEEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEEEECCCccccceEEeeeccCCC
Q 048012 219 QAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPG 298 (616)
Q Consensus 219 ~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~ 298 (616)
.|.|+|+...++.....- ..+..-...+. . -+..-+.||......+.+..... ..........
T Consensus 129 ~V~VvD~~~~kvv~ei~v-------------p~~~~vy~t~e-~--~~~~~~~Dg~~~~v~~d~~g~~~-~~~~~vf~~~ 191 (352)
T TIGR02658 129 AVGVVDLEGKAFVRMMDV-------------PDCYHIFPTAN-D--TFFMHCRDGSLAKVGYGTKGNPK-IKPTEVFHPE 191 (352)
T ss_pred EEEEEECCCCcEEEEEeC-------------CCCcEEEEecC-C--ccEEEeecCceEEEEecCCCceE-EeeeeeecCC
Confidence 999999998775332110 00111111111 1 11122234444333332211111 0000000000
Q ss_pred CccEEE-EEECC-CCCeEEEEeCCCcEEEEeCCCCCC-CCCceeeecC-------CCCCeEEEEEcCCCCeEEEEe----
Q 048012 299 RVAVTT-CAWDC-DGKCIAGGIGDGSIQVWNLKPGWG-SRPDIHVEKG-------HSDDITALKFSSDGRILLSRS---- 364 (616)
Q Consensus 299 ~~~v~~-~~~sp-~g~~l~~g~~dg~I~iwd~~~~~~-~~~~~~~~~~-------h~~~V~~l~~spdg~~l~s~s---- 364 (616)
...+.. -.|.+ +|+++++... |+|.+.|+..... .......+.. ..+.+.-++++++++.|+...
T Consensus 192 ~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~ 270 (352)
T TIGR02658 192 DEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRA 270 (352)
T ss_pred ccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCc
Confidence 000000 03445 8888888877 9999999654310 1111221111 223345599999999888743
Q ss_pred ------cCCcEEEEeCCCCCCcceEecCCCCCCcceeEEECCCCC-EEEEeeccccccCCCceEEEEeCCCCceEEEE
Q 048012 365 ------FDGSLKVWDLRKMKEPLKVFEDLPNNYAQTNVAFSPDEQ-LFLTGTSVERESTTGGLLCFYDREKLELVSRV 435 (616)
Q Consensus 365 ------~Dg~v~lwd~~~~~~~~~~~~~~~~~~~v~~v~fspdg~-~l~~gs~~~~~~~~dg~i~iwd~~~~~~~~~~ 435 (616)
..+.|.++|+.+.+. +..+. -...+..++|+||++ +|++... .++.|.++|+.+++.+.++
T Consensus 271 ~~thk~~~~~V~ViD~~t~kv-i~~i~---vG~~~~~iavS~Dgkp~lyvtn~------~s~~VsViD~~t~k~i~~i 338 (352)
T TIGR02658 271 KWTHKTASRFLFVVDAKTGKR-LRKIE---LGHEIDSINVSQDAKPLLYALST------GDKTLYIFDAETGKELSSV 338 (352)
T ss_pred cccccCCCCEEEEEECCCCeE-EEEEe---CCCceeeEEECCCCCeEEEEeCC------CCCcEEEEECcCCeEEeee
Confidence 124799999987543 33322 223488999999999 7776652 5788999999999999998
No 274
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.13 E-value=1.6e-07 Score=93.72 Aligned_cols=277 Identities=10% Similarity=0.035 Sum_probs=156.1
Q ss_pred CcEEEEeCCCCccccccceecCCCCCCceEEEEecCCCCeEEEEeC----------CCeEEEEECCCCeeeeEeeCceeE
Q 048012 171 YTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSDRFLCVTG----------SAQAKIYDRDGLTLGEFVKGDMYI 240 (616)
Q Consensus 171 g~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~s~----------d~~v~vwd~~~~~~~~~~~~~~~~ 240 (616)
++|.+.|..+.. ....+..+. .-..+ +||+++.|+++.. +..|.|||..+.+..........
T Consensus 27 ~~v~ViD~~~~~----v~g~i~~G~--~P~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~- 98 (352)
T TIGR02658 27 TQVYTIDGEAGR----VLGMTDGGF--LPNPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEG- 98 (352)
T ss_pred ceEEEEECCCCE----EEEEEEccC--CCcee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCC-
Confidence 789999987642 112222221 22234 9999999887766 68999999998765322110000
Q ss_pred eecccCCCcccceEEEEEcCCCCCEEEEEeC-CCCEEEEECCCccccceEEeeeccCCCCccEEEEEECCCCCeEEEEeC
Q 048012 241 RDLKNTKGHICGLTCGEWHPKTKETILTSSE-DGSLRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWDCDGKCIAGGIG 319 (616)
Q Consensus 241 ~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~-Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~g~~ 319 (616)
.+ ......-..++++|+++.++++--. +..|.+.|+.+.+....+..+. ...-...+.+..+ +-|.
T Consensus 99 --p~--~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~-------~~~vy~t~e~~~~--~~~~ 165 (352)
T TIGR02658 99 --PR--FLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPD-------CYHIFPTANDTFF--MHCR 165 (352)
T ss_pred --ch--hhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCC-------CcEEEEecCCccE--EEee
Confidence 00 0012233477899998644444424 7899999999877666554321 1111222222222 2234
Q ss_pred CCcEEEEeCCCCCCCC-CceeeecCCCCCeE-EEEEcC-CCCeEEEEecCCcEEEEeCCCCC----CcceEecCCC----
Q 048012 320 DGSIQVWNLKPGWGSR-PDIHVEKGHSDDIT-ALKFSS-DGRILLSRSFDGSLKVWDLRKMK----EPLKVFEDLP---- 388 (616)
Q Consensus 320 dg~I~iwd~~~~~~~~-~~~~~~~~h~~~V~-~l~~sp-dg~~l~s~s~Dg~v~lwd~~~~~----~~~~~~~~~~---- 388 (616)
||......+....... .....+..-...+. .-.|.+ +|++++.... |+|.+.|+.... .++..+....
T Consensus 166 Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~ 244 (352)
T TIGR02658 166 DGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADG 244 (352)
T ss_pred cCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccc
Confidence 5555554433211000 00001111000000 004455 8887777665 999999975322 2222221110
Q ss_pred -CCCcceeEEECCCCCEEEEeeccc-ccc--CCCceEEEEeCCCCceEEEEecCCCCCeEEEEEcCCCC-cEEEEeccCC
Q 048012 389 -NNYAQTNVAFSPDEQLFLTGTSVE-RES--TTGGLLCFYDREKLELVSRVGISPACSVVQCAWHPKLN-QIFATAGDKS 463 (616)
Q Consensus 389 -~~~~v~~v~fspdg~~l~~gs~~~-~~~--~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~-~l~~~~~d~~ 463 (616)
....+.-+++++++++|++..... .+. ...+.|.++|+.+++.+..+... ..+..++++|+++ .|+++...
T Consensus 245 wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG--~~~~~iavS~Dgkp~lyvtn~~-- 320 (352)
T TIGR02658 245 WRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELG--HEIDSINVSQDAKPLLYALSTG-- 320 (352)
T ss_pred cCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeCC--CceeeEEECCCCCeEEEEeCCC--
Confidence 111233499999999998853110 001 13368999999999999999763 4689999999999 77777753
Q ss_pred CCceEEEeccc
Q 048012 464 QGGTHILYDPR 474 (616)
Q Consensus 464 ~~~~~~v~~~~ 474 (616)
.+.+.|+|.+
T Consensus 321 -s~~VsViD~~ 330 (352)
T TIGR02658 321 -DKTLYIFDAE 330 (352)
T ss_pred -CCcEEEEECc
Confidence 6678888876
No 275
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.13 E-value=1.7e-10 Score=118.35 Aligned_cols=216 Identities=17% Similarity=0.315 Sum_probs=148.3
Q ss_pred ceEEecCCcccEEEEEECCCC-CEEEEEEcCCcEEEEeCCCCccccccceecCCCCCCceEEEEecCCCCeEEEEeCCCe
Q 048012 141 NEIVLKGHTKIVSALAVDHSG-SRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSDRFLCVTGSAQ 219 (616)
Q Consensus 141 ~~~~l~~H~~~V~~v~~sp~g-~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~s~d~~ 219 (616)
-++.|.||+.+|+.+.|+|.. ..|++++.|-.|..||+.+....+..+... ......|.|+-....+++.+....
T Consensus 106 Ief~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w----~s~asqVkwnyk~p~vlasshg~~ 181 (1081)
T KOG0309|consen 106 IEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSW----RSAASQVKWNYKDPNVLASSHGND 181 (1081)
T ss_pred eEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecc----cccCceeeecccCcchhhhccCCc
Confidence 367899999999999999875 489999999999999998754333332222 223677899988777888888899
Q ss_pred EEEEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEEEECCCccccceEEeeeccCCCC
Q 048012 220 AKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPGR 299 (616)
Q Consensus 220 v~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~ 299 (616)
|++||...+. ..+..+++|...|+.+.|+..-...+.+++.|++|++||.............. .
T Consensus 182 i~vwd~r~gs-----------~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt-----~ 245 (1081)
T KOG0309|consen 182 IFVWDLRKGS-----------TPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTT-----N 245 (1081)
T ss_pred eEEEeccCCC-----------cceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccc-----c
Confidence 9999987544 23555788999999999987655679999999999999987543222221111 1
Q ss_pred ccEEEEEECCCCC--eEEEEeCCCcEEEEeCCCC------CCCCCceeeecCCCCCeEEEEEcCCC----------CeEE
Q 048012 300 VAVTTCAWDCDGK--CIAGGIGDGSIQVWNLKPG------WGSRPDIHVEKGHSDDITALKFSSDG----------RILL 361 (616)
Q Consensus 300 ~~v~~~~~sp~g~--~l~~g~~dg~I~iwd~~~~------~~~~~~~~~~~~h~~~V~~l~~spdg----------~~l~ 361 (616)
.+|.--.|.|-|. ++.---.+..+.+++.+.. ......+..+.+|...|....|-..+ -.|+
T Consensus 246 ~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLV 325 (1081)
T KOG0309|consen 246 FPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLV 325 (1081)
T ss_pred CcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEE
Confidence 1445555555333 2211111223444333221 01336788999999988777664422 2799
Q ss_pred EEecCCcEEEEeCCC
Q 048012 362 SRSFDGSLKVWDLRK 376 (616)
Q Consensus 362 s~s~Dg~v~lwd~~~ 376 (616)
|-+.|.++++|-+.+
T Consensus 326 TWSkD~~lrlWpI~~ 340 (1081)
T KOG0309|consen 326 TWSKDQTLRLWPIDS 340 (1081)
T ss_pred EeecCCceEeeeccH
Confidence 999999999998753
No 276
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.13 E-value=4.9e-08 Score=110.31 Aligned_cols=273 Identities=13% Similarity=0.138 Sum_probs=163.5
Q ss_pred CcccEEEEEECCCCCEEEEEEcCCcEEEE----eCCCCccccccceecCCCCCCceEEEEecCCCCeEEEEeCCCeEEEE
Q 048012 148 HTKIVSALAVDHSGSRVLSGSYDYTVRMY----DFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSDRFLCVTGSAQAKIY 223 (616)
Q Consensus 148 H~~~V~~v~~sp~g~~lasgs~Dg~i~iw----d~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~s~d~~v~vw 223 (616)
....|.++.|-++...++.+..+|.|.+. +.... ..... ..-...|.+++||||+..|+.+++++++.+.
T Consensus 74 ~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~--~~E~V----G~vd~GI~a~~WSPD~Ella~vT~~~~l~~m 147 (928)
T PF04762_consen 74 PNDKIVSFQYLADSESLCIALASGDIILVREDPDPDED--EIEIV----GSVDSGILAASWSPDEELLALVTGEGNLLLM 147 (928)
T ss_pred CCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCc--eeEEE----EEEcCcEEEEEECCCcCEEEEEeCCCEEEEE
Confidence 45789999999999999999999999999 43332 11111 1234459999999999999999999999998
Q ss_pred ECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEEEECCCccccce-EEeee------ccC
Q 048012 224 DRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQ-VIKPK------LAR 296 (616)
Q Consensus 224 d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~~-~~~~~------~~~ 296 (616)
+.+-..+.+.. +....- +....++.++...=.-|.=..++.... ...+. ...
T Consensus 148 t~~fd~i~E~~--------l~~~~~-------------~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~ 206 (928)
T PF04762_consen 148 TRDFDPISEVP--------LDSDDF-------------GESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKL 206 (928)
T ss_pred eccceEEEEee--------cCcccc-------------CCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCcc
Confidence 76644433321 110000 112233333222111111111111000 00000 000
Q ss_pred CCCccEEEEEECCCCCeEEEEeC---C---CcEEEEeCCCCCCCCCceeeecCCCCCeEEEEEcCCCCeEEEEec---CC
Q 048012 297 PGRVAVTTCAWDCDGKCIAGGIG---D---GSIQVWNLKPGWGSRPDIHVEKGHSDDITALKFSSDGRILLSRSF---DG 367 (616)
Q Consensus 297 ~~~~~v~~~~~sp~g~~l~~g~~---d---g~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~---Dg 367 (616)
.....-..++|-.||.++|+.+. . ..|+||+-. | ....+...-.+--.+++|.|.|++||+... ..
T Consensus 207 s~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G----~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~ 281 (928)
T PF04762_consen 207 SWDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-G----ELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRH 281 (928)
T ss_pred ccCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-c----eEEeccccCCCccCCccCCCCCCEEEEEEEcCCCc
Confidence 01224567899999999999875 3 479999966 3 233333323333457999999999998874 34
Q ss_pred cEEEEeCCCCCCcceEecCCCCCCcceeEEECCCCCEEEEeeccccccCCCceEEEEeCCCCce--EEEEecCCCCCeEE
Q 048012 368 SLKVWDLRKMKEPLKVFEDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREKLEL--VSRVGISPACSVVQ 445 (616)
Q Consensus 368 ~v~lwd~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~~~~--~~~~~~~~~~~v~~ 445 (616)
.|.+|.-+..+.---.+........|..+.|++|+..|+... .+ .|.+|-+.+..- -+.+.+.....+..
T Consensus 282 ~VvFfErNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~-------~~-~vqLWt~~NYHWYLKqei~~~~~~~~~~ 353 (928)
T PF04762_consen 282 DVVFFERNGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWL-------ED-RVQLWTRSNYHWYLKQEIRFSSSESVNF 353 (928)
T ss_pred EEEEEecCCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEe-------cC-CceEEEeeCCEEEEEEEEEccCCCCCCc
Confidence 577776443221111111113445689999999999999976 34 499999988753 34444444555667
Q ss_pred EEEcCCCC-cEEEEec
Q 048012 446 CAWHPKLN-QIFATAG 460 (616)
Q Consensus 446 ~~~~p~~~-~l~~~~~ 460 (616)
+.|||... .|.+.+.
T Consensus 354 ~~Wdpe~p~~L~v~t~ 369 (928)
T PF04762_consen 354 VKWDPEKPLRLHVLTS 369 (928)
T ss_pred eEECCCCCCEEEEEec
Confidence 99999654 3555554
No 277
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.11 E-value=5.6e-08 Score=111.92 Aligned_cols=258 Identities=15% Similarity=0.112 Sum_probs=148.6
Q ss_pred EEEEecCC-CCeEEEEeCCCeEEEEECCCCeeeeEee-CceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEE
Q 048012 200 RNLSWSPT-SDRFLCVTGSAQAKIYDRDGLTLGEFVK-GDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRI 277 (616)
Q Consensus 200 ~~l~~sp~-g~~l~~~s~d~~v~vwd~~~~~~~~~~~-~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~i 277 (616)
..+++++. +..+++-+.++.|++||..+..+..+.. +..-..+-.....+......+++.+++..++++-...+.|++
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir~ 650 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLDGNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALRE 650 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCCCCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEEE
Confidence 46788875 4556666778899999988765433211 000000000001223345788999876434454455678999
Q ss_pred EECCCccccceEEeee----ccCCC-------CccEEEEEECC-CCCeEEEEeCCCcEEEEeCCCCCCCCCceeeec---
Q 048012 278 WDVNEFKSQKQVIKPK----LARPG-------RVAVTTCAWDC-DGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEK--- 342 (616)
Q Consensus 278 wd~~~~~~~~~~~~~~----~~~~~-------~~~v~~~~~sp-~g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~--- 342 (616)
+|+.++. ...+.... ...++ -.....++|++ ++.++++...++.|++||..++. +..+.
T Consensus 651 id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~-----v~~~~G~G 724 (1057)
T PLN02919 651 IDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGV-----TRVFSGDG 724 (1057)
T ss_pred EecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCe-----EEEEecCC
Confidence 9987643 22221100 00000 01246789999 56667777788999999987651 11111
Q ss_pred ------C------CCCCeEEEEEcCCCCe-EEEEecCCcEEEEeCCCCCCcceE------------ecCC------CCCC
Q 048012 343 ------G------HSDDITALKFSSDGRI-LLSRSFDGSLKVWDLRKMKEPLKV------------FEDL------PNNY 391 (616)
Q Consensus 343 ------~------h~~~V~~l~~spdg~~-l~s~s~Dg~v~lwd~~~~~~~~~~------------~~~~------~~~~ 391 (616)
+ .-...+.|+|+|+++. +++-+.++.|++||+.++...+.. +... ....
T Consensus 725 ~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~ 804 (1057)
T PLN02919 725 YERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQ 804 (1057)
T ss_pred ccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhcc
Confidence 1 1123567999999984 455566789999999864321110 0000 0011
Q ss_pred cceeEEECCCCCEEEEeeccccccCCCceEEEEeCCCCceEEEEecCC------------CCCeEEEEEcCCCCcEEEEe
Q 048012 392 AQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREKLELVSRVGISP------------ACSVVQCAWHPKLNQIFATA 459 (616)
Q Consensus 392 ~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~------------~~~v~~~~~~p~~~~l~~~~ 459 (616)
....++|+++|.++++.. .++.|++||..++.......... -.....++++++++.+++-+
T Consensus 805 ~P~Gvavd~dG~LYVADs-------~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt 877 (1057)
T PLN02919 805 HPLGVLCAKDGQIYVADS-------YNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADT 877 (1057)
T ss_pred CCceeeEeCCCcEEEEEC-------CCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEEC
Confidence 246899999999877776 78999999998876654332110 01345566666665333333
Q ss_pred ccCCCCceEEEeccc
Q 048012 460 GDKSQGGTHILYDPR 474 (616)
Q Consensus 460 ~d~~~~~~~~v~~~~ 474 (616)
. ++.+++|++.
T Consensus 878 ~----Nn~Irvid~~ 888 (1057)
T PLN02919 878 N----NSLIRYLDLN 888 (1057)
T ss_pred C----CCEEEEEECC
Confidence 2 5666666654
No 278
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=99.08 E-value=1.6e-07 Score=87.49 Aligned_cols=251 Identities=16% Similarity=0.142 Sum_probs=140.4
Q ss_pred EEECCCCCEEEEEEcCCcEEEEeCCCCccccccceecCCCCCCceEEEEecCCCCeEEEEeCCCeEEEEECCCCeeeeEe
Q 048012 155 LAVDHSGSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSDRFLCVTGSAQAKIYDRDGLTLGEFV 234 (616)
Q Consensus 155 v~~sp~g~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~s~d~~v~vwd~~~~~~~~~~ 234 (616)
++.+.+|++||.- .|..|.|=...+.-........+.....-.-+-++||||+..|+.+...|+|++||+.+..+....
T Consensus 3 ~~~~~~Gk~lAi~-qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~lf~I~ 81 (282)
T PF15492_consen 3 LALSSDGKLLAIL-QDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSELFVIP 81 (282)
T ss_pred eeecCCCcEEEEE-eccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecccceeEEcC
Confidence 5677888888764 466666665443221111111222223334778999999999999999999999999987664332
Q ss_pred eCceeEeecccCCCcccceEEEEEcCCC-----CCEEEEEeCCCCEEEEECCCc--cccceEEeeeccCCCCccEEEEEE
Q 048012 235 KGDMYIRDLKNTKGHICGLTCGEWHPKT-----KETILTSSEDGSLRIWDVNEF--KSQKQVIKPKLARPGRVAVTTCAW 307 (616)
Q Consensus 235 ~~~~~~~~~~~~~~h~~~v~~~~~~p~~-----~~~l~s~s~Dg~v~iwd~~~~--~~~~~~~~~~~~~~~~~~v~~~~~ 307 (616)
.... ....-...|..+.|.... ...|++-..+|.++-|-+..+ +.................|.++.|
T Consensus 82 p~~~------~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy 155 (282)
T PF15492_consen 82 PAMS------FPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVY 155 (282)
T ss_pred cccc------cCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEE
Confidence 2111 111224556666665432 235777778888888876332 222222221221222347999999
Q ss_pred CCCCCeEEEEeCCCcEEEEeCCCCCCCCCceeeecCCCCCeEEEEEcCCCCe--EEEEecCCc------EEEEeCCCCCC
Q 048012 308 DCDGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHSDDITALKFSSDGRI--LLSRSFDGS------LKVWDLRKMKE 379 (616)
Q Consensus 308 sp~g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~--l~s~s~Dg~------v~lwd~~~~~~ 379 (616)
+|..++|++|+.... +.+ ...+-...+++=..-.+..+ .++...|+. ..+|.+-+
T Consensus 156 ~p~h~LLlVgG~~~~------~~~--------~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~--- 218 (282)
T PF15492_consen 156 HPKHRLLLVGGCEQN------QDG--------MSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPS--- 218 (282)
T ss_pred cCCCCEEEEeccCCC------CCc--------cccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccc---
Confidence 999888887764322 000 00011111222111111111 111111211 12333222
Q ss_pred cceEecC-CCCCCcceeEEECCCCCEEEEeeccccccCCCceEEEEeCCCCceEEEEec
Q 048012 380 PLKVFED-LPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREKLELVSRVGI 437 (616)
Q Consensus 380 ~~~~~~~-~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~~~~~~~~~~ 437 (616)
++.+.. ......|..|.+||||+.|++.. .+|.|.||++.+..+......
T Consensus 219 -~~~fs~~~~~~d~i~kmSlSPdg~~La~ih-------~sG~lsLW~iPsL~~~~~W~~ 269 (282)
T PF15492_consen 219 -FKFFSRQGQEQDGIFKMSLSPDGSLLACIH-------FSGSLSLWEIPSLRLQRSWKQ 269 (282)
T ss_pred -eeeeeccccCCCceEEEEECCCCCEEEEEE-------cCCeEEEEecCcchhhcccch
Confidence 111111 12334589999999999999999 899999999999888776644
No 279
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=99.05 E-value=7.4e-07 Score=86.46 Aligned_cols=226 Identities=19% Similarity=0.279 Sum_probs=147.7
Q ss_pred EEEecC-CCCeEEEEeCCCeEEEEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEc-CCCCCEEEEEeCCCCEEEE
Q 048012 201 NLSWSP-TSDRFLCVTGSAQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWH-PKTKETILTSSEDGSLRIW 278 (616)
Q Consensus 201 ~l~~sp-~g~~l~~~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~-p~~~~~l~s~s~Dg~v~iw 278 (616)
++.|.+ ++.++++-...+.|..|+..+.....+. +.+ ...+.+. ++ ..|+.+...+ +.++
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~~-----------~~~----~~G~~~~~~~--g~l~v~~~~~-~~~~ 65 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVID-----------LPG----PNGMAFDRPD--GRLYVADSGG-IAVV 65 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEE-----------SSS----EEEEEEECTT--SEEEEEETTC-EEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEEEe-----------cCC----CceEEEEccC--CEEEEEEcCc-eEEE
Confidence 577887 5555555556889999999887653221 111 5667777 54 3556666544 6666
Q ss_pred ECCCccccceEEeeeccCCCCccEEEEEECCCCCeEEEEeCC--------CcEEEEeCCCCCCCCCceeeecCCCCCeEE
Q 048012 279 DVNEFKSQKQVIKPKLARPGRVAVTTCAWDCDGKCIAGGIGD--------GSIQVWNLKPGWGSRPDIHVEKGHSDDITA 350 (616)
Q Consensus 279 d~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~g~~d--------g~I~iwd~~~~~~~~~~~~~~~~h~~~V~~ 350 (616)
|+.+++... +.............+.+++.++|++.++.... |.|..++.. + .+......-...+.
T Consensus 66 d~~~g~~~~-~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~-----~~~~~~~~~~~pNG 138 (246)
T PF08450_consen 66 DPDTGKVTV-LADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-G-----KVTVVADGLGFPNG 138 (246)
T ss_dssp ETTTTEEEE-EEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-S-----EEEEEEEEESSEEE
T ss_pred ecCCCcEEE-EeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-C-----eEEEEecCcccccc
Confidence 988764332 22221111134578999999999977776643 567778776 3 22222233455789
Q ss_pred EEEcCCCCeEE-EEecCCcEEEEeCCCCCCc---ceEecCCCCC-CcceeEEECCCCCEEEEeeccccccCCCceEEEEe
Q 048012 351 LKFSSDGRILL-SRSFDGSLKVWDLRKMKEP---LKVFEDLPNN-YAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYD 425 (616)
Q Consensus 351 l~~spdg~~l~-s~s~Dg~v~lwd~~~~~~~---~~~~~~~~~~-~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd 425 (616)
|+|+|+++.|+ +-+..+.|..|++...... ...+...... ...-.+++..+|++.++.. ..+.|.++|
T Consensus 139 i~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~-------~~~~I~~~~ 211 (246)
T PF08450_consen 139 IAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADW-------GGGRIVVFD 211 (246)
T ss_dssp EEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEE-------TTTEEEEEE
T ss_pred eEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEc-------CCCEEEEEC
Confidence 99999998776 5567788999998643331 1222222222 2367899999999888876 789999999
Q ss_pred CCCCceEEEEecCCCCCeEEEEE-cCCCCcEEEEec
Q 048012 426 REKLELVSRVGISPACSVVQCAW-HPKLNQIFATAG 460 (616)
Q Consensus 426 ~~~~~~~~~~~~~~~~~v~~~~~-~p~~~~l~~~~~ 460 (616)
.. ++++..+..+ ...+++|+| -++.+.|+++++
T Consensus 212 p~-G~~~~~i~~p-~~~~t~~~fgg~~~~~L~vTta 245 (246)
T PF08450_consen 212 PD-GKLLREIELP-VPRPTNCAFGGPDGKTLYVTTA 245 (246)
T ss_dssp TT-SCEEEEEE-S-SSSEEEEEEESTTSSEEEEEEB
T ss_pred CC-ccEEEEEcCC-CCCEEEEEEECCCCCEEEEEeC
Confidence 87 9999999876 458999999 578888888764
No 280
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.03 E-value=9.7e-10 Score=122.94 Aligned_cols=191 Identities=19% Similarity=0.310 Sum_probs=143.7
Q ss_pred CCcccceEEEEEcCCCCCEEEEEeCCCCEEEEECCCccccceEEeeeccCCCCccEEEEEECCCCCeEEEEeCCCcEEEE
Q 048012 247 KGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWDCDGKCIAGGIGDGSIQVW 326 (616)
Q Consensus 247 ~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~g~~dg~I~iw 326 (616)
+.+...|.++.-||.. .+.+||+.||.|++|....+..+..... .+...|+.+.|+.+|+.+.++..||.|.+|
T Consensus 2205 k~~v~~v~r~~sHp~~-~~Yltgs~dgsv~~~~w~~~~~v~~~rt-----~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~ 2278 (2439)
T KOG1064|consen 2205 KHPVENVRRMTSHPSD-PYYLTGSQDGSVRMFEWGHGQQVVCFRT-----AGNSRVTRSRFNHQGNKFGIVDGDGDLSLW 2278 (2439)
T ss_pred ecccCceeeecCCCCC-ceEEecCCCceEEEEeccCCCeEEEeec-----cCcchhhhhhhcccCCceeeeccCCceeec
Confidence 4567788888889976 4899999999999999876554433321 223589999999999999999999999999
Q ss_pred eCCCCCCCCCceeeecCCCCCeEEEEEcCCCCeEEEEe---cCCcEEEEeCCCCCCcceEecCCCCCCcceeEEECCCCC
Q 048012 327 NLKPGWGSRPDIHVEKGHSDDITALKFSSDGRILLSRS---FDGSLKVWDLRKMKEPLKVFEDLPNNYAQTNVAFSPDEQ 403 (616)
Q Consensus 327 d~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s---~Dg~v~lwd~~~~~~~~~~~~~~~~~~~v~~v~fspdg~ 403 (616)
.+.. ..+...+.|....+.+.|-. ..+++++ .++.+.+||.........+... |...++++++-|..+
T Consensus 2279 q~~p-----k~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~--H~~gaT~l~~~P~~q 2349 (2439)
T KOG1064|consen 2279 QASP-----KPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTC--HDGGATVLAYAPKHQ 2349 (2439)
T ss_pred ccCC-----cceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceeeee--cCCCceEEEEcCcce
Confidence 9873 57778889999888888874 6777765 4678999997653332222233 445599999999999
Q ss_pred EEEEeeccccccCCCceEEEEeCCCCceEEEEecCCCCCeEEEEEcCCCCcEEEEeccCCCCceEEEeccc
Q 048012 404 LFLTGTSVERESTTGGLLCFYDREKLELVSRVGISPACSVVQCAWHPKLNQIFATAGDKSQGGTHILYDPR 474 (616)
Q Consensus 404 ~l~~gs~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~~~~~~~v~~~~ 474 (616)
+|++|+ .+|.|++||++..+++++++. |+ ...+++++.. .+.+.||++.
T Consensus 2350 llisgg-------r~G~v~l~D~rqrql~h~~~~----------~~-~~~~f~~~ss----~g~ikIw~~s 2398 (2439)
T KOG1064|consen 2350 LLISGG-------RKGEVCLFDIRQRQLRHTFQA----------LD-TREYFVTGSS----EGNIKIWRLS 2398 (2439)
T ss_pred EEEecC-------CcCcEEEeehHHHHHHHHhhh----------hh-hhheeeccCc----ccceEEEEcc
Confidence 999999 899999999998887776643 44 3344544444 4555555543
No 281
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.01 E-value=2.9e-09 Score=105.97 Aligned_cols=289 Identities=15% Similarity=0.192 Sum_probs=180.8
Q ss_pred eEEecCCcccEEEEEECCCCCEEEEEEcCCcEEEEeCCCCccccc--cceecCCCCCCceEEEEecCCCCeEEEEeCCCe
Q 048012 142 EIVLKGHTKIVSALAVDHSGSRVLSGSYDYTVRMYDFQGMNSRLQ--SFRQLEPSEGHQVRNLSWSPTSDRFLCVTGSAQ 219 (616)
Q Consensus 142 ~~~l~~H~~~V~~v~~sp~g~~lasgs~Dg~i~iwd~~~~~~~~~--~~~~~~~~~~~~v~~l~~sp~g~~l~~~s~d~~ 219 (616)
...+.||+..|++++--.+.+-+++++.|.+|++|.+........ ...-....|..+|.++.|-.+.+++ ++.|+.
T Consensus 728 L~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i--~ScD~g 805 (1034)
T KOG4190|consen 728 LCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSI--ASCDGG 805 (1034)
T ss_pred eecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeecccee--eeccCc
Confidence 446789999999998777888999999999999999875432221 1222334577789999999887765 567889
Q ss_pred EEEEECCCCee-eeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEEEECCCccccceEEeeeccCCC
Q 048012 220 AKIYDRDGLTL-GEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPG 298 (616)
Q Consensus 220 v~vwd~~~~~~-~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~ 298 (616)
|.+||.--+.+ .+.. -....+....|.|+.-- +..-+++-|+...+|+++|.+.......+..... .+.
T Consensus 806 iHlWDPFigr~Laq~~--------dapk~~a~~~ikcl~nv-~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna-~~P 875 (1034)
T KOG4190|consen 806 IHLWDPFIGRLLAQME--------DAPKEGAGGNIKCLENV-DRHILIAGCSAESTVKLFDARSCEWTCELKVCNA-PGP 875 (1034)
T ss_pred ceeecccccchhHhhh--------cCcccCCCceeEecccC-cchheeeeccchhhheeeecccccceeeEEeccC-CCC
Confidence 99999543321 1100 00012333344554321 1223444458899999999987665544433322 233
Q ss_pred CccEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCCCCCceeeecCCCCCeEEEEEcCCCCeEEEEecCCcEEE-EeCCCC
Q 048012 299 RVAVTTCAWDCDGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHSDDITALKFSSDGRILLSRSFDGSLKV-WDLRKM 377 (616)
Q Consensus 299 ~~~v~~~~~sp~g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~v~l-wd~~~~ 377 (616)
...+.+++..+.|+.++++-.+|+|.+.|.++| ..+..+....-....++ .|..+.|+....|.++.+ |..-.+
T Consensus 876 na~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G----~vINswrpmecdllqla-apsdq~L~~saldHslaVnWhaldg 950 (1034)
T KOG4190|consen 876 NALTRAIAVADKGNKLAAALSNGCIAILDARNG----KVINSWRPMECDLLQLA-APSDQALAQSALDHSLAVNWHALDG 950 (1034)
T ss_pred chheeEEEeccCcchhhHHhcCCcEEEEecCCC----ceeccCCcccchhhhhc-CchhHHHHhhcccceeEeeehhcCC
Confidence 346889999999999999999999999999988 56666666655555555 356677888888999888 865543
Q ss_pred CCcceEecCCCCCCcceeEEE-CCCCCEEEEeeccccccCCCceEEEEeCC-CC---ceEEEEec-CCCCCeEEEEEcCC
Q 048012 378 KEPLKVFEDLPNNYAQTNVAF-SPDEQLFLTGTSVERESTTGGLLCFYDRE-KL---ELVSRVGI-SPACSVVQCAWHPK 451 (616)
Q Consensus 378 ~~~~~~~~~~~~~~~v~~v~f-spdg~~l~~gs~~~~~~~~dg~i~iwd~~-~~---~~~~~~~~-~~~~~v~~~~~~p~ 451 (616)
.. .+...+...+ ..| -.-|.-|++.. .++.+.+|--. .. ..+.++.- .-.+..++++--|-
T Consensus 951 im---h~q~kpppep---ahflqsvgpSLV~a~-------~Gn~lgVYad~a~~ha~stitKiR~d~f~G~lTala~LPL 1017 (1034)
T KOG4190|consen 951 IM---HLQDKPPPEP---AHFLQSVGPSLVTAQ-------NGNILGVYADSAELHAESTITKIRPDEFPGTLTALAPLPL 1017 (1034)
T ss_pred ee---eeccCCCCcc---hhhhhccCceeEEec-------cCcEEEEEecchhhhhhhhhccccccccCCccceeeeccc
Confidence 21 1111111110 111 12366677776 66777777521 11 11111211 11245677777776
Q ss_pred CCcEEEEec
Q 048012 452 LNQIFATAG 460 (616)
Q Consensus 452 ~~~l~~~~~ 460 (616)
...+++|..
T Consensus 1018 N~afLaGne 1026 (1034)
T KOG4190|consen 1018 NCAFLAGNE 1026 (1034)
T ss_pred cchhhccCC
Confidence 666666654
No 282
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.00 E-value=3.6e-08 Score=91.81 Aligned_cols=248 Identities=17% Similarity=0.278 Sum_probs=156.9
Q ss_pred CCceEEEEecCCCCeEEEEeCCCeEEEEECCCCeeeeEeeCceeEeecccCCCcc------------cceEEEEEcCC-C
Q 048012 196 GHQVRNLSWSPTSDRFLCVTGSAQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHI------------CGLTCGEWHPK-T 262 (616)
Q Consensus 196 ~~~v~~l~~sp~g~~l~~~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~------------~~v~~~~~~p~-~ 262 (616)
...|+++.|...|.+|++|...|.|.+|......-.+. +.+..+.+|. ..|..+.|..+ +
T Consensus 26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~cey-------kf~teFQshe~EFDYLkSleieEKin~I~w~~~t~ 98 (460)
T COG5170 26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEY-------KFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTG 98 (460)
T ss_pred cceeeEEEeccccceEeecCCCceEEEeecccccccch-------hhhhhhcccccchhhhhhccHHHHhhheeeecCCC
Confidence 44599999999999999998889999998764331111 0111122332 34677887654 4
Q ss_pred CCEEEEEeCCCCEEEEECCCccc----------------------cc-----------eEEe--e--eccCCCCccEEEE
Q 048012 263 KETILTSSEDGSLRIWDVNEFKS----------------------QK-----------QVIK--P--KLARPGRVAVTTC 305 (616)
Q Consensus 263 ~~~l~s~s~Dg~v~iwd~~~~~~----------------------~~-----------~~~~--~--~~~~~~~~~v~~~ 305 (616)
...++..+.|.+|++|-+..... .. .++. + .....|...|.++
T Consensus 99 r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSi 178 (460)
T COG5170 99 RNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSI 178 (460)
T ss_pred cceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeee
Confidence 45788888999999999864310 00 0110 0 0123455678899
Q ss_pred EECCCCCeEEEEeCCCcEEEEeCCCCCCCCCceeeecCCC-----CCeEEEEEcCC-CCeEEEEecCCcEEEEeCCCCCC
Q 048012 306 AWDCDGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHS-----DDITALKFSSD-GRILLSRSFDGSLKVWDLRKMKE 379 (616)
Q Consensus 306 ~~sp~g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~h~-----~~V~~l~~spd-g~~l~s~s~Dg~v~lwd~~~~~~ 379 (616)
.|+.+...++++. |=.|.+|++.-..... .+.-.+.|. .-|++..|+|. .+++...+..|.|+|-|+|....
T Consensus 179 S~NsD~et~lSaD-dLrINLWnl~i~D~sF-nIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~al 256 (460)
T COG5170 179 SFNSDKETLLSAD-DLRINLWNLEIIDGSF-NIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSAL 256 (460)
T ss_pred eecCchheeeecc-ceeeeeccccccCCce-EEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhh
Confidence 9999888887764 7789999987542121 222334454 34889999994 56677778899999999984321
Q ss_pred c---ceEec----CCC------CCCcceeEEECCCCCEEEEeeccccccCCCceEEEEeCCCC-ceEEEEecCC------
Q 048012 380 P---LKVFE----DLP------NNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREKL-ELVSRVGISP------ 439 (616)
Q Consensus 380 ~---~~~~~----~~~------~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~~-~~~~~~~~~~------ 439 (616)
+ .+.+. ... -...|..+.|+++|+||++-. =-+|+|||+... .++.++.+..
T Consensus 257 cdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRd--------yltvkiwDvnm~k~pikTi~~h~~l~~~l 328 (460)
T COG5170 257 CDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRD--------YLTVKIWDVNMAKNPIKTIPMHCDLMDEL 328 (460)
T ss_pred ccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEec--------cceEEEEecccccCCceeechHHHHHHHH
Confidence 1 11111 111 113478899999999999875 478999998754 4566654311
Q ss_pred -----CCCe---EEEEEcCCCCcEEEEec
Q 048012 440 -----ACSV---VQCAWHPKLNQIFATAG 460 (616)
Q Consensus 440 -----~~~v---~~~~~~p~~~~l~~~~~ 460 (616)
...| ..|.|+-+...+++|+-
T Consensus 329 ~d~YEnDaifdkFeisfSgd~~~v~sgsy 357 (460)
T COG5170 329 NDVYENDAIFDKFEISFSGDDKHVLSGSY 357 (460)
T ss_pred HhhhhccceeeeEEEEecCCccccccccc
Confidence 1112 23566666666666654
No 283
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.00 E-value=4.1e-07 Score=94.60 Aligned_cols=200 Identities=12% Similarity=0.032 Sum_probs=121.9
Q ss_pred ceEEEEEcCCCCCEEEEEeC---CCCEEEEECCCccccceEEeeeccCCCCccEEEEEECCCCCeEEEEe-CC--CcEEE
Q 048012 252 GLTCGEWHPKTKETILTSSE---DGSLRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWDCDGKCIAGGI-GD--GSIQV 325 (616)
Q Consensus 252 ~v~~~~~~p~~~~~l~s~s~---Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~g~-~d--g~I~i 325 (616)
.+....|+|++..+++..+. +..|.++|+.+++... +.. .........|+|||+.|+... .+ ..|++
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~-lt~------~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~ 261 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEK-IAS------SQGMLVVSDVSKDGSKLLLTMAPKGQPDIYL 261 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEE-Eec------CCCcEEeeEECCCCCEEEEEEccCCCcEEEE
Confidence 56788999998654554333 3568999997754322 211 111355678999998776543 33 46888
Q ss_pred EeCCCCCCCCCceeeecCCCCCeEEEEEcCCCCeEEEEec-CC--cEEEEeCCCCCCcceEecCCCCCCcceeEEECCCC
Q 048012 326 WNLKPGWGSRPDIHVEKGHSDDITALKFSSDGRILLSRSF-DG--SLKVWDLRKMKEPLKVFEDLPNNYAQTNVAFSPDE 402 (616)
Q Consensus 326 wd~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~-Dg--~v~lwd~~~~~~~~~~~~~~~~~~~v~~v~fspdg 402 (616)
+|+.++ ....+..+........|+|||+.|+..+. .+ .|.++|+..+.. .+.... .. ....|||||
T Consensus 262 ~dl~~g-----~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~-~rlt~~--g~---~~~~~SPDG 330 (419)
T PRK04043 262 YDTNTK-----TLTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSV-EQVVFH--GK---NNSSVSTYK 330 (419)
T ss_pred EECCCC-----cEEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCe-EeCccC--CC---cCceECCCC
Confidence 888765 22333333333445689999998777663 23 577778875432 222211 11 135899999
Q ss_pred CEEEEeeccccccC--CCceEEEEeCCCCceEEEEecCCCCCeEEEEEcCCCCcEEEEeccCCCCceEEEecccC
Q 048012 403 QLFLTGTSVEREST--TGGLLCFYDREKLELVSRVGISPACSVVQCAWHPKLNQIFATAGDKSQGGTHILYDPRL 475 (616)
Q Consensus 403 ~~l~~gs~~~~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~~~~~~~v~~~~~ 475 (616)
++|+.......... ....|.+.|+.+++. +.+.. ........|+|++..|+..... ++...++-+..
T Consensus 331 ~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~-~~LT~--~~~~~~p~~SPDG~~I~f~~~~---~~~~~L~~~~l 399 (419)
T PRK04043 331 NYIVYSSRETNNEFGKNTFNLYLISTNSDYI-RRLTA--NGVNQFPRFSSDGGSIMFIKYL---GNQSALGIIRL 399 (419)
T ss_pred CEEEEEEcCCCcccCCCCcEEEEEECCCCCe-EECCC--CCCcCCeEECCCCCEEEEEEcc---CCcEEEEEEec
Confidence 99988763211000 114789999988864 33332 2233458899999988888764 44555665554
No 284
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.97 E-value=1.8e-09 Score=101.85 Aligned_cols=167 Identities=14% Similarity=0.164 Sum_probs=124.0
Q ss_pred EEcCCCCCEEEEEeCCCCEEEEECCCccccceEEeeeccCCCCccEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCCCCC
Q 048012 257 EWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWDCDGKCIAGGIGDGSIQVWNLKPGWGSRP 336 (616)
Q Consensus 257 ~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~g~~dg~I~iwd~~~~~~~~~ 336 (616)
+|+-+..-+-++.+.+..|-+-|+.++..+. +. ....|.++.|.-.+++++.|+.+|.|..+|++....-..
T Consensus 218 awSlni~gyhfs~G~sqqv~L~nvetg~~qs-f~-------sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~ 289 (425)
T KOG2695|consen 218 AWSLNIMGYHFSVGLSQQVLLTNVETGHQQS-FQ-------SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNG 289 (425)
T ss_pred hhhhccceeeecccccceeEEEEeecccccc-cc-------cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCC
Confidence 4543322233566677788899988764332 11 222678888988899999999999999999987521122
Q ss_pred ceeeecCCCCCeEEEEEcC-CCCeEEEEecCCcEEEEeCCCCCC--cceEecCCCCCCcceeEEECCCCCEEEEeecccc
Q 048012 337 DIHVEKGHSDDITALKFSS-DGRILLSRSFDGSLKVWDLRKMKE--PLKVFEDLPNNYAQTNVAFSPDEQLFLTGTSVER 413 (616)
Q Consensus 337 ~~~~~~~h~~~V~~l~~sp-dg~~l~s~s~Dg~v~lwd~~~~~~--~~~~~~~~~~~~~v~~v~fspdg~~l~~gs~~~~ 413 (616)
......-|.+.|+++..-. ++++|++.+++|+|++||+|..+. -+..+.+|.+.....-+-..+....|++++
T Consensus 290 ~~a~rlyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~G---- 365 (425)
T KOG2695|consen 290 WCAQRLYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVG---- 365 (425)
T ss_pred cceEEEEcCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEcc----
Confidence 2334445888999988776 788999999999999999996432 366777776665555566677788888888
Q ss_pred ccCCCceEEEEeCCCCceEEEEecC
Q 048012 414 ESTTGGLLCFYDREKLELVSRVGIS 438 (616)
Q Consensus 414 ~~~~dg~i~iwd~~~~~~~~~~~~~ 438 (616)
.|...+||.++.+.++.++.++
T Consensus 366 ---dDcytRiWsl~~ghLl~tipf~ 387 (425)
T KOG2695|consen 366 ---DDCYTRIWSLDSGHLLCTIPFP 387 (425)
T ss_pred ---CeeEEEEEecccCceeeccCCC
Confidence 8999999999999999999764
No 285
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=98.92 E-value=1.2e-07 Score=89.78 Aligned_cols=233 Identities=15% Similarity=0.239 Sum_probs=162.6
Q ss_pred cccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEEEECCCccccceEEeeeccCCCCccEEEEEECCCCCeEEEEeCCCc
Q 048012 243 LKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWDCDGKCIAGGIGDGS 322 (616)
Q Consensus 243 ~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~g~~dg~ 322 (616)
++.++||...|+....-|.. .-+++.+.|.++|||--++......-+. +.-..+++++.+.+....|++|-..|+
T Consensus 17 l~~~eG~~d~vn~~~l~~~e-~gv~~~s~drtvrv~lkrds~q~wpsI~----~~mP~~~~~~~y~~e~~~L~vg~~ngt 91 (404)
T KOG1409|consen 17 LSKIEGSQDDVNAAILIPKE-EGVISVSEDRTVRVWLKRDSGQYWPSIY----HYMPSPCSAMEYVSESRRLYVGQDNGT 91 (404)
T ss_pred hhhhcCchhhhhhheeccCC-CCeEEccccceeeeEEeccccccCchhh----hhCCCCceEeeeeccceEEEEEEecce
Confidence 55678999999998888865 5799999999999996544322221111 122237899999999999999999999
Q ss_pred EEEEeCCCCCCCCCceeeecCCCCCeEEEEEcCCCCeEEEEecCCcEEEEeCCCCCCcceEecCCCCCCcceeEEECCCC
Q 048012 323 IQVWNLKPGWGSRPDIHVEKGHSDDITALKFSSDGRILLSRSFDGSLKVWDLRKMKEPLKVFEDLPNNYAQTNVAFSPDE 402 (616)
Q Consensus 323 I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~v~~v~fspdg 402 (616)
+.-+.+...+...........|...|..+-|+-...++++.+.|..+. |.....+..+-.+.. ....+.+.|.-.
T Consensus 92 vtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~-~hc~e~~~~lg~Y~~---~~~~t~~~~d~~- 166 (404)
T KOG1409|consen 92 VTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFA-WHCTESGNRLGGYNF---ETPASALQFDAL- 166 (404)
T ss_pred EEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceE-EEeeccCCcccceEe---eccCCCCceeeE-
Confidence 999987665444456677789999999999999999999999887764 443333322211110 011122222211
Q ss_pred CEEEEeeccccccCCCceEEEEe--CCCCceEEEEecCCCCCeEEEEEcCCCCcEEEEeccCCCCceEEEecccCCC---
Q 048012 403 QLFLTGTSVERESTTGGLLCFYD--REKLELVSRVGISPACSVVQCAWHPKLNQIFATAGDKSQGGTHILYDPRLSE--- 477 (616)
Q Consensus 403 ~~l~~gs~~~~~~~~dg~i~iwd--~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~~~~~~~v~~~~~s~--- 477 (616)
+...|. ..|.|.+.. .....++.++. .|.+.+.++.|.+....|+++.. ++.+.+|++-..+
T Consensus 167 -~~fvGd-------~~gqvt~lr~~~~~~~~i~~~~-~h~~~~~~l~Wd~~~~~LfSg~~----d~~vi~wdigg~~g~~ 233 (404)
T KOG1409|consen 167 -YAFVGD-------HSGQITMLKLEQNGCQLITTFN-GHTGEVTCLKWDPGQRLLFSGAS----DHSVIMWDIGGRKGTA 233 (404)
T ss_pred -EEEecc-------cccceEEEEEeecCCceEEEEc-CcccceEEEEEcCCCcEEEeccc----cCceEEEeccCCccee
Confidence 444554 455555544 34556666665 46788999999999999998887 7888889854322
Q ss_pred -----------------CCcEEEEecCCcceecccccC
Q 048012 478 -----------------RGALVCVARAPRKKSVDDFEV 498 (616)
Q Consensus 478 -----------------~g~~l~s~~~d~~~~~wd~~~ 498 (616)
--+.|.+++.|+.+.+|++..
T Consensus 234 ~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~ 271 (404)
T KOG1409|consen 234 YELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNV 271 (404)
T ss_pred eeeccchhhhhhhhhhhhheeeeeccCCCeEEEEeccc
Confidence 245778899999999999854
No 286
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.91 E-value=5.5e-06 Score=93.99 Aligned_cols=287 Identities=15% Similarity=0.238 Sum_probs=171.5
Q ss_pred CcccEEEEEECCCCCEEEEEEc---C---CcEEEEeCCCCccccccceecCCCCCCceEEEEecCCCCeEEEEeC---CC
Q 048012 148 HTKIVSALAVDHSGSRVLSGSY---D---YTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSDRFLCVTG---SA 218 (616)
Q Consensus 148 H~~~V~~v~~sp~g~~lasgs~---D---g~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~s~---d~ 218 (616)
+...-..|+|-.||.++|+.+. . ..||||+-++. +......-.+--.+++|-|.|++|++... ..
T Consensus 208 ~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~ReG~------L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~ 281 (928)
T PF04762_consen 208 WDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSREGE------LQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRH 281 (928)
T ss_pred cCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCCce------EEeccccCCCccCCccCCCCCCEEEEEEEcCCCc
Confidence 5566778999999999998875 2 57999997642 22222222223557899999998887764 46
Q ss_pred eEEEEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEEEECCCccccceEEeeeccCCC
Q 048012 219 QAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPG 298 (616)
Q Consensus 219 ~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~ 298 (616)
.|.+|..+|....+|. ++ .......|..+.|++++ .+|+..-.|. |.+|-..+..- +.+.......
T Consensus 282 ~VvFfErNGLrhgeF~--------l~-~~~~~~~v~~l~Wn~ds-~iLAv~~~~~-vqLWt~~NYHW---YLKqei~~~~ 347 (928)
T PF04762_consen 282 DVVFFERNGLRHGEFT--------LR-FDPEEEKVIELAWNSDS-EILAVWLEDR-VQLWTRSNYHW---YLKQEIRFSS 347 (928)
T ss_pred EEEEEecCCcEeeeEe--------cC-CCCCCceeeEEEECCCC-CEEEEEecCC-ceEEEeeCCEE---EEEEEEEccC
Confidence 8889999988876662 11 13455678999999987 5777766555 99998876432 1211111111
Q ss_pred CccEEEEEECCC-CCeEEEEeCCCcEEEEeC----CCCCC--------------------------CCCce-eeecCCCC
Q 048012 299 RVAVTTCAWDCD-GKCIAGGIGDGSIQVWNL----KPGWG--------------------------SRPDI-HVEKGHSD 346 (616)
Q Consensus 299 ~~~v~~~~~sp~-g~~l~~g~~dg~I~iwd~----~~~~~--------------------------~~~~~-~~~~~h~~ 346 (616)
...+..+.|+|. ...|.+.+.+|.+..+++ ..+.. ..+++ ...-....
T Consensus 348 ~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~ 427 (928)
T PF04762_consen 348 SESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPS 427 (928)
T ss_pred CCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCC
Confidence 123455889984 445666666666655442 11100 00011 01112346
Q ss_pred CeEEEEEcCCCCeEEEEecCCcEEEEeCCCCCCc-----c--eEec--------CCCCCCcceeEEECCCCCEEEEeecc
Q 048012 347 DITALKFSSDGRILLSRSFDGSLKVWDLRKMKEP-----L--KVFE--------DLPNNYAQTNVAFSPDEQLFLTGTSV 411 (616)
Q Consensus 347 ~V~~l~~spdg~~l~s~s~Dg~v~lwd~~~~~~~-----~--~~~~--------~~~~~~~v~~v~fspdg~~l~~gs~~ 411 (616)
.|.+++|++++..+++-..||+|.+|........ . ..+. .......+..++|..+..+++.....
T Consensus 428 ~v~~vaf~~~~~~~avl~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 507 (928)
T PF04762_consen 428 PVNDVAFSPSNSRFAVLTSDGSLSIYEWDLKNMWSVKPPKLLSSISLDSMDISDSELPLGSLRQLAWLNDDTLLVLSDSD 507 (928)
T ss_pred CcEEEEEeCCCCeEEEEECCCCEEEEEecCCCcccccCcchhhhcccccccccccccccccEEEEEEeCCCEEEEEEecC
Confidence 7999999999988999999999999985432110 0 0110 01123347888998888777776620
Q ss_pred ccccCCCceEEEEeCCCCc---eEEEEecCCCCCeEEEEEcCCCCcEEEEe
Q 048012 412 ERESTTGGLLCFYDREKLE---LVSRVGISPACSVVQCAWHPKLNQIFATA 459 (616)
Q Consensus 412 ~~~~~~dg~i~iwd~~~~~---~~~~~~~~~~~~v~~~~~~p~~~~l~~~~ 459 (616)
.....|.+++....+ .+.... .....+..+...+....++.-.
T Consensus 508 ----~~~~~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~q~ 553 (928)
T PF04762_consen 508 ----SNQSKIVLVDIDDSENSASVESST-EVDGVVLIISSSPDSGSLYIQT 553 (928)
T ss_pred ----cccceEEEEEeccCCCceeEEEEe-ccCceEEEEeeCCCCcEEEEEE
Confidence 023678888874332 222221 2234455555555544233333
No 287
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.90 E-value=1.4e-09 Score=113.73 Aligned_cols=217 Identities=14% Similarity=0.216 Sum_probs=154.0
Q ss_pred CCCceEEEEecCCCCeEEEEeCCCeEEEEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCC-
Q 048012 195 EGHQVRNLSWSPTSDRFLCVTGSAQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDG- 273 (616)
Q Consensus 195 ~~~~v~~l~~sp~g~~l~~~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg- 273 (616)
+....+|++|+-..++|++|+..|.|++|++.++.. .....+|.+.|+-+.-+-++..+|.+++...
T Consensus 1100 ~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~------------e~s~ncH~SavT~vePs~dgs~~Ltsss~S~P 1167 (1516)
T KOG1832|consen 1100 ETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSM------------EESVNCHQSAVTLVEPSVDGSTQLTSSSSSSP 1167 (1516)
T ss_pred cccceeeEEeecCCceEEeeeccceEEEEEccCccc------------cccccccccccccccccCCcceeeeeccccCc
Confidence 445689999999999999999999999999987764 3346899999999999988865555554444
Q ss_pred CEEEEECCCccccceEEeeeccCCCCccEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCCCCCceeeec---CCCCCeEE
Q 048012 274 SLRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWDCDGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEK---GHSDDITA 350 (616)
Q Consensus 274 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~---~h~~~V~~ 350 (616)
-..+|++........ ... .-.++.|+..-..-+.|+.-....|||+.++. ++...+. +....-++
T Consensus 1168 lsaLW~~~s~~~~~H-----sf~----ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~---~l~tylt~~~~~~y~~n~ 1235 (1516)
T KOG1832|consen 1168 LSALWDASSTGGPRH-----SFD----EDKAVKFSNSLQFRALGTEADDALLYDVQTCS---PLQTYLTDTVTSSYSNNL 1235 (1516)
T ss_pred hHHHhccccccCccc-----ccc----ccceeehhhhHHHHHhcccccceEEEecccCc---HHHHhcCcchhhhhhccc
Confidence 467999865211111 001 34677888776666777777789999999863 2222122 22223478
Q ss_pred EEEcCCCCeEEEEecCCcEEEEeCCCCCCcceEecCCCCCCcceeEEECCCCCEEEEeeccccccCCCceEEEEeCCCCc
Q 048012 351 LKFSSDGRILLSRSFDGSLKVWDLRKMKEPLKVFEDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREKLE 430 (616)
Q Consensus 351 l~~spdg~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~~~ 430 (616)
+.|+|+..+++- || .+||++.. ..++.|..... -..-.|+|.|.-++.-+ .|||+++++
T Consensus 1236 a~FsP~D~LIln---dG--vLWDvR~~-~aIh~FD~ft~---~~~G~FHP~g~eVIINS------------EIwD~RTF~ 1294 (1516)
T KOG1832|consen 1236 AHFSPCDTLILN---DG--VLWDVRIP-EAIHRFDQFTD---YGGGGFHPSGNEVIINS------------EIWDMRTFK 1294 (1516)
T ss_pred cccCCCcceEee---Cc--eeeeeccH-HHHhhhhhhee---cccccccCCCceEEeec------------hhhhhHHHH
Confidence 899999888764 55 48999975 44555544331 22346999999999877 399999999
Q ss_pred eEEEEecCCCCCeEEEEEcCCCCcEEEEe
Q 048012 431 LVSRVGISPACSVVQCAWHPKLNQIFATA 459 (616)
Q Consensus 431 ~~~~~~~~~~~~v~~~~~~p~~~~l~~~~ 459 (616)
+++.+.. -.-..+.|+..|+.+++.-
T Consensus 1295 lLh~VP~---Ldqc~VtFNstG~VmYa~~ 1320 (1516)
T KOG1832|consen 1295 LLHSVPS---LDQCAVTFNSTGDVMYAML 1320 (1516)
T ss_pred HHhcCcc---ccceEEEeccCccchhhhh
Confidence 9988743 2246788999988887765
No 288
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.89 E-value=5.2e-07 Score=82.68 Aligned_cols=227 Identities=8% Similarity=-0.010 Sum_probs=140.8
Q ss_pred CCEEEEEEcCCcEEEEeCCCCccccccceecCCCCCCceEEEEecCC-CCeEEEEeCCCeEEEEECCCCeeeeEeeCcee
Q 048012 161 GSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPT-SDRFLCVTGSAQAKIYDRDGLTLGEFVKGDMY 239 (616)
Q Consensus 161 g~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~-g~~l~~~s~d~~v~vwd~~~~~~~~~~~~~~~ 239 (616)
..+||.|+.-|...+|...+....+..... +...|.-+.=..+ .-.+..++.|.+++++++++....
T Consensus 84 c~~la~gG~~g~fd~~~~~tn~~h~~~cd~----snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~-------- 151 (344)
T KOG4532|consen 84 CVTLADGGASGQFDLFACNTNDGHLYQCDV----SNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNK-------- 151 (344)
T ss_pred ccEEEeccccceeeeecccCcccceeeecc----cccchhhhhhhcccccceeeccCCcceeEEEEecCccc--------
Confidence 358999999999999998764332221111 1111111111111 224677889999999998865431
Q ss_pred EeecccCCCcccc--eEEEEEcCCCCCEEEEEeCCCCEEEEECCCccccceEEeeeccCCCCccEEEEEECCCCCeEEEE
Q 048012 240 IRDLKNTKGHICG--LTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWDCDGKCIAGG 317 (616)
Q Consensus 240 ~~~~~~~~~h~~~--v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~g 317 (616)
...|... +..+.+++++ .++++.+....|.+|.+........-+.... ....-.+..|+.....+|++
T Consensus 152 ------~~~h~~~~~~ns~~~snd~-~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~---t~D~gF~~S~s~~~~~FAv~ 221 (344)
T KOG4532|consen 152 ------FAVHNQNLTQNSLHYSNDP-SWGSSVGDSRRVFRYAIDDESEYIENIYEAP---TSDHGFYNSFSENDLQFAVV 221 (344)
T ss_pred ------ceeeccccceeeeEEcCCC-ceEEEecCCCcceEEEeCCccceeeeeEecc---cCCCceeeeeccCcceEEEE
Confidence 1233333 7889999987 5888888889999999876432211111111 11134677899999999999
Q ss_pred eCCCcEEEEeCCCCCC-CCCceeeecCCCCCeEEEEEcCCCC--eEEEEecCCcEEEEeCCCCCCcceEecCC----CC-
Q 048012 318 IGDGSIQVWNLKPGWG-SRPDIHVEKGHSDDITALKFSSDGR--ILLSRSFDGSLKVWDLRKMKEPLKVFEDL----PN- 389 (616)
Q Consensus 318 ~~dg~I~iwd~~~~~~-~~~~~~~~~~h~~~V~~l~~spdg~--~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~----~~- 389 (616)
..||++.|||++.... ..........|.+.|..+.|++.|. +|+..-.=+.+.+.|+|+......+.-.. .+
T Consensus 222 ~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~ 301 (344)
T KOG4532|consen 222 FQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHN 301 (344)
T ss_pred ecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCcccccccc
Confidence 9999999999997421 1122234556899999999998653 45444445789999999876543332111 01
Q ss_pred CCcceeEEECCCCCEEEEee
Q 048012 390 NYAQTNVAFSPDEQLFLTGT 409 (616)
Q Consensus 390 ~~~v~~v~fspdg~~l~~gs 409 (616)
...+....|+.++.-+.+.+
T Consensus 302 tq~ifgt~f~~~n~s~~v~~ 321 (344)
T KOG4532|consen 302 TQHIFGTNFNNENESNDVKN 321 (344)
T ss_pred ccccccccccCCCccccccc
Confidence 11245556666555554443
No 289
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.89 E-value=4.4e-08 Score=95.73 Aligned_cols=263 Identities=15% Similarity=0.160 Sum_probs=172.5
Q ss_pred CCcccEEEEEECCCCCEEEEEEcCCcEEEEeCCCCccccccceecCCCCCCceEEEEecCCCCeEEEEeC-CCeEEEEEC
Q 048012 147 GHTKIVSALAVDHSGSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSDRFLCVTG-SAQAKIYDR 225 (616)
Q Consensus 147 ~H~~~V~~v~~sp~g~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~s~-d~~v~vwd~ 225 (616)
.|...|+.+... -..++.+++.||.++.|.-... ....+......|...|.+++.+-++..+.+++. |..++++|+
T Consensus 7 mhrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~i--sGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDv 83 (558)
T KOG0882|consen 7 MHRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRI--SGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDV 83 (558)
T ss_pred cccceeeeEeee-hhheEEeeecchhhhhcCCCCc--cceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEe
Confidence 588888887654 4579999999999999975431 111222233345556888999999998888777 999999998
Q ss_pred CCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCC--CEEEEEeCCCCEEEEECCCccccceEEeeeccCCCCccEE
Q 048012 226 DGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTK--ETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPGRVAVT 303 (616)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~--~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~ 303 (616)
....+....+ +-.+.+ .+. +..++... .+.++.-.++.+.|+|-....+...... .-|..+|.
T Consensus 84 En~DminmiK-------L~~lPg---~a~-wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fk----klH~sPV~ 148 (558)
T KOG0882|consen 84 ENFDMINMIK-------LVDLPG---FAE-WVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFK----KLHFSPVK 148 (558)
T ss_pred eccchhhhcc-------cccCCC---ceE-EecCCCCeeeeEEeecccCCCcEEECCcCCcCccceec----ccccCceE
Confidence 8654321110 111111 111 11222111 1333344578899999765443333322 23455899
Q ss_pred EEEECCCCCeEEEEeCCCcEEEEeCCCCCC-CCCce----------eeecCCCCCeEEEEEcCCCCeEEEEecCCcEEEE
Q 048012 304 TCAWDCDGKCIAGGIGDGSIQVWNLKPGWG-SRPDI----------HVEKGHSDDITALKFSSDGRILLSRSFDGSLKVW 372 (616)
Q Consensus 304 ~~~~sp~g~~l~~g~~dg~I~iwd~~~~~~-~~~~~----------~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~v~lw 372 (616)
++.+++-+..+++....|.|.-|....... .+..+ ..+........++.|+|+|..+.+-+.|..|+++
T Consensus 149 ~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F 228 (558)
T KOG0882|consen 149 KIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGF 228 (558)
T ss_pred EEEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEE
Confidence 999999999999999999999998873110 01111 1112233557899999999999999999999999
Q ss_pred eCCCCCCcceEecCCC-------------------------------CCCcceeEEECCCCCEEEEeeccccccCCCceE
Q 048012 373 DLRKMKEPLKVFEDLP-------------------------------NNYAQTNVAFSPDEQLFLTGTSVERESTTGGLL 421 (616)
Q Consensus 373 d~~~~~~~~~~~~~~~-------------------------------~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i 421 (616)
++++++. ++.+.... ....-+.+.|...+++|+.|+ .=| |
T Consensus 229 ~~KtGkl-vqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t-------~~g-i 299 (558)
T KOG0882|consen 229 VFKTGKL-VQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGT-------ILG-I 299 (558)
T ss_pred Eeccchh-hhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeec-------cee-E
Confidence 9986542 22221110 122346789999999999997 333 8
Q ss_pred EEEeCCCCceEEEEe
Q 048012 422 CFYDREKLELVSRVG 436 (616)
Q Consensus 422 ~iwd~~~~~~~~~~~ 436 (616)
++.++.++++++.+.
T Consensus 300 kvin~~tn~v~ri~g 314 (558)
T KOG0882|consen 300 KVINLDTNTVVRILG 314 (558)
T ss_pred EEEEeecCeEEEEec
Confidence 899999888887764
No 290
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.85 E-value=5.5e-08 Score=94.07 Aligned_cols=163 Identities=15% Similarity=0.086 Sum_probs=101.5
Q ss_pred eEEEEecCCCCeEEEEeCCCeEEEEECCCCee-eeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEE
Q 048012 199 VRNLSWSPTSDRFLCVTGSAQAKIYDRDGLTL-GEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRI 277 (616)
Q Consensus 199 v~~l~~sp~g~~l~~~s~d~~v~vwd~~~~~~-~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~i 277 (616)
+..+..++.+++|+++..+....++++..... ..+ .+..........+..+...... .+....+....+.+
T Consensus 65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl-------~~~~~v~~~~~ai~~~~~~~sv-~v~dkagD~~~~di 136 (390)
T KOG3914|consen 65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKL-------LDVSCVPKRPTAISFIREDTSV-LVADKAGDVYSFDI 136 (390)
T ss_pred ccccccCCCceEEEEEeCCCceEEEEEecCCCccee-------eeEeecccCcceeeeeeccceE-EEEeecCCceeeee
Confidence 34455677788888888888877777654331 111 1111111122223333322211 11112233344555
Q ss_pred EECCCccccceEEeeeccCCCCccEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCCCCCceeeecCCCCCeEEEEEcCCC
Q 048012 278 WDVNEFKSQKQVIKPKLARPGRVAVTTCAWDCDGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHSDDITALKFSSDG 357 (616)
Q Consensus 278 wd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~spdg 357 (616)
|....+.+. ...+|-..++.++|+||+++|+++..|..|++-..... ...-....+|..-|..++.-+ +
T Consensus 137 ~s~~~~~~~-------~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~---f~IesfclGH~eFVS~isl~~-~ 205 (390)
T KOG3914|consen 137 LSADSGRCE-------PILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPAT---FVIESFCLGHKEFVSTISLTD-N 205 (390)
T ss_pred ecccccCcc-------hhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcc---cchhhhccccHhheeeeeecc-C
Confidence 554432211 12356668999999999999999999999999877653 123334568999999999865 4
Q ss_pred CeEEEEecCCcEEEEeCCCCCCc
Q 048012 358 RILLSRSFDGSLKVWDLRKMKEP 380 (616)
Q Consensus 358 ~~l~s~s~Dg~v~lwd~~~~~~~ 380 (616)
..|+++|.|++|++||+++++.+
T Consensus 206 ~~LlS~sGD~tlr~Wd~~sgk~L 228 (390)
T KOG3914|consen 206 YLLLSGSGDKTLRLWDITSGKLL 228 (390)
T ss_pred ceeeecCCCCcEEEEecccCCcc
Confidence 56999999999999999987653
No 291
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.84 E-value=3.6e-09 Score=105.34 Aligned_cols=179 Identities=17% Similarity=0.248 Sum_probs=122.4
Q ss_pred cccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEEEECCCcc-ccceEEeeeccCCCCccEEEEEECCCCCeEEEEeCCC
Q 048012 243 LKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFK-SQKQVIKPKLARPGRVAVTTCAWDCDGKCIAGGIGDG 321 (616)
Q Consensus 243 ~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~-~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~g~~dg 321 (616)
+.++.||...|..+.--.+ .+-+++++.|.+|++|.++... .............|..+|.++.|-.+-++++++ ||
T Consensus 728 L~nf~GH~~~iRai~AidN-ENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~ 804 (1034)
T KOG4190|consen 728 LCNFTGHQEKIRAIAAIDN-ENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DG 804 (1034)
T ss_pred eecccCcHHHhHHHHhccc-ccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cC
Confidence 5567899999888765543 3689999999999999987532 222222222334666789999999888888765 89
Q ss_pred cEEEEeCCCCCCCCCcee-eec-CCCCCeEEEEEcC--CCCeEEEE-ecCCcEEEEeCCCCCC--cceEecCCCCCCcce
Q 048012 322 SIQVWNLKPGWGSRPDIH-VEK-GHSDDITALKFSS--DGRILLSR-SFDGSLKVWDLRKMKE--PLKVFEDLPNNYAQT 394 (616)
Q Consensus 322 ~I~iwd~~~~~~~~~~~~-~~~-~h~~~V~~l~~sp--dg~~l~s~-s~Dg~v~lwd~~~~~~--~~~~~~~~~~~~~v~ 394 (616)
-|++||.--+ ..+. ... ...+.+..|..-+ +..+++.+ +...+|+++|.+...- .+++......+..++
T Consensus 805 giHlWDPFig----r~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R 880 (1034)
T KOG4190|consen 805 GIHLWDPFIG----RLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTR 880 (1034)
T ss_pred cceeeccccc----chhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchhee
Confidence 9999997544 2222 111 1122333333333 34444444 7889999999997542 223332233345588
Q ss_pred eEEECCCCCEEEEeeccccccCCCceEEEEeCCCCceEEEE
Q 048012 395 NVAFSPDEQLFLTGTSVERESTTGGLLCFYDREKLELVSRV 435 (616)
Q Consensus 395 ~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~~~~~~~~ 435 (616)
+++..+.|++++++- ..|.|.+.|.++|+.+...
T Consensus 881 ~iaVa~~GN~lAa~L-------SnGci~~LDaR~G~vINsw 914 (1034)
T KOG4190|consen 881 AIAVADKGNKLAAAL-------SNGCIAILDARNGKVINSW 914 (1034)
T ss_pred EEEeccCcchhhHHh-------cCCcEEEEecCCCceeccC
Confidence 999999999999998 7999999999999987755
No 292
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.83 E-value=2.2e-06 Score=89.26 Aligned_cols=196 Identities=13% Similarity=0.031 Sum_probs=119.7
Q ss_pred ceEEEEecCCCCe-EEEEeC---CCeEEEEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCC
Q 048012 198 QVRNLSWSPTSDR-FLCVTG---SAQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDG 273 (616)
Q Consensus 198 ~v~~l~~sp~g~~-l~~~s~---d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg 273 (616)
.+....|+|+|+. ++..+. ...|.++|+.+++...+ . ..........|+|++..++++.+.++
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~l----------t---~~~g~~~~~~~SPDG~~la~~~~~~g 255 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKI----------A---SSQGMLVVSDVSKDGSKLLLTMAPKG 255 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEE----------e---cCCCcEEeeEECCCCCEEEEEEccCC
Confidence 5788999999985 554443 35788889887664322 1 12233456789999977777766554
Q ss_pred --CEEEEECCCccccceEEeeeccCCCCccEEEEEECCCCCeEEEEeC-CC--cEEEEeCCCCCCCCCceeeecCCCCCe
Q 048012 274 --SLRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWDCDGKCIAGGIG-DG--SIQVWNLKPGWGSRPDIHVEKGHSDDI 348 (616)
Q Consensus 274 --~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~g~~-dg--~I~iwd~~~~~~~~~~~~~~~~h~~~V 348 (616)
.|.++|+..+. ...+... ........|+|||+.|+..+. .| .|+++|+.++. ...... ...
T Consensus 256 ~~~Iy~~dl~~g~-~~~LT~~------~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~----~~rlt~-~g~-- 321 (419)
T PRK04043 256 QPDIYLYDTNTKT-LTQITNY------PGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGS----VEQVVF-HGK-- 321 (419)
T ss_pred CcEEEEEECCCCc-EEEcccC------CCccCccEECCCCCEEEEEECCCCCceEEEEECCCCC----eEeCcc-CCC--
Confidence 57777876643 2222111 111234579999998777663 33 57778887652 211111 111
Q ss_pred EEEEEcCCCCeEEEEecC---------CcEEEEeCCCCCCcceEecCCCCCCcceeEEECCCCCEEEEeeccccccCCCc
Q 048012 349 TALKFSSDGRILLSRSFD---------GSLKVWDLRKMKEPLKVFEDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGG 419 (616)
Q Consensus 349 ~~l~~spdg~~l~s~s~D---------g~v~lwd~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg 419 (616)
....|+|||++|+..+.. ..|.+.|+..+. .+.+... .......|+|||++|+..+.. ....
T Consensus 322 ~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~--~~~LT~~---~~~~~p~~SPDG~~I~f~~~~----~~~~ 392 (419)
T PRK04043 322 NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDY--IRRLTAN---GVNQFPRFSSDGGSIMFIKYL----GNQS 392 (419)
T ss_pred cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCC--eEECCCC---CCcCCeEECCCCCEEEEEEcc----CCcE
Confidence 124899999998877654 257778887543 2333322 123468999999998887631 1234
Q ss_pred eEEEEeCCCC
Q 048012 420 LLCFYDREKL 429 (616)
Q Consensus 420 ~i~iwd~~~~ 429 (616)
.|.++++...
T Consensus 393 ~L~~~~l~g~ 402 (419)
T PRK04043 393 ALGIIRLNYN 402 (419)
T ss_pred EEEEEecCCC
Confidence 5777777543
No 293
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.83 E-value=4.9e-08 Score=101.33 Aligned_cols=320 Identities=15% Similarity=0.187 Sum_probs=187.4
Q ss_pred EEECCCCCEEEEEEcCCcEEEEeCCCCccccccceecCCCCCCceEEEEecCCCC--eEEEEeCCCeEEEEECCCCeeee
Q 048012 155 LAVDHSGSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSD--RFLCVTGSAQAKIYDRDGLTLGE 232 (616)
Q Consensus 155 v~~sp~g~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~--~l~~~s~d~~v~vwd~~~~~~~~ 232 (616)
++|+|.-+-++-...-.-+.|+|++-+. .....+...+.+.-+.|-|+++ .|++.-.+|.+.+|-...... +
T Consensus 236 faf~p~~rn~lfi~~prellv~dle~~~-----~l~vvpier~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~~~~-~ 309 (1062)
T KOG1912|consen 236 FAFSPHWRNILFITFPRELLVFDLEYEC-----CLAVVPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKEEPT-E 309 (1062)
T ss_pred hhcChhhhceEEEEeccceEEEcchhhc-----eeEEEEeccCCcceeEeccCCCcceEEEEecCCeEEEEEeeccCc-c
Confidence 4567765545555566778899986432 1122223444466677777755 588899999999998653211 1
Q ss_pred EeeCce--------eEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEEEECCCccccce----------------
Q 048012 233 FVKGDM--------YIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQ---------------- 288 (616)
Q Consensus 233 ~~~~~~--------~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~~---------------- 288 (616)
|.+... ....++.++ .-.......+|.....++.--.+|.+.+|.+.+++....
T Consensus 310 f~~~~~~l~~dl~~Q~~~vr~m~--~~rp~~~~~cPs~~sa~avl~s~g~~~~w~l~~~ri~~~~~s~~iel~~pf~f~~ 387 (1062)
T KOG1912|consen 310 FKKPNASLSMDLGEQVHVVRPME--EFRPVIGASCPSTPSALAVLYSSGDSTFWQLSNGRIHLDYRSSSIELVLPFDFNL 387 (1062)
T ss_pred ccccchhhccccccceEEEeech--hcccceeecCCCChhhhhhhhhcchhHHHhhhcCCcCcccccccccccccccccC
Confidence 110000 000011111 011222333454444455555577788888875432111
Q ss_pred ---------EEeeeccCCCCccEEEEEECC-----------CCC-------eEEEEeCCCcEEEEeCCCCCCCCCceeee
Q 048012 289 ---------VIKPKLARPGRVAVTTCAWDC-----------DGK-------CIAGGIGDGSIQVWNLKPGWGSRPDIHVE 341 (616)
Q Consensus 289 ---------~~~~~~~~~~~~~v~~~~~sp-----------~g~-------~l~~g~~dg~I~iwd~~~~~~~~~~~~~~ 341 (616)
++......+|....++....| .|+ ++|.|+..|+|.++|+.++ .....+
T Consensus 388 ~~~~v~k~~l~~LS~dg~h~sGs~~~~~~p~p~~t~~~~~p~~n~~~~~~pLvAvGT~sGTV~vvdvst~----~v~~~f 463 (1062)
T KOG1912|consen 388 STKLVGKTSLISLSDDGSHSSGSTCVRMRPMPELTKVENDPGGNTPAGTVPLVAVGTNSGTVDVVDVSTN----AVAASF 463 (1062)
T ss_pred ceeehhhccccchhhcCCCCCCceeeecccCcccceeecCCCCCccceeeeeEEeecCCceEEEEEecch----hhhhhh
Confidence 011111122333344433322 222 6889999999999999987 677788
Q ss_pred cCCCCCeEEEEEcCCCCeEEEEe----------cCCcEEEEeCCCCCCc-ceEecCCCCCCcceeEEECCCCCEEEEeec
Q 048012 342 KGHSDDITALKFSSDGRILLSRS----------FDGSLKVWDLRKMKEP-LKVFEDLPNNYAQTNVAFSPDEQLFLTGTS 410 (616)
Q Consensus 342 ~~h~~~V~~l~~spdg~~l~s~s----------~Dg~v~lwd~~~~~~~-~~~~~~~~~~~~v~~v~fspdg~~l~~gs~ 410 (616)
..|.+.|.++.|--... |++.+ .-+.+.|-|++++... ++.+ ..+...+|+.+..|..++||+..-
T Consensus 464 svht~~VkgleW~g~ss-lvSfsys~~n~~sg~vrN~l~vtdLrtGlsk~fR~l-~~~despI~~irvS~~~~yLai~F- 540 (1062)
T KOG1912|consen 464 SVHTSLVKGLEWLGNSS-LVSFSYSHVNSASGGVRNDLVVTDLRTGLSKRFRGL-QKPDESPIRAIRVSSSGRYLAILF- 540 (1062)
T ss_pred cccccceeeeeecccee-EEEeeeccccccccceeeeEEEEEcccccccccccC-CCCCcCcceeeeecccCceEEEEe-
Confidence 89999999999975544 33332 3345788899986432 2211 234567899999999999999998
Q ss_pred cccccCCCceEEEEeCCCCceEEEEecCCCCC-eEEEEEc-CCCCcEEEEeccC----------CCCceEEEec------
Q 048012 411 VERESTTGGLLCFYDREKLELVSRVGISPACS-VVQCAWH-PKLNQIFATAGDK----------SQGGTHILYD------ 472 (616)
Q Consensus 411 ~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~-v~~~~~~-p~~~~l~~~~~d~----------~~~~~~~v~~------ 472 (616)
.+.-+.|||+++..+++... ...+ ++.+.|+ |+-..|-...... .......++.
T Consensus 541 ------r~~plEiwd~kt~~~lr~mS--~a~P~it~leWsl~~~~si~qk~ls~q~sms~n~vv~ds~es~~~~~~~~a~ 612 (1062)
T KOG1912|consen 541 ------RREPLEIWDLKTLRMLRLMS--LALPLITVLEWSLPKHPSIKQKELSKQSSMSENLVVLDSVESRIYHITLSAL 612 (1062)
T ss_pred ------cccchHHHhhccchHHHHHh--hcCCcEEEEeecccCCCCcccccchhhhhhhhceeeeccccchheehhhhhh
Confidence 88899999998887776553 2334 8888998 4433222111100 0000111222
Q ss_pred -------------------ccCCCCCcEEEEecCCcceeccccc
Q 048012 473 -------------------PRLSERGALVCVARAPRKKSVDDFE 497 (616)
Q Consensus 473 -------------------~~~s~~g~~l~s~~~d~~~~~wd~~ 497 (616)
+++.-++..|+.|..+|.+++||+.
T Consensus 613 ~~sdgsq~~~a~esfafal~~mAwk~d~lv~GD~~GNl~~WDlg 656 (1062)
T KOG1912|consen 613 VVSDGSQVNTAWESFAFALCAMAWKDDILVVGDVEGNLVVWDLG 656 (1062)
T ss_pred hhccccchhhHHHHHHHHHHhhhccCCeeEeecccCceeEEecc
Confidence 1122367889999999999999984
No 294
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.83 E-value=1.3e-06 Score=91.01 Aligned_cols=212 Identities=14% Similarity=0.100 Sum_probs=135.4
Q ss_pred eEEecCCcccEEEEEECCC------------CCEEEEEEcCCcEEEEeCCCCccccccceecCCCCCCceEEEEecCC--
Q 048012 142 EIVLKGHTKIVSALAVDHS------------GSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPT-- 207 (616)
Q Consensus 142 ~~~l~~H~~~V~~v~~sp~------------g~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~-- 207 (616)
...+..|...|+.|.|.|- .-+||++...|.|.|||+... ........+..++..++|-+.
T Consensus 48 iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~-----s~~~~l~~~~~~~qdl~W~~~rd 122 (1062)
T KOG1912|consen 48 IQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLA-----SVINWLSHSNDSVQDLCWVPARD 122 (1062)
T ss_pred hhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhh-----hhhhhhcCCCcchhheeeeeccC
Confidence 3467789999999999863 136788888899999998754 333344456677888888663
Q ss_pred -C-CeEEEEeCCCeEEEEECCCCee-eeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEEEECCCcc
Q 048012 208 -S-DRFLCVTGSAQAKIYDRDGLTL-GEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFK 284 (616)
Q Consensus 208 -g-~~l~~~s~d~~v~vwd~~~~~~-~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~ 284 (616)
. ..|++..+...+.+|+.++++. +.. ........|+.+.|.+...|+.-+..|.|.+-+.-...
T Consensus 123 ~Srd~LlaIh~ss~lvLwntdtG~k~Wk~-------------~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~s 189 (1062)
T KOG1912|consen 123 DSRDVLLAIHGSSTLVLWNTDTGEKFWKY-------------DYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLS 189 (1062)
T ss_pred cchheeEEecCCcEEEEEEccCCceeecc-------------ccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCC
Confidence 3 5688888999999998876653 222 12223456788888776677777777777776643211
Q ss_pred ----ccceE--EeeeccC-----------CCC---------ccEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCCCCCce
Q 048012 285 ----SQKQV--IKPKLAR-----------PGR---------VAVTTCAWDCDGKCIAGGIGDGSIQVWNLKPGWGSRPDI 338 (616)
Q Consensus 285 ----~~~~~--~~~~~~~-----------~~~---------~~v~~~~~sp~g~~l~~g~~dg~I~iwd~~~~~~~~~~~ 338 (616)
..+.+ ...+... .+. .....++|+|.-+.++.......|.++|++-. .++
T Consensus 190 ep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~----~~l 265 (1062)
T KOG1912|consen 190 EPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYE----CCL 265 (1062)
T ss_pred CCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhh----cee
Confidence 11111 1110000 000 01123467887665555666788999999854 455
Q ss_pred eeecCCCCCeEEEEEcCCC--CeEEEEecCCcEEEEeCC
Q 048012 339 HVEKGHSDDITALKFSSDG--RILLSRSFDGSLKVWDLR 375 (616)
Q Consensus 339 ~~~~~h~~~V~~l~~spdg--~~l~s~s~Dg~v~lwd~~ 375 (616)
....-..+.+.-+.|-|++ ..|++...||.+.||-.+
T Consensus 266 ~vvpier~~akfv~vlP~~~rd~LfclH~nG~ltirvrk 304 (1062)
T KOG1912|consen 266 AVVPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRK 304 (1062)
T ss_pred EEEEeccCCcceeEeccCCCcceEEEEecCCeEEEEEee
Confidence 5444445556667777755 468888899999888654
No 295
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.80 E-value=3.8e-06 Score=92.16 Aligned_cols=237 Identities=14% Similarity=0.204 Sum_probs=147.4
Q ss_pred CceEEEEecCCCCeEEEEeCCCeEEEEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEE
Q 048012 197 HQVRNLSWSPTSDRFLCVTGSAQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLR 276 (616)
Q Consensus 197 ~~v~~l~~sp~g~~l~~~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~ 276 (616)
..|.++.|..+...++++...|.|.+.|..+..+.. ...-..+|.+++|+|+. .+++..+...+|.
T Consensus 69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~ei-------------vg~vd~GI~aaswS~De-e~l~liT~~~tll 134 (1265)
T KOG1920|consen 69 DEIVSVQFLADTNSICVITALGDIILVDPETLELEI-------------VGNVDNGISAASWSPDE-ELLALITGRQTLL 134 (1265)
T ss_pred cceEEEEEecccceEEEEecCCcEEEEcccccceee-------------eeeccCceEEEeecCCC-cEEEEEeCCcEEE
Confidence 469999999999999999999999999877655321 22345689999999987 5888888777776
Q ss_pred EEEC----CCcccc-------------------ceEEeee------------ccCC---CCccEEEEEECCCCCeEEEEe
Q 048012 277 IWDV----NEFKSQ-------------------KQVIKPK------------LARP---GRVAVTTCAWDCDGKCIAGGI 318 (616)
Q Consensus 277 iwd~----~~~~~~-------------------~~~~~~~------------~~~~---~~~~v~~~~~sp~g~~l~~g~ 318 (616)
+-+- -..+.. .++.... ...+ -...=++++|--||.++|+..
T Consensus 135 ~mT~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~ 214 (1265)
T KOG1920|consen 135 FMTKDFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSF 214 (1265)
T ss_pred EEeccccchhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEE
Confidence 6432 110110 0010000 0000 001224589999999998832
Q ss_pred -----CCCcEEEEeCCCCCCCCCceeeecCCCCCeEEEEEcCCCCeEEEEe---cCCcEEEEeCCCCCCcceEecCCCCC
Q 048012 319 -----GDGSIQVWNLKPGWGSRPDIHVEKGHSDDITALKFSSDGRILLSRS---FDGSLKVWDLRKMKEPLKVFEDLPNN 390 (616)
Q Consensus 319 -----~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s---~Dg~v~lwd~~~~~~~~~~~~~~~~~ 390 (616)
....|++||.. + ..-..-....+.-.+++|-|.|.++++-. .|+.|.+|.-+....---.+......
T Consensus 215 ~~~~~~~RkirV~drE-g----~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de 289 (1265)
T KOG1920|consen 215 VESETGTRKIRVYDRE-G----ALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDE 289 (1265)
T ss_pred EeccCCceeEEEeccc-c----hhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCcccc
Confidence 23789999977 3 12222222233456899999999999865 46679999855322211112111222
Q ss_pred CcceeEEECCCCCEEEEeeccccccCCCceEEEEeCCCCce--EEEEecCCCCCeEEEEEcCCCC-cEEEEe
Q 048012 391 YAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREKLEL--VSRVGISPACSVVQCAWHPKLN-QIFATA 459 (616)
Q Consensus 391 ~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~~~~--~~~~~~~~~~~v~~~~~~p~~~-~l~~~~ 459 (616)
..+..++|+.++..|++-.+.. ....|++|-+.+..- -+.+.++... -+.|||-.. .|.+.+
T Consensus 290 ~~ve~L~Wns~sdiLAv~~~~~----e~~~v~lwt~~NyhWYLKq~l~~~~~~---~~~W~p~~~~~L~v~~ 354 (1265)
T KOG1920|consen 290 KEVEELAWNSNSDILAVVTSNL----ENSLVQLWTTGNYHWYLKQELQFSQKA---LLMWDPVTEKTLHVLR 354 (1265)
T ss_pred cchheeeecCCCCceeeeeccc----ccceEEEEEecCeEEEEEEEEeccccc---cccccCCCceeEEEEe
Confidence 3389999999999999844211 455699999887643 3334443222 289999643 344443
No 296
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.76 E-value=1.6e-08 Score=106.16 Aligned_cols=223 Identities=13% Similarity=0.214 Sum_probs=152.5
Q ss_pred EEecCCcccEEEEEECCCCCEEEEEEcCCcEEEEeCCCCccccccceecCCCCCCceEEEEecCCCCeEEEEeCCC--eE
Q 048012 143 IVLKGHTKIVSALAVDHSGSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSDRFLCVTGSA--QA 220 (616)
Q Consensus 143 ~~l~~H~~~V~~v~~sp~g~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~s~d~--~v 220 (616)
.++..|+...+|++|+-..++|+.|+..|.|++|++.++. ......+|+..|+.+.-+-+|..+++.+... ..
T Consensus 1095 ~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~-----~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~Pls 1169 (1516)
T KOG1832|consen 1095 RSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGS-----MEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLS 1169 (1516)
T ss_pred hhhhccccceeeEEeecCCceEEeeeccceEEEEEccCcc-----ccccccccccccccccccCCcceeeeeccccCchH
Confidence 3577899999999999999999999999999999998763 2334457888999999999999888766543 56
Q ss_pred EEEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEEEECCCccccceEEeeeccCCCCc
Q 048012 221 KIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPGRV 300 (616)
Q Consensus 221 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~ 300 (616)
.+|++...- ..+.....-.++.|+.... .-+.|..-..+.|||+.+......+....... ..
T Consensus 1170 aLW~~~s~~---------------~~~Hsf~ed~~vkFsn~~q-~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~--~y 1231 (1516)
T KOG1832|consen 1170 ALWDASSTG---------------GPRHSFDEDKAVKFSNSLQ-FRALGTEADDALLYDVQTCSPLQTYLTDTVTS--SY 1231 (1516)
T ss_pred HHhcccccc---------------CccccccccceeehhhhHH-HHHhcccccceEEEecccCcHHHHhcCcchhh--hh
Confidence 788876311 0111123456788876543 23333334568899999987766654443221 11
Q ss_pred cEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCCCCCceeeecCCCCCeEEEEEcCCCCeEEEEecCCcEEEEeCCCCCCc
Q 048012 301 AVTTCAWDCDGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHSDDITALKFSSDGRILLSRSFDGSLKVWDLRKMKEP 380 (616)
Q Consensus 301 ~v~~~~~sp~g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~v~lwd~~~~~~~ 380 (616)
.-++..|+|+..+|+ .|| .+||++.. ..++.+...... ..-.|+|.|+.++.-+ .|||+++++.
T Consensus 1232 ~~n~a~FsP~D~LIl---ndG--vLWDvR~~----~aIh~FD~ft~~-~~G~FHP~g~eVIINS-----EIwD~RTF~l- 1295 (1516)
T KOG1832|consen 1232 SNNLAHFSPCDTLIL---NDG--VLWDVRIP----EAIHRFDQFTDY-GGGGFHPSGNEVIINS-----EIWDMRTFKL- 1295 (1516)
T ss_pred hccccccCCCcceEe---eCc--eeeeeccH----HHHhhhhhheec-ccccccCCCceEEeec-----hhhhhHHHHH-
Confidence 236788999988876 355 57999964 455555544432 2346999999988876 4999998643
Q ss_pred ceEecCCCCCCcceeEEECCCCCEEEEe
Q 048012 381 LKVFEDLPNNYAQTNVAFSPDEQLFLTG 408 (616)
Q Consensus 381 ~~~~~~~~~~~~v~~v~fspdg~~l~~g 408 (616)
++.... -.-+.|.|+..|..++..
T Consensus 1296 Lh~VP~----Ldqc~VtFNstG~VmYa~ 1319 (1516)
T KOG1832|consen 1296 LHSVPS----LDQCAVTFNSTGDVMYAM 1319 (1516)
T ss_pred HhcCcc----ccceEEEeccCccchhhh
Confidence 222222 124678899888776654
No 297
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.75 E-value=1.8e-05 Score=76.70 Aligned_cols=227 Identities=19% Similarity=0.145 Sum_probs=139.5
Q ss_pred EEEECC-CCCEEEEEEcCCcEEEEeCCCCccccccceecCCCCCCceEEEEecCCCCeEEEEeCCCeEEEEECCCCeeee
Q 048012 154 ALAVDH-SGSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSDRFLCVTGSAQAKIYDRDGLTLGE 232 (616)
Q Consensus 154 ~v~~sp-~g~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~s~d~~v~vwd~~~~~~~~ 232 (616)
+++|++ ++.++++--..+.|..|+..+..... +.. .. ...+.+...+..|+++... .+.++|..+..+..
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-----~~~-~~--~~G~~~~~~~g~l~v~~~~-~~~~~d~~~g~~~~ 74 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-----IDL-PG--PNGMAFDRPDGRLYVADSG-GIAVVDPDTGKVTV 74 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-----EES-SS--EEEEEEECTTSEEEEEETT-CEEEEETTTTEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-----Eec-CC--CceEEEEccCCEEEEEEcC-ceEEEecCCCcEEE
Confidence 568888 67777776678999999987753211 111 11 6777777333555555554 45556988876654
Q ss_pred EeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCC--------CCEEEEECCCccccceEEeeeccCCCCccEEE
Q 048012 233 FVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSED--------GSLRIWDVNEFKSQKQVIKPKLARPGRVAVTT 304 (616)
Q Consensus 233 ~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~D--------g~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~ 304 (616)
+... ..........+.+++.+++. +.++.... |.|..++.. ++ ...+... .. ..+.
T Consensus 75 ~~~~-------~~~~~~~~~~ND~~vd~~G~-ly~t~~~~~~~~~~~~g~v~~~~~~-~~-~~~~~~~-~~-----~pNG 138 (246)
T PF08450_consen 75 LADL-------PDGGVPFNRPNDVAVDPDGN-LYVTDSGGGGASGIDPGSVYRIDPD-GK-VTVVADG-LG-----FPNG 138 (246)
T ss_dssp EEEE-------ETTCSCTEEEEEEEE-TTS--EEEEEECCBCTTCGGSEEEEEEETT-SE-EEEEEEE-ES-----SEEE
T ss_pred Eeec-------cCCCcccCCCceEEEcCCCC-EEEEecCCCccccccccceEEECCC-Ce-EEEEecC-cc-----cccc
Confidence 4221 00112456789999999874 77766543 446667765 22 2222221 11 4789
Q ss_pred EEECCCCCeEE-EEeCCCcEEEEeCCCCCCCC---CceeeecCCCCCeEEEEEcCCCCeEEEEecCCcEEEEeCCCCCCc
Q 048012 305 CAWDCDGKCIA-GGIGDGSIQVWNLKPGWGSR---PDIHVEKGHSDDITALKFSSDGRILLSRSFDGSLKVWDLRKMKEP 380 (616)
Q Consensus 305 ~~~sp~g~~l~-~g~~dg~I~iwd~~~~~~~~---~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~v~lwd~~~~~~~ 380 (616)
++|+|+++.|+ +-+..+.|..|++....... ..+..+....+..-.+++..+|++.++.-..+.|.++|.+ + ..
T Consensus 139 i~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G-~~ 216 (246)
T PF08450_consen 139 IAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-G-KL 216 (246)
T ss_dssp EEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-S-CE
T ss_pred eEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-c-cE
Confidence 99999998765 55677889999986431101 1111122222347889999999998888889999999987 3 34
Q ss_pred ceEecCCCCCCcceeEEE-CCCCCEEEEee
Q 048012 381 LKVFEDLPNNYAQTNVAF-SPDEQLFLTGT 409 (616)
Q Consensus 381 ~~~~~~~~~~~~v~~v~f-spdg~~l~~gs 409 (616)
+..+.. + ...+++++| -++.+.|++.+
T Consensus 217 ~~~i~~-p-~~~~t~~~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 217 LREIEL-P-VPRPTNCAFGGPDGKTLYVTT 244 (246)
T ss_dssp EEEEE--S-SSSEEEEEEESTTSSEEEEEE
T ss_pred EEEEcC-C-CCCEEEEEEECCCCCEEEEEe
Confidence 554443 2 225899999 46766666554
No 298
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.73 E-value=2.7e-07 Score=84.18 Aligned_cols=151 Identities=19% Similarity=0.243 Sum_probs=95.8
Q ss_pred ecCCCCeEEEEeCCCeEEEEECCCCeeeeEeeCceeEeecccC-CCcccceEEEEEcCCCCCEEEEEe-----CCCCEEE
Q 048012 204 WSPTSDRFLCVTGSAQAKIYDRDGLTLGEFVKGDMYIRDLKNT-KGHICGLTCGEWHPKTKETILTSS-----EDGSLRI 277 (616)
Q Consensus 204 ~sp~g~~l~~~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~p~~~~~l~s~s-----~Dg~v~i 277 (616)
.+-.++.++++..|+.+.+++.+... . . .... ..|.+.. +.+....+ +.+.++. .-+..++
T Consensus 97 ~s~~~t~V~~~~~dg~~~v~s~~~~~-~-~---------~~~i~~~~~~~a-s~~~~~~~-~~i~s~~~g~~n~~d~~~a 163 (319)
T KOG4714|consen 97 CTMTDNRVCIGYADGSLAVFSTDKDL-A-L---------MSRIPSIHSGSA-SRKICRHG-NSILSGGCGNWNAQDNFYA 163 (319)
T ss_pred ccccCCceEecCCCceEEEEechHHH-h-h---------hhhccccccccc-ccceeecc-cEEecCCcceEeeccceee
Confidence 34456778999999999999876411 0 0 0001 1121111 11111112 2333322 1233556
Q ss_pred EECCCccccceEEeeeccCCCCccEEEEEECCC-CCeEEEEeCCCcEEEEeCCCCCCCCCceeeecCCCCCeEEEEEcC-
Q 048012 278 WDVNEFKSQKQVIKPKLARPGRVAVTTCAWDCD-GKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHSDDITALKFSS- 355 (616)
Q Consensus 278 wd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~-g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp- 355 (616)
|+++. +..+..... ....|++++-+|. .+++++|+.||.|-+||.+.. .-+...+.+|..+|+.|-|+|
T Consensus 164 ~~~~p---~~t~~~~~~---~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~---~~p~S~l~ahk~~i~eV~FHpk 234 (319)
T KOG4714|consen 164 NTLDP---IKTLIPSKK---ALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNV---AMPVSLLKAHKAEIWEVHFHPK 234 (319)
T ss_pred ecccc---ccccccccc---ccccchhhhCCcccccEEEEecCCCeEEEEEcccc---cchHHHHHHhhhhhhheeccCC
Confidence 66543 222222221 1114888988885 557888999999999999975 246677899999999999999
Q ss_pred CCCeEEEEecCCcEEEEeCCC
Q 048012 356 DGRILLSRSFDGSLKVWDLRK 376 (616)
Q Consensus 356 dg~~l~s~s~Dg~v~lwd~~~ 376 (616)
++..|++++.||.+.-||..+
T Consensus 235 ~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 235 NPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred CchheeEecCCCcEEEEcCCC
Confidence 778999999999999999873
No 299
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.73 E-value=1.8e-07 Score=90.65 Aligned_cols=166 Identities=11% Similarity=0.142 Sum_probs=103.9
Q ss_pred EEEcCCCCCEEEEEeCCCCEEEEECCCccccceEEeeeccCCCCccEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCCCC
Q 048012 256 GEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWDCDGKCIAGGIGDGSIQVWNLKPGWGSR 335 (616)
Q Consensus 256 ~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~g~~dg~I~iwd~~~~~~~~ 335 (616)
+..++.+ .+|+.+..+....++++........+........ ..+++.|..+...+.++..-|-++.+|+-+.. .
T Consensus 68 ~~~s~~~-~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~---~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~--~ 141 (390)
T KOG3914|consen 68 VLTSDSG-RLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPK---RPTAISFIREDTSVLVADKAGDVYSFDILSAD--S 141 (390)
T ss_pred cccCCCc-eEEEEEeCCCceEEEEEecCCCcceeeeEeeccc---CcceeeeeeccceEEEEeecCCceeeeeeccc--c
Confidence 3445544 5788777777777777665433222222221111 22334444444444444444444444433310 0
Q ss_pred CceeeecCCCCCeEEEEEcCCCCeEEEEecCCcEEEEeCCCCCCcceEecCCCCCCcceeEEECCCCCEEEEeecccccc
Q 048012 336 PDIHVEKGHSDDITALKFSSDGRILLSRSFDGSLKVWDLRKMKEPLKVFEDLPNNYAQTNVAFSPDEQLFLTGTSVERES 415 (616)
Q Consensus 336 ~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~gs~~~~~~ 415 (616)
-......+|-+-++.|+|+||+++|+++..|..|++-....... +..+ -+.|...|..++.-++ +.|++++
T Consensus 142 ~~~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~-Iesf-clGH~eFVS~isl~~~-~~LlS~s------ 212 (390)
T KOG3914|consen 142 GRCEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFV-IESF-CLGHKEFVSTISLTDN-YLLLSGS------ 212 (390)
T ss_pred cCcchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccc-hhhh-ccccHhheeeeeeccC-ceeeecC------
Confidence 23445678999999999999999999999999999977654222 2222 1234455888888765 4478887
Q ss_pred CCCceEEEEeCCCCceEEEEec
Q 048012 416 TTGGLLCFYDREKLELVSRVGI 437 (616)
Q Consensus 416 ~~dg~i~iwd~~~~~~~~~~~~ 437 (616)
.|++|++||+.+|+++.++..
T Consensus 213 -GD~tlr~Wd~~sgk~L~t~dl 233 (390)
T KOG3914|consen 213 -GDKTLRLWDITSGKLLDTCDL 233 (390)
T ss_pred -CCCcEEEEecccCCcccccch
Confidence 899999999999999877644
No 300
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.70 E-value=2.5e-06 Score=79.69 Aligned_cols=201 Identities=15% Similarity=0.153 Sum_probs=111.3
Q ss_pred cEEEEEECCCCCEEEEEEcCCcEEEEeCCCCcccccccee-cCCCCCCceEEEEecCC------CCeEEEEeCCCeEEEE
Q 048012 151 IVSALAVDHSGSRVLSGSYDYTVRMYDFQGMNSRLQSFRQ-LEPSEGHQVRNLSWSPT------SDRFLCVTGSAQAKIY 223 (616)
Q Consensus 151 ~V~~v~~sp~g~~lasgs~Dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~v~~l~~sp~------g~~l~~~s~d~~v~vw 223 (616)
.=+.++||||+.+||.+...|+|++||+.+..-....... ....-...|..+.|-.. ...|++....|.++-|
T Consensus 45 QWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy 124 (282)
T PF15492_consen 45 QWRKLAWSPDCTLLAYAESTGTIRVFDLMGSELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSY 124 (282)
T ss_pred hheEEEECCCCcEEEEEcCCCeEEEEecccceeEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeE
Confidence 3467899999999999999999999999763211111111 11112345777777543 2257778888888877
Q ss_pred ECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCC-EEEEECCCccccceEEeeeccCCCCccE
Q 048012 224 DRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGS-LRIWDVNEFKSQKQVIKPKLARPGRVAV 302 (616)
Q Consensus 224 d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~-v~iwd~~~~~~~~~~~~~~~~~~~~~~v 302 (616)
-+..+....+. ....+.....+...|.++.|+|.. ++|+.|+.... -..+... ...+
T Consensus 125 ~vs~gt~q~y~----e~hsfsf~~~yp~Gi~~~vy~p~h-~LLlVgG~~~~~~~~s~a~-----------------~~GL 182 (282)
T PF15492_consen 125 LVSVGTNQGYQ----ENHSFSFSSHYPHGINSAVYHPKH-RLLLVGGCEQNQDGMSKAS-----------------SCGL 182 (282)
T ss_pred EEEcccCCcce----eeEEEEecccCCCceeEEEEcCCC-CEEEEeccCCCCCcccccc-----------------ccCc
Confidence 75322111110 111222234557899999999976 46666654322 0010000 0011
Q ss_pred EEEEE---CCCCCeEEEEeCCCc------EEEEeCCCCCCCCCceeeecCCCCCeEEEEEcCCCCeEEEEecCCcEEEEe
Q 048012 303 TTCAW---DCDGKCIAGGIGDGS------IQVWNLKPGWGSRPDIHVEKGHSDDITALKFSSDGRILLSRSFDGSLKVWD 373 (616)
Q Consensus 303 ~~~~~---sp~g~~l~~g~~dg~------I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~v~lwd 373 (616)
++-.. .|..+. ++...|+. ..+|.+-+. ............|..|..||||.+||+...+|.|.||+
T Consensus 183 taWRiL~~~Pyyk~-v~~~~~~~~~~~~~~~~~~~~~~----~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~ 257 (282)
T PF15492_consen 183 TAWRILSDSPYYKQ-VTSSEDDITASSKRRGLLRIPSF----KFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWE 257 (282)
T ss_pred eEEEEcCCCCcEEE-ccccCccccccccccceeeccce----eeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEe
Confidence 11111 111111 11111211 123332211 11122233456799999999999999999999999999
Q ss_pred CCCCC
Q 048012 374 LRKMK 378 (616)
Q Consensus 374 ~~~~~ 378 (616)
+-+.+
T Consensus 258 iPsL~ 262 (282)
T PF15492_consen 258 IPSLR 262 (282)
T ss_pred cCcch
Confidence 98644
No 301
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.69 E-value=1.8e-07 Score=91.56 Aligned_cols=207 Identities=15% Similarity=0.177 Sum_probs=148.3
Q ss_pred ecCCCCeEEEEeCCCeEEEEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeC-CCCEEEEECCC
Q 048012 204 WSPTSDRFLCVTGSAQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSE-DGSLRIWDVNE 282 (616)
Q Consensus 204 ~sp~g~~l~~~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~-Dg~v~iwd~~~ 282 (616)
+....+++++++.||.++.|--..-...++ ++.+..|...|.+++.+-++ .++.|.+. |..++++|+.+
T Consensus 16 ~~tka~fiiqASlDGh~KFWkKs~isGvEf---------VKhFraHL~~I~sl~~S~dg-~L~~Sv~d~Dhs~KvfDvEn 85 (558)
T KOG0882|consen 16 FPTKAKFIIQASLDGHKKFWKKSRISGVEF---------VKHFRAHLGVILSLAVSYDG-WLFRSVEDPDHSVKVFDVEN 85 (558)
T ss_pred eeehhheEEeeecchhhhhcCCCCccceee---------hhhhHHHHHHHHhhhccccc-eeEeeccCcccceeEEEeec
Confidence 334557899999999999998665444343 55577899999999988876 58888777 99999999987
Q ss_pred ccccceEEeeeccCCCCccEEEEEECCCC----CeEEEEeCCCcEEEEeCCCCCCCCCceeeecCCCCCeEEEEEcCCCC
Q 048012 283 FKSQKQVIKPKLARPGRVAVTTCAWDCDG----KCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHSDDITALKFSSDGR 358 (616)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~v~~~~~sp~g----~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~ 358 (616)
......+...... ...++..+ .| .+-++.-.+|.|.++|-... ..+......-|..+|.++.+++-+.
T Consensus 86 ~DminmiKL~~lP-----g~a~wv~s-kGd~~s~IAVs~~~sg~i~VvD~~~d--~~q~~~fkklH~sPV~~i~y~qa~D 157 (558)
T KOG0882|consen 86 FDMINMIKLVDLP-----GFAEWVTS-KGDKISLIAVSLFKSGKIFVVDGFGD--FCQDGYFKKLHFSPVKKIRYNQAGD 157 (558)
T ss_pred cchhhhcccccCC-----CceEEecC-CCCeeeeEEeecccCCCcEEECCcCC--cCccceecccccCceEEEEeecccc
Confidence 6554333322221 11222222 23 23334456899999998875 3355556677999999999999999
Q ss_pred eEEEEecCCcEEEEeCCC-CCCcce-----------EecCCCCCCcceeEEECCCCCEEEEeeccccccCCCceEEEEeC
Q 048012 359 ILLSRSFDGSLKVWDLRK-MKEPLK-----------VFEDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDR 426 (616)
Q Consensus 359 ~l~s~s~Dg~v~lwd~~~-~~~~~~-----------~~~~~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~ 426 (616)
.+++....|.|.-|.... .+.+.. .+.........+++.|+|++..+.+-. .|..|++++.
T Consensus 158 s~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~-------~DrkVR~F~~ 230 (558)
T KOG0882|consen 158 SAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLN-------PDRKVRGFVF 230 (558)
T ss_pred ceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccC-------cccEEEEEEe
Confidence 999999999999998872 111111 111122345578999999999999988 8999999999
Q ss_pred CCCceEEEE
Q 048012 427 EKLELVSRV 435 (616)
Q Consensus 427 ~~~~~~~~~ 435 (616)
+++++++.+
T Consensus 231 KtGklvqei 239 (558)
T KOG0882|consen 231 KTGKLVQEI 239 (558)
T ss_pred ccchhhhhh
Confidence 999877655
No 302
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.65 E-value=7.4e-06 Score=86.83 Aligned_cols=213 Identities=16% Similarity=0.220 Sum_probs=136.3
Q ss_pred EEecCCCCeEEEEeCCCeEEEEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCC-----EE
Q 048012 202 LSWSPTSDRFLCVTGSAQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGS-----LR 276 (616)
Q Consensus 202 l~~sp~g~~l~~~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~-----v~ 276 (616)
-+|++.+..++.|+.+|.|.+++..-..+ ..+..+...+...-|.-+..++|++.+.|.. |+
T Consensus 29 sc~~s~~~~vvigt~~G~V~~Ln~s~~~~-------------~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llk 95 (933)
T KOG2114|consen 29 SCCSSSTGSVVIGTADGRVVILNSSFQLI-------------RGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLK 95 (933)
T ss_pred eEEcCCCceEEEeeccccEEEecccceee-------------ehheecchhhhhHhhcccCceEEEEEeecCCCCceEEE
Confidence 45778888999999999999988553322 2234444443333344445468888777654 89
Q ss_pred EEECCCccccc--eEE---e--eeccCCCCccEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCCCCCceeeecCCCCCeE
Q 048012 277 IWDVNEFKSQK--QVI---K--PKLARPGRVAVTTCAWDCDGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHSDDIT 349 (616)
Q Consensus 277 iwd~~~~~~~~--~~~---~--~~~~~~~~~~v~~~~~sp~g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~ 349 (616)
|||+...+... .+. + .........++.+++.+.+-+.+|+|-.+|.|.++.-.-................+|+
T Consensus 96 iw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pIT 175 (933)
T KOG2114|consen 96 IWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPIT 175 (933)
T ss_pred EecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCce
Confidence 99997542211 111 1 1111223457889999999999999999999999954321111122233334457899
Q ss_pred EEEEcCCCCeEEEEecCCcEEEEeCCCCCCcceEecCCCCCCcceeEEECCCCCEEEEeeccccccCCCceEEEEeCCCC
Q 048012 350 ALKFSSDGRILLSRSFDGSLKVWDLRKMKEPLKVFEDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREKL 429 (616)
Q Consensus 350 ~l~~spdg~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~~ 429 (616)
.+++..++..++-...-..|.+|.+.......+.+.. ++..+.|..|++....+++++ +..|.+|+....
T Consensus 176 gL~~~~d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~--~G~~lnCss~~~~t~qfIca~--------~e~l~fY~sd~~ 245 (933)
T KOG2114|consen 176 GLALRSDGKSVLFVATTEQVMLYSLSGRTPSLKVLDN--NGISLNCSSFSDGTYQFICAG--------SEFLYFYDSDGR 245 (933)
T ss_pred eeEEecCCceeEEEEecceeEEEEecCCCcceeeecc--CCccceeeecCCCCccEEEec--------CceEEEEcCCCc
Confidence 9999999987444444567999999843312333443 445588888887666455553 467999998876
Q ss_pred ceEEEEec
Q 048012 430 ELVSRVGI 437 (616)
Q Consensus 430 ~~~~~~~~ 437 (616)
..-..+..
T Consensus 246 ~~cfaf~~ 253 (933)
T KOG2114|consen 246 GPCFAFEV 253 (933)
T ss_pred ceeeeecC
Confidence 66666653
No 303
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.62 E-value=3.3e-07 Score=83.61 Aligned_cols=207 Identities=13% Similarity=0.164 Sum_probs=120.3
Q ss_pred eEEEEEcCCCCCEEEEEeCCCCEEEEECCCccccceEEeeeccCCCCccEEEEEE----------CCCCCeEEEEeCCCc
Q 048012 253 LTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAW----------DCDGKCIAGGIGDGS 322 (616)
Q Consensus 253 v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~----------sp~g~~l~~g~~dg~ 322 (616)
|+.+.+.-+ ..|+++..++.+......+..+.....+.. ...+..+++. +--++.++++..||.
T Consensus 39 ~~~~~~v~~--~~lf~~e~~~~~ss~g~~r~~~~~~~~rt~----~i~~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~ 112 (319)
T KOG4714|consen 39 LSKVSLSAE--YILFTGETSSQIISLGKGRGRCISLWERDD----GIDPFKVLAKNSEIDPNDACTMTDNRVCIGYADGS 112 (319)
T ss_pred EEEeechhh--heeecccchhheeeeccceEEEechhhccc----CcCceeeeeccCCCCCcccccccCCceEecCCCce
Confidence 555555543 577777777776666544332221111100 0011222222 223677999999999
Q ss_pred EEEEeCCCCCCCCCceeeecCCCCCeEEEEEcCCCCeEEEEe-----cCCcEEEEeCCCCCCcceEecCCCCCCcceeEE
Q 048012 323 IQVWNLKPGWGSRPDIHVEKGHSDDITALKFSSDGRILLSRS-----FDGSLKVWDLRKMKEPLKVFEDLPNNYAQTNVA 397 (616)
Q Consensus 323 I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s-----~Dg~v~lwd~~~~~~~~~~~~~~~~~~~v~~v~ 397 (616)
+.+++.+.. .........-...-.+.++...+++|.++. .-+..++|+++-.+....... ....|++++
T Consensus 113 ~~v~s~~~~---~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~---~~~~v~~l~ 186 (319)
T KOG4714|consen 113 LAVFSTDKD---LALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKK---ALDAVTALC 186 (319)
T ss_pred EEEEechHH---HhhhhhcccccccccccceeecccEEecCCcceEeeccceeeeccccccccccccc---ccccchhhh
Confidence 999998752 111111111111122333344555555543 234577888775333222211 223389999
Q ss_pred ECCCCCEEEEeeccccccCCCceEEEEeCCCCceEEEEecCCCCCeEEEEEcCCCC-cEEEEeccCCCCceEEEecccCC
Q 048012 398 FSPDEQLFLTGTSVERESTTGGLLCFYDREKLELVSRVGISPACSVVQCAWHPKLN-QIFATAGDKSQGGTHILYDPRLS 476 (616)
Q Consensus 398 fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~-~l~~~~~d~~~~~~~~v~~~~~s 476 (616)
-+|..+.+++++. .+|.+.+||.++...+..+...|...++.+.|||... .||+++. ++..+-|+..
T Consensus 187 ~hp~qq~~v~cgt------~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~se----dGslw~wdas-- 254 (319)
T KOG4714|consen 187 SHPAQQHLVCCGT------DDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSE----DGSLWHWDAS-- 254 (319)
T ss_pred CCcccccEEEEec------CCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecC----CCcEEEEcCC--
Confidence 9997665555443 8999999999998766666556788999999999754 5666665 7778888765
Q ss_pred CCCcEEEEe
Q 048012 477 ERGALVCVA 485 (616)
Q Consensus 477 ~~g~~l~s~ 485 (616)
+.+|..+
T Consensus 255 --~~~l~i~ 261 (319)
T KOG4714|consen 255 --TTFLSIS 261 (319)
T ss_pred --CceEEec
Confidence 4555533
No 304
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.57 E-value=7.5e-05 Score=72.12 Aligned_cols=221 Identities=15% Similarity=0.204 Sum_probs=135.7
Q ss_pred eEEEEecCCCCeEE-EEeCC-CeEEEEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeC-----
Q 048012 199 VRNLSWSPTSDRFL-CVTGS-AQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSE----- 271 (616)
Q Consensus 199 v~~l~~sp~g~~l~-~~s~d-~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~----- 271 (616)
...++.+|....++ .+-.- ....+||..+......... ..-+.+.|| ..|++++. +|++.-.
T Consensus 7 gH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a----~~gRHFyGH------g~fs~dG~-~LytTEnd~~~g 75 (305)
T PF07433_consen 7 GHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWA----PPGRHFYGH------GVFSPDGR-LLYTTENDYETG 75 (305)
T ss_pred ccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcC----CCCCEEecC------EEEcCCCC-EEEEeccccCCC
Confidence 45677788544433 34333 3567888877665332111 112233444 47999885 6666533
Q ss_pred CCCEEEEECC-CccccceEEeeeccCCCCccEEEEEECCCCCeEEEEeC------------------CCcEEEEeCCCCC
Q 048012 272 DGSLRIWDVN-EFKSQKQVIKPKLARPGRVAVTTCAWDCDGKCIAGGIG------------------DGSIQVWNLKPGW 332 (616)
Q Consensus 272 Dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~g~~------------------dg~I~iwd~~~~~ 332 (616)
.|.|-|||.. ....+..+. .+-.....+.+.|+|+.|+++.- +-+|.+.|..++
T Consensus 76 ~G~IgVyd~~~~~~ri~E~~------s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG- 148 (305)
T PF07433_consen 76 RGVIGVYDAARGYRRIGEFP------SHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSG- 148 (305)
T ss_pred cEEEEEEECcCCcEEEeEec------CCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCC-
Confidence 4789999998 322222221 22224456778999988777631 224555566655
Q ss_pred CCCCceee--e--cCCCCCeEEEEEcCCCCeEEEEecCCc-------EEEEeCCCCCCcceEecCC-----CCCCcceeE
Q 048012 333 GSRPDIHV--E--KGHSDDITALKFSSDGRILLSRSFDGS-------LKVWDLRKMKEPLKVFEDL-----PNNYAQTNV 396 (616)
Q Consensus 333 ~~~~~~~~--~--~~h~~~V~~l~~spdg~~l~s~s~Dg~-------v~lwd~~~~~~~~~~~~~~-----~~~~~v~~v 396 (616)
..+.. + .-|...|..|++..+|..++..-..|- |-+++... .+..+... .-...+-+|
T Consensus 149 ---~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~---~~~~~~~p~~~~~~l~~Y~gSI 222 (305)
T PF07433_consen 149 ---ALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGG---ALRLLPAPEEQWRRLNGYIGSI 222 (305)
T ss_pred ---ceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCC---cceeccCChHHHHhhCCceEEE
Confidence 23332 3 337778999999999987777655542 44444332 12222211 122448899
Q ss_pred EECCCCCEEEEeeccccccCCCceEEEEeCCCCceEEEEecCCCCCeEEEEEcCCC
Q 048012 397 AFSPDEQLFLTGTSVERESTTGGLLCFYDREKLELVSRVGISPACSVVQCAWHPKL 452 (616)
Q Consensus 397 ~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~ 452 (616)
+++.++.++++.+- ..|.+.+||..+++++...... .+..++..+++
T Consensus 223 a~~~~g~~ia~tsP------rGg~~~~~d~~tg~~~~~~~l~---D~cGva~~~~~ 269 (305)
T PF07433_consen 223 AADRDGRLIAVTSP------RGGRVAVWDAATGRLLGSVPLP---DACGVAPTDDG 269 (305)
T ss_pred EEeCCCCEEEEECC------CCCEEEEEECCCCCEeeccccC---ceeeeeecCCc
Confidence 99999998877764 7899999999999999887653 35666666665
No 305
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.57 E-value=9.3e-05 Score=76.78 Aligned_cols=242 Identities=16% Similarity=0.100 Sum_probs=136.0
Q ss_pred CCCEEEEEEcCCcEEEEeCCCCccccccceecCCCCCCceEEEEecCCCCeEEEEeCCCeEEEEECCCCee-eeEeeCce
Q 048012 160 SGSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSDRFLCVTGSAQAKIYDRDGLTL-GEFVKGDM 238 (616)
Q Consensus 160 ~g~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~s~d~~v~vwd~~~~~~-~~~~~~~~ 238 (616)
++..++.++.++.|..+|..++....+.. ....+.+.-.. .+..+++++.++.+..||..++++ +++.....
T Consensus 104 ~~~~v~v~~~~g~l~ald~~tG~~~W~~~------~~~~~~~~p~v-~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~ 176 (377)
T TIGR03300 104 DGGLVFVGTEKGEVIALDAEDGKELWRAK------LSSEVLSPPLV-ANGLVVVRTNDGRLTALDAATGERLWTYSRVTP 176 (377)
T ss_pred cCCEEEEEcCCCEEEEEECCCCcEeeeec------cCceeecCCEE-ECCEEEEECCCCeEEEEEcCCCceeeEEccCCC
Confidence 36678888899999999987654322211 11112111001 345777788899999999875543 33211100
Q ss_pred eEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEEEECCCccccceEEeeeccCCC-CccEEEEEECC--CCCeEE
Q 048012 239 YIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPG-RVAVTTCAWDC--DGKCIA 315 (616)
Q Consensus 239 ~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~-~~~v~~~~~sp--~g~~l~ 315 (616)
. ......... ... + ..++.+..++.|..+|+.+++.............. ...+..+.-+| .+..++
T Consensus 177 ~----~~~~~~~sp----~~~--~-~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy 245 (377)
T TIGR03300 177 A----LTLRGSASP----VIA--D-GGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVY 245 (377)
T ss_pred c----eeecCCCCC----EEE--C-CEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEE
Confidence 0 000011111 111 2 36778888899999999887654432211100000 00000000011 356788
Q ss_pred EEeCCCcEEEEeCCCCCCCCCceeeecCCCCCeEEEEEcCCCCeEEEEecCCcEEEEeCCCCCCcceEecCCCCCCccee
Q 048012 316 GGIGDGSIQVWNLKPGWGSRPDIHVEKGHSDDITALKFSSDGRILLSRSFDGSLKVWDLRKMKEPLKVFEDLPNNYAQTN 395 (616)
Q Consensus 316 ~g~~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~v~~ 395 (616)
+++.+|.|+.||..++ ..+-... .. ...... ..+..|+.++.||.|..+|..++..... ...... ....+
T Consensus 246 ~~~~~g~l~a~d~~tG----~~~W~~~-~~-~~~~p~--~~~~~vyv~~~~G~l~~~d~~tG~~~W~-~~~~~~-~~~ss 315 (377)
T TIGR03300 246 AVSYQGRVAALDLRSG----RVLWKRD-AS-SYQGPA--VDDNRLYVTDADGVVVALDRRSGSELWK-NDELKY-RQLTA 315 (377)
T ss_pred EEEcCCEEEEEECCCC----cEEEeec-cC-CccCce--EeCCEEEEECCCCeEEEEECCCCcEEEc-cccccC-Ccccc
Confidence 8888999999999877 2222222 11 112222 2466788888999999999987643221 111111 11222
Q ss_pred EEECCCCCEEEEeeccccccCCCceEEEEeCCCCceEEEEecC
Q 048012 396 VAFSPDEQLFLTGTSVERESTTGGLLCFYDREKLELVSRVGIS 438 (616)
Q Consensus 396 v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~~~~~~~~~~~ 438 (616)
... .+.+|++++ .+|.|+++|..+++.+.++...
T Consensus 316 p~i--~g~~l~~~~-------~~G~l~~~d~~tG~~~~~~~~~ 349 (377)
T TIGR03300 316 PAV--VGGYLVVGD-------FEGYLHWLSREDGSFVARLKTD 349 (377)
T ss_pred CEE--ECCEEEEEe-------CCCEEEEEECCCCCEEEEEEcC
Confidence 222 466888888 8999999999999999888753
No 306
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.56 E-value=4.6e-05 Score=79.04 Aligned_cols=230 Identities=14% Similarity=0.105 Sum_probs=129.8
Q ss_pred CCEEEEEEcCCcEEEEeCCCCccccccceecCCCCCCceEEEEecCCCCeEEEEeCCCeEEEEECCCCee-eeEeeCcee
Q 048012 161 GSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSDRFLCVTGSAQAKIYDRDGLTL-GEFVKGDMY 239 (616)
Q Consensus 161 g~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~s~d~~v~vwd~~~~~~-~~~~~~~~~ 239 (616)
+.+|++++.++.|..+|..++....+... ...... ... .++..+++++.++.+..+|..++++ +....
T Consensus 65 ~~~v~v~~~~g~v~a~d~~tG~~~W~~~~-~~~~~~----~p~--v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~---- 133 (377)
T TIGR03300 65 GGKVYAADADGTVVALDAETGKRLWRVDL-DERLSG----GVG--ADGGLVFVGTEKGEVIALDAEDGKELWRAKL---- 133 (377)
T ss_pred CCEEEEECCCCeEEEEEccCCcEeeeecC-CCCccc----ceE--EcCCEEEEEcCCCEEEEEECCCCcEeeeecc----
Confidence 56888888899999999876543221110 000011 111 2467788889999999999865543 32211
Q ss_pred EeecccCCCcccceEE-EEEcCCCCCEEEEEeCCCCEEEEECCCccccceEEeeeccCCCCccEEEEEECCCCCeEEEEe
Q 048012 240 IRDLKNTKGHICGLTC-GEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWDCDGKCIAGGI 318 (616)
Q Consensus 240 ~~~~~~~~~h~~~v~~-~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~g~ 318 (616)
. ..+.+ .... + ..++.++.++.|..||..+++.................. +... .+..++.+.
T Consensus 134 -------~---~~~~~~p~v~--~-~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~-sp~~--~~~~v~~~~ 197 (377)
T TIGR03300 134 -------S---SEVLSPPLVA--N-GLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSA-SPVI--ADGGVLVGF 197 (377)
T ss_pred -------C---ceeecCCEEE--C-CEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCC-CCEE--ECCEEEEEC
Confidence 1 11111 1111 2 367777889999999999887655443211100000000 1111 124677888
Q ss_pred CCCcEEEEeCCCCCCCCCceeeec-CCC---C---CeEEEEEcC--CCCeEEEEecCCcEEEEeCCCCCCcceEecCCCC
Q 048012 319 GDGSIQVWNLKPGWGSRPDIHVEK-GHS---D---DITALKFSS--DGRILLSRSFDGSLKVWDLRKMKEPLKVFEDLPN 389 (616)
Q Consensus 319 ~dg~I~iwd~~~~~~~~~~~~~~~-~h~---~---~V~~l~~sp--dg~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~ 389 (616)
.+|.|..+|.+++. .+-... ... . .+..+.-+| .+..++.++.+|.++.||+.++.... ... ..
T Consensus 198 ~~g~v~ald~~tG~----~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W-~~~-~~- 270 (377)
T TIGR03300 198 AGGKLVALDLQTGQ----PLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLW-KRD-AS- 270 (377)
T ss_pred CCCEEEEEEccCCC----EeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcEEE-eec-cC-
Confidence 89999999998872 221111 000 0 000111111 35578888889999999998764322 111 11
Q ss_pred CCcceeEEECCCCCEEEEeeccccccCCCceEEEEeCCCCceEEEE
Q 048012 390 NYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREKLELVSRV 435 (616)
Q Consensus 390 ~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~~~~~~~~ 435 (616)
...... .++..|++++ .+|.|+.+|..+++.+...
T Consensus 271 --~~~~p~--~~~~~vyv~~-------~~G~l~~~d~~tG~~~W~~ 305 (377)
T TIGR03300 271 --SYQGPA--VDDNRLYVTD-------ADGVVVALDRRSGSELWKN 305 (377)
T ss_pred --CccCce--EeCCEEEEEC-------CCCeEEEEECCCCcEEEcc
Confidence 111222 3466777777 7899999999999887655
No 307
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.56 E-value=1.9e-07 Score=61.42 Aligned_cols=36 Identities=31% Similarity=0.517 Sum_probs=34.3
Q ss_pred eEEecCCcccEEEEEECCCCCEEEEEEcCCcEEEEe
Q 048012 142 EIVLKGHTKIVSALAVDHSGSRVLSGSYDYTVRMYD 177 (616)
Q Consensus 142 ~~~l~~H~~~V~~v~~sp~g~~lasgs~Dg~i~iwd 177 (616)
..++.+|.+.|++|+|+|++.+|++|+.|++|+|||
T Consensus 4 ~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 4 VRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred EEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 468899999999999999999999999999999997
No 308
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.53 E-value=2e-06 Score=90.36 Aligned_cols=110 Identities=13% Similarity=0.221 Sum_probs=82.7
Q ss_pred EEEEEECCCCCEEEEEEc----CCcEEEEeCCCCccccccceecCCCCCCceEEEEecCCCCeEEEEeCCCeEEEEECCC
Q 048012 152 VSALAVDHSGSRVLSGSY----DYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSDRFLCVTGSAQAKIYDRDG 227 (616)
Q Consensus 152 V~~v~~sp~g~~lasgs~----Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~s~d~~v~vwd~~~ 227 (616)
-+-..|+|...+||.++. .|.|.||--.+... +.. ..+. .+.+++|+|..-.|+.+-.-|.+.+|....
T Consensus 18 sti~SWHPsePlfAVA~fS~er~GSVtIfadtGEPq--r~V--t~P~---hatSLCWHpe~~vLa~gwe~g~~~v~~~~~ 90 (1416)
T KOG3617|consen 18 STISSWHPSEPLFAVASFSPERGGSVTIFADTGEPQ--RDV--TYPV---HATSLCWHPEEFVLAQGWEMGVSDVQKTNT 90 (1416)
T ss_pred ccccccCCCCceeEEEEecCCCCceEEEEecCCCCC--ccc--ccce---ehhhhccChHHHHHhhccccceeEEEecCC
Confidence 344579999999998875 47888885433211 000 0111 167799999988888888899999999877
Q ss_pred CeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEEEECC
Q 048012 228 LTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVN 281 (616)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~ 281 (616)
.+.... ...|...|..+.|+++| ..++++..-|.|.+|.+.
T Consensus 91 ~e~htv------------~~th~a~i~~l~wS~~G-~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 91 TETHTV------------VETHPAPIQGLDWSHDG-TVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred ceeeee------------ccCCCCCceeEEecCCC-CeEEEcCCCceeEEEEee
Confidence 664332 46799999999999988 599999999999999875
No 309
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.51 E-value=6.8e-05 Score=82.72 Aligned_cols=214 Identities=14% Similarity=0.164 Sum_probs=134.1
Q ss_pred cccEEEEEECCCCCEEEEEEcCCcEEEEeCCCCccccccceecCCCCCCceEEEEecCCCCeEEEEeCCCeEEEEECCC-
Q 048012 149 TKIVSALAVDHSGSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSDRFLCVTGSAQAKIYDRDG- 227 (616)
Q Consensus 149 ~~~V~~v~~sp~g~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~s~d~~v~vwd~~~- 227 (616)
...|.++.|..++.-++.+..+|.|.+-|.+++. ..+...-...|.+++||||...++.+++.+++.+.+-+-
T Consensus 68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~------~eivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~ 141 (1265)
T KOG1920|consen 68 DDEIVSVQFLADTNSICVITALGDIILVDPETLE------LEIVGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFE 141 (1265)
T ss_pred CcceEEEEEecccceEEEEecCCcEEEEcccccc------eeeeeeccCceEEEeecCCCcEEEEEeCCcEEEEEecccc
Confidence 3678999999999999999999999999877642 111122345699999999999999999999888765421
Q ss_pred ----Cee-------eeEeeCceeEeecccCCC---------------------cccceEEEEEcCCCCCEEEEEe----C
Q 048012 228 ----LTL-------GEFVKGDMYIRDLKNTKG---------------------HICGLTCGEWHPKTKETILTSS----E 271 (616)
Q Consensus 228 ----~~~-------~~~~~~~~~~~~~~~~~~---------------------h~~~v~~~~~~p~~~~~l~s~s----~ 271 (616)
..+ ..+... .+-+.-..++| -.+.=+.+.|--+| .++++.. .
T Consensus 142 ~i~E~~L~~d~~~~sk~v~V-GwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg-~~fAVs~~~~~~ 219 (1265)
T KOG1920|consen 142 PIAEKPLDADDERKSKFVNV-GWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDG-EYFAVSFVESET 219 (1265)
T ss_pred chhcccccccccccccccee-cccccceeeecchhhhcccccccccccccchhhccCCceEEEccCC-cEEEEEEEeccC
Confidence 111 000000 00000000010 11112458888877 4776632 2
Q ss_pred C-CCEEEEECCCccccceEEeeeccCCCCccEEEEEECCCCCeEEEEe---CCCcEEEEeCCCCCCCCCceeeecCCCCC
Q 048012 272 D-GSLRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWDCDGKCIAGGI---GDGSIQVWNLKPGWGSRPDIHVEKGHSDD 347 (616)
Q Consensus 272 D-g~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~g~---~dg~I~iwd~~~~~~~~~~~~~~~~h~~~ 347 (616)
+ ..|+|||-. +. ......+.. ..-.+++|-|.|.++++-. .|+.|.+|.-+.- ........+......
T Consensus 220 ~~RkirV~drE-g~-Lns~se~~~-----~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL-~hg~f~l~~p~de~~ 291 (1265)
T KOG1920|consen 220 GTRKIRVYDRE-GA-LNSTSEPVE-----GLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGL-RHGEFVLPFPLDEKE 291 (1265)
T ss_pred CceeEEEeccc-ch-hhcccCccc-----ccccceeecCCCCeEeeeeecCCCCcEEEEecCCc-cccccccCCcccccc
Confidence 3 789999976 22 222211111 1346889999999998864 4567999985542 122222233444455
Q ss_pred eEEEEEcCCCCeEEE---EecCCcEEEEeCCCCC
Q 048012 348 ITALKFSSDGRILLS---RSFDGSLKVWDLRKMK 378 (616)
Q Consensus 348 V~~l~~spdg~~l~s---~s~Dg~v~lwd~~~~~ 378 (616)
|..|+|+.++..|++ ......|++|-+.+..
T Consensus 292 ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~Nyh 325 (1265)
T KOG1920|consen 292 VEELAWNSNSDILAVVTSNLENSLVQLWTTGNYH 325 (1265)
T ss_pred hheeeecCCCCceeeeecccccceEEEEEecCeE
Confidence 999999999999998 4445569999987643
No 310
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.47 E-value=4.9e-06 Score=87.58 Aligned_cols=186 Identities=15% Similarity=0.205 Sum_probs=123.4
Q ss_pred CcccEEEEEECCCCCEEEEEEcCCcEEEEeCCCCccccccceecCCCCCCceEEEEecCCCCeEEEEeCCCeEEEEECCC
Q 048012 148 HTKIVSALAVDHSGSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSDRFLCVTGSAQAKIYDRDG 227 (616)
Q Consensus 148 H~~~V~~v~~sp~g~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~s~d~~v~vwd~~~ 227 (616)
....++|++++ +.+|+-|..+|.|++++.+... ...+ .|... ..+|.++++++.||.|.|-.+.+
T Consensus 38 ~~D~is~~av~--~~~~~~GtH~g~v~~~~~~~~~--~~~~-----~~s~~------~~~Gey~asCS~DGkv~I~sl~~ 102 (846)
T KOG2066|consen 38 QNDAISCCAVH--DKFFALGTHRGAVYLTTCQGNP--KTNF-----DHSSS------ILEGEYVASCSDDGKVVIGSLFT 102 (846)
T ss_pred hhhHHHHHHhh--cceeeeccccceEEEEecCCcc--cccc-----ccccc------ccCCceEEEecCCCcEEEeeccC
Confidence 35678888886 6799999999999999987631 0011 11111 56899999999999999988765
Q ss_pred CeeeeEeeCceeEeecccCCCcccceEEEEEcCC----CCCEEEEEeCCCCEEEEECCCccccceEEeeeccCCCCccEE
Q 048012 228 LTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPK----TKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPGRVAVT 303 (616)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~----~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~ 303 (616)
..... ......++.+++++|+ ....+++|+.-| +.++.-+=......+ ......++|.
T Consensus 103 ~~~~~-------------~~df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v----~l~~~eG~I~ 164 (846)
T KOG2066|consen 103 DDEIT-------------QYDFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSV----VLSEGEGPIH 164 (846)
T ss_pred Cccce-------------eEecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccce----eeecCccceE
Confidence 54211 1234567889999997 234799999888 777654322222222 1234455899
Q ss_pred EEEECCCCCeEEEEeCCCcEEEEeCCCCCCCCCceeeecCCCCC------eEEEEEcCCCCeEEEEecCCcEEEEeCC
Q 048012 304 TCAWDCDGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHSDD------ITALKFSSDGRILLSRSFDGSLKVWDLR 375 (616)
Q Consensus 304 ~~~~sp~g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~h~~~------V~~l~~spdg~~l~s~s~Dg~v~lwd~~ 375 (616)
++.|. |++||-+..+| |++||+... ..+......... -..+.|.++.++++ |...+|+|..++
T Consensus 165 ~i~W~--g~lIAWand~G-v~vyd~~~~----~~l~~i~~p~~~~R~e~fpphl~W~~~~~LVI--GW~d~v~i~~I~ 233 (846)
T KOG2066|consen 165 SIKWR--GNLIAWANDDG-VKVYDTPTR----QRLTNIPPPSQSVRPELFPPHLHWQDEDRLVI--GWGDSVKICSIK 233 (846)
T ss_pred EEEec--CcEEEEecCCC-cEEEecccc----ceeeccCCCCCCCCcccCCCceEecCCCeEEE--ecCCeEEEEEEe
Confidence 99996 88999888766 899999865 233322221122 24677876655443 455678998887
No 311
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.46 E-value=3.7e-05 Score=74.77 Aligned_cols=246 Identities=14% Similarity=0.151 Sum_probs=141.5
Q ss_pred cCCCCCCceEEEEecCCCC-eEEEEeCCCeEEEEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEE
Q 048012 191 LEPSEGHQVRNLSWSPTSD-RFLCVTGSAQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTS 269 (616)
Q Consensus 191 ~~~~~~~~v~~l~~sp~g~-~l~~~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~ 269 (616)
+.+.++..|..++|||... ++..++.+..|+|.|+.+..... ....| ..+++++|.-+..++|+.|
T Consensus 188 ~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vs------------sy~a~-~~~wSC~wDlde~h~IYaG 254 (463)
T KOG1645|consen 188 ILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVS------------SYIAY-NQIWSCCWDLDERHVIYAG 254 (463)
T ss_pred cccccchhhhhhccCccccceeeeeccCceEEEEecccceeee------------heecc-CCceeeeeccCCcceeEEe
Confidence 5566777899999999887 67788999999999999776422 23344 7899999999999999999
Q ss_pred eCCCCEEEEECCCccccceEEeeeccCCCCccEEEEEE------CCCCCeEEEEeCCCcEEEEeCCCCCCCCCceeeecC
Q 048012 270 SEDGSLRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAW------DCDGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKG 343 (616)
Q Consensus 270 s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~------sp~g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~ 343 (616)
-..|.|.|||++............ ....+|..++. .+.|.+|+....+ +..|.+.......+.+..+ .
T Consensus 255 l~nG~VlvyD~R~~~~~~~e~~a~---~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vlel-e 328 (463)
T KOG1645|consen 255 LQNGMVLVYDMRQPEGPLMELVAN---VTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLEL-E 328 (463)
T ss_pred ccCceEEEEEccCCCchHhhhhhh---hccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCccccc-C
Confidence 999999999998755433222110 11113444433 2335555555443 5667765443222332222 2
Q ss_pred CCCCeEEEEEcCCCCe-EEEEecCC----------------cEEEEeCCCCCCcceEecCCCCCCcceeEEE-CCCCCEE
Q 048012 344 HSDDITALKFSSDGRI-LLSRSFDG----------------SLKVWDLRKMKEPLKVFEDLPNNYAQTNVAF-SPDEQLF 405 (616)
Q Consensus 344 h~~~V~~l~~spdg~~-l~s~s~Dg----------------~v~lwd~~~~~~~~~~~~~~~~~~~v~~v~f-spdg~~l 405 (616)
..+.+.++.+.+-.+. |++.-.+- -.-||-.+.. .+......-.-+...+ .++..+|
T Consensus 329 ~pG~cismqy~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~-----~~Gs~~~kl~t~~ai~~~~~nn~i 403 (463)
T KOG1645|consen 329 PPGICISMQYHGVSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRT-----YFGSKQTKLSTTQAIRAVEDNNYI 403 (463)
T ss_pred CCcceeeeeecCccceEEEEecCCCCCccceeeeeeeccccCceeeeeccc-----ccCCcccccccccceeccccccEE
Confidence 2345556666663343 33332211 0122222110 0000000000112222 3455555
Q ss_pred EEeeccccccCCCceEEEEeCCCCceEEEEecCCCCCeEEEEEc-CCCCcEEEEeccCCCCceEEEec
Q 048012 406 LTGTSVERESTTGGLLCFYDREKLELVSRVGISPACSVVQCAWH-PKLNQIFATAGDKSQGGTHILYD 472 (616)
Q Consensus 406 ~~gs~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~-p~~~~l~~~~~d~~~~~~~~v~~ 472 (616)
+.-+. ..+.+.+||..+++.++++.+. .+|.++... -+++.+++.-. +..+.||.
T Consensus 404 v~~gd------~tn~lil~D~~s~evvQ~l~~~--epv~Dicp~~~n~~syLa~LT----d~~v~Iyk 459 (463)
T KOG1645|consen 404 VVVGD------STNELILQDPHSFEVVQTLALS--EPVLDICPNDTNGSSYLALLT----DDRVHIYK 459 (463)
T ss_pred EEecC------CcceeEEeccchhheeeecccC--cceeecceeecCCcchhhhee----cceEEEEe
Confidence 55432 5678999999999999999764 567776543 34444444433 33455554
No 312
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.46 E-value=6.2e-05 Score=72.66 Aligned_cols=214 Identities=19% Similarity=0.175 Sum_probs=137.9
Q ss_pred EEEEEcCCCCCEEEEEeCCCC-EEEEECCCccccceEEeeeccCCCCccEEEEEECCCCCeEEEEeC-----CCcEEEEe
Q 048012 254 TCGEWHPKTKETILTSSEDGS-LRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWDCDGKCIAGGIG-----DGSIQVWN 327 (616)
Q Consensus 254 ~~~~~~p~~~~~l~s~s~Dg~-v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~g~~-----dg~I~iwd 327 (616)
..++.+|.....++.+-.-|+ +.+||..++.....+... .++.-.-..+|+++|++|++.-. .|.|-|||
T Consensus 8 H~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~----~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd 83 (305)
T PF07433_consen 8 HGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAP----PGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYD 83 (305)
T ss_pred cceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCC----CCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEE
Confidence 467788877678888888776 678999887765544322 12222334679999999998644 58899999
Q ss_pred CCCCCCCCCceeeecCCCCCeEEEEEcCCCCeEEEEec-------CC-----------cEEEEeCCCCCCcceEecC--C
Q 048012 328 LKPGWGSRPDIHVEKGHSDDITALKFSSDGRILLSRSF-------DG-----------SLKVWDLRKMKEPLKVFED--L 387 (616)
Q Consensus 328 ~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~-------Dg-----------~v~lwd~~~~~~~~~~~~~--~ 387 (616)
...+ ...+..+..|.-.-..|.+.|||+.|+.+-. .| .|.+.|..++.. +....- .
T Consensus 84 ~~~~---~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~l-l~q~~Lp~~ 159 (305)
T PF07433_consen 84 AARG---YRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGAL-LEQVELPPD 159 (305)
T ss_pred CcCC---cEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCce-eeeeecCcc
Confidence 9853 3667777888777788999999987777631 12 344444444332 222111 1
Q ss_pred CCCCcceeEEECCCCCEEEEeeccccccCCCceEEEEeCCCCceEEEEecC------CCCCeEEEEEcCCCCcEEEEecc
Q 048012 388 PNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREKLELVSRVGIS------PACSVVQCAWHPKLNQIFATAGD 461 (616)
Q Consensus 388 ~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~~~~~~~~~~~------~~~~v~~~~~~p~~~~l~~~~~d 461 (616)
.+...+..+++.++|..++..-........--.|.+++... .+..+..+ -...+-+|+++.++..+++++--
T Consensus 160 ~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~--~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPr 237 (305)
T PF07433_consen 160 LHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGG--ALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPR 237 (305)
T ss_pred ccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCC--cceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCC
Confidence 23345899999999988777652111111112344454333 23333221 23568899999999999998884
Q ss_pred CCCCceEEEecccCCCCCcEEE
Q 048012 462 KSQGGTHILYDPRLSERGALVC 483 (616)
Q Consensus 462 ~~~~~~~~v~~~~~s~~g~~l~ 483 (616)
++.+.+|+.+ .|+++.
T Consensus 238 ---Gg~~~~~d~~---tg~~~~ 253 (305)
T PF07433_consen 238 ---GGRVAVWDAA---TGRLLG 253 (305)
T ss_pred ---CCEEEEEECC---CCCEee
Confidence 9999999765 355543
No 313
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.44 E-value=0.00012 Score=75.30 Aligned_cols=117 Identities=22% Similarity=0.249 Sum_probs=81.7
Q ss_pred eEEEEEcCCCCCEEEEEe----CCCC----EEEEECCCccccceEEeeeccCCCCccEEEEEECCCCCeEEEEeCCCcEE
Q 048012 253 LTCGEWHPKTKETILTSS----EDGS----LRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWDCDGKCIAGGIGDGSIQ 324 (616)
Q Consensus 253 v~~~~~~p~~~~~l~s~s----~Dg~----v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~g~~dg~I~ 324 (616)
..++.|+-...+.+.+.. .+|. -.+|++...+.. .+..... .....|.|++++|+...|+.|+.||+|.
T Consensus 208 Pl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klq-rvsvtsi--pL~s~v~~ca~sp~E~kLvlGC~DgSii 284 (545)
T PF11768_consen 208 PLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQ-RVSVTSI--PLPSQVICCARSPSEDKLVLGCEDGSII 284 (545)
T ss_pred cEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCcee-EEEEEEE--ecCCcceEEecCcccceEEEEecCCeEE
Confidence 356677765555666542 3343 346776544322 2221111 3334799999999999999999999999
Q ss_pred EEeCCCCCCCCCceeeecCCCCCeEEEEEcCCCCeEEEEecCCcEEEEeCCCCC
Q 048012 325 VWNLKPGWGSRPDIHVEKGHSDDITALKFSSDGRILLSRSFDGSLKVWDLRKMK 378 (616)
Q Consensus 325 iwd~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~v~lwd~~~~~ 378 (616)
+||...+ +.....+.-..+.++|+|+|.+|++|+..|.+.+||+.-..
T Consensus 285 LyD~~~~------~t~~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALsp 332 (545)
T PF11768_consen 285 LYDTTRG------VTLLAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALSP 332 (545)
T ss_pred EEEcCCC------eeeeeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecCc
Confidence 9998754 22222334557899999999999999999999999987543
No 314
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.41 E-value=6.5e-07 Score=58.88 Aligned_cols=38 Identities=39% Similarity=0.748 Sum_probs=35.6
Q ss_pred CceeeecCCCCCeEEEEEcCCCCeEEEEecCCcEEEEe
Q 048012 336 PDIHVEKGHSDDITALKFSSDGRILLSRSFDGSLKVWD 373 (616)
Q Consensus 336 ~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~v~lwd 373 (616)
.++..+.+|...|++|+|+|++++|++++.|++|++||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 35678899999999999999999999999999999997
No 315
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.38 E-value=3.4e-07 Score=93.59 Aligned_cols=231 Identities=17% Similarity=0.303 Sum_probs=148.6
Q ss_pred eEEEEecCCCC--eEEEEeCCCeEEEEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEe----CC
Q 048012 199 VRNLSWSPTSD--RFLCVTGSAQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSS----ED 272 (616)
Q Consensus 199 v~~l~~sp~g~--~l~~~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s----~D 272 (616)
+.|+++.-+.+ .+++|..+|.|.+..+....-. .-....+|...+++++|++-+.++|+.|- .|
T Consensus 59 ~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdS----------s~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnd 128 (783)
T KOG1008|consen 59 VKCVASFYGNDRCILAVGSATGNISLLSVRHPHDS----------SAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRND 128 (783)
T ss_pred ceeehhhcCCchhhhhhccccCceEEeecCCcccc----------cceecccccccccccccccccHHHHHhhhhhhccc
Confidence 66777765544 5777888999998876643211 12235788889999999997666777763 36
Q ss_pred CCEEEEECCCccccceEEeeeccCCCCccEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCCCCCceeeecCCCCCeEEEE
Q 048012 273 GSLRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWDCDGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHSDDITALK 352 (616)
Q Consensus 273 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~ 352 (616)
..+.|||+.+.-....- ......+--....+++|..+.+++.+|.....|.++|++.. ......-.+..+..+.
T Consensus 129 s~~~Iwdi~s~ltvPke-~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs-----~~~~~svnTk~vqG~t 202 (783)
T KOG1008|consen 129 SSLKIWDINSLLTVPKE-SPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQS-----LDSVSSVNTKYVQGIT 202 (783)
T ss_pred CCccceecccccCCCcc-ccccccccccCccccccccCcchhhcccccchhhhhhhhhh-----hhhhhhhhhhhcccce
Confidence 77999999875211100 00000111124568899999999999999999999999843 2222222334566788
Q ss_pred EcC-CCCeEEEEecCCcEEEEe-CCCCCCcceEecCCCC--CCcceeEEECCCCC-EEEEeeccccccCCCceEEEEeCC
Q 048012 353 FSS-DGRILLSRSFDGSLKVWD-LRKMKEPLKVFEDLPN--NYAQTNVAFSPDEQ-LFLTGTSVERESTTGGLLCFYDRE 427 (616)
Q Consensus 353 ~sp-dg~~l~s~s~Dg~v~lwd-~~~~~~~~~~~~~~~~--~~~v~~v~fspdg~-~l~~gs~~~~~~~~dg~i~iwd~~ 427 (616)
..| .++++++-. ||.|.+|| .++...++..+...+. ...+..++|+|... .+++.+. ..++|++||+.
T Consensus 203 Vdp~~~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~R------dS~tIrlydi~ 275 (783)
T KOG1008|consen 203 VDPFSPNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSR------DSITIRLYDIC 275 (783)
T ss_pred ecCCCCCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhcc------CcceEEEeccc
Confidence 888 778887766 99999999 6766666665543322 22478899999644 3444442 67899999964
Q ss_pred CC------c---eEEE---EecCCC---CCeEEEEEcCCC
Q 048012 428 KL------E---LVSR---VGISPA---CSVVQCAWHPKL 452 (616)
Q Consensus 428 ~~------~---~~~~---~~~~~~---~~v~~~~~~p~~ 452 (616)
.- + .+.. +.+.+. ..|....||+..
T Consensus 276 ~v~t~~s~nn~~~~~~~s~~~~q~~~~~s~I~~f~wH~~s 315 (783)
T KOG1008|consen 276 VVGTEGSANNSVFVNYESKYPVQPNSQCSGIDFFTWHTAS 315 (783)
T ss_pred ccCCcccccccceeeecccccccccccccceeecCcCcCC
Confidence 21 0 1111 112232 457788899875
No 316
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.37 E-value=1.2e-05 Score=85.64 Aligned_cols=180 Identities=18% Similarity=0.270 Sum_probs=121.6
Q ss_pred CEEEEEeCCCCEEEEECCCccccceEEeeeccCCCCccEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCCCCCceeeecC
Q 048012 264 ETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWDCDGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKG 343 (616)
Q Consensus 264 ~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~ 343 (616)
..++-|+.-..+..+|+++.+........ . ..|+-+. .+++++.+|...|+|.+-|.++. ..++.+.+
T Consensus 148 ~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~----a--~~v~imR--~Nnr~lf~G~t~G~V~LrD~~s~----~~iht~~a 215 (1118)
T KOG1275|consen 148 STLIMGGLQEKLIHIDLNTEKETRTTNVS----A--SGVTIMR--YNNRNLFCGDTRGTVFLRDPNSF----ETIHTFDA 215 (1118)
T ss_pred cceeecchhhheeeeecccceeeeeeecc----C--CceEEEE--ecCcEEEeecccceEEeecCCcC----ceeeeeec
Confidence 56777777777888999875543322111 1 1244444 46899999999999999999975 78999999
Q ss_pred CCCCeEEEEEcCCCCeEEEEec---------CCcEEEEeCCCCCCcceEecCCCCCCcceeEEECCC-CCEEEEeecccc
Q 048012 344 HSDDITALKFSSDGRILLSRSF---------DGSLKVWDLRKMKEPLKVFEDLPNNYAQTNVAFSPD-EQLFLTGTSVER 413 (616)
Q Consensus 344 h~~~V~~l~~spdg~~l~s~s~---------Dg~v~lwd~~~~~~~~~~~~~~~~~~~v~~v~fspd-g~~l~~gs~~~~ 413 (616)
|.+.|..+.. .|++|++||. |..|++||+|..+. +....-.....-+.|.|. ...+++++
T Consensus 216 Hs~siSDfDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmra----l~PI~~~~~P~flrf~Psl~t~~~V~S---- 285 (1118)
T KOG1275|consen 216 HSGSISDFDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRA----LSPIQFPYGPQFLRFHPSLTTRLAVTS---- 285 (1118)
T ss_pred cccceeeeec--cCCeEEEeecccccccccccchhhhhhhhhhhc----cCCcccccCchhhhhcccccceEEEEe----
Confidence 9999987766 5999999985 55689999997543 111111222345778885 34555555
Q ss_pred ccCCCceEEEEeCCCCc-e-EEEEecCC-CCCeEEEEEcCCCCcEEEEeccCCCCceEEEec
Q 048012 414 ESTTGGLLCFYDREKLE-L-VSRVGISP-ACSVVQCAWHPKLNQIFATAGDKSQGGTHILYD 472 (616)
Q Consensus 414 ~~~~dg~i~iwd~~~~~-~-~~~~~~~~-~~~v~~~~~~p~~~~l~~~~~d~~~~~~~~v~~ 472 (616)
..|...+-|..+.. . .....+.+ ...+..+.++++++.|+.+.. .+.+.+|.
T Consensus 286 ---~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~----~g~v~~wa 340 (1118)
T KOG1275|consen 286 ---QSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDH----EGHVNLWA 340 (1118)
T ss_pred ---cccceeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEecc----cCcEeeec
Confidence 67889999843321 1 11111222 334888888888888888876 56677776
No 317
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.36 E-value=0.00015 Score=70.96 Aligned_cols=256 Identities=14% Similarity=0.095 Sum_probs=142.1
Q ss_pred EEEECCCCCEEEEEE----------cCCcEEEEeCCCCccccccceecC-C-CCCCceEEEEecCCCCeEEEEeC--CCe
Q 048012 154 ALAVDHSGSRVLSGS----------YDYTVRMYDFQGMNSRLQSFRQLE-P-SEGHQVRNLSWSPTSDRFLCVTG--SAQ 219 (616)
Q Consensus 154 ~v~~sp~g~~lasgs----------~Dg~i~iwd~~~~~~~~~~~~~~~-~-~~~~~v~~l~~sp~g~~l~~~s~--d~~ 219 (616)
.+.++|+|+.+++++ ..-.|.+||..+..........-. . ........++++.+++++++... ...
T Consensus 40 ~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~S 119 (342)
T PF06433_consen 40 NVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPATS 119 (342)
T ss_dssp EEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSEE
T ss_pred ceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEccCCCCe
Confidence 356789999888753 345699999887532211111000 0 01112345788999999887644 468
Q ss_pred EEEEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEEEECCCccccceEEeeeccCCCC
Q 048012 220 AKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPGR 299 (616)
Q Consensus 220 v~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~ 299 (616)
|.|.|+...++..... +. -|....|.++.-|.+-+.||++....+...................
T Consensus 120 VtVVDl~~~kvv~ei~----------~P------GC~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~d 183 (342)
T PF06433_consen 120 VTVVDLAAKKVVGEID----------TP------GCWLIYPSGNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDD 183 (342)
T ss_dssp EEEEETTTTEEEEEEE----------GT------SEEEEEEEETTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS
T ss_pred EEEEECCCCceeeeec----------CC------CEEEEEecCCCceEEEecCCceEEEEECCCCCEeEeeccccCCCCc
Confidence 9999998877533211 11 1223334454678888999999999988443332222222211122
Q ss_pred ccEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCCCCCceeeecCC----------CCCeEEEEEcCCCCeEEEEec---C
Q 048012 300 VAVTTCAWDCDGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGH----------SDDITALKFSSDGRILLSRSF---D 366 (616)
Q Consensus 300 ~~v~~~~~sp~g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~h----------~~~V~~l~~spdg~~l~s~s~---D 366 (616)
..+..-++...+..++--+.+|.|+-.|+... .......+..- .+.-.-+++++..+.|++.-. +
T Consensus 184 p~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~--~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~ 261 (342)
T PF06433_consen 184 PLFEHPAYSRDGGRLYFVSYEGNVYSADLSGD--SAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGE 261 (342)
T ss_dssp -B-S--EEETTTTEEEEEBTTSEEEEEEETTS--SEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--T
T ss_pred ccccccceECCCCeEEEEecCCEEEEEeccCC--cccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCC
Confidence 12223345555555666778999999988764 11111122111 122445788876655554321 2
Q ss_pred C-------cEEEEeCCCCCCcceEecCCCCCCcceeEEECCCCC-EEEEeeccccccCCCceEEEEeCCCCceEEEEec
Q 048012 367 G-------SLKVWDLRKMKEPLKVFEDLPNNYAQTNVAFSPDEQ-LFLTGTSVERESTTGGLLCFYDREKLELVSRVGI 437 (616)
Q Consensus 367 g-------~v~lwd~~~~~~~~~~~~~~~~~~~v~~v~fspdg~-~l~~gs~~~~~~~~dg~i~iwd~~~~~~~~~~~~ 437 (616)
+ .|.+||+.+.++ +..+. -...+.+|+.+.+.+ +|++.+. .++.|.+||..+++.++++..
T Consensus 262 gsHKdpgteVWv~D~~t~kr-v~Ri~---l~~~~~Si~Vsqd~~P~L~~~~~------~~~~l~v~D~~tGk~~~~~~~ 330 (342)
T PF06433_consen 262 GSHKDPGTEVWVYDLKTHKR-VARIP---LEHPIDSIAVSQDDKPLLYALSA------GDGTLDVYDAATGKLVRSIEQ 330 (342)
T ss_dssp T-TTS-EEEEEEEETTTTEE-EEEEE---EEEEESEEEEESSSS-EEEEEET------TTTEEEEEETTT--EEEEE--
T ss_pred CCccCCceEEEEEECCCCeE-EEEEe---CCCccceEEEccCCCcEEEEEcC------CCCeEEEEeCcCCcEEeehhc
Confidence 2 377778876543 33332 123477999999877 5554442 578999999999999998853
No 318
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.36 E-value=0.00028 Score=67.89 Aligned_cols=224 Identities=19% Similarity=0.143 Sum_probs=126.1
Q ss_pred CCcEEEEeCCCCccccccceecCCCCCCceEEEEecCCCCeEEEEeCCCeEEEEECCCCe-eeeEeeCceeEeecccCCC
Q 048012 170 DYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSDRFLCVTGSAQAKIYDRDGLT-LGEFVKGDMYIRDLKNTKG 248 (616)
Q Consensus 170 Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~s~d~~v~vwd~~~~~-~~~~~~~~~~~~~~~~~~~ 248 (616)
+|+|..||..++....+. .+...... ..+. ..+++.++++++.++.+..||..+++ ++.+.. .+
T Consensus 2 ~g~l~~~d~~tG~~~W~~--~~~~~~~~-~~~~-~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~-----------~~ 66 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSY--DLGPGIGG-PVAT-AVPDGGRVYVASGDGNLYALDAKTGKVLWRFDL-----------PG 66 (238)
T ss_dssp TSEEEEEETTTTEEEEEE--ECSSSCSS-EEET-EEEETTEEEEEETTSEEEEEETTTSEEEEEEEC-----------SS
T ss_pred CCEEEEEECCCCCEEEEE--ECCCCCCC-ccce-EEEeCCEEEEEcCCCEEEEEECCCCCEEEEeec-----------cc
Confidence 577788887655432222 11111111 1211 23356778888999999999986554 333321 11
Q ss_pred cccceEEEEEcCCCCCEEEEEeCCCCEEEEECCCccccceEEeeeccCCCCccEEEEEECCCCCeEEEEeCCCcEEEEeC
Q 048012 249 HICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWDCDGKCIAGGIGDGSIQVWNL 328 (616)
Q Consensus 249 h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~g~~dg~I~iwd~ 328 (616)
..... ... . + ..++.++.++.|+.+|..+++.............. ..........+..++++..++.|+.+|+
T Consensus 67 ~~~~~--~~~-~-~-~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~l~~~d~ 139 (238)
T PF13360_consen 67 PISGA--PVV-D-G-GRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAG--VRSSSSPAVDGDRLYVGTSSGKLVALDP 139 (238)
T ss_dssp CGGSG--EEE-E-T-TEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCS--TB--SEEEEETTEEEEEETCSEEEEEET
T ss_pred cccce--eee-c-c-cccccccceeeeEecccCCcceeeeeccccccccc--cccccCceEecCEEEEEeccCcEEEEec
Confidence 11111 111 1 3 46777778889999999998877663222111011 1111122223788889988999999999
Q ss_pred CCCCCCCCceeeecCCCCC----------eEEEEEcCCCCeEEEEecCCcEEEEeCCCCCCcceEecCCCCCCcceeEEE
Q 048012 329 KPGWGSRPDIHVEKGHSDD----------ITALKFSSDGRILLSRSFDGSLKVWDLRKMKEPLKVFEDLPNNYAQTNVAF 398 (616)
Q Consensus 329 ~~~~~~~~~~~~~~~h~~~----------V~~l~~spdg~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~v~~v~f 398 (616)
++| ..+......... +.+-....++ .++.++.++.+..+|+.++... +...... +.. ..
T Consensus 140 ~tG----~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg~~~---w~~~~~~--~~~-~~ 208 (238)
T PF13360_consen 140 KTG----KLLWKYPVGEPRGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATGEKL---WSKPISG--IYS-LP 208 (238)
T ss_dssp TTT----EEEEEEESSTT-SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEEETTTTEEE---EEECSS---ECE-CE
T ss_pred CCC----cEEEEeecCCCCCCcceeeecccccceEEECC-EEEEEcCCCeEEEEECCCCCEE---EEecCCC--ccC-Cc
Confidence 987 344333332211 1222222344 6777777775444499876522 2221111 222 24
Q ss_pred CCCCCEEEEeeccccccCCCceEEEEeCCCCceEE
Q 048012 399 SPDEQLFLTGTSVERESTTGGLLCFYDREKLELVS 433 (616)
Q Consensus 399 spdg~~l~~gs~~~~~~~~dg~i~iwd~~~~~~~~ 433 (616)
..++..|++++ .++.|.+||+.+++.+-
T Consensus 209 ~~~~~~l~~~~-------~~~~l~~~d~~tG~~~W 236 (238)
T PF13360_consen 209 SVDGGTLYVTS-------SDGRLYALDLKTGKVVW 236 (238)
T ss_dssp ECCCTEEEEEE-------TTTEEEEEETTTTEEEE
T ss_pred eeeCCEEEEEe-------CCCEEEEEECCCCCEEe
Confidence 56788888887 79999999999998764
No 319
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.31 E-value=0.00018 Score=76.01 Aligned_cols=112 Identities=14% Similarity=0.179 Sum_probs=73.8
Q ss_pred CCCCCeEEEEeCCCcEEEEeCCCCCCCCCceeeecCCCCCeEEEEEcCCCCeEEEEe-cCCcEEEEeCCCCCCcc-----
Q 048012 308 DCDGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHSDDITALKFSSDGRILLSRS-FDGSLKVWDLRKMKEPL----- 381 (616)
Q Consensus 308 sp~g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s-~Dg~v~lwd~~~~~~~~----- 381 (616)
.++|++...+ ++.|.++|.++..+....+.....-......|.++|||+++++++ .+.+|.|+|+.+.+..+
T Consensus 285 vkdGK~~~V~--gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~ 362 (635)
T PRK02888 285 VKAGKFKTIG--GSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIK 362 (635)
T ss_pred hhCCCEEEEC--CCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCC
Confidence 3467776663 678999998861000112233333345678999999999888776 58899999998754311
Q ss_pred --e-EecCCCCCCcceeEEECCCCCEEEEeeccccccCCCceEEEEeCCC
Q 048012 382 --K-VFEDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREK 428 (616)
Q Consensus 382 --~-~~~~~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~ 428 (616)
. +.....-.......+|.++|....+-. .|..|..||+.+
T Consensus 363 ~~~~vvaevevGlGPLHTaFDg~G~aytslf-------~dsqv~kwn~~~ 405 (635)
T PRK02888 363 PRDAVVAEPELGLGPLHTAFDGRGNAYTTLF-------LDSQIVKWNIEA 405 (635)
T ss_pred ccceEEEeeccCCCcceEEECCCCCEEEeEe-------ecceeEEEehHH
Confidence 0 111111223356789999998666666 789999999876
No 320
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.31 E-value=0.0016 Score=67.29 Aligned_cols=124 Identities=18% Similarity=0.189 Sum_probs=87.3
Q ss_pred eEEEEEcC-CCCeEEEE----ecCCc----EEEEeCCCCCCcceEecCCCCCCcceeEEECCCCCEEEEeeccccccCCC
Q 048012 348 ITALKFSS-DGRILLSR----SFDGS----LKVWDLRKMKEPLKVFEDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTG 418 (616)
Q Consensus 348 V~~l~~sp-dg~~l~s~----s~Dg~----v~lwd~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~d 418 (616)
..++.||- +.+.+.+. +.+|. -.+|++...+.....+...+....+.+++++|+...|+.|+ .|
T Consensus 208 Pl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC-------~D 280 (545)
T PF11768_consen 208 PLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGC-------ED 280 (545)
T ss_pred cEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEe-------cC
Confidence 45677776 44455543 23443 35677654332222333445667799999999999999999 99
Q ss_pred ceEEEEeCCCCceEEEEecCCCCCeEEEEEcCCCCcEEEEeccCCCCceEEEecccCCCCCcEEEEe
Q 048012 419 GLLCFYDREKLELVSRVGISPACSVVQCAWHPKLNQIFATAGDKSQGGTHILYDPRLSERGALVCVA 485 (616)
Q Consensus 419 g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~~~~~~~v~~~~~s~~g~~l~s~ 485 (616)
|.|.+||...+..... . ..-.++.++|||++..+++++. -+.+.+||++.+|=...|.+-
T Consensus 281 gSiiLyD~~~~~t~~~-k--a~~~P~~iaWHp~gai~~V~s~----qGelQ~FD~ALspi~~qLlsE 340 (545)
T PF11768_consen 281 GSIILYDTTRGVTLLA-K--AEFIPTLIAWHPDGAIFVVGSE----QGELQCFDMALSPIKMQLLSE 340 (545)
T ss_pred CeEEEEEcCCCeeeee-e--ecccceEEEEcCCCcEEEEEcC----CceEEEEEeecCccceeeccc
Confidence 9999999877643322 1 2345788999999999988887 789999999999866555543
No 321
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=98.29 E-value=0.00018 Score=78.69 Aligned_cols=140 Identities=21% Similarity=0.139 Sum_probs=88.6
Q ss_pred CCCeEEEEECCCCeeeeEeeCceeEeecccCCCccc-ceEEEEEc----CCCCCEEEEEeCCCCEEEEECCCccccceEE
Q 048012 216 GSAQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHIC-GLTCGEWH----PKTKETILTSSEDGSLRIWDVNEFKSQKQVI 290 (616)
Q Consensus 216 ~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~-~v~~~~~~----p~~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~ 290 (616)
....|+-.|++.+++.+-.+ .|.. .|..++-. .-.....+.|-.+..|..||.+-.. .+.+.
T Consensus 502 ~~~~ly~mDLe~GKVV~eW~------------~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~-~k~v~ 568 (794)
T PF08553_consen 502 NPNKLYKMDLERGKVVEEWK------------VHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSG-NKLVD 568 (794)
T ss_pred CCCceEEEecCCCcEEEEee------------cCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCC-Cceee
Confidence 35778888888777644322 1111 13332211 1112345667778889999998543 11111
Q ss_pred eeeccCCCCccEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCCCCCceeeecCCCCCeEEEEEcCCCCeEEEEecCCcEE
Q 048012 291 KPKLARPGRVAVTTCAWDCDGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHSDDITALKFSSDGRILLSRSFDGSLK 370 (616)
Q Consensus 291 ~~~~~~~~~~~v~~~~~sp~g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~v~ 370 (616)
............+|++-+.+| +||+|+.+|.|||||- .+ ......+.+-..+|..|..+.||++|+..+ +..|.
T Consensus 569 ~~~k~Y~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~-~g---~~AKT~lp~lG~pI~~iDvt~DGkwilaTc-~tyLl 642 (794)
T PF08553_consen 569 SQSKQYSSKNNFSCFATTEDG-YIAVGSNKGDIRLYDR-LG---KRAKTALPGLGDPIIGIDVTADGKWILATC-KTYLL 642 (794)
T ss_pred ccccccccCCCceEEEecCCc-eEEEEeCCCcEEeecc-cc---hhhhhcCCCCCCCeeEEEecCCCcEEEEee-cceEE
Confidence 111112233367788777666 6899999999999994 33 134445667789999999999999988776 66788
Q ss_pred EEeC
Q 048012 371 VWDL 374 (616)
Q Consensus 371 lwd~ 374 (616)
|++.
T Consensus 643 Li~t 646 (794)
T PF08553_consen 643 LIDT 646 (794)
T ss_pred EEEE
Confidence 8875
No 322
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.28 E-value=7e-05 Score=78.14 Aligned_cols=165 Identities=11% Similarity=0.144 Sum_probs=111.9
Q ss_pred CCceEEEEecCCCCeEEEEeCCCeEEEEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCE
Q 048012 196 GHQVRNLSWSPTSDRFLCVTGSAQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSL 275 (616)
Q Consensus 196 ~~~v~~l~~sp~g~~l~~~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v 275 (616)
...|.--+++..+++++.|+..|.+++|+..++..... +..+-...+..+..+++. .+++.|+..|.|
T Consensus 33 ~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~-----------~~~~~~~~~~~~~vs~~e-~lvAagt~~g~V 100 (726)
T KOG3621|consen 33 PARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKL-----------KNEGATGITCVRSVSSVE-YLVAAGTASGRV 100 (726)
T ss_pred cceEEEEEeecCCceEEEecccceEEEEecCchhhhcc-----------cccCccceEEEEEecchh-HhhhhhcCCceE
Confidence 33477778888999999999999999999988764221 122333444555667755 688899999999
Q ss_pred EEEECCCccccceEEeeeccCCCCccEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCCCCCceeeecCCCCCeEEEEEcC
Q 048012 276 RIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWDCDGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHSDDITALKFSS 355 (616)
Q Consensus 276 ~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp 355 (616)
.++-++................|...|++++|++++..+++|...|.|.+-.+.+..-.......+..-.+.|..|.+.
T Consensus 101 ~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~- 179 (726)
T KOG3621|consen 101 SVFQLNKELPRDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYL- 179 (726)
T ss_pred EeehhhccCCCcceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeecc-
Confidence 9999887544444444444445777899999999999999999999999888775100112222333345677777765
Q ss_pred CCCeEEEEecCCcEEEEeCC
Q 048012 356 DGRILLSRSFDGSLKVWDLR 375 (616)
Q Consensus 356 dg~~l~s~s~Dg~v~lwd~~ 375 (616)
++.+|++...- ..++++.
T Consensus 180 q~~LLVStl~r--~~Lc~tE 197 (726)
T KOG3621|consen 180 QSYLLVSTLTR--CILCQTE 197 (726)
T ss_pred cceehHhhhhh--hheeecc
Confidence 44455544432 3455554
No 323
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.26 E-value=0.00016 Score=77.11 Aligned_cols=211 Identities=15% Similarity=0.161 Sum_probs=128.7
Q ss_pred cEEEEEECCCCCEEEEEEcCCcEEEEeCCCCccccccceecCCCCCCceEEEEecCCCCeEEEEeCCC-----eEEEEEC
Q 048012 151 IVSALAVDHSGSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSDRFLCVTGSA-----QAKIYDR 225 (616)
Q Consensus 151 ~V~~v~~sp~g~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~s~d~-----~v~vwd~ 225 (616)
.|+| |++.+..+|.|+.+|.|.+.+-.- +....+.......|..+.......+|++.+.|. .++||++
T Consensus 27 ~isc--~~s~~~~vvigt~~G~V~~Ln~s~-----~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~l 99 (933)
T KOG2114|consen 27 AISC--CSSSTGSVVIGTADGRVVILNSSF-----QLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDL 99 (933)
T ss_pred ceeE--EcCCCceEEEeeccccEEEecccc-----eeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecc
Confidence 5555 568889999999999988876321 111212221222233333333345677766553 5999998
Q ss_pred CCCeeeeEeeCceeEeecccC--CCcccceEEEEEcCCCCCEEEEEeCCCCEEEEECCCccccceEEeeeccCCCCccEE
Q 048012 226 DGLTLGEFVKGDMYIRDLKNT--KGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPGRVAVT 303 (616)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~--~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~ 303 (616)
+...-... ..-.+...+... .....++.+++.+.+- ..+|+|-.+|.|.++.-.-.+.. -.+......+..+|+
T Consensus 100 ek~~~n~s-P~c~~~~ri~~~~np~~~~p~s~l~Vs~~l-~~Iv~Gf~nG~V~~~~GDi~RDr--gsr~~~~~~~~~pIT 175 (933)
T KOG2114|consen 100 EKVDKNNS-PQCLYEHRIFTIKNPTNPSPASSLAVSEDL-KTIVCGFTNGLVICYKGDILRDR--GSRQDYSHRGKEPIT 175 (933)
T ss_pred cccCCCCC-cceeeeeeeeccCCCCCCCcceEEEEEccc-cEEEEEecCcEEEEEcCcchhcc--ccceeeeccCCCCce
Confidence 75421110 000111111111 1245678888888875 58999999999998853211111 112222345556899
Q ss_pred EEEECCCCCeEEEEeCCCcEEEEeCCCCCCCCCceeeecCCCCCeEEEEEcCCCCeEEEEecCCcEEEEeCCC
Q 048012 304 TCAWDCDGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHSDDITALKFSSDGRILLSRSFDGSLKVWDLRK 376 (616)
Q Consensus 304 ~~~~sp~g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~v~lwd~~~ 376 (616)
.+++..++..++-...-..|.+|.+... .+....+..|...+.|..|++....|++++ +..|.+|+...
T Consensus 176 gL~~~~d~~s~lFv~Tt~~V~~y~l~gr---~p~~~~ld~~G~~lnCss~~~~t~qfIca~-~e~l~fY~sd~ 244 (933)
T KOG2114|consen 176 GLALRSDGKSVLFVATTEQVMLYSLSGR---TPSLKVLDNNGISLNCSSFSDGTYQFICAG-SEFLYFYDSDG 244 (933)
T ss_pred eeEEecCCceeEEEEecceeEEEEecCC---CcceeeeccCCccceeeecCCCCccEEEec-CceEEEEcCCC
Confidence 9999999887333333567999999843 245666888989999999997665466555 45699999874
No 324
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.26 E-value=9.3e-05 Score=71.26 Aligned_cols=212 Identities=18% Similarity=0.175 Sum_probs=122.8
Q ss_pred CCCEEEEECCCccccceEEeeeccCCCCccEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCCCCCceeeecCCCCCeEEE
Q 048012 272 DGSLRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWDCDGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHSDDITAL 351 (616)
Q Consensus 272 Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l 351 (616)
+|+|..||..+++......... ... ...+..+ +++..+++++.++.|+.||..++ ..+-.... ...+...
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~---~~~-~~~~~~~-~~~~~v~~~~~~~~l~~~d~~tG----~~~W~~~~-~~~~~~~ 71 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGP---GIG-GPVATAV-PDGGRVYVASGDGNLYALDAKTG----KVLWRFDL-PGPISGA 71 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSS---SCS-SEEETEE-EETTEEEEEETTSEEEEEETTTS----EEEEEEEC-SSCGGSG
T ss_pred CCEEEEEECCCCCEEEEEECCC---CCC-CccceEE-EeCCEEEEEcCCCEEEEEECCCC----CEEEEeec-cccccce
Confidence 6889999998887766653211 111 2221122 25677778889999999999887 33333332 2222111
Q ss_pred EEcCCCCeEEEEecCCcEEEEeCCCCCCcceEecCC-CCCCcceeEEECCCCCEEEEeeccccccCCCceEEEEeCCCCc
Q 048012 352 KFSSDGRILLSRSFDGSLKVWDLRKMKEPLKVFEDL-PNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREKLE 430 (616)
Q Consensus 352 ~~spdg~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~-~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~~~ 430 (616)
. ...+..++.++.++.|+.+|+.++....+..... +............++..++++. .++.|+.+|+.+|+
T Consensus 72 ~-~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~g~l~~~d~~tG~ 143 (238)
T PF13360_consen 72 P-VVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGT-------SSGKLVALDPKTGK 143 (238)
T ss_dssp E-EEETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEE-------TCSEEEEEETTTTE
T ss_pred e-eecccccccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEe-------ccCcEEEEecCCCc
Confidence 1 2235566777788899999988876544422221 1111122223333478888887 68999999999999
Q ss_pred eEEEEecCCCC---C------e-EEEEEcCCCCcEEEEeccC------CCCceEEEeccc-------CCCCCcEEEEecC
Q 048012 431 LVSRVGISPAC---S------V-VQCAWHPKLNQIFATAGDK------SQGGTHILYDPR-------LSERGALVCVARA 487 (616)
Q Consensus 431 ~~~~~~~~~~~---~------v-~~~~~~p~~~~l~~~~~d~------~~~~~~~v~~~~-------~s~~g~~l~s~~~ 487 (616)
.+......... . + ..+.+. ++ .++++..++ ...+. .+|... ....+..|+.++.
T Consensus 144 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~v~~~~~~g~~~~~d~~tg~-~~w~~~~~~~~~~~~~~~~~l~~~~~ 220 (238)
T PF13360_consen 144 LLWKYPVGEPRGSSPISSFSDINGSPVIS-DG-RVYVSSGDGRVVAVDLATGE-KLWSKPISGIYSLPSVDGGTLYVTSS 220 (238)
T ss_dssp EEEEEESSTT-SS--EEEETTEEEEEECC-TT-EEEEECCTSSEEEEETTTTE-EEEEECSS-ECECEECCCTEEEEEET
T ss_pred EEEEeecCCCCCCcceeeecccccceEEE-CC-EEEEEcCCCeEEEEECCCCC-EEEEecCCCccCCceeeCCEEEEEeC
Confidence 98888763211 1 1 223333 33 555555432 01111 225322 2345666666668
Q ss_pred CcceecccccCCceeeC
Q 048012 488 PRKKSVDDFEVAPVIHN 504 (616)
Q Consensus 488 d~~~~~wd~~~~~~~~~ 504 (616)
++.+..+|..++.++|.
T Consensus 221 ~~~l~~~d~~tG~~~W~ 237 (238)
T PF13360_consen 221 DGRLYALDLKTGKVVWQ 237 (238)
T ss_dssp TTEEEEEETTTTEEEEE
T ss_pred CCEEEEEECCCCCEEeE
Confidence 88999999888877763
No 325
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.25 E-value=0.0016 Score=67.90 Aligned_cols=260 Identities=12% Similarity=0.062 Sum_probs=140.2
Q ss_pred CCEEEEEEcCCcEEEEeCCCCccccccceecCCCCCCceEE-EEecCCCCeEEEEeCCCeEEEEECCCCe-eeeEeeCce
Q 048012 161 GSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRN-LSWSPTSDRFLCVTGSAQAKIYDRDGLT-LGEFVKGDM 238 (616)
Q Consensus 161 g~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~-l~~sp~g~~l~~~s~d~~v~vwd~~~~~-~~~~~~~~~ 238 (616)
+..|+.++.++.|..+|..++....+... ...+.+ ... .+..+++++.++.+..+|..+++ ++.+.....
T Consensus 120 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~------~~~~~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~ 191 (394)
T PRK11138 120 GGKVYIGSEKGQVYALNAEDGEVAWQTKV------AGEALSRPVV--SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVP 191 (394)
T ss_pred CCEEEEEcCCCEEEEEECCCCCCcccccC------CCceecCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeecCCCC
Confidence 45777788899999999887654332211 111111 111 24567778889999999987554 333321100
Q ss_pred eEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEEEECCCccccceEEeeeccCCCC-ccEEEEEECC--CCCeEE
Q 048012 239 YIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPGR-VAVTTCAWDC--DGKCIA 315 (616)
Q Consensus 239 ~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~-~~v~~~~~sp--~g~~l~ 315 (616)
.....+...++. . + ..++.++.++.|..+|..+++............... .....+..+| .+..++
T Consensus 192 ----~~~~~~~~sP~v----~--~-~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy 260 (394)
T PRK11138 192 ----SLTLRGESAPAT----A--F-GGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVY 260 (394)
T ss_pred ----cccccCCCCCEE----E--C-CEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEE
Confidence 000111111211 1 2 256677788999999998877655432211100000 0001111112 245677
Q ss_pred EEeCCCcEEEEeCCCCCCCCCceeeecCCCCCeEEEEEcCCCCeEEEEecCCcEEEEeCCCCCCcceEecCCCCCCccee
Q 048012 316 GGIGDGSIQVWNLKPGWGSRPDIHVEKGHSDDITALKFSSDGRILLSRSFDGSLKVWDLRKMKEPLKVFEDLPNNYAQTN 395 (616)
Q Consensus 316 ~g~~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~v~~ 395 (616)
+++.+|.+..+|..++. .+-... ......+.. .+..|+.++.+|.|..+|..++....+. ..... ....+
T Consensus 261 ~~~~~g~l~ald~~tG~----~~W~~~--~~~~~~~~~--~~~~vy~~~~~g~l~ald~~tG~~~W~~-~~~~~-~~~~s 330 (394)
T PRK11138 261 ALAYNGNLVALDLRSGQ----IVWKRE--YGSVNDFAV--DGGRIYLVDQNDRVYALDTRGGVELWSQ-SDLLH-RLLTA 330 (394)
T ss_pred EEEcCCeEEEEECCCCC----EEEeec--CCCccCcEE--ECCEEEEEcCCCeEEEEECCCCcEEEcc-cccCC-CcccC
Confidence 77789999999998872 221111 111112222 4667788888999999999876432211 11111 11222
Q ss_pred EEECCCCCEEEEeeccccccCCCceEEEEeCCCCceEEEEecCCCCCeEEEEEcCCCCcEEEEec
Q 048012 396 VAFSPDEQLFLTGTSVERESTTGGLLCFYDREKLELVSRVGISPACSVVQCAWHPKLNQIFATAG 460 (616)
Q Consensus 396 v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~ 460 (616)
..+ .+.+|++++ .+|.|+++|..+|+.+.+............... ++.|++++.
T Consensus 331 p~v--~~g~l~v~~-------~~G~l~~ld~~tG~~~~~~~~~~~~~~s~P~~~--~~~l~v~t~ 384 (394)
T PRK11138 331 PVL--YNGYLVVGD-------SEGYLHWINREDGRFVAQQKVDSSGFLSEPVVA--DDKLLIQAR 384 (394)
T ss_pred CEE--ECCEEEEEe-------CCCEEEEEECCCCCEEEEEEcCCCcceeCCEEE--CCEEEEEeC
Confidence 222 256677777 799999999999999888765322211111221 346666665
No 326
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.25 E-value=4.8e-06 Score=79.16 Aligned_cols=161 Identities=17% Similarity=0.252 Sum_probs=113.2
Q ss_pred EEEECCC--CCeEEEEeCCCcEEEEeCCCCCCCCCceeeecCCCCCeEEEEEcCCCCeEEEEecCCcEEEEeCCCC----
Q 048012 304 TCAWDCD--GKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHSDDITALKFSSDGRILLSRSFDGSLKVWDLRKM---- 377 (616)
Q Consensus 304 ~~~~sp~--g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~v~lwd~~~~---- 377 (616)
.|+|+-+ |-. ++.+.+..|-|-|+.++ ....+. ..+.|.++.|...+++++.|...|.|..+|+|..
T Consensus 216 ~CawSlni~gyh-fs~G~sqqv~L~nvetg-----~~qsf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~ 288 (425)
T KOG2695|consen 216 SCAWSLNIMGYH-FSVGLSQQVLLTNVETG-----HQQSFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGN 288 (425)
T ss_pred hhhhhhccceee-ecccccceeEEEEeecc-----cccccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCC
Confidence 3466643 333 44445677888999886 233333 5678999999998999999999999999999864
Q ss_pred CCcceEecCCCCCCcceeEEECC-CCCEEEEeeccccccCCCceEEEEeCCCCce---EEEEecCCC-CCeEEEEEcCCC
Q 048012 378 KEPLKVFEDLPNNYAQTNVAFSP-DEQLFLTGTSVERESTTGGLLCFYDREKLEL---VSRVGISPA-CSVVQCAWHPKL 452 (616)
Q Consensus 378 ~~~~~~~~~~~~~~~v~~v~fsp-dg~~l~~gs~~~~~~~~dg~i~iwd~~~~~~---~~~~~~~~~-~~v~~~~~~p~~ 452 (616)
+.+...+ -|...|+++..-. ++++|++.+ .+|.|.+||++--++ +.++..+-+ ..-.-+..++..
T Consensus 289 ~~~a~rl---yh~Ssvtslq~Lq~s~q~LmaS~-------M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~ee 358 (425)
T KOG2695|consen 289 GWCAQRL---YHDSSVTSLQILQFSQQKLMASD-------MTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEE 358 (425)
T ss_pred CcceEEE---EcCcchhhhhhhccccceEeecc-------CcCceeEeeehhhhcccceeeeeccccccccccccccccc
Confidence 2333333 2445688887766 788888887 899999999987777 776654221 222334556666
Q ss_pred CcEEEEeccCCCCceEEEecccCCCCCcEEEEecCC
Q 048012 453 NQIFATAGDKSQGGTHILYDPRLSERGALVCVARAP 488 (616)
Q Consensus 453 ~~l~~~~~d~~~~~~~~v~~~~~s~~g~~l~s~~~d 488 (616)
..|++++. +...+||.+. +|.+|++-...
T Consensus 359 g~I~s~Gd----DcytRiWsl~---~ghLl~tipf~ 387 (425)
T KOG2695|consen 359 GSIFSVGD----DCYTRIWSLD---SGHLLCTIPFP 387 (425)
T ss_pred ceEEEccC----eeEEEEEecc---cCceeeccCCC
Confidence 67777554 7889999987 58888876554
No 327
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.24 E-value=4.8e-07 Score=92.53 Aligned_cols=208 Identities=16% Similarity=0.271 Sum_probs=133.8
Q ss_pred ccceEEEEEcCCCC-CEEEEEeCCCCEEEEECCCccccceEEeeeccCCCCccEEEEEECC-CCCeEEEEe----CCCcE
Q 048012 250 ICGLTCGEWHPKTK-ETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWDC-DGKCIAGGI----GDGSI 323 (616)
Q Consensus 250 ~~~v~~~~~~p~~~-~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~g~~l~~g~----~dg~I 323 (616)
...+.|+++.-+.. .+++.|..+|.|-+-.++..........+ ++...+++++|++ |.+.||+|- .|..+
T Consensus 56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp----~~ar~Ct~lAwneLDtn~LAagldkhrnds~~ 131 (783)
T KOG1008|consen 56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTP----GYARPCTSLAWNELDTNHLAAGLDKHRNDSSL 131 (783)
T ss_pred CCCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecc----cccccccccccccccHHHHHhhhhhhcccCCc
Confidence 34566777655433 58889999999999988765433111111 2223789999988 566777774 36689
Q ss_pred EEEeCCCCCCCCCceeeecC-CCCCeEEEEEcCCCCeEEEEecCCcEEEEeCCCCCCcceEecCCCCCCcceeEEECC-C
Q 048012 324 QVWNLKPGWGSRPDIHVEKG-HSDDITALKFSSDGRILLSRSFDGSLKVWDLRKMKEPLKVFEDLPNNYAQTNVAFSP-D 401 (616)
Q Consensus 324 ~iwd~~~~~~~~~~~~~~~~-h~~~V~~l~~spdg~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~v~~v~fsp-d 401 (616)
.|||+.+.......-..+.+ ......+++|-.+.++|++|.....++++|+|........+.. ..+..+..+| .
T Consensus 132 ~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~svnT----k~vqG~tVdp~~ 207 (783)
T KOG1008|consen 132 KIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSVNT----KYVQGITVDPFS 207 (783)
T ss_pred cceecccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhhhh----hhcccceecCCC
Confidence 99999876321111111222 3345678999999999999999999999999843221222211 2266788888 6
Q ss_pred CCEEEEeeccccccCCCceEEEEe-CCCCce-EEEEecCC---CCCeEEEEEcCCCCcEEEEeccCCCCceEEEecccC
Q 048012 402 EQLFLTGTSVERESTTGGLLCFYD-REKLEL-VSRVGISP---ACSVVQCAWHPKLNQIFATAGDKSQGGTHILYDPRL 475 (616)
Q Consensus 402 g~~l~~gs~~~~~~~~dg~i~iwd-~~~~~~-~~~~~~~~---~~~v~~~~~~p~~~~l~~~~~d~~~~~~~~v~~~~~ 475 (616)
+.|++.- .+|.|.+|| ..+.+. +..+.... -..+..++|.|...-+++.+.. ...++++|++..
T Consensus 208 ~nY~cs~--------~dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~R--dS~tIrlydi~~ 276 (783)
T KOG1008|consen 208 PNYFCSN--------SDGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSR--DSITIRLYDICV 276 (783)
T ss_pred CCceecc--------ccCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhcc--CcceEEEecccc
Confidence 7777765 589999999 443332 22221111 1248999999987666665553 267788888653
No 328
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.21 E-value=0.00048 Score=70.54 Aligned_cols=287 Identities=14% Similarity=0.155 Sum_probs=143.0
Q ss_pred CCCCCEEEEE---------EcCCcEEEEeCCCCccccccceecCCCCCCceEEEEecCCCCeEEEEeCCCeEEEEECCCC
Q 048012 158 DHSGSRVLSG---------SYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSDRFLCVTGSAQAKIYDRDGL 228 (616)
Q Consensus 158 sp~g~~lasg---------s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~s~d~~v~vwd~~~~ 228 (616)
|||+++++.. +..+.+.|||+.+.. ...+... ...+....|||+|+.++.+. ++.|.+++..+.
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~-----~~~l~~~-~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~ 73 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGE-----ITPLTPP-PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATG 73 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTE-----EEESS-E-ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTS
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCc-----eEECcCC-ccccccceeecCCCeeEEEe-cCceEEEECCCC
Confidence 5778777763 234678999998742 2222221 45588999999999988775 578999988766
Q ss_pred eeeeEeeCc-eeEe-eccc--C-CCcccceEEEEEcCCCCCEEEEEeCCCCEEEE-------------------------
Q 048012 229 TLGEFVKGD-MYIR-DLKN--T-KGHICGLTCGEWHPKTKETILTSSEDGSLRIW------------------------- 278 (616)
Q Consensus 229 ~~~~~~~~~-~~~~-~~~~--~-~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iw------------------------- 278 (616)
....+.... ..+. -+.. . ..-...-..+-|+|++..+++.--.+..|+.+
T Consensus 74 ~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~ 153 (353)
T PF00930_consen 74 QETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGD 153 (353)
T ss_dssp EEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS
T ss_pred CeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCC
Confidence 543332211 0000 0000 0 00011224678999986444433333333333
Q ss_pred ----------ECCCccccceEEeeeccCCCCccEEEEEECCCCCeEEEEeC--C---CcEEEEeCCCCCCCCCceeeecC
Q 048012 279 ----------DVNEFKSQKQVIKPKLARPGRVAVTTCAWDCDGKCIAGGIG--D---GSIQVWNLKPGWGSRPDIHVEKG 343 (616)
Q Consensus 279 ----------d~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~g~~--d---g~I~iwd~~~~~~~~~~~~~~~~ 343 (616)
|+.+++.. .+............+..+.|.++++.|+..-. + ..|.++|..++. ...+. ...
T Consensus 154 ~np~v~l~v~~~~~~~~~-~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~--~~~~~-~e~ 229 (353)
T PF00930_consen 154 PNPRVSLFVVDLASGKTT-ELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGE--TRVVL-EET 229 (353)
T ss_dssp ---EEEEEEEESSSTCCC-EE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTT--CEEEE-EEE
T ss_pred cCCceEEEEEECCCCcEE-EeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCc--eeEEE-Eec
Confidence 33322211 11111000112235788899999884443322 2 246777887652 12222 222
Q ss_pred CCCCe---EEEEEc-CCCC-eEEEEecCCcEEEEeCCCCCCcceEecCCCCCCccee-EEECCCCCEEEEeeccccccCC
Q 048012 344 HSDDI---TALKFS-SDGR-ILLSRSFDGSLKVWDLRKMKEPLKVFEDLPNNYAQTN-VAFSPDEQLFLTGTSVERESTT 417 (616)
Q Consensus 344 h~~~V---~~l~~s-pdg~-~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~v~~-v~fspdg~~l~~gs~~~~~~~~ 417 (616)
....| ..+.|. +++. +|.....||.-+||-+.......+.+. .....|.. +.|+++++.|+.-+... ...
T Consensus 230 ~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~~~lT--~G~~~V~~i~~~d~~~~~iyf~a~~~--~p~ 305 (353)
T PF00930_consen 230 SDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKPRQLT--SGDWEVTSILGWDEDNNRIYFTANGD--NPG 305 (353)
T ss_dssp SSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEEEESS---SSS-EEEEEEEECTSSEEEEEESSG--GTT
T ss_pred CCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEcccccceeccc--cCceeecccceEcCCCCEEEEEecCC--CCC
Confidence 22333 356664 6555 444555677655554443333233332 23344644 77888877766444211 012
Q ss_pred CceEEEEeCCCCceEEEEecCCCCCeEEEEEcCCCCcEEEEec
Q 048012 418 GGLLCFYDREKLELVSRVGISPACSVVQCAWHPKLNQIFATAG 460 (616)
Q Consensus 418 dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~ 460 (616)
...|+..++..+..+..+..... .-..+.|+|++++++..++
T Consensus 306 ~r~lY~v~~~~~~~~~~LT~~~~-~~~~~~~Spdg~y~v~~~s 347 (353)
T PF00930_consen 306 ERHLYRVSLDSGGEPKCLTCEDG-DHYSASFSPDGKYYVDTYS 347 (353)
T ss_dssp SBEEEEEETTETTEEEESSTTSS-TTEEEEE-TTSSEEEEEEE
T ss_pred ceEEEEEEeCCCCCeEeccCCCC-CceEEEECCCCCEEEEEEc
Confidence 44666667773344455543222 1258888888888887776
No 329
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.19 E-value=3.3e-05 Score=82.42 Aligned_cols=184 Identities=14% Similarity=0.156 Sum_probs=127.6
Q ss_pred CCCeEEEEeCCCeEEEEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEEEECCCcccc
Q 048012 207 TSDRFLCVTGSAQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQ 286 (616)
Q Consensus 207 ~g~~l~~~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~ 286 (616)
.+..++.|+-...+..+|+.+.+.... ..-....|.-++.+ ..++.+|...|+|.+-|.++.+.+
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~------------~~v~a~~v~imR~N---nr~lf~G~t~G~V~LrD~~s~~~i 210 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRT------------TNVSASGVTIMRYN---NRNLFCGDTRGTVFLRDPNSFETI 210 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeee------------eeccCCceEEEEec---CcEEEeecccceEEeecCCcCcee
Confidence 345566677777777888876654221 12222346666654 258999999999999999987777
Q ss_pred ceEEeeeccCCCCccEEEEEECCCCCeEEEEeC---------CCcEEEEeCCCCCCCCCceeeecCCCCCeEEEEEcCC-
Q 048012 287 KQVIKPKLARPGRVAVTTCAWDCDGKCIAGGIG---------DGSIQVWNLKPGWGSRPDIHVEKGHSDDITALKFSSD- 356 (616)
Q Consensus 287 ~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~g~~---------dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~spd- 356 (616)
+.+. .|...|.. |+-.|++|++++. |..|.+||+|.. ..+..+.-+.++ .-+.|+|.
T Consensus 211 ht~~------aHs~siSD--fDv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmm----ral~PI~~~~~P-~flrf~Psl 277 (1118)
T KOG1275|consen 211 HTFD------AHSGSISD--FDVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMM----RALSPIQFPYGP-QFLRFHPSL 277 (1118)
T ss_pred eeee------ccccceee--eeccCCeEEEeecccccccccccchhhhhhhhhh----hccCCcccccCc-hhhhhcccc
Confidence 6664 34445554 5567898888875 556899999974 333333334333 56778884
Q ss_pred CCeEEEEecCCcEEEEeCCCCCCc-ceEecCCCCCCcceeEEECCCCCEEEEeeccccccCCCceEEEEe
Q 048012 357 GRILLSRSFDGSLKVWDLRKMKEP-LKVFEDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYD 425 (616)
Q Consensus 357 g~~l~s~s~Dg~v~lwd~~~~~~~-~~~~~~~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd 425 (616)
...+++++..|.+.+-|..+...+ ..++..++....+..+++|+++..|+.|. .+|.|.+|.
T Consensus 278 ~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd-------~~g~v~~wa 340 (1118)
T KOG1275|consen 278 TTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGD-------HEGHVNLWA 340 (1118)
T ss_pred cceEEEEecccceeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEec-------ccCcEeeec
Confidence 457888888999999995443333 44444455556699999999999999999 899999998
No 330
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.17 E-value=7.8e-05 Score=78.81 Aligned_cols=167 Identities=16% Similarity=0.181 Sum_probs=110.1
Q ss_pred ceEEecCCcccEEEEEECCC-------------CCEEEEEEcCCcEEEEeCCCCccccccceecCCCCCCceEEEEecCC
Q 048012 141 NEIVLKGHTKIVSALAVDHS-------------GSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPT 207 (616)
Q Consensus 141 ~~~~l~~H~~~V~~v~~sp~-------------g~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~ 207 (616)
..+.|..|.+.|.-..+.-. |.+++|||.||+|.|-.+-+...... ..-..++.+++++|+
T Consensus 50 ~~~~~GtH~g~v~~~~~~~~~~~~~~~s~~~~~Gey~asCS~DGkv~I~sl~~~~~~~~------~df~rpiksial~Pd 123 (846)
T KOG2066|consen 50 KFFALGTHRGAVYLTTCQGNPKTNFDHSSSILEGEYVASCSDDGKVVIGSLFTDDEITQ------YDFKRPIKSIALHPD 123 (846)
T ss_pred ceeeeccccceEEEEecCCcccccccccccccCCceEEEecCCCcEEEeeccCCcccee------EecCCcceeEEeccc
Confidence 35578889988888877655 99999999999999988765432110 112345999999998
Q ss_pred -----CCeEEEEeCCCeEEEEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEEEECCC
Q 048012 208 -----SDRFLCVTGSAQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNE 282 (616)
Q Consensus 208 -----g~~l~~~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~ 282 (616)
.+++++|+.-| +.++...=..- +.-..+..-.+.|.++.|.- ++++-++.+| |+|||+..
T Consensus 124 ~~~~~sk~fv~GG~ag-lvL~er~wlgn----------k~~v~l~~~eG~I~~i~W~g---~lIAWand~G-v~vyd~~~ 188 (846)
T KOG2066|consen 124 FSRQQSKQFVSGGMAG-LVLSERNWLGN----------KDSVVLSEGEGPIHSIKWRG---NLIAWANDDG-VKVYDTPT 188 (846)
T ss_pred hhhhhhhheeecCcce-EEEehhhhhcC----------ccceeeecCccceEEEEecC---cEEEEecCCC-cEEEeccc
Confidence 56788888777 77776431110 01112344567899999973 5888888777 99999988
Q ss_pred ccccceEEeeeccCCCCccEEEEEECCCCCeEEEEeCCCcEEEEeCCC
Q 048012 283 FKSQKQVIKPKLARPGRVAVTTCAWDCDGKCIAGGIGDGSIQVWNLKP 330 (616)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~g~~dg~I~iwd~~~ 330 (616)
.+.+..+..+............+.|.++. .|+.|- .-+|+|..++.
T Consensus 189 ~~~l~~i~~p~~~~R~e~fpphl~W~~~~-~LVIGW-~d~v~i~~I~~ 234 (846)
T KOG2066|consen 189 RQRLTNIPPPSQSVRPELFPPHLHWQDED-RLVIGW-GDSVKICSIKK 234 (846)
T ss_pred cceeeccCCCCCCCCcccCCCceEecCCC-eEEEec-CCeEEEEEEec
Confidence 76655554433211111123456787654 455554 34788888873
No 331
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.16 E-value=0.00031 Score=74.19 Aligned_cols=93 Identities=18% Similarity=0.196 Sum_probs=59.5
Q ss_pred CcEEEEeCCC----CCCcceEecCCCCCCcceeEEECCCCCEEEEeeccccccCCCceEEEEeCCCCce-----------
Q 048012 367 GSLKVWDLRK----MKEPLKVFEDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREKLEL----------- 431 (616)
Q Consensus 367 g~v~lwd~~~----~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~~~~----------- 431 (616)
++|.+.|.++ ....+..+ +-......+.++|||+++++++. .++.|.|+|+.+.+.
T Consensus 296 n~V~VID~~t~~~~~~~v~~yI---PVGKsPHGV~vSPDGkylyVank------lS~tVSVIDv~k~k~~~~~~~~~~~~ 366 (635)
T PRK02888 296 SKVPVVDGRKAANAGSALTRYV---PVPKNPHGVNTSPDGKYFIANGK------LSPTVTVIDVRKLDDLFDGKIKPRDA 366 (635)
T ss_pred CEEEEEECCccccCCcceEEEE---ECCCCccceEECCCCCEEEEeCC------CCCcEEEEEChhhhhhhhccCCccce
Confidence 4577777665 22222222 22233677999999999999874 689999999988663
Q ss_pred -EEEEecCCCCCeEEEEEcCCCCcEEEEeccCCCCceEEEeccc
Q 048012 432 -VSRVGISPACSVVQCAWHPKLNQIFATAGDKSQGGTHILYDPR 474 (616)
Q Consensus 432 -~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~~~~~~~v~~~~ 474 (616)
+.++.+ +-.....+|.++++ .+++.- .+..+..|++.
T Consensus 367 vvaevev--GlGPLHTaFDg~G~-aytslf---~dsqv~kwn~~ 404 (635)
T PRK02888 367 VVAEPEL--GLGPLHTAFDGRGN-AYTTLF---LDSQIVKWNIE 404 (635)
T ss_pred EEEeecc--CCCcceEEECCCCC-EEEeEe---ecceeEEEehH
Confidence 444433 23356778999986 444433 15667777744
No 332
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=98.15 E-value=0.00017 Score=73.97 Aligned_cols=249 Identities=15% Similarity=0.185 Sum_probs=130.3
Q ss_pred ceEEEEecCCCCeEEEEeCCCeEEEEECCCCeeee-------Ee---------eCceeEeec---------------ccC
Q 048012 198 QVRNLSWSPTSDRFLCVTGSAQAKIYDRDGLTLGE-------FV---------KGDMYIRDL---------------KNT 246 (616)
Q Consensus 198 ~v~~l~~sp~g~~l~~~s~d~~v~vwd~~~~~~~~-------~~---------~~~~~~~~~---------------~~~ 246 (616)
.|..+.|+++...|+++..+|.|.||.+....... .. .....+.++ ..+
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 38899999999999999999999999865332211 00 001111111 122
Q ss_pred CCcccceEEEEEcCCCCCEEEEEeCCCCEEEEECCCccccceEEeee--ccCCCCccEEEEEECC-----CC---CeEEE
Q 048012 247 KGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKPK--LARPGRVAVTTCAWDC-----DG---KCIAG 316 (616)
Q Consensus 247 ~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~--~~~~~~~~v~~~~~sp-----~g---~~l~~ 316 (616)
....+.|++++.+.-| +++.|..+|.|.|.|++....+....... ........|+++.|.- |+ -+|++
T Consensus 83 ~~~~g~vtal~~S~iG--Fvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~v 160 (395)
T PF08596_consen 83 DAKQGPVTALKNSDIG--FVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLV 160 (395)
T ss_dssp ---S-SEEEEEE-BTS--EEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEE
T ss_pred eccCCcEeEEecCCCc--EEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEE
Confidence 3346789999988654 89999999999999997655443321111 1122344678887752 33 47899
Q ss_pred EeCCCcEEEEeCCC-CCC--CCCceeeecCCCCCeEEEE-EcCC-C-------------------CeEEEEecCCcEEEE
Q 048012 317 GIGDGSIQVWNLKP-GWG--SRPDIHVEKGHSDDITALK-FSSD-G-------------------RILLSRSFDGSLKVW 372 (616)
Q Consensus 317 g~~dg~I~iwd~~~-~~~--~~~~~~~~~~h~~~V~~l~-~spd-g-------------------~~l~s~s~Dg~v~lw 372 (616)
|+..|.+.+|.+.- ... ..........+.+.|..|. |+.+ | +-++....+..++++
T Consensus 161 GTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~ 240 (395)
T PF08596_consen 161 GTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRVF 240 (395)
T ss_dssp EETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE
T ss_pred EeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEEE
Confidence 99999999998752 100 0011122234666666665 3221 1 123334447789999
Q ss_pred eCCCCCCcceEecCCCCCCcceeEEEC-----CCCCEEEEeeccccccCCCceEEEEeCCCCceEEEEecCCC---CCeE
Q 048012 373 DLRKMKEPLKVFEDLPNNYAQTNVAFS-----PDEQLFLTGTSVERESTTGGLLCFYDREKLELVSRVGISPA---CSVV 444 (616)
Q Consensus 373 d~~~~~~~~~~~~~~~~~~~v~~v~fs-----pdg~~l~~gs~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~---~~v~ 444 (616)
.+-+.+...+.+. .......+++- ..+..|++-. .+|.|++|.+...+.+..+..... ..+.
T Consensus 241 ~~~~~k~~~K~~~---~~~~~~~~~vv~~~~~~~~~~Lv~l~-------~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~ 310 (395)
T PF08596_consen 241 KPPKSKGAHKSFD---DPFLCSSASVVPTISRNGGYCLVCLF-------NNGSIRIYSLPSLKEIKSVSLPPPLDSRRLS 310 (395)
T ss_dssp -TT---EEEEE-S---S-EEEEEEEEEEEE-EEEEEEEEEEE-------TTSEEEEEETTT--EEEEEE-SS---HHHHT
T ss_pred eCCCCcccceeec---cccccceEEEEeecccCCceEEEEEE-------CCCcEEEEECCCchHhhcccCCCcccccccc
Confidence 9887655444442 21223344452 3456666666 899999999999999988876421 1233
Q ss_pred EEEEcCCCCcEEEE
Q 048012 445 QCAWHPKLNQIFAT 458 (616)
Q Consensus 445 ~~~~~p~~~~l~~~ 458 (616)
.+.+.++|..++..
T Consensus 311 ~ssis~~Gdi~~~~ 324 (395)
T PF08596_consen 311 SSSISRNGDIFYWT 324 (395)
T ss_dssp T-EE-TTS-EEEE-
T ss_pred ccEECCCCCEEEEe
Confidence 44556665544433
No 333
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.15 E-value=2.6e-05 Score=82.40 Aligned_cols=109 Identities=26% Similarity=0.432 Sum_probs=84.8
Q ss_pred EEEEEcCCCCCEEEEEeC----CCCEEEEECCCccccceEEeeeccCCCCccEEEEEECCCCCeEEEEeCCCcEEEEeCC
Q 048012 254 TCGEWHPKTKETILTSSE----DGSLRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWDCDGKCIAGGIGDGSIQVWNLK 329 (616)
Q Consensus 254 ~~~~~~p~~~~~l~s~s~----Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~g~~dg~I~iwd~~ 329 (616)
+-..|||..+ +|++++. .|+|.||- .++.....+..+. .+++++|+|..-.|+.|-.-|.+.+|...
T Consensus 19 ti~SWHPseP-lfAVA~fS~er~GSVtIfa-dtGEPqr~Vt~P~-------hatSLCWHpe~~vLa~gwe~g~~~v~~~~ 89 (1416)
T KOG3617|consen 19 TISSWHPSEP-LFAVASFSPERGGSVTIFA-DTGEPQRDVTYPV-------HATSLCWHPEEFVLAQGWEMGVSDVQKTN 89 (1416)
T ss_pred cccccCCCCc-eeEEEEecCCCCceEEEEe-cCCCCCcccccce-------ehhhhccChHHHHHhhccccceeEEEecC
Confidence 3457999764 7777653 57788874 3444443333222 57889999999999999999999999977
Q ss_pred CCCCCCCceeeecCCCCCeEEEEEcCCCCeEEEEecCCcEEEEeCC
Q 048012 330 PGWGSRPDIHVEKGHSDDITALKFSSDGRILLSRSFDGSLKVWDLR 375 (616)
Q Consensus 330 ~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~v~lwd~~ 375 (616)
.. ........|..+|..+.||++|..|+++..-|.|.+|...
T Consensus 90 ~~----e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 90 TT----ETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred Cc----eeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 53 4555567899999999999999999999999999999775
No 334
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.14 E-value=6.3e-05 Score=73.25 Aligned_cols=166 Identities=14% Similarity=0.175 Sum_probs=110.3
Q ss_pred EEEEECCCccccceEEeeeccCCCCccEEEEEECCCCC-eEEEEeCCCcEEEEeCCCCCCCCCceeeecCCCCCeEEEEE
Q 048012 275 LRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWDCDGK-CIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHSDDITALKF 353 (616)
Q Consensus 275 v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~-~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~ 353 (616)
|++.+-.+.+... +. ..+...|..++|+|..+ ++..++.+..|.|.|+++. ..+..+..| ..+++++|
T Consensus 175 v~~l~~~~fkssq-~l-----p~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~----~~vssy~a~-~~~wSC~w 243 (463)
T KOG1645|consen 175 VQKLESHDFKSSQ-IL-----PGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETS----CVVSSYIAY-NQIWSCCW 243 (463)
T ss_pred eEEeccCCcchhh-cc-----cccchhhhhhccCccccceeeeeccCceEEEEecccc----eeeeheecc-CCceeeee
Confidence 6666655554433 21 23333799999999877 7888999999999999975 567777777 78999999
Q ss_pred cCCC-CeEEEEecCCcEEEEeCCCCCCcceEecCCCCCCcceeEEE------CCCCCEEEEeeccccccCCCceEEEEeC
Q 048012 354 SSDG-RILLSRSFDGSLKVWDLRKMKEPLKVFEDLPNNYAQTNVAF------SPDEQLFLTGTSVERESTTGGLLCFYDR 426 (616)
Q Consensus 354 spdg-~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~v~~v~f------spdg~~l~~gs~~~~~~~~dg~i~iwd~ 426 (616)
.-|. ++|+.|-..|.|.|||++....++..+.......+|..++. .+.|.+|+... -.+.+|+.
T Consensus 244 Dlde~h~IYaGl~nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~l---------t~l~f~ei 314 (463)
T KOG1645|consen 244 DLDERHVIYAGLQNGMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFAL---------TVLQFYEI 314 (463)
T ss_pred ccCCcceeEEeccCceEEEEEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeee---------hhhhhhhh
Confidence 9865 56667778999999999987766655544323333444333 33455555444 22456664
Q ss_pred C--CCceEEEEecCCCCCeEEEEEcCCCCcEEEEec
Q 048012 427 E--KLELVSRVGISPACSVVQCAWHPKLNQIFATAG 460 (616)
Q Consensus 427 ~--~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~ 460 (616)
. .......+.....+..+++..++..+.++++..
T Consensus 315 ~~s~~~~p~vlele~pG~cismqy~~~snh~l~tyR 350 (463)
T KOG1645|consen 315 VFSAECLPCVLELEPPGICISMQYHGVSNHLLLTYR 350 (463)
T ss_pred hccccCCCcccccCCCcceeeeeecCccceEEEEec
Confidence 3 223333334444567788888887777777665
No 335
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.05 E-value=0.0034 Score=65.44 Aligned_cols=236 Identities=10% Similarity=-0.001 Sum_probs=123.6
Q ss_pred CCEEEEEEcCCcEEEEeCCCCccccccceecCC-C-C---CCceE-EEEecCCCCeEEEEeCCCeEEEEECCCCe-eeeE
Q 048012 161 GSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEP-S-E---GHQVR-NLSWSPTSDRFLCVTGSAQAKIYDRDGLT-LGEF 233 (616)
Q Consensus 161 g~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~-~-~---~~~v~-~l~~sp~g~~l~~~s~d~~v~vwd~~~~~-~~~~ 233 (616)
+.+|++++.++.|.-+|..++....+.-..... . . ...+. .+. -.+..+++++.++.+..+|..+++ ++..
T Consensus 69 ~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~--v~~~~v~v~~~~g~l~ald~~tG~~~W~~ 146 (394)
T PRK11138 69 YNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVT--VAGGKVYIGSEKGQVYALNAEDGEVAWQT 146 (394)
T ss_pred CCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccE--EECCEEEEEcCCCEEEEEECCCCCCcccc
Confidence 446666667777777777665432221100000 0 0 00000 011 135677888889999999987554 3332
Q ss_pred eeCceeEeecccCCCcccceEE-EEEcCCCCCEEEEEeCCCCEEEEECCCccccceEEeeecc---CCCCccEEEEEECC
Q 048012 234 VKGDMYIRDLKNTKGHICGLTC-GEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLA---RPGRVAVTTCAWDC 309 (616)
Q Consensus 234 ~~~~~~~~~~~~~~~h~~~v~~-~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~---~~~~~~v~~~~~sp 309 (616)
.. .+ .+.+ .... + ..++.+..++.|..+|..+++........... .....++ .
T Consensus 147 ~~-----------~~---~~~ssP~v~--~-~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~----v-- 203 (394)
T PRK11138 147 KV-----------AG---EALSRPVVS--D-GLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPA----T-- 203 (394)
T ss_pred cC-----------CC---ceecCCEEE--C-CEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCE----E--
Confidence 11 11 1111 1111 2 36777888999999999988776655322100 0000111 1
Q ss_pred CCCeEEEEeCCCcEEEEeCCCCCCCCCcee-eec-CCC-CCeEEEEEcC--CCCeEEEEecCCcEEEEeCCCCCCcceEe
Q 048012 310 DGKCIAGGIGDGSIQVWNLKPGWGSRPDIH-VEK-GHS-DDITALKFSS--DGRILLSRSFDGSLKVWDLRKMKEPLKVF 384 (616)
Q Consensus 310 ~g~~l~~g~~dg~I~iwd~~~~~~~~~~~~-~~~-~h~-~~V~~l~~sp--dg~~l~s~s~Dg~v~lwd~~~~~~~~~~~ 384 (616)
.+..++.++.+|.|..+|..++........ ... .+. .....+..+| .+..|+.++.+|.+..+|+.+++...+.-
T Consensus 204 ~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~ 283 (394)
T PRK11138 204 AFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKRE 283 (394)
T ss_pred ECCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeec
Confidence 124567778899999999887731111000 000 000 0011111222 24567777789999999998765422211
Q ss_pred cCCCCCCcceeEEECCCCCEEEEeeccccccCCCceEEEEeCCCCceEEEE
Q 048012 385 EDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREKLELVSRV 435 (616)
Q Consensus 385 ~~~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~~~~~~~~ 435 (616)
... ...+. ..+..|+.++ .+|.|..+|..+++.+-+.
T Consensus 284 --~~~---~~~~~--~~~~~vy~~~-------~~g~l~ald~~tG~~~W~~ 320 (394)
T PRK11138 284 --YGS---VNDFA--VDGGRIYLVD-------QNDRVYALDTRGGVELWSQ 320 (394)
T ss_pred --CCC---ccCcE--EECCEEEEEc-------CCCeEEEEECCCCcEEEcc
Confidence 111 11222 2456677776 7899999999999876543
No 336
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.03 E-value=0.00071 Score=70.19 Aligned_cols=185 Identities=18% Similarity=0.304 Sum_probs=112.6
Q ss_pred CCceEEEEecCCCCeEEEEe---CC-CeEEEEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeC
Q 048012 196 GHQVRNLSWSPTSDRFLCVT---GS-AQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSE 271 (616)
Q Consensus 196 ~~~v~~l~~sp~g~~l~~~s---~d-~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~ 271 (616)
...+..-.|+|++..++..+ .. ..+.+++++....... ....++ -..-.|+|+++.++++...
T Consensus 192 ~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i----------~~~~g~---~~~P~fspDG~~l~f~~~r 258 (425)
T COG0823 192 GSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVI----------LNFNGN---NGAPAFSPDGSKLAFSSSR 258 (425)
T ss_pred CcceeccccCcCCCceEEEEEecCCCceEEEEeccCCcccee----------eccCCc---cCCccCCCCCCEEEEEECC
Confidence 34477788999998866553 22 4688888886653221 112232 2345799999888888888
Q ss_pred CCC--EEEEECCCccccceEEeeeccCCCCccEEEEEECCCCCeEEEEeC-CC--cEEEEeCCCCCCCCCceeeecCCCC
Q 048012 272 DGS--LRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWDCDGKCIAGGIG-DG--SIQVWNLKPGWGSRPDIHVEKGHSD 346 (616)
Q Consensus 272 Dg~--v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~g~~-dg--~I~iwd~~~~~~~~~~~~~~~~h~~ 346 (616)
|+. |.+.|+.... ...+... .+ .-+.=.|+|+|+.|+-.+. .| .|.++++... ....+.....
T Consensus 259 dg~~~iy~~dl~~~~-~~~Lt~~---~g---i~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~-----~~~riT~~~~ 326 (425)
T COG0823 259 DGSPDIYLMDLDGKN-LPRLTNG---FG---INTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGS-----QVTRLTFSGG 326 (425)
T ss_pred CCCccEEEEcCCCCc-ceecccC---Cc---cccCccCCCCCCEEEEEeCCCCCcceEEECCCCC-----ceeEeeccCC
Confidence 887 4555665543 1111111 11 1224579999998887664 34 3666676654 1223333333
Q ss_pred CeEEEEEcCCCCeEEEEecC-Cc--EEEEeCCCCCCcceEecCCCCCCcceeEEECCCCCEEEEee
Q 048012 347 DITALKFSSDGRILLSRSFD-GS--LKVWDLRKMKEPLKVFEDLPNNYAQTNVAFSPDEQLFLTGT 409 (616)
Q Consensus 347 ~V~~l~~spdg~~l~s~s~D-g~--v~lwd~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~gs 409 (616)
.-..-.|+|||++|+..+.. |. |.+.|+.+... .+.+. .......-.|.++++.+...+
T Consensus 327 ~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~-~~~lt---~~~~~e~ps~~~ng~~i~~~s 388 (425)
T COG0823 327 GNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGK-IRILT---STYLNESPSWAPNGRMIMFSS 388 (425)
T ss_pred CCcCccCCCCCCEEEEEeccCCceeeEEeccCCCCc-EEEcc---ccccCCCCCcCCCCceEEEec
Confidence 33377899999999988753 43 66677765443 33332 333355678899999888766
No 337
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=98.01 E-value=0.0048 Score=64.22 Aligned_cols=200 Identities=15% Similarity=0.124 Sum_probs=111.8
Q ss_pred eEEEEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEEEECCCccccceEEeeeccCC-
Q 048012 219 QAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARP- 297 (616)
Q Consensus 219 ~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~- 297 (616)
.|.||+..|..+.... ... ..|.++.|..+ ..|+....||+++++|+.... .+........
T Consensus 62 ~I~iys~sG~ll~~i~-----------w~~--~~iv~~~wt~~--e~LvvV~~dG~v~vy~~~G~~---~fsl~~~i~~~ 123 (410)
T PF04841_consen 62 SIQIYSSSGKLLSSIP-----------WDS--GRIVGMGWTDD--EELVVVQSDGTVRVYDLFGEF---QFSLGEEIEEE 123 (410)
T ss_pred EEEEECCCCCEeEEEE-----------ECC--CCEEEEEECCC--CeEEEEEcCCEEEEEeCCCce---eechhhhcccc
Confidence 4888888887764431 122 78999999885 467777899999999986332 2211111000
Q ss_pred --CCccEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCCCCCceeeec-------CCCCCeEEEEEcCCCCeEEEEecCCc
Q 048012 298 --GRVAVTTCAWDCDGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEK-------GHSDDITALKFSSDGRILLSRSFDGS 368 (616)
Q Consensus 298 --~~~~v~~~~~sp~g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~-------~h~~~V~~l~~spdg~~l~s~s~Dg~ 368 (616)
....+....+..+|-.++ ..++.|.+..--............. .+........++.+....+....++.
T Consensus 124 ~v~e~~i~~~~~~~~GivvL--t~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~ 201 (410)
T PF04841_consen 124 KVLECRIFAIWFYKNGIVVL--TGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGET 201 (410)
T ss_pred CcccccccccccCCCCEEEE--CCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCE
Confidence 001122223333553333 3455555443221100000000000 11111111335555666666666666
Q ss_pred EEEEeCCCCCCcceEecCCCCCCcceeEEECCCCCEEEEeeccccccCCCceEEEEeCCCCceEEEEecCCCCCeEEEEE
Q 048012 369 LKVWDLRKMKEPLKVFEDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREKLELVSRVGISPACSVVQCAW 448 (616)
Q Consensus 369 v~lwd~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~ 448 (616)
+.+.+-..... .....++..+++||++++||.-+ .+|.+.|....-.+.+..+.........++.|
T Consensus 202 i~~i~~~~~~~-------i~~~~~i~~iavSpng~~iAl~t-------~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~W 267 (410)
T PF04841_consen 202 IYIIDENSFKQ-------IDSDGPIIKIAVSPNGKFIALFT-------DSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAW 267 (410)
T ss_pred EEEEEcccccc-------ccCCCCeEEEEECCCCCEEEEEE-------CCCCEEEEECcccceeEEeecCcCCCCcEEEE
Confidence 66554332211 22234699999999999999998 78999999877777777777655567788888
Q ss_pred cCCC
Q 048012 449 HPKL 452 (616)
Q Consensus 449 ~p~~ 452 (616)
.-+.
T Consensus 268 CG~d 271 (410)
T PF04841_consen 268 CGND 271 (410)
T ss_pred ECCC
Confidence 7663
No 338
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.96 E-value=0.0027 Score=66.22 Aligned_cols=164 Identities=14% Similarity=0.182 Sum_probs=89.9
Q ss_pred ceEEEEecCCCCeEEEEeCCCeEEEEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEE
Q 048012 198 QVRNLSWSPTSDRFLCVTGSAQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRI 277 (616)
Q Consensus 198 ~v~~l~~sp~g~~l~~~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~i 277 (616)
....+.++|+|+.+++ +++|.-.||....... ...+.....+|... +.+++-....+|.|
T Consensus 34 ~p~~ls~npngr~v~V-~g~geY~iyt~~~~r~-----------------k~~G~g~~~vw~~~--n~yAv~~~~~~I~I 93 (443)
T PF04053_consen 34 YPQSLSHNPNGRFVLV-CGDGEYEIYTALAWRN-----------------KAFGSGLSFVWSSR--NRYAVLESSSTIKI 93 (443)
T ss_dssp --SEEEE-TTSSEEEE-EETTEEEEEETTTTEE-----------------EEEEE-SEEEE-TS--SEEEEE-TTS-EEE
T ss_pred CCeeEEECCCCCEEEE-EcCCEEEEEEccCCcc-----------------cccCceeEEEEecC--ccEEEEECCCeEEE
Confidence 3788999999998886 7788888887433221 22344566788884 46788777899999
Q ss_pred EECCCccccceEEeeeccCCCCccEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCCCCCceeeecCCCCCeEEEEEcCCC
Q 048012 278 WDVNEFKSQKQVIKPKLARPGRVAVTTCAWDCDGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHSDDITALKFSSDG 357 (616)
Q Consensus 278 wd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~spdg 357 (616)
+.--+....+.+.... .+..+-. |.+|+..+.+ .|.+||+.++ ..+...... .|..|.|+++|
T Consensus 94 ~kn~~~~~~k~i~~~~-------~~~~If~---G~LL~~~~~~-~i~~yDw~~~----~~i~~i~v~--~vk~V~Ws~~g 156 (443)
T PF04053_consen 94 YKNFKNEVVKSIKLPF-------SVEKIFG---GNLLGVKSSD-FICFYDWETG----KLIRRIDVS--AVKYVIWSDDG 156 (443)
T ss_dssp EETTEE-TT-----SS--------EEEEE----SSSEEEEETT-EEEEE-TTT------EEEEESS---E-EEEEE-TTS
T ss_pred EEcCccccceEEcCCc-------ccceEEc---CcEEEEECCC-CEEEEEhhHc----ceeeEEecC--CCcEEEEECCC
Confidence 6322222222222211 2344432 8888877654 8999999975 566665533 38999999999
Q ss_pred CeEEEEecCCcEEEEeCCCC----------CCcceEecCCCCCCcceeEEECCC
Q 048012 358 RILLSRSFDGSLKVWDLRKM----------KEPLKVFEDLPNNYAQTNVAFSPD 401 (616)
Q Consensus 358 ~~l~s~s~Dg~v~lwd~~~~----------~~~~~~~~~~~~~~~v~~v~fspd 401 (616)
.+++..+.+ ++.|++.... ...+..+... ...|.+.+|..+
T Consensus 157 ~~val~t~~-~i~il~~~~~~~~~~~~~g~e~~f~~~~E~--~~~IkSg~W~~d 207 (443)
T PF04053_consen 157 ELVALVTKD-SIYILKYNLEAVAAIPEEGVEDAFELIHEI--SERIKSGCWVED 207 (443)
T ss_dssp SEEEEE-S--SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE---S--SEEEEETT
T ss_pred CEEEEEeCC-eEEEEEecchhcccccccCchhceEEEEEe--cceeEEEEEEcC
Confidence 999988854 6777765431 0012222221 234788888766
No 339
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.95 E-value=0.00081 Score=73.78 Aligned_cols=150 Identities=15% Similarity=0.166 Sum_probs=96.5
Q ss_pred EcCCCCCEEEEE-eCCCCEEEEECCCccccceEEeeeccCCCCccEEEEEECC-----CCCeEEEEeCCCcEEEEeCCCC
Q 048012 258 WHPKTKETILTS-SEDGSLRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWDC-----DGKCIAGGIGDGSIQVWNLKPG 331 (616)
Q Consensus 258 ~~p~~~~~l~s~-s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-----~g~~l~~g~~dg~I~iwd~~~~ 331 (616)
.+.....+|+.. .....|+-.|+..++.+....... ..+|..++-.. .....++|-.+..|..||.|-.
T Consensus 488 L~~~d~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~-----~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~ 562 (794)
T PF08553_consen 488 LHDQDRNMILLDPNNPNKLYKMDLERGKVVEEWKVHD-----DIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLS 562 (794)
T ss_pred hhccccceEeecCCCCCceEEEecCCCcEEEEeecCC-----CcceeEecccccccccCCCceEEEECCCceEEeccCCC
Confidence 333344454443 345778999998887665553322 11344443221 1234577888999999999964
Q ss_pred CCCCCceee---ecCCCCCeEEEEEcCCCCeEEEEecCCcEEEEeCCCCCCcceEecCCCCCCcceeEEECCCCCEEEEe
Q 048012 332 WGSRPDIHV---EKGHSDDITALKFSSDGRILLSRSFDGSLKVWDLRKMKEPLKVFEDLPNNYAQTNVAFSPDEQLFLTG 408 (616)
Q Consensus 332 ~~~~~~~~~---~~~h~~~V~~l~~spdg~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~g 408 (616)
. .+++.. ........+|++-+.+| +||+|+.+|.|||||- .+......+.+ -+.+|..|..+.||++|++.
T Consensus 563 ~--~k~v~~~~k~Y~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~-~g~~AKT~lp~--lG~pI~~iDvt~DGkwilaT 636 (794)
T PF08553_consen 563 G--NKLVDSQSKQYSSKNNFSCFATTEDG-YIAVGSNKGDIRLYDR-LGKRAKTALPG--LGDPIIGIDVTADGKWILAT 636 (794)
T ss_pred C--CceeeccccccccCCCceEEEecCCc-eEEEEeCCCcEEeecc-cchhhhhcCCC--CCCCeeEEEecCCCcEEEEe
Confidence 1 222211 11233557888888777 7899999999999994 33433333333 24679999999999999987
Q ss_pred eccccccCCCceEEEEeC
Q 048012 409 TSVERESTTGGLLCFYDR 426 (616)
Q Consensus 409 s~~~~~~~~dg~i~iwd~ 426 (616)
+ +..|.|+++
T Consensus 637 c--------~tyLlLi~t 646 (794)
T PF08553_consen 637 C--------KTYLLLIDT 646 (794)
T ss_pred e--------cceEEEEEE
Confidence 6 567777775
No 340
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.95 E-value=0.014 Score=57.47 Aligned_cols=244 Identities=17% Similarity=0.192 Sum_probs=131.8
Q ss_pred CCCCEEEEEEcCCcEEEEeCCCCccccccceecCCCCCCceEEEEecCCCCeEEEEeCCCeEEEEECCCCeeeeEeeCce
Q 048012 159 HSGSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSDRFLCVTGSAQAKIYDRDGLTLGEFVKGDM 238 (616)
Q Consensus 159 p~g~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~s~d~~v~vwd~~~~~~~~~~~~~~ 238 (616)
..+++|+.|..+| |.++++....... .. .....|..+...++-+.|++.++ +.+.++++.......... ..
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~-~i-----~~~~~I~ql~vl~~~~~llvLsd-~~l~~~~L~~l~~~~~~~-~~ 75 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPT-RI-----LKLSSITQLSVLPELNLLLVLSD-GQLYVYDLDSLEPVSTSA-PL 75 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCccce-eE-----eecceEEEEEEecccCEEEEEcC-CccEEEEchhhccccccc-cc
Confidence 4678999999998 8999883211111 11 12223999999998888776654 999999988554322110 00
Q ss_pred eEe---ecccCCCcccceEEEE-EcCCCCCEEEEEeCCCCEEEEECCCcccc--ceEEeeeccCCCCccEEEEEECCCCC
Q 048012 239 YIR---DLKNTKGHICGLTCGE-WHPKTKETILTSSEDGSLRIWDVNEFKSQ--KQVIKPKLARPGRVAVTTCAWDCDGK 312 (616)
Q Consensus 239 ~~~---~~~~~~~h~~~v~~~~-~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~--~~~~~~~~~~~~~~~v~~~~~sp~g~ 312 (616)
... ...........+...+ -........+......+|.+|........ ..+...... ..+.+++|. ++
T Consensus 76 ~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp----~~~~~i~~~--~~ 149 (275)
T PF00780_consen 76 AFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISLP----DPPSSIAFL--GN 149 (275)
T ss_pred cccccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEcC----CCcEEEEEe--CC
Confidence 000 0000111222333333 11222234444455568999887653211 111111111 267888888 67
Q ss_pred eEEEEeCCCcEEEEeCCCCCCCCCceeeecC----------CCCCeEEEEEcCCCCeEEEEecCCcEEEEeCCCCCCcc-
Q 048012 313 CIAGGIGDGSIQVWNLKPGWGSRPDIHVEKG----------HSDDITALKFSSDGRILLSRSFDGSLKVWDLRKMKEPL- 381 (616)
Q Consensus 313 ~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~----------h~~~V~~l~~spdg~~l~s~s~Dg~v~lwd~~~~~~~~- 381 (616)
.|+.|..+ ...+.|+.++. ...+..... ...++..+... ++.+|++ .|..-.+.|.. +....
T Consensus 150 ~i~v~~~~-~f~~idl~~~~--~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~e~Ll~--~~~~g~fv~~~-G~~~r~ 222 (275)
T PF00780_consen 150 KICVGTSK-GFYLIDLNTGS--PSELLDPSDSSSSFKSRNSSSKPLGIFQLS-DNEFLLC--YDNIGVFVNKN-GEPSRK 222 (275)
T ss_pred EEEEEeCC-ceEEEecCCCC--ceEEeCccCCcchhhhcccCCCceEEEEeC-CceEEEE--ecceEEEEcCC-CCcCcc
Confidence 78888754 47888988652 111111111 11234444443 4556654 34444555554 22211
Q ss_pred eEecCCCCCCcceeEEECCCCCEEEEeeccccccCCCceEEEEeCCCCceEEEEec
Q 048012 382 KVFEDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREKLELVSRVGI 437 (616)
Q Consensus 382 ~~~~~~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~~~~~~~~~~ 437 (616)
..+.. ...+.++++ ...||++.. ++.|.||++.++++++.+..
T Consensus 223 ~~i~W---~~~p~~~~~--~~pyli~~~--------~~~iEV~~~~~~~lvQ~i~~ 265 (275)
T PF00780_consen 223 STIQW---SSAPQSVAY--SSPYLIAFS--------SNSIEVRSLETGELVQTIPL 265 (275)
T ss_pred cEEEc---CCchhEEEE--ECCEEEEEC--------CCEEEEEECcCCcEEEEEEC
Confidence 12221 123566666 456888775 46699999999999999865
No 341
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.87 E-value=0.0016 Score=67.68 Aligned_cols=189 Identities=20% Similarity=0.174 Sum_probs=114.2
Q ss_pred CcccceEEEEEcCCCCCEEEEEeCC---CCEEEEECCCccccceEEeeeccCCCCccEEEEEECCCCCeEEEE-eCCCc-
Q 048012 248 GHICGLTCGEWHPKTKETILTSSED---GSLRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWDCDGKCIAGG-IGDGS- 322 (616)
Q Consensus 248 ~h~~~v~~~~~~p~~~~~l~s~s~D---g~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~g-~~dg~- 322 (616)
.-...+..-+|+|++..+....-.. ..+.++|+.+++........ + .-..-.|+|+|+.|+.. ..||.
T Consensus 190 ~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~----g---~~~~P~fspDG~~l~f~~~rdg~~ 262 (425)
T COG0823 190 DSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFN----G---NNGAPAFSPDGSKLAFSSSRDGSP 262 (425)
T ss_pred ccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccC----C---ccCCccCCCCCCEEEEEECCCCCc
Confidence 3344566778999886554443322 35999999887654433211 1 22345799999976654 45665
Q ss_pred -EEEEeCCCCCCCCCceeeecCCCCCeEEEEEcCCCCeEEEEec-CCc--EEEEeCCCCCCcceEecCCCCCCcceeEEE
Q 048012 323 -IQVWNLKPGWGSRPDIHVEKGHSDDITALKFSSDGRILLSRSF-DGS--LKVWDLRKMKEPLKVFEDLPNNYAQTNVAF 398 (616)
Q Consensus 323 -I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~-Dg~--v~lwd~~~~~~~~~~~~~~~~~~~v~~v~f 398 (616)
|+++|+.+. . ...+..-.+.-+.=.|+|||++|+-.+. .|. |.++|+..... ..+...... -..-.|
T Consensus 263 ~iy~~dl~~~--~---~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~--~riT~~~~~--~~~p~~ 333 (425)
T COG0823 263 DIYLMDLDGK--N---LPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV--TRLTFSGGG--NSNPVW 333 (425)
T ss_pred cEEEEcCCCC--c---ceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce--eEeeccCCC--CcCccC
Confidence 566677664 1 2223322233336789999999887764 343 66666664332 222222122 226789
Q ss_pred CCCCCEEEEeeccccccCCCce--EEEEeCCCCceEEEEecCCCCCeEEEEEcCCCCcEEEEec
Q 048012 399 SPDEQLFLTGTSVERESTTGGL--LCFYDREKLELVSRVGISPACSVVQCAWHPKLNQIFATAG 460 (616)
Q Consensus 399 spdg~~l~~gs~~~~~~~~dg~--i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~ 460 (616)
+|||++|+..+. .+|. |.++|+.++..++.+. .......-.|.+++..|+..+.
T Consensus 334 SpdG~~i~~~~~------~~g~~~i~~~~~~~~~~~~~lt--~~~~~e~ps~~~ng~~i~~~s~ 389 (425)
T COG0823 334 SPDGDKIVFESS------SGGQWDIDKNDLASGGKIRILT--STYLNESPSWAPNGRMIMFSSG 389 (425)
T ss_pred CCCCCEEEEEec------cCCceeeEEeccCCCCcEEEcc--ccccCCCCCcCCCCceEEEecc
Confidence 999999998873 2344 7777777766544442 2233455678888888877775
No 342
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.87 E-value=0.00021 Score=74.74 Aligned_cols=113 Identities=20% Similarity=0.212 Sum_probs=82.9
Q ss_pred EEcCCCCCEEEEEeCCCCEEEEECCCccccceEEeeeccCCCCccEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCCCCC
Q 048012 257 EWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWDCDGKCIAGGIGDGSIQVWNLKPGWGSRP 336 (616)
Q Consensus 257 ~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~g~~dg~I~iwd~~~~~~~~~ 336 (616)
++...+ .+++.|+.-|.|++|+-..+....... .+..+.+..++.+++..++|+|+..|.|.++-++... ...
T Consensus 40 c~dst~-~~l~~GsS~G~lyl~~R~~~~~~~~~~-----~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~-p~~ 112 (726)
T KOG3621|consen 40 CVDATE-EYLAMGSSAGSVYLYNRHTGEMRKLKN-----EGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKEL-PRD 112 (726)
T ss_pred EeecCC-ceEEEecccceEEEEecCchhhhcccc-----cCccceEEEEEecchhHhhhhhcCCceEEeehhhccC-CCc
Confidence 344434 589999999999999976544322111 1233356677889999999999999999999887742 222
Q ss_pred ceeee---cCCCCCeEEEEEcCCCCeEEEEecCCcEEEEeCCC
Q 048012 337 DIHVE---KGHSDDITALKFSSDGRILLSRSFDGSLKVWDLRK 376 (616)
Q Consensus 337 ~~~~~---~~h~~~V~~l~~spdg~~l~s~s~Dg~v~lwd~~~ 376 (616)
.+... ..|...|++++|++++..|++|...|+|.+-.+..
T Consensus 113 ~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 113 LDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred ceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence 22221 23678899999999999999999999999988775
No 343
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.85 E-value=0.0049 Score=58.85 Aligned_cols=200 Identities=13% Similarity=0.135 Sum_probs=111.7
Q ss_pred CCCcccceEEEEEcCCCCCEEEEEeCCCCEEEEECCCccccceEEeeeccCCCCccEEEEEECCCCCeEEEEeCCCcEEE
Q 048012 246 TKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWDCDGKCIAGGIGDGSIQV 325 (616)
Q Consensus 246 ~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~g~~dg~I~i 325 (616)
+.+-...+..+.|+|+.+.++++....+.|...+.. ++.+..+.. .+....-.+++.-++.++++.-.++.|.+
T Consensus 17 l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~l-----~g~~D~EgI~y~g~~~~vl~~Er~~~L~~ 90 (248)
T PF06977_consen 17 LPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIPL-----DGFGDYEGITYLGNGRYVLSEERDQRLYI 90 (248)
T ss_dssp -TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEEE------SS-SSEEEEEE-STTEEEEEETTTTEEEE
T ss_pred CCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEeC-----CCCCCceeEEEECCCEEEEEEcCCCcEEE
Confidence 455566799999999877788888888888888864 444333322 11225778888888877777666899999
Q ss_pred EeCCCCCCCCCc--eeee-----cCCCCCeEEEEEcCCCCeEEEEecCCcEEEEeCCC--CCCcceEec------CCCCC
Q 048012 326 WNLKPGWGSRPD--IHVE-----KGHSDDITALKFSSDGRILLSRSFDGSLKVWDLRK--MKEPLKVFE------DLPNN 390 (616)
Q Consensus 326 wd~~~~~~~~~~--~~~~-----~~h~~~V~~l~~spdg~~l~s~s~Dg~v~lwd~~~--~~~~~~~~~------~~~~~ 390 (616)
+++......... +..+ ..+...+-.|+|.+.++.|+.+-...-..||.++. ....+.... .....
T Consensus 91 ~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (248)
T PF06977_consen 91 FTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFV 170 (248)
T ss_dssp EEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--S
T ss_pred EEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeecccccccccccee
Confidence 998443111111 1111 13445689999999888888887777777777764 111111111 01122
Q ss_pred CcceeEEECCCCCEEEEeeccccccCCCceEEEEeCCCCceEEEEecCCC--------CCeEEEEEcCCCCcEEEE
Q 048012 391 YAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREKLELVSRVGISPA--------CSVVQCAWHPKLNQIFAT 458 (616)
Q Consensus 391 ~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~--------~~v~~~~~~p~~~~l~~~ 458 (616)
..+..++|+|....|+.-+. ....|.++| .+|+.+..+..... ...-.|+|.++|+..+++
T Consensus 171 ~d~S~l~~~p~t~~lliLS~------es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvs 239 (248)
T PF06977_consen 171 RDLSGLSYDPRTGHLLILSD------ESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVS 239 (248)
T ss_dssp S---EEEEETTTTEEEEEET------TTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEE
T ss_pred ccccceEEcCCCCeEEEEEC------CCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEc
Confidence 34788999997554444442 788899999 77888777765431 246789999987544444
No 344
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.81 E-value=0.01 Score=60.99 Aligned_cols=250 Identities=14% Similarity=0.093 Sum_probs=126.9
Q ss_pred cEEEEEECCCCCEEEEEEcCCcEEEEeCCCCcccc---------------------c---c------------c--eecC
Q 048012 151 IVSALAVDHSGSRVLSGSYDYTVRMYDFQGMNSRL---------------------Q---S------------F--RQLE 192 (616)
Q Consensus 151 ~V~~v~~sp~g~~lasgs~Dg~i~iwd~~~~~~~~---------------------~---~------------~--~~~~ 192 (616)
.|++|.|.++..-|+.|-..|.|.||.+....... . . | ..+.
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 58899999998999999999999999764321000 0 0 0 0011
Q ss_pred CCCCCceEEEEecCCCCeEEEEeCCCeEEEEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcC---CC----CCE
Q 048012 193 PSEGHQVRNLSWSPTSDRFLCVTGSAQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHP---KT----KET 265 (616)
Q Consensus 193 ~~~~~~v~~l~~sp~g~~l~~~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p---~~----~~~ 265 (616)
....++|++++.| +=.++++|..+|.+.|.|+.+..+..... +++..........|+++.|.- .+ .-.
T Consensus 83 ~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~----i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~ 157 (395)
T PF08596_consen 83 DAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNEN----IRESFLSKSSSSYVTSIEFSVMTLGGDGYSSIC 157 (395)
T ss_dssp ---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEE----GGG--T-SS----EEEEEEEEEE-TTSSSEEEE
T ss_pred eccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeecc----ccccccccccccCeeEEEEEEEecCCCcccceE
Confidence 1234678999997 44588889999999999999887643211 011111223455678888852 11 136
Q ss_pred EEEEeCCCCEEEEECCC-ccccceEEeeeccCCCCccEEEEE-ECCC-C-------------------CeEEEEeCCCcE
Q 048012 266 ILTSSEDGSLRIWDVNE-FKSQKQVIKPKLARPGRVAVTTCA-WDCD-G-------------------KCIAGGIGDGSI 323 (616)
Q Consensus 266 l~s~s~Dg~v~iwd~~~-~~~~~~~~~~~~~~~~~~~v~~~~-~sp~-g-------------------~~l~~g~~dg~I 323 (616)
+++|...|.+.+|.+.- ......+........+...|..+. ++.+ | .-+++.+.+..|
T Consensus 158 L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~i 237 (395)
T PF08596_consen 158 LLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDI 237 (395)
T ss_dssp EEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEE
T ss_pred EEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccce
Confidence 88899999999998751 111111111111112333444443 3221 1 124444457789
Q ss_pred EEEeCCCCCCCCCceeeecCCCCCeEEEEE-----cCCCCeEEEEecCCcEEEEeCCCCCCcceEec-CCCCCCcceeEE
Q 048012 324 QVWNLKPGWGSRPDIHVEKGHSDDITALKF-----SSDGRILLSRSFDGSLKVWDLRKMKEPLKVFE-DLPNNYAQTNVA 397 (616)
Q Consensus 324 ~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~-----spdg~~l~s~s~Dg~v~lwd~~~~~~~~~~~~-~~~~~~~v~~v~ 397 (616)
+++...+. +.........-.+..+.+ ...+..|++-..+|.|++|.+-..+.....-- .......+...+
T Consensus 238 rv~~~~~~----k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ss 313 (395)
T PF08596_consen 238 RVFKPPKS----KGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSS 313 (395)
T ss_dssp EEE-TT-------EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHHTT-E
T ss_pred EEEeCCCC----cccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCccccccccccE
Confidence 99988764 222222222122334444 23567888888999999999987554322211 111112345677
Q ss_pred ECCCCCEEEEee
Q 048012 398 FSPDEQLFLTGT 409 (616)
Q Consensus 398 fspdg~~l~~gs 409 (616)
|+++|..++..+
T Consensus 314 is~~Gdi~~~~g 325 (395)
T PF08596_consen 314 ISRNGDIFYWTG 325 (395)
T ss_dssp E-TTS-EEEE-S
T ss_pred ECCCCCEEEEeC
Confidence 788887766654
No 345
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=97.79 E-value=0.013 Score=58.80 Aligned_cols=282 Identities=13% Similarity=0.150 Sum_probs=118.6
Q ss_pred EECCCCCEEEEEE-cCCc--EEEEeCCCCccccccceecCCCCCCceEEEEecCCCCeEEEEeCCCeEEEEECCCCeeee
Q 048012 156 AVDHSGSRVLSGS-YDYT--VRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSDRFLCVTGSAQAKIYDRDGLTLGE 232 (616)
Q Consensus 156 ~~sp~g~~lasgs-~Dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~s~d~~v~vwd~~~~~~~~ 232 (616)
+|.++|+.|+-++ .||. +.+.|+.+. ...++....+.......++++.+.|+.......|+-.|+.+.+...
T Consensus 42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~-----~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~ 116 (386)
T PF14583_consen 42 CFTDDGRKLLFASDFDGNRNLYLLDLATG-----EITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERV 116 (386)
T ss_dssp -B-TTS-EEEEEE-TTSS-EEEEEETTT------EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEE
T ss_pred CcCCCCCEEEEEeccCCCcceEEEEcccC-----EEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcEEE
Confidence 5678897655544 4654 555566654 2333333333323356677888888777777788888988776432
Q ss_pred EeeCceeEeecccCCCcccceEEEEEc--CCCCCEEEEEeC----------------------CCCEEEEECCCccccce
Q 048012 233 FVKGDMYIRDLKNTKGHICGLTCGEWH--PKTKETILTSSE----------------------DGSLRIWDVNEFKSQKQ 288 (616)
Q Consensus 233 ~~~~~~~~~~~~~~~~h~~~v~~~~~~--p~~~~~l~s~s~----------------------Dg~v~iwd~~~~~~~~~ 288 (616)
... . ...-+-...|. .++ ..++-.-. .+.|..-|+.+++.. .
T Consensus 117 vy~----------~--p~~~~g~gt~v~n~d~-t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~-~ 182 (386)
T PF14583_consen 117 VYE----------V--PDDWKGYGTWVANSDC-TKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERK-V 182 (386)
T ss_dssp EEE--------------TTEEEEEEEEE-TTS-SEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EE-E
T ss_pred EEE----------C--CcccccccceeeCCCc-cEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCcee-E
Confidence 211 1 11112123332 222 22221110 233444455554322 1
Q ss_pred EEeeeccCCCCccEEEEEECCCCCeEEEEeCCC-----cEEEEeCCCCCCCCCceeeecCC--CCCeEEEEEcCCCCeEE
Q 048012 289 VIKPKLARPGRVAVTTCAWDCDGKCIAGGIGDG-----SIQVWNLKPGWGSRPDIHVEKGH--SDDITALKFSSDGRILL 361 (616)
Q Consensus 289 ~~~~~~~~~~~~~v~~~~~sp~g~~l~~g~~dg-----~I~iwd~~~~~~~~~~~~~~~~h--~~~V~~l~~spdg~~l~ 361 (616)
+.... ..+..+.|+|..-.+++=|..| .-|||-++... .....+..| ...+..=-|.+||..|.
T Consensus 183 v~~~~------~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg---~~~~~v~~~~~~e~~gHEfw~~DG~~i~ 253 (386)
T PF14583_consen 183 VFEDT------DWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDG---SNVKKVHRRMEGESVGHEFWVPDGSTIW 253 (386)
T ss_dssp EEEES------S-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS------EESS---TTEEEEEEEE-TTSS-EE
T ss_pred EEecC------ccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCC---CcceeeecCCCCcccccccccCCCCEEE
Confidence 21111 1466778888544444433322 13556554421 122222222 23355566899998776
Q ss_pred EEec-----CCcEEEEeCCCCCCcceEecCCCCCCcceeEEECCCCCEEEEeeccc-cc--------cCCCceEEEEeCC
Q 048012 362 SRSF-----DGSLKVWDLRKMKEPLKVFEDLPNNYAQTNVAFSPDEQLFLTGTSVE-RE--------STTGGLLCFYDRE 427 (616)
Q Consensus 362 s~s~-----Dg~v~lwd~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~gs~~~-~~--------~~~dg~i~iwd~~ 427 (616)
--+. +..|.-+|+.+.... .+...+ ....+--++||++++--++.. .. ...+-.|+++++.
T Consensus 254 y~~~~~~~~~~~i~~~d~~t~~~~--~~~~~p---~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~ 328 (386)
T PF14583_consen 254 YDSYTPGGQDFWIAGYDPDTGERR--RLMEMP---WCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVE 328 (386)
T ss_dssp EEEEETTT--EEEEEE-TTT--EE--EEEEE----SEEEEEE-TTSSEEEEEE-------------------EEEEEETT
T ss_pred EEeecCCCCceEEEeeCCCCCCce--EEEeCC---ceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccc
Confidence 5332 445777788765432 111111 244566688999887655321 10 0123367778887
Q ss_pred CCceEEEEecC-------CCC--CeEEEEEcCCCCcEEEEeccCCCCceEEEecc
Q 048012 428 KLELVSRVGIS-------PAC--SVVQCAWHPKLNQIFATAGDKSQGGTHILYDP 473 (616)
Q Consensus 428 ~~~~~~~~~~~-------~~~--~v~~~~~~p~~~~l~~~~~d~~~~~~~~v~~~ 473 (616)
.+......... +.. .=.-..|+|++++|+..+.- .+...||-+
T Consensus 329 ~~~~~~l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~---~G~~~vY~v 380 (386)
T PF14583_consen 329 AGRFRKLARHDTSWKVLDGDRQVTHPHPSFSPDGKWVLFRSDM---EGPPAVYLV 380 (386)
T ss_dssp TTEEEEEEE-------BTTBSSTT----EE-TTSSEEEEEE-T---TSS-EEEEE
T ss_pred cCceeeeeeccCcceeecCCCccCCCCCccCCCCCEEEEECCC---CCCccEEEE
Confidence 76543222110 000 11335677777777766653 444445443
No 346
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.78 E-value=0.016 Score=57.29 Aligned_cols=226 Identities=17% Similarity=0.213 Sum_probs=129.2
Q ss_pred EecCCCCeEEE-EeCCCeEEEEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEEEECC
Q 048012 203 SWSPTSDRFLC-VTGSAQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVN 281 (616)
Q Consensus 203 ~~sp~g~~l~~-~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~ 281 (616)
.|.++...|+. --..+.|.-|+..+.....+. +...+.++..-..+ ..|+++. .-+++++..
T Consensus 31 ~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~~~--------------~p~~~~~~~~~d~~-g~Lv~~~--~g~~~~~~~ 93 (307)
T COG3386 31 VWDPDRGALLWVDILGGRIHRLDPETGKKRVFP--------------SPGGFSSGALIDAG-GRLIACE--HGVRLLDPD 93 (307)
T ss_pred cCcCCCCEEEEEeCCCCeEEEecCCcCceEEEE--------------CCCCcccceeecCC-CeEEEEc--cccEEEecc
Confidence 45566554433 334567777776644433321 11222333333223 2455543 336777775
Q ss_pred CccccceEEeeeccCCCCccEEEEEECCCCCeEEEEeC-----------CCcEEEEeCCCCCCCCCceeeecCCCCCeEE
Q 048012 282 EFKSQKQVIKPKLARPGRVAVTTCAWDCDGKCIAGGIG-----------DGSIQVWNLKPGWGSRPDIHVEKGHSDDITA 350 (616)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~g~~-----------dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~ 350 (616)
++.....+...... ......+.+...|+|.+.++... -|.|+.+|.. + ........|-..-+.
T Consensus 94 ~~~~~t~~~~~~~~-~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~-g----~~~~l~~~~~~~~NG 167 (307)
T COG3386 94 TGGKITLLAEPEDG-LPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPD-G----GVVRLLDDDLTIPNG 167 (307)
T ss_pred CCceeEEeccccCC-CCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCC-C----CEEEeecCcEEecCc
Confidence 44332222211111 11235677888899887665444 1345555542 2 345555555556688
Q ss_pred EEEcCCCCeEEEEec-CCcEEEEeCCC-----CCCcceEecCCCCCCcceeEEECCCCCEEEEeeccccccCCC-ceEEE
Q 048012 351 LKFSSDGRILLSRSF-DGSLKVWDLRK-----MKEPLKVFEDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTG-GLLCF 423 (616)
Q Consensus 351 l~~spdg~~l~s~s~-Dg~v~lwd~~~-----~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~d-g~i~i 423 (616)
|+||||++.|+.+-. .+.|.-|++.. ........... .....-.++...+|.+.+++. .+ +.|.+
T Consensus 168 la~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~-~~G~PDG~~vDadG~lw~~a~-------~~g~~v~~ 239 (307)
T COG3386 168 LAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDE-EPGLPDGMAVDADGNLWVAAV-------WGGGRVVR 239 (307)
T ss_pred eEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccC-CCCCCCceEEeCCCCEEEecc-------cCCceEEE
Confidence 999999988877765 47788887752 11111122111 233456688888999886554 33 48999
Q ss_pred EeCCCCceEEEEecCCCCCeEEEEEc-CCCCcEEEEecc
Q 048012 424 YDREKLELVSRVGISPACSVVQCAWH-PKLNQIFATAGD 461 (616)
Q Consensus 424 wd~~~~~~~~~~~~~~~~~v~~~~~~-p~~~~l~~~~~d 461 (616)
|+.. ++++..+.++. ..+.+++|- ++.+.|++++..
T Consensus 240 ~~pd-G~l~~~i~lP~-~~~t~~~FgG~~~~~L~iTs~~ 276 (307)
T COG3386 240 FNPD-GKLLGEIKLPV-KRPTNPAFGGPDLNTLYITSAR 276 (307)
T ss_pred ECCC-CcEEEEEECCC-CCCccceEeCCCcCEEEEEecC
Confidence 9998 99999998854 556777764 567777777763
No 347
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.75 E-value=0.0097 Score=61.51 Aligned_cols=200 Identities=13% Similarity=0.113 Sum_probs=133.5
Q ss_pred eEEEEEcCCCCCEEEEEeCCCCEEEEECCCccccceEEeeeccCCCCccEEEEEECCCCCeEEEEeC---CCcEEEEeCC
Q 048012 253 LTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWDCDGKCIAGGIG---DGSIQVWNLK 329 (616)
Q Consensus 253 v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~g~~---dg~I~iwd~~ 329 (616)
-..++.++.+...+++...+..|.+.|.............. ....++++++++.+.++.. +++|.+.|..
T Consensus 76 p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~-------~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~ 148 (381)
T COG3391 76 PAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL-------GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAA 148 (381)
T ss_pred ccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeecc-------CCceEEECCCCCEEEEEecccCCceEEEEeCC
Confidence 35667788787677887778999999976654444333221 4567899999988877766 6888888887
Q ss_pred CCCCCCCceeeecCCCCCeEEEEEcCCCCeEEEEe-cCCcEEEEeCCCCCCcceEe--cCCCCCCcceeEEECCCCCEEE
Q 048012 330 PGWGSRPDIHVEKGHSDDITALKFSSDGRILLSRS-FDGSLKVWDLRKMKEPLKVF--EDLPNNYAQTNVAFSPDEQLFL 406 (616)
Q Consensus 330 ~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s-~Dg~v~lwd~~~~~~~~~~~--~~~~~~~~v~~v~fspdg~~l~ 406 (616)
++ ........-..+ ..++++|+|+.++... .+++|.+.|...... .+-. ...........+.++|+|.++.
T Consensus 149 t~----~~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v-~~~~~~~~~~~~~~P~~i~v~~~g~~~y 222 (381)
T COG3391 149 TN----KVTATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSV-VRGSVGSLVGVGTGPAGIAVDPDGNRVY 222 (381)
T ss_pred CC----eEEEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcce-eccccccccccCCCCceEEECCCCCEEE
Confidence 65 344433333234 8999999999666655 788999999765321 1100 0111223356799999999777
Q ss_pred EeeccccccCCCceEEEEeCCCCceEEE-EecCCCCCeEEEEEcCCCCcEEEEeccCCCCceEEEecc
Q 048012 407 TGTSVERESTTGGLLCFYDREKLELVSR-VGISPACSVVQCAWHPKLNQIFATAGDKSQGGTHILYDP 473 (616)
Q Consensus 407 ~gs~~~~~~~~dg~i~iwd~~~~~~~~~-~~~~~~~~v~~~~~~p~~~~l~~~~~d~~~~~~~~v~~~ 473 (616)
+... ...++.+...|..++..... +..... ....+..+|++..+++.... .+.+.+-+-
T Consensus 223 V~~~----~~~~~~v~~id~~~~~v~~~~~~~~~~-~~~~v~~~p~g~~~yv~~~~---~~~V~vid~ 282 (381)
T COG3391 223 VAND----GSGSNNVLKIDTATGNVTATDLPVGSG-APRGVAVDPAGKAAYVANSQ---GGTVSVIDG 282 (381)
T ss_pred EEec----cCCCceEEEEeCCCceEEEeccccccC-CCCceeECCCCCEEEEEecC---CCeEEEEeC
Confidence 7652 00236899999999887776 333333 56778999999999888652 344444443
No 348
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=97.73 E-value=0.038 Score=55.45 Aligned_cols=229 Identities=14% Similarity=0.165 Sum_probs=109.1
Q ss_pred EEecCCCCeEEEEeC---CCeEEEEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEEE
Q 048012 202 LSWSPTSDRFLCVTG---SAQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIW 278 (616)
Q Consensus 202 l~~sp~g~~l~~~s~---d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iw 278 (616)
-+|..+|++|+.++. ...+.+.|+.++++.++..+. + .......+++++. .++-......|+-.
T Consensus 41 ~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~----------g--~~~~g~~~s~~~~-~~~Yv~~~~~l~~v 107 (386)
T PF14583_consen 41 NCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGP----------G--DNTFGGFLSPDDR-ALYYVKNGRSLRRV 107 (386)
T ss_dssp --B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-------------B-TTT-EE-TTSS-EEEEEETTTEEEEE
T ss_pred CCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCC----------C--CCccceEEecCCC-eEEEEECCCeEEEE
Confidence 467889988887765 467888899988876653321 1 1122355667764 55444455688888
Q ss_pred ECCCccccceEEeeeccCCCCccEEEEEE--CCCCCeEEEEeC----------------------CCcEEEEeCCCCCCC
Q 048012 279 DVNEFKSQKQVIKPKLARPGRVAVTTCAW--DCDGKCIAGGIG----------------------DGSIQVWNLKPGWGS 334 (616)
Q Consensus 279 d~~~~~~~~~~~~~~~~~~~~~~v~~~~~--sp~g~~l~~g~~----------------------dg~I~iwd~~~~~~~ 334 (616)
|+.+.+....+..+.. .+-...| +.++..++..-. ...|...|+.++
T Consensus 108 dL~T~e~~~vy~~p~~------~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG--- 178 (386)
T PF14583_consen 108 DLDTLEERVVYEVPDD------WKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTG--- 178 (386)
T ss_dssp ETTT--EEEEEE--TT------EEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT----
T ss_pred ECCcCcEEEEEECCcc------cccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCC---
Confidence 9988654322222211 2222334 445555443211 123555566665
Q ss_pred CCceeeecCCCCCeEEEEEcCCCC-eEEEEec---CC-cEEEEeCCCCCCcceEecCCCCCCcceeEEECCCCCEEEEee
Q 048012 335 RPDIHVEKGHSDDITALKFSSDGR-ILLSRSF---DG-SLKVWDLRKMKEPLKVFEDLPNNYAQTNVAFSPDEQLFLTGT 409 (616)
Q Consensus 335 ~~~~~~~~~h~~~V~~l~~spdg~-~l~s~s~---Dg-~v~lwd~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~gs 409 (616)
....+..-...+..+.|+|... +|+-|-. +. .-|||-++..+...+.+..+.....+..=-|.|||..|..-+
T Consensus 179 --~~~~v~~~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~ 256 (386)
T PF14583_consen 179 --ERKVVFEDTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDS 256 (386)
T ss_dssp ---EEEEEEESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEE
T ss_pred --ceeEEEecCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEe
Confidence 2233333445688899999554 4444432 22 247787765444444444444444566668999999887754
Q ss_pred ccccccCCCceEEEEeCCCCceEEEEecCCCCCeEEEEEcCCCCcEEEEec
Q 048012 410 SVERESTTGGLLCFYDREKLELVSRVGISPACSVVQCAWHPKLNQIFATAG 460 (616)
Q Consensus 410 ~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~ 460 (616)
... ...+..|.-+|+.+++.......+ ...-+.-++++. |++|-+
T Consensus 257 ~~~--~~~~~~i~~~d~~t~~~~~~~~~p---~~~H~~ss~Dg~-L~vGDG 301 (386)
T PF14583_consen 257 YTP--GGQDFWIAGYDPDTGERRRLMEMP---WCSHFMSSPDGK-LFVGDG 301 (386)
T ss_dssp EET--TT--EEEEEE-TTT--EEEEEEE----SEEEEEE-TTSS-EEEEEE
T ss_pred ecC--CCCceEEEeeCCCCCCceEEEeCC---ceeeeEEcCCCC-EEEecC
Confidence 221 124567888999998765444332 234455566654 555543
No 349
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.69 E-value=0.048 Score=57.31 Aligned_cols=241 Identities=11% Similarity=0.097 Sum_probs=128.0
Q ss_pred eEEEEecCCCCeEEEEe-CC----CeEEEEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCC-
Q 048012 199 VRNLSWSPTSDRFLCVT-GS----AQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSED- 272 (616)
Q Consensus 199 v~~l~~sp~g~~l~~~s-~d----~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~D- 272 (616)
+..+.+||+|++|+.+- .. ..++|+|+.+++...-. +. ......+.|.+++..++.+...+
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~-----------i~--~~~~~~~~W~~d~~~~~y~~~~~~ 192 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDG-----------IE--NPKFSSVSWSDDGKGFFYTRFDED 192 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEE-----------EE--EEESEEEEECTTSSEEEEEECSTT
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCc-----------cc--ccccceEEEeCCCCEEEEEEeCcc
Confidence 44788999999988653 22 46999999887642210 00 11123489999876555555333
Q ss_pred ---------CCEEEEECCCccccceEEeeeccCCCCccEEEEEECCCCCeEEEEeCC----CcEEEEeCCCCCCCCCcee
Q 048012 273 ---------GSLRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWDCDGKCIAGGIGD----GSIQVWNLKPGWGSRPDIH 339 (616)
Q Consensus 273 ---------g~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~g~~d----g~I~iwd~~~~~~~~~~~~ 339 (616)
..|++|.+.+......++.... ........+..++++++|+..... ..|++.++..+........
T Consensus 193 ~~~~~~~~~~~v~~~~~gt~~~~d~lvfe~~--~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~ 270 (414)
T PF02897_consen 193 QRTSDSGYPRQVYRHKLGTPQSEDELVFEEP--DEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPK 270 (414)
T ss_dssp TSS-CCGCCEEEEEEETTS-GGG-EEEEC-T--TCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEE
T ss_pred cccccCCCCcEEEEEECCCChHhCeeEEeec--CCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcE
Confidence 2378888876554423332221 112126778899999998765433 3478888875310112233
Q ss_pred eecCCCCCe-EEEEEcCCCCeEEEEe---cCCcEEEEeCCCCCC--cceEecCCCCCCcceeEEECCCCCEEEEeecccc
Q 048012 340 VEKGHSDDI-TALKFSSDGRILLSRS---FDGSLKVWDLRKMKE--PLKVFEDLPNNYAQTNVAFSPDEQLFLTGTSVER 413 (616)
Q Consensus 340 ~~~~h~~~V-~~l~~spdg~~l~s~s---~Dg~v~lwd~~~~~~--~~~~~~~~~~~~~v~~v~fspdg~~l~~gs~~~~ 413 (616)
.+..+...+ ..+... .+.+++... ..+.|.-.++..... ....+........+..+. ..+.+|+.....
T Consensus 271 ~l~~~~~~~~~~v~~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~--~~~~~Lvl~~~~-- 345 (414)
T PF02897_consen 271 LLSPREDGVEYYVDHH-GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVS--LFKDYLVLSYRE-- 345 (414)
T ss_dssp EEEESSSS-EEEEEEE-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEE--EETTEEEEEEEE--
T ss_pred EEeCCCCceEEEEEcc-CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEE--EECCEEEEEEEE--
Confidence 333333333 344443 444444332 235677777776542 111332222222243343 445556555421
Q ss_pred ccCCCceEEEEeCCCCceEEEEecCCCCCeEEEEEcCCCCcEEEEecc
Q 048012 414 ESTTGGLLCFYDREKLELVSRVGISPACSVVQCAWHPKLNQIFATAGD 461 (616)
Q Consensus 414 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d 461 (616)
.....|++|++..+.....+.....+.|..+...++.+.++...+.
T Consensus 346 --~~~~~l~v~~~~~~~~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss 391 (414)
T PF02897_consen 346 --NGSSRLRVYDLDDGKESREIPLPEAGSVSGVSGDFDSDELRFSYSS 391 (414)
T ss_dssp --TTEEEEEEEETT-TEEEEEEESSSSSEEEEEES-TT-SEEEEEEEE
T ss_pred --CCccEEEEEECCCCcEEeeecCCcceEEeccCCCCCCCEEEEEEeC
Confidence 1234789999985666666666666667777777777776666553
No 350
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=97.69 E-value=0.021 Score=58.55 Aligned_cols=249 Identities=16% Similarity=0.172 Sum_probs=122.0
Q ss_pred cccEEEEEECCCCCEEEEEEcCCcEEEEeCCCCccccccceecCCC------------C-CCceEEEEecCCCCeEEEEe
Q 048012 149 TKIVSALAVDHSGSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPS------------E-GHQVRNLSWSPTSDRFLCVT 215 (616)
Q Consensus 149 ~~~V~~v~~sp~g~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~------------~-~~~v~~l~~sp~g~~l~~~s 215 (616)
...+....|+|+|+.||-.. ++.|.+++..+.......... ... + -..-..+.|||++++|+...
T Consensus 42 ~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg-~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~ 119 (353)
T PF00930_consen 42 PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQLTTDG-EPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLR 119 (353)
T ss_dssp ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEESES---TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEE
T ss_pred ccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEecccc-ceeEEcCccceeccccccccccceEECCCCCEEEEEE
Confidence 56788889999999998875 678999987654211111000 000 0 11235688999999998876
Q ss_pred CC-CeEEEEEC---CCC-----eeeeEe---eCc------eeEeecccC-----------CCcccceEEEEEcCCCCCE-
Q 048012 216 GS-AQAKIYDR---DGL-----TLGEFV---KGD------MYIRDLKNT-----------KGHICGLTCGEWHPKTKET- 265 (616)
Q Consensus 216 ~d-~~v~vwd~---~~~-----~~~~~~---~~~------~~~~~~~~~-----------~~h~~~v~~~~~~p~~~~~- 265 (616)
.| ..|+.+.+ ... .+..+. .|+ ..+.++... ..-..-+..+.|.+++..+
T Consensus 120 ~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~ 199 (353)
T PF00930_consen 120 FDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLW 199 (353)
T ss_dssp EE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEE
T ss_pred ECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEE
Confidence 54 33333332 111 111110 011 111111111 1223347788999887522
Q ss_pred EEEEeCCC---CEEEEECCCccccceEEeeeccCCCCccEEEEEEC-CCCC-eEEEEeCCCcEEEE--eCCCCCCCCCce
Q 048012 266 ILTSSEDG---SLRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWD-CDGK-CIAGGIGDGSIQVW--NLKPGWGSRPDI 338 (616)
Q Consensus 266 l~s~s~Dg---~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s-p~g~-~l~~g~~dg~I~iw--d~~~~~~~~~~~ 338 (616)
+.....+. .+.+.|..++.+..........-- .......|. +++. +|.....+|.-+|| +...+ ..
T Consensus 200 ~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv--~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~-----~~ 272 (353)
T PF00930_consen 200 VQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWV--DVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGG-----KP 272 (353)
T ss_dssp EEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSS--SSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSS-----EE
T ss_pred EEEcccCCCEEEEEEEECCCCceeEEEEecCCcce--eeecccccccCCCCEEEEEEEcCCCcEEEEEccccc-----ce
Confidence 23333333 356677766443322221111100 011233443 5444 55566677865555 54443 34
Q ss_pred eeecCCCCCeEE-EEEcCCCCeEE-EEecC--CcEEEEeCCCC-CCcceEecCCCCCCcc-eeEEECCCCCEEEEee
Q 048012 339 HVEKGHSDDITA-LKFSSDGRILL-SRSFD--GSLKVWDLRKM-KEPLKVFEDLPNNYAQ-TNVAFSPDEQLFLTGT 409 (616)
Q Consensus 339 ~~~~~h~~~V~~-l~~spdg~~l~-s~s~D--g~v~lwd~~~~-~~~~~~~~~~~~~~~v-~~v~fspdg~~l~~gs 409 (616)
..+....-.|.. +.|+++++.|+ ++..+ ..-.||-+.-. ...++.+... ... ..+.|||++++++...
T Consensus 273 ~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~---~~~~~~~~~Spdg~y~v~~~ 346 (353)
T PF00930_consen 273 RQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCE---DGDHYSASFSPDGKYYVDTY 346 (353)
T ss_dssp EESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEESSTT---SSTTEEEEE-TTSSEEEEEE
T ss_pred eccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccCC---CCCceEEEECCCCCEEEEEE
Confidence 455555556744 77788777655 44432 23444444322 2333444322 223 4899999999988765
No 351
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.69 E-value=0.00057 Score=75.07 Aligned_cols=202 Identities=13% Similarity=0.142 Sum_probs=115.2
Q ss_pred EEEEECCCCCEEEEEEcCCcEEEEeCCCC----------ccccccc--eecCCCCCCceEEEEecCCCCeEEEEeCCC--
Q 048012 153 SALAVDHSGSRVLSGSYDYTVRMYDFQGM----------NSRLQSF--RQLEPSEGHQVRNLSWSPTSDRFLCVTGSA-- 218 (616)
Q Consensus 153 ~~v~~sp~g~~lasgs~Dg~i~iwd~~~~----------~~~~~~~--~~~~~~~~~~v~~l~~sp~g~~l~~~s~d~-- 218 (616)
+.++.++.-.+++.++..+.+.|+-.... +..+... ..+......+|..+...+|+...++....+
T Consensus 45 n~la~sn~ysl~Fa~~nsk~L~vfgtknlLi~~it~D~~n~~Vd~~~~~t~~v~k~~pi~~~v~~~D~t~s~v~~tsng~ 124 (1405)
T KOG3630|consen 45 NNLAISNSYSLFFAASNSKSLAVFGTKNLLIDHITSDSTNSLVDADENLTFKVEKEIPIVIFVCFHDATDSVVVSTSNGE 124 (1405)
T ss_pred hhhhcccccceEEEecCCcceeeeccccceeecccccccccccccccccceeeeccccceEEEeccCCceEEEEEecCCc
Confidence 34556666556666666665655543211 0000000 111112233466667777777666554444
Q ss_pred eEEEEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEEEECCCccccceEEeeeccCCC
Q 048012 219 QAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPG 298 (616)
Q Consensus 219 ~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~ 298 (616)
.|..||+...+...... ...+..-+..........++.|+|.-....+.+..|+.|++.-+......... ..-
T Consensus 125 ~v~~fD~~~fs~s~~~~-~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~~~~v~s------~p~ 197 (1405)
T KOG3630|consen 125 AVYSFDLEEFSESRYET-TVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQLAQNVTS------FPV 197 (1405)
T ss_pred eEEEEehHhhhhhhhhh-ccccccccchhccccccccccccCCccchhhhhccccchhhhhhhhhhhhhcc------cCc
Confidence 78888887554322111 11111112223334456789999977667888899999999877643222211 011
Q ss_pred CccEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCCCCCceeeecC-CCCCeEEEEEcCCCCeEEEE
Q 048012 299 RVAVTTCAWDCDGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKG-HSDDITALKFSSDGRILLSR 363 (616)
Q Consensus 299 ~~~v~~~~~sp~g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~-h~~~V~~l~~spdg~~l~s~ 363 (616)
...++|++|+|.|+.+++|-..|++.-|...-. ....+..... ....|.+|+|-....+|++-
T Consensus 198 t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~le--ik~~ip~Pp~~e~yrvl~v~Wl~t~eflvvy 261 (1405)
T KOG3630|consen 198 TNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLE--IKSEIPEPPVEENYRVLSVTWLSTQEFLVVY 261 (1405)
T ss_pred ccceeeEEeccccceeeEecCCCeEEEeecccc--eeecccCCCcCCCcceeEEEEecceeEEEEe
Confidence 226899999999999999999999998875432 1111111111 13679999998766666553
No 352
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.68 E-value=0.078 Score=55.29 Aligned_cols=204 Identities=15% Similarity=0.190 Sum_probs=101.9
Q ss_pred cEEEEeCCCCccccccceecCCCCCCceEEEEecCCCCeEEEEeCCCeEEEEECCCCeeeeEeeCceeEeecccCCCccc
Q 048012 172 TVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSDRFLCVTGSAQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHIC 251 (616)
Q Consensus 172 ~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~ 251 (616)
.|+||+..+.. +.. ..+ ..+.|.++.|+.+ ..|++...+|.+++||+.+.. .+..+.. +....-..+
T Consensus 62 ~I~iys~sG~l--l~~-i~w---~~~~iv~~~wt~~-e~LvvV~~dG~v~vy~~~G~~--~fsl~~~----i~~~~v~e~ 128 (410)
T PF04841_consen 62 SIQIYSSSGKL--LSS-IPW---DSGRIVGMGWTDD-EELVVVQSDGTVRVYDLFGEF--QFSLGEE----IEEEKVLEC 128 (410)
T ss_pred EEEEECCCCCE--eEE-EEE---CCCCEEEEEECCC-CeEEEEEcCCEEEEEeCCCce--eechhhh----ccccCcccc
Confidence 48899877631 111 111 2267999999885 667788999999999998665 3322111 111111222
Q ss_pred ceEEEEEcCCCCCEEEEEeCCCCEEEEECCCcc-ccceEEe-eeccC-CC-CccEEE-EEECCCCCeEEEEeCCCcEEEE
Q 048012 252 GLTCGEWHPKTKETILTSSEDGSLRIWDVNEFK-SQKQVIK-PKLAR-PG-RVAVTT-CAWDCDGKCIAGGIGDGSIQVW 326 (616)
Q Consensus 252 ~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~-~~~~~~~-~~~~~-~~-~~~v~~-~~~sp~g~~l~~g~~dg~I~iw 326 (616)
.+....+...| -.+++ .++.+.+..-.... ....+.. +.... .+ ...+.. ..++.+....+....++.|.+.
T Consensus 129 ~i~~~~~~~~G-ivvLt--~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i 205 (410)
T PF04841_consen 129 RIFAIWFYKNG-IVVLT--GNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYII 205 (410)
T ss_pred cccccccCCCC-EEEEC--CCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEE
Confidence 22222333223 22332 33433333211111 1111100 00000 00 000111 2344455555555556666655
Q ss_pred eCCCCCCCCCceeeecCCCCCeEEEEEcCCCCeEEEEecCCcEEEEeCCCCCCcceEecCCCCCCcceeEEECCC
Q 048012 327 NLKPGWGSRPDIHVEKGHSDDITALKFSSDGRILLSRSFDGSLKVWDLRKMKEPLKVFEDLPNNYAQTNVAFSPD 401 (616)
Q Consensus 327 d~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~v~~v~fspd 401 (616)
+-... ..+. ..+++..|++||+|++||.-..+|.+.+.... ....+..+.. ........+.|.-+
T Consensus 206 ~~~~~-------~~i~-~~~~i~~iavSpng~~iAl~t~~g~l~v~ssD-f~~~~~e~~~-~~~~~p~~~~WCG~ 270 (410)
T PF04841_consen 206 DENSF-------KQID-SDGPIIKIAVSPNGKFIALFTDSGNLWVVSSD-FSEKLCEFDT-DSKSPPKQMAWCGN 270 (410)
T ss_pred Ecccc-------cccc-CCCCeEEEEECCCCCEEEEEECCCCEEEEECc-ccceeEEeec-CcCCCCcEEEEECC
Confidence 43321 0111 23579999999999999999999999998754 3333333322 12234556666544
No 353
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.65 E-value=0.01 Score=60.00 Aligned_cols=146 Identities=16% Similarity=0.157 Sum_probs=87.3
Q ss_pred CCEEEEEeC----------CCCEEEEECCCc----cccceEEeeeccCCCCccEEEEEECCCCCeEEEEeCCCcEEEEeC
Q 048012 263 KETILTSSE----------DGSLRIWDVNEF----KSQKQVIKPKLARPGRVAVTTCAWDCDGKCIAGGIGDGSIQVWNL 328 (616)
Q Consensus 263 ~~~l~s~s~----------Dg~v~iwd~~~~----~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~g~~dg~I~iwd~ 328 (616)
..+|+.|.. .|.|.++++... .....+... ...++|++++-- +++ |+++. .+.|++|++
T Consensus 42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~----~~~g~V~ai~~~-~~~-lv~~~-g~~l~v~~l 114 (321)
T PF03178_consen 42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHST----EVKGPVTAICSF-NGR-LVVAV-GNKLYVYDL 114 (321)
T ss_dssp SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEE----EESS-EEEEEEE-TTE-EEEEE-TTEEEEEEE
T ss_pred cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEE----eecCcceEhhhh-CCE-EEEee-cCEEEEEEc
Confidence 356666643 288999999874 122222111 123378888755 444 55444 589999999
Q ss_pred CCCCCCCCceee-ecCCCCCeEEEEEcCCCCeEEEEecCCcEEEEeCCCCCCcceEecCCCCCCcceeEEECCCCCEEEE
Q 048012 329 KPGWGSRPDIHV-EKGHSDDITALKFSSDGRILLSRSFDGSLKVWDLRKMKEPLKVFEDLPNNYAQTNVAFSPDEQLFLT 407 (616)
Q Consensus 329 ~~~~~~~~~~~~-~~~h~~~V~~l~~spdg~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~ 407 (616)
.... ..... .......|.++... +++|+.|..-..|.++..+.....+..+........++++.|-+++..+++
T Consensus 115 ~~~~---~l~~~~~~~~~~~i~sl~~~--~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~ 189 (321)
T PF03178_consen 115 DNSK---TLLKKAFYDSPFYITSLSVF--KNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIV 189 (321)
T ss_dssp ETTS---SEEEEEEE-BSSSEEEEEEE--TTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEE
T ss_pred cCcc---cchhhheecceEEEEEEecc--ccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEE
Confidence 8751 12211 11122356666665 669999998888888866543332333333333456889999877678888
Q ss_pred eeccccccCCCceEEEEeCC
Q 048012 408 GTSVERESTTGGLLCFYDRE 427 (616)
Q Consensus 408 gs~~~~~~~~dg~i~iwd~~ 427 (616)
+. .+|.|.++...
T Consensus 190 ~D-------~~gnl~~l~~~ 202 (321)
T PF03178_consen 190 GD-------KDGNLFVLRYN 202 (321)
T ss_dssp EE-------TTSEEEEEEE-
T ss_pred Ec-------CCCeEEEEEEC
Confidence 88 89999999865
No 354
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=97.64 E-value=0.058 Score=59.27 Aligned_cols=285 Identities=11% Similarity=0.097 Sum_probs=145.2
Q ss_pred cccEEEEEECCCC------CEEEEEEcCCcEEEEeCCCCccccccceecCCCCCCceEEEEecCCCCeEEEEeCCCeEEE
Q 048012 149 TKIVSALAVDHSG------SRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSDRFLCVTGSAQAKI 222 (616)
Q Consensus 149 ~~~V~~v~~sp~g------~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~s~d~~v~v 222 (616)
...|.|+.++|-| ++++.|..+..+.+--+................-...|.-..|--+..+|+++.+||.+.-
T Consensus 530 e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~~~iPRSIl~~~~e~d~~yLlvalgdG~l~~ 609 (1096)
T KOG1897|consen 530 EYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITHEQLSGEIIPRSILLTTFEGDIHYLLVALGDGALLY 609 (1096)
T ss_pred cceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceeeeeccCCCccchheeeEEeeccceEEEEEcCCceEEE
Confidence 5679999999753 3788888877665554332111111110111111223666677777889999999999887
Q ss_pred EECC--CCeeeeEee---Cc--eeEeecccCCCcccceEE--------------EE--------------EcCC-CCCEE
Q 048012 223 YDRD--GLTLGEFVK---GD--MYIRDLKNTKGHICGLTC--------------GE--------------WHPK-TKETI 266 (616)
Q Consensus 223 wd~~--~~~~~~~~~---~~--~~~~~~~~~~~h~~~v~~--------------~~--------------~~p~-~~~~l 266 (616)
|.++ ++.+....+ |. ..++.+... ....|.| +. |+.+ .+.-+
T Consensus 610 fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk--~~t~vfa~sdrP~viY~~n~kLv~spls~kev~~~c~f~s~a~~d~l 687 (1096)
T KOG1897|consen 610 FVLDINTGQLSDRKKVTLGTQPISLRTFSSK--SRTAVFALSDRPTVIYSSNGKLVYSPLSLKEVNHMCPFNSDAYPDSL 687 (1096)
T ss_pred EEEEcccceEccccccccCCCCcEEEEEeeC--CceEEEEeCCCCEEEEecCCcEEEeccchHHhhhhcccccccCCceE
Confidence 7655 333222111 00 000100000 0000100 01 1111 11123
Q ss_pred EEEeCCCCEEEEECCCccccceEEeeeccCCCCccEEEEEECCCCCeEEEEeCC--------------CcEEEEeCCCCC
Q 048012 267 LTSSEDGSLRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWDCDGKCIAGGIGD--------------GSIQVWNLKPGW 332 (616)
Q Consensus 267 ~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~g~~d--------------g~I~iwd~~~~~ 332 (616)
+++. .+.+++.-+..-+....-..+. ......+++.+...++++.+.. ..++++|-++
T Consensus 688 ~~~~-~~~l~i~tid~iqkl~irtvpl-----~~~prrI~~q~~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nT-- 759 (1096)
T KOG1897|consen 688 ASAN-GGALTIGTIDEIQKLHIRTVPL-----GESPRRICYQESSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNT-- 759 (1096)
T ss_pred EEec-CCceEEEEecchhhcceeeecC-----CCChhheEecccceEEEEEecccccchhhcCCcceEEEEEEecCCc--
Confidence 3332 3456666555433222111111 1145667777655555444321 1366666554
Q ss_pred CCCCceeeecCCC-------CCeEEEEEcCC-CCeEEEEec----------CCcEEEEeCCCCCCcceEecCCCCCCcce
Q 048012 333 GSRPDIHVEKGHS-------DDITALKFSSD-GRILLSRSF----------DGSLKVWDLRKMKEPLKVFEDLPNNYAQT 394 (616)
Q Consensus 333 ~~~~~~~~~~~h~-------~~V~~l~~spd-g~~l~s~s~----------Dg~v~lwd~~~~~~~~~~~~~~~~~~~v~ 394 (616)
...+..|. -.|.++.|..| +.++++|.. .|.|.+|.+.. ...++....+.-.+.+.
T Consensus 760 -----f~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e-~~~L~~v~e~~v~Gav~ 833 (1096)
T KOG1897|consen 760 -----FEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEE-LNSLELVAETVVKGAVY 833 (1096)
T ss_pred -----eeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEec-CCceeeeeeeeecccee
Confidence 22333333 23556668887 667777652 46788887776 23344443333333343
Q ss_pred eEEECCCCCEEEEeeccccccCCCceEEEEeCCCCceEEEEecCCCCCeEEEEEcCCCCcEEEEec
Q 048012 395 NVAFSPDEQLFLTGTSVERESTTGGLLCFYDREKLELVSRVGISPACSVVQCAWHPKLNQIFATAG 460 (616)
Q Consensus 395 ~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~ 460 (616)
++.. -+|++||.- +..|++|+..+.+.++.- ..+...+..+...-.+..|+++..
T Consensus 834 aL~~-fngkllA~I---------n~~vrLye~t~~~eLr~e-~~~~~~~~aL~l~v~gdeI~VgDl 888 (1096)
T KOG1897|consen 834 ALVE-FNGKLLAGI---------NQSVRLYEWTTERELRIE-CNISNPIIALDLQVKGDEIAVGDL 888 (1096)
T ss_pred ehhh-hCCeEEEec---------CcEEEEEEccccceehhh-hcccCCeEEEEEEecCcEEEEeec
Confidence 3322 256666654 578999999888655433 234566777777777888887765
No 355
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.60 E-value=0.1 Score=53.94 Aligned_cols=264 Identities=17% Similarity=0.149 Sum_probs=158.8
Q ss_pred cEEEEEECCCCCEEE-EEEcCCcEEEEeCCCCccccccceecCCCCCCceEEEEecCCCCeEEEEe-CCCeEEEEECCCC
Q 048012 151 IVSALAVDHSGSRVL-SGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSDRFLCVT-GSAQAKIYDRDGL 228 (616)
Q Consensus 151 ~V~~v~~sp~g~~la-sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~s-~d~~v~vwd~~~~ 228 (616)
....+.+.+++..+. +-.....+.+-+.. .. ............-..++.++.+..+++.. .+..|.+.|....
T Consensus 32 ~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~-~n----~~~~~~~~g~~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~ 106 (381)
T COG3391 32 GPGGVAVNPDGTQVYVANSGSNDVSVIDAT-SN----TVTQSLSVGGVYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATN 106 (381)
T ss_pred CCceeEEcCccCEEEEEeecCceeeecccc-cc----eeeeeccCCCccccceeeCCCCCeEEEecCCCCeEEEEcCccc
Confidence 445567777774333 33222344444433 11 11111111113456788888888665555 4589999996655
Q ss_pred eeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEe--CCCCEEEEECCCccccceEEeeeccCCCCccEEEEE
Q 048012 229 TLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSS--EDGSLRIWDVNEFKSQKQVIKPKLARPGRVAVTTCA 306 (616)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s--~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~ 306 (616)
....+.. .+. .-..+++.++++.+.++-. .++++.+.|..+.+....... +..+ ..++
T Consensus 107 ~~~~~~~-----------vG~--~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~v------G~~P-~~~a 166 (381)
T COG3391 107 TVLGSIP-----------VGL--GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPV------GNTP-TGVA 166 (381)
T ss_pred ceeeEee-----------ecc--CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEec------CCCc-ceEE
Confidence 5433211 111 4567899998876666665 368888888877655444211 1113 7889
Q ss_pred ECCCCCeEEEEe-CCCcEEEEeCCCCCCCCCcee-e---ecCCCCCeEEEEEcCCCCeEEEEecC---CcEEEEeCCCCC
Q 048012 307 WDCDGKCIAGGI-GDGSIQVWNLKPGWGSRPDIH-V---EKGHSDDITALKFSSDGRILLSRSFD---GSLKVWDLRKMK 378 (616)
Q Consensus 307 ~sp~g~~l~~g~-~dg~I~iwd~~~~~~~~~~~~-~---~~~h~~~V~~l~~spdg~~l~s~s~D---g~v~lwd~~~~~ 378 (616)
++|+|+.+++.. .++.|.++|.... .... . ...-...-..+.++++|.++...... +.+...|..+..
T Consensus 167 ~~p~g~~vyv~~~~~~~v~vi~~~~~----~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~ 242 (381)
T COG3391 167 VDPDGNKVYVTNSDDNTVSVIDTSGN----SVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGN 242 (381)
T ss_pred ECCCCCeEEEEecCCCeEEEEeCCCc----ceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCce
Confidence 999999766655 7889999997654 1221 0 11112234678999999977665544 588888887643
Q ss_pred CcceEecCCCCCCcceeEEECCCCCEEEEeeccccccCCCceEEEEeCCCCceEEEEecCCC--CCeEEEEEcCC
Q 048012 379 EPLKVFEDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREKLELVSRVGISPA--CSVVQCAWHPK 451 (616)
Q Consensus 379 ~~~~~~~~~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~--~~v~~~~~~p~ 451 (616)
. .......... ....+.++|+|.++.+... ..+.+.+.|..+......+..... ..+..+++.+.
T Consensus 243 v-~~~~~~~~~~-~~~~v~~~p~g~~~yv~~~------~~~~V~vid~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 309 (381)
T COG3391 243 V-TATDLPVGSG-APRGVAVDPAGKAAYVANS------QGGTVSVIDGATDRVVKTGPTGNEALGEPVSIAISPL 309 (381)
T ss_pred E-EEeccccccC-CCCceeECCCCCEEEEEec------CCCeEEEEeCCCCceeeeecccccccccceeccceee
Confidence 2 1111111222 4667899999999999863 468899999998888777643211 22455555544
No 356
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.59 E-value=0.015 Score=55.45 Aligned_cols=216 Identities=13% Similarity=0.087 Sum_probs=107.1
Q ss_pred EecCCcccEEEEEECCCCC-EEEEEEcCCcEEEEeCCCCccccccceecCCCCCCceEEEEecCCCCeEEEEeCCCeEEE
Q 048012 144 VLKGHTKIVSALAVDHSGS-RVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSDRFLCVTGSAQAKI 222 (616)
Q Consensus 144 ~l~~H~~~V~~v~~sp~g~-~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~s~d~~v~v 222 (616)
.+.+-.+.|..|+|+|+.. ++++....+.|..++.++. . ++.+.....+-.-.|++..++.++++--.++.+.+
T Consensus 16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~G~--v---lr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~ 90 (248)
T PF06977_consen 16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLDGK--V---LRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYI 90 (248)
T ss_dssp E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT----E---EEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEE
T ss_pred ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCCCC--E---EEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEE
Confidence 4556667799999999755 6666666788877776532 2 22222222345788899877776665556889999
Q ss_pred EECCCCe--eeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEEEECCC--ccccceEEee-e-c-c
Q 048012 223 YDRDGLT--LGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNE--FKSQKQVIKP-K-L-A 295 (616)
Q Consensus 223 wd~~~~~--~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~--~~~~~~~~~~-~-~-~ 295 (616)
+++.... +... ......+.....+...+-.++|.+.+. .|+.+-...-.+||.+.. .......... . . .
T Consensus 91 ~~~~~~~~~~~~~---~~~~~~l~~~~~~N~G~EGla~D~~~~-~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~ 166 (248)
T PF06977_consen 91 FTIDDDTTSLDRA---DVQKISLGFPNKGNKGFEGLAYDPKTN-RLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDD 166 (248)
T ss_dssp EEE----TT--EE---EEEEEE---S---SS--EEEEEETTTT-EEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-H
T ss_pred EEEeccccccchh---hceEEecccccCCCcceEEEEEcCCCC-EEEEEeCCCChhhEEEccccCccceeeccccccccc
Confidence 9884321 1100 000011222345667899999999875 455555666677776653 1111111110 0 0 1
Q ss_pred CCCCccEEEEEECCC-CCeEEEEeCCCcEEEEeCCCCCCCCCceeeecC--C-----CCCeEEEEEcCCCCeEEEEecCC
Q 048012 296 RPGRVAVTTCAWDCD-GKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKG--H-----SDDITALKFSSDGRILLSRSFDG 367 (616)
Q Consensus 296 ~~~~~~v~~~~~sp~-g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~--h-----~~~V~~l~~spdg~~l~s~s~Dg 367 (616)
...-..+.+++++|. +++++....+..|.++|.... ......+.. | -..--.|+|.++|++.++ +.-+
T Consensus 167 ~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d~~G~---~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIv-sEpN 242 (248)
T PF06977_consen 167 KLFVRDLSGLSYDPRTGHLLILSDESRLLLELDRQGR---VVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIV-SEPN 242 (248)
T ss_dssp T--SS---EEEEETTTTEEEEEETTTTEEEEE-TT-----EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEE-ETTT
T ss_pred cceeccccceEEcCCCCeEEEEECCCCeEEEECCCCC---EEEEEEeCCcccCcccccCCccEEEECCCCCEEEE-cCCc
Confidence 112225788999985 556777777888999995432 111122222 1 124678999999966555 4455
Q ss_pred cEEEE
Q 048012 368 SLKVW 372 (616)
Q Consensus 368 ~v~lw 372 (616)
.+++|
T Consensus 243 lfy~f 247 (248)
T PF06977_consen 243 LFYRF 247 (248)
T ss_dssp EEEEE
T ss_pred eEEEe
Confidence 44443
No 357
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=97.57 E-value=0.034 Score=57.07 Aligned_cols=86 Identities=9% Similarity=0.179 Sum_probs=57.1
Q ss_pred CCCCeEEEEEcCCCCeEEEEecCCcEEEEeCCCCCCcceEecCCCCCCcceeEEEC----CC----------------CC
Q 048012 344 HSDDITALKFSSDGRILLSRSFDGSLKVWDLRKMKEPLKVFEDLPNNYAQTNVAFS----PD----------------EQ 403 (616)
Q Consensus 344 h~~~V~~l~~spdg~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~v~~v~fs----pd----------------g~ 403 (616)
....+.+|+.+|++++.|+...=|.|.|+|+.++ ..++++++... -.+.|- .. ..
T Consensus 306 ~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~-~vvrmWKGYRd----Aqc~wi~~~~~~~~~~~~~~~~~~~~~~~l 380 (415)
T PF14655_consen 306 SKREGESICLSPSGRLAAVTDSLGRVLLIDVARG-IVVRMWKGYRD----AQCGWIEVPEEGDRDRSNSNSPKSSSRFAL 380 (415)
T ss_pred CCceEEEEEECCCCCEEEEEcCCCcEEEEECCCC-hhhhhhccCcc----ceEEEEEeecccccccccccccCCCCcceE
Confidence 3355889999999999888877799999999864 44555554321 112211 11 12
Q ss_pred EEEEeeccccccCCCceEEEEeCCCCceEEEEecCCC
Q 048012 404 LFLTGTSVERESTTGGLLCFYDREKLELVSRVGISPA 440 (616)
Q Consensus 404 ~l~~gs~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 440 (616)
+|+.=.- .-|.|.||.+++|..+..+.+..+
T Consensus 381 ~LvIyap------rRg~lEvW~~~~g~Rv~a~~v~k~ 411 (415)
T PF14655_consen 381 FLVIYAP------RRGILEVWSMRQGPRVAAFNVGKG 411 (415)
T ss_pred EEEEEec------cCCeEEEEecCCCCEEEEEEeCCC
Confidence 2322221 578999999999999988876544
No 358
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.53 E-value=0.0095 Score=62.17 Aligned_cols=184 Identities=19% Similarity=0.164 Sum_probs=91.5
Q ss_pred ecCCcccEEEEEECCCCCEEEEEEcCCcEEEEeCCCCccccccceecCCCCCCceEEEEecCCCCeEEEEeCCCeEEEEE
Q 048012 145 LKGHTKIVSALAVDHSGSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSDRFLCVTGSAQAKIYD 224 (616)
Q Consensus 145 l~~H~~~V~~v~~sp~g~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~s~d~~v~vwd 224 (616)
+....-....+.++|+|++++. +.||...||...... .. ..+....+.|... ..+++...+..|.|+.
T Consensus 28 lg~~~~~p~~ls~npngr~v~V-~g~geY~iyt~~~~r-------~k---~~G~g~~~vw~~~-n~yAv~~~~~~I~I~k 95 (443)
T PF04053_consen 28 LGSCEIYPQSLSHNPNGRFVLV-CGDGEYEIYTALAWR-------NK---AFGSGLSFVWSSR-NRYAVLESSSTIKIYK 95 (443)
T ss_dssp EEE-SS--SEEEE-TTSSEEEE-EETTEEEEEETTTTE-------EE---EEEE-SEEEE-TS-SEEEEE-TTS-EEEEE
T ss_pred CCCCCcCCeeEEECCCCCEEEE-EcCCEEEEEEccCCc-------cc---ccCceeEEEEecC-ccEEEEECCCeEEEEE
Confidence 3344555789999999999988 457788888733221 11 1122556889884 4567677788899963
Q ss_pred -CCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEEEECCCccccceEEeeeccCCCCccEE
Q 048012 225 -RDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPGRVAVT 303 (616)
Q Consensus 225 -~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~ 303 (616)
++.... +.+.- ...+..+-. | .+|+..+.+ .|.+||+.+++.+..+... .|.
T Consensus 96 n~~~~~~-------------k~i~~-~~~~~~If~---G-~LL~~~~~~-~i~~yDw~~~~~i~~i~v~--------~vk 148 (443)
T PF04053_consen 96 NFKNEVV-------------KSIKL-PFSVEKIFG---G-NLLGVKSSD-FICFYDWETGKLIRRIDVS--------AVK 148 (443)
T ss_dssp TTEE-TT-------------------SS-EEEEE----S-SSEEEEETT-EEEEE-TTT--EEEEESS---------E-E
T ss_pred cCccccc-------------eEEcC-CcccceEEc---C-cEEEEECCC-CEEEEEhhHcceeeEEecC--------CCc
Confidence 322110 00111 112222222 4 456665544 7999999987655544211 478
Q ss_pred EEEECCCCCeEEEEeCCCcEEEEeCCCC-------CCCCCceeeecCCCCCeEEEEEcCCCCeEEEEecCCcEEE
Q 048012 304 TCAWDCDGKCIAGGIGDGSIQVWNLKPG-------WGSRPDIHVEKGHSDDITALKFSSDGRILLSRSFDGSLKV 371 (616)
Q Consensus 304 ~~~~sp~g~~l~~g~~dg~I~iwd~~~~-------~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~v~l 371 (616)
.+.|+++|.+++..+.+ ++.|++.... ......+.....-...|.+.+|..+ .++-.... .|+.
T Consensus 149 ~V~Ws~~g~~val~t~~-~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d--~fiYtT~~-~lkY 219 (443)
T PF04053_consen 149 YVIWSDDGELVALVTKD-SIYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED--CFIYTTSN-HLKY 219 (443)
T ss_dssp EEEE-TTSSEEEEE-S--SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT--EEEEE-TT-EEEE
T ss_pred EEEEECCCCEEEEEeCC-eEEEEEecchhcccccccCchhceEEEEEecceeEEEEEEcC--EEEEEcCC-eEEE
Confidence 99999999999998854 6778765421 0000023333332456888888754 44433333 4544
No 359
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=97.52 E-value=0.064 Score=57.56 Aligned_cols=203 Identities=15% Similarity=0.088 Sum_probs=99.8
Q ss_pred CCEEEEEEcCCcEEEEeCCCCccccccceecC-CCCCCceE--EEEecCCCCeEEEEeCCCeEEEEECCCCe-eeeEeeC
Q 048012 161 GSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLE-PSEGHQVR--NLSWSPTSDRFLCVTGSAQAKIYDRDGLT-LGEFVKG 236 (616)
Q Consensus 161 g~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~-~~~~~~v~--~l~~sp~g~~l~~~s~d~~v~vwd~~~~~-~~~~~~~ 236 (616)
+.+++.++.++.|.-.|..++....+.-.... ......+. .+... ++..+++++.++.|.-+|..+++ ++.+...
T Consensus 61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~~ 139 (488)
T cd00216 61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAETGKQVWKFGNN 139 (488)
T ss_pred CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cCCeEEEecCCCeEEEEECCCCCEeeeecCC
Confidence 44666677788888888876543322111100 00000010 01111 22678888899999999987554 4433211
Q ss_pred ceeEeecccCCCcccceE-EEEEcCCCCCEEEEEe---------CCCCEEEEECCCccccceEEeeeccC----------
Q 048012 237 DMYIRDLKNTKGHICGLT-CGEWHPKTKETILTSS---------EDGSLRIWDVNEFKSQKQVIKPKLAR---------- 296 (616)
Q Consensus 237 ~~~~~~~~~~~~h~~~v~-~~~~~p~~~~~l~s~s---------~Dg~v~iwd~~~~~~~~~~~~~~~~~---------- 296 (616)
... .....+. ...+. + .+++.++ .++.|..+|..+++............
T Consensus 140 ~~~--------~~~~~i~ssP~v~--~-~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~ 208 (488)
T cd00216 140 DQV--------PPGYTMTGAPTIV--K-KLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDR 208 (488)
T ss_pred CCc--------CcceEecCCCEEE--C-CEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCc
Confidence 100 0000010 11111 1 2444443 36788999998887666543321100
Q ss_pred -----CCCccEEEEEECCCCCeEEEEeCCC------------------cEEEEeCCCCCCCCCceeee--cCCCCC----
Q 048012 297 -----PGRVAVTTCAWDCDGKCIAGGIGDG------------------SIQVWNLKPGWGSRPDIHVE--KGHSDD---- 347 (616)
Q Consensus 297 -----~~~~~v~~~~~sp~g~~l~~g~~dg------------------~I~iwd~~~~~~~~~~~~~~--~~h~~~---- 347 (616)
.....-.+.++.+.+.++++++.++ .|.-+|+.++. ..-.. ..|...
T Consensus 209 ~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~----~~W~~~~~~~~~~~~~~ 284 (488)
T cd00216 209 QMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGK----VKWFYQTTPHDLWDYDG 284 (488)
T ss_pred ceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCC----EEEEeeCCCCCCccccc
Confidence 0000011345555677788887665 68888988872 22221 112110
Q ss_pred eEEEEEc----CCCC---eEEEEecCCcEEEEeCCCCCC
Q 048012 348 ITALKFS----SDGR---ILLSRSFDGSLKVWDLRKMKE 379 (616)
Q Consensus 348 V~~l~~s----pdg~---~l~s~s~Dg~v~lwd~~~~~~ 379 (616)
.....+. -+|. +++.++.+|.+...|.+++..
T Consensus 285 ~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~ 323 (488)
T cd00216 285 PNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKL 323 (488)
T ss_pred CCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcE
Confidence 0000111 1233 566777788888888876553
No 360
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=97.45 E-value=0.021 Score=57.78 Aligned_cols=237 Identities=14% Similarity=0.087 Sum_probs=104.9
Q ss_pred CCCEEEEEE-cCCcEEEEeCCCCccccccceecCCC--C----CCceEEEEecCCCCeEEEEeCC------CeEEEEECC
Q 048012 160 SGSRVLSGS-YDYTVRMYDFQGMNSRLQSFRQLEPS--E----GHQVRNLSWSPTSDRFLCVTGS------AQAKIYDRD 226 (616)
Q Consensus 160 ~g~~lasgs-~Dg~i~iwd~~~~~~~~~~~~~~~~~--~----~~~v~~l~~sp~g~~l~~~s~d------~~v~vwd~~ 226 (616)
..++|+..+ ..+.|+|.|+.+.....+..+.+.+. . -.....+.--|+|+.++++-++ |.+.++|-+
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~ 165 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGE 165 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TT
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCc
Confidence 346777776 67889999998543333333333320 0 0123334445788888876433 567788877
Q ss_pred CCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeC--------------------CCCEEEEECCCcccc
Q 048012 227 GLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSE--------------------DGSLRIWDVNEFKSQ 286 (616)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~--------------------Dg~v~iwd~~~~~~~ 286 (616)
+.++...... -.+....-..+-|.|.. ++++|... ..+|.+||+.+.+..
T Consensus 166 tf~v~g~We~---------~~~~~~~gYDfw~qpr~-nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~ 235 (461)
T PF05694_consen 166 TFEVKGRWEK---------DRGPQPFGYDFWYQPRH-NVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLL 235 (461)
T ss_dssp T--EEEE--S---------B-TT------EEEETTT-TEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEE
T ss_pred cccccceecc---------CCCCCCCCCCeEEcCCC-CEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEe
Confidence 6654332111 11223344567777754 67777653 467999999886655
Q ss_pred ceEEeeeccCCCCccEEEEEEC--CCCCeEEEE-eCCCcEEEEeC-CCCCCCCCceeeec-----------------CCC
Q 048012 287 KQVIKPKLARPGRVAVTTCAWD--CDGKCIAGG-IGDGSIQVWNL-KPGWGSRPDIHVEK-----------------GHS 345 (616)
Q Consensus 287 ~~~~~~~~~~~~~~~v~~~~~s--p~g~~l~~g-~~dg~I~iwd~-~~~~~~~~~~~~~~-----------------~h~ 345 (616)
+.+-... ....+..+.|. |+..+-++| ...++|.+|-- ..+......+..+. +-.
T Consensus 236 Q~idLg~----~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P 311 (461)
T PF05694_consen 236 QTIDLGE----EGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVP 311 (461)
T ss_dssp EEEES-T----TEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE-
T ss_pred eEEecCC----CCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCC
Confidence 5543321 11134555554 444443333 34556665543 22210111111111 112
Q ss_pred CCeEEEEEcCCCCeEEEEe-cCCcEEEEeCCCCCCcceEecCC----------------CCCCcceeEEECCCCCEEEEe
Q 048012 346 DDITALKFSSDGRILLSRS-FDGSLKVWDLRKMKEPLKVFEDL----------------PNNYAQTNVAFSPDEQLFLTG 408 (616)
Q Consensus 346 ~~V~~l~~spdg~~l~s~s-~Dg~v~lwd~~~~~~~~~~~~~~----------------~~~~~v~~v~fspdg~~l~~g 408 (616)
.-|+.|..|.|.++|.... .+|.|+.||+.....+..+-+.. .-.+...-|..|.||+.|...
T Consensus 312 ~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvT 391 (461)
T PF05694_consen 312 PLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVT 391 (461)
T ss_dssp -----EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE
T ss_pred CceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEE
Confidence 4479999999999988777 68999999998866655443210 011223568899999999987
Q ss_pred ec
Q 048012 409 TS 410 (616)
Q Consensus 409 s~ 410 (616)
++
T Consensus 392 nS 393 (461)
T PF05694_consen 392 NS 393 (461)
T ss_dssp --
T ss_pred ee
Confidence 74
No 361
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.44 E-value=0.014 Score=54.98 Aligned_cols=104 Identities=18% Similarity=0.312 Sum_probs=75.4
Q ss_pred EEEEEcCCCCCEEEEEeCCCC-EEEEECCCccccceEEeeeccCCCCccEEEEEECCCCCeEEEEeCC-----CcEEEEe
Q 048012 254 TCGEWHPKTKETILTSSEDGS-LRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWDCDGKCIAGGIGD-----GSIQVWN 327 (616)
Q Consensus 254 ~~~~~~p~~~~~l~s~s~Dg~-v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~g~~d-----g~I~iwd 327 (616)
..+.|+|..+.-++.+-.-|+ ..++|.+..+....+.... .+...-.-+||++|.+|++.-.| |.|-|||
T Consensus 71 Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~----~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd 146 (366)
T COG3490 71 HGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQE----GRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYD 146 (366)
T ss_pred CCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEeccc----CceeecccccCCCCcEEEeecCCCCCCCceEEEEe
Confidence 467888887777888877776 5688988765544443222 11123334699999999886543 7899999
Q ss_pred CCCCCCCCCceeeecCCCCCeEEEEEcCCCCeEEEEe
Q 048012 328 LKPGWGSRPDIHVEKGHSDDITALKFSSDGRILLSRS 364 (616)
Q Consensus 328 ~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s 364 (616)
.+.++ ..+-.+..|.-.-..+.|.+||++|+.+.
T Consensus 147 ~r~~f---qrvgE~~t~GiGpHev~lm~DGrtlvvan 180 (366)
T COG3490 147 AREGF---QRVGEFSTHGIGPHEVTLMADGRTLVVAN 180 (366)
T ss_pred ccccc---ceecccccCCcCcceeEEecCCcEEEEeC
Confidence 98653 56667788887888999999999998764
No 362
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.40 E-value=0.01 Score=60.42 Aligned_cols=205 Identities=15% Similarity=0.220 Sum_probs=117.3
Q ss_pred ceEEEEecCCCCeEEEEeCCCeEEEEECCCCeeeeEe--eCceeE---eecccCCCcccceEEEEEcCCCCC-EEEEEeC
Q 048012 198 QVRNLSWSPTSDRFLCVTGSAQAKIYDRDGLTLGEFV--KGDMYI---RDLKNTKGHICGLTCGEWHPKTKE-TILTSSE 271 (616)
Q Consensus 198 ~v~~l~~sp~g~~l~~~s~d~~v~vwd~~~~~~~~~~--~~~~~~---~~~~~~~~h~~~v~~~~~~p~~~~-~l~s~s~ 271 (616)
.|.++++...++.+++++... +.|+.-. .+..+. ++-... ..+....++...-..+..+....+ +|.++..
T Consensus 278 ~i~sl~~~a~~NS~Lvv~~~n-s~V~Rn~--~iGVfk~ekgl~f~~~i~n~s~~~g~S~~P~K~mL~~~dsnlil~~~~~ 354 (644)
T KOG2395|consen 278 GIGSLDEGALDNSFLVVGYGN-SYVTRNN--RIGVFKNEKGLEFKAAIKNVSDGDGKSIDPHKAMLHRADSNLILMDGGE 354 (644)
T ss_pred ccchhhhcccCCceEEecccc-eEEEecc--eeeeeccCCceEEEeccCcccCCCccccCcchhhhhccccceEeeCCCC
Confidence 367777776656555554432 4444322 111111 111111 122233444322222223322333 4455556
Q ss_pred CCCEEEEECCCccccceEEeeeccCCCCccEEEEEECCCCC-------eEEEEeCCCcEEEEeCCCCCCCCCceeeecCC
Q 048012 272 DGSLRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWDCDGK-------CIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGH 344 (616)
Q Consensus 272 Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~-------~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~h 344 (616)
-..|+-.|+..++.+....... .|+-+.+.|+.+ .-+.|-.|..|.-||.|-. ....+.....|
T Consensus 355 ~~~l~klDIE~GKIVeEWk~~~-------di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~--~~~kl~~~q~k 425 (644)
T KOG2395|consen 355 QDKLYKLDIERGKIVEEWKFED-------DINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQ--GKNKLAVVQSK 425 (644)
T ss_pred cCcceeeecccceeeeEeeccC-------CcceeeccCCcchhcccccccEEeecCCceEEeccccc--Ccceeeeeecc
Confidence 6678888888877655443221 256666777644 2345777899999999853 11233333444
Q ss_pred C----CCeEEEEEcCCCCeEEEEecCCcEEEEeCCCCCCcceEecCCCCCCcceeEEECCCCCEEEEeeccccccCCCce
Q 048012 345 S----DDITALKFSSDGRILLSRSFDGSLKVWDLRKMKEPLKVFEDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGL 420 (616)
Q Consensus 345 ~----~~V~~l~~spdg~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~ 420 (616)
. ....|++-..+| +|++||.+|.|+|||- .+......+.++ +.+|..|..+.+|++|++.+ +..
T Consensus 426 qy~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdr-i~~~AKTAlPgL--G~~I~hVdvtadGKwil~Tc--------~ty 493 (644)
T KOG2395|consen 426 QYSTKNNFSCFATTESG-YIVVGSLKGDIRLYDR-IGRRAKTALPGL--GDAIKHVDVTADGKWILATC--------KTY 493 (644)
T ss_pred ccccccccceeeecCCc-eEEEeecCCcEEeehh-hhhhhhhccccc--CCceeeEEeeccCcEEEEec--------ccE
Confidence 3 335666666566 8999999999999996 444444444443 34599999999999998876 566
Q ss_pred EEEEeC
Q 048012 421 LCFYDR 426 (616)
Q Consensus 421 i~iwd~ 426 (616)
|.+.++
T Consensus 494 LlLi~t 499 (644)
T KOG2395|consen 494 LLLIDT 499 (644)
T ss_pred EEEEEE
Confidence 766664
No 363
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.36 E-value=0.011 Score=60.33 Aligned_cols=150 Identities=19% Similarity=0.137 Sum_probs=89.2
Q ss_pred CCCeEEE-EeCCCeEEEEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCC------CEEEEEeCCCCEEEEE
Q 048012 207 TSDRFLC-VTGSAQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTK------ETILTSSEDGSLRIWD 279 (616)
Q Consensus 207 ~g~~l~~-~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~------~~l~s~s~Dg~v~iwd 279 (616)
+.++|+. +.....++-.|++.+++.+..+ -|.. |+-+.+.|+.+ ..-+.|-.|..|.-||
T Consensus 344 dsnlil~~~~~~~~l~klDIE~GKIVeEWk------------~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriD 410 (644)
T KOG2395|consen 344 DSNLILMDGGEQDKLYKLDIERGKIVEEWK------------FEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRID 410 (644)
T ss_pred ccceEeeCCCCcCcceeeecccceeeeEee------------ccCC-cceeeccCCcchhcccccccEEeecCCceEEec
Confidence 3444433 3333566667777666543322 1111 44455555432 1234466688899999
Q ss_pred CCCccccceEEeeeccCCCCccEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCCCCCceeeecCCCCCeEEEEEcCCCCe
Q 048012 280 VNEFKSQKQVIKPKLARPGRVAVTTCAWDCDGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHSDDITALKFSSDGRI 359 (616)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~ 359 (616)
.+-.....................|++-.-+| +||+|+.+|.|||||- .+ +.....+.+...+|..|..+.+|++
T Consensus 411 pRv~~~~kl~~~q~kqy~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdr-i~---~~AKTAlPgLG~~I~hVdvtadGKw 485 (644)
T KOG2395|consen 411 PRVQGKNKLAVVQSKQYSTKNNFSCFATTESG-YIVVGSLKGDIRLYDR-IG---RRAKTALPGLGDAIKHVDVTADGKW 485 (644)
T ss_pred ccccCcceeeeeeccccccccccceeeecCCc-eEEEeecCCcEEeehh-hh---hhhhhcccccCCceeeEEeeccCcE
Confidence 87432211111111111222245566555444 7899999999999997 32 2444567788899999999999999
Q ss_pred EEEEecCCcEEEEeCC
Q 048012 360 LLSRSFDGSLKVWDLR 375 (616)
Q Consensus 360 l~s~s~Dg~v~lwd~~ 375 (616)
|+..+ +..+.|.++.
T Consensus 486 il~Tc-~tyLlLi~t~ 500 (644)
T KOG2395|consen 486 ILATC-KTYLLLIDTL 500 (644)
T ss_pred EEEec-ccEEEEEEEe
Confidence 88665 6778787764
No 364
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.33 E-value=0.048 Score=50.77 Aligned_cols=136 Identities=16% Similarity=0.113 Sum_probs=85.5
Q ss_pred EcCCCCCEEEEEeCCCCEEEEECCCccccceEEeeeccCCCCccEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCCCCCc
Q 048012 258 WHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWDCDGKCIAGGIGDGSIQVWNLKPGWGSRPD 337 (616)
Q Consensus 258 ~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~g~~dg~I~iwd~~~~~~~~~~ 337 (616)
..++.+.+++.|+..+.+.--|..+++.....+. +.+.....+. -|++++.|+..|.+++.+.+++. .
T Consensus 18 V~~dskT~v~igSHs~~~~avd~~sG~~~We~il-----g~RiE~sa~v---vgdfVV~GCy~g~lYfl~~~tGs----~ 85 (354)
T KOG4649|consen 18 VCNDSKTLVVIGSHSGIVIAVDPQSGNLIWEAIL-----GVRIECSAIV---VGDFVVLGCYSGGLYFLCVKTGS----Q 85 (354)
T ss_pred EecCCceEEEEecCCceEEEecCCCCcEEeehhh-----CceeeeeeEE---ECCEEEEEEccCcEEEEEecchh----h
Confidence 3445567888999999999999888765544322 2222223333 47889999999999999999882 3
Q ss_pred eeeecCCCCCeEEEEEcCCCCeEEEEecCCcEEEEeCCCCCCcceEecCCCCCCcceeEEECC-CCCEEEEe
Q 048012 338 IHVEKGHSDDITALKFSSDGRILLSRSFDGSLKVWDLRKMKEPLKVFEDLPNNYAQTNVAFSP-DEQLFLTG 408 (616)
Q Consensus 338 ~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~v~~v~fsp-dg~~l~~g 408 (616)
...+.....-=......+++.++..++.|++++..|.++.....+ ..-......+-++.| ++.+.++.
T Consensus 86 ~w~f~~~~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVyk---skcgG~~f~sP~i~~g~~sly~a~ 154 (354)
T KOG4649|consen 86 IWNFVILETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYK---SKCGGGTFVSPVIAPGDGSLYAAI 154 (354)
T ss_pred eeeeeehhhhccceEEcCCCceEEEecCCCcEEEecccccceEEe---cccCCceeccceecCCCceEEEEe
Confidence 333332222112344567899999999999999999987543222 211222233445666 44444443
No 365
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=97.30 E-value=0.071 Score=53.92 Aligned_cols=253 Identities=15% Similarity=0.191 Sum_probs=116.8
Q ss_pred cEEEEEECCCCCEEEEEEcCCcEEEEeCCCCc-cccccceecCCCCCCceEEEEecCC----CCeEEEEeCC--------
Q 048012 151 IVSALAVDHSGSRVLSGSYDYTVRMYDFQGMN-SRLQSFRQLEPSEGHQVRNLSWSPT----SDRFLCVTGS-------- 217 (616)
Q Consensus 151 ~V~~v~~sp~g~~lasgs~Dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~v~~l~~sp~----g~~l~~~s~d-------- 217 (616)
.-++|+|.|+|++|++ -..|.|++++..+.. ..+.....+..........++|+|+ +...++.+..
T Consensus 3 ~P~~~a~~pdG~l~v~-e~~G~i~~~~~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~~ 81 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLVA-ERSGRIWVVDKDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDND 81 (331)
T ss_dssp SEEEEEEETTSCEEEE-ETTTEEEEEETTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSEE
T ss_pred CceEEEEeCCCcEEEE-eCCceEEEEeCCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCcc
Confidence 3578999999877665 669999999933321 1111121223334456899999995 3333333321
Q ss_pred CeEEEEECCCC--eeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCC-------------EEEEECCC
Q 048012 218 AQAKIYDRDGL--TLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGS-------------LRIWDVNE 282 (616)
Q Consensus 218 ~~v~vwd~~~~--~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~-------------v~iwd~~~ 282 (616)
..|.-|..... .+... ...+..+............|.|.|++ .++++.+..+. |.-.+...
T Consensus 82 ~~v~r~~~~~~~~~~~~~---~~l~~~~p~~~~~~H~g~~l~fgpDG-~LYvs~G~~~~~~~~~~~~~~~G~ilri~~dG 157 (331)
T PF07995_consen 82 NRVVRFTLSDGDGDLSSE---EVLVTGLPDTSSGNHNGGGLAFGPDG-KLYVSVGDGGNDDNAQDPNSLRGKILRIDPDG 157 (331)
T ss_dssp EEEEEEEEETTSCEEEEE---EEEEEEEES-CSSSS-EEEEEE-TTS-EEEEEEB-TTTGGGGCSTTSSTTEEEEEETTS
T ss_pred eeeEEEeccCCccccccc---eEEEEEeCCCCCCCCCCccccCCCCC-cEEEEeCCCCCcccccccccccceEEEecccC
Confidence 13333433332 11111 11111111111223344569999988 46665554332 21122111
Q ss_pred ccc------------cceEEeeeccCCCCccEEEEEECCC-CCeEEEE-eCCCcEEEEeCCCC----CC-----------
Q 048012 283 FKS------------QKQVIKPKLARPGRVAVTTCAWDCD-GKCIAGG-IGDGSIQVWNLKPG----WG----------- 333 (616)
Q Consensus 283 ~~~------------~~~~~~~~~~~~~~~~v~~~~~sp~-g~~l~~g-~~dg~I~iwd~~~~----~~----------- 333 (616)
.. ...+. ..+.+ ....++|+|. |+++++= +.++.=.|.-+..+ |.
T Consensus 158 -~~p~dnP~~~~~~~~~~i~----A~GlR-N~~~~~~d~~tg~l~~~d~G~~~~dein~i~~G~nYGWP~~~~~~~~~~~ 231 (331)
T PF07995_consen 158 -SIPADNPFVGDDGADSEIY----AYGLR-NPFGLAFDPNTGRLWAADNGPDGWDEINRIEPGGNYGWPYCEGGPKYSGP 231 (331)
T ss_dssp -SB-TTSTTTTSTTSTTTEE----EE--S-EEEEEEEETTTTEEEEEEE-SSSSEEEEEE-TT-B--TTTBSSSCSTTSS
T ss_pred -cCCCCCccccCCCceEEEE----EeCCC-ccccEEEECCCCcEEEEccCCCCCcEEEEeccCCcCCCCCCcCCCCCCCC
Confidence 00 00000 01222 3567899998 6655432 22222222222222 00
Q ss_pred ----------CCCceeeecCCCCCeEEEEEcC-------CCCeEEEEecCCcEEEEeCCCCCCcceEecCC-CCCCccee
Q 048012 334 ----------SRPDIHVEKGHSDDITALKFSS-------DGRILLSRSFDGSLKVWDLRKMKEPLKVFEDL-PNNYAQTN 395 (616)
Q Consensus 334 ----------~~~~~~~~~~h~~~V~~l~~sp-------dg~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~-~~~~~v~~ 395 (616)
....+..+..| ..+..+.|.. .|.+|++.-..+.|....+............. .....+..
T Consensus 232 ~~~~~~~~~~~~~P~~~~~~~-~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~ 310 (331)
T PF07995_consen 232 PIGDAPSCPGFVPPVFAYPPH-SAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRD 310 (331)
T ss_dssp -ECTGSS-TTS---SEEETTT---EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEE
T ss_pred ccccccCCCCcCccceeecCc-cccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceE
Confidence 00122233444 4577777764 45566666666677777776443322221111 12235889
Q ss_pred EEECCCCCEEEEeeccccccCCCceEE
Q 048012 396 VAFSPDEQLFLTGTSVERESTTGGLLC 422 (616)
Q Consensus 396 v~fspdg~~l~~gs~~~~~~~~dg~i~ 422 (616)
|++.|||.++++.. .+|.|+
T Consensus 311 v~~~pDG~Lyv~~d-------~~G~iy 330 (331)
T PF07995_consen 311 VAQGPDGALYVSDD-------SDGKIY 330 (331)
T ss_dssp EEEETTSEEEEEE--------TTTTEE
T ss_pred EEEcCCCeEEEEEC-------CCCeEe
Confidence 99999998888776 566653
No 366
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.27 E-value=0.0007 Score=43.05 Aligned_cols=36 Identities=36% Similarity=0.483 Sum_probs=32.6
Q ss_pred eEEecCCcccEEEEEECCCCCEEEEEEcCCcEEEEe
Q 048012 142 EIVLKGHTKIVSALAVDHSGSRVLSGSYDYTVRMYD 177 (616)
Q Consensus 142 ~~~l~~H~~~V~~v~~sp~g~~lasgs~Dg~i~iwd 177 (616)
...+..|...|+++.|++.+.++++++.|+.|++|+
T Consensus 5 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 5 LKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 346678999999999999999999999999999996
No 367
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.18 E-value=0.17 Score=53.23 Aligned_cols=196 Identities=18% Similarity=0.139 Sum_probs=102.5
Q ss_pred ccceEEEEEcCCCCCEEEEEeCCCC----EEEEECCCccccceEEeeeccCCCCccEEEEEECCCCCeEEEEeCCC----
Q 048012 250 ICGLTCGEWHPKTKETILTSSEDGS----LRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWDCDGKCIAGGIGDG---- 321 (616)
Q Consensus 250 ~~~v~~~~~~p~~~~~l~s~s~Dg~----v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~g~~dg---- 321 (616)
...+....++|++..++++.+..|. |+++|+.+++.....+... ....++|.++++.|+....+.
T Consensus 123 ~~~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~-------~~~~~~W~~d~~~~~y~~~~~~~~~ 195 (414)
T PF02897_consen 123 YVSLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENP-------KFSSVSWSDDGKGFFYTRFDEDQRT 195 (414)
T ss_dssp -EEEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEE-------ESEEEEECTTSSEEEEEECSTTTSS
T ss_pred eEEeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccccc-------ccceEEEeCCCCEEEEEEeCccccc
Confidence 3445577899998756666566555 9999999875544332221 123499999988877665433
Q ss_pred -------cEEEEeCCCCCCCCCceeeecCCCC--CeEEEEEcCCCCeEEEEecC----CcEEEEeCCCC---CCcceEec
Q 048012 322 -------SIQVWNLKPGWGSRPDIHVEKGHSD--DITALKFSSDGRILLSRSFD----GSLKVWDLRKM---KEPLKVFE 385 (616)
Q Consensus 322 -------~I~iwd~~~~~~~~~~~~~~~~h~~--~V~~l~~spdg~~l~s~s~D----g~v~lwd~~~~---~~~~~~~~ 385 (616)
.|++|.+.+. .......+..... ....+..++|+++|+..+.. ..+.+.|+... ......+.
T Consensus 196 ~~~~~~~~v~~~~~gt~--~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~ 273 (414)
T PF02897_consen 196 SDSGYPRQVYRHKLGTP--QSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLS 273 (414)
T ss_dssp -CCGCCEEEEEEETTS---GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEE
T ss_pred ccCCCCcEEEEEECCCC--hHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEe
Confidence 3788888765 2222233433332 26788999999998765433 34777888763 22233332
Q ss_pred CCCCCCcceeEEECCCCCEEEEeeccccccCCCceEEEEeCCCCce--EEEEecCCCCCeEEEEEcCCCCcEEEEec
Q 048012 386 DLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREKLEL--VSRVGISPACSVVQCAWHPKLNQIFATAG 460 (616)
Q Consensus 386 ~~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~~~~--~~~~~~~~~~~v~~~~~~p~~~~l~~~~~ 460 (616)
.... .....+... .+.+++... .....+.|.-.++.+... -..+-+.+...+.-..+...+++|+....
T Consensus 274 ~~~~-~~~~~v~~~-~~~~yi~Tn----~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~ 344 (414)
T PF02897_consen 274 PRED-GVEYYVDHH-GDRLYILTN----DDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYR 344 (414)
T ss_dssp ESSS-S-EEEEEEE-TTEEEEEE-----TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEE
T ss_pred CCCC-ceEEEEEcc-CCEEEEeeC----CCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEEEE
Confidence 2111 112223222 343443332 122567788888877653 22222333332333333334455555554
No 368
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.18 E-value=0.002 Score=66.86 Aligned_cols=94 Identities=18% Similarity=0.270 Sum_probs=76.0
Q ss_pred CCeEEEEEcCCCCeEEEEecCCcEEEEeCCCCCCcceEecCCCCCCcce-eEEECCCCCEEEEeeccccccCCCceEEEE
Q 048012 346 DDITALKFSSDGRILLSRSFDGSLKVWDLRKMKEPLKVFEDLPNNYAQT-NVAFSPDEQLFLTGTSVERESTTGGLLCFY 424 (616)
Q Consensus 346 ~~V~~l~~spdg~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~v~-~v~fspdg~~l~~gs~~~~~~~~dg~i~iw 424 (616)
..|.-+.|+|.-.+||.+..+|.|.+..+. ..+ +-.+.. ++-.++ +++|.|||++|++|- .||+|++.
T Consensus 21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qR-lwtip~--p~~~v~~sL~W~~DGkllaVg~-------kdG~I~L~ 89 (665)
T KOG4640|consen 21 INIKRIEWNPKMDLIATRTEKGELLIHRLN-WQR-LWTIPI--PGENVTASLCWRPDGKLLAVGF-------KDGTIRLH 89 (665)
T ss_pred cceEEEEEcCccchhheeccCCcEEEEEec-cce-eEeccC--CCCccceeeeecCCCCEEEEEe-------cCCeEEEE
Confidence 457889999999999999999999888876 222 333322 233355 999999999999999 89999999
Q ss_pred eCCCCceEEEEecCCCCCeEEEEEcC
Q 048012 425 DREKLELVSRVGISPACSVVQCAWHP 450 (616)
Q Consensus 425 d~~~~~~~~~~~~~~~~~v~~~~~~p 450 (616)
|+.++..+..........|.++.|.+
T Consensus 90 Dve~~~~l~~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 90 DVEKGGRLVSFLFSVETDISKGIWDR 115 (665)
T ss_pred EccCCCceeccccccccchheeeccc
Confidence 99999999886666677899999974
No 369
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.16 E-value=0.002 Score=66.76 Aligned_cols=92 Identities=15% Similarity=0.241 Sum_probs=72.8
Q ss_pred cEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCCCCCceeeecCCCCCeE-EEEEcCCCCeEEEEecCCcEEEEeCCCCCC
Q 048012 301 AVTTCAWDCDGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHSDDIT-ALKFSSDGRILLSRSFDGSLKVWDLRKMKE 379 (616)
Q Consensus 301 ~v~~~~~sp~g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~-~l~~spdg~~l~s~s~Dg~v~lwd~~~~~~ 379 (616)
.+.-+.|+|.-.+||.+..+|.|.+..+.- ..+..+.-|...++ +++|.|||++||.|-.||+|+|.|+.++..
T Consensus 22 ~i~~~ewnP~~dLiA~~t~~gelli~R~n~-----qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~ 96 (665)
T KOG4640|consen 22 NIKRIEWNPKMDLIATRTEKGELLIHRLNW-----QRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGR 96 (665)
T ss_pred ceEEEEEcCccchhheeccCCcEEEEEecc-----ceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCc
Confidence 577889999999999999999999988762 45666666777777 999999999999999999999999998654
Q ss_pred cceEecCCCCCCcceeEEEC
Q 048012 380 PLKVFEDLPNNYAQTNVAFS 399 (616)
Q Consensus 380 ~~~~~~~~~~~~~v~~v~fs 399 (616)
.... .......|+++-|+
T Consensus 97 l~~~--~~s~e~~is~~~w~ 114 (665)
T KOG4640|consen 97 LVSF--LFSVETDISKGIWD 114 (665)
T ss_pred eecc--ccccccchheeecc
Confidence 3321 12233447778886
No 370
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.14 E-value=0.15 Score=50.17 Aligned_cols=154 Identities=13% Similarity=0.196 Sum_probs=90.4
Q ss_pred CCEEEEEeCCCCEEEEECCCccccceEEeeeccCCCCccEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCCCCCce--e-
Q 048012 263 KETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWDCDGKCIAGGIGDGSIQVWNLKPGWGSRPDI--H- 339 (616)
Q Consensus 263 ~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~g~~dg~I~iwd~~~~~~~~~~~--~- 339 (616)
++.|+.|..+| |.++++........+... ..|..+...++-+.|++-+ |+.|+++++..-....... .
T Consensus 7 ~~~L~vGt~~G-l~~~~~~~~~~~~~i~~~-------~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~ 77 (275)
T PF00780_consen 7 GDRLLVGTEDG-LYVYDLSDPSKPTRILKL-------SSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAF 77 (275)
T ss_pred CCEEEEEECCC-EEEEEecCCccceeEeec-------ceEEEEEEecccCEEEEEc-CCccEEEEchhhccccccccccc
Confidence 36888898888 999998332222222211 1488888888877776665 5999999987642111000 0
Q ss_pred -------eecCCCCCeEEEE--EcCCCCeEEEEecCCcEEEEeCCCCCCcc-eEecCCCCCCcceeEEECCCCCEEEEee
Q 048012 340 -------VEKGHSDDITALK--FSSDGRILLSRSFDGSLKVWDLRKMKEPL-KVFEDLPNNYAQTNVAFSPDEQLFLTGT 409 (616)
Q Consensus 340 -------~~~~h~~~V~~l~--~spdg~~l~s~s~Dg~v~lwd~~~~~~~~-~~~~~~~~~~~v~~v~fspdg~~l~~gs 409 (616)
........+...+ -...+...+......+|.+|......... ..+....-...+..++|. +..|+.|.
T Consensus 78 ~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~--~~~i~v~~ 155 (275)
T PF00780_consen 78 PKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISLPDPPSSIAFL--GNKICVGT 155 (275)
T ss_pred cccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEcCCCcEEEEEe--CCEEEEEe
Confidence 0111223344444 12234444445556689998887532222 222233333558899998 67788876
Q ss_pred ccccccCCCceEEEEeCCCCceEEEE
Q 048012 410 SVERESTTGGLLCFYDREKLELVSRV 435 (616)
Q Consensus 410 ~~~~~~~~dg~i~iwd~~~~~~~~~~ 435 (616)
.....+.|+.++.....+
T Consensus 156 --------~~~f~~idl~~~~~~~l~ 173 (275)
T PF00780_consen 156 --------SKGFYLIDLNTGSPSELL 173 (275)
T ss_pred --------CCceEEEecCCCCceEEe
Confidence 344778999877664443
No 371
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=97.11 E-value=0.34 Score=47.92 Aligned_cols=263 Identities=17% Similarity=0.160 Sum_probs=139.3
Q ss_pred eEEEEecCCCCeEEEEeC----------CCeEEEEECCCCeeeeEeeCceeEeec-ccCCCcccceEEEEEcCCCCCEEE
Q 048012 199 VRNLSWSPTSDRFLCVTG----------SAQAKIYDRDGLTLGEFVKGDMYIRDL-KNTKGHICGLTCGEWHPKTKETIL 267 (616)
Q Consensus 199 v~~l~~sp~g~~l~~~s~----------d~~v~vwd~~~~~~~~~~~~~~~~~~~-~~~~~h~~~v~~~~~~p~~~~~l~ 267 (616)
.-.+..+|+++.+++++. .-.|.+||..+.....-.. +-.- +.. .......+.++.+++ +++
T Consensus 38 ~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~----iP~k~R~~--~~~~~~~~~ls~dgk-~~~ 110 (342)
T PF06433_consen 38 LGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIE----IPPKPRAQ--VVPYKNMFALSADGK-FLY 110 (342)
T ss_dssp SEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEE----ETTS-B----BS--GGGEEE-TTSS-EEE
T ss_pred CCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEe----cCCcchhe--ecccccceEEccCCc-EEE
Confidence 344678999998887542 3478999998876532211 1000 000 011223346677665 444
Q ss_pred EEe--CCCCEEEEECCCccccceEEeeeccCCCCccEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCCCC-CceeeecCC
Q 048012 268 TSS--EDGSLRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWDCDGKCIAGGIGDGSIQVWNLKPGWGSR-PDIHVEKGH 344 (616)
Q Consensus 268 s~s--~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~g~~dg~I~iwd~~~~~~~~-~~~~~~~~h 344 (616)
... --.+|.|-|+...+....+..+ .+..+ |-...+-+.+-|.||++.-..+...-... .....+..-
T Consensus 111 V~N~TPa~SVtVVDl~~~kvv~ei~~P--------GC~~i-yP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~ 181 (342)
T PF06433_consen 111 VQNFTPATSVTVVDLAAKKVVGEIDTP--------GCWLI-YPSGNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPD 181 (342)
T ss_dssp EEEESSSEEEEEEETTTTEEEEEEEGT--------SEEEE-EEEETTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTT
T ss_pred EEccCCCCeEEEEECCCCceeeeecCC--------CEEEE-EecCCCceEEEecCCceEEEEECCCCCEeEeeccccCCC
Confidence 332 2345888888776554443221 11111 21122457788899999999887431111 111112222
Q ss_pred CCCe-EEEEEcCCCCeEEEEecCCcEEEEeCCCCCC-cceEecCCC--------CCCcceeEEECCCCCEEEEeecc-cc
Q 048012 345 SDDI-TALKFSSDGRILLSRSFDGSLKVWDLRKMKE-PLKVFEDLP--------NNYAQTNVAFSPDEQLFLTGTSV-ER 413 (616)
Q Consensus 345 ~~~V-~~l~~spdg~~l~s~s~Dg~v~lwd~~~~~~-~~~~~~~~~--------~~~~v~~v~fspdg~~l~~gs~~-~~ 413 (616)
..++ ..-++...+..++-.+.+|.|+--|+..... ....+.... ..+...-+++++....|++-... ..
T Consensus 182 ~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~ 261 (342)
T PF06433_consen 182 DDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGE 261 (342)
T ss_dssp TS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--T
T ss_pred CcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCC
Confidence 2222 2334455555666678899999888875431 111111110 00113447888776666654321 12
Q ss_pred ccCCC--ceEEEEeCCCCceEEEEecCCCCCeEEEEEcCCCC-cEEEEeccCCCCceEEEecccCCCCCcEEEEe
Q 048012 414 ESTTG--GLLCFYDREKLELVSRVGISPACSVVQCAWHPKLN-QIFATAGDKSQGGTHILYDPRLSERGALVCVA 485 (616)
Q Consensus 414 ~~~~d--g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~-~l~~~~~d~~~~~~~~v~~~~~s~~g~~l~s~ 485 (616)
+...+ ..|.+||+.+++.+.++... ..+.++..+.+.. .|++.... ++.+.+||.. .|+++-+.
T Consensus 262 gsHKdpgteVWv~D~~t~krv~Ri~l~--~~~~Si~Vsqd~~P~L~~~~~~---~~~l~v~D~~---tGk~~~~~ 328 (342)
T PF06433_consen 262 GSHKDPGTEVWVYDLKTHKRVARIPLE--HPIDSIAVSQDDKPLLYALSAG---DGTLDVYDAA---TGKLVRSI 328 (342)
T ss_dssp T-TTS-EEEEEEEETTTTEEEEEEEEE--EEESEEEEESSSS-EEEEEETT---TTEEEEEETT---T--EEEEE
T ss_pred CCccCCceEEEEEECCCCeEEEEEeCC--CccceEEEccCCCcEEEEEcCC---CCeEEEEeCc---CCcEEeeh
Confidence 22233 36889999999999999764 3467888888766 44444442 6789999987 36665544
No 372
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.08 E-value=0.081 Score=52.45 Aligned_cols=192 Identities=15% Similarity=0.086 Sum_probs=102.2
Q ss_pred EEEEEECCCCCEEEEEEcCCcEEEEeCCCCccccccceecC-CCCCCceEEEEecCCCCeEEEEeC---------CCeEE
Q 048012 152 VSALAVDHSGSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLE-PSEGHQVRNLSWSPTSDRFLCVTG---------SAQAK 221 (616)
Q Consensus 152 V~~v~~sp~g~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~-~~~~~~v~~l~~sp~g~~l~~~s~---------d~~v~ 221 (616)
+.++..-..+.+|+++. .-++++++...... ..+.... .......+.+...|+|.+.+.... ...-.
T Consensus 68 ~~~~~~~d~~g~Lv~~~--~g~~~~~~~~~~~~-t~~~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~ 144 (307)
T COG3386 68 FSSGALIDAGGRLIACE--HGVRLLDPDTGGKI-TLLAEPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGS 144 (307)
T ss_pred cccceeecCCCeEEEEc--cccEEEeccCCcee-EEeccccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcce
Confidence 34444333444555543 33666666433210 1111111 112234677888888876554333 01123
Q ss_pred EEECC-CCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEEEECCC--ccccceEEeeeccCCC
Q 048012 222 IYDRD-GLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNE--FKSQKQVIKPKLARPG 298 (616)
Q Consensus 222 vwd~~-~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~--~~~~~~~~~~~~~~~~ 298 (616)
||-++ .... .+....+...-+.++|+|+++.++++=+..+.|.-|++.. +.......... ....
T Consensus 145 lyr~~p~g~~------------~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~-~~~~ 211 (307)
T COG3386 145 LYRVDPDGGV------------VRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVD-FDEE 211 (307)
T ss_pred EEEEcCCCCE------------EEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEE-ccCC
Confidence 34333 2221 1123455566689999999975666656668888887752 11111110011 1112
Q ss_pred CccEEEEEECCCCCeEEEEeCCC-cEEEEeCCCCCCCCCceeeecCCCCCeEEEEEcC-CCCeEEEEe
Q 048012 299 RVAVTTCAWDCDGKCIAGGIGDG-SIQVWNLKPGWGSRPDIHVEKGHSDDITALKFSS-DGRILLSRS 364 (616)
Q Consensus 299 ~~~v~~~~~sp~g~~l~~g~~dg-~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp-dg~~l~s~s 364 (616)
.+..-.++...+|++-+++..+| .|.+|+.. + ..+....-....+++++|-- +.+.|+..+
T Consensus 212 ~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G----~l~~~i~lP~~~~t~~~FgG~~~~~L~iTs 274 (307)
T COG3386 212 PGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-G----KLLGEIKLPVKRPTNPAFGGPDLNTLYITS 274 (307)
T ss_pred CCCCCceEEeCCCCEEEecccCCceEEEECCC-C----cEEEEEECCCCCCccceEeCCCcCEEEEEe
Confidence 23455667778888876655555 89999987 4 45555555557788888853 445555444
No 373
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.06 E-value=0.0013 Score=41.77 Aligned_cols=37 Identities=43% Similarity=0.774 Sum_probs=32.7
Q ss_pred ceeeecCCCCCeEEEEEcCCCCeEEEEecCCcEEEEe
Q 048012 337 DIHVEKGHSDDITALKFSSDGRILLSRSFDGSLKVWD 373 (616)
Q Consensus 337 ~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~v~lwd 373 (616)
....+..|...|.++.|++++.++++++.|+.+++|+
T Consensus 4 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 4 LLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 4455667888999999999999999999999999996
No 374
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.02 E-value=0.12 Score=52.10 Aligned_cols=145 Identities=14% Similarity=0.090 Sum_probs=86.5
Q ss_pred CCeEEEEeC---------C-CeEEEEECCCC-----eeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCC
Q 048012 208 SDRFLCVTG---------S-AQAKIYDRDGL-----TLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSED 272 (616)
Q Consensus 208 g~~l~~~s~---------d-~~v~vwd~~~~-----~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~D 272 (616)
..+|++|+. . |.|.++++... ++.. + ......+.|++++-.. + .|+.+. .
T Consensus 42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~----------i-~~~~~~g~V~ai~~~~-~--~lv~~~-g 106 (321)
T PF03178_consen 42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL----------I-HSTEVKGPVTAICSFN-G--RLVVAV-G 106 (321)
T ss_dssp SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE----------E-EEEEESS-EEEEEEET-T--EEEEEE-T
T ss_pred cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE----------E-EEEeecCcceEhhhhC-C--EEEEee-c
Confidence 356666653 2 88999998874 2211 1 1123356688877662 2 444444 4
Q ss_pred CCEEEEECCCccccceEEeeeccCCCCccEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCCCCCce-eeecCCCCCeEEE
Q 048012 273 GSLRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWDCDGKCIAGGIGDGSIQVWNLKPGWGSRPDI-HVEKGHSDDITAL 351 (616)
Q Consensus 273 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~g~~dg~I~iwd~~~~~~~~~~~-~~~~~h~~~V~~l 351 (616)
+.|.+|++...+........ .....++++... +++|++|.....|.++..+.. ..... .........++++
T Consensus 107 ~~l~v~~l~~~~~l~~~~~~----~~~~~i~sl~~~--~~~I~vgD~~~sv~~~~~~~~--~~~l~~va~d~~~~~v~~~ 178 (321)
T PF03178_consen 107 NKLYVYDLDNSKTLLKKAFY----DSPFYITSLSVF--KNYILVGDAMKSVSLLRYDEE--NNKLILVARDYQPRWVTAA 178 (321)
T ss_dssp TEEEEEEEETTSSEEEEEEE-----BSSSEEEEEEE--TTEEEEEESSSSEEEEEEETT--TE-EEEEEEESS-BEEEEE
T ss_pred CEEEEEEccCcccchhhhee----cceEEEEEEecc--ccEEEEEEcccCEEEEEEEcc--CCEEEEEEecCCCccEEEE
Confidence 78999999876511111111 111256666554 669999999888888855432 11122 1223345568999
Q ss_pred EEcCCCCeEEEEecCCcEEEEeCC
Q 048012 352 KFSSDGRILLSRSFDGSLKVWDLR 375 (616)
Q Consensus 352 ~~spdg~~l~s~s~Dg~v~lwd~~ 375 (616)
.|-.+++.++.+..+|.|.++...
T Consensus 179 ~~l~d~~~~i~~D~~gnl~~l~~~ 202 (321)
T PF03178_consen 179 EFLVDEDTIIVGDKDGNLFVLRYN 202 (321)
T ss_dssp EEE-SSSEEEEEETTSEEEEEEE-
T ss_pred EEecCCcEEEEEcCCCeEEEEEEC
Confidence 998777899999999999999875
No 375
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=96.96 E-value=0.03 Score=45.43 Aligned_cols=101 Identities=21% Similarity=0.305 Sum_probs=64.8
Q ss_pred EEEEEECC---CC-CEEEEEEcCCcEEEEeCCCCccccccceecCCCCCCceEEEEecCCCCeEEEEeCCCeEEEEECCC
Q 048012 152 VSALAVDH---SG-SRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSDRFLCVTGSAQAKIYDRDG 227 (616)
Q Consensus 152 V~~v~~sp---~g-~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~s~d~~v~vwd~~~ 227 (616)
|++|++.. +| +.|+.||.|..||+|+-... + .+......|.+|.-... .+++.+..+|+|-+|+...
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e~------~--~Ei~e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~~ 72 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDEI------V--AEITETDKVTSLCSLGG-GRFAYALANGTVGVYDRSQ 72 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCCcE------E--EEEecccceEEEEEcCC-CEEEEEecCCEEEEEeCcc
Confidence 56666643 43 58999999999999985431 1 11224556888887766 5688899999999998643
Q ss_pred CeeeeEeeCceeEeecccCCCcccceEEEEEc---CCCCCEEEEEeCCCCEE
Q 048012 228 LTLGEFVKGDMYIRDLKNTKGHICGLTCGEWH---PKTKETILTSSEDGSLR 276 (616)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~---p~~~~~l~s~s~Dg~v~ 276 (616)
.. +. ++ ....+.++.+. -++...|++|-.+|.|-
T Consensus 73 Rl-WR----------iK----SK~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 73 RL-WR----------IK----SKNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred ee-ee----------ec----cCCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 22 21 11 11224555443 34445788888888764
No 376
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=96.96 E-value=0.57 Score=49.14 Aligned_cols=125 Identities=14% Similarity=0.185 Sum_probs=73.6
Q ss_pred CCcccEEEEEECCCC----CEEEEEEcCCcEEEEeCCCCcc---ccccceecCCCCCCc--eEEEEecCCCCeEEEEeCC
Q 048012 147 GHTKIVSALAVDHSG----SRVLSGSYDYTVRMYDFQGMNS---RLQSFRQLEPSEGHQ--VRNLSWSPTSDRFLCVTGS 217 (616)
Q Consensus 147 ~H~~~V~~v~~sp~g----~~lasgs~Dg~i~iwd~~~~~~---~~~~~~~~~~~~~~~--v~~l~~sp~g~~l~~~s~d 217 (616)
|.-..|..+.|.|-+ ..|+..-....|.||.+..... .+......+..+.-+ -..+.|+|....|++-+..
T Consensus 54 GqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~ 133 (671)
T PF15390_consen 54 GQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTAR 133 (671)
T ss_pred eccceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecC
Confidence 455679999999853 3455566778899999862211 110111111111111 2457899998887776665
Q ss_pred CeEEEEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEEEECCC
Q 048012 218 AQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNE 282 (616)
Q Consensus 218 ~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~ 282 (616)
..-.++++..... .++.-....+-|.|.+|..||.+++++.+..=.-+|||-..
T Consensus 134 dvSV~~sV~~d~s-----------rVkaDi~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~q 187 (671)
T PF15390_consen 134 DVSVLPSVHCDSS-----------RVKADIKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQ 187 (671)
T ss_pred ceeEeeeeeeCCc-----------eEEEeccCCceEEEEEecCcCCEEEEEeCCeEEEEEecCch
Confidence 5444555432211 01111234567999999999987777766666678998654
No 377
>PRK13616 lipoprotein LpqB; Provisional
Probab=96.88 E-value=0.074 Score=57.86 Aligned_cols=202 Identities=13% Similarity=0.133 Sum_probs=102.7
Q ss_pred cccEEEEEECCCCCEEEEEE------cCCcEEEEeCCCCccccccceecCCCCCCceEEEEecCCCCeEEEEeCC-CeEE
Q 048012 149 TKIVSALAVDHSGSRVLSGS------YDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSDRFLCVTGS-AQAK 221 (616)
Q Consensus 149 ~~~V~~v~~sp~g~~lasgs------~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~s~d-~~v~ 221 (616)
...+...+++|+|+.+|..- .|+.-.||-....... ..+.. +.....-.|+|+|..|++.... ..++
T Consensus 349 ~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~----~~lt~--g~~~t~PsWspDG~~lw~v~dg~~~~~ 422 (591)
T PRK13616 349 MGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVA----VQVLE--GHSLTRPSWSLDADAVWVVVDGNTVVR 422 (591)
T ss_pred ccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcc----eeeec--CCCCCCceECCCCCceEEEecCcceEE
Confidence 34678999999999887665 2444444433211111 22211 2237889999999988877543 2333
Q ss_pred EEECCC-CeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEE---EECCCccccceEEeeecc-C
Q 048012 222 IYDRDG-LTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRI---WDVNEFKSQKQVIKPKLA-R 296 (616)
Q Consensus 222 vwd~~~-~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~i---wd~~~~~~~~~~~~~~~~-~ 296 (616)
+.+..+ .++....-... .... .....|..+.|+|+|..+++.. ++.|.+ -....+. ..+...... .
T Consensus 423 v~~~~~~gql~~~~vd~g---e~~~--~~~g~Issl~wSpDG~RiA~i~--~g~v~Va~Vvr~~~G~--~~l~~~~~l~~ 493 (591)
T PRK13616 423 VIRDPATGQLARTPVDAS---AVAS--RVPGPISELQLSRDGVRAAMII--GGKVYLAVVEQTEDGQ--YALTNPREVGP 493 (591)
T ss_pred EeccCCCceEEEEeccCc---hhhh--ccCCCcCeEEECCCCCEEEEEE--CCEEEEEEEEeCCCCc--eeecccEEeec
Confidence 333221 12111100000 0110 2345699999999997555544 467776 3322222 222111111 1
Q ss_pred CCCccEEEEEECCCCCeEEEEeCCCcEEEEe--CCCCCCCCCceeeecCCCCCeEEEEEcCCCCeEEEEecCCcEEE
Q 048012 297 PGRVAVTTCAWDCDGKCIAGGIGDGSIQVWN--LKPGWGSRPDIHVEKGHSDDITALKFSSDGRILLSRSFDGSLKV 371 (616)
Q Consensus 297 ~~~~~v~~~~~sp~g~~l~~g~~dg~I~iwd--~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~v~l 371 (616)
.-...+.++.|..++.++ ++..++...+|. +... . .....-......+.+|+-+++ .|+....++.+.+
T Consensus 494 ~l~~~~~~l~W~~~~~L~-V~~~~~~~~v~~v~vDG~--~-~~~~~~~n~~~~v~~vaa~~~--~iyv~~~~g~~~l 564 (591)
T PRK13616 494 GLGDTAVSLDWRTGDSLV-VGRSDPEHPVWYVNLDGS--N-SDALPSRNLSAPVVAVAASPS--TVYVTDARAVLQL 564 (591)
T ss_pred ccCCccccceEecCCEEE-EEecCCCCceEEEecCCc--c-ccccCCCCccCceEEEecCCc--eEEEEcCCceEEe
Confidence 111135788999998855 555555444554 4432 1 111011112466788887763 4555555664433
No 378
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=96.88 E-value=0.064 Score=43.56 Aligned_cols=96 Identities=17% Similarity=0.284 Sum_probs=61.9
Q ss_pred EcCCCCCEEEEEeCCCCEEEEECCCccccceEEeeeccCCCCccEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCCCCCc
Q 048012 258 WHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWDCDGKCIAGGIGDGSIQVWNLKPGWGSRPD 337 (616)
Q Consensus 258 ~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~g~~dg~I~iwd~~~~~~~~~~ 337 (616)
|.-++.+.|++|+.|..||+|+-.. ....+.. ...|++++-... ..++.+..+|+|-+|+-.. ..
T Consensus 10 ~d~dg~~eLlvGs~D~~IRvf~~~e--~~~Ei~e-------~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~~-----Rl 74 (111)
T PF14783_consen 10 FDGDGENELLVGSDDFEIRVFKGDE--IVAEITE-------TDKVTSLCSLGG-GRFAYALANGTVGVYDRSQ-----RL 74 (111)
T ss_pred cCCCCcceEEEecCCcEEEEEeCCc--EEEEEec-------ccceEEEEEcCC-CEEEEEecCCEEEEEeCcc-----ee
Confidence 4445668999999999999998542 2222211 116778776655 6688899999999998643 12
Q ss_pred eeeecCCCCCeEEEEEcC---CC-CeEEEEecCCcEE
Q 048012 338 IHVEKGHSDDITALKFSS---DG-RILLSRSFDGSLK 370 (616)
Q Consensus 338 ~~~~~~h~~~V~~l~~sp---dg-~~l~s~s~Dg~v~ 370 (616)
-..... ..++++++.. || .-|++|=.+|.|-
T Consensus 75 WRiKSK--~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 75 WRIKSK--NQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred eeeccC--CCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 222222 2366666544 22 2677887788764
No 379
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=96.86 E-value=0.55 Score=46.35 Aligned_cols=275 Identities=12% Similarity=0.111 Sum_probs=124.1
Q ss_pred CcccEEEEEECCCCCEEEEEEcCCcEEEEeCCCCccccccceecCCC-CCCceEEEEecCCCCeEEEEeCCCeEEEEECC
Q 048012 148 HTKIVSALAVDHSGSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPS-EGHQVRNLSWSPTSDRFLCVTGSAQAKIYDRD 226 (616)
Q Consensus 148 H~~~V~~v~~sp~g~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~-~~~~v~~l~~sp~g~~l~~~s~d~~v~vwd~~ 226 (616)
-...+..|.|.....-+|+|. .+. |+....+.........-... ......+|.|..+ ..++ ++..+ +.+...+
T Consensus 15 t~~~l~dV~F~d~~~G~~VG~-~g~--il~T~DGG~tW~~~~~~~~~~~~~~l~~I~f~~~-~g~i-vG~~g-~ll~T~D 88 (302)
T PF14870_consen 15 TDKPLLDVAFVDPNHGWAVGA-YGT--ILKTTDGGKTWQPVSLDLDNPFDYHLNSISFDGN-EGWI-VGEPG-LLLHTTD 88 (302)
T ss_dssp -SS-EEEEEESSSS-EEEEET-TTE--EEEESSTTSS-EE-----S-----EEEEEEEETT-EEEE-EEETT-EEEEESS
T ss_pred CCCceEEEEEecCCEEEEEec-CCE--EEEECCCCccccccccCCCccceeeEEEEEecCC-ceEE-EcCCc-eEEEecC
Confidence 345889999986555666654 454 34444433333322211111 1234677888643 3333 44444 4445555
Q ss_pred CCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEEEECCCccccceEEeeeccCCCCccEEEEE
Q 048012 227 GLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPGRVAVTTCA 306 (616)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~ 306 (616)
++.-++.... ...+.+.. ..+....++ .+...+..|.| |-..++....+.... .....+..+.
T Consensus 89 gG~tW~~v~l------~~~lpgs~---~~i~~l~~~--~~~l~~~~G~i--y~T~DgG~tW~~~~~----~~~gs~~~~~ 151 (302)
T PF14870_consen 89 GGKTWERVPL------SSKLPGSP---FGITALGDG--SAELAGDRGAI--YRTTDGGKTWQAVVS----ETSGSINDIT 151 (302)
T ss_dssp TTSS-EE----------TT-SS-E---EEEEEEETT--EEEEEETT--E--EEESSTTSSEEEEE-----S----EEEEE
T ss_pred CCCCcEEeec------CCCCCCCe---eEEEEcCCC--cEEEEcCCCcE--EEeCCCCCCeeEccc----CCcceeEeEE
Confidence 5543332110 01122222 222222222 33334444543 333333333222221 1123688888
Q ss_pred ECCCCCeEEEEeCCCcEEEEeCCCCCCCCCceeeecCCCCCeEEEEEcCCCCeEEEEecCCcEEEEeCCCCCCcc-eE-e
Q 048012 307 WDCDGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHSDDITALKFSSDGRILLSRSFDGSLKVWDLRKMKEPL-KV-F 384 (616)
Q Consensus 307 ~sp~g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~v~lwd~~~~~~~~-~~-~ 384 (616)
.+++|++++++..-..+.-||--.. .-......-...|.+|.|.|++.+.+.+ ..|.|++=+........ .. .
T Consensus 152 r~~dG~~vavs~~G~~~~s~~~G~~----~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~~w~~~~~ 226 (302)
T PF14870_consen 152 RSSDGRYVAVSSRGNFYSSWDPGQT----TWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGETWSEPII 226 (302)
T ss_dssp E-TTS-EEEEETTSSEEEEE-TT-S----S-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEEEE---B-
T ss_pred ECCCCcEEEEECcccEEEEecCCCc----cceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCCCccccccccC
Confidence 9999999988865555567775421 1222233345789999999998876654 77888887622111100 00 1
Q ss_pred cCCCCCCcceeEEECCCCCEEEEeeccccccCCCceEEEEeCCCCceEEEEecC--CCCCeEEEEEcCCCCcEEEEe
Q 048012 385 EDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREKLELVSRVGIS--PACSVVQCAWHPKLNQIFATA 459 (616)
Q Consensus 385 ~~~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~~~~~~~~~~~--~~~~v~~~~~~p~~~~l~~~~ 459 (616)
........+..++|.+++...++|+ .|.| +.....|+-=.+.... -...+..+.|....+-++.+.
T Consensus 227 ~~~~~~~~~ld~a~~~~~~~wa~gg--------~G~l-~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~lG~ 294 (302)
T PF14870_consen 227 PIKTNGYGILDLAYRPPNEIWAVGG--------SGTL-LVSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFVLGQ 294 (302)
T ss_dssp TTSS--S-EEEEEESSSS-EEEEES--------TT-E-EEESSTTSS-EE-GGGTTSSS---EEEEEETTEEEEE-S
T ss_pred CcccCceeeEEEEecCCCCEEEEeC--------CccE-EEeCCCCccceECccccCCCCceEEEEEcCCCceEEECC
Confidence 1112344588999999999998886 4544 6666677665555431 234578888876644444444
No 380
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.80 E-value=0.1 Score=48.60 Aligned_cols=132 Identities=15% Similarity=0.139 Sum_probs=84.8
Q ss_pred CCeEEEEeCCCcEEEEeCCCCCCCCCceeeecCCCCCeEEEEEcCCCCeEEEEecCCcEEEEeCCCCCCcceEecCCCCC
Q 048012 311 GKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHSDDITALKFSSDGRILLSRSFDGSLKVWDLRKMKEPLKVFEDLPNN 390 (616)
Q Consensus 311 g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~ 390 (616)
..+++.|+..+.+.-.|..++. .+ -..--...|.+-+.- -|++++.|...|.+++.+..++..... +.....
T Consensus 23 kT~v~igSHs~~~~avd~~sG~----~~-We~ilg~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~-f~~~~~- 94 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGN----LI-WEAILGVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWN-FVILET- 94 (354)
T ss_pred ceEEEEecCCceEEEecCCCCc----EE-eehhhCceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheee-eeehhh-
Confidence 4577788888888888888762 21 111122233322221 477899999999999999998654322 222111
Q ss_pred CcceeEEECCCCCEEEEeeccccccCCCceEEEEeCCCCceEEEEecCCCCCeEEEEEcCCCCcEEEEe
Q 048012 391 YAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREKLELVSRVGISPACSVVQCAWHPKLNQIFATA 459 (616)
Q Consensus 391 ~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~ 459 (616)
.-......+++.+|.+|+ .|++.+..|.++..++.+.+.. ++...+-+..|-...|+++.
T Consensus 95 -vk~~a~~d~~~glIycgs-------hd~~~yalD~~~~~cVykskcg-G~~f~sP~i~~g~~sly~a~ 154 (354)
T KOG4649|consen 95 -VKVRAQCDFDGGLIYCGS-------HDGNFYALDPKTYGCVYKSKCG-GGTFVSPVIAPGDGSLYAAI 154 (354)
T ss_pred -hccceEEcCCCceEEEec-------CCCcEEEecccccceEEecccC-CceeccceecCCCceEEEEe
Confidence 123355678999999999 9999999999999999988763 23333345555333444443
No 381
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=96.79 E-value=0.99 Score=48.45 Aligned_cols=208 Identities=12% Similarity=0.057 Sum_probs=106.1
Q ss_pred CCeEEEEeCCCeEEEEECCCCe-eeeEeeCceeEeecccCCCcccceE-EEEEcCCCCCEEEEEeCCCCEEEEECCCccc
Q 048012 208 SDRFLCVTGSAQAKIYDRDGLT-LGEFVKGDMYIRDLKNTKGHICGLT-CGEWHPKTKETILTSSEDGSLRIWDVNEFKS 285 (616)
Q Consensus 208 g~~l~~~s~d~~v~vwd~~~~~-~~~~~~~~~~~~~~~~~~~h~~~v~-~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~ 285 (616)
+..+++++.++.|.-+|..+++ ++.+...... .......+. .+... +...++.++.++.|+.+|..+++.
T Consensus 61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~------~~~~~~~~~~g~~~~--~~~~V~v~~~~g~v~AlD~~TG~~ 132 (488)
T cd00216 61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPA------DRGCCDVVNRGVAYW--DPRKVFFGTFDGRLVALDAETGKQ 132 (488)
T ss_pred CCEEEEeCCCCcEEEEECCCChhhceeCCCCCc------cccccccccCCcEEc--cCCeEEEecCCCeEEEEECCCCCE
Confidence 3456667778888888876544 3332111100 000000000 11111 114777888899999999999877
Q ss_pred cceEEeeeccCCCCccEE-EEEECCCCCeEEEEe---------CCCcEEEEeCCCCCCCCCceeeecCC-----------
Q 048012 286 QKQVIKPKLARPGRVAVT-TCAWDCDGKCIAGGI---------GDGSIQVWNLKPGWGSRPDIHVEKGH----------- 344 (616)
Q Consensus 286 ~~~~~~~~~~~~~~~~v~-~~~~sp~g~~l~~g~---------~dg~I~iwd~~~~~~~~~~~~~~~~h----------- 344 (616)
........... ....+. +..+. +.++++++ .+|.|..+|..++. .+-.....
T Consensus 133 ~W~~~~~~~~~-~~~~i~ssP~v~--~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~----~~W~~~~~~~~~~~~~~~~ 205 (488)
T cd00216 133 VWKFGNNDQVP-PGYTMTGAPTIV--KKLVIIGSSGAEFFACGVRGALRAYDVETGK----LLWRFYTTEPDPNAFPTWG 205 (488)
T ss_pred eeeecCCCCcC-cceEecCCCEEE--CCEEEEeccccccccCCCCcEEEEEECCCCc----eeeEeeccCCCcCCCCCCC
Confidence 66543221100 000011 11111 24455553 36788888988773 22211110
Q ss_pred --------C-CCe-EEEEEcCCCCeEEEEecCC------------------cEEEEeCCCCCCcceEecCCCCC---Ccc
Q 048012 345 --------S-DDI-TALKFSSDGRILLSRSFDG------------------SLKVWDLRKMKEPLKVFEDLPNN---YAQ 393 (616)
Q Consensus 345 --------~-~~V-~~l~~spdg~~l~s~s~Dg------------------~v~lwd~~~~~~~~~~~~~~~~~---~~v 393 (616)
. ..| .+.++.+.+.+++.++.++ .|.-+|+.+++..-+........ ...
T Consensus 206 ~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~ 285 (488)
T cd00216 206 PDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGP 285 (488)
T ss_pred CCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccC
Confidence 0 011 1344555566777777665 68888888766543321111100 000
Q ss_pred eeEEEC----CCCC---EEEEeeccccccCCCceEEEEeCCCCceEEEEec
Q 048012 394 TNVAFS----PDEQ---LFLTGTSVERESTTGGLLCFYDREKLELVSRVGI 437 (616)
Q Consensus 394 ~~v~fs----pdg~---~l~~gs~~~~~~~~dg~i~iwd~~~~~~~~~~~~ 437 (616)
....+. -++. ++++++ .+|.|+.+|..+|+.+-....
T Consensus 286 s~p~~~~~~~~~g~~~~~V~~g~-------~~G~l~ald~~tG~~~W~~~~ 329 (488)
T cd00216 286 NQPSLADIKPKDGKPVPAIVHAP-------KNGFFYVLDRTTGKLISARPE 329 (488)
T ss_pred CCCeEEeccccCCCeeEEEEEEC-------CCceEEEEECCCCcEeeEeEe
Confidence 111111 1333 567777 789999999999999877643
No 382
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.73 E-value=0.0069 Score=66.71 Aligned_cols=107 Identities=15% Similarity=0.249 Sum_probs=77.5
Q ss_pred CCCeEEEEecCCcEEEEeCCCCCCcceEecCCCCCCcceeEEECCCCCEEEEeeccccccCCCceEEEEeCCCCceEEEE
Q 048012 356 DGRILLSRSFDGSLKVWDLRKMKEPLKVFEDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREKLELVSRV 435 (616)
Q Consensus 356 dg~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~~~~~~~~ 435 (616)
.+-.++.|+..|.|.+.|++..-.+ ...+....++|++++|+.+|++++.|- .+|.|.+||+.+++.++.+
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~~--~~~ne~v~~~Vtsvafn~dg~~l~~G~-------~~G~V~v~D~~~~k~l~~i 168 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLGP--LHQNERVQGPVTSVAFNQDGSLLLAGL-------GDGHVTVWDMHRAKILKVI 168 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccch--hhcCCccCCcceeeEecCCCceecccc-------CCCcEEEEEccCCcceeee
Confidence 4567888998999999988753222 233444567899999999999999998 8999999999999888877
Q ss_pred ecC--CCCCeEEEEEcCCCCcEEEEeccCCCCceEEEecccCCC
Q 048012 436 GIS--PACSVVQCAWHPKLNQIFATAGDKSQGGTHILYDPRLSE 477 (616)
Q Consensus 436 ~~~--~~~~v~~~~~~p~~~~l~~~~~d~~~~~~~~v~~~~~s~ 477 (616)
... +...|..+.|..++..++++.. + ..+|.+.|+.
T Consensus 169 ~e~~ap~t~vi~v~~t~~nS~llt~D~----~--Gsf~~lv~nk 206 (1206)
T KOG2079|consen 169 TEHGAPVTGVIFVGRTSQNSKLLTSDT----G--GSFWKLVFNK 206 (1206)
T ss_pred eecCCccceEEEEEEeCCCcEEEEccC----C--CceEEEEech
Confidence 542 2344666667666665555543 3 3377777654
No 383
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=96.70 E-value=0.42 Score=44.05 Aligned_cols=146 Identities=14% Similarity=0.306 Sum_probs=86.5
Q ss_pred cEEEEEECCCCCeEEEEeCC---------CcEEEEeCCCCCCCCCceeeecCCCCCeEEEEEcCCCCeEEE-EecCCcEE
Q 048012 301 AVTTCAWDCDGKCIAGGIGD---------GSIQVWNLKPGWGSRPDIHVEKGHSDDITALKFSSDGRILLS-RSFDGSLK 370 (616)
Q Consensus 301 ~v~~~~~sp~g~~l~~g~~d---------g~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s-~s~Dg~v~ 370 (616)
..+.-..+|+|++++-...| |.++.|-... .+......-.--+.|+|+.+.+.+.. -+.+-+|.
T Consensus 110 R~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~h------~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~ 183 (310)
T KOG4499|consen 110 RLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAGH------QVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVD 183 (310)
T ss_pred ccccCccCCCCceeeeeeccccccccccccEEEEeccCC------CceeeehhccCCccccccccCcEEEEEccCceEEe
Confidence 45566778999985433332 3444444321 11111112222357889887776554 44566777
Q ss_pred EEe--CCCCC--CcceEe--cC-CC-CCCcceeEEECCCCCEEEEeeccccccCCCceEEEEeCCCCceEEEEecCCCCC
Q 048012 371 VWD--LRKMK--EPLKVF--ED-LP-NNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREKLELVSRVGISPACS 442 (616)
Q Consensus 371 lwd--~~~~~--~~~~~~--~~-~~-~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 442 (616)
-|| ..++. .+..++ .. .+ ..-..-.+++.-+|.+.+++- ..++|..+|..+|+.+..+.++ ...
T Consensus 184 a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~-------ng~~V~~~dp~tGK~L~eiklP-t~q 255 (310)
T KOG4499|consen 184 AYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATF-------NGGTVQKVDPTTGKILLEIKLP-TPQ 255 (310)
T ss_pred eeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEe-------cCcEEEEECCCCCcEEEEEEcC-CCc
Confidence 787 33321 111111 11 00 111123456677888888877 7899999999999999999985 678
Q ss_pred eEEEEEcC-CCCcEEEEec
Q 048012 443 VVQCAWHP-KLNQIFATAG 460 (616)
Q Consensus 443 v~~~~~~p-~~~~l~~~~~ 460 (616)
|++|+|-- +...+++++.
T Consensus 256 itsccFgGkn~d~~yvT~a 274 (310)
T KOG4499|consen 256 ITSCCFGGKNLDILYVTTA 274 (310)
T ss_pred eEEEEecCCCccEEEEEeh
Confidence 99999974 3455555554
No 384
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=96.70 E-value=0.0038 Score=56.92 Aligned_cols=105 Identities=19% Similarity=0.246 Sum_probs=67.8
Q ss_pred CEEEEEeCCCCEEEEECCCccccceEEeeeccCCCCccEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCCCCCceeeecC
Q 048012 264 ETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWDCDGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKG 343 (616)
Q Consensus 264 ~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~ 343 (616)
.-+++|+.+|.|.+|+............. ........+.-..++.+..+++.||.||.|++.-+ +.+.....
T Consensus 71 ~~~~vG~~dg~v~~~n~n~~g~~~d~~~s----~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~----k~~g~~g~ 142 (238)
T KOG2444|consen 71 AKLMVGTSDGAVYVFNWNLEGAHSDRVCS----GEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPN----KVLGYVGQ 142 (238)
T ss_pred ceEEeecccceEEEecCCccchHHHhhhc----ccccceeccccccccceeEEeccCCceeeeccccC----ceeeeecc
Confidence 47899999999999998733222211111 11111223333345678899999999999999854 55666666
Q ss_pred CC-CCeEEEEEcCCCCeEEEE--ecCCcEEEEeCCC
Q 048012 344 HS-DDITALKFSSDGRILLSR--SFDGSLKVWDLRK 376 (616)
Q Consensus 344 h~-~~V~~l~~spdg~~l~s~--s~Dg~v~lwd~~~ 376 (616)
|. .++..+..+..++.|+.+ |.|..++.|++..
T Consensus 143 h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 143 HNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred ccCCCcceeEEecCCceEEeeccccchhhhhcchhh
Confidence 66 555555556666667766 7777777777764
No 385
>PRK13616 lipoprotein LpqB; Provisional
Probab=96.67 E-value=0.2 Score=54.53 Aligned_cols=184 Identities=14% Similarity=0.132 Sum_probs=93.0
Q ss_pred CceEEEEecCCCCeEEEEe------CCC--eEEEEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEE
Q 048012 197 HQVRNLSWSPTSDRFLCVT------GSA--QAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILT 268 (616)
Q Consensus 197 ~~v~~l~~sp~g~~l~~~s------~d~--~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s 268 (616)
..+.+.+++|+|+.++... .+. .+.+++..+.. .. + +.+. ..+.-.|+|++. .|++
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~-~~----------l--t~g~--~~t~PsWspDG~-~lw~ 413 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVA-VQ----------V--LEGH--SLTRPSWSLDAD-AVWV 413 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcc-ee----------e--ecCC--CCCCceECCCCC-ceEE
Confidence 3578899999999988766 233 45554543222 11 1 1222 367788999875 4555
Q ss_pred EeCC-CCEEEEECCCccccceEEeee--ccCCCCccEEEEEECCCCCeEEEEeCCCcEEE---EeCCCCCCCCCc--eee
Q 048012 269 SSED-GSLRIWDVNEFKSQKQVIKPK--LARPGRVAVTTCAWDCDGKCIAGGIGDGSIQV---WNLKPGWGSRPD--IHV 340 (616)
Q Consensus 269 ~s~D-g~v~iwd~~~~~~~~~~~~~~--~~~~~~~~v~~~~~sp~g~~l~~g~~dg~I~i---wd~~~~~~~~~~--~~~ 340 (616)
.... ..+++.+-........+.... ........|..+.|+|||..|+... +|.|++ -....+ ...+ ...
T Consensus 414 v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G--~~~l~~~~~ 490 (591)
T PRK13616 414 VVDGNTVVRVIRDPATGQLARTPVDASAVASRVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDG--QYALTNPRE 490 (591)
T ss_pred EecCcceEEEeccCCCceEEEEeccCchhhhccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCC--ceeecccEE
Confidence 4422 223333321111111000000 0001123699999999999888766 577777 333333 1111 111
Q ss_pred e-cCCCCCeEEEEEcCCCCeEEEEecCCcEEEEeCCCCCCcceEecCCCCCCcceeEEECC
Q 048012 341 E-KGHSDDITALKFSSDGRILLSRSFDGSLKVWDLRKMKEPLKVFEDLPNNYAQTNVAFSP 400 (616)
Q Consensus 341 ~-~~h~~~V~~l~~spdg~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~v~~v~fsp 400 (616)
+ ..-...+.++.|..++.++ ++..++...+|.+.-.+.....+........+..|+=++
T Consensus 491 l~~~l~~~~~~l~W~~~~~L~-V~~~~~~~~v~~v~vDG~~~~~~~~~n~~~~v~~vaa~~ 550 (591)
T PRK13616 491 VGPGLGDTAVSLDWRTGDSLV-VGRSDPEHPVWYVNLDGSNSDALPSRNLSAPVVAVAASP 550 (591)
T ss_pred eecccCCccccceEecCCEEE-EEecCCCCceEEEecCCccccccCCCCccCceEEEecCC
Confidence 2 2233346889999999865 444444444554432222122212211234466666665
No 386
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=96.57 E-value=1.5 Score=48.76 Aligned_cols=237 Identities=13% Similarity=0.098 Sum_probs=120.2
Q ss_pred eEEEEecCCCCeEEEEeCCCeEEEEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCC--CCC---EEEEEeCCC
Q 048012 199 VRNLSWSPTSDRFLCVTGSAQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPK--TKE---TILTSSEDG 273 (616)
Q Consensus 199 v~~l~~sp~g~~l~~~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~--~~~---~l~s~s~Dg 273 (616)
++....+.+...++++++++.+...++....+.+. ..+.....|.|+.++|- +.+ +++.|.++.
T Consensus 490 ~ti~~~~~n~sqVvvA~~~~~l~y~~i~~~~l~e~-----------~~~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~ 558 (1096)
T KOG1897|consen 490 ITIGVVSANASQVVVAGGGLALFYLEIEDGGLREV-----------SHKEFEYEVACLDISPLGDAPNKSRLLAVGLWSD 558 (1096)
T ss_pred eEEEEEeecceEEEEecCccEEEEEEeeccceeee-----------eeheecceeEEEecccCCCCCCcceEEEEEeecc
Confidence 34444444555677777777776666654443221 12334567899999875 344 788888877
Q ss_pred CEEEEECCCccccceEEeeeccCCCCccEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCCCCCceeeecCCCCCeEEEEE
Q 048012 274 SLRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWDCDGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHSDDITALKF 353 (616)
Q Consensus 274 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~ 353 (616)
.+.+.-.......... .......-.-.|.-.++--+..+|.++..||.+..|-+..............-...++.--.|
T Consensus 559 ~~~~l~~~pd~~~~~~-~~l~~~~iPRSIl~~~~e~d~~yLlvalgdG~l~~fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f 637 (1096)
T KOG1897|consen 559 ISMILTFLPDLILITH-EQLSGEIIPRSILLTTFEGDIHYLLVALGDGALLYFVLDINTGQLSDRKKVTLGTQPISLRTF 637 (1096)
T ss_pred eEEEEEECCCcceeee-eccCCCccchheeeEEeeccceEEEEEcCCceEEEEEEEcccceEccccccccCCCCcEEEEE
Confidence 7655433211111000 000000011135555666678999999999999877555431111111211223345655566
Q ss_pred cCCCCeEEEEecCCcEEEEeCCCCCCcceEecCCCCCCcceeEEECCC--CCEEEEeeccccccCCCceEEEEeCCCCce
Q 048012 354 SSDGRILLSRSFDGSLKVWDLRKMKEPLKVFEDLPNNYAQTNVAFSPD--EQLFLTGTSVERESTTGGLLCFYDREKLEL 431 (616)
Q Consensus 354 spdg~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~v~~v~fspd--g~~l~~gs~~~~~~~~dg~i~iwd~~~~~~ 431 (616)
+..++.-+-+..|.-..+|--+. +. .+........-.-+.|+.+ ...|+.+. .+.+.|.-+..-+.
T Consensus 638 ~sk~~t~vfa~sdrP~viY~~n~-kL---v~spls~kev~~~c~f~s~a~~d~l~~~~--------~~~l~i~tid~iqk 705 (1096)
T KOG1897|consen 638 SSKSRTAVFALSDRPTVIYSSNG-KL---VYSPLSLKEVNHMCPFNSDAYPDSLASAN--------GGALTIGTIDEIQK 705 (1096)
T ss_pred eeCCceEEEEeCCCCEEEEecCC-cE---EEeccchHHhhhhcccccccCCceEEEec--------CCceEEEEecchhh
Confidence 65554444444466556665442 21 1111111000011233332 34455553 56777777766554
Q ss_pred EEEEecCCCCCeEEEEEcCCCCcEEEEec
Q 048012 432 VSRVGISPACSVVQCAWHPKLNQIFATAG 460 (616)
Q Consensus 432 ~~~~~~~~~~~v~~~~~~p~~~~l~~~~~ 460 (616)
++.-.++-......+++++. .+++....
T Consensus 706 l~irtvpl~~~prrI~~q~~-sl~~~v~s 733 (1096)
T KOG1897|consen 706 LHIRTVPLGESPRRICYQES-SLTFGVLS 733 (1096)
T ss_pred cceeeecCCCChhheEeccc-ceEEEEEe
Confidence 43333445567888888884 33443333
No 387
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.48 E-value=0.77 Score=43.70 Aligned_cols=149 Identities=15% Similarity=0.149 Sum_probs=89.5
Q ss_pred EEEEECCCC-CeEEEEeCCCc-EEEEeCCCCCCCCCceeeecCCCC--CeEEEEEcCCCCeEEEEecC-----CcEEEEe
Q 048012 303 TTCAWDCDG-KCIAGGIGDGS-IQVWNLKPGWGSRPDIHVEKGHSD--DITALKFSSDGRILLSRSFD-----GSLKVWD 373 (616)
Q Consensus 303 ~~~~~sp~g-~~l~~g~~dg~-I~iwd~~~~~~~~~~~~~~~~h~~--~V~~l~~spdg~~l~s~s~D-----g~v~lwd 373 (616)
..++|+|.- +-++.+-.-|+ ..+||..... ....+...++ -.-.=.|||||.+|+..-.| |.|-|||
T Consensus 71 Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~----~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd 146 (366)
T COG3490 71 HGIAFHPALPRAVAFARRPGTFAMVFDPNGAQ----EPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYD 146 (366)
T ss_pred CCeecCCCCcceEEEEecCCceEEEECCCCCc----CcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEe
Confidence 345677643 34555555554 4678887652 2212111111 11123699999999887544 6799999
Q ss_pred CCCCCCcceEecCCCCCCcceeEEECCCCCEEEEeecccc-----------ccCCCceEEEEeCCCCceEEEEecC---C
Q 048012 374 LRKMKEPLKVFEDLPNNYAQTNVAFSPDEQLFLTGTSVER-----------ESTTGGLLCFYDREKLELVSRVGIS---P 439 (616)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~gs~~~~-----------~~~~dg~i~iwd~~~~~~~~~~~~~---~ 439 (616)
.+..-..+-.+.. +.-....+.|.+||+.|+.+..... .....-.+.+.|..+|+++.+...+ +
T Consensus 147 ~r~~fqrvgE~~t--~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~ 224 (366)
T COG3490 147 AREGFQRVGEFST--HGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLR 224 (366)
T ss_pred cccccceeccccc--CCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhh
Confidence 9864443434433 3333667999999999998763100 0113346778888888888776654 2
Q ss_pred CCCeEEEEEcCCCCcEEE
Q 048012 440 ACSVVQCAWHPKLNQIFA 457 (616)
Q Consensus 440 ~~~v~~~~~~p~~~~l~~ 457 (616)
.-+|.-+...+++..++.
T Consensus 225 ~lSiRHld~g~dgtvwfg 242 (366)
T COG3490 225 QLSIRHLDIGRDGTVWFG 242 (366)
T ss_pred hcceeeeeeCCCCcEEEE
Confidence 345777788887554443
No 388
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=96.42 E-value=0.56 Score=44.81 Aligned_cols=185 Identities=17% Similarity=0.119 Sum_probs=109.3
Q ss_pred eEEEEEcCCCCCEEEEEeCCC--CEEEEECCCccccceEEeeeccCCCCccEEEEEECCCCCeEEEEeCCCcEEEEeCCC
Q 048012 253 LTCGEWHPKTKETILTSSEDG--SLRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWDCDGKCIAGGIGDGSIQVWNLKP 330 (616)
Q Consensus 253 v~~~~~~p~~~~~l~s~s~Dg--~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~g~~dg~I~iwd~~~ 330 (616)
...+.|..++ .++-+.+.-| .|+.+|+.+++.......+... ---.++.. ++++....-.++...+||..+
T Consensus 47 TQGL~~~~~g-~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~-----FgEGit~~-~d~l~qLTWk~~~~f~yd~~t 119 (264)
T PF05096_consen 47 TQGLEFLDDG-TLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRY-----FGEGITIL-GDKLYQLTWKEGTGFVYDPNT 119 (264)
T ss_dssp EEEEEEEETT-EEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT-------EEEEEEE-TTEEEEEESSSSEEEEEETTT
T ss_pred CccEEecCCC-EEEEeCCCCCcEEEEEEECCCCcEEEEEECCccc-----cceeEEEE-CCEEEEEEecCCeEEEEcccc
Confidence 4466775544 4677777655 6999999987755444332211 11222222 334555556789999999986
Q ss_pred CCCCCCceeeecCCCCCeEEEEEcCCCCeEEEEecCCcEEEEeCCCCCCcceEecCCCCCC---cceeEEECCCCCEEEE
Q 048012 331 GWGSRPDIHVEKGHSDDITALKFSSDGRILLSRSFDGSLKVWDLRKMKEPLKVFEDLPNNY---AQTNVAFSPDEQLFLT 407 (616)
Q Consensus 331 ~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~---~v~~v~fspdg~~l~~ 407 (616)
. ..+..+. ..+.=+.|+ .|+..|+.......|+++|..+... ...+.-..... .+..+.|- +|...|-
T Consensus 120 l----~~~~~~~-y~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~-~~~i~V~~~g~pv~~LNELE~i-~G~IyAN 190 (264)
T PF05096_consen 120 L----KKIGTFP-YPGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKE-VRTIQVTDNGRPVSNLNELEYI-NGKIYAN 190 (264)
T ss_dssp T----EEEEEEE--SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SE-EEEEE-EETTEE---EEEEEEE-TTEEEEE
T ss_pred c----eEEEEEe-cCCcceEEE--cCCCEEEEECCccceEEECCcccce-EEEEEEEECCEECCCcEeEEEE-cCEEEEE
Confidence 4 3444433 234556776 4677777777778899999887543 22222211222 24445664 5665555
Q ss_pred eeccccccCCCceEEEEeCCCCceEEEEecC--------------CCCCeEEEEEcCCCCcEEEEec
Q 048012 408 GTSVERESTTGGLLCFYDREKLELVSRVGIS--------------PACSVVQCAWHPKLNQIFATAG 460 (616)
Q Consensus 408 gs~~~~~~~~dg~i~iwd~~~~~~~~~~~~~--------------~~~~v~~~~~~p~~~~l~~~~~ 460 (616)
.- ....|...|..+|+++..+.++ ...-.+.++|+|..+.|++++.
T Consensus 191 VW-------~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK 250 (264)
T PF05096_consen 191 VW-------QTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGK 250 (264)
T ss_dssp ET-------TSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEET
T ss_pred eC-------CCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeC
Confidence 54 6778889999999998887431 1245788999999888888875
No 389
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.41 E-value=0.95 Score=43.47 Aligned_cols=178 Identities=11% Similarity=0.082 Sum_probs=106.3
Q ss_pred cCCcccEEEEEECCCCCEEEEEEcCCcEEEEeCCCCccccccceecCCCCCCceEEEEecCCCCeEEEEeCCCeEEEEEC
Q 048012 146 KGHTKIVSALAVDHSGSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSDRFLCVTGSAQAKIYDR 225 (616)
Q Consensus 146 ~~H~~~V~~v~~sp~g~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~s~d~~v~vwd~ 225 (616)
.|-+..|.++.|+|+.+.|++......-.||=...++ .++.+.-..-+..-.+.|.-++++.++--.++.+.++.+
T Consensus 82 ~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~Gd----lirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~v 157 (316)
T COG3204 82 LGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGD----LIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTV 157 (316)
T ss_pred ccccccccceeeCCCcceEEEecCCCceEEEEecCCc----eEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEE
Confidence 3445569999999999988887776666666332221 122222122233556788888887777777888888887
Q ss_pred CCCe-eeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEEEECCCccccceEEeeeccCCC----Cc
Q 048012 226 DGLT-LGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPG----RV 300 (616)
Q Consensus 226 ~~~~-~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~----~~ 300 (616)
+... +.... ...-.+........+...++|.|.+. .|+.+-.-.-++||.+.................. -.
T Consensus 158 d~~t~~~~~~---~~~i~L~~~~k~N~GfEGlA~d~~~~-~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~ 233 (316)
T COG3204 158 DADTTVISAK---VQKIPLGTTNKKNKGFEGLAWDPVDH-RLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVL 233 (316)
T ss_pred cCCccEEecc---ceEEeccccCCCCcCceeeecCCCCc-eEEEEEccCCcEEEEEecCCcccccccccCcccccceEee
Confidence 7542 21111 11112333333477889999999874 6666666666777776533211111111000000 01
Q ss_pred cEEEEEECC-CCCeEEEEeCCCcEEEEeCCCC
Q 048012 301 AVTTCAWDC-DGKCIAGGIGDGSIQVWNLKPG 331 (616)
Q Consensus 301 ~v~~~~~sp-~g~~l~~g~~dg~I~iwd~~~~ 331 (616)
.|.++.|++ .+.+|+-+.+++.|.-.|....
T Consensus 234 DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G~ 265 (316)
T COG3204 234 DVSGLEFNAITNSLLVLSDESRRLLEVDLSGE 265 (316)
T ss_pred ccccceecCCCCcEEEEecCCceEEEEecCCC
Confidence 467788886 4667777888888888887653
No 390
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.40 E-value=0.013 Score=64.67 Aligned_cols=96 Identities=24% Similarity=0.353 Sum_probs=67.9
Q ss_pred CCCeEEEEeCCCcEEEEeCCCCCCCCCceeeecCCCCCeEEEEEcCCCCeEEEEecCCcEEEEeCCCCCCcceEecCCCC
Q 048012 310 DGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHSDDITALKFSSDGRILLSRSFDGSLKVWDLRKMKEPLKVFEDLPN 389 (616)
Q Consensus 310 ~g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~ 389 (616)
.+..++.|+..|.|...|++.+ ..+ ...-..-.++|++++|+.+|.+++.|-.+|.|.+||+...+ +++.+..+.+
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~n--L~~-~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k-~l~~i~e~~a 173 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGN--LGP-LHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAK-ILKVITEHGA 173 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcc--cch-hhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCc-ceeeeeecCC
Confidence 4567899999999999998864 111 22223345789999999999999999999999999998643 4555544322
Q ss_pred -CCcceeEEECCCCCEEEEee
Q 048012 390 -NYAQTNVAFSPDEQLFLTGT 409 (616)
Q Consensus 390 -~~~v~~v~fspdg~~l~~gs 409 (616)
...+..+.+..++..++++.
T Consensus 174 p~t~vi~v~~t~~nS~llt~D 194 (1206)
T KOG2079|consen 174 PVTGVIFVGRTSQNSKLLTSD 194 (1206)
T ss_pred ccceEEEEEEeCCCcEEEEcc
Confidence 22344455556666777776
No 391
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=96.35 E-value=1.1 Score=46.01 Aligned_cols=159 Identities=14% Similarity=0.110 Sum_probs=78.7
Q ss_pred ccEEEEEECCCCCEEEEEE-----------cCC-cEEEEeCCCCccccccceecCCCCCCceEEEEecCCCCeEEEEeCC
Q 048012 150 KIVSALAVDHSGSRVLSGS-----------YDY-TVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSDRFLCVTGS 217 (616)
Q Consensus 150 ~~V~~v~~sp~g~~lasgs-----------~Dg-~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~s~d 217 (616)
....+|+|+++|+++++-. ..+ .|.+++-..+.........+.. .......++|.++| |+++...
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~-~l~~p~Gi~~~~~G--lyV~~~~ 90 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAE-ELSMVTGLAVAVGG--VYVATPP 90 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeec-CCCCccceeEecCC--EEEeCCC
Confidence 4567889999999877753 223 6777764433322222222221 12246789998888 4445544
Q ss_pred CeEEEEECCCCeeeeEeeCceeEeecccC-CCcccceEEEEEcCCCCCEEEEEeCC-------------------CCEEE
Q 048012 218 AQAKIYDRDGLTLGEFVKGDMYIRDLKNT-KGHICGLTCGEWHPKTKETILTSSED-------------------GSLRI 277 (616)
Q Consensus 218 ~~v~vwd~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~p~~~~~l~s~s~D-------------------g~v~i 277 (616)
...++.+.++.....- +....+..+... ..+......+.|.|++. +.++.+.. +.|.-
T Consensus 91 ~i~~~~d~~gdg~ad~-~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~-LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r 168 (367)
T TIGR02604 91 DILFLRDKDGDDKADG-EREVLLSGFGGQINNHHHSLNSLAWGPDGW-LYFNHGNTLASKVTRPGTSDESRQGLGGGLFR 168 (367)
T ss_pred eEEEEeCCCCCCCCCC-ccEEEEEccCCCCCcccccccCceECCCCC-EEEecccCCCceeccCCCccCcccccCceEEE
Confidence 4334445543211100 000000111111 11345578899999885 44443311 23334
Q ss_pred EECCCccccceEEeeeccCCCCccEEEEEECCCCCeEEEEeCC
Q 048012 278 WDVNEFKSQKQVIKPKLARPGRVAVTTCAWDCDGKCIAGGIGD 320 (616)
Q Consensus 278 wd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~g~~d 320 (616)
+|..... . .+. ..+.+ ....++|+++|+++++-..+
T Consensus 169 ~~pdg~~-~-e~~----a~G~r-np~Gl~~d~~G~l~~tdn~~ 204 (367)
T TIGR02604 169 YNPDGGK-L-RVV----AHGFQ-NPYGHSVDSWGDVFFCDNDD 204 (367)
T ss_pred EecCCCe-E-EEE----ecCcC-CCccceECCCCCEEEEccCC
Confidence 4443221 1 111 11222 35688999999988765433
No 392
>PRK10115 protease 2; Provisional
Probab=96.29 E-value=2.6 Score=47.22 Aligned_cols=115 Identities=3% Similarity=0.002 Sum_probs=65.5
Q ss_pred ceEEEEecCCCCeEEEEeCC-----CeEEEEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCC
Q 048012 198 QVRNLSWSPTSDRFLCVTGS-----AQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSED 272 (616)
Q Consensus 198 ~v~~l~~sp~g~~l~~~s~d-----~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~D 272 (616)
.+..+.|||+|++|+.+... ..|++.|+.++.. +........ ..++|.+++..++++...+
T Consensus 128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~------------l~~~i~~~~--~~~~w~~D~~~~~y~~~~~ 193 (686)
T PRK10115 128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNW------------YPELLDNVE--PSFVWANDSWTFYYVRKHP 193 (686)
T ss_pred EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCC------------CCccccCcc--eEEEEeeCCCEEEEEEecC
Confidence 47788999999988876433 3677888765531 100111111 4589999886566655433
Q ss_pred -----CCEEEEECCCccccceEEeeeccCCCCccEEEEEECCCCCeEEEEeC---CCcEEEEeCC
Q 048012 273 -----GSLRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWDCDGKCIAGGIG---DGSIQVWNLK 329 (616)
Q Consensus 273 -----g~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~g~~---dg~I~iwd~~ 329 (616)
..|+++++.+......++.... ..... ..+..+.++++++..+. ++.+.+|+..
T Consensus 194 ~~~~~~~v~~h~lgt~~~~d~lv~~e~--~~~~~-~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~ 255 (686)
T PRK10115 194 VTLLPYQVWRHTIGTPASQDELVYEEK--DDTFY-VSLHKTTSKHYVVIHLASATTSEVLLLDAE 255 (686)
T ss_pred CCCCCCEEEEEECCCChhHCeEEEeeC--CCCEE-EEEEEcCCCCEEEEEEECCccccEEEEECc
Confidence 3577888877633332222211 11111 23334557887665544 4578899854
No 393
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=96.29 E-value=2.2 Score=46.22 Aligned_cols=31 Identities=19% Similarity=0.232 Sum_probs=25.4
Q ss_pred CCCEEEEeeccccccCCCceEEEEeCCCCceEEEEecC
Q 048012 401 DEQLFLTGTSVERESTTGGLLCFYDREKLELVSRVGIS 438 (616)
Q Consensus 401 dg~~l~~gs~~~~~~~~dg~i~iwd~~~~~~~~~~~~~ 438 (616)
.+.+++.++ .+|.++.+|.++|+.+..+...
T Consensus 471 ~g~lvf~g~-------~~G~l~a~D~~TGe~lw~~~~g 501 (527)
T TIGR03075 471 AGDLVFYGT-------LEGYFKAFDAKTGEELWKFKTG 501 (527)
T ss_pred CCcEEEEEC-------CCCeEEEEECCCCCEeEEEeCC
Confidence 445666666 7999999999999999988764
No 394
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=96.23 E-value=0.34 Score=49.92 Aligned_cols=107 Identities=16% Similarity=0.160 Sum_probs=60.1
Q ss_pred cEEEEEECCCCCeEEEEe-----------CCC-cEEEEeCCCCCCCCCceeeecCCCCCeEEEEEcCCCCeEEEEecCCc
Q 048012 301 AVTTCAWDCDGKCIAGGI-----------GDG-SIQVWNLKPGWGSRPDIHVEKGHSDDITALKFSSDGRILLSRSFDGS 368 (616)
Q Consensus 301 ~v~~~~~sp~g~~l~~g~-----------~dg-~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~ 368 (616)
....|+|.++|+++++-. ..+ .|.+++-..+.........+.........|+|.++| +++ +.....
T Consensus 15 ~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV-~~~~~i 92 (367)
T TIGR02604 15 NPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYV-ATPPDI 92 (367)
T ss_pred CCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEE-eCCCeE
Confidence 467889999999887753 223 777776543321222233333333456889999998 544 444443
Q ss_pred EEEEeCCCCC----CcceEecCCCC-----CCcceeEEECCCCCEEEEee
Q 048012 369 LKVWDLRKMK----EPLKVFEDLPN-----NYAQTNVAFSPDEQLFLTGT 409 (616)
Q Consensus 369 v~lwd~~~~~----~~~~~~~~~~~-----~~~v~~v~fspdg~~l~~gs 409 (616)
+++.|..... ....++..... ......++|.|||.+.++-+
T Consensus 93 ~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G 142 (367)
T TIGR02604 93 LFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHG 142 (367)
T ss_pred EEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecc
Confidence 3344553211 11222222221 23367899999998766554
No 395
>PHA02713 hypothetical protein; Provisional
Probab=96.22 E-value=0.55 Score=51.24 Aligned_cols=148 Identities=6% Similarity=0.045 Sum_probs=73.7
Q ss_pred CEEEEEeCCC-----CEEEEECCCccccceEEeeeccCCCCccEEEEEECCCCCeEEEEeCCC-----------------
Q 048012 264 ETILTSSEDG-----SLRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWDCDGKCIAGGIGDG----------------- 321 (616)
Q Consensus 264 ~~l~s~s~Dg-----~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~g~~dg----------------- 321 (616)
.+.+.|+.++ +|..||..+..-. ....... .+.....+++ +|++.+.|+.++
T Consensus 353 ~IYviGG~~~~~~~~sve~Ydp~~~~W~--~~~~mp~--~r~~~~~~~~--~g~IYviGG~~~~~~~~~~~~~~~~~~~~ 426 (557)
T PHA02713 353 TIYAIGGQNGTNVERTIECYTMGDDKWK--MLPDMPI--ALSSYGMCVL--DQYIYIIGGRTEHIDYTSVHHMNSIDMEE 426 (557)
T ss_pred EEEEECCcCCCCCCceEEEEECCCCeEE--ECCCCCc--ccccccEEEE--CCEEEEEeCCCcccccccccccccccccc
Confidence 5777787654 4788998764321 1111111 1111122222 577888887653
Q ss_pred ------cEEEEeCCCCCCCCCceeeecCCCCCeEEEEEcCCCCeEEEEecCC------cEEEEeCCC-CCCcceEecCCC
Q 048012 322 ------SIQVWNLKPGWGSRPDIHVEKGHSDDITALKFSSDGRILLSRSFDG------SLKVWDLRK-MKEPLKVFEDLP 388 (616)
Q Consensus 322 ------~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg------~v~lwd~~~-~~~~~~~~~~~~ 388 (616)
.|..||..+. ....+..+.........+.+ ++++.+.||.++ .+..||..+ .. .......+
T Consensus 427 ~~~~~~~ve~YDP~td--~W~~v~~m~~~r~~~~~~~~--~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~--W~~~~~m~ 500 (557)
T PHA02713 427 DTHSSNKVIRYDTVNN--IWETLPNFWTGTIRPGVVSH--KDDIYVVCDIKDEKNVKTCIFRYNTNTYNG--WELITTTE 500 (557)
T ss_pred cccccceEEEECCCCC--eEeecCCCCcccccCcEEEE--CCEEEEEeCCCCCCccceeEEEecCCCCCC--eeEccccC
Confidence 4778888765 22222222111111122222 467777777542 467888875 22 22222222
Q ss_pred CCCcceeEEECCCCCEEEEeeccccccCCCc--eEEEEeCCCCce
Q 048012 389 NNYAQTNVAFSPDEQLFLTGTSVERESTTGG--LLCFYDREKLEL 431 (616)
Q Consensus 389 ~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg--~i~iwd~~~~~~ 431 (616)
.......++. -++++.++|+ .+| .+..||..+.+-
T Consensus 501 ~~r~~~~~~~-~~~~iyv~Gg-------~~~~~~~e~yd~~~~~W 537 (557)
T PHA02713 501 SRLSALHTIL-HDNTIMMLHC-------YESYMLQDTFNVYTYEW 537 (557)
T ss_pred cccccceeEE-ECCEEEEEee-------ecceeehhhcCcccccc
Confidence 2111112222 2678888887 555 677777766543
No 396
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.17 E-value=0.098 Score=58.40 Aligned_cols=151 Identities=14% Similarity=0.159 Sum_probs=90.5
Q ss_pred eEEEEEcCCCCC-EEEEEeCCCCEEEEECCCccccceE----Ee-eeccCCCCccEEEEEECCCCC-eEEEEeCCCcEEE
Q 048012 253 LTCGEWHPKTKE-TILTSSEDGSLRIWDVNEFKSQKQV----IK-PKLARPGRVAVTTCAWDCDGK-CIAGGIGDGSIQV 325 (616)
Q Consensus 253 v~~~~~~p~~~~-~l~s~s~Dg~v~iwd~~~~~~~~~~----~~-~~~~~~~~~~v~~~~~sp~g~-~l~~g~~dg~I~i 325 (616)
|..+...++... .++..+.+-.|.+||+++....... +. ............++.|+|.-- ..++...|+.|++
T Consensus 103 i~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~V 182 (1405)
T KOG3630|consen 103 IVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLRV 182 (1405)
T ss_pred ceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchhh
Confidence 344444554432 2333344557899999764322110 00 011111222467888988543 3566677999999
Q ss_pred EeCCCCCCCCCceeeecCCCCCeEEEEEcCCCCeEEEEecCCcEEEEeCCCCCCcceEecCC--CCCCcceeEEECCCCC
Q 048012 326 WNLKPGWGSRPDIHVEKGHSDDITALKFSSDGRILLSRSFDGSLKVWDLRKMKEPLKVFEDL--PNNYAQTNVAFSPDEQ 403 (616)
Q Consensus 326 wd~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~--~~~~~v~~v~fspdg~ 403 (616)
..+... ...+.. ......+++|+|+|.|+.|+.|-..|++.-|-..- . ....+... ...+.|.+|+|-....
T Consensus 183 ~~~~~~---~~~v~s-~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~l-e-ik~~ip~Pp~~e~yrvl~v~Wl~t~e 256 (1405)
T KOG3630|consen 183 KSTKQL---AQNVTS-FPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSL-E-IKSEIPEPPVEENYRVLSVTWLSTQE 256 (1405)
T ss_pred hhhhhh---hhhhcc-cCcccceeeEEeccccceeeEecCCCeEEEeeccc-c-eeecccCCCcCCCcceeEEEEeccee
Confidence 887642 122222 23445689999999999999999999999997642 1 11111111 1256799999998888
Q ss_pred EEEEee
Q 048012 404 LFLTGT 409 (616)
Q Consensus 404 ~l~~gs 409 (616)
+|++-+
T Consensus 257 flvvy~ 262 (1405)
T KOG3630|consen 257 FLVVYG 262 (1405)
T ss_pred EEEEec
Confidence 877655
No 397
>PHA02713 hypothetical protein; Provisional
Probab=96.13 E-value=0.14 Score=55.88 Aligned_cols=64 Identities=8% Similarity=0.104 Sum_probs=40.1
Q ss_pred CCCeEEEEeCCC------cEEEEeCCC-CCCCCCceeeecCCCCCeEEEEEcCCCCeEEEEecCC--cEEEEeCCCC
Q 048012 310 DGKCIAGGIGDG------SIQVWNLKP-GWGSRPDIHVEKGHSDDITALKFSSDGRILLSRSFDG--SLKVWDLRKM 377 (616)
Q Consensus 310 ~g~~l~~g~~dg------~I~iwd~~~-~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg--~v~lwd~~~~ 377 (616)
++++.+.|+.++ .|..||..+ . ....+..+.........+.+ +|++.++||.++ ++..||..+.
T Consensus 463 ~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~--~W~~~~~m~~~r~~~~~~~~--~~~iyv~Gg~~~~~~~e~yd~~~~ 535 (557)
T PHA02713 463 KDDIYVVCDIKDEKNVKTCIFRYNTNTYN--GWELITTTESRLSALHTILH--DNTIMMLHCYESYMLQDTFNVYTY 535 (557)
T ss_pred CCEEEEEeCCCCCCccceeEEEecCCCCC--CeeEccccCcccccceeEEE--CCEEEEEeeecceeehhhcCcccc
Confidence 567777777542 467899886 3 22333344433333444444 688999999888 6777777653
No 398
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=95.99 E-value=0.4 Score=44.23 Aligned_cols=99 Identities=13% Similarity=0.127 Sum_probs=66.8
Q ss_pred eEEEEEcCCCCCEEEEEeCCCCEEEEE--CCCccccce--EEeeec-cCCCCccEEEEEECCCCCeEEEEeCCCcEEEEe
Q 048012 253 LTCGEWHPKTKETILTSSEDGSLRIWD--VNEFKSQKQ--VIKPKL-ARPGRVAVTTCAWDCDGKCIAGGIGDGSIQVWN 327 (616)
Q Consensus 253 v~~~~~~p~~~~~l~s~s~Dg~v~iwd--~~~~~~~~~--~~~~~~-~~~~~~~v~~~~~sp~g~~l~~g~~dg~I~iwd 327 (616)
-+.++|..+.+.+.++-+.+-+|.-|| ..++..... +..... ........-.++..-+|++.++.-..|+|..+|
T Consensus 160 sNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~d 239 (310)
T KOG4499|consen 160 SNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVD 239 (310)
T ss_pred CccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEEC
Confidence 357889888777778888888898888 444432211 111111 001111223445567899999999999999999
Q ss_pred CCCCCCCCCceeeecCCCCCeEEEEEcC
Q 048012 328 LKPGWGSRPDIHVEKGHSDDITALKFSS 355 (616)
Q Consensus 328 ~~~~~~~~~~~~~~~~h~~~V~~l~~sp 355 (616)
..++ +.+..+.-....|+|++|--
T Consensus 240 p~tG----K~L~eiklPt~qitsccFgG 263 (310)
T KOG4499|consen 240 PTTG----KILLEIKLPTPQITSCCFGG 263 (310)
T ss_pred CCCC----cEEEEEEcCCCceEEEEecC
Confidence 9988 57777766788899999963
No 399
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.99 E-value=0.74 Score=49.62 Aligned_cols=202 Identities=15% Similarity=0.196 Sum_probs=104.1
Q ss_pred CCeEEEEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEEEECCCccccceEEeeeccC
Q 048012 217 SAQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLAR 296 (616)
Q Consensus 217 d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~ 296 (616)
...|+||+..|..+... +-.| ..+-.+.|+-+ ..|++...+|++++|++.... ...... ...
T Consensus 63 ~~~I~If~~sG~lL~~~------------~w~~-~~lI~mgWs~~--eeLI~v~k~g~v~Vy~~~ge~-ie~~sv--g~e 124 (829)
T KOG2280|consen 63 RPYIRIFNISGQLLGRI------------LWKH-GELIGMGWSDD--EELICVQKDGTVHVYGLLGEF-IESNSV--GFE 124 (829)
T ss_pred ceeEEEEeccccchHHH------------HhcC-CCeeeecccCC--ceEEEEeccceEEEeecchhh-hccccc--ccc
Confidence 34578888877654321 1222 27888999976 478888999999999985422 211100 000
Q ss_pred CCCccEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCCCCCceeee---cCCCCCeEEEEEcCCCC---eEEEEe-cCCcE
Q 048012 297 PGRVAVTTCAWDCDGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVE---KGHSDDITALKFSSDGR---ILLSRS-FDGSL 369 (616)
Q Consensus 297 ~~~~~v~~~~~sp~g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~---~~h~~~V~~l~~spdg~---~l~s~s-~Dg~v 369 (616)
.....|..+.+..+|-.+.+ .+|.|.+-+-... +....+ ......-+|-+..+++. .|+-.. ..+ .
T Consensus 125 ~~~~~I~ec~~f~~GVavlt--~~g~v~~i~~~~~----~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~-~ 197 (829)
T KOG2280|consen 125 SQMSDIVECRFFHNGVAVLT--VSGQVILINGVEE----PKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVG-L 197 (829)
T ss_pred cccCceeEEEEecCceEEEe--cCCcEEEEcCCCc----chhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhh-h
Confidence 11113555555556644443 3555554432211 111111 11111112222222221 111111 011 1
Q ss_pred EEEeCCCCCCcceEecCCCCCCcceeEEECCCCCEEEEeeccccccCCCceEEEEeCCCCceEEEEecCCCCCeEEEEEc
Q 048012 370 KVWDLRKMKEPLKVFEDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREKLELVSRVGISPACSVVQCAWH 449 (616)
Q Consensus 370 ~lwd~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~ 449 (616)
.++-..........+. .....+..+..||+.++|+--+ ..|.|.+-+....+++..+........-.++|.
T Consensus 198 ~~~q~~~~~~q~~~~~--~~~~~~~ki~VS~n~~~laLyt-------~~G~i~~vs~D~~~~lce~~~~~~~~p~qm~Wc 268 (829)
T KOG2280|consen 198 HICQVEESRVQLHALS--WPNSSVVKISVSPNRRFLALYT-------ETGKIWVVSIDLSQILCEFNCTDHDPPKQMAWC 268 (829)
T ss_pred cccceecccccccccC--CCCceEEEEEEcCCcceEEEEe-------cCCcEEEEecchhhhhhccCCCCCCchHhceee
Confidence 1222222111111111 1224478899999999999988 899999999988888877765555555577776
Q ss_pred CCC
Q 048012 450 PKL 452 (616)
Q Consensus 450 p~~ 452 (616)
-+.
T Consensus 269 gnd 271 (829)
T KOG2280|consen 269 GND 271 (829)
T ss_pred cCC
Confidence 553
No 400
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=95.98 E-value=1.7 Score=42.12 Aligned_cols=172 Identities=15% Similarity=0.123 Sum_probs=88.2
Q ss_pred CEEEEEeCCCCEEEEECCCccc--cceEEeeeccCCCCccEEEEEECC--CCCeEEEE-eCCCcEEEEeCCCCCCCCCce
Q 048012 264 ETILTSSEDGSLRIWDVNEFKS--QKQVIKPKLARPGRVAVTTCAWDC--DGKCIAGG-IGDGSIQVWNLKPGWGSRPDI 338 (616)
Q Consensus 264 ~~l~s~s~Dg~v~iwd~~~~~~--~~~~~~~~~~~~~~~~v~~~~~sp--~g~~l~~g-~~dg~I~iwd~~~~~~~~~~~ 338 (616)
..++.+++||+|.-|.-.-... ...+...... ........+++.. .+.+|+.+ -..++|.+||-.-. .+
T Consensus 101 a~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s-~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~-----~~ 174 (336)
T TIGR03118 101 SRFLFVTEDGTLSGWAPALGTTRMTRAEIVVDAS-QQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFR-----PP 174 (336)
T ss_pred eeEEEEeCCceEEeecCcCCcccccccEEEEccC-CCcceeeeeEEeecCCCceEEEeccCCCceEEecCccc-----cc
Confidence 3578889999999998533222 0111111111 1111223344443 34555444 46789999985432 11
Q ss_pred eeecCCCCC----------e---------EEEEEcCCCCeEEEEecCCcEEEEeCCCCCCcceEecCCCCCCcceeEEEC
Q 048012 339 HVEKGHSDD----------I---------TALKFSSDGRILLSRSFDGSLKVWDLRKMKEPLKVFEDLPNNYAQTNVAFS 399 (616)
Q Consensus 339 ~~~~~h~~~----------V---------~~l~~spdg~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~v~~v~fs 399 (616)
..-.....+ | +-..-.++.+.=+.+..-|.|-+||+.- ..++.+.....-...+.|+..
T Consensus 175 ~~~g~F~DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~G--~l~~r~as~g~LNaPWG~a~A 252 (336)
T TIGR03118 175 PLPGSFIDPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLNG--QLLRRVASSGRLNAPWGLAIA 252 (336)
T ss_pred cCCCCccCCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCCC--cEEEEeccCCcccCCceeeeC
Confidence 110001111 1 1111122222223334457899999863 344444333333346667765
Q ss_pred C------CCCEEEEeeccccccCCCceEEEEeCCCCceEEEEecCCC-----CCeEEEEEcC
Q 048012 400 P------DEQLFLTGTSVERESTTGGLLCFYDREKLELVSRVGISPA-----CSVVQCAWHP 450 (616)
Q Consensus 400 p------dg~~l~~gs~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~-----~~v~~~~~~p 450 (616)
| .+.+|+--- .||+|..||..+++.+-.+.-... ..++.++|..
T Consensus 253 Pa~FG~~sg~lLVGNF-------GDG~InaFD~~sG~~~g~L~~~~G~pi~i~GLWgL~fGn 307 (336)
T TIGR03118 253 PESFGSLSGALLVGNF-------GDGTINAYDPQSGAQLGQLLDPDNHPVKVDGLWSLTFGN 307 (336)
T ss_pred hhhhCCCCCCeEEeec-------CCceeEEecCCCCceeeeecCCCCCeEEecCeEEeeeCC
Confidence 5 344554443 799999999999988877754322 2355666665
No 401
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=95.95 E-value=1.9 Score=42.56 Aligned_cols=159 Identities=16% Similarity=0.109 Sum_probs=77.5
Q ss_pred CcccceEEEEEcCCCCCEEEEEeCCCCEEEEECCCccccceEEeeeccCCCCccEEEEEECCCCCeEEEEeCCCcEEEEe
Q 048012 248 GHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWDCDGKCIAGGIGDGSIQVWN 327 (616)
Q Consensus 248 ~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~g~~dg~I~iwd 327 (616)
.-...+..+.-++++ .++++++.-..+.-||--. ....... +.....|..+.|.+++.+.+++ ..|.|++=+
T Consensus 142 ~~~gs~~~~~r~~dG-~~vavs~~G~~~~s~~~G~--~~w~~~~----r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~ 213 (302)
T PF14870_consen 142 ETSGSINDITRSSDG-RYVAVSSRGNFYSSWDPGQ--TTWQPHN----RNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSD 213 (302)
T ss_dssp S----EEEEEE-TTS--EEEEETTSSEEEEE-TT---SS-EEEE------SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE
T ss_pred CCcceeEeEEECCCC-cEEEEECcccEEEEecCCC--ccceEEc----cCccceehhceecCCCCEEEEe-CCcEEEEcc
Confidence 334668888888887 4666666555556777532 1111111 1122379999999998876655 788888877
Q ss_pred CCCCCCCC-CceeeecCCCCCeEEEEEcCCCCeEEEEecCCcEEEEeCCCCCCcceEecCCCCCCcceeEEECCCCCEEE
Q 048012 328 LKPGWGSR-PDIHVEKGHSDDITALKFSSDGRILLSRSFDGSLKVWDLRKMKEPLKVFEDLPNNYAQTNVAFSPDEQLFL 406 (616)
Q Consensus 328 ~~~~~~~~-~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~ 406 (616)
........ ..+.....-.-.+..|+|.+++...++|+ .|+| +.....++.-.+.-....-....+.|.|..+.+-++
T Consensus 214 ~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg-~G~l-~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~ 291 (302)
T PF14870_consen 214 DPDDGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGG-SGTL-LVSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFV 291 (302)
T ss_dssp -TTEEEEE---B-TTSS--S-EEEEEESSSS-EEEEES-TT-E-EEESSTTSS-EE-GGGTTSSS---EEEEEETTEEEE
T ss_pred CCCCccccccccCCcccCceeeEEEEecCCCCEEEEeC-CccE-EEeCCCCccceECccccCCCCceEEEEEcCCCceEE
Confidence 22110000 01111112223478999999887777665 5544 334444433222222222223478899988888888
Q ss_pred EeeccccccCCCceEEEE
Q 048012 407 TGTSVERESTTGGLLCFY 424 (616)
Q Consensus 407 ~gs~~~~~~~~dg~i~iw 424 (616)
.| .+|.|.-|
T Consensus 292 lG--------~~G~ll~~ 301 (302)
T PF14870_consen 292 LG--------QDGVLLRY 301 (302)
T ss_dssp E---------STTEEEEE
T ss_pred EC--------CCcEEEEe
Confidence 87 47877554
No 402
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=95.92 E-value=2.5 Score=43.73 Aligned_cols=160 Identities=16% Similarity=0.253 Sum_probs=89.9
Q ss_pred CCEEEEEEcCCcEEEEeCCCCccccccceecCCCCCCceEEEEecC----CCCeEEEEeCCCeEEEEECCCCeeeeEeeC
Q 048012 161 GSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSP----TSDRFLCVTGSAQAKIYDRDGLTLGEFVKG 236 (616)
Q Consensus 161 g~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp----~g~~l~~~s~d~~v~vwd~~~~~~~~~~~~ 236 (616)
...|++||..|.+|||+......... -..++..-..+|..+..-. .....+++-.-..+.||.+....-. ...+
T Consensus 37 ~d~IivGS~~G~LrIy~P~~~~~~~~-~lllE~~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~-~~~g 114 (418)
T PF14727_consen 37 SDKIIVGSYSGILRIYDPSGNEFQPE-DLLLETQLKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGT-VEHG 114 (418)
T ss_pred ccEEEEeccccEEEEEccCCCCCCCc-cEEEEEecCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCC-cccC
Confidence 35899999999999999854331111 2223334456787777643 2344555666778888887311100 0000
Q ss_pred ceeE-ee--cccCCCcccceEEEEEcC-CCCCEEEEEeCCCCEEEEECCCccccceEEeeeccCCCCccEEEEEECCCCC
Q 048012 237 DMYI-RD--LKNTKGHICGLTCGEWHP-KTKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWDCDGK 312 (616)
Q Consensus 237 ~~~~-~~--~~~~~~h~~~v~~~~~~p-~~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~ 312 (616)
+.+. .. -..+........+..|-- .+..+|+.-+.||.+.+++-+.......+ +. ..-...++|.+.-.
T Consensus 115 ~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~l--p~-----~llPgPl~Y~~~tD 187 (418)
T PF14727_consen 115 NQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFL--PD-----FLLPGPLCYCPRTD 187 (418)
T ss_pred cEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEc--CC-----CCCCcCeEEeecCC
Confidence 1110 00 111122222233333322 22468999999999999997643211111 11 11234577888888
Q ss_pred eEEEEeCCCcEEEEeCC
Q 048012 313 CIAGGIGDGSIQVWNLK 329 (616)
Q Consensus 313 ~l~~g~~dg~I~iwd~~ 329 (616)
.|++++.+..|..|...
T Consensus 188 sfvt~sss~~l~~Yky~ 204 (418)
T PF14727_consen 188 SFVTASSSWTLECYKYQ 204 (418)
T ss_pred EEEEecCceeEEEecHH
Confidence 99999999999988753
No 403
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=95.86 E-value=1.7 Score=41.27 Aligned_cols=236 Identities=11% Similarity=0.078 Sum_probs=141.1
Q ss_pred cEEEEEECCCCCEEEEEEcCCcEEEEeCCCCccccccceecCCCCCCceEEEEecCCCCeEEEEeCCCeEEEEECCCCee
Q 048012 151 IVSALAVDHSGSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSDRFLCVTGSAQAKIYDRDGLTL 230 (616)
Q Consensus 151 ~V~~v~~sp~g~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~s~d~~v~vwd~~~~~~ 230 (616)
.-..|+-.|||..-+++...+.|---|-.+++ ........+..-..|...|+|..-++=++. .|.-+|.++.++
T Consensus 63 ap~dvapapdG~VWft~qg~gaiGhLdP~tGe-----v~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~ev 136 (353)
T COG4257 63 APFDVAPAPDGAVWFTAQGTGAIGHLDPATGE-----VETYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEV 136 (353)
T ss_pred CccccccCCCCceEEecCccccceecCCCCCc-----eEEEecCCCCCCceEEECCCCCeeEecCcc-eeEEecCcccce
Confidence 34566778888888887777666666655542 222333455556777888888766654444 455556555555
Q ss_pred eeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCC---------CCEEEEECCCccccceEEeeeccCCCCcc
Q 048012 231 GEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSED---------GSLRIWDVNEFKSQKQVIKPKLARPGRVA 301 (616)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~D---------g~v~iwd~~~~~~~~~~~~~~~~~~~~~~ 301 (616)
.+|. .....-...+....|.+.+ ++-+++... +.|++|+.-.+ ..
T Consensus 137 t~f~---------lp~~~a~~nlet~vfD~~G-~lWFt~q~G~yGrLdPa~~~i~vfpaPqG----------------~g 190 (353)
T COG4257 137 TRFP---------LPLEHADANLETAVFDPWG-NLWFTGQIGAYGRLDPARNVISVFPAPQG----------------GG 190 (353)
T ss_pred EEee---------cccccCCCcccceeeCCCc-cEEEeeccccceecCcccCceeeeccCCC----------------CC
Confidence 5442 1133345667888899877 577776531 23444443211 13
Q ss_pred EEEEEECCCCCeEEEEeCCCcEEEEeCCCCCCCCCceeeecCCCCCeEEEEEcCCCCeEEEEecCCcEEEEeCCCCCCcc
Q 048012 302 VTTCAWDCDGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHSDDITALKFSSDGRILLSRSFDGSLKVWDLRKMKEPL 381 (616)
Q Consensus 302 v~~~~~sp~g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~v~lwd~~~~~~~~ 381 (616)
.+.|+..|+|..-++.-.+..|-..|...+ ....+..-.+....-..|--+|.|+.-+|....+.+.-||..... .
T Consensus 191 pyGi~atpdGsvwyaslagnaiaridp~~~--~aev~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~s--W 266 (353)
T COG4257 191 PYGICATPDGSVWYASLAGNAIARIDPFAG--HAEVVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVTS--W 266 (353)
T ss_pred CcceEECCCCcEEEEeccccceEEcccccC--CcceecCCCcccccccccccCccCcEEEeccCCceeeEeCccccc--c
Confidence 567788999998888888888888887765 223333333323334556667889888888888888888876532 2
Q ss_pred eEecCCCCCCcceeEEECCCCCEEEEeeccccccCCCceEEEEeCCCC
Q 048012 382 KVFEDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREKL 429 (616)
Q Consensus 382 ~~~~~~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~~ 429 (616)
..+.-...+....++.....++..++-- ..|.|.-||..+.
T Consensus 267 ~eypLPgs~arpys~rVD~~grVW~sea-------~agai~rfdpeta 307 (353)
T COG4257 267 IEYPLPGSKARPYSMRVDRHGRVWLSEA-------DAGAIGRFDPETA 307 (353)
T ss_pred eeeeCCCCCCCcceeeeccCCcEEeecc-------ccCceeecCcccc
Confidence 2222222222345566665565555433 4566666775554
No 404
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=95.83 E-value=1.6 Score=47.67 Aligned_cols=197 Identities=13% Similarity=0.114 Sum_probs=97.9
Q ss_pred CCeEEEEeCC------CeEEEEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCC------CCE
Q 048012 208 SDRFLCVTGS------AQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSED------GSL 275 (616)
Q Consensus 208 g~~l~~~s~d------~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~D------g~v 275 (616)
+..+++|+.. ..+..||......... ..+... ..-.+++... + .++++|+.| .++
T Consensus 285 ~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~----------a~m~~~-r~~~~~~~~~-~-~lYv~GG~~~~~~~l~~v 351 (571)
T KOG4441|consen 285 GKLVAVGGYNRQGQSLRSVECYDPKTNEWSSL----------APMPSP-RCRVGVAVLN-G-KLYVVGGYDSGSDRLSSV 351 (571)
T ss_pred CeEEEECCCCCCCcccceeEEecCCcCcEeec----------CCCCcc-cccccEEEEC-C-EEEEEccccCCCcccceE
Confidence 4445555555 3677788776643222 112211 1233444443 2 588899988 346
Q ss_pred EEEECCCccccceEEeeeccCCCCccEEEEEECCCCCeEEEEeCCC-----cEEEEeCCCCCCCCCceeeecCCCCCeEE
Q 048012 276 RIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWDCDGKCIAGGIGDG-----SIQVWNLKPGWGSRPDIHVEKGHSDDITA 350 (616)
Q Consensus 276 ~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~g~~dg-----~I~iwd~~~~~~~~~~~~~~~~h~~~V~~ 350 (616)
..||....+-. ...+.........+.. -+|.+.|+|+.|| +|-.||..+. ....+............
T Consensus 352 e~YD~~~~~W~--~~a~M~~~R~~~~v~~----l~g~iYavGG~dg~~~l~svE~YDp~~~--~W~~va~m~~~r~~~gv 423 (571)
T KOG4441|consen 352 ERYDPRTNQWT--PVAPMNTKRSDFGVAV----LDGKLYAVGGFDGEKSLNSVECYDPVTN--KWTPVAPMLTRRSGHGV 423 (571)
T ss_pred EEecCCCCcee--ccCCccCccccceeEE----ECCEEEEEeccccccccccEEEecCCCC--cccccCCCCcceeeeEE
Confidence 77887765421 1111111111112222 2688899999987 4778888775 22333322222222333
Q ss_pred EEEcCCCCeEEEEecCC------cEEEEeCCCCCCcceEecCCCCCCcceeEEECCCCCEEEEeeccccccCCCceEEEE
Q 048012 351 LKFSSDGRILLSRSFDG------SLKVWDLRKMKEPLKVFEDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFY 424 (616)
Q Consensus 351 l~~spdg~~l~s~s~Dg------~v~lwd~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iw 424 (616)
+.+ +|.+.++||.++ ++..||..+.. ............-..++ .-++.+.++|+... ......|..|
T Consensus 424 ~~~--~g~iYi~GG~~~~~~~l~sve~YDP~t~~--W~~~~~M~~~R~~~g~a-~~~~~iYvvGG~~~--~~~~~~VE~y 496 (571)
T KOG4441|consen 424 AVL--GGKLYIIGGGDGSSNCLNSVECYDPETNT--WTLIAPMNTRRSGFGVA-VLNGKIYVVGGFDG--TSALSSVERY 496 (571)
T ss_pred EEE--CCEEEEEcCcCCCccccceEEEEcCCCCc--eeecCCcccccccceEE-EECCEEEEECCccC--CCccceEEEE
Confidence 333 588888888665 46788877643 11111111111111122 23566777776211 1112237778
Q ss_pred eCCCCceE
Q 048012 425 DREKLELV 432 (616)
Q Consensus 425 d~~~~~~~ 432 (616)
|..+.+-.
T Consensus 497 dp~~~~W~ 504 (571)
T KOG4441|consen 497 DPETNQWT 504 (571)
T ss_pred cCCCCcee
Confidence 87665543
No 405
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=95.69 E-value=2.2 Score=41.27 Aligned_cols=158 Identities=20% Similarity=0.217 Sum_probs=90.0
Q ss_pred cEEEEEECCCCCEEEEEE---cCCcEEEEeCCCCccccccceecCCCCCCceEEEEecCCCCeEEEEeCCCeEEEEE-CC
Q 048012 151 IVSALAVDHSGSRVLSGS---YDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSDRFLCVTGSAQAKIYD-RD 226 (616)
Q Consensus 151 ~V~~v~~sp~g~~lasgs---~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~s~d~~v~vwd-~~ 226 (616)
.+.+.+++++|+.+|... ....++++...... .... .+..+..-.|++++...++...+...+++. ..
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~------~~~~--~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~ 96 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPV------RPVL--TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSA 96 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcc------eeec--cCCccccccccCCCCEEEEEcCCCceEEEEecC
Confidence 678889999999877665 23445555543321 1111 334688889999977777667677777774 22
Q ss_pred CCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEe--CCCCEEEEECCCcccc--ceEEeee-ccCCCCcc
Q 048012 227 GLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSS--EDGSLRIWDVNEFKSQ--KQVIKPK-LARPGRVA 301 (616)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s--~Dg~v~iwd~~~~~~~--~~~~~~~-~~~~~~~~ 301 (616)
....... .+.. ..-...|..+.++|++..+.+... .++.|.|--+.....- ..+.... ........
T Consensus 97 ~g~~~~~--------~v~~-~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~ 167 (253)
T PF10647_consen 97 SGTGEPV--------EVDW-PGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSD 167 (253)
T ss_pred CCcceeE--------Eecc-cccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCc
Confidence 2211110 0111 111118999999999976555552 3466776655432211 1111111 11122337
Q ss_pred EEEEEECCCCCeEEEEeCCCc-EEE
Q 048012 302 VTTCAWDCDGKCIAGGIGDGS-IQV 325 (616)
Q Consensus 302 v~~~~~sp~g~~l~~g~~dg~-I~i 325 (616)
++.++|..++.+++.+...+. +..
T Consensus 168 v~~v~W~~~~~L~V~~~~~~~~~~~ 192 (253)
T PF10647_consen 168 VTDVAWSDDSTLVVLGRSAGGPVVR 192 (253)
T ss_pred ceeeeecCCCEEEEEeCCCCCceeE
Confidence 899999999998877765443 443
No 406
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=95.64 E-value=2.4 Score=47.36 Aligned_cols=91 Identities=21% Similarity=0.328 Sum_probs=56.7
Q ss_pred CceEEEEecCCCCeEEEEeCCCeEEEEECCCC--eeeeEeeCceeE-------eecccCCCcccceEEEEEcCCC--CCE
Q 048012 197 HQVRNLSWSPTSDRFLCVTGSAQAKIYDRDGL--TLGEFVKGDMYI-------RDLKNTKGHICGLTCGEWHPKT--KET 265 (616)
Q Consensus 197 ~~v~~l~~sp~g~~l~~~s~d~~v~vwd~~~~--~~~~~~~~~~~~-------~~~~~~~~h~~~v~~~~~~p~~--~~~ 265 (616)
..|..|.++++|.+|+.++..+ |.|..+... ....+..+...+ ........+...|..+.|||.+ ...
T Consensus 85 f~v~~i~~n~~g~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~ 163 (717)
T PF10168_consen 85 FEVHQISLNPTGSLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSH 163 (717)
T ss_pred eeEEEEEECCCCCEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCe
Confidence 3599999999999998877754 444444211 011111111111 1111123456789999999974 457
Q ss_pred EEEEeCCCCEEEEECCCccccce
Q 048012 266 ILTSSEDGSLRIWDVNEFKSQKQ 288 (616)
Q Consensus 266 l~s~s~Dg~v~iwd~~~~~~~~~ 288 (616)
|+.-..|+++|+||+........
T Consensus 164 l~vLtsdn~lR~y~~~~~~~p~~ 186 (717)
T PF10168_consen 164 LVVLTSDNTLRLYDISDPQHPWQ 186 (717)
T ss_pred EEEEecCCEEEEEecCCCCCCeE
Confidence 88888999999999976544333
No 407
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=95.63 E-value=2.3 Score=41.12 Aligned_cols=147 Identities=25% Similarity=0.306 Sum_probs=85.6
Q ss_pred ceEEEEEcCCCCCEEEEEeCC--CCEEEEECCCccccceEEeeeccCCCCccEEEEEECCCCCeEEEEeCCCcEEEEe-C
Q 048012 252 GLTCGEWHPKTKETILTSSED--GSLRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWDCDGKCIAGGIGDGSIQVWN-L 328 (616)
Q Consensus 252 ~v~~~~~~p~~~~~l~s~s~D--g~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~g~~dg~I~iwd-~ 328 (616)
.+...++++++..+.+....+ ..|+++... ........ +. .++.-.|++++.+.++...+...+++. .
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~--~~~~~~~~-----g~--~l~~PS~d~~g~~W~v~~~~~~~~~~~~~ 95 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAG--GPVRPVLT-----GG--SLTRPSWDPDGWVWTVDDGSGGVRVVRDS 95 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCC--Ccceeecc-----CC--ccccccccCCCCEEEEEcCCCceEEEEec
Confidence 678899999986554444233 345555433 22222221 11 567778999988877777677777773 2
Q ss_pred CCCCCCCCceeee-cCCCCCeEEEEEcCCCCeEEEEe---cCCcEEEEeCCCCCC--cceEe---cC-CCCCCcceeEEE
Q 048012 329 KPGWGSRPDIHVE-KGHSDDITALKFSSDGRILLSRS---FDGSLKVWDLRKMKE--PLKVF---ED-LPNNYAQTNVAF 398 (616)
Q Consensus 329 ~~~~~~~~~~~~~-~~h~~~V~~l~~spdg~~l~s~s---~Dg~v~lwd~~~~~~--~~~~~---~~-~~~~~~v~~v~f 398 (616)
..+. ...+..- ..-...|+++.+||||..++... .++.|.+--+..... +.... .. ......++.++|
T Consensus 96 ~~g~--~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W 173 (253)
T PF10647_consen 96 ASGT--GEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAW 173 (253)
T ss_pred CCCc--ceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeee
Confidence 3321 1111111 11112899999999999877665 356677665432111 11111 00 112345889999
Q ss_pred CCCCCEEEEee
Q 048012 399 SPDEQLFLTGT 409 (616)
Q Consensus 399 spdg~~l~~gs 409 (616)
.+++.+++.+.
T Consensus 174 ~~~~~L~V~~~ 184 (253)
T PF10647_consen 174 SDDSTLVVLGR 184 (253)
T ss_pred cCCCEEEEEeC
Confidence 99999888876
No 408
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=95.62 E-value=0.0025 Score=64.17 Aligned_cols=159 Identities=19% Similarity=0.279 Sum_probs=109.3
Q ss_pred ceecCCCCCCceEEEEecCCCCeEEEEeCCCeEEEEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEE
Q 048012 188 FRQLEPSEGHQVRNLSWSPTSDRFLCVTGSAQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETIL 267 (616)
Q Consensus 188 ~~~~~~~~~~~v~~l~~sp~g~~l~~~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~ 267 (616)
++.+...+........|-+.+..+++++.+..+..||-.+....+. ..+.....++|.-++...++
T Consensus 26 yr~ledaalv~pi~~~w~~e~~nlavaca~tiv~~YD~agq~~le~--------------n~tg~aldm~wDkegdvlav 91 (615)
T KOG2247|consen 26 YRRLEDAALVGPIIHRWRPEGHNLAVACANTIVIYYDKAGQVILEL--------------NPTGKALDMAWDKEGDVLAV 91 (615)
T ss_pred HHHhhhhhccccceeeEecCCCceehhhhhhHHHhhhhhcceeccc--------------CCchhHhhhhhccccchhhh
Confidence 3444444444566678888888899999999999999876653221 23445567778777777777
Q ss_pred EEeCCCCEEEEECCCccccceEEeeeccCCCCccEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCCCCCceeeecCCCCC
Q 048012 268 TSSEDGSLRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWDCDGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHSDD 347 (616)
Q Consensus 268 s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~h~~~ 347 (616)
.+-..+.+.+||+.+......-. +++..-.-+.|++.+..++.|...|.+.||+.... ..+...-.|...
T Consensus 92 lAek~~piylwd~n~eytqqLE~------gg~~s~sll~wsKg~~el~ig~~~gn~viynhgts----R~iiv~Gkh~RR 161 (615)
T KOG2247|consen 92 LAEKTGPIYLWDVNSEYTQQLES------GGTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTS----RRIIVMGKHQRR 161 (615)
T ss_pred hhhcCCCeeechhhhhhHHHHhc------cCcchHHHHhhccCCccccccccccceEEEeccch----hhhhhhcccccc
Confidence 78888999999998643322111 11112223679999999999999999999998764 233333448999
Q ss_pred eEEEEEcCCCCeEEEEecCCcEEE
Q 048012 348 ITALKFSSDGRILLSRSFDGSLKV 371 (616)
Q Consensus 348 V~~l~~spdg~~l~s~s~Dg~v~l 371 (616)
+++++|.+.+ +.+.++.|..+.+
T Consensus 162 gtq~av~lEd-~vil~dcd~~L~v 184 (615)
T KOG2247|consen 162 GTQIAVTLED-YVILCDCDNTLSV 184 (615)
T ss_pred eeEEEecccc-eeeecCcHHHHHH
Confidence 9999999876 4455555655443
No 409
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=95.59 E-value=0.035 Score=50.83 Aligned_cols=144 Identities=14% Similarity=0.110 Sum_probs=73.8
Q ss_pred EEEEEcCCcEEEEeCCCCccccccceecCCCCCCceEEEEecCCCCeEEEEeCCCeEEEEECCCCeeeeEeeCceeEeec
Q 048012 164 VLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSDRFLCVTGSAQAKIYDRDGLTLGEFVKGDMYIRDL 243 (616)
Q Consensus 164 lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~ 243 (616)
|..-+.||.|+-+++.......+.-..+. .+ -..+ .-+..+++|+.+|.|.+|........ .
T Consensus 33 l~~~sa~~~v~~~~~~k~k~s~rse~~~~--e~--~~v~---~~~~~~~vG~~dg~v~~~n~n~~g~~-----------~ 94 (238)
T KOG2444|consen 33 LRATSADGLVRERKVRKHKESCRSERFID--EG--QRVV---TASAKLMVGTSDGAVYVFNWNLEGAH-----------S 94 (238)
T ss_pred hccccCCcccccchhhhhhhhhhhhhhhh--cc--eeec---ccCceEEeecccceEEEecCCccchH-----------H
Confidence 33446678887777654322211111111 11 1112 23456889999999999998722100 0
Q ss_pred ccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEEEECCCccccceEEeeeccCCCCccEEEEEECCCCCeEEEE--eCCC
Q 048012 244 KNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWDCDGKCIAGG--IGDG 321 (616)
Q Consensus 244 ~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~g--~~dg 321 (616)
.....-...|.++.-.-+...+.++++.||.||.|++.-.+.......... ..+.....+..+++|+.+ +.|.
T Consensus 95 d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~-----~~~e~~ivv~sd~~i~~a~~S~d~ 169 (238)
T KOG2444|consen 95 DRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNF-----ESGEELIVVGSDEFLKIADTSHDR 169 (238)
T ss_pred HhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccC-----CCcceeEEecCCceEEeeccccch
Confidence 001111223333332323334899999999999999875443332211110 133334444455555555 5666
Q ss_pred cEEEEeCCC
Q 048012 322 SIQVWNLKP 330 (616)
Q Consensus 322 ~I~iwd~~~ 330 (616)
.++.|++..
T Consensus 170 ~~k~W~ve~ 178 (238)
T KOG2444|consen 170 VLKKWNVEK 178 (238)
T ss_pred hhhhcchhh
Confidence 666666653
No 410
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=95.58 E-value=0.048 Score=36.95 Aligned_cols=34 Identities=24% Similarity=0.333 Sum_probs=30.1
Q ss_pred CCceEEEEecCCCCeEEEEeCCCeEEEEECCCCe
Q 048012 196 GHQVRNLSWSPTSDRFLCVTGSAQAKIYDRDGLT 229 (616)
Q Consensus 196 ~~~v~~l~~sp~g~~l~~~s~d~~v~vwd~~~~~ 229 (616)
...|.+++|+|..++|+.++.+|.|.||.++...
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~~qr 44 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRLNWQR 44 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEECCCcC
Confidence 3459999999999999999999999999987554
No 411
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=95.54 E-value=5.6 Score=44.89 Aligned_cols=86 Identities=21% Similarity=0.259 Sum_probs=52.1
Q ss_pred CcEEEEeCCCCCCcceEecCCCCCCcceeEEECCCCCEEEEeeccccccCCCceEEEEeCCCCceEEEEec---------
Q 048012 367 GSLKVWDLRKMKEPLKVFEDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREKLELVSRVGI--------- 437 (616)
Q Consensus 367 g~v~lwd~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~~~~~~~~~~--------- 437 (616)
|.++.|++-..+..+..+....-...+ .++.|...++++|- +..+++||+...+++++...
T Consensus 912 g~~ytyk~~~~g~~lellh~T~~~~~v--~Ai~~f~~~~Lagv--------G~~l~~YdlG~K~lLRk~e~k~~p~~Is~ 981 (1205)
T KOG1898|consen 912 GFVYTYKFVRNGDKLELLHKTEIPGPV--GAICPFQGRVLAGV--------GRFLRLYDLGKKKLLRKCELKFIPNRISS 981 (1205)
T ss_pred CceEEEEEEecCceeeeeeccCCCccc--eEEeccCCEEEEec--------ccEEEEeeCChHHHHhhhhhccCceEEEE
Confidence 446666665544444444332222223 57778777888874 78999999876544322211
Q ss_pred -----------CCCCCeEEEEEcCCCCcEEEEeccC
Q 048012 438 -----------SPACSVVQCAWHPKLNQIFATAGDK 462 (616)
Q Consensus 438 -----------~~~~~v~~~~~~p~~~~l~~~~~d~ 462 (616)
.-...|.-+.|++.+++|+.-+.|.
T Consensus 982 iqt~~~RI~VgD~qeSV~~~~y~~~~n~l~~fadD~ 1017 (1205)
T KOG1898|consen 982 IQTYGARIVVGDIQESVHFVRYRREDNQLIVFADDP 1017 (1205)
T ss_pred EeecceEEEEeeccceEEEEEEecCCCeEEEEeCCC
Confidence 1224566678888888888877753
No 412
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=95.51 E-value=0.52 Score=49.42 Aligned_cols=117 Identities=11% Similarity=0.217 Sum_probs=77.9
Q ss_pred CCeEEEEEcCC----CCeEEEEecCCcEEEEeCCCC-----CCcceEecCCCCCCc--ceeEEECCCCCEEEEeeccccc
Q 048012 346 DDITALKFSSD----GRILLSRSFDGSLKVWDLRKM-----KEPLKVFEDLPNNYA--QTNVAFSPDEQLFLTGTSVERE 414 (616)
Q Consensus 346 ~~V~~l~~spd----g~~l~s~s~Dg~v~lwd~~~~-----~~~~~~~~~~~~~~~--v~~v~fspdg~~l~~gs~~~~~ 414 (616)
..|..+.|.|- -..|++..-...|.+|-+.-. +..+..........+ ...+.|+|....|++-+
T Consensus 57 EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT----- 131 (671)
T PF15390_consen 57 EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLT----- 131 (671)
T ss_pred ceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEe-----
Confidence 45899999994 335555666788999988521 111111111111111 24578999999988877
Q ss_pred cCCCceEEEEeCCCCceEEEEecCCCCCeEEEEEcCCCCcEEEEeccCCCCceEEEec
Q 048012 415 STTGGLLCFYDREKLELVSRVGISPACSVVQCAWHPKLNQIFATAGDKSQGGTHILYD 472 (616)
Q Consensus 415 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~~~~~~~v~~ 472 (616)
....=.++++.......+..+...+.|.+.+|..+|++|+++-+. .-..++||
T Consensus 132 --~~dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLVVAvGS---sLHSyiWd 184 (671)
T PF15390_consen 132 --ARDVSVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLVVAVGS---SLHSYIWD 184 (671)
T ss_pred --cCceeEeeeeeeCCceEEEeccCCceEEEEEecCcCCEEEEEeCC---eEEEEEec
Confidence 333334777776655555666677889999999999999999874 55567887
No 413
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=95.46 E-value=1.4 Score=48.17 Aligned_cols=191 Identities=17% Similarity=0.226 Sum_probs=98.4
Q ss_pred CCCCCEEEEEEcCC------cEEEEeCCCCccccccceecCCCCCC-ceEEEEecCCCCeEEEEeCC------CeEEEEE
Q 048012 158 DHSGSRVLSGSYDY------TVRMYDFQGMNSRLQSFRQLEPSEGH-QVRNLSWSPTSDRFLCVTGS------AQAKIYD 224 (616)
Q Consensus 158 sp~g~~lasgs~Dg------~i~iwd~~~~~~~~~~~~~~~~~~~~-~v~~l~~sp~g~~l~~~s~d------~~v~vwd 224 (616)
+..+.+++.||.++ .+..||.... .+......... .-.+++.. ++...++|+.+ ..+..||
T Consensus 282 ~~~~~l~~vGG~~~~~~~~~~ve~yd~~~~-----~w~~~a~m~~~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD 355 (571)
T KOG4441|consen 282 SVSGKLVAVGGYNRQGQSLRSVECYDPKTN-----EWSSLAPMPSPRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYD 355 (571)
T ss_pred CCCCeEEEECCCCCCCcccceeEEecCCcC-----cEeecCCCCcccccccEEEE-CCEEEEEccccCCCcccceEEEec
Confidence 34466778888774 5777877653 12222111111 12233333 34566777777 3677777
Q ss_pred CCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCC-----EEEEECCCccccceEEeeeccCCCC
Q 048012 225 RDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGS-----LRIWDVNEFKSQKQVIKPKLARPGR 299 (616)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~-----v~iwd~~~~~~~~~~~~~~~~~~~~ 299 (616)
....+... +..+...........+ ++.+.+.|+.||. |-.||..+.+.. ...+... .+
T Consensus 356 ~~~~~W~~----------~a~M~~~R~~~~v~~l---~g~iYavGG~dg~~~l~svE~YDp~~~~W~--~va~m~~--~r 418 (571)
T KOG4441|consen 356 PRTNQWTP----------VAPMNTKRSDFGVAVL---DGKLYAVGGFDGEKSLNSVECYDPVTNKWT--PVAPMLT--RR 418 (571)
T ss_pred CCCCceec----------cCCccCccccceeEEE---CCEEEEEeccccccccccEEEecCCCCccc--ccCCCCc--ce
Confidence 77665322 2222222222222222 3368889998864 666777653321 1111111 11
Q ss_pred ccEEEEEECCCCCeEEEEeCCC------cEEEEeCCCCCCCCCceeeecCCCCCeEEEEEcCCCCeEEEEecCCc-----
Q 048012 300 VAVTTCAWDCDGKCIAGGIGDG------SIQVWNLKPGWGSRPDIHVEKGHSDDITALKFSSDGRILLSRSFDGS----- 368 (616)
Q Consensus 300 ~~v~~~~~sp~g~~l~~g~~dg------~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~----- 368 (616)
.....+. -+|.+.++|+.++ +|..||..++ ....+..+..-........+ ++.+.+.||.|+.
T Consensus 419 ~~~gv~~--~~g~iYi~GG~~~~~~~l~sve~YDP~t~--~W~~~~~M~~~R~~~g~a~~--~~~iYvvGG~~~~~~~~~ 492 (571)
T KOG4441|consen 419 SGHGVAV--LGGKLYIIGGGDGSSNCLNSVECYDPETN--TWTLIAPMNTRRSGFGVAVL--NGKIYVVGGFDGTSALSS 492 (571)
T ss_pred eeeEEEE--ECCEEEEEcCcCCCccccceEEEEcCCCC--ceeecCCcccccccceEEEE--CCEEEEECCccCCCccce
Confidence 1222222 3688888888654 5778888776 22222222222222222222 5778888887763
Q ss_pred EEEEeCCCC
Q 048012 369 LKVWDLRKM 377 (616)
Q Consensus 369 v~lwd~~~~ 377 (616)
|..||..+.
T Consensus 493 VE~ydp~~~ 501 (571)
T KOG4441|consen 493 VERYDPETN 501 (571)
T ss_pred EEEEcCCCC
Confidence 777888764
No 414
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=95.42 E-value=0.016 Score=62.66 Aligned_cols=173 Identities=18% Similarity=0.182 Sum_probs=100.1
Q ss_pred CCCcccceEEEEEcCCCCCEEEEEeCCCCEEEEECCC--ccccceEEeeeccCCCC--ccEEEEEECCCCCeEEEEeCCC
Q 048012 246 TKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNE--FKSQKQVIKPKLARPGR--VAVTTCAWDCDGKCIAGGIGDG 321 (616)
Q Consensus 246 ~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~--~~~~~~~~~~~~~~~~~--~~v~~~~~sp~g~~l~~g~~dg 321 (616)
.++..+.|-.+.|-......+. -.-|.+.|||+.- ++.+..+........+. ..|..|-|-++.-++..+-.++
T Consensus 128 ~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~ 205 (1283)
T KOG1916|consen 128 AKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGG 205 (1283)
T ss_pred HhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCC
Confidence 4677777877777432211222 2336788998753 33333332222111111 1234444445667888888899
Q ss_pred cEEEEeCCCCCCCCCceeeecCCCCCeEEEE-----------EcCCCCeEEEEecCCcEEEEeCCCCC----CcceEecC
Q 048012 322 SIQVWNLKPGWGSRPDIHVEKGHSDDITALK-----------FSSDGRILLSRSFDGSLKVWDLRKMK----EPLKVFED 386 (616)
Q Consensus 322 ~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~-----------~spdg~~l~s~s~Dg~v~lwd~~~~~----~~~~~~~~ 386 (616)
.|++..+... ....+.+|..+++.++ .||||..|+.++.||.+++|-+.-.+ .++..++.
T Consensus 206 ~i~lL~~~ra-----~~~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkp 280 (1283)
T KOG1916|consen 206 EIRLLNINRA-----LRSLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKP 280 (1283)
T ss_pred ceeEeeechH-----HHHHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeeeeeccccHhhhhccCC
Confidence 9999887653 3355566876665544 58999999999999999999775332 23333333
Q ss_pred CCCCCcceeEEECCC---------CCEEEEeeccccccCCCceEEEEeCCCCceE
Q 048012 387 LPNNYAQTNVAFSPD---------EQLFLTGTSVERESTTGGLLCFYDREKLELV 432 (616)
Q Consensus 387 ~~~~~~v~~v~fspd---------g~~l~~gs~~~~~~~~dg~i~iwd~~~~~~~ 432 (616)
+...-.|..+ |..+ -.++++++. .+..+++|....++|+
T Consensus 281 hd~~p~vC~l-c~~~~~~~v~i~~w~~~Itttd------~nre~k~w~~a~w~Cl 328 (1283)
T KOG1916|consen 281 HDKHPRVCWL-CHKQEILVVSIGKWVLRITTTD------VNREEKFWAEAPWQCL 328 (1283)
T ss_pred CCCCCceeee-eccccccCCccceeEEEEeccc------CCcceeEeeccchhhh
Confidence 3322223222 3321 223444442 4567899998888776
No 415
>PRK10115 protease 2; Provisional
Probab=95.42 E-value=5.9 Score=44.44 Aligned_cols=246 Identities=9% Similarity=0.034 Sum_probs=117.1
Q ss_pred ccEEEEEECCCCCEEEEEEc-----CCcEEEEeCCCCccccccceecCCCCCCceEEEEecCCCCeEEEEeCC------C
Q 048012 150 KIVSALAVDHSGSRVLSGSY-----DYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSDRFLCVTGS------A 218 (616)
Q Consensus 150 ~~V~~v~~sp~g~~lasgs~-----Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~s~d------~ 218 (616)
-.+..+.++|+|++|+.+.. ...|++-|+.++......+ ... -..++|+++++.|+....+ .
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i------~~~-~~~~~w~~D~~~~~y~~~~~~~~~~~ 199 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELL------DNV-EPSFVWANDSWTFYYVRKHPVTLLPY 199 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccc------cCc-ceEEEEeeCCCEEEEEEecCCCCCCC
Confidence 45777899999998886532 3458888887642111111 111 1469999999987776543 3
Q ss_pred eEEEEECCCCe--eeeEeeCceeEeecccCCCcccceEEEEEcC-CCCCEEEEEe--CCCCEEEEECCCccccceEEeee
Q 048012 219 QAKIYDRDGLT--LGEFVKGDMYIRDLKNTKGHICGLTCGEWHP-KTKETILTSS--EDGSLRIWDVNEFKSQKQVIKPK 293 (616)
Q Consensus 219 ~v~vwd~~~~~--~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p-~~~~~l~s~s--~Dg~v~iwd~~~~~~~~~~~~~~ 293 (616)
.|+.+++.+.. -... +...........+.+ ++..+++.+. .++.+.+|+..............
T Consensus 200 ~v~~h~lgt~~~~d~lv------------~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 267 (686)
T PRK10115 200 QVWRHTIGTPASQDELV------------YEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPR 267 (686)
T ss_pred EEEEEECCCChhHCeEE------------EeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEEC
Confidence 67777777552 1111 111111122122333 4543443333 23568888853321111111111
Q ss_pred ccCCCCccEEEEEECCCCCeEEEEeCC----CcEEEEeCCCCCCCCCceeeecCC-C-CCeEEEEEcCCCCeEEEEecCC
Q 048012 294 LARPGRVAVTTCAWDCDGKCIAGGIGD----GSIQVWNLKPGWGSRPDIHVEKGH-S-DDITALKFSSDGRILLSRSFDG 367 (616)
Q Consensus 294 ~~~~~~~~v~~~~~sp~g~~l~~g~~d----g~I~iwd~~~~~~~~~~~~~~~~h-~-~~V~~l~~spdg~~l~s~s~Dg 367 (616)
. .. ....+. +.. ..|..-+.. ..|...++... .....+..+ . ..|..+.+. .+.++++...+|
T Consensus 268 ~---~~-~~~~~~-~~~-~~ly~~tn~~~~~~~l~~~~~~~~----~~~~~l~~~~~~~~i~~~~~~-~~~l~~~~~~~g 336 (686)
T PRK10115 268 R---KD-HEYSLD-HYQ-HRFYLRSNRHGKNFGLYRTRVRDE----QQWEELIPPRENIMLEGFTLF-TDWLVVEERQRG 336 (686)
T ss_pred C---CC-CEEEEE-eCC-CEEEEEEcCCCCCceEEEecCCCc----ccCeEEECCCCCCEEEEEEEE-CCEEEEEEEeCC
Confidence 1 11 112222 222 333333322 23444444421 122333344 2 368888887 335666666677
Q ss_pred cEEEEeCCCCCCcceEecCCCCCCcceeEEEC--CCC-CEEEEeeccccccCCCceEEEEeCCCCc
Q 048012 368 SLKVWDLRKMKEPLKVFEDLPNNYAQTNVAFS--PDE-QLFLTGTSVERESTTGGLLCFYDREKLE 430 (616)
Q Consensus 368 ~v~lwd~~~~~~~~~~~~~~~~~~~v~~v~fs--pdg-~~l~~gs~~~~~~~~dg~i~iwd~~~~~ 430 (616)
.-+++-+......+..+. ......+..+.++ +++ .++++.++. ..-+.|+.||+.+++
T Consensus 337 ~~~l~~~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~ss~----~~P~~~y~~d~~~~~ 397 (686)
T PRK10115 337 LTSLRQINRKTREVIGIA-FDDPAYVTWIAYNPEPETSRLRYGYSSM----TTPDTLFELDMDTGE 397 (686)
T ss_pred EEEEEEEcCCCCceEEec-CCCCceEeeecccCCCCCceEEEEEecC----CCCCEEEEEECCCCc
Confidence 655554432122223222 1111113333444 443 355444431 156789999988765
No 416
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=95.42 E-value=0.46 Score=51.39 Aligned_cols=113 Identities=13% Similarity=0.213 Sum_probs=71.7
Q ss_pred EEEEEECCCCCeEEEEeCCCcEEEEeCCCCCCCCCceeeecCCCCCeEEEEEc--CCCCeEEEEecCCcEEEEeCC----
Q 048012 302 VTTCAWDCDGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHSDDITALKFS--SDGRILLSRSFDGSLKVWDLR---- 375 (616)
Q Consensus 302 v~~~~~sp~g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~s--pdg~~l~s~s~Dg~v~lwd~~---- 375 (616)
++-+.-+.-++..++-.....+.|||.+.+. ...-..+ ...+.|..+.|. |+|+.+++.|....|.||--.
T Consensus 32 ~~li~gss~~k~a~V~~~~~~LtIWD~~~~~--lE~~~~f-~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy 108 (631)
T PF12234_consen 32 PSLISGSSIKKIAVVDSSRSELTIWDTRSGV--LEYEESF-SEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDY 108 (631)
T ss_pred cceEeecccCcEEEEECCCCEEEEEEcCCcE--EEEeeee-cCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhh
Confidence 3334444455655555555679999998761 1111112 346789999985 589999999999999998532
Q ss_pred -CCC---CcceEecCCC-CCCcceeEEECCCCCEEEEeeccccccCCCceEEEEeC
Q 048012 376 -KMK---EPLKVFEDLP-NNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDR 426 (616)
Q Consensus 376 -~~~---~~~~~~~~~~-~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~ 426 (616)
+.. .+++.+.-.. ...+|....|.++|.+++.++ +.+.|+|-
T Consensus 109 ~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sG---------Nqlfv~dk 155 (631)
T PF12234_consen 109 TNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSG---------NQLFVFDK 155 (631)
T ss_pred hcCCcccceeEEEEeecCCCCCccceeEecCCeEEEEeC---------CEEEEECC
Confidence 111 1222221111 224588999999998877654 67888884
No 417
>PRK13684 Ycf48-like protein; Provisional
Probab=95.34 E-value=3.7 Score=41.58 Aligned_cols=143 Identities=13% Similarity=0.172 Sum_probs=78.2
Q ss_pred cEEEEEECCCCCeEEEEeCCCcEEEE-eCCCCCCCCCceeeecCCCCCeEEEEEcCCCCeEEEEecCCcEEEEeCCCCCC
Q 048012 301 AVTTCAWDCDGKCIAGGIGDGSIQVW-NLKPGWGSRPDIHVEKGHSDDITALKFSSDGRILLSRSFDGSLKVWDLRKMKE 379 (616)
Q Consensus 301 ~v~~~~~sp~g~~l~~g~~dg~I~iw-d~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~v~lwd~~~~~~ 379 (616)
.+.++.+.+++.+++++. .|.+..- +-. + ..-......-...++++.+.++++.++++ ..|.+++=....+ .
T Consensus 174 ~~~~i~~~~~g~~v~~g~-~G~i~~s~~~g-g---~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G-~ 246 (334)
T PRK13684 174 VVRNLRRSPDGKYVAVSS-RGNFYSTWEPG-Q---TAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDL-E 246 (334)
T ss_pred eEEEEEECCCCeEEEEeC-CceEEEEcCCC-C---CeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCC-C
Confidence 688899999887766654 5655432 211 1 01111222334578999999999877665 4676643222222 2
Q ss_pred cceEecC--CCCCCcceeEEECCCCCEEEEeeccccccCCCceEEEEeCCCCceEEEEec--CCCCCeEEEEEcCCCCcE
Q 048012 380 PLKVFED--LPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREKLELVSRVGI--SPACSVVQCAWHPKLNQI 455 (616)
Q Consensus 380 ~~~~~~~--~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~~~~~~~~~~--~~~~~v~~~~~~p~~~~l 455 (616)
..+.... ......+..+.|.+++..++++. +|.|. .....++.-..+.. .-......+.|..+...+
T Consensus 247 sW~~~~~~~~~~~~~l~~v~~~~~~~~~~~G~--------~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (334)
T PRK13684 247 SWSKPIIPEITNGYGYLDLAYRTPGEIWAGGG--------NGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGF 317 (334)
T ss_pred ccccccCCccccccceeeEEEcCCCCEEEEcC--------CCeEE-EeCCCCCCCeECCcCCCCCcceEEEEEeCCCceE
Confidence 1111111 11223478899999988887774 56553 44444443333321 111346777777665555
Q ss_pred EEEe
Q 048012 456 FATA 459 (616)
Q Consensus 456 ~~~~ 459 (616)
+++.
T Consensus 318 ~~G~ 321 (334)
T PRK13684 318 VLGQ 321 (334)
T ss_pred EECC
Confidence 5444
No 418
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=95.21 E-value=2.7 Score=43.06 Aligned_cols=205 Identities=13% Similarity=0.124 Sum_probs=94.2
Q ss_pred CEEEEEe-CCCCEEEEECCCccccceEEeeec-----cCCCCccEEEEEECCCCCeEEEEeC------CCcEEEEeCCCC
Q 048012 264 ETILTSS-EDGSLRIWDVNEFKSQKQVIKPKL-----ARPGRVAVTTCAWDCDGKCIAGGIG------DGSIQVWNLKPG 331 (616)
Q Consensus 264 ~~l~s~s-~Dg~v~iwd~~~~~~~~~~~~~~~-----~~~~~~~v~~~~~sp~g~~l~~g~~------dg~I~iwd~~~~ 331 (616)
++|+..+ ..+.|.|.|+.+....-.+.+... ...+-.....+.--|+|++++++-. -|-+.++|-.+.
T Consensus 88 r~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~tf 167 (461)
T PF05694_consen 88 RYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGETF 167 (461)
T ss_dssp -EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TTT-
T ss_pred CcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCccc
Confidence 4555555 778899999985432222221111 0111112333444578888877532 245778887643
Q ss_pred CCCCCceeeecCC---CCCeEEEEEcCCCCeEEEEec--------------------CCcEEEEeCCCCCCcceEecCCC
Q 048012 332 WGSRPDIHVEKGH---SDDITALKFSSDGRILLSRSF--------------------DGSLKVWDLRKMKEPLKVFEDLP 388 (616)
Q Consensus 332 ~~~~~~~~~~~~h---~~~V~~l~~spdg~~l~s~s~--------------------Dg~v~lwd~~~~~~~~~~~~~~~ 388 (616)
......... ..--+.+-|.|..+.++|... ..+|.+||+.+ .+.++++.--.
T Consensus 168 ----~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~-r~~~Q~idLg~ 242 (461)
T PF05694_consen 168 ----EVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWST-RKLLQTIDLGE 242 (461)
T ss_dssp -----EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTT-TEEEEEEES-T
T ss_pred ----cccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCC-CcEeeEEecCC
Confidence 333333322 223466778888888888642 34799999986 45566665433
Q ss_pred CCCcceeEEEC--CCCCEEEEeeccccccCCCceEEEEeC-CCCce--EEEEecCC------------------CCCeEE
Q 048012 389 NNYAQTNVAFS--PDEQLFLTGTSVERESTTGGLLCFYDR-EKLEL--VSRVGISP------------------ACSVVQ 445 (616)
Q Consensus 389 ~~~~v~~v~fs--pdg~~l~~gs~~~~~~~~dg~i~iwd~-~~~~~--~~~~~~~~------------------~~~v~~ 445 (616)
....+..|.|. |+..+=++++. ....|..|-. ..++- -..+.+.. ..-|+.
T Consensus 243 ~g~~pLEvRflH~P~~~~gFvg~a------Lss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitD 316 (461)
T PF05694_consen 243 EGQMPLEVRFLHDPDANYGFVGCA------LSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITD 316 (461)
T ss_dssp TEEEEEEEEE-SSTT--EEEEEEE--------EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------
T ss_pred CCCceEEEEecCCCCccceEEEEe------ccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEe
Confidence 33345567665 55666666553 4455555543 44421 11222211 133788
Q ss_pred EEEcCCCCcEEEEeccCCCCceEEEecccCCCCCcEE
Q 048012 446 CAWHPKLNQIFATAGDKSQGGTHILYDPRLSERGALV 482 (616)
Q Consensus 446 ~~~~p~~~~l~~~~~d~~~~~~~~v~~~~~s~~g~~l 482 (616)
+..+.+.++|++++.- .+.++.||++--.+-+++
T Consensus 317 I~iSlDDrfLYvs~W~---~GdvrqYDISDP~~Pkl~ 350 (461)
T PF05694_consen 317 ILISLDDRFLYVSNWL---HGDVRQYDISDPFNPKLV 350 (461)
T ss_dssp EEE-TTS-EEEEEETT---TTEEEEEE-SSTTS-EEE
T ss_pred EEEccCCCEEEEEccc---CCcEEEEecCCCCCCcEE
Confidence 9999999999999984 788999998754444443
No 419
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=95.18 E-value=0.078 Score=35.92 Aligned_cols=33 Identities=18% Similarity=0.298 Sum_probs=29.1
Q ss_pred CcceeEEECCCCCEEEEeeccccccCCCceEEEEeCCCCce
Q 048012 391 YAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREKLEL 431 (616)
Q Consensus 391 ~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~~~~ 431 (616)
..|..++|+|...+||.++ .+|.|.||.+ +++.
T Consensus 12 ~~v~~~~w~P~mdLiA~~t-------~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 12 SRVSCMSWCPTMDLIALGT-------EDGEVLVYRL-NWQR 44 (47)
T ss_pred CcEEEEEECCCCCEEEEEE-------CCCeEEEEEC-CCcC
Confidence 4589999999999999999 8999999998 5554
No 420
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=95.18 E-value=5.8 Score=42.94 Aligned_cols=202 Identities=17% Similarity=0.101 Sum_probs=102.2
Q ss_pred CCEEEEEEcCCcEEEEeCCCCccccccceecCCCCCCce-------EEEEecCCCCeEEEEeCCCeEEEEECCCCee-ee
Q 048012 161 GSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQV-------RNLSWSPTSDRFLCVTGSAQAKIYDRDGLTL-GE 232 (616)
Q Consensus 161 g~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v-------~~l~~sp~g~~l~~~s~d~~v~vwd~~~~~~-~~ 232 (616)
+.+|+.++.++.|+-.|..++....+...... .....+ ..+++ .+..+++++.++.+.-+|..++++ +.
T Consensus 69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~-~~~~~~~~~~~~~rg~av--~~~~v~v~t~dg~l~ALDa~TGk~~W~ 145 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLP-DDVIPVMCCDVVNRGVAL--YDGKVFFGTLDARLVALDAKTGKVVWS 145 (527)
T ss_pred CCEEEEECCCCcEEEEECCCCceeeEecCCCC-cccccccccccccccceE--ECCEEEEEcCCCEEEEEECCCCCEEee
Confidence 44666667777777778776543322111100 000000 01122 235677888899999999875553 33
Q ss_pred EeeCceeEeecccCCCcccceEE-EEEcCCCCCEEEEEe------CCCCEEEEECCCccccceEEeeecc----------
Q 048012 233 FVKGDMYIRDLKNTKGHICGLTC-GEWHPKTKETILTSS------EDGSLRIWDVNEFKSQKQVIKPKLA---------- 295 (616)
Q Consensus 233 ~~~~~~~~~~~~~~~~h~~~v~~-~~~~p~~~~~l~s~s------~Dg~v~iwd~~~~~~~~~~~~~~~~---------- 295 (616)
+...+ .. .++ .+.+ -... + ..++.+. .+|.|+.+|..+++.+..+......
T Consensus 146 ~~~~~-----~~--~~~--~~tssP~v~--~-g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~ 213 (527)
T TIGR03075 146 KKNGD-----YK--AGY--TITAAPLVV--K-GKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKP 213 (527)
T ss_pred ccccc-----cc--ccc--cccCCcEEE--C-CEEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccccccc
Confidence 21110 00 000 1111 0111 2 2444443 2688999999888766554322110
Q ss_pred ----------------CCCCccEEEEEECCCCCeEEEEeCC-----C-----------cEEEEeCCCCCCCCCceeeecC
Q 048012 296 ----------------RPGRVAVTTCAWDCDGKCIAGGIGD-----G-----------SIQVWNLKPGWGSRPDIHVEKG 343 (616)
Q Consensus 296 ----------------~~~~~~v~~~~~sp~g~~l~~g~~d-----g-----------~I~iwd~~~~~~~~~~~~~~~~ 343 (616)
.++-..-..+++.+...+|+.+..+ + +|.-.|++++. ..-......
T Consensus 214 ~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~--~~W~~Q~~~ 291 (527)
T TIGR03075 214 VGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGK--IKWHYQTTP 291 (527)
T ss_pred cccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCC--EEEeeeCCC
Confidence 0011112244777777777776632 2 56667777772 111112222
Q ss_pred CCC-------CeEEEEEcCCCC---eEEEEecCCcEEEEeCCCCCC
Q 048012 344 HSD-------DITALKFSSDGR---ILLSRSFDGSLKVWDLRKMKE 379 (616)
Q Consensus 344 h~~-------~V~~l~~spdg~---~l~s~s~Dg~v~lwd~~~~~~ 379 (616)
|.. ...-+.+..+|+ .|+.+..+|.+.+.|.++++.
T Consensus 292 ~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~ 337 (527)
T TIGR03075 292 HDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKL 337 (527)
T ss_pred CCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCce
Confidence 321 112223334666 788899999999999987653
No 421
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=94.91 E-value=1.3 Score=45.52 Aligned_cols=61 Identities=18% Similarity=0.297 Sum_probs=47.5
Q ss_pred CCCeEEEEeCCCcEEEEeCCCCCCCCCceeeecCCCCCeEEEEEcCCCCeEEEEecCCcEEEEeCC
Q 048012 310 DGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHSDDITALKFSSDGRILLSRSFDGSLKVWDLR 375 (616)
Q Consensus 310 ~g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~v~lwd~~ 375 (616)
...+||+|+..|-|++||.-.- .....+.+....|..|..+.+|.+|++.+ ..++.|-|++
T Consensus 572 esGyIa~as~kGDirLyDRig~----rAKtalP~lG~aIk~idvta~Gk~ilaTC-k~yllL~d~~ 632 (776)
T COG5167 572 ESGYIAAASRKGDIRLYDRIGK----RAKTALPGLGDAIKHIDVTANGKHILATC-KNYLLLTDVP 632 (776)
T ss_pred cCceEEEecCCCceeeehhhcc----hhhhcCcccccceeeeEeecCCcEEEEee-cceEEEEecc
Confidence 4458999999999999996532 33345667778899999999999888766 5678888875
No 422
>PHA03098 kelch-like protein; Provisional
Probab=94.84 E-value=0.99 Score=49.22 Aligned_cols=103 Identities=13% Similarity=0.060 Sum_probs=50.3
Q ss_pred CEEEEEeCC------CCEEEEECCCccccceEEeeeccCCCCccEEEEEECCCCCeEEEEeCCC--------cEEEEeCC
Q 048012 264 ETILTSSED------GSLRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWDCDGKCIAGGIGDG--------SIQVWNLK 329 (616)
Q Consensus 264 ~~l~s~s~D------g~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~g~~dg--------~I~iwd~~ 329 (616)
.+++.|+.+ ..+..||..+.+-.. ..... ..+....++. .++.+++.|+.++ .+.+||..
T Consensus 391 ~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~--~~~~p--~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~v~~yd~~ 464 (534)
T PHA03098 391 LIYVIGGISKNDELLKTVECFSLNTNKWSK--GSPLP--ISHYGGCAIY--HDGKIYVIGGISYIDNIKVYNIVESYNPV 464 (534)
T ss_pred EEEEECCcCCCCcccceEEEEeCCCCeeee--cCCCC--ccccCceEEE--ECCEEEEECCccCCCCCcccceEEEecCC
Confidence 567777632 357888887643221 11110 1111112222 3566777776432 38889987
Q ss_pred CCCCCCCceeeecCCCCCeEEEEEcCCCCeEEEEecC-----CcEEEEeCCC
Q 048012 330 PGWGSRPDIHVEKGHSDDITALKFSSDGRILLSRSFD-----GSLKVWDLRK 376 (616)
Q Consensus 330 ~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~D-----g~v~lwd~~~ 376 (616)
++. ...+..+.........+.+ ++++++.||.+ ..|.+||..+
T Consensus 465 ~~~--W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~ 512 (534)
T PHA03098 465 TNK--WTELSSLNFPRINASLCIF--NNKIYVVGGDKYEYYINEIEVYDDKT 512 (534)
T ss_pred CCc--eeeCCCCCcccccceEEEE--CCEEEEEcCCcCCcccceeEEEeCCC
Confidence 652 2222211111111222233 67777777754 3577777764
No 423
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.67 E-value=2.1 Score=43.54 Aligned_cols=119 Identities=14% Similarity=0.215 Sum_probs=76.6
Q ss_pred cccEEEEEECCCCCEEEEEEcCCcEEEEeCCCCccccccceecCCCCCCceEEEEecCCCCeEEEEeCCCeEEEEECCCC
Q 048012 149 TKIVSALAVDHSGSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSDRFLCVTGSAQAKIYDRDGL 228 (616)
Q Consensus 149 ~~~V~~v~~sp~g~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~s~d~~v~vwd~~~~ 228 (616)
.++|.++.||+|.+.||.--.|++|.++++.+.+....... ........|....|+.. .-++..+..| +-+|.....
T Consensus 66 ~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~-~ck~k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v~pe 142 (657)
T KOG2377|consen 66 KGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQ-ECKTKNANILGFCWTSS-TEIAFITDQG-IEFYQVLPE 142 (657)
T ss_pred CCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHH-HhccCcceeEEEEEecC-eeEEEEecCC-eEEEEEchh
Confidence 45899999999999999999999999999965432222111 11122334899999877 4444444333 445544322
Q ss_pred eeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEe-CCCCEEEEECC
Q 048012 229 TLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSS-EDGSLRIWDVN 281 (616)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s-~Dg~v~iwd~~ 281 (616)
. +.++..+.|...|+...|+++..-.|++.+ ..+++.=+.++
T Consensus 143 k-----------rslRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~lnpf~~~ 185 (657)
T KOG2377|consen 143 K-----------RSLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVLNPFHFR 185 (657)
T ss_pred h-----------hhhhhhhhcccCccEEEEccccceEeeeccccccccccEEEe
Confidence 2 446667889999999999998754444444 33444434443
No 424
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=94.65 E-value=6.4 Score=40.78 Aligned_cols=41 Identities=15% Similarity=0.079 Sum_probs=34.7
Q ss_pred cceeEEECCCCCEEEEeeccccccCCCceEEEEeCCCCceEEEEecCC
Q 048012 392 AQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREKLELVSRVGISP 439 (616)
Q Consensus 392 ~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~ 439 (616)
.+.+++.+|++++.++.. .-|.|.|+|+.++..++..+.-.
T Consensus 309 ~~~~i~~sP~~~laA~tD-------slGRV~LiD~~~~~vvrmWKGYR 349 (415)
T PF14655_consen 309 EGESICLSPSGRLAAVTD-------SLGRVLLIDVARGIVVRMWKGYR 349 (415)
T ss_pred eEEEEEECCCCCEEEEEc-------CCCcEEEEECCCChhhhhhccCc
Confidence 367899999999888876 78999999999999988886533
No 425
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=94.27 E-value=1.7 Score=47.66 Aligned_cols=109 Identities=12% Similarity=0.110 Sum_probs=69.1
Q ss_pred CCCeEEEEeCCCcEEEEeCCCC----------C---CC---CCceeeecCCCCCeEEEEEc--CCCCeEEEEecCCcEEE
Q 048012 310 DGKCIAGGIGDGSIQVWNLKPG----------W---GS---RPDIHVEKGHSDDITALKFS--SDGRILLSRSFDGSLKV 371 (616)
Q Consensus 310 ~g~~l~~g~~dg~I~iwd~~~~----------~---~~---~~~~~~~~~h~~~V~~l~~s--pdg~~l~s~s~Dg~v~l 371 (616)
+...|+++..||.|.+|.+..- . .. ..+...+. -...+++|+++ ...++||+++....|.|
T Consensus 113 ~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~rlIAVSsNs~~VTV 191 (717)
T PF08728_consen 113 GEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSRLIAVSSNSQEVTV 191 (717)
T ss_pred CeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcceEEEEecCCceEEE
Confidence 4457899999999999965210 0 00 01111222 23468999998 78889999988888888
Q ss_pred EeCCCCCCcceEecCCCCCCcceeEEECCCC-----C-EEEEeeccccccCCCceEEEEeC
Q 048012 372 WDLRKMKEPLKVFEDLPNNYAQTNVAFSPDE-----Q-LFLTGTSVERESTTGGLLCFYDR 426 (616)
Q Consensus 372 wd~~~~~~~~~~~~~~~~~~~v~~v~fspdg-----~-~l~~gs~~~~~~~~dg~i~iwd~ 426 (616)
|-+............+.+...|-+|+|-++. . +|++++ -.|.+.+|++
T Consensus 192 Faf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~d-------I~G~v~~~~I 245 (717)
T PF08728_consen 192 FAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATD-------ISGEVWTFKI 245 (717)
T ss_pred EEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEe-------ccCcEEEEEE
Confidence 8665422111111123344558999997653 2 566666 7898888887
No 426
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=94.13 E-value=5.1 Score=40.75 Aligned_cols=201 Identities=16% Similarity=0.201 Sum_probs=107.3
Q ss_pred CCCCEEEEEEcCCcEEEEeCCCCccccccceecCCCCCCceEEEEe----cCCCCe--EEEEeC-C---CeEEEEECCC-
Q 048012 159 HSGSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSW----SPTSDR--FLCVTG-S---AQAKIYDRDG- 227 (616)
Q Consensus 159 p~g~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~----sp~g~~--l~~~s~-d---~~v~vwd~~~- 227 (616)
|...+|+.....+-+.+||+++.. + ..+. ...++.+.. .-.|+. |++++. + ..|++|.++.
T Consensus 66 p~kSlIigTdK~~GL~VYdL~Gk~--l---q~~~---~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~ 137 (381)
T PF02333_consen 66 PAKSLIIGTDKKGGLYVYDLDGKE--L---QSLP---VGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPD 137 (381)
T ss_dssp GGG-EEEEEETTTEEEEEETTS-E--E---EEE----SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETT
T ss_pred cccceEEEEeCCCCEEEEcCCCcE--E---Eeec---CCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCC
Confidence 455688888888889999998742 1 1111 122222222 113333 445543 2 5799998763
Q ss_pred -CeeeeEeeCceeEeecccCCCcccceEEEEEc--C-CCCCEEEEEeCCCCEEEEECCCc---cccceEEeeeccCCCCc
Q 048012 228 -LTLGEFVKGDMYIRDLKNTKGHICGLTCGEWH--P-KTKETILTSSEDGSLRIWDVNEF---KSQKQVIKPKLARPGRV 300 (616)
Q Consensus 228 -~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~--p-~~~~~l~s~s~Dg~v~iwd~~~~---~~~~~~~~~~~~~~~~~ 300 (616)
..+......... +..-...+..+|+. + ++..+++....+|.+..|-+... .....+.+.... ..
T Consensus 138 ~g~L~~v~~~~~p------~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~---~s 208 (381)
T PF02333_consen 138 TGELTDVTDPAAP------IATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKV---GS 208 (381)
T ss_dssp TTEEEE-CBTTC-------EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE----SS
T ss_pred CCcceEcCCCCcc------cccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecC---CC
Confidence 333222111100 11112345666653 3 34456777888998888877532 212222222211 11
Q ss_pred cEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCCC-CCceeeecC--CCCCeEEEEEcC--CC--CeEEEEecCCcEEEEe
Q 048012 301 AVTTCAWDCDGKCIAGGIGDGSIQVWNLKPGWGS-RPDIHVEKG--HSDDITALKFSS--DG--RILLSRSFDGSLKVWD 373 (616)
Q Consensus 301 ~v~~~~~sp~g~~l~~g~~dg~I~iwd~~~~~~~-~~~~~~~~~--h~~~V~~l~~sp--dg--~~l~s~s~Dg~v~lwd 373 (616)
.+-.|+.......|+.|-++--|+-|+....... ...+....+ ....|-.|++-. ++ -+|+|.-.+++..||+
T Consensus 209 Q~EGCVVDDe~g~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~ 288 (381)
T PF02333_consen 209 QPEGCVVDDETGRLYVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYD 288 (381)
T ss_dssp -EEEEEEETTTTEEEEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEE
T ss_pred cceEEEEecccCCEEEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEe
Confidence 6788889888889999999988888888643211 122222222 345688888753 33 3455555788999999
Q ss_pred CCC
Q 048012 374 LRK 376 (616)
Q Consensus 374 ~~~ 376 (616)
.+.
T Consensus 289 r~~ 291 (381)
T PF02333_consen 289 REG 291 (381)
T ss_dssp SST
T ss_pred cCC
Confidence 874
No 427
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.
Probab=94.00 E-value=6.5 Score=44.64 Aligned_cols=197 Identities=17% Similarity=0.289 Sum_probs=106.0
Q ss_pred EcCCC-CCEEEEEeCCCCEEEEECCCccccceEEeee--ccCCCCccEE--EEEECCCCCeEEEEeCC---CcEEEEeCC
Q 048012 258 WHPKT-KETILTSSEDGSLRIWDVNEFKSQKQVIKPK--LARPGRVAVT--TCAWDCDGKCIAGGIGD---GSIQVWNLK 329 (616)
Q Consensus 258 ~~p~~-~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~--~~~~~~~~v~--~~~~sp~g~~l~~g~~d---g~I~iwd~~ 329 (616)
+||-. +.-+++....|.|++|=.+............ .....+..|+ ++++..+|+.+++++.+ +.|++|.+.
T Consensus 56 ~HP~~~K~A~i~Vt~nG~l~l~yQ~~~~~~~~~s~~el~s~~~s~~~ithAsi~~~~~g~~ili~t~s~~s~~l~~yrv~ 135 (753)
T PF11635_consen 56 FHPGPAKSACIAVTRNGLLKLWYQKPDGQWNESSTAELESLGSSDDLITHASIAPSDNGKSILIATYSSLSKQLRFYRVQ 135 (753)
T ss_pred cCCCCCceEEEEEecCCeEEEEEEcCCCccceeehhhhccccccccceeeceeeecCCCCEEEEEEccccCCceEEEEEE
Confidence 45533 3456677788999999773322222221000 0011222344 45556778777666665 789988654
Q ss_pred CCCCC------C---CceeeecC--------------------CCCCeEEEEEcC-------CCCeEEEEec----CCcE
Q 048012 330 PGWGS------R---PDIHVEKG--------------------HSDDITALKFSS-------DGRILLSRSF----DGSL 369 (616)
Q Consensus 330 ~~~~~------~---~~~~~~~~--------------------h~~~V~~l~~sp-------dg~~l~s~s~----Dg~v 369 (616)
-.|.. . +.+..... .-..++.|.|-+ ....|++.+. -..|
T Consensus 136 I~W~~~~~~~d~q~~PSl~l~~~~~~~~~~~~~~~~~~~~~~~~~~~LthL~ils~~~~~~~~p~Ili~~~~~~~~~SiI 215 (753)
T PF11635_consen 136 IDWNAKPQQIDPQKLPSLFLSHIADETPKDVDPTGWGDPSPDNSMYQLTHLEILSPTPDKDSAPEILIVYSSPNTPSSII 215 (753)
T ss_pred EeccCcCccCCCCcCCeEEEEeccccccccccCccccccCcccccccceeEEEeccCCCCCCCCeEEEEEEcCCCCCcEE
Confidence 43320 0 11111111 112466777754 1224444442 3369
Q ss_pred EEEeCCCCCCcceEe-----------------------cCCCCCCcceeEEECCCCCEEEEeeccccccCCCceEEEEeC
Q 048012 370 KVWDLRKMKEPLKVF-----------------------EDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDR 426 (616)
Q Consensus 370 ~lwd~~~~~~~~~~~-----------------------~~~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~ 426 (616)
.-|.++.....++.. ........|.++....-+.+|+..- .||.|.++|.
T Consensus 216 ~RweL~~~~~~lh~~F~ql~s~~~~~~~~~~~~~l~~~~~i~~~~~V~si~~~~~~~~v~~~~-------~DGsI~~~dr 288 (753)
T PF11635_consen 216 ERWELREEQQPLHPAFQQLGSKKNSSSEPPPTYRLRRLDDITLNKRVVSITSPELDIVVAFAF-------SDGSIEFRDR 288 (753)
T ss_pred EEEEEEccCcccchhhhhcCCCCcCCCCCCCceeEEEecccccCCeEEEEEecccCcEEEEEE-------cCCeEEEEec
Confidence 999987643322211 1111223466777777777888887 8999999999
Q ss_pred CCCceEEEE----e--------------cCCCCCeEEEEEcCCCCcEEEEecc
Q 048012 427 EKLELVSRV----G--------------ISPACSVVQCAWHPKLNQIFATAGD 461 (616)
Q Consensus 427 ~~~~~~~~~----~--------------~~~~~~v~~~~~~p~~~~l~~~~~d 461 (616)
.+.+.+... . ++....+..++|+|.+..++.-..+
T Consensus 289 ~t~~~~~~~~~~~~~~~~v~s~~~~Gf~fp~~~~~~~vafSPt~c~~v~~~~~ 341 (753)
T PF11635_consen 289 NTMKELNETRTNGEPPNTVTSLFQAGFHFPCIQPPLHVAFSPTMCSLVQIDED 341 (753)
T ss_pred CcchhhcccccccCCccccccccccccccccCCCCceEEECcccceEEEEecC
Confidence 888665444 1 1111123346788887777666664
No 428
>PHA03098 kelch-like protein; Provisional
Probab=93.89 E-value=3 Score=45.47 Aligned_cols=151 Identities=11% Similarity=0.076 Sum_probs=70.6
Q ss_pred CEEEEEeCC-----CCEEEEECCCccccceEEeeeccCCCCccEEEEEECCCCCeEEEEeCC------CcEEEEeCCCCC
Q 048012 264 ETILTSSED-----GSLRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWDCDGKCIAGGIGD------GSIQVWNLKPGW 332 (616)
Q Consensus 264 ~~l~s~s~D-----g~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~g~~d------g~I~iwd~~~~~ 332 (616)
.+++.|+.+ ..+..||..+.... ...... ..+.....+. -++++++.|+.+ ..+..||..+..
T Consensus 344 ~lyv~GG~~~~~~~~~v~~yd~~~~~W~--~~~~lp--~~r~~~~~~~--~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~ 417 (534)
T PHA03098 344 RIYVIGGIYNSISLNTVESWKPGESKWR--EEPPLI--FPRYNPCVVN--VNNLIYVIGGISKNDELLKTVECFSLNTNK 417 (534)
T ss_pred EEEEEeCCCCCEecceEEEEcCCCCcee--eCCCcC--cCCccceEEE--ECCEEEEECCcCCCCcccceEEEEeCCCCe
Confidence 577777765 34677887654321 111111 1111111222 256777777632 458899987651
Q ss_pred CCCCceeeecCCCCCeEEEEEcCCCCeEEEEecCC--------cEEEEeCCCCCCcceEecCCCC-CCcceeEEECCCCC
Q 048012 333 GSRPDIHVEKGHSDDITALKFSSDGRILLSRSFDG--------SLKVWDLRKMKEPLKVFEDLPN-NYAQTNVAFSPDEQ 403 (616)
Q Consensus 333 ~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg--------~v~lwd~~~~~~~~~~~~~~~~-~~~v~~v~fspdg~ 403 (616)
...+..+.........+. .++.+++.||.++ .+.+||..+.. ...+...+. ......+.+ +++
T Consensus 418 --W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~--W~~~~~~~~~r~~~~~~~~--~~~ 489 (534)
T PHA03098 418 --WSKGSPLPISHYGGCAIY--HDGKIYVIGGISYIDNIKVYNIVESYNPVTNK--WTELSSLNFPRINASLCIF--NNK 489 (534)
T ss_pred --eeecCCCCccccCceEEE--ECCEEEEECCccCCCCCcccceEEEecCCCCc--eeeCCCCCcccccceEEEE--CCE
Confidence 122211111111112222 3566777776432 38888887543 112211111 111122222 677
Q ss_pred EEEEeeccccccCCCceEEEEeCCCCc
Q 048012 404 LFLTGTSVERESTTGGLLCFYDREKLE 430 (616)
Q Consensus 404 ~l~~gs~~~~~~~~dg~i~iwd~~~~~ 430 (616)
+++.|+.... .....|.+||..+.+
T Consensus 490 iyv~GG~~~~--~~~~~v~~yd~~~~~ 514 (534)
T PHA03098 490 IYVVGGDKYE--YYINEIEVYDDKTNT 514 (534)
T ss_pred EEEEcCCcCC--cccceeEEEeCCCCE
Confidence 7777762110 013568888877654
No 429
>PHA02790 Kelch-like protein; Provisional
Probab=93.52 E-value=3.5 Score=44.15 Aligned_cols=100 Identities=11% Similarity=0.053 Sum_probs=50.0
Q ss_pred CEEEEEeCCC---CEEEEECCCccccceEEeeeccCCCCccEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCCCCCceee
Q 048012 264 ETILTSSEDG---SLRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWDCDGKCIAGGIGDGSIQVWNLKPGWGSRPDIHV 340 (616)
Q Consensus 264 ~~l~s~s~Dg---~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~ 340 (616)
.+.+.|+.++ ++..||..+..-. ...+.. ..+.....++ -+|++.+.| |.+.+||..++ ....+..
T Consensus 364 ~IYviGG~~~~~~~ve~ydp~~~~W~--~~~~m~--~~r~~~~~~~--~~~~IYv~G---G~~e~ydp~~~--~W~~~~~ 432 (480)
T PHA02790 364 VIYVIGGHSETDTTTEYLLPNHDQWQ--FGPSTY--YPHYKSCALV--FGRRLFLVG---RNAEFYCESSN--TWTLIDD 432 (480)
T ss_pred EEEEecCcCCCCccEEEEeCCCCEEE--eCCCCC--CccccceEEE--ECCEEEEEC---CceEEecCCCC--cEeEcCC
Confidence 5777777553 4677887654321 111111 0111112222 356666666 45788998765 2333333
Q ss_pred ecCCCCCeEEEEEcCCCCeEEEEecC-----CcEEEEeCCC
Q 048012 341 EKGHSDDITALKFSSDGRILLSRSFD-----GSLKVWDLRK 376 (616)
Q Consensus 341 ~~~h~~~V~~l~~spdg~~l~s~s~D-----g~v~lwd~~~ 376 (616)
+.........+.+ +|++.+.||.+ .+|..||..+
T Consensus 433 m~~~r~~~~~~v~--~~~IYviGG~~~~~~~~~ve~Yd~~~ 471 (480)
T PHA02790 433 PIYPRDNPELIIV--DNKLLLIGGFYRGSYIDTIEVYNNRT 471 (480)
T ss_pred CCCCccccEEEEE--CCEEEEECCcCCCcccceEEEEECCC
Confidence 3222222333333 57788888754 2466666654
No 430
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=93.50 E-value=7.4 Score=39.27 Aligned_cols=154 Identities=15% Similarity=0.168 Sum_probs=86.5
Q ss_pred cEEEEEECCCCCeEEEEeCCCc------EEEEeCCCCCCCCCcee-----eecCCC--------CCeEEEEEcCCCCeEE
Q 048012 301 AVTTCAWDCDGKCIAGGIGDGS------IQVWNLKPGWGSRPDIH-----VEKGHS--------DDITALKFSSDGRILL 361 (616)
Q Consensus 301 ~v~~~~~sp~g~~l~~g~~dg~------I~iwd~~~~~~~~~~~~-----~~~~h~--------~~V~~l~~spdg~~l~ 361 (616)
.+..+.+.+++..+++.+.+|. +..+++.........+. .+..-. -..-+|++.++|.+++
T Consensus 21 GlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~~i 100 (326)
T PF13449_consen 21 GLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSFWI 100 (326)
T ss_pred cEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCEEE
Confidence 5778888876666777777777 66666554100001111 111111 1345888878888888
Q ss_pred EEecC------CcEEEEeCCCCCCcceEe-------------cCCCCCCcceeEEECCCCCEEEEeeccccc-cC-CC--
Q 048012 362 SRSFD------GSLKVWDLRKMKEPLKVF-------------EDLPNNYAQTNVAFSPDEQLFLTGTSVERE-ST-TG-- 418 (616)
Q Consensus 362 s~s~D------g~v~lwd~~~~~~~~~~~-------------~~~~~~~~v~~v~fspdg~~l~~gs~~~~~-~~-~d-- 418 (616)
+.-.+ ..|+.++.. +.. ...+ .....+...-.++++|+|+.|+++...... .. ..
T Consensus 101 s~E~~~~~~~~p~I~~~~~~-G~~-~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~~~ 178 (326)
T PF13449_consen 101 SSEGGRTGGIPPRIRRFDLD-GRV-IRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRANP 178 (326)
T ss_pred EeCCccCCCCCCEEEEECCC-Ccc-cceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCccccc
Confidence 77777 778888865 322 2222 223345568899999999977776632211 00 01
Q ss_pred -----ceEEEEeCCC-CceEEE--EecC------CCCCeEEEEEcCCCCcEE
Q 048012 419 -----GLLCFYDREK-LELVSR--VGIS------PACSVVQCAWHPKLNQIF 456 (616)
Q Consensus 419 -----g~i~iwd~~~-~~~~~~--~~~~------~~~~v~~~~~~p~~~~l~ 456 (616)
-.|..||..+ ++.... +... ....|..+++.+++..|+
T Consensus 179 ~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLv 230 (326)
T PF13449_consen 179 DNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLV 230 (326)
T ss_pred ccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEE
Confidence 2344556554 322222 2222 245677888888876444
No 431
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=93.41 E-value=1.4 Score=48.21 Aligned_cols=111 Identities=15% Similarity=0.179 Sum_probs=70.2
Q ss_pred CCEEEEEeCCCCEEEEECCCcc----cc---------ceEEeeeccCCCCccEEEEEEC--CCCCeEEEEeCCCcEEEEe
Q 048012 263 KETILTSSEDGSLRIWDVNEFK----SQ---------KQVIKPKLARPGRVAVTTCAWD--CDGKCIAGGIGDGSIQVWN 327 (616)
Q Consensus 263 ~~~l~s~s~Dg~v~iwd~~~~~----~~---------~~~~~~~~~~~~~~~v~~~~~s--p~g~~l~~g~~dg~I~iwd 327 (616)
..+|+.|..||.|.+|.+.+-- .. .....+.....-...++.++++ ...++||+++....|.||-
T Consensus 114 ~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFa 193 (717)
T PF08728_consen 114 EEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAVSSNSQEVTVFA 193 (717)
T ss_pred eeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEEecCCceEEEEE
Confidence 4689999999999999763210 00 0001111111122267888988 7888999999888888876
Q ss_pred CCCCCCCCCceeeecCCCCCeEEEEEcCCC---C---eEEEEecCCcEEEEeC
Q 048012 328 LKPGWGSRPDIHVEKGHSDDITALKFSSDG---R---ILLSRSFDGSLKVWDL 374 (616)
Q Consensus 328 ~~~~~~~~~~~~~~~~h~~~V~~l~~spdg---~---~l~s~s~Dg~v~lwd~ 374 (616)
..... .+........|...|-+|+|-++. . +|++++-.|.+.+|++
T Consensus 194 f~l~~-~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 194 FALVD-ERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred Eeccc-cccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 54321 111111122355668899997743 2 7888999999999888
No 432
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=93.39 E-value=1.8 Score=48.27 Aligned_cols=84 Identities=20% Similarity=0.359 Sum_probs=57.5
Q ss_pred cEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCCC-------CCcee--e--------ecCCCCCeEEEEEcCC---CCeE
Q 048012 301 AVTTCAWDCDGKCIAGGIGDGSIQVWNLKPGWGS-------RPDIH--V--------EKGHSDDITALKFSSD---GRIL 360 (616)
Q Consensus 301 ~v~~~~~sp~g~~l~~g~~dg~I~iwd~~~~~~~-------~~~~~--~--------~~~h~~~V~~l~~spd---g~~l 360 (616)
.|..+.++++|.+|+..+..|.+ |..+...+.. ...+. . ...+...|..+.|+|. +..|
T Consensus 86 ~v~~i~~n~~g~~lal~G~~~v~-V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l 164 (717)
T PF10168_consen 86 EVHQISLNPTGSLLALVGPRGVV-VLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHL 164 (717)
T ss_pred eEEEEEECCCCCEEEEEcCCcEE-EEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeE
Confidence 68899999999999998876644 3333221100 01111 1 1133457899999995 5789
Q ss_pred EEEecCCcEEEEeCCCCCCcceEec
Q 048012 361 LSRSFDGSLKVWDLRKMKEPLKVFE 385 (616)
Q Consensus 361 ~s~s~Dg~v~lwd~~~~~~~~~~~~ 385 (616)
+.-..|+++|+||+.....+.+++.
T Consensus 165 ~vLtsdn~lR~y~~~~~~~p~~v~~ 189 (717)
T PF10168_consen 165 VVLTSDNTLRLYDISDPQHPWQVLS 189 (717)
T ss_pred EEEecCCEEEEEecCCCCCCeEEEE
Confidence 9999999999999987777666654
No 433
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=93.32 E-value=0.46 Score=48.01 Aligned_cols=172 Identities=17% Similarity=0.139 Sum_probs=97.4
Q ss_pred CCCcccceEEEEEcCCCCCEEEEEeCCCCEEEEECCCccccceEEeeeccCCCCccEE-EEEECCCCCeEEEEeCCCcEE
Q 048012 246 TKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPGRVAVT-TCAWDCDGKCIAGGIGDGSIQ 324 (616)
Q Consensus 246 ~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~-~~~~sp~g~~l~~g~~dg~I~ 324 (616)
+......|..+-..|+++ .+..-+. .++.++++.+................+..|+ .+..-..|..+.++..||-|.
T Consensus 216 L~~~~~~v~qllL~Pdg~-~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~vs 293 (733)
T COG4590 216 LSVPFSDVSQLLLTPDGK-TLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGLVS 293 (733)
T ss_pred cCCCccchHhhEECCCCC-EEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCcee
Confidence 344456677788899885 5554443 6788888865432222111111111111222 122233566788899999987
Q ss_pred EE-eCCCCCC-CCCceeeecCCCCCeEEEEEcCCCCeEEEEecCCcEEEEeCCCCCCcceEecCCCCCCcceeEEECCCC
Q 048012 325 VW-NLKPGWG-SRPDIHVEKGHSDDITALKFSSDGRILLSRSFDGSLKVWDLRKMKEPLKVFEDLPNNYAQTNVAFSPDE 402 (616)
Q Consensus 325 iw-d~~~~~~-~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~v~~v~fspdg 402 (616)
-| |++.+.. ....+..++-....|..+.-..+.+-+++-...|++.++.....+ ...+...-. .+.-+++||.+
T Consensus 294 QWFdvr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~--~lL~~~~~~--~~~~~~~Sp~~ 369 (733)
T COG4590 294 QWFDVRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEK--LLLFERAYQ--APQLVAMSPNQ 369 (733)
T ss_pred eeeeeecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCc--ceehhhhhc--CcceeeeCccc
Confidence 76 6654421 111122222222445444444455678888888998888654322 222222212 36678999999
Q ss_pred CEEEEeeccccccCCCceEEEEeCCCCce
Q 048012 403 QLFLTGTSVERESTTGGLLCFYDREKLEL 431 (616)
Q Consensus 403 ~~l~~gs~~~~~~~~dg~i~iwd~~~~~~ 431 (616)
.+|++- ..|.|+++.+++...
T Consensus 370 ~~Ll~e--------~~gki~~~~l~Nr~P 390 (733)
T COG4590 370 AYLLSE--------DQGKIRLAQLENRNP 390 (733)
T ss_pred chheee--------cCCceEEEEecCCCC
Confidence 999987 478899998877543
No 434
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.26 E-value=15 Score=40.15 Aligned_cols=56 Identities=16% Similarity=0.436 Sum_probs=38.4
Q ss_pred CCcEEEEeCCCCccccccceecCCCCCCceEEEEecCCCCeEEEEeCCCeEEEEECCCCeeee
Q 048012 170 DYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSDRFLCVTGSAQAKIYDRDGLTLGE 232 (616)
Q Consensus 170 Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~s~d~~v~vwd~~~~~~~~ 232 (616)
-..|+||++.+.. +..+.-.++ .+..+.|+.+ ..|++...+|+++||++-+.....
T Consensus 63 ~~~I~If~~sG~l-----L~~~~w~~~-~lI~mgWs~~-eeLI~v~k~g~v~Vy~~~ge~ie~ 118 (829)
T KOG2280|consen 63 RPYIRIFNISGQL-----LGRILWKHG-ELIGMGWSDD-EELICVQKDGTVHVYGLLGEFIES 118 (829)
T ss_pred ceeEEEEeccccc-----hHHHHhcCC-CeeeecccCC-ceEEEEeccceEEEeecchhhhcc
Confidence 4568899887631 111211222 6889999976 457779999999999998776543
No 435
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=93.23 E-value=4.6 Score=44.02 Aligned_cols=102 Identities=13% Similarity=0.212 Sum_probs=61.5
Q ss_pred EEEEEcCCCCeEEEEecCCc-----EEEEeCCCCCCcceEecCCCCCCcceeEEECCCCCEEEEeeccccccCCCceEEE
Q 048012 349 TALKFSSDGRILLSRSFDGS-----LKVWDLRKMKEPLKVFEDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCF 423 (616)
Q Consensus 349 ~~l~~spdg~~l~s~s~Dg~-----v~lwd~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~i 423 (616)
..+.|-|+|..+++-+.||. |+++..+.... -..-........+..++|+-....++.+ ..+.|.+
T Consensus 250 ~~LSWkpqgS~~ati~td~~~~S~~ViFfErNGLrH-Gef~lr~~~dEk~~~~~wn~~s~vlav~--------~~n~~~l 320 (1243)
T COG5290 250 HQLSWKPQGSKYATIGTDGCSTSESVIFFERNGLRH-GEFDLRVGCDEKAFLENWNLLSTVLAVA--------EGNLLKL 320 (1243)
T ss_pred hccccccCCceeeeeccCCCCCcceEEEEccCCccc-CCccccCCchhhhhhhhhhHHHHHHHHh--------hcceEEE
Confidence 45899999999999886663 56665332110 0000011122335667887777777666 4788999
Q ss_pred EeCCCCceEEEEecCCCCCeEEEEEcCCC-CcEEEEec
Q 048012 424 YDREKLELVSRVGISPACSVVQCAWHPKL-NQIFATAG 460 (616)
Q Consensus 424 wd~~~~~~~~~~~~~~~~~v~~~~~~p~~-~~l~~~~~ 460 (616)
|-..+...-.+... .-..+.-+.|||.. +.|+...+
T Consensus 321 wttkNyhWYLK~e~-~ip~~s~vkwhpe~~nTl~f~d~ 357 (1243)
T COG5290 321 WTTKNYHWYLKVER-QIPGISYVKWHPEEKNTLLFRDG 357 (1243)
T ss_pred EEccceEEEEEEee-cCCCcceeeeccccCcEEEEecC
Confidence 99887654433322 12346778999974 45555544
No 436
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=93.17 E-value=2.8 Score=45.56 Aligned_cols=115 Identities=18% Similarity=0.285 Sum_probs=72.3
Q ss_pred CeEEEEEcCCCCeEEEEecCCcEEEEeCCCCCCcceEecCCCCCCcceeEEEC--CCCCEEEEeeccccccCCCceEEEE
Q 048012 347 DITALKFSSDGRILLSRSFDGSLKVWDLRKMKEPLKVFEDLPNNYAQTNVAFS--PDEQLFLTGTSVERESTTGGLLCFY 424 (616)
Q Consensus 347 ~V~~l~~spdg~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~v~~v~fs--pdg~~l~~gs~~~~~~~~dg~i~iw 424 (616)
.++-+.-|.-++..++-+...++.|||.+... +..-........|..+.|. |+++.+++.+ ..+.|.+|
T Consensus 31 ~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~--lE~~~~f~~~~~I~dLDWtst~d~qsiLaVG-------f~~~v~l~ 101 (631)
T PF12234_consen 31 NPSLISGSSIKKIAVVDSSRSELTIWDTRSGV--LEYEESFSEDDPIRDLDWTSTPDGQSILAVG-------FPHHVLLY 101 (631)
T ss_pred CcceEeecccCcEEEEECCCCEEEEEEcCCcE--EEEeeeecCCCceeeceeeecCCCCEEEEEE-------cCcEEEEE
Confidence 34444445545555554455679999998654 2222233445668888885 6888888877 78888888
Q ss_pred eCC---------CCceEEEEecC--CCCCeEEEEEcCCCCcEEEEeccCCCCceEEEecccCC
Q 048012 425 DRE---------KLELVSRVGIS--PACSVVQCAWHPKLNQIFATAGDKSQGGTHILYDPRLS 476 (616)
Q Consensus 425 d~~---------~~~~~~~~~~~--~~~~v~~~~~~p~~~~l~~~~~d~~~~~~~~v~~~~~s 476 (616)
--. ....++.+.+. ...+|.+..|.++|..+ +++ |+...|++-...
T Consensus 102 ~Q~R~dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~Lv-V~s-----GNqlfv~dk~~~ 158 (631)
T PF12234_consen 102 TQLRYDYTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLV-VGS-----GNQLFVFDKWLD 158 (631)
T ss_pred EccchhhhcCCcccceeEEEEeecCCCCCccceeEecCCeEE-EEe-----CCEEEEECCCcC
Confidence 632 23455555432 22568899999996544 444 446888876543
No 437
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=93.14 E-value=19 Score=41.06 Aligned_cols=179 Identities=11% Similarity=0.209 Sum_probs=98.9
Q ss_pred CCCCceEEEEec---CC---CCeEEEEeCCCeEEEEECCCCee-eeE--eeCcee---EeecccCCCcccceEEEEEcCC
Q 048012 194 SEGHQVRNLSWS---PT---SDRFLCVTGSAQAKIYDRDGLTL-GEF--VKGDMY---IRDLKNTKGHICGLTCGEWHPK 261 (616)
Q Consensus 194 ~~~~~v~~l~~s---p~---g~~l~~~s~d~~v~vwd~~~~~~-~~~--~~~~~~---~~~~~~~~~h~~~v~~~~~~p~ 261 (616)
..+.+|..|+|. .. ...++.+-....+.|+...-... ... ...... +..+.....-......++|+|.
T Consensus 77 ~~~~PI~qI~fa~~~~~~~~~~~~l~Vrt~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP~ 156 (765)
T PF10214_consen 77 DDGSPIKQIKFATLSESFDEKSRWLAVRTETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNPW 156 (765)
T ss_pred CCCCCeeEEEecccccccCCcCcEEEEEcCCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEeccC
Confidence 356679999998 21 11244455556677776221111 000 000000 1111111122335678999998
Q ss_pred CCCEEEEEeCCCCEEEEECCCccccc--eEEeeeccC-------CCCccEEEEEECCCCCeEEEEeCCCcEEEEeCCCCC
Q 048012 262 TKETILTSSEDGSLRIWDVNEFKSQK--QVIKPKLAR-------PGRVAVTTCAWDCDGKCIAGGIGDGSIQVWNLKPGW 332 (616)
Q Consensus 262 ~~~~l~s~s~Dg~v~iwd~~~~~~~~--~~~~~~~~~-------~~~~~v~~~~~sp~g~~l~~g~~dg~I~iwd~~~~~ 332 (616)
....||.....|...||++....... .+....... ........+.|..+-+.|++++ ...+.++|+.+..
T Consensus 157 ~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~-r~~l~~~d~~~~~ 235 (765)
T PF10214_consen 157 DQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCN-RSKLMLIDFESNW 235 (765)
T ss_pred ccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEc-CCceEEEECCCCC
Confidence 88899999999999999992211111 111000000 1112345788988877777775 4678999999763
Q ss_pred CCCCceeeecCCCCCeEEEEEcCC--CCeEEEEecCCcEEEEeCCCC
Q 048012 333 GSRPDIHVEKGHSDDITALKFSSD--GRILLSRSFDGSLKVWDLRKM 377 (616)
Q Consensus 333 ~~~~~~~~~~~h~~~V~~l~~spd--g~~l~s~s~Dg~v~lwd~~~~ 377 (616)
. ..+.........|..+.-++. ...|+-. ...|.+.++...
T Consensus 236 ~--~~~l~~~~~~~~IlDv~~~~~~~~~~FiLT--s~eiiw~~~~~~ 278 (765)
T PF10214_consen 236 Q--TEYLVTAKTWSWILDVKRSPDNPSHVFILT--SKEIIWLDVKSS 278 (765)
T ss_pred c--cchhccCCChhheeeEEecCCccceEEEEe--cCeEEEEEccCC
Confidence 1 111222334567889988886 3333333 356878888763
No 438
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=92.99 E-value=0.35 Score=31.76 Aligned_cols=31 Identities=16% Similarity=0.339 Sum_probs=26.4
Q ss_pred cEEEEEECCCC---CeEEEEeCCCcEEEEeCCCC
Q 048012 301 AVTTCAWDCDG---KCIAGGIGDGSIQVWNLKPG 331 (616)
Q Consensus 301 ~v~~~~~sp~g---~~l~~g~~dg~I~iwd~~~~ 331 (616)
.|.+|.|+|.. .+|+.+-.-|.|.|+|++++
T Consensus 2 AvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 2 AVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN 35 (43)
T ss_pred CeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence 68899999854 48888888999999999964
No 439
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.98 E-value=9.3 Score=36.98 Aligned_cols=169 Identities=9% Similarity=0.101 Sum_probs=101.7
Q ss_pred CCCcccceEEEEEcCCCCCEEEEEeCCCCEEEEECCCccccceEEeeeccCCCCccEEEEEECCCCCeEEEEeCCCcEEE
Q 048012 246 TKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWDCDGKCIAGGIGDGSIQV 325 (616)
Q Consensus 246 ~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~g~~dg~I~i 325 (616)
..+-...|.++.|+|+.. .|++......-.||=..+++.+..+...... ..-.+.|.-+|++.++--.++.+.+
T Consensus 81 i~g~~~nvS~LTynp~~r-tLFav~n~p~~iVElt~~GdlirtiPL~g~~-----DpE~Ieyig~n~fvi~dER~~~l~~ 154 (316)
T COG3204 81 ILGETANVSSLTYNPDTR-TLFAVTNKPAAIVELTKEGDLIRTIPLTGFS-----DPETIEYIGGNQFVIVDERDRALYL 154 (316)
T ss_pred cccccccccceeeCCCcc-eEEEecCCCceEEEEecCCceEEEecccccC-----ChhHeEEecCCEEEEEehhcceEEE
Confidence 456666799999999885 6666666666666655566555554433221 3456778888888888888899988
Q ss_pred EeCCCCCCCCC--c-eeee--cCC-CCCeEEEEEcCCCCeEEEEecCCcEEEEeCCCCCCcceEec--CCCC-----CCc
Q 048012 326 WNLKPGWGSRP--D-IHVE--KGH-SDDITALKFSSDGRILLSRSFDGSLKVWDLRKMKEPLKVFE--DLPN-----NYA 392 (616)
Q Consensus 326 wd~~~~~~~~~--~-~~~~--~~h-~~~V~~l~~spdg~~l~s~s~Dg~v~lwd~~~~~~~~~~~~--~~~~-----~~~ 392 (616)
+.+........ . ...+ ..+ ....-.++|.|....|+.+-.-.=+.||.+......+.... .... -..
T Consensus 155 ~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~D 234 (316)
T COG3204 155 FTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLD 234 (316)
T ss_pred EEEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeec
Confidence 87765411000 0 0011 112 45578899999998888888777777777653322111111 1100 123
Q ss_pred ceeEEECCCC-CEEEEeeccccccCCCceEEEEeCC
Q 048012 393 QTNVAFSPDE-QLFLTGTSVERESTTGGLLCFYDRE 427 (616)
Q Consensus 393 v~~v~fspdg-~~l~~gs~~~~~~~~dg~i~iwd~~ 427 (616)
++++.|.+.. .+|+-+. .++.|.-.|+.
T Consensus 235 vSgl~~~~~~~~LLVLS~-------ESr~l~Evd~~ 263 (316)
T COG3204 235 VSGLEFNAITNSLLVLSD-------ESRRLLEVDLS 263 (316)
T ss_pred cccceecCCCCcEEEEec-------CCceEEEEecC
Confidence 6778888754 4444444 56666666643
No 440
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=92.88 E-value=6.5 Score=39.67 Aligned_cols=162 Identities=17% Similarity=0.219 Sum_probs=86.7
Q ss_pred CceEEEEecCCCCeEEEEeCCCe------EEEEECCC--CeeeeEeeCceeEeecccCCC-----cccceEEEEEcCCCC
Q 048012 197 HQVRNLSWSPTSDRFLCVTGSAQ------AKIYDRDG--LTLGEFVKGDMYIRDLKNTKG-----HICGLTCGEWHPKTK 263 (616)
Q Consensus 197 ~~v~~l~~sp~g~~l~~~s~d~~------v~vwd~~~--~~~~~~~~~~~~~~~~~~~~~-----h~~~v~~~~~~p~~~ 263 (616)
+.+..|.+.+++..+++.+.++. +..+++.. ........... ..+....+ -.....++++.+++
T Consensus 20 GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~L~~~~G~~~~~~~~D~Egi~~~~~g- 96 (326)
T PF13449_consen 20 GGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDM--IPLRDPDGQPFPKNGLDPEGIAVPPDG- 96 (326)
T ss_pred CcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccc--eeccCCCCCcCCcCCCChhHeEEecCC-
Confidence 34788999977777888888877 55555443 11111100000 01111111 11144577775544
Q ss_pred CEEEEEeCC------CCEEEEECCCccccceEEeee---------ccCCCCccEEEEEECCCCCeEEEEeCC-----C--
Q 048012 264 ETILTSSED------GSLRIWDVNEFKSQKQVIKPK---------LARPGRVAVTTCAWDCDGKCIAGGIGD-----G-- 321 (616)
Q Consensus 264 ~~l~s~s~D------g~v~iwd~~~~~~~~~~~~~~---------~~~~~~~~v~~~~~sp~g~~l~~g~~d-----g-- 321 (616)
.++++.-.+ ..|+.++.. +.....+..+. ........+-+++++|+|+.|+++.+. +
T Consensus 97 ~~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~ 175 (326)
T PF13449_consen 97 SFWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPR 175 (326)
T ss_pred CEEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCcc
Confidence 577776666 778888876 44444442222 112233468899999999977766542 2
Q ss_pred c-------EEEE--eCCC-CCCCCCceeeecC-----CCCCeEEEEEcCCCCeEEE
Q 048012 322 S-------IQVW--NLKP-GWGSRPDIHVEKG-----HSDDITALKFSSDGRILLS 362 (616)
Q Consensus 322 ~-------I~iw--d~~~-~~~~~~~~~~~~~-----h~~~V~~l~~spdg~~l~s 362 (616)
. ++|+ |..+ +.........+.. ....|+.+.+-+++++|+.
T Consensus 176 ~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvL 231 (326)
T PF13449_consen 176 ANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVL 231 (326)
T ss_pred cccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEE
Confidence 1 4554 4433 1101111222221 3456888888888886654
No 441
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=92.64 E-value=6.1 Score=36.50 Aligned_cols=105 Identities=10% Similarity=0.211 Sum_probs=60.4
Q ss_pred EEEEEeCCCCEEEEECCCccccceEEeeeccCCCCccEEEEEECCCCCeEEEEeCCC------cEEEE-eCCCCCCCCCc
Q 048012 265 TILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWDCDGKCIAGGIGDG------SIQVW-NLKPGWGSRPD 337 (616)
Q Consensus 265 ~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~g~~dg------~I~iw-d~~~~~~~~~~ 337 (616)
.|+.+...+.|.+|++....+......... +.|..+.++..|++|++--.+. .+|+| +.+........
T Consensus 30 ~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv-----~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~ 104 (215)
T PF14761_consen 30 ALFVAASGCKVEVYDLEQEECPLLCTFSTV-----GRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSP 104 (215)
T ss_pred eEEEEcCCCEEEEEEcccCCCceeEEEcch-----hheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCc
Confidence 444446667899999984333322222222 2789999999999999864432 56665 22221001111
Q ss_pred ee-eecCC---------------------CCCeEEEEEcC-CCCeEEEEecCCcEEEEeCCC
Q 048012 338 IH-VEKGH---------------------SDDITALKFSS-DGRILLSRSFDGSLKVWDLRK 376 (616)
Q Consensus 338 ~~-~~~~h---------------------~~~V~~l~~sp-dg~~l~s~s~Dg~v~lwd~~~ 376 (616)
+. .+-+| ...+.+|+..| .|++|+. + ++++.||.+..
T Consensus 105 v~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg-~-~~~l~lf~l~~ 164 (215)
T PF14761_consen 105 VRVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVG-C-GNKLVLFTLKY 164 (215)
T ss_pred EEEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEE-c-CCEEEEEEEEE
Confidence 11 22222 24567888888 5665553 3 67899998764
No 442
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=92.63 E-value=22 Score=40.32 Aligned_cols=169 Identities=8% Similarity=-0.009 Sum_probs=91.5
Q ss_pred CEEEEEeCCCCEEEEECCCccccceEEeeeccCC--CCccEEEEEEC----------------CCCCeEEEEeCCCcEEE
Q 048012 264 ETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARP--GRVAVTTCAWD----------------CDGKCIAGGIGDGSIQV 325 (616)
Q Consensus 264 ~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~--~~~~v~~~~~s----------------p~g~~l~~g~~dg~I~i 325 (616)
..|+.++.++.|.-.|..+++...++........ .......+++. ..+..|+.++.|+.|.-
T Consensus 195 g~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~LiA 274 (764)
T TIGR03074 195 DTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLIA 274 (764)
T ss_pred CEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEEE
Confidence 3677777788888888888776655433221110 00011222221 13457888889999999
Q ss_pred EeCCCCCCCCCceeeecCCCCCe-------------EEEEEcC--CCCeEEEEec----------CCcEEEEeCCCCCCc
Q 048012 326 WNLKPGWGSRPDIHVEKGHSDDI-------------TALKFSS--DGRILLSRSF----------DGSLKVWDLRKMKEP 380 (616)
Q Consensus 326 wd~~~~~~~~~~~~~~~~h~~~V-------------~~l~~sp--dg~~l~s~s~----------Dg~v~lwd~~~~~~~ 380 (616)
.|.+++. .+..+. ..+.| ..+.-.| .+..+++++. +|.|+-+|+++++..
T Consensus 275 LDA~TGk----~~W~fg-~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~ 349 (764)
T TIGR03074 275 LDADTGK----LCEDFG-NNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALV 349 (764)
T ss_pred EECCCCC----EEEEec-CCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEe
Confidence 9999872 332221 11111 1112222 2345565642 588999999987654
Q ss_pred ceEecCCC--------------CCCcc-eeEEECCCCCEEEEeeccc-----------cccCCCceEEEEeCCCCceEEE
Q 048012 381 LKVFEDLP--------------NNYAQ-TNVAFSPDEQLFLTGTSVE-----------RESTTGGLLCFYDREKLELVSR 434 (616)
Q Consensus 381 ~~~~~~~~--------------~~~~v-~~v~fspdg~~l~~gs~~~-----------~~~~~dg~i~iwd~~~~~~~~~ 434 (616)
-+.....+ ....+ ..+++++...+++.+.... ......+.|.-.|..||+..-.
T Consensus 350 W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~W~ 429 (764)
T TIGR03074 350 WAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKERWV 429 (764)
T ss_pred eEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCCCCceEEE
Confidence 33321110 00011 3457777777776654210 0112456777888888888777
Q ss_pred Eec
Q 048012 435 VGI 437 (616)
Q Consensus 435 ~~~ 437 (616)
++.
T Consensus 430 ~Q~ 432 (764)
T TIGR03074 430 FQT 432 (764)
T ss_pred ecc
Confidence 765
No 443
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.20 E-value=2.6 Score=42.95 Aligned_cols=144 Identities=16% Similarity=0.177 Sum_probs=81.0
Q ss_pred EEECCCCCeEEEEeCCCcEEEEeCCCCCCCCCceeeecCCCCCeEEEEEcCCCCeEEEEecCCcEEEEeCCCCCCcceEe
Q 048012 305 CAWDCDGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHSDDITALKFSSDGRILLSRSFDGSLKVWDLRKMKEPLKVF 384 (616)
Q Consensus 305 ~~~sp~g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~v~lwd~~~~~~~~~~~ 384 (616)
+-|...++.|+ +...|.+.-|-+.... ...++.......++|.+|.||+|.+.||+--.+.+|.+++.......+...
T Consensus 28 vFfDDaNkqlf-avrSggatgvvvkgpn-dDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~ 105 (657)
T KOG2377|consen 28 VFFDDANKQLF-AVRSGGATGVVVKGPN-DDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYT 105 (657)
T ss_pred eeeccCcceEE-EEecCCeeEEEEeCCC-CCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHH
Confidence 33443333333 3334555666554321 222333333455799999999999999999999999999984322111111
Q ss_pred cCC-CCCCcceeEEECCCCCEEEEeeccccccCCCceEEEEeCCCCce-EEEEecCCCCCeEEEEEcCCCCcEEEEec
Q 048012 385 EDL-PNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREKLEL-VSRVGISPACSVVQCAWHPKLNQIFATAG 460 (616)
Q Consensus 385 ~~~-~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~~v~~~~~~p~~~~l~~~~~ 460 (616)
..+ .....|...+|+.... ++..+ ..| +-+|-+...+. ++.++ ++...|.=..|.++.+.++.+++
T Consensus 106 ~~ck~k~~~IlGF~W~~s~e-~A~i~-------~~G-~e~y~v~pekrslRlVk-s~~~nvnWy~yc~et~v~LL~t~ 173 (657)
T KOG2377|consen 106 QECKTKNANILGFCWTSSTE-IAFIT-------DQG-IEFYQVLPEKRSLRLVK-SHNLNVNWYMYCPETAVILLSTT 173 (657)
T ss_pred HHhccCcceeEEEEEecCee-EEEEe-------cCC-eEEEEEchhhhhhhhhh-hcccCccEEEEccccceEeeecc
Confidence 111 2223478889987744 44443 223 55665433222 22222 34456777888888777666655
No 444
>PRK13684 Ycf48-like protein; Provisional
Probab=91.88 E-value=16 Score=37.04 Aligned_cols=156 Identities=14% Similarity=0.060 Sum_probs=82.7
Q ss_pred ccceEEEEEcCCCCCEEEEEeCCCCEEEEECCCccccceEEeeeccCCCCccEEEEEECCCCCeEEEEeCCCcEEEEeCC
Q 048012 250 ICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWDCDGKCIAGGIGDGSIQVWNLK 329 (616)
Q Consensus 250 ~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~g~~dg~I~iwd~~ 329 (616)
...+.++.+.+++ .++ ..+..|.+..- ...+....... . ......++++.+.++++.+++| ..|.+++=...
T Consensus 172 ~g~~~~i~~~~~g-~~v-~~g~~G~i~~s-~~~gg~tW~~~--~--~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d 243 (334)
T PRK13684 172 AGVVRNLRRSPDG-KYV-AVSSRGNFYST-WEPGQTAWTPH--Q--RNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPD 243 (334)
T ss_pred cceEEEEEECCCC-eEE-EEeCCceEEEE-cCCCCCeEEEe--e--CCCcccceeeeEcCCCCEEEEe-cCCEEEEccCC
Confidence 4567888999875 344 44455654431 11111111111 1 1223378999999999887776 46766542233
Q ss_pred CCCCCCCceeee-cCCCCCeEEEEEcCCCCeEEEEecCCcEEEEeCCCCCCcceEecC-CCCCCcceeEEECCCCCEEEE
Q 048012 330 PGWGSRPDIHVE-KGHSDDITALKFSSDGRILLSRSFDGSLKVWDLRKMKEPLKVFED-LPNNYAQTNVAFSPDEQLFLT 407 (616)
Q Consensus 330 ~~~~~~~~~~~~-~~h~~~V~~l~~spdg~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~-~~~~~~v~~v~fspdg~~l~~ 407 (616)
.+. ....+..- ..-...+.++.|.+++..++ ++.+|.|.. ....+ ...+.... .........+.|..+++.+++
T Consensus 244 ~G~-sW~~~~~~~~~~~~~l~~v~~~~~~~~~~-~G~~G~v~~-S~d~G-~tW~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (334)
T PRK13684 244 DLE-SWSKPIIPEITNGYGYLDLAYRTPGEIWA-GGGNGTLLV-SKDGG-KTWEKDPVGEEVPSNFYKIVFLDPEKGFVL 319 (334)
T ss_pred CCC-ccccccCCccccccceeeEEEcCCCCEEE-EcCCCeEEE-eCCCC-CCCeECCcCCCCCcceEEEEEeCCCceEEE
Confidence 331 11111110 11123578899999877555 455775543 33322 22222211 011124777888888888888
Q ss_pred eeccccccCCCceEEEEe
Q 048012 408 GTSVERESTTGGLLCFYD 425 (616)
Q Consensus 408 gs~~~~~~~~dg~i~iwd 425 (616)
|. .|.|.-|+
T Consensus 320 G~--------~G~il~~~ 329 (334)
T PRK13684 320 GQ--------RGVLLRYV 329 (334)
T ss_pred CC--------CceEEEec
Confidence 74 68776665
No 445
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=91.74 E-value=14 Score=38.72 Aligned_cols=113 Identities=12% Similarity=0.042 Sum_probs=60.5
Q ss_pred cceEEEEEcCCCCCEEEEEeCCCCEEEEECCCccccceEEee-eccCCCCccEEEEEECCCC------CeEEEEe-----
Q 048012 251 CGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKP-KLARPGRVAVTTCAWDCDG------KCIAGGI----- 318 (616)
Q Consensus 251 ~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~-~~~~~~~~~v~~~~~sp~g------~~l~~g~----- 318 (616)
..-+.|+|.|++ .+|++--..|.|++++..+.......... ............|+++|+- .+|++..
T Consensus 30 ~~Pw~maflPDG-~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvsyt~~~~ 108 (454)
T TIGR03606 30 NKPWALLWGPDN-QLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYISYTYKNG 108 (454)
T ss_pred CCceEEEEcCCC-eEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEEEEEeccCC
Confidence 356789999987 46666554699999986543221111111 1111124468999999874 3444442
Q ss_pred -----CCCcEEEEeCCCCC-CC---CCceeee---cCCCCCeEEEEEcCCCCeEEEEecC
Q 048012 319 -----GDGSIQVWNLKPGW-GS---RPDIHVE---KGHSDDITALKFSSDGRILLSRSFD 366 (616)
Q Consensus 319 -----~dg~I~iwd~~~~~-~~---~~~~~~~---~~h~~~V~~l~~spdg~~l~s~s~D 366 (616)
....|.-|.+.... .. ..++..+ ..|. -..|+|.|||.++++.+..
T Consensus 109 ~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~--GgrI~FgPDG~LYVs~GD~ 166 (454)
T TIGR03606 109 DKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHN--GGRLVFGPDGKIYYTIGEQ 166 (454)
T ss_pred CCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcC--CceEEECCCCcEEEEECCC
Confidence 12345555543210 00 1111111 1233 3478899999887776644
No 446
>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A ....
Probab=91.68 E-value=22 Score=38.36 Aligned_cols=108 Identities=20% Similarity=0.208 Sum_probs=58.5
Q ss_pred CCCCCeEEEEeCCCcEEEEeCCCCCCCCCceeeecCC-CCCeEEEEEcCCC-CeEEEEec--CCcEEEEeCCCCCCcceE
Q 048012 308 DCDGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGH-SDDITALKFSSDG-RILLSRSF--DGSLKVWDLRKMKEPLKV 383 (616)
Q Consensus 308 sp~g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~h-~~~V~~l~~spdg-~~l~s~s~--Dg~v~lwd~~~~~~~~~~ 383 (616)
..++..++.+..+|.|++..+.... ........+. ....+++++..+| .+|+.|+. |+.+..|... .+..
T Consensus 219 ~~~~~~~lL~~e~G~l~~l~l~~~~--~~i~i~~~g~~~~~~s~l~~l~~g~d~lf~gs~~gds~l~~~~~~----~l~~ 292 (504)
T PF10433_consen 219 DKDGDRILLQDEDGDLYLLTLDNDG--GSISITYLGTLCSIASSLTYLKNGGDYLFVGSEFGDSQLLQISLS----NLEV 292 (504)
T ss_dssp STTSSEEEEEETTSEEEEEEEEEEE--EEEEEEEEEE--S-ESEEEEESTT--EEEEEESSS-EEEEEEESE----SEEE
T ss_pred cCCCCEEEEEeCCCeEEEEEEEECC--CeEEEEEcCCcCChhheEEEEcCCCEEEEEEEecCCcEEEEEeCC----CcEE
Confidence 5567789999999999988876531 0111111122 4455677776665 46666664 5555555522 3555
Q ss_pred ecCCCCCCcceeEEECCC----CC------EEEEeeccccccCCCceEEEEe
Q 048012 384 FEDLPNNYAQTNVAFSPD----EQ------LFLTGTSVERESTTGGLLCFYD 425 (616)
Q Consensus 384 ~~~~~~~~~v~~v~fspd----g~------~l~~gs~~~~~~~~dg~i~iwd 425 (616)
+....+-++|..+++... .. .|++++. ...+|.|+++.
T Consensus 293 ~~~~~N~~Pi~D~~v~~~~~~~~~~~~~~~~lv~~sG----~g~~gsL~~lr 340 (504)
T PF10433_consen 293 LDSLPNWGPIVDFCVVDSSNSGQPSNPSSDQLVACSG----AGKRGSLRILR 340 (504)
T ss_dssp EEEE----SEEEEEEE-TSSSSS-------EEEEEES----SGGG-EEEEEE
T ss_pred EEeccCcCCccceEEeccccCCCCcccccceEEEEEC----cCCCCcEEEEe
Confidence 666667778888888531 21 4555542 22567888875
No 447
>TIGR01063 gyrA DNA gyrase, A subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV.
Probab=91.47 E-value=30 Score=39.52 Aligned_cols=217 Identities=12% Similarity=0.024 Sum_probs=108.0
Q ss_pred EECCCCCEEEEEEcCCcEEEEeCCCCccc---cccceecCCCCCCceEEEEecCCCCeEEEEeCCCeEEEEECCCCeeee
Q 048012 156 AVDHSGSRVLSGSYDYTVRMYDFQGMNSR---LQSFRQLEPSEGHQVRNLSWSPTSDRFLCVTGSAQAKIYDRDGLTLGE 232 (616)
Q Consensus 156 ~~sp~g~~lasgs~Dg~i~iwd~~~~~~~---~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~s~d~~v~vwd~~~~~~~~ 232 (616)
.+-++...+++-+.+|.|+.-........ ...........+..+..+......+.|+..+..|.+............
T Consensus 491 dli~~e~~~vllS~~GyIKri~~~~~~~~~~~~~g~s~~klKe~D~l~~~~~~~t~d~LllfTs~Grv~~l~~~~IP~~~ 570 (800)
T TIGR01063 491 DLIARENVVVTLSHNGYVKRVPVSAYRLQKRGGKGVSGADMKDDDFIEQLLVASTHDYLLFFTNRGKVYWLKVYQIPEAS 570 (800)
T ss_pred hccCcceEEEEEcCCCEEEecchhhhhhhcccCcCccccccCCCCeeEEEEEecCCCeEEEEeCCCcEEEEEhhhCcCCC
Confidence 34456677888899999988765432110 001111111233445555566667778888888877766543221110
Q ss_pred E-eeCceeEeecccCCCcccceEEEEEcC-CCCCEEEEEeCCCCEEEEECCCccccceEEe-eeccCCCCccEEEEEECC
Q 048012 233 F-VKGDMYIRDLKNTKGHICGLTCGEWHP-KTKETILTSSEDGSLRIWDVNEFKSQKQVIK-PKLARPGRVAVTTCAWDC 309 (616)
Q Consensus 233 ~-~~~~~~~~~~~~~~~h~~~v~~~~~~p-~~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~-~~~~~~~~~~v~~~~~sp 309 (616)
. ..|. .+..+..+..-..-|.++.... +....++..+.+|.++-.++.........-. ......+ ..+..+....
T Consensus 571 r~~~G~-~i~~ll~L~~~E~Iv~~i~~~~~~~~~~lvliT~~GyiKRi~l~~~~~~~r~G~~aiklke~-D~lv~v~~~~ 648 (800)
T TIGR01063 571 RTAKGK-PIVNLLPLQPDERITAILSVKEFDDGLYLFFATKNGVVKKTSLTEFSNIRSNGIIAIKLDDG-DELISVRLTS 648 (800)
T ss_pred cCCCCc-CHHHhccCCCCCeEEEEEEeccCCCCCEEEEEeCCCEEEEEEhHHhhhhccCCcccccCCCC-CEEEEEEEeC
Confidence 0 1111 1111112222223344454322 1224788999999999988765432221100 0000112 2343433333
Q ss_pred CCCeEEEEeCCCcEEEEeCCCC----CCC-CCceeeecCCCCCeEEEEEcCCCCeEEEEecCCcEEEEeCC
Q 048012 310 DGKCIAGGIGDGSIQVWNLKPG----WGS-RPDIHVEKGHSDDITALKFSSDGRILLSRSFDGSLKVWDLR 375 (616)
Q Consensus 310 ~g~~l~~g~~dg~I~iwd~~~~----~~~-~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~v~lwd~~ 375 (616)
....++..+..|.+..+....- ... ......+. -...|.++..-.+...|+..+..|.++...+.
T Consensus 649 ~~d~lll~Ts~Gr~~r~~v~eIp~~gr~~~Gv~~i~L~-~~E~Vv~~~~v~~~~~ll~vT~~G~~Kr~~l~ 718 (800)
T TIGR01063 649 GDDEVMLGSKNGKAVRFPEEDVRPMGRAARGVRGIKLK-NEDFVVSLLVVSEESYLLIVTENGYGKRTSIE 718 (800)
T ss_pred CCCEEEEEECCCcEEEEEhhhcCCcCCCCCCeecccCC-CCCEEEEEEEeccccEEEEEecCCcEEEEEHH
Confidence 4456777777888776655321 000 00111111 12335555544455678888889988888764
No 448
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=91.16 E-value=0.96 Score=29.75 Aligned_cols=31 Identities=16% Similarity=0.447 Sum_probs=26.5
Q ss_pred ceEEEEEcCCCC--CEEEEEeCCCCEEEEECCC
Q 048012 252 GLTCGEWHPKTK--ETILTSSEDGSLRIWDVNE 282 (616)
Q Consensus 252 ~v~~~~~~p~~~--~~l~s~s~Dg~v~iwd~~~ 282 (616)
.|.++.|+|... .+|+.+-.-+.|.|+|+++
T Consensus 2 AvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 2 AVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 578999998655 6888888889999999985
No 449
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=91.01 E-value=17 Score=37.91 Aligned_cols=163 Identities=14% Similarity=0.112 Sum_probs=87.8
Q ss_pred cccCCCcccceEEEEEcCCCCCEE-EEEeCCCCEEEEECCCccccceEEeeeccCCCCccEEEEEECCCCC-------eE
Q 048012 243 LKNTKGHICGLTCGEWHPKTKETI-LTSSEDGSLRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWDCDGK-------CI 314 (616)
Q Consensus 243 ~~~~~~h~~~v~~~~~~p~~~~~l-~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~-------~l 314 (616)
+....|..-....+..|.+...+| ..|+....++-.|+..++.+....... .| -+.|.|..+ .-
T Consensus 459 vs~~~GKSidp~K~mlh~~dssli~~dg~~~~kLykmDIErGkvveeW~~~d-------dv-vVqy~p~~kf~qmt~eqt 530 (776)
T COG5167 459 VSDDGGKSIDPEKIMLHDNDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKD-------DV-VVQYNPYFKFQQMTDEQT 530 (776)
T ss_pred ccCCCCCcCChhhceeecCCcceEEecCCCcccceeeecccceeeeEeecCC-------cc-eeecCCchhHHhcCccce
Confidence 333344433444444444443444 445555667777777766554432211 22 455666432 23
Q ss_pred EEEeCCCcEEEEeCCCCCCCCCceeeec--CCCCCeEEEEEcCCCCeEEEEecCCcEEEEeCCCCCCcceEecCCCCCCc
Q 048012 315 AGGIGDGSIQVWNLKPGWGSRPDIHVEK--GHSDDITALKFSSDGRILLSRSFDGSLKVWDLRKMKEPLKVFEDLPNNYA 392 (616)
Q Consensus 315 ~~g~~dg~I~iwd~~~~~~~~~~~~~~~--~h~~~V~~l~~spdg~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~ 392 (616)
++|-.+..|.-.|.+-.. .+..+...+ .......|..-. ..-++|.+|..|-|+|||.- +......+..+ +..
T Consensus 531 lvGlS~~svFrIDPR~~g-NKi~v~esKdY~tKn~Fss~~tT-esGyIa~as~kGDirLyDRi-g~rAKtalP~l--G~a 605 (776)
T COG5167 531 LVGLSDYSVFRIDPRARG-NKIKVVESKDYKTKNKFSSGMTT-ESGYIAAASRKGDIRLYDRI-GKRAKTALPGL--GDA 605 (776)
T ss_pred EEeecccceEEecccccC-Cceeeeeehhccccccccccccc-cCceEEEecCCCceeeehhh-cchhhhcCccc--ccc
Confidence 456567777777776431 111111111 111222333332 33489999999999999954 23323333332 234
Q ss_pred ceeEEECCCCCEEEEeeccccccCCCceEEEEeC
Q 048012 393 QTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDR 426 (616)
Q Consensus 393 v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~ 426 (616)
|..+..+.+|++|++.+ ...|.+-|+
T Consensus 606 Ik~idvta~Gk~ilaTC--------k~yllL~d~ 631 (776)
T COG5167 606 IKHIDVTANGKHILATC--------KNYLLLTDV 631 (776)
T ss_pred eeeeEeecCCcEEEEee--------cceEEEEec
Confidence 88889999999988876 456666665
No 450
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=90.98 E-value=23 Score=37.25 Aligned_cols=107 Identities=15% Similarity=0.242 Sum_probs=61.1
Q ss_pred cEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCCCCCceeee----c-CCCCCeEEEEEcCCC------CeEEEEe-c---
Q 048012 301 AVTTCAWDCDGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVE----K-GHSDDITALKFSSDG------RILLSRS-F--- 365 (616)
Q Consensus 301 ~v~~~~~sp~g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~----~-~h~~~V~~l~~spdg------~~l~s~s-~--- 365 (616)
..+.++|.|+|++|++--..|.|++++...+. ...+..+ . ........|+|+|+- .+|+... .
T Consensus 31 ~Pw~maflPDG~llVtER~~G~I~~v~~~~~~--~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvsyt~~~~ 108 (454)
T TIGR03606 31 KPWALLWGPDNQLWVTERATGKILRVNPETGE--VKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYISYTYKNG 108 (454)
T ss_pred CceEEEEcCCCeEEEEEecCCEEEEEeCCCCc--eeeeecCCceeccCCCCceeeEEECCCccccCCCcEEEEEEeccCC
Confidence 46889999999887776557999999865431 1111111 1 124668999999874 2343332 1
Q ss_pred ------CCcEEEEeCCCC----CCcceEecCCCC--CCcceeEEECCCCCEEEEee
Q 048012 366 ------DGSLKVWDLRKM----KEPLKVFEDLPN--NYAQTNVAFSPDEQLFLTGT 409 (616)
Q Consensus 366 ------Dg~v~lwd~~~~----~~~~~~~~~~~~--~~~v~~v~fspdg~~l~~gs 409 (616)
...|.-|.+... .....++...+. ...-..|+|.|||.++++.+
T Consensus 109 ~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG~LYVs~G 164 (454)
T TIGR03606 109 DKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDGKIYYTIG 164 (454)
T ss_pred CCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCCcEEEEEC
Confidence 223444544321 112233333321 12356789999998777554
No 451
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=90.69 E-value=18 Score=35.55 Aligned_cols=94 Identities=22% Similarity=0.222 Sum_probs=62.2
Q ss_pred EEEcCCCCeEEEEecCCcEEEEeCCCCCCcceEecCCCCCCcceeEEECCCCCEEEEeeccccccC-------------C
Q 048012 351 LKFSSDGRILLSRSFDGSLKVWDLRKMKEPLKVFEDLPNNYAQTNVAFSPDEQLFLTGTSVEREST-------------T 417 (616)
Q Consensus 351 l~~spdg~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~gs~~~~~~~-------------~ 417 (616)
-.|+ +|++.++-+..|.|.-+|..++.. ..+...+. ....++|. |.++++|.+..+... .
T Consensus 208 PRWh-dgrLwvldsgtGev~~vD~~~G~~--e~Va~vpG--~~rGL~f~--G~llvVgmSk~R~~~~f~glpl~~~l~~~ 280 (335)
T TIGR03032 208 PRWY-QGKLWLLNSGRGELGYVDPQAGKF--QPVAFLPG--FTRGLAFA--GDFAFVGLSKLRESRVFGGLPIEERLDAL 280 (335)
T ss_pred CcEe-CCeEEEEECCCCEEEEEcCCCCcE--EEEEECCC--CCccccee--CCEEEEEeccccCCCCcCCCchhhhhhhh
Confidence 3443 788888888999999999875542 22222332 36789998 999999886544211 2
Q ss_pred CceEEEEeCCCCceEEEEecCCC-CCeEEEEEcCC
Q 048012 418 GGLLCFYDREKLELVSRVGISPA-CSVVQCAWHPK 451 (616)
Q Consensus 418 dg~i~iwd~~~~~~~~~~~~~~~-~~v~~~~~~p~ 451 (616)
..-|.+.|+.+|..+..+.+... ..+.+++.-|.
T Consensus 281 ~CGv~vidl~tG~vv~~l~feg~v~EifdV~vLPg 315 (335)
T TIGR03032 281 GCGVAVIDLNSGDVVHWLRFEGVIEEIYDVAVLPG 315 (335)
T ss_pred cccEEEEECCCCCEEEEEEeCCceeEEEEEEEecC
Confidence 24478889999998888876432 33455555554
No 452
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=90.39 E-value=0.19 Score=54.92 Aligned_cols=123 Identities=15% Similarity=0.157 Sum_probs=72.6
Q ss_pred EEecCCcccEEEEEECCC-CCEEEEEEcCCcEEEEeCCCCccccccc--eecCCCCCCceEEEEecC---CCCeEEEEeC
Q 048012 143 IVLKGHTKIVSALAVDHS-GSRVLSGSYDYTVRMYDFQGMNSRLQSF--RQLEPSEGHQVRNLSWSP---TSDRFLCVTG 216 (616)
Q Consensus 143 ~~l~~H~~~V~~v~~sp~-g~~lasgs~Dg~i~iwd~~~~~~~~~~~--~~~~~~~~~~v~~l~~sp---~g~~l~~~s~ 216 (616)
..++|..+.|-.++|-.. ...++ -.-|.+.||++.-....+++- .......+..+.-+.|.| +.-++.++-.
T Consensus 126 ~l~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~ 203 (1283)
T KOG1916|consen 126 ELAKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLK 203 (1283)
T ss_pred HHHhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccC
Confidence 456778888888888421 11222 223678899886433332222 222223444456666665 4455666667
Q ss_pred CCeEEEEECCCCeeeeEeeCceeEeecccCCCcccceEEEE-----------EcCCCCCEEEEEeCCCCEEEEECC
Q 048012 217 SAQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGE-----------WHPKTKETILTSSEDGSLRIWDVN 281 (616)
Q Consensus 217 d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~-----------~~p~~~~~l~s~s~Dg~v~iwd~~ 281 (616)
++.+++..++..... .+.+|...+..++ .+||| ..|+.++.||.+++|.+.
T Consensus 204 ~~~i~lL~~~ra~~~-------------l~rsHs~~~~d~a~~~~g~~~l~~lSpDG-tv~a~a~~dG~v~f~Qiy 265 (1283)
T KOG1916|consen 204 GGEIRLLNINRALRS-------------LFRSHSQRVTDMAFFAEGVLKLASLSPDG-TVFAWAISDGSVGFYQIY 265 (1283)
T ss_pred CCceeEeeechHHHH-------------HHHhcCCCcccHHHHhhchhhheeeCCCC-cEEEEeecCCccceeeee
Confidence 788888877644321 1234555444433 57877 488899999999998865
No 453
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=90.24 E-value=38 Score=38.47 Aligned_cols=26 Identities=23% Similarity=0.273 Sum_probs=22.3
Q ss_pred EEEEeeccccccCCCceEEEEeCCCCceEEEEe
Q 048012 404 LFLTGTSVERESTTGGLLCFYDREKLELVSRVG 436 (616)
Q Consensus 404 ~l~~gs~~~~~~~~dg~i~iwd~~~~~~~~~~~ 436 (616)
.|+.++ .+|.++++|.++|+.+..+.
T Consensus 461 ~v~~~~-------K~G~~~vlDr~tG~~l~~~~ 486 (764)
T TIGR03074 461 ALVAPT-------KQGQIYVLDRRTGEPIVPVE 486 (764)
T ss_pred EEEEEC-------CCCEEEEEECCCCCEEeece
Confidence 677777 89999999999999887653
No 454
>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A ....
Probab=90.04 E-value=31 Score=37.23 Aligned_cols=134 Identities=14% Similarity=0.202 Sum_probs=70.8
Q ss_pred cCCCCeEEEEecCCcEEEEeCCCCCC--cceEecCCCCCCcceeEEECCCC-CEEEEeeccccccCCCceEEEEeCCCCc
Q 048012 354 SSDGRILLSRSFDGSLKVWDLRKMKE--PLKVFEDLPNNYAQTNVAFSPDE-QLFLTGTSVERESTTGGLLCFYDREKLE 430 (616)
Q Consensus 354 spdg~~l~s~s~Dg~v~lwd~~~~~~--~~~~~~~~~~~~~v~~v~fspdg-~~l~~gs~~~~~~~~dg~i~iwd~~~~~ 430 (616)
..++..++.+..+|.+.+..+..... .+..+... ....+++++-.+| .+|+.|+ ...|+.+.-|.....+
T Consensus 219 ~~~~~~~lL~~e~G~l~~l~l~~~~~~i~i~~~g~~--~~~~s~l~~l~~g~d~lf~gs-----~~gds~l~~~~~~~l~ 291 (504)
T PF10433_consen 219 DKDGDRILLQDEDGDLYLLTLDNDGGSISITYLGTL--CSIASSLTYLKNGGDYLFVGS-----EFGDSQLLQISLSNLE 291 (504)
T ss_dssp STTSSEEEEEETTSEEEEEEEEEEEEEEEEEEEEE----S-ESEEEEESTT--EEEEEE-----SSS-EEEEEEESESEE
T ss_pred cCCCCEEEEEeCCCeEEEEEEEECCCeEEEEEcCCc--CChhheEEEEcCCCEEEEEEE-----ecCCcEEEEEeCCCcE
Confidence 44677888899999998887765331 12222221 2235667776665 3666665 2367888888877777
Q ss_pred eEEEEecCCCCCeEEEEEcCC----CC------cEEEEeccCCCCceEEEecccCCCCCcEEEEecCCcceeccccc
Q 048012 431 LVSRVGISPACSVVQCAWHPK----LN------QIFATAGDKSQGGTHILYDPRLSERGALVCVARAPRKKSVDDFE 497 (616)
Q Consensus 431 ~~~~~~~~~~~~v~~~~~~p~----~~------~l~~~~~d~~~~~~~~v~~~~~s~~g~~l~s~~~d~~~~~wd~~ 497 (616)
.+..+. .-++|..+..-+. .. +|+++++-+ ..+.+++..-...+++..++....++...+|-+.
T Consensus 292 ~~~~~~--N~~Pi~D~~v~~~~~~~~~~~~~~~~lv~~sG~g-~~gsL~~lr~Gi~~~~~~~~~~~l~~v~~iW~l~ 365 (504)
T PF10433_consen 292 VLDSLP--NWGPIVDFCVVDSSNSGQPSNPSSDQLVACSGAG-KRGSLRILRNGIGIEGLELASSELPGVTGIWTLK 365 (504)
T ss_dssp EEEEE------SEEEEEEE-TSSSSS-------EEEEEESSG-GG-EEEEEEESBEEE--EEEEEEESTEEEEEEE-
T ss_pred EEEecc--CcCCccceEEeccccCCCCcccccceEEEEECcC-CCCcEEEEeccCCceeeeeeccCCCCceEEEEee
Confidence 777763 4578888887532 22 777777643 2233333332222333344444444444555553
No 455
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.
Probab=89.56 E-value=43 Score=38.15 Aligned_cols=70 Identities=17% Similarity=0.026 Sum_probs=48.0
Q ss_pred cEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCCCCCc---------eeee------cCCCCCeEEEEEcCCCCeEEEEec
Q 048012 301 AVTTCAWDCDGKCIAGGIGDGSIQVWNLKPGWGSRPD---------IHVE------KGHSDDITALKFSSDGRILLSRSF 365 (616)
Q Consensus 301 ~v~~~~~sp~g~~l~~g~~dg~I~iwd~~~~~~~~~~---------~~~~------~~h~~~V~~l~~spdg~~l~s~s~ 365 (616)
.|.+++...-+.+++....||+|.++|..+-...... +..+ ..+...+..++|||.+-.++.-..
T Consensus 261 ~V~si~~~~~~~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~~~~~v~s~~~~Gf~fp~~~~~~~vafSPt~c~~v~~~~ 340 (753)
T PF11635_consen 261 RVVSITSPELDIVVAFAFSDGSIEFRDRNTMKELNETRTNGEPPNTVTSLFQAGFHFPCIQPPLHVAFSPTMCSLVQIDE 340 (753)
T ss_pred eEEEEEecccCcEEEEEEcCCeEEEEecCcchhhcccccccCCccccccccccccccccCCCCceEEECcccceEEEEec
Confidence 5777777777889999999999999997653100000 0000 011123456889999999999999
Q ss_pred CCcEE
Q 048012 366 DGSLK 370 (616)
Q Consensus 366 Dg~v~ 370 (616)
+|.+.
T Consensus 341 ~~~~~ 345 (753)
T PF11635_consen 341 DGKTK 345 (753)
T ss_pred CCCce
Confidence 99866
No 456
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=89.44 E-value=26 Score=35.44 Aligned_cols=113 Identities=16% Similarity=0.162 Sum_probs=58.1
Q ss_pred eEEEEecCCCCeEEEEeCCCeEEEEECCCCeeeeEeeCceeEeec-ccCCCcccceEEEEEcCC---CCCEEEEEeCC--
Q 048012 199 VRNLSWSPTSDRFLCVTGSAQAKIYDRDGLTLGEFVKGDMYIRDL-KNTKGHICGLTCGEWHPK---TKETILTSSED-- 272 (616)
Q Consensus 199 v~~l~~sp~g~~l~~~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~-~~~~~h~~~v~~~~~~p~---~~~~l~s~s~D-- 272 (616)
.+.|+|.|+|+.|+ +...|.|++++.++.....+ ..+ .........+..++++|+ +..+.++.+..
T Consensus 4 P~~~a~~pdG~l~v-~e~~G~i~~~~~~g~~~~~v-------~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~ 75 (331)
T PF07995_consen 4 PRSMAFLPDGRLLV-AERSGRIWVVDKDGSLKTPV-------ADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADE 75 (331)
T ss_dssp EEEEEEETTSCEEE-EETTTEEEEEETTTEECEEE-------EE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-T
T ss_pred ceEEEEeCCCcEEE-EeCCceEEEEeCCCcCccee-------cccccccccccCCcccceeccccCCCCEEEEEEEcccC
Confidence 67899999986655 66799999999444331111 111 223445668899999994 22333333321
Q ss_pred ------CCEEEEECCCc----cccceEEeeecc-CCCCccEEEEEECCCCCeEEEEeC
Q 048012 273 ------GSLRIWDVNEF----KSQKQVIKPKLA-RPGRVAVTTCAWDCDGKCIAGGIG 319 (616)
Q Consensus 273 ------g~v~iwd~~~~----~~~~~~~~~~~~-~~~~~~v~~~~~sp~g~~l~~g~~ 319 (616)
..|.-|.+... .....+...... .........++|.|+|.+.++.+.
T Consensus 76 ~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~ 133 (331)
T PF07995_consen 76 DGGDNDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGD 133 (331)
T ss_dssp SSSSEEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-
T ss_pred CCCCcceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCC
Confidence 12333443322 111222222111 112224567999999977666554
No 457
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=89.33 E-value=1.8 Score=40.69 Aligned_cols=68 Identities=25% Similarity=0.446 Sum_probs=46.5
Q ss_pred ECCCCCeEEEEeCCCcEEEEeCCCCCCCCCc---eeeec-------CCCCCeEEEEEcCCCCeEEEEecCCcEEEEeCC
Q 048012 307 WDCDGKCIAGGIGDGSIQVWNLKPGWGSRPD---IHVEK-------GHSDDITALKFSSDGRILLSRSFDGSLKVWDLR 375 (616)
Q Consensus 307 ~sp~g~~l~~g~~dg~I~iwd~~~~~~~~~~---~~~~~-------~h~~~V~~l~~spdg~~l~s~s~Dg~v~lwd~~ 375 (616)
+..++++|++-+.+|.+++||+.+.....+. ...+. .....|.++.++.+|.-|++-+ +|..+.|+..
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~ 95 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPD 95 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEeccc
Confidence 4457889999999999999999976322111 11121 3445678888888887777665 5677888765
No 458
>PHA02790 Kelch-like protein; Provisional
Probab=89.31 E-value=23 Score=38.00 Aligned_cols=149 Identities=11% Similarity=0.033 Sum_probs=67.6
Q ss_pred CEEEEEeCC--CCEEEEECCCccccceEEeeeccCCCCccEEEEEECCCCCeEEEEeCCC---cEEEEeCCCCCCCCCce
Q 048012 264 ETILTSSED--GSLRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWDCDGKCIAGGIGDG---SIQVWNLKPGWGSRPDI 338 (616)
Q Consensus 264 ~~l~s~s~D--g~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~g~~dg---~I~iwd~~~~~~~~~~~ 338 (616)
.+.+.|+.+ .++..||..+..- ....+.. ..+.....++ -+|++.+.|+.++ .+..||.++. ....+
T Consensus 320 ~iYviGG~~~~~sve~ydp~~n~W--~~~~~l~--~~r~~~~~~~--~~g~IYviGG~~~~~~~ve~ydp~~~--~W~~~ 391 (480)
T PHA02790 320 KLYVVGGLPNPTSVERWFHGDAAW--VNMPSLL--KPRCNPAVAS--INNVIYVIGGHSETDTTTEYLLPNHD--QWQFG 391 (480)
T ss_pred EEEEECCcCCCCceEEEECCCCeE--EECCCCC--CCCcccEEEE--ECCEEEEecCcCCCCccEEEEeCCCC--EEEeC
Confidence 577777754 3577888654321 1111111 1111122222 3577778877654 4778888764 11221
Q ss_pred eeecCCCCCeEEEEEcCCCCeEEEEecCCcEEEEeCCCCCCcceEecCCCCCCcceeEEECCCCCEEEEeeccccccCCC
Q 048012 339 HVEKGHSDDITALKFSSDGRILLSRSFDGSLKVWDLRKMKEPLKVFEDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTG 418 (616)
Q Consensus 339 ~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~d 418 (616)
..+.........+.+ ++++.+.|+ .+.+||..+.. ...+...+....-.+++ .-++++.++|+... ...-
T Consensus 392 ~~m~~~r~~~~~~~~--~~~IYv~GG---~~e~ydp~~~~--W~~~~~m~~~r~~~~~~-v~~~~IYviGG~~~--~~~~ 461 (480)
T PHA02790 392 PSTYYPHYKSCALVF--GRRLFLVGR---NAEFYCESSNT--WTLIDDPIYPRDNPELI-IVDNKLLLIGGFYR--GSYI 461 (480)
T ss_pred CCCCCccccceEEEE--CCEEEEECC---ceEEecCCCCc--EeEcCCCCCCccccEEE-EECCEEEEECCcCC--Cccc
Confidence 111111111222232 466666653 57789887532 22222222111111222 23667777776210 0011
Q ss_pred ceEEEEeCCCCc
Q 048012 419 GLLCFYDREKLE 430 (616)
Q Consensus 419 g~i~iwd~~~~~ 430 (616)
..+..||..+.+
T Consensus 462 ~~ve~Yd~~~~~ 473 (480)
T PHA02790 462 DTIEVYNNRTYS 473 (480)
T ss_pred ceEEEEECCCCe
Confidence 356667665543
No 459
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=89.05 E-value=23 Score=34.34 Aligned_cols=162 Identities=14% Similarity=0.069 Sum_probs=103.5
Q ss_pred ceEEEEEcCCCCCEEEEEeCCCCEEEEECCCccccceEEeeeccCCCCccEEEEEECCCCCeEEEEeCCCcEEEEeCCCC
Q 048012 252 GLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWDCDGKCIAGGIGDGSIQVWNLKPG 331 (616)
Q Consensus 252 ~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~g~~dg~I~iwd~~~~ 331 (616)
-+..+.++. +++..+..+.-++|.|+.+......+-.... .+ .-.+ |.-.|+++.++..|.-+.++|+...
T Consensus 88 l~~Dv~vse---~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt--~g--yayg--v~vsGn~aYVadlddgfLivdvsdp 158 (370)
T COG5276 88 LFADVRVSE---EYVYVADWSSGLRIVDISTPDSPTLIGFLNT--DG--YAYG--VYVSGNYAYVADLDDGFLIVDVSDP 158 (370)
T ss_pred hhheeEecc---cEEEEEcCCCceEEEeccCCCCcceeccccC--Cc--eEEE--EEecCCEEEEeeccCcEEEEECCCC
Confidence 345566653 4777777888899999988655443321111 01 2233 4446899999987777889999876
Q ss_pred CCCCCcee-eecCCCCCeEEEEEcCCCCeEEEEecCCcEEEEeCCCCCCcceEecCCCCCCcceeEEECCCCCEEEEeec
Q 048012 332 WGSRPDIH-VEKGHSDDITALKFSSDGRILLSRSFDGSLKVWDLRKMKEPLKVFEDLPNNYAQTNVAFSPDEQLFLTGTS 410 (616)
Q Consensus 332 ~~~~~~~~-~~~~h~~~V~~l~~spdg~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~gs~ 410 (616)
..+.+. ...........++.| |++-..+..|+-+.|-|+.+...++..-. ......+.++..+++.-+++...
T Consensus 159 --ssP~lagrya~~~~d~~~v~IS--Gn~AYvA~~d~GL~ivDVSnp~sPvli~~-~n~g~g~~sv~vsdnr~y~vvy~- 232 (370)
T COG5276 159 --SSPQLAGRYALPGGDTHDVAIS--GNYAYVAWRDGGLTIVDVSNPHSPVLIGS-YNTGPGTYSVSVSDNRAYLVVYD- 232 (370)
T ss_pred --CCceeeeeeccCCCCceeEEEe--cCeEEEEEeCCCeEEEEccCCCCCeEEEE-EecCCceEEEEecCCeeEEEEcc-
Confidence 333333 233333445677777 77888888999999999998766544322 12222478888888887777764
Q ss_pred cccccCCCceEEEEeCCCCceEEEEe
Q 048012 411 VERESTTGGLLCFYDREKLELVSRVG 436 (616)
Q Consensus 411 ~~~~~~~dg~i~iwd~~~~~~~~~~~ 436 (616)
--+.+-|..+.+....+.
T Consensus 233 --------egvlivd~s~~ssp~~~g 250 (370)
T COG5276 233 --------EGVLIVDVSGPSSPTVFG 250 (370)
T ss_pred --------cceEEEecCCCCCceEee
Confidence 335577777666554443
No 460
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=88.98 E-value=0.087 Score=53.55 Aligned_cols=160 Identities=14% Similarity=0.204 Sum_probs=105.9
Q ss_pred EEEEEECCCCCeEEEEeCCCcEEEEeCCCCCCCCCceeeecCCCCCeEEEEEcCCCCeEEE-EecCCcEEEEeCCCCCCc
Q 048012 302 VTTCAWDCDGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHSDDITALKFSSDGRILLS-RSFDGSLKVWDLRKMKEP 380 (616)
Q Consensus 302 v~~~~~sp~g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s-~s~Dg~v~lwd~~~~~~~ 380 (616)
.....|-+.+.-++.++.+..|..||-... .+.. ....+....++|.-++..++. +-..+.+.|||+.+...
T Consensus 37 pi~~~w~~e~~nlavaca~tiv~~YD~agq-----~~le-~n~tg~aldm~wDkegdvlavlAek~~piylwd~n~eyt- 109 (615)
T KOG2247|consen 37 PIIHRWRPEGHNLAVACANTIVIYYDKAGQ-----VILE-LNPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYT- 109 (615)
T ss_pred cceeeEecCCCceehhhhhhHHHhhhhhcc-----eecc-cCCchhHhhhhhccccchhhhhhhcCCCeeechhhhhhH-
Confidence 345568888888999999999999996532 2221 223345667888888776554 44678999999986332
Q ss_pred ceEecCCCCCCcceeEEECCCCCEEEEeeccccccCCCceEEEEeCCCCceEEEEecCCCCCeEEEEEcCCCCcEEEEec
Q 048012 381 LKVFEDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREKLELVSRVGISPACSVVQCAWHPKLNQIFATAG 460 (616)
Q Consensus 381 ~~~~~~~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~ 460 (616)
+.++. ...+.-.-+.|++....++.+. ..|.+.||+..+.+.+-... .|..++++++|.+.+..+..++.
T Consensus 110 -qqLE~-gg~~s~sll~wsKg~~el~ig~-------~~gn~viynhgtsR~iiv~G-kh~RRgtq~av~lEd~vil~dcd 179 (615)
T KOG2247|consen 110 -QQLES-GGTSSKSLLAWSKGTPELVIGN-------NAGNIVIYNHGTSRRIIVMG-KHQRRGTQIAVTLEDYVILCDCD 179 (615)
T ss_pred -HHHhc-cCcchHHHHhhccCCccccccc-------cccceEEEeccchhhhhhhc-ccccceeEEEecccceeeecCcH
Confidence 12211 1112223378999999999998 78999999988877665553 26678999999999776665554
Q ss_pred cC-----CCCceEEEecccCCCC
Q 048012 461 DK-----SQGGTHILYDPRLSER 478 (616)
Q Consensus 461 d~-----~~~~~~~v~~~~~s~~ 478 (616)
.- ..+.+..++.+.--|+
T Consensus 180 ~~L~v~~qegeta~ltevggepd 202 (615)
T KOG2247|consen 180 NTLSVTTQEGETASLTEVGGEPD 202 (615)
T ss_pred HHHHHhhhccceeeeeeccCccc
Confidence 32 2345556665544443
No 461
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=88.86 E-value=19 Score=39.24 Aligned_cols=80 Identities=15% Similarity=0.315 Sum_probs=48.6
Q ss_pred CCCCCeEEEEEcCCCCeEEEEecCCcEEEEeCCCCCCcceEecCCCCCCcceeEEECCCCCEEEEeeccccccCCCceEE
Q 048012 343 GHSDDITALKFSSDGRILLSRSFDGSLKVWDLRKMKEPLKVFEDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLC 422 (616)
Q Consensus 343 ~h~~~V~~l~~spdg~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~ 422 (616)
.|.+.|--|..+..+..|+.....-.+.++|+.+....+ ++. ..+-+.|-|-...|+.-+ .| .++
T Consensus 335 nh~~~vdwielne~~~kllfrdkk~kl~l~di~s~qksm-iln------fcsymqwvp~sdvivaqn-------~d-nl~ 399 (1636)
T KOG3616|consen 335 NHEGAVDWIELNERAHKLLFRDKKLKLHLVDIESCQKSM-ILN------FCSYMQWVPGSDVIVAQN-------GD-NLC 399 (1636)
T ss_pred cccccccceeccchhhhhhcccccceeEEEEcccchHHH-HHH------HhhhheeccCcceEEecC-------CC-ceE
Confidence 355666666666666666666666677888887643211 111 145578999888877765 44 455
Q ss_pred EE-eCCCCceEEEEec
Q 048012 423 FY-DREKLELVSRVGI 437 (616)
Q Consensus 423 iw-d~~~~~~~~~~~~ 437 (616)
|| ++.-.+.+..+.+
T Consensus 400 iwyn~d~peqvt~~ki 415 (1636)
T KOG3616|consen 400 IWYNIDAPEQVTMFKI 415 (1636)
T ss_pred EEecCCcchhheeeEe
Confidence 55 5666666665554
No 462
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=88.44 E-value=7.7 Score=36.97 Aligned_cols=126 Identities=18% Similarity=0.252 Sum_probs=71.2
Q ss_pred EEEEEECCCCCeEEEEeC-C--CcEEEEeCCCCCCCCCcee--eecCCCCCeEEEEEcCCCCeEEEEecCC-cEEEEeCC
Q 048012 302 VTTCAWDCDGKCIAGGIG-D--GSIQVWNLKPGWGSRPDIH--VEKGHSDDITALKFSSDGRILLSRSFDG-SLKVWDLR 375 (616)
Q Consensus 302 v~~~~~sp~g~~l~~g~~-d--g~I~iwd~~~~~~~~~~~~--~~~~h~~~V~~l~~spdg~~l~s~s~Dg-~v~lwd~~ 375 (616)
+.+-++.++|++|.+|+. + ..|++|+............ .......+--++..-+||+.|+.|+... +..+|.-.
T Consensus 69 CSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L~DG~vlIvGG~~~~t~E~~P~~ 148 (243)
T PF07250_consen 69 CSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTLPDGRVLIVGGSNNPTYEFWPPK 148 (243)
T ss_pred ccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceECCCCCEEEEeCcCCCcccccCCc
Confidence 444467899999999875 3 3588888644100001111 1112334445566678999999998765 35555543
Q ss_pred CCCC-cce--EecCC---CCCCcceeEEECCCCCEEEEeeccccccCCCceEEEEeCCCCceEEEEe
Q 048012 376 KMKE-PLK--VFEDL---PNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREKLELVSRVG 436 (616)
Q Consensus 376 ~~~~-~~~--~~~~~---~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~~~~~~~~~ 436 (616)
.... ... .+... .....--.+...|+|++++.+. .+ -.|||..+.+.++.+.
T Consensus 149 ~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an-------~~--s~i~d~~~n~v~~~lP 206 (243)
T PF07250_consen 149 GPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFAN-------RG--SIIYDYKTNTVVRTLP 206 (243)
T ss_pred cCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEc-------CC--cEEEeCCCCeEEeeCC
Confidence 2111 111 11110 1111123467789999999986 33 3478988887777764
No 463
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=88.16 E-value=32 Score=37.67 Aligned_cols=187 Identities=15% Similarity=0.192 Sum_probs=0.0
Q ss_pred ccccccccCCCCCcceEEecCCcccEEEEEECCCCCEEEEEEcCCcEEEEeC--CCCcc--ccccceecCCCCCCceEEE
Q 048012 127 EEEGEENRHQIPMSNEIVLKGHTKIVSALAVDHSGSRVLSGSYDYTVRMYDF--QGMNS--RLQSFRQLEPSEGHQVRNL 202 (616)
Q Consensus 127 ~~~~~~~~~~~p~~~~~~l~~H~~~V~~v~~sp~g~~lasgs~Dg~i~iwd~--~~~~~--~~~~~~~~~~~~~~~v~~l 202 (616)
...++..........+..++- ...|-.|.|..++..+++.-..|.|.+||+ ..... ..............-|...
T Consensus 108 ~~~~~~~~~~~e~~~~~~~kl-~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys~fv~~~ 186 (670)
T PF10395_consen 108 VGSTEDGTVNSETTNEFELKL-DDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYSKFVNDF 186 (670)
T ss_pred CccccccccCccccceEEEEc-ccceEEEEEecCCCEEEEEEcCCcEEEEeccccccccccccccccccceehhhhhccc
Q ss_pred EecCCCCeEEEEeC-CC---eEEEEEC--CCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEE
Q 048012 203 SWSPTSDRFLCVTG-SA---QAKIYDR--DGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLR 276 (616)
Q Consensus 203 ~~sp~g~~l~~~s~-d~---~v~vwd~--~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~ 276 (616)
.......++++.+. ++ ..+++.+ +...+ ..+....-+........|+-..+.+..- .+++|.
T Consensus 187 ~~~~~~~~ll~v~~~~~~k~~ykL~~l~~~~~~~----------~El~s~~~e~~~~~~s~f~Y~~G~LY~l--~~~~i~ 254 (670)
T PF10395_consen 187 ELENGKDLLLTVSQLSNSKLSYKLISLSNESSSI----------FELSSTILENFGLEDSKFCYQFGKLYQL--SKKTIS 254 (670)
T ss_pred ccccCCceEEEEEEcCCCcEEEEEEEeccCCcce----------EEeehheeccCCcccceEEEeCCEEEEE--eCCEEE
Q ss_pred EEECCCccccceEEeeeccCCCCccEEEEEECCCCCeEEEEeCCCcEEEEeC
Q 048012 277 IWDVNEFKSQKQVIKPKLARPGRVAVTTCAWDCDGKCIAGGIGDGSIQVWNL 328 (616)
Q Consensus 277 iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~g~~dg~I~iwd~ 328 (616)
+|++...+....+..+.........+.++.--...+.|++. +..|++.|+
T Consensus 255 ~ysip~f~~~~tI~l~~ii~~~~~~~vSl~~~s~nRvLLs~--~nkIyLld~ 304 (670)
T PF10395_consen 255 SYSIPNFQIQKTISLPSIIDKESDDLVSLKPPSPNRVLLSV--NNKIYLLDL 304 (670)
T ss_pred EEEcCCceEEEEEEechhhccccccceEeecCCCCeEEEEc--CCEEEEEee
No 464
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=88.10 E-value=31 Score=34.66 Aligned_cols=63 Identities=8% Similarity=0.006 Sum_probs=32.1
Q ss_pred CEEEEEeCC-----CCEEEEECCCccccceEEeeeccCCCCccEEEEEECCCCCeEEEEeCCC----cEEEEeCCCC
Q 048012 264 ETILTSSED-----GSLRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWDCDGKCIAGGIGDG----SIQVWNLKPG 331 (616)
Q Consensus 264 ~~l~s~s~D-----g~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~g~~dg----~I~iwd~~~~ 331 (616)
.+++.|+.. ..+..||+.+.+-. ....... ..+....++ ..++++.+.|+.++ .+.+||..+.
T Consensus 125 ~iYv~GG~~~~~~~~~v~~yd~~~~~W~--~~~~~p~-~~r~~~~~~--~~~~~iYv~GG~~~~~~~~~~~yd~~~~ 196 (323)
T TIGR03548 125 TLYVGGGNRNGKPSNKSYLFNLETQEWF--ELPDFPG-EPRVQPVCV--KLQNELYVFGGGSNIAYTDGYKYSPKKN 196 (323)
T ss_pred EEEEEeCcCCCccCceEEEEcCCCCCee--ECCCCCC-CCCCcceEE--EECCEEEEEcCCCCccccceEEEecCCC
Confidence 466666642 35778888754321 1111110 111111222 23567778887664 3568888765
No 465
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=88.10 E-value=2.4 Score=39.92 Aligned_cols=72 Identities=13% Similarity=0.154 Sum_probs=50.2
Q ss_pred ECCCCCEEEEEEcCCcEEEEeCCCCcccccc--ceecCC-------CCCCceEEEEecCCCCeEEEEeCCCeEEEEECCC
Q 048012 157 VDHSGSRVLSGSYDYTVRMYDFQGMNSRLQS--FRQLEP-------SEGHQVRNLSWSPTSDRFLCVTGSAQAKIYDRDG 227 (616)
Q Consensus 157 ~sp~g~~lasgs~Dg~i~iwd~~~~~~~~~~--~~~~~~-------~~~~~v~~l~~sp~g~~l~~~s~d~~v~vwd~~~ 227 (616)
+...+.+|++-..+|.+++||+..+...... +..+.. .....|..+.++.+|.-|++-+ +|..+.|+.+-
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~L 96 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPDL 96 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEecccc
Confidence 4457889999999999999999876543332 111111 2445689999998887766554 57889998775
Q ss_pred Ce
Q 048012 228 LT 229 (616)
Q Consensus 228 ~~ 229 (616)
..
T Consensus 97 ~~ 98 (219)
T PF07569_consen 97 GC 98 (219)
T ss_pred ce
Confidence 44
No 466
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=87.73 E-value=14 Score=35.55 Aligned_cols=109 Identities=23% Similarity=0.299 Sum_probs=70.1
Q ss_pred eEEEEEcCCCCeEEEEecCC--cEEEEeCCCCCCcceEecCCCCCCcceeEEECCCCCEEEEeeccccccCCCceEEEEe
Q 048012 348 ITALKFSSDGRILLSRSFDG--SLKVWDLRKMKEPLKVFEDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYD 425 (616)
Q Consensus 348 V~~l~~spdg~~l~s~s~Dg--~v~lwd~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd 425 (616)
...+.|..+|.++-+.+.-| .|+.+|+.+++. .... .++....--.++...|.-+.+|= ..+...+||
T Consensus 47 TQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~-~~~~-~l~~~~FgEGit~~~d~l~qLTW--------k~~~~f~yd 116 (264)
T PF05096_consen 47 TQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKV-LQSV-PLPPRYFGEGITILGDKLYQLTW--------KEGTGFVYD 116 (264)
T ss_dssp EEEEEEEETTEEEEEECSTTEEEEEEEETTTSSE-EEEE-E-TTT--EEEEEEETTEEEEEES--------SSSEEEEEE
T ss_pred CccEEecCCCEEEEeCCCCCcEEEEEEECCCCcE-EEEE-ECCccccceeEEEECCEEEEEEe--------cCCeEEEEc
Confidence 56788878888888888766 699999997643 2222 23333333445555443333333 689999999
Q ss_pred CCCCceEEEEecCCCCCeEEEEEcCCCCcEEEEeccCCCCceEEEeccc
Q 048012 426 REKLELVSRVGISPACSVVQCAWHPKLNQIFATAGDKSQGGTHILYDPR 474 (616)
Q Consensus 426 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~~~~~~~v~~~~ 474 (616)
..+.+.+.++.....+ +.++ .++..|+.+.+ ...+.++++.
T Consensus 117 ~~tl~~~~~~~y~~EG--WGLt--~dg~~Li~SDG----S~~L~~~dP~ 157 (264)
T PF05096_consen 117 PNTLKKIGTFPYPGEG--WGLT--SDGKRLIMSDG----SSRLYFLDPE 157 (264)
T ss_dssp TTTTEEEEEEE-SSS----EEE--ECSSCEEEE-S----SSEEEEE-TT
T ss_pred cccceEEEEEecCCcc--eEEE--cCCCEEEEECC----ccceEEECCc
Confidence 9999999999876444 5555 45667777766 5678888863
No 467
>PRK05560 DNA gyrase subunit A; Validated
Probab=87.63 E-value=59 Score=37.33 Aligned_cols=218 Identities=10% Similarity=0.006 Sum_probs=107.7
Q ss_pred EECCCCCEEEEEEcCCcEEEEeCCCCccc---cccceecCCCCCCceEEEEecCCCCeEEEEeCCCeEEEEECCCCeeee
Q 048012 156 AVDHSGSRVLSGSYDYTVRMYDFQGMNSR---LQSFRQLEPSEGHQVRNLSWSPTSDRFLCVTGSAQAKIYDRDGLTLGE 232 (616)
Q Consensus 156 ~~sp~g~~lasgs~Dg~i~iwd~~~~~~~---~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~s~d~~v~vwd~~~~~~~~ 232 (616)
.+-++...++.-+.+|.|+.-.+...... ...........+..+..+......+.|+..+..|.+............
T Consensus 493 dlI~~E~v~vllS~~GyIKri~~~~~~~~~~~~~g~~~~klKe~D~l~~~~~~~t~d~LllfTs~Grv~~l~v~~iP~~~ 572 (805)
T PRK05560 493 DLIPEEDVVVTLTHGGYIKRTPLDEYRAQRRGGKGVSGAKTKEDDFVEHLFVASTHDTLLFFTNRGRVYRLKVYEIPEAS 572 (805)
T ss_pred hccCCCCEEEEEeCCCEEEEcchhhhhhhcccCCCccccccCCCCeeEEEEEecCCCeEEEEecCCeEEEEEhhhCcCCC
Confidence 33456678888899999988765432110 001111111133445555556667778888888877776544211111
Q ss_pred E-eeCceeEeecccCCCcccceEEEEEcCC-CCCEEEEEeCCCCEEEEECCCccccceE-EeeeccCCCCccEEEEEECC
Q 048012 233 F-VKGDMYIRDLKNTKGHICGLTCGEWHPK-TKETILTSSEDGSLRIWDVNEFKSQKQV-IKPKLARPGRVAVTTCAWDC 309 (616)
Q Consensus 233 ~-~~~~~~~~~~~~~~~h~~~v~~~~~~p~-~~~~l~s~s~Dg~v~iwd~~~~~~~~~~-~~~~~~~~~~~~v~~~~~sp 309 (616)
. ..|. .+..+..+.....-|.++.+... ....++..+.+|.++--.+........- ........+. .+..+....
T Consensus 573 ~~~~G~-~i~~ll~L~~~E~Iv~~i~~~~~~~e~~lvlvTk~GyiKRi~l~~~~~~~r~G~~~ikLke~D-~lv~v~~~~ 650 (805)
T PRK05560 573 RTARGR-PIVNLLPLEPGEKITAILPVREFDDDKYLFFATKNGTVKKTSLSEFSNIRSNGIIAINLDEGD-ELIGVRLTD 650 (805)
T ss_pred cCCCCe-EHHHhcCCCCCceEEEEEeccCCCCCCEEEEEeCCCEEEEEEhHHhhhcccCCceeeccCCCC-EEEEEEEeC
Confidence 0 0111 11111223333334555555421 2357889999999988776543221110 0000001122 343333334
Q ss_pred CCCeEEEEeCCCcEEEEeCCCC----CC-CCCceeeecCCCCCeEEEEEcCCCCeEEEEecCCcEEEEeCC
Q 048012 310 DGKCIAGGIGDGSIQVWNLKPG----WG-SRPDIHVEKGHSDDITALKFSSDGRILLSRSFDGSLKVWDLR 375 (616)
Q Consensus 310 ~g~~l~~g~~dg~I~iwd~~~~----~~-~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~v~lwd~~ 375 (616)
....|+..+..|.+..+.+..- .. .......+.....-+..+.+.++..+++..+..|.++...+.
T Consensus 651 ~~d~lll~T~~Gr~~r~~~~eIp~~gr~~~Gv~~i~L~~~E~Vv~~~~v~~~~~~il~vTk~G~iKr~~l~ 721 (805)
T PRK05560 651 GDDDILLATKNGKAIRFPESDVRPMGRTARGVRGIKLREGDEVVSMDVVREDSQEILTVTENGYGKRTPVS 721 (805)
T ss_pred CCCEEEEEECCCcEEEEEhhhcCccCcccCCcccccCCCCCEEEEEEEEcCCCcEEEEEEeCCeEEEEEHH
Confidence 4556777777888777765321 00 001111222212223344444444478888888988887654
No 468
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=86.81 E-value=40 Score=34.51 Aligned_cols=212 Identities=15% Similarity=0.097 Sum_probs=107.3
Q ss_pred CCCeEEEEeCCCeEEEEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCC--EEEEEeCC---CCEEEEECC
Q 048012 207 TSDRFLCVTGSAQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKE--TILTSSED---GSLRIWDVN 281 (616)
Q Consensus 207 ~g~~l~~~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~--~l~s~s~D---g~v~iwd~~ 281 (616)
...+++.....+-+.+||+++..+..+..+.....++ ...+.+. ++. ++++...+ .+|++|-+.
T Consensus 67 ~kSlIigTdK~~GL~VYdL~Gk~lq~~~~Gr~NNVDv---------rygf~l~--g~~vDlavas~R~~g~n~l~~f~id 135 (381)
T PF02333_consen 67 AKSLIIGTDKKGGLYVYDLDGKELQSLPVGRPNNVDV---------RYGFPLN--GKTVDLAVASDRSDGRNSLRLFRID 135 (381)
T ss_dssp GG-EEEEEETTTEEEEEETTS-EEEEE-SS-EEEEEE---------EEEEEET--TEEEEEEEEEE-CCCT-EEEEEEEE
T ss_pred ccceEEEEeCCCCEEEEcCCCcEEEeecCCCcceeee---------ecceecC--CceEEEEEEecCcCCCCeEEEEEec
Confidence 4456676777889999999999886653332221111 1222332 222 23333332 469999875
Q ss_pred Ccc-ccceEEeeec-cCCCCccEEEEEE--CC-CCC-eEEEEeCCCcEEEEeCCCCCC---CCCceeeecCCCCCeEEEE
Q 048012 282 EFK-SQKQVIKPKL-ARPGRVAVTTCAW--DC-DGK-CIAGGIGDGSIQVWNLKPGWG---SRPDIHVEKGHSDDITALK 352 (616)
Q Consensus 282 ~~~-~~~~~~~~~~-~~~~~~~v~~~~~--sp-~g~-~l~~g~~dg~I~iwd~~~~~~---~~~~~~~~~~h~~~V~~l~ 352 (616)
... ....+..... .......+..+|+ ++ +|. ++++...+|.+..|-+..... ....++.+.. .+.+..|.
T Consensus 136 ~~~g~L~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~-~sQ~EGCV 214 (381)
T PF02333_consen 136 PDTGELTDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKV-GSQPEGCV 214 (381)
T ss_dssp TTTTEEEE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE--SS-EEEEE
T ss_pred CCCCcceEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecC-CCcceEEE
Confidence 321 1111110000 0011113555554 44 454 566778899998887753210 1123444443 34688888
Q ss_pred EcCCCCeEEEEecCCcEEEEeCCCCC--CcceE--ecCCCCCCcceeEEEC--CCC-CEEEEeeccccccCCCceEEEEe
Q 048012 353 FSSDGRILLSRSFDGSLKVWDLRKMK--EPLKV--FEDLPNNYAQTNVAFS--PDE-QLFLTGTSVERESTTGGLLCFYD 425 (616)
Q Consensus 353 ~spdg~~l~s~s~Dg~v~lwd~~~~~--~~~~~--~~~~~~~~~v~~v~fs--pdg-~~l~~gs~~~~~~~~dg~i~iwd 425 (616)
......+|+.+-.+--|.-|+..-.. ....+ .....-...|-.|++- .++ .||++.+. .++...||+
T Consensus 215 VDDe~g~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQ------G~~sf~Vy~ 288 (381)
T PF02333_consen 215 VDDETGRLYVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQ------GDNSFAVYD 288 (381)
T ss_dssp EETTTTEEEEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEG------GGTEEEEEE
T ss_pred EecccCCEEEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcC------CCCeEEEEe
Confidence 88888899999988888888776322 11111 1111122346666663 344 36666663 677899999
Q ss_pred CCCC-ceEEEEe
Q 048012 426 REKL-ELVSRVG 436 (616)
Q Consensus 426 ~~~~-~~~~~~~ 436 (616)
.... ..+..+.
T Consensus 289 r~~~~~~~g~f~ 300 (381)
T PF02333_consen 289 REGPNAYVGSFR 300 (381)
T ss_dssp SSTT--EEEEEE
T ss_pred cCCCCcccceEE
Confidence 8753 4444443
No 469
>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2. Unpublished observations.
Probab=86.65 E-value=36 Score=33.87 Aligned_cols=255 Identities=13% Similarity=0.092 Sum_probs=116.9
Q ss_pred CCCEEEEEEcCCcEEEEeCCCCccccccceecCCCCCCceEEEEecCCCCeEEEEeCC-CeEEEEECCCCeeeeEeeC--
Q 048012 160 SGSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSDRFLCVTGS-AQAKIYDRDGLTLGEFVKG-- 236 (616)
Q Consensus 160 ~g~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~s~d-~~v~vwd~~~~~~~~~~~~-- 236 (616)
++++|+.|..+|...+. +.... ..+..+ .....|.++...+.-+.|++.++. ..++++++...........
T Consensus 12 ~~~~lL~GTe~Gly~~~-~~~~~---~~~~kl--~~~~~v~q~~v~~~~~lLi~Lsgk~~~L~~~~L~~L~~~~~~~~~~ 85 (302)
T smart00036 12 DGKWLLVGTEEGLYVLN-ISDQP---GTLEKL--IGRRSVTQIWVLEENNVLLMISGKKPQLYSHPLSALVEKKEALGSA 85 (302)
T ss_pred CCcEEEEEeCCceEEEE-cccCC---CCeEEe--cCcCceEEEEEEhhhCEEEEEeCCcceEEEEEHHHhhhhhhccCCc
Confidence 33689999999855554 54321 111111 234469999999888877776654 4599999853321000000
Q ss_pred ceeEe-ecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEEEECCCccccceEEeee--ccCCCCccEEEEEECCC--C
Q 048012 237 DMYIR-DLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKPK--LARPGRVAVTTCAWDCD--G 311 (616)
Q Consensus 237 ~~~~~-~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~--~~~~~~~~v~~~~~sp~--g 311 (616)
....+ .......|+.+..-....-.....++++....+|.++............... .......++..+..+++ .
T Consensus 86 ~~~~~~~~~~~~~~tkGc~~~~v~~~~~~~~l~~A~~~~i~l~~~~~~~~~f~~~k~~~~~~~~~~~~~~~~~~~~~~~~ 165 (302)
T smart00036 86 RLVIRKNVLTKIPDTKGCHLCAVVNGKRSLFLCVALQSSVVLLQWYNPLKKFKLFKSKFLFPLISPVPVFVELVSSSFER 165 (302)
T ss_pred cccccccceEeCCcCCceEEEEEEcCCCcEEEEEEcCCeEEEEEccChhhhhhhhcccccccCCCCccceEeeecccccc
Confidence 00000 0001123333333333332222345555666777776543321111111100 00011123333333333 4
Q ss_pred CeEEEEeCCCcEEEEeCCC--CCCCCCcee-eecCCC-CCeEEEEEcCCCCeEEEEecCCcEEEEeCCCCCC-cceEecC
Q 048012 312 KCIAGGIGDGSIQVWNLKP--GWGSRPDIH-VEKGHS-DDITALKFSSDGRILLSRSFDGSLKVWDLRKMKE-PLKVFED 386 (616)
Q Consensus 312 ~~l~~g~~dg~I~iwd~~~--~~~~~~~~~-~~~~h~-~~V~~l~~spdg~~l~s~s~Dg~v~lwd~~~~~~-~~~~~~~ 386 (616)
..|..|+..+-..++++.. ......... ...... .++..+.. +++.+|++- |....+-|...... ....+.
T Consensus 166 ~~lcvG~~~~~~~~~~~~~~~~~~~d~sl~~~~~~~~~~p~~i~~l-~~~e~Llc~--~~~~v~Vn~~G~~~~r~~~l~- 241 (302)
T smart00036 166 PGICIGSDKGGGDVVQFHESLVSKEDLSLPFLSEETSLKPISVVQV-PRDEFLLCY--DEFGVFVNLYGKRRSRNPILH- 241 (302)
T ss_pred eEEEEEEcCCCCeEEEEeecccccccccccccccccccCceEEEEE-CCCeEEEEE--CcEEEEEeCCCCccccceEEE-
Confidence 5677777643344444432 100000000 001111 34444444 344455433 44555666552111 111111
Q ss_pred CCCCCcceeEEECCCCCEEEEeeccccccCCCceEEEEeCCCCceEEEEe
Q 048012 387 LPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREKLELVSRVG 436 (616)
Q Consensus 387 ~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~~~~~~~~~ 436 (616)
-...+.++++. ..||++-. ...|.|+++.++++++.+.
T Consensus 242 --w~~~p~~~~~~--~pyll~~~--------~~~ievr~l~~~~l~q~i~ 279 (302)
T smart00036 242 --WEFMPESFAYH--SPYLLAFH--------DNGIEIRSIKTGELLQELA 279 (302)
T ss_pred --cCCcccEEEEE--CCEEEEEc--------CCcEEEEECCCCceEEEEe
Confidence 12235667776 36666654 4569999999999998885
No 470
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=86.50 E-value=3.9 Score=26.49 Aligned_cols=32 Identities=13% Similarity=0.271 Sum_probs=26.4
Q ss_pred CCCCEEEEeeccccccCCCceEEEEeCCCCceEEEEec
Q 048012 400 PDEQLFLTGTSVERESTTGGLLCFYDREKLELVSRVGI 437 (616)
Q Consensus 400 pdg~~l~~gs~~~~~~~~dg~i~iwd~~~~~~~~~~~~ 437 (616)
|++++|+++.. .++.|.++|..+++.+..+..
T Consensus 1 pd~~~lyv~~~------~~~~v~~id~~~~~~~~~i~v 32 (42)
T TIGR02276 1 PDGTKLYVTNS------GSNTVSVIDTATNKVIATIPV 32 (42)
T ss_pred CCCCEEEEEeC------CCCEEEEEECCCCeEEEEEEC
Confidence 57887777663 688999999999999888876
No 471
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=86.16 E-value=5 Score=36.17 Aligned_cols=30 Identities=17% Similarity=0.336 Sum_probs=24.7
Q ss_pred CeEEEEEcCCC------CeEEEEecCCcEEEEeCCC
Q 048012 347 DITALKFSSDG------RILLSRSFDGSLKVWDLRK 376 (616)
Q Consensus 347 ~V~~l~~spdg------~~l~s~s~Dg~v~lwd~~~ 376 (616)
.|.+++|||-| -+|++...++.|.||....
T Consensus 87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 68899999944 3788889999999997653
No 472
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=85.63 E-value=12 Score=39.03 Aligned_cols=73 Identities=18% Similarity=0.222 Sum_probs=41.7
Q ss_pred CcceeEEECCCCCEEEEeeccccccCCCceEEEEeC---------CCCceE---EEE-------ecCCCCCeEEEEEcCC
Q 048012 391 YAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDR---------EKLELV---SRV-------GISPACSVVQCAWHPK 451 (616)
Q Consensus 391 ~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~---------~~~~~~---~~~-------~~~~~~~v~~~~~~p~ 451 (616)
..|..+..++.|..++..+ .+|.+.++=. +.++.+ +++ ..+..-.+..++|||+
T Consensus 104 feV~~vl~s~~GS~VaL~G-------~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~ 176 (741)
T KOG4460|consen 104 FEVYQVLLSPTGSHVALIG-------IKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPS 176 (741)
T ss_pred EEEEEEEecCCCceEEEec-------CCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCC
Confidence 4577888999999998887 6776544432 222211 111 1112234566677776
Q ss_pred C---CcEEEEeccCCCCceEEEeccc
Q 048012 452 L---NQIFATAGDKSQGGTHILYDPR 474 (616)
Q Consensus 452 ~---~~l~~~~~d~~~~~~~~v~~~~ 474 (616)
. ..|+.-.+ +.++++|++.
T Consensus 177 S~~D~hL~iL~s----dnviRiy~lS 198 (741)
T KOG4460|consen 177 SILDPHLVLLTS----DNVIRIYSLS 198 (741)
T ss_pred ccCCceEEEEec----CcEEEEEecC
Confidence 4 34444444 6677777765
No 473
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=84.91 E-value=28 Score=32.23 Aligned_cols=109 Identities=13% Similarity=0.160 Sum_probs=65.3
Q ss_pred CeEEEEecCCcEEEEeCCCC-CCcceEecCCCCCCcceeEEECCCCCEEEEeeccccccCCCceEEEEe---CC--CCc-
Q 048012 358 RILLSRSFDGSLKVWDLRKM-KEPLKVFEDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYD---RE--KLE- 430 (616)
Q Consensus 358 ~~l~s~s~Dg~v~lwd~~~~-~~~~~~~~~~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd---~~--~~~- 430 (616)
..|+.+...+.|.+|++... ..++..+. .-+.|..+.++..|.||++--...... ....+++|= .. ...
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~---Tv~~V~~l~y~~~GDYlvTlE~k~~~~-~~~fvR~Y~NWr~~~~~~~~ 104 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFS---TVGRVLQLVYSEAGDYLVTLEEKNKRS-PVDFVRAYFNWRSQKEENSP 104 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEc---chhheeEEEeccccceEEEEEeecCCc-cceEEEEEEEhhhhcccCCc
Confidence 34444455778999999832 23344443 335689999999999999975311100 112566652 11 111
Q ss_pred --------------------eEEEEecCCCCCeEEEEEcCCCCcEEEEeccCCCCceEEEecccC
Q 048012 431 --------------------LVSRVGISPACSVVQCAWHPKLNQIFATAGDKSQGGTHILYDPRL 475 (616)
Q Consensus 431 --------------------~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~~~~~~~v~~~~~ 475 (616)
.+..+.++-..++.+++..|-...|++|+ +..+.+|.+..
T Consensus 105 v~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~-----~~~l~lf~l~~ 164 (215)
T PF14761_consen 105 VRVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGC-----GNKLVLFTLKY 164 (215)
T ss_pred EEEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEc-----CCEEEEEEEEE
Confidence 12223333445677888888877888888 45788887653
No 474
>KOG2109 consensus WD40 repeat protein [General function prediction only]
Probab=84.76 E-value=3.5 Score=44.01 Aligned_cols=79 Identities=18% Similarity=0.174 Sum_probs=48.2
Q ss_pred ceEEecCCcccEEEEEECCCCCEEEEEEcCCc-EEEEeCCCCccccccceecCC-----CCCCceEEEEecCCCCeEEEE
Q 048012 141 NEIVLKGHTKIVSALAVDHSGSRVLSGSYDYT-VRMYDFQGMNSRLQSFRQLEP-----SEGHQVRNLSWSPTSDRFLCV 214 (616)
Q Consensus 141 ~~~~l~~H~~~V~~v~~sp~g~~lasgs~Dg~-i~iwd~~~~~~~~~~~~~~~~-----~~~~~v~~l~~sp~g~~l~~~ 214 (616)
....|+.|+.+|.+++|.+.|.+|++++..|. |.++.+............... .....|..++|+...+++..+
T Consensus 307 ~i~QfkAhkspiSaLcfdqsgsllViasi~g~nVnvfRimet~~t~~~~~qs~~~s~ra~t~aviqdicfs~~s~~r~~g 386 (788)
T KOG2109|consen 307 DIRQFKAHKSPISALCFDQSGSLLVIASITGRNVNVFRIMETVCTVNVSDQSLVVSPRANTAAVIQDICFSEVSTIRTAG 386 (788)
T ss_pred hhhheeeecCcccccccccCceEEEEEeeccceeeeEEeccccccccccccccccchhcchHHHHHHHhhhhhcceEeec
Confidence 34468899999999999999999999987763 555543321111111111110 011235567888887777777
Q ss_pred eCCCe
Q 048012 215 TGSAQ 219 (616)
Q Consensus 215 s~d~~ 219 (616)
+.+|.
T Consensus 387 sc~Ge 391 (788)
T KOG2109|consen 387 SCEGE 391 (788)
T ss_pred ccCCC
Confidence 76653
No 475
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=84.66 E-value=43 Score=33.01 Aligned_cols=141 Identities=17% Similarity=0.237 Sum_probs=76.8
Q ss_pred CEEEEECCCccccceEEeeeccCCCCccEEEEEECCCC-----CeEEEE-eCCCcEEEEeCCCCCCCCCceeeecC----
Q 048012 274 SLRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWDCDG-----KCIAGG-IGDGSIQVWNLKPGWGSRPDIHVEKG---- 343 (616)
Q Consensus 274 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g-----~~l~~g-~~dg~I~iwd~~~~~~~~~~~~~~~~---- 343 (616)
.|.+||+.+.+..+.+..+.........+..+.+.... .+++.. ...+-|.+||+.++. ....+..
T Consensus 35 KLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~----s~Rv~~~~~~~ 110 (287)
T PF03022_consen 35 KLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGK----SWRVLHNSFSP 110 (287)
T ss_dssp EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTE----EEEEETCGCTT
T ss_pred EEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCc----EEEEecCCcce
Confidence 46678888877666665554433345578888776622 233333 344679999998862 1111111
Q ss_pred ---------------CCCCeEEEEEcC---CCCeEEEEecCCcEEEEeCC-----CCCC--------cceEecCCCCCCc
Q 048012 344 ---------------HSDDITALKFSS---DGRILLSRSFDGSLKVWDLR-----KMKE--------PLKVFEDLPNNYA 392 (616)
Q Consensus 344 ---------------h~~~V~~l~~sp---dg~~l~s~s~Dg~v~lwd~~-----~~~~--------~~~~~~~~~~~~~ 392 (616)
....+..++.+| ++++|+-....+. ++|-+. +... .++.+... ...
T Consensus 111 ~p~~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss~-~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k--~~~ 187 (287)
T PF03022_consen 111 DPDAGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSSR-KLYRVPTSVLRDPSLSDAQALASQVQDLGDK--GSQ 187 (287)
T ss_dssp S-SSEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT-S-EEEEEEHHHHCSTT--HHH-HHHT-EEEEE-----S
T ss_pred eccccceeccCceEecCCCccccccCCCCCCccEEEEEeCCCC-cEEEEEHHHhhCccccccccccccceecccc--CCC
Confidence 112366777766 6677776665442 333332 1111 11122111 123
Q ss_pred ceeEEECCCCCEEEEeeccccccCCCceEEEEeCCC
Q 048012 393 QTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREK 428 (616)
Q Consensus 393 v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~ 428 (616)
...++++++|.++++-- ..+.|..|+..+
T Consensus 188 s~g~~~D~~G~ly~~~~-------~~~aI~~w~~~~ 216 (287)
T PF03022_consen 188 SDGMAIDPNGNLYFTDV-------EQNAIGCWDPDG 216 (287)
T ss_dssp ECEEEEETTTEEEEEEC-------CCTEEEEEETTT
T ss_pred CceEEECCCCcEEEecC-------CCCeEEEEeCCC
Confidence 56688888888888777 788899999775
No 476
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=84.49 E-value=40 Score=32.46 Aligned_cols=204 Identities=13% Similarity=0.078 Sum_probs=117.3
Q ss_pred CCCceEEEEecCCCCeEEEEeCCCeEEEEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCC
Q 048012 195 EGHQVRNLSWSPTSDRFLCVTGSAQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGS 274 (616)
Q Consensus 195 ~~~~v~~l~~sp~g~~l~~~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~ 274 (616)
.+..-..|+-.++|..-+++...+.|--.|-.++++.... .+.-..-..+..-|++...|.-.+. -
T Consensus 60 ~G~ap~dvapapdG~VWft~qg~gaiGhLdP~tGev~~yp------------Lg~Ga~Phgiv~gpdg~~Witd~~~--a 125 (353)
T COG4257 60 NGSAPFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYP------------LGSGASPHGIVVGPDGSAWITDTGL--A 125 (353)
T ss_pred CCCCccccccCCCCceEEecCccccceecCCCCCceEEEe------------cCCCCCCceEEECCCCCeeEecCcc--e
Confidence 3445677888899988888888888777777776654331 1222333455566766433332222 3
Q ss_pred EEEEECCCccccceEEeeeccCCCCccEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCCCCCceeeecCCC-CCeEEEEE
Q 048012 275 LRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWDCDGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHS-DDITALKF 353 (616)
Q Consensus 275 v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~h~-~~V~~l~~ 353 (616)
|.-.|-++.. ...+..+. ...........|.+.|++-+++.. |.---.|-. +..+.++..-. ..-+.|+.
T Consensus 126 I~R~dpkt~e-vt~f~lp~--~~a~~nlet~vfD~~G~lWFt~q~-G~yGrLdPa-----~~~i~vfpaPqG~gpyGi~a 196 (353)
T COG4257 126 IGRLDPKTLE-VTRFPLPL--EHADANLETAVFDPWGNLWFTGQI-GAYGRLDPA-----RNVISVFPAPQGGGPYGICA 196 (353)
T ss_pred eEEecCcccc-eEEeeccc--ccCCCcccceeeCCCccEEEeecc-ccceecCcc-----cCceeeeccCCCCCCcceEE
Confidence 4444544322 12222221 122235778889999999888762 221111221 12333333322 34678899
Q ss_pred cCCCCeEEEEecCCcEEEEeCCCCCCcceEecCCCC-CCcceeEEECCCCCEEEEeeccccccCCCceEEEEeCCCCc
Q 048012 354 SSDGRILLSRSFDGSLKVWDLRKMKEPLKVFEDLPN-NYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREKLE 430 (616)
Q Consensus 354 spdg~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~-~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~~~ 430 (616)
.|||.+-++.-.+..|-..|...... ..+..... ....+.+--+|.|+.-++-. ..+.++.||..+..
T Consensus 197 tpdGsvwyaslagnaiaridp~~~~a--ev~p~P~~~~~gsRriwsdpig~~wittw-------g~g~l~rfdPs~~s 265 (353)
T COG4257 197 TPDGSVWYASLAGNAIARIDPFAGHA--EVVPQPNALKAGSRRIWSDPIGRAWITTW-------GTGSLHRFDPSVTS 265 (353)
T ss_pred CCCCcEEEEeccccceEEcccccCCc--ceecCCCcccccccccccCccCcEEEecc-------CCceeeEeCccccc
Confidence 99999988877888888888765421 22211111 12245566677888888765 67888888865543
No 477
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=84.43 E-value=11 Score=39.35 Aligned_cols=28 Identities=18% Similarity=-0.016 Sum_probs=23.6
Q ss_pred cccEEEEEECCCCCEEEEEEcCCcEEEE
Q 048012 149 TKIVSALAVDHSGSRVLSGSYDYTVRMY 176 (616)
Q Consensus 149 ~~~V~~v~~sp~g~~lasgs~Dg~i~iw 176 (616)
+-.|..|..++.|..++-.|.+|.+.++
T Consensus 103 ~feV~~vl~s~~GS~VaL~G~~Gi~vMe 130 (741)
T KOG4460|consen 103 LFEVYQVLLSPTGSHVALIGIKGLMVME 130 (741)
T ss_pred eEEEEEEEecCCCceEEEecCCeeEEEE
Confidence 4568899999999999999999976554
No 478
>PLN02153 epithiospecifier protein
Probab=84.28 E-value=50 Score=33.45 Aligned_cols=20 Identities=10% Similarity=0.164 Sum_probs=13.2
Q ss_pred CEEEEEeCC-----CCEEEEECCCc
Q 048012 264 ETILTSSED-----GSLRIWDVNEF 283 (616)
Q Consensus 264 ~~l~s~s~D-----g~v~iwd~~~~ 283 (616)
.+++.|+.+ ..|.+||+.+.
T Consensus 87 ~iyv~GG~~~~~~~~~v~~yd~~t~ 111 (341)
T PLN02153 87 KLYIFGGRDEKREFSDFYSYDTVKN 111 (341)
T ss_pred EEEEECCCCCCCccCcEEEEECCCC
Confidence 577777653 24778888754
No 479
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=84.28 E-value=56 Score=34.04 Aligned_cols=158 Identities=15% Similarity=0.123 Sum_probs=83.3
Q ss_pred CCCeEEEEeCCCeEEEEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEEEECCCcccc
Q 048012 207 TSDRFLCVTGSAQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQ 286 (616)
Q Consensus 207 ~g~~l~~~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~ 286 (616)
..+.|++|+..|.++||+........ .+. .--..+....-.|.+..|.+......++.-.-..+.||.+......
T Consensus 36 ~~d~IivGS~~G~LrIy~P~~~~~~~---~~l--llE~~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~ 110 (418)
T PF14727_consen 36 GSDKIIVGSYSGILRIYDPSGNEFQP---EDL--LLETQLKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGT 110 (418)
T ss_pred CccEEEEeccccEEEEEccCCCCCCC---ccE--EEEEecCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCC
Confidence 34689999999999999985433110 000 0011122222233444443332233333345667777777321111
Q ss_pred ------ceEEeeeccCCCCccEEEEEECC----C-CCeEEEEeCCCcEEEEeCCCCCCCCCceeeecCCCCCeEEEEEcC
Q 048012 287 ------KQVIKPKLARPGRVAVTTCAWDC----D-GKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHSDDITALKFSS 355 (616)
Q Consensus 287 ------~~~~~~~~~~~~~~~v~~~~~sp----~-g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp 355 (616)
..+.......-.+ ....+++-+ . -.+|.+=+.||.+.+|+-+.- ....+...---...|.|.+
T Consensus 111 ~~~g~~~~L~~~yeh~l~~-~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~-----~f~~~lp~~llPgPl~Y~~ 184 (418)
T PF14727_consen 111 VEHGNQYQLELIYEHSLQR-TAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESF-----AFSRFLPDFLLPGPLCYCP 184 (418)
T ss_pred cccCcEEEEEEEEEEeccc-ceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcE-----EEEEEcCCCCCCcCeEEee
Confidence 1111111000011 223333322 2 357788889999999997652 2222222222234578888
Q ss_pred CCCeEEEEecCCcEEEEeCC
Q 048012 356 DGRILLSRSFDGSLKVWDLR 375 (616)
Q Consensus 356 dg~~l~s~s~Dg~v~lwd~~ 375 (616)
.-..|++++.+..|..|...
T Consensus 185 ~tDsfvt~sss~~l~~Yky~ 204 (418)
T PF14727_consen 185 RTDSFVTASSSWTLECYKYQ 204 (418)
T ss_pred cCCEEEEecCceeEEEecHH
Confidence 88899999999899888753
No 480
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=84.18 E-value=7.9 Score=39.54 Aligned_cols=166 Identities=17% Similarity=0.151 Sum_probs=94.0
Q ss_pred CCCceEEEEecCCCCeEEEEeCCCeEEEEECCCCeeeeEeeCceeEeecccC-CC-cccceE-EEEEcCCCCCEEEEEeC
Q 048012 195 EGHQVRNLSWSPTSDRFLCVTGSAQAKIYDRDGLTLGEFVKGDMYIRDLKNT-KG-HICGLT-CGEWHPKTKETILTSSE 271 (616)
Q Consensus 195 ~~~~v~~l~~sp~g~~l~~~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~-~~-h~~~v~-~~~~~p~~~~~l~s~s~ 271 (616)
.-..|..+-..|+|+.|.+-++ .++.|+++....+... .+... .+ ....|+ .+..-. |+.-++.++.
T Consensus 219 ~~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~r--------kl~~dspg~~~~~Vte~l~lL~-Gg~SLLv~~~ 288 (733)
T COG4590 219 PFSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIR--------KLVDDSPGDSRHQVTEQLYLLS-GGFSLLVVHE 288 (733)
T ss_pred CccchHhhEECCCCCEEEEecC-CeEEEEeecccccchh--------hhhhcCCCchHHHHHHHHHHHh-CceeEEEEcC
Confidence 3445788899999999988777 7888999876553211 01000 11 001111 111111 4456788888
Q ss_pred CCCEEEE-ECCCccccceEEeeeccCCCCccEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCCCCCceeeecCCCCCeEE
Q 048012 272 DGSLRIW-DVNEFKSQKQVIKPKLARPGRVAVTTCAWDCDGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHSDDITA 350 (616)
Q Consensus 272 Dg~v~iw-d~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~ 350 (616)
||-|.-| |++.... ..+.......-....+..+.-..+.+-+++-+..|++.++..... +.+...... ..+.-
T Consensus 289 dG~vsQWFdvr~~~~-p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~----~~lL~~~~~-~~~~~ 362 (733)
T COG4590 289 DGLVSQWFDVRRDGQ-PHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSE----KLLLFERAY-QAPQL 362 (733)
T ss_pred CCceeeeeeeecCCC-CcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccC----cceehhhhh-cCcce
Confidence 9988877 4443222 212111111111113333333334456778888999988875542 232222222 35778
Q ss_pred EEEcCCCCeEEEEecCCcEEEEeCCCC
Q 048012 351 LKFSSDGRILLSRSFDGSLKVWDLRKM 377 (616)
Q Consensus 351 l~~spdg~~l~s~s~Dg~v~lwd~~~~ 377 (616)
+++||.+.+|++-. .|.++++.+.+.
T Consensus 363 ~~~Sp~~~~Ll~e~-~gki~~~~l~Nr 388 (733)
T COG4590 363 VAMSPNQAYLLSED-QGKIRLAQLENR 388 (733)
T ss_pred eeeCcccchheeec-CCceEEEEecCC
Confidence 99999999988754 578999988763
No 481
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.01 E-value=47 Score=38.96 Aligned_cols=75 Identities=19% Similarity=0.109 Sum_probs=45.4
Q ss_pred ecCCCCCeEEEEEcCCCCeEEEEecCCcEEEEeCCCCCCcceEecCCCCCCcceeEEECCCCCEEEEeeccccccCCCce
Q 048012 341 EKGHSDDITALKFSSDGRILLSRSFDGSLKVWDLRKMKEPLKVFEDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGL 420 (616)
Q Consensus 341 ~~~h~~~V~~l~~spdg~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~ 420 (616)
+.-|...+.+..+...... +.+..-+.+.+|+.... ..... +.+....++.++..++++. .||.
T Consensus 194 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~-------~~~~~~~~~~~~~~~v~~h-------~Dgs 257 (993)
T KOG1983|consen 194 LSLIEYESLQVLYYSPTKI-LIGFNRGLVVIKDRASK-YVQSA-------YLPNGQLESRDGSHFVSYH-------TDGS 257 (993)
T ss_pred ccccccccceeeeecCCCc-ceeeeeeeeeehhcccc-cchhh-------cccccccCccCCceEEEEE-------ecCC
Confidence 3345555666655544433 33444566777765432 11111 1122222388999999999 8999
Q ss_pred EEEEeCCCCce
Q 048012 421 LCFYDREKLEL 431 (616)
Q Consensus 421 i~iwd~~~~~~ 431 (616)
+.+||...+..
T Consensus 258 ~~fWd~s~g~~ 268 (993)
T KOG1983|consen 258 YAFWDVSSGKL 268 (993)
T ss_pred EEeeecCCCce
Confidence 99999998865
No 482
>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others. It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas [].
Probab=83.43 E-value=60 Score=39.29 Aligned_cols=133 Identities=16% Similarity=0.117 Sum_probs=71.0
Q ss_pred EEeCCCcEEEEeCCCCCCCCCce---ee---------ecCCCCCeEEEEEcCCCCeEEEEecCCcEEEEeCCCCCCcceE
Q 048012 316 GGIGDGSIQVWNLKPGWGSRPDI---HV---------EKGHSDDITALKFSSDGRILLSRSFDGSLKVWDLRKMKEPLKV 383 (616)
Q Consensus 316 ~g~~dg~I~iwd~~~~~~~~~~~---~~---------~~~h~~~V~~l~~spdg~~l~s~s~Dg~v~lwd~~~~~~~~~~ 383 (616)
+|-.||.|+-||-.+......-+ .. +.-..+.|..|.+++....++-+. +..+.+=-.++.-..-..
T Consensus 618 v~L~~G~i~~wD~ttq~W~~~~~kd~~~L~RG~D~~AYVLk~G~vk~l~i~~~~~~~~~g~-~~~~a~~~~r~~~e~G~~ 696 (1774)
T PF11725_consen 618 VGLQDGKIQYWDSTTQCWKDAGVKDIDQLKRGLDGNAYVLKDGKVKRLSINQEHPSIAHGD-NNVFALPQRRNKVELGDA 696 (1774)
T ss_pred eeeccceEeeecCcchhhhhccCcCHHHHhccccCCceEecCCceeeeecccCCCccccCC-CcccccccccCCCCCCcc
Confidence 35568999999976531111111 00 111235677777777555544332 222332222322222333
Q ss_pred ecCCCCCCcceeEEECCCCCEEEEeeccccccCCCceEEEEeCCCCceEEEEecCCCCCeEEEEEcCCCCcEEEEe
Q 048012 384 FEDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREKLELVSRVGISPACSVVQCAWHPKLNQIFATA 459 (616)
Q Consensus 384 ~~~~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~ 459 (616)
+.++. ...|+.++.-.+.+|++.- ..|.|.++. ..+..+..-.-.-.+.|..++.....+..+...
T Consensus 697 l~Gl~-~~~i~a~Avv~~~~fvald--------~qg~lt~h~-k~g~p~~l~~~gl~G~ik~l~lD~~~nL~Alt~ 762 (1774)
T PF11725_consen 697 LEGLE-DRVITAFAVVNDNKFVALD--------DQGDLTAHQ-KPGRPVPLSRPGLSGEIKDLALDEKQNLYALTS 762 (1774)
T ss_pred ccCCC-cCcceeEEEEcCCceEEec--------cCCcccccc-CCCCCccCCCCCCCcchhheeeccccceeEecC
Confidence 44444 4458888887776666654 678888888 655533211111236788899888855544444
No 483
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=83.28 E-value=25 Score=41.13 Aligned_cols=76 Identities=22% Similarity=0.442 Sum_probs=53.9
Q ss_pred ccEEEEEECCCCCeEEEEeCCCcEE--EEeCCCCCCCC----------------Cceeeec-CCCCCeEEEEEcCCCCeE
Q 048012 300 VAVTTCAWDCDGKCIAGGIGDGSIQ--VWNLKPGWGSR----------------PDIHVEK-GHSDDITALKFSSDGRIL 360 (616)
Q Consensus 300 ~~v~~~~~sp~g~~l~~g~~dg~I~--iwd~~~~~~~~----------------~~~~~~~-~h~~~V~~l~~spdg~~l 360 (616)
..|+|+....+|+.+++|- ||.|+ +|....+|-.+ +.+..+. .+..+|..|+.....++|
T Consensus 179 ~~V~~I~~t~nGRIF~~G~-dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~SR~Il 257 (1311)
T KOG1900|consen 179 VSVNCITYTENGRIFFAGR-DGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDNSRNIL 257 (1311)
T ss_pred ceEEEEEeccCCcEEEeec-CCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEecccccee
Confidence 4789999888998887775 55554 23333433111 1111223 567789999999989999
Q ss_pred EEEecCCcEEEEeCCC
Q 048012 361 LSRSFDGSLKVWDLRK 376 (616)
Q Consensus 361 ~s~s~Dg~v~lwd~~~ 376 (616)
.+.+..|+|.+||+..
T Consensus 258 Y~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 258 YVLSEKGTVSAYDIGG 273 (1311)
T ss_pred eeeccCceEEEEEccC
Confidence 9999999999999976
No 484
>PLN02193 nitrile-specifier protein
Probab=83.16 E-value=69 Score=34.20 Aligned_cols=65 Identities=9% Similarity=-0.012 Sum_probs=32.7
Q ss_pred CEEEEEeCCC-----CEEEEECCCccccceEEeeeccCCCCccEEEEEECCCCCeEEEEeCC----CcEEEEeCCCC
Q 048012 264 ETILTSSEDG-----SLRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWDCDGKCIAGGIGD----GSIQVWNLKPG 331 (616)
Q Consensus 264 ~~l~s~s~Dg-----~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~g~~d----g~I~iwd~~~~ 331 (616)
.+++.|+.++ .+..||+.+..-. .+.........+.....+.+ ++++++.|+.+ ..|.+||+.+.
T Consensus 280 ~iYv~GG~~~~~~~~~~~~yd~~t~~W~-~~~~~~~~~~~R~~~~~~~~--~gkiyviGG~~g~~~~dv~~yD~~t~ 353 (470)
T PLN02193 280 NVYVFGGVSATARLKTLDSYNIVDKKWF-HCSTPGDSFSIRGGAGLEVV--QGKVWVVYGFNGCEVDDVHYYDPVQD 353 (470)
T ss_pred EEEEECCCCCCCCcceEEEEECCCCEEE-eCCCCCCCCCCCCCcEEEEE--CCcEEEEECCCCCccCceEEEECCCC
Confidence 5777777543 3667777654321 11100000011111122222 56777777755 45899998875
No 485
>KOG3522 consensus Predicted guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=82.88 E-value=11 Score=41.73 Aligned_cols=155 Identities=15% Similarity=0.148 Sum_probs=86.9
Q ss_pred EEEEEeCCCCEEEEECCCccccceEEeeeccCCCCccEEEEEECCCCCeEEEEeCCCcEEEEeCCCCC-CCCCceeeecC
Q 048012 265 TILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWDCDGKCIAGGIGDGSIQVWNLKPGW-GSRPDIHVEKG 343 (616)
Q Consensus 265 ~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~g~~dg~I~iwd~~~~~-~~~~~~~~~~~ 343 (616)
.+..|+.++.|.|+.-..... +.... .........+.++.+++ ..+..|.-||++-.|--.... ........+..
T Consensus 549 Tic~gtq~ssisissss~~s~-ke~~~-~~~spe~~~v~~l~~ss--~Slgagl~dgt~a~y~rap~gSwd~ep~~~~~~ 624 (925)
T KOG3522|consen 549 TICLGTQTSSISISSSSLDSI-KEVTS-EPPSPEHESVKLLLFSS--GSLGAGLIDGTLAVYGRAPSGSWDGEPNISIPT 624 (925)
T ss_pred cccccCccceeEEeeccCCcc-cceec-cCCCCchhhhhhhhccc--cccccCccCCccccccCCCCCCCCCCCcccccc
Confidence 577888899999987652211 11111 11122233556665554 235556666666655322110 00011112223
Q ss_pred CCCCeEEEEEcCCCCeEEEEecCCcEEEEeCCCCCCcceEecCCCCCCcceeEEECCCCCEEEEeeccccccCCCceEEE
Q 048012 344 HSDDITALKFSSDGRILLSRSFDGSLKVWDLRKMKEPLKVFEDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCF 423 (616)
Q Consensus 344 h~~~V~~l~~spdg~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~i 423 (616)
-..+|.+++|..| ++.++.+|.|.++...+............+...|+++.+.-.+-+++..+ +..+++
T Consensus 625 g~lPvrsla~~ed---~~was~gG~V~vi~~tt~~~~~~leahqee~~~Vthm~~~~~gVwvafas--------G~~~rl 693 (925)
T KOG3522|consen 625 GSLPVRSLAFQED---FVWASEGGCVHVIPSTTFIRSWDLEAHQEEAHSVTHMLYLDNGVWVAFAS--------GDEERL 693 (925)
T ss_pred CCccccchhhhhc---eeeeecCCceEEEechhccccchhHHHHhhcceEEEEEeeCCceEEEEcC--------CCEEEE
Confidence 3457888888654 55677799999999876543333222234455699999998888887765 445666
Q ss_pred EeCCCCceEEE
Q 048012 424 YDREKLELVSR 434 (616)
Q Consensus 424 wd~~~~~~~~~ 434 (616)
++..+..-.+.
T Consensus 694 fhtetl~hlqd 704 (925)
T KOG3522|consen 694 FHTETLWHLQD 704 (925)
T ss_pred ecccccCCccc
Confidence 66665544433
No 486
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=82.87 E-value=50 Score=32.40 Aligned_cols=217 Identities=18% Similarity=0.211 Sum_probs=107.3
Q ss_pred cceEEEEEcCCCCCEEEEEeCCCCEEEEECCC-----ccccceEEeee-ccCCCCccEEEEEECCCCC------------
Q 048012 251 CGLTCGEWHPKTKETILTSSEDGSLRIWDVNE-----FKSQKQVIKPK-LARPGRVAVTTCAWDCDGK------------ 312 (616)
Q Consensus 251 ~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~-----~~~~~~~~~~~-~~~~~~~~v~~~~~sp~g~------------ 312 (616)
..-+.++++|.+ .+.++...-+...+||... ......+..+. .........+.+.|+....
T Consensus 23 ~N~WGia~~p~~-~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a 101 (336)
T TIGR03118 23 RNAWGLSYRPGG-PFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPS 101 (336)
T ss_pred cccceeEecCCC-CEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccce
Confidence 345789999976 5777777788999999861 11111122111 1111233567777765332
Q ss_pred eEEEEeCCCcEEEEeCCCCCCC-CCceeeec-CCCCCe-EEEEEcC--CCCeEEEEe-cCCcEEEEeCCCCCCcce--Ee
Q 048012 313 CIAGGIGDGSIQVWNLKPGWGS-RPDIHVEK-GHSDDI-TALKFSS--DGRILLSRS-FDGSLKVWDLRKMKEPLK--VF 384 (616)
Q Consensus 313 ~l~~g~~dg~I~iwd~~~~~~~-~~~~~~~~-~h~~~V-~~l~~sp--dg~~l~s~s-~Dg~v~lwd~~~~~~~~~--~~ 384 (616)
.++.+++||+|.-|...-+... ...+..+. ...+.| ..+++.. .+.+|+.+. ..++|.+||-. ...+.. .+
T Consensus 102 ~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~-f~~~~~~g~F 180 (336)
T TIGR03118 102 RFLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGS-FRPPPLPGSF 180 (336)
T ss_pred eEEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCc-cccccCCCCc
Confidence 3677889999999986443100 01112222 222334 3455543 355666554 57889999854 221110 01
Q ss_pred cC--CCCCCcceeEEECCCCCEEEEeeccc------cccCCCceEEEEeCCCCceEEEEecCC-CCCeEEEEEcCC----
Q 048012 385 ED--LPNNYAQTNVAFSPDEQLFLTGTSVE------RESTTGGLLCFYDREKLELVSRVGISP-ACSVVQCAWHPK---- 451 (616)
Q Consensus 385 ~~--~~~~~~v~~v~fspdg~~l~~gs~~~------~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~~v~~~~~~p~---- 451 (616)
.. ++..+....|.-- .+++.++-...+ .....-|.|-+||+ .+.+++++.... -...+.++.-|-
T Consensus 181 ~DP~iPagyAPFnIqni-g~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~-~G~l~~r~as~g~LNaPWG~a~APa~FG~ 258 (336)
T TIGR03118 181 IDPALPAGYAPFNVQNL-GGTLYVTYAQQDADRNDEVAGAGLGYVNVFTL-NGQLLRRVASSGRLNAPWGLAIAPESFGS 258 (336)
T ss_pred cCCCCCCCCCCcceEEE-CCeEEEEEEecCCcccccccCCCcceEEEEcC-CCcEEEEeccCCcccCCceeeeChhhhCC
Confidence 11 1222222222211 233333222111 11114478888885 467777773211 123445554432
Q ss_pred -CCcEEEEeccCCCCceEEEeccc
Q 048012 452 -LNQIFATAGDKSQGGTHILYDPR 474 (616)
Q Consensus 452 -~~~l~~~~~d~~~~~~~~v~~~~ 474 (616)
...|+++--. ++.|.+||+.
T Consensus 259 ~sg~lLVGNFG---DG~InaFD~~ 279 (336)
T TIGR03118 259 LSGALLVGNFG---DGTINAYDPQ 279 (336)
T ss_pred CCCCeEEeecC---CceeEEecCC
Confidence 3445555432 5666667665
No 487
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=82.60 E-value=14 Score=33.37 Aligned_cols=30 Identities=20% Similarity=0.372 Sum_probs=24.8
Q ss_pred cEEEEEECCCCC------eEEEEeCCCcEEEEeCCC
Q 048012 301 AVTTCAWDCDGK------CIAGGIGDGSIQVWNLKP 330 (616)
Q Consensus 301 ~v~~~~~sp~g~------~l~~g~~dg~I~iwd~~~ 330 (616)
.|..++|||.|- +|++-+.+|.|.||....
T Consensus 87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 689999999553 688889999999997653
No 488
>KOG2006 consensus WD40 repeat protein [General function prediction only]
Probab=82.46 E-value=9.9 Score=42.95 Aligned_cols=75 Identities=19% Similarity=0.200 Sum_probs=51.8
Q ss_pred EEEECCCCCEEEEEEcCCcEEEEeCCCCccccccceecCCCCCCceEEEEecCCCCeEEEEeCCCeEEEEECCCC
Q 048012 154 ALAVDHSGSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSDRFLCVTGSAQAKIYDRDGL 228 (616)
Q Consensus 154 ~v~~sp~g~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~s~d~~v~vwd~~~~ 228 (616)
|+.....+.++++|..-|.+.+++.................+...+.-+.|.|+++.++.+-..|...+|...+.
T Consensus 153 c~SV~~e~~lla~G~~~g~v~~y~~~~~~ssl~~s~~~~~~~ti~~~~~~~~p~~~~~av~~~~g~ls~wS~~g~ 227 (1023)
T KOG2006|consen 153 CCSVNHEFQLLAYGTPVGEVLLYSIDEANSSLVFSNRDDDTLTVPDNNSSWRPDQNGFAVTWEKGFLAFWSNQGN 227 (1023)
T ss_pred eeeccchhhhheecccccceeehhhhhhccceeeecccCccccccccccCcCCccceeeeeecccceEEeccccc
Confidence 335556788999999999999998765433333222222333336777889999888888888888888876544
No 489
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.94 E-value=1.1e+02 Score=35.04 Aligned_cols=72 Identities=13% Similarity=0.147 Sum_probs=41.3
Q ss_pred ECCCCCEEEEEEcCCcEEEEeCCCCccccc--c----ceecCCCCCCceEEEEecCCCCeEEEEeCCCeEEEEECCCCe
Q 048012 157 VDHSGSRVLSGSYDYTVRMYDFQGMNSRLQ--S----FRQLEPSEGHQVRNLSWSPTSDRFLCVTGSAQAKIYDRDGLT 229 (616)
Q Consensus 157 ~sp~g~~lasgs~Dg~i~iwd~~~~~~~~~--~----~~~~~~~~~~~v~~l~~sp~g~~l~~~s~d~~v~vwd~~~~~ 229 (616)
+...|+.|..|+.+|.+++|.+........ . ..........+|..+...+.-..++ ...++++.++++...+
T Consensus 22 va~~~~~l~vGt~~G~L~lY~i~~~~~~~~~~~~~~~~~~~~~~~kk~i~~l~~~~~~~~ll-~l~dsqi~~~~l~~~~ 99 (877)
T KOG2063|consen 22 VAAYGNHLYVGTRDGDLYLYSIYERGNPESVELVTETVKFEKEFSKKPINKLLVCASLELLL-ILSDSQIAVHKLPELE 99 (877)
T ss_pred HHHhCCEEEEEcCCCcEEEEeccccccccchhhhcchhHHhhhhccchhHHHhhcchhcchh-eecCCcceeeecCccc
Confidence 335688999999999999999865321100 0 1111112234555555555544444 4556677777766443
No 490
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=80.69 E-value=34 Score=29.05 Aligned_cols=114 Identities=11% Similarity=0.036 Sum_probs=61.7
Q ss_pred EEEEECCCCCEEEEEEcCCcEEEEeCCCCccccc----cceecCCCCCCceEEEEecC---C-CCeEEEEeCCCeEEEEE
Q 048012 153 SALAVDHSGSRVLSGSYDYTVRMYDFQGMNSRLQ----SFRQLEPSEGHQVRNLSWSP---T-SDRFLCVTGSAQAKIYD 224 (616)
Q Consensus 153 ~~v~~sp~g~~lasgs~Dg~i~iwd~~~~~~~~~----~~~~~~~~~~~~v~~l~~sp---~-g~~l~~~s~d~~v~vwd 224 (616)
..-.|+.....|+++..-|.|.|++......... ....+ .-+..|++|+-.+ + +.-++..+....+..||
T Consensus 2 aiGkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~L--Nin~~italaaG~l~~~~~~D~LliGt~t~llaYD 79 (136)
T PF14781_consen 2 AIGKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFL--NINQEITALAAGRLKPDDGRDCLLIGTQTSLLAYD 79 (136)
T ss_pred eEEEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEE--ECCCceEEEEEEecCCCCCcCEEEEeccceEEEEE
Confidence 4456777777899999999999998654321110 11111 1233466665433 2 23344455566888999
Q ss_pred CCCCeeeeEeeCceeEeecccCCCcccceEEEEEc---CCCCCEEEEEeCCCCEEEEECCC
Q 048012 225 RDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWH---PKTKETILTSSEDGSLRIWDVNE 282 (616)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~---p~~~~~l~s~s~Dg~v~iwd~~~ 282 (616)
+....- + ..+.-...|+++.+- .....+++.| .+..|.-||...
T Consensus 80 V~~N~d------------~-Fyke~~DGvn~i~~g~~~~~~~~l~ivG-Gncsi~Gfd~~G 126 (136)
T PF14781_consen 80 VENNSD------------L-FYKEVPDGVNAIVIGKLGDIPSPLVIVG-GNCSIQGFDYEG 126 (136)
T ss_pred cccCch------------h-hhhhCccceeEEEEEecCCCCCcEEEEC-ceEEEEEeCCCC
Confidence 885541 1 123334556666552 2122344444 456676666543
No 491
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=80.18 E-value=34 Score=32.65 Aligned_cols=82 Identities=13% Similarity=0.152 Sum_probs=47.2
Q ss_pred EEEeCCCCCCCCCceeeec-CCCCCeEEEEEcCCCCeEEEEec-C--CcEEEEeCCCC---CCcceEecCCCCCCcceeE
Q 048012 324 QVWNLKPGWGSRPDIHVEK-GHSDDITALKFSSDGRILLSRSF-D--GSLKVWDLRKM---KEPLKVFEDLPNNYAQTNV 396 (616)
Q Consensus 324 ~iwd~~~~~~~~~~~~~~~-~h~~~V~~l~~spdg~~l~s~s~-D--g~v~lwd~~~~---~~~~~~~~~~~~~~~v~~v 396 (616)
.+||+.++. +..+. .....+.+-.|-+||++|.+|+. + ..+++++.... .........+....+--++
T Consensus 49 ~~yD~~tn~-----~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~ 123 (243)
T PF07250_consen 49 VEYDPNTNT-----FRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTA 123 (243)
T ss_pred EEEecCCCc-----EEeccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccc
Confidence 478887751 12121 22233445567889999999884 3 35888876541 1111111112333444556
Q ss_pred EECCCCCEEEEeec
Q 048012 397 AFSPDEQLFLTGTS 410 (616)
Q Consensus 397 ~fspdg~~l~~gs~ 410 (616)
..-+||+.|+.|+.
T Consensus 124 ~~L~DG~vlIvGG~ 137 (243)
T PF07250_consen 124 TTLPDGRVLIVGGS 137 (243)
T ss_pred eECCCCCEEEEeCc
Confidence 77789999999983
No 492
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=80.03 E-value=9 Score=41.88 Aligned_cols=39 Identities=15% Similarity=0.274 Sum_probs=30.2
Q ss_pred cceeEEECC----CCCEEEEeeccccccCCCceEEEEeCCCCceEEEEec
Q 048012 392 AQTNVAFSP----DEQLFLTGTSVERESTTGGLLCFYDREKLELVSRVGI 437 (616)
Q Consensus 392 ~v~~v~fsp----dg~~l~~gs~~~~~~~~dg~i~iwd~~~~~~~~~~~~ 437 (616)
.+..++++. +..+|++.+ .|+.|++||+.+++++.+...
T Consensus 216 ~~~~~~~~~~~~~~~~~l~tl~-------~D~~LRiW~l~t~~~~~~~~~ 258 (547)
T PF11715_consen 216 VAASLAVSSSEINDDTFLFTLS-------RDHTLRIWSLETGQCLATIDL 258 (547)
T ss_dssp -EEEEEE-----ETTTEEEEEE-------TTSEEEEEETTTTCEEEEEET
T ss_pred ccceEEEecceeCCCCEEEEEe-------CCCeEEEEECCCCeEEEEecc
Confidence 345566666 778998988 899999999999999877654
No 493
>PRK13979 DNA topoisomerase IV subunit A; Provisional
Probab=79.84 E-value=1.3e+02 Score=35.18 Aligned_cols=170 Identities=12% Similarity=0.071 Sum_probs=85.4
Q ss_pred EECCCCCEEEEEEcCCcEEEEeCCCCccccccceecCCCCCCceEEEEecCCCCeEEEEeCCCeE---EEEECCCCeeee
Q 048012 156 AVDHSGSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSDRFLCVTGSAQA---KIYDRDGLTLGE 232 (616)
Q Consensus 156 ~~sp~g~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~s~d~~v---~vwd~~~~~~~~ 232 (616)
.+-++...+++-+.+|.|+--...................+..+..+.-....++|+..+..|.+ ++|++......
T Consensus 511 dlI~~E~v~v~lS~~GyIKr~~~~~~~~q~~g~~~~~~ke~D~i~~~~~~~T~d~LL~FTn~Gkvy~ikvy~IPe~~~~- 589 (957)
T PRK13979 511 ELIVVEDVVITLSNEGFIKRIPLKSYNRSNSNVEDIEYREGDFNKFLIQSNTKDTLLIFTDKGNMYQIKGINIPEFKWK- 589 (957)
T ss_pred HcCCCcceEEEEecCCEEEEccccccccccccccccccCCCCceEEEEEEcCCCEEEEEECCCeEEEEEeeeCCCCCcC-
Confidence 34466778888888888887765432111111111111233445666556666777777777754 44555432210
Q ss_pred EeeCceeEeeccc-CCCcccce-EEEEEcC-CCCCEEEEEeCCCCEEEEECCCccccceEEeeeccCCCCccEEEEEECC
Q 048012 233 FVKGDMYIRDLKN-TKGHICGL-TCGEWHP-KTKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWDC 309 (616)
Q Consensus 233 ~~~~~~~~~~~~~-~~~h~~~v-~~~~~~p-~~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp 309 (616)
..| ..+..+.. +......| ..+.+.. ....+|+.++..|.|+-..+........-........+ ..+.++.+..
T Consensus 590 -~~G-~~I~nll~~~~~~~EkIv~i~~~~ef~~~~~lv~~Tk~G~VKrt~L~ef~~~r~~~~aikL~e~-DeLV~v~~~~ 666 (957)
T PRK13979 590 -EKG-ERLDEIIKGIDLESEKIIEAYSIEDFTPQKDFIFITDSGGIKKTSLDKFVTNYTKLMALKLKKG-EKLIKVKLVD 666 (957)
T ss_pred -CCC-eEHHHhhhccCCCCCeEEEEEEeccCCCCCEEEEEECCCeEEEEehhhccccccceEEEEcCCC-CEEEEEEEcC
Confidence 011 11111110 11011222 2333321 12246888889999999987654322211111111122 2455555544
Q ss_pred CC---CeEEEEeCCCcEEEEeCC
Q 048012 310 DG---KCIAGGIGDGSIQVWNLK 329 (616)
Q Consensus 310 ~g---~~l~~g~~dg~I~iwd~~ 329 (616)
.+ ..++..+..|.+..|+..
T Consensus 667 ~~~~~~~Iil~Tk~G~airF~~~ 689 (957)
T PRK13979 667 RTREEKFIKIKTKKGLSFTVEEP 689 (957)
T ss_pred CCCCCCEEEEEeCCCcEEEEEHH
Confidence 32 568888889988888864
No 494
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=78.16 E-value=57 Score=30.09 Aligned_cols=174 Identities=13% Similarity=0.108 Sum_probs=86.9
Q ss_pred CEEEEEeC--CCCEEEEECCCccccceEEeeeccCCCCccEEEEEECCCCCeE-EEEeCCCcEEEEeCCCCCCCCCceee
Q 048012 264 ETILTSSE--DGSLRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWDCDGKCI-AGGIGDGSIQVWNLKPGWGSRPDIHV 340 (616)
Q Consensus 264 ~~l~s~s~--Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l-~~g~~dg~I~iwd~~~~~~~~~~~~~ 340 (616)
.++.+.+. ...||+||+.+++...........--+. .++.+ |..+ +-.-.+|.-..||.++. ..+..
T Consensus 57 ~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgE-Git~~-----gd~~y~LTw~egvaf~~d~~t~----~~lg~ 126 (262)
T COG3823 57 HILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGE-GITKL-----GDYFYQLTWKEGVAFKYDADTL----EELGR 126 (262)
T ss_pred EEEEeccccccceeEEEeccCceEEEEeecCCcccccc-ceeec-----cceEEEEEeccceeEEEChHHh----hhhcc
Confidence 56666554 3469999999776544332221000000 12211 2222 22335788888998763 22222
Q ss_pred ecCCCCCeEEEEEcCCCCeEEEEecCCcEEEEeCCCCCCcceE---ecCCCCCCcceeEEECCCCCEEEEeeccccccCC
Q 048012 341 EKGHSDDITALKFSSDGRILLSRSFDGSLKVWDLRKMKEPLKV---FEDLPNNYAQTNVAFSPDEQLFLTGTSVERESTT 417 (616)
Q Consensus 341 ~~~h~~~V~~l~~spdg~~l~s~s~Dg~v~lwd~~~~~~~~~~---~~~~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~ 417 (616)
+. ..+.=+.++ .|+..|+.+....+++.-|..++...-.+ ..+.+ -..+..+.|- +|...+-.- .
T Consensus 127 ~~-y~GeGWgLt--~d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~p-v~~LNELE~V-dG~lyANVw-------~ 194 (262)
T COG3823 127 FS-YEGEGWGLT--SDDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVP-VSKLNELEWV-DGELYANVW-------Q 194 (262)
T ss_pred cc-cCCcceeee--cCCcceEeeCCceEEEecCHHHhhhcceEEEEECCee-cccccceeee-ccEEEEeee-------e
Confidence 21 223445555 35666777666667777777654332111 11111 0112233332 555555444 4
Q ss_pred CceEEEEeCCCCceEEEEecC-----------CCCCeEEEEEcCCCCcEEEEe
Q 048012 418 GGLLCFYDREKLELVSRVGIS-----------PACSVVQCAWHPKLNQIFATA 459 (616)
Q Consensus 418 dg~i~iwd~~~~~~~~~~~~~-----------~~~~v~~~~~~p~~~~l~~~~ 459 (616)
...|...+..+|+.+..+..+ +....+.+++.|+.+.|+.++
T Consensus 195 t~~I~rI~p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 195 TTRIARIDPDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred ecceEEEcCCCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence 556667777777777666442 222345556666555555444
No 495
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=77.50 E-value=94 Score=32.27 Aligned_cols=143 Identities=13% Similarity=0.123 Sum_probs=77.4
Q ss_pred EEEEEECCCCCeEEEEeCCCcEEEEeCCCCCCCCCceeeecCCCCCeEEEEEcCCCCeEEEEecCCcEEEEeCCCCCC--
Q 048012 302 VTTCAWDCDGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHSDDITALKFSSDGRILLSRSFDGSLKVWDLRKMKE-- 379 (616)
Q Consensus 302 v~~~~~sp~g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~v~lwd~~~~~~-- 379 (616)
...+..+++|.++++|..-..++-||--.. .-..........++++.|.+++.+++++ ..|.+.. ....+..
T Consensus 241 f~~v~~~~dG~~~~vg~~G~~~~s~d~G~~----~W~~~~~~~~~~l~~v~~~~dg~l~l~g-~~G~l~~-S~d~G~~~~ 314 (398)
T PLN00033 241 FSTVNRSPDGDYVAVSSRGNFYLTWEPGQP----YWQPHNRASARRIQNMGWRADGGLWLLT-RGGGLYV-SKGTGLTEE 314 (398)
T ss_pred eeeEEEcCCCCEEEEECCccEEEecCCCCc----ceEEecCCCccceeeeeEcCCCCEEEEe-CCceEEE-ecCCCCccc
Confidence 344566788877777754333333443211 0011222234568999999999887766 4565433 3222211
Q ss_pred --cceEecCCCCCCcceeEEECCCCCEEEEeeccccccCCCceEEEEeCCCCceEEEEec--CCCCCeEEEEEcCCCCcE
Q 048012 380 --PLKVFEDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREKLELVSRVGI--SPACSVVQCAWHPKLNQI 455 (616)
Q Consensus 380 --~~~~~~~~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~~~~~~~~~~--~~~~~v~~~~~~p~~~~l 455 (616)
.+...........++.+.|.+++..+++|. .|.|... ...++.-..... .-...+..+.|.+++.-+
T Consensus 315 ~~~f~~~~~~~~~~~l~~v~~~~d~~~~a~G~--------~G~v~~s-~D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~ 385 (398)
T PLN00033 315 DFDFEEADIKSRGFGILDVGYRSKKEAWAAGG--------SGILLRS-TDGGKSWKRDKGADNIAANLYSVKFFDDKKGF 385 (398)
T ss_pred ccceeecccCCCCcceEEEEEcCCCcEEEEEC--------CCcEEEe-CCCCcceeEccccCCCCcceeEEEEcCCCceE
Confidence 122221111234588899999999988885 6766444 344444333321 112457788887775555
Q ss_pred EEEe
Q 048012 456 FATA 459 (616)
Q Consensus 456 ~~~~ 459 (616)
+++.
T Consensus 386 ~~G~ 389 (398)
T PLN00033 386 VLGN 389 (398)
T ss_pred EEeC
Confidence 5443
No 496
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=77.19 E-value=75 Score=30.98 Aligned_cols=157 Identities=13% Similarity=0.051 Sum_probs=89.9
Q ss_pred eEEEEecCCCCeEEEEeCCCeEEEEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEEE
Q 048012 199 VRNLSWSPTSDRFLCVTGSAQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIW 278 (616)
Q Consensus 199 v~~l~~sp~g~~l~~~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iw 278 (616)
+..+.++ +++...+..+.-++|+|+....-... +..+.. .+--.++..+ | ++...+..|.-+.+.
T Consensus 89 ~~Dv~vs--e~yvyvad~ssGL~IvDIS~P~sP~~---------~~~lnt-~gyaygv~vs--G-n~aYVadlddgfLiv 153 (370)
T COG5276 89 FADVRVS--EEYVYVADWSSGLRIVDISTPDSPTL---------IGFLNT-DGYAYGVYVS--G-NYAYVADLDDGFLIV 153 (370)
T ss_pred hheeEec--ccEEEEEcCCCceEEEeccCCCCcce---------eccccC-CceEEEEEec--C-CEEEEeeccCcEEEE
Confidence 4556665 45677777888899999876542111 111111 0112333332 3 678888867778899
Q ss_pred ECCCccccceEEeeeccCCCCccEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCCCCCceeeecCCCCCeEEEEEcCCCC
Q 048012 279 DVNEFKSQKQVIKPKLARPGRVAVTTCAWDCDGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHSDDITALKFSSDGR 358 (616)
Q Consensus 279 d~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~ 358 (616)
|+.+.......-+.... .. .-..++. .|++...++.|+-+.|.|+... ..+.+.........+.++..+++.-
T Consensus 154 dvsdpssP~lagrya~~-~~--d~~~v~I--SGn~AYvA~~d~GL~ivDVSnp--~sPvli~~~n~g~g~~sv~vsdnr~ 226 (370)
T COG5276 154 DVSDPSSPQLAGRYALP-GG--DTHDVAI--SGNYAYVAWRDGGLTIVDVSNP--HSPVLIGSYNTGPGTYSVSVSDNRA 226 (370)
T ss_pred ECCCCCCceeeeeeccC-CC--CceeEEE--ecCeEEEEEeCCCeEEEEccCC--CCCeEEEEEecCCceEEEEecCCee
Confidence 99875433222111111 11 1234444 3888888999999999999875 2223222222233688888887655
Q ss_pred eEEEEecCCcEEEEeCCCCCC
Q 048012 359 ILLSRSFDGSLKVWDLRKMKE 379 (616)
Q Consensus 359 ~l~s~s~Dg~v~lwd~~~~~~ 379 (616)
+++.. +.-+.+-|....+.
T Consensus 227 y~vvy--~egvlivd~s~~ss 245 (370)
T COG5276 227 YLVVY--DEGVLIVDVSGPSS 245 (370)
T ss_pred EEEEc--ccceEEEecCCCCC
Confidence 55543 44577777776543
No 497
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=77.17 E-value=79 Score=31.19 Aligned_cols=207 Identities=13% Similarity=0.111 Sum_probs=101.4
Q ss_pred cEEEEEECCCCCEEEE--EEcC----------CcEEEEeCCCCccccccceec--CCCCCCceEEEEecCCC----CeEE
Q 048012 151 IVSALAVDHSGSRVLS--GSYD----------YTVRMYDFQGMNSRLQSFRQL--EPSEGHQVRNLSWSPTS----DRFL 212 (616)
Q Consensus 151 ~V~~v~~sp~g~~las--gs~D----------g~i~iwd~~~~~~~~~~~~~~--~~~~~~~v~~l~~sp~g----~~l~ 212 (616)
.|..+..+..+++-+. |..+ -.|.+||+.+.. ..+.+..- .......+..+.+.... +.++
T Consensus 2 sV~~v~iD~~~rLWVlD~G~~~~~~~~~~~~~pKLv~~Dl~t~~-li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~a 80 (287)
T PF03022_consen 2 SVQRVQIDECGRLWVLDSGRPNGLQPPKQVCPPKLVAFDLKTNQ-LIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFA 80 (287)
T ss_dssp -EEEEEE-TTSEEEEEE-CCHSSSSTTGHTS--EEEEEETTTTC-EEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEE
T ss_pred cccEEEEcCCCCEEEEeCCCcCCCCCCCCCCCcEEEEEECCCCc-EEEEEECChHHcccccccceEEEEccCCCCcceEE
Confidence 4677778777765443 2211 267888888753 22222111 11134457777776632 1333
Q ss_pred EEe--CCCeEEEEECCCCeeeeEeeCceeEeecc-------cCCCcccceEEEEEcC---CCCCEEEEEeCCCCEEEEEC
Q 048012 213 CVT--GSAQAKIYDRDGLTLGEFVKGDMYIRDLK-------NTKGHICGLTCGEWHP---KTKETILTSSEDGSLRIWDV 280 (616)
Q Consensus 213 ~~s--~d~~v~vwd~~~~~~~~~~~~~~~~~~~~-------~~~~h~~~v~~~~~~p---~~~~~l~s~s~Dg~v~iwd~ 280 (616)
..+ ..+.+.|+|+..+..+.+....+...... ........+..++.+| ++ ..|+-+...+ -++|-+
T Consensus 81 YItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~~~~~i~g~~~~~~dg~~gial~~~~~d~-r~LYf~~lss-~~ly~v 158 (287)
T PF03022_consen 81 YITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDAGPFTIGGESFQWPDGIFGIALSPISPDG-RWLYFHPLSS-RKLYRV 158 (287)
T ss_dssp EEEETTTCEEEEEETTTTEEEEEETCGCTTS-SSEEEEETTEEEEETTSEEEEEE-TTSTTS--EEEEEETT--SEEEEE
T ss_pred EEeCCCcCcEEEEEccCCcEEEEecCCcceeccccceeccCceEecCCCccccccCCCCCCc-cEEEEEeCCC-CcEEEE
Confidence 333 34689999999988776654432211100 0001122366666655 44 3555554433 233333
Q ss_pred CCc-----cc---c---ceEEeeeccCCCCccEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCCCCCcee-eecCC-CCC
Q 048012 281 NEF-----KS---Q---KQVIKPKLARPGRVAVTTCAWDCDGKCIAGGIGDGSIQVWNLKPGWGSRPDIH-VEKGH-SDD 347 (616)
Q Consensus 281 ~~~-----~~---~---~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~g~~dg~I~iwd~~~~~~~~~~~~-~~~~h-~~~ 347 (616)
.+. .. . ..+.. ...++ .....++++++|.++++--..+.|..|+............ ..... -..
T Consensus 159 ~T~~L~~~~~~~~~~~~~~v~~-lG~k~--~~s~g~~~D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~ 235 (287)
T PF03022_consen 159 PTSVLRDPSLSDAQALASQVQD-LGDKG--SQSDGMAIDPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQW 235 (287)
T ss_dssp EHHHHCSTT--HHH-HHHT-EE-EEE-----SECEEEEETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSS
T ss_pred EHHHhhCcccccccccccccee-ccccC--CCCceEEECCCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeec
Confidence 211 00 0 00100 00001 1345678889999999999999999999886421111111 11222 356
Q ss_pred eEEEEEcC--CCCeEEEE
Q 048012 348 ITALKFSS--DGRILLSR 363 (616)
Q Consensus 348 V~~l~~sp--dg~~l~s~ 363 (616)
+.++.+.+ +|.+.+..
T Consensus 236 pd~~~i~~~~~g~L~v~s 253 (287)
T PF03022_consen 236 PDGLKIDPEGDGYLWVLS 253 (287)
T ss_dssp EEEEEE-T--TS-EEEEE
T ss_pred cceeeeccccCceEEEEE
Confidence 78899988 66655544
No 498
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=77.12 E-value=1.5e+02 Score=34.32 Aligned_cols=106 Identities=14% Similarity=0.104 Sum_probs=62.3
Q ss_pred EECCCCCeEEEEeCCCcEEEEeCCCCCCCCCceee--ecCCCCCeEEEEEcCCCCeEEEEecCCcEEEEeCCCCCCcceE
Q 048012 306 AWDCDGKCIAGGIGDGSIQVWNLKPGWGSRPDIHV--EKGHSDDITALKFSSDGRILLSRSFDGSLKVWDLRKMKEPLKV 383 (616)
Q Consensus 306 ~~sp~g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~--~~~h~~~V~~l~~spdg~~l~s~s~Dg~v~lwd~~~~~~~~~~ 383 (616)
+..|-..++++|- ...+++||+-.. +.+.. ++.-...|+++.+. +..++.|.....|.++-.+.....+..
T Consensus 940 Ai~~f~~~~Lagv-G~~l~~YdlG~K----~lLRk~e~k~~p~~Is~iqt~--~~RI~VgD~qeSV~~~~y~~~~n~l~~ 1012 (1205)
T KOG1898|consen 940 AICPFQGRVLAGV-GRFLRLYDLGKK----KLLRKCELKFIPNRISSIQTY--GARIVVGDIQESVHFVRYRREDNQLIV 1012 (1205)
T ss_pred EEeccCCEEEEec-ccEEEEeeCChH----HHHhhhhhccCceEEEEEeec--ceEEEEeeccceEEEEEEecCCCeEEE
Confidence 3446555666654 568999999753 22221 12234568888875 667888877666766665554555555
Q ss_pred ecCCCCCCcceeEEECCCCCEEEEeeccccccCCCceEEEEeC
Q 048012 384 FEDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDR 426 (616)
Q Consensus 384 ~~~~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~ 426 (616)
+..-+-...|+.+.+-.. ..++.+. .=|.+.+..+
T Consensus 1013 fadD~~pR~Vt~~~~lD~-~tvagaD-------rfGNi~~vR~ 1047 (1205)
T KOG1898|consen 1013 FADDPVPRHVTALELLDY-DTVAGAD-------RFGNIAVVRI 1047 (1205)
T ss_pred EeCCCccceeeEEEEecC-Cceeecc-------ccCcEEEEEC
Confidence 555444455776666543 4455554 4455555543
No 499
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=76.93 E-value=89 Score=31.67 Aligned_cols=188 Identities=15% Similarity=0.073 Sum_probs=0.0
Q ss_pred CCCEEEEEEcC-----------CcEEEEeCCCCccccccceecC-CCCCCceEEEEe-cCCCCeEEEEeCC---------
Q 048012 160 SGSRVLSGSYD-----------YTVRMYDFQGMNSRLQSFRQLE-PSEGHQVRNLSW-SPTSDRFLCVTGS--------- 217 (616)
Q Consensus 160 ~g~~lasgs~D-----------g~i~iwd~~~~~~~~~~~~~~~-~~~~~~v~~l~~-sp~g~~l~~~s~d--------- 217 (616)
++.+++.|+.+ ..+..||.... .+..+. ......-..... .-++...++|+.+
T Consensus 63 ~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~-----~W~~~~~~~p~~~~~~~~~~~~~g~IYviGG~~~~~~~~~~~ 137 (346)
T TIGR03547 63 DGKLYVFGGIGKANSEGSPQVFDDVYRYDPKKN-----SWQKLDTRSPVGLLGASGFSLHNGQAYFTGGVNKNIFDGYFA 137 (346)
T ss_pred CCEEEEEeCCCCCCCCCcceecccEEEEECCCC-----EEecCCCCCCCcccceeEEEEeCCEEEEEcCcChHHHHHHHh
Q ss_pred ------------------------------CeEEEEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEE
Q 048012 218 ------------------------------AQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETIL 267 (616)
Q Consensus 218 ------------------------------~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~ 267 (616)
..+.+||..+.+. ..+..+......-.+++.. +..+++
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~YDp~t~~W----------~~~~~~p~~~r~~~~~~~~--~~~iyv 205 (346)
T TIGR03547 138 DLSAADKDSEPKDKLIAAYFSQPPEDYFWNKNVLSYDPSTNQW----------RNLGENPFLGTAGSAIVHK--GNKLLL 205 (346)
T ss_pred hHhhcCccchhhhhhHHHHhCCChhHcCccceEEEEECCCCce----------eECccCCCCcCCCceEEEE--CCEEEE
Q ss_pred EEeCC------CCEEEEECCCccccceEEeeeccCC---CCccEEEEEECCCCCeEEEEeCC------------------
Q 048012 268 TSSED------GSLRIWDVNEFKSQKQVIKPKLARP---GRVAVTTCAWDCDGKCIAGGIGD------------------ 320 (616)
Q Consensus 268 s~s~D------g~v~iwd~~~~~~~~~~~~~~~~~~---~~~~v~~~~~sp~g~~l~~g~~d------------------ 320 (616)
.|+.+ ..+.++++................. +.......+...+++++++|+.+
T Consensus 206 ~GG~~~~~~~~~~~~~y~~~~~~~~W~~~~~m~~~r~~~~~~~~~~~a~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~ 285 (346)
T TIGR03547 206 INGEIKPGLRTAEVKQYLFTGGKLEWNKLPPLPPPKSSSQEGLAGAFAGISNGVLLVAGGANFPGAQENYKNGKLYAHEG 285 (346)
T ss_pred EeeeeCCCccchheEEEEecCCCceeeecCCCCCCCCCccccccEEeeeEECCEEEEeecCCCCCchhhhhcCCccccCC
Q ss_pred ----CcEEEEeCCCCCCCCCceeeecCCCCCeEEEEEcCCCCeEEEEecCCc
Q 048012 321 ----GSIQVWNLKPGWGSRPDIHVEKGHSDDITALKFSSDGRILLSRSFDGS 368 (616)
Q Consensus 321 ----g~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~ 368 (616)
..+.+||..+. .-.....-....-...+..-++++++.|+.+..
T Consensus 286 ~~~~~~~e~yd~~~~----~W~~~~~lp~~~~~~~~~~~~~~iyv~GG~~~~ 333 (346)
T TIGR03547 286 LIKAWSSEVYALDNG----KWSKVGKLPQGLAYGVSVSWNNGVLLIGGENSG 333 (346)
T ss_pred CCceeEeeEEEecCC----cccccCCCCCCceeeEEEEcCCEEEEEeccCCC
No 500
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=76.87 E-value=6.7 Score=42.90 Aligned_cols=83 Identities=14% Similarity=0.152 Sum_probs=44.1
Q ss_pred CCCCeEEEEeCCCeEEEEECCC-----CeeeeEeeCce-eEeecccCC--------CcccceEEEEEcC---CCCCEEEE
Q 048012 206 PTSDRFLCVTGSAQAKIYDRDG-----LTLGEFVKGDM-YIRDLKNTK--------GHICGLTCGEWHP---KTKETILT 268 (616)
Q Consensus 206 p~g~~l~~~s~d~~v~vwd~~~-----~~~~~~~~~~~-~~~~~~~~~--------~h~~~v~~~~~~p---~~~~~l~s 268 (616)
.+...|+++..||.+....+.. ....+...... +.+.+..+. .....+..++.+. ++..+|++
T Consensus 156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t 235 (547)
T PF11715_consen 156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT 235 (547)
T ss_dssp -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence 4667888899999888887653 22222222211 111111111 1123344455544 24469999
Q ss_pred EeCCCCEEEEECCCccccce
Q 048012 269 SSEDGSLRIWDVNEFKSQKQ 288 (616)
Q Consensus 269 ~s~Dg~v~iwd~~~~~~~~~ 288 (616)
.+.|++||+||+.++.+...
T Consensus 236 l~~D~~LRiW~l~t~~~~~~ 255 (547)
T PF11715_consen 236 LSRDHTLRIWSLETGQCLAT 255 (547)
T ss_dssp EETTSEEEEEETTTTCEEEE
T ss_pred EeCCCeEEEEECCCCeEEEE
Confidence 99999999999998776443
Done!