Query 048012
Match_columns 616
No_of_seqs 1052 out of 3901
Neff 9.9
Searched_HMMs 29240
Date Mon Mar 25 09:05:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048012.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/048012hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1got_B GT-beta; complex (GTP-b 100.0 2.4E-41 8.2E-46 345.0 43.5 297 138-472 44-340 (340)
2 1vyh_C Platelet-activating fac 100.0 1.6E-41 5.5E-46 355.5 41.2 289 142-473 101-409 (410)
3 1nr0_A Actin interacting prote 100.0 1.6E-41 5.4E-46 374.2 42.7 333 141-513 51-509 (611)
4 2pbi_B Guanine nucleotide-bind 100.0 1.3E-40 4.5E-45 341.5 41.3 301 137-472 52-354 (354)
5 3iz6_a 40S ribosomal protein R 100.0 2.5E-41 8.6E-46 350.4 34.6 309 140-474 57-374 (380)
6 2ynn_A Coatomer subunit beta'; 100.0 2.2E-40 7.4E-45 332.4 39.9 294 139-474 3-301 (304)
7 3ow8_A WD repeat-containing pr 100.0 1.6E-40 5.4E-45 335.9 38.7 290 143-473 26-319 (321)
8 3fm0_A Protein CIAO1; WDR39,SG 100.0 4.7E-40 1.6E-44 336.1 38.9 304 141-474 7-334 (345)
9 1nr0_A Actin interacting prote 100.0 8.3E-40 2.8E-44 360.5 42.4 334 143-499 141-568 (611)
10 2xzm_R RACK1; ribosome, transl 100.0 4.5E-39 1.5E-43 328.6 41.3 297 140-473 12-338 (343)
11 3frx_A Guanine nucleotide-bind 100.0 2.6E-39 8.8E-44 326.9 38.1 293 141-473 9-315 (319)
12 4ery_A WD repeat-containing pr 100.0 2.7E-38 9.2E-43 318.2 42.5 297 139-474 13-311 (312)
13 2ymu_A WD-40 repeat protein; u 100.0 2.9E-38 9.9E-43 345.9 45.7 306 141-495 254-577 (577)
14 4g56_B MGC81050 protein; prote 100.0 5.2E-39 1.8E-43 329.9 36.5 294 146-474 39-342 (357)
15 1erj_A Transcriptional repress 100.0 1.4E-38 4.7E-43 331.4 39.4 295 146-497 61-388 (393)
16 4gqb_B Methylosome protein 50; 100.0 5.1E-39 1.8E-43 327.6 35.3 292 147-474 28-330 (344)
17 2hes_X YDR267CP; beta-propelle 100.0 3.5E-38 1.2E-42 320.2 40.1 307 141-474 6-327 (330)
18 2ymu_A WD-40 repeat protein; u 100.0 9.3E-38 3.2E-42 341.9 45.2 308 141-497 213-538 (577)
19 2pm9_A Protein WEB1, protein t 100.0 3.3E-39 1.1E-43 338.0 29.7 323 148-499 11-415 (416)
20 4aow_A Guanine nucleotide-bind 100.0 6.4E-37 2.2E-41 311.3 40.8 304 142-498 31-337 (340)
21 3dm0_A Maltose-binding peripla 100.0 4.7E-37 1.6E-41 343.9 42.4 316 141-497 374-692 (694)
22 1vyh_C Platelet-activating fac 100.0 2.6E-37 8.9E-42 323.5 36.5 266 193-496 105-409 (410)
23 3ow8_A WD repeat-containing pr 100.0 3.1E-37 1E-41 311.8 35.7 269 193-497 29-320 (321)
24 1r5m_A SIR4-interacting protei 100.0 5.4E-37 1.8E-41 321.5 37.6 323 144-497 40-424 (425)
25 4g56_B MGC81050 protein; prote 100.0 3E-37 1E-41 316.8 31.9 306 154-498 10-343 (357)
26 4gqb_B Methylosome protein 50; 100.0 8.6E-37 2.9E-41 311.2 34.4 254 145-431 78-334 (344)
27 1gxr_A ESG1, transducin-like e 100.0 1.4E-35 4.9E-40 300.6 41.2 293 142-474 44-336 (337)
28 1got_B GT-beta; complex (GTP-b 100.0 3.9E-36 1.3E-40 306.4 36.9 270 192-495 51-340 (340)
29 3fm0_A Protein CIAO1; WDR39,SG 100.0 2.6E-36 9E-41 308.3 35.6 282 195-500 14-337 (345)
30 3zwl_B Eukaryotic translation 100.0 1.5E-35 5.3E-40 304.2 41.5 297 140-474 23-345 (369)
31 3frx_A Guanine nucleotide-bind 100.0 4.5E-36 1.5E-40 303.1 36.2 277 191-498 12-317 (319)
32 4e54_B DNA damage-binding prot 100.0 6.5E-36 2.2E-40 315.6 36.1 303 144-474 114-429 (435)
33 1gxr_A ESG1, transducin-like e 100.0 3.3E-36 1.1E-40 305.3 32.4 311 147-496 7-335 (337)
34 3vl1_A 26S proteasome regulato 100.0 3.3E-36 1.1E-40 315.8 33.1 281 151-474 58-364 (420)
35 3ei3_B DNA damage-binding prot 100.0 2.5E-35 8.4E-40 305.5 39.1 299 139-474 63-381 (383)
36 2ynn_A Coatomer subunit beta'; 100.0 1.1E-35 3.7E-40 298.2 35.1 246 193-474 10-258 (304)
37 2pm7_B Protein transport prote 100.0 1.2E-35 3.9E-40 296.9 34.7 261 143-427 3-284 (297)
38 3iz6_a 40S ribosomal protein R 100.0 1.4E-36 4.8E-41 314.7 28.6 277 193-499 63-376 (380)
39 3mkq_A Coatomer beta'-subunit; 100.0 1.5E-35 5.3E-40 337.8 39.4 336 140-513 4-410 (814)
40 3gre_A Serine/threonine-protei 100.0 6.3E-36 2.2E-40 315.7 31.4 334 142-495 55-437 (437)
41 2pbi_B Guanine nucleotide-bind 100.0 3.5E-35 1.2E-39 301.0 34.9 272 193-495 61-354 (354)
42 1sq9_A Antiviral protein SKI8; 100.0 5E-35 1.7E-39 304.3 36.1 290 141-453 8-367 (397)
43 3k26_A Polycomb protein EED; W 100.0 5.9E-35 2E-39 299.7 34.3 301 143-474 12-365 (366)
44 3dw8_B Serine/threonine-protei 100.0 1.3E-34 4.3E-39 306.3 37.3 276 147-433 26-378 (447)
45 3sfz_A APAF-1, apoptotic pepti 100.0 1.9E-34 6.5E-39 343.9 42.6 331 141-513 607-1021(1249)
46 3i2n_A WD repeat-containing pr 100.0 7.4E-35 2.5E-39 298.0 33.7 302 138-474 7-352 (357)
47 1k8k_C P40, ARP2/3 complex 41 100.0 1.1E-34 3.9E-39 298.6 34.0 258 144-428 3-274 (372)
48 2j04_B YDR362CP, TAU91; beta p 100.0 3.3E-36 1.1E-40 322.6 22.9 326 148-499 132-518 (524)
49 2hes_X YDR267CP; beta-propelle 100.0 7.3E-35 2.5E-39 295.7 31.3 280 193-497 11-327 (330)
50 2pm9_A Protein WEB1, protein t 100.0 2.9E-35 9.9E-40 308.0 29.0 309 146-475 64-414 (416)
51 2xzm_R RACK1; ribosome, transl 100.0 2.4E-34 8.3E-39 293.5 34.1 280 192-498 17-340 (343)
52 4e54_B DNA damage-binding prot 100.0 7.8E-35 2.7E-39 307.3 30.6 277 195-498 118-430 (435)
53 3sfz_A APAF-1, apoptotic pepti 100.0 2E-34 7E-39 343.6 37.9 326 141-498 649-1158(1249)
54 4a11_B DNA excision repair pro 100.0 4.5E-33 1.5E-37 290.1 43.0 304 141-475 35-365 (408)
55 1yfq_A Cell cycle arrest prote 100.0 2.6E-34 9E-39 292.4 32.8 281 144-461 6-313 (342)
56 2oaj_A Protein SNI1; WD40 repe 100.0 7E-34 2.4E-38 325.1 39.9 340 142-501 10-608 (902)
57 1r5m_A SIR4-interacting protei 100.0 3.9E-34 1.3E-38 299.7 34.7 295 147-474 106-424 (425)
58 4ery_A WD repeat-containing pr 100.0 1.4E-33 4.9E-38 283.6 37.4 269 192-496 19-310 (312)
59 3odt_A Protein DOA1; ubiquitin 100.0 1.2E-33 4.1E-38 283.4 36.8 286 139-474 8-295 (313)
60 3bg1_A Protein SEC13 homolog; 100.0 7.5E-35 2.5E-39 293.7 25.2 259 143-427 7-292 (316)
61 1pgu_A Actin interacting prote 100.0 1.1E-33 3.8E-38 311.5 36.9 319 141-498 152-614 (615)
62 3vl1_A 26S proteasome regulato 100.0 1.3E-33 4.5E-38 296.0 34.4 293 146-474 95-418 (420)
63 3dwl_C Actin-related protein 2 100.0 7.9E-35 2.7E-39 300.8 24.3 258 144-427 6-280 (377)
64 4h5i_A Guanine nucleotide-exch 100.0 2.6E-34 9E-39 295.7 26.2 298 149-473 14-341 (365)
65 2ovr_B FBW7, F-BOX/WD repeat p 100.0 1.7E-32 5.7E-37 290.4 40.7 307 141-499 110-443 (445)
66 1pgu_A Actin interacting prote 100.0 2.4E-33 8.3E-38 308.8 35.1 315 140-498 54-402 (615)
67 4aez_A CDC20, WD repeat-contai 100.0 4.2E-33 1.4E-37 290.8 34.6 291 143-474 85-379 (401)
68 3jrp_A Fusion protein of prote 100.0 2.4E-33 8.1E-38 289.2 32.1 267 143-433 5-292 (379)
69 4aow_A Guanine nucleotide-bind 100.0 1.2E-32 4.2E-37 279.7 36.0 287 190-513 32-324 (340)
70 2j04_B YDR362CP, TAU91; beta p 100.0 5.2E-34 1.8E-38 305.6 27.0 296 143-475 201-517 (524)
71 4gga_A P55CDC, cell division c 100.0 2.8E-32 9.7E-37 286.3 39.7 299 137-474 89-394 (420)
72 3mkq_A Coatomer beta'-subunit; 100.0 6.9E-33 2.4E-37 315.9 37.6 324 142-507 48-438 (814)
73 2oaj_A Protein SNI1; WD40 repe 100.0 1.5E-33 5E-38 322.4 31.4 336 148-496 97-659 (902)
74 3dm0_A Maltose-binding peripla 100.0 4.2E-33 1.4E-37 311.9 33.3 287 192-513 378-680 (694)
75 2pm7_B Protein transport prote 100.0 2.2E-32 7.5E-37 273.1 34.8 255 192-475 5-285 (297)
76 3f3f_A Nucleoporin SEH1; struc 100.0 1E-32 3.5E-37 280.3 32.7 316 143-476 5-338 (351)
77 3v7d_B Cell division control p 100.0 2.7E-32 9.4E-37 290.2 37.3 290 140-474 112-420 (464)
78 3ei3_B DNA damage-binding prot 100.0 1E-32 3.5E-37 285.8 32.5 268 194-497 71-381 (383)
79 1erj_A Transcriptional repress 100.0 2E-32 7E-37 284.7 34.7 255 147-429 121-390 (393)
80 4ggc_A P55CDC, cell division c 100.0 1.7E-31 5.8E-36 268.5 39.7 300 136-474 8-314 (318)
81 3zwl_B Eukaryotic translation 100.0 2.5E-32 8.4E-37 280.3 34.2 276 194-500 30-348 (369)
82 3mmy_A MRNA export factor; mRN 100.0 2.5E-32 8.5E-37 280.2 33.3 289 137-461 27-336 (368)
83 3dwl_C Actin-related protein 2 100.0 1.4E-33 4.8E-38 291.4 23.8 243 195-460 10-271 (377)
84 3v7d_B Cell division control p 100.0 2.5E-31 8.5E-36 282.8 39.4 298 141-476 154-464 (464)
85 1k8k_C P40, ARP2/3 complex 41 100.0 2.2E-32 7.6E-37 281.4 30.2 280 194-499 6-362 (372)
86 2j04_A TAU60, YPL007P, hypothe 100.0 5.2E-33 1.8E-37 290.6 24.6 309 146-511 12-346 (588)
87 2aq5_A Coronin-1A; WD40 repeat 100.0 4E-32 1.4E-36 283.4 31.0 296 152-474 37-341 (402)
88 3bg1_A Protein SEC13 homolog; 100.0 1.5E-32 5E-37 276.9 26.8 266 189-485 6-301 (316)
89 3jro_A Fusion protein of prote 100.0 3.3E-32 1.1E-36 306.7 28.7 264 143-430 3-287 (753)
90 2ovr_B FBW7, F-BOX/WD repeat p 100.0 1.9E-30 6.6E-35 274.5 39.4 288 141-476 151-443 (445)
91 1sq9_A Antiviral protein SKI8; 100.0 8.7E-32 3E-36 279.9 28.2 288 189-498 9-395 (397)
92 1p22_A F-BOX/WD-repeat protein 100.0 1E-30 3.4E-35 275.8 35.8 277 144-474 128-413 (435)
93 3i2n_A WD repeat-containing pr 100.0 2.2E-31 7.6E-36 272.1 28.4 274 191-499 13-354 (357)
94 2xyi_A Probable histone-bindin 100.0 4.8E-31 1.6E-35 277.8 31.1 269 142-429 121-411 (430)
95 4a11_B DNA excision repair pro 100.0 5.8E-31 2E-35 274.1 30.8 308 170-500 22-367 (408)
96 3k26_A Polycomb protein EED; W 100.0 2.7E-31 9.3E-36 272.3 27.7 258 147-428 67-366 (366)
97 4h5i_A Guanine nucleotide-exch 100.0 1.6E-31 5.6E-36 274.8 21.8 258 140-428 64-343 (365)
98 3dw8_B Serine/threonine-protei 100.0 6.6E-31 2.3E-35 277.7 27.1 262 195-474 27-372 (447)
99 4aez_A CDC20, WD repeat-contai 100.0 3.9E-30 1.3E-34 268.3 32.4 252 147-436 132-388 (401)
100 3vu4_A KMHSV2; beta-propeller 100.0 5.3E-30 1.8E-34 262.6 32.8 243 144-430 14-273 (355)
101 3jrp_A Fusion protein of prote 100.0 3.6E-30 1.2E-34 265.3 30.4 254 193-475 8-287 (379)
102 3odt_A Protein DOA1; ubiquitin 100.0 1.5E-29 5.3E-34 253.4 34.2 265 192-500 14-298 (313)
103 3lrv_A PRE-mRNA-splicing facto 100.0 1E-30 3.6E-35 266.6 25.1 270 156-461 43-323 (343)
104 4gga_A P55CDC, cell division c 100.0 6.2E-30 2.1E-34 268.5 31.5 267 198-497 107-394 (420)
105 2xyi_A Probable histone-bindin 100.0 7.4E-30 2.5E-34 268.7 32.0 309 150-474 46-409 (430)
106 3gre_A Serine/threonine-protei 100.0 5.5E-32 1.9E-36 285.5 15.2 308 156-500 34-361 (437)
107 2aq5_A Coronin-1A; WD40 repeat 100.0 2.4E-30 8.2E-35 269.9 26.9 259 144-431 76-345 (402)
108 2vdu_B TRNA (guanine-N(7)-)-me 100.0 1E-29 3.5E-34 269.4 31.5 297 149-474 4-390 (450)
109 3f3f_A Nucleoporin SEH1; struc 100.0 1E-29 3.5E-34 258.1 27.2 293 190-500 5-339 (351)
110 2j04_A TAU60, YPL007P, hypothe 100.0 4.9E-30 1.7E-34 268.2 24.3 278 145-488 48-351 (588)
111 1yfq_A Cell cycle arrest prote 100.0 3.5E-29 1.2E-33 254.4 30.0 246 192-474 7-281 (342)
112 3bws_A Protein LP49; two-domai 100.0 2.4E-28 8.2E-33 257.1 31.6 297 144-474 118-431 (433)
113 2vdu_B TRNA (guanine-N(7)-)-me 100.0 4.8E-28 1.6E-32 256.5 33.8 259 197-473 5-337 (450)
114 4ggc_A P55CDC, cell division c 100.0 4E-28 1.4E-32 243.8 31.2 253 142-430 60-317 (318)
115 4gq1_A NUP37; propeller, trans 100.0 3.3E-29 1.1E-33 260.4 20.1 277 144-474 84-389 (393)
116 1p22_A F-BOX/WD-repeat protein 100.0 8.9E-28 3.1E-32 253.2 30.5 261 141-449 165-433 (435)
117 1l0q_A Surface layer protein; 100.0 4.2E-27 1.4E-31 244.0 34.6 269 162-474 3-274 (391)
118 3mmy_A MRNA export factor; mRN 100.0 1.9E-27 6.6E-32 243.6 31.4 267 191-496 34-344 (368)
119 3lrv_A PRE-mRNA-splicing facto 100.0 5.3E-28 1.8E-32 246.5 26.2 260 202-496 42-331 (343)
120 3jro_A Fusion protein of prote 100.0 3.1E-28 1.1E-32 274.2 27.0 255 191-474 4-284 (753)
121 3bws_A Protein LP49; two-domai 100.0 4.2E-27 1.4E-31 247.6 30.2 318 147-497 58-431 (433)
122 3vu4_A KMHSV2; beta-propeller 100.0 1E-26 3.5E-31 238.1 29.6 259 193-497 16-335 (355)
123 1l0q_A Surface layer protein; 100.0 1.3E-25 4.6E-30 232.7 37.7 251 144-437 27-284 (391)
124 4gq1_A NUP37; propeller, trans 99.9 1.7E-26 5.8E-31 239.9 21.1 176 248-436 87-294 (393)
125 2w18_A PALB2, fancn, partner a 99.9 7.4E-25 2.5E-29 215.5 27.3 282 151-473 41-355 (356)
126 2w18_A PALB2, fancn, partner a 99.9 2.2E-25 7.6E-30 219.2 22.6 180 217-426 156-355 (356)
127 1nir_A Nitrite reductase; hemo 99.9 1.2E-23 4.1E-28 226.9 32.9 316 156-503 144-519 (543)
128 2hqs_A Protein TOLB; TOLB, PAL 99.9 3.1E-24 1.1E-28 224.3 27.4 266 143-453 111-410 (415)
129 2ecf_A Dipeptidyl peptidase IV 99.9 5.5E-24 1.9E-28 239.8 29.9 311 149-497 36-458 (741)
130 2hqs_A Protein TOLB; TOLB, PAL 99.9 2.1E-24 7.3E-29 225.6 24.5 283 149-474 62-386 (415)
131 1nir_A Nitrite reductase; hemo 99.9 8.1E-23 2.8E-27 220.4 37.0 313 152-487 181-523 (543)
132 1ri6_A Putative isomerase YBHE 99.9 6.9E-23 2.4E-27 207.7 26.7 281 163-474 7-307 (343)
133 1ri6_A Putative isomerase YBHE 99.9 3.5E-22 1.2E-26 202.5 31.0 286 146-454 34-336 (343)
134 1k32_A Tricorn protease; prote 99.9 1.9E-22 6.6E-27 235.5 32.9 333 142-501 45-505 (1045)
135 3u4y_A Uncharacterized protein 99.9 5.6E-22 1.9E-26 200.4 31.6 281 156-474 4-303 (331)
136 2ojh_A Uncharacterized protein 99.9 1.7E-22 5.8E-27 199.8 24.6 265 166-461 17-292 (297)
137 1xfd_A DIP, dipeptidyl aminope 99.9 9.6E-23 3.3E-27 229.0 22.8 280 151-461 18-380 (723)
138 3vgz_A Uncharacterized protein 99.9 3.4E-21 1.2E-25 196.3 29.4 282 148-461 39-334 (353)
139 2z3z_A Dipeptidyl aminopeptida 99.9 9.5E-22 3.2E-26 220.3 27.2 318 152-500 28-437 (706)
140 2oit_A Nucleoporin 214KDA; NH2 99.9 2.8E-21 9.5E-26 202.8 28.9 260 148-426 35-331 (434)
141 1k32_A Tricorn protease; prote 99.9 3.2E-21 1.1E-25 225.2 30.7 289 143-460 197-491 (1045)
142 3o4h_A Acylamino-acid-releasin 99.9 1.8E-21 6.2E-26 212.9 25.9 261 148-461 20-302 (582)
143 2ecf_A Dipeptidyl peptidase IV 99.9 3.1E-21 1.1E-25 217.4 28.1 294 150-473 109-457 (741)
144 3u4y_A Uncharacterized protein 99.9 1.6E-20 5.5E-25 189.6 30.1 263 203-500 4-306 (331)
145 2z3z_A Dipeptidyl aminopeptida 99.9 8.4E-21 2.9E-25 212.6 30.7 296 150-474 82-434 (706)
146 2ojh_A Uncharacterized protein 99.9 3.9E-21 1.3E-25 189.9 24.7 239 142-409 34-290 (297)
147 3hfq_A Uncharacterized protein 99.9 8.1E-21 2.8E-25 193.4 27.5 293 163-482 4-323 (347)
148 3hfq_A Uncharacterized protein 99.9 2.9E-20 9.8E-25 189.3 30.1 274 145-433 35-324 (347)
149 3scy_A Hypothetical bacterial 99.9 5.3E-20 1.8E-24 188.5 31.9 291 148-449 48-360 (361)
150 3vgz_A Uncharacterized protein 99.9 3.1E-20 1.1E-24 189.1 29.5 275 197-511 41-329 (353)
151 3scy_A Hypothetical bacterial 99.9 1.6E-19 5.4E-24 184.9 32.5 294 162-482 14-343 (361)
152 1xfd_A DIP, dipeptidyl aminope 99.9 1.5E-20 5.3E-25 211.0 26.5 299 143-461 51-430 (723)
153 1pby_B Quinohemoprotein amine 99.9 6.8E-20 2.3E-24 185.0 27.0 270 162-474 2-309 (337)
154 2oit_A Nucleoporin 214KDA; NH2 99.9 2.5E-20 8.4E-25 195.6 21.6 224 198-429 38-279 (434)
155 1z68_A Fibroblast activation p 99.8 1.1E-19 3.8E-24 203.9 22.2 279 154-461 20-376 (719)
156 1jmx_B Amine dehydrogenase; ox 99.8 6.1E-19 2.1E-23 179.1 25.3 249 154-438 4-335 (349)
157 1pby_B Quinohemoprotein amine 99.8 7.4E-19 2.5E-23 177.4 24.2 258 209-502 2-314 (337)
158 1jof_A Carboxy-CIS,CIS-muconat 99.8 1.6E-18 5.3E-23 177.9 26.7 292 163-474 4-340 (365)
159 3pe7_A Oligogalacturonate lyas 99.8 1E-18 3.5E-23 180.5 25.4 298 142-474 23-381 (388)
160 4a5s_A Dipeptidyl peptidase 4 99.8 4.5E-18 1.6E-22 191.2 29.8 277 150-460 17-382 (740)
161 3o4h_A Acylamino-acid-releasin 99.8 1E-18 3.6E-23 191.0 21.4 255 196-496 21-313 (582)
162 1z68_A Fibroblast activation p 99.8 6.2E-18 2.1E-22 189.7 25.2 301 151-474 61-442 (719)
163 1jmx_B Amine dehydrogenase; ox 99.8 1E-17 3.6E-22 169.9 22.7 242 201-474 4-324 (349)
164 1jof_A Carboxy-CIS,CIS-muconat 99.8 2E-17 7E-22 169.6 24.6 258 148-429 38-342 (365)
165 3c5m_A Oligogalacturonate lyas 99.8 1.3E-17 4.4E-22 172.5 19.8 297 151-475 37-382 (396)
166 1q7f_A NHL, brain tumor CG1071 99.8 1.3E-15 4.3E-20 150.3 31.0 248 147-429 27-281 (286)
167 2dg1_A DRP35, lactonase; beta 99.7 3.7E-16 1.3E-20 157.8 25.8 274 150-461 6-300 (333)
168 3fvz_A Peptidyl-glycine alpha- 99.7 9.9E-16 3.4E-20 154.5 28.3 259 149-428 23-322 (329)
169 3pe7_A Oligogalacturonate lyas 99.7 6.8E-16 2.3E-20 159.2 27.6 245 202-474 41-328 (388)
170 3azo_A Aminopeptidase; POP fam 99.7 1.2E-15 3.9E-20 169.5 30.2 292 144-473 18-365 (662)
171 2oiz_A Aromatic amine dehydrog 99.7 3.8E-15 1.3E-19 152.2 28.2 277 144-453 46-360 (361)
172 1q7f_A NHL, brain tumor CG1071 99.7 1.8E-14 6.1E-19 142.0 31.7 243 197-473 30-278 (286)
173 4a5s_A Dipeptidyl peptidase 4 99.7 1.8E-15 6.2E-20 170.0 26.0 238 199-460 19-339 (740)
174 2xdw_A Prolyl endopeptidase; a 99.7 3.9E-14 1.3E-18 158.4 34.2 288 159-474 81-413 (710)
175 2z2n_A Virginiamycin B lyase; 99.7 6.9E-13 2.4E-17 131.0 39.6 274 143-458 8-283 (299)
176 3fvz_A Peptidyl-glycine alpha- 99.7 8.1E-14 2.8E-18 140.4 32.9 256 196-474 23-321 (329)
177 2oiz_A Aromatic amine dehydrog 99.7 1.6E-14 5.5E-19 147.5 27.8 289 160-484 14-342 (361)
178 2gop_A Trilobed protease; beta 99.7 1.5E-14 5.2E-19 146.7 26.5 260 149-474 14-330 (347)
179 3c5m_A Oligogalacturonate lyas 99.7 2.6E-15 8.9E-20 155.1 18.9 229 199-459 38-301 (396)
180 3azo_A Aminopeptidase; POP fam 99.6 1.8E-14 6.2E-19 159.8 25.3 242 154-433 81-374 (662)
181 2bkl_A Prolyl endopeptidase; m 99.6 2.6E-14 9E-19 159.4 26.3 285 159-474 77-396 (695)
182 3e5z_A Putative gluconolactona 99.6 1.9E-13 6.6E-18 135.3 27.8 227 197-460 28-276 (296)
183 1rwi_B Serine/threonine-protei 99.6 8.7E-14 3E-18 135.6 24.8 242 151-431 25-267 (270)
184 3e5z_A Putative gluconolactona 99.6 2E-13 6.8E-18 135.3 27.2 248 144-432 22-290 (296)
185 1qks_A Cytochrome CD1 nitrite 99.6 3.1E-12 1.1E-16 137.5 37.5 314 150-486 197-546 (567)
186 1qks_A Cytochrome CD1 nitrite 99.6 1.9E-12 6.4E-17 139.2 35.4 270 158-459 164-458 (567)
187 2dg1_A DRP35, lactonase; beta 99.6 1.2E-12 4E-17 132.0 31.7 241 143-409 38-298 (333)
188 2xdw_A Prolyl endopeptidase; a 99.6 4.2E-13 1.4E-17 150.0 29.4 254 147-430 122-416 (710)
189 2qc5_A Streptogramin B lactona 99.6 2.3E-11 7.7E-16 120.1 38.3 275 143-459 13-289 (300)
190 2gop_A Trilobed protease; beta 99.6 4E-13 1.4E-17 136.1 25.1 211 150-409 59-318 (347)
191 2bkl_A Prolyl endopeptidase; m 99.6 2.4E-13 8.3E-18 151.5 24.9 258 147-431 118-400 (695)
192 1yr2_A Prolyl oligopeptidase; 99.5 1E-12 3.5E-17 147.6 28.1 286 159-474 116-440 (741)
193 1rwi_B Serine/threonine-protei 99.5 2E-12 7E-17 125.8 26.0 239 198-475 25-264 (270)
194 3dsm_A Uncharacterized protein 99.5 6.5E-12 2.2E-16 126.4 28.8 259 150-449 44-320 (328)
195 3dsm_A Uncharacterized protein 99.5 3.4E-12 1.2E-16 128.4 26.2 277 169-483 15-306 (328)
196 3no2_A Uncharacterized protein 99.5 4.5E-12 1.5E-16 123.9 26.2 223 160-409 4-231 (276)
197 2z2n_A Virginiamycin B lyase; 99.5 1E-10 3.5E-15 115.3 36.4 239 196-473 14-253 (299)
198 3no2_A Uncharacterized protein 99.5 4.7E-12 1.6E-16 123.8 23.7 214 207-459 4-231 (276)
199 1pjx_A Dfpase, DIISOPROPYLFLUO 99.5 4.2E-11 1.4E-15 119.2 29.4 254 146-428 14-299 (314)
200 2mad_H Methylamine dehydrogena 99.5 7.1E-11 2.4E-15 120.6 30.9 252 154-435 70-357 (373)
201 1pjx_A Dfpase, DIISOPROPYLFLUO 99.4 4E-11 1.4E-15 119.4 27.5 248 198-474 19-298 (314)
202 1yr2_A Prolyl oligopeptidase; 99.4 8.4E-12 2.9E-16 140.1 24.7 254 147-430 160-443 (741)
203 2mad_H Methylamine dehydrogena 99.4 2.8E-10 9.4E-15 116.3 32.1 284 157-474 28-349 (373)
204 3g4e_A Regucalcin; six bladed 99.4 2.4E-10 8.2E-15 113.1 30.8 232 198-460 14-261 (297)
205 3sjl_D Methylamine dehydrogena 99.4 5.4E-11 1.8E-15 120.1 26.2 299 156-488 39-373 (386)
206 3sjl_D Methylamine dehydrogena 99.4 1.9E-11 6.6E-16 123.4 22.7 265 154-451 82-384 (386)
207 2qc5_A Streptogramin B lactona 99.4 9.3E-10 3.2E-14 108.4 34.8 239 196-473 19-258 (300)
208 3hrp_A Uncharacterized protein 99.4 8.6E-11 3E-15 121.7 25.6 243 150-426 131-408 (409)
209 1xip_A Nucleoporin NUP159; bet 99.4 7.7E-12 2.6E-16 126.9 15.2 176 151-364 39-232 (388)
210 2ghs_A AGR_C_1268P; regucalcin 99.4 1.6E-09 5.4E-14 108.7 32.0 227 199-460 51-291 (326)
211 1xip_A Nucleoporin NUP159; bet 99.3 3.4E-11 1.2E-15 122.1 19.2 180 252-460 39-233 (388)
212 3dr2_A Exported gluconolactona 99.3 5E-10 1.7E-14 111.2 26.6 226 198-460 46-296 (305)
213 3iuj_A Prolyl endopeptidase; h 99.3 1.1E-10 3.9E-15 129.7 23.6 254 147-431 126-408 (693)
214 3g4e_A Regucalcin; six bladed 99.3 2.3E-09 7.8E-14 106.0 29.7 242 142-410 5-261 (297)
215 3c75_H MADH, methylamine dehyd 99.3 1.5E-10 5.2E-15 119.0 20.9 252 154-435 122-409 (426)
216 3iuj_A Prolyl endopeptidase; h 99.3 9.1E-10 3.1E-14 122.4 27.9 246 195-474 127-404 (693)
217 3c75_H MADH, methylamine dehyd 99.3 5.4E-10 1.8E-14 114.9 23.1 291 159-484 82-408 (426)
218 3dr2_A Exported gluconolactona 99.3 1.3E-09 4.3E-14 108.3 25.1 232 144-409 39-295 (305)
219 2qe8_A Uncharacterized protein 99.3 5.8E-10 2E-14 112.8 22.9 241 197-458 17-308 (343)
220 2ghs_A AGR_C_1268P; regucalcin 99.2 1.7E-08 5.9E-13 101.1 32.2 237 144-409 43-290 (326)
221 3hrp_A Uncharacterized protein 99.2 5.8E-09 2E-13 107.9 29.2 206 198-433 132-359 (409)
222 2qe8_A Uncharacterized protein 99.2 3.9E-09 1.3E-13 106.7 24.3 250 150-409 17-309 (343)
223 1mda_H Methylamine dehydrogena 99.1 7.5E-10 2.6E-14 111.9 16.6 257 154-450 69-366 (368)
224 1npe_A Nidogen, entactin; glyc 99.1 1E-07 3.6E-12 92.3 27.2 257 162-453 2-263 (267)
225 2ece_A 462AA long hypothetical 99.0 4.1E-08 1.4E-12 99.8 21.8 234 159-409 93-399 (462)
226 1kb0_A Quinohemoprotein alcoho 99.0 2.6E-08 8.7E-13 109.9 21.3 284 160-460 127-539 (677)
227 2ece_A 462AA long hypothetical 98.9 1.7E-07 5.8E-12 95.3 23.1 244 260-513 93-398 (462)
228 1mda_H Methylamine dehydrogena 98.9 1.7E-08 5.7E-13 102.1 15.5 268 172-474 47-345 (368)
229 1yiq_A Quinohemoprotein alcoho 98.9 1.4E-07 4.9E-12 104.1 23.1 281 161-460 121-537 (689)
230 1fwx_A Nitrous oxide reductase 98.9 8E-08 2.7E-12 101.1 19.6 225 207-460 100-407 (595)
231 2fp8_A Strictosidine synthase; 98.9 1.6E-06 5.4E-11 86.5 28.1 258 138-427 7-312 (322)
232 2hz6_A Endoplasmic reticulum t 98.8 1.8E-09 6.2E-14 110.2 5.6 202 207-452 8-215 (369)
233 1kb0_A Quinohemoprotein alcoho 98.8 4.6E-07 1.6E-11 99.9 23.0 288 161-473 77-505 (677)
234 1fwx_A Nitrous oxide reductase 98.8 5.2E-07 1.8E-11 95.0 20.7 188 261-473 100-359 (595)
235 2fp8_A Strictosidine synthase; 98.8 4.4E-06 1.5E-10 83.2 26.9 259 199-474 21-312 (322)
236 2iwa_A Glutamine cyclotransfer 98.7 1.1E-06 3.9E-11 83.8 20.9 187 252-461 22-226 (266)
237 1yiq_A Quinohemoprotein alcoho 98.7 7.4E-07 2.5E-11 98.4 22.2 290 161-474 70-504 (689)
238 1npe_A Nidogen, entactin; glyc 98.7 1.2E-05 4E-10 77.7 27.3 240 209-485 2-245 (267)
239 2hz6_A Endoplasmic reticulum t 98.6 8.2E-09 2.8E-13 105.3 3.0 177 264-474 10-191 (369)
240 3q7m_A Lipoprotein YFGL, BAMB; 98.6 4.9E-05 1.7E-09 77.2 31.2 241 160-437 102-346 (376)
241 2p4o_A Hypothetical protein; p 98.6 2.2E-05 7.4E-10 77.5 27.5 228 198-460 33-277 (306)
242 3nok_A Glutaminyl cyclase; bet 98.6 3.2E-06 1.1E-10 79.7 19.8 183 253-460 57-254 (268)
243 3q7m_A Lipoprotein YFGL, BAMB; 98.6 1.4E-05 4.7E-10 81.4 26.4 270 161-474 53-336 (376)
244 3hxj_A Pyrrolo-quinoline quino 98.6 1.7E-06 5.7E-11 86.3 19.1 255 149-460 59-313 (330)
245 3nol_A Glutamine cyclotransfer 98.6 2.9E-06 9.8E-11 80.0 18.6 184 252-460 44-244 (262)
246 2xe4_A Oligopeptidase B; hydro 98.6 1.3E-05 4.6E-10 89.5 26.4 235 198-460 175-443 (751)
247 1k3i_A Galactose oxidase precu 98.6 4.1E-06 1.4E-10 92.2 21.8 281 154-460 190-530 (656)
248 4a2l_A BT_4663, two-component 98.5 0.0002 6.8E-09 80.7 36.0 281 149-458 214-515 (795)
249 3hxj_A Pyrrolo-quinoline quino 98.5 3.4E-06 1.2E-10 83.9 19.0 266 154-484 24-289 (330)
250 2p4o_A Hypothetical protein; p 98.5 8.2E-05 2.8E-09 73.3 27.6 234 150-409 32-276 (306)
251 3v64_C Agrin; beta propeller, 98.5 0.00012 4.2E-09 73.5 28.6 247 150-437 34-284 (349)
252 3mbr_X Glutamine cyclotransfer 98.5 1.7E-05 6E-10 74.0 20.3 186 251-460 21-223 (243)
253 2xbg_A YCF48-like protein; pho 98.5 0.00083 2.8E-08 66.7 34.1 272 149-460 35-311 (327)
254 3qqz_A Putative uncharacterize 98.4 0.00015 5.2E-09 68.6 26.6 208 246-472 22-250 (255)
255 4a2l_A BT_4663, two-component 98.4 0.00064 2.2E-08 76.5 36.7 274 149-460 356-649 (795)
256 2iwa_A Glutamine cyclotransfer 98.4 2E-05 6.8E-10 75.2 20.1 198 198-429 22-238 (266)
257 3v9f_A Two-component system se 98.4 0.00038 1.3E-08 78.2 34.2 275 149-458 312-600 (781)
258 1ijq_A LDL receptor, low-densi 98.4 0.00045 1.5E-08 68.3 30.5 224 214-474 6-237 (316)
259 1ijq_A LDL receptor, low-densi 98.4 0.0011 3.7E-08 65.6 32.1 229 170-436 9-246 (316)
260 1kv9_A Type II quinohemoprotei 98.4 4.5E-05 1.5E-09 83.9 23.9 279 161-459 117-519 (668)
261 2ad6_A Methanol dehydrogenase 98.3 0.00014 4.7E-09 78.3 26.0 257 161-438 115-504 (571)
262 3p5b_L Low density lipoprotein 98.3 0.0013 4.3E-08 67.4 31.6 243 170-450 91-342 (400)
263 3tc9_A Hypothetical hydrolase; 98.3 0.00019 6.3E-09 74.4 25.5 155 198-375 138-300 (430)
264 3v65_B Low-density lipoprotein 98.3 0.00044 1.5E-08 70.5 27.8 245 152-437 79-327 (386)
265 1kv9_A Type II quinohemoprotei 98.3 6.6E-05 2.3E-09 82.5 23.0 290 161-474 66-487 (668)
266 3qqz_A Putative uncharacterize 98.3 0.00049 1.7E-08 65.1 25.9 207 197-427 27-252 (255)
267 4hw6_A Hypothetical protein, I 98.3 0.0007 2.4E-08 70.0 29.5 202 198-431 140-376 (433)
268 4hw6_A Hypothetical protein, I 98.3 0.00024 8.3E-09 73.5 25.8 244 151-427 140-432 (433)
269 3sov_A LRP-6, low-density lipo 98.3 0.001 3.5E-08 65.7 28.8 225 214-473 9-236 (318)
270 3v64_C Agrin; beta propeller, 98.2 0.0023 8E-08 64.0 31.2 232 201-472 38-272 (349)
271 3v65_B Low-density lipoprotein 98.2 0.00082 2.8E-08 68.5 28.1 221 214-472 92-315 (386)
272 2xe4_A Oligopeptidase B; hydro 98.2 0.00012 4.3E-09 81.6 23.8 197 248-460 170-386 (751)
273 3v9f_A Two-component system se 98.2 0.0037 1.3E-07 70.1 35.9 284 150-459 211-513 (781)
274 1w6s_A Methanol dehydrogenase 98.2 0.00044 1.5E-08 74.4 26.7 274 163-459 123-534 (599)
275 3p5b_L Low density lipoprotein 98.2 0.0023 7.8E-08 65.5 30.2 226 211-472 85-317 (400)
276 3nol_A Glutamine cyclotransfer 98.2 8.7E-05 3E-09 69.9 17.7 186 151-365 44-244 (262)
277 1flg_A Protein (quinoprotein e 98.2 0.00098 3.4E-08 71.7 28.4 172 273-460 291-548 (582)
278 3kya_A Putative phosphatase; s 98.1 0.0015 5.3E-08 67.8 28.0 163 198-375 140-340 (496)
279 2ad6_A Methanol dehydrogenase 98.1 0.0022 7.5E-08 68.9 29.0 155 208-379 115-338 (571)
280 1w6s_A Methanol dehydrogenase 98.1 0.0011 3.6E-08 71.5 26.0 202 161-379 62-345 (599)
281 3sov_A LRP-6, low-density lipo 98.1 0.0023 7.7E-08 63.2 26.5 232 170-437 12-247 (318)
282 1k3i_A Galactose oxidase precu 98.1 7.4E-05 2.5E-09 82.2 17.3 240 201-461 190-476 (656)
283 3nok_A Glutaminyl cyclase; bet 98.1 0.00019 6.4E-09 67.7 17.3 181 199-409 57-253 (268)
284 3m0c_C LDL receptor, low-densi 98.1 0.0037 1.3E-07 69.4 30.7 235 169-436 402-640 (791)
285 2ism_A Putative oxidoreductase 98.0 0.0024 8.3E-08 64.0 26.4 241 149-409 30-333 (352)
286 3kya_A Putative phosphatase; s 98.0 0.0011 3.9E-08 68.8 24.3 259 151-433 140-480 (496)
287 2p9w_A MAL S 1 allergenic prot 98.0 0.0018 6.1E-08 63.1 23.4 214 199-432 15-269 (334)
288 3tc9_A Hypothetical hydrolase; 98.0 0.00033 1.1E-08 72.5 19.5 156 301-474 138-300 (430)
289 3mbr_X Glutamine cyclotransfer 98.0 0.00054 1.8E-08 64.0 18.6 182 198-409 22-222 (243)
290 2p9w_A MAL S 1 allergenic prot 97.9 0.00066 2.3E-08 66.2 19.3 166 252-429 14-216 (334)
291 3m0c_C LDL receptor, low-densi 97.9 0.0064 2.2E-07 67.5 29.8 225 212-472 398-629 (791)
292 2ism_A Putative oxidoreductase 97.9 0.0057 2E-07 61.3 27.0 154 198-364 32-221 (352)
293 1flg_A Protein (quinoprotein e 97.9 0.0031 1.1E-07 67.8 25.9 161 208-379 117-358 (582)
294 1n7d_A LDL receptor, low-densi 97.9 9.5E-05 3.3E-09 81.5 14.1 235 170-437 385-623 (699)
295 3a9g_A Putative uncharacterize 97.9 0.012 4E-07 59.0 27.8 245 149-409 28-330 (354)
296 2xzh_A Clathrin heavy chain 1; 97.8 0.026 9E-07 54.4 27.5 231 171-439 49-301 (365)
297 2xbg_A YCF48-like protein; pho 97.8 0.018 6.3E-07 56.9 28.2 237 149-426 79-320 (327)
298 2g8s_A Glucose/sorbosone dehyd 97.7 0.008 2.7E-07 60.2 24.3 154 199-362 20-214 (353)
299 3sre_A PON1, serum paraoxonase 97.7 0.0025 8.6E-08 63.4 20.0 193 252-460 51-286 (355)
300 3a9g_A Putative uncharacterize 97.7 0.024 8.3E-07 56.7 26.9 236 198-457 30-328 (354)
301 1n7d_A LDL receptor, low-densi 97.7 0.00014 4.7E-09 80.3 11.0 184 215-429 383-572 (699)
302 3s94_A LRP-6, low-density lipo 97.7 0.1 3.5E-06 56.3 34.4 283 145-460 79-411 (619)
303 4a0p_A LRP6, LRP-6, low-densit 97.6 0.11 3.6E-06 56.3 33.2 228 169-436 13-245 (628)
304 3sre_A PON1, serum paraoxonase 97.6 0.014 4.7E-07 58.1 22.8 234 199-456 52-329 (355)
305 3amr_A 3-phytase; beta-propell 97.6 0.012 4E-07 57.9 21.7 209 208-438 40-274 (355)
306 3s94_A LRP-6, low-density lipo 97.5 0.023 7.8E-07 61.5 24.9 226 213-473 13-241 (619)
307 2g8s_A Glucose/sorbosone dehyd 97.5 0.073 2.5E-06 53.1 27.0 247 149-408 17-340 (353)
308 4a0p_A LRP6, LRP-6, low-densit 97.5 0.073 2.5E-06 57.6 28.8 221 214-472 11-234 (628)
309 3amr_A 3-phytase; beta-propell 97.5 0.015 5.2E-07 57.1 20.7 186 264-474 41-262 (355)
310 1bpo_A Protein (clathrin); cla 97.4 0.14 4.8E-06 51.4 31.1 231 171-439 48-300 (494)
311 2vpj_A Kelch-like protein 12; 97.3 0.02 6.9E-07 55.6 20.6 238 160-431 14-281 (301)
312 3das_A Putative oxidoreductase 97.3 0.15 5.1E-06 50.4 25.8 258 145-409 27-326 (347)
313 3pbp_A Nucleoporin NUP82; beta 97.3 0.024 8.3E-07 56.9 19.8 163 159-327 30-209 (452)
314 3ei3_A DNA damage-binding prot 97.2 0.24 8.2E-06 57.5 30.3 154 255-428 836-999 (1158)
315 3ii7_A Kelch-like protein 7; p 97.1 0.051 1.7E-06 52.9 21.1 235 162-431 13-275 (306)
316 2xn4_A Kelch-like protein 2; s 97.1 0.035 1.2E-06 53.9 19.8 197 207-431 61-279 (302)
317 3das_A Putative oxidoreductase 97.1 0.28 9.6E-06 48.4 27.5 155 199-363 34-219 (347)
318 1zgk_A Kelch-like ECH-associat 97.0 0.065 2.2E-06 52.2 20.6 240 159-431 23-290 (308)
319 3ei3_A DNA damage-binding prot 97.0 0.22 7.5E-06 57.8 27.1 235 194-460 511-756 (1158)
320 3pbp_A Nucleoporin NUP82; beta 96.8 0.076 2.6E-06 53.3 18.8 150 265-424 34-208 (452)
321 1bpo_A Protein (clathrin); cla 96.7 0.35 1.2E-05 48.6 22.2 189 170-375 124-330 (494)
322 3ii7_A Kelch-like protein 7; p 96.5 0.46 1.6E-05 45.9 21.9 193 211-431 15-228 (306)
323 3sbq_A Nitrous-oxide reductase 96.5 0.61 2.1E-05 48.4 22.7 76 347-429 324-409 (638)
324 2uvk_A YJHT; unknown function, 96.4 0.25 8.5E-06 49.1 19.7 155 273-438 168-352 (357)
325 1xi4_A Clathrin heavy chain; a 96.4 0.19 6.4E-06 58.2 20.0 230 171-438 48-299 (1630)
326 4asc_A Kelch repeat and BTB do 96.3 0.42 1.4E-05 46.4 20.7 237 163-431 7-280 (315)
327 1cru_A Protein (soluble quinop 96.3 1.3 4.3E-05 45.7 30.8 114 149-270 26-162 (454)
328 1zgk_A Kelch-like ECH-associat 96.2 0.91 3.1E-05 43.8 22.4 152 264-431 72-243 (308)
329 2vpj_A Kelch-like protein 12; 96.2 0.96 3.3E-05 43.4 24.3 188 218-432 31-235 (301)
330 3s25_A Hypothetical 7-bladed b 96.1 0.41 1.4E-05 46.3 19.1 200 206-460 23-242 (302)
331 2xn4_A Kelch-like protein 2; s 96.1 0.14 4.9E-06 49.5 16.0 189 160-376 61-276 (302)
332 2xzh_A Clathrin heavy chain 1; 96.1 1.1 3.7E-05 43.3 24.5 208 150-376 107-332 (365)
333 1cru_A Protein (soluble quinop 96.1 0.31 1.1E-05 50.3 19.0 112 199-318 29-162 (454)
334 1tl2_A L10, protein (tachylect 96.0 0.67 2.3E-05 42.1 18.1 163 197-375 41-207 (236)
335 4asc_A Kelch repeat and BTB do 95.5 0.6 2.1E-05 45.3 17.7 136 218-376 117-277 (315)
336 3l6v_A GYRA, DNA gyrase subuni 95.1 2.9 0.0001 41.5 27.9 216 157-376 3-265 (370)
337 1tl2_A L10, protein (tachylect 95.1 0.21 7.3E-06 45.3 11.5 112 251-370 41-157 (236)
338 2woz_A Kelch repeat and BTB do 95.1 2.2 7.4E-05 41.3 20.3 156 264-432 111-291 (318)
339 4hvt_A Ritya.17583.B, post-pro 95.1 4.8 0.00017 43.9 26.2 250 199-473 131-428 (711)
340 3uc1_A DNA gyrase subunit A; D 95.0 2.9 9.8E-05 40.8 26.6 211 162-376 4-228 (327)
341 3ott_A Two-component system se 94.8 6.1 0.00021 43.6 35.2 279 150-460 324-616 (758)
342 2zwa_A Leucine carboxyl methyl 94.7 0.92 3.1E-05 49.7 17.7 203 159-377 396-636 (695)
343 3ott_A Two-component system se 94.6 7 0.00024 43.1 36.0 272 150-459 146-436 (758)
344 2wg3_C Hedgehog-interacting pr 94.5 4.9 0.00017 41.3 29.1 113 199-319 16-158 (463)
345 2woz_A Kelch repeat and BTB do 94.3 2 7E-05 41.5 17.8 147 207-376 109-287 (318)
346 2uvk_A YJHT; unknown function, 94.2 1.8 6.2E-05 42.7 17.4 53 322-378 286-344 (357)
347 3s25_A Hypothetical 7-bladed b 94.0 4.6 0.00016 38.8 23.2 204 201-460 57-281 (302)
348 2zwa_A Leucine carboxyl methyl 93.6 2.1 7.1E-05 46.9 17.8 212 207-432 397-639 (695)
349 2be1_A Serine/threonine-protei 93.6 0.3 1E-05 47.9 9.9 200 209-433 11-236 (339)
350 1zi0_A DNA gyrase subunit A; b 93.2 6.4 0.00022 37.9 27.5 212 160-376 2-226 (307)
351 3b7f_A Glycosyl hydrolase, BNR 92.8 8.5 0.00029 38.4 23.2 233 162-408 23-296 (394)
352 2wg3_C Hedgehog-interacting pr 92.5 11 0.00037 38.7 29.4 58 150-207 14-79 (463)
353 1suu_A DNA gyrase subunit A; t 91.8 9.7 0.00033 36.7 29.5 213 159-376 6-231 (312)
354 1xi4_A Clathrin heavy chain; a 91.2 10 0.00034 44.3 19.3 149 170-331 124-290 (1630)
355 3b7f_A Glycosyl hydrolase, BNR 91.2 13 0.00044 37.0 30.8 282 149-449 54-391 (394)
356 1wp5_A Topoisomerase IV; broke 90.9 12 0.00042 36.2 26.2 212 159-376 3-225 (323)
357 2be1_A Serine/threonine-protei 89.0 1.9 6.5E-05 42.2 10.0 114 312-438 11-140 (339)
358 3q6k_A 43.2 kDa salivary prote 88.9 19 0.00066 35.6 20.7 146 274-428 124-306 (381)
359 3sbq_A Nitrous-oxide reductase 86.7 6.6 0.00023 40.9 12.4 109 302-410 325-454 (638)
360 4hvt_A Ritya.17583.B, post-pro 85.6 44 0.0015 36.3 20.9 104 319-427 318-429 (711)
361 2cn3_A Xyloglucanase, beta-1,4 84.4 51 0.0018 36.0 27.7 200 198-408 24-261 (737)
362 3kci_A Probable E3 ubiquitin-p 79.3 52 0.0018 32.5 28.4 207 162-375 63-292 (389)
363 4gq2_M Nucleoporin NUP120; bet 73.1 51 0.0018 37.2 15.2 39 392-437 237-275 (950)
364 1sqj_A OXG-RCBH, oligoxylogluc 70.0 1.3E+02 0.0046 32.9 26.1 165 149-323 14-194 (789)
365 3no0_A DNA gyrase subunit A; D 70.0 72 0.0025 29.8 19.9 171 149-329 67-245 (276)
366 4gq2_M Nucleoporin NUP120; bet 68.9 81 0.0028 35.6 15.7 34 198-231 237-270 (950)
367 3no0_A DNA gyrase subunit A; D 67.3 82 0.0028 29.4 23.9 168 195-376 22-196 (276)
368 1sqj_A OXG-RCBH, oligoxylogluc 67.1 1.5E+02 0.0052 32.5 26.3 164 191-366 9-190 (789)
369 3zwu_A Alkaline phosphatase PH 66.7 19 0.00067 38.0 9.3 68 393-460 478-550 (592)
370 3q6k_A 43.2 kDa salivary prote 65.3 1.1E+02 0.0038 30.2 23.1 158 250-409 151-342 (381)
371 3qhy_B Beta-lactamase inhibito 64.7 92 0.0032 29.1 21.8 183 151-377 25-208 (282)
372 3uc1_A DNA gyrase subunit A; D 62.6 1.1E+02 0.0038 29.4 21.9 174 149-329 95-278 (327)
373 2cn3_A Xyloglucanase, beta-1,4 58.8 2E+02 0.007 31.1 32.1 165 150-317 72-261 (737)
374 4a9v_A PHOX; hydrolase, beta-p 58.6 30 0.001 36.2 8.7 69 393-461 478-551 (592)
375 1suu_A DNA gyrase subunit A; t 57.6 1.3E+02 0.0045 28.6 23.5 187 264-460 9-220 (312)
376 3zwu_A Alkaline phosphatase PH 53.1 29 0.001 36.6 7.7 60 348-409 478-549 (592)
377 1wp5_A Topoisomerase IV; broke 45.6 2.1E+02 0.0071 27.3 19.7 174 150-329 93-276 (323)
378 1zvt_A Topoisomerase IV subuni 44.7 1.9E+02 0.0064 26.6 15.5 156 163-329 4-162 (256)
379 4fhn_B Nucleoporin NUP120; pro 43.1 51 0.0017 38.2 8.4 38 393-437 240-277 (1139)
380 4a9v_A PHOX; hydrolase, beta-p 37.0 1E+02 0.0035 32.2 8.6 62 347-410 477-550 (592)
381 4fhn_B Nucleoporin NUP120; pro 36.1 48 0.0016 38.3 6.8 32 347-378 239-270 (1139)
382 3l6v_A GYRA, DNA gyrase subuni 33.5 3.5E+02 0.012 26.4 23.8 179 260-450 5-209 (370)
383 3mvd_K Regulator of chromosome 31.8 3.8E+02 0.013 26.3 27.1 209 152-375 77-321 (423)
384 2zux_A YESW protein; beta-prop 31.2 4.7E+02 0.016 27.2 22.3 52 218-274 151-202 (591)
385 3a0f_A Xyloglucanase; beta-pro 30.6 5.5E+02 0.019 27.8 28.6 171 194-367 18-203 (763)
386 1zvt_A Topoisomerase IV subuni 29.9 3.2E+02 0.011 24.9 15.4 137 313-460 4-152 (256)
387 3f7f_A Nucleoporin NUP120; nuc 29.2 73 0.0025 34.3 6.1 37 392-437 223-259 (729)
388 3qhy_B Beta-lactamase inhibito 26.3 3.9E+02 0.013 24.7 21.9 182 151-376 64-246 (282)
389 3mez_B Mannose-specific lectin 26.2 2.3E+02 0.0078 22.0 9.8 46 444-495 59-105 (113)
390 2q2k_A Hypothetical protein; p 25.5 27 0.00092 23.0 1.2 17 574-590 54-70 (70)
391 3a0f_A Xyloglucanase; beta-pro 25.0 6.8E+02 0.023 27.0 29.5 165 147-321 18-203 (763)
392 3kci_A Probable E3 ubiquitin-p 24.4 4.9E+02 0.017 25.2 25.9 217 151-376 106-345 (389)
393 3f7f_A Nucleoporin NUP120; nuc 23.1 86 0.003 33.8 5.3 30 150-181 222-251 (729)
394 4d9s_A UVB-resistance protein 22.2 5.5E+02 0.019 25.0 30.0 254 155-424 71-353 (406)
395 3al9_A Plexin-A2; beta-propell 21.4 1.4E+02 0.0049 30.9 6.6 74 149-222 399-476 (539)
No 1
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=2.4e-41 Score=345.04 Aligned_cols=297 Identities=20% Similarity=0.251 Sum_probs=249.1
Q ss_pred CCcceEEecCCcccEEEEEECCCCCEEEEEEcCCcEEEEeCCCCccccccceecCCCCCCceEEEEecCCCCeEEEEeCC
Q 048012 138 PMSNEIVLKGHTKIVSALAVDHSGSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSDRFLCVTGS 217 (616)
Q Consensus 138 p~~~~~~l~~H~~~V~~v~~sp~g~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~s~d 217 (616)
+.....+|.+|...|++++|+|++++|++|+.||+|+|||+.+... ......+...|.+++|+|++++|++++.|
T Consensus 44 ~~~~~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~-----~~~~~~~~~~v~~~~~s~~~~~l~s~~~d 118 (340)
T 1got_B 44 QMRTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNK-----VHAIPLRSSWVMTCAYAPSGNYVACGGLD 118 (340)
T ss_dssp CCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCE-----EEEEECSSSCEEEEEECTTSSEEEEEETT
T ss_pred cchhheeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCc-----ceEeecCCccEEEEEECCCCCEEEEEeCC
Confidence 4455678999999999999999999999999999999999876532 12223567789999999999999999999
Q ss_pred CeEEEEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEEEECCCccccceEEeeeccCC
Q 048012 218 AQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARP 297 (616)
Q Consensus 218 ~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~ 297 (616)
+.|++|++...... ......+.+|...|.++.|++++ .|++++.|++|++||+.++.....+ .+
T Consensus 119 ~~v~iw~~~~~~~~--------~~~~~~~~~h~~~v~~~~~~~~~--~l~s~s~d~~i~~wd~~~~~~~~~~------~~ 182 (340)
T 1got_B 119 NICSIYNLKTREGN--------VRVSRELAGHTGYLSCCRFLDDN--QIVTSSGDTTCALWDIETGQQTTTF------TG 182 (340)
T ss_dssp CEEEEEETTTCSBS--------CEEEEEEECCSSCEEEEEEEETT--EEEEEETTSCEEEEETTTTEEEEEE------CC
T ss_pred CeEEEEECccCCCc--------ceeEEEecCCCccEEEEEECCCC--cEEEEECCCcEEEEECCCCcEEEEE------cC
Confidence 99999998764310 01133457899999999999874 6999999999999999886554333 35
Q ss_pred CCccEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCCCCCceeeecCCCCCeEEEEEcCCCCeEEEEecCCcEEEEeCCCC
Q 048012 298 GRVAVTTCAWDCDGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHSDDITALKFSSDGRILLSRSFDGSLKVWDLRKM 377 (616)
Q Consensus 298 ~~~~v~~~~~sp~g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~v~lwd~~~~ 377 (616)
|...|.+++|+|++++|++|+.||+|++||++++ .....+.+|...|++|+|+|++++|++++.|++|+|||++..
T Consensus 183 h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~----~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~ 258 (340)
T 1got_B 183 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREG----MCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRAD 258 (340)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTC----SEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT
T ss_pred CCCceEEEEECCCCCEEEEEeCCCcEEEEECCCC----eeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCC
Confidence 6668999999999999999999999999999976 577888999999999999999999999999999999999864
Q ss_pred CCcceEecCCCCCCcceeEEECCCCCEEEEeeccccccCCCceEEEEeCCCCceEEEEecCCCCCeEEEEEcCCCCcEEE
Q 048012 378 KEPLKVFEDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREKLELVSRVGISPACSVVQCAWHPKLNQIFA 457 (616)
Q Consensus 378 ~~~~~~~~~~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~ 457 (616)
. .+..+........|++++|+|++++|++|+ .||.|+|||+.+++.+..+.. |...|.+++|+|++..|++
T Consensus 259 ~-~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~-------~d~~i~vwd~~~~~~~~~~~~-h~~~v~~~~~s~dg~~l~s 329 (340)
T 1got_B 259 Q-ELMTYSHDNIICGITSVSFSKSGRLLLAGY-------DDFNCNVWDALKADRAGVLAG-HDNRVSCLGVTDDGMAVAT 329 (340)
T ss_dssp E-EEEEECCTTCCSCEEEEEECTTSSEEEEEE-------TTSEEEEEETTTCCEEEEEEC-CSSCEEEEEECTTSSCEEE
T ss_pred c-EEEEEccCCcccceEEEEECCCCCEEEEEC-------CCCeEEEEEcccCcEeeEeec-CCCcEEEEEEcCCCCEEEE
Confidence 3 344443333345699999999999999999 899999999999999888864 7788999999999888888
Q ss_pred EeccCCCCceEEEec
Q 048012 458 TAGDKSQGGTHILYD 472 (616)
Q Consensus 458 ~~~d~~~~~~~~v~~ 472 (616)
++. ++.++||+
T Consensus 330 ~s~----D~~i~iWd 340 (340)
T 1got_B 330 GSW----DSFLKIWN 340 (340)
T ss_dssp EET----TSCEEEEC
T ss_pred EcC----CccEEecC
Confidence 886 66788875
No 2
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=1.6e-41 Score=355.50 Aligned_cols=289 Identities=18% Similarity=0.297 Sum_probs=250.7
Q ss_pred eEEecCCcccEEEEEECCCCCEEEEEEcCCcEEEEeCCCCccccccceecCCCCCCceEEEEecCCCCeEEEEeCCCeEE
Q 048012 142 EIVLKGHTKIVSALAVDHSGSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSDRFLCVTGSAQAK 221 (616)
Q Consensus 142 ~~~l~~H~~~V~~v~~sp~g~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~s~d~~v~ 221 (616)
...+.+|...|++++|+|++.+|++|+.||+|+|||+.++. .......|...|.+++|+|++++|++++.|+.|+
T Consensus 101 ~~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~-----~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~ 175 (410)
T 1vyh_C 101 KYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGD-----FERTLKGHTDSVQDISFDHSGKLLASCSADMTIK 175 (410)
T ss_dssp SCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCC-----CCEEECCCSSCEEEEEECTTSSEEEEEETTSCCC
T ss_pred eEeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc-----EEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEE
Confidence 45688999999999999999999999999999999998753 2223346778899999999999999999999999
Q ss_pred EEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEEEECCCccccceEEeeeccCCCCcc
Q 048012 222 IYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPGRVA 301 (616)
Q Consensus 222 vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~ 301 (616)
|||+.+... +..+.+|...|.+++|+|++ .+|++|+.|++|++||+.++.+...+. +|...
T Consensus 176 iwd~~~~~~------------~~~~~~h~~~V~~v~~~p~~-~~l~s~s~D~~i~~wd~~~~~~~~~~~------~h~~~ 236 (410)
T 1vyh_C 176 LWDFQGFEC------------IRTMHGHDHNVSSVSIMPNG-DHIVSASRDKTIKMWEVQTGYCVKTFT------GHREW 236 (410)
T ss_dssp EEETTSSCE------------EECCCCCSSCEEEEEECSSS-SEEEEEETTSEEEEEETTTCCEEEEEE------CCSSC
T ss_pred EEeCCCCce------------eEEEcCCCCCEEEEEEeCCC-CEEEEEeCCCeEEEEECCCCcEEEEEe------CCCcc
Confidence 999987653 44568999999999999987 599999999999999999876554432 45558
Q ss_pred EEEEEECCCCCeEEEEeCCCcEEEEeCCCCCCCCCceeeecCCCCCeEEEEEcCC--------------------CCeEE
Q 048012 302 VTTCAWDCDGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHSDDITALKFSSD--------------------GRILL 361 (616)
Q Consensus 302 v~~~~~sp~g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~spd--------------------g~~l~ 361 (616)
|.++.|++++++|++|+.||+|++||++++ .....+.+|...|.+++|+|+ +.+|+
T Consensus 237 v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~----~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~ 312 (410)
T 1vyh_C 237 VRMVRPNQDGTLIASCSNDQTVRVWVVATK----ECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLL 312 (410)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEETTTC----CEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEE
T ss_pred EEEEEECCCCCEEEEEcCCCeEEEEECCCC----ceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEE
Confidence 999999999999999999999999999876 567788899999999999996 67899
Q ss_pred EEecCCcEEEEeCCCCCCcceEecCCCCCCcceeEEECCCCCEEEEeeccccccCCCceEEEEeCCCCceEEEEecCCCC
Q 048012 362 SRSFDGSLKVWDLRKMKEPLKVFEDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREKLELVSRVGISPAC 441 (616)
Q Consensus 362 s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 441 (616)
+++.|++|+|||++++ .++..+.. +...|++++|+|++++|++|+ .||.|+|||+.+++++..+.. |..
T Consensus 313 sgs~D~~i~iwd~~~~-~~~~~~~~--h~~~v~~v~~~~~g~~l~s~s-------~D~~i~vwd~~~~~~~~~~~~-h~~ 381 (410)
T 1vyh_C 313 SGSRDKTIKMWDVSTG-MCLMTLVG--HDNWVRGVLFHSGGKFILSCA-------DDKTLRVWDYKNKRCMKTLNA-HEH 381 (410)
T ss_dssp EEETTSEEEEEETTTT-EEEEEEEC--CSSCEEEEEECSSSSCEEEEE-------TTTEEEEECCTTSCCCEEEEC-CSS
T ss_pred EEeCCCeEEEEECCCC-ceEEEEEC--CCCcEEEEEEcCCCCEEEEEe-------CCCeEEEEECCCCceEEEEcC-CCC
Confidence 9999999999999875 34555555 445699999999999999999 899999999999999988874 677
Q ss_pred CeEEEEEcCCCCcEEEEeccCCCCceEEEecc
Q 048012 442 SVVQCAWHPKLNQIFATAGDKSQGGTHILYDP 473 (616)
Q Consensus 442 ~v~~~~~~p~~~~l~~~~~d~~~~~~~~v~~~ 473 (616)
.|++++|+|++++|++++. ++.++||++
T Consensus 382 ~v~~l~~~~~~~~l~sgs~----D~~i~vW~~ 409 (410)
T 1vyh_C 382 FVTSLDFHKTAPYVVTGSV----DQTVKVWEC 409 (410)
T ss_dssp CEEEEEECSSSSCEEEEET----TSEEEEEC-
T ss_pred cEEEEEEcCCCCEEEEEeC----CCcEEEEeC
Confidence 8999999999999888887 778888875
No 3
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=1.6e-41 Score=374.22 Aligned_cols=333 Identities=21% Similarity=0.265 Sum_probs=264.2
Q ss_pred ceEEecCCcccEEEEEECCCCCEEEEEEcCCcEEEEeCCCCccccccceecCCCCCCceEEEEecCCCCeEEEEeCC---
Q 048012 141 NEIVLKGHTKIVSALAVDHSGSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSDRFLCVTGS--- 217 (616)
Q Consensus 141 ~~~~l~~H~~~V~~v~~sp~g~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~s~d--- 217 (616)
....|.+|...|++++|+|+|++||+|+.|++|+|||+...... .......|...|.+++|+|++++|++++.+
T Consensus 51 ~~~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~---~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~ 127 (611)
T 1nr0_A 51 DTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHI---LKTTIPVFSGPVKDISWDSESKRIAAVGEGRER 127 (611)
T ss_dssp CCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCC---EEEEEECSSSCEEEEEECTTSCEEEEEECCSSC
T ss_pred cCeEecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcce---eeEeecccCCceEEEEECCCCCEEEEEECCCCc
Confidence 34578899999999999999999999999999999998653221 112233567789999999999999988865
Q ss_pred -CeEEEEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEEEECCCccccceEEeeeccC
Q 048012 218 -AQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLAR 296 (616)
Q Consensus 218 -~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~ 296 (616)
+.|++||... ....+.+|...|++++|+|++..+|++|+.|++|++||....+....+ .
T Consensus 128 ~~~v~~wd~~~--------------~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l------~ 187 (611)
T 1nr0_A 128 FGHVFLFDTGT--------------SNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTF------G 187 (611)
T ss_dssp SEEEEETTTCC--------------BCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEE------C
T ss_pred eeEEEEeeCCC--------------CcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeee------c
Confidence 3677777432 134578999999999999988768999999999999998765443322 3
Q ss_pred CCCccEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCCCCCceeeec-------CCCCCeEEEEEcCCCCeEEEEecCCcE
Q 048012 297 PGRVAVTTCAWDCDGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEK-------GHSDDITALKFSSDGRILLSRSFDGSL 369 (616)
Q Consensus 297 ~~~~~v~~~~~sp~g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~-------~h~~~V~~l~~spdg~~l~s~s~Dg~v 369 (616)
+|...|.+++|+|+|++|++|+.||+|+|||+.++ .....+. +|...|.+|+|+|++++|++++.|++|
T Consensus 188 ~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g----~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v 263 (611)
T 1nr0_A 188 EHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDG----TKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTI 263 (611)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTC----CEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEE
T ss_pred cccCceEEEEECCCCCEEEEEECCCcEEEEECCCC----cEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeE
Confidence 56678999999999999999999999999999876 3444442 799999999999999999999999999
Q ss_pred EEEeCCCCCCcceEec-----------------------------------------CCCCCCcceeEEECCCCCEEEEe
Q 048012 370 KVWDLRKMKEPLKVFE-----------------------------------------DLPNNYAQTNVAFSPDEQLFLTG 408 (616)
Q Consensus 370 ~lwd~~~~~~~~~~~~-----------------------------------------~~~~~~~v~~v~fspdg~~l~~g 408 (616)
+|||++++.. +..+. ...|...|++++|+|++++|+++
T Consensus 264 ~lWd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~ 342 (611)
T 1nr0_A 264 KIWNVATLKV-EKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSA 342 (611)
T ss_dssp EEEETTTTEE-EEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEE
T ss_pred EEEeCCCCce-eeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEE
Confidence 9999986432 11110 01345679999999999999999
Q ss_pred eccccccCCCceEEEEeCCCCceEEEEecCCCCCeEEEEEcCCCCcEEEEeccCCCCceEEE------------------
Q 048012 409 TSVERESTTGGLLCFYDREKLELVSRVGISPACSVVQCAWHPKLNQIFATAGDKSQGGTHIL------------------ 470 (616)
Q Consensus 409 s~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~~~~~~~v------------------ 470 (616)
+ .|+.|++||+.++++...+...|...|.+++|++++ .|++++.| +.+++
T Consensus 343 s-------~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~-~l~s~s~d----~~v~~w~~~~~~~~~~~~~~~~~ 410 (611)
T 1nr0_A 343 D-------AEGHINSWDISTGISNRVFPDVHATMITGIKTTSKG-DLFTVSWD----DHLKVVPAGGSGVDSSKAVANKL 410 (611)
T ss_dssp E-------TTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTS-CEEEEETT----TEEEEECSSSSSSCTTSCCEEEC
T ss_pred e-------CCCcEEEEECCCCceeeecccCCcceEEEEEECCCC-cEEEEEcC----CceEEeecCCccccccceeeeec
Confidence 9 899999999999988766544466778888888664 56666553 22333
Q ss_pred -----------------------------------------ecccCCCCCcEEEEecCCcceecccccCC----------
Q 048012 471 -----------------------------------------YDPRLSERGALVCVARAPRKKSVDDFEVA---------- 499 (616)
Q Consensus 471 -----------------------------------------~~~~~s~~g~~l~s~~~d~~~~~wd~~~~---------- 499 (616)
+.++|+|+|++|++++.|+.+++||+...
T Consensus 411 ~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~~~~~~h 490 (611)
T 1nr0_A 411 SSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVH 490 (611)
T ss_dssp SSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEEEEC
T ss_pred CCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCceeeeeccCC
Confidence 34678999999999999999999997432
Q ss_pred -----ceeeCCCCCCcccC
Q 048012 500 -----PVIHNPHALPLFRD 513 (616)
Q Consensus 500 -----~~~~~p~~~~l~~~ 513 (616)
.+.|+|++..|+..
T Consensus 491 ~~~v~~v~fspdg~~las~ 509 (611)
T 1nr0_A 491 PAEITSVAFSNNGAFLVAT 509 (611)
T ss_dssp SSCEEEEEECTTSSEEEEE
T ss_pred CCceEEEEECCCCCEEEEE
Confidence 25678888777654
No 4
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=1.3e-40 Score=341.46 Aligned_cols=301 Identities=19% Similarity=0.225 Sum_probs=248.5
Q ss_pred CCCcceEEecCCcccEEEEEECCCCCEEEEEEcCCcEEEEeCCCCccccccceecCCCCCCceEEEEecCCCCeEEEEeC
Q 048012 137 IPMSNEIVLKGHTKIVSALAVDHSGSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSDRFLCVTG 216 (616)
Q Consensus 137 ~p~~~~~~l~~H~~~V~~v~~sp~g~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~s~ 216 (616)
+.......|.+|.+.|+||+|+|++++||||+.||+|+|||..+... ......+...|.+++|+|++.+|++++.
T Consensus 52 ~~~~~~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~-----~~~~~~~~~~v~~~~~sp~g~~lasg~~ 126 (354)
T 2pbi_B 52 FVMKTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNK-----EHAVTMPCTWVMACAYAPSGCAIACGGL 126 (354)
T ss_dssp CCCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCE-----EEEEECSSSCCCEEEECTTSSEEEEEST
T ss_pred cccEEEEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCc-----ceEEecCCCCEEEEEECCCCCEEEEeeC
Confidence 34456678999999999999999999999999999999999876432 1122245667999999999999999999
Q ss_pred CCeEEEEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEEEECCCccccceEEeeeccC
Q 048012 217 SAQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLAR 296 (616)
Q Consensus 217 d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~ 296 (616)
|+.+++|++........ ......+.+|...|.++.|+|++ ..|++++.|++|++||+.+++....+.
T Consensus 127 d~~i~v~~~~~~~~~~~------~~~~~~~~~h~~~v~~~~~~~~~-~~l~t~s~D~~v~lwd~~~~~~~~~~~------ 193 (354)
T 2pbi_B 127 DNKCSVYPLTFDKNENM------AAKKKSVAMHTNYLSACSFTNSD-MQILTASGDGTCALWDVESGQLLQSFH------ 193 (354)
T ss_dssp TSEEEEEECCCCTTCCS------GGGCEEEEECSSCEEEEEECSSS-SEEEEEETTSEEEEEETTTCCEEEEEE------
T ss_pred CCCEEEEEEeccccccc------cccceeeeccCCcEEEEEEeCCC-CEEEEEeCCCcEEEEeCCCCeEEEEEc------
Confidence 99999999864321000 01123346799999999999987 589999999999999998876544432
Q ss_pred CCCccEEEEEECC--CCCeEEEEeCCCcEEEEeCCCCCCCCCceeeecCCCCCeEEEEEcCCCCeEEEEecCCcEEEEeC
Q 048012 297 PGRVAVTTCAWDC--DGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHSDDITALKFSSDGRILLSRSFDGSLKVWDL 374 (616)
Q Consensus 297 ~~~~~v~~~~~sp--~g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~v~lwd~ 374 (616)
+|...|.+++|+| +|++|++|+.||+|++||++++ ..+..+.+|...|++++|+|++++|++++.|++|+|||+
T Consensus 194 ~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~----~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~ 269 (354)
T 2pbi_B 194 GHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSG----QCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDL 269 (354)
T ss_dssp CCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTC----CEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred CCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCC----cEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEEC
Confidence 4555799999987 5789999999999999999976 577888999999999999999999999999999999999
Q ss_pred CCCCCcceEecCCCCCCcceeEEECCCCCEEEEeeccccccCCCceEEEEeCCCCceEEEEecCCCCCeEEEEEcCCCCc
Q 048012 375 RKMKEPLKVFEDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREKLELVSRVGISPACSVVQCAWHPKLNQ 454 (616)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~ 454 (616)
+... .+..+........+++++|+|++++|++|+ .|+.|+|||+.+++.+..+.. |...|.+++|+|++.+
T Consensus 270 ~~~~-~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~-------~d~~i~vwd~~~~~~~~~l~~-h~~~v~~l~~spdg~~ 340 (354)
T 2pbi_B 270 RADR-EVAIYSKESIIFGASSVDFSLSGRLLFAGY-------NDYTINVWDVLKGSRVSILFG-HENRVSTLRVSPDGTA 340 (354)
T ss_dssp TTTE-EEEEECCTTCCSCEEEEEECTTSSEEEEEE-------TTSCEEEEETTTCSEEEEECC-CSSCEEEEEECTTSSC
T ss_pred CCCc-EEEEEcCCCcccceeEEEEeCCCCEEEEEE-------CCCcEEEEECCCCceEEEEEC-CCCcEEEEEECCCCCE
Confidence 8643 344444444445689999999999999999 899999999999998888764 7788999999999988
Q ss_pred EEEEeccCCCCceEEEec
Q 048012 455 IFATAGDKSQGGTHILYD 472 (616)
Q Consensus 455 l~~~~~d~~~~~~~~v~~ 472 (616)
|++++. ++.++||+
T Consensus 341 l~sgs~----D~~v~vW~ 354 (354)
T 2pbi_B 341 FCSGSW----DHTLRVWA 354 (354)
T ss_dssp EEEEET----TSEEEEEC
T ss_pred EEEEcC----CCCEEecC
Confidence 888887 67888885
No 5
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=2.5e-41 Score=350.39 Aligned_cols=309 Identities=18% Similarity=0.246 Sum_probs=245.8
Q ss_pred cceEEecCCcccEEEEEECCCCCEEEEEEcCCcEEEEeCCCCccccccceecCCCCCCceEEEEecCCCCeEEEEeCCCe
Q 048012 140 SNEIVLKGHTKIVSALAVDHSGSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSDRFLCVTGSAQ 219 (616)
Q Consensus 140 ~~~~~l~~H~~~V~~v~~sp~g~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~s~d~~ 219 (616)
....+|.+|.+.|++++|+|++++|+||+.|++|+|||+.+... ......|...|.+++|+|++++|++++.|+.
T Consensus 57 ~~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~-----~~~~~~h~~~v~~~~~s~~g~~las~~~d~~ 131 (380)
T 3iz6_a 57 VCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQK-----THAIKLHCPWVMECAFAPNGQSVACGGLDSA 131 (380)
T ss_dssp EEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEE-----EEEEECCCTTCCCCEECTTSSEEEECCSSSC
T ss_pred EEeecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcc-----ceEEecCCCCEEEEEECCCCCEEEEeeCCCc
Confidence 34567999999999999999999999999999999999876531 1222356778999999999999999999999
Q ss_pred EEEEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEEEECCCccccceEEeeeccCCCC
Q 048012 220 AKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPGR 299 (616)
Q Consensus 220 v~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~ 299 (616)
++||++....... ........+.+|...|.++.|+|++...|++|+.|++|++||+.++.....+.. ....+|.
T Consensus 132 v~iw~~~~~~~~~-----~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~-~~~~~h~ 205 (380)
T 3iz6_a 132 CSIFNLSSQADRD-----GNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGS-EFPSGHT 205 (380)
T ss_dssp CEEEECCCCSSCC-----CSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECC-CSSSSCC
T ss_pred EEEEECCCCcccc-----CCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeec-ccCCCCc
Confidence 9999987532100 001123457899999999999998777899999999999999998765543321 2224566
Q ss_pred ccEEEEEECC-CCCeEEEEeCCCcEEEEeCCCCCCCCCceeeecCCCCCeEEEEEcCCCCeEEEEecCCcEEEEeCCCCC
Q 048012 300 VAVTTCAWDC-DGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHSDDITALKFSSDGRILLSRSFDGSLKVWDLRKMK 378 (616)
Q Consensus 300 ~~v~~~~~sp-~g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~v~lwd~~~~~ 378 (616)
..|.+++|++ ++++|++|+.||+|++||++.. ...+..+.+|...|++|+|+|++++|++++.|++|+|||++++.
T Consensus 206 ~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~---~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~ 282 (380)
T 3iz6_a 206 ADVLSLSINSLNANMFISGSCDTTVRLWDLRIT---SRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGH 282 (380)
T ss_dssp SCEEEEEECSSSCCEEEEEETTSCEEEEETTTT---CCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTE
T ss_pred cCeEEEEeecCCCCEEEEEECCCeEEEEECCCC---CcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCc
Confidence 7899999987 8899999999999999999853 25677889999999999999999999999999999999999753
Q ss_pred CcceEecCCC-----CCCcceeEEECCCCCEEEEeeccccccCCCceEEEEeCCCCceEEEEe---cCCCCCeEEEEEcC
Q 048012 379 EPLKVFEDLP-----NNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREKLELVSRVG---ISPACSVVQCAWHP 450 (616)
Q Consensus 379 ~~~~~~~~~~-----~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~~~~~~~~~---~~~~~~v~~~~~~p 450 (616)
.+..+.... ....|++++|+|+|++|++|+ .||.|+|||+.+++.+..+. ..|...|.+++|+|
T Consensus 283 -~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~-------~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~ 354 (380)
T 3iz6_a 283 -QLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGY-------SNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSS 354 (380)
T ss_dssp -EEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEEC-------TTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECS
T ss_pred -EEEEecccccccccccCceEEEEECCCCCEEEEEE-------CCCCEEEEECCCCceEEEEecccCCCCCceEEEEECC
Confidence 344443322 123489999999999999999 89999999999999887773 23566777777777
Q ss_pred CCCcEEEEeccCCCCceEEEeccc
Q 048012 451 KLNQIFATAGDKSQGGTHILYDPR 474 (616)
Q Consensus 451 ~~~~l~~~~~d~~~~~~~~v~~~~ 474 (616)
++..|++++. ++.++||++.
T Consensus 355 dg~~l~sgs~----D~~i~iW~~~ 374 (380)
T 3iz6_a 355 DGSALCTGSW----DKNLKIWAFS 374 (380)
T ss_dssp SSSEEEEECT----TSCEEEEECC
T ss_pred CCCEEEEeeC----CCCEEEEecC
Confidence 7766666665 5566666654
No 6
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=2.2e-40 Score=332.39 Aligned_cols=294 Identities=14% Similarity=0.249 Sum_probs=240.9
Q ss_pred CcceEEecCCcccEEEEEECCCCCEEEEEEcCCcEEEEeCCCCccccccceecCCCCCCceEEEEecCCCCeEEEEeCCC
Q 048012 139 MSNEIVLKGHTKIVSALAVDHSGSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSDRFLCVTGSA 218 (616)
Q Consensus 139 ~~~~~~l~~H~~~V~~v~~sp~g~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~s~d~ 218 (616)
+....+|.+|.+.|++|+|+|++++|++|+.||+|+|||+.+... . .....+...|.+++|++++++|++++.|+
T Consensus 3 l~~~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~----~-~~~~~~~~~v~~~~~~~~~~~l~s~s~d~ 77 (304)
T 2ynn_A 3 LDIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVE----V-RSIQVTETPVRAGKFIARKNWIIVGSDDF 77 (304)
T ss_dssp CCCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEE----E-EEEECCSSCEEEEEEEGGGTEEEEEETTS
T ss_pred ceeEEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCce----e-EEeeccCCcEEEEEEeCCCCEEEEECCCC
Confidence 345678999999999999999999999999999999999986431 1 12234667899999999999999999999
Q ss_pred eEEEEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEEEECCCccccceEEeeeccCCC
Q 048012 219 QAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPG 298 (616)
Q Consensus 219 ~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~ 298 (616)
.|+|||+..... +..+.+|...|++++|+|++ .+|++|+.|++|++||+.+........ .+|
T Consensus 78 ~i~vwd~~~~~~------------~~~~~~h~~~v~~~~~~~~~-~~l~sgs~D~~v~lWd~~~~~~~~~~~-----~~h 139 (304)
T 2ynn_A 78 RIRVFNYNTGEK------------VVDFEAHPDYIRSIAVHPTK-PYVLSGSDDLTVKLWNWENNWALEQTF-----EGH 139 (304)
T ss_dssp EEEEEETTTCCE------------EEEEECCSSCEEEEEECSSS-SEEEEEETTSCEEEEEGGGTTEEEEEE-----CCC
T ss_pred EEEEEECCCCcE------------EEEEeCCCCcEEEEEEcCCC-CEEEEECCCCeEEEEECCCCcchhhhh-----ccc
Confidence 999999987653 33357899999999999987 599999999999999997653332222 355
Q ss_pred CccEEEEEECC-CCCeEEEEeCCCcEEEEeCCCCCCCCCceeeecCCCCCeEEEEEcC--CCCeEEEEecCCcEEEEeCC
Q 048012 299 RVAVTTCAWDC-DGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHSDDITALKFSS--DGRILLSRSFDGSLKVWDLR 375 (616)
Q Consensus 299 ~~~v~~~~~sp-~g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp--dg~~l~s~s~Dg~v~lwd~~ 375 (616)
...|.+++|+| ++.+|++|+.||+|++||++... ........|...|..+.|+| ++.+|++++.|++|+|||++
T Consensus 140 ~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~ 216 (304)
T 2ynn_A 140 EHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQST---PNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQ 216 (304)
T ss_dssp CSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSS---CSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETT
T ss_pred CCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCC---ccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCC
Confidence 66899999999 67899999999999999998652 34444556778899999987 77899999999999999998
Q ss_pred CCCCcceEecCCCCCCcceeEEECCCCCEEEEeeccccccCCCceEEEEeCCCCceEEEEecCCCCCeEEEEEcCCCCc-
Q 048012 376 KMKEPLKVFEDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREKLELVSRVGISPACSVVQCAWHPKLNQ- 454 (616)
Q Consensus 376 ~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~- 454 (616)
+. .++..+..| ...|.+++|+|++++|++|+ .||.|+|||+.+++++..+.. +...+.+++|+|++..
T Consensus 217 ~~-~~~~~~~~h--~~~v~~~~~~p~~~~l~s~s-------~Dg~i~iWd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 285 (304)
T 2ynn_A 217 TK-SCVATLEGH--MSNVSFAVFHPTLPIIISGS-------EDGTLKIWNSSTYKVEKTLNV-GLERSWCIATHPTGRKN 285 (304)
T ss_dssp TT-EEEEEEECC--SSCEEEEEECSSSSEEEEEE-------TTSCEEEEETTTCCEEEEECC-SSSSEEEEEECTTCGGG
T ss_pred CC-ccceeeCCC--CCCEEEEEECCCCCEEEEEc-------CCCeEEEEECCCCceeeeccC-CCccEEEEEECCCCCce
Confidence 64 456666654 45599999999999999999 899999999999999999875 5678999999998763
Q ss_pred -EEEEeccCCCCceEEEeccc
Q 048012 455 -IFATAGDKSQGGTHILYDPR 474 (616)
Q Consensus 455 -l~~~~~d~~~~~~~~v~~~~ 474 (616)
|+++. +....+|++.
T Consensus 286 ~~asg~-----~~g~~~~~~~ 301 (304)
T 2ynn_A 286 YIASGF-----DNGFTVLSLG 301 (304)
T ss_dssp CEEEEE-----TTEEEEEECC
T ss_pred EEEEec-----CCceEEEEec
Confidence 45444 3345555543
No 7
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=1.6e-40 Score=335.93 Aligned_cols=290 Identities=19% Similarity=0.254 Sum_probs=242.4
Q ss_pred EEecCCcccEEEEEECCC----CCEEEEEEcCCcEEEEeCCCCccccccceecCCCCCCceEEEEecCCCCeEEEEeCCC
Q 048012 143 IVLKGHTKIVSALAVDHS----GSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSDRFLCVTGSA 218 (616)
Q Consensus 143 ~~l~~H~~~V~~v~~sp~----g~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~s~d~ 218 (616)
..+.+|.+.|++|+|+++ +.+|+||+.|++|+||++..... ........|...|.+++|++++.++++++.|+
T Consensus 26 ~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~---~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~ 102 (321)
T 3ow8_A 26 KQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERL---DLQWSLEGHQLGVVSVDISHTLPIAASSSLDA 102 (321)
T ss_dssp EETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEE---EEEEEECCCSSCEEEEEECSSSSEEEEEETTS
T ss_pred eecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCe---eeeeeeccCCCCEEEEEECCCCCEEEEEeCCC
Confidence 356799999999999975 67999999999999999875321 12223456778899999999999999999999
Q ss_pred eEEEEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEEEECCCccccceEEeeeccCCC
Q 048012 219 QAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPG 298 (616)
Q Consensus 219 ~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~ 298 (616)
.|+|||+...... ..+..|...+.+++|+|++ .+|++++.|+.|++||+.+.+....+. .+
T Consensus 103 ~i~lWd~~~~~~~------------~~~~~~~~~~~~~~~spdg-~~l~~g~~dg~v~i~~~~~~~~~~~~~------~~ 163 (321)
T 3ow8_A 103 HIRLWDLENGKQI------------KSIDAGPVDAWTLAFSPDS-QYLATGTHVGKVNIFGVESGKKEYSLD------TR 163 (321)
T ss_dssp EEEEEETTTTEEE------------EEEECCTTCCCCEEECTTS-SEEEEECTTSEEEEEETTTCSEEEEEE------CS
T ss_pred cEEEEECCCCCEE------------EEEeCCCccEEEEEECCCC-CEEEEEcCCCcEEEEEcCCCceeEEec------CC
Confidence 9999999876542 2345677788999999987 599999999999999998765543332 23
Q ss_pred CccEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCCCCCceeeecCCCCCeEEEEEcCCCCeEEEEecCCcEEEEeCCCCC
Q 048012 299 RVAVTTCAWDCDGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHSDDITALKFSSDGRILLSRSFDGSLKVWDLRKMK 378 (616)
Q Consensus 299 ~~~v~~~~~sp~g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~v~lwd~~~~~ 378 (616)
...|.+++|+|+|++|++|+.||.|++||++++ ..+..+.+|...|++|+|+|++++|++++.|++|+|||++...
T Consensus 164 ~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~----~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~ 239 (321)
T 3ow8_A 164 GKFILSIAYSPDGKYLASGAIDGIINIFDIATG----KLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHAN 239 (321)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSCEEEEETTTT----EEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCC
T ss_pred CceEEEEEECCCCCEEEEEcCCCeEEEEECCCC----cEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcc
Confidence 347999999999999999999999999999976 6778889999999999999999999999999999999998643
Q ss_pred CcceEecCCCCCCcceeEEECCCCCEEEEeeccccccCCCceEEEEeCCCCceEEEEecCCCCCeEEEEEcCCCCcEEEE
Q 048012 379 EPLKVFEDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREKLELVSRVGISPACSVVQCAWHPKLNQIFAT 458 (616)
Q Consensus 379 ~~~~~~~~~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~ 458 (616)
....+.. +...|.+++|+|++++|++++ .|+.|+|||+.+++++..+.. |...|.+++|+|++..|+++
T Consensus 240 -~~~~~~~--h~~~v~~~~~sp~~~~l~s~s-------~D~~v~iwd~~~~~~~~~~~~-h~~~v~~v~~s~~g~~l~s~ 308 (321)
T 3ow8_A 240 -LAGTLSG--HASWVLNVAFCPDDTHFVSSS-------SDKSVKVWDVGTRTCVHTFFD-HQDQVWGVKYNGNGSKIVSV 308 (321)
T ss_dssp -EEEEECC--CSSCEEEEEECTTSSEEEEEE-------TTSCEEEEETTTTEEEEEECC-CSSCEEEEEECTTSSEEEEE
T ss_pred -eeEEEcC--CCCceEEEEECCCCCEEEEEe-------CCCcEEEEeCCCCEEEEEEcC-CCCcEEEEEECCCCCEEEEE
Confidence 4555554 445699999999999999999 899999999999999998864 67789999999988888877
Q ss_pred eccCCCCceEEEecc
Q 048012 459 AGDKSQGGTHILYDP 473 (616)
Q Consensus 459 ~~d~~~~~~~~v~~~ 473 (616)
+. ++.++||++
T Consensus 309 ~~----d~~i~vwd~ 319 (321)
T 3ow8_A 309 GD----DQEIHIYDC 319 (321)
T ss_dssp ET----TCCEEEEEC
T ss_pred eC----CCeEEEEeC
Confidence 76 667888875
No 8
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=4.7e-40 Score=336.14 Aligned_cols=304 Identities=16% Similarity=0.246 Sum_probs=233.0
Q ss_pred ceEEecCCcc-cEEEEEECCCCCEEEEEEcCCcEEEEeCCCCccccccceecCCCCCCceEEEEecCCCCeEEEEeCCCe
Q 048012 141 NEIVLKGHTK-IVSALAVDHSGSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSDRFLCVTGSAQ 219 (616)
Q Consensus 141 ~~~~l~~H~~-~V~~v~~sp~g~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~s~d~~ 219 (616)
....|.+|.. .|++++|+|+|++||+|+.|++|+|||+.+... .........|...|.+++|+|++++|++++.|+.
T Consensus 7 ~~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~--~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~ 84 (345)
T 3fm0_A 7 LLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSW--ICKSVLSEGHQRTVRKVAWSPCGNYLASASFDAT 84 (345)
T ss_dssp EEEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEE--EEEEEECSSCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred EeeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcc--eeeeeeccccCCcEEEEEECCCCCEEEEEECCCc
Confidence 4457889988 999999999999999999999999999876421 1122234567788999999999999999999999
Q ss_pred EEEEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEEEECCCccccceEEeeeccCCCC
Q 048012 220 AKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPGR 299 (616)
Q Consensus 220 v~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~ 299 (616)
|+||++...... .+..+.+|...|.+++|+|++ .+|++|+.|++|++||+........+. ....|.
T Consensus 85 v~iw~~~~~~~~----------~~~~~~~h~~~v~~v~~sp~~-~~l~s~s~D~~v~iwd~~~~~~~~~~~---~~~~h~ 150 (345)
T 3fm0_A 85 TCIWKKNQDDFE----------CVTTLEGHENEVKSVAWAPSG-NLLATCSRDKSVWVWEVDEEDEYECVS---VLNSHT 150 (345)
T ss_dssp EEEEEECCC-EE----------EEEEECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEEECTTSCEEEEE---EECCCC
T ss_pred EEEEEccCCCeE----------EEEEccCCCCCceEEEEeCCC-CEEEEEECCCeEEEEECCCCCCeEEEE---EecCcC
Confidence 999998765421 234467999999999999987 699999999999999998654322221 123556
Q ss_pred ccEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCCCCCceeeecCCCCCeEEEEEcCCCCeEEEEecCCcEEEEeCCCCCC
Q 048012 300 VAVTTCAWDCDGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHSDDITALKFSSDGRILLSRSFDGSLKVWDLRKMKE 379 (616)
Q Consensus 300 ~~v~~~~~sp~g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~v~lwd~~~~~~ 379 (616)
..|.+++|+|++++|++|+.|++|++||++.+ .......+.+|...|++|+|+|+|++|++++.|++|+|||+.....
T Consensus 151 ~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~--~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~ 228 (345)
T 3fm0_A 151 QDVKHVVWHPSQELLASASYDDTVKLYREEED--DWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGN 228 (345)
T ss_dssp SCEEEEEECSSSSCEEEEETTSCEEEEEEETT--EEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTC
T ss_pred CCeEEEEECCCCCEEEEEeCCCcEEEEEecCC--CEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCC
Confidence 68999999999999999999999999998864 2234567889999999999999999999999999999999753321
Q ss_pred c--------------ceEecCCCCCCcceeEEECCCCCEEEEeeccccccCCCceEEEEeCCCCce--------EEEEec
Q 048012 380 P--------------LKVFEDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREKLEL--------VSRVGI 437 (616)
Q Consensus 380 ~--------------~~~~~~~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~~~~--------~~~~~~ 437 (616)
. +..+.. .+...|.+++|+|++.+|++++ .|+.|++|+...... ......
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~v~~~~~~~~l~s~~-------~d~~i~vw~~~~~~~~~~~~~~~~~~~~~ 300 (345)
T 3fm0_A 229 EQGVACSGSDPSWKCICTLSG-FHSRTIYDIAWCQLTGALATAC-------GDDAIRVFQEDPNSDPQQPTFSLTAHLHQ 300 (345)
T ss_dssp TTCCCCC---CEEEEEEEECS-SCSSCEEEEEECTTTCCEEEEE-------TTSCEEEEEECTTSCTTSCCEEEEEEETT
T ss_pred CccceeeccCCccceeEEecC-CCCCcEEEEEEecCCCEEEEEe-------CCCeEEEEEeCCCCCcceeeEEEEeeecc
Confidence 1 112211 1445699999999999999999 899999999865431 111222
Q ss_pred CCCCCeEEEEEcCCCC-cEEEEeccCCCCceEEEeccc
Q 048012 438 SPACSVVQCAWHPKLN-QIFATAGDKSQGGTHILYDPR 474 (616)
Q Consensus 438 ~~~~~v~~~~~~p~~~-~l~~~~~d~~~~~~~~v~~~~ 474 (616)
.|...|.+++|+|++. .|++++. ++.+++|++.
T Consensus 301 ~h~~~V~~v~~~p~~~~~laS~s~----Dg~v~~W~~~ 334 (345)
T 3fm0_A 301 AHSQDVNCVAWNPKEPGLLASCSD----DGEVAFWKYQ 334 (345)
T ss_dssp SSSSCEEEEEECSSSTTEEEEEET----TSCEEEEEEC
T ss_pred cccCcEeEeEEeCCCceEEEEcCC----CCcEEEEEec
Confidence 3556777777777764 3333333 5556666554
No 9
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=8.3e-40 Score=360.49 Aligned_cols=334 Identities=20% Similarity=0.276 Sum_probs=260.0
Q ss_pred EEecCCcccEEEEEECCCCC-EEEEEEcCCcEEEEeCCCCccccccceecCCCCCCceEEEEecCCCCeEEEEeCCCeEE
Q 048012 143 IVLKGHTKIVSALAVDHSGS-RVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSDRFLCVTGSAQAK 221 (616)
Q Consensus 143 ~~l~~H~~~V~~v~~sp~g~-~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~s~d~~v~ 221 (616)
..+.+|...|++++|+|++. +|++|+.|++|++||..... .......|...|.+++|+|+|++|++++.|+.|+
T Consensus 141 ~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~-----~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~ 215 (611)
T 1nr0_A 141 GNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFK-----FKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIV 215 (611)
T ss_dssp BCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBE-----EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred ceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCe-----EeeeeccccCceEEEEECCCCCEEEEEECCCcEE
Confidence 35789999999999999987 69999999999999976531 2223446778899999999999999999999999
Q ss_pred EEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEEEECCCccccceEEe----------
Q 048012 222 IYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIK---------- 291 (616)
Q Consensus 222 vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~---------- 291 (616)
|||+.......... .......+|...|.+++|+|++ .+|++++.|++|+|||+.+++....+..
T Consensus 216 lwd~~~g~~~~~~~-----~~~~~~~~h~~~V~~v~~spdg-~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~ 289 (611)
T 1nr0_A 216 LYNGVDGTKTGVFE-----DDSLKNVAHSGSVFGLTWSPDG-TKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLG 289 (611)
T ss_dssp EEETTTCCEEEECB-----CTTSSSCSSSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEE
T ss_pred EEECCCCcEeeeec-----cccccccccCCCEEEEEECCCC-CEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEE
Confidence 99987654322110 0011123899999999999987 5999999999999999987655433211
Q ss_pred ---------------------------eeccCCCCccEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCCCCCceeee-cC
Q 048012 292 ---------------------------PKLARPGRVAVTTCAWDCDGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVE-KG 343 (616)
Q Consensus 292 ---------------------------~~~~~~~~~~v~~~~~sp~g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~-~~ 343 (616)
.....+|...|++++|+|+|++|++++.||+|++||+.++ .....+ .+
T Consensus 290 ~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~----~~~~~~~~~ 365 (611)
T 1nr0_A 290 IIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTG----ISNRVFPDV 365 (611)
T ss_dssp EEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTC----CEEECSSCS
T ss_pred EEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCC----ceeeecccC
Confidence 0112357778999999999999999999999999999876 333333 67
Q ss_pred CCCCeEEEEEcCCCCeEEEEecCCcEEEEeCCCCCCcc--------------------------------eEec-----C
Q 048012 344 HSDDITALKFSSDGRILLSRSFDGSLKVWDLRKMKEPL--------------------------------KVFE-----D 386 (616)
Q Consensus 344 h~~~V~~l~~spdg~~l~s~s~Dg~v~lwd~~~~~~~~--------------------------------~~~~-----~ 386 (616)
|...|.+++|++++ .|++++.|+++++|++....... ..+. .
T Consensus 366 h~~~v~~~~~s~~~-~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~ 444 (611)
T 1nr0_A 366 HATMITGIKTTSKG-DLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTE 444 (611)
T ss_dssp CSSCEEEEEECTTS-CEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEE
T ss_pred CcceEEEEEECCCC-cEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceee
Confidence 99999999999765 78899999999999986532100 0000 0
Q ss_pred CCCCCcceeEEECCCCCEEEEeeccccccCCCceEEEEeCCCCceEEEEecCCCCCeEEEEEcCCCCcEEEEeccCC---
Q 048012 387 LPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREKLELVSRVGISPACSVVQCAWHPKLNQIFATAGDKS--- 463 (616)
Q Consensus 387 ~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~--- 463 (616)
..+...+.+++|+|||++|++|+ .|+.|+|||+.++.........|...|.+++|+|++++|++++.|+.
T Consensus 445 ~~~~~~v~~va~spdg~~lasgs-------~D~~v~lwd~~~~~~~~~~~~~h~~~v~~v~fspdg~~las~s~d~~v~~ 517 (611)
T 1nr0_A 445 VPISYNSSCVALSNDKQFVAVGG-------QDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIP 517 (611)
T ss_dssp EECSSCEEEEEECTTSCEEEEEE-------TTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred eecCCCceEEEEeCCCCEEEEeC-------CCCeEEEEEccCCceeeeeccCCCCceEEEEECCCCCEEEEEcCCCCEEE
Confidence 01234578999999999999999 89999999998765432222347788999999999999999987640
Q ss_pred ---------------CCceEEEecccCCCCCcEEEEecCCcceecccccCC
Q 048012 464 ---------------QGGTHILYDPRLSERGALVCVARAPRKKSVDDFEVA 499 (616)
Q Consensus 464 ---------------~~~~~~v~~~~~s~~g~~l~s~~~d~~~~~wd~~~~ 499 (616)
.+|...|++++|+|+|++|++++.|+++++|++...
T Consensus 518 w~~~~~~~~~~~~~~~~H~~~V~~v~fspdg~~lasgs~D~~v~lW~~~~~ 568 (611)
T 1nr0_A 518 YSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKP 568 (611)
T ss_dssp EEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCT
T ss_pred EEcCCCCceeeeeeeeecccceeEEEECCCCCEEEEEECCCcEEEEECCCc
Confidence 115556777889999999999999999999999653
No 10
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=4.5e-39 Score=328.61 Aligned_cols=297 Identities=18% Similarity=0.260 Sum_probs=230.5
Q ss_pred cceEEecCCcccEEEEEE-----CC-CCCEEEEEEcCCcEEEEeCCCCccc--cccceecCCCCCCceEEEEecCCCCeE
Q 048012 140 SNEIVLKGHTKIVSALAV-----DH-SGSRVLSGSYDYTVRMYDFQGMNSR--LQSFRQLEPSEGHQVRNLSWSPTSDRF 211 (616)
Q Consensus 140 ~~~~~l~~H~~~V~~v~~-----sp-~g~~lasgs~Dg~i~iwd~~~~~~~--~~~~~~~~~~~~~~v~~l~~sp~g~~l 211 (616)
.....|.+|+..|++|+| ++ ++.+||+|+.|++|+|||+...... ..........|...|.+++|+|++.+|
T Consensus 12 ~~~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l 91 (343)
T 2xzm_R 12 VKRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFA 91 (343)
T ss_dssp EEEEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEE
T ss_pred eeeeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEE
Confidence 345579999999999999 76 8999999999999999998753221 111223345678889999999999999
Q ss_pred EEEeCCCeEEEEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEEEECCCccccceEEe
Q 048012 212 LCVTGSAQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIK 291 (616)
Q Consensus 212 ~~~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~ 291 (616)
++++.|+.|+|||+..... +..+.+|...|.+++|+|++ .+|++++.|++|++||+.... ...
T Consensus 92 ~s~s~D~~v~lwd~~~~~~------------~~~~~~h~~~v~~v~~sp~~-~~l~s~~~d~~i~~wd~~~~~----~~~ 154 (343)
T 2xzm_R 92 ISSSWDKTLRLWDLRTGTT------------YKRFVGHQSEVYSVAFSPDN-RQILSAGAEREIKLWNILGEC----KFS 154 (343)
T ss_dssp EEEETTSEEEEEETTSSCE------------EEEEECCCSCEEEEEECSST-TEEEEEETTSCEEEEESSSCE----EEE
T ss_pred EEEcCCCcEEEEECCCCcE------------EEEEcCCCCcEEEEEECCCC-CEEEEEcCCCEEEEEeccCCc----eee
Confidence 9999999999999987653 23357899999999999987 599999999999999997321 111
Q ss_pred eeccCCCCccEEEEEECCCC----------CeEEEEeCCCcEEEEeCCCCCCCCCceeeecCCCCCeEEEEEcCCCCeEE
Q 048012 292 PKLARPGRVAVTTCAWDCDG----------KCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHSDDITALKFSSDGRILL 361 (616)
Q Consensus 292 ~~~~~~~~~~v~~~~~sp~g----------~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~ 361 (616)
......|...|.+++|+|++ .+|++++.||.|++||... .....+.+|...|.+++|+|+|++|+
T Consensus 155 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-----~~~~~~~~h~~~v~~~~~s~~g~~l~ 229 (343)
T 2xzm_R 155 SAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNF-----QIRYTFKAHESNVNHLSISPNGKYIA 229 (343)
T ss_dssp CCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETTT-----EEEEEEECCSSCEEEEEECTTSSEEE
T ss_pred eecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCCC-----ceeEEEcCccccceEEEECCCCCEEE
Confidence 11223566689999999987 7899999999999999543 46667889999999999999999999
Q ss_pred EEecCCcEEEEeCCCCCCcceEecCCCCCCcceeEEECCCCCEEEEeeccccccCCCceEEEEeCCCCceEE--EEec--
Q 048012 362 SRSFDGSLKVWDLRKMKEPLKVFEDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREKLELVS--RVGI-- 437 (616)
Q Consensus 362 s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~~~~~~--~~~~-- 437 (616)
+++.|++|+|||++....+...+. ....|.+++|+|++++|+++. |+.|+|||+.+++... .+..
T Consensus 230 sgs~dg~v~iwd~~~~~~~~~~~~---~~~~v~~v~~sp~~~~la~~~--------d~~v~iw~~~~~~~~~~~~~~~~~ 298 (343)
T 2xzm_R 230 TGGKDKKLLIWDILNLTYPQREFD---AGSTINQIAFNPKLQWVAVGT--------DQGVKIFNLMTQSKAPVCTIEAEP 298 (343)
T ss_dssp EEETTCEEEEEESSCCSSCSEEEE---CSSCEEEEEECSSSCEEEEEE--------SSCEEEEESSSCCSCSEEECCCCS
T ss_pred EEcCCCeEEEEECCCCcccceeec---CCCcEEEEEECCCCCEEEEEC--------CCCEEEEEeCCCCCCceEEeecCc
Confidence 999999999999966555555543 234599999999999888764 7789999998876544 2221
Q ss_pred --------CCCCCeEEEEEcCCCCcEEEEeccCCCCceEEEecc
Q 048012 438 --------SPACSVVQCAWHPKLNQIFATAGDKSQGGTHILYDP 473 (616)
Q Consensus 438 --------~~~~~v~~~~~~p~~~~l~~~~~d~~~~~~~~v~~~ 473 (616)
.+...|.+++|+|+++.|++++. ++.+++|++
T Consensus 299 ~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~----Dg~v~~w~~ 338 (343)
T 2xzm_R 299 ITKAEGQKGKNPQCTSLAWNALGKKLFAGFT----DGVIRTFSF 338 (343)
T ss_dssp GGGBTTBCCSCCCEEEEEECSSSCCEEEEET----TSEEEEEEE
T ss_pred chhhhhhcCCCCceEEEEECCCCCeEEEecC----CceEEEEEE
Confidence 13345666666666666666655 456666654
No 11
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=2.6e-39 Score=326.88 Aligned_cols=293 Identities=18% Similarity=0.248 Sum_probs=228.6
Q ss_pred ceEEecCCcccEEEEEECCCC-CEEEEEEcCCcEEEEeCCCCccccccceecCCCCCCceEEEEecCCCCeEEEEeCCCe
Q 048012 141 NEIVLKGHTKIVSALAVDHSG-SRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSDRFLCVTGSAQ 219 (616)
Q Consensus 141 ~~~~l~~H~~~V~~v~~sp~g-~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~s~d~~ 219 (616)
...+|.+|.+.|++|+|+|++ ++|++|+.|++|++|++................|...|.+++|++++.+|++++.|+.
T Consensus 9 l~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~ 88 (319)
T 3frx_A 9 LRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKT 88 (319)
T ss_dssp EEEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSE
T ss_pred EEEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCCCE
Confidence 345789999999999999965 8999999999999999865332222222234468889999999999999999999999
Q ss_pred EEEEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEEEECCCccccceEEeeeccCCCC
Q 048012 220 AKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPGR 299 (616)
Q Consensus 220 v~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~ 299 (616)
|+|||+...+. +..+.+|...|.+++|+|++ .+|++|+.|++|++||+... ....+ .+|.
T Consensus 89 v~~wd~~~~~~------------~~~~~~h~~~v~~~~~~~~~-~~l~s~s~D~~i~vwd~~~~-~~~~~------~~h~ 148 (319)
T 3frx_A 89 LRLWDVATGET------------YQRFVGHKSDVMSVDIDKKA-SMIISGSRDKTIKVWTIKGQ-CLATL------LGHN 148 (319)
T ss_dssp EEEEETTTTEE------------EEEEECCSSCEEEEEECTTS-CEEEEEETTSCEEEEETTSC-EEEEE------CCCS
T ss_pred EEEEECCCCCe------------eEEEccCCCcEEEEEEcCCC-CEEEEEeCCCeEEEEECCCC-eEEEE------eccC
Confidence 99999987764 33357899999999999987 59999999999999999642 22211 3456
Q ss_pred ccEEEEEECCC------CCeEEEEeCCCcEEEEeCCCCCCCCCceeeecCCCCCeEEEEEcCCCCeEEEEecCCcEEEEe
Q 048012 300 VAVTTCAWDCD------GKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHSDDITALKFSSDGRILLSRSFDGSLKVWD 373 (616)
Q Consensus 300 ~~v~~~~~sp~------g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~v~lwd 373 (616)
..|.++.|+|. +.+|++++.|+.|++||++.. .....+.+|...|.+++|+|++++|++++.||+|+|||
T Consensus 149 ~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~----~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd 224 (319)
T 3frx_A 149 DWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQF----QIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWN 224 (319)
T ss_dssp SCEEEEEECCC------CCEEEEEETTSCEEEEETTTT----EEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEE
T ss_pred CcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcc----hhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEE
Confidence 68999999985 458999999999999999865 56677889999999999999999999999999999999
Q ss_pred CCCCCCcceEecCCCCCCcceeEEECCCCCEEEEeeccccccCCCceEEEEeCCCCceEEEEecC-------CCCCeEEE
Q 048012 374 LRKMKEPLKVFEDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREKLELVSRVGIS-------PACSVVQC 446 (616)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~~~~~~~~~~~-------~~~~v~~~ 446 (616)
+++.. .+..+.. ...|.+++|+|++.+|++++ ++.|++|++.....+..+... +...+.++
T Consensus 225 ~~~~~-~~~~~~~---~~~v~~~~~sp~~~~la~~~--------~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 292 (319)
T 3frx_A 225 LAAKK-AMYTLSA---QDEVFSLAFSPNRYWLAAAT--------ATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSL 292 (319)
T ss_dssp TTTTE-EEEEEEC---CSCEEEEEECSSSSEEEEEE--------TTEEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEE
T ss_pred CCCCc-EEEEecC---CCcEEEEEEcCCCCEEEEEc--------CCCcEEEEeCcCeeeeccCccccccccCcCcceeEE
Confidence 98743 3444443 34599999999999999987 455999999988777666421 12334555
Q ss_pred EEcCCCCcEEEEeccCCCCceEEEecc
Q 048012 447 AWHPKLNQIFATAGDKSQGGTHILYDP 473 (616)
Q Consensus 447 ~~~p~~~~l~~~~~d~~~~~~~~v~~~ 473 (616)
+|+|++++|++++. ++.++||++
T Consensus 293 ~~spdg~~l~sg~~----Dg~i~vWd~ 315 (319)
T 3frx_A 293 AWSADGQTLFAGYT----DNVIRVWQV 315 (319)
T ss_dssp EECTTSSEEEEEET----TSCEEEEEE
T ss_pred EECCCCCEEEEeec----CceEEEEEE
Confidence 55555555554444 344444444
No 12
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=2.7e-38 Score=318.20 Aligned_cols=297 Identities=24% Similarity=0.403 Sum_probs=243.8
Q ss_pred CcceEEecCCcccEEEEEECCCCCEEEEEEcCCcEEEEeCCCCccccccceecCCCCCCceEEEEecCCCCeEEEEeCCC
Q 048012 139 MSNEIVLKGHTKIVSALAVDHSGSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSDRFLCVTGSA 218 (616)
Q Consensus 139 ~~~~~~l~~H~~~V~~v~~sp~g~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~s~d~ 218 (616)
......+.+|...|++++|+|++++|++|+.||.|+||++..+. .......|...|.+++|+|++++|++++.|+
T Consensus 13 ~~~~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~-----~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~ 87 (312)
T 4ery_A 13 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK-----FEKTISGHKLGISDVAWSSDSNLLVSASDDK 87 (312)
T ss_dssp CEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC-----EEEEECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred ceeEEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcc-----cchhhccCCCceEEEEEcCCCCEEEEECCCC
Confidence 34567899999999999999999999999999999999987642 2223345777899999999999999999999
Q ss_pred eEEEEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEEEECCCccccceEEeeeccCCC
Q 048012 219 QAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPG 298 (616)
Q Consensus 219 ~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~ 298 (616)
.|+|||+..... +..+.+|...|.++.|+|++ .+|++|+.|++|++||+.+++....+ ..|
T Consensus 88 ~i~vwd~~~~~~------------~~~~~~~~~~v~~~~~~~~~-~~l~s~~~d~~i~iwd~~~~~~~~~~------~~~ 148 (312)
T 4ery_A 88 TLKIWDVSSGKC------------LKTLKGHSNYVFCCNFNPQS-NLIVSGSFDESVRIWDVKTGKCLKTL------PAH 148 (312)
T ss_dssp EEEEEETTTCCE------------EEEEECCSSCEEEEEECSSS-SEEEEEETTSCEEEEETTTCCEEEEE------CCC
T ss_pred EEEEEECCCCcE------------EEEEcCCCCCEEEEEEcCCC-CEEEEEeCCCcEEEEECCCCEEEEEe------cCC
Confidence 999999987653 23356899999999999987 69999999999999999876554333 245
Q ss_pred CccEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCCCCCceee-ecCCCCCeEEEEEcCCCCeEEEEecCCcEEEEeCCCC
Q 048012 299 RVAVTTCAWDCDGKCIAGGIGDGSIQVWNLKPGWGSRPDIHV-EKGHSDDITALKFSSDGRILLSRSFDGSLKVWDLRKM 377 (616)
Q Consensus 299 ~~~v~~~~~sp~g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~-~~~h~~~V~~l~~spdg~~l~s~s~Dg~v~lwd~~~~ 377 (616)
...|.+++|+|++++|++|+.||.|++||++++ ..+.. ...|...|.+++|+|++++|++++.|+.|++||+++.
T Consensus 149 ~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~ 224 (312)
T 4ery_A 149 SDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG----QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKG 224 (312)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSCEEEEETTTC----CEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTT
T ss_pred CCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCC----ceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCC
Confidence 558999999999999999999999999999875 33333 3456778999999999999999999999999999874
Q ss_pred CCcceEecCCCCCCcceeEEE-CCCCCEEEEeeccccccCCCceEEEEeCCCCceEEEEecCCCCCeEEEEEcCCCCcEE
Q 048012 378 KEPLKVFEDLPNNYAQTNVAF-SPDEQLFLTGTSVERESTTGGLLCFYDREKLELVSRVGISPACSVVQCAWHPKLNQIF 456 (616)
Q Consensus 378 ~~~~~~~~~~~~~~~v~~v~f-spdg~~l~~gs~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~ 456 (616)
..+..+..+..........| .+++.+|++|+ .||.|++||+.+++++..+.. |...|.+++|+|+++.|+
T Consensus 225 -~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~-------~dg~i~vwd~~~~~~~~~~~~-h~~~v~~~~~~p~~~~l~ 295 (312)
T 4ery_A 225 -KCLKTYTGHKNEKYCIFANFSVTGGKWIVSGS-------EDNLVYIWNLQTKEIVQKLQG-HTDVVISTACHPTENIIA 295 (312)
T ss_dssp -EEEEEECSSCCSSSCCCEEEECSSSCEEEECC-------TTSCEEEEETTTCCEEEEECC-CSSCEEEEEECSSSSEEE
T ss_pred -cEEEEEEecCCceEEEEEEEEeCCCcEEEEEC-------CCCEEEEEECCCchhhhhhhc-cCCcEEEEeecCcCCceE
Confidence 34555555443322333344 46789999999 899999999999999988874 678899999999999988
Q ss_pred EEeccCCCCceEEEeccc
Q 048012 457 ATAGDKSQGGTHILYDPR 474 (616)
Q Consensus 457 ~~~~d~~~~~~~~v~~~~ 474 (616)
+++.+ .++.+++|...
T Consensus 296 s~~~~--~d~~i~~W~~d 311 (312)
T 4ery_A 296 SAALE--NDKTIKLWKSD 311 (312)
T ss_dssp EEECT--TTCCEEEEECC
T ss_pred EEEcc--CCccEEEecCC
Confidence 88742 16788888753
No 13
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=2.9e-38 Score=345.87 Aligned_cols=306 Identities=23% Similarity=0.377 Sum_probs=260.2
Q ss_pred ceEEecCCcccEEEEEECCCCCEEEEEEcCCcEEEEeCCCCccccccceecCCCCCCceEEEEecCCCCeEEEEeCCCeE
Q 048012 141 NEIVLKGHTKIVSALAVDHSGSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSDRFLCVTGSAQA 220 (616)
Q Consensus 141 ~~~~l~~H~~~V~~v~~sp~g~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~s~d~~v 220 (616)
....+.+|...|++++|+|++++|++++.|+.|++|+.... .......|...|.+++|+|++.+|++++.|+.|
T Consensus 254 ~~~~~~~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~~~~------~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i 327 (577)
T 2ymu_A 254 LLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRNGQ------LLQTLTGHSSSVWGVAFSPDGQTIASASDDKTV 327 (577)
T ss_dssp EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSC------EEEEECCCSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred EEEEEecCCCCEEEEEEcCCCCEEEEEeCCCEEEEEeCCCc------EEEEEecCCCCeEEEEECCCCCEEEEEeCCCeE
Confidence 34578899999999999999999999999999999997642 122334577789999999999999999999999
Q ss_pred EEEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEEEECCCccccceEEeeeccCCCCc
Q 048012 221 KIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPGRV 300 (616)
Q Consensus 221 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~ 300 (616)
++|++.+..+. .+.+|...|.+++|+|++ .+|++++.|+.|++||... +....+ ..|..
T Consensus 328 ~~w~~~~~~~~-------------~~~~~~~~v~~~~~s~~g-~~l~~~~~dg~v~~~~~~~-~~~~~~------~~~~~ 386 (577)
T 2ymu_A 328 KLWNRNGQHLQ-------------TLTGHSSSVWGVAFSPDG-QTIASASDDKTVKLWNRNG-QLLQTL------TGHSS 386 (577)
T ss_dssp EEEETTSCEEE-------------EECCCSSCEEEEEECTTS-SEEEEEETTSEEEEEETTC-CEEEEE------ECCSS
T ss_pred EEEeCCCCeeE-------------EEeCCCCCEEEEEECCCC-CEEEEEeCCCEEEEEcCCC-CEEEEe------cCCCC
Confidence 99998876542 246789999999999987 5999999999999999643 322222 24555
Q ss_pred cEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCCCCCceeeecCCCCCeEEEEEcCCCCeEEEEecCCcEEEEeCCCCCCc
Q 048012 301 AVTTCAWDCDGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHSDDITALKFSSDGRILLSRSFDGSLKVWDLRKMKEP 380 (616)
Q Consensus 301 ~v~~~~~sp~g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~v~lwd~~~~~~~ 380 (616)
.|++++|+|+|++|++++.|+.|++||... ..+..+.+|...|++++|+|++++|++++.|++|++||+.. ..
T Consensus 387 ~v~~~~~s~dg~~l~~~~~d~~v~~~~~~~-----~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~~--~~ 459 (577)
T 2ymu_A 387 SVRGVAFSPDGQTIASASDDKTVKLWNRNG-----QLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRNG--QL 459 (577)
T ss_dssp CEEEEEECTTSSCEEEEETTSEEEEECTTC-----CEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTS--CE
T ss_pred CeEEEEECCCCCEEEEEeCCCEEEEEeCCC-----CEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEECCC--CE
Confidence 899999999999999999999999999653 56778899999999999999999999999999999999753 34
Q ss_pred ceEecCCCCCCcceeEEECCCCCEEEEeeccccccCCCceEEEEeCCCCceEEEEecCCCCCeEEEEEcCCCCcEEEEec
Q 048012 381 LKVFEDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREKLELVSRVGISPACSVVQCAWHPKLNQIFATAG 460 (616)
Q Consensus 381 ~~~~~~~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~ 460 (616)
+..+.. +...|++++|+|++++|++++ .|+.|+|||. +++++..+.. |...|++++|+|++++|++++.
T Consensus 460 ~~~~~~--~~~~v~~~~~spd~~~las~~-------~d~~i~iw~~-~~~~~~~~~~-h~~~v~~l~~s~dg~~l~s~~~ 528 (577)
T 2ymu_A 460 LQTLTG--HSSSVRGVAFSPDGQTIASAS-------DDKTVKLWNR-NGQLLQTLTG-HSSSVRGVAFSPDGQTIASASD 528 (577)
T ss_dssp EEEEEC--CSSCEEEEEECTTSCEEEEEE-------TTSEEEEEET-TSCEEEEEEC-CSSCEEEEEECTTSSCEEEEET
T ss_pred EEEEcC--CCCCEEEEEEcCCCCEEEEEe-------CCCEEEEEcC-CCCEEEEEeC-CCCCEEEEEEcCCCCEEEEEEC
Confidence 555554 445699999999999999999 8999999995 6788888864 7788999999999999999988
Q ss_pred cCCCCceEEEec------------------ccCCCCCcEEEEecCCcceeccc
Q 048012 461 DKSQGGTHILYD------------------PRLSERGALVCVARAPRKKSVDD 495 (616)
Q Consensus 461 d~~~~~~~~v~~------------------~~~s~~g~~l~s~~~d~~~~~wd 495 (616)
++.++||+ ++|+|||++|++++.|+.|++||
T Consensus 529 ----dg~v~lwd~~~~~~~~~~~h~~~v~~~~fs~dg~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 529 ----DKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASSDKTVKLWN 577 (577)
T ss_dssp ----TSEEEEECTTSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred ----cCEEEEEeCCCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEeC
Confidence 45555555 77999999999999999999997
No 14
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=5.2e-39 Score=329.90 Aligned_cols=294 Identities=11% Similarity=0.093 Sum_probs=225.1
Q ss_pred cCCcccEEEEEECCCCCEEEEEEc------CCcEEEEeCCCCccccccceecCCCCCCceEEEEecCCCCeEEEEeCCCe
Q 048012 146 KGHTKIVSALAVDHSGSRVLSGSY------DYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSDRFLCVTGSAQ 219 (616)
Q Consensus 146 ~~H~~~V~~v~~sp~g~~lasgs~------Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~s~d~~ 219 (616)
..|...|++|+|+|||++||+|+. |+.|++|+...+.... .+......+...|.+++|+|++. +++++.++.
T Consensus 39 ~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~-~~~~~~~~~~~~V~~~~~s~d~~-~l~~s~dg~ 116 (357)
T 4g56_B 39 ACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNE-SLCTAGVQTEAGVTDVAWVSEKG-ILVASDSGA 116 (357)
T ss_dssp -CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CG-GGCSEEEECSSCEEEEEEETTTE-EEEEETTSC
T ss_pred ccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcce-eEecccCCCCCCEEEEEEcCCCC-EEEEECCCE
Confidence 479999999999999999999998 7789999887643222 12222224566799999999975 567889999
Q ss_pred EEEEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEEEECCCccccceEEeeeccCCCC
Q 048012 220 AKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPGR 299 (616)
Q Consensus 220 v~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~ 299 (616)
|+|||+........ ......+|...|++++|+|++ .+|++|+.|++|+|||+.+++....+ ..|.
T Consensus 117 v~lWd~~~~~~~~~--------~~~~~~~h~~~V~~v~~spdg-~~l~sgs~dg~v~iwd~~~~~~~~~~------~~h~ 181 (357)
T 4g56_B 117 VELWEILEKESLLV--------NKFAKYEHDDIVKTLSVFSDG-TQAVSGGKDFSVKVWDLSQKAVLKSY------NAHS 181 (357)
T ss_dssp EEEC--------CC--------CCEEECCCSSCEEEEEECSSS-SEEEEEETTSCEEEEETTTTEEEEEE------CCCS
T ss_pred EEEeeccccceeEE--------EeeccCCCCCCEEEEEECCCC-CEEEEEeCCCeEEEEECCCCcEEEEE------cCCC
Confidence 99999876542111 011235899999999999987 59999999999999999886554433 3456
Q ss_pred ccEEEEEECCCCC-eEEEEeCCCcEEEEeCCCCCCCCCceeeecCCCCCeEEEEEcCC-CCeEEEEecCCcEEEEeCCCC
Q 048012 300 VAVTTCAWDCDGK-CIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHSDDITALKFSSD-GRILLSRSFDGSLKVWDLRKM 377 (616)
Q Consensus 300 ~~v~~~~~sp~g~-~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~spd-g~~l~s~s~Dg~v~lwd~~~~ 377 (616)
..|++++|++++. +|++++.||+|++||++++. .........|...|++|+|+|+ +.+|++++.|+.|+|||+++.
T Consensus 182 ~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~--~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~ 259 (357)
T 4g56_B 182 SEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPK--PATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNP 259 (357)
T ss_dssp SCEEEEEECTTCSSCEEEEETTSCEEECCTTSSS--CBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCG
T ss_pred CCEEEEEEccCCCceeeeeccCCceEEEECCCCc--eeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCC
Confidence 6899999999875 78999999999999998762 2222334567788999999997 568899999999999999875
Q ss_pred CCcceEecCCCCCCcceeEEECCCC-CEEEEeeccccccCCCceEEEEeCCCCceEEEEecCCCCCeEEEEEcC-CCCcE
Q 048012 378 KEPLKVFEDLPNNYAQTNVAFSPDE-QLFLTGTSVERESTTGGLLCFYDREKLELVSRVGISPACSVVQCAWHP-KLNQI 455 (616)
Q Consensus 378 ~~~~~~~~~~~~~~~v~~v~fspdg-~~l~~gs~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p-~~~~l 455 (616)
.++..+..+ ...|++++|+|++ ++|++|+ .|+.|+|||+.+++++..+ .|...|++|+|+| ++.+|
T Consensus 260 -~~~~~~~~~--~~~v~~l~~sp~~~~~lasgs-------~D~~i~iwd~~~~~~~~~~--~H~~~V~~vafsP~d~~~l 327 (357)
T 4g56_B 260 -DSAQTSAVH--SQNITGLAYSYHSSPFLASIS-------EDCTVAVLDADFSEVFRDL--SHRDFVTGVAWSPLDHSKF 327 (357)
T ss_dssp -GGCEEECCC--SSCEEEEEECSSSSCCEEEEE-------TTSCEEEECTTSCEEEEEC--CCSSCEEEEEECSSSTTEE
T ss_pred -cEeEEEecc--ceeEEEEEEcCCCCCEEEEEe-------CCCEEEEEECCCCcEeEEC--CCCCCEEEEEEeCCCCCEE
Confidence 445566553 4569999999987 5788998 8999999999999988765 4778899999998 56666
Q ss_pred EEEeccCCCCceEEEeccc
Q 048012 456 FATAGDKSQGGTHILYDPR 474 (616)
Q Consensus 456 ~~~~~d~~~~~~~~v~~~~ 474 (616)
++++. ++.+++|++.
T Consensus 328 ~s~s~----Dg~v~iW~~~ 342 (357)
T 4g56_B 328 TTVGW----DHKVLHHHLP 342 (357)
T ss_dssp EEEET----TSCEEEEECC
T ss_pred EEEcC----CCeEEEEECC
Confidence 66665 6788888875
No 15
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=1.4e-38 Score=331.40 Aligned_cols=295 Identities=21% Similarity=0.330 Sum_probs=237.0
Q ss_pred cCCcccEEEEEECCCCCEEEEEEcCCcEEEEeCCCCccccccceec--------------CCCCCCceEEEEecCCCCeE
Q 048012 146 KGHTKIVSALAVDHSGSRVLSGSYDYTVRMYDFQGMNSRLQSFRQL--------------EPSEGHQVRNLSWSPTSDRF 211 (616)
Q Consensus 146 ~~H~~~V~~v~~sp~g~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~--------------~~~~~~~v~~l~~sp~g~~l 211 (616)
.+|...|+|++|+|+|++||+|+ +++++||++.++.... .+... ...+...|.+++|+|++++|
T Consensus 61 ~~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l 138 (393)
T 1erj_A 61 LDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVA-RLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFL 138 (393)
T ss_dssp EECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEE-EECC-----------------CCCCBEEEEEECTTSSEE
T ss_pred cCCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEE-EecCccccccccccccccccCCCceeEEEEEECCCCCEE
Confidence 36999999999999999999987 7899999997653211 11100 00122349999999999999
Q ss_pred EEEeCCCeEEEEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEEEECCCccccceEEe
Q 048012 212 LCVTGSAQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIK 291 (616)
Q Consensus 212 ~~~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~ 291 (616)
++++.|+.|+|||+.+... +..+.+|...|.+++|+|++ .+|++++.|++|++||+.+++....+.
T Consensus 139 ~s~~~d~~i~iwd~~~~~~------------~~~~~~h~~~v~~~~~~p~~-~~l~s~s~d~~v~iwd~~~~~~~~~~~- 204 (393)
T 1erj_A 139 ATGAEDRLIRIWDIENRKI------------VMILQGHEQDIYSLDYFPSG-DKLVSGSGDRTVRIWDLRTGQCSLTLS- 204 (393)
T ss_dssp EEEETTSCEEEEETTTTEE------------EEEECCCSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTTEEEEEEE-
T ss_pred EEEcCCCeEEEEECCCCcE------------EEEEccCCCCEEEEEEcCCC-CEEEEecCCCcEEEEECCCCeeEEEEE-
Confidence 9999999999999987764 23367899999999999987 599999999999999998876543332
Q ss_pred eeccCCCCccEEEEEECC-CCCeEEEEeCCCcEEEEeCCCCCCCCCceeee-------cCCCCCeEEEEEcCCCCeEEEE
Q 048012 292 PKLARPGRVAVTTCAWDC-DGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVE-------KGHSDDITALKFSSDGRILLSR 363 (616)
Q Consensus 292 ~~~~~~~~~~v~~~~~sp-~g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~-------~~h~~~V~~l~~spdg~~l~s~ 363 (616)
+...+.+++|+| ++++|++|+.||.|++||++++ ..+..+ .+|...|++|+|+|++++|+++
T Consensus 205 ------~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~----~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~ 274 (393)
T 1erj_A 205 ------IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETG----FLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSG 274 (393)
T ss_dssp ------CSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTC----CEEEEEC------CCCSSCEEEEEECTTSSEEEEE
T ss_pred ------cCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCC----cEEEeecccccCCCCCCCCEEEEEECCCCCEEEEE
Confidence 223689999999 8999999999999999999876 333333 5799999999999999999999
Q ss_pred ecCCcEEEEeCCCCCC-----------cceEecCCCCCCcceeEEECCCCCEEEEeeccccccCCCceEEEEeCCCCceE
Q 048012 364 SFDGSLKVWDLRKMKE-----------PLKVFEDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREKLELV 432 (616)
Q Consensus 364 s~Dg~v~lwd~~~~~~-----------~~~~~~~~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~~~~~ 432 (616)
+.|++|+|||+++... +...+.. +...|.+++|+|++++|++|+ .|+.|+|||+.+++++
T Consensus 275 s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~--h~~~v~~~~~~~~~~~l~sgs-------~D~~v~iwd~~~~~~~ 345 (393)
T 1erj_A 275 SLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIG--HKDFVLSVATTQNDEYILSGS-------KDRGVLFWDKKSGNPL 345 (393)
T ss_dssp ETTSEEEEEEC---------------CEEEEEEC--CSSCEEEEEECGGGCEEEEEE-------TTSEEEEEETTTCCEE
T ss_pred eCCCEEEEEECCCCCCcccccCCCCCcceEEEec--ccCcEEEEEECCCCCEEEEEe-------CCCeEEEEECCCCeEE
Confidence 9999999999986322 1223333 445699999999999999999 8999999999999999
Q ss_pred EEEecCCCCCeEEEEEcCCCCcEEEEeccCCCCceEEEecccCCCCCcEEEEecCCcceeccccc
Q 048012 433 SRVGISPACSVVQCAWHPKLNQIFATAGDKSQGGTHILYDPRLSERGALVCVARAPRKKSVDDFE 497 (616)
Q Consensus 433 ~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~~~~~~~v~~~~~s~~g~~l~s~~~d~~~~~wd~~ 497 (616)
..+.. |...|.+++|++.. .++|++.+|++++.|+++++|++.
T Consensus 346 ~~l~~-h~~~v~~v~~~~~~---------------------~~~p~~~~l~sgs~Dg~i~iW~~~ 388 (393)
T 1erj_A 346 LMLQG-HRNSVISVAVANGS---------------------SLGPEYNVFATGSGDCKARIWKYK 388 (393)
T ss_dssp EEEEC-CSSCEEEEEECSSC---------------------TTCTTCEEEEEEETTSEEEEEEEE
T ss_pred EEECC-CCCCEEEEEecCCc---------------------CcCCCCCEEEEECCCCcEEECccc
Confidence 88874 67789999998752 356788888888888888888874
No 16
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=5.1e-39 Score=327.63 Aligned_cols=292 Identities=14% Similarity=0.131 Sum_probs=221.9
Q ss_pred CCcccEEEEEECCCCCEEEEEEcCCcEEEEeCCCC-----c-cccccceecCCCCCCceEEEEecCCCCeEEEEeCCCeE
Q 048012 147 GHTKIVSALAVDHSGSRVLSGSYDYTVRMYDFQGM-----N-SRLQSFRQLEPSEGHQVRNLSWSPTSDRFLCVTGSAQA 220 (616)
Q Consensus 147 ~H~~~V~~v~~sp~g~~lasgs~Dg~i~iwd~~~~-----~-~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~s~d~~v 220 (616)
.|...|.+++|+|+|++|++++ |+++|+||.... . ............+...|.+++|++++ +|++++.||.|
T Consensus 28 ~~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~-~l~~~s~dg~v 105 (344)
T 4gqb_B 28 CMERQLEAARYRSDGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGER-GILVASDSGAV 105 (344)
T ss_dssp SCCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTT-EEEEEETTSEE
T ss_pred cccCCEEEEEECCCCCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCC-eEEEEECCCEE
Confidence 5677899999999999999888 778888873210 0 00001111111234569999999984 78899999999
Q ss_pred EEEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEEEECCCccccceEEeeeccCCCCc
Q 048012 221 KIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPGRV 300 (616)
Q Consensus 221 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~ 300 (616)
+|||+...+.... ......+|...|++++|+|++ .+|++|+.|++|+|||+.+++....+ .+|..
T Consensus 106 ~lWd~~~~~~~~~--------~~~~~~~H~~~V~~v~~spdg-~~l~sgs~d~~i~iwd~~~~~~~~~~------~~h~~ 170 (344)
T 4gqb_B 106 ELWELDENETLIV--------SKFCKYEHDDIVSTVSVLSSG-TQAVSGSKDICIKVWDLAQQVVLSSY------RAHAA 170 (344)
T ss_dssp EEEEECTTSSCEE--------EEEEEECCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTTEEEEEE------CCCSS
T ss_pred EEEeccCCCceeE--------eeccccCCCCCEEEEEECCCC-CEEEEEeCCCeEEEEECCCCcEEEEE------cCcCC
Confidence 9999986543211 011245899999999999987 59999999999999999987654433 35667
Q ss_pred cEEEEEECCCCC-eEEEEeCCCcEEEEeCCCCCCCCCceeee--cCCCCCeEEEEEcC-CCCeEEEEecCCcEEEEeCCC
Q 048012 301 AVTTCAWDCDGK-CIAGGIGDGSIQVWNLKPGWGSRPDIHVE--KGHSDDITALKFSS-DGRILLSRSFDGSLKVWDLRK 376 (616)
Q Consensus 301 ~v~~~~~sp~g~-~l~~g~~dg~I~iwd~~~~~~~~~~~~~~--~~h~~~V~~l~~sp-dg~~l~s~s~Dg~v~lwd~~~ 376 (616)
.|++++|++++. +|++|+.||+|+|||++++ .....+ ..|...+.+++|+| ++++|++|+.||+|+|||+++
T Consensus 171 ~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~----~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~ 246 (344)
T 4gqb_B 171 QVTCVAASPHKDSVFLSCSEDNRILLWDTRCP----KPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKS 246 (344)
T ss_dssp CEEEEEECSSCTTEEEEEETTSCEEEEETTSS----SCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC
T ss_pred ceEEEEecCCCCCceeeecccccccccccccc----ceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCC
Confidence 899999999885 7899999999999999976 344333 45666799999999 567889999999999999997
Q ss_pred CCCcceEecCCCCCCcceeEEECCCC-CEEEEeeccccccCCCceEEEEeCCCCceEEEEecCCCCCeEEEEEcCCCCcE
Q 048012 377 MKEPLKVFEDLPNNYAQTNVAFSPDE-QLFLTGTSVERESTTGGLLCFYDREKLELVSRVGISPACSVVQCAWHPKLNQI 455 (616)
Q Consensus 377 ~~~~~~~~~~~~~~~~v~~v~fspdg-~~l~~gs~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l 455 (616)
. .++..+..+ ...|++++|+|++ ++|++|+ .|+.|+|||+.+++++.. . .|...|.+++|+|++..|
T Consensus 247 ~-~~~~~~~~h--~~~v~~v~fsp~g~~~lasgs-------~D~~i~vwd~~~~~~~~~-~-~H~~~V~~v~~sp~~~~l 314 (344)
T 4gqb_B 247 T-SCVLSSAVH--SQCVTGLVFSPHSVPFLASLS-------EDCSLAVLDSSLSELFRS-Q-AHRDFVRDATWSPLNHSL 314 (344)
T ss_dssp ---CCEEEECC--SSCEEEEEECSSSSCCEEEEE-------TTSCEEEECTTCCEEEEE-C-CCSSCEEEEEECSSSTTE
T ss_pred C-cEEEEEcCC--CCCEEEEEEccCCCeEEEEEe-------CCCeEEEEECCCCcEEEE-c-CCCCCEEEEEEeCCCCeE
Confidence 5 456666654 4559999999998 5789998 899999999999987653 3 477889999999998877
Q ss_pred EEEeccCCCCceEEEeccc
Q 048012 456 FATAGDKSQGGTHILYDPR 474 (616)
Q Consensus 456 ~~~~~d~~~~~~~~v~~~~ 474 (616)
+++++. ++.+++|++.
T Consensus 315 las~s~---D~~v~~w~v~ 330 (344)
T 4gqb_B 315 LTTVGW---DHQVVHHVVP 330 (344)
T ss_dssp EEEEET---TSCEEEEECC
T ss_pred EEEEcC---CCeEEEEECC
Confidence 655442 6777777764
No 17
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.5e-38 Score=320.16 Aligned_cols=307 Identities=16% Similarity=0.237 Sum_probs=225.0
Q ss_pred ceEEecCCcccEEEEEECCCCCEEEEEEcCCcEEEEeCCCCccccccceecCC-CCCCceEEEEecCCCCeEEEEeCCCe
Q 048012 141 NEIVLKGHTKIVSALAVDHSGSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEP-SEGHQVRNLSWSPTSDRFLCVTGSAQ 219 (616)
Q Consensus 141 ~~~~l~~H~~~V~~v~~sp~g~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~-~~~~~v~~l~~sp~g~~l~~~s~d~~ 219 (616)
....|.+|...|++++|+++ +||+|+.|++|+||++..... .....+.. .|...|.+++|+|++++|++++.|+.
T Consensus 6 ~~~~~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~--~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~ 81 (330)
T 2hes_X 6 LIKSLKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDF--TLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDST 81 (330)
T ss_dssp EEEEEECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCC--EEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSC
T ss_pred cceeeccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCe--EEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCc
Confidence 35578999999999999987 999999999999999976321 12222322 37788999999999999999999999
Q ss_pred EEEEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEEEECCCccccceEEeeeccCCCC
Q 048012 220 AKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPGR 299 (616)
Q Consensus 220 v~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~ 299 (616)
|+||++....... .....+..+.+|...|.+++|+|++ .+|++|+.|++|+|||+............ ...|.
T Consensus 82 v~iw~~~~~~~~~-----~~~~~~~~~~~h~~~V~~v~~sp~g-~~las~s~D~~v~iwd~~~~~~~~~~~~~--~~~h~ 153 (330)
T 2hes_X 82 VSIWAKEESADRT-----FEMDLLAIIEGHENEVKGVAWSNDG-YYLATCSRDKSVWIWETDESGEEYECISV--LQEHS 153 (330)
T ss_dssp EEEEEC------------CCCEEEEEEC----CEEEEEECTTS-CEEEEEETTSCEEEEECCTTCCCCEEEEE--ECCCS
T ss_pred EEEEEcccCcCcc-----ccceeEEEEcCCCCcEEEEEECCCC-CEEEEEeCCCEEEEEeccCCCCCeEEEEE--eccCC
Confidence 9999986421100 0001234467999999999999987 59999999999999999543221111111 13566
Q ss_pred ccEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCCCCCceeeecCCCCCeEEEEEcCC--CCeEEEEecCCcEEEEeCCCC
Q 048012 300 VAVTTCAWDCDGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHSDDITALKFSSD--GRILLSRSFDGSLKVWDLRKM 377 (616)
Q Consensus 300 ~~v~~~~~sp~g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~spd--g~~l~s~s~Dg~v~lwd~~~~ 377 (616)
..|.+++|+|++++|++|+.|++|++||+..+ ....+..+.+|...|.+++|+|+ +.+|++++.|++|+|||++..
T Consensus 154 ~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~--~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~ 231 (330)
T 2hes_X 154 QDVKHVIWHPSEALLASSSYDDTVRIWKDYDD--DWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGD 231 (330)
T ss_dssp SCEEEEEECSSSSEEEEEETTSCEEEEEEETT--EEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEE
T ss_pred CceEEEEECCCCCEEEEEcCCCeEEEEECCCC--CeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCC
Confidence 68999999999999999999999999998754 22466788899999999999998 778999999999999999753
Q ss_pred CC-------cceEecCCCCCCcceeEEECCCCCEEEEeeccccccCCCceEEEEeCCCCc--eEEEEecCCCC-CeEEEE
Q 048012 378 KE-------PLKVFEDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREKLE--LVSRVGISPAC-SVVQCA 447 (616)
Q Consensus 378 ~~-------~~~~~~~~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~-~v~~~~ 447 (616)
.. ....+.. .+...|.+++|++++ +|++++ .||.|+|||..+++ .+......|.. .|.+++
T Consensus 232 ~~~~~~~~~~~~~~~~-~h~~~v~~v~~s~~~-~l~s~~-------~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~ 302 (330)
T 2hes_X 232 DEDDQQEWVCEAILPD-VHKRQVYNVAWGFNG-LIASVG-------ADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVK 302 (330)
T ss_dssp CTTSCEEEEEEEECCS-CCSSCEEEEEECTTS-CEEEEE-------TTSCEEEEEEETTEEEEEEEESCTTTTSCEEEEE
T ss_pred CccccceeEEeeeccc-ccccceEEEEEcCCC-EEEEEe-------CCCEEEEEEcCCCceEEEeccccccccceEEEEE
Confidence 21 1222221 245679999999765 788888 89999999998774 33333233544 788999
Q ss_pred EcC--CCCcEEEEeccCCCCceEEEeccc
Q 048012 448 WHP--KLNQIFATAGDKSQGGTHILYDPR 474 (616)
Q Consensus 448 ~~p--~~~~l~~~~~d~~~~~~~~v~~~~ 474 (616)
|+| ++..|++++. ++.++||++.
T Consensus 303 ~~~~~~~~~las~s~----Dg~v~~W~~~ 327 (330)
T 2hes_X 303 WLELNGKTILATGGD----DGIVNFWSLE 327 (330)
T ss_dssp EC-----CCEEEEET----TSEEEEEEC-
T ss_pred EecCCCceEEEEecC----CCcEEEEEec
Confidence 998 5666766665 6677777754
No 18
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=9.3e-38 Score=341.86 Aligned_cols=308 Identities=22% Similarity=0.374 Sum_probs=260.7
Q ss_pred ceEEecCCcccEEEEEECCCCCEEEEEEcCCcEEEEeCCCCccccccceecCCCCCCceEEEEecCCCCeEEEEeCCCeE
Q 048012 141 NEIVLKGHTKIVSALAVDHSGSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSDRFLCVTGSAQA 220 (616)
Q Consensus 141 ~~~~l~~H~~~V~~v~~sp~g~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~s~d~~v 220 (616)
....+.+|...|++++|+|++.+|++++.|+.|++|+.... .......|...|.+++|+|++..|++++.++.|
T Consensus 213 ~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~i~~w~~~~~------~~~~~~~~~~~v~~v~~~~d~~~l~~~~~d~~i 286 (577)
T 2ymu_A 213 LLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQ------LLQTLTGHSSSVNGVAFRPDGQTIASASDDKTV 286 (577)
T ss_dssp EEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSC------EEEEECCCSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred EEEEEecCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCC------EEEEEecCCCCEEEEEEcCCCCEEEEEeCCCEE
Confidence 34567899999999999999999999999999999997542 122334577789999999999999999999999
Q ss_pred EEEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEEEECCCccccceEEeeeccCCCCc
Q 048012 221 KIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPGRV 300 (616)
Q Consensus 221 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~ 300 (616)
++|+..+..+ ..+.+|...|.+++|+|++ .+|++++.|++|++||+.... ...+ ..+..
T Consensus 287 ~~w~~~~~~~-------------~~~~~h~~~v~~~~~~~~~-~~l~t~~~d~~i~~w~~~~~~-~~~~------~~~~~ 345 (577)
T 2ymu_A 287 KLWNRNGQLL-------------QTLTGHSSSVWGVAFSPDG-QTIASASDDKTVKLWNRNGQH-LQTL------TGHSS 345 (577)
T ss_dssp EEEETTSCEE-------------EEECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTSCE-EEEE------CCCSS
T ss_pred EEEeCCCcEE-------------EEEecCCCCeEEEEECCCC-CEEEEEeCCCeEEEEeCCCCe-eEEE------eCCCC
Confidence 9999876543 2357899999999999987 599999999999999986532 2111 24555
Q ss_pred cEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCCCCCceeeecCCCCCeEEEEEcCCCCeEEEEecCCcEEEEeCCCCCCc
Q 048012 301 AVTTCAWDCDGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHSDDITALKFSSDGRILLSRSFDGSLKVWDLRKMKEP 380 (616)
Q Consensus 301 ~v~~~~~sp~g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~v~lwd~~~~~~~ 380 (616)
.|.+++|+|++++|++|+.||.|++||... ..+..+.+|...|++|+|+|++++|++++.|+.|+|||.. ...
T Consensus 346 ~v~~~~~s~~g~~l~~~~~dg~v~~~~~~~-----~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~~--~~~ 418 (577)
T 2ymu_A 346 SVWGVAFSPDGQTIASASDDKTVKLWNRNG-----QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN--GQL 418 (577)
T ss_dssp CEEEEEECTTSSEEEEEETTSEEEEEETTC-----CEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTT--CCE
T ss_pred CEEEEEECCCCCEEEEEeCCCEEEEEcCCC-----CEEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeCC--CCE
Confidence 899999999999999999999999999653 5777889999999999999999999999999999999964 344
Q ss_pred ceEecCCCCCCcceeEEECCCCCEEEEeeccccccCCCceEEEEeCCCCceEEEEecCCCCCeEEEEEcCCCCcEEEEec
Q 048012 381 LKVFEDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREKLELVSRVGISPACSVVQCAWHPKLNQIFATAG 460 (616)
Q Consensus 381 ~~~~~~~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~ 460 (616)
+..+..+ ...|++++|+|++++|++++ .|+.|++||+ +++.+..+.. |...|.+++|+|++.+|++++.
T Consensus 419 ~~~~~~~--~~~v~~~~~s~d~~~l~~~~-------~d~~v~~w~~-~~~~~~~~~~-~~~~v~~~~~spd~~~las~~~ 487 (577)
T 2ymu_A 419 LQTLTGH--SSSVWGVAFSPDDQTIASAS-------DDKTVKLWNR-NGQLLQTLTG-HSSSVRGVAFSPDGQTIASASD 487 (577)
T ss_dssp EEEEECC--SSCEEEEEECTTSSEEEEEE-------TTSEEEEEET-TSCEEEEEEC-CSSCEEEEEECTTSCEEEEEET
T ss_pred EEEecCC--CCCeEEEEECCCCCEEEEEc-------CCCEEEEEEC-CCCEEEEEcC-CCCCEEEEEEcCCCCEEEEEeC
Confidence 5555554 45699999999999999999 8999999996 5677777764 6788999999999999999987
Q ss_pred cCCCCceEEEec------------------ccCCCCCcEEEEecCCcceeccccc
Q 048012 461 DKSQGGTHILYD------------------PRLSERGALVCVARAPRKKSVDDFE 497 (616)
Q Consensus 461 d~~~~~~~~v~~------------------~~~s~~g~~l~s~~~d~~~~~wd~~ 497 (616)
++.+++|+ ++|+|+|++|++++.|+.|++||..
T Consensus 488 ----d~~i~iw~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~~ 538 (577)
T 2ymu_A 488 ----DKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN 538 (577)
T ss_dssp ----TSEEEEEETTSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTT
T ss_pred ----CCEEEEEcCCCCEEEEEeCCCCCEEEEEEcCCCCEEEEEECcCEEEEEeCC
Confidence 55666665 6689999999999999999999973
No 19
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.3e-39 Score=338.05 Aligned_cols=323 Identities=14% Similarity=0.276 Sum_probs=257.3
Q ss_pred CcccEEEEEECCCCC-EEEEE----------EcCCcEEEEeCCCCccccccceecCCCCCCceEEEEecCCCCeEEEEeC
Q 048012 148 HTKIVSALAVDHSGS-RVLSG----------SYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSDRFLCVTG 216 (616)
Q Consensus 148 H~~~V~~v~~sp~g~-~lasg----------s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~s~ 216 (616)
+...|.+++|+|+|+ +|++| +.|+.|+|||+.+.... ... ....+...|.+++|+|++.+|++++.
T Consensus 11 ~~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~-~~~--~~~~~~~~v~~~~~s~~~~~l~~~~~ 87 (416)
T 2pm9_A 11 EFSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSE-KPI--ASLQVDSKFNDLDWSHNNKIIAGALD 87 (416)
T ss_dssp EEEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGC-SCS--CCCCCSSCEEEEEECSSSSCEEEEES
T ss_pred hhhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCC-cEE--EEEecCCceEEEEECCCCCeEEEEcc
Confidence 456789999999997 99999 89999999999865321 111 11236678999999999999999999
Q ss_pred CCeEEEEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEEEECCCccccc---eEEeee
Q 048012 217 SAQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQK---QVIKPK 293 (616)
Q Consensus 217 d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~---~~~~~~ 293 (616)
|+.|+||++....... ..+..+.+|...|++++|+|++..+|++++.|++|++||+.+..... ......
T Consensus 88 dg~v~vw~~~~~~~~~--------~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~ 159 (416)
T 2pm9_A 88 NGSLELYSTNEANNAI--------NSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPG 159 (416)
T ss_dssp SSCEEEECCSSTTSCC--------CEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCC
T ss_pred CCeEEEeecccccccc--------cchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccc
Confidence 9999999998621000 12344678999999999999855799999999999999998765110 011111
Q ss_pred ccCCCCccEEEEEECCC-CCeEEEEeCCCcEEEEeCCCCCCCCCceeeecCC------CCCeEEEEEcCCC-CeEEEEec
Q 048012 294 LARPGRVAVTTCAWDCD-GKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGH------SDDITALKFSSDG-RILLSRSF 365 (616)
Q Consensus 294 ~~~~~~~~v~~~~~sp~-g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~h------~~~V~~l~~spdg-~~l~s~s~ 365 (616)
....|...|.+++|+|+ +.+|++++.||.|++||++++ ..+..+..| ...|.+++|+|++ .+|++++.
T Consensus 160 ~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~----~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~ 235 (416)
T 2pm9_A 160 QSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAK----KEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATG 235 (416)
T ss_dssp CSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTT----EEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEEC
T ss_pred cccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCC----CcceEEeccccccccCCceEEEEECCCCCCEEEEEEC
Confidence 12345668999999999 789999999999999999875 455555555 7889999999997 68999999
Q ss_pred CC---cEEEEeCCCCCCcceEec-CCCCCCcceeEEECC-CCCEEEEeeccccccCCCceEEEEeCCCCceEEEEecCCC
Q 048012 366 DG---SLKVWDLRKMKEPLKVFE-DLPNNYAQTNVAFSP-DEQLFLTGTSVERESTTGGLLCFYDREKLELVSRVGISPA 440 (616)
Q Consensus 366 Dg---~v~lwd~~~~~~~~~~~~-~~~~~~~v~~v~fsp-dg~~l~~gs~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 440 (616)
|+ .|++||+++...++..+. . +...|++++|+| ++++|++++ .||.|+|||+.+++++..+.. |.
T Consensus 236 d~~~~~i~~~d~~~~~~~~~~~~~~--~~~~v~~~~~s~~~~~~l~s~~-------~dg~v~~wd~~~~~~~~~~~~-~~ 305 (416)
T 2pm9_A 236 SDNDPSILIWDLRNANTPLQTLNQG--HQKGILSLDWCHQDEHLLLSSG-------RDNTVLLWNPESAEQLSQFPA-RG 305 (416)
T ss_dssp CSSSCCCCEEETTSTTSCSBCCCSC--CSSCEEEEEECSSCSSCEEEEE-------SSSEEEEECSSSCCEEEEEEC-SS
T ss_pred CCCCceEEEEeCCCCCCCcEEeecC--ccCceeEEEeCCCCCCeEEEEe-------CCCCEEEeeCCCCccceeecC-CC
Confidence 98 999999998666666654 3 445699999999 999999999 899999999999999998874 66
Q ss_pred CCeEEEEEcCCC-CcEEEEeccCCCCceEEEecc----------------------------------------------
Q 048012 441 CSVVQCAWHPKL-NQIFATAGDKSQGGTHILYDP---------------------------------------------- 473 (616)
Q Consensus 441 ~~v~~~~~~p~~-~~l~~~~~d~~~~~~~~v~~~---------------------------------------------- 473 (616)
..|.+++|+|++ ..|++++. ++.+.+|++
T Consensus 306 ~~v~~~~~s~~~~~~l~s~~~----d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (416)
T 2pm9_A 306 NWCFKTKFAPEAPDLFACASF----DNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTW 381 (416)
T ss_dssp SCCCCEEECTTCTTEEEECCS----SSEEEEEESCCCCCSSCC----------------------CCSCCCSSCCCCCST
T ss_pred CceEEEEECCCCCCEEEEEec----CCcEEEEEccCCCCCcccccccccccCCcccccccccccccccccccccccCCcc
Confidence 789999999998 56666665 566777753
Q ss_pred --------cCCCCCcEEEEecCCcceecccccCC
Q 048012 474 --------RLSERGALVCVARAPRKKSVDDFEVA 499 (616)
Q Consensus 474 --------~~s~~g~~l~s~~~d~~~~~wd~~~~ 499 (616)
+|+|+|++|++++.|+.|+||++.+.
T Consensus 382 ~~~~~~~~~~s~dg~~la~~~~d~~v~~w~~~~~ 415 (416)
T 2pm9_A 382 YGEPSPAAHWAFGGKLVQITPDGKGVSITNPKIS 415 (416)
T ss_dssp TCCCSCCCEEETTTEEECBCTTSSCBCCBCCCCC
T ss_pred ccCCccceEEeeCCeEEEEeCCCCeEEEEEeccC
Confidence 36778888888888888999887653
No 20
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=6.4e-37 Score=311.30 Aligned_cols=304 Identities=18% Similarity=0.213 Sum_probs=232.1
Q ss_pred eEEecCCcccEEEEEECCC-CCEEEEEEcCCcEEEEeCCCCccccccceecCCCCCCceEEEEecCCCCeEEEEeCCCeE
Q 048012 142 EIVLKGHTKIVSALAVDHS-GSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSDRFLCVTGSAQA 220 (616)
Q Consensus 142 ~~~l~~H~~~V~~v~~sp~-g~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~s~d~~v 220 (616)
..+|+||++.|++|+|+|+ +++|||||.|++|+|||+................|...|.+++|+|++++|++++.|+.|
T Consensus 31 ~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i 110 (340)
T 4aow_A 31 RGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTL 110 (340)
T ss_dssp EEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEE
T ss_pred EEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEcccccc
Confidence 4478999999999999997 689999999999999999875433333333445678899999999999999999999999
Q ss_pred EEEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEEEECCCccccceEEeeeccCCCCc
Q 048012 221 KIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPGRV 300 (616)
Q Consensus 221 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~ 300 (616)
++|+......... ...+...+..+.+++.+ .+|++++.|+.+++||+....... .....+..
T Consensus 111 ~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~-~~l~s~s~d~~~~~~d~~~~~~~~-----~~~~~~~~ 172 (340)
T 4aow_A 111 RLWDLTTGTTTRR------------FVGHTKDVLSVAFSSDN-RQIVSGSRDKTIKLWNTLGVCKYT-----VQDESHSE 172 (340)
T ss_dssp EEEETTTTEEEEE------------EECCSSCEEEEEECTTS-SCEEEEETTSCEEEECTTSCEEEE-----ECSSSCSS
T ss_pred eEEeecccceeee------------ecCCCCceeEEEEeecC-ccceeecCCCeEEEEEeCCCceEE-----EEeccccC
Confidence 9999987764322 34566778888999977 589999999999999987543221 12234556
Q ss_pred cEEEEEECCCC--CeEEEEeCCCcEEEEeCCCCCCCCCceeeecCCCCCeEEEEEcCCCCeEEEEecCCcEEEEeCCCCC
Q 048012 301 AVTTCAWDCDG--KCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHSDDITALKFSSDGRILLSRSFDGSLKVWDLRKMK 378 (616)
Q Consensus 301 ~v~~~~~sp~g--~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~v~lwd~~~~~ 378 (616)
.+.+++|++++ .++++++.|+.|++||++++ ..+..+.+|...|++|+|+|++++|++++.|++|+|||+++..
T Consensus 173 ~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~----~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~ 248 (340)
T 4aow_A 173 WVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANC----KLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGK 248 (340)
T ss_dssp CEEEEEECSCSSSCEEEEEETTSCEEEEETTTT----EEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTE
T ss_pred cccceEEccCCCCcEEEEEcCCCEEEEEECCCC----ceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCc
Confidence 89999998764 57889999999999999976 6778889999999999999999999999999999999998743
Q ss_pred CcceEecCCCCCCcceeEEECCCCCEEEEeeccccccCCCceEEEEeCCCCceEEEEecCCCCCeEEEEEcCCCCcEEEE
Q 048012 379 EPLKVFEDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREKLELVSRVGISPACSVVQCAWHPKLNQIFAT 458 (616)
Q Consensus 379 ~~~~~~~~~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~ 458 (616)
.+..+.. ...+.+++|+|++.+++++ .|+.|+|||+.++..+..+.... +...
T Consensus 249 -~~~~~~~---~~~v~~~~~~~~~~~~~~~--------~d~~i~iwd~~~~~~~~~~~~~~---------------~~~~ 301 (340)
T 4aow_A 249 -HLYTLDG---GDIINALCFSPNRYWLCAA--------TGPSIKIWDLEGKIIVDELKQEV---------------ISTS 301 (340)
T ss_dssp -EEEEEEC---SSCEEEEEECSSSSEEEEE--------ETTEEEEEETTTTEEEEEECCC--------------------
T ss_pred -eeeeecC---CceEEeeecCCCCceeecc--------CCCEEEEEECCCCeEEEeccccc---------------eeee
Confidence 3444432 3459999999998776655 58999999999988877764210 0000
Q ss_pred eccCCCCceEEEecccCCCCCcEEEEecCCcceecccccC
Q 048012 459 AGDKSQGGTHILYDPRLSERGALVCVARAPRKKSVDDFEV 498 (616)
Q Consensus 459 ~~d~~~~~~~~v~~~~~s~~g~~l~s~~~d~~~~~wd~~~ 498 (616)
.. ++...|+.++|+|+|.+|++++.|+.|+|||+.+
T Consensus 302 ~~----~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~t 337 (340)
T 4aow_A 302 SK----AEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTI 337 (340)
T ss_dssp ------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEEC
T ss_pred cc----CCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCC
Confidence 00 3333445555556666666666666666666544
No 21
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=4.7e-37 Score=343.93 Aligned_cols=316 Identities=16% Similarity=0.201 Sum_probs=244.5
Q ss_pred ceEEecCCcccEEEEEECCCC-CEEEEEEcCCcEEEEeCCCCccccccceecCCCCCCceEEEEecCCCCeEEEEeCCCe
Q 048012 141 NEIVLKGHTKIVSALAVDHSG-SRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSDRFLCVTGSAQ 219 (616)
Q Consensus 141 ~~~~l~~H~~~V~~v~~sp~g-~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~s~d~~ 219 (616)
..-.|.+|++.|++|+|++++ .+|+|||.|++|+||++................|...|.+++|+|++++|++++.|+.
T Consensus 374 ~~~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~ 453 (694)
T 3dm0_A 374 LKGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGE 453 (694)
T ss_dssp EEEEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSE
T ss_pred hhhhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCc
Confidence 345789999999999999875 7999999999999999976443222223344568889999999999999999999999
Q ss_pred EEEEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEEEECCCccccceEEeeeccCCCC
Q 048012 220 AKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPGR 299 (616)
Q Consensus 220 v~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~ 299 (616)
|+|||+..... +..+.+|...|.+++|+|++ .+|++|+.|++|+|||+..... ........+|.
T Consensus 454 v~vwd~~~~~~------------~~~~~~h~~~v~~~~~s~~~-~~l~s~s~D~~i~iwd~~~~~~---~~~~~~~~~h~ 517 (694)
T 3dm0_A 454 LRLWDLAAGVS------------TRRFVGHTKDVLSVAFSLDN-RQIVSASRDRTIKLWNTLGECK---YTISEGGEGHR 517 (694)
T ss_dssp EEEEETTTTEE------------EEEEECCSSCEEEEEECTTS-SCEEEEETTSCEEEECTTSCEE---EEECSSTTSCS
T ss_pred EEEEECCCCcc------------eeEEeCCCCCEEEEEEeCCC-CEEEEEeCCCEEEEEECCCCcc---eeeccCCCCCC
Confidence 99999987653 23357899999999999987 5899999999999999864321 11122234567
Q ss_pred ccEEEEEECCCC--CeEEEEeCCCcEEEEeCCCCCCCCCceeeecCCCCCeEEEEEcCCCCeEEEEecCCcEEEEeCCCC
Q 048012 300 VAVTTCAWDCDG--KCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHSDDITALKFSSDGRILLSRSFDGSLKVWDLRKM 377 (616)
Q Consensus 300 ~~v~~~~~sp~g--~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~v~lwd~~~~ 377 (616)
..|.+++|+|++ .+|++|+.||+|++||++++ .....+.+|...|++|+|+|++++|++++.||+|+|||++++
T Consensus 518 ~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~----~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~ 593 (694)
T 3dm0_A 518 DWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNC----KLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEG 593 (694)
T ss_dssp SCEEEEEECSCSSSCEEEEEETTSCEEEEETTTC----CEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTT
T ss_pred CcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCC----cEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCC
Confidence 789999999987 58999999999999999875 577788999999999999999999999999999999999875
Q ss_pred CCcceEecCCCCCCcceeEEECCCCCEEEEeeccccccCCCceEEEEeCCCCceEEEEecCCCCCeEEEEEcCCCCcEEE
Q 048012 378 KEPLKVFEDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREKLELVSRVGISPACSVVQCAWHPKLNQIFA 457 (616)
Q Consensus 378 ~~~~~~~~~~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~ 457 (616)
.. +..+ .....+.+++|+|++.+|++++ ++.|+|||+.+++++..+.......... ....+. .
T Consensus 594 ~~-~~~~---~~~~~v~~~~~sp~~~~l~~~~--------~~~i~iwd~~~~~~~~~~~~~~~~~~~~--~~~~~~---~ 656 (694)
T 3dm0_A 594 KK-LYSL---EANSVIHALCFSPNRYWLCAAT--------EHGIKIWDLESKSIVEDLKVDLKAEAEK--ADNSGP---A 656 (694)
T ss_dssp EE-EECC---BCSSCEEEEEECSSSSEEEEEE--------TTEEEEEETTTTEEEEEECCCCC-----------------
T ss_pred ce-EEEe---cCCCcEEEEEEcCCCcEEEEEc--------CCCEEEEECCCCCChhhhcccccccccc--cccccc---c
Confidence 42 3322 3345699999999999998876 5669999999999988886432211100 000000 0
Q ss_pred EeccCCCCceEEEecccCCCCCcEEEEecCCcceeccccc
Q 048012 458 TAGDKSQGGTHILYDPRLSERGALVCVARAPRKKSVDDFE 497 (616)
Q Consensus 458 ~~~d~~~~~~~~v~~~~~s~~g~~l~s~~~d~~~~~wd~~ 497 (616)
.. ..+.+.+..++|||+|.+|++++.|+.|++|++.
T Consensus 657 ~~----~~~~~~~~~l~~spdg~~l~sgs~Dg~i~iW~i~ 692 (694)
T 3dm0_A 657 AT----KRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGIG 692 (694)
T ss_dssp --------CCCCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred cC----CceeEEeeeEEEcCCCCEEEEEcCCCeEEEEecc
Confidence 01 1333456678888899999999999999999863
No 22
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=2.6e-37 Score=323.52 Aligned_cols=266 Identities=16% Similarity=0.269 Sum_probs=231.5
Q ss_pred CCCCCceEEEEecCCCCeEEEEeCCCeEEEEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCC
Q 048012 193 PSEGHQVRNLSWSPTSDRFLCVTGSAQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSED 272 (616)
Q Consensus 193 ~~~~~~v~~l~~sp~g~~l~~~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~D 272 (616)
..|...|++++|+|++.+|++++.|+.|+|||+.+... ...+.+|...|.+++|+|++ .+|++|+.|
T Consensus 105 ~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~------------~~~l~~h~~~V~~v~~~~~~-~~l~sgs~D 171 (410)
T 1vyh_C 105 SGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDF------------ERTLKGHTDSVQDISFDHSG-KLLASCSAD 171 (410)
T ss_dssp ECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCC------------CEEECCCSSCEEEEEECTTS-SEEEEEETT
T ss_pred cccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcE------------EEEEeccCCcEEEEEEcCCC-CEEEEEeCC
Confidence 35778899999999999999999999999999987654 33467899999999999987 599999999
Q ss_pred CCEEEEECCCccccceEEeeeccCCCCccEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCCCCCceeeecCCCCCeEEEE
Q 048012 273 GSLRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWDCDGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHSDDITALK 352 (616)
Q Consensus 273 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~ 352 (616)
++|+|||+.+......+ .+|...|.+++|+|++++|++|+.|++|++||++++ ..+..+.+|...|.++.
T Consensus 172 ~~i~iwd~~~~~~~~~~------~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~----~~~~~~~~h~~~v~~~~ 241 (410)
T 1vyh_C 172 MTIKLWDFQGFECIRTM------HGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTG----YCVKTFTGHREWVRMVR 241 (410)
T ss_dssp SCCCEEETTSSCEEECC------CCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTC----CEEEEEECCSSCEEEEE
T ss_pred CeEEEEeCCCCceeEEE------cCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCC----cEEEEEeCCCccEEEEE
Confidence 99999999876543322 356668999999999999999999999999999976 57788899999999999
Q ss_pred EcCCCCeEEEEecCCcEEEEeCCCCCCcceEecCCCCCCcceeEEECCC--------------------CCEEEEeeccc
Q 048012 353 FSSDGRILLSRSFDGSLKVWDLRKMKEPLKVFEDLPNNYAQTNVAFSPD--------------------EQLFLTGTSVE 412 (616)
Q Consensus 353 ~spdg~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~v~~v~fspd--------------------g~~l~~gs~~~ 412 (616)
|++++++|++++.|++|++||+++. .....+.. +...|.+++|+|+ +.+|++|+
T Consensus 242 ~~~~g~~l~s~s~D~~v~vwd~~~~-~~~~~~~~--h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs--- 315 (410)
T 1vyh_C 242 PNQDGTLIASCSNDQTVRVWVVATK-ECKAELRE--HRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGS--- 315 (410)
T ss_dssp ECTTSSEEEEEETTSCEEEEETTTC-CEEEEECC--CSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEE---
T ss_pred ECCCCCEEEEEcCCCeEEEEECCCC-ceeeEecC--CCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEe---
Confidence 9999999999999999999999864 34455544 4456999999996 67899999
Q ss_pred cccCCCceEEEEeCCCCceEEEEecCCCCCeEEEEEcCCCCcEEEEeccCCCCceEEEec-------------------c
Q 048012 413 RESTTGGLLCFYDREKLELVSRVGISPACSVVQCAWHPKLNQIFATAGDKSQGGTHILYD-------------------P 473 (616)
Q Consensus 413 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~~~~~~~v~~-------------------~ 473 (616)
.|+.|+|||+.+++++..+.. |...|.+++|+|++.+|++++. ++.+++|+ +
T Consensus 316 ----~D~~i~iwd~~~~~~~~~~~~-h~~~v~~v~~~~~g~~l~s~s~----D~~i~vwd~~~~~~~~~~~~h~~~v~~l 386 (410)
T 1vyh_C 316 ----RDKTIKMWDVSTGMCLMTLVG-HDNWVRGVLFHSGGKFILSCAD----DKTLRVWDYKNKRCMKTLNAHEHFVTSL 386 (410)
T ss_dssp ----TTSEEEEEETTTTEEEEEEEC-CSSCEEEEEECSSSSCEEEEET----TTEEEEECCTTSCCCEEEECCSSCEEEE
T ss_pred ----CCCeEEEEECCCCceEEEEEC-CCCcEEEEEEcCCCCEEEEEeC----CCeEEEEECCCCceEEEEcCCCCcEEEE
Confidence 899999999999999988864 7788999999999999999998 55666665 6
Q ss_pred cCCCCCcEEEEecCCcceecccc
Q 048012 474 RLSERGALVCVARAPRKKSVDDF 496 (616)
Q Consensus 474 ~~s~~g~~l~s~~~d~~~~~wd~ 496 (616)
+|+|++.+|++++.|+.+++|++
T Consensus 387 ~~~~~~~~l~sgs~D~~i~vW~~ 409 (410)
T 1vyh_C 387 DFHKTAPYVVTGSVDQTVKVWEC 409 (410)
T ss_dssp EECSSSSCEEEEETTSEEEEEC-
T ss_pred EEcCCCCEEEEEeCCCcEEEEeC
Confidence 68899999999999999999985
No 23
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=3.1e-37 Score=311.82 Aligned_cols=269 Identities=20% Similarity=0.347 Sum_probs=227.8
Q ss_pred CCCCCceEEEEecCC----CCeEEEEeCCCeEEEEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEE
Q 048012 193 PSEGHQVRNLSWSPT----SDRFLCVTGSAQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILT 268 (616)
Q Consensus 193 ~~~~~~v~~l~~sp~----g~~l~~~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s 268 (616)
..|...|.+++|+++ +.+|++++.|+.|+||++...... ....+.+|...|.+++|++++ .++++
T Consensus 29 ~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~----------~~~~l~gh~~~v~~~~~~~~~-~~l~s 97 (321)
T 3ow8_A 29 QAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLD----------LQWSLEGHQLGVVSVDISHTL-PIAAS 97 (321)
T ss_dssp TSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEE----------EEEEECCCSSCEEEEEECSSS-SEEEE
T ss_pred ccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCee----------eeeeeccCCCCEEEEEECCCC-CEEEE
Confidence 357888999999985 668999999999999998765431 122367999999999999987 59999
Q ss_pred EeCCCCEEEEECCCccccceEEeeeccCCCCccEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCCCCCceeeecCCCCCe
Q 048012 269 SSEDGSLRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWDCDGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHSDDI 348 (616)
Q Consensus 269 ~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V 348 (616)
++.|++|++||+.+++....+. .+...+.+++|+|++++|++|+.||.|++||++++ .....+..|...|
T Consensus 98 ~s~D~~i~lWd~~~~~~~~~~~------~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~----~~~~~~~~~~~~v 167 (321)
T 3ow8_A 98 SSLDAHIRLWDLENGKQIKSID------AGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESG----KKEYSLDTRGKFI 167 (321)
T ss_dssp EETTSEEEEEETTTTEEEEEEE------CCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTC----SEEEEEECSSSCE
T ss_pred EeCCCcEEEEECCCCCEEEEEe------CCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCC----ceeEEecCCCceE
Confidence 9999999999998876554432 23346889999999999999999999999999976 5667778899999
Q ss_pred EEEEEcCCCCeEEEEecCCcEEEEeCCCCCCcceEecCCCCCCcceeEEECCCCCEEEEeeccccccCCCceEEEEeCCC
Q 048012 349 TALKFSSDGRILLSRSFDGSLKVWDLRKMKEPLKVFEDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREK 428 (616)
Q Consensus 349 ~~l~~spdg~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~ 428 (616)
.+++|+|++++|++++.|+.|+|||++++ ..+..+.. +...|++++|+|++++|++|+ .|+.|+|||+.+
T Consensus 168 ~~~~~spdg~~lasg~~dg~i~iwd~~~~-~~~~~~~~--h~~~v~~l~~spd~~~l~s~s-------~dg~i~iwd~~~ 237 (321)
T 3ow8_A 168 LSIAYSPDGKYLASGAIDGIINIFDIATG-KLLHTLEG--HAMPIRSLTFSPDSQLLVTAS-------DDGYIKIYDVQH 237 (321)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEETTTT-EEEEEECC--CSSCCCEEEECTTSCEEEEEC-------TTSCEEEEETTT
T ss_pred EEEEECCCCCEEEEEcCCCeEEEEECCCC-cEEEEEcc--cCCceeEEEEcCCCCEEEEEc-------CCCeEEEEECCC
Confidence 99999999999999999999999999864 44555554 445699999999999999999 899999999999
Q ss_pred CceEEEEecCCCCCeEEEEEcCCCCcEEEEeccCCCCceEEEec-------------------ccCCCCCcEEEEecCCc
Q 048012 429 LELVSRVGISPACSVVQCAWHPKLNQIFATAGDKSQGGTHILYD-------------------PRLSERGALVCVARAPR 489 (616)
Q Consensus 429 ~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~~~~~~~v~~-------------------~~~s~~g~~l~s~~~d~ 489 (616)
++++..+.. |...|.+++|+|++.+|++++.| +.++||+ ++|+++|.+|++++.|+
T Consensus 238 ~~~~~~~~~-h~~~v~~~~~sp~~~~l~s~s~D----~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~ 312 (321)
T 3ow8_A 238 ANLAGTLSG-HASWVLNVAFCPDDTHFVSSSSD----KSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQ 312 (321)
T ss_dssp CCEEEEECC-CSSCEEEEEECTTSSEEEEEETT----SCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTC
T ss_pred cceeEEEcC-CCCceEEEEECCCCCEEEEEeCC----CcEEEEeCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEEeCCC
Confidence 999888864 67889999999999999999984 4555554 67899999999999999
Q ss_pred ceeccccc
Q 048012 490 KKSVDDFE 497 (616)
Q Consensus 490 ~~~~wd~~ 497 (616)
.+++||..
T Consensus 313 ~i~vwd~p 320 (321)
T 3ow8_A 313 EIHIYDCP 320 (321)
T ss_dssp CEEEEECC
T ss_pred eEEEEeCC
Confidence 99999964
No 24
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.4e-37 Score=321.47 Aligned_cols=323 Identities=14% Similarity=0.192 Sum_probs=253.4
Q ss_pred EecCCcccEEEEEECCCCC-EEEEEEcCCcEEEEeC----CCCcc-----ccccceecCCC------CCCceEEEEecCC
Q 048012 144 VLKGHTKIVSALAVDHSGS-RVLSGSYDYTVRMYDF----QGMNS-----RLQSFRQLEPS------EGHQVRNLSWSPT 207 (616)
Q Consensus 144 ~l~~H~~~V~~v~~sp~g~-~lasgs~Dg~i~iwd~----~~~~~-----~~~~~~~~~~~------~~~~v~~l~~sp~ 207 (616)
....|...|++++|+|+|. +||+|+.||.|+||++ .++.. ....+...... |...|.+++|+|+
T Consensus 40 ~~~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 119 (425)
T 1r5m_A 40 KEIVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHD 119 (425)
T ss_dssp EEEEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTT
T ss_pred eeeeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCC
Confidence 4455679999999999999 9999999999999999 66441 11122221111 4558999999999
Q ss_pred CCeEEEEeCCCeEEEEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEEEECCCccccc
Q 048012 208 SDRFLCVTGSAQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQK 287 (616)
Q Consensus 208 g~~l~~~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~ 287 (616)
+++|++++.++.|+||+..+..+ ..+.+|...|.+++|+|++ .+|++++.|+.|++||+.+++...
T Consensus 120 ~~~l~~~~~dg~i~i~~~~~~~~-------------~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~ 185 (425)
T 1r5m_A 120 GNSIVTGVENGELRLWNKTGALL-------------NVLNFHRAPIVSVKWNKDG-THIISMDVENVTILWNVISGTVMQ 185 (425)
T ss_dssp SSEEEEEETTSCEEEEETTSCEE-------------EEECCCCSCEEEEEECTTS-SEEEEEETTCCEEEEETTTTEEEE
T ss_pred CCEEEEEeCCCeEEEEeCCCCee-------------eeccCCCccEEEEEECCCC-CEEEEEecCCeEEEEECCCCcEEE
Confidence 99999999999999999655443 2346899999999999987 599999999999999998766544
Q ss_pred eEEeeecc---------CCCCccEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCCCCCceeeecCCCCCeEEEEEcCCCC
Q 048012 288 QVIKPKLA---------RPGRVAVTTCAWDCDGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHSDDITALKFSSDGR 358 (616)
Q Consensus 288 ~~~~~~~~---------~~~~~~v~~~~~sp~g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~ 358 (616)
.+...... ......+.+++|++++ .+++++.||.|++||++.+ ..+..+..|...|.+++|+|+++
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~i~~~d~~~~----~~~~~~~~~~~~i~~~~~~~~~~ 260 (425)
T 1r5m_A 186 HFELKETGGSSINAENHSGDGSLGVDVEWVDDD-KFVIPGPKGAIFVYQITEK----TPTGKLIGHHGPISVLEFNDTNK 260 (425)
T ss_dssp EECCC---------------CCCBSCCEEEETT-EEEEECGGGCEEEEETTCS----SCSEEECCCSSCEEEEEEETTTT
T ss_pred EeeccccCccceeeccccCCcceeeEEEEcCCC-EEEEEcCCCeEEEEEcCCC----ceeeeeccCCCceEEEEECCCCC
Confidence 33221110 0000117888998875 5888999999999999976 56677789999999999999999
Q ss_pred eEEEEecCCcEEEEeCCCCCCcceEecCCCCCCcceeEEECCCCCEEEEeeccccccCCCceEEEEeCCCCceEEEEecC
Q 048012 359 ILLSRSFDGSLKVWDLRKMKEPLKVFEDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREKLELVSRVGIS 438 (616)
Q Consensus 359 ~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~~~~~~~~~~~ 438 (616)
+|++++.|+.|++||+++.. .+..+.. +...+.+++|+|++ +|++++ .++.|++||+.+++.+..+..
T Consensus 261 ~l~~~~~d~~i~i~d~~~~~-~~~~~~~--~~~~i~~~~~~~~~-~l~~~~-------~d~~i~i~d~~~~~~~~~~~~- 328 (425)
T 1r5m_A 261 LLLSASDDGTLRIWHGGNGN-SQNCFYG--HSQSIVSASWVGDD-KVISCS-------MDGSVRLWSLKQNTLLALSIV- 328 (425)
T ss_dssp EEEEEETTSCEEEECSSSBS-CSEEECC--CSSCEEEEEEETTT-EEEEEE-------TTSEEEEEETTTTEEEEEEEC-
T ss_pred EEEEEcCCCEEEEEECCCCc-cceEecC--CCccEEEEEECCCC-EEEEEe-------CCCcEEEEECCCCcEeEeccc-
Confidence 99999999999999998743 4555544 44569999999999 999998 899999999999999888874
Q ss_pred CCCCeEEEEEcCCCCcEEEEeccCC-----------------------------------CCceE--EEecccCCCCCcE
Q 048012 439 PACSVVQCAWHPKLNQIFATAGDKS-----------------------------------QGGTH--ILYDPRLSERGAL 481 (616)
Q Consensus 439 ~~~~v~~~~~~p~~~~l~~~~~d~~-----------------------------------~~~~~--~v~~~~~s~~g~~ 481 (616)
+...|.+++|+|+++.|++++.|+. .++.. .|..++|+|+|.+
T Consensus 329 ~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 408 (425)
T 1r5m_A 329 DGVPIFAGRISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNK 408 (425)
T ss_dssp TTCCEEEEEECTTSSEEEEEETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEECTTSSE
T ss_pred CCccEEEEEEcCCCCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCCCce
Confidence 6678999999999999999988640 01111 4555678899999
Q ss_pred EEEecCCcceeccccc
Q 048012 482 VCVARAPRKKSVDDFE 497 (616)
Q Consensus 482 l~s~~~d~~~~~wd~~ 497 (616)
|++++.|+.+++|++.
T Consensus 409 l~~~~~dg~i~iw~~~ 424 (425)
T 1r5m_A 409 ISVAYSLQEGSVVAIP 424 (425)
T ss_dssp EEEEESSSCCEEEECC
T ss_pred EEEEecCceEEEEeec
Confidence 9999999999999874
No 25
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=3e-37 Score=316.77 Aligned_cols=306 Identities=15% Similarity=0.179 Sum_probs=216.5
Q ss_pred EEEECCCCCEEEEEEcCCcEEEEeCCCCccccccceecCCCCCCceEEEEecCCCCeEEEEeC------CCeEEEEECCC
Q 048012 154 ALAVDHSGSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSDRFLCVTG------SAQAKIYDRDG 227 (616)
Q Consensus 154 ~v~~sp~g~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~s~------d~~v~vwd~~~ 227 (616)
.+.+.+++ +++.++.+.....|++.... ...|...|.+++|||||++|++++. |+.|++|+...
T Consensus 10 g~d~g~~~-~~~~~~g~~~~~~w~~p~~~---------p~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~ 79 (357)
T 4g56_B 10 GVDLGTEN-LYFQSNGSSKGSAWGRPVTA---------PACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPE 79 (357)
T ss_dssp ----------------------------------------CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC
T ss_pred CCCCCccc-eEEecCCCccccccCCCCCC---------cccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCC
Confidence 34444554 44455557788999875421 1247778999999999999999997 67888888765
Q ss_pred CeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEEEECCCccccceEEeeeccCCCCccEEEEEE
Q 048012 228 LTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAW 307 (616)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 307 (616)
..... .......+|...|.+++|+|++ .+++++.||+|+|||+.+++....... ...+|...|++++|
T Consensus 80 ~~~~~--------~~~~~~~~~~~~V~~~~~s~d~--~~l~~s~dg~v~lWd~~~~~~~~~~~~--~~~~h~~~V~~v~~ 147 (357)
T 4g56_B 80 GAPNE--------SLCTAGVQTEAGVTDVAWVSEK--GILVASDSGAVELWEILEKESLLVNKF--AKYEHDDIVKTLSV 147 (357)
T ss_dssp ---CG--------GGCSEEEECSSCEEEEEEETTT--EEEEEETTSCEEEC--------CCCCE--EECCCSSCEEEEEE
T ss_pred CCcce--------eEecccCCCCCCEEEEEEcCCC--CEEEEECCCEEEEeeccccceeEEEee--ccCCCCCCEEEEEE
Confidence 43211 0122235688899999999975 577889999999999987654332221 12356678999999
Q ss_pred CCCCCeEEEEeCCCcEEEEeCCCCCCCCCceeeecCCCCCeEEEEEcCCCC-eEEEEecCCcEEEEeCCCCCCcceEecC
Q 048012 308 DCDGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHSDDITALKFSSDGR-ILLSRSFDGSLKVWDLRKMKEPLKVFED 386 (616)
Q Consensus 308 sp~g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~-~l~s~s~Dg~v~lwd~~~~~~~~~~~~~ 386 (616)
+|++++|++|+.||+|++||++++ ..+..+.+|...|++|+|++++. +|++++.|++|+|||+++... ...+..
T Consensus 148 spdg~~l~sgs~dg~v~iwd~~~~----~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~-~~~~~~ 222 (357)
T 4g56_B 148 FSDGTQAVSGGKDFSVKVWDLSQK----AVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKP-ATRIDF 222 (357)
T ss_dssp CSSSSEEEEEETTSCEEEEETTTT----EEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSC-BCBCCC
T ss_pred CCCCCEEEEEeCCCeEEEEECCCC----cEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCce-eeeeee
Confidence 999999999999999999999976 67888899999999999999875 789999999999999987543 444444
Q ss_pred CCCCCcceeEEECCC-CCEEEEeeccccccCCCceEEEEeCCCCceEEEEecCCCCCeEEEEEcCCCC-cEEEEeccCCC
Q 048012 387 LPNNYAQTNVAFSPD-EQLFLTGTSVERESTTGGLLCFYDREKLELVSRVGISPACSVVQCAWHPKLN-QIFATAGDKSQ 464 (616)
Q Consensus 387 ~~~~~~v~~v~fspd-g~~l~~gs~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~-~l~~~~~d~~~ 464 (616)
..+...+++++|+|+ +.+|++|+ .|+.|+|||+.+++++..+.. +...|.+++|+|++. +|++++.
T Consensus 223 ~~~~~~v~~v~~sp~~~~~la~g~-------~d~~i~~wd~~~~~~~~~~~~-~~~~v~~l~~sp~~~~~lasgs~---- 290 (357)
T 4g56_B 223 CASDTIPTSVTWHPEKDDTFACGD-------ETGNVSLVNIKNPDSAQTSAV-HSQNITGLAYSYHSSPFLASISE---- 290 (357)
T ss_dssp TTCCSCEEEEEECTTSTTEEEEEE-------SSSCEEEEESSCGGGCEEECC-CSSCEEEEEECSSSSCCEEEEET----
T ss_pred ccccccccchhhhhcccceEEEee-------cccceeEEECCCCcEeEEEec-cceeEEEEEEcCCCCCEEEEEeC----
Confidence 455667999999998 46788888 899999999999999998875 677899999999985 5666666
Q ss_pred CceEEEec------------------ccCCC-CCcEEEEecCCcceecccccC
Q 048012 465 GGTHILYD------------------PRLSE-RGALVCVARAPRKKSVDDFEV 498 (616)
Q Consensus 465 ~~~~~v~~------------------~~~s~-~g~~l~s~~~d~~~~~wd~~~ 498 (616)
++.++||+ ++|+| ++.+|++++.|+.|++|++..
T Consensus 291 D~~i~iwd~~~~~~~~~~~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~ 343 (357)
T 4g56_B 291 DCTVAVLDADFSEVFRDLSHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPS 343 (357)
T ss_dssp TSCEEEECTTSCEEEEECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC-
T ss_pred CCEEEEEECCCCcEeEECCCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCC
Confidence 55666665 67898 899999999999999999854
No 26
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=8.6e-37 Score=311.18 Aligned_cols=254 Identities=19% Similarity=0.168 Sum_probs=205.5
Q ss_pred ecCCcccEEEEEECCCCCEEEEEEcCCcEEEEeCCCCccccccceecCCCCCCceEEEEecCCCCeEEEEeCCCeEEEEE
Q 048012 145 LKGHTKIVSALAVDHSGSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSDRFLCVTGSAQAKIYD 224 (616)
Q Consensus 145 l~~H~~~V~~v~~sp~g~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~s~d~~v~vwd 224 (616)
...|...|++++|+|++ +|++|+.||+|+|||+.++.. ..........|...|++|+|+|+|++|++++.|+.|+|||
T Consensus 78 ~~~~~~~v~~~~~s~d~-~l~~~s~dg~v~lWd~~~~~~-~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd 155 (344)
T 4gqb_B 78 GVQTEAGVADLTWVGER-GILVASDSGAVELWELDENET-LIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWD 155 (344)
T ss_dssp EEEESSCEEEEEEETTT-EEEEEETTSEEEEEEECTTSS-CEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred eeccCCCEEEEEEeCCC-eEEEEECCCEEEEEeccCCCc-eeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEE
Confidence 34567889999999985 788999999999999987532 2223333446788899999999999999999999999999
Q ss_pred CCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEEEECCCccccceEEeeeccCCCCccEEE
Q 048012 225 RDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPGRVAVTT 304 (616)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~ 304 (616)
+.+... +..+.+|...|++++|++++..+|++|+.|++|+|||+++++....+... .+...+++
T Consensus 156 ~~~~~~------------~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~----~~~~~~~~ 219 (344)
T 4gqb_B 156 LAQQVV------------LSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCS----APGYLPTS 219 (344)
T ss_dssp TTTTEE------------EEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC--------CCCEEE
T ss_pred CCCCcE------------EEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecc----eeecccee
Confidence 987764 34467999999999999998889999999999999999987655443221 23336899
Q ss_pred EEECCC-CCeEEEEeCCCcEEEEeCCCCCCCCCceeeecCCCCCeEEEEEcCCC-CeEEEEecCCcEEEEeCCCCCCcce
Q 048012 305 CAWDCD-GKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHSDDITALKFSSDG-RILLSRSFDGSLKVWDLRKMKEPLK 382 (616)
Q Consensus 305 ~~~sp~-g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~spdg-~~l~s~s~Dg~v~lwd~~~~~~~~~ 382 (616)
++|+|+ +++|++|+.||+|+|||++++ ..+..+.+|...|++|+|+|++ ++|++++.|++|+|||+++.. +.
T Consensus 220 ~~~~p~~~~~l~sg~~dg~v~~wd~~~~----~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~--~~ 293 (344)
T 4gqb_B 220 LAWHPQQSEVFVFGDENGTVSLVDTKST----SCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSE--LF 293 (344)
T ss_dssp EEECSSCTTEEEEEETTSEEEEEESCC------CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCE--EE
T ss_pred eeecCCCCcceEEeccCCcEEEEECCCC----cEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCc--EE
Confidence 999984 678899999999999999976 5778889999999999999998 589999999999999998643 22
Q ss_pred EecCCCCCCcceeEEECCCCCE-EEEeeccccccCCCceEEEEeCCCCce
Q 048012 383 VFEDLPNNYAQTNVAFSPDEQL-FLTGTSVERESTTGGLLCFYDREKLEL 431 (616)
Q Consensus 383 ~~~~~~~~~~v~~v~fspdg~~-l~~gs~~~~~~~~dg~i~iwd~~~~~~ 431 (616)
.+. .|...|++++|+|+++. |++++ .|+.|++|++.+..+
T Consensus 294 ~~~--~H~~~V~~v~~sp~~~~llas~s-------~D~~v~~w~v~~~~~ 334 (344)
T 4gqb_B 294 RSQ--AHRDFVRDATWSPLNHSLLTTVG-------WDHQVVHHVVPTEPL 334 (344)
T ss_dssp EEC--CCSSCEEEEEECSSSTTEEEEEE-------TTSCEEEEECCC---
T ss_pred EEc--CCCCCEEEEEEeCCCCeEEEEEc-------CCCeEEEEECCCCCC
Confidence 333 35567999999999874 66787 899999999987544
No 27
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=1.4e-35 Score=300.62 Aligned_cols=293 Identities=14% Similarity=0.210 Sum_probs=239.0
Q ss_pred eEEecCCcccEEEEEECCCCCEEEEEEcCCcEEEEeCCCCccccccceecCCCCCCceEEEEecCCCCeEEEEeCCCeEE
Q 048012 142 EIVLKGHTKIVSALAVDHSGSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSDRFLCVTGSAQAK 221 (616)
Q Consensus 142 ~~~l~~H~~~V~~v~~sp~g~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~s~d~~v~ 221 (616)
.+...+|...|++++|+|++++|++++ ||.|++|++................+...|.+++|+|++++|++++.++.|+
T Consensus 44 ~~~~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~ 122 (337)
T 1gxr_A 44 QINTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLS 122 (337)
T ss_dssp EEEEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEE
T ss_pred cceeccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEE
Confidence 344568999999999999999999999 9999999998653222211112224677899999999999999999999999
Q ss_pred EEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEEEECCCccccceEEeeeccCCCCcc
Q 048012 222 IYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPGRVA 301 (616)
Q Consensus 222 vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~ 301 (616)
+||+...... ....+..|...|.+++|+|++ .+|++++.|+.|++||+.+.+....+ ..|...
T Consensus 123 ~~d~~~~~~~----------~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~v~~~d~~~~~~~~~~------~~~~~~ 185 (337)
T 1gxr_A 123 IWDLAAPTPR----------IKAELTSSAPACYALAISPDS-KVCFSCCSDGNIAVWDLHNQTLVRQF------QGHTDG 185 (337)
T ss_dssp EEECCCC--E----------EEEEEECSSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTTEEEEEE------CCCSSC
T ss_pred EEECCCCCcc----------eeeecccCCCceEEEEECCCC-CEEEEEeCCCcEEEEeCCCCceeeee------ecccCc
Confidence 9999876521 122356788899999999977 59999999999999999876544333 235558
Q ss_pred EEEEEECCCCCeEEEEeCCCcEEEEeCCCCCCCCCceeeecCCCCCeEEEEEcCCCCeEEEEecCCcEEEEeCCCCCCcc
Q 048012 302 VTTCAWDCDGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHSDDITALKFSSDGRILLSRSFDGSLKVWDLRKMKEPL 381 (616)
Q Consensus 302 v~~~~~sp~g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~v~lwd~~~~~~~~ 381 (616)
|.+++|+|++++|++++.||.|++||++++ ..+.. ..|...|.+++|+|++++|++++.|+.|++||+++.. .
T Consensus 186 i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~----~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~--~ 258 (337)
T 1gxr_A 186 ASCIDISNDGTKLWTGGLDNTVRSWDLREG----RQLQQ-HDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPD--K 258 (337)
T ss_dssp EEEEEECTTSSEEEEEETTSEEEEEETTTT----EEEEE-EECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSC--E
T ss_pred eEEEEECCCCCEEEEEecCCcEEEEECCCC----ceEee-ecCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCC--e
Confidence 999999999999999999999999999875 33333 3577889999999999999999999999999998754 2
Q ss_pred eEecCCCCCCcceeEEECCCCCEEEEeeccccccCCCceEEEEeCCCCceEEEEecCCCCCeEEEEEcCCCCcEEEEecc
Q 048012 382 KVFEDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREKLELVSRVGISPACSVVQCAWHPKLNQIFATAGD 461 (616)
Q Consensus 382 ~~~~~~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d 461 (616)
..+. .+...+.+++|+|++++|++++ .+|.|++||+.+++.+.... +...|.+++|+|++++|++++.
T Consensus 259 ~~~~--~~~~~v~~~~~~~~~~~l~~~~-------~dg~i~~~~~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~~~~~- 326 (337)
T 1gxr_A 259 YQLH--LHESCVLSLKFAYCGKWFVSTG-------KDNLLNAWRTPYGASIFQSK--ESSSVLSCDISVDDKYIVTGSG- 326 (337)
T ss_dssp EEEC--CCSSCEEEEEECTTSSEEEEEE-------TTSEEEEEETTTCCEEEEEE--CSSCEEEEEECTTSCEEEEEET-
T ss_pred EEEc--CCccceeEEEECCCCCEEEEec-------CCCcEEEEECCCCeEEEEec--CCCcEEEEEECCCCCEEEEecC-
Confidence 2333 3456699999999999999999 89999999999999886553 5678999999999988888887
Q ss_pred CCCCceEEEeccc
Q 048012 462 KSQGGTHILYDPR 474 (616)
Q Consensus 462 ~~~~~~~~v~~~~ 474 (616)
++.+.+|++.
T Consensus 327 ---dg~i~iw~~~ 336 (337)
T 1gxr_A 327 ---DKKATVYEVI 336 (337)
T ss_dssp ---TSCEEEEEEE
T ss_pred ---CCeEEEEEEe
Confidence 6788888864
No 28
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=3.9e-36 Score=306.43 Aligned_cols=270 Identities=15% Similarity=0.256 Sum_probs=226.7
Q ss_pred CCCCCCceEEEEecCCCCeEEEEeCCCeEEEEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeC
Q 048012 192 EPSEGHQVRNLSWSPTSDRFLCVTGSAQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSE 271 (616)
Q Consensus 192 ~~~~~~~v~~l~~sp~g~~l~~~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~ 271 (616)
...|...|.+++|+|++++|++++.|+.|+|||+..... +..+..|...|.+++|+|++ .+|++|+.
T Consensus 51 l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~------------~~~~~~~~~~v~~~~~s~~~-~~l~s~~~ 117 (340)
T 1got_B 51 LRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNK------------VHAIPLRSSWVMTCAYAPSG-NYVACGGL 117 (340)
T ss_dssp ECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCE------------EEEEECSSSCEEEEEECTTS-SEEEEEET
T ss_pred ecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCc------------ceEeecCCccEEEEEECCCC-CEEEEEeC
Confidence 345778899999999999999999999999999886653 22346788899999999987 59999999
Q ss_pred CCCEEEEECCCccccceEEeeeccCCCCccEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCCCCCceeeecCCCCCeEEE
Q 048012 272 DGSLRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWDCDGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHSDDITAL 351 (616)
Q Consensus 272 Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l 351 (616)
|+.|++||+.+........... .+|...|.++.|++++. |++++.||+|++||++++ ..+..+.+|...|.++
T Consensus 118 d~~v~iw~~~~~~~~~~~~~~~--~~h~~~v~~~~~~~~~~-l~s~s~d~~i~~wd~~~~----~~~~~~~~h~~~v~~~ 190 (340)
T 1got_B 118 DNICSIYNLKTREGNVRVSREL--AGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETG----QQTTTFTGHTGDVMSL 190 (340)
T ss_dssp TCEEEEEETTTCSBSCEEEEEE--ECCSSCEEEEEEEETTE-EEEEETTSCEEEEETTTT----EEEEEECCCSSCEEEE
T ss_pred CCeEEEEECccCCCcceeEEEe--cCCCccEEEEEECCCCc-EEEEECCCcEEEEECCCC----cEEEEEcCCCCceEEE
Confidence 9999999998754332222222 25666899999998765 889999999999999976 5777889999999999
Q ss_pred EEcCCCCeEEEEecCCcEEEEeCCCCCCcceEecCCCCCCcceeEEECCCCCEEEEeeccccccCCCceEEEEeCCCCce
Q 048012 352 KFSSDGRILLSRSFDGSLKVWDLRKMKEPLKVFEDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREKLEL 431 (616)
Q Consensus 352 ~~spdg~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~~~~ 431 (616)
+|+|++++|++++.|++|++||+++. .+...+..+ ...|++++|+|++++|++|+ .||.|+|||+.+++.
T Consensus 191 ~~~~~~~~l~sg~~d~~v~~wd~~~~-~~~~~~~~h--~~~v~~v~~~p~~~~l~s~s-------~d~~v~iwd~~~~~~ 260 (340)
T 1got_B 191 SLAPDTRLFVSGACDASAKLWDVREG-MCRQTFTGH--ESDINAICFFPNGNAFATGS-------DDATCRLFDLRADQE 260 (340)
T ss_dssp EECTTSSEEEEEETTSCEEEEETTTC-SEEEEECCC--SSCEEEEEECTTSSEEEEEE-------TTSCEEEEETTTTEE
T ss_pred EECCCCCEEEEEeCCCcEEEEECCCC-eeEEEEcCC--cCCEEEEEEcCCCCEEEEEc-------CCCcEEEEECCCCcE
Confidence 99999999999999999999999864 445556553 45699999999999999999 899999999999988
Q ss_pred EEEEecC-CCCCeEEEEEcCCCCcEEEEeccCCCCceEEEec-------------------ccCCCCCcEEEEecCCcce
Q 048012 432 VSRVGIS-PACSVVQCAWHPKLNQIFATAGDKSQGGTHILYD-------------------PRLSERGALVCVARAPRKK 491 (616)
Q Consensus 432 ~~~~~~~-~~~~v~~~~~~p~~~~l~~~~~d~~~~~~~~v~~-------------------~~~s~~g~~l~s~~~d~~~ 491 (616)
+..+... +...|.+++|+|++..|++++. ++.+.+|+ ++|+|+|.+|++++.|+.+
T Consensus 261 ~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~----d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~i 336 (340)
T 1got_B 261 LMTYSHDNIICGITSVSFSKSGRLLLAGYD----DFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFL 336 (340)
T ss_dssp EEEECCTTCCSCEEEEEECTTSSEEEEEET----TSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCE
T ss_pred EEEEccCCcccceEEEEECCCCCEEEEECC----CCeEEEEEcccCcEeeEeecCCCcEEEEEEcCCCCEEEEEcCCccE
Confidence 8777532 2247999999999999999998 45566665 6689999999999999999
Q ss_pred eccc
Q 048012 492 SVDD 495 (616)
Q Consensus 492 ~~wd 495 (616)
++||
T Consensus 337 ~iWd 340 (340)
T 1got_B 337 KIWN 340 (340)
T ss_dssp EEEC
T ss_pred EecC
Confidence 9997
No 29
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=2.6e-36 Score=308.35 Aligned_cols=282 Identities=16% Similarity=0.237 Sum_probs=223.2
Q ss_pred CCC-ceEEEEecCCCCeEEEEeCCCeEEEEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCC
Q 048012 195 EGH-QVRNLSWSPTSDRFLCVTGSAQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDG 273 (616)
Q Consensus 195 ~~~-~v~~l~~sp~g~~l~~~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg 273 (616)
|.. .|.+++|+|+|++|++++.|+.|+||++.+...... .....+|...|.+++|+|++ .+|++|+.|+
T Consensus 14 h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~---------~~~~~~h~~~v~~~~~sp~g-~~l~s~s~D~ 83 (345)
T 3fm0_A 14 HPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICK---------SVLSEGHQRTVRKVAWSPCG-NYLASASFDA 83 (345)
T ss_dssp STTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEE---------EEECSSCSSCEEEEEECTTS-SEEEEEETTS
T ss_pred CCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceee---------eeeccccCCcEEEEEECCCC-CEEEEEECCC
Confidence 444 799999999999999999999999999886643111 11246899999999999987 5999999999
Q ss_pred CEEEEECCCccccceEEeeeccCCCCccEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCCCCCceeeecCCCCCeEEEEE
Q 048012 274 SLRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWDCDGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHSDDITALKF 353 (616)
Q Consensus 274 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~ 353 (616)
+|+|||+....... + ....+|...|.+++|+|++++|++|+.|++|++||++.+. ....+..+.+|...|.+++|
T Consensus 84 ~v~iw~~~~~~~~~-~---~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~-~~~~~~~~~~h~~~v~~~~~ 158 (345)
T 3fm0_A 84 TTCIWKKNQDDFEC-V---TTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEED-EYECVSVLNSHTQDVKHVVW 158 (345)
T ss_dssp CEEEEEECCC-EEE-E---EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTS-CEEEEEEECCCCSCEEEEEE
T ss_pred cEEEEEccCCCeEE-E---EEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCC-CeEEEEEecCcCCCeEEEEE
Confidence 99999987643211 1 1123566789999999999999999999999999998652 22345677899999999999
Q ss_pred cCCCCeEEEEecCCcEEEEeCCCCCC-cceEecCCCCCCcceeEEECCCCCEEEEeeccccccCCCceEEEEeCCC----
Q 048012 354 SSDGRILLSRSFDGSLKVWDLRKMKE-PLKVFEDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREK---- 428 (616)
Q Consensus 354 spdg~~l~s~s~Dg~v~lwd~~~~~~-~~~~~~~~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~---- 428 (616)
+|++++|++++.|++|+|||++.... +...+.. +...|++++|+|++++|++++ .|+.|+|||...
T Consensus 159 ~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~--h~~~v~~l~~sp~g~~l~s~s-------~D~~v~iW~~~~~~~~ 229 (345)
T 3fm0_A 159 HPSQELLASASYDDTVKLYREEEDDWVCCATLEG--HESTVWSLAFDPSGQRLASCS-------DDRTVRIWRQYLPGNE 229 (345)
T ss_dssp CSSSSCEEEEETTSCEEEEEEETTEEEEEEEECC--CSSCEEEEEECTTSSEEEEEE-------TTSCEEEEEEECTTCT
T ss_pred CCCCCEEEEEeCCCcEEEEEecCCCEEEEEEecC--CCCceEEEEECCCCCEEEEEe-------CCCeEEEeccccCCCC
Confidence 99999999999999999999986431 2334444 456699999999999999999 899999999632
Q ss_pred -----------CceEEEEecCCCCCeEEEEEcCCCCcEEEEeccCC------------------------CCceEEEecc
Q 048012 429 -----------LELVSRVGISPACSVVQCAWHPKLNQIFATAGDKS------------------------QGGTHILYDP 473 (616)
Q Consensus 429 -----------~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~------------------------~~~~~~v~~~ 473 (616)
.+++..+...|...|.+++|+|++..|++++.|+. .+|...|+.+
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v 309 (345)
T 3fm0_A 230 QGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCV 309 (345)
T ss_dssp TCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEE
T ss_pred ccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEe
Confidence 13344554446788999999999999999998530 1223335557
Q ss_pred cCCCCC-cEEEEecCCcceecccccCCc
Q 048012 474 RLSERG-ALVCVARAPRKKSVDDFEVAP 500 (616)
Q Consensus 474 ~~s~~g-~~l~s~~~d~~~~~wd~~~~~ 500 (616)
+|+|++ .+|++++.|+.|++|++....
T Consensus 310 ~~~p~~~~~laS~s~Dg~v~~W~~~~~~ 337 (345)
T 3fm0_A 310 AWNPKEPGLLASCSDDGEVAFWKYQRPE 337 (345)
T ss_dssp EECSSSTTEEEEEETTSCEEEEEECC--
T ss_pred EEeCCCceEEEEcCCCCcEEEEEecCCC
Confidence 789988 599999999999999986543
No 30
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.5e-35 Score=304.22 Aligned_cols=297 Identities=17% Similarity=0.211 Sum_probs=240.5
Q ss_pred cceEEecCCcccEEEEEECCCCCEEEEEEcCCcEEEEeCCCCccccccceecCCCCCCceEEEEecCCCCeEEEEeCCCe
Q 048012 140 SNEIVLKGHTKIVSALAVDHSGSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSDRFLCVTGSAQ 219 (616)
Q Consensus 140 ~~~~~l~~H~~~V~~v~~sp~g~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~s~d~~ 219 (616)
...+.|.+|...|++++|+|++++|++|+.||.|+|||+.+.. .......|...|.+++|+|++++|++++.|+.
T Consensus 23 ~~~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~-----~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~ 97 (369)
T 3zwl_B 23 MKAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGE-----RLGTLDGHTGTIWSIDVDCFTKYCVTGSADYS 97 (369)
T ss_dssp EEEEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCC-----EEEEECCCSSCEEEEEECTTSSEEEEEETTTE
T ss_pred cccEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCch-----hhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCe
Confidence 3456899999999999999999999999999999999988653 12223457778999999999999999999999
Q ss_pred EEEEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCC-----CCEEEEECCCccccceEEeee-
Q 048012 220 AKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSED-----GSLRIWDVNEFKSQKQVIKPK- 293 (616)
Q Consensus 220 v~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~D-----g~v~iwd~~~~~~~~~~~~~~- 293 (616)
|++||+........ +. |...|.+++|+|++ .+|++++.+ +.|++||+........+....
T Consensus 98 i~iwd~~~~~~~~~------------~~-~~~~v~~~~~~~~~-~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~ 163 (369)
T 3zwl_B 98 IKLWDVSNGQCVAT------------WK-SPVPVKRVEFSPCG-NYFLAILDNVMKNPGSINIYEIERDSATHELTKVSE 163 (369)
T ss_dssp EEEEETTTCCEEEE------------EE-CSSCEEEEEECTTS-SEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECS
T ss_pred EEEEECCCCcEEEE------------ee-cCCCeEEEEEccCC-CEEEEecCCccCCCCEEEEEEecCCccceeeccccc
Confidence 99999987654222 22 67789999999987 589999988 999999998765433322111
Q ss_pred ------ccCCCCccEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCCCCCceeeecCCCCCeEEEEEcCCCCeEEEEecCC
Q 048012 294 ------LARPGRVAVTTCAWDCDGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHSDDITALKFSSDGRILLSRSFDG 367 (616)
Q Consensus 294 ------~~~~~~~~v~~~~~sp~g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg 367 (616)
....+...+.+++|+|++++|++++.||.|++||+++. ...+..+..|...|.+++|+|++++|++++.|+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~ 240 (369)
T 3zwl_B 164 EPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNN---YEYVDSIDLHEKSISDMQFSPDLTYFITSSRDT 240 (369)
T ss_dssp SCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTT---TEEEEEEECCSSCEEEEEECTTSSEEEEEETTS
T ss_pred ceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCC---cEeEEEEecCCCceeEEEECCCCCEEEEecCCc
Confidence 11122227999999999999999999999999999872 257778889999999999999999999999999
Q ss_pred cEEEEeCCCCCCcceEecCCCCCCcceeEEECCCCCEEEEeeccccccCCCc--------------eEEEEeCCCCceEE
Q 048012 368 SLKVWDLRKMKEPLKVFEDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGG--------------LLCFYDREKLELVS 433 (616)
Q Consensus 368 ~v~lwd~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg--------------~i~iwd~~~~~~~~ 433 (616)
.|++||+++.. .+..+. ....+.+++|+|+++++++++ .++ .|++||+.+++.+.
T Consensus 241 ~i~v~d~~~~~-~~~~~~---~~~~~~~~~~~~~~~~l~~~~-------~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~ 309 (369)
T 3zwl_B 241 NSFLVDVSTLQ-VLKKYE---TDCPLNTAVITPLKEFIILGG-------GQEAKDVTTTSANEGKFEARFYHKIFEEEIG 309 (369)
T ss_dssp EEEEEETTTCC-EEEEEE---CSSCEEEEEECSSSSEEEEEE-------CCC-------------CEEEEEETTTCCEEE
T ss_pred eEEEEECCCCc-eeeeec---CCCCceeEEecCCCceEEEee-------cCCCceEEEEecCCCcceeEEEecCCCcchh
Confidence 99999998754 344443 445699999999999999998 555 89999999999988
Q ss_pred EEecCCCCCeEEEEEcCCCCcEEEEeccCCCCceEEEeccc
Q 048012 434 RVGISPACSVVQCAWHPKLNQIFATAGDKSQGGTHILYDPR 474 (616)
Q Consensus 434 ~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~~~~~~~v~~~~ 474 (616)
.+.. |...|.+++|+|++++|++++. ++.+.+|++.
T Consensus 310 ~~~~-~~~~v~~~~~s~~~~~l~s~~~----dg~v~iw~~~ 345 (369)
T 3zwl_B 310 RVQG-HFGPLNTVAISPQGTSYASGGE----DGFIRLHHFE 345 (369)
T ss_dssp EEEC-CSSCEEEEEECTTSSEEEEEET----TSEEEEEEEC
T ss_pred heec-ccCcEEEEEECCCCCEEEEEcC----CCeEEEEECc
Confidence 8864 6677888888888777777665 5566666654
No 31
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=4.5e-36 Score=303.10 Aligned_cols=277 Identities=17% Similarity=0.206 Sum_probs=227.2
Q ss_pred cCCCCCCceEEEEecCCC-CeEEEEeCCCeEEEEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEE
Q 048012 191 LEPSEGHQVRNLSWSPTS-DRFLCVTGSAQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTS 269 (616)
Q Consensus 191 ~~~~~~~~v~~l~~sp~g-~~l~~~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~ 269 (616)
....|...|.+++|+|++ ++|++++.|++|++|++.+... .....+..+.+|...|.+++|+|++ .+|++|
T Consensus 12 ~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~-------~~~~~~~~~~~h~~~v~~~~~s~dg-~~l~s~ 83 (319)
T 3frx_A 12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQ-------KFGVPVRSFKGHSHIVQDCTLTADG-AYALSA 83 (319)
T ss_dssp EECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETT-------EEEEEEEEEECCSSCEEEEEECTTS-SEEEEE
T ss_pred EEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCc-------cccccceEEeCCcccEEEEEECCCC-CEEEEE
Confidence 344688899999999965 7899999999999999863221 1112345578999999999999987 599999
Q ss_pred eCCCCEEEEECCCccccceEEeeeccCCCCccEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCCCCCceeeecCCCCCeE
Q 048012 270 SEDGSLRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWDCDGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHSDDIT 349 (616)
Q Consensus 270 s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~ 349 (616)
+.|++|+|||+.+++....+ .+|...|.+++|+|++.+|++|+.||+|++||++. ..+..+.+|...|.
T Consensus 84 s~D~~v~~wd~~~~~~~~~~------~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~-----~~~~~~~~h~~~v~ 152 (319)
T 3frx_A 84 SWDKTLRLWDVATGETYQRF------VGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKG-----QCLATLLGHNDWVS 152 (319)
T ss_dssp ETTSEEEEEETTTTEEEEEE------ECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTS-----CEEEEECCCSSCEE
T ss_pred eCCCEEEEEECCCCCeeEEE------ccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCC-----CeEEEEeccCCcEE
Confidence 99999999999987654443 24666899999999999999999999999999975 46778889999999
Q ss_pred EEEEcCC------CCeEEEEecCCcEEEEeCCCCCCcceEecCCCCCCcceeEEECCCCCEEEEeeccccccCCCceEEE
Q 048012 350 ALKFSSD------GRILLSRSFDGSLKVWDLRKMKEPLKVFEDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCF 423 (616)
Q Consensus 350 ~l~~spd------g~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~i 423 (616)
+++|+|. +.+|++++.|++|++||+++.. ....+.. +...|.+++|+|++++|++++ .||.|+|
T Consensus 153 ~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~-~~~~~~~--h~~~v~~~~~sp~g~~l~s~~-------~dg~i~i 222 (319)
T 3frx_A 153 QVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQ-IEADFIG--HNSNINTLTASPDGTLIASAG-------KDGEIML 222 (319)
T ss_dssp EEEECCC------CCEEEEEETTSCEEEEETTTTE-EEEEECC--CCSCEEEEEECTTSSEEEEEE-------TTCEEEE
T ss_pred EEEEccCCCCCCCccEEEEEeCCCEEEEEECCcch-hheeecC--CCCcEEEEEEcCCCCEEEEEe-------CCCeEEE
Confidence 9999984 4589999999999999998643 3344444 456699999999999999999 8999999
Q ss_pred EeCCCCceEEEEecCCCCCeEEEEEcCCCCcEEEEeccCC----------------------CCceEEEecccCCCCCcE
Q 048012 424 YDREKLELVSRVGISPACSVVQCAWHPKLNQIFATAGDKS----------------------QGGTHILYDPRLSERGAL 481 (616)
Q Consensus 424 wd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~----------------------~~~~~~v~~~~~s~~g~~ 481 (616)
||+.+++++..+.. ...|.+++|+|++..|+++..++. ..+...++.++|+|+|++
T Consensus 223 wd~~~~~~~~~~~~--~~~v~~~~~sp~~~~la~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~ 300 (319)
T 3frx_A 223 WNLAAKKAMYTLSA--QDEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQT 300 (319)
T ss_dssp EETTTTEEEEEEEC--CSCEEEEEECSSSSEEEEEETTEEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSE
T ss_pred EECCCCcEEEEecC--CCcEEEEEEcCCCCEEEEEcCCCcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCCE
Confidence 99999999988864 467999999999988888775310 001112345789999999
Q ss_pred EEEecCCcceecccccC
Q 048012 482 VCVARAPRKKSVDDFEV 498 (616)
Q Consensus 482 l~s~~~d~~~~~wd~~~ 498 (616)
|++++.|+.|++|++.+
T Consensus 301 l~sg~~Dg~i~vWd~~t 317 (319)
T 3frx_A 301 LFAGYTDNVIRVWQVMT 317 (319)
T ss_dssp EEEEETTSCEEEEEEEE
T ss_pred EEEeecCceEEEEEEee
Confidence 99999999999999854
No 32
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=6.5e-36 Score=315.60 Aligned_cols=303 Identities=15% Similarity=0.217 Sum_probs=232.6
Q ss_pred EecCCcccEEEEEECC-CCCEEEEEEcCCcEEEEeCCCCccccccceecCCCCCCceEEEEecC-CCCeEEEEeCCCeEE
Q 048012 144 VLKGHTKIVSALAVDH-SGSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSP-TSDRFLCVTGSAQAK 221 (616)
Q Consensus 144 ~l~~H~~~V~~v~~sp-~g~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp-~g~~l~~~s~d~~v~ 221 (616)
.+.+|...|+||+|+| ++.+||+|+.||+|+|||+...... .......|...|.+|+|+| ++.+|++++.|++|+
T Consensus 114 ~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~---~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~ 190 (435)
T 4e54_B 114 KAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKP---TFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTR 190 (435)
T ss_dssp EEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCC---EEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEE
T ss_pred cCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCce---eEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEE
Confidence 5678999999999999 5679999999999999999764321 1112335778899999998 688999999999999
Q ss_pred EEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEEEECCCccccceEEeeeccCCCCcc
Q 048012 222 IYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPGRVA 301 (616)
Q Consensus 222 vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~ 301 (616)
|||+.+..+..+ .....+...+.+++|+|++ .+|++|+.||+|++||+... .... ...|...
T Consensus 191 iwd~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~-~~l~~g~~dg~i~~wd~~~~-~~~~------~~~h~~~ 252 (435)
T 4e54_B 191 LQDFKGNILRVF----------ASSDTINIWFCSLDVSASS-RMVVTGDNVGNVILLNMDGK-ELWN------LRMHKKK 252 (435)
T ss_dssp EEETTSCEEEEE----------ECCSSCSCCCCCEEEETTT-TEEEEECSSSBEEEEESSSC-BCCC------SBCCSSC
T ss_pred EeeccCCceeEE----------eccCCCCccEEEEEECCCC-CEEEEEeCCCcEeeeccCcc-eeEE------Eecccce
Confidence 999987664332 2234455678899999987 59999999999999999642 2222 1356668
Q ss_pred EEEEEECCCCC-eEEEEeCCCcEEEEeCCCCCCCCCceeeecCCCCCeEEEEEcCCCCeEEEEecCCcEEEEeCCCCCCc
Q 048012 302 VTTCAWDCDGK-CIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHSDDITALKFSSDGRILLSRSFDGSLKVWDLRKMKEP 380 (616)
Q Consensus 302 v~~~~~sp~g~-~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~v~lwd~~~~~~~ 380 (616)
|++++|+|++. +|++|+.||+|+|||++... ....+....+|...|++|+|+|+|++|++++.||+|+|||++++..+
T Consensus 253 v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~-~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~ 331 (435)
T 4e54_B 253 VTHVALNPCCDWFLATASVDQTVKIWDLRQVR-GKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCP 331 (435)
T ss_dssp EEEEEECTTCSSEEEEEETTSBCCEEETTTCC-SSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSE
T ss_pred EEeeeecCCCceEEEEecCcceeeEEeccccc-ccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccc
Confidence 99999999876 78899999999999998763 22233455689999999999999999999999999999999976544
Q ss_pred ceEecCCCC----CCcceeEEECCCCCEEEEeeccc-----cccCCCceEEEEeCCCCceEEEEecCCCCCeEEE-EEcC
Q 048012 381 LKVFEDLPN----NYAQTNVAFSPDEQLFLTGTSVE-----RESTTGGLLCFYDREKLELVSRVGISPACSVVQC-AWHP 450 (616)
Q Consensus 381 ~~~~~~~~~----~~~v~~v~fspdg~~l~~gs~~~-----~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~-~~~p 450 (616)
... ..+.. ...+..+.|+|++.+++++.+.. .....++.|+|||..+++++..+...|...|.++ +|+|
T Consensus 332 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fsp 410 (435)
T 4e54_B 332 LGL-IPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNP 410 (435)
T ss_dssp EEE-CCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECT
T ss_pred eEE-ecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECC
Confidence 333 22221 12245678899988888876421 1122456899999999999988876677778776 6899
Q ss_pred CCCcEEEEeccCCCCceEEEeccc
Q 048012 451 KLNQIFATAGDKSQGGTHILYDPR 474 (616)
Q Consensus 451 ~~~~l~~~~~d~~~~~~~~v~~~~ 474 (616)
++..|++++ ++.++||++.
T Consensus 411 dg~~lasg~-----d~~i~iW~~~ 429 (435)
T 4e54_B 411 MGDTLASAM-----GYHILIWSQQ 429 (435)
T ss_dssp TSSCEEEEC-----SSEEEECCCC
T ss_pred CCCEEEEEc-----CCcEEEEECC
Confidence 988877654 4468888875
No 33
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=3.3e-36 Score=305.34 Aligned_cols=311 Identities=15% Similarity=0.168 Sum_probs=250.4
Q ss_pred CCcccEEEEEECCCCCEEEEEEcCCcEEEEeCCCCccccccceecCCCCCCceEEEEecCCCCeEEEEeCCCeEEEEECC
Q 048012 147 GHTKIVSALAVDHSGSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSDRFLCVTGSAQAKIYDRD 226 (616)
Q Consensus 147 ~H~~~V~~v~~sp~g~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~s~d~~v~vwd~~ 226 (616)
-|...|.+++|+|+|++++++..++.+.+|...... .... ...|...|.+++|+|++++|++++ ++.|++|++.
T Consensus 7 ~~~~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~---~~~~--~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~ 80 (337)
T 1gxr_A 7 MGSKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHA---RQIN--TLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDIS 80 (337)
T ss_dssp EEEEECCEEEECSSSCEEECCCCTTSSSSTTCCSEE---EEEE--EECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETT
T ss_pred ccCCceeEEEECCCCCEEEeecCCCcEeccccCCcc---ccce--eccCCCceEEEEEecCCcEEEEcC-CCeEEEEECC
Confidence 467789999999999999998888877777544321 1111 124778899999999999999988 9999999998
Q ss_pred CCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEEEECCCccccceEEeeeccCCCCccEEEEE
Q 048012 227 GLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPGRVAVTTCA 306 (616)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~ 306 (616)
........ ......+|...|.+++|+|++ .+|++++.|+.|++||+.+.+....... ..+...|.+++
T Consensus 81 ~~~~~~~~-------~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~~~d~~~~~~~~~~~~----~~~~~~i~~~~ 148 (337)
T 1gxr_A 81 HPGNKSPV-------SQLDCLNRDNYIRSCKLLPDG-CTLIVGGEASTLSIWDLAAPTPRIKAEL----TSSAPACYALA 148 (337)
T ss_dssp STTCCSCS-------EEEECSCTTSBEEEEEECTTS-SEEEEEESSSEEEEEECCCC--EEEEEE----ECSSSCEEEEE
T ss_pred CCCceeee-------ecccccCCCCcEEEEEEcCCC-CEEEEEcCCCcEEEEECCCCCcceeeec----ccCCCceEEEE
Confidence 65321100 011123788999999999987 5999999999999999987652221111 23445799999
Q ss_pred ECCCCCeEEEEeCCCcEEEEeCCCCCCCCCceeeecCCCCCeEEEEEcCCCCeEEEEecCCcEEEEeCCCCCCcceEecC
Q 048012 307 WDCDGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHSDDITALKFSSDGRILLSRSFDGSLKVWDLRKMKEPLKVFED 386 (616)
Q Consensus 307 ~sp~g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~ 386 (616)
|+|++++|++++.||.|++||++++ ..+..+..|...|.+++|+|++++|++++.|+.|++||+++.. .+..+.
T Consensus 149 ~~~~~~~l~~~~~dg~v~~~d~~~~----~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~-~~~~~~- 222 (337)
T 1gxr_A 149 ISPDSKVCFSCCSDGNIAVWDLHNQ----TLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGR-QLQQHD- 222 (337)
T ss_dssp ECTTSSEEEEEETTSCEEEEETTTT----EEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTE-EEEEEE-
T ss_pred ECCCCCEEEEEeCCCcEEEEeCCCC----ceeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEECCCCc-eEeeec-
Confidence 9999999999999999999999876 5777888899999999999999999999999999999998753 333332
Q ss_pred CCCCCcceeEEECCCCCEEEEeeccccccCCCceEEEEeCCCCceEEEEecCCCCCeEEEEEcCCCCcEEEEeccCCCCc
Q 048012 387 LPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREKLELVSRVGISPACSVVQCAWHPKLNQIFATAGDKSQGG 466 (616)
Q Consensus 387 ~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~~~~ 466 (616)
+...+.+++|+|++++|++++ .++.|++||+.+++... +. .+...|.+++|+|++++|++++. ++
T Consensus 223 --~~~~v~~~~~s~~~~~l~~~~-------~~~~i~~~~~~~~~~~~-~~-~~~~~v~~~~~~~~~~~l~~~~~----dg 287 (337)
T 1gxr_A 223 --FTSQIFSLGYCPTGEWLAVGM-------ESSNVEVLHVNKPDKYQ-LH-LHESCVLSLKFAYCGKWFVSTGK----DN 287 (337)
T ss_dssp --CSSCEEEEEECTTSSEEEEEE-------TTSCEEEEETTSSCEEE-EC-CCSSCEEEEEECTTSSEEEEEET----TS
T ss_pred --CCCceEEEEECCCCCEEEEEc-------CCCcEEEEECCCCCeEE-Ec-CCccceeEEEECCCCCEEEEecC----CC
Confidence 345699999999999999999 89999999999988654 32 46788999999999999999887 56
Q ss_pred eEEEec------------------ccCCCCCcEEEEecCCcceecccc
Q 048012 467 THILYD------------------PRLSERGALVCVARAPRKKSVDDF 496 (616)
Q Consensus 467 ~~~v~~------------------~~~s~~g~~l~s~~~d~~~~~wd~ 496 (616)
.+.+|+ +.|+|+|.+|++++.|+.+++|++
T Consensus 288 ~i~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~ 335 (337)
T 1gxr_A 288 LLNAWRTPYGASIFQSKESSSVLSCDISVDDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp EEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred cEEEEECCCCeEEEEecCCCcEEEEEECCCCCEEEEecCCCeEEEEEE
Confidence 677776 558899999999999999999986
No 34
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=3.3e-36 Score=315.85 Aligned_cols=281 Identities=16% Similarity=0.216 Sum_probs=223.3
Q ss_pred cEEEEEECCCCCEEEEEEcCCcEEEEeCCCCccccccceecCCCCCCceEEEEecCCCCeEEEEeCCCeEEEEECCCCee
Q 048012 151 IVSALAVDHSGSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSDRFLCVTGSAQAKIYDRDGLTL 230 (616)
Q Consensus 151 ~V~~v~~sp~g~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~s~d~~v~vwd~~~~~~ 230 (616)
.+++++|+|+|++|++|+.|+.|++||+.+.... .....+ ..+....|++++++|++++.++.|+|||+.....
T Consensus 58 ~~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~-----~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 131 (420)
T 3vl1_A 58 AGKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGS-----KMLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQ 131 (420)
T ss_dssp CCTTCEEEEEETTEEEEEETTEEEEEECCSEETT-----TTSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSCEE
T ss_pred cccceeeeecCCeEEEEEcCCcEEEEEeccccee-----eEEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCcce
Confidence 3458899999999999999999999998764211 111112 3355557899999999999999999999987654
Q ss_pred eeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEEEECCCccccceEEeeeccCCCCccEEEEEECCC
Q 048012 231 GEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWDCD 310 (616)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~ 310 (616)
...+.+|...|++++|+|++ .+|++++.|++|++||+.+++....+. .|...|.+++|+|+
T Consensus 132 ------------~~~~~~h~~~v~~~~~~~~~-~~l~s~s~d~~i~iwd~~~~~~~~~~~------~h~~~v~~~~~~~~ 192 (420)
T 3vl1_A 132 ------------REIDQAHVSEITKLKFFPSG-EALISSSQDMQLKIWSVKDGSNPRTLI------GHRATVTDIAIIDR 192 (420)
T ss_dssp ------------EEETTSSSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTCCCCEEEE------CCSSCEEEEEEETT
T ss_pred ------------eeecccccCccEEEEECCCC-CEEEEEeCCCeEEEEeCCCCcCceEEc------CCCCcEEEEEEcCC
Confidence 23357899999999999987 599999999999999999876654442 45568999999999
Q ss_pred CCeEEEEeCCCcEEEEeCCCCCCCCCceeeecC---CC---------------------CCeEEEEEcCCCCeEEEEecC
Q 048012 311 GKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKG---HS---------------------DDITALKFSSDGRILLSRSFD 366 (616)
Q Consensus 311 g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~---h~---------------------~~V~~l~~spdg~~l~s~s~D 366 (616)
+++|++++.||.|++||++++ ..+..+.. |. ..|.+++|+|++++|++++.|
T Consensus 193 ~~~l~s~~~d~~v~iwd~~~~----~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d 268 (420)
T 3vl1_A 193 GRNVLSASLDGTIRLWECGTG----TTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVS 268 (420)
T ss_dssp TTEEEEEETTSCEEEEETTTT----EEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETT
T ss_pred CCEEEEEcCCCcEEEeECCCC----ceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCC
Confidence 999999999999999999876 44444443 33 444555568899999999999
Q ss_pred CcEEEEeCCCCCCcceEecCCCCCCcceeEEECCCCC-EEEEeeccccccCCCceEEEEeCCCCce-EEEEecCCCCCeE
Q 048012 367 GSLKVWDLRKMKEPLKVFEDLPNNYAQTNVAFSPDEQ-LFLTGTSVERESTTGGLLCFYDREKLEL-VSRVGISPACSVV 444 (616)
Q Consensus 367 g~v~lwd~~~~~~~~~~~~~~~~~~~v~~v~fspdg~-~l~~gs~~~~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~~v~ 444 (616)
|.|++||+++......... .+...|++++|+|+++ +|++|+ .||.|++||+.+++. +..+...+...|.
T Consensus 269 g~i~i~d~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~~g~-------~dg~i~vwd~~~~~~~~~~~~~~~~~~v~ 339 (420)
T 3vl1_A 269 GVITVHNVFSKEQTIQLPS--KFTCSCNSLTVDGNNANYIYAGY-------ENGMLAQWDLRSPECPVGEFLINEGTPIN 339 (420)
T ss_dssp SCEEEEETTTCCEEEEECC--TTSSCEEEEEECSSCTTEEEEEE-------TTSEEEEEETTCTTSCSEEEEESTTSCEE
T ss_pred CeEEEEECCCCceeEEccc--ccCCCceeEEEeCCCCCEEEEEe-------CCCeEEEEEcCCCcCchhhhhccCCCCce
Confidence 9999999997654443332 3445699999999999 999999 899999999999854 6777665667788
Q ss_pred EEEEcCCCCcEEEEeccCCCCceEEEeccc
Q 048012 445 QCAWHPKLNQIFATAGDKSQGGTHILYDPR 474 (616)
Q Consensus 445 ~~~~~p~~~~l~~~~~d~~~~~~~~v~~~~ 474 (616)
.+.|+ ++..|++++. ++.+++|++.
T Consensus 340 ~~~~~-~~~~l~s~~~----d~~v~iw~~~ 364 (420)
T 3vl1_A 340 NVYFA-AGALFVSSGF----DTSIKLDIIS 364 (420)
T ss_dssp EEEEE-TTEEEEEETT----TEEEEEEEEC
T ss_pred EEEeC-CCCEEEEecC----CccEEEEecc
Confidence 88665 6677777776 7889999854
No 35
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=2.5e-35 Score=305.52 Aligned_cols=299 Identities=14% Similarity=0.174 Sum_probs=230.8
Q ss_pred CcceEEecCCcccEEEEEECCCC-CEEEEEEcCCcEEEEeCCCCccccccceecCCCCCCceEEEEecC-CCCeEEEEeC
Q 048012 139 MSNEIVLKGHTKIVSALAVDHSG-SRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSP-TSDRFLCVTG 216 (616)
Q Consensus 139 ~~~~~~l~~H~~~V~~v~~sp~g-~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp-~g~~l~~~s~ 216 (616)
......+.+|...|++++|+|++ ++|++|+.||.|+|||+.+.... .......|...|.+++|+| ++.+|++++.
T Consensus 63 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~---~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~ 139 (383)
T 3ei3_B 63 YKLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKT---SFIQGMGPGDAITGMKFNQFNTNQLFVSSI 139 (383)
T ss_dssp CEEEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCE---EEECCCSTTCBEEEEEEETTEEEEEEEEET
T ss_pred cceEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccc---eeeecCCcCCceeEEEeCCCCCCEEEEEeC
Confidence 34455789999999999999999 99999999999999999864321 1111135778899999999 7899999999
Q ss_pred CCeEEEEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEEEECCCccccceEEeeeccC
Q 048012 217 SAQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLAR 296 (616)
Q Consensus 217 d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~ 296 (616)
|+.|++||+.+..+.. +....+|...|.+++|+|++ .+|++++.|+.|++||+. ++....+ .
T Consensus 140 d~~i~iwd~~~~~~~~----------~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~i~d~~-~~~~~~~------~ 201 (383)
T 3ei3_B 140 RGATTLRDFSGSVIQV----------FAKTDSWDYWYCCVDVSVSR-QMLATGDSTGRLLLLGLD-GHEIFKE------K 201 (383)
T ss_dssp TTEEEEEETTSCEEEE----------EECCCCSSCCEEEEEEETTT-TEEEEEETTSEEEEEETT-SCEEEEE------E
T ss_pred CCEEEEEECCCCceEE----------EeccCCCCCCeEEEEECCCC-CEEEEECCCCCEEEEECC-CCEEEEe------c
Confidence 9999999999755432 22345667889999999987 599999999999999994 3332222 2
Q ss_pred CCCccEEEEEECCCCC-eEEEEeCCCcEEEEeCCCCCCCCCceeeecCCCCCeEEEEEcC-CCCeEEEEecCCcEEEEeC
Q 048012 297 PGRVAVTTCAWDCDGK-CIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHSDDITALKFSS-DGRILLSRSFDGSLKVWDL 374 (616)
Q Consensus 297 ~~~~~v~~~~~sp~g~-~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp-dg~~l~s~s~Dg~v~lwd~ 374 (616)
.|...|.+++|+|+++ +|++|+.||.|++||+++.......+..+ +|...|++++|+| ++++|++++.|+.|+|||+
T Consensus 202 ~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~ 280 (383)
T 3ei3_B 202 LHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSS 280 (383)
T ss_dssp CSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEESSSEEEEEET
T ss_pred cCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEEC
Confidence 4555899999999999 99999999999999998743222444444 7999999999999 9999999999999999999
Q ss_pred CCCCCcceEecCCC-----CCC----------cceeEEECCCCCEEEEeeccccccCCCceEEEEeCCCCceEEEEecCC
Q 048012 375 RKMKEPLKVFEDLP-----NNY----------AQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREKLELVSRVGISP 439 (616)
Q Consensus 375 ~~~~~~~~~~~~~~-----~~~----------~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~ 439 (616)
++...... +..+. +.. .+..++|+|++++ +++ .||.|+|||+.+++++..+...+
T Consensus 281 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s-------~d~~i~iwd~~~~~~~~~l~~~~ 350 (383)
T 3ei3_B 281 YDWSKPDQ-IIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLN-------DKRTIDIYDANSGGLVHQLRDPN 350 (383)
T ss_dssp TBTTSCSE-EEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTT-------CCCCEEEEETTTCCEEEEECBTT
T ss_pred CCCccccc-cccccccccccccceEEeccCCCCceEEEecCCccc--ccC-------CCCeEEEEecCCCceeeeecCCC
Confidence 97655333 32221 112 2333555555555 444 79999999999999999987543
Q ss_pred -CCCeEEEEEcCCCCcEEEEeccCCCCceEEEeccc
Q 048012 440 -ACSVVQCAWHPKLNQIFATAGDKSQGGTHILYDPR 474 (616)
Q Consensus 440 -~~~v~~~~~~p~~~~l~~~~~d~~~~~~~~v~~~~ 474 (616)
...+..++|+|++..|++++ ++.+.||++.
T Consensus 351 ~~~~~~~~~~s~~g~~l~s~s-----d~~i~iw~~~ 381 (383)
T 3ei3_B 351 AAGIISLNKFSPTGDVLASGM-----GFNILIWNRE 381 (383)
T ss_dssp BCSCCCEEEECTTSSEEEEEE-----TTEEEEEECC
T ss_pred CCceEEEEEEecCccEEEEec-----CCcEEEEecC
Confidence 45566679999988887774 5678888875
No 36
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=1.1e-35 Score=298.16 Aligned_cols=246 Identities=16% Similarity=0.305 Sum_probs=209.4
Q ss_pred CCCCCceEEEEecCCCCeEEEEeCCCeEEEEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCC
Q 048012 193 PSEGHQVRNLSWSPTSDRFLCVTGSAQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSED 272 (616)
Q Consensus 193 ~~~~~~v~~l~~sp~g~~l~~~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~D 272 (616)
..|...|.+++|+|++.+|++++.|+.|+|||+.+... +..+..|...|.+++|+|++ ++|++|+.|
T Consensus 10 ~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~------------~~~~~~~~~~v~~~~~~~~~-~~l~s~s~d 76 (304)
T 2ynn_A 10 SNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVE------------VRSIQVTETPVRAGKFIARK-NWIIVGSDD 76 (304)
T ss_dssp EEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEE------------EEEEECCSSCEEEEEEEGGG-TEEEEEETT
T ss_pred cCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCce------------eEEeeccCCcEEEEEEeCCC-CEEEEECCC
Confidence 35677899999999999999999999999999987653 33356788999999999987 699999999
Q ss_pred CCEEEEECCCccccceEEeeeccCCCCccEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCCCCCceeeecCCCCCeEEEE
Q 048012 273 GSLRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWDCDGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHSDDITALK 352 (616)
Q Consensus 273 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~ 352 (616)
++|++||+.+++....+ .+|...|.+++|+|++++|++|+.||+|++||++++. .....+.+|...|.+++
T Consensus 77 ~~i~vwd~~~~~~~~~~------~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~---~~~~~~~~h~~~v~~v~ 147 (304)
T 2ynn_A 77 FRIRVFNYNTGEKVVDF------EAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNW---ALEQTFEGHEHFVMCVA 147 (304)
T ss_dssp SEEEEEETTTCCEEEEE------ECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTT---EEEEEECCCCSCEEEEE
T ss_pred CEEEEEECCCCcEEEEE------eCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCc---chhhhhcccCCcEEEEE
Confidence 99999999987655443 2456689999999999999999999999999998642 45567889999999999
Q ss_pred EcC-CCCeEEEEecCCcEEEEeCCCCCCcceEecCCCCCCcceeEEECC--CCCEEEEeeccccccCCCceEEEEeCCCC
Q 048012 353 FSS-DGRILLSRSFDGSLKVWDLRKMKEPLKVFEDLPNNYAQTNVAFSP--DEQLFLTGTSVERESTTGGLLCFYDREKL 429 (616)
Q Consensus 353 ~sp-dg~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~v~~v~fsp--dg~~l~~gs~~~~~~~~dg~i~iwd~~~~ 429 (616)
|+| ++.+|++++.|++|+|||++........... +...+..++|+| ++.+|++|+ .|+.|+|||+.++
T Consensus 148 ~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~l~s~s-------~D~~i~iWd~~~~ 218 (304)
T 2ynn_A 148 FNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTG--QERGVNYVDYYPLPDKPYMITAS-------DDLTIKIWDYQTK 218 (304)
T ss_dssp ECTTCTTEEEEEETTSEEEEEETTCSSCSEEEECC--CTTCEEEEEECCSTTCCEEEEEE-------TTSEEEEEETTTT
T ss_pred ECCCCCCEEEEEeCCCeEEEEECCCCCccceeccC--CcCcEEEEEEEEcCCCCEEEEEc-------CCCeEEEEeCCCC
Confidence 999 6789999999999999999875544443333 334588889986 788999999 8999999999999
Q ss_pred ceEEEEecCCCCCeEEEEEcCCCCcEEEEeccCCCCceEEEeccc
Q 048012 430 ELVSRVGISPACSVVQCAWHPKLNQIFATAGDKSQGGTHILYDPR 474 (616)
Q Consensus 430 ~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~~~~~~~v~~~~ 474 (616)
+++..+.. |...|..++|+|+++.|++++. ++.+++|++.
T Consensus 219 ~~~~~~~~-h~~~v~~~~~~p~~~~l~s~s~----Dg~i~iWd~~ 258 (304)
T 2ynn_A 219 SCVATLEG-HMSNVSFAVFHPTLPIIISGSE----DGTLKIWNSS 258 (304)
T ss_dssp EEEEEEEC-CSSCEEEEEECSSSSEEEEEET----TSCEEEEETT
T ss_pred ccceeeCC-CCCCEEEEEECCCCCEEEEEcC----CCeEEEEECC
Confidence 99999875 7788999999999999999987 6788888864
No 37
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=1.2e-35 Score=296.91 Aligned_cols=261 Identities=14% Similarity=0.280 Sum_probs=207.4
Q ss_pred EEecCCcccEEEEEECCCCCEEEEEEcCCcEEEEeCCCCccccccceecCCCCCCceEEEEecCC--CCeEEEEeCCCeE
Q 048012 143 IVLKGHTKIVSALAVDHSGSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPT--SDRFLCVTGSAQA 220 (616)
Q Consensus 143 ~~l~~H~~~V~~v~~sp~g~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~--g~~l~~~s~d~~v 220 (616)
..+.+|...|++++|+|+|++||+|+.|++|+||++..... ........|...|.+++|++. +++|++++.|++|
T Consensus 3 ~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~---~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v 79 (297)
T 2pm7_B 3 VIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETH---KLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKV 79 (297)
T ss_dssp EECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCB---CCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEE
T ss_pred eeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCc---EEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEE
Confidence 46789999999999999999999999999999999875321 112233467889999999864 8999999999999
Q ss_pred EEEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCC-CCEEEEEeCCCCEEEEECCCccccceEEeeeccCCCC
Q 048012 221 KIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKT-KETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPGR 299 (616)
Q Consensus 221 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~-~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~ 299 (616)
+|||+...... .+..+.+|...|.+++|+|+. ..+|++++.|++|++||+.......... ...|.
T Consensus 80 ~iWd~~~~~~~----------~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~----~~~h~ 145 (297)
T 2pm7_B 80 MIWKEENGRWS----------QIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPII----IDAHA 145 (297)
T ss_dssp EEEEBSSSCBC----------CCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEE----EECCS
T ss_pred EEEEcCCCceE----------EEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeee----eeccc
Confidence 99999865321 123356799999999999972 3699999999999999998653221111 12455
Q ss_pred ccEEEEEECCC-------------CCeEEEEeCCCcEEEEeCCCCCCCCCceeeecCCCCCeEEEEEcCCC---CeEEEE
Q 048012 300 VAVTTCAWDCD-------------GKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHSDDITALKFSSDG---RILLSR 363 (616)
Q Consensus 300 ~~v~~~~~sp~-------------g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~spdg---~~l~s~ 363 (616)
..|.+++|+|+ +++|++|+.||+|+|||++.+.........+.+|...|.+|+|+|++ ++|+++
T Consensus 146 ~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~ 225 (297)
T 2pm7_B 146 IGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASV 225 (297)
T ss_dssp SCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEE
T ss_pred CccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEE
Confidence 68999999997 57999999999999999986521122456788999999999999984 899999
Q ss_pred ecCCcEEEEeCCCCCCc--ceEecCCCCCCcceeEEECCCCCEEEEeeccccccCCCceEEEEeCC
Q 048012 364 SFDGSLKVWDLRKMKEP--LKVFEDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDRE 427 (616)
Q Consensus 364 s~Dg~v~lwd~~~~~~~--~~~~~~~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~ 427 (616)
+.|++|+|||++..... ...+....+...|.+++|+|++++|++++ .||.|+||+..
T Consensus 226 s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~-------~D~~v~lw~~~ 284 (297)
T 2pm7_B 226 SQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSG-------GDNKVTLWKEN 284 (297)
T ss_dssp ETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEE-------TTSCEEEEEEC
T ss_pred ECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEc-------CCCcEEEEEEC
Confidence 99999999999864322 12332233456699999999999999999 89999999976
No 38
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=1.4e-36 Score=314.70 Aligned_cols=277 Identities=18% Similarity=0.339 Sum_probs=228.0
Q ss_pred CCCCCceEEEEecCCCCeEEEEeCCCeEEEEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCC
Q 048012 193 PSEGHQVRNLSWSPTSDRFLCVTGSAQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSED 272 (616)
Q Consensus 193 ~~~~~~v~~l~~sp~g~~l~~~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~D 272 (616)
..|...|++++|+|++++|++++.|++|+|||+..... ...+..|...|.+++|+|++ .+|++|+.|
T Consensus 63 ~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~------------~~~~~~h~~~v~~~~~s~~g-~~las~~~d 129 (380)
T 3iz6_a 63 QGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQK------------THAIKLHCPWVMECAFAPNG-QSVACGGLD 129 (380)
T ss_dssp CCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEE------------EEEEECCCTTCCCCEECTTS-SEEEECCSS
T ss_pred cccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcc------------ceEEecCCCCEEEEEECCCC-CEEEEeeCC
Confidence 46788899999999999999999999999999987654 23356889999999999987 599999999
Q ss_pred CCEEEEECCCccccc-eEEeeeccCCCCccEEEEEECCC-CCeEEEEeCCCcEEEEeCCCCCCCCCceeee-----cCCC
Q 048012 273 GSLRIWDVNEFKSQK-QVIKPKLARPGRVAVTTCAWDCD-GKCIAGGIGDGSIQVWNLKPGWGSRPDIHVE-----KGHS 345 (616)
Q Consensus 273 g~v~iwd~~~~~~~~-~~~~~~~~~~~~~~v~~~~~sp~-g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~-----~~h~ 345 (616)
+.|++||+....... .........+|...|.++.|+|+ +..|++|+.|++|++||++++ ..+..+ .+|.
T Consensus 130 ~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~----~~~~~~~~~~~~~h~ 205 (380)
T 3iz6_a 130 SACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTG----QRISIFGSEFPSGHT 205 (380)
T ss_dssp SCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTC----CEEEEECCCSSSSCC
T ss_pred CcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCC----cEEEEeecccCCCCc
Confidence 999999997532111 00011122466678999999996 457999999999999999986 344443 6799
Q ss_pred CCeEEEEEcC-CCCeEEEEecCCcEEEEeCCCCCCcceEecCCCCCCcceeEEECCCCCEEEEeeccccccCCCceEEEE
Q 048012 346 DDITALKFSS-DGRILLSRSFDGSLKVWDLRKMKEPLKVFEDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFY 424 (616)
Q Consensus 346 ~~V~~l~~sp-dg~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iw 424 (616)
..|.+++|++ ++++|++|+.|++|+|||++.....+..+..| ...|.+++|+|++++|++|+ .||.|+||
T Consensus 206 ~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h--~~~v~~v~~~p~~~~l~s~s-------~D~~i~lw 276 (380)
T 3iz6_a 206 ADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGH--EGDINSVKFFPDGQRFGTGS-------DDGTCRLF 276 (380)
T ss_dssp SCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCC--SSCCCEEEECTTSSEEEEEC-------SSSCEEEE
T ss_pred cCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCc--CCCeEEEEEecCCCeEEEEc-------CCCeEEEE
Confidence 9999999987 88999999999999999998666667777654 45699999999999999999 89999999
Q ss_pred eCCCCceEEEEecCCC------CCeEEEEEcCCCCcEEEEeccCCCCceEEEec-----------------------ccC
Q 048012 425 DREKLELVSRVGISPA------CSVVQCAWHPKLNQIFATAGDKSQGGTHILYD-----------------------PRL 475 (616)
Q Consensus 425 d~~~~~~~~~~~~~~~------~~v~~~~~~p~~~~l~~~~~d~~~~~~~~v~~-----------------------~~~ 475 (616)
|+.+++.+..+..... ..|.+++|+|++..|++++.| +.+.+|+ ++|
T Consensus 277 d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d----g~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~ 352 (380)
T 3iz6_a 277 DMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSN----GDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGL 352 (380)
T ss_dssp ETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTT----SCEEEEETTTCCEEEEECCSCSSCCCCCCEEEE
T ss_pred ECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECC----CCEEEEECCCCceEEEEecccCCCCCceEEEEE
Confidence 9999999888754322 248999999999999999874 4555554 568
Q ss_pred CCCCcEEEEecCCcceecccccCC
Q 048012 476 SERGALVCVARAPRKKSVDDFEVA 499 (616)
Q Consensus 476 s~~g~~l~s~~~d~~~~~wd~~~~ 499 (616)
+|+|.+|++++.|+.+++|++...
T Consensus 353 s~dg~~l~sgs~D~~i~iW~~~~~ 376 (380)
T 3iz6_a 353 SSDGSALCTGSWDKNLKIWAFSGH 376 (380)
T ss_dssp CSSSSEEEEECTTSCEEEEECCSS
T ss_pred CCCCCEEEEeeCCCCEEEEecCCC
Confidence 999999999999999999998654
No 39
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=1.5e-35 Score=337.79 Aligned_cols=336 Identities=15% Similarity=0.219 Sum_probs=266.0
Q ss_pred cceEEecCCcccEEEEEECCCCCEEEEEEcCCcEEEEeCCCCccccccceecCCCCCCceEEEEecCCCCeEEEEeCCCe
Q 048012 140 SNEIVLKGHTKIVSALAVDHSGSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSDRFLCVTGSAQ 219 (616)
Q Consensus 140 ~~~~~l~~H~~~V~~v~~sp~g~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~s~d~~ 219 (616)
.....+.+|.+.|++++|+|+|.+||+|+.||.|+|||+.++. .......|...|.+++|+|++++|++++.++.
T Consensus 4 ~~~~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~-----~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~ 78 (814)
T 3mkq_A 4 DIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQV-----EVRSIQVTETPVRAGKFIARKNWIIVGSDDFR 78 (814)
T ss_dssp CCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTE-----EEEEEECCSSCEEEEEEEGGGTEEEEEETTSE
T ss_pred ccceeeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCc-----eEEEEecCCCcEEEEEEeCCCCEEEEEeCCCe
Confidence 3456789999999999999999999999999999999997643 11222357778999999999999999999999
Q ss_pred EEEEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEEEECCCccccceEEeeeccCCCC
Q 048012 220 AKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPGR 299 (616)
Q Consensus 220 v~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~ 299 (616)
|+|||+.+... +..+.+|...|++++|+|++ .+|++++.|++|++||+.+........ ..|.
T Consensus 79 i~vw~~~~~~~------------~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~vw~~~~~~~~~~~~-----~~~~ 140 (814)
T 3mkq_A 79 IRVFNYNTGEK------------VVDFEAHPDYIRSIAVHPTK-PYVLSGSDDLTVKLWNWENNWALEQTF-----EGHE 140 (814)
T ss_dssp EEEEETTTCCE------------EEEEECCSSCEEEEEECSSS-SEEEEEETTSEEEEEEGGGTSEEEEEE-----ECCS
T ss_pred EEEEECCCCcE------------EEEEecCCCCEEEEEEeCCC-CEEEEEcCCCEEEEEECCCCceEEEEE-----cCCC
Confidence 99999987653 23356799999999999987 589999999999999998653322222 2345
Q ss_pred ccEEEEEECC-CCCeEEEEeCCCcEEEEeCCCCCCCCCceeeecCCCCCeEEEEEcC--CCCeEEEEecCCcEEEEeCCC
Q 048012 300 VAVTTCAWDC-DGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHSDDITALKFSS--DGRILLSRSFDGSLKVWDLRK 376 (616)
Q Consensus 300 ~~v~~~~~sp-~g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp--dg~~l~s~s~Dg~v~lwd~~~ 376 (616)
..|.+++|+| ++++|++++.||.|++||+..+. ........|...|.+++|+| ++.+|++++.||.|++||+++
T Consensus 141 ~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~ 217 (814)
T 3mkq_A 141 HFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQST---PNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQT 217 (814)
T ss_dssp SCEEEEEEETTEEEEEEEEETTSEEEEEETTCSS---CSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTT
T ss_pred CcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc---ceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCC
Confidence 5899999999 89999999999999999998752 23333344558899999999 999999999999999999986
Q ss_pred CCCcceEecCCCCCCcceeEEECCCCCEEEEeeccccccCCCceEEEEeCCCCceEEEEecCCCCCeEEEEEcCCCCcE-
Q 048012 377 MKEPLKVFEDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREKLELVSRVGISPACSVVQCAWHPKLNQI- 455 (616)
Q Consensus 377 ~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l- 455 (616)
. ..+..+.. +...|++++|+|++++|++++ .||.|++||+.+++.+..+.. +...+.+++|+|++..+
T Consensus 218 ~-~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~-------~dg~v~vwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~ 286 (814)
T 3mkq_A 218 K-SCVATLEG--HMSNVSFAVFHPTLPIIISGS-------EDGTLKIWNSSTYKVEKTLNV-GLERSWCIATHPTGRKNY 286 (814)
T ss_dssp T-EEEEEEEC--CSSCEEEEEECSSSSEEEEEE-------TTSCEEEEETTTCSEEEEECC-SSSSEEEEEECTTCGGGE
T ss_pred C-cEEEEEcC--CCCCEEEEEEcCCCCEEEEEe-------CCCeEEEEECCCCcEEEEeec-CCCcEEEEEEccCCCceE
Confidence 4 34555554 345699999999999999999 899999999999999998875 56789999999998753
Q ss_pred EEEeccCC-----------------CCceE-----------------------------------------EEecccCCC
Q 048012 456 FATAGDKS-----------------QGGTH-----------------------------------------ILYDPRLSE 477 (616)
Q Consensus 456 ~~~~~d~~-----------------~~~~~-----------------------------------------~v~~~~~s~ 477 (616)
++++.+.. .+..+ .+..++|+|
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp 366 (814)
T 3mkq_A 287 IASGFDNGFTVLSLGNDEPTLSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGSVDVFPQSLAHSP 366 (814)
T ss_dssp EEEEETTEEEEEECSCCSCCEEECSSSEEEEECCTTSCTTCEEEEECCSCCCCCSSSCBCCCCEEECCCSSCCSEEEECT
T ss_pred EEEEeCCCEEEEEcCCCCceeEECCCCCEEEECcccccceeeeeeecccccccccCccceeeeecCCCCccCCceeEECC
Confidence 44443310 00000 123467889
Q ss_pred CCcEEEEecCCcceecccccC---------CceeeCCCCCCcccC
Q 048012 478 RGALVCVARAPRKKSVDDFEV---------APVIHNPHALPLFRD 513 (616)
Q Consensus 478 ~g~~l~s~~~d~~~~~wd~~~---------~~~~~~p~~~~l~~~ 513 (616)
+|++|++++ ++.+.+|++.. ..+.|+|++..+...
T Consensus 367 dg~~la~~~-~~~~~i~~~~~~~~~~~~~i~~~~~spdg~~la~~ 410 (814)
T 3mkq_A 367 NGRFVTVVG-DGEYVIYTALAWRNKAFGKCQDFVWGPDSNSYALI 410 (814)
T ss_dssp TSSEEEEEE-TTEEEEEETTTTEEEEEEECSEEEECTTSSCEEEE
T ss_pred CCCEEEEec-CCEEEEEECccccccCCCceEEEEEeCCCCeEEEE
Confidence 999999887 88899998743 237788887666544
No 40
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.3e-36 Score=315.71 Aligned_cols=334 Identities=14% Similarity=0.180 Sum_probs=247.0
Q ss_pred eEEe-cCCcccEEEEEECC-CCCEEEEEEcCCcEEEEeCCCCccccccce-ecCCCCCCceEEEEecCCCCeEEEEeCCC
Q 048012 142 EIVL-KGHTKIVSALAVDH-SGSRVLSGSYDYTVRMYDFQGMNSRLQSFR-QLEPSEGHQVRNLSWSPTSDRFLCVTGSA 218 (616)
Q Consensus 142 ~~~l-~~H~~~V~~v~~sp-~g~~lasgs~Dg~i~iwd~~~~~~~~~~~~-~~~~~~~~~v~~l~~sp~g~~l~~~s~d~ 218 (616)
...+ .+|.+.|++|+|+| ++.+||+|+.||+|+|||+....... .+. .....|...|.+++|+|++.+|++++.|+
T Consensus 55 ~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~-~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg 133 (437)
T 3gre_A 55 IATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGE-VYSSSLTYDCSSTVTQITMIPNFDAFAVSSKDG 133 (437)
T ss_dssp EEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTC-CCSCSEEEECSSCEEEEEECTTSSEEEEEETTS
T ss_pred EeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCc-ccceeeeccCCCCEEEEEEeCCCCEEEEEeCCC
Confidence 4456 89999999999999 99999999999999999986521110 111 11113678899999999999999999999
Q ss_pred eEEEEECC---CCeeeeEeeCceeEeecccC-CCcccceEEEE--EcCCCCCEEEEEeCCCCEEEEECCCccccceEEee
Q 048012 219 QAKIYDRD---GLTLGEFVKGDMYIRDLKNT-KGHICGLTCGE--WHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKP 292 (616)
Q Consensus 219 ~v~vwd~~---~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~--~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~ 292 (616)
.|+|||+. .........+. .++.+... .++...+.++. +++++ .+|++++.|++|++||+.+.+....+...
T Consensus 134 ~i~vwd~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~ 211 (437)
T 3gre_A 134 QIIVLKVNHYQQESEVKFLNCE-CIRKINLKNFGKNEYAVRMRAFVNEEK-SLLVALTNLSRVIIFDIRTLERLQIIENS 211 (437)
T ss_dssp EEEEEEEEEEEETTEEEEEEEE-EEEEEEGGGGSSCCCEEEEEEEECSSC-EEEEEEETTSEEEEEETTTCCEEEEEECC
T ss_pred EEEEEEeccccCCceeeccccc-eeEEEEccCcccccCceEEEEEEcCCC-CEEEEEeCCCeEEEEeCCCCeeeEEEccC
Confidence 99999984 22222222211 11222111 11566777777 55766 69999999999999999887665544321
Q ss_pred eccCCCCccEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCCCCCceeeec-CCCCCeEEEEEcC----CCCeEEEEecCC
Q 048012 293 KLARPGRVAVTTCAWDCDGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEK-GHSDDITALKFSS----DGRILLSRSFDG 367 (616)
Q Consensus 293 ~~~~~~~~~v~~~~~sp~g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~-~h~~~V~~l~~sp----dg~~l~s~s~Dg 367 (616)
.|...|++++|+|++++|++|+.||.|++||++.+ ..+..+. .|...|++++|+| ++.+|++++.||
T Consensus 212 ----~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~----~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg 283 (437)
T 3gre_A 212 ----PRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFN----VLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKT 283 (437)
T ss_dssp ----GGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTT----EEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTE
T ss_pred ----CCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCc----cEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCC
Confidence 14448999999999999999999999999999975 4555554 7888999996654 688999999999
Q ss_pred cEEEEeCCCCCCcceEecCC------------------------CCCCcceeEEECCCCCEEEEeeccccccCCCceEEE
Q 048012 368 SLKVWDLRKMKEPLKVFEDL------------------------PNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCF 423 (616)
Q Consensus 368 ~v~lwd~~~~~~~~~~~~~~------------------------~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~i 423 (616)
+|+|||++++. .+..+..+ .+...|++++|+ ++++|++|+ .||.|++
T Consensus 284 ~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~-------~d~~i~~ 354 (437)
T 3gre_A 284 FLTIWNFVKGH-CQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDE-------ATSSIVM 354 (437)
T ss_dssp EEEEEETTTTE-EEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEG-------GGTEEEE
T ss_pred cEEEEEcCCCc-EEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecC-------CCCeEEE
Confidence 99999998654 33333322 145568999999 889999999 8999999
Q ss_pred EeCCCCceEEEEecC--CCCCeEEEEEcCCCCcEEEEec--cC-----CCCceEEEecccCCCC--CcEEEEecCCccee
Q 048012 424 YDREKLELVSRVGIS--PACSVVQCAWHPKLNQIFATAG--DK-----SQGGTHILYDPRLSER--GALVCVARAPRKKS 492 (616)
Q Consensus 424 wd~~~~~~~~~~~~~--~~~~v~~~~~~p~~~~l~~~~~--d~-----~~~~~~~v~~~~~s~~--g~~l~s~~~d~~~~ 492 (616)
||+.+++++..+... ....+..+.+++....++.... .. ...|...|..++++++ +.+|++++.|+.|+
T Consensus 355 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~ 434 (437)
T 3gre_A 355 FSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVACDNSGLIG 434 (437)
T ss_dssp EETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEESSSSEEEEEEETTSCEE
T ss_pred EECCCcccceEEecccccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeeccCCceEEEEEcCCceEE
Confidence 999999998888642 2345667777777665554400 00 1135566777888877 88999999999999
Q ss_pred ccc
Q 048012 493 VDD 495 (616)
Q Consensus 493 ~wd 495 (616)
||+
T Consensus 435 iw~ 437 (437)
T 3gre_A 435 IFQ 437 (437)
T ss_dssp EEC
T ss_pred EeC
Confidence 995
No 41
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=3.5e-35 Score=301.02 Aligned_cols=272 Identities=18% Similarity=0.278 Sum_probs=223.5
Q ss_pred CCCCCceEEEEecCCCCeEEEEeCCCeEEEEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCC
Q 048012 193 PSEGHQVRNLSWSPTSDRFLCVTGSAQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSED 272 (616)
Q Consensus 193 ~~~~~~v~~l~~sp~g~~l~~~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~D 272 (616)
..|...|.+++|+|++.+|++++.|+.|+|||....... ..+..|...|.+++|+|++ .+|++++.|
T Consensus 61 ~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~------------~~~~~~~~~v~~~~~sp~g-~~lasg~~d 127 (354)
T 2pbi_B 61 KGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKE------------HAVTMPCTWVMACAYAPSG-CAIACGGLD 127 (354)
T ss_dssp ECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEE------------EEEECSSSCCCEEEECTTS-SEEEEESTT
T ss_pred cCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcc------------eEEecCCCCEEEEEECCCC-CEEEEeeCC
Confidence 357788999999999999999999999999998765432 2235677889999999987 599999999
Q ss_pred CCEEEEECCCccccceEEeeeccCCCCccEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCCCCCceeeecCCCCCeEEEE
Q 048012 273 GSLRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWDCDGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHSDDITALK 352 (616)
Q Consensus 273 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~ 352 (616)
+.|++|++.................|...|.+++|++++..|++++.||+|++||++++ ..+..+.+|...|.+++
T Consensus 128 ~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~----~~~~~~~~h~~~v~~~~ 203 (354)
T 2pbi_B 128 NKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESG----QLLQSFHGHGADVLCLD 203 (354)
T ss_dssp SEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTC----CEEEEEECCSSCEEEEE
T ss_pred CCEEEEEEeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCC----eEEEEEcCCCCCeEEEE
Confidence 99999998643211100000011235558999999999999999999999999999976 67888899999999999
Q ss_pred EcC--CCCeEEEEecCCcEEEEeCCCCCCcceEecCCCCCCcceeEEECCCCCEEEEeeccccccCCCceEEEEeCCCCc
Q 048012 353 FSS--DGRILLSRSFDGSLKVWDLRKMKEPLKVFEDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREKLE 430 (616)
Q Consensus 353 ~sp--dg~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~~~ 430 (616)
|+| ++++|++++.||+|++||++++ .++..+.. +...|++++|+|++.+|++|+ .|+.|+|||+.+.+
T Consensus 204 ~~~~~~g~~l~sgs~Dg~v~~wd~~~~-~~~~~~~~--h~~~v~~v~~~p~~~~l~s~s-------~D~~v~lwd~~~~~ 273 (354)
T 2pbi_B 204 LAPSETGNTFVSGGCDKKAMVWDMRSG-QCVQAFET--HESDVNSVRYYPSGDAFASGS-------DDATCRLYDLRADR 273 (354)
T ss_dssp ECCCSSCCEEEEEETTSCEEEEETTTC-CEEEEECC--CSSCEEEEEECTTSSEEEEEE-------TTSCEEEEETTTTE
T ss_pred EEeCCCCCEEEEEeCCCeEEEEECCCC-cEEEEecC--CCCCeEEEEEeCCCCEEEEEe-------CCCeEEEEECCCCc
Confidence 988 5789999999999999999975 44556655 445699999999999999999 89999999999988
Q ss_pred eEEEEecC-CCCCeEEEEEcCCCCcEEEEeccCCCCceEEEec-------------------ccCCCCCcEEEEecCCcc
Q 048012 431 LVSRVGIS-PACSVVQCAWHPKLNQIFATAGDKSQGGTHILYD-------------------PRLSERGALVCVARAPRK 490 (616)
Q Consensus 431 ~~~~~~~~-~~~~v~~~~~~p~~~~l~~~~~d~~~~~~~~v~~-------------------~~~s~~g~~l~s~~~d~~ 490 (616)
.+..+... +...+.+++|+|++..|++++.| +.+++|+ ++|+|+|.+|++++.|+.
T Consensus 274 ~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d----~~i~vwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~sgs~D~~ 349 (354)
T 2pbi_B 274 EVAIYSKESIIFGASSVDFSLSGRLLFAGYND----YTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHT 349 (354)
T ss_dssp EEEEECCTTCCSCEEEEEECTTSSEEEEEETT----SCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSCEEEEETTSE
T ss_pred EEEEEcCCCcccceeEEEEeCCCCEEEEEECC----CcEEEEECCCCceEEEEECCCCcEEEEEECCCCCEEEEEcCCCC
Confidence 87766432 22468999999999999999874 4555554 678999999999999999
Q ss_pred eeccc
Q 048012 491 KSVDD 495 (616)
Q Consensus 491 ~~~wd 495 (616)
+++|+
T Consensus 350 v~vW~ 354 (354)
T 2pbi_B 350 LRVWA 354 (354)
T ss_dssp EEEEC
T ss_pred EEecC
Confidence 99996
No 42
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=5e-35 Score=304.32 Aligned_cols=290 Identities=13% Similarity=0.116 Sum_probs=226.0
Q ss_pred ceEEecCCcccEEEEEECCCCCEEEEEEcCCcEEEEeCCCCcccc-ccceecCCCCCCceEEEEecCC----C---CeEE
Q 048012 141 NEIVLKGHTKIVSALAVDHSGSRVLSGSYDYTVRMYDFQGMNSRL-QSFRQLEPSEGHQVRNLSWSPT----S---DRFL 212 (616)
Q Consensus 141 ~~~~l~~H~~~V~~v~~sp~g~~lasgs~Dg~i~iwd~~~~~~~~-~~~~~~~~~~~~~v~~l~~sp~----g---~~l~ 212 (616)
....+.+|...|++|+|+| ++|++|+.||.|+||++....... .........|...|.+++|+++ + .+|+
T Consensus 8 ~~~~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~ 85 (397)
T 1sq9_A 8 TANAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVA 85 (397)
T ss_dssp EEEESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEE
T ss_pred hhhhhhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEE
Confidence 3457889999999999998 799999999999999998754100 0112222357778999999999 9 9999
Q ss_pred EEeCCCeEEEEECCCCeeeeEeeCceeEeecccCCCc-----ccceEEEEEc----CCCCCE-EEEEeCCCCEEEEECCC
Q 048012 213 CVTGSAQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGH-----ICGLTCGEWH----PKTKET-ILTSSEDGSLRIWDVNE 282 (616)
Q Consensus 213 ~~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~h-----~~~v~~~~~~----p~~~~~-l~s~s~Dg~v~iwd~~~ 282 (616)
+++.++.|++|++....... . ..+..+..| ...|.+++|+ |++ .+ |++++.|+.|++||+.+
T Consensus 86 s~~~dg~i~iw~~~~~~~~~----~---~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~l~~~~~dg~i~iwd~~~ 157 (397)
T 1sq9_A 86 TTSFSGDLLFYRITREDETK----K---VIFEKLDLLDSDMKKHSFWALKWGASNDRLL-SHRLVATDVKGTTYIWKFHP 157 (397)
T ss_dssp EEETTSCEEEEEEEECTTTC----C---EEEEEECCSCTTGGGSCEEEEEEECCC-----CEEEEEEETTSCEEEEEEES
T ss_pred EEcCCCCEEEEEccCCcccc----c---ccceeecccccccCCCcEEEEEEeeccCCCC-ceEEEEEeCCCcEEEEeCCc
Confidence 99999999999987554200 0 002223455 6899999999 877 57 99999999999999987
Q ss_pred ------ccccc-----eEEee-eccCCCCccEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCCCCCceeeecC---C---
Q 048012 283 ------FKSQK-----QVIKP-KLARPGRVAVTTCAWDCDGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKG---H--- 344 (616)
Q Consensus 283 ------~~~~~-----~~~~~-~~~~~~~~~v~~~~~sp~g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~---h--- 344 (616)
..... .+... .....+...|.+++|+|++ +|++|+.||.|++||++++ ..+..+.. |
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~----~~~~~~~~~~~h~~~ 232 (397)
T 1sq9_A 158 FADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTL----RPLYNFESQHSMINN 232 (397)
T ss_dssp SSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTT----EEEEEEECCC---CC
T ss_pred cccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCC----ceeEEEecccccccc
Confidence 55444 32210 0012345579999999999 9999999999999999875 56777777 8
Q ss_pred CCCeEEEEEcCCCCeEEEEecC---CcEEEEeCCCCCCcceEecCCC-----------CCCcceeEEECCCCCEEEEeec
Q 048012 345 SDDITALKFSSDGRILLSRSFD---GSLKVWDLRKMKEPLKVFEDLP-----------NNYAQTNVAFSPDEQLFLTGTS 410 (616)
Q Consensus 345 ~~~V~~l~~spdg~~l~s~s~D---g~v~lwd~~~~~~~~~~~~~~~-----------~~~~v~~v~fspdg~~l~~gs~ 410 (616)
...|.+++|+|++++|++++.| +.|++||+++.. ++..+.... +...|.+++|+|++++|++++
T Consensus 233 ~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~- 310 (397)
T 1sq9_A 233 SNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGE-RIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAG- 310 (397)
T ss_dssp CCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCC-EEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEE-
T ss_pred CCccceEEECCCCCEEEEEecCCCCceEEEEECCCCc-ccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEe-
Confidence 9999999999999999999999 999999998753 455554411 456699999999999999999
Q ss_pred cccccCCCceEEEEeCCCCceEEEEec-----CC---------------CCCeEEEEEcCCCC
Q 048012 411 VERESTTGGLLCFYDREKLELVSRVGI-----SP---------------ACSVVQCAWHPKLN 453 (616)
Q Consensus 411 ~~~~~~~dg~i~iwd~~~~~~~~~~~~-----~~---------------~~~v~~~~~~p~~~ 453 (616)
.||.|+|||+.+++++..+.. .+ ...|.+++|+|++.
T Consensus 311 ------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~ 367 (397)
T 1sq9_A 311 ------WDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGW 367 (397)
T ss_dssp ------TTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTT
T ss_pred ------CCCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccc
Confidence 899999999999999998872 24 67788999998874
No 43
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=5.9e-35 Score=299.68 Aligned_cols=301 Identities=16% Similarity=0.270 Sum_probs=231.2
Q ss_pred EEecCCcccEEEEEECCC----CCEEEEEEcCCcEEEEeCCCCcccccccee-cCCCCCCceEEEEecCC----CCeEEE
Q 048012 143 IVLKGHTKIVSALAVDHS----GSRVLSGSYDYTVRMYDFQGMNSRLQSFRQ-LEPSEGHQVRNLSWSPT----SDRFLC 213 (616)
Q Consensus 143 ~~l~~H~~~V~~v~~sp~----g~~lasgs~Dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~v~~l~~sp~----g~~l~~ 213 (616)
..+.+|...|++|+|+|+ ..++++++.++.|+||++..... ...+.. ....+...|.+++|+|+ +.+|++
T Consensus 12 ~~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~ 90 (366)
T 3k26_A 12 SLKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGE-IRLLQSYVDADADENFYTCAWTYDSNTSHPLLAV 90 (366)
T ss_dssp EEECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGC-EEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEE
T ss_pred EeecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcE-EEeeeeccccCCCCcEEEEEeccCCCCCCCEEEE
Confidence 355699999999999984 45677777788999999986432 222222 22336678999999999 668999
Q ss_pred EeCCCeEEEEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEEEECCCccccceEEeee
Q 048012 214 VTGSAQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKPK 293 (616)
Q Consensus 214 ~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~ 293 (616)
++.|+.|+|||+..... +..+.+|...|.+++|+|++..+|++++.|++|++||+.+++....+.
T Consensus 91 ~~~dg~i~v~d~~~~~~------------~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~--- 155 (366)
T 3k26_A 91 AGSRGIIRIINPITMQC------------IKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFG--- 155 (366)
T ss_dssp EETTCEEEEECTTTCCE------------EEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEEC---
T ss_pred ecCCCEEEEEEchhceE------------eeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEec---
Confidence 99999999999987654 223568999999999999444799999999999999998765433321
Q ss_pred ccCCCCccEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCCC------------------------CCceeeecCCCCCeE
Q 048012 294 LARPGRVAVTTCAWDCDGKCIAGGIGDGSIQVWNLKPGWGS------------------------RPDIHVEKGHSDDIT 349 (616)
Q Consensus 294 ~~~~~~~~v~~~~~sp~g~~l~~g~~dg~I~iwd~~~~~~~------------------------~~~~~~~~~h~~~V~ 349 (616)
....+...|.+++|+|++++|++++.||.|++||++++... ........+|...|.
T Consensus 156 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 235 (366)
T 3k26_A 156 GVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVD 235 (366)
T ss_dssp STTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCC
T ss_pred ccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEE
Confidence 11346668999999999999999999999999999864100 011223334999999
Q ss_pred EEEEcCCCCeEEEEecCCcEEEEeCCCCCCc-------------ceEecCCCCCCcceeEEECCC--CCEEEEeeccccc
Q 048012 350 ALKFSSDGRILLSRSFDGSLKVWDLRKMKEP-------------LKVFEDLPNNYAQTNVAFSPD--EQLFLTGTSVERE 414 (616)
Q Consensus 350 ~l~~spdg~~l~s~s~Dg~v~lwd~~~~~~~-------------~~~~~~~~~~~~v~~v~fspd--g~~l~~gs~~~~~ 414 (616)
+++|+ +++|++++.|+.|++||+++.... +..+.. +...|++++|+|+ +++|++|+
T Consensus 236 ~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~s~~~~~~~l~~~~----- 306 (366)
T 3k26_A 236 CVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDY--SQCDIWYMRFSMDFWQKMLALGN----- 306 (366)
T ss_dssp EEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEEC--SSCCSSCCCCEECTTSSEEEEEC-----
T ss_pred EEEEc--CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccc--cCCcEEEEEEcCCCCCcEEEEEe-----
Confidence 99999 789999999999999999875431 233333 3455899999999 99999999
Q ss_pred cCCCceEEEEeCCCCceE----EEEecC-CCCCeEEEEEcCCCCcEEEEeccCCCCceEEEeccc
Q 048012 415 STTGGLLCFYDREKLELV----SRVGIS-PACSVVQCAWHPKLNQIFATAGDKSQGGTHILYDPR 474 (616)
Q Consensus 415 ~~~dg~i~iwd~~~~~~~----~~~~~~-~~~~v~~~~~~p~~~~l~~~~~d~~~~~~~~v~~~~ 474 (616)
.||.|+|||+.+++.+ ..+... +...|.+++|+|++++|++++. ++.+.+|++.
T Consensus 307 --~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~----dg~i~iwd~~ 365 (366)
T 3k26_A 307 --QVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCD----DASIWRWDRL 365 (366)
T ss_dssp --TTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEET----TSEEEEEEC-
T ss_pred --cCCcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCCCeEEEEeC----CCEEEEEEec
Confidence 8999999999988643 344432 1578899999998888888876 6678888763
No 44
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=1.3e-34 Score=306.30 Aligned_cols=276 Identities=16% Similarity=0.297 Sum_probs=205.4
Q ss_pred CCcccEEEEEECCCCCEEEEEEcCCcEEEEeCCCCcc-------ccccceecCCCCC------------CceEEEEecCC
Q 048012 147 GHTKIVSALAVDHSGSRVLSGSYDYTVRMYDFQGMNS-------RLQSFRQLEPSEG------------HQVRNLSWSPT 207 (616)
Q Consensus 147 ~H~~~V~~v~~sp~g~~lasgs~Dg~i~iwd~~~~~~-------~~~~~~~~~~~~~------------~~v~~l~~sp~ 207 (616)
.|.+.|++|+|+|+|++||+|+.||.|+||++..... ... .......|. ..|.+++|+|+
T Consensus 26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~-~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~ 104 (447)
T 3dw8_B 26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYN-VYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQ 104 (447)
T ss_dssp CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEE-EEEEEECCCCEEEGGGTEEECCCCCEEEECCC
T ss_pred cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCccccccee-EecccccccccccccccccccCceEEEEEcCC
Confidence 4688999999999999999999999999999986531 111 112222455 67999999999
Q ss_pred C--CeEEEEeCCCeEEEEECCCCeeeeE-------------------------eeCc--eeEeec-ccCCCcccceEEEE
Q 048012 208 S--DRFLCVTGSAQAKIYDRDGLTLGEF-------------------------VKGD--MYIRDL-KNTKGHICGLTCGE 257 (616)
Q Consensus 208 g--~~l~~~s~d~~v~vwd~~~~~~~~~-------------------------~~~~--~~~~~~-~~~~~h~~~v~~~~ 257 (616)
+ .+|++++.|+.|+||++........ .... ...... ....+|...|++++
T Consensus 105 ~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~ 184 (447)
T 3dw8_B 105 KNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSIS 184 (447)
T ss_dssp CSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEE
T ss_pred CCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEE
Confidence 8 7899999999999999875432100 0000 000001 11468999999999
Q ss_pred EcCCCCCEEEEEeCCCCEEEEECCCccccceEEe--eeccCCCCccEEEEEECCCC-CeEEEEeCCCcEEEEeCCCCCCC
Q 048012 258 WHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIK--PKLARPGRVAVTTCAWDCDG-KCIAGGIGDGSIQVWNLKPGWGS 334 (616)
Q Consensus 258 ~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~--~~~~~~~~~~v~~~~~sp~g-~~l~~g~~dg~I~iwd~~~~~~~ 334 (616)
|+|++ .+|++| .|++|+|||+........+.. ......|...|++++|+|++ ++|++|+.||.|++||++++...
T Consensus 185 ~~~~~-~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~ 262 (447)
T 3dw8_B 185 INSDY-ETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALC 262 (447)
T ss_dssp ECTTS-SEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSS
T ss_pred EcCCC-CEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccc
Confidence 99987 588888 799999999984332222211 11123566689999999998 99999999999999999986321
Q ss_pred CCceeeecCCCC------------CeEEEEEcCCCCeEEEEecCCcEEEEeCCCCCCcceEecCCCCCC-----------
Q 048012 335 RPDIHVEKGHSD------------DITALKFSSDGRILLSRSFDGSLKVWDLRKMKEPLKVFEDLPNNY----------- 391 (616)
Q Consensus 335 ~~~~~~~~~h~~------------~V~~l~~spdg~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~----------- 391 (616)
...+..+..|.. .|.+++|+|++++|++++. +.|+|||+++...++..+..+....
T Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 341 (447)
T 3dw8_B 263 DRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDC 341 (447)
T ss_dssp CTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSG
T ss_pred cceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeeccccccccccccccccc
Confidence 222667777776 8999999999999999998 9999999997556666666543211
Q ss_pred --cceeEEECCCCCEEEEeeccccccCCCceEEEEeCCCCceEE
Q 048012 392 --AQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREKLELVS 433 (616)
Q Consensus 392 --~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~~~~~~ 433 (616)
.+..++|+|++++|++|+ .||.|+|||+.+++.+.
T Consensus 342 i~~~~~~~~s~~~~~l~s~s-------~dg~v~iwd~~~~~~~~ 378 (447)
T 3dw8_B 342 IFDKFECCWNGSDSVVMTGS-------YNNFFRMFDRNTKRDIT 378 (447)
T ss_dssp GGCCCCEEECTTSSEEEEEC-------STTEEEEEETTTCCEEE
T ss_pred cccceEEEECCCCCEEEEec-------cCCEEEEEEcCCCccee
Confidence 133499999999999999 89999999999998764
No 45
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=1.9e-34 Score=343.90 Aligned_cols=331 Identities=15% Similarity=0.230 Sum_probs=273.1
Q ss_pred ceEEecCCcccEEEEEECCCCCEEEEEEcCCcEEEEeCCCCccccccceecCCCCCCceEEEEecCCCCeEEEEeCCCeE
Q 048012 141 NEIVLKGHTKIVSALAVDHSGSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSDRFLCVTGSAQA 220 (616)
Q Consensus 141 ~~~~l~~H~~~V~~v~~sp~g~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~s~d~~v 220 (616)
....+.+|.+.|++++|+|+|++||+|+.||+|+|||+.++.. . .....|...|.+++|+|++++|++++.|+.|
T Consensus 607 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~----~-~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v 681 (1249)
T 3sfz_A 607 SRLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEK----L-LDIKAHEDEVLCCAFSSDDSYIATCSADKKV 681 (1249)
T ss_dssp CSEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCE----E-EEECCCSSCEEEEEECTTSSEEEEEETTSEE
T ss_pred ceEEEecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCE----E-EEeccCCCCEEEEEEecCCCEEEEEeCCCeE
Confidence 3467889999999999999999999999999999999987531 1 2223677889999999999999999999999
Q ss_pred EEEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCC-CCEEEEEeCCCCEEEEECCCccccceEEeeeccCCCC
Q 048012 221 KIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKT-KETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPGR 299 (616)
Q Consensus 221 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~-~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~ 299 (616)
+|||+.+... +..+.+|...|.+++|+|++ ..++++|+.|++|++||+.++.....+ .+|.
T Consensus 682 ~vwd~~~~~~------------~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~------~~h~ 743 (1249)
T 3sfz_A 682 KIWDSATGKL------------VHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTM------FGHT 743 (1249)
T ss_dssp EEEETTTCCE------------EEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEE------CCCS
T ss_pred EEEECCCCce------------EEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhhee------cCCC
Confidence 9999987654 33356899999999999953 358999999999999999887654433 2566
Q ss_pred ccEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCCCCCceeee-------------cCCCCCeEEEEEcCCCCeEEEEecC
Q 048012 300 VAVTTCAWDCDGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVE-------------KGHSDDITALKFSSDGRILLSRSFD 366 (616)
Q Consensus 300 ~~v~~~~~sp~g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~-------------~~h~~~V~~l~~spdg~~l~s~s~D 366 (616)
..|++++|+|++++|++|+.||.|++||++++ .....+ ..+...|.+++|+|+|++|++++ +
T Consensus 744 ~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~-~ 818 (1249)
T 3sfz_A 744 NSVNHCRFSPDDELLASCSADGTLRLWDVRSA----NERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAA-K 818 (1249)
T ss_dssp SCEEEEEECSSTTEEEEEESSSEEEEEEGGGT----EEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEE-T
T ss_pred CCEEEEEEecCCCEEEEEECCCeEEEEeCCCC----cccceecccccccccCCccccccceEEEEEECCCCCEEEEEc-C
Confidence 68999999999999999999999999999865 222221 12234689999999999999987 7
Q ss_pred CcEEEEeCCCCCCcceEecCCCCCCcceeEEECCCCCEEEEeeccccccCCCceEEEEeCCCCceEEEEecCCCCCeEEE
Q 048012 367 GSLKVWDLRKMKEPLKVFEDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREKLELVSRVGISPACSVVQC 446 (616)
Q Consensus 367 g~v~lwd~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~ 446 (616)
+.+.+||+.+......... .+...+.+++|+|+++++++++ .+|.|++||+.++..+..+.. |...|.++
T Consensus 819 ~~v~~~d~~~~~~~~~~~~--~~~~~v~~~~~sp~~~~l~~~~-------~dg~v~vwd~~~~~~~~~~~~-h~~~v~~v 888 (1249)
T 3sfz_A 819 NKVLLFDIHTSGLLAEIHT--GHHSTIQYCDFSPYDHLAVIAL-------SQYCVELWNIDSRLKVADCRG-HLSWVHGV 888 (1249)
T ss_dssp TEEEEEETTTCCEEEEEEC--SSSSCCCEEEECSSTTEEEEEC-------SSSCEEEEETTTTEEEEEECC-CSSCEEEE
T ss_pred CcEEEEEecCCCceeEEcC--CCCCceEEEEEcCCCCEEEEEe-------CCCeEEEEEcCCCceeeecCC-CccceEEE
Confidence 8999999997654333332 3456699999999999999999 899999999999999988864 77889999
Q ss_pred EEcCCCCcEEEEeccCCCCceEEEecc-----------------------------------------------------
Q 048012 447 AWHPKLNQIFATAGDKSQGGTHILYDP----------------------------------------------------- 473 (616)
Q Consensus 447 ~~~p~~~~l~~~~~d~~~~~~~~v~~~----------------------------------------------------- 473 (616)
+|+|++..|++++. ++.+.+|++
T Consensus 889 ~~spdg~~l~s~s~----dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 964 (1249)
T 3sfz_A 889 MFSPDGSSFLTASD----DQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQV 964 (1249)
T ss_dssp EECTTSSEEEEEET----TSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCE
T ss_pred EECCCCCEEEEEeC----CCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcE
Confidence 99999999999987 677888863
Q ss_pred ---cCCCCCcEEEEecCCcceecccccCC--------------ceeeCCCCCCcccC
Q 048012 474 ---RLSERGALVCVARAPRKKSVDDFEVA--------------PVIHNPHALPLFRD 513 (616)
Q Consensus 474 ---~~s~~g~~l~s~~~d~~~~~wd~~~~--------------~~~~~p~~~~l~~~ 513 (616)
+++|+|.++++++.++.+.+|++... .+.|+|++..++..
T Consensus 965 ~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~ 1021 (1249)
T 3sfz_A 965 SCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISS 1021 (1249)
T ss_dssp EEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCCEEECSSSSCEEEE
T ss_pred EEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCceEEEEECCCCCEEEEE
Confidence 47899999999999999999998432 35677777666554
No 46
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=7.4e-35 Score=298.02 Aligned_cols=302 Identities=17% Similarity=0.276 Sum_probs=227.1
Q ss_pred CCcceEEecCCcccEEEEEECCCCCEE-EEEEc---CCcEEEEeCCCCccccccceecCCCCCCceEEEEecCC---CCe
Q 048012 138 PMSNEIVLKGHTKIVSALAVDHSGSRV-LSGSY---DYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPT---SDR 210 (616)
Q Consensus 138 p~~~~~~l~~H~~~V~~v~~sp~g~~l-asgs~---Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~---g~~ 210 (616)
|......+.+|...|++|+|+|++..| ++|+. |+.|+|||+.+.... ......|...|.+++|+|+ +.+
T Consensus 7 ~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~----~~~~~~~~~~v~~~~~~~~~~~~~~ 82 (357)
T 3i2n_A 7 PQIIAHIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLK----LLREIEKAKPIKCGTFGATSLQQRY 82 (357)
T ss_dssp CCEEEEEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEE----EEEEEEESSCEEEEECTTCCTTTCC
T ss_pred hHHhhhhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCccc----ceeeecccCcEEEEEEcCCCCCCce
Confidence 334456778999999999999999655 56665 999999999865321 1112246678999999999 699
Q ss_pred EEEEeCCCeEEEEECCCCeeeeEeeCceeEeecccCCCcccceEEEEE------cCCCCCEEEEEeCCCCEEEEECCCcc
Q 048012 211 FLCVTGSAQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEW------HPKTKETILTSSEDGSLRIWDVNEFK 284 (616)
Q Consensus 211 l~~~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~------~p~~~~~l~s~s~Dg~v~iwd~~~~~ 284 (616)
|++++.++.|++||+..... .+..+.+|...|.++.| +|++ .+|++++.|++|++||+.+..
T Consensus 83 l~~~~~dg~i~iwd~~~~~~-----------~~~~~~~~~~~v~~~~~~~~~~~s~~~-~~l~~~~~d~~i~vwd~~~~~ 150 (357)
T 3i2n_A 83 LATGDFGGNLHIWNLEAPEM-----------PVYSVKGHKEIINAIDGIGGLGIGEGA-PEIVTGSRDGTVKVWDPRQKD 150 (357)
T ss_dssp EEEEETTSCEEEECTTSCSS-----------CSEEECCCSSCEEEEEEESGGGCC-CC-CEEEEEETTSCEEEECTTSCS
T ss_pred EEEecCCCeEEEEeCCCCCc-----------cEEEEEecccceEEEeeccccccCCCc-cEEEEEeCCCeEEEEeCCCCC
Confidence 99999999999999986541 13345789999999965 5665 599999999999999998866
Q ss_pred ccceEEeeeccCCCCccEEEEE----ECCCCCeEEEEeCCCcEEEEeCCCCCCCCCceeeecCCCCCeEEEEEcC---CC
Q 048012 285 SQKQVIKPKLARPGRVAVTTCA----WDCDGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHSDDITALKFSS---DG 357 (616)
Q Consensus 285 ~~~~~~~~~~~~~~~~~v~~~~----~sp~g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp---dg 357 (616)
.......... ......+.+++ |++++++|++++.||.|++||++++ .......|...|.+++|+| ++
T Consensus 151 ~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~-----~~~~~~~~~~~v~~~~~~~~~~~~ 224 (357)
T 3i2n_A 151 DPVANMEPVQ-GENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNM-----ALRWETNIKNGVCSLEFDRKDISM 224 (357)
T ss_dssp SCSEEECCCT-TSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTT-----EEEEEEECSSCEEEEEESCSSSSC
T ss_pred CcceeccccC-CCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccC-----ceeeecCCCCceEEEEcCCCCCCC
Confidence 3333222211 11233688888 7899999999999999999999975 2344567889999999999 99
Q ss_pred CeEEEEecCCcEEEEeCCCCCCcceEec---CCCCCCcceeEEECCCCC-EEEEeeccccccCCCceEEEEeCCCCc---
Q 048012 358 RILLSRSFDGSLKVWDLRKMKEPLKVFE---DLPNNYAQTNVAFSPDEQ-LFLTGTSVERESTTGGLLCFYDREKLE--- 430 (616)
Q Consensus 358 ~~l~s~s~Dg~v~lwd~~~~~~~~~~~~---~~~~~~~v~~v~fspdg~-~l~~gs~~~~~~~~dg~i~iwd~~~~~--- 430 (616)
++|++++.||.|++||+++... ...+. ...+...|++++|+|+++ +|++++ .||.|+|||+.++.
T Consensus 225 ~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-------~dg~i~iwd~~~~~~~~ 296 (357)
T 3i2n_A 225 NKLVATSLEGKFHVFDMRTQHP-TKGFASVSEKAHKSTVWQVRHLPQNRELFLTAG-------GAGGLHLWKYEYPIQRS 296 (357)
T ss_dssp CEEEEEESTTEEEEEEEEEEET-TTEEEEEEEECCSSCEEEEEEETTEEEEEEEEE-------TTSEEEEEEEECCSCC-
T ss_pred CEEEEECCCCeEEEEeCcCCCc-ccceeeeccCCCcCCEEEEEECCCCCcEEEEEe-------CCCcEEEeecCCCcccc
Confidence 9999999999999999986433 22222 113456699999999999 899998 89999999987653
Q ss_pred ----------------eEEEEecCCCCCeEEEEEcCCCCcEE-EEeccCCCCceEEEeccc
Q 048012 431 ----------------LVSRVGISPACSVVQCAWHPKLNQIF-ATAGDKSQGGTHILYDPR 474 (616)
Q Consensus 431 ----------------~~~~~~~~~~~~v~~~~~~p~~~~l~-~~~~d~~~~~~~~v~~~~ 474 (616)
++..+. .|...|.+++|+|++..|+ +++. ++.++||++.
T Consensus 297 ~~~~~g~~~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~s~~~----d~~i~iw~~~ 352 (357)
T 3i2n_A 297 KKDSEGIEMGVAGSVSLLQNVT-LSTQPISSLDWSPDKRGLCVCSSF----DQTVRVLIVT 352 (357)
T ss_dssp -CCTTSCCCCCCCEEEEEEEEE-CCSSCEEEEEECSSSTTEEEEEET----TSEEEEEEEC
T ss_pred cccCCCCccccccccceeeccc-cCCCCeeEEEEcCCCCeEEEEecC----CCcEEEEECC
Confidence 344444 2556777888888777777 4444 6677777764
No 47
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=1.1e-34 Score=298.58 Aligned_cols=258 Identities=14% Similarity=0.167 Sum_probs=208.6
Q ss_pred EecCCcccEEEEEECCCCCEEEEEEcCCcEEEEeCCCCccccccceecCCCCCCceEEEEecCCCCeEEEEeCCCeEEEE
Q 048012 144 VLKGHTKIVSALAVDHSGSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSDRFLCVTGSAQAKIY 223 (616)
Q Consensus 144 ~l~~H~~~V~~v~~sp~g~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~s~d~~v~vw 223 (616)
.+..|...|++++|+|++++|++|+.|+.|+|||+.+.. .. .......|...|.+++|+|++++|++++.|+.|++|
T Consensus 3 ~~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~--~~-~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vw 79 (372)
T 1k8k_C 3 YHSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNK--WV-QVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVW 79 (372)
T ss_dssp EEESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTE--EE-EEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEE
T ss_pred eecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCc--EE-eeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEE
Confidence 355699999999999999999999999999999987642 00 122223577789999999999999999999999999
Q ss_pred ECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEEEECCCccccceEEeeeccCCCCccEE
Q 048012 224 DRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPGRVAVT 303 (616)
Q Consensus 224 d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~ 303 (616)
|+....... ...+..|...|.+++|+|++ .+|++++.|+.|++||+........... ....|...|.
T Consensus 80 d~~~~~~~~----------~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~v~i~d~~~~~~~~~~~~--~~~~~~~~i~ 146 (372)
T 1k8k_C 80 TLKGRTWKP----------TLVILRINRAARCVRWAPNE-KKFAVGSGSRVISICYFEQENDWWVCKH--IKKPIRSTVL 146 (372)
T ss_dssp EEETTEEEE----------EEECCCCSSCEEEEEECTTS-SEEEEEETTSSEEEEEEETTTTEEEEEE--ECTTCCSCEE
T ss_pred ECCCCeeee----------eEEeecCCCceeEEEECCCC-CEEEEEeCCCEEEEEEecCCCcceeeee--eecccCCCee
Confidence 997765321 22246788999999999987 6999999999999999987553222211 1234566899
Q ss_pred EEEECCCCCeEEEEeCCCcEEEEeCCCCC--------------CCCCceeeecCCCCCeEEEEEcCCCCeEEEEecCCcE
Q 048012 304 TCAWDCDGKCIAGGIGDGSIQVWNLKPGW--------------GSRPDIHVEKGHSDDITALKFSSDGRILLSRSFDGSL 369 (616)
Q Consensus 304 ~~~~sp~g~~l~~g~~dg~I~iwd~~~~~--------------~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~v 369 (616)
+++|+|++++|++|+.||.|++||++... .....+..+..|...|.+++|+|++++|++++.|+.|
T Consensus 147 ~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i 226 (372)
T 1k8k_C 147 SLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTV 226 (372)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEE
T ss_pred EEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEE
Confidence 99999999999999999999999975210 0225667778999999999999999999999999999
Q ss_pred EEEeCCCCCCcceEecCCCCCCcceeEEECCCCCEEEEeeccccccCCCceEEEEeCCC
Q 048012 370 KVWDLRKMKEPLKVFEDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREK 428 (616)
Q Consensus 370 ~lwd~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~ 428 (616)
++||+++.. ++..+..+ ...+.+++|+|++++|+++ .++.|++|++.+
T Consensus 227 ~i~d~~~~~-~~~~~~~~--~~~v~~~~~~~~~~~l~~~--------~d~~i~i~~~~~ 274 (372)
T 1k8k_C 227 CLADADKKM-AVATLASE--TLPLLAVTFITESSLVAAG--------HDCFPVLFTYDS 274 (372)
T ss_dssp EEEEGGGTT-EEEEEECS--SCCEEEEEEEETTEEEEEE--------TTSSCEEEEEET
T ss_pred EEEECCCCc-eeEEEccC--CCCeEEEEEecCCCEEEEE--------eCCeEEEEEccC
Confidence 999998754 45555543 4569999999999988887 489999999987
No 48
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.3e-36 Score=322.61 Aligned_cols=326 Identities=9% Similarity=0.048 Sum_probs=233.7
Q ss_pred CcccEEEEEECCCC---------CEEEE-------------------EEcCCcEEEEeCCCCccccccceecCCCCCCce
Q 048012 148 HTKIVSALAVDHSG---------SRVLS-------------------GSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQV 199 (616)
Q Consensus 148 H~~~V~~v~~sp~g---------~~las-------------------gs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v 199 (616)
+.+.|.+|+|+|++ ++||+ ++.|++|+||++.+...... .......+...|
T Consensus 132 ~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~~~~~~~~~~laS~s~D~tI~iWd~~~~~~~~~-~~~~l~~~~~~V 210 (524)
T 2j04_B 132 VGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMDEPLNEHLEMFDKEKHSSCIQIFKMNTSTLHCV-KVQTIVHSFGEV 210 (524)
T ss_dssp CCC--CCCSCEEECCCCSSCSSEEEEEEEEEC------------------CEEEEEEEEETTTCCEE-EEEEEEECCCSE
T ss_pred CCCceeEEEecccCCCCccCcCCeEEEEEEecccCCccchhhhhhccCCCCceEEEEEccCCCCCce-EEEEEEecCCcE
Confidence 56778888888775 55555 55789999999876432111 111123456679
Q ss_pred EEEEecCC------CCeEEEEeCCCeEEEEECCCCeee--eEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeC
Q 048012 200 RNLSWSPT------SDRFLCVTGSAQAKIYDRDGLTLG--EFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSE 271 (616)
Q Consensus 200 ~~l~~sp~------g~~l~~~s~d~~v~vwd~~~~~~~--~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~ 271 (616)
.+++|+|+ +.+|++++.|++|+|||+...... .... .......+.+|...|++++|+++ ..|++|+.
T Consensus 211 ~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~---~~~p~~~l~~h~~~v~sv~~s~~--~~lasgs~ 285 (524)
T 2j04_B 211 WDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKM---CEKPSLTLSLADSLITTFDFLSP--TTVVCGFK 285 (524)
T ss_dssp EEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEEC---CCSCSEEECCTTTCEEEEEESSS--SEEEEEET
T ss_pred EEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCcccccccee---ecCceEEEEcCCCCEEEEEecCC--CeEEEEeC
Confidence 99999997 579999999999999999755321 0000 00112346789999999999985 48999999
Q ss_pred CCCEEEEECCCccccceEEeeeccCCCCccEEEE--EECCCC-CeEEEEeCCCcEEEEeCCCCCCCCCceeeecCCCC--
Q 048012 272 DGSLRIWDVNEFKSQKQVIKPKLARPGRVAVTTC--AWDCDG-KCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHSD-- 346 (616)
Q Consensus 272 Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~--~~sp~g-~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~h~~-- 346 (616)
||+|++||+.+........ ..|...|+++ +|+++| ++||+|+.||+|+|||++++ .....+.+|..
T Consensus 286 DgtV~lWD~~~~~~~~~~~-----~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~----~~~~~~~~~~~~~ 356 (524)
T 2j04_B 286 NGFVAEFDLTDPEVPSFYD-----QVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDI----ATTKTTVSRFRGS 356 (524)
T ss_dssp TSEEEEEETTBCSSCSEEE-----ECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGH----HHHCEEEEECSCC
T ss_pred CCEEEEEECCCCCCceEEe-----ecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCC----CcccccccccccC
Confidence 9999999998754332222 2455689999 678888 89999999999999999865 34445556653
Q ss_pred CeEEEEEcCCCCeEEEEecCCcEEEEeCCCCCCcceEecCCCCCCcceeEEECCCCCEEEEeeccccccCCCceEEEEeC
Q 048012 347 DITALKFSSDGRILLSRSFDGSLKVWDLRKMKEPLKVFEDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDR 426 (616)
Q Consensus 347 ~V~~l~~spdg~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~ 426 (616)
.|.+|+|+|+++.|++++.|++|+|||+++... +..+.. +...|++|+|+|++++|++|+ .||.|+|||+
T Consensus 357 ~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~-~~~l~g--H~~~V~sva~Sp~g~~l~Sgs-------~Dgtv~lwd~ 426 (524)
T 2j04_B 357 NLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFA-VHPLVS--RETTITAIGVSRLHPMVLAGS-------ADGSLIITNA 426 (524)
T ss_dssp SCCCEEEETTTTEEEEECSSSEEEEEETTCTTC-CEEEEE--CSSCEEEEECCSSCCBCEEEE-------TTTEEECCBS
T ss_pred cccceEeCCCcCeEEEeCCCCcEEEEECccccc-ceeeec--CCCceEEEEeCCCCCeEEEEE-------CCCEEEEEec
Confidence 588999999999999999999999999997543 445555 445699999999999999999 8999999998
Q ss_pred CCCceEEEEe----cCCCCCeEEEEEcCCCCcEEEEec--------cC-----CCCceEEEecccCCCCC---cEEEEec
Q 048012 427 EKLELVSRVG----ISPACSVVQCAWHPKLNQIFATAG--------DK-----SQGGTHILYDPRLSERG---ALVCVAR 486 (616)
Q Consensus 427 ~~~~~~~~~~----~~~~~~v~~~~~~p~~~~l~~~~~--------d~-----~~~~~~~v~~~~~s~~g---~~l~s~~ 486 (616)
... ++..+. ......|.+++|+|+++.+..... .+ ..++...|+.++|+|++ .+||+++
T Consensus 427 ~~~-~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~~~~~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~~~~~~~lAsg~ 505 (524)
T 2j04_B 427 ARR-LLHGIKNSSATQKSLRLWKWDYSIKDDKYRIDSSYEVYPLTVNDVSKAKIDAHGINITCTKWNETSAGGKCYAFSN 505 (524)
T ss_dssp CSS-TTTCC------CCCCEEEECBCCSSSCEEEECCCCCCCC-------------CCCSCCCEEECCSTTTTTEEEEEC
T ss_pred hHh-hccccccCccceeeeEEEEeccCCCCCeEEccCCceecccccCCcceeeecCCCceEEEEECCCCCCccHHHHhhc
Confidence 654 222111 011124678999998874422110 00 33566778999999995 4999999
Q ss_pred CCcceecccccCC
Q 048012 487 APRKKSVDDFEVA 499 (616)
Q Consensus 487 ~d~~~~~wd~~~~ 499 (616)
.+++|+||++...
T Consensus 506 ~~g~vrlw~l~~~ 518 (524)
T 2j04_B 506 SAGLLTLEYLSLE 518 (524)
T ss_dssp TTSEEEEEECSCC
T ss_pred cCceEEEEEcccc
Confidence 9999999998653
No 49
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.3e-35 Score=295.69 Aligned_cols=280 Identities=15% Similarity=0.193 Sum_probs=208.2
Q ss_pred CCCCCceEEEEecCCCCeEEEEeCCCeEEEEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCC
Q 048012 193 PSEGHQVRNLSWSPTSDRFLCVTGSAQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSED 272 (616)
Q Consensus 193 ~~~~~~v~~l~~sp~g~~l~~~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~D 272 (616)
..|...|.+++|+++ +|++++.|+.|+||++........ ......+|...|.+++|+|++ .+|++|+.|
T Consensus 11 ~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~--------~~~~~~~h~~~v~~v~~sp~~-~~las~s~D 79 (330)
T 2hes_X 11 KLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLI--------DVLDETAHKKAIRSVAWRPHT-SLLAAGSFD 79 (330)
T ss_dssp ECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEE--------EEECTTCCCSCEEEEEECTTS-SEEEEEETT
T ss_pred ccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEE--------EEEecCCccCCEEEEEECCCC-CEEEEEeCC
Confidence 357788999999987 999999999999999986432110 011123499999999999987 699999999
Q ss_pred CCEEEEECCCcccc-ceEEeeeccCCCCccEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCCCCCceeeecCCCCCeEEE
Q 048012 273 GSLRIWDVNEFKSQ-KQVIKPKLARPGRVAVTTCAWDCDGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHSDDITAL 351 (616)
Q Consensus 273 g~v~iwd~~~~~~~-~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l 351 (616)
++|+|||+...... ..........+|...|.+++|+|+|++|++|+.|++|+|||++........+..+.+|...|.+|
T Consensus 80 ~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v 159 (330)
T 2hes_X 80 STVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHV 159 (330)
T ss_dssp SCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEE
T ss_pred CcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEE
Confidence 99999998643210 00001111235667899999999999999999999999999954311224566788999999999
Q ss_pred EEcCCCCeEEEEecCCcEEEEeCCCCC-CcceEecCCCCCCcceeEEECCC--CCEEEEeeccccccCCCceEEEEeCCC
Q 048012 352 KFSSDGRILLSRSFDGSLKVWDLRKMK-EPLKVFEDLPNNYAQTNVAFSPD--EQLFLTGTSVERESTTGGLLCFYDREK 428 (616)
Q Consensus 352 ~~spdg~~l~s~s~Dg~v~lwd~~~~~-~~~~~~~~~~~~~~v~~v~fspd--g~~l~~gs~~~~~~~~dg~i~iwd~~~ 428 (616)
+|+|++++|++++.|++|+|||++... .++..+.. +...|.+++|+|+ +.+|++|+ .|+.|+|||+..
T Consensus 160 ~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~--h~~~v~~~~~~~~~~~~~l~s~s-------~D~~v~iw~~~~ 230 (330)
T 2hes_X 160 IWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNG--HEGTVWSSDFDKTEGVFRLCSGS-------DDSTVRVWKYMG 230 (330)
T ss_dssp EECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECC--CSSCEEEEEECCSSSSCEEEEEE-------TTSCEEEEEEEE
T ss_pred EECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccC--CCCcEEEEEecCCCCeeEEEEEe-------CCCeEEEEEecC
Confidence 999999999999999999999987542 34555555 4456999999999 77899999 899999999875
Q ss_pred C--------ceEEEEecCCCCCeEEEEEcCCCCcEEEEeccCCCCceEEE-----------------------ecccCCC
Q 048012 429 L--------ELVSRVGISPACSVVQCAWHPKLNQIFATAGDKSQGGTHIL-----------------------YDPRLSE 477 (616)
Q Consensus 429 ~--------~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~~~~~~~v-----------------------~~~~~s~ 477 (616)
+ .++..+...|...|.+++|+++ ..|++++.| +.++| +.++|+|
T Consensus 231 ~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~-~~l~s~~~d----g~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~ 305 (330)
T 2hes_X 231 DDEDDQQEWVCEAILPDVHKRQVYNVAWGFN-GLIASVGAD----GVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLE 305 (330)
T ss_dssp ECTTSCEEEEEEEECCSCCSSCEEEEEECTT-SCEEEEETT----SCEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC-
T ss_pred CCccccceeEEeeecccccccceEEEEEcCC-CEEEEEeCC----CEEEEEEcCCCceEEEeccccccccceEEEEEEec
Confidence 4 3334443336788999999976 478888874 34444 4455667
Q ss_pred --CCcEEEEecCCcceeccccc
Q 048012 478 --RGALVCVARAPRKKSVDDFE 497 (616)
Q Consensus 478 --~g~~l~s~~~d~~~~~wd~~ 497 (616)
++.+|++++.|+.+++|++.
T Consensus 306 ~~~~~~las~s~Dg~v~~W~~~ 327 (330)
T 2hes_X 306 LNGKTILATGGDDGIVNFWSLE 327 (330)
T ss_dssp ----CCEEEEETTSEEEEEEC-
T ss_pred CCCceEEEEecCCCcEEEEEec
Confidence 68899999999999999975
No 50
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.9e-35 Score=308.04 Aligned_cols=309 Identities=14% Similarity=0.202 Sum_probs=241.5
Q ss_pred cCCcccEEEEEECCCCCEEEEEEcCCcEEEEeCCCCccccccceecCCCCCCceEEEEecCC-CCeEEEEeCCCeEEEEE
Q 048012 146 KGHTKIVSALAVDHSGSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPT-SDRFLCVTGSAQAKIYD 224 (616)
Q Consensus 146 ~~H~~~V~~v~~sp~g~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~-g~~l~~~s~d~~v~vwd 224 (616)
..|...|++++|+|++.+|++|+.||.|+||++........ .......|...|.+++|+|+ +.+|++++.|+.|++||
T Consensus 64 ~~~~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~-~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd 142 (416)
T 2pm9_A 64 LQVDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAIN-SMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWD 142 (416)
T ss_dssp CCCSSCEEEEEECSSSSCEEEEESSSCEEEECCSSTTSCCC-EEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCB
T ss_pred EecCCceEEEEECCCCCeEEEEccCCeEEEeeccccccccc-chhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEE
Confidence 36889999999999999999999999999999986321111 22333457778999999998 89999999999999999
Q ss_pred CCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEEEECCCccccceEEeeeccCCCCccEEE
Q 048012 225 RDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPGRVAVTT 304 (616)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~ 304 (616)
+........ ......+....+|...|.+++|+|++..+|++++.|+.|++||+.+.+....+.......++...|.+
T Consensus 143 ~~~~~~~~~---~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~ 219 (416)
T 2pm9_A 143 MNKCTESPS---NYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSV 219 (416)
T ss_dssp TTTTSSCTT---TCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEE
T ss_pred CCCCccccc---cccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEE
Confidence 986541000 00001123457899999999999986689999999999999999887655444332222223568999
Q ss_pred EEECCCC-CeEEEEeCCC---cEEEEeCCCCCCCCCceeeec-CCCCCeEEEEEcC-CCCeEEEEecCCcEEEEeCCCCC
Q 048012 305 CAWDCDG-KCIAGGIGDG---SIQVWNLKPGWGSRPDIHVEK-GHSDDITALKFSS-DGRILLSRSFDGSLKVWDLRKMK 378 (616)
Q Consensus 305 ~~~sp~g-~~l~~g~~dg---~I~iwd~~~~~~~~~~~~~~~-~h~~~V~~l~~sp-dg~~l~s~s~Dg~v~lwd~~~~~ 378 (616)
++|+|++ .+|++++.|+ .|++||++++. ..+..+. +|...|++++|+| ++++|++++.|++|++||+++.
T Consensus 220 ~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~---~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~- 295 (416)
T 2pm9_A 220 VEWHPKNSTRVATATGSDNDPSILIWDLRNAN---TPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESA- 295 (416)
T ss_dssp EEECSSCTTEEEEEECCSSSCCCCEEETTSTT---SCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSC-
T ss_pred EEECCCCCCEEEEEECCCCCceEEEEeCCCCC---CCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCC-
Confidence 9999997 6899999999 99999998742 4555666 8999999999999 9999999999999999999875
Q ss_pred CcceEecCCCCCCcceeEEECCCC-CEEEEeeccccccCCCceEEEEeCCCCceEEEEec--------------------
Q 048012 379 EPLKVFEDLPNNYAQTNVAFSPDE-QLFLTGTSVERESTTGGLLCFYDREKLELVSRVGI-------------------- 437 (616)
Q Consensus 379 ~~~~~~~~~~~~~~v~~v~fspdg-~~l~~gs~~~~~~~~dg~i~iwd~~~~~~~~~~~~-------------------- 437 (616)
.++..+..+ ...|++++|+|++ .+|++++ .||.|+|||+.+.........
T Consensus 296 ~~~~~~~~~--~~~v~~~~~s~~~~~~l~s~~-------~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (416)
T 2pm9_A 296 EQLSQFPAR--GNWCFKTKFAPEAPDLFACAS-------FDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREE 366 (416)
T ss_dssp CEEEEEECS--SSCCCCEEECTTCTTEEEECC-------SSSEEEEEESCCCCCSSCC----------------------
T ss_pred ccceeecCC--CCceEEEEECCCCCCEEEEEe-------cCCcEEEEEccCCCCCcccccccccccCCcccccccccccc
Confidence 445555553 4569999999999 8999998 899999999987653221100
Q ss_pred --------------CCCCCeEEEEEcCCCCcEEEEeccCCCCceEEEecccC
Q 048012 438 --------------SPACSVVQCAWHPKLNQIFATAGDKSQGGTHILYDPRL 475 (616)
Q Consensus 438 --------------~~~~~v~~~~~~p~~~~l~~~~~d~~~~~~~~v~~~~~ 475 (616)
.+...+..++|+|++..|++++. ++.+.||++..
T Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~la~~~~----d~~v~~w~~~~ 414 (416)
T 2pm9_A 367 SKEKPSVFHLQAPTWYGEPSPAAHWAFGGKLVQITPD----GKGVSITNPKI 414 (416)
T ss_dssp CCSCCCSSCCCCCSTTCCCSCCCEEETTTEEECBCTT----SSCBCCBCCCC
T ss_pred cccccccccccCCccccCCccceEEeeCCeEEEEeCC----CCeEEEEEecc
Confidence 03456779999999998888876 78899999864
No 51
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=2.4e-34 Score=293.55 Aligned_cols=280 Identities=17% Similarity=0.197 Sum_probs=216.8
Q ss_pred CCCCCCceEEEEe-----cC-CCCeEEEEeCCCeEEEEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCE
Q 048012 192 EPSEGHQVRNLSW-----SP-TSDRFLCVTGSAQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKET 265 (616)
Q Consensus 192 ~~~~~~~v~~l~~-----sp-~g~~l~~~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~ 265 (616)
...|...|++++| ++ ++.+|++++.|+.|+|||+....... ........+.+|...|.+++|+|++ .+
T Consensus 17 l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~-----~~~~~~~~l~~h~~~V~~~~~~~~~-~~ 90 (343)
T 2xzm_R 17 LEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNG-----YFGIPHKALTGHNHFVSDLALSQEN-CF 90 (343)
T ss_dssp EECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSS-----BSEEEEEEECCCSSCEEEEEECSST-TE
T ss_pred eccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCccc-----ccccccchhccCCCceEEEEECCCC-CE
Confidence 4468888999999 76 89999999999999999987543110 0011234568999999999999987 59
Q ss_pred EEEEeCCCCEEEEECCCccccceEEeeeccCCCCccEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCCCCCceeeecCCC
Q 048012 266 ILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWDCDGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHS 345 (616)
Q Consensus 266 l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~h~ 345 (616)
|++++.|++|+|||+.+++....+. +|...|.+++|+|++++|++|+.|++|++||+... ..........|.
T Consensus 91 l~s~s~D~~v~lwd~~~~~~~~~~~------~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~--~~~~~~~~~~~~ 162 (343)
T 2xzm_R 91 AISSSWDKTLRLWDLRTGTTYKRFV------GHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGE--CKFSSAEKENHS 162 (343)
T ss_dssp EEEEETTSEEEEEETTSSCEEEEEE------CCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSC--EEEECCTTTSCS
T ss_pred EEEEcCCCcEEEEECCCCcEEEEEc------CCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCC--ceeeeecccCCC
Confidence 9999999999999999876544332 45568999999999999999999999999999742 111112234788
Q ss_pred CCeEEEEEcCCC----------CeEEEEecCCcEEEEeCCCCCCcceEecCCCCCCcceeEEECCCCCEEEEeecccccc
Q 048012 346 DDITALKFSSDG----------RILLSRSFDGSLKVWDLRKMKEPLKVFEDLPNNYAQTNVAFSPDEQLFLTGTSVERES 415 (616)
Q Consensus 346 ~~V~~l~~spdg----------~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~gs~~~~~~ 415 (616)
..|.+++|+|++ .+|++++.|++|++||.. ......+.. +...|.+++|+|++++|++|+
T Consensus 163 ~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~--~~~~~~~~~--h~~~v~~~~~s~~g~~l~sgs------ 232 (343)
T 2xzm_R 163 DWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTN--FQIRYTFKA--HESNVNHLSISPNGKYIATGG------ 232 (343)
T ss_dssp SCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETT--TEEEEEEEC--CSSCEEEEEECTTSSEEEEEE------
T ss_pred ceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCC--CceeEEEcC--ccccceEEEECCCCCEEEEEc------
Confidence 999999999987 799999999999999954 233444544 445699999999999999999
Q ss_pred CCCceEEEEeCC-CCceEEEEecCCCCCeEEEEEcCCCCcEEEEeccC-----C-----------C-----------Cce
Q 048012 416 TTGGLLCFYDRE-KLELVSRVGISPACSVVQCAWHPKLNQIFATAGDK-----S-----------Q-----------GGT 467 (616)
Q Consensus 416 ~~dg~i~iwd~~-~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~-----~-----------~-----------~~~ 467 (616)
.||.|+|||+. .......+. +...|.+++|+|++..|+++..+. . . ++.
T Consensus 233 -~dg~v~iwd~~~~~~~~~~~~--~~~~v~~v~~sp~~~~la~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (343)
T 2xzm_R 233 -KDKKLLIWDILNLTYPQREFD--AGSTINQIAFNPKLQWVAVGTDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKN 309 (343)
T ss_dssp -TTCEEEEEESSCCSSCSEEEE--CSSCEEEEEECSSSCEEEEEESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSC
T ss_pred -CCCeEEEEECCCCcccceeec--CCCcEEEEEECCCCCEEEEECCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCC
Confidence 89999999994 444445443 345699999999987766554321 0 0 222
Q ss_pred EEEecccCCCCCcEEEEecCCcceecccccC
Q 048012 468 HILYDPRLSERGALVCVARAPRKKSVDDFEV 498 (616)
Q Consensus 468 ~~v~~~~~s~~g~~l~s~~~d~~~~~wd~~~ 498 (616)
..++.++|+|+|.+|++++.|+.+++|++..
T Consensus 310 ~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~~ 340 (343)
T 2xzm_R 310 PQCTSLAWNALGKKLFAGFTDGVIRTFSFET 340 (343)
T ss_dssp CCEEEEEECSSSCCEEEEETTSEEEEEEEEE
T ss_pred CceEEEEECCCCCeEEEecCCceEEEEEEEc
Confidence 3355677899999999999999999999854
No 52
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=7.8e-35 Score=307.31 Aligned_cols=277 Identities=16% Similarity=0.234 Sum_probs=218.3
Q ss_pred CCCceEEEEecCC-CCeEEEEeCCCeEEEEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCC
Q 048012 195 EGHQVRNLSWSPT-SDRFLCVTGSAQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDG 273 (616)
Q Consensus 195 ~~~~v~~l~~sp~-g~~l~~~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg 273 (616)
+...|++|+|+|. +.+|++|+.||.|+|||+....... +..+.+|...|++++|+|.+..+|++|+.|+
T Consensus 118 ~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~----------~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~ 187 (435)
T 4e54_B 118 FDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPT----------FIKGIGAGGSITGLKFNPLNTNQFYASSMEG 187 (435)
T ss_dssp CSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCE----------EECCCSSSCCCCEEEECSSCTTEEEEECSSS
T ss_pred CCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCcee----------EEEccCCCCCEEEEEEeCCCCCEEEEEeCCC
Confidence 4556999999994 6789999999999999998654321 2335789999999999996667999999999
Q ss_pred CEEEEECCCccccceEEeeeccCCCCccEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCCCCCceeeecCCCCCeEEEEE
Q 048012 274 SLRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWDCDGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHSDDITALKF 353 (616)
Q Consensus 274 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~ 353 (616)
+|+|||+..... ..+ .....+...+.+++|++++++|++|+.||.|++||++. ..+..+.+|...|++|+|
T Consensus 188 ~v~iwd~~~~~~-~~~---~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~-----~~~~~~~~h~~~v~~v~~ 258 (435)
T 4e54_B 188 TTRLQDFKGNIL-RVF---ASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDG-----KELWNLRMHKKKVTHVAL 258 (435)
T ss_dssp CEEEEETTSCEE-EEE---ECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSS-----CBCCCSBCCSSCEEEEEE
T ss_pred EEEEeeccCCce-eEE---eccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCc-----ceeEEEecccceEEeeee
Confidence 999999975322 111 12223444688999999999999999999999999975 356678899999999999
Q ss_pred cCCCC-eEEEEecCCcEEEEeCCCCCCcceEecCCCCCCcceeEEECCCCCEEEEeeccccccCCCceEEEEeCCCCceE
Q 048012 354 SSDGR-ILLSRSFDGSLKVWDLRKMKEPLKVFEDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREKLELV 432 (616)
Q Consensus 354 spdg~-~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~~~~~ 432 (616)
+|++. +|++++.|++|+|||+++............+...|++++|+|+|++|++++ .||.|+|||+.+++++
T Consensus 259 ~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~-------~D~~i~iwd~~~~~~~ 331 (435)
T 4e54_B 259 NPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTD-------QKSEIRVYSASQWDCP 331 (435)
T ss_dssp CTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEE-------SSSCEEEEESSSSSSE
T ss_pred cCCCceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEc-------CCCEEEEEECCCCccc
Confidence 99876 788999999999999987654433333344667799999999999999999 8999999999999888
Q ss_pred EEEecCCC-----CCeEEEEEcCCCCcEEEEeccC--------CCCceEEEecc---------------------cCCCC
Q 048012 433 SRVGISPA-----CSVVQCAWHPKLNQIFATAGDK--------SQGGTHILYDP---------------------RLSER 478 (616)
Q Consensus 433 ~~~~~~~~-----~~v~~~~~~p~~~~l~~~~~d~--------~~~~~~~v~~~---------------------~~s~~ 478 (616)
..+..... ..+..+.|+|++..++++..+. ..++.+.+|+. +|+|+
T Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspd 411 (435)
T 4e54_B 332 LGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPM 411 (435)
T ss_dssp EEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECTT
T ss_pred eEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCC
Confidence 77643211 2355678999888888876532 12445667752 48899
Q ss_pred CcEEEEecCCcceecccccC
Q 048012 479 GALVCVARAPRKKSVDDFEV 498 (616)
Q Consensus 479 g~~l~s~~~d~~~~~wd~~~ 498 (616)
|.+|++++ |+.|+||++..
T Consensus 412 g~~lasg~-d~~i~iW~~~~ 430 (435)
T 4e54_B 412 GDTLASAM-GYHILIWSQQE 430 (435)
T ss_dssp SSCEEEEC-SSEEEECCCC-
T ss_pred CCEEEEEc-CCcEEEEECCc
Confidence 99999876 78899999864
No 53
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=2e-34 Score=343.62 Aligned_cols=326 Identities=17% Similarity=0.270 Sum_probs=244.9
Q ss_pred ceEEecCCcccEEEEEECCCCCEEEEEEcCCcEEEEeCCCCccccccceecCCCCCCceEEEEecC--CCCeEEEEeCCC
Q 048012 141 NEIVLKGHTKIVSALAVDHSGSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSP--TSDRFLCVTGSA 218 (616)
Q Consensus 141 ~~~~l~~H~~~V~~v~~sp~g~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp--~g~~l~~~s~d~ 218 (616)
....+.+|...|++++|+|+|++||+|+.|++|+|||+.++. .......|...|.+++|++ ++..+++++.|+
T Consensus 649 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~-----~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~ 723 (1249)
T 3sfz_A 649 KLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGK-----LVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDF 723 (1249)
T ss_dssp EEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCC-----EEEEEECCSSCEEEEEECSSSSCCEEEEEETTS
T ss_pred EEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCc-----eEEEEcCCCCcEEEEEEecCCCceEEEEEeCCC
Confidence 345788999999999999999999999999999999998753 1222235778899999999 455788999999
Q ss_pred eEEEEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEEEECCCccccceEEee------
Q 048012 219 QAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKP------ 292 (616)
Q Consensus 219 ~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~------ 292 (616)
.|++||+..... +..+.+|...|++++|+|++ .+|++++.||+|++||+.+......+...
T Consensus 724 ~v~vwd~~~~~~------------~~~~~~h~~~v~~~~~sp~~-~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~ 790 (1249)
T 3sfz_A 724 FLKLWDLNQKEC------------RNTMFGHTNSVNHCRFSPDD-ELLASCSADGTLRLWDVRSANERKSINVKRFFLSS 790 (1249)
T ss_dssp CEEEEETTSSSE------------EEEECCCSSCEEEEEECSST-TEEEEEESSSEEEEEEGGGTEEEEEEECCCCC---
T ss_pred eEEEEECCCcch------------hheecCCCCCEEEEEEecCC-CEEEEEECCCeEEEEeCCCCcccceeccccccccc
Confidence 999999987653 23356899999999999987 59999999999999999765433222110
Q ss_pred -------------------------------------------eccCCCCccEEEEEECCCCCeEEEEeCCCcEEEEeCC
Q 048012 293 -------------------------------------------KLARPGRVAVTTCAWDCDGKCIAGGIGDGSIQVWNLK 329 (616)
Q Consensus 293 -------------------------------------------~~~~~~~~~v~~~~~sp~g~~l~~g~~dg~I~iwd~~ 329 (616)
.....+...|.+++|+|+++++++++.||.|++||+.
T Consensus 791 ~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~ 870 (1249)
T 3sfz_A 791 EDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNID 870 (1249)
T ss_dssp -----CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETT
T ss_pred CCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcC
Confidence 0011455678999999999999999999999999999
Q ss_pred CCCCCCCceeeecCCCCCeEEEEEcCCCCeEEEEecCCcEEEEeCCCC--------------------------------
Q 048012 330 PGWGSRPDIHVEKGHSDDITALKFSSDGRILLSRSFDGSLKVWDLRKM-------------------------------- 377 (616)
Q Consensus 330 ~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~v~lwd~~~~-------------------------------- 377 (616)
++ ..+..+.+|...|++++|+|++++|++++.|++|++||+.+.
T Consensus 871 ~~----~~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 946 (1249)
T 3sfz_A 871 SR----LKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGL 946 (1249)
T ss_dssp TT----EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSE
T ss_pred CC----ceeeecCCCccceEEEEECCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcce
Confidence 76 677888999999999999999999999999999999996421
Q ss_pred ----------------------------------------------CCcceEecCCCCCCcceeEEECCCCCEEEEeecc
Q 048012 378 ----------------------------------------------KEPLKVFEDLPNNYAQTNVAFSPDEQLFLTGTSV 411 (616)
Q Consensus 378 ----------------------------------------------~~~~~~~~~~~~~~~v~~v~fspdg~~l~~gs~~ 411 (616)
......+ ..+...|++++|+|++++|++++
T Consensus 947 ~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~--~~h~~~v~~l~~s~dg~~l~s~~-- 1022 (1249)
T 3sfz_A 947 QLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSG--VGHKKAVRHIQFTADGKTLISSS-- 1022 (1249)
T ss_dssp EEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEEC--CCCSSCCCCEEECSSSSCEEEEC--
T ss_pred EEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeec--ccCCCceEEEEECCCCCEEEEEc--
Confidence 0001111 12455689999999999999988
Q ss_pred ccccCCCceEEEEeCCCC----------------------------------------ceEEEEecCCCCCeEEEEEcCC
Q 048012 412 ERESTTGGLLCFYDREKL----------------------------------------ELVSRVGISPACSVVQCAWHPK 451 (616)
Q Consensus 412 ~~~~~~dg~i~iwd~~~~----------------------------------------~~~~~~~~~~~~~v~~~~~~p~ 451 (616)
.||.|++||+.++ +.+..+.. |...|.+++|+|+
T Consensus 1023 -----~dg~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~-~~~~v~~~~~s~d 1096 (1249)
T 3sfz_A 1023 -----EDSVIQVWNWQTGDYVFLQAHQETVKDFRLLQDSRLLSWSFDGTVKVWNVITGRIERDFTC-HQGTVLSCAISSD 1096 (1249)
T ss_dssp -----SSSBEEEEETTTTEEECCBCCSSCEEEEEECSSSEEEEEESSSEEEEEETTTTCCCEEEEC-CSSCCCCEEECSS
T ss_pred -----CCCEEEEEECCCCceEEEecCCCcEEEEEEcCCCcEEEEECCCcEEEEECCCCceeEEEcc-cCCcEEEEEECCC
Confidence 5666666665544 44444432 4455667777777
Q ss_pred CCcEEEEeccC---------------CCCceEEEecccCCCCCcEEEEecCCcceecccccC
Q 048012 452 LNQIFATAGDK---------------SQGGTHILYDPRLSERGALVCVARAPRKKSVDDFEV 498 (616)
Q Consensus 452 ~~~l~~~~~d~---------------~~~~~~~v~~~~~s~~g~~l~s~~~d~~~~~wd~~~ 498 (616)
+..|++++.|+ ..+|...|+.++|+|+|.+|++++.|+.+++||+..
T Consensus 1097 ~~~l~s~s~d~~v~iwd~~~~~~~~~l~~h~~~v~~~~~s~dg~~lat~~~dg~i~vwd~~~ 1158 (1249)
T 3sfz_A 1097 ATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSD 1158 (1249)
T ss_dssp SSSCEEECCSSCCCEECSSSSSCSBCCCCCSSCEEEEEECSSSSEEEEEETTSCCCEEESSS
T ss_pred CCEEEEEcCCCcEEEEECCCcceeeeeccCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCC
Confidence 77777776643 112233334455777777777777777777777643
No 54
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=4.5e-33 Score=290.12 Aligned_cols=304 Identities=15% Similarity=0.256 Sum_probs=232.1
Q ss_pred ceEEecCCcccEEEEEECC-CCCEEEEEEcCCcEEEEeCCCCccccccce--------ecCCCCCCceEEEEecC-CCCe
Q 048012 141 NEIVLKGHTKIVSALAVDH-SGSRVLSGSYDYTVRMYDFQGMNSRLQSFR--------QLEPSEGHQVRNLSWSP-TSDR 210 (616)
Q Consensus 141 ~~~~l~~H~~~V~~v~~sp-~g~~lasgs~Dg~i~iwd~~~~~~~~~~~~--------~~~~~~~~~v~~l~~sp-~g~~ 210 (616)
....+.+|.+.|++|+|+| ++++||+|+.||.|+|||+.+......... .....|...|.+++|+| ++.+
T Consensus 35 ~~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 114 (408)
T 4a11_B 35 DRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGM 114 (408)
T ss_dssp TEEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTC
T ss_pred ceeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcE
Confidence 3457789999999999999 999999999999999999987542211110 00124777899999999 7789
Q ss_pred EEEEeCCCeEEEEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCC--CEEEEEeCCCCEEEEECCCccccce
Q 048012 211 FLCVTGSAQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTK--ETILTSSEDGSLRIWDVNEFKSQKQ 288 (616)
Q Consensus 211 l~~~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~--~~l~s~s~Dg~v~iwd~~~~~~~~~ 288 (616)
|++++.++.|++||+........ ..+...+.++.|++.+. .++++++.|+.|++||+.++.....
T Consensus 115 l~s~~~d~~i~iwd~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~ 181 (408)
T 4a11_B 115 FTSSSFDKTLKVWDTNTLQTADV-------------FNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHI 181 (408)
T ss_dssp EEEEETTSEEEEEETTTTEEEEE-------------EECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEE
T ss_pred EEEEeCCCeEEEeeCCCCcccee-------------ccCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeee
Confidence 99999999999999997764322 23566788999988642 4899999999999999987765443
Q ss_pred EEeeeccCCCCccEEEEEECCCCC-eEEEEeCCCcEEEEeCCCCCC------------CCCceeeecCCCCCeEEEEEcC
Q 048012 289 VIKPKLARPGRVAVTTCAWDCDGK-CIAGGIGDGSIQVWNLKPGWG------------SRPDIHVEKGHSDDITALKFSS 355 (616)
Q Consensus 289 ~~~~~~~~~~~~~v~~~~~sp~g~-~l~~g~~dg~I~iwd~~~~~~------------~~~~~~~~~~h~~~V~~l~~sp 355 (616)
+ ..|...|.+++|+|++. +|++|+.||.|++||++.+.. ..........|...|.+++|+|
T Consensus 182 ~------~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 255 (408)
T 4a11_B 182 L------QGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTS 255 (408)
T ss_dssp E------CCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECT
T ss_pred e------cCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcC
Confidence 3 24555899999999998 589999999999999987521 0111222367889999999999
Q ss_pred CCCeEEEEecCCcEEEEeCCCCCCcceEecCC--CCCCcceeEEECCCCCEEEEeeccccccCCCceEEEEeCCCCceEE
Q 048012 356 DGRILLSRSFDGSLKVWDLRKMKEPLKVFEDL--PNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREKLELVS 433 (616)
Q Consensus 356 dg~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~--~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~~~~~~ 433 (616)
++++|++++.||.|++||+++........... .....+........+..+++++ .++.|++||+.+++++.
T Consensus 256 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~i~v~d~~~~~~~~ 328 (408)
T 4a11_B 256 DGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVP-------YGSTIAVYTVYSGEQIT 328 (408)
T ss_dssp TSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEE-------ETTEEEEEETTTCCEEE
T ss_pred CCCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEe-------cCCEEEEEECcCCccee
Confidence 99999999999999999999765432221111 1111122222233445555555 68999999999999999
Q ss_pred EEecCCCCCeEEEEEcCCCCcEEEEeccCCCCceEEEecccC
Q 048012 434 RVGISPACSVVQCAWHPKLNQIFATAGDKSQGGTHILYDPRL 475 (616)
Q Consensus 434 ~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~~~~~~~v~~~~~ 475 (616)
.+.. |...|.+++|+|++++|++++. ++.+.+|++..
T Consensus 329 ~~~~-~~~~v~~~~~s~~~~~l~s~~~----dg~i~iw~~~~ 365 (408)
T 4a11_B 329 MLKG-HYKTVDCCVFQSNFQELYSGSR----DCNILAWVPSL 365 (408)
T ss_dssp EECC-CSSCEEEEEEETTTTEEEEEET----TSCEEEEEECC
T ss_pred eecc-CCCeEEEEEEcCCCCEEEEECC----CCeEEEEeCCC
Confidence 9874 6788999999999999998887 77899999764
No 55
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=2.6e-34 Score=292.40 Aligned_cols=281 Identities=15% Similarity=0.161 Sum_probs=228.6
Q ss_pred EecCCcccEEEEEECCCCCEEEEEEcCCcEEEEeCCCCccccccceecCCCCCCceEEEEecCCCC-eEEEEeCCCeEEE
Q 048012 144 VLKGHTKIVSALAVDHSGSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSD-RFLCVTGSAQAKI 222 (616)
Q Consensus 144 ~l~~H~~~V~~v~~sp~g~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~-~l~~~s~d~~v~v 222 (616)
...+|.+.|++++|+|++.+|++++.|+.|+||++........ ... ...+...|.+++|+|++. +|++++.++.|++
T Consensus 6 ~~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~-~~~-~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~ 83 (342)
T 1yfq_A 6 IEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVD-LLQ-SLRYKHPLLCCNFIDNTDLQIYVGTVQGEILK 83 (342)
T ss_dssp CSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEE-EEE-EEECSSCEEEEEEEESSSEEEEEEETTSCEEE
T ss_pred cccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCcccc-cee-eeecCCceEEEEECCCCCcEEEEEcCCCeEEE
Confidence 3468999999999999999999999999999999986531111 111 225777899999999999 9999999999999
Q ss_pred EEC-CCCeeeeEeeCceeEeecccCCC--cccceEEEEEcCCCCCEEEEEeCCCCEEEEECCC---------ccccceEE
Q 048012 223 YDR-DGLTLGEFVKGDMYIRDLKNTKG--HICGLTCGEWHPKTKETILTSSEDGSLRIWDVNE---------FKSQKQVI 290 (616)
Q Consensus 223 wd~-~~~~~~~~~~~~~~~~~~~~~~~--h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~---------~~~~~~~~ 290 (616)
|++ .+... ..+.+ |...|.+++|+| + .+|++++.|+.|++||+.+ .+....+
T Consensus 84 wd~~~~~~~-------------~~~~~~~~~~~v~~l~~~~-~-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~- 147 (342)
T 1yfq_A 84 VDLIGSPSF-------------QALTNNEANLGICRICKYG-D-DKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNT- 147 (342)
T ss_dssp ECSSSSSSE-------------EECBSCCCCSCEEEEEEET-T-TEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSS-
T ss_pred EEeccCCce-------------EeccccCCCCceEEEEeCC-C-CEEEEEcCCCeEEEEcccccccccccccCCeeeEE-
Confidence 999 77653 22456 999999999999 5 6999999999999999875 3322222
Q ss_pred eeeccCCCCccEEEEEECCCCCeEEEEeCCCcEEEEeCCC-CCCCCCceeeecCCCCCeEEEEEcC-CCCeEEEEecCCc
Q 048012 291 KPKLARPGRVAVTTCAWDCDGKCIAGGIGDGSIQVWNLKP-GWGSRPDIHVEKGHSDDITALKFSS-DGRILLSRSFDGS 368 (616)
Q Consensus 291 ~~~~~~~~~~~v~~~~~sp~g~~l~~g~~dg~I~iwd~~~-~~~~~~~~~~~~~h~~~V~~l~~sp-dg~~l~s~s~Dg~ 368 (616)
.+...|.+++|++++ |++++.||.|++||++. + ..........|...|.+++|+| ++++|++++.||.
T Consensus 148 ------~~~~~v~~~~~~~~~--l~~~~~d~~i~i~d~~~~~--~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~ 217 (342)
T 1yfq_A 148 ------KVKNKIFTMDTNSSR--LIVGMNNSQVQWFRLPLCE--DDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGR 217 (342)
T ss_dssp ------SSCCCEEEEEECSSE--EEEEESTTEEEEEESSCCT--TCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSE
T ss_pred ------eeCCceEEEEecCCc--EEEEeCCCeEEEEECCccc--cccceeeecCCCCceeEEEECCCCCCEEEEEecCCc
Confidence 244579999999887 99999999999999987 4 2234445667888999999999 9999999999999
Q ss_pred EEEEeCCCC-----CCcceEecCCCC-------CCcceeEEECCCCCEEEEeeccccccCCCceEEEEeCCCCceEEEEe
Q 048012 369 LKVWDLRKM-----KEPLKVFEDLPN-------NYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREKLELVSRVG 436 (616)
Q Consensus 369 v~lwd~~~~-----~~~~~~~~~~~~-------~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~~~~~~~~~ 436 (616)
|+||+++.. ......+..+.. ...|.+++|+|++++|++++ .||.|+|||+.+++++..+.
T Consensus 218 i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-------~dg~i~vwd~~~~~~~~~~~ 290 (342)
T 1yfq_A 218 VAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAG-------SDGIISCWNLQTRKKIKNFA 290 (342)
T ss_dssp EEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEE-------TTSCEEEEETTTTEEEEECC
T ss_pred EEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEec-------CCceEEEEcCccHhHhhhhh
Confidence 999999876 355666666533 34799999999999999999 89999999999999988876
Q ss_pred cCCCCCeEEEEEcCCCCcEEEEecc
Q 048012 437 ISPACSVVQCAWHPKLNQIFATAGD 461 (616)
Q Consensus 437 ~~~~~~v~~~~~~p~~~~l~~~~~d 461 (616)
..|...|.+++ |++.+|++++.|
T Consensus 291 ~~h~~~v~~~~--~~~~~l~s~s~D 313 (342)
T 1yfq_A 291 KFNEDSVVKIA--CSDNILCLATSD 313 (342)
T ss_dssp CCSSSEEEEEE--ECSSEEEEEEEC
T ss_pred cccCCCceEec--CCCCeEEEEecC
Confidence 53366777777 777777776664
No 56
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7e-34 Score=325.06 Aligned_cols=340 Identities=14% Similarity=0.138 Sum_probs=235.4
Q ss_pred eEEecCCcccEEEEEECCCCCEEEEEEcCCcEEEEeCCCCccccccceecCCCCCCceEEEEecCCCCeEEEEeCCCeEE
Q 048012 142 EIVLKGHTKIVSALAVDHSGSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSDRFLCVTGSAQAK 221 (616)
Q Consensus 142 ~~~l~~H~~~V~~v~~sp~g~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~s~d~~v~ 221 (616)
+....+|...|++|+|+|++++||+|+.||+|+||+...... .. ...+...|.+++|+| +++|++++.|+.|+
T Consensus 10 ~~~~~gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~----~~--~~~~~~~V~~l~fsp-g~~L~S~s~D~~v~ 82 (902)
T 2oaj_A 10 ETNKYGMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEV----VI--KLEDRSAIKEMRFVK-GIYLVVINAKDTVY 82 (902)
T ss_dssp EEEEEECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEE----EE--ECSSCCCEEEEEEET-TTEEEEEETTCEEE
T ss_pred cccccCCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEE----EE--EcCCCCCEEEEEEcC-CCEEEEEECcCeEE
Confidence 345569999999999999999999999999999999875321 11 122566799999999 77889999999999
Q ss_pred EEECCCCeeeeEee-----------------------CceeEeec-----------------ccCCCcccceEEEEEcCC
Q 048012 222 IYDRDGLTLGEFVK-----------------------GDMYIRDL-----------------KNTKGHICGLTCGEWHPK 261 (616)
Q Consensus 222 vwd~~~~~~~~~~~-----------------------~~~~~~~~-----------------~~~~~h~~~v~~~~~~p~ 261 (616)
|||+.......... +...+.++ ....+|...|++++|+|+
T Consensus 83 lWd~~~~~~~~~~~~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~ 162 (902)
T 2oaj_A 83 VLSLYSQKVLTTVFVPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPR 162 (902)
T ss_dssp EEETTTCSEEEEEECSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETT
T ss_pred EEECCCCcEEEEEcCCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccC
Confidence 99987543221110 11112221 334678889999999997
Q ss_pred CCCEEEEEeCCCCEEEEECCCccccceEEeee------------ccCCCCccEEEEEECCCCCeEEEEeCCCcEEEEeCC
Q 048012 262 TKETILTSSEDGSLRIWDVNEFKSQKQVIKPK------------LARPGRVAVTTCAWDCDGKCIAGGIGDGSIQVWNLK 329 (616)
Q Consensus 262 ~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~------------~~~~~~~~v~~~~~sp~g~~l~~g~~dg~I~iwd~~ 329 (616)
+..+|++|+.|++| |||+++.+....+.... ....|...|++++|+|+|++|++|+.||+|++||++
T Consensus 163 ~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~ 241 (902)
T 2oaj_A 163 DIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDAN 241 (902)
T ss_dssp EEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETT
T ss_pred CCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECC
Confidence 65689999999999 99998866544432210 001234579999999999999999999999999998
Q ss_pred CCCCCCCceee--e---c-------------CCCCCeEEEEEc----CCC-CeEEEEecC-----CcEEEEe--------
Q 048012 330 PGWGSRPDIHV--E---K-------------GHSDDITALKFS----SDG-RILLSRSFD-----GSLKVWD-------- 373 (616)
Q Consensus 330 ~~~~~~~~~~~--~---~-------------~h~~~V~~l~~s----pdg-~~l~s~s~D-----g~v~lwd-------- 373 (616)
++ ..+.. + . .|...|++++|+ |++ .+|++++.| ..+++|+
T Consensus 242 ~g----~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~ 317 (902)
T 2oaj_A 242 SG----HMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYS 317 (902)
T ss_dssp TC----CEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGG
T ss_pred CC----cEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCcc
Confidence 76 22221 1 1 134568899985 443 456666544 2455555
Q ss_pred ---------------------------------------------------------------CCCCCCcceE------e
Q 048012 374 ---------------------------------------------------------------LRKMKEPLKV------F 384 (616)
Q Consensus 374 ---------------------------------------------------------------~~~~~~~~~~------~ 384 (616)
+.++...... +
T Consensus 318 ~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l 397 (902)
T 2oaj_A 318 ITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNL 397 (902)
T ss_dssp GCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGG
T ss_pred ccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCcc
Confidence 3211100000 0
Q ss_pred cC--------------------------------CCCCCcceeEEECCCCCEEEEeeccccccCCCceEEEEeCCCCceE
Q 048012 385 ED--------------------------------LPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREKLELV 432 (616)
Q Consensus 385 ~~--------------------------------~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~~~~~ 432 (616)
.. ..+...+.+++|+|++++|++|+ .|++|+|||+.++...
T Consensus 398 ~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs-------~DgtVrlWd~~~g~~~ 470 (902)
T 2oaj_A 398 SWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGH-------SNGSVRIYDASHGDIQ 470 (902)
T ss_dssp TTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEE-------TTSEEEEEESSCCTTT
T ss_pred cccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEec-------CCCcEEEEECCCcccc
Confidence 00 00112234566789999999999 8999999999887531
Q ss_pred ----EEEec------CCCCCeEEEEEcCCCCcEEEEeccC---------C------------------------------
Q 048012 433 ----SRVGI------SPACSVVQCAWHPKLNQIFATAGDK---------S------------------------------ 463 (616)
Q Consensus 433 ----~~~~~------~~~~~v~~~~~~p~~~~l~~~~~d~---------~------------------------------ 463 (616)
..+.. .|...|.+++|+|++..|++++.|+ .
T Consensus 471 ~~~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 550 (902)
T 2oaj_A 471 DNASFEVNLSRTLNKAKELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVL 550 (902)
T ss_dssp TTBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSE
T ss_pred CCceEEeechhhcCCCCCCceeEEEecCCCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCcccc
Confidence 12221 4667899999999999999999865 0
Q ss_pred ---------------------CCceEEEecccCCCCCcEEEEecCCcceecccccCCce
Q 048012 464 ---------------------QGGTHILYDPRLSERGALVCVARAPRKKSVDDFEVAPV 501 (616)
Q Consensus 464 ---------------------~~~~~~v~~~~~s~~g~~l~s~~~d~~~~~wd~~~~~~ 501 (616)
.+|...|+.++|||+| +||+++.|++|++||+....+
T Consensus 551 ~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG-~lAsgs~D~tv~lwd~~~~~~ 608 (902)
T 2oaj_A 551 VDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG-FVGIAYAAGSLMLIDRRGPAI 608 (902)
T ss_dssp EECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS-EEEEEETTSEEEEEETTTTEE
T ss_pred ccccccCCCCCCCccceeEEEEcCCCcEEEEEecCCc-EEEEEeCCCcEEEEECCCCeE
Confidence 0133345667789999 999999999999999865433
No 57
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.9e-34 Score=299.71 Aligned_cols=295 Identities=16% Similarity=0.246 Sum_probs=233.9
Q ss_pred CCcccEEEEEECCCCCEEEEEEcCCcEEEEeCCCCccccccceecCCCCCCceEEEEecCCCCeEEEEeCCCeEEEEECC
Q 048012 147 GHTKIVSALAVDHSGSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSDRFLCVTGSAQAKIYDRD 226 (616)
Q Consensus 147 ~H~~~V~~v~~sp~g~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~s~d~~v~vwd~~ 226 (616)
+|...|++++|+|++++|++|+.||.|++||.... .......|...|.+++|+|++++|++++.++.|++||+.
T Consensus 106 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~~~~~~------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~ 179 (425)
T 1r5m_A 106 KTTNQVTCLAWSHDGNSIVTGVENGELRLWNKTGA------LLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVI 179 (425)
T ss_dssp --CBCEEEEEECTTSSEEEEEETTSCEEEEETTSC------EEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETT
T ss_pred CCCCceEEEEEcCCCCEEEEEeCCCeEEEEeCCCC------eeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECC
Confidence 47889999999999999999999999999994431 122233577789999999999999999999999999998
Q ss_pred CCeeeeEeeCceeE---eecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEEEECCCccccceEEeeeccCCCCccEE
Q 048012 227 GLTLGEFVKGDMYI---RDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPGRVAVT 303 (616)
Q Consensus 227 ~~~~~~~~~~~~~~---~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~ 303 (616)
.............. ............+.++.|+++ ..+++++.|+.|++||+.+......+ ..+...|.
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~g~i~~~d~~~~~~~~~~------~~~~~~i~ 251 (425)
T 1r5m_A 180 SGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDD--DKFVIPGPKGAIFVYQITEKTPTGKL------IGHHGPIS 251 (425)
T ss_dssp TTEEEEEECCC---------------CCCBSCCEEEET--TEEEEECGGGCEEEEETTCSSCSEEE------CCCSSCEE
T ss_pred CCcEEEEeeccccCccceeeccccCCcceeeEEEEcCC--CEEEEEcCCCeEEEEEcCCCceeeee------ccCCCceE
Confidence 76643321110000 000001111122889999996 47999999999999999886554433 24555899
Q ss_pred EEEECCCCCeEEEEeCCCcEEEEeCCCCCCCCCceeeecCCCCCeEEEEEcCCCCeEEEEecCCcEEEEeCCCCCCcceE
Q 048012 304 TCAWDCDGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHSDDITALKFSSDGRILLSRSFDGSLKVWDLRKMKEPLKV 383 (616)
Q Consensus 304 ~~~~sp~g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~v~lwd~~~~~~~~~~ 383 (616)
+++|+|++++|++++.||.|++||++.+ ..+..+..|...|.+++|+|++ +|++++.|+.|++||+++.. .+..
T Consensus 252 ~~~~~~~~~~l~~~~~d~~i~i~d~~~~----~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~-~~~~ 325 (425)
T 1r5m_A 252 VLEFNDTNKLLLSASDDGTLRIWHGGNG----NSQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNT-LLAL 325 (425)
T ss_dssp EEEEETTTTEEEEEETTSCEEEECSSSB----SCSEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTE-EEEE
T ss_pred EEEECCCCCEEEEEcCCCEEEEEECCCC----ccceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCc-EeEe
Confidence 9999999999999999999999999875 5677778899999999999999 99999999999999998643 4445
Q ss_pred ecCCCCCCcceeEEECCCCCEEEEeeccccccCCCceEEEEeCCCCc--------------------eEEEEecCCCC-C
Q 048012 384 FEDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREKLE--------------------LVSRVGISPAC-S 442 (616)
Q Consensus 384 ~~~~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~~~--------------------~~~~~~~~~~~-~ 442 (616)
+.. +...+.+++|+|++++|++++ .+|.|+|||+.+++ ++..+...... .
T Consensus 326 ~~~--~~~~i~~~~~s~~~~~l~~~~-------~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (425)
T 1r5m_A 326 SIV--DGVPIFAGRISQDGQKYAVAF-------MDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDY 396 (425)
T ss_dssp EEC--TTCCEEEEEECTTSSEEEEEE-------TTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCC
T ss_pred ccc--CCccEEEEEEcCCCCEEEEEE-------CCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCc
Confidence 544 345699999999999999999 89999999999888 78888653333 8
Q ss_pred eEEEEEcCCCCcEEEEeccCCCCceEEEeccc
Q 048012 443 VVQCAWHPKLNQIFATAGDKSQGGTHILYDPR 474 (616)
Q Consensus 443 v~~~~~~p~~~~l~~~~~d~~~~~~~~v~~~~ 474 (616)
|.+++|+|++++|++++. ++.+.+|++.
T Consensus 397 v~~~~~s~~~~~l~~~~~----dg~i~iw~~~ 424 (425)
T 1r5m_A 397 IFDLSWNCAGNKISVAYS----LQEGSVVAIP 424 (425)
T ss_dssp EEEEEECTTSSEEEEEES----SSCCEEEECC
T ss_pred eEEEEccCCCceEEEEec----CceEEEEeec
Confidence 999999999999999887 7789999874
No 58
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=1.4e-33 Score=283.65 Aligned_cols=269 Identities=20% Similarity=0.340 Sum_probs=219.7
Q ss_pred CCCCCCceEEEEecCCCCeEEEEeCCCeEEEEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeC
Q 048012 192 EPSEGHQVRNLSWSPTSDRFLCVTGSAQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSE 271 (616)
Q Consensus 192 ~~~~~~~v~~l~~sp~g~~l~~~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~ 271 (616)
...|...|.+++|+|++++|++++.|+.|+||++...... ..+.+|...|.+++|+|++ .+|++++.
T Consensus 19 ~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~------------~~~~~h~~~v~~~~~~~~~-~~l~s~~~ 85 (312)
T 4ery_A 19 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE------------KTISGHKLGISDVAWSSDS-NLLVSASD 85 (312)
T ss_dssp ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEE------------EEECCCSSCEEEEEECTTS-SEEEEEET
T ss_pred EcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccc------------hhhccCCCceEEEEEcCCC-CEEEEECC
Confidence 3457778999999999999999999999999998766542 2357899999999999987 69999999
Q ss_pred CCCEEEEECCCccccceEEeeeccCCCCccEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCCCCCceeeecCCCCCeEEE
Q 048012 272 DGSLRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWDCDGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHSDDITAL 351 (616)
Q Consensus 272 Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l 351 (616)
|+.|++||+.+.+....+. .|...|.+++|+|++++|++|+.||.|++||++++ ..+..+..|...|.++
T Consensus 86 d~~i~vwd~~~~~~~~~~~------~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~----~~~~~~~~~~~~v~~~ 155 (312)
T 4ery_A 86 DKTLKIWDVSSGKCLKTLK------GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG----KCLKTLPAHSDPVSAV 155 (312)
T ss_dssp TSEEEEEETTTCCEEEEEE------CCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTC----CEEEEECCCSSCEEEE
T ss_pred CCEEEEEECCCCcEEEEEc------CCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC----EEEEEecCCCCcEEEE
Confidence 9999999998876544332 45558999999999999999999999999999976 5777888999999999
Q ss_pred EEcCCCCeEEEEecCCcEEEEeCCCCCCcceEecCCCCCCcceeEEECCCCCEEEEeeccccccCCCceEEEEeCCCCce
Q 048012 352 KFSSDGRILLSRSFDGSLKVWDLRKMKEPLKVFEDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREKLEL 431 (616)
Q Consensus 352 ~~spdg~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~~~~ 431 (616)
+|+|++++|++++.|+.|++||+++... +..+. ..+...+..++|+|++++|++++ .||.|+|||+.++++
T Consensus 156 ~~~~~~~~l~~~~~d~~i~~wd~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~l~~~~-------~d~~i~iwd~~~~~~ 226 (312)
T 4ery_A 156 HFNRDGSLIVSSSYDGLCRIWDTASGQC-LKTLI-DDDNPPVSFVKFSPNGKYILAAT-------LDNTLKLWDYSKGKC 226 (312)
T ss_dssp EECTTSSEEEEEETTSCEEEEETTTCCE-EEEEC-CSSCCCEEEEEECTTSSEEEEEE-------TTTEEEEEETTTTEE
T ss_pred EEcCCCCEEEEEeCCCcEEEEECCCCce-eeEEe-ccCCCceEEEEECCCCCEEEEEc-------CCCeEEEEECCCCcE
Confidence 9999999999999999999999987543 33332 22345689999999999999999 899999999999999
Q ss_pred EEEEecCCCC-CeEEEEEc-CCCCcEEEEeccCCCCceEEEec-------------------ccCCCCCcEEEEec--CC
Q 048012 432 VSRVGISPAC-SVVQCAWH-PKLNQIFATAGDKSQGGTHILYD-------------------PRLSERGALVCVAR--AP 488 (616)
Q Consensus 432 ~~~~~~~~~~-~v~~~~~~-p~~~~l~~~~~d~~~~~~~~v~~-------------------~~~s~~g~~l~s~~--~d 488 (616)
+..+...... ....+.|+ +++.+|++++. ++.+++|+ ++++|++.+|++++ .|
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~----dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~~~d 302 (312)
T 4ery_A 227 LKTYTGHKNEKYCIFANFSVTGGKWIVSGSE----DNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALEND 302 (312)
T ss_dssp EEEECSSCCSSSCCCEEEECSSSCEEEECCT----TSCEEEEETTTCCEEEEECCCSSCEEEEEECSSSSEEEEEECTTT
T ss_pred EEEEEecCCceEEEEEEEEeCCCcEEEEECC----CCEEEEEECCCchhhhhhhccCCcEEEEeecCcCCceEEEEccCC
Confidence 8888643221 22333444 56667777776 44555555 66889999999886 68
Q ss_pred cceecccc
Q 048012 489 RKKSVDDF 496 (616)
Q Consensus 489 ~~~~~wd~ 496 (616)
+.+++|+.
T Consensus 303 ~~i~~W~~ 310 (312)
T 4ery_A 303 KTIKLWKS 310 (312)
T ss_dssp CCEEEEEC
T ss_pred ccEEEecC
Confidence 99999975
No 59
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.2e-33 Score=283.43 Aligned_cols=286 Identities=16% Similarity=0.195 Sum_probs=230.4
Q ss_pred CcceEEecCCcccEEEEEECCCCCEEEEEEcCCcEEEEeCCCCccccccceecCCCCCCceEEEEecCCCCeEEEEeCCC
Q 048012 139 MSNEIVLKGHTKIVSALAVDHSGSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSDRFLCVTGSA 218 (616)
Q Consensus 139 ~~~~~~l~~H~~~V~~v~~sp~g~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~s~d~ 218 (616)
......|.+|.+.|++++| +++.+|++|+.||.|+|||+.+.. .......+...|.+++|+|++.+|++++.++
T Consensus 8 ~~~~~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~-----~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 81 (313)
T 3odt_A 8 YQLSATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQW-----LGTVVYTGQGFLNSVCYDSEKELLLFGGKDT 81 (313)
T ss_dssp CEEEEEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSE-----EEEEEEECSSCEEEEEEETTTTEEEEEETTS
T ss_pred HHHHHHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCE-----EEEEeecCCccEEEEEECCCCCEEEEecCCC
Confidence 3455688999999999999 999999999999999999997642 2222334677899999999999999999999
Q ss_pred eEEEEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEEEECCCccccceEEeeeccCCC
Q 048012 219 QAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPG 298 (616)
Q Consensus 219 ~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~ 298 (616)
.|++|++...... ..+..+.+|...|.++.|. + .+|++++.|+.|++||. ......+ ..+
T Consensus 82 ~i~~~~~~~~~~~---------~~~~~~~~~~~~i~~~~~~--~-~~l~~~~~d~~i~~~d~--~~~~~~~------~~~ 141 (313)
T 3odt_A 82 MINGVPLFATSGE---------DPLYTLIGHQGNVCSLSFQ--D-GVVISGSWDKTAKVWKE--GSLVYNL------QAH 141 (313)
T ss_dssp CEEEEETTCCTTS---------CC-CEECCCSSCEEEEEEE--T-TEEEEEETTSEEEEEET--TEEEEEE------ECC
T ss_pred eEEEEEeeecCCC---------CcccchhhcccCEEEEEec--C-CEEEEEeCCCCEEEEcC--CcEEEec------ccC
Confidence 9999998754211 1234457899999999994 3 59999999999999992 2222222 134
Q ss_pred CccEEEEEECC-CCCeEEEEeCCCcEEEEeCCCCCCCCCceeeecC-CCCCeEEEEEcCCCCeEEEEecCCcEEEEeCCC
Q 048012 299 RVAVTTCAWDC-DGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKG-HSDDITALKFSSDGRILLSRSFDGSLKVWDLRK 376 (616)
Q Consensus 299 ~~~v~~~~~sp-~g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~-h~~~V~~l~~spdg~~l~s~s~Dg~v~lwd~~~ 376 (616)
...+.+++|.+ ++++|++++.||.|++||.. .....+.. |...|.+++|+|++. |++++.|+.|++||+++
T Consensus 142 ~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~------~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~ 214 (313)
T 3odt_A 142 NASVWDAKVVSFSENKFLTASADKTIKLWQND------KVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHT 214 (313)
T ss_dssp SSCEEEEEEEETTTTEEEEEETTSCEEEEETT------EEEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTT
T ss_pred CCceeEEEEccCCCCEEEEEECCCCEEEEecC------ceEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCc
Confidence 55899999988 99999999999999999954 34555555 899999999999998 99999999999999987
Q ss_pred CCCcceEecCCCCCCcceeEEECCCCCEEEEeeccccccCCCceEEEEeCCCCceEEEEecCCCCCeEEEEEcCCCCcEE
Q 048012 377 MKEPLKVFEDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREKLELVSRVGISPACSVVQCAWHPKLNQIF 456 (616)
Q Consensus 377 ~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~ 456 (616)
. .++..+.. +...|++++|+|++ .|++++ .||.|++||+.+++++..+.. +...|.+++|+|++. ++
T Consensus 215 ~-~~~~~~~~--~~~~i~~~~~~~~~-~l~~~~-------~dg~v~iwd~~~~~~~~~~~~-~~~~i~~~~~~~~~~-~~ 281 (313)
T 3odt_A 215 G-DVLRTYEG--HESFVYCIKLLPNG-DIVSCG-------EDRTVRIWSKENGSLKQVITL-PAISIWSVDCMSNGD-II 281 (313)
T ss_dssp C-CEEEEEEC--CSSCEEEEEECTTS-CEEEEE-------TTSEEEEECTTTCCEEEEEEC-SSSCEEEEEECTTSC-EE
T ss_pred h-hhhhhhhc--CCceEEEEEEecCC-CEEEEe-------cCCEEEEEECCCCceeEEEec-cCceEEEEEEccCCC-EE
Confidence 5 44555554 44569999999999 577888 899999999999999998875 567899999999976 55
Q ss_pred EEeccCCCCceEEEeccc
Q 048012 457 ATAGDKSQGGTHILYDPR 474 (616)
Q Consensus 457 ~~~~d~~~~~~~~v~~~~ 474 (616)
+++. ++.+.+|++.
T Consensus 282 ~~~~----dg~i~iw~~~ 295 (313)
T 3odt_A 282 VGSS----DNLVRIFSQE 295 (313)
T ss_dssp EEET----TSCEEEEESC
T ss_pred EEeC----CCcEEEEeCC
Confidence 6655 6678888765
No 60
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=7.5e-35 Score=293.74 Aligned_cols=259 Identities=15% Similarity=0.232 Sum_probs=200.0
Q ss_pred EEecCCcccEEEEEECCCCCEEEEEEcCCcEEEEeCCCCccccccceecCCCCCCceEEEEecC--CCCeEEEEeCCCeE
Q 048012 143 IVLKGHTKIVSALAVDHSGSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSP--TSDRFLCVTGSAQA 220 (616)
Q Consensus 143 ~~l~~H~~~V~~v~~sp~g~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp--~g~~l~~~s~d~~v 220 (616)
..+.+|.+.|++++|+|+|++||+|+.|++|+|||+...... .......|...|.+++|++ ++++|++++.|++|
T Consensus 7 ~~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~---~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v 83 (316)
T 3bg1_A 7 TVDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQI---LIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKV 83 (316)
T ss_dssp -------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEE---EEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCE
T ss_pred eecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcE---EEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEE
Confidence 367899999999999999999999999999999998764211 1222346788899999986 48999999999999
Q ss_pred EEEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCC-CCEEEEEeCCCCEEEEECCCccccceEEeeeccCCCC
Q 048012 221 KIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKT-KETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPGR 299 (616)
Q Consensus 221 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~-~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~ 299 (616)
+|||+...... ....+.+|...|++++|+|+. ..+|++|+.|++|++||+....... .......|.
T Consensus 84 ~iWd~~~~~~~----------~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~---~~~~~~~h~ 150 (316)
T 3bg1_A 84 IIWREENGTWE----------KSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWE---VKKINNAHT 150 (316)
T ss_dssp EEECCSSSCCC----------EEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEE---ECCBTTSSS
T ss_pred EEEECCCCcce----------EEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcc---eeeeecccc
Confidence 99998865321 122356899999999999973 3689999999999999997643211 111223566
Q ss_pred ccEEEEEECCC-----------------CCeEEEEeCCCcEEEEeCCCCCCCCCceeeecCCCCCeEEEEEcCCC----C
Q 048012 300 VAVTTCAWDCD-----------------GKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHSDDITALKFSSDG----R 358 (616)
Q Consensus 300 ~~v~~~~~sp~-----------------g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~spdg----~ 358 (616)
..|.+++|+|+ +++|++|+.|++|+|||++... ....+..+.+|...|.+|+|+|++ +
T Consensus 151 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~-~~~~~~~l~~h~~~V~~v~~sp~~~~~~~ 229 (316)
T 3bg1_A 151 IGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDG-QWKEEQKLEAHSDWVRDVAWAPSIGLPTS 229 (316)
T ss_dssp SCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTS-CEEEEECCBCCSSCEEEEECCCCSSCSCC
T ss_pred CCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCC-ccceeeecccCCCceEEEEecCCCCCCCc
Confidence 68899999997 4789999999999999997431 113556788999999999999986 8
Q ss_pred eEEEEecCCcEEEEeCCCCC---CcceEecCCCCCCcceeEEECCCCCEEEEeeccccccCCCceEEEEeCC
Q 048012 359 ILLSRSFDGSLKVWDLRKMK---EPLKVFEDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDRE 427 (616)
Q Consensus 359 ~l~s~s~Dg~v~lwd~~~~~---~~~~~~~~~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~ 427 (616)
+|++++.|++|+|||++... .....+.. +...|.+++|+|++++|++++ .|+.|+||+..
T Consensus 230 ~las~s~D~~v~iw~~~~~~~~~~~~~~~~~--~~~~v~~v~~sp~g~~las~~-------~D~~v~lw~~~ 292 (316)
T 3bg1_A 230 TIASCSQDGRVFIWTCDDASSNTWSPKLLHK--FNDVVWHVSWSITANILAVSG-------GDNKVTLWKES 292 (316)
T ss_dssp EEEEEETTCEEEEEECSSTTCCCCBCCEEEE--CSSCEEEEEECTTTCCEEEEE-------SSSCEEEEEEC
T ss_pred eEEEEcCCCeEEEEEccCccccchhhhhhhc--CCCcEEEEEEcCCCCEEEEEc-------CCCeEEEEEEC
Confidence 99999999999999997631 12233333 345699999999999999999 89999999975
No 61
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=1.1e-33 Score=311.54 Aligned_cols=319 Identities=18% Similarity=0.234 Sum_probs=241.2
Q ss_pred ceEEecCCcccEEEEEECCCCC-EEEEEEcCCcEEEEeCCCCccccccceecCCCCCC---ceEEEEecCC-CCeEEEEe
Q 048012 141 NEIVLKGHTKIVSALAVDHSGS-RVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGH---QVRNLSWSPT-SDRFLCVT 215 (616)
Q Consensus 141 ~~~~l~~H~~~V~~v~~sp~g~-~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~---~v~~l~~sp~-g~~l~~~s 215 (616)
....+.+|...|++++|+|++. +|++++.|+.|++||+.... .......|.. .|.+++|+|+ +++|++++
T Consensus 152 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~-----~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~ 226 (615)
T 1pgu_A 152 SLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFK-----FSASDRTHHKQGSFVRDVEFSPDSGEFVITVG 226 (615)
T ss_dssp EEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBE-----EEEEECSSSCTTCCEEEEEECSTTCCEEEEEE
T ss_pred cceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcc-----eeeeecccCCCCceEEEEEECCCCCCEEEEEe
Confidence 4557789999999999999998 89999999999999987642 1122234555 8999999999 99999999
Q ss_pred CCCeEEEEECCCCeeeeEeeCceeEeecccC-C---CcccceEEEEEcCCCCCEEEEEeCCCCEEEEECCCccccceEEe
Q 048012 216 GSAQAKIYDRDGLTLGEFVKGDMYIRDLKNT-K---GHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIK 291 (616)
Q Consensus 216 ~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~-~---~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~ 291 (616)
.++.|++||+...... ..+ . +|...|.+++|+ ++ .+|++++.|+.|++||+.+++....+..
T Consensus 227 ~dg~i~vwd~~~~~~~------------~~~~~~~~~~~~~v~~~~~~-~~-~~l~~~~~d~~i~~wd~~~~~~~~~~~~ 292 (615)
T 1pgu_A 227 SDRKISCFDGKSGEFL------------KYIEDDQEPVQGGIFALSWL-DS-QKFATVGADATIRVWDVTTSKCVQKWTL 292 (615)
T ss_dssp TTCCEEEEETTTCCEE------------EECCBTTBCCCSCEEEEEES-SS-SEEEEEETTSEEEEEETTTTEEEEEEEC
T ss_pred CCCeEEEEECCCCCEe------------EEecccccccCCceEEEEEc-CC-CEEEEEcCCCcEEEEECCCCcEEEEEcC
Confidence 9999999999866532 223 3 899999999999 65 6999999999999999988765544432
Q ss_pred eeccCCCCccEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCCCCCceeeecCCCCCe-----------------------
Q 048012 292 PKLARPGRVAVTTCAWDCDGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHSDDI----------------------- 348 (616)
Q Consensus 292 ~~~~~~~~~~v~~~~~sp~g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V----------------------- 348 (616)
.. ......+.++.|. ++++|++++.||.|++||+.++ ..+..+.+|...|
T Consensus 293 ~~--~~~~~~~~~~~~~-~~~~l~~~~~~g~i~~~d~~~~----~~~~~~~~~~~~v~~~~~~~l~~~~~dg~i~~w~~~ 365 (615)
T 1pgu_A 293 DK--QQLGNQQVGVVAT-GNGRIISLSLDGTLNFYELGHD----EVLKTISGHNKGITALTVNPLISGSYDGRIMEWSSS 365 (615)
T ss_dssp CT--TCGGGCEEEEEEE-ETTEEEEEETTSCEEEEETTEE----EEEEEECCCSSCEEEEETTTTEEEETTSCEEETTTT
T ss_pred CC--CcccCceeEEEeC-CCCeEEEEECCCCEEEEECCCC----cEEEEEeCCCCCEEEEEecCcEEECCCCeEEEEEch
Confidence 21 1223467888886 8999999999999999998864 3444444444444
Q ss_pred ----------EEEEEcCCCCeEEEEecCCcEEEEeCCCCC----------------------------------------
Q 048012 349 ----------TALKFSSDGRILLSRSFDGSLKVWDLRKMK---------------------------------------- 378 (616)
Q Consensus 349 ----------~~l~~spdg~~l~s~s~Dg~v~lwd~~~~~---------------------------------------- 378 (616)
.+++| +++.+|++++.|+.|++||+....
T Consensus 366 ~~~~~~~~~v~~~~~-~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 444 (615)
T 1pgu_A 366 SMHQDHSNLIVSLDN-SKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVR 444 (615)
T ss_dssp EEECCCCSCEEEEEC-CSTTCCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred hhcCcccCceEEEEE-CCCcEEEEEeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecc
Confidence 44444 224555555555555555543210
Q ss_pred ----------------------CcceE----------ecCCCCCCcceeEEECCCCCEEEEeeccccccCCCceEEEEeC
Q 048012 379 ----------------------EPLKV----------FEDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDR 426 (616)
Q Consensus 379 ----------------------~~~~~----------~~~~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~ 426 (616)
..+.. .....+...|++++|+|++++|++++ .||.|+|||+
T Consensus 445 ~~~~~~~~~~~~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-------~dg~i~iw~~ 517 (615)
T 1pgu_A 445 LNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGD-------VMGKILLYDL 517 (615)
T ss_dssp CSSCEEEEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEE-------TTSCEEEEET
T ss_pred cCCCceEEEEcCCEEEEeecCCCeEEEEECCCccccccccCCccCceEEEEECCCCCEEEEcC-------CCCeEEEeeC
Confidence 00000 11223556799999999999999999 8999999999
Q ss_pred CCCceEEEEecCCCCCeEEEEEcC----------CCCcEEEEeccCCCCceEEEec--------------------ccCC
Q 048012 427 EKLELVSRVGISPACSVVQCAWHP----------KLNQIFATAGDKSQGGTHILYD--------------------PRLS 476 (616)
Q Consensus 427 ~~~~~~~~~~~~~~~~v~~~~~~p----------~~~~l~~~~~d~~~~~~~~v~~--------------------~~~s 476 (616)
.+++++..+...|...|.+++|+| ++.+|++++.| +.+++|+ ++|+
T Consensus 518 ~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~d----g~i~iw~~~~~~~~~~~~~~h~~~v~~l~~s 593 (615)
T 1pgu_A 518 QSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLD----TNIFIYSVKRPMKIIKALNAHKDGVNNLLWE 593 (615)
T ss_dssp TTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETT----SCEEEEESSCTTCCEEETTSSTTCEEEEEEE
T ss_pred CCCcceeEeecCCCCceeEEEEcCccccccccccCCCEEEEEcCC----CcEEEEECCCCceechhhhcCccceEEEEEc
Confidence 999998887644778999999999 99999999884 4555554 6678
Q ss_pred CCCcEEEEecCCcceecccccC
Q 048012 477 ERGALVCVARAPRKKSVDDFEV 498 (616)
Q Consensus 477 ~~g~~l~s~~~d~~~~~wd~~~ 498 (616)
|+|. |++++.|+.+++|++..
T Consensus 594 ~~~~-l~s~~~d~~v~iw~~~~ 614 (615)
T 1pgu_A 594 TPST-LVSSGADACIKRWNVVL 614 (615)
T ss_dssp ETTE-EEEEETTSCEEEEEEC-
T ss_pred CCCC-eEEecCCceEEEEeeec
Confidence 8999 99999999999999854
No 62
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=1.3e-33 Score=296.01 Aligned_cols=293 Identities=16% Similarity=0.207 Sum_probs=226.6
Q ss_pred cCCcccEEEEEECCCCCEEEEEEcCCcEEEEeCCCCccccccceecCCCCCCceEEEEecCCCCeEEEEeCCCeEEEEEC
Q 048012 146 KGHTKIVSALAVDHSGSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSDRFLCVTGSAQAKIYDR 225 (616)
Q Consensus 146 ~~H~~~V~~v~~sp~g~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~s~d~~v~vwd~ 225 (616)
..| ..+....|++++++|++|+.|+.|+|||+.... .......|...|.+++|+|++++|++++.|+.|++||+
T Consensus 95 ~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-----~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~ 168 (420)
T 3vl1_A 95 KRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNL-----QREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSV 168 (420)
T ss_dssp CSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSCE-----EEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred ecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCcc-----eeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeC
Confidence 344 556666889999999999999999999987642 23344567888999999999999999999999999999
Q ss_pred CCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEEEECCCccccceEEeeeccC---------
Q 048012 226 DGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLAR--------- 296 (616)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~--------- 296 (616)
..... +..+.+|...|.+++|+|++ .+|++++.|++|++||+.+++....+.......
T Consensus 169 ~~~~~------------~~~~~~h~~~v~~~~~~~~~-~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~ 235 (420)
T 3vl1_A 169 KDGSN------------PRTLIGHRATVTDIAIIDRG-RNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALF 235 (420)
T ss_dssp TTCCC------------CEEEECCSSCEEEEEEETTT-TEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEE
T ss_pred CCCcC------------ceEEcCCCCcEEEEEEcCCC-CEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEe
Confidence 86653 33357899999999999987 599999999999999998876554432211000
Q ss_pred ---------CCCccEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCCCCCceeeecCCCCCeEEEEEcCCCC-eEEEEecC
Q 048012 297 ---------PGRVAVTTCAWDCDGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHSDDITALKFSSDGR-ILLSRSFD 366 (616)
Q Consensus 297 ---------~~~~~v~~~~~sp~g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~-~l~s~s~D 366 (616)
.+...+.+++|+|++++|++|+.||.|++||++++. ........|...|++++|+|++. +|++++.|
T Consensus 236 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~d 312 (420)
T 3vl1_A 236 VGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKE---QTIQLPSKFTCSCNSLTVDGNNANYIYAGYEN 312 (420)
T ss_dssp ECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCC---EEEEECCTTSSCEEEEEECSSCTTEEEEEETT
T ss_pred cCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCc---eeEEcccccCCCceeEEEeCCCCCEEEEEeCC
Confidence 011244555678999999999999999999998752 33444456889999999999999 99999999
Q ss_pred CcEEEEeCCCCCCcceEecCCCCCCcceeEEECCCCCEEEEeeccccccCCCceEEEEeCCCCce---------EEEEec
Q 048012 367 GSLKVWDLRKMKEPLKVFEDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREKLEL---------VSRVGI 437 (616)
Q Consensus 367 g~v~lwd~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~~~~---------~~~~~~ 437 (616)
|.|++||+++...++..+..+ +...++++.| +++++|++++ .||.|+||++..... ...+ .
T Consensus 313 g~i~vwd~~~~~~~~~~~~~~-~~~~v~~~~~-~~~~~l~s~~-------~d~~v~iw~~~~~~~~~~~~~~~~~~~~-~ 382 (420)
T 3vl1_A 313 GMLAQWDLRSPECPVGEFLIN-EGTPINNVYF-AAGALFVSSG-------FDTSIKLDIISDPESERPAIEFETPTFL-V 382 (420)
T ss_dssp SEEEEEETTCTTSCSEEEEES-TTSCEEEEEE-ETTEEEEEET-------TTEEEEEEEECCTTCCSCEECTTSCEEE-C
T ss_pred CeEEEEEcCCCcCchhhhhcc-CCCCceEEEe-CCCCEEEEec-------CCccEEEEeccCCCCCccceeccCccEE-c
Confidence 999999999877666666553 3345777755 5788999998 899999999877421 2222 2
Q ss_pred CCCCCeEEEEEcCCCC---cEEEEeccCCCCceEEEeccc
Q 048012 438 SPACSVVQCAWHPKLN---QIFATAGDKSQGGTHILYDPR 474 (616)
Q Consensus 438 ~~~~~v~~~~~~p~~~---~l~~~~~d~~~~~~~~v~~~~ 474 (616)
.+...|.+++|+|++. .|++++. .+.+.+|++.
T Consensus 383 ~~~~~v~~~~~s~~~~~~g~l~a~g~----~g~~~~~~~~ 418 (420)
T 3vl1_A 383 SNDDAVSQFCYVSDDESNGEVLEVGK----NNFCALYNLS 418 (420)
T ss_dssp CSSCCCCEEEEECCSSSSCEEEEEET----TTEEEEEESC
T ss_pred cCCcceEEEEEccCCCCcceEEEEcC----CceEEEEecc
Confidence 4567788899999887 6776665 5677777764
No 63
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=7.9e-35 Score=300.84 Aligned_cols=258 Identities=14% Similarity=0.150 Sum_probs=193.8
Q ss_pred EecCCcccEEEEEECCCCCEEEEEEcCCcEEEEeCCCCccccccceecCCCCCCceEEEEecCCCCeEEEEeCCCeEEEE
Q 048012 144 VLKGHTKIVSALAVDHSGSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSDRFLCVTGSAQAKIY 223 (616)
Q Consensus 144 ~l~~H~~~V~~v~~sp~g~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~s~d~~v~vw 223 (616)
.+..|...|++++|+|+|++||+|+.|+.|+|||+.+... ........|...|.+++|+|++++|++++.|+.|+||
T Consensus 6 ~~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~---~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vw 82 (377)
T 3dwl_C 6 VLHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGW---KHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVY 82 (377)
T ss_dssp EEEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEE---EECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC
T ss_pred eEecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCce---EEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEE
Confidence 4556788999999999999999999999999999976420 1112233577789999999999999999999999999
Q ss_pred ECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEEEECCCccccceEEeeeccCCCCccEE
Q 048012 224 DRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPGRVAVT 303 (616)
Q Consensus 224 d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~ 303 (616)
|+...... .....+.+|...|.+++|+|++ .+|++++.|++|++||+............ ...|...|.
T Consensus 83 d~~~~~~~---------~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~--~~~h~~~v~ 150 (377)
T 3dwl_C 83 EKRPDGTW---------KQTLVLLRLNRAATFVRWSPNE-DKFAVGSGARVISVCYFEQENDWWVSKHL--KRPLRSTIL 150 (377)
T ss_dssp ------CC---------CCEEECCCCSSCEEEEECCTTS-SCCEEEESSSCEEECCC-----CCCCEEE--CSSCCSCEE
T ss_pred EcCCCCce---------eeeeEecccCCceEEEEECCCC-CEEEEEecCCeEEEEEECCcccceeeeEe--ecccCCCeE
Confidence 99865400 1123357899999999999987 58999999999999999876531111111 112566899
Q ss_pred EEEECCCCCeEEEEeCCCcEEEEeCCCCCC--------------CCCceeeecCCCCCeEEEEEcCCCCeEEEEecCCcE
Q 048012 304 TCAWDCDGKCIAGGIGDGSIQVWNLKPGWG--------------SRPDIHVEKGHSDDITALKFSSDGRILLSRSFDGSL 369 (616)
Q Consensus 304 ~~~~sp~g~~l~~g~~dg~I~iwd~~~~~~--------------~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~v 369 (616)
+++|+|++++|++|+.||.|++||++.... ....+..+ .|...|++++|+|++++|++++.|++|
T Consensus 151 ~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i 229 (377)
T 3dwl_C 151 SLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDSSV 229 (377)
T ss_dssp EEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETTTEE
T ss_pred EEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCCCcE
Confidence 999999999999999999999999863210 11234445 899999999999999999999999999
Q ss_pred EEEeCCCCCCc---ceEecCCCCCCcceeEEECCCCCEEEEeeccccccCCCceEEEEeCC
Q 048012 370 KVWDLRKMKEP---LKVFEDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDRE 427 (616)
Q Consensus 370 ~lwd~~~~~~~---~~~~~~~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~ 427 (616)
+|||+++...+ +..+.. +...|.+++|+|++++|++++ .++.+ +|+..
T Consensus 230 ~iwd~~~~~~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~~~~-------~~~~~-~~~~~ 280 (377)
T 3dwl_C 230 TIAYPSAPEQPPRALITVKL--SQLPLRSLLWANESAIVAAGY-------NYSPI-LLQGN 280 (377)
T ss_dssp C-CEECSTTSCEEECCCEEC--SSSCEEEEEEEETTEEEEEES-------SSSEE-EECCC
T ss_pred EEEECCCCCCcceeeEeecC--CCCceEEEEEcCCCCEEEEEc-------CCcEE-EEEeC
Confidence 99999986552 334443 445699999999999999987 56655 67655
No 64
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=2.6e-34 Score=295.70 Aligned_cols=298 Identities=11% Similarity=0.099 Sum_probs=211.2
Q ss_pred cccEEEEEECCCCCEEEEEEcCC-------cEEEEeCCCCccccc----cce-ecCCCCCCceEEEEecCCCCeEEEEe-
Q 048012 149 TKIVSALAVDHSGSRVLSGSYDY-------TVRMYDFQGMNSRLQ----SFR-QLEPSEGHQVRNLSWSPTSDRFLCVT- 215 (616)
Q Consensus 149 ~~~V~~v~~sp~g~~lasgs~Dg-------~i~iwd~~~~~~~~~----~~~-~~~~~~~~~v~~l~~sp~g~~l~~~s- 215 (616)
.-+|+|++|+|+|++||+|+.|. .|+||++........ ... .....+...|.+++|+ ++.+++++
T Consensus 14 g~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~--~~~~~~g~~ 91 (365)
T 4h5i_A 14 GYPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDAS--KGIILVGCN 91 (365)
T ss_dssp SSCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEE--TTEEEEECC
T ss_pred CCCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeC--CCEEEEEEC
Confidence 45899999999999999998643 599999876432211 111 1223455567777664 55666654
Q ss_pred ----------CCCeEEEEECCCCee-eeEeeCceeEeecccCCCcccceEEEEEcCCCCCEE-EEEeCCCCEEEEECCCc
Q 048012 216 ----------GSAQAKIYDRDGLTL-GEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETI-LTSSEDGSLRIWDVNEF 283 (616)
Q Consensus 216 ----------~d~~v~vwd~~~~~~-~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l-~s~s~Dg~v~iwd~~~~ 283 (616)
.++.+++|++..... ..+.. .........+...+.+++|+|++..++ ++++.|++|+|||+.+.
T Consensus 92 ~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~ 167 (365)
T 4h5i_A 92 ENSTKITQGKGNKHLRKFKYDKVNDQLEFLT----SVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDL 167 (365)
T ss_dssp CCHHHHHHTSCCCCEEEEEEETTTTEEEEEE----EECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTT
T ss_pred CCccEEEEecCCCcEEEEEecCCCceEEEee----eeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCC
Confidence 467789998764321 11110 012223345566789999999986432 34557899999999987
Q ss_pred cccceEEeeeccCCCCccEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCCCCCceeeecCCCCCeEEEEEcCCCCeEEEE
Q 048012 284 KSQKQVIKPKLARPGRVAVTTCAWDCDGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHSDDITALKFSSDGRILLSR 363 (616)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~ 363 (616)
.....+. +...|.+++|+|+|++|++++.+ .+++|+..++ ..........|...|.+|+|+|++++|+++
T Consensus 168 ~~~~~~~-------~~~~V~~v~fspdg~~l~s~s~~-~~~~~~~~~~--~~~~~~~~~~~~~~v~~v~fspdg~~l~~~ 237 (365)
T 4h5i_A 168 TEKFEIE-------TRGEVKDLHFSTDGKVVAYITGS-SLEVISTVTG--SCIARKTDFDKNWSLSKINFIADDTVLIAA 237 (365)
T ss_dssp EEEEEEE-------CSSCCCEEEECTTSSEEEEECSS-CEEEEETTTC--CEEEEECCCCTTEEEEEEEEEETTEEEEEE
T ss_pred cEEEEeC-------CCCceEEEEEccCCceEEeccce-eEEEEEeccC--cceeeeecCCCCCCEEEEEEcCCCCEEEEE
Confidence 6544331 23369999999999999999855 5666666654 122234556788899999999999999999
Q ss_pred ecCC----cEEEEeCCCCCCcc-eEecCCCCCCcceeEEECCCCCEEEEeeccccccCCCceEEEEeCCCCceEEEEecC
Q 048012 364 SFDG----SLKVWDLRKMKEPL-KVFEDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREKLELVSRVGIS 438 (616)
Q Consensus 364 s~Dg----~v~lwd~~~~~~~~-~~~~~~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~~~~~~~~~~~ 438 (616)
+.|+ .+++|++....... .......+...|++++|+|||++|++|+ .|+.|+|||+.+++++..+...
T Consensus 238 s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs-------~D~~V~iwd~~~~~~~~~~~~g 310 (365)
T 4h5i_A 238 SLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLAS-------NDNSIALVKLKDLSMSKIFKQA 310 (365)
T ss_dssp EESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEE-------TTSCEEEEETTTTEEEEEETTS
T ss_pred ecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEc-------CCCEEEEEECCCCcEEEEecCc
Confidence 9887 68889987543221 1111223445699999999999999999 8999999999999999887555
Q ss_pred CCCCeEEEEEcCCCCcEEEEeccCCCCceEEEecc
Q 048012 439 PACSVVQCAWHPKLNQIFATAGDKSQGGTHILYDP 473 (616)
Q Consensus 439 ~~~~v~~~~~~p~~~~l~~~~~d~~~~~~~~v~~~ 473 (616)
|...|++|+|+|++++|++++. +++++||++
T Consensus 311 H~~~V~~v~fSpdg~~laS~S~----D~tvrvw~i 341 (365)
T 4h5i_A 311 HSFAITEVTISPDSTYVASVSA----ANTIHIIKL 341 (365)
T ss_dssp SSSCEEEEEECTTSCEEEEEET----TSEEEEEEC
T ss_pred ccCCEEEEEECCCCCEEEEEeC----CCeEEEEEc
Confidence 7788888888888777777665 566777765
No 65
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=1.7e-32 Score=290.36 Aligned_cols=307 Identities=20% Similarity=0.361 Sum_probs=247.2
Q ss_pred ceEEecCCcccE-EEEEECCCCCEEEEEEcCCcEEEEeCCCCccccccceecCCCCCCceEEEEecCCCCeEEEEeCCCe
Q 048012 141 NEIVLKGHTKIV-SALAVDHSGSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSDRFLCVTGSAQ 219 (616)
Q Consensus 141 ~~~~l~~H~~~V-~~v~~sp~g~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~s~d~~ 219 (616)
....+.+|.+.| +|+.+ +|++|++|+.||+|++||+.++. .......|...|.++.|+ +++|++++.|+.
T Consensus 110 ~~~~l~~h~~~v~~~~~~--~g~~l~sg~~dg~i~vwd~~~~~-----~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~ 180 (445)
T 2ovr_B 110 SPKVLKGHDDHVITCLQF--CGNRIVSGSDDNTLKVWSAVTGK-----CLRTLVGHTGGVWSSQMR--DNIIISGSTDRT 180 (445)
T ss_dssp CCEEEECSTTSCEEEEEE--ETTEEEEEETTSCEEEEETTTCC-----EEEECCCCSSCEEEEEEE--TTEEEEEETTSC
T ss_pred eeEEecccCCCcEEEEEE--cCCEEEEEECCCcEEEEECCCCc-----EEEEEcCCCCCEEEEEec--CCEEEEEeCCCe
Confidence 345788999875 66555 68999999999999999998653 222334677889999997 679999999999
Q ss_pred EEEEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEEEECCCccccceEEeeeccCCCC
Q 048012 220 AKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPGR 299 (616)
Q Consensus 220 v~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~ 299 (616)
|++||+..... +..+.+|...|.++.|++ ..|++|+.|++|++||+.+++....+. .|.
T Consensus 181 i~vwd~~~~~~------------~~~~~~h~~~v~~~~~~~---~~l~s~s~dg~i~~wd~~~~~~~~~~~------~~~ 239 (445)
T 2ovr_B 181 LKVWNAETGEC------------IHTLYGHTSTVRCMHLHE---KRVVSGSRDATLRVWDIETGQCLHVLM------GHV 239 (445)
T ss_dssp EEEEETTTTEE------------EEEECCCSSCEEEEEEET---TEEEEEETTSEEEEEESSSCCEEEEEE------CCS
T ss_pred EEEEECCcCcE------------EEEECCCCCcEEEEEecC---CEEEEEeCCCEEEEEECCCCcEEEEEc------CCc
Confidence 99999987754 233578999999999974 589999999999999998876544332 455
Q ss_pred ccEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCCCCCceeeecCCCCCeEEEEEcCCCCeEEEEecCCcEEEEeCCCCCC
Q 048012 300 VAVTTCAWDCDGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHSDDITALKFSSDGRILLSRSFDGSLKVWDLRKMKE 379 (616)
Q Consensus 300 ~~v~~~~~sp~g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~v~lwd~~~~~~ 379 (616)
..|.+++| ++++|++|+.||.|++||++++ ..+..+.+|...|.+++| ++.+|++++.|++|++||++++.
T Consensus 240 ~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~----~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~- 310 (445)
T 2ovr_B 240 AAVRCVQY--DGRRVVSGAYDFMVKVWDPETE----TCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGN- 310 (445)
T ss_dssp SCEEEEEE--CSSCEEEEETTSCEEEEEGGGT----EEEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCC-
T ss_pred ccEEEEEE--CCCEEEEEcCCCEEEEEECCCC----cEeEEecCCCCceEEEEE--CCCEEEEEeCCCeEEEEECCCCC-
Confidence 58999999 7899999999999999999876 577788899999999999 78999999999999999998754
Q ss_pred cceEecCCCCCCcceeEEECCCCCEEEEeeccccccCCCceEEEEeCCCCceEEEEec--CCCCCeEEEEEcCCCCcEEE
Q 048012 380 PLKVFEDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREKLELVSRVGI--SPACSVVQCAWHPKLNQIFA 457 (616)
Q Consensus 380 ~~~~~~~~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~~~~~~~~~~--~~~~~v~~~~~~p~~~~l~~ 457 (616)
.+..+..+ ...+.++.+ ++.+|++|+ .||.|++||+.+++.+..+.. .+...|.+++|+ ++.|++
T Consensus 311 ~~~~~~~~--~~~v~~~~~--~~~~l~~~~-------~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s 377 (445)
T 2ovr_B 311 CIHTLTGH--QSLTSGMEL--KDNILVSGN-------ADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVIT 377 (445)
T ss_dssp EEEEECCC--CSCEEEEEE--ETTEEEEEE-------TTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEE
T ss_pred EEEEEcCC--cccEEEEEE--eCCEEEEEe-------CCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEEC--CCEEEE
Confidence 45555543 344766666 577999999 899999999999999998864 256789999997 468888
Q ss_pred EeccC-------C-------------CCceEEEecccCCCCCcEEEEecCCcc----eecccccCC
Q 048012 458 TAGDK-------S-------------QGGTHILYDPRLSERGALVCVARAPRK----KSVDDFEVA 499 (616)
Q Consensus 458 ~~~d~-------~-------------~~~~~~v~~~~~s~~g~~l~s~~~d~~----~~~wd~~~~ 499 (616)
++.|+ . .++...+|.++|+|+|.+|++++.|+. +.+||+...
T Consensus 378 ~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~dg~~~~~l~v~df~~~ 443 (445)
T 2ovr_B 378 SSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDVD 443 (445)
T ss_dssp EETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCCC
T ss_pred EeCCCeEEEEECCCCceeeeeeccccCCCCceEEEEEecCCEEEEEEcccCCCCccEEEEEECCCC
Confidence 88754 0 122234555778999999999999997 999998653
No 66
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=2.4e-33 Score=308.79 Aligned_cols=315 Identities=15% Similarity=0.170 Sum_probs=254.5
Q ss_pred cceEEecCCccc-EEEEEECC--CCCEEEEEEcCCcEEEEeCCCCccc---cccceecCCCCCCceEEEEecCCCCeEEE
Q 048012 140 SNEIVLKGHTKI-VSALAVDH--SGSRVLSGSYDYTVRMYDFQGMNSR---LQSFRQLEPSEGHQVRNLSWSPTSDRFLC 213 (616)
Q Consensus 140 ~~~~~l~~H~~~-V~~v~~sp--~g~~lasgs~Dg~i~iwd~~~~~~~---~~~~~~~~~~~~~~v~~l~~sp~g~~l~~ 213 (616)
.....+.+|... |++++|+| ++++||+|+.||.|+|||+.++... ..........+...|.+++|+|++++|++
T Consensus 54 ~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 133 (615)
T 1pgu_A 54 PPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCV 133 (615)
T ss_dssp CSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEE
T ss_pred ccceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEE
Confidence 456688999999 99999999 9999999999999999998643000 01112222346778999999999999999
Q ss_pred EeCC----CeEEEEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEEEECCCccccceE
Q 048012 214 VTGS----AQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQV 289 (616)
Q Consensus 214 ~s~d----~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~~~ 289 (616)
++.+ +.|++||.. .. +..+.+|...|.+++|+|++..+|++++.|+.|++||+.+.+....+
T Consensus 134 ~~~~~~~~~~v~~~d~~-~~-------------~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~ 199 (615)
T 1pgu_A 134 VGEGRDNFGVFISWDSG-NS-------------LGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASD 199 (615)
T ss_dssp EECCSSCSEEEEETTTC-CE-------------EEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEE
T ss_pred eccCCCCccEEEEEECC-Cc-------------ceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeee
Confidence 9987 688888832 21 33467899999999999998669999999999999999876544433
Q ss_pred EeeeccCCCCc---cEEEEEECCC-CCeEEEEeCCCcEEEEeCCCCCCCCCceeee-c---CCCCCeEEEEEcCCCCeEE
Q 048012 290 IKPKLARPGRV---AVTTCAWDCD-GKCIAGGIGDGSIQVWNLKPGWGSRPDIHVE-K---GHSDDITALKFSSDGRILL 361 (616)
Q Consensus 290 ~~~~~~~~~~~---~v~~~~~sp~-g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~-~---~h~~~V~~l~~spdg~~l~ 361 (616)
..|.. .|.+++|+|+ +++|++++.||.|++||++++ ..+..+ . .|...|.+++|+ ++++|+
T Consensus 200 ------~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~----~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~ 268 (615)
T 1pgu_A 200 ------RTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSG----EFLKYIEDDQEPVQGGIFALSWL-DSQKFA 268 (615)
T ss_dssp ------CSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTC----CEEEECCBTTBCCCSCEEEEEES-SSSEEE
T ss_pred ------cccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCC----CEeEEecccccccCCceEEEEEc-CCCEEE
Confidence 23444 7999999999 999999999999999999876 456666 5 899999999999 999999
Q ss_pred EEecCCcEEEEeCCCCCCcceEecCC--CCCCcceeEEECCCCCEEEEeeccccccCCCceEEEEeCCCCceEEEEecCC
Q 048012 362 SRSFDGSLKVWDLRKMKEPLKVFEDL--PNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREKLELVSRVGISP 439 (616)
Q Consensus 362 s~s~Dg~v~lwd~~~~~~~~~~~~~~--~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~ 439 (616)
+++.|+.|++||+++.. .+..+... .....+.++.|+ ++.+|++++ .+|.|++||+.+++.+..+.. |
T Consensus 269 ~~~~d~~i~~wd~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~-------~~g~i~~~d~~~~~~~~~~~~-~ 338 (615)
T 1pgu_A 269 TVGADATIRVWDVTTSK-CVQKWTLDKQQLGNQQVGVVAT-GNGRIISLS-------LDGTLNFYELGHDEVLKTISG-H 338 (615)
T ss_dssp EEETTSEEEEEETTTTE-EEEEEECCTTCGGGCEEEEEEE-ETTEEEEEE-------TTSCEEEEETTEEEEEEEECC-C
T ss_pred EEcCCCcEEEEECCCCc-EEEEEcCCCCcccCceeEEEeC-CCCeEEEEE-------CCCCEEEEECCCCcEEEEEeC-C
Confidence 99999999999998643 34444433 123457788886 899999999 899999999999998888864 7
Q ss_pred CCCeEEEEEcCCCCcEEEEeccCCCCceEEEec--------------ccCCCCCcEEEEecCCcceecccccC
Q 048012 440 ACSVVQCAWHPKLNQIFATAGDKSQGGTHILYD--------------PRLSERGALVCVARAPRKKSVDDFEV 498 (616)
Q Consensus 440 ~~~v~~~~~~p~~~~l~~~~~d~~~~~~~~v~~--------------~~~s~~g~~l~s~~~d~~~~~wd~~~ 498 (616)
...|.+++| |+ |++++. ++.+.+|+ +++ +++.+|++++.++.+++|++..
T Consensus 339 ~~~v~~~~~-~~---l~~~~~----dg~i~~w~~~~~~~~~~~~v~~~~~-~~~~~l~~~~~d~~i~~~~~~~ 402 (615)
T 1pgu_A 339 NKGITALTV-NP---LISGSY----DGRIMEWSSSSMHQDHSNLIVSLDN-SKAQEYSSISWDDTLKVNGITK 402 (615)
T ss_dssp SSCEEEEET-TT---TEEEET----TSCEEETTTTEEECCCCSCEEEEEC-CSTTCCEEEETTTEEEETTEEE
T ss_pred CCCEEEEEe-cC---cEEECC----CCeEEEEEchhhcCcccCceEEEEE-CCCcEEEEEeCCCCEEEEEccc
Confidence 788999999 87 777776 66777776 346 5578889999999999999853
No 67
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=4.2e-33 Score=290.77 Aligned_cols=291 Identities=18% Similarity=0.279 Sum_probs=224.2
Q ss_pred EEecCCcccEEEEEECCCCCEEEEEEcCCcEEEEeCCCCccccccceecCCCCCCceEEEEecCCCCeEEEEeCCCeEEE
Q 048012 143 IVLKGHTKIVSALAVDHSGSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSDRFLCVTGSAQAKI 222 (616)
Q Consensus 143 ~~l~~H~~~V~~v~~sp~g~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~s~d~~v~v 222 (616)
+...+|...+.+..++.++..+++++.|+.|+||++.++.. .......+...|.+++|+|++.+|++++.++.|+|
T Consensus 85 ~~~~~~~~~~~~~~~~~s~~~l~~~~~d~~v~lw~~~~~~~----~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~i 160 (401)
T 4aez_A 85 LDAPGIIDDYYLNLLDWSNLNVVAVALERNVYVWNADSGSV----SALAETDESTYVASVKWSHDGSFLSVGLGNGLVDI 160 (401)
T ss_dssp EECTTCCCCTTCBCEEECTTSEEEEEETTEEEEEETTTCCE----EEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred eeCCCCcCCceEEEEeecCCCEEEEECCCeEEEeeCCCCcE----eEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEE
Confidence 34447776644433333446788899999999999987532 22233336778999999999999999999999999
Q ss_pred EECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEEEECCCccccceEEeeeccCCCCccE
Q 048012 223 YDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPGRVAV 302 (616)
Q Consensus 223 wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v 302 (616)
||+..... +..+.+|...|.+++|++ .+|++++.|+.|++||+.......... ..|...|
T Consensus 161 wd~~~~~~------------~~~~~~~~~~v~~~~~~~---~~l~~~~~dg~i~i~d~~~~~~~~~~~-----~~~~~~v 220 (401)
T 4aez_A 161 YDVESQTK------------LRTMAGHQARVGCLSWNR---HVLSSGSRSGAIHHHDVRIANHQIGTL-----QGHSSEV 220 (401)
T ss_dssp EETTTCCE------------EEEECCCSSCEEEEEEET---TEEEEEETTSEEEEEETTSSSCEEEEE-----ECCSSCE
T ss_pred EECcCCeE------------EEEecCCCCceEEEEECC---CEEEEEcCCCCEEEEecccCcceeeEE-----cCCCCCe
Confidence 99987653 233568999999999954 599999999999999998543322222 2455589
Q ss_pred EEEEECCCCCeEEEEeCCCcEEEEeCCCCCCCCCceeeecCCCCCeEEEEEcCCCC-eEEEEe--cCCcEEEEeCCCCCC
Q 048012 303 TTCAWDCDGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHSDDITALKFSSDGR-ILLSRS--FDGSLKVWDLRKMKE 379 (616)
Q Consensus 303 ~~~~~sp~g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~-~l~s~s--~Dg~v~lwd~~~~~~ 379 (616)
.+++|+|++++|++|+.||.|++||++++ ..+..+..|...|.+++|+|++. +|++++ .|+.|++||++++.
T Consensus 221 ~~~~~~~~~~~l~s~~~d~~v~iwd~~~~----~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~- 295 (401)
T 4aez_A 221 CGLAWRSDGLQLASGGNDNVVQIWDARSS----IPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGA- 295 (401)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEETTCS----SEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCC-
T ss_pred eEEEEcCCCCEEEEEeCCCeEEEccCCCC----CccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCC-
Confidence 99999999999999999999999999975 56777889999999999999765 555554 69999999998754
Q ss_pred cceEecCCCCCCcceeEEECCCCCEEEEeeccccccCCCceEEEEeCCCCceEEEEec-CCCCCeEEEEEcCCCCcEEEE
Q 048012 380 PLKVFEDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREKLELVSRVGI-SPACSVVQCAWHPKLNQIFAT 458 (616)
Q Consensus 380 ~~~~~~~~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~~v~~~~~~p~~~~l~~~ 458 (616)
++..+. +...+++++|+|++++|++++ +..+|.|+|||+.+++....... .|...|.+++|+|++.+|+++
T Consensus 296 ~~~~~~---~~~~v~~~~~s~~~~~l~~~~-----g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~ 367 (401)
T 4aez_A 296 RVNTVD---AGSQVTSLIWSPHSKEIMSTH-----GFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTA 367 (401)
T ss_dssp EEEEEE---CSSCEEEEEECSSSSEEEEEE-----CTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEE
T ss_pred EEEEEe---CCCcEEEEEECCCCCeEEEEe-----ecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECCCCCEEEEE
Confidence 444443 345699999999999999943 11699999999998766655432 356778888888887777777
Q ss_pred eccCCCCceEEEeccc
Q 048012 459 AGDKSQGGTHILYDPR 474 (616)
Q Consensus 459 ~~d~~~~~~~~v~~~~ 474 (616)
+. ++.+.+|++.
T Consensus 368 ~~----dg~i~iw~~~ 379 (401)
T 4aez_A 368 AS----DENLKFWRVY 379 (401)
T ss_dssp CT----TSEEEEEECC
T ss_pred eC----CCcEEEEECC
Confidence 65 5677777765
No 68
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.4e-33 Score=289.18 Aligned_cols=267 Identities=14% Similarity=0.268 Sum_probs=216.3
Q ss_pred EEecCCcccEEEEEECCCCCEEEEEEcCCcEEEEeCCCCccccccceecCCCCCCceEEEEecCC--CCeEEEEeCCCeE
Q 048012 143 IVLKGHTKIVSALAVDHSGSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPT--SDRFLCVTGSAQA 220 (616)
Q Consensus 143 ~~l~~H~~~V~~v~~sp~g~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~--g~~l~~~s~d~~v 220 (616)
..+.+|...|++++|+|++++||+|+.||.|+||++..... ........|...|.+++|+++ +.+|++++.|+.|
T Consensus 5 ~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~---~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v 81 (379)
T 3jrp_A 5 VIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETH---KLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKV 81 (379)
T ss_dssp CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEE---EEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCE
T ss_pred EEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcc---eeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEE
Confidence 46889999999999999999999999999999999874321 122233457788999999987 9999999999999
Q ss_pred EEEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCC-CCEEEEEeCCCCEEEEECCCccccceEEeeeccCCCC
Q 048012 221 KIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKT-KETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPGR 299 (616)
Q Consensus 221 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~-~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~ 299 (616)
+|||+...... .+..+.+|...|.+++|+|+. ..+|++++.|+.|++||+........... ..+.
T Consensus 82 ~iwd~~~~~~~----------~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~----~~~~ 147 (379)
T 3jrp_A 82 LIWKEENGRWS----------QIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIII----DAHA 147 (379)
T ss_dssp EEEEEETTEEE----------EEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEE----ECCT
T ss_pred EEEEcCCCcee----------EeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEe----cCCC
Confidence 99999876521 233356799999999999982 36999999999999999987644333322 2455
Q ss_pred ccEEEEEECC-------------CCCeEEEEeCCCcEEEEeCCCCCCCCCceeeecCCCCCeEEEEEcCC---CCeEEEE
Q 048012 300 VAVTTCAWDC-------------DGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHSDDITALKFSSD---GRILLSR 363 (616)
Q Consensus 300 ~~v~~~~~sp-------------~g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~spd---g~~l~s~ 363 (616)
..|.+++|+| ++.+|++|+.||.|++||++.+.........+.+|...|.+++|+|+ +++|+++
T Consensus 148 ~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~ 227 (379)
T 3jrp_A 148 IGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASV 227 (379)
T ss_dssp TCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEE
T ss_pred CceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEE
Confidence 5899999999 69999999999999999998763223355677899999999999999 8999999
Q ss_pred ecCCcEEEEeCCCCCCcc--eEecCCCCCCcceeEEECCCCCEEEEeeccccccCCCceEEEEeCCCCceEE
Q 048012 364 SFDGSLKVWDLRKMKEPL--KVFEDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREKLELVS 433 (616)
Q Consensus 364 s~Dg~v~lwd~~~~~~~~--~~~~~~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~~~~~~ 433 (616)
+.||.|+|||++...... ..+....+...|++++|+|++++|++++ .||.|+||++.......
T Consensus 228 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-------~dg~i~iw~~~~~~~~~ 292 (379)
T 3jrp_A 228 SQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSG-------GDNKVTLWKENLEGKWE 292 (379)
T ss_dssp ETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEE-------SSSSEEEEEEEETTEEE
T ss_pred eCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEec-------CCCcEEEEeCCCCCccc
Confidence 999999999998754322 2333334566799999999999999999 89999999988654433
No 69
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=1.2e-32 Score=279.68 Aligned_cols=287 Identities=17% Similarity=0.236 Sum_probs=219.4
Q ss_pred ecCCCCCCceEEEEecCC-CCeEEEEeCCCeEEEEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEE
Q 048012 190 QLEPSEGHQVRNLSWSPT-SDRFLCVTGSAQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILT 268 (616)
Q Consensus 190 ~~~~~~~~~v~~l~~sp~-g~~l~~~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s 268 (616)
....+|...|++|+|+|+ +++|++++.|++|+|||+....... ......+.+|...|.+++|+|++ .+|++
T Consensus 32 ~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~-------~~~~~~l~~h~~~V~~~~~s~dg-~~l~s 103 (340)
T 4aow_A 32 GTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNY-------GIPQRALRGHSHFVSDVVISSDG-QFALS 103 (340)
T ss_dssp EEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCS-------EEEEEEECCCSSCEEEEEECTTS-SEEEE
T ss_pred EEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCccc-------ceeeEEEeCCCCCEEEEEECCCC-CEEEE
Confidence 334578889999999998 6799999999999999987643211 12244568999999999999987 59999
Q ss_pred EeCCCCEEEEECCCccccceEEeeeccCCCCccEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCCCCCceeeecCCCCCe
Q 048012 269 SSEDGSLRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWDCDGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHSDDI 348 (616)
Q Consensus 269 ~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V 348 (616)
++.|+.|++|+........... .+...+..+.+++++++|++|+.|+.+++||+... ........+|...|
T Consensus 104 ~~~d~~i~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~---~~~~~~~~~~~~~v 174 (340)
T 4aow_A 104 GSWDGTLRLWDLTTGTTTRRFV------GHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGV---CKYTVQDESHSEWV 174 (340)
T ss_dssp EETTSEEEEEETTTTEEEEEEE------CCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSC---EEEEECSSSCSSCE
T ss_pred EcccccceEEeecccceeeeec------CCCCceeEEEEeecCccceeecCCCeEEEEEeCCC---ceEEEEeccccCcc
Confidence 9999999999998754433322 22336788899999999999999999999998763 23455667899999
Q ss_pred EEEEEcCCC--CeEEEEecCCcEEEEeCCCCCCcceEecCCCCCCcceeEEECCCCCEEEEeeccccccCCCceEEEEeC
Q 048012 349 TALKFSSDG--RILLSRSFDGSLKVWDLRKMKEPLKVFEDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDR 426 (616)
Q Consensus 349 ~~l~~spdg--~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~ 426 (616)
..++|++++ .++++++.|++|++||+++.. .+..+.. +...|++++|+|++++|++|+ .||.|+|||+
T Consensus 175 ~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~-~~~~~~~--h~~~v~~~~~s~~~~~l~s~s-------~Dg~i~iwd~ 244 (340)
T 4aow_A 175 SCVRFSPNSSNPIIVSCGWDKLVKVWNLANCK-LKTNHIG--HTGYLNTVTVSPDGSLCASGG-------KDGQAMLWDL 244 (340)
T ss_dssp EEEEECSCSSSCEEEEEETTSCEEEEETTTTE-EEEEECC--CSSCEEEEEECTTSSEEEEEE-------TTCEEEEEET
T ss_pred cceEEccCCCCcEEEEEcCCCEEEEEECCCCc-eeeEecC--CCCcEEEEEECCCCCEEEEEe-------CCCeEEEEEe
Confidence 999999865 578899999999999998743 4455544 445699999999999999999 8999999999
Q ss_pred CCCceEEEEecCCCCCeEEEEEcCCCCcEEEEeccCCCCceEEEecccCCCCCcEEEEecCCcce---ecccccCCceee
Q 048012 427 EKLELVSRVGISPACSVVQCAWHPKLNQIFATAGDKSQGGTHILYDPRLSERGALVCVARAPRKK---SVDDFEVAPVIH 503 (616)
Q Consensus 427 ~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~~~~~~~v~~~~~s~~g~~l~s~~~d~~~---~~wd~~~~~~~~ 503 (616)
.+.+.+..+.. ...|..+.|+|++ .+++++. ++.+.+|++. .+..+......... ....-.+..+.|
T Consensus 245 ~~~~~~~~~~~--~~~v~~~~~~~~~-~~~~~~~----d~~i~iwd~~---~~~~~~~~~~~~~~~~~~~h~~~v~~l~~ 314 (340)
T 4aow_A 245 NEGKHLYTLDG--GDIINALCFSPNR-YWLCAAT----GPSIKIWDLE---GKIIVDELKQEVISTSSKAEPPQCTSLAW 314 (340)
T ss_dssp TTTEEEEEEEC--SSCEEEEEECSSS-SEEEEEE----TTEEEEEETT---TTEEEEEECCC-------CCCCCEEEEEE
T ss_pred ccCceeeeecC--CceEEeeecCCCC-ceeeccC----CCEEEEEECC---CCeEEEeccccceeeeccCCCCCEEEEEE
Confidence 99999988864 4679999999985 4555655 7789999985 23333332221111 111123445778
Q ss_pred CCCCCCcccC
Q 048012 504 NPHALPLFRD 513 (616)
Q Consensus 504 ~p~~~~l~~~ 513 (616)
+|++..|+..
T Consensus 315 s~dg~~l~sg 324 (340)
T 4aow_A 315 SADGQTLFAG 324 (340)
T ss_dssp CTTSSEEEEE
T ss_pred CCCCCEEEEE
Confidence 8988777765
No 70
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.2e-34 Score=305.56 Aligned_cols=296 Identities=11% Similarity=0.056 Sum_probs=214.5
Q ss_pred EEecCCcccEEEEEECCC------CCEEEEEEcCCcEEEEeCCCCccc------cccceecCCCCCCceEEEEecCCCCe
Q 048012 143 IVLKGHTKIVSALAVDHS------GSRVLSGSYDYTVRMYDFQGMNSR------LQSFRQLEPSEGHQVRNLSWSPTSDR 210 (616)
Q Consensus 143 ~~l~~H~~~V~~v~~sp~------g~~lasgs~Dg~i~iwd~~~~~~~------~~~~~~~~~~~~~~v~~l~~sp~g~~ 210 (616)
.++.+|.+.|++|+|+|+ +.+||+|+.||+|+|||+...... ..........|...|.+++|+++ ..
T Consensus 201 ~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~-~~ 279 (524)
T 2j04_B 201 QTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSP-TT 279 (524)
T ss_dssp EEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSS-SE
T ss_pred EEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCC-Ce
Confidence 457788999999999997 579999999999999999764321 00011123356778999999986 48
Q ss_pred EEEEeCCCeEEEEECCCCeeeeEeeCceeEeecccCCCcccceEEE--EEcCCCCCEEEEEeCCCCEEEEECCCccccce
Q 048012 211 FLCVTGSAQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCG--EWHPKTKETILTSSEDGSLRIWDVNEFKSQKQ 288 (616)
Q Consensus 211 l~~~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~--~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~~ 288 (616)
|++|+.|++|++||+..... ....+.+|...|+++ .|++++..+|++|+.|++|+|||+++.+....
T Consensus 280 lasgs~DgtV~lWD~~~~~~-----------~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~ 348 (524)
T 2j04_B 280 VVCGFKNGFVAEFDLTDPEV-----------PSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKT 348 (524)
T ss_dssp EEEEETTSEEEEEETTBCSS-----------CSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCE
T ss_pred EEEEeCCCEEEEEECCCCCC-----------ceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccc
Confidence 99999999999999985421 122357899999999 56776546999999999999999988766554
Q ss_pred EEeeeccCCCCccEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCCCCCceeeecCCCCCeEEEEEcCCCCeEEEEecCCc
Q 048012 289 VIKPKLARPGRVAVTTCAWDCDGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHSDDITALKFSSDGRILLSRSFDGS 368 (616)
Q Consensus 289 ~~~~~~~~~~~~~v~~~~~sp~g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~ 368 (616)
+..... ...|.+++|+|+++.|++++.|++|+|||++.+ ..+..+.+|...|++|+|+|+|++|++|+.|++
T Consensus 349 ~~~~~~----~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~----~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dgt 420 (524)
T 2j04_B 349 TVSRFR----GSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAA----FAVHPLVSRETTITAIGVSRLHPMVLAGSADGS 420 (524)
T ss_dssp EEEECS----CCSCCCEEEETTTTEEEEECSSSEEEEEETTCT----TCCEEEEECSSCEEEEECCSSCCBCEEEETTTE
T ss_pred cccccc----cCcccceEeCCCcCeEEEeCCCCcEEEEECccc----ccceeeecCCCceEEEEeCCCCCeEEEEECCCE
Confidence 432211 114788999999999999999999999999976 455667789999999999999999999999999
Q ss_pred EEEEeCCCCCCcceEecCC---CCCCcceeEEECCCCCEEEEeeccccccCCCceEEEEeCC-CCceEEEEecCCCCCeE
Q 048012 369 LKVWDLRKMKEPLKVFEDL---PNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDRE-KLELVSRVGISPACSVV 444 (616)
Q Consensus 369 v~lwd~~~~~~~~~~~~~~---~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~-~~~~~~~~~~~~~~~v~ 444 (616)
|+|||+... .+..+... .....+.+++|+|++..+.. . .+ +.+|+.. ++.++..+. .|...|.
T Consensus 421 v~lwd~~~~--~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~~-~-------~~--~~~~~~~~~g~~~~~l~-gh~~~V~ 487 (524)
T 2j04_B 421 LIITNAARR--LLHGIKNSSATQKSLRLWKWDYSIKDDKYRI-D-------SS--YEVYPLTVNDVSKAKID-AHGINIT 487 (524)
T ss_dssp EECCBSCSS--TTTCC------CCCCEEEECBCCSSSCEEEE-C-------CC--CCCCC--------------CCCSCC
T ss_pred EEEEechHh--hccccccCccceeeeEEEEeccCCCCCeEEc-c-------CC--ceecccccCCcceeeec-CCCceEE
Confidence 999998642 22221110 11124678999999986532 2 22 3344432 455666665 3678899
Q ss_pred EEEEcCCCC---cEEEEeccCCCCceEEEecccC
Q 048012 445 QCAWHPKLN---QIFATAGDKSQGGTHILYDPRL 475 (616)
Q Consensus 445 ~~~~~p~~~---~l~~~~~d~~~~~~~~v~~~~~ 475 (616)
+|+|+|+++ .|++++. ++.++||.+..
T Consensus 488 ~Vafsp~~~~~~~lAsg~~----~g~vrlw~l~~ 517 (524)
T 2j04_B 488 CTKWNETSAGGKCYAFSNS----AGLLTLEYLSL 517 (524)
T ss_dssp CEEECCSTTTTTEEEEECT----TSEEEEEECSC
T ss_pred EEECCCCCCccHHHHhhcc----CceEEEEEccc
Confidence 999999964 5555554 79999999864
No 71
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=2.8e-32 Score=286.32 Aligned_cols=299 Identities=16% Similarity=0.267 Sum_probs=230.5
Q ss_pred CCCcceEEecCC----cccEEEEEECCCCCEEEEEEcCCcEEEEeCCCCccccccceecCCCCCCceEEEEecCCCCeEE
Q 048012 137 IPMSNEIVLKGH----TKIVSALAVDHSGSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSDRFL 212 (616)
Q Consensus 137 ~p~~~~~~l~~H----~~~V~~v~~sp~g~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~ 212 (616)
+|...+.+|..- .-.++.|+|+++ ++||+|. |++|+|||+.++... ..+ ....|...|++|+|+|+|++|+
T Consensus 89 i~~~p~~~l~ap~~~~d~y~~~l~wS~~-n~lAvgl-d~tV~lWd~~tg~~~-~~~--~~~~~~~~V~sv~fspdg~~la 163 (420)
T 4gga_A 89 IPSLPDRILDAPEIRNDYYLNLVDWSSG-NVLAVAL-DNSVYLWSASSGDIL-QLL--QMEQPGEYISSVAWIKEGNYLA 163 (420)
T ss_dssp CCSSCSEEEECTTCCCCTTCBCEEECTT-SEEEEEE-TTEEEEEETTTCCEE-EEE--ECCSTTCCEEEEEECTTSSEEE
T ss_pred cCCCCceEEECCCCcccccceeEEECCC-CEEEEEe-CCEEEEEECCCCCEE-EEE--EecCCCCcEEEEEECCCCCEEE
Confidence 444444555432 234678999975 5777765 999999999875311 111 1234566799999999999999
Q ss_pred EEeCCCeEEEEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEEEECCCccccceEEee
Q 048012 213 CVTGSAQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKP 292 (616)
Q Consensus 213 ~~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~ 292 (616)
+|+.|+.|+|||+..... +..+.+|...+.++.|++ .+|++|+.|+.+++||...........
T Consensus 164 sgs~Dg~v~iWd~~~~~~------------~~~~~~h~~~v~~~s~~~---~~l~sgs~d~~i~~~d~~~~~~~~~~~-- 226 (420)
T 4gga_A 164 VGTSSAEVQLWDVQQQKR------------LRNMTSHSARVGSLSWNS---YILSSGSRSGHIHHHDVRVAEHHVATL-- 226 (420)
T ss_dssp EEETTSCEEEEETTTTEE------------EEEECCCSSCEEEEEEET---TEEEEEETTSEEEEEETTSSSCEEEEE--
T ss_pred EEECCCeEEEEEcCCCcE------------EEEEeCCCCceEEEeeCC---CEEEEEeCCCceeEeeecccceeeEEe--
Confidence 999999999999987764 334678999999999875 599999999999999988654332222
Q ss_pred eccCCCCccEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCCCCCceeeecCCCCCeEEEEEcCCCC-eEEEE--ecCCcE
Q 048012 293 KLARPGRVAVTTCAWDCDGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHSDDITALKFSSDGR-ILLSR--SFDGSL 369 (616)
Q Consensus 293 ~~~~~~~~~v~~~~~sp~g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~-~l~s~--s~Dg~v 369 (616)
..|...+..+.|++++++|++++.||.|++|++..+......+.....|...|.+++|+|++. +|+++ +.|++|
T Consensus 227 ---~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I 303 (420)
T 4gga_A 227 ---SGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHI 303 (420)
T ss_dssp ---ECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEE
T ss_pred ---cccccceeeeeecCCCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEE
Confidence 245558999999999999999999999999999887444455677888999999999999654 55543 479999
Q ss_pred EEEeCCCCCCcceEecCCCCCCcceeEEECCCCCEEEEeeccccccCCCceEEEEeCCCCceEEEEecCCCCCeEEEEEc
Q 048012 370 KVWDLRKMKEPLKVFEDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREKLELVSRVGISPACSVVQCAWH 449 (616)
Q Consensus 370 ~lwd~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~ 449 (616)
+|||++++. +...+.. ...+.++.|+++++.|++++ +..|+.|+|||+.+++++..+.. |...|++++|+
T Consensus 304 ~iwd~~t~~-~~~~~~~---~~~v~~~~~~~~~~~lv~~s-----g~~d~~I~iwd~~~~~~v~~l~g-H~~~V~~l~~s 373 (420)
T 4gga_A 304 RIWNVCSGA-CLSAVDA---HSQVCSILWSPHYKELISGH-----GFAQNQLVIWKYPTMAKVAELKG-HTSRVLSLTMS 373 (420)
T ss_dssp EEEETTTTE-EEEEEEC---SSCEEEEEEETTTTEEEEEE-----CTTTCCEEEEETTTCCEEEEECC-CSSCEEEEEEC
T ss_pred EEEeCCccc-cceeecc---ccceeeeeecCCCCeEEEEE-----ecCCCEEEEEECCCCcEEEEEcC-CCCCEEEEEEc
Confidence 999999754 3444432 34589999999999998875 22689999999999999999874 77889999998
Q ss_pred CCCCcEEEEeccCCCCceEEEeccc
Q 048012 450 PKLNQIFATAGDKSQGGTHILYDPR 474 (616)
Q Consensus 450 p~~~~l~~~~~d~~~~~~~~v~~~~ 474 (616)
|++.+|++++. +++++||++.
T Consensus 374 pdg~~l~S~s~----D~tvriWdv~ 394 (420)
T 4gga_A 374 PDGATVASAAA----DETLRLWRCF 394 (420)
T ss_dssp TTSSCEEEEET----TTEEEEECCS
T ss_pred CCCCEEEEEec----CCeEEEEECC
Confidence 88777777765 5566666653
No 72
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=6.9e-33 Score=315.89 Aligned_cols=324 Identities=15% Similarity=0.187 Sum_probs=256.5
Q ss_pred eEEecCCcccEEEEEECCCCCEEEEEEcCCcEEEEeCCCCccccccceecCCCCCCceEEEEecCCCCeEEEEeCCCeEE
Q 048012 142 EIVLKGHTKIVSALAVDHSGSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSDRFLCVTGSAQAK 221 (616)
Q Consensus 142 ~~~l~~H~~~V~~v~~sp~g~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~s~d~~v~ 221 (616)
...+.+|...|++++|+|++++|++|+.||.|+|||+.++.. ......|...|.+++|+|++.+|++++.|+.|+
T Consensus 48 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~-----~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~ 122 (814)
T 3mkq_A 48 VRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEK-----VVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVK 122 (814)
T ss_dssp EEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCE-----EEEEECCSSCEEEEEECSSSSEEEEEETTSEEE
T ss_pred EEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcE-----EEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEE
Confidence 456789999999999999999999999999999999987531 122235777899999999999999999999999
Q ss_pred EEECCCC-eeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEEEECCCccccceEEeeeccCCCCc
Q 048012 222 IYDRDGL-TLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPGRV 300 (616)
Q Consensus 222 vwd~~~~-~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~ 300 (616)
+|++.+. .. ...+.+|...|.+++|+|.+..+|++++.|++|++||+.+......+.. .+..
T Consensus 123 vw~~~~~~~~------------~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~-----~~~~ 185 (814)
T 3mkq_A 123 LWNWENNWAL------------EQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTT-----GQER 185 (814)
T ss_dssp EEEGGGTSEE------------EEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEEC-----CCTT
T ss_pred EEECCCCceE------------EEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEec-----CCCC
Confidence 9998865 22 2235688999999999994446999999999999999987655444332 2224
Q ss_pred cEEEEEECC--CCCeEEEEeCCCcEEEEeCCCCCCCCCceeeecCCCCCeEEEEEcCCCCeEEEEecCCcEEEEeCCCCC
Q 048012 301 AVTTCAWDC--DGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHSDDITALKFSSDGRILLSRSFDGSLKVWDLRKMK 378 (616)
Q Consensus 301 ~v~~~~~sp--~g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~v~lwd~~~~~ 378 (616)
.+.+++|+| ++.+|++|+.||.|++||++++ ..+..+.+|...|.+++|+|++++|++++.||.|++||+.+.
T Consensus 186 ~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~----~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~- 260 (814)
T 3mkq_A 186 GVNYVDYYPLPDKPYMITASDDLTIKIWDYQTK----SCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTY- 260 (814)
T ss_dssp CCCEEEECCSTTCCEEEEECTTSEEEEEETTTT----EEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTC-
T ss_pred CEEEEEEEECCCCCEEEEEeCCCEEEEEECCCC----cEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCC-
Confidence 789999999 9999999999999999999876 567788899999999999999999999999999999999864
Q ss_pred CcceEecCCCCCCcceeEEECCCCC--EEEEeeccccccCCCceEEEEeCCCCceEEEEe--------------------
Q 048012 379 EPLKVFEDLPNNYAQTNVAFSPDEQ--LFLTGTSVERESTTGGLLCFYDREKLELVSRVG-------------------- 436 (616)
Q Consensus 379 ~~~~~~~~~~~~~~v~~v~fspdg~--~l~~gs~~~~~~~~dg~i~iwd~~~~~~~~~~~-------------------- 436 (616)
..+..+.. +...+.+++|+|++. +++++. ++.+.+|++........+.
T Consensus 261 ~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 330 (814)
T 3mkq_A 261 KVEKTLNV--GLERSWCIATHPTGRKNYIASGF--------DNGFTVLSLGNDEPTLSLDPVGKLVWSGGKNAAASDIFT 330 (814)
T ss_dssp SEEEEECC--SSSSEEEEEECTTCGGGEEEEEE--------TTEEEEEECSCCSCCEEECSSSEEEEECCTTSCTTCEEE
T ss_pred cEEEEeec--CCCcEEEEEEccCCCceEEEEEe--------CCCEEEEEcCCCCceeEECCCCCEEEECcccccceeeee
Confidence 34555544 335699999999987 456554 6667888876543222111
Q ss_pred ----------------------cCCCCCeEEEEEcCCCCcEEEEeccCCCCceEEEec--------------ccCCCCCc
Q 048012 437 ----------------------ISPACSVVQCAWHPKLNQIFATAGDKSQGGTHILYD--------------PRLSERGA 480 (616)
Q Consensus 437 ----------------------~~~~~~v~~~~~~p~~~~l~~~~~d~~~~~~~~v~~--------------~~~s~~g~ 480 (616)
..+...+.+++|+|++..|++++ ++.+.+|+ ++|+|+|.
T Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~-----~~~~~i~~~~~~~~~~~~~i~~~~~spdg~ 405 (814)
T 3mkq_A 331 AVIRGNEEVEQDEPLSLQTKELGSVDVFPQSLAHSPNGRFVTVVG-----DGEYVIYTALAWRNKAFGKCQDFVWGPDSN 405 (814)
T ss_dssp EECCSCCCCCSSSCBCCCCEEECCCSSCCSEEEECTTSSEEEEEE-----TTEEEEEETTTTEEEEEEECSEEEECTTSS
T ss_pred eecccccccccCccceeeeecCCCCccCCceeEECCCCCEEEEec-----CCEEEEEECccccccCCCceEEEEEeCCCC
Confidence 11233578899999999888877 34566665 67889999
Q ss_pred EEEEecCCcceecccc------cCCceeeCCCC
Q 048012 481 LVCVARAPRKKSVDDF------EVAPVIHNPHA 507 (616)
Q Consensus 481 ~l~s~~~d~~~~~wd~------~~~~~~~~p~~ 507 (616)
+|+++..++.+++|+. .+..+.|+|++
T Consensus 406 ~la~~~~~g~v~l~~~~~~~~~~v~~~~~s~dg 438 (814)
T 3mkq_A 406 SYALIDETGQIKYYKNFKEVTSWSVPMHSAIDR 438 (814)
T ss_dssp CEEEECTTCCEEEEETTEECTTCCCCCSSCCCE
T ss_pred eEEEEeCCCcEEEEECCCCccceEEcCCcCccc
Confidence 9999999999999975 22346677776
No 73
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.5e-33 Score=322.40 Aligned_cols=336 Identities=14% Similarity=0.120 Sum_probs=233.0
Q ss_pred CcccEEEEEECCCCCEEEEEEcCCcEEEEeCCCCccccccce--------ecCCCCCCceEEEEecCC-CCeEEEEeCCC
Q 048012 148 HTKIVSALAVDHSGSRVLSGSYDYTVRMYDFQGMNSRLQSFR--------QLEPSEGHQVRNLSWSPT-SDRFLCVTGSA 218 (616)
Q Consensus 148 H~~~V~~v~~sp~g~~lasgs~Dg~i~iwd~~~~~~~~~~~~--------~~~~~~~~~v~~l~~sp~-g~~l~~~s~d~ 218 (616)
|...|++++|+|++++|++|+.||+|++||+.+.... .+. .....|...|.+++|+|+ +..|++++.++
T Consensus 97 ~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~--~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg 174 (902)
T 2oaj_A 97 VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLS--SFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYV 174 (902)
T ss_dssp CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEE--EEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSC
T ss_pred CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccc--cceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCCC
Confidence 6789999999999999999999999999999875321 111 123457778999999996 47899999999
Q ss_pred eEEEEECCCCeeeeEeeCceeE------eecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEEEECCCccccceEEee
Q 048012 219 QAKIYDRDGLTLGEFVKGDMYI------RDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKP 292 (616)
Q Consensus 219 ~v~vwd~~~~~~~~~~~~~~~~------~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~ 292 (616)
.| |||+............... ........|...|++++|+|++ .+|++++.|++|+|||+.+++........
T Consensus 175 ~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg-~~lasgs~Dg~i~lWd~~~g~~~~~r~l~ 252 (902)
T 2oaj_A 175 TL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNS-LHIITIHEDNSLVFWDANSGHMIMARTVF 252 (902)
T ss_dssp EE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTS-SEEEEEETTCCEEEEETTTCCEEEEECSS
T ss_pred cE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCC-CEEEEEECCCeEEEEECCCCcEEEEEeec
Confidence 99 9999877653322111000 0001234567889999999987 69999999999999999876543210000
Q ss_pred -eccC-----------CCCccEEEEEEC----CCC-Ce------------------------------------------
Q 048012 293 -KLAR-----------PGRVAVTTCAWD----CDG-KC------------------------------------------ 313 (616)
Q Consensus 293 -~~~~-----------~~~~~v~~~~~s----p~g-~~------------------------------------------ 313 (616)
...+ .+...|++++|+ |++ .+
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~ 332 (902)
T 2oaj_A 253 ETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPK 332 (902)
T ss_dssp CSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCS
T ss_pred ccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccchhhhhhhhcCcc
Confidence 0000 122245666662 221 23
Q ss_pred ----------------------------------EEEEeCCCcEEEEeCCCCCCCCC-----------------------
Q 048012 314 ----------------------------------IAGGIGDGSIQVWNLKPGWGSRP----------------------- 336 (616)
Q Consensus 314 ----------------------------------l~~g~~dg~I~iwd~~~~~~~~~----------------------- 336 (616)
+++++.||.|++||+.++.....
T Consensus 333 ~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~ 412 (902)
T 2oaj_A 333 QMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASV 412 (902)
T ss_dssp EEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEE
T ss_pred ceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCcccccCCCeeEEEEEEc
Confidence 34444456666666644310000
Q ss_pred --------------ceeeecCCCCCeEEEEEcCCCCeEEEEecCCcEEEEeCCCCCCcc-eEec-------CCCCCCcce
Q 048012 337 --------------DIHVEKGHSDDITALKFSSDGRILLSRSFDGSLKVWDLRKMKEPL-KVFE-------DLPNNYAQT 394 (616)
Q Consensus 337 --------------~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~v~lwd~~~~~~~~-~~~~-------~~~~~~~v~ 394 (616)
....+.+|...+.+|+|+|++++|++++.|++|++||+..+.... ..+. ...+...|+
T Consensus 413 ~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~ 492 (902)
T 2oaj_A 413 PNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVD 492 (902)
T ss_dssp EHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEE
T ss_pred CHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEecCCCcEEEEECCCccccCCceEEeechhhcCCCCCCcee
Confidence 000123445555666778999999999999999999998753110 1111 013456799
Q ss_pred eEEECCCCCEEEEeeccccccCCCceEEEEeCCCCc--------------------------------------------
Q 048012 395 NVAFSPDEQLFLTGTSVERESTTGGLLCFYDREKLE-------------------------------------------- 430 (616)
Q Consensus 395 ~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~~~-------------------------------------------- 430 (616)
+|+|+||+++||+|+ .||+|+|||+.+++
T Consensus 493 svafspdg~~LAsgs-------~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 565 (902)
T 2oaj_A 493 KISFAAETLELAVSI-------ETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGF 565 (902)
T ss_dssp EEEEETTTTEEEEEE-------TTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEE
T ss_pred EEEecCCCCeEEEEe-------cCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCcc
Confidence 999999999999999 89999999987663
Q ss_pred -eEEEEecCCCCCeEEEEEcCCCCcEEEEeccCC---------------------CCceEEEecccCC-----CCC---c
Q 048012 431 -LVSRVGISPACSVVQCAWHPKLNQIFATAGDKS---------------------QGGTHILYDPRLS-----ERG---A 480 (616)
Q Consensus 431 -~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~---------------------~~~~~~v~~~~~s-----~~g---~ 480 (616)
++..+.. |.+.|++++|+|++ +|++++.|+. .+|...|++++|| ||| .
T Consensus 566 ~~~~~l~~-h~~~V~svafSpdG-~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~ 643 (902)
T 2oaj_A 566 MPSTAVHA-NKGKTSAINNSNIG-FVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQSACVTCIEFVIMEYGDDGYSSI 643 (902)
T ss_dssp EEEEEECC-CSCSEEEEEECBTS-EEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSCCCCEEEEEEEEEECTTSSSEEE
T ss_pred ceeEEEEc-CCCcEEEEEecCCc-EEEEEeCCCcEEEEECCCCeEEEEeehhHhccccccceEEEEEEEEecCCCCCcce
Confidence 3455543 77899999999999 8888888651 1344446667888 885 8
Q ss_pred EEEEecCCcceecccc
Q 048012 481 LVCVARAPRKKSVDDF 496 (616)
Q Consensus 481 ~l~s~~~d~~~~~wd~ 496 (616)
+|++++.|+++++||+
T Consensus 644 ~l~sgs~D~tv~~wd~ 659 (902)
T 2oaj_A 644 LMVCGTDMGEVITYKI 659 (902)
T ss_dssp EEEEEETTSEEEEEEE
T ss_pred EEEEEecCCcEEEEEE
Confidence 9999999999999998
No 74
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=4.2e-33 Score=311.86 Aligned_cols=287 Identities=17% Similarity=0.233 Sum_probs=218.2
Q ss_pred CCCCCCceEEEEecCCC-CeEEEEeCCCeEEEEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEe
Q 048012 192 EPSEGHQVRNLSWSPTS-DRFLCVTGSAQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSS 270 (616)
Q Consensus 192 ~~~~~~~v~~l~~sp~g-~~l~~~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s 270 (616)
...|...|++|+|++++ ++|++++.|+.|+||++...... +......+.+|...|.+++|+|++ .+|++|+
T Consensus 378 l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~-------~~~~~~~~~~h~~~v~~v~~s~~g-~~l~sgs 449 (694)
T 3dm0_A 378 MRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKA-------YGVAQRRLTGHSHFVEDVVLSSDG-QFALSGS 449 (694)
T ss_dssp EECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTC-------SCEEEEEEECCSSCEEEEEECTTS-SEEEEEE
T ss_pred cccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcc-------cccccceecCCCCcEEEEEECCCC-CEEEEEe
Confidence 34688889999999875 68999999999999998753210 001133467999999999999987 5999999
Q ss_pred CCCCEEEEECCCccccceEEeeeccCCCCccEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCCCCCceeeecCCCCCeEE
Q 048012 271 EDGSLRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWDCDGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHSDDITA 350 (616)
Q Consensus 271 ~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~ 350 (616)
.|++|+|||+.++.....+ .+|...|.+++|+|++++|++|+.|++|+|||+.... .........+|...|.+
T Consensus 450 ~Dg~v~vwd~~~~~~~~~~------~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~-~~~~~~~~~~h~~~v~~ 522 (694)
T 3dm0_A 450 WDGELRLWDLAAGVSTRRF------VGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGEC-KYTISEGGEGHRDWVSC 522 (694)
T ss_dssp TTSEEEEEETTTTEEEEEE------ECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCE-EEEECSSTTSCSSCEEE
T ss_pred CCCcEEEEECCCCcceeEE------eCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCc-ceeeccCCCCCCCcEEE
Confidence 9999999999887654433 2466689999999999999999999999999986531 00111223578999999
Q ss_pred EEEcCCC--CeEEEEecCCcEEEEeCCCCCCcceEecCCCCCCcceeEEECCCCCEEEEeeccccccCCCceEEEEeCCC
Q 048012 351 LKFSSDG--RILLSRSFDGSLKVWDLRKMKEPLKVFEDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREK 428 (616)
Q Consensus 351 l~~spdg--~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~ 428 (616)
++|+|++ .+|++++.|++|+|||+++. .....+.. |...|++++|+|++++|++|+ .||.|+|||+.+
T Consensus 523 ~~~~~~~~~~~l~s~s~d~~v~vwd~~~~-~~~~~~~~--h~~~v~~v~~spdg~~l~sg~-------~Dg~i~iwd~~~ 592 (694)
T 3dm0_A 523 VRFSPNTLQPTIVSASWDKTVKVWNLSNC-KLRSTLAG--HTGYVSTVAVSPDGSLCASGG-------KDGVVLLWDLAE 592 (694)
T ss_dssp EEECSCSSSCEEEEEETTSCEEEEETTTC-CEEEEECC--CSSCEEEEEECTTSSEEEEEE-------TTSBCEEEETTT
T ss_pred EEEeCCCCcceEEEEeCCCeEEEEECCCC-cEEEEEcC--CCCCEEEEEEeCCCCEEEEEe-------CCCeEEEEECCC
Confidence 9999987 58999999999999999864 34555554 445699999999999999999 899999999999
Q ss_pred CceEEEEecCCCCCeEEEEEcCCCCcEEEEeccCCCCceEEEecccCCCCCcEEEEecCCcceec-------------cc
Q 048012 429 LELVSRVGISPACSVVQCAWHPKLNQIFATAGDKSQGGTHILYDPRLSERGALVCVARAPRKKSV-------------DD 495 (616)
Q Consensus 429 ~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~~~~~~~v~~~~~s~~g~~l~s~~~d~~~~~-------------wd 495 (616)
++++..+. +...|.+++|+|++..|+++. ++.++||++.. +..+..-..+..... .-
T Consensus 593 ~~~~~~~~--~~~~v~~~~~sp~~~~l~~~~-----~~~i~iwd~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 662 (694)
T 3dm0_A 593 GKKLYSLE--ANSVIHALCFSPNRYWLCAAT-----EHGIKIWDLES---KSIVEDLKVDLKAEAEKADNSGPAATKRKV 662 (694)
T ss_dssp TEEEECCB--CSSCEEEEEECSSSSEEEEEE-----TTEEEEEETTT---TEEEEEECCCCC----------------CC
T ss_pred CceEEEec--CCCcEEEEEEcCCCcEEEEEc-----CCCEEEEECCC---CCChhhhccccccccccccccccccCCcee
Confidence 99887764 456799999999977666655 45699999863 444433222111100 00
Q ss_pred ccCCceeeCCCCCCcccC
Q 048012 496 FEVAPVIHNPHALPLFRD 513 (616)
Q Consensus 496 ~~~~~~~~~p~~~~l~~~ 513 (616)
+....+.|+|++..|++.
T Consensus 663 ~~~~~l~~spdg~~l~sg 680 (694)
T 3dm0_A 663 IYCTSLNWSADGSTLFSG 680 (694)
T ss_dssp CCEEEEEECTTSSEEEEE
T ss_pred EEeeeEEEcCCCCEEEEE
Confidence 112346789998888765
No 75
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=2.2e-32 Score=273.08 Aligned_cols=255 Identities=14% Similarity=0.226 Sum_probs=199.7
Q ss_pred CCCCCCceEEEEecCCCCeEEEEeCCCeEEEEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCC-CCCEEEEEe
Q 048012 192 EPSEGHQVRNLSWSPTSDRFLCVTGSAQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPK-TKETILTSS 270 (616)
Q Consensus 192 ~~~~~~~v~~l~~sp~g~~l~~~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~-~~~~l~s~s 270 (616)
...|...|.+++|+|+|++|++++.|+.|+||++.+... ..+..+.+|...|++++|++. .+.+|++|+
T Consensus 5 ~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~----------~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s 74 (297)
T 2pm7_B 5 ANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETH----------KLIDTLTGHEGPVWRVDWAHPKFGTILASCS 74 (297)
T ss_dssp CCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCB----------CCCEEECCCSSCEEEEEECCGGGCSEEEEEE
T ss_pred ccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCc----------EEEEEEccccCCeEEEEecCCCcCCEEEEEc
Confidence 346778899999999999999999999999999875321 124456899999999999864 246999999
Q ss_pred CCCCEEEEECCCccccceEEeeeccCCCCccEEEEEECCC--CCeEEEEeCCCcEEEEeCCCCCCCCCceeeecCCCCCe
Q 048012 271 EDGSLRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWDCD--GKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHSDDI 348 (616)
Q Consensus 271 ~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~--g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V 348 (616)
.|++|+|||+.++....... ...|...|.+++|+|+ |.+|++|+.||+|++||++.+. ......+.+|...|
T Consensus 75 ~D~~v~iWd~~~~~~~~~~~----~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~--~~~~~~~~~h~~~v 148 (297)
T 2pm7_B 75 YDGKVMIWKEENGRWSQIAV----HAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENG--TTSPIIIDAHAIGV 148 (297)
T ss_dssp TTTEEEEEEBSSSCBCCCEE----ECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSS--CBCCEEEECCSSCE
T ss_pred CCCEEEEEEcCCCceEEEEE----eecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCC--ceeeeeeecccCcc
Confidence 99999999998754221111 1245568999999997 8999999999999999998651 12245678999999
Q ss_pred EEEEEcCC-------------CCeEEEEecCCcEEEEeCCCCCC---cceEecCCCCCCcceeEEECCCC---CEEEEee
Q 048012 349 TALKFSSD-------------GRILLSRSFDGSLKVWDLRKMKE---PLKVFEDLPNNYAQTNVAFSPDE---QLFLTGT 409 (616)
Q Consensus 349 ~~l~~spd-------------g~~l~s~s~Dg~v~lwd~~~~~~---~~~~~~~~~~~~~v~~v~fspdg---~~l~~gs 409 (616)
.+++|+|+ +++|++++.|++|+|||+++... ....+.. |...|.+++|+|++ .+|++++
T Consensus 149 ~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~--H~~~V~~v~~sp~~~~~~~las~s 226 (297)
T 2pm7_B 149 NSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEG--HSDWVRDVAWSPTVLLRSYMASVS 226 (297)
T ss_dssp EEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECC--CSSCEEEEEECCCCSSSEEEEEEE
T ss_pred ceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecC--CCCceEEEEECCCCCCceEEEEEE
Confidence 99999997 57999999999999999986543 2334444 45669999999995 8999999
Q ss_pred ccccccCCCceEEEEeCCCCc--eEEEEe--cCCCCCeEEEEEcCCCCcEEEEeccCCCCceEEEecccC
Q 048012 410 SVERESTTGGLLCFYDREKLE--LVSRVG--ISPACSVVQCAWHPKLNQIFATAGDKSQGGTHILYDPRL 475 (616)
Q Consensus 410 ~~~~~~~~dg~i~iwd~~~~~--~~~~~~--~~~~~~v~~~~~~p~~~~l~~~~~d~~~~~~~~v~~~~~ 475 (616)
.|+.|+|||+.+.. ....+. ..+...|.+++|+|++++|++++. ++.++||++..
T Consensus 227 -------~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~----D~~v~lw~~~~ 285 (297)
T 2pm7_B 227 -------QDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGG----DNKVTLWKENL 285 (297)
T ss_dssp -------TTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEET----TSCEEEEEECT
T ss_pred -------CCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcC----CCcEEEEEECC
Confidence 89999999987753 122221 234567888889988888888887 66788887653
No 76
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=100.00 E-value=1e-32 Score=280.25 Aligned_cols=316 Identities=15% Similarity=0.153 Sum_probs=220.9
Q ss_pred EEecCCcccEEEEEECCCCCEEEEEEcCCcEEEEeCCCCccccccceecCCCCCCceEEEEecC--CCCeEEEEeCCCeE
Q 048012 143 IVLKGHTKIVSALAVDHSGSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSP--TSDRFLCVTGSAQA 220 (616)
Q Consensus 143 ~~l~~H~~~V~~v~~sp~g~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp--~g~~l~~~s~d~~v 220 (616)
..+.+|.+.|++|+|+|++++||+|+.||.|+|||+.......... .....|...|.+++|+| ++.+|++++.|+.|
T Consensus 5 ~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v 83 (351)
T 3f3f_A 5 PFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELS-DSWRAHDSSIVAIDWASPEYGRIIASASYDKTV 83 (351)
T ss_dssp CEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEE-EEEECCSSCEEEEEECCGGGCSEEEEEETTSCE
T ss_pred ccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceec-ceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeE
Confidence 3678999999999999999999999999999999998654322222 22335778899999999 69999999999999
Q ss_pred EEEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCC--CCCEEEEEeCCCCEEEEECCCccccceEEeee-----
Q 048012 221 KIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPK--TKETILTSSEDGSLRIWDVNEFKSQKQVIKPK----- 293 (616)
Q Consensus 221 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~--~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~----- 293 (616)
+|||+........ ......+..+.+|...|.+++|+|+ + .+|++++.|+.|++||+.+.+....+....
T Consensus 84 ~vwd~~~~~~~~~---~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~ 159 (351)
T 3f3f_A 84 KLWEEDPDQEECS---GRRWNKLCTLNDSKGSLYSVKFAPAHLG-LKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVL 159 (351)
T ss_dssp EEEEECTTSCTTS---SCSEEEEEEECCCSSCEEEEEECCGGGC-SEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESC
T ss_pred EEEecCCCccccc---ccCcceeeeecccCCceeEEEEcCCCCC-cEEEEecCCCcEEEecCCChHHhcccccccccccc
Confidence 9999986532100 0001123445789999999999998 5 699999999999999998876554432211
Q ss_pred --ccCCCCccEEEEEECCC---CCeEEEEeCCCcEEEEeCCCCCCCCCceeeecCCCCCeEEEEEcCCC----CeEEEEe
Q 048012 294 --LARPGRVAVTTCAWDCD---GKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHSDDITALKFSSDG----RILLSRS 364 (616)
Q Consensus 294 --~~~~~~~~v~~~~~sp~---g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~spdg----~~l~s~s 364 (616)
....+...+.+++|+|+ +.+|++++.++.+.+|+...+ ....+..+.+|...|++++|+|++ ++|++++
T Consensus 160 ~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~ 237 (351)
T 3f3f_A 160 SIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDG--KLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGC 237 (351)
T ss_dssp SCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTS--CEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEE
T ss_pred ccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCC--ceeeeeecCCCCcceeEEEECCCCCCcceEEEEEc
Confidence 11245567999999997 999999999999988887765 223467788999999999999998 8999999
Q ss_pred cCCcEEEEeCCCCCCcceEecCCCCCCcceeEEECCCCCEEEEeeccccccCCCceEEEEeCCCCceEEEEecCCCCCeE
Q 048012 365 FDGSLKVWDLRKMKEPLKVFEDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREKLELVSRVGISPACSVV 444 (616)
Q Consensus 365 ~Dg~v~lwd~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~ 444 (616)
.||+|++||++.......... ....+....+++....+..+.. .......+.+|+....+++..+.. |...|.
T Consensus 238 ~dg~i~iwd~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~ 310 (351)
T 3f3f_A 238 KDGRIRIFKITEKLSPLASEE---SLTNSNMFDNSADVDMDAQGRS---DSNTEEKAELQSNLQVELLSEHDD-HNGEVW 310 (351)
T ss_dssp TTSCEEEEEEEECC---------------------------------------------CCSEEEEEEEEECT-TSSCEE
T ss_pred CCCeEEEEeCCCCcCccccCC---cccceeccCCCccccccccccc---ccccceeeeecccccccEEEEEec-ccccEE
Confidence 999999999987543332211 1122334444444444444431 111345667777777777777764 677899
Q ss_pred EEEEcCCCCcEEEEeccCCCCceEEEecccCC
Q 048012 445 QCAWHPKLNQIFATAGDKSQGGTHILYDPRLS 476 (616)
Q Consensus 445 ~~~~~p~~~~l~~~~~d~~~~~~~~v~~~~~s 476 (616)
+++|+|++++|++++. ++.++||++...
T Consensus 311 ~~~~s~~~~~l~s~~~----dg~v~iw~~~~~ 338 (351)
T 3f3f_A 311 SVSWNLTGTILSSAGD----DGKVRLWKATYS 338 (351)
T ss_dssp EEEECSSSCCEEEEET----TSCEEEEEECTT
T ss_pred EEEEcCCCCEEEEecC----CCcEEEEecCcC
Confidence 9999999999998887 778999998753
No 77
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=2.7e-32 Score=290.17 Aligned_cols=290 Identities=17% Similarity=0.275 Sum_probs=231.2
Q ss_pred cceEEecCCcccE-EEEEECCCCCEEEEEEcCCcEEEEeCCCCccccccceecCCCCCCceEEEEecCCCCeEEEEeCCC
Q 048012 140 SNEIVLKGHTKIV-SALAVDHSGSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSDRFLCVTGSA 218 (616)
Q Consensus 140 ~~~~~l~~H~~~V-~~v~~sp~g~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~s~d~ 218 (616)
.....+.+|...| +|+.| ++.+|++|+.||+|++||+.++. .......|...|.+++|++++ +|++++.|+
T Consensus 112 ~~~~~l~~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~-----~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg 183 (464)
T 3v7d_B 112 PQRTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKK-----FLLQLSGHDGGVWALKYAHGG-ILVSGSTDR 183 (464)
T ss_dssp CEEEEEECCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTTTE-----EEEEECCCSSCEEEEEECSTT-EEEEEETTS
T ss_pred cceEEEcCCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCCCc-----EEEEEeCCCcCEEEEEEcCCC-EEEEEeCCC
Confidence 3456889998874 67776 56799999999999999998753 222234678899999999988 999999999
Q ss_pred eEEEEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCC-CCCEEEEEeCCCCEEEEECCCccccceEEe------
Q 048012 219 QAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPK-TKETILTSSEDGSLRIWDVNEFKSQKQVIK------ 291 (616)
Q Consensus 219 ~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~-~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~------ 291 (616)
.|++||+..... +..+.+|...|.+++|++. +..+|++++.|++|++||+.+.........
T Consensus 184 ~i~vwd~~~~~~------------~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~ 251 (464)
T 3v7d_B 184 TVRVWDIKKGCC------------THVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPL 251 (464)
T ss_dssp CEEEEETTTTEE------------EEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSE
T ss_pred CEEEEECCCCcE------------EEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcce
Confidence 999999987754 3335789999999999852 336899999999999999987653321100
Q ss_pred -----------eeccCCCCccEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCCCCCceeeecCCCCCeEEEEEcCCCCeE
Q 048012 292 -----------PKLARPGRVAVTTCAWDCDGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHSDDITALKFSSDGRIL 360 (616)
Q Consensus 292 -----------~~~~~~~~~~v~~~~~sp~g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l 360 (616)
.....+|...|.++ ++++++|++|+.||.|++||++++ ..+..+.+|...|.+++|+|++++|
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~----~~~~~~~~~~~~v~~~~~~~~~~~l 325 (464)
T 3v7d_B 252 VFHTPEENPYFVGVLRGHMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQM----KCLYILSGHTDRIYSTIYDHERKRC 325 (464)
T ss_dssp EESCGGGCTTEEEEECCCSSCEEEE--EEETTEEEEEETTSCEEEEETTTT----EEEEEECCCSSCEEEEEEETTTTEE
T ss_pred EeeccCCCeEEEEEccCccceEEEE--cCCCCEEEEEeCCCeEEEEECCCC----cEEEEecCCCCCEEEEEEcCCCCEE
Confidence 11123455567766 577999999999999999999876 6778888999999999999999999
Q ss_pred EEEecCCcEEEEeCCCCCCcceEecCCCCCCcceeEEECCCCCEEEEeeccccccCCCceEEEEeCCCCceEEEEecCCC
Q 048012 361 LSRSFDGSLKVWDLRKMKEPLKVFEDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREKLELVSRVGISPA 440 (616)
Q Consensus 361 ~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 440 (616)
++++.||+|++||++++ .++..+.. +...|.+++|+ +.+|++++ .||.|++||+.++....... +.
T Consensus 326 ~sg~~dg~i~vwd~~~~-~~~~~~~~--h~~~v~~~~~~--~~~l~s~s-------~dg~v~vwd~~~~~~~~~~~--~~ 391 (464)
T 3v7d_B 326 ISASMDTTIRIWDLENG-ELMYTLQG--HTALVGLLRLS--DKFLVSAA-------ADGSIRGWDANDYSRKFSYH--HT 391 (464)
T ss_dssp EEEETTSCEEEEETTTT-EEEEEECC--CSSCEEEEEEC--SSEEEEEE-------TTSEEEEEETTTCCEEEEEE--CT
T ss_pred EEEeCCCcEEEEECCCC-cEEEEEeC--CCCcEEEEEEc--CCEEEEEe-------CCCcEEEEECCCCceeeeec--CC
Confidence 99999999999999874 44556655 44569999997 58999999 89999999999988776664 45
Q ss_pred CCeEEEEEcCCCCcEEEEeccCCCCceEEEeccc
Q 048012 441 CSVVQCAWHPKLNQIFATAGDKSQGGTHILYDPR 474 (616)
Q Consensus 441 ~~v~~~~~~p~~~~l~~~~~d~~~~~~~~v~~~~ 474 (616)
..+..++|++++..|++++ ++.+.+|++.
T Consensus 392 ~~~~~~~~~~~~~~l~~~~-----dg~i~iwd~~ 420 (464)
T 3v7d_B 392 NLSAITTFYVSDNILVSGS-----ENQFNIYNLR 420 (464)
T ss_dssp TCCCEEEEEECSSEEEEEE-----TTEEEEEETT
T ss_pred CCccEEEEEeCCCEEEEec-----CCeEEEEECC
Confidence 6678889999998888776 4577888764
No 78
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=1e-32 Score=285.83 Aligned_cols=268 Identities=18% Similarity=0.238 Sum_probs=212.8
Q ss_pred CCCCceEEEEecCCC-CeEEEEeCCCeEEEEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCC
Q 048012 194 SEGHQVRNLSWSPTS-DRFLCVTGSAQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSED 272 (616)
Q Consensus 194 ~~~~~v~~l~~sp~g-~~l~~~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~D 272 (616)
.|...|.+++|+|++ ++|++++.|+.|+|||+.+..... .....+|...|.+++|+|++..+|++++.|
T Consensus 71 ~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~----------~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d 140 (383)
T 3ei3_B 71 PFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTS----------FIQGMGPGDAITGMKFNQFNTNQLFVSSIR 140 (383)
T ss_dssp CCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEE----------EECCCSTTCBEEEEEEETTEEEEEEEEETT
T ss_pred CCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccce----------eeecCCcCCceeEEEeCCCCCCEEEEEeCC
Confidence 466789999999999 899999999999999998665422 122357999999999999555799999999
Q ss_pred CCEEEEECCCccccceEEeeeccCCCCccEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCCCCCceeeecCCCCCeEEEE
Q 048012 273 GSLRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWDCDGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHSDDITALK 352 (616)
Q Consensus 273 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~ 352 (616)
++|++||+.. .....+ .....+...|.+++|+|++++|++|+.||.|++||++. ..+..+.+|...|.+++
T Consensus 141 ~~i~iwd~~~-~~~~~~---~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~-----~~~~~~~~h~~~v~~~~ 211 (383)
T 3ei3_B 141 GATTLRDFSG-SVIQVF---AKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLDG-----HEIFKEKLHKAKVTHAE 211 (383)
T ss_dssp TEEEEEETTS-CEEEEE---ECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETTS-----CEEEEEECSSSCEEEEE
T ss_pred CEEEEEECCC-CceEEE---eccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECCC-----CEEEEeccCCCcEEEEE
Confidence 9999999985 222222 22233445799999999999999999999999999953 47778889999999999
Q ss_pred EcCCCC-eEEEEecCCcEEEEeCCCCCC---cceEecCCCCCCcceeEEECC-CCCEEEEeeccccccCCCceEEEEeCC
Q 048012 353 FSSDGR-ILLSRSFDGSLKVWDLRKMKE---PLKVFEDLPNNYAQTNVAFSP-DEQLFLTGTSVERESTTGGLLCFYDRE 427 (616)
Q Consensus 353 ~spdg~-~l~s~s~Dg~v~lwd~~~~~~---~~~~~~~~~~~~~v~~v~fsp-dg~~l~~gs~~~~~~~~dg~i~iwd~~ 427 (616)
|+|+++ +|++++.|++|++||+++... ++..+ .+...|++++|+| ++++|++++ .|+.|+|||+.
T Consensus 212 ~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~---~~~~~v~~~~~s~~~~~~l~~~~-------~d~~i~iwd~~ 281 (383)
T 3ei3_B 212 FNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM---PHEKPVNAAYFNPTDSTKLLTTD-------QRNEIRVYSSY 281 (383)
T ss_dssp ECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE---ECSSCEEEEEECTTTSCEEEEEE-------SSSEEEEEETT
T ss_pred ECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe---cCCCceEEEEEcCCCCCEEEEEc-------CCCcEEEEECC
Confidence 999999 999999999999999997432 23333 3556799999999 999999999 89999999999
Q ss_pred CCceEEEEecCC----------------CCCeEEEEEcCCCCcEEEEeccCCCCceEEEec-------------------
Q 048012 428 KLELVSRVGISP----------------ACSVVQCAWHPKLNQIFATAGDKSQGGTHILYD------------------- 472 (616)
Q Consensus 428 ~~~~~~~~~~~~----------------~~~v~~~~~~p~~~~l~~~~~d~~~~~~~~v~~------------------- 472 (616)
+++.+..+.... ...+..++|+|++.. +++. ++.+.||+
T Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~----d~~i~iwd~~~~~~~~~l~~~~~~~~~ 355 (383)
T 3ei3_B 282 DWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLND----KRTIDIYDANSGGLVHQLRDPNAAGII 355 (383)
T ss_dssp BTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTC----CCCEEEEETTTCCEEEEECBTTBCSCC
T ss_pred CCccccccccccccccccccceEEeccCCCCceEEEecCCccc--ccCC----CCeEEEEecCCCceeeeecCCCCCceE
Confidence 988776664311 123444555555544 3333 66777777
Q ss_pred --ccCCCCCcEEEEecCCcceeccccc
Q 048012 473 --PRLSERGALVCVARAPRKKSVDDFE 497 (616)
Q Consensus 473 --~~~s~~g~~l~s~~~d~~~~~wd~~ 497 (616)
++|+|+|.+|++++ |+.+++|++.
T Consensus 356 ~~~~~s~~g~~l~s~s-d~~i~iw~~~ 381 (383)
T 3ei3_B 356 SLNKFSPTGDVLASGM-GFNILIWNRE 381 (383)
T ss_dssp CEEEECTTSSEEEEEE-TTEEEEEECC
T ss_pred EEEEEecCccEEEEec-CCcEEEEecC
Confidence 36889999999996 8999999975
No 79
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=2e-32 Score=284.74 Aligned_cols=255 Identities=18% Similarity=0.289 Sum_probs=203.1
Q ss_pred CCcccEEEEEECCCCCEEEEEEcCCcEEEEeCCCCccccccceecCCCCCCceEEEEecCCCCeEEEEeCCCeEEEEECC
Q 048012 147 GHTKIVSALAVDHSGSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSDRFLCVTGSAQAKIYDRD 226 (616)
Q Consensus 147 ~H~~~V~~v~~sp~g~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~s~d~~v~vwd~~ 226 (616)
.+...|++++|+|+|++||+|+.|++|+|||+.+.. .......|...|.+++|+|++.+|++++.|+.|++||+.
T Consensus 121 ~~~~~v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~-----~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~ 195 (393)
T 1erj_A 121 SSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRK-----IVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLR 195 (393)
T ss_dssp CCCCBEEEEEECTTSSEEEEEETTSCEEEEETTTTE-----EEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred CCceeEEEEEECCCCCEEEEEcCCCeEEEEECCCCc-----EEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECC
Confidence 345569999999999999999999999999998642 222344677889999999999999999999999999998
Q ss_pred CCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEEEECCCccccceEEeee-ccCCCCccEEEE
Q 048012 227 GLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKPK-LARPGRVAVTTC 305 (616)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~-~~~~~~~~v~~~ 305 (616)
+...... ..+...+.+++|+|..+.+|++|+.|++|++||+.++.....+.... ...+|...|.++
T Consensus 196 ~~~~~~~-------------~~~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v 262 (393)
T 1erj_A 196 TGQCSLT-------------LSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSV 262 (393)
T ss_dssp TTEEEEE-------------EECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEE
T ss_pred CCeeEEE-------------EEcCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEE
Confidence 7654221 12456799999999555799999999999999998866544332211 123566789999
Q ss_pred EECCCCCeEEEEeCCCcEEEEeCCCCCC--------CCCceeeecCCCCCeEEEEEcCCCCeEEEEecCCcEEEEeCCCC
Q 048012 306 AWDCDGKCIAGGIGDGSIQVWNLKPGWG--------SRPDIHVEKGHSDDITALKFSSDGRILLSRSFDGSLKVWDLRKM 377 (616)
Q Consensus 306 ~~sp~g~~l~~g~~dg~I~iwd~~~~~~--------~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~v~lwd~~~~ 377 (616)
+|+|+|++|++|+.||+|++||++.... .......+.+|...|.+++|++++.+|++++.|++|++||++++
T Consensus 263 ~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~ 342 (393)
T 1erj_A 263 VFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSG 342 (393)
T ss_dssp EECTTSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTC
T ss_pred EECCCCCEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCC
Confidence 9999999999999999999999976321 11234567789999999999999999999999999999999875
Q ss_pred CCcceEecCCCCCCcceeEEECC------CCCEEEEeeccccccCCCceEEEEeCCCC
Q 048012 378 KEPLKVFEDLPNNYAQTNVAFSP------DEQLFLTGTSVERESTTGGLLCFYDREKL 429 (616)
Q Consensus 378 ~~~~~~~~~~~~~~~v~~v~fsp------dg~~l~~gs~~~~~~~~dg~i~iwd~~~~ 429 (616)
.++..+..|. ..|.+++|++ ++.+|++|+ .||.|+||++...
T Consensus 343 -~~~~~l~~h~--~~v~~v~~~~~~~~~p~~~~l~sgs-------~Dg~i~iW~~~~~ 390 (393)
T 1erj_A 343 -NPLLMLQGHR--NSVISVAVANGSSLGPEYNVFATGS-------GDCKARIWKYKKI 390 (393)
T ss_dssp -CEEEEEECCS--SCEEEEEECSSCTTCTTCEEEEEEE-------TTSEEEEEEEEEC
T ss_pred -eEEEEECCCC--CCEEEEEecCCcCcCCCCCEEEEEC-------CCCcEEECccccc
Confidence 4456666544 5599999986 688999999 8999999997543
No 80
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=1.7e-31 Score=268.54 Aligned_cols=300 Identities=16% Similarity=0.257 Sum_probs=232.0
Q ss_pred CCCCcceEEecC--Ccc--cEEEEEECCCCCEEEEEEcCCcEEEEeCCCCccccccceecCCCCCCceEEEEecCCCCeE
Q 048012 136 QIPMSNEIVLKG--HTK--IVSALAVDHSGSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSDRF 211 (616)
Q Consensus 136 ~~p~~~~~~l~~--H~~--~V~~v~~sp~g~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l 211 (616)
.+|..++.+|.. ... .+++|+||+++ +||+| .|++|+|||+.++.. ...+ ....|...|.+++|+|++++|
T Consensus 8 ~~p~~p~rvldap~~~~d~y~~~l~WS~~~-~lAvg-~D~tV~iWd~~tg~~-~~~~--~~~~~~~~V~~v~~~~~~~~l 82 (318)
T 4ggc_A 8 YIPSLPDRILDAPEIRNDYYLNLVDWSSGN-VLAVA-LDNSVYLWSASSGDI-LQLL--QMEQPGEYISSVAWIKEGNYL 82 (318)
T ss_dssp CCCSSCSEEEECTTCCCCTTCBCEEECTTS-EEEEE-ETTEEEEEETTTCCE-EEEE--ECCSTTCCEEEEEECTTSSEE
T ss_pred ccCCCCCEEeeCCCCcccccceEEEECCCC-EEEEE-eCCEEEEEECCCCCE-EEEE--EecCCCCeEEEEEECCCCCEE
Confidence 345555556542 222 35789999886 77765 599999999987531 1111 123466679999999999999
Q ss_pred EEEeCCCeEEEEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEEEECCCccccceEEe
Q 048012 212 LCVTGSAQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIK 291 (616)
Q Consensus 212 ~~~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~ 291 (616)
++++.|+.|+||++.+.+. +..+.+|...+.++.+.+ .++++++.++.+++|+...........
T Consensus 83 ~sgs~Dg~v~iw~~~~~~~------------~~~~~~h~~~~~~~~~~~---~~l~s~~~~~~~~~~~~~~~~~~~~~~- 146 (318)
T 4ggc_A 83 AVGTSSAEVQLWDVQQQKR------------LRNMTSHSARVGSLSWNS---YILSSGSRSGHIHHHDVRVAEHHVATL- 146 (318)
T ss_dssp EEEETTSEEEEEETTTTEE------------EEEEECCSSCEEEEEEET---TEEEEEETTSEEEEEETTSSSCEEEEE-
T ss_pred EEEECCCcEEEeecCCcee------------EEEecCccceEEEeecCC---CEEEEEecCCceEeeecCCCceeEEEE-
Confidence 9999999999999998764 333568888888877764 589999999999999987654333222
Q ss_pred eeccCCCCccEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCCCCCceeeecCCCCCeEEEEEcCCCCeE---EEEecCCc
Q 048012 292 PKLARPGRVAVTTCAWDCDGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHSDDITALKFSSDGRIL---LSRSFDGS 368 (616)
Q Consensus 292 ~~~~~~~~~~v~~~~~sp~g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l---~s~s~Dg~ 368 (616)
.+|...+.++.|++++++|++++.||+|++||++++............|...|.++++++++..+ ++++.+++
T Consensus 147 ----~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 222 (318)
T 4ggc_A 147 ----SGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRH 222 (318)
T ss_dssp ----ECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCE
T ss_pred ----cCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCE
Confidence 24455799999999999999999999999999998754445566677888999999999976543 35667899
Q ss_pred EEEEeCCCCCCcceEecCCCCCCcceeEEECCCCCEEEEeeccccccCCCceEEEEeCCCCceEEEEecCCCCCeEEEEE
Q 048012 369 LKVWDLRKMKEPLKVFEDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREKLELVSRVGISPACSVVQCAW 448 (616)
Q Consensus 369 v~lwd~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~ 448 (616)
|++||.+.... .... .+...+..+.|++++..+++++ +..|+.|+|||+.+++++.++.. |...|++++|
T Consensus 223 i~lwd~~~~~~-~~~~---~~~~~v~~~~~~~~~~~~~~~s-----g~~d~~i~iwd~~~~~~~~~l~g-H~~~V~~l~~ 292 (318)
T 4ggc_A 223 IRIWNVCSGAC-LSAV---DAHSQVCSILWSPHYKELISGH-----GFAQNQLVIWKYPTMAKVAELKG-HTSRVLSLTM 292 (318)
T ss_dssp EEEEETTTCCE-EEEE---ECSSCEEEEEEETTTTEEEEEE-----CTTTCCEEEEETTTCCEEEEECC-CSSCEEEEEE
T ss_pred EEEEecccccc-cccc---cceeeeeeeeecccccceEEEE-----EcCCCEEEEEECCCCcEEEEEcC-CCCCEEEEEE
Confidence 99999986543 2222 2334589999999999988765 22689999999999999999975 7788999999
Q ss_pred cCCCCcEEEEeccCCCCceEEEeccc
Q 048012 449 HPKLNQIFATAGDKSQGGTHILYDPR 474 (616)
Q Consensus 449 ~p~~~~l~~~~~d~~~~~~~~v~~~~ 474 (616)
+|++++|++++. ++.++||++.
T Consensus 293 spdg~~l~S~s~----D~~v~iWd~~ 314 (318)
T 4ggc_A 293 SPDGATVASAAA----DETLRLWRCF 314 (318)
T ss_dssp CTTSSCEEEEET----TTEEEEECCS
T ss_pred cCCCCEEEEEec----CCeEEEEECC
Confidence 999988888887 6788888873
No 81
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.5e-32 Score=280.27 Aligned_cols=276 Identities=17% Similarity=0.254 Sum_probs=229.2
Q ss_pred CCCCceEEEEecCCCCeEEEEeCCCeEEEEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCC
Q 048012 194 SEGHQVRNLSWSPTSDRFLCVTGSAQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDG 273 (616)
Q Consensus 194 ~~~~~v~~l~~sp~g~~l~~~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg 273 (616)
.|...|.+++|+|++++|++++.++.|+|||+..... +..+.+|...|.+++|+|++ .+|++++.|+
T Consensus 30 ~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~------------~~~~~~h~~~v~~~~~~~~~-~~l~s~~~dg 96 (369)
T 3zwl_B 30 GHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGER------------LGTLDGHTGTIWSIDVDCFT-KYCVTGSADY 96 (369)
T ss_dssp CCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCE------------EEEECCCSSCEEEEEECTTS-SEEEEEETTT
T ss_pred EeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchh------------hhhhhhcCCcEEEEEEcCCC-CEEEEEeCCC
Confidence 5777899999999999999999999999999887653 33357899999999999977 6999999999
Q ss_pred CEEEEECCCccccceEEeeeccCCCCccEEEEEECCCCCeEEEEeCC-----CcEEEEeCCCCCCCC-------Cceeee
Q 048012 274 SLRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWDCDGKCIAGGIGD-----GSIQVWNLKPGWGSR-------PDIHVE 341 (616)
Q Consensus 274 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~g~~d-----g~I~iwd~~~~~~~~-------~~~~~~ 341 (616)
+|++||+.+++....+. +...|.+++|+|++++|++++.+ |.|++||+....... .....+
T Consensus 97 ~i~iwd~~~~~~~~~~~-------~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~ 169 (369)
T 3zwl_B 97 SIKLWDVSNGQCVATWK-------SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKI 169 (369)
T ss_dssp EEEEEETTTCCEEEEEE-------CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEE
T ss_pred eEEEEECCCCcEEEEee-------cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeec
Confidence 99999998876554442 23379999999999999999999 999999998652111 133444
Q ss_pred cCCCC--CeEEEEEcCCCCeEEEEecCCcEEEEeCCCCCCcceEecCCCCCCcceeEEECCCCCEEEEeeccccccCCCc
Q 048012 342 KGHSD--DITALKFSSDGRILLSRSFDGSLKVWDLRKMKEPLKVFEDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGG 419 (616)
Q Consensus 342 ~~h~~--~V~~l~~spdg~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg 419 (616)
..|.. .|.+++|+|++++|++++.||.|++||+++....+..+..+ ...|.+++|+|++++|++++ .+|
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~-------~d~ 240 (369)
T 3zwl_B 170 ITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLH--EKSISDMQFSPDLTYFITSS-------RDT 240 (369)
T ss_dssp ECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECC--SSCEEEEEECTTSSEEEEEE-------TTS
T ss_pred cCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecC--CCceeEEEECCCCCEEEEec-------CCc
Confidence 55666 89999999999999999999999999999755566666553 45699999999999999999 899
Q ss_pred eEEEEeCCCCceEEEEecCCCCCeEEEEEcCCCCcEEEEeccCC-----------------------------CCceEEE
Q 048012 420 LLCFYDREKLELVSRVGISPACSVVQCAWHPKLNQIFATAGDKS-----------------------------QGGTHIL 470 (616)
Q Consensus 420 ~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~-----------------------------~~~~~~v 470 (616)
.|++||+.+++.+..+. +...+..++|+|++..+++++.++. .++...|
T Consensus 241 ~i~v~d~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v 318 (369)
T 3zwl_B 241 NSFLVDVSTLQVLKKYE--TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPL 318 (369)
T ss_dssp EEEEEETTTCCEEEEEE--CSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEECCSSCE
T ss_pred eEEEEECCCCceeeeec--CCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheecccCcE
Confidence 99999999999998886 5678999999999999999987530 0122234
Q ss_pred ecccCCCCCcEEEEecCCcceecccccCCc
Q 048012 471 YDPRLSERGALVCVARAPRKKSVDDFEVAP 500 (616)
Q Consensus 471 ~~~~~s~~g~~l~s~~~d~~~~~wd~~~~~ 500 (616)
..++|+|+|.+|++++.|+.+++|++....
T Consensus 319 ~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~ 348 (369)
T 3zwl_B 319 NTVAISPQGTSYASGGEDGFIRLHHFEKSY 348 (369)
T ss_dssp EEEEECTTSSEEEEEETTSEEEEEEECHHH
T ss_pred EEEEECCCCCEEEEEcCCCeEEEEECcccc
Confidence 447799999999999999999999986543
No 82
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=100.00 E-value=2.5e-32 Score=280.15 Aligned_cols=289 Identities=15% Similarity=0.217 Sum_probs=226.9
Q ss_pred CCCcceEEecCCcccEEEEEECCC---CCEEEEEEcCCcEEEEeCCCCccccccceecCCCCCCceEEEEecCCCCeEEE
Q 048012 137 IPMSNEIVLKGHTKIVSALAVDHS---GSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSDRFLC 213 (616)
Q Consensus 137 ~p~~~~~~l~~H~~~V~~v~~sp~---g~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~ 213 (616)
.|......+.+|.+.|++|+|+|+ |.+|++|+.||.|+|||+...... .......|...|.+++|+|++++|++
T Consensus 27 ~~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~---~~~~~~~h~~~v~~~~~~~~~~~l~s 103 (368)
T 3mmy_A 27 NPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQT---IPKAQQMHTGPVLDVCWSDDGSKVFT 103 (368)
T ss_dssp CTTCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCE---EEEEEEECSSCEEEEEECTTSSEEEE
T ss_pred CCcceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCce---eEEEeccccCCEEEEEECcCCCEEEE
Confidence 455566688999999999999999 699999999999999999863221 21233357788999999999999999
Q ss_pred EeCCCeEEEEECCCCeeeeEeeCceeEeecccCCCcccceEEEEE--cCCCCCEEEEEeCCCCEEEEECCCccccceEEe
Q 048012 214 VTGSAQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEW--HPKTKETILTSSEDGSLRIWDVNEFKSQKQVIK 291 (616)
Q Consensus 214 ~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~--~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~ 291 (616)
++.|+.|+|||+....... +.+|...|++++| ++++ .+|++++.|+.|++||+.+.+....+..
T Consensus 104 ~~~dg~v~iwd~~~~~~~~-------------~~~~~~~v~~~~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~ 169 (368)
T 3mmy_A 104 ASCDKTAKMWDLSSNQAIQ-------------IAQHDAPVKTIHWIKAPNY-SCVMTGSWDKTLKFWDTRSSNPMMVLQL 169 (368)
T ss_dssp EETTSEEEEEETTTTEEEE-------------EEECSSCEEEEEEEECSSC-EEEEEEETTSEEEEECSSCSSCSEEEEC
T ss_pred EcCCCcEEEEEcCCCCcee-------------eccccCceEEEEEEeCCCC-CEEEEccCCCcEEEEECCCCcEEEEEec
Confidence 9999999999999876432 3468899999999 7876 5899999999999999998765554432
Q ss_pred eeccCCCCccEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCCCCCceeeecCCCCCeEEEEEcCCCCe----EEEEecCC
Q 048012 292 PKLARPGRVAVTTCAWDCDGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHSDDITALKFSSDGRI----LLSRSFDG 367 (616)
Q Consensus 292 ~~~~~~~~~~v~~~~~sp~g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~----l~s~s~Dg 367 (616)
. ..+.++.+. +..+++++.++.|++|+++... .........+...+.++.+.++... |++++.||
T Consensus 170 ~-------~~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg 238 (368)
T 3mmy_A 170 P-------ERCYCADVI--YPMAVVATAERGLIVYQLENQP--SEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEG 238 (368)
T ss_dssp S-------SCEEEEEEE--TTEEEEEEGGGCEEEEECSSSC--EEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTS
T ss_pred C-------CCceEEEec--CCeeEEEeCCCcEEEEEecccc--chhhhccccccCCCceEEEcccCCCCCCeEEEecCCC
Confidence 1 146666665 4588899999999999998651 1222223334455677777665554 99999999
Q ss_pred cEEEEeCCCCC--CcceEecCCCC----------CCcceeEEECCCCCEEEEeeccccccCCCceEEEEeCCCCceEEEE
Q 048012 368 SLKVWDLRKMK--EPLKVFEDLPN----------NYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREKLELVSRV 435 (616)
Q Consensus 368 ~v~lwd~~~~~--~~~~~~~~~~~----------~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~~~~~~~~ 435 (616)
.|++||++... ..+..+..+.. ...|++++|+|++++|++++ .||.|+|||+.+++++..+
T Consensus 239 ~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~-------~dg~i~iwd~~~~~~~~~~ 311 (368)
T 3mmy_A 239 RVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVG-------SDGRFSFWDKDARTKLKTS 311 (368)
T ss_dssp EEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEE-------TTSCEEEEETTTTEEEEEC
T ss_pred cEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEc-------cCCeEEEEECCCCcEEEEe
Confidence 99999998653 23344443321 11599999999999999999 8999999999999999888
Q ss_pred ecCCCCCeEEEEEcCCCCcEEEEecc
Q 048012 436 GISPACSVVQCAWHPKLNQIFATAGD 461 (616)
Q Consensus 436 ~~~~~~~v~~~~~~p~~~~l~~~~~d 461 (616)
.. |...|.+++|+|++.+|++++.|
T Consensus 312 ~~-~~~~v~~~~~s~~g~~l~~~s~d 336 (368)
T 3mmy_A 312 EQ-LDQPISACCFNHNGNIFAYASSY 336 (368)
T ss_dssp CC-CSSCEEEEEECTTSSCEEEEECC
T ss_pred cC-CCCCceEEEECCCCCeEEEEecc
Confidence 64 67889999999999999988874
No 83
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.4e-33 Score=291.44 Aligned_cols=243 Identities=17% Similarity=0.188 Sum_probs=188.3
Q ss_pred CCCceEEEEecCCCCeEEEEeCCCeEEEEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCC
Q 048012 195 EGHQVRNLSWSPTSDRFLCVTGSAQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGS 274 (616)
Q Consensus 195 ~~~~v~~l~~sp~g~~l~~~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~ 274 (616)
+...|.+++|+|++++|++++.|+.|+||++.+... ..+..+.+|...|.+++|+|++ .+|++++.|++
T Consensus 10 ~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~----------~~~~~~~~h~~~v~~~~~s~~~-~~l~s~s~d~~ 78 (377)
T 3dwl_C 10 LPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGW----------KHARTFSDHDKIVTCVDWAPKS-NRIVTCSQDRN 78 (377)
T ss_dssp CSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEE----------EECCCBCCCSSCEEEEEECTTT-CCEEEEETTSS
T ss_pred CCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCce----------EEEEEEecCCceEEEEEEeCCC-CEEEEEeCCCe
Confidence 455799999999999999999999999999986631 1255678999999999999987 58999999999
Q ss_pred EEEEECCCccccceEEeeeccCCCCccEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCCCCCceeeecC-CCCCeEEEEE
Q 048012 275 LRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWDCDGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKG-HSDDITALKF 353 (616)
Q Consensus 275 v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~-h~~~V~~l~~ 353 (616)
|+|||+.+........ ....|...|.+++|+|++++|++|+.||.|++||++.+. .......+.. |...|++++|
T Consensus 79 v~vwd~~~~~~~~~~~---~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~-~~~~~~~~~~~h~~~v~~~~~ 154 (377)
T 3dwl_C 79 AYVYEKRPDGTWKQTL---VLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQEN-DWWVSKHLKRPLRSTILSLDW 154 (377)
T ss_dssp EEEC------CCCCEE---ECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC------CCCCEEECSSCCSCEEEEEE
T ss_pred EEEEEcCCCCceeeee---EecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcc-cceeeeEeecccCCCeEEEEE
Confidence 9999998765111111 123456689999999999999999999999999998752 1124556666 9999999999
Q ss_pred cCCCCeEEEEecCCcEEEEeCCCCCC--------------cceEecCCCCCCcceeEEECCCCCEEEEeeccccccCCCc
Q 048012 354 SSDGRILLSRSFDGSLKVWDLRKMKE--------------PLKVFEDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGG 419 (616)
Q Consensus 354 spdg~~l~s~s~Dg~v~lwd~~~~~~--------------~~~~~~~~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg 419 (616)
+|++++|++++.|++|++||++.... .........+...|++++|+|++++|++++ .||
T Consensus 155 ~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~-------~d~ 227 (377)
T 3dwl_C 155 HPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEYPSGGWVHAVGFSPSGNALAYAG-------HDS 227 (377)
T ss_dssp CTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECCCCSSSEEEEEECTTSSCEEEEE-------TTT
T ss_pred cCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcccCCceEEEEEECCCCCEEEEEe-------CCC
Confidence 99999999999999999999863210 011111225667799999999999999999 899
Q ss_pred eEEEEeCCCCce----EEEEecCCCCCeEEEEEcCCCCcEEEEec
Q 048012 420 LLCFYDREKLEL----VSRVGISPACSVVQCAWHPKLNQIFATAG 460 (616)
Q Consensus 420 ~i~iwd~~~~~~----~~~~~~~~~~~v~~~~~~p~~~~l~~~~~ 460 (616)
.|+|||+.+++. +..+.. |...|.+++|+|++..|++++.
T Consensus 228 ~i~iwd~~~~~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~ 271 (377)
T 3dwl_C 228 SVTIAYPSAPEQPPRALITVKL-SQLPLRSLLWANESAIVAAGYN 271 (377)
T ss_dssp EEC-CEECSTTSCEEECCCEEC-SSSCEEEEEEEETTEEEEEESS
T ss_pred cEEEEECCCCCCcceeeEeecC-CCCceEEEEEcCCCCEEEEEcC
Confidence 999999999987 666654 6678999999999888877764
No 84
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=2.5e-31 Score=282.77 Aligned_cols=298 Identities=19% Similarity=0.263 Sum_probs=235.5
Q ss_pred ceEEecCCcccEEEEEECCCCCEEEEEEcCCcEEEEeCCCCccccccceecCCCCCCceEEEEec--CCCCeEEEEeCCC
Q 048012 141 NEIVLKGHTKIVSALAVDHSGSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWS--PTSDRFLCVTGSA 218 (616)
Q Consensus 141 ~~~~l~~H~~~V~~v~~sp~g~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s--p~g~~l~~~s~d~ 218 (616)
....+.+|...|++++|++++ +|++|+.||+|++||+.++. .......|...|.+++|+ +++.+|++++.|+
T Consensus 154 ~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~~-----~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~ 227 (464)
T 3v7d_B 154 FLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGC-----CTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDN 227 (464)
T ss_dssp EEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEEETTTTE-----EEEEECCCSSCEEEEEEEESSSCEEEEEEETTS
T ss_pred EEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCCCc-----EEEEECCCCCccEEEEEecCCCCCEEEEEcCCC
Confidence 345688999999999999988 99999999999999998753 122334577889999998 5778999999999
Q ss_pred eEEEEECCCCeeeeEeeCc-----------eeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEEEECCCccccc
Q 048012 219 QAKIYDRDGLTLGEFVKGD-----------MYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQK 287 (616)
Q Consensus 219 ~v~vwd~~~~~~~~~~~~~-----------~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~ 287 (616)
.|++||+............ .....+..+.+|...|.++..+ + .+|++++.|+.|++||+.+.+...
T Consensus 228 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~-~~l~~~~~d~~i~vwd~~~~~~~~ 304 (464)
T 3v7d_B 228 TLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGH--G-NIVVSGSYDNTLIVWDVAQMKCLY 304 (464)
T ss_dssp CEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEEEEE--T-TEEEEEETTSCEEEEETTTTEEEE
T ss_pred cEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEEcCC--C-CEEEEEeCCCeEEEEECCCCcEEE
Confidence 9999999865422110000 0000123457888889888544 4 599999999999999998766544
Q ss_pred eEEeeeccCCCCccEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCCCCCceeeecCCCCCeEEEEEcCCCCeEEEEecCC
Q 048012 288 QVIKPKLARPGRVAVTTCAWDCDGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHSDDITALKFSSDGRILLSRSFDG 367 (616)
Q Consensus 288 ~~~~~~~~~~~~~~v~~~~~sp~g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg 367 (616)
.+ .+|...|.+++|+|++++|++|+.||.|++||++++ ..+..+.+|...|.+++|+ +++|++++.||
T Consensus 305 ~~------~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~----~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg 372 (464)
T 3v7d_B 305 IL------SGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENG----ELMYTLQGHTALVGLLRLS--DKFLVSAAADG 372 (464)
T ss_dssp EE------CCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTT----EEEEEECCCSSCEEEEEEC--SSEEEEEETTS
T ss_pred Ee------cCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC----cEEEEEeCCCCcEEEEEEc--CCEEEEEeCCC
Confidence 33 245568999999999999999999999999999876 6788889999999999997 68999999999
Q ss_pred cEEEEeCCCCCCcceEecCCCCCCcceeEEECCCCCEEEEeeccccccCCCceEEEEeCCCCceEEEEecCCCCCeEEEE
Q 048012 368 SLKVWDLRKMKEPLKVFEDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREKLELVSRVGISPACSVVQCA 447 (616)
Q Consensus 368 ~v~lwd~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~ 447 (616)
+|++||+++........ +...+..++|++++++|++|+ +|.|+|||+.+++++..+...+...|.+++
T Consensus 373 ~v~vwd~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~~~~--------dg~i~iwd~~~g~~~~~~~~~~~~~v~~v~ 440 (464)
T 3v7d_B 373 SIRGWDANDYSRKFSYH----HTNLSAITTFYVSDNILVSGS--------ENQFNIYNLRSGKLVHANILKDADQIWSVN 440 (464)
T ss_dssp EEEEEETTTCCEEEEEE----CTTCCCEEEEEECSSEEEEEE--------TTEEEEEETTTCCEEESCTTTTCSEEEEEE
T ss_pred cEEEEECCCCceeeeec----CCCCccEEEEEeCCCEEEEec--------CCeEEEEECCCCcEEehhhccCCCcEEEEE
Confidence 99999999754332221 334477889999999999986 789999999999999876666788999999
Q ss_pred EcCCCCcEEEEeccCCCCceEEEecccCC
Q 048012 448 WHPKLNQIFATAGDKSQGGTHILYDPRLS 476 (616)
Q Consensus 448 ~~p~~~~l~~~~~d~~~~~~~~v~~~~~s 476 (616)
|+ +..+++++.+ ++...+|-+.|+
T Consensus 441 ~~--~~~l~~~~~~---~g~~~i~~ldfs 464 (464)
T 3v7d_B 441 FK--GKTLVAAVEK---DGQSFLEILDFS 464 (464)
T ss_dssp EE--TTEEEEEEEE---TTEEEEEEEECC
T ss_pred ec--CCEEEEEEEe---CCeEEEEEeecC
Confidence 98 4567766664 677777766654
No 85
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=2.2e-32 Score=281.42 Aligned_cols=280 Identities=15% Similarity=0.178 Sum_probs=222.5
Q ss_pred CCCCceEEEEecCCCCeEEEEeCCCeEEEEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCC
Q 048012 194 SEGHQVRNLSWSPTSDRFLCVTGSAQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDG 273 (616)
Q Consensus 194 ~~~~~v~~l~~sp~g~~l~~~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg 273 (616)
.|..+|.+++|+|++++|++++.++.|+|||+.+.... .+..+.+|...|.+++|+|++ .+|++++.|+
T Consensus 6 ~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~----------~~~~~~~h~~~v~~~~~~~~~-~~l~~~~~dg 74 (372)
T 1k8k_C 6 FLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWV----------QVHELKEHNGQVTGVDWAPDS-NRIVTCGTDR 74 (372)
T ss_dssp SCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEE----------EEEEEECCSSCEEEEEEETTT-TEEEEEETTS
T ss_pred ccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEE----------eeeeecCCCCcccEEEEeCCC-CEEEEEcCCC
Confidence 36678999999999999999999999999999877421 133356899999999999977 6999999999
Q ss_pred CEEEEECCCccccceEEeeeccCCCCccEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCCCCCceeeecCCCCCeEEEEE
Q 048012 274 SLRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWDCDGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHSDDITALKF 353 (616)
Q Consensus 274 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~ 353 (616)
.|++||+.+.+...... ...+...|.+++|+|++++|++++.||.|++||++.+............|...|.+++|
T Consensus 75 ~i~vwd~~~~~~~~~~~----~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~ 150 (372)
T 1k8k_C 75 NAYVWTLKGRTWKPTLV----ILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDW 150 (372)
T ss_dssp CEEEEEEETTEEEEEEE----CCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEE
T ss_pred eEEEEECCCCeeeeeEE----eecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEE
Confidence 99999997654322221 12455589999999999999999999999999998752111123444678999999999
Q ss_pred cCCCCeEEEEecCCcEEEEeCCC-----------------CCCcceEecCCCCCCcceeEEECCCCCEEEEeeccccccC
Q 048012 354 SSDGRILLSRSFDGSLKVWDLRK-----------------MKEPLKVFEDLPNNYAQTNVAFSPDEQLFLTGTSVEREST 416 (616)
Q Consensus 354 spdg~~l~s~s~Dg~v~lwd~~~-----------------~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~gs~~~~~~~ 416 (616)
+|++++|++++.|+.|++||++. ....+..+. .+...+.+++|+|++++|++++
T Consensus 151 ~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~------- 221 (372)
T 1k8k_C 151 HPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESS--SSCGWVHGVCFSANGSRVAWVS------- 221 (372)
T ss_dssp CTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECC--CCSSCEEEEEECSSSSEEEEEE-------
T ss_pred cCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecC--CCCCeEEEEEECCCCCEEEEEe-------
Confidence 99999999999999999999752 223344443 3456699999999999999999
Q ss_pred CCceEEEEeCCCCceEEEEecCCCCCeEEEEEcCCCCcEEEEeccC--------C-------------------------
Q 048012 417 TGGLLCFYDREKLELVSRVGISPACSVVQCAWHPKLNQIFATAGDK--------S------------------------- 463 (616)
Q Consensus 417 ~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~--------~------------------------- 463 (616)
.||.|++||+.+++++..+.. +...|.+++|+|++..|+++ .|+ .
T Consensus 222 ~d~~i~i~d~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (372)
T 1k8k_C 222 HDSTVCLADADKKMAVATLAS-ETLPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTAR 299 (372)
T ss_dssp TTTEEEEEEGGGTTEEEEEEC-SSCCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHH
T ss_pred CCCEEEEEECCCCceeEEEcc-CCCCeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcchh
Confidence 899999999999999998875 56789999999998877766 532 0
Q ss_pred -----------------------CCceEEEecccC-CCCC---cEEEEecCCcceecccccCC
Q 048012 464 -----------------------QGGTHILYDPRL-SERG---ALVCVARAPRKKSVDDFEVA 499 (616)
Q Consensus 464 -----------------------~~~~~~v~~~~~-s~~g---~~l~s~~~d~~~~~wd~~~~ 499 (616)
.+|...|+.+++ +++| .+|++++.|+.+++|++...
T Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~~ 362 (372)
T 1k8k_C 300 ERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSL 362 (372)
T ss_dssp HHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHHH
T ss_pred hhhhhcccccccccCccccccccccccCCcceeEEecCCCcceeeEEEecCCCceEEEEecCh
Confidence 133334455553 3677 99999999999999998543
No 86
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.2e-33 Score=290.64 Aligned_cols=309 Identities=10% Similarity=0.074 Sum_probs=231.6
Q ss_pred cCCcccEEEEEECCCCCEEEEEEcCCcEEEEeCCCCccccccceecCCCCCCceEEEEecCCCCeEEEEeCCCeEEEEEC
Q 048012 146 KGHTKIVSALAVDHSGSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSDRFLCVTGSAQAKIYDR 225 (616)
Q Consensus 146 ~~H~~~V~~v~~sp~g~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~s~d~~v~vwd~ 225 (616)
+.-...|.+|+|+|||+++||++.|++|+ |.... +.+ ..|...|.+++|+|+| .++.+.+|+.
T Consensus 12 ~~~~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~----~~l----~gh~~~v~~V~FsPdg-------~~~~~~~~~~ 74 (588)
T 2j04_A 12 KEFEDWKNNLTWARDGTLYLTTFPDISIG--QPKYA----KDI----NCNSKNLFHVKEFPLE-------FENKLDFELA 74 (588)
T ss_dssp CCCSSSSCCEEECTTSCEEEECSSSEEEE--EECCC----SCC----SSBGGGTEEEEEECCC-------CCCTTTTSCC
T ss_pred hHhhccEEEEEECCCCCEEEEEcCCceee--ccccc----cee----cCCCccEEEEEECCCC-------CcceEEEEeC
Confidence 44568899999999999999999999999 63322 112 3577789999999998 4666666665
Q ss_pred CCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEEEECCCccccceEEeeeccCCCCccEEEE
Q 048012 226 DGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPGRVAVTTC 305 (616)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~ 305 (616)
.+..+ . ...|...|.+++|+|+| .+|++++.||+|+|||... ....+ . +...-....|.++
T Consensus 75 ~~~~~-------------~-~~~~~~~V~~vawSPdG-~~LAs~s~dg~V~iwd~~~--~l~~l-~-~~~~~~~~sv~sv 135 (588)
T 2j04_A 75 QQNGL-------------L-NSQPVCYPRVCKPSPID-DWMAVLSNNGNVSVFKDNK--MLTNL-D-SKGNLSSRTYHCF 135 (588)
T ss_dssp CSSCS-------------S-TTSCSCCEEEEEECSSS-SCEEEEETTSCEEEEETTE--EEEEC-C-CSSCSTTTCEEEE
T ss_pred CCceE-------------e-ecCCCCcEEEEEECCCC-CEEEEEeCCCcEEEEeCCc--eeeec-c-CCCccccccEEEE
Confidence 43321 1 12558889999999988 5899999999999999643 11111 1 1100001259999
Q ss_pred EECCCCCeEEEEeCCCcEEEEeCCCCCCCCC---ceeee----cCCCCCeEEEEEcCCCCeEEEEecCCcEEEEeCCCCC
Q 048012 306 AWDCDGKCIAGGIGDGSIQVWNLKPGWGSRP---DIHVE----KGHSDDITALKFSSDGRILLSRSFDGSLKVWDLRKMK 378 (616)
Q Consensus 306 ~~sp~g~~l~~g~~dg~I~iwd~~~~~~~~~---~~~~~----~~h~~~V~~l~~spdg~~l~s~s~Dg~v~lwd~~~~~ 378 (616)
+|||+|++||+|+.||+|+|||+..+....+ .+..+ .+|...|.+|+|+||| |++++.|++|++||+....
T Consensus 136 afSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~ 213 (588)
T 2j04_A 136 EWNPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASS 213 (588)
T ss_dssp EECSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSS
T ss_pred EEcCCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCc
Confidence 9999999999999999999999987521001 24454 6788899999999999 8889999999999998654
Q ss_pred C--cceEecCCCCCCcceeEEECCCCCEEEEeeccccccCCCceEEEEeCCCCceEEEEecCCCCCeEEEEE--cCCCCc
Q 048012 379 E--PLKVFEDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREKLELVSRVGISPACSVVQCAW--HPKLNQ 454 (616)
Q Consensus 379 ~--~~~~~~~~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~--~p~~~~ 454 (616)
. ..+.+.. .+...|.+++|+ |++|++++ ++.|++||+.+++...... .|...|..++| +|++..
T Consensus 214 ~~~~~~tL~~-~h~~~V~svaFs--g~~LASa~--------~~tIkLWd~~~~~~~~~~~-gh~~~V~~va~~~s~d~~~ 281 (588)
T 2j04_A 214 HQPVSRMIQN-ASRRKITDLKIV--DYKVVLTC--------PGYVHKIDLKNYSISSLKT-GSLENFHIIPLNHEKESTI 281 (588)
T ss_dssp SCCCEEEEEC-CCSSCCCCEEEE--TTEEEEEC--------SSEEEEEETTTTEEEEEEC-SCCSCCCEEEETTCSSCEE
T ss_pred cccceeeecc-cccCcEEEEEEE--CCEEEEEe--------CCeEEEEECCCCeEEEEEc-CCCceEEEEEeeeCCCCCE
Confidence 2 1234422 244569999999 68999886 5899999999887743332 47889999999 999888
Q ss_pred EEEEeccCCCCceEEEecc---cCCCCCcEEEEecCCcceecccccC------------CceeeCCCCCCcc
Q 048012 455 IFATAGDKSQGGTHILYDP---RLSERGALVCVARAPRKKSVDDFEV------------APVIHNPHALPLF 511 (616)
Q Consensus 455 l~~~~~d~~~~~~~~v~~~---~~s~~g~~l~s~~~d~~~~~wd~~~------------~~~~~~p~~~~l~ 511 (616)
|+++.. +++ +||.. +++|++..+++. |+++++|+... ..+.|+|++..+.
T Consensus 282 La~a~e----dG~-klw~~d~~~~spd~~l~a~~--d~~v~lW~~~g~~l~~~~~~~~I~~va~SPdG~~lA 346 (588)
T 2j04_A 282 LLMSNK----TSY-KVLLEDELHVTADNIIAPYL--EKKFKKWSTIWNEFNNYETTLVIHGISLSPDGYSIA 346 (588)
T ss_dssp EEECSS----CEE-EEEESSSEEEECCCSSHHHH--HHHHHHTTTTTTSSSSSCCEEEEEEEEECTTSSEEE
T ss_pred EEEEcC----CCC-EEEeeccEEECCCceEEEEc--CCEEEEEECCCCceeeeccceEEEEEEECCCCCEEE
Confidence 888776 566 78864 678999888875 89999999732 2367789986554
No 87
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=4e-32 Score=283.41 Aligned_cols=296 Identities=16% Similarity=0.225 Sum_probs=229.5
Q ss_pred EEEEEECCCCCE-EEEEEcCCcEEEEeCCCCccccccceecCCCCCCceEEEEecC-CCCeEEEEeCCCeEEEEECCCCe
Q 048012 152 VSALAVDHSGSR-VLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSP-TSDRFLCVTGSAQAKIYDRDGLT 229 (616)
Q Consensus 152 V~~v~~sp~g~~-lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp-~g~~l~~~s~d~~v~vwd~~~~~ 229 (616)
...++++|+... +++++.||.|+||++......... ......|...|.+++|+| ++.+|++++.|+.|+||++....
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~-~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~ 115 (402)
T 2aq5_A 37 SGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKN-VPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGG 115 (402)
T ss_dssp SCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTT-CCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTC
T ss_pred CCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCC-CceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCC
Confidence 446788887754 445789999999999754322122 223345778899999999 89999999999999999998763
Q ss_pred eeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEEEECCCccccceEEeeeccCCCCccEEEEEECC
Q 048012 230 LGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWDC 309 (616)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp 309 (616)
..... ...+..+.+|...|.+++|+|++.++|++++.|++|+|||+.+++....+. ...|...|.+++|+|
T Consensus 116 ~~~~~-----~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~----~~~~~~~v~~~~~~~ 186 (402)
T 2aq5_A 116 LVLPL-----REPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLG----PDVHPDTIYSVDWSR 186 (402)
T ss_dssp CSSCB-----CSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEEC----TTTCCSCEEEEEECT
T ss_pred Ccccc-----CCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEe----cCCCCCceEEEEECC
Confidence 21100 012344678999999999999986799999999999999998765443321 124556899999999
Q ss_pred CCCeEEEEeCCCcEEEEeCCCCCCCCCceeee-cCCCCC-eEEEEEcCCCCeEEEE---ecCCcEEEEeCCCCCCcceEe
Q 048012 310 DGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVE-KGHSDD-ITALKFSSDGRILLSR---SFDGSLKVWDLRKMKEPLKVF 384 (616)
Q Consensus 310 ~g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~-~~h~~~-V~~l~~spdg~~l~s~---s~Dg~v~lwd~~~~~~~~~~~ 384 (616)
++++|++++.||.|++||++++ ..+..+ ..|.+. +.++.|+|++++|+++ +.|+.|++||+++...++...
T Consensus 187 ~~~~l~~~~~d~~i~iwd~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~ 262 (402)
T 2aq5_A 187 DGALICTSCRDKRVRVIEPRKG----TVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQ 262 (402)
T ss_dssp TSSCEEEEETTSEEEEEETTTT----EEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEE
T ss_pred CCCEEEEEecCCcEEEEeCCCC----ceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEE
Confidence 9999999999999999999976 456666 688776 8999999999999999 789999999999876655554
Q ss_pred cCCCCCCcceeEEECCCCCEEEEeeccccccCCCceEEEEeCCCCce-EEEEe-cCCCCCeEEEEEcCCCCcEEEEeccC
Q 048012 385 EDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREKLEL-VSRVG-ISPACSVVQCAWHPKLNQIFATAGDK 462 (616)
Q Consensus 385 ~~~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~~~~-~~~~~-~~~~~~v~~~~~~p~~~~l~~~~~d~ 462 (616)
. ..+...+.+++|+|++++|++++. .||.|++||+.+++. +..+. ..+...|.+++|+|++..+++ .
T Consensus 263 ~-~~~~~~v~~~~~s~~~~~l~~~g~------~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s--~-- 331 (402)
T 2aq5_A 263 E-LDTSSGVLLPFFDPDTNIVYLCGK------GDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEVN--K-- 331 (402)
T ss_dssp E-CCCCSSCEEEEEETTTTEEEEEET------TCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECCGGGSCGG--G--
T ss_pred e-ccCCCceeEEEEcCCCCEEEEEEc------CCCeEEEEEecCCCcceEeecccccCCcccceEEeccccccee--c--
Confidence 3 334456999999999999975442 699999999999883 33332 235678999999999887654 2
Q ss_pred CCCceEEEeccc
Q 048012 463 SQGGTHILYDPR 474 (616)
Q Consensus 463 ~~~~~~~v~~~~ 474 (616)
+..+++|++.
T Consensus 332 --~~~~~~~~l~ 341 (402)
T 2aq5_A 332 --CEIARFYKLH 341 (402)
T ss_dssp --TEEEEEEEEE
T ss_pred --ceeEEEEEcC
Confidence 4578899886
No 88
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=1.5e-32 Score=276.94 Aligned_cols=266 Identities=15% Similarity=0.222 Sum_probs=200.6
Q ss_pred eecCCCCCCceEEEEecCCCCeEEEEeCCCeEEEEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCC-CCCEEE
Q 048012 189 RQLEPSEGHQVRNLSWSPTSDRFLCVTGSAQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPK-TKETIL 267 (616)
Q Consensus 189 ~~~~~~~~~~v~~l~~sp~g~~l~~~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~-~~~~l~ 267 (616)
......|...|++++|+|+|++|++++.|+.|+|||+...... .+..+.+|...|++++|++. ...+|+
T Consensus 6 ~~~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~----------~~~~l~gH~~~V~~v~~~~~~~~~~l~ 75 (316)
T 3bg1_A 6 NTVDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQI----------LIADLRGHEGPVWQVAWAHPMYGNILA 75 (316)
T ss_dssp --------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEE----------EEEEEECCSSCEEEEEECCGGGSSCEE
T ss_pred eeecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcE----------EEEEEcCCCccEEEEEeCCCCCCCEEE
Confidence 3445568889999999999999999999999999998765321 13346799999999999763 246899
Q ss_pred EEeCCCCEEEEECCCccccceEEeeeccCCCCccEEEEEECCC--CCeEEEEeCCCcEEEEeCCCCCCCCCceeeecCCC
Q 048012 268 TSSEDGSLRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWDCD--GKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHS 345 (616)
Q Consensus 268 s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~--g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~h~ 345 (616)
+|+.|++|+|||+.++...... ...+|...|.+++|+|+ +.+|++|+.||+|++||++.+. .......+.+|.
T Consensus 76 s~s~D~~v~iWd~~~~~~~~~~----~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~-~~~~~~~~~~h~ 150 (316)
T 3bg1_A 76 SCSYDRKVIIWREENGTWEKSH----EHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEG-QWEVKKINNAHT 150 (316)
T ss_dssp EEETTSCEEEECCSSSCCCEEE----EECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSS-CEEECCBTTSSS
T ss_pred EEECCCEEEEEECCCCcceEEE----EccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCC-Ccceeeeecccc
Confidence 9999999999999875322111 11356668999999998 8899999999999999998641 111235567899
Q ss_pred CCeEEEEEcCC-----------------CCeEEEEecCCcEEEEeCCCCCC--cceEecCCCCCCcceeEEECCCC----
Q 048012 346 DDITALKFSSD-----------------GRILLSRSFDGSLKVWDLRKMKE--PLKVFEDLPNNYAQTNVAFSPDE---- 402 (616)
Q Consensus 346 ~~V~~l~~spd-----------------g~~l~s~s~Dg~v~lwd~~~~~~--~~~~~~~~~~~~~v~~v~fspdg---- 402 (616)
..|.+++|+|+ +++|++++.|++|+|||++.... ++..+.. |...|.+++|+|++
T Consensus 151 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~--h~~~V~~v~~sp~~~~~~ 228 (316)
T 3bg1_A 151 IGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEA--HSDWVRDVAWAPSIGLPT 228 (316)
T ss_dssp SCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBC--CSSCEEEEECCCCSSCSC
T ss_pred CCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeeccc--CCCceEEEEecCCCCCCC
Confidence 99999999997 47999999999999999975432 3334444 45669999999987
Q ss_pred CEEEEeeccccccCCCceEEEEeCCCC---c-eEEEEecCCCCCeEEEEEcCCCCcEEEEeccCCCCceEEEecccCCCC
Q 048012 403 QLFLTGTSVERESTTGGLLCFYDREKL---E-LVSRVGISPACSVVQCAWHPKLNQIFATAGDKSQGGTHILYDPRLSER 478 (616)
Q Consensus 403 ~~l~~gs~~~~~~~~dg~i~iwd~~~~---~-~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~~~~~~~v~~~~~s~~ 478 (616)
.+|++++ .|+.|+||++.+. . ....+. .+...|.+++|+|++++|++++. ++.++||+... +
T Consensus 229 ~~las~s-------~D~~v~iw~~~~~~~~~~~~~~~~-~~~~~v~~v~~sp~g~~las~~~----D~~v~lw~~~~--~ 294 (316)
T 3bg1_A 229 STIASCS-------QDGRVFIWTCDDASSNTWSPKLLH-KFNDVVWHVSWSITANILAVSGG----DNKVTLWKESV--D 294 (316)
T ss_dssp CEEEEEE-------TTCEEEEEECSSTTCCCCBCCEEE-ECSSCEEEEEECTTTCCEEEEES----SSCEEEEEECT--T
T ss_pred ceEEEEc-------CCCeEEEEEccCccccchhhhhhh-cCCCcEEEEEEcCCCCEEEEEcC----CCeEEEEEECC--C
Confidence 8899999 8999999998763 1 112222 35678999999999999998887 67899998763 3
Q ss_pred CcEEEEe
Q 048012 479 GALVCVA 485 (616)
Q Consensus 479 g~~l~s~ 485 (616)
|.+.+..
T Consensus 295 g~~~~~~ 301 (316)
T 3bg1_A 295 GQWVCIS 301 (316)
T ss_dssp SCEEEEE
T ss_pred CcEEEee
Confidence 5554443
No 89
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.3e-32 Score=306.72 Aligned_cols=264 Identities=14% Similarity=0.277 Sum_probs=210.9
Q ss_pred EEecCCcccEEEEEECCCCCEEEEEEcCCcEEEEeCCCCccccccceecCCCCCCceEEEEecCC--CCeEEEEeCCCeE
Q 048012 143 IVLKGHTKIVSALAVDHSGSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPT--SDRFLCVTGSAQA 220 (616)
Q Consensus 143 ~~l~~H~~~V~~v~~sp~g~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~--g~~l~~~s~d~~v 220 (616)
.++.+|.+.|++++|+|+|++|++|+.||+|+|||+.+... ........|...|.+++|+++ +++|++++.||.|
T Consensus 3 ~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~---~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I 79 (753)
T 3jro_A 3 VIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETH---KLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKV 79 (753)
T ss_dssp -----CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEE---EEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCE
T ss_pred eecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCC---ccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeE
Confidence 46889999999999999999999999999999999874321 122233457788999999988 9999999999999
Q ss_pred EEEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCC-CCEEEEEeCCCCEEEEECCCccccceEEeeeccCCCC
Q 048012 221 KIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKT-KETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPGR 299 (616)
Q Consensus 221 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~-~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~ 299 (616)
++||+.+.... .+..+.+|...|++++|+|+. +.+|++|+.||+|++||+.+......... ..|.
T Consensus 80 ~vwd~~~~~~~----------~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~----~~~~ 145 (753)
T 3jro_A 80 LIWKEENGRWS----------QIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIII----DAHA 145 (753)
T ss_dssp EEEEEETTEEE----------EEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEE----ECCS
T ss_pred EEEECCCCccc----------ccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEe----ecCC
Confidence 99998876421 233457899999999999982 36999999999999999987644333222 2455
Q ss_pred ccEEEEEECC-------------CCCeEEEEeCCCcEEEEeCCCCCCCCCceeeecCCCCCeEEEEEcCC---CCeEEEE
Q 048012 300 VAVTTCAWDC-------------DGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHSDDITALKFSSD---GRILLSR 363 (616)
Q Consensus 300 ~~v~~~~~sp-------------~g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~spd---g~~l~s~ 363 (616)
..|.+++|+| ++.+|++|+.||.|++||++++.........+.+|...|++++|+|+ +++|+++
T Consensus 146 ~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~ 225 (753)
T 3jro_A 146 IGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASV 225 (753)
T ss_dssp SCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEE
T ss_pred CceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEE
Confidence 5899999999 58999999999999999998763233455677899999999999999 9999999
Q ss_pred ecCCcEEEEeCCCCCCcc--eEecCCCCCCcceeEEECCCCCEEEEeeccccccCCCceEEEEeCCCCc
Q 048012 364 SFDGSLKVWDLRKMKEPL--KVFEDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREKLE 430 (616)
Q Consensus 364 s~Dg~v~lwd~~~~~~~~--~~~~~~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~~~ 430 (616)
+.||+|++||+++..... .......+...|++++|+|++++|++++ .||.|+||++.+..
T Consensus 226 s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s-------~Dg~I~vwd~~~~~ 287 (753)
T 3jro_A 226 SQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSG-------GDNKVTLWKENLEG 287 (753)
T ss_dssp ESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEEC-------SSSCEECCBCCSSS
T ss_pred ecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEc-------CCCEEEEEecCCCC
Confidence 999999999998753211 2222233556799999999999999999 89999999998543
No 90
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=1.9e-30 Score=274.48 Aligned_cols=288 Identities=18% Similarity=0.294 Sum_probs=235.2
Q ss_pred ceEEecCCcccEEEEEECCCCCEEEEEEcCCcEEEEeCCCCccccccceecCCCCCCceEEEEecCCCCeEEEEeCCCeE
Q 048012 141 NEIVLKGHTKIVSALAVDHSGSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSDRFLCVTGSAQA 220 (616)
Q Consensus 141 ~~~~l~~H~~~V~~v~~sp~g~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~s~d~~v 220 (616)
....+.+|...|++++|+ +.+|++|+.||+|++||+.++.. ......|...|.++.|+ +..|++++.|+.|
T Consensus 151 ~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~~~~-----~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i 221 (445)
T 2ovr_B 151 CLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAETGEC-----IHTLYGHTSTVRCMHLH--EKRVVSGSRDATL 221 (445)
T ss_dssp EEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTTEE-----EEEECCCSSCEEEEEEE--TTEEEEEETTSEE
T ss_pred EEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEECCcCcE-----EEEECCCCCcEEEEEec--CCEEEEEeCCCEE
Confidence 345788999999999997 67999999999999999987531 22233577789999995 5789999999999
Q ss_pred EEEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEEEECCCccccceEEeeeccCCCCc
Q 048012 221 KIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPGRV 300 (616)
Q Consensus 221 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~ 300 (616)
++||+..... +..+.+|...|.++.|. + .+|++++.|+.|++||+.+......+ ..|..
T Consensus 222 ~~wd~~~~~~------------~~~~~~~~~~v~~~~~~--~-~~l~~~~~dg~i~iwd~~~~~~~~~~------~~~~~ 280 (445)
T 2ovr_B 222 RVWDIETGQC------------LHVLMGHVAAVRCVQYD--G-RRVVSGAYDFMVKVWDPETETCLHTL------QGHTN 280 (445)
T ss_dssp EEEESSSCCE------------EEEEECCSSCEEEEEEC--S-SCEEEEETTSCEEEEEGGGTEEEEEE------CCCSS
T ss_pred EEEECCCCcE------------EEEEcCCcccEEEEEEC--C-CEEEEEcCCCEEEEEECCCCcEeEEe------cCCCC
Confidence 9999987653 22356899999999993 4 58999999999999999876544333 24555
Q ss_pred cEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCCCCCceeeecCCCCCeEEEEEcCCCCeEEEEecCCcEEEEeCCCCCCc
Q 048012 301 AVTTCAWDCDGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHSDDITALKFSSDGRILLSRSFDGSLKVWDLRKMKEP 380 (616)
Q Consensus 301 ~v~~~~~sp~g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~v~lwd~~~~~~~ 380 (616)
.|.+++| ++.+|++|+.||.|++||++++ ..+..+.+|...+.++.++ +++|++++.||.|++||++++. .
T Consensus 281 ~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~----~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~vwd~~~~~-~ 351 (445)
T 2ovr_B 281 RVYSLQF--DGIHVVSGSLDTSIRVWDVETG----NCIHTLTGHQSLTSGMELK--DNILVSGNADSTVKIWDIKTGQ-C 351 (445)
T ss_dssp CEEEEEE--CSSEEEEEETTSCEEEEETTTC----CEEEEECCCCSCEEEEEEE--TTEEEEEETTSCEEEEETTTCC-E
T ss_pred ceEEEEE--CCCEEEEEeCCCeEEEEECCCC----CEEEEEcCCcccEEEEEEe--CCEEEEEeCCCeEEEEECCCCc-E
Confidence 8999999 7899999999999999999976 5778888999999998885 6799999999999999998754 4
Q ss_pred ceEecCC-CCCCcceeEEECCCCCEEEEeeccccccCCCceEEEEeCCCCceEEEEe----cCCCCCeEEEEEcCCCCcE
Q 048012 381 LKVFEDL-PNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREKLELVSRVG----ISPACSVVQCAWHPKLNQI 455 (616)
Q Consensus 381 ~~~~~~~-~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~~~~~~~~~----~~~~~~v~~~~~~p~~~~l 455 (616)
+..+... .+...|++++|+ +.+|++|+ .||.|+|||+.+++.+..+. ..+.+.|.+++|+|++..|
T Consensus 352 ~~~~~~~~~~~~~v~~~~~~--~~~l~s~~-------~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 422 (445)
T 2ovr_B 352 LQTLQGPNKHQSAVTCLQFN--KNFVITSS-------DDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVC 422 (445)
T ss_dssp EEEECSTTSCSSCEEEEEEC--SSEEEEEE-------TTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEE
T ss_pred EEEEccCCCCCCCEEEEEEC--CCEEEEEe-------CCCeEEEEECCCCceeeeeeccccCCCCceEEEEEecCCEEEE
Confidence 5555442 355679999995 68999999 89999999999999998883 2356789999999999999
Q ss_pred EEEeccCCCCceEEEecccCC
Q 048012 456 FATAGDKSQGGTHILYDPRLS 476 (616)
Q Consensus 456 ~~~~~d~~~~~~~~v~~~~~s 476 (616)
++++.|+.....+.||++.-.
T Consensus 423 a~~~~dg~~~~~l~v~df~~~ 443 (445)
T 2ovr_B 423 AVGSRNGTEETKLLVLDFDVD 443 (445)
T ss_dssp EEECSSSSSCCEEEEEECCCC
T ss_pred EEcccCCCCccEEEEEECCCC
Confidence 999886444456888887643
No 91
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=8.7e-32 Score=279.85 Aligned_cols=288 Identities=16% Similarity=0.193 Sum_probs=222.2
Q ss_pred eecCCCCCCceEEEEecCCCCeEEEEeCCCeEEEEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCC---CC--
Q 048012 189 RQLEPSEGHQVRNLSWSPTSDRFLCVTGSAQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPK---TK-- 263 (616)
Q Consensus 189 ~~~~~~~~~~v~~l~~sp~g~~l~~~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~---~~-- 263 (616)
......|...|.+++|+| ++|++++.|+.|+||++........ ...+..+.+|...|.+++|+|+ .+
T Consensus 9 ~~~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~------~~~~~~~~~h~~~v~~~~~~~~~~~~g~~ 80 (397)
T 1sq9_A 9 ANAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENP------KDKSYSHFVHKSGLHHVDVLQAIERDAFE 80 (397)
T ss_dssp EEESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCG------GGGEEEEECCTTCEEEEEEEEEEETTTEE
T ss_pred hhhhhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccC------CCcceEEecCCCcEEEEEEecccccCCcc
Confidence 344556888999999999 8999999999999999987651000 0012334689999999999997 13
Q ss_pred -CEEEEEeCCCCEEEEECCCccccceEEeeeccCCC-----CccEEEEEEC----CCCCe-EEEEeCCCcEEEEeCCC--
Q 048012 264 -ETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPG-----RVAVTTCAWD----CDGKC-IAGGIGDGSIQVWNLKP-- 330 (616)
Q Consensus 264 -~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~-----~~~v~~~~~s----p~g~~-l~~g~~dg~I~iwd~~~-- 330 (616)
.+|++++.|+.|++||+.+............ ..+ ...|.+++|+ |++++ |++++.||.|++||++.
T Consensus 81 ~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 159 (397)
T 1sq9_A 81 LCLVATTSFSGDLLFYRITREDETKKVIFEKL-DLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFA 159 (397)
T ss_dssp EEEEEEEETTSCEEEEEEEECTTTCCEEEEEE-CCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSS
T ss_pred ccEEEEEcCCCCEEEEEccCCcccccccceee-cccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccc
Confidence 4899999999999999987654211111111 122 3589999999 99999 99999999999999987
Q ss_pred ----CCCCCCcee-----ee-------cCCCCCeEEEEEcCCCCeEEEEecCCcEEEEeCCCCCCcceEecC-CCC---C
Q 048012 331 ----GWGSRPDIH-----VE-------KGHSDDITALKFSSDGRILLSRSFDGSLKVWDLRKMKEPLKVFED-LPN---N 390 (616)
Q Consensus 331 ----~~~~~~~~~-----~~-------~~h~~~V~~l~~spdg~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~-~~~---~ 390 (616)
+ ..+. .+ ..|...|.+++|+|++ +|++++.|+.|++||+++. .++..+.. ..+ .
T Consensus 160 ~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~h~~~~ 233 (397)
T 1sq9_A 160 DESNS----LTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTL-RPLYNFESQHSMINNS 233 (397)
T ss_dssp SHHHH----TTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTT-EEEEEEECCC---CCC
T ss_pred ccccc----ceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCC-ceeEEEeccccccccC
Confidence 4 2222 44 4588999999999999 9999999999999999874 44555544 112 4
Q ss_pred CcceeEEECCCCCEEEEeeccccccCCC---ceEEEEeCCCCceEEEEecC------------CCCCeEEEEEcCCCCcE
Q 048012 391 YAQTNVAFSPDEQLFLTGTSVERESTTG---GLLCFYDREKLELVSRVGIS------------PACSVVQCAWHPKLNQI 455 (616)
Q Consensus 391 ~~v~~v~fspdg~~l~~gs~~~~~~~~d---g~i~iwd~~~~~~~~~~~~~------------~~~~v~~~~~~p~~~~l 455 (616)
..|.+++|+|++++|++++ .+ |.|++||+.+++.+..+... +...|.+++|+|++++|
T Consensus 234 ~~i~~i~~~~~~~~l~~~~-------~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 306 (397)
T 1sq9_A 234 NSIRSVKFSPQGSLLAIAH-------DSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETL 306 (397)
T ss_dssp CCEEEEEECSSTTEEEEEE-------EETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEE
T ss_pred CccceEEECCCCCEEEEEe-------cCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEE
Confidence 5699999999999999999 78 99999999999999888642 66889999999999999
Q ss_pred EEEeccC---------------CC------Cc---------------eEEEecccCCCCC----------cEEEEecCCc
Q 048012 456 FATAGDK---------------SQ------GG---------------THILYDPRLSERG----------ALVCVARAPR 489 (616)
Q Consensus 456 ~~~~~d~---------------~~------~~---------------~~~v~~~~~s~~g----------~~l~s~~~d~ 489 (616)
++++.|+ .. ++ ...|+.++|+|+| .+|++++.|+
T Consensus 307 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg 386 (397)
T 1sq9_A 307 CSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDR 386 (397)
T ss_dssp EEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTT
T ss_pred EEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCC
Confidence 9999865 11 23 4445666777888 7999999999
Q ss_pred ceecccccC
Q 048012 490 KKSVDDFEV 498 (616)
Q Consensus 490 ~~~~wd~~~ 498 (616)
.+++|++..
T Consensus 387 ~i~iw~~~~ 395 (397)
T 1sq9_A 387 SIRWFREAG 395 (397)
T ss_dssp EEEEEEEEC
T ss_pred cEEEEEcCC
Confidence 999999864
No 92
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=1e-30 Score=275.83 Aligned_cols=277 Identities=19% Similarity=0.323 Sum_probs=219.9
Q ss_pred EecCCcccEEEEEECCCCCEEEEEEcCCcEEEEeCCCCccccccceecCCCCCCceEEEEecCCCCeEEEEeCCCeEEEE
Q 048012 144 VLKGHTKIVSALAVDHSGSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSDRFLCVTGSAQAKIY 223 (616)
Q Consensus 144 ~l~~H~~~V~~v~~sp~g~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~s~d~~v~vw 223 (616)
...+|...|+|+.| ++++|++|+.||.|++||+.++. .......|...|.+++| ++++|++++.|+.|++|
T Consensus 128 ~~~~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~-----~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vw 198 (435)
T 1p22_A 128 CRSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLE-----CKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVW 198 (435)
T ss_dssp CCCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCC-----EEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEE
T ss_pred cccCCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCe-----EEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEE
Confidence 34567888999987 78999999999999999997653 22233457788999999 78899999999999999
Q ss_pred ECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEEEECCCccccceEEeeeccCCCCccEE
Q 048012 224 DRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPGRVAVT 303 (616)
Q Consensus 224 d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~ 303 (616)
|+..... +..+.+|...|.+++|++ .+|++|+.|++|++||+.+........ ...+|...|.
T Consensus 199 d~~~~~~------------~~~~~~h~~~v~~l~~~~---~~l~s~s~dg~i~vwd~~~~~~~~~~~---~~~~~~~~v~ 260 (435)
T 1p22_A 199 DVNTGEM------------LNTLIHHCEAVLHLRFNN---GMMVTCSKDRSIAVWDMASPTDITLRR---VLVGHRAAVN 260 (435)
T ss_dssp ESSSCCE------------EEEECCCCSCEEEEECCT---TEEEEEETTSCEEEEECSSSSCCEEEE---EECCCSSCEE
T ss_pred ECCCCcE------------EEEEcCCCCcEEEEEEcC---CEEEEeeCCCcEEEEeCCCCCCceeee---EecCCCCcEE
Confidence 9987654 233568999999999975 489999999999999998765442211 1235666899
Q ss_pred EEEECCCCCeEEEEeCCCcEEEEeCCCCCCCCCceeeecCCCCCeEEEEEcCCCCeEEEEecCCcEEEEeCCCCCCcceE
Q 048012 304 TCAWDCDGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHSDDITALKFSSDGRILLSRSFDGSLKVWDLRKMKEPLKV 383 (616)
Q Consensus 304 ~~~~sp~g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~v~lwd~~~~~~~~~~ 383 (616)
+++| ++++|++|+.||.|++||++++ ..+..+.+|...|.++.|+ +++|++++.||+|++||++++ .++..
T Consensus 261 ~~~~--~~~~l~s~~~dg~i~vwd~~~~----~~~~~~~~~~~~v~~~~~~--~~~l~~g~~dg~i~iwd~~~~-~~~~~ 331 (435)
T 1p22_A 261 VVDF--DDKYIVSASGDRTIKVWNTSTC----EFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECG-ACLRV 331 (435)
T ss_dssp EEEE--ETTEEEEEETTSEEEEEETTTC----CEEEEEECCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTC-CEEEE
T ss_pred EEEe--CCCEEEEEeCCCeEEEEECCcC----cEEEEEcCCCCcEEEEEeC--CCEEEEEeCCCeEEEEECCCC-CEEEE
Confidence 9999 7899999999999999999976 6788889999999999994 789999999999999999975 44556
Q ss_pred ecCCCCCCcceeEEECCCCCEEEEeeccccccCCCceEEEEeCCCCc---------eEEEEecCCCCCeEEEEEcCCCCc
Q 048012 384 FEDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREKLE---------LVSRVGISPACSVVQCAWHPKLNQ 454 (616)
Q Consensus 384 ~~~~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~~~---------~~~~~~~~~~~~v~~~~~~p~~~~ 454 (616)
+.. +...|.+++| ++.+|++|+ .||.|+|||+.++. ++..+. .|...|.+++| ++..
T Consensus 332 ~~~--h~~~v~~~~~--~~~~l~sg~-------~dg~i~vwd~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~--~~~~ 397 (435)
T 1p22_A 332 LEG--HEELVRCIRF--DNKRIVSGA-------YDGKIKVWDLVAALDPRAPAGTLCLRTLV-EHSGRVFRLQF--DEFQ 397 (435)
T ss_dssp ECC--CSSCEEEEEC--CSSEEEEEE-------TTSCEEEEEHHHHTSTTSCTTTTEEEEEC-CCSSCCCCEEE--CSSC
T ss_pred EeC--CcCcEEEEEe--cCCEEEEEe-------CCCcEEEEECCCCCCccccccchheeecc-CCCCCeEEEEe--CCCE
Confidence 655 4456999998 789999999 89999999987665 566664 35667777777 4455
Q ss_pred EEEEeccCCCCceEEEeccc
Q 048012 455 IFATAGDKSQGGTHILYDPR 474 (616)
Q Consensus 455 l~~~~~d~~~~~~~~v~~~~ 474 (616)
|++++. ++.+.+|++.
T Consensus 398 l~s~s~----Dg~i~iwd~~ 413 (435)
T 1p22_A 398 IVSSSH----DDTILIWDFL 413 (435)
T ss_dssp EEECCS----SSEEEEEC--
T ss_pred EEEEeC----CCEEEEEECC
Confidence 665554 5566666654
No 93
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=2.2e-31 Score=272.14 Aligned_cols=274 Identities=15% Similarity=0.239 Sum_probs=213.4
Q ss_pred cCCCCCCceEEEEecCCCCeEEEEe-C---CCeEEEEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCC--CC
Q 048012 191 LEPSEGHQVRNLSWSPTSDRFLCVT-G---SAQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKT--KE 264 (616)
Q Consensus 191 ~~~~~~~~v~~l~~sp~g~~l~~~s-~---d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~--~~ 264 (616)
+...|...|.+++|+|++..|++++ . |+.|+||++.+...... ...+|...|.+++|+|++ +.
T Consensus 13 ~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~-----------~~~~~~~~v~~~~~~~~~~~~~ 81 (357)
T 3i2n_A 13 IQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLL-----------REIEKAKPIKCGTFGATSLQQR 81 (357)
T ss_dssp EEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEE-----------EEEEESSCEEEEECTTCCTTTC
T ss_pred hccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccce-----------eeecccCcEEEEEEcCCCCCCc
Confidence 3345788899999999997766544 3 89999999987654221 123688999999999984 46
Q ss_pred EEEEEeCCCCEEEEECCCcc-ccceEEeeeccCCCCccEEEEE------ECCCCCeEEEEeCCCcEEEEeCCCCCCCCCc
Q 048012 265 TILTSSEDGSLRIWDVNEFK-SQKQVIKPKLARPGRVAVTTCA------WDCDGKCIAGGIGDGSIQVWNLKPGWGSRPD 337 (616)
Q Consensus 265 ~l~s~s~Dg~v~iwd~~~~~-~~~~~~~~~~~~~~~~~v~~~~------~sp~g~~l~~g~~dg~I~iwd~~~~~~~~~~ 337 (616)
+|++++.|+.|++||+.+.. ....+ ..|...|.++. |++++++|++++.||.|++||++.+. ..
T Consensus 82 ~l~~~~~dg~i~iwd~~~~~~~~~~~------~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~---~~ 152 (357)
T 3i2n_A 82 YLATGDFGGNLHIWNLEAPEMPVYSV------KGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKD---DP 152 (357)
T ss_dssp CEEEEETTSCEEEECTTSCSSCSEEE------CCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCS---SC
T ss_pred eEEEecCCCeEEEEeCCCCCccEEEE------EecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCC---Cc
Confidence 99999999999999998766 33222 24556899994 57899999999999999999998752 24
Q ss_pred eeeecCCCC----CeEEEE----EcCCCCeEEEEecCCcEEEEeCCCCCCcceEecCCCCCCcceeEEECC---CCCEEE
Q 048012 338 IHVEKGHSD----DITALK----FSSDGRILLSRSFDGSLKVWDLRKMKEPLKVFEDLPNNYAQTNVAFSP---DEQLFL 406 (616)
Q Consensus 338 ~~~~~~h~~----~V~~l~----~spdg~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~v~~v~fsp---dg~~l~ 406 (616)
+..+..|.. .|.+++ |++++++|++++.|+.|++||+++... ... .. +...|.+++|+| ++.+|+
T Consensus 153 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~-~~~-~~--~~~~v~~~~~~~~~~~~~~l~ 228 (357)
T 3i2n_A 153 VANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMAL-RWE-TN--IKNGVCSLEFDRKDISMNKLV 228 (357)
T ss_dssp SEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEE-EEE-EE--CSSCEEEEEESCSSSSCCEEE
T ss_pred ceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCce-eee-cC--CCCceEEEEcCCCCCCCCEEE
Confidence 555555544 799998 788999999999999999999987543 222 22 345699999999 999999
Q ss_pred EeeccccccCCCceEEEEeCCCCceEEEEe----cCCCCCeEEEEEcCCCC-cEEEEeccCCCCceEEEec---------
Q 048012 407 TGTSVERESTTGGLLCFYDREKLELVSRVG----ISPACSVVQCAWHPKLN-QIFATAGDKSQGGTHILYD--------- 472 (616)
Q Consensus 407 ~gs~~~~~~~~dg~i~iwd~~~~~~~~~~~----~~~~~~v~~~~~~p~~~-~l~~~~~d~~~~~~~~v~~--------- 472 (616)
+++ .+|.|++||+.+++.+..+. ..|...|.+++|+|++. .|++++. ++.+.+|+
T Consensus 229 ~~~-------~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~----dg~i~iwd~~~~~~~~~ 297 (357)
T 3i2n_A 229 ATS-------LEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGG----AGGLHLWKYEYPIQRSK 297 (357)
T ss_dssp EEE-------STTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEET----TSEEEEEEEECCSCC--
T ss_pred EEC-------CCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeC----CCcEEEeecCCCccccc
Confidence 999 89999999998876654443 14678899999999998 6777776 55666666
Q ss_pred -----------------------------ccCCCCCcEEE-EecCCcceecccccCC
Q 048012 473 -----------------------------PRLSERGALVC-VARAPRKKSVDDFEVA 499 (616)
Q Consensus 473 -----------------------------~~~s~~g~~l~-s~~~d~~~~~wd~~~~ 499 (616)
++|+|+|.+|+ +++.|+.+++|++...
T Consensus 298 ~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~ 354 (357)
T 3i2n_A 298 KDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTKL 354 (357)
T ss_dssp CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECC-
T ss_pred ccCCCCccccccccceeeccccCCCCeeEEEEcCCCCeEEEEecCCCcEEEEECCCc
Confidence 45789999888 7999999999998654
No 94
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=100.00 E-value=4.8e-31 Score=277.80 Aligned_cols=269 Identities=18% Similarity=0.287 Sum_probs=209.1
Q ss_pred eEEecCCcccEEEEEECCC-CCEEEEEEcCCcEEEEeCCCCccc------cccceecCCCCCCceEEEEecCCCC-eEEE
Q 048012 142 EIVLKGHTKIVSALAVDHS-GSRVLSGSYDYTVRMYDFQGMNSR------LQSFRQLEPSEGHQVRNLSWSPTSD-RFLC 213 (616)
Q Consensus 142 ~~~l~~H~~~V~~v~~sp~-g~~lasgs~Dg~i~iwd~~~~~~~------~~~~~~~~~~~~~~v~~l~~sp~g~-~l~~ 213 (616)
...+.+|.+.|++++|+|+ +.+||+++.||.|+||++...... .... .....|...|.+++|+|++. +|++
T Consensus 121 ~~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~-~~~~~h~~~v~~l~~~~~~~~~l~s 199 (430)
T 2xyi_A 121 IEIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPD-LRLRGHQKEGYGLSWNPNLNGYLLS 199 (430)
T ss_dssp EEEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCS-EEEECCSSCCCCEEECTTSTTEEEE
T ss_pred EEEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCc-EEecCCCCCeEEEEeCCCCCCeEEE
Confidence 4566789999999999997 689999999999999999752100 1111 22235777899999999998 9999
Q ss_pred EeCCCeEEEEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEEEECCCccccceEEeee
Q 048012 214 VTGSAQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKPK 293 (616)
Q Consensus 214 ~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~ 293 (616)
++.++.|+||++...... ...+.....+.+|...|.+++|+|++..+|++++.|+.|++||+++......+...
T Consensus 200 ~~~dg~i~vwd~~~~~~~-----~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~- 273 (430)
T 2xyi_A 200 ASDDHTICLWDINATPKE-----HRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTV- 273 (430)
T ss_dssp ECTTSCEEEEETTSCCBG-----GGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEE-
T ss_pred EeCCCeEEEEeCCCCCCC-----CceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEe-
Confidence 999999999999863210 01112234456899999999999977789999999999999999876321111111
Q ss_pred ccCCCCccEEEEEECCCCC-eEEEEeCCCcEEEEeCCCCCCCCCceeeecCCCCCeEEEEEcCCCC-eEEEEecCCcEEE
Q 048012 294 LARPGRVAVTTCAWDCDGK-CIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHSDDITALKFSSDGR-ILLSRSFDGSLKV 371 (616)
Q Consensus 294 ~~~~~~~~v~~~~~sp~g~-~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~-~l~s~s~Dg~v~l 371 (616)
..|...|++++|+|++. +|++|+.||.|++||++.. ...+..+..|...|++|+|+|+++ +|++++.|+.|+|
T Consensus 274 --~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~---~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~i 348 (430)
T 2xyi_A 274 --DAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNL---KLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHV 348 (430)
T ss_dssp --ECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCT---TSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEE
T ss_pred --ecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCC---CCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEE
Confidence 14555899999999987 6889999999999999973 256778889999999999999985 6999999999999
Q ss_pred EeCCCCCC-----------cceEecCCCCCCcceeEEECCCCC-EEEEeeccccccCCCceEEEEeCCCC
Q 048012 372 WDLRKMKE-----------PLKVFEDLPNNYAQTNVAFSPDEQ-LFLTGTSVERESTTGGLLCFYDREKL 429 (616)
Q Consensus 372 wd~~~~~~-----------~~~~~~~~~~~~~v~~v~fspdg~-~l~~gs~~~~~~~~dg~i~iwd~~~~ 429 (616)
||++.... +...+....+...|++++|+|+++ +|++++ .||.|+||++...
T Consensus 349 wd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s-------~dg~i~iw~~~~~ 411 (430)
T 2xyi_A 349 WDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVS-------EDNIMQVWQMAEN 411 (430)
T ss_dssp EEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEE-------TTSEEEEEEECHH
T ss_pred EeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEE-------CCCCEEEeEcccc
Confidence 99987332 122222233556699999999999 888888 8999999998654
No 95
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=5.8e-31 Score=274.12 Aligned_cols=308 Identities=16% Similarity=0.157 Sum_probs=225.2
Q ss_pred CCcEEEEeCCCCccccccceecCCCCCCceEEEEecC-CCCeEEEEeCCCeEEEEECCCCeeeeEee-CceeEeecccCC
Q 048012 170 DYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSP-TSDRFLCVTGSAQAKIYDRDGLTLGEFVK-GDMYIRDLKNTK 247 (616)
Q Consensus 170 Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp-~g~~l~~~s~d~~v~vwd~~~~~~~~~~~-~~~~~~~~~~~~ 247 (616)
++.+++|++... ........|...|.+++|+| ++++|++++.|+.|+|||+.......... ............
T Consensus 22 ~~~~~v~~~~~~-----~~~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (408)
T 4a11_B 22 ESTRRVLGLELN-----KDRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPD 96 (408)
T ss_dssp HHHHHHHTEEEC-----TTEEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTT
T ss_pred cCcceeeccccC-----cceeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccc
Confidence 455777776543 23344556888999999999 99999999999999999998665322111 111111122335
Q ss_pred CcccceEEEEEcCCCCCEEEEEeCCCCEEEEECCCccccceEEeeeccCCCCccEEEEEECCC---CCeEEEEeCCCcEE
Q 048012 248 GHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWDCD---GKCIAGGIGDGSIQ 324 (616)
Q Consensus 248 ~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~---g~~l~~g~~dg~I~ 324 (616)
+|...|.+++|+|++..+|++++.|+.|++||+.+......+. +...+.++.|++. +.+|++|+.||.|+
T Consensus 97 ~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 169 (408)
T 4a11_B 97 VHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFN-------FEETVYSHHMSPVSTKHCLVAVGTRGPKVQ 169 (408)
T ss_dssp CCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEE-------CSSCEEEEEECSSCSSCCEEEEEESSSSEE
T ss_pred cCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceecc-------CCCceeeeEeecCCCCCcEEEEEcCCCeEE
Confidence 7999999999999666799999999999999998865544332 2236889999884 55999999999999
Q ss_pred EEeCCCCCCCCCceeeecCCCCCeEEEEEcCCCC-eEEEEecCCcEEEEeCCCCCCcceEecC-------------CCCC
Q 048012 325 VWNLKPGWGSRPDIHVEKGHSDDITALKFSSDGR-ILLSRSFDGSLKVWDLRKMKEPLKVFED-------------LPNN 390 (616)
Q Consensus 325 iwd~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~-~l~s~s~Dg~v~lwd~~~~~~~~~~~~~-------------~~~~ 390 (616)
+||++++ ..+..+..|...|.+++|+|+++ +|++++.||.|++||+++...++..+.. ..+.
T Consensus 170 ~~d~~~~----~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (408)
T 4a11_B 170 LCDLKSG----SCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHN 245 (408)
T ss_dssp EEESSSS----CCCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCS
T ss_pred EEeCCCc----ceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeecccccccc
Confidence 9999876 56778889999999999999998 5889999999999999876655555421 2355
Q ss_pred CcceeEEECCCCCEEEEeeccccccCCCceEEEEeCCCCceEEEEecC----CCCCeEEEEEcCCCCcEEEEeccC----
Q 048012 391 YAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREKLELVSRVGIS----PACSVVQCAWHPKLNQIFATAGDK---- 462 (616)
Q Consensus 391 ~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~~~~~~~~~~~----~~~~v~~~~~~p~~~~l~~~~~d~---- 462 (616)
..|++++|+|++++|++++ .||.|++||+.+++....+... ....+...........+++++.++
T Consensus 246 ~~v~~~~~~~~~~~l~~~~-------~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v 318 (408)
T 4a11_B 246 GKVNGLCFTSDGLHLLTVG-------TDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAV 318 (408)
T ss_dssp SCEEEEEECTTSSEEEEEE-------TTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEE
T ss_pred CceeEEEEcCCCCEEEEec-------CCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEE
Confidence 6799999999999999999 8999999999988765443211 011112222222334455555421
Q ss_pred -----------CCCceEEEecccCCCCCcEEEEecCCcceecccccCCc
Q 048012 463 -----------SQGGTHILYDPRLSERGALVCVARAPRKKSVDDFEVAP 500 (616)
Q Consensus 463 -----------~~~~~~~v~~~~~s~~g~~l~s~~~d~~~~~wd~~~~~ 500 (616)
..++...|+.++|+|+|.+|++++.|+.+++|++....
T Consensus 319 ~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~ 367 (408)
T 4a11_B 319 YTVYSGEQITMLKGHYKTVDCCVFQSNFQELYSGSRDCNILAWVPSLYE 367 (408)
T ss_dssp EETTTCCEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEEECC--
T ss_pred EECcCCcceeeeccCCCeEEEEEEcCCCCEEEEECCCCeEEEEeCCCCC
Confidence 01233334447789999999999999999999997654
No 96
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=2.7e-31 Score=272.34 Aligned_cols=258 Identities=17% Similarity=0.218 Sum_probs=206.5
Q ss_pred CCcccEEEEEECCC----CCEEEEEEcCCcEEEEeCCCCccccccceecCCCCCCceEEEEecC-CCCeEEEEeCCCeEE
Q 048012 147 GHTKIVSALAVDHS----GSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSP-TSDRFLCVTGSAQAK 221 (616)
Q Consensus 147 ~H~~~V~~v~~sp~----g~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp-~g~~l~~~s~d~~v~ 221 (616)
.|...|++++|+|+ |.+|++|+.||.|+|||+.+... ......|...|.+++|+| ++.+|++++.|+.|+
T Consensus 67 ~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~-----~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~ 141 (366)
T 3k26_A 67 DADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQC-----IKHYVGHGNAINELKFHPRDPNLLLSVSKDHALR 141 (366)
T ss_dssp CTTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCE-----EEEEESCCSCEEEEEECSSCTTEEEEEETTSCEE
T ss_pred CCCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceE-----eeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEE
Confidence 47789999999999 67999999999999999986431 122235778899999999 899999999999999
Q ss_pred EEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEEEECCCccccceEEe----------
Q 048012 222 IYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIK---------- 291 (616)
Q Consensus 222 vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~---------- 291 (616)
|||+........ +..+.+|...|.+++|+|++ .+|++++.|+.|++||+.+.+....+..
T Consensus 142 iwd~~~~~~~~~---------~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~ 211 (366)
T 3k26_A 142 LWNIQTDTLVAI---------FGGVEGHRDEVLSADYDLLG-EKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTN 211 (366)
T ss_dssp EEETTTTEEEEE---------ECSTTSCSSCEEEEEECTTS-SEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCS
T ss_pred EEEeecCeEEEE---------ecccccccCceeEEEECCCC-CEEEEecCCCCEEEEECCCCccccccceeEEecCCCCc
Confidence 999987654322 33347899999999999987 5999999999999999987654322211
Q ss_pred ------------eeccCCCCccEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCC----------CCCceeeecCCCCCeE
Q 048012 292 ------------PKLARPGRVAVTTCAWDCDGKCIAGGIGDGSIQVWNLKPGWG----------SRPDIHVEKGHSDDIT 349 (616)
Q Consensus 292 ------------~~~~~~~~~~v~~~~~sp~g~~l~~g~~dg~I~iwd~~~~~~----------~~~~~~~~~~h~~~V~ 349 (616)
......+...|.+++|+ +++|++++.||.|++||+++... ....+..+..|...|+
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 289 (366)
T 3k26_A 212 RPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIW 289 (366)
T ss_dssp SCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSS
T ss_pred ccccceeeccCccccccCCcceEEEEEEc--CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEE
Confidence 01112356689999998 78999999999999999987521 0123667788999999
Q ss_pred EEEEcCC--CCeEEEEecCCcEEEEeCCCCCC---cceEecCCCCCCcceeEEECCCCCEEEEeeccccccCCCceEEEE
Q 048012 350 ALKFSSD--GRILLSRSFDGSLKVWDLRKMKE---PLKVFEDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFY 424 (616)
Q Consensus 350 ~l~~spd--g~~l~s~s~Dg~v~lwd~~~~~~---~~~~~~~~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iw 424 (616)
+++|+|+ +++|++++.||.|++||+.+... ....+..+.+...|++++|+|++++|++++ .||.|+||
T Consensus 290 ~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~-------~dg~i~iw 362 (366)
T 3k26_A 290 YMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVC-------DDASIWRW 362 (366)
T ss_dssp CCCCEECTTSSEEEEECTTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEE-------TTSEEEEE
T ss_pred EEEEcCCCCCcEEEEEecCCcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCCCeEEEEe-------CCCEEEEE
Confidence 9999999 99999999999999999987543 223455554467799999999999999999 89999999
Q ss_pred eCCC
Q 048012 425 DREK 428 (616)
Q Consensus 425 d~~~ 428 (616)
|+.+
T Consensus 363 d~~~ 366 (366)
T 3k26_A 363 DRLR 366 (366)
T ss_dssp EC--
T ss_pred EecC
Confidence 9853
No 97
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=99.98 E-value=1.6e-31 Score=274.83 Aligned_cols=258 Identities=13% Similarity=0.126 Sum_probs=194.4
Q ss_pred cceEEecCCcccEEEEEECCCCCEEEEEE-----------cCCcEEEEeCCCCccccccceecC----CCCCCceEEEEe
Q 048012 140 SNEIVLKGHTKIVSALAVDHSGSRVLSGS-----------YDYTVRMYDFQGMNSRLQSFRQLE----PSEGHQVRNLSW 204 (616)
Q Consensus 140 ~~~~~l~~H~~~V~~v~~sp~g~~lasgs-----------~Dg~i~iwd~~~~~~~~~~~~~~~----~~~~~~v~~l~~ 204 (616)
..++.|.+|...|.+++++ +..+++|+ .|+.||+|++.............. ..+...+.+++|
T Consensus 64 ~~~~~l~~~~~~v~s~~~~--~~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f 141 (365)
T 4h5i_A 64 LSEFALEDNDDSPTAIDAS--KGIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYI 141 (365)
T ss_dssp EEEEECCTTSCCCCEEEEE--TTEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEE
T ss_pred eeEEEccCCCCceEEEEeC--CCEEEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEE
Confidence 3456788999999998875 45666654 577899999876544333222221 122335899999
Q ss_pred cCCCCeEEEEe--CCCeEEEEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEEEECCC
Q 048012 205 SPTSDRFLCVT--GSAQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNE 282 (616)
Q Consensus 205 sp~g~~l~~~s--~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~ 282 (616)
||+|++|++++ .|+.|+|||+.+...... ..|...|.+++|+|++ .+|++++. +.+++|+..+
T Consensus 142 SpDg~~la~as~~~d~~i~iwd~~~~~~~~~-------------~~~~~~V~~v~fspdg-~~l~s~s~-~~~~~~~~~~ 206 (365)
T 4h5i_A 142 SREGTVAAIASSKVPAIMRIIDPSDLTEKFE-------------IETRGEVKDLHFSTDG-KVVAYITG-SSLEVISTVT 206 (365)
T ss_dssp CTTSSCEEEEESCSSCEEEEEETTTTEEEEE-------------EECSSCCCEEEECTTS-SEEEEECS-SCEEEEETTT
T ss_pred cCCCCEEEEEECCCCCEEEEeECCCCcEEEE-------------eCCCCceEEEEEccCC-ceEEeccc-eeEEEEEecc
Confidence 99999988766 579999999987764221 2366789999999988 58888875 4577777766
Q ss_pred ccccceEEeeeccCCCCccEEEEEECCCCCeEEEEeCCC----cEEEEeCCCCCCCCCceeeecCCCCCeEEEEEcCCCC
Q 048012 283 FKSQKQVIKPKLARPGRVAVTTCAWDCDGKCIAGGIGDG----SIQVWNLKPGWGSRPDIHVEKGHSDDITALKFSSDGR 358 (616)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~g~~dg----~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~ 358 (616)
+...... ....+...|.+++|+|+++++++++.|+ .|++|++............+.+|...|++|+|+|||+
T Consensus 207 ~~~~~~~----~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~ 282 (365)
T 4h5i_A 207 GSCIARK----TDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGE 282 (365)
T ss_dssp CCEEEEE----CCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSC
T ss_pred Ccceeee----ecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCC
Confidence 5433222 2234566899999999999999999887 6888998764211122345678999999999999999
Q ss_pred eEEEEecCCcEEEEeCCCCCCcceE-ecCCCCCCcceeEEECCCCCEEEEeeccccccCCCceEEEEeCCC
Q 048012 359 ILLSRSFDGSLKVWDLRKMKEPLKV-FEDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREK 428 (616)
Q Consensus 359 ~l~s~s~Dg~v~lwd~~~~~~~~~~-~~~~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~ 428 (616)
+||+|+.|++|+|||+++++. +.. +.. |...|++|+|||||++|++|+ .|++|+|||+..
T Consensus 283 ~lasgs~D~~V~iwd~~~~~~-~~~~~~g--H~~~V~~v~fSpdg~~laS~S-------~D~tvrvw~ip~ 343 (365)
T 4h5i_A 283 LAVLASNDNSIALVKLKDLSM-SKIFKQA--HSFAITEVTISPDSTYVASVS-------AANTIHIIKLPL 343 (365)
T ss_dssp EEEEEETTSCEEEEETTTTEE-EEEETTS--SSSCEEEEEECTTSCEEEEEE-------TTSEEEEEECCT
T ss_pred ceEEEcCCCEEEEEECCCCcE-EEEecCc--ccCCEEEEEECCCCCEEEEEe-------CCCeEEEEEcCC
Confidence 999999999999999997543 433 344 456699999999999999999 999999999854
No 98
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.98 E-value=6.6e-31 Score=277.72 Aligned_cols=262 Identities=14% Similarity=0.230 Sum_probs=197.5
Q ss_pred CCCceEEEEecCCCCeEEEEeCCCeEEEEECCCCeeeeEeeCceeEeecccCCCcc------------cceEEEEEcCCC
Q 048012 195 EGHQVRNLSWSPTSDRFLCVTGSAQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHI------------CGLTCGEWHPKT 262 (616)
Q Consensus 195 ~~~~v~~l~~sp~g~~l~~~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~------------~~v~~~~~~p~~ 262 (616)
+...|.+++|+|+|++|++++.|+.|+||++........... .....+..+.+|. ..|++++|+|++
T Consensus 27 ~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~-~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~ 105 (447)
T 3dw8_B 27 EADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSR-GEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQK 105 (447)
T ss_dssp GGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCC-CCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCC
T ss_pred ccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccc-cceeEecccccccccccccccccccCceEEEEEcCCC
Confidence 456799999999999999999999999999886542100000 0011233456787 889999999986
Q ss_pred C-CEEEEEeCCCCEEEEECCCccccce----------------------------------EEeeeccCCCCccEEEEEE
Q 048012 263 K-ETILTSSEDGSLRIWDVNEFKSQKQ----------------------------------VIKPKLARPGRVAVTTCAW 307 (616)
Q Consensus 263 ~-~~l~s~s~Dg~v~iwd~~~~~~~~~----------------------------------~~~~~~~~~~~~~v~~~~~ 307 (616)
. .+|++++.|++|++||+.+...... ........+|...|.+++|
T Consensus 106 ~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 185 (447)
T 3dw8_B 106 NAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISI 185 (447)
T ss_dssp SSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEE
T ss_pred CcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEE
Confidence 3 5899999999999999876432100 0000112457778999999
Q ss_pred CCCCCeEEEEeCCCcEEEEeCCCCCCCCCcee-------eecCCCCCeEEEEEcCCC-CeEEEEecCCcEEEEeCCCCCC
Q 048012 308 DCDGKCIAGGIGDGSIQVWNLKPGWGSRPDIH-------VEKGHSDDITALKFSSDG-RILLSRSFDGSLKVWDLRKMKE 379 (616)
Q Consensus 308 sp~g~~l~~g~~dg~I~iwd~~~~~~~~~~~~-------~~~~h~~~V~~l~~spdg-~~l~s~s~Dg~v~lwd~~~~~~ 379 (616)
+|++++|++| .||.|++||++... ..+. .+.+|...|++++|+|++ ++|++++.||+|+|||+++...
T Consensus 186 ~~~~~~l~s~-~d~~i~iwd~~~~~---~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~ 261 (447)
T 3dw8_B 186 NSDYETYLSA-DDLRINLWHLEITD---RSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASAL 261 (447)
T ss_dssp CTTSSEEEEE-CSSEEEEEETTEEE---EEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSS
T ss_pred cCCCCEEEEe-CCCeEEEEECCCCC---ceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCcc
Confidence 9999999999 79999999998421 2222 366899999999999998 9999999999999999997553
Q ss_pred c---ceEecCCCC----------CCcceeEEECCCCCEEEEeeccccccCCCceEEEEeCCC-CceEEEEecCCCC----
Q 048012 380 P---LKVFEDLPN----------NYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREK-LELVSRVGISPAC---- 441 (616)
Q Consensus 380 ~---~~~~~~~~~----------~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~---- 441 (616)
. +..+..+.. ...|.+++|+|++++|++++ . +.|+|||+.+ ++++..+.. |..
T Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-------~-~~v~iwd~~~~~~~~~~~~~-~~~~~~~ 332 (447)
T 3dw8_B 262 CDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRD-------Y-LSVKVWDLNMENRPVETYQV-HEYLRSK 332 (447)
T ss_dssp SCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEE-------S-SEEEEEETTCCSSCSCCEES-CGGGTTT
T ss_pred ccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEee-------C-CeEEEEeCCCCccccceeec-ccccccc
Confidence 1 455554332 02699999999999999998 7 9999999997 888777764 221
Q ss_pred -----------CeEEEEEcCCCCcEEEEeccCCCCceEEEeccc
Q 048012 442 -----------SVVQCAWHPKLNQIFATAGDKSQGGTHILYDPR 474 (616)
Q Consensus 442 -----------~v~~~~~~p~~~~l~~~~~d~~~~~~~~v~~~~ 474 (616)
.+..++|+|++.+|++++. ++.++||++.
T Consensus 333 l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~----dg~v~iwd~~ 372 (447)
T 3dw8_B 333 LCSLYENDCIFDKFECCWNGSDSVVMTGSY----NNFFRMFDRN 372 (447)
T ss_dssp HHHHHHTSGGGCCCCEEECTTSSEEEEECS----TTEEEEEETT
T ss_pred ccccccccccccceEEEECCCCCEEEEecc----CCEEEEEEcC
Confidence 1334999999999988887 7889999875
No 99
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=99.98 E-value=3.9e-30 Score=268.26 Aligned_cols=252 Identities=19% Similarity=0.266 Sum_probs=196.4
Q ss_pred CCcccEEEEEECCCCCEEEEEEcCCcEEEEeCCCCccccccceecCCCCCCceEEEEecCCCCeEEEEeCCCeEEEEECC
Q 048012 147 GHTKIVSALAVDHSGSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSDRFLCVTGSAQAKIYDRD 226 (616)
Q Consensus 147 ~H~~~V~~v~~sp~g~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~s~d~~v~vwd~~ 226 (616)
.|...|++++|+|++.+|++|+.||.|++||+.++.. ......|...|.+++| ++.+|++++.++.|++||+.
T Consensus 132 ~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~-----~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~ 204 (401)
T 4aez_A 132 DESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTK-----LRTMAGHQARVGCLSW--NRHVLSSGSRSGAIHHHDVR 204 (401)
T ss_dssp CTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCE-----EEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETT
T ss_pred CCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeE-----EEEecCCCCceEEEEE--CCCEEEEEcCCCCEEEEecc
Confidence 4899999999999999999999999999999986531 1222357778999999 56799999999999999998
Q ss_pred CCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEEEECCCccccceEEeeeccCCCCccEEEEE
Q 048012 227 GLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPGRVAVTTCA 306 (616)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~ 306 (616)
.... .+..+.+|...|.+++|+|++ .+|++++.|+.|++||+.+......+ ..+...|.+++
T Consensus 205 ~~~~-----------~~~~~~~~~~~v~~~~~~~~~-~~l~s~~~d~~v~iwd~~~~~~~~~~------~~~~~~v~~~~ 266 (401)
T 4aez_A 205 IANH-----------QIGTLQGHSSEVCGLAWRSDG-LQLASGGNDNVVQIWDARSSIPKFTK------TNHNAAVKAVA 266 (401)
T ss_dssp SSSC-----------EEEEEECCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTCSSEEEEE------CCCSSCCCEEE
T ss_pred cCcc-----------eeeEEcCCCCCeeEEEEcCCC-CEEEEEeCCCeEEEccCCCCCccEEe------cCCcceEEEEE
Confidence 4321 123356899999999999976 69999999999999999875544332 24555899999
Q ss_pred ECCCCC-eEEEEe--CCCcEEEEeCCCCCCCCCceeeecCCCCCeEEEEEcCCCCeEEEEe--cCCcEEEEeCCCCCCcc
Q 048012 307 WDCDGK-CIAGGI--GDGSIQVWNLKPGWGSRPDIHVEKGHSDDITALKFSSDGRILLSRS--FDGSLKVWDLRKMKEPL 381 (616)
Q Consensus 307 ~sp~g~-~l~~g~--~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s--~Dg~v~lwd~~~~~~~~ 381 (616)
|+|++. ++++|+ .||.|++||++++ ..+..+. |...|.+++|+|++++|++++ .||.|+|||+.+.. ..
T Consensus 267 ~~p~~~~ll~~~~gs~d~~i~i~d~~~~----~~~~~~~-~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~-~~ 340 (401)
T 4aez_A 267 WCPWQSNLLATGGGTMDKQIHFWNAATG----ARVNTVD-AGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSG-LT 340 (401)
T ss_dssp ECTTSTTEEEEECCTTTCEEEEEETTTC----CEEEEEE-CSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTE-EE
T ss_pred ECCCCCCEEEEecCCCCCEEEEEECCCC----CEEEEEe-CCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCcc-ce
Confidence 999765 555554 7999999999976 4555554 667899999999999999954 89999999998643 22
Q ss_pred eEecCCCCCCcceeEEECCCCCEEEEeeccccccCCCceEEEEeCCCCceEEEEe
Q 048012 382 KVFEDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREKLELVSRVG 436 (616)
Q Consensus 382 ~~~~~~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~~~~~~~~~ 436 (616)
.......+...|.+++|+|++++|++++ .||.|+||++.+++.+....
T Consensus 341 ~~~~~~~h~~~v~~~~~s~dg~~l~s~~-------~dg~i~iw~~~~~~~~~~~~ 388 (401)
T 4aez_A 341 KQVDIPAHDTRVLYSALSPDGRILSTAA-------SDENLKFWRVYDGDHVKRPI 388 (401)
T ss_dssp EEEEEECCSSCCCEEEECTTSSEEEEEC-------TTSEEEEEECCC--------
T ss_pred eEEEecCCCCCEEEEEECCCCCEEEEEe-------CCCcEEEEECCCCccccccc
Confidence 3322223556699999999999999999 89999999999998876653
No 100
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.98 E-value=5.3e-30 Score=262.57 Aligned_cols=243 Identities=10% Similarity=0.092 Sum_probs=178.2
Q ss_pred EecCCcccEEEEEECCCCCEEEEEEcCCcEEEEeCCCCccccccceecCCCCCCceEEEEecCCCCeEE-EEeCCCeEEE
Q 048012 144 VLKGHTKIVSALAVDHSGSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSDRFL-CVTGSAQAKI 222 (616)
Q Consensus 144 ~l~~H~~~V~~v~~sp~g~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~-~~s~d~~v~v 222 (616)
.+.+|...|++++|+|+|++|++|+.++ ++||++....... . .+...+..++|.++++.++ +++.++.|+|
T Consensus 14 ~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~----~---~~~~~~~~~~~~~~~~~~~~~~~~d~~v~i 85 (355)
T 3vu4_A 14 PENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIM----S---QEMRHLSKVRMLHRTNYVAFVTGVKEVVHI 85 (355)
T ss_dssp -----CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEE----E---EECSCCCEEEECTTSSEEEEECSSTTEEEE
T ss_pred ccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceee----e---eecCCeEEEEEcCCCCEEEEEECCccEEEE
Confidence 4578999999999999999999998775 7899987542111 1 1112477888988888874 5677899999
Q ss_pred EECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEEEECCCc-cccceEEeeeccCCCCcc
Q 048012 223 YDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEF-KSQKQVIKPKLARPGRVA 301 (616)
Q Consensus 223 wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~-~~~~~~~~~~~~~~~~~~ 301 (616)
||......... + .|...|.++.|+++ .++++ .|+.|++||+.+. +....+.. .
T Consensus 86 Wd~~~~~~~~~------------~-~~~~~v~~v~~~~~---~~~~~-~~~~i~i~d~~~~~~~~~~~~~---------~ 139 (355)
T 3vu4_A 86 WDDVKKQDVSR------------I-KVDAPVKDLFLSRE---FIVVS-YGDVISVFKFGNPWKRITDDIR---------F 139 (355)
T ss_dssp EETTTTEEEEE------------E-ECSSCEEEEEECSS---EEEEE-ETTEEEEEESSTTCCBSSCCEE---------E
T ss_pred EECCCCcEEEE------------E-ECCCceEEEEEcCC---EEEEE-EcCEEEEEECCCCceeeEEecc---------C
Confidence 99987654221 1 24568999999875 34444 3789999999886 44443322 2
Q ss_pred EEEEEECCCCCeEEE--EeCCCcEEEEeCCCCCCC------------CCceeeecCCCCCeEEEEEcCCCCeEEEEecCC
Q 048012 302 VTTCAWDCDGKCIAG--GIGDGSIQVWNLKPGWGS------------RPDIHVEKGHSDDITALKFSSDGRILLSRSFDG 367 (616)
Q Consensus 302 v~~~~~sp~g~~l~~--g~~dg~I~iwd~~~~~~~------------~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg 367 (616)
...+++++ .++++ |+.||.|++||++++... .+.+..+.+|...|++|+|+|+|++|++++.|+
T Consensus 140 ~~~~~~s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~ 217 (355)
T 3vu4_A 140 GGVCEFSN--GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDG 217 (355)
T ss_dssp EEEEEEET--TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTC
T ss_pred CceEEEEc--cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCC
Confidence 33455566 56665 588999999999874100 012677899999999999999999999999999
Q ss_pred c-EEEEeCCCCCCcceEecCCCCCCcceeEEECCCCCEEEEeeccccccCCCceEEEEeCCCCc
Q 048012 368 S-LKVWDLRKMKEPLKVFEDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREKLE 430 (616)
Q Consensus 368 ~-v~lwd~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~~~ 430 (616)
+ |+|||++++. ++..+....+...|++++|+|++++|++++ .|+.|+|||+....
T Consensus 218 ~~v~iwd~~~~~-~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s-------~d~~v~iw~~~~~~ 273 (355)
T 3vu4_A 218 TIIRVFKTEDGV-LVREFRRGLDRADVVDMKWSTDGSKLAVVS-------DKWTLHVFEIFNDQ 273 (355)
T ss_dssp SEEEEEETTTCC-EEEEEECTTCCSCEEEEEECTTSCEEEEEE-------TTCEEEEEESSCCS
T ss_pred CEEEEEECCCCc-EEEEEEcCCCCCcEEEEEECCCCCEEEEEE-------CCCEEEEEEccCCC
Confidence 9 9999999754 455554222446699999999999999999 89999999997654
No 101
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.97 E-value=3.6e-30 Score=265.34 Aligned_cols=254 Identities=14% Similarity=0.239 Sum_probs=203.1
Q ss_pred CCCCCceEEEEecCCCCeEEEEeCCCeEEEEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCC-CCEEEEEeC
Q 048012 193 PSEGHQVRNLSWSPTSDRFLCVTGSAQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKT-KETILTSSE 271 (616)
Q Consensus 193 ~~~~~~v~~l~~sp~g~~l~~~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~-~~~l~s~s~ 271 (616)
..|...|.+++|+|++++|++++.|+.|+||++..... ..+..+.+|...|++++|+++. ..+|++++.
T Consensus 8 ~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~----------~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~ 77 (379)
T 3jrp_A 8 NAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETH----------KLIDTLTGHEGPVWRVDWAHPKFGTILASCSY 77 (379)
T ss_dssp EECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEE----------EEEEEECCCSSCEEEEEECCGGGCSEEEEEET
T ss_pred cCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcc----------eeeeEecCCCCcEEEEEeCCCCCCCEEEEecc
Confidence 45778899999999999999999999999999874432 1234467899999999998761 369999999
Q ss_pred CCCEEEEECCCccccceEEeeeccCCCCccEEEEEECCC--CCeEEEEeCCCcEEEEeCCCCCCCCCceeeecCCCCCeE
Q 048012 272 DGSLRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWDCD--GKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHSDDIT 349 (616)
Q Consensus 272 Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~--g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~ 349 (616)
|+.|++||+.+++..... ....|...|.+++|+|+ +.+|++++.||.|++||++.. .......+..|...|.
T Consensus 78 dg~v~iwd~~~~~~~~~~----~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~--~~~~~~~~~~~~~~v~ 151 (379)
T 3jrp_A 78 DGKVLIWKEENGRWSQIA----VHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKEN--GTTSPIIIDAHAIGVN 151 (379)
T ss_dssp TSCEEEEEEETTEEEEEE----EECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTT--SCCCEEEEECCTTCEE
T ss_pred CCEEEEEEcCCCceeEee----eecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCC--CceeeEEecCCCCceE
Confidence 999999999875421111 11345568999999999 999999999999999999875 2344556778999999
Q ss_pred EEEEcC-------------CCCeEEEEecCCcEEEEeCCCCCCcc---eEecCCCCCCcceeEEECCC---CCEEEEeec
Q 048012 350 ALKFSS-------------DGRILLSRSFDGSLKVWDLRKMKEPL---KVFEDLPNNYAQTNVAFSPD---EQLFLTGTS 410 (616)
Q Consensus 350 ~l~~sp-------------dg~~l~s~s~Dg~v~lwd~~~~~~~~---~~~~~~~~~~~v~~v~fspd---g~~l~~gs~ 410 (616)
+++|+| ++.+|++++.|+.|++||++...... ..+. .+...|++++|+|+ +.+|++++
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~--~h~~~v~~~~~sp~~~~~~~l~s~~- 228 (379)
T 3jrp_A 152 SASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLE--GHSDWVRDVAWSPTVLLRSYLASVS- 228 (379)
T ss_dssp EEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEEC--CCSSCEEEEEECCCCSSSEEEEEEE-
T ss_pred EEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEe--cccCcEeEEEECCCCCCCCeEEEEe-
Confidence 999999 69999999999999999998755332 2333 34566999999999 89999999
Q ss_pred cccccCCCceEEEEeCCCCceE--EEEe--cCCCCCeEEEEEcCCCCcEEEEeccCCCCceEEEecccC
Q 048012 411 VERESTTGGLLCFYDREKLELV--SRVG--ISPACSVVQCAWHPKLNQIFATAGDKSQGGTHILYDPRL 475 (616)
Q Consensus 411 ~~~~~~~dg~i~iwd~~~~~~~--~~~~--~~~~~~v~~~~~~p~~~~l~~~~~d~~~~~~~~v~~~~~ 475 (616)
.||.|+|||+.++... ..+. ..+...|.+++|+|++++|++++. ++.+.+|++..
T Consensus 229 ------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~----dg~i~iw~~~~ 287 (379)
T 3jrp_A 229 ------QDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGG----DNKVTLWKENL 287 (379)
T ss_dssp ------TTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEES----SSSEEEEEEEE
T ss_pred ------CCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecC----CCcEEEEeCCC
Confidence 8999999999887422 1221 125577899999999988888887 67788888764
No 102
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.5e-29 Score=253.41 Aligned_cols=265 Identities=15% Similarity=0.175 Sum_probs=217.2
Q ss_pred CCCCCCceEEEEecCCCCeEEEEeCCCeEEEEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeC
Q 048012 192 EPSEGHQVRNLSWSPTSDRFLCVTGSAQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSE 271 (616)
Q Consensus 192 ~~~~~~~v~~l~~sp~g~~l~~~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~ 271 (616)
...|...|.+++| +++.+|++++.|+.|+|||+.+..... .+..|...|.+++|+|++ .+|++++.
T Consensus 14 l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~------------~~~~~~~~v~~~~~~~~~-~~l~~~~~ 79 (313)
T 3odt_A 14 LKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGT------------VVYTGQGFLNSVCYDSEK-ELLLFGGK 79 (313)
T ss_dssp ECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEE------------EEEECSSCEEEEEEETTT-TEEEEEET
T ss_pred hhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEE------------EeecCCccEEEEEECCCC-CEEEEecC
Confidence 3467788999999 999999999999999999998765432 245788999999999987 69999999
Q ss_pred CCCEEEEECCCccccceEEeeeccCCCCccEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCCCCCceeeecCCCCCeEEE
Q 048012 272 DGSLRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWDCDGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHSDDITAL 351 (616)
Q Consensus 272 Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l 351 (616)
|+.|++|++........+... ..|...|.+++| ++++|++++.||.|++||.. .....+..|...|.++
T Consensus 80 dg~i~~~~~~~~~~~~~~~~~---~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d~~------~~~~~~~~~~~~v~~~ 148 (313)
T 3odt_A 80 DTMINGVPLFATSGEDPLYTL---IGHQGNVCSLSF--QDGVVISGSWDKTAKVWKEG------SLVYNLQAHNASVWDA 148 (313)
T ss_dssp TSCEEEEETTCCTTSCC-CEE---CCCSSCEEEEEE--ETTEEEEEETTSEEEEEETT------EEEEEEECCSSCEEEE
T ss_pred CCeEEEEEeeecCCCCcccch---hhcccCEEEEEe--cCCEEEEEeCCCCEEEEcCC------cEEEecccCCCceeEE
Confidence 999999999875432222211 345668999999 68899999999999999922 5677888999999999
Q ss_pred EEcC-CCCeEEEEecCCcEEEEeCCCCCCcceEecCCCCCCcceeEEECCCCCEEEEeeccccccCCCceEEEEeCCCCc
Q 048012 352 KFSS-DGRILLSRSFDGSLKVWDLRKMKEPLKVFEDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREKLE 430 (616)
Q Consensus 352 ~~sp-dg~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~~~ 430 (616)
+|++ ++++|++++.|+.|++||... ....+.. .+...+.+++|+|++. |++++ .+|.|++||+.+++
T Consensus 149 ~~~~~~~~~l~~~~~d~~i~i~d~~~---~~~~~~~-~~~~~i~~~~~~~~~~-~~~~~-------~dg~i~i~d~~~~~ 216 (313)
T 3odt_A 149 KVVSFSENKFLTASADKTIKLWQNDK---VIKTFSG-IHNDVVRHLAVVDDGH-FISCS-------NDGLIKLVDMHTGD 216 (313)
T ss_dssp EEEETTTTEEEEEETTSCEEEEETTE---EEEEECS-SCSSCEEEEEEEETTE-EEEEE-------TTSEEEEEETTTCC
T ss_pred EEccCCCCEEEEEECCCCEEEEecCc---eEEEEec-cCcccEEEEEEcCCCe-EEEcc-------CCCeEEEEECCchh
Confidence 9998 999999999999999999442 3444433 2456699999999998 88888 89999999999999
Q ss_pred eEEEEecCCCCCeEEEEEcCCCCcEEEEeccCCCCceEEEec-------------------ccCCCCCcEEEEecCCcce
Q 048012 431 LVSRVGISPACSVVQCAWHPKLNQIFATAGDKSQGGTHILYD-------------------PRLSERGALVCVARAPRKK 491 (616)
Q Consensus 431 ~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~~~~~~~v~~-------------------~~~s~~g~~l~s~~~d~~~ 491 (616)
.+..+.. |...|.+++|+|++ .|++++. ++.+.+|+ +.|+++|. +++++.|+.+
T Consensus 217 ~~~~~~~-~~~~i~~~~~~~~~-~l~~~~~----dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i 289 (313)
T 3odt_A 217 VLRTYEG-HESFVYCIKLLPNG-DIVSCGE----DRTVRIWSKENGSLKQVITLPAISIWSVDCMSNGD-IIVGSSDNLV 289 (313)
T ss_dssp EEEEEEC-CSSCEEEEEECTTS-CEEEEET----TSEEEEECTTTCCEEEEEECSSSCEEEEEECTTSC-EEEEETTSCE
T ss_pred hhhhhhc-CCceEEEEEEecCC-CEEEEec----CCEEEEEECCCCceeEEEeccCceEEEEEEccCCC-EEEEeCCCcE
Confidence 9998874 67889999999998 6888887 56677776 55788998 5568899999
Q ss_pred ecccccCCc
Q 048012 492 SVDDFEVAP 500 (616)
Q Consensus 492 ~~wd~~~~~ 500 (616)
++|++....
T Consensus 290 ~iw~~~~~~ 298 (313)
T 3odt_A 290 RIFSQEKSR 298 (313)
T ss_dssp EEEESCGGG
T ss_pred EEEeCCCCc
Confidence 999986543
No 103
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1e-30 Score=266.59 Aligned_cols=270 Identities=11% Similarity=0.084 Sum_probs=194.8
Q ss_pred EECCCCCEEEEEEcCCcEEEEeCCCCccccccceecCCCCCCceEEEEecCCCCeEEEEeCCCeEEEEECCCCeeeeEee
Q 048012 156 AVDHSGSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSDRFLCVTGSAQAKIYDRDGLTLGEFVK 235 (616)
Q Consensus 156 ~~sp~g~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~s~d~~v~vwd~~~~~~~~~~~ 235 (616)
.+.+++.+|++|+.||+|++||+.++.. ...+. ...|.++.|+|. +++++.|+.|++|+..+.....-..
T Consensus 43 ~~~~d~~~l~sg~~Dg~v~iwd~~~~~~-~~~~~------~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~ 112 (343)
T 3lrv_A 43 SMYYDKWVCMCRCEDGALHFTQLKDSKT-ITTIT------TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSK 112 (343)
T ss_dssp SSSEEEEEEEEEEETTEEEEEEESSSSC-EEEEE------EECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETT
T ss_pred hhcCCCCEEEEECCCCcEEEEECCCCcE-EEEEe------cCCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecC
Confidence 3446788999999999999999987532 11111 234777888888 8999999999999887532110000
Q ss_pred CceeEeecccCCCcccceEEEEEcC--CCCCEEEEEeCCCCEEEEECCCccccceEEeeeccCCCCccEEEEEECCCCCe
Q 048012 236 GDMYIRDLKNTKGHICGLTCGEWHP--KTKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWDCDGKC 313 (616)
Q Consensus 236 ~~~~~~~~~~~~~h~~~v~~~~~~p--~~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~ 313 (616)
....+. ....+|...|.+++|+| ++ .+|++++.|++|++||+.+++...... ..+...|++++|+|+|.+
T Consensus 113 ~~~~~~--~~~~~~~~~v~~~~~~~~~~~-~~l~s~s~dg~i~~wd~~~~~~~~~~~-----~~~~~~i~~~~~~pdg~~ 184 (343)
T 3lrv_A 113 TNKVLR--EIEVDSANEIIYMYGHNEVNT-EYFIWADNRGTIGFQSYEDDSQYIVHS-----AKSDVEYSSGVLHKDSLL 184 (343)
T ss_dssp TCCEEE--EEECCCSSCEEEEECCC---C-CEEEEEETTCCEEEEESSSSCEEEEEC-----CCSSCCCCEEEECTTSCE
T ss_pred CcceeE--EeecCCCCCEEEEEcCCCCCC-CEEEEEeCCCcEEEEECCCCcEEEEEe-----cCCCCceEEEEECCCCCE
Confidence 000000 11235668899999999 77 599999999999999998766522211 123336899999999999
Q ss_pred EEEEeCCCcEEEEeCCCCCCCCCce-eeecC-CCCCeEEEEEcCCCCeEEEEecCCcEEEEeCCCCCCcceEecCC-CCC
Q 048012 314 IAGGIGDGSIQVWNLKPGWGSRPDI-HVEKG-HSDDITALKFSSDGRILLSRSFDGSLKVWDLRKMKEPLKVFEDL-PNN 390 (616)
Q Consensus 314 l~~g~~dg~I~iwd~~~~~~~~~~~-~~~~~-h~~~V~~l~~spdg~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~-~~~ 390 (616)
|++|+.||.|++||++++ ... ..+.. |...|++|+|+|++.+|++++ |++|+|||+++.... ..+..+ .+.
T Consensus 185 lasg~~dg~i~iwd~~~~----~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~-~~~~~~~~~~ 258 (343)
T 3lrv_A 185 LALYSPDGILDVYNLSSP----DQASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGT-LAYPTYTIPE 258 (343)
T ss_dssp EEEECTTSCEEEEESSCT----TSCCEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTC-BSSCCCBC--
T ss_pred EEEEcCCCEEEEEECCCC----CCCccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcc-eeeccccccc
Confidence 999999999999999986 333 55666 999999999999999999999 559999999976532 222221 011
Q ss_pred Ccc--eeEEECCCCCEEEEeeccccccCC-CceEEEEeCCCCceEEEEecCCCCCeEEEEEcC---CCCcEEEEecc
Q 048012 391 YAQ--TNVAFSPDEQLFLTGTSVERESTT-GGLLCFYDREKLELVSRVGISPACSVVQCAWHP---KLNQIFATAGD 461 (616)
Q Consensus 391 ~~v--~~v~fspdg~~l~~gs~~~~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p---~~~~l~~~~~d 461 (616)
..+ .+++|+|++++|++++ . ++.|+||++.+....... ..+..+.|++ +...|++++.|
T Consensus 259 ~~~~~~~~~~~~~g~~l~~~s-------~~d~~i~v~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~l~~~~~d 323 (343)
T 3lrv_A 259 FKTGTVTYDIDDSGKNMIAYS-------NESNSLTIYKFDKKTKNWTK-----DEESALCLQSDTADFTDMDVVCGD 323 (343)
T ss_dssp ---CCEEEEECTTSSEEEEEE-------TTTTEEEEEEECTTTCSEEE-----EEEEECCC----CCCCEEEEEEET
T ss_pred ccccceEEEECCCCCEEEEec-------CCCCcEEEEEEcccccceEe-----cCceeEecCccccccceeEEEecC
Confidence 223 3699999999999988 6 999999998766544333 3467788888 77788887773
No 104
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=99.97 E-value=6.2e-30 Score=268.50 Aligned_cols=267 Identities=18% Similarity=0.307 Sum_probs=213.6
Q ss_pred ceEEEEecCCCCeEEEEeCCCeEEEEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEE
Q 048012 198 QVRNLSWSPTSDRFLCVTGSAQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRI 277 (616)
Q Consensus 198 ~v~~l~~sp~g~~l~~~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~i 277 (616)
.+..|+||++ +.|++ +.|++|+|||..++.+... ..+.+|...|++++|+|++ .+|++|+.|++|+|
T Consensus 107 y~~~l~wS~~-n~lAv-gld~tV~lWd~~tg~~~~~----------~~~~~~~~~V~sv~fspdg-~~lasgs~Dg~v~i 173 (420)
T 4gga_A 107 YLNLVDWSSG-NVLAV-ALDNSVYLWSASSGDILQL----------LQMEQPGEYISSVAWIKEG-NYLAVGTSSAEVQL 173 (420)
T ss_dssp TCBCEEECTT-SEEEE-EETTEEEEEETTTCCEEEE----------EECCSTTCCEEEEEECTTS-SEEEEEETTSCEEE
T ss_pred cceeEEECCC-CEEEE-EeCCEEEEEECCCCCEEEE----------EEecCCCCcEEEEEECCCC-CEEEEEECCCeEEE
Confidence 4678999975 45554 5599999999998765332 2356788899999999987 59999999999999
Q ss_pred EECCCccccceEEeeeccCCCCccEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCCCCCceeeecCCCCCeEEEEEcCCC
Q 048012 278 WDVNEFKSQKQVIKPKLARPGRVAVTTCAWDCDGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHSDDITALKFSSDG 357 (616)
Q Consensus 278 wd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~spdg 357 (616)
||+.+++....+ .+|...+.+++| ++.+|++|+.|+.+++||.... ...+..+.+|...+..+.|+|++
T Consensus 174 Wd~~~~~~~~~~------~~h~~~v~~~s~--~~~~l~sgs~d~~i~~~d~~~~---~~~~~~~~~h~~~~~~~~~~~~g 242 (420)
T 4gga_A 174 WDVQQQKRLRNM------TSHSARVGSLSW--NSYILSSGSRSGHIHHHDVRVA---EHHVATLSGHSQEVCGLRWAPDG 242 (420)
T ss_dssp EETTTTEEEEEE------CCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSS---SCEEEEEECCSSCEEEEEECTTS
T ss_pred EEcCCCcEEEEE------eCCCCceEEEee--CCCEEEEEeCCCceeEeeeccc---ceeeEEecccccceeeeeecCCC
Confidence 999887654433 355667888877 4789999999999999999864 35667889999999999999999
Q ss_pred CeEEEEecCCcEEEEeCCCCCC---cceEecCCCCCCcceeEEECCCCC-EEEEeeccccccCCCceEEEEeCCCCceEE
Q 048012 358 RILLSRSFDGSLKVWDLRKMKE---PLKVFEDLPNNYAQTNVAFSPDEQ-LFLTGTSVERESTTGGLLCFYDREKLELVS 433 (616)
Q Consensus 358 ~~l~s~s~Dg~v~lwd~~~~~~---~~~~~~~~~~~~~v~~v~fspdg~-~l~~gs~~~~~~~~dg~i~iwd~~~~~~~~ 433 (616)
++|++++.|+.|+||++..... .+... ..+...|.+++|+|++. ++++++ +..|+.|+|||+.+++++.
T Consensus 243 ~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~--~~~~~~V~~~~~~p~~~~~la~~~-----gs~D~~I~iwd~~t~~~~~ 315 (420)
T 4gga_A 243 RHLASGGNDNLVNVWPSAPGEGGWVPLQTF--TQHQGAVKAVAWCPWQSNVLATGG-----GTSDRHIRIWNVCSGACLS 315 (420)
T ss_dssp SEEEEEETTSCEEEEESSCCSSCSCCSEEE--CCCSSCEEEEEECTTCTTEEEEEE-----CTTTCEEEEEETTTTEEEE
T ss_pred CeeeeeeccccceEEeeccccccceeeeee--cccCCceeeeeeCCCcccEEEEEe-----ecCCCEEEEEeCCccccce
Confidence 9999999999999999987543 22333 23556699999999765 445443 2278999999999999998
Q ss_pred EEecCCCCCeEEEEEcCCCCcEEEEecc--C---------------CCCceEEEecccCCCCCcEEEEecCCcceecccc
Q 048012 434 RVGISPACSVVQCAWHPKLNQIFATAGD--K---------------SQGGTHILYDPRLSERGALVCVARAPRKKSVDDF 496 (616)
Q Consensus 434 ~~~~~~~~~v~~~~~~p~~~~l~~~~~d--~---------------~~~~~~~v~~~~~s~~g~~l~s~~~d~~~~~wd~ 496 (616)
.+.. ...+.++.|+++++.|+++++. + +.+|...|+.++|+|+|.+|++++.|++|+|||+
T Consensus 316 ~~~~--~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv 393 (420)
T 4gga_A 316 AVDA--HSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRC 393 (420)
T ss_dssp EEEC--SSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECC
T ss_pred eecc--ccceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEEC
Confidence 8864 4679999999999999988742 2 2344445555789999999999999999999997
Q ss_pred c
Q 048012 497 E 497 (616)
Q Consensus 497 ~ 497 (616)
.
T Consensus 394 ~ 394 (420)
T 4gga_A 394 F 394 (420)
T ss_dssp S
T ss_pred C
Confidence 4
No 105
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.97 E-value=7.4e-30 Score=268.74 Aligned_cols=309 Identities=18% Similarity=0.282 Sum_probs=220.9
Q ss_pred ccEEEEEECCCC----------CEEEEEEc----CCcEEEEeCC--CC------------c-------cccccc-eecCC
Q 048012 150 KIVSALAVDHSG----------SRVLSGSY----DYTVRMYDFQ--GM------------N-------SRLQSF-RQLEP 193 (616)
Q Consensus 150 ~~V~~v~~sp~g----------~~lasgs~----Dg~i~iwd~~--~~------------~-------~~~~~~-~~~~~ 193 (616)
-+..++.|.|+. .+|+.|+. ...|.++++. .. . .....+ .....
T Consensus 46 wp~l~~~~~p~~~~~~~~~~~~~~~~~GT~t~~~~n~i~i~~~~lp~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~ 125 (430)
T 2xyi_A 46 WPSLTAQWLPDVTKQDGKDYSVHRLILGTHTSDEQNHLLIASVQLPSEDAQFDGSHYDNEKGEFGGFGSVCGKIEIEIKI 125 (430)
T ss_dssp SCCSCEEECSCCEECTTCSCEEEEEEEECCCSSSCEEEEEEEEEEC--------------------------CEEEEEEE
T ss_pred CCceEEEECcccccccCCCcceEEEEEEEcCCCCCCEEEEEEEECCCCccccccccccccccccccccCCCCceEEEEEE
Confidence 356788888864 46777765 3467777643 00 0 000011 12233
Q ss_pred CCCCceEEEEecCC-CCeEEEEeCCCeEEEEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCC
Q 048012 194 SEGHQVRNLSWSPT-SDRFLCVTGSAQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSED 272 (616)
Q Consensus 194 ~~~~~v~~l~~sp~-g~~l~~~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~D 272 (616)
.|...|.+++|+|+ +.+|++++.++.|+||++........ .......+..+.+|...|.+++|+|++..+|++|+.|
T Consensus 126 ~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~--~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d 203 (430)
T 2xyi_A 126 NHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPE--PSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDD 203 (430)
T ss_dssp EESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCC--TTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECTT
T ss_pred cCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccC--ccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeCC
Confidence 46778999999997 67899999999999999875210000 0000123445678999999999999886699999999
Q ss_pred CCEEEEECCCccccceEE-eeeccCCCCccEEEEEECC-CCCeEEEEeCCCcEEEEeCCCCCCCCCceeeecCCCCCeEE
Q 048012 273 GSLRIWDVNEFKSQKQVI-KPKLARPGRVAVTTCAWDC-DGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHSDDITA 350 (616)
Q Consensus 273 g~v~iwd~~~~~~~~~~~-~~~~~~~~~~~v~~~~~sp-~g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~ 350 (616)
|+|++||+.......... .......|...|.+++|+| ++.+|++++.||.|++||++.+. ....+..+..|...|++
T Consensus 204 g~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~-~~~~~~~~~~~~~~v~~ 282 (430)
T 2xyi_A 204 HTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNN-TSKPSHTVDAHTAEVNC 282 (430)
T ss_dssp SCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSC-SSSCSEEEECCSSCEEE
T ss_pred CeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCC-CCcceeEeecCCCCeEE
Confidence 999999998743322221 1122235666899999999 78899999999999999999752 12455667799999999
Q ss_pred EEEcCCCC-eEEEEecCCcEEEEeCCCCCCcceEecCCCCCCcceeEEECCCCC-EEEEeeccccccCCCceEEEEeCCC
Q 048012 351 LKFSSDGR-ILLSRSFDGSLKVWDLRKMKEPLKVFEDLPNNYAQTNVAFSPDEQ-LFLTGTSVERESTTGGLLCFYDREK 428 (616)
Q Consensus 351 l~~spdg~-~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~v~~v~fspdg~-~l~~gs~~~~~~~~dg~i~iwd~~~ 428 (616)
|+|+|++. +|++++.||+|+|||+++...++..+..+ ...|++++|+|+++ +|++++ .||.|+|||+..
T Consensus 283 i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h--~~~v~~i~~sp~~~~~l~s~~-------~d~~i~iwd~~~ 353 (430)
T 2xyi_A 283 LSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESH--KDEIFQVQWSPHNETILASSG-------TDRRLHVWDLSK 353 (430)
T ss_dssp EEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECC--SSCEEEEEECSSCTTEEEEEE-------TTSCCEEEEGGG
T ss_pred EEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecC--CCCEEEEEECCCCCCEEEEEe-------CCCcEEEEeCCC
Confidence 99999887 68899999999999999877777777664 45699999999995 688888 899999999987
Q ss_pred C--------------ceEEEEecCCCCCeEEEEEcCCCCcEEEEeccCCCCceEEEeccc
Q 048012 429 L--------------ELVSRVGISPACSVVQCAWHPKLNQIFATAGDKSQGGTHILYDPR 474 (616)
Q Consensus 429 ~--------------~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~~~~~~~v~~~~ 474 (616)
. +++..+. .|...|.+++|+|+++.++++++. ++.+.||++.
T Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~p~~~~~l~s~s~---dg~i~iw~~~ 409 (430)
T 2xyi_A 354 IGEEQSTEDAEDGPPELLFIHG-GHTAKISDFSWNPNEPWIICSVSE---DNIMQVWQMA 409 (430)
T ss_dssp TTCCCCHHHHHHCCTTEEEECC-CCSSCEEEEEECSSSTTEEEEEET---TSEEEEEEEC
T ss_pred CccccCccccccCCcceEEEcC-CCCCCceEEEECCCCCCEEEEEEC---CCCEEEeEcc
Confidence 2 3444433 355678888888887733333332 6667777654
No 106
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=99.97 E-value=5.5e-32 Score=285.52 Aligned_cols=308 Identities=12% Similarity=0.130 Sum_probs=229.5
Q ss_pred EECCCCCEEEEEEcCCcEEEEeCCCCccccccceecCCCCCCceEEEEecC-CCCeEEEEeCCCeEEEEECCCCeeeeEe
Q 048012 156 AVDHSGSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSP-TSDRFLCVTGSAQAKIYDRDGLTLGEFV 234 (616)
Q Consensus 156 ~~sp~g~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp-~g~~l~~~s~d~~v~vwd~~~~~~~~~~ 234 (616)
.|+|++..+++++ +|+..+. ....+...|...|.+++|+| ++.+|++++.|+.|+|||+........
T Consensus 34 ~f~~~~~~~~~~~------~w~~~g~-----~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~- 101 (437)
T 3gre_A 34 EFGPIQEIVRSPN------MGNLRGK-----LIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEV- 101 (437)
T ss_dssp GGCCCCCCCCCCC------GGGCCCC-----EEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCC-
T ss_pred hcCCccccccccc------cccccce-----EEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcc-
Confidence 3667777777655 3765431 33344456778999999999 999999999999999999865110000
Q ss_pred eCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEEEECC---CccccceEEe----eeccCC--CCccEEEE
Q 048012 235 KGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVN---EFKSQKQVIK----PKLARP--GRVAVTTC 305 (616)
Q Consensus 235 ~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~---~~~~~~~~~~----~~~~~~--~~~~v~~~ 305 (616)
.......+|...|++++|+|++ .+|++++.|++|++||+. .++....... ...... +...+.++
T Consensus 102 ------~~~~~~~~h~~~v~~~~~~~~~-~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 174 (437)
T 3gre_A 102 ------YSSSLTYDCSSTVTQITMIPNF-DAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRM 174 (437)
T ss_dssp ------CSCSEEEECSSCEEEEEECTTS-SEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEE
T ss_pred ------cceeeeccCCCCEEEEEEeCCC-CEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEE
Confidence 0001112589999999999976 699999999999999995 3322221110 011011 33456777
Q ss_pred E--ECCCCCeEEEEeCCCcEEEEeCCCCCCCCCceeeecC--CCCCeEEEEEcCCCCeEEEEecCCcEEEEeCCCCCCcc
Q 048012 306 A--WDCDGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKG--HSDDITALKFSSDGRILLSRSFDGSLKVWDLRKMKEPL 381 (616)
Q Consensus 306 ~--~sp~g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~--h~~~V~~l~~spdg~~l~s~s~Dg~v~lwd~~~~~~~~ 381 (616)
. +++++.+|++|+.||.|++||++++ ..+..+.. |...|++++|+|++++|++++.||+|+|||+++ ..++
T Consensus 175 ~~~~~~~~~~l~~~~~d~~i~iwd~~~~----~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~-~~~~ 249 (437)
T 3gre_A 175 RAFVNEEKSLLVALTNLSRVIIFDIRTL----ERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRF-NVLI 249 (437)
T ss_dssp EEEECSSCEEEEEEETTSEEEEEETTTC----CEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTT-TEEE
T ss_pred EEEEcCCCCEEEEEeCCCeEEEEeCCCC----eeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCC-ccEE
Confidence 6 6789999999999999999999976 56777777 889999999999999999999999999999997 4445
Q ss_pred eEecCCCCCCcceeEEEC----CCCCEEEEeeccccccCCCceEEEEeCCCCceEEEEecCCCCCeEEEEEcCCCCcEEE
Q 048012 382 KVFEDLPNNYAQTNVAFS----PDEQLFLTGTSVERESTTGGLLCFYDREKLELVSRVGISPACSVVQCAWHPKLNQIFA 457 (616)
Q Consensus 382 ~~~~~~~~~~~v~~v~fs----pdg~~l~~gs~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~ 457 (616)
..+. ..+...|++++|+ +++.+|++|+ .||.|+|||+.+++++..+.. +...+..+.|+|++..+..
T Consensus 250 ~~~~-~~~~~~v~~~~~~~~~s~~~~~l~s~~-------~dg~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~ 320 (437)
T 3gre_A 250 RSWS-FGDHAPITHVEVCQFYGKNSVIVVGGS-------SKTFLTIWNFVKGHCQYAFIN-SDEQPSMEHFLPIEKGLEE 320 (437)
T ss_dssp EEEB-CTTCEEEEEEEECTTTCTTEEEEEEES-------TTEEEEEEETTTTEEEEEEES-SSSCCCGGGGSCBCSSGGG
T ss_pred EEEe-cCCCCceEEEEeccccCCCccEEEEEc-------CCCcEEEEEcCCCcEEEEEEc-CCCCCccceeccccccccc
Confidence 5443 2344569999655 5688999999 899999999999999998874 5667788888888655421
Q ss_pred EeccCCCC--ceEEEecccCCCCCcEEEEecCCcceecccccCCc
Q 048012 458 TAGDKSQG--GTHILYDPRLSERGALVCVARAPRKKSVDDFEVAP 500 (616)
Q Consensus 458 ~~~d~~~~--~~~~v~~~~~s~~g~~l~s~~~d~~~~~wd~~~~~ 500 (616)
.. ..+ +...|+.++|+ ++.+|++++.|+.|++||+....
T Consensus 321 ~~---~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~ 361 (437)
T 3gre_A 321 LN---FCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNELS 361 (437)
T ss_dssp CC---CCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGG
T ss_pred ce---ecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCCcc
Confidence 11 113 55667888888 78999999999999999986554
No 107
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.97 E-value=2.4e-30 Score=269.92 Aligned_cols=259 Identities=17% Similarity=0.215 Sum_probs=205.6
Q ss_pred EecCCcccEEEEEECC-CCCEEEEEEcCCcEEEEeCCCCcccc--ccceecCCCCCCceEEEEecCCC-CeEEEEeCCCe
Q 048012 144 VLKGHTKIVSALAVDH-SGSRVLSGSYDYTVRMYDFQGMNSRL--QSFRQLEPSEGHQVRNLSWSPTS-DRFLCVTGSAQ 219 (616)
Q Consensus 144 ~l~~H~~~V~~v~~sp-~g~~lasgs~Dg~i~iwd~~~~~~~~--~~~~~~~~~~~~~v~~l~~sp~g-~~l~~~s~d~~ 219 (616)
.+.+|...|++++|+| ++.+|++|+.||+|+||++....... .........|...|.+++|+|++ .+|++++.|+.
T Consensus 76 ~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~ 155 (402)
T 2aq5_A 76 LVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNV 155 (402)
T ss_dssp CBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSC
T ss_pred eEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCE
Confidence 5789999999999999 99999999999999999998753111 01122233577889999999998 68999999999
Q ss_pred EEEEECCCCeeeeEeeCceeEeecccC--CCcccceEEEEEcCCCCCEEEEEeCCCCEEEEECCCccccceEEeeeccCC
Q 048012 220 AKIYDRDGLTLGEFVKGDMYIRDLKNT--KGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARP 297 (616)
Q Consensus 220 v~vwd~~~~~~~~~~~~~~~~~~~~~~--~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~ 297 (616)
|+|||+...... ..+ .+|...|.+++|+|++ .+|++++.|+.|++||+++++....+.. .
T Consensus 156 i~iwd~~~~~~~------------~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~-----~ 217 (402)
T 2aq5_A 156 ILVWDVGTGAAV------------LTLGPDVHPDTIYSVDWSRDG-ALICTSCRDKRVRVIEPRKGTVVAEKDR-----P 217 (402)
T ss_dssp EEEEETTTTEEE------------EEECTTTCCSCEEEEEECTTS-SCEEEEETTSEEEEEETTTTEEEEEEEC-----S
T ss_pred EEEEECCCCCcc------------EEEecCCCCCceEEEEECCCC-CEEEEEecCCcEEEEeCCCCceeeeecc-----C
Confidence 999999877542 223 6799999999999977 5899999999999999988665443311 2
Q ss_pred CCc-cEEEEEECCCCCeEEEE---eCCCcEEEEeCCCCCCCCCceeeecCCCCCeEEEEEcCCCCeEEEE-ecCCcEEEE
Q 048012 298 GRV-AVTTCAWDCDGKCIAGG---IGDGSIQVWNLKPGWGSRPDIHVEKGHSDDITALKFSSDGRILLSR-SFDGSLKVW 372 (616)
Q Consensus 298 ~~~-~v~~~~~sp~g~~l~~g---~~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~-s~Dg~v~lw 372 (616)
|.. .+.+++|+|++++|++| +.|+.|++||++++. .........|...|.+++|+|++++|+++ +.|+.|++|
T Consensus 218 ~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~--~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~ 295 (402)
T 2aq5_A 218 HEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLE--EPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYF 295 (402)
T ss_dssp SCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCS--SCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEE
T ss_pred CCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCcccc--CCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEE
Confidence 222 37899999999999999 789999999998752 22223334677889999999999999754 579999999
Q ss_pred eCCCCCCcceEecCCCCCCcceeEEECCCCCEEEEeeccccccCCCceEEEEeCCCCce
Q 048012 373 DLRKMKEPLKVFEDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREKLEL 431 (616)
Q Consensus 373 d~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~~~~ 431 (616)
|+.+....+..+..+.+...+.+++|+|++.++++ .++.+++|++.++++
T Consensus 296 d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s---------~~~~~~~~~l~~~~~ 345 (402)
T 2aq5_A 296 EITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEVN---------KCEIARFYKLHERKC 345 (402)
T ss_dssp EECSSTTCEEEEEEECCSSCCSEEEECCGGGSCGG---------GTEEEEEEEEETTEE
T ss_pred EecCCCcceEeecccccCCcccceEEeccccccee---------cceeEEEEEcCCCcE
Confidence 99986654666666556677999999999998875 357999999887653
No 108
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1e-29 Score=269.39 Aligned_cols=297 Identities=14% Similarity=0.131 Sum_probs=217.4
Q ss_pred cccEEEEEECCCCCEEEEEEcCCcEEEEeCCCCcc--cccccee------------------------------------
Q 048012 149 TKIVSALAVDHSGSRVLSGSYDYTVRMYDFQGMNS--RLQSFRQ------------------------------------ 190 (616)
Q Consensus 149 ~~~V~~v~~sp~g~~lasgs~Dg~i~iwd~~~~~~--~~~~~~~------------------------------------ 190 (616)
..+|++++|+++|++|+++ .++.|++||+.++.. .+..+..
T Consensus 4 ~~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (450)
T 2vdu_B 4 IHPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGD 82 (450)
T ss_dssp ECCCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC----------------------------------
T ss_pred cccEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCc
Confidence 3578999999999966655 578999999877541 1111110
Q ss_pred --------------cCCCCCCceEEEEecCCCCeE-EEEeCCCeEEEEECC--CCeeeeEeeCceeEeecccCCCcccce
Q 048012 191 --------------LEPSEGHQVRNLSWSPTSDRF-LCVTGSAQAKIYDRD--GLTLGEFVKGDMYIRDLKNTKGHICGL 253 (616)
Q Consensus 191 --------------~~~~~~~~v~~l~~sp~g~~l-~~~s~d~~v~vwd~~--~~~~~~~~~~~~~~~~~~~~~~h~~~v 253 (616)
..+.+...|.+++|+|++++| ++++.|+.|+||++. +....... ....|...|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~----------~~~~~~~~v 152 (450)
T 2vdu_B 83 SIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLR----------KRFCFSKRP 152 (450)
T ss_dssp -----------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEE----------EEEECSSCE
T ss_pred cccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeee----------ecccCCCCc
Confidence 001233469999999999996 788899999999988 54432211 012566889
Q ss_pred EEEEEcCCCCCEEEEEeCCCCEEEEECCCccccceEEeeeccCCCCccEEEEEECCC---CCeEEEEeCCCcEEEEeCCC
Q 048012 254 TCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWDCD---GKCIAGGIGDGSIQVWNLKP 330 (616)
Q Consensus 254 ~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~---g~~l~~g~~dg~I~iwd~~~ 330 (616)
.+++|+|++ .+|++++.++.|++|++.+......... ...+|...|++++|+|+ +++|++|+.|+.|++||+++
T Consensus 153 ~~~~~sp~~-~~l~~~~~~g~v~~~~~~~~~~~~~~~~--~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~ 229 (450)
T 2vdu_B 153 NAISIAEDD-TTVIIADKFGDVYSIDINSIPEEKFTQE--PILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQ 229 (450)
T ss_dssp EEEEECTTS-SEEEEEETTSEEEEEETTSCCCSSCCCC--CSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESC
T ss_pred eEEEEcCCC-CEEEEEeCCCcEEEEecCCcccccccce--eeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCC
Confidence 999999987 5999999999999999987654330000 11234558999999999 99999999999999999987
Q ss_pred CCCCCCceee-ecCCCCCeEEEEEcCCCCeEEEEecCCcEEEEeCCCCCCcceEecCC----------------------
Q 048012 331 GWGSRPDIHV-EKGHSDDITALKFSSDGRILLSRSFDGSLKVWDLRKMKEPLKVFEDL---------------------- 387 (616)
Q Consensus 331 ~~~~~~~~~~-~~~h~~~V~~l~~spdg~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~---------------------- 387 (616)
+ ..+.. +.+|...|++++|+ ++++|++++.|++|+|||++++. ++..+...
T Consensus 230 ~----~~~~~~~~~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (450)
T 2vdu_B 230 C----FIVDKWLFGHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGK-NLSTFDYNSLIKPYLNDQHLAPPRFQNENN 303 (450)
T ss_dssp T----TCEEEECCCCSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCC-EEEEEECHHHHGGGCCTTSBC---------
T ss_pred C----ceeeeeecCCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCc-Eeeeecchhhhhhhhhhccccccccccccc
Confidence 6 34444 66899999999999 99999999999999999999754 34443311
Q ss_pred -CCCCcceeEEECCCCCEEEEeeccccccCCCceEEEEeC--CCC---ceEEEEecCCCCCeEEEEEcCCCCcEEEEecc
Q 048012 388 -PNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDR--EKL---ELVSRVGISPACSVVQCAWHPKLNQIFATAGD 461 (616)
Q Consensus 388 -~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~--~~~---~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d 461 (616)
.....+.+++|+|++++|++++. .++.|+||++ .++ +.+..+.. + ..|.+++|+|+ ..+++....
T Consensus 304 ~~~~~~v~~i~~~~~~~~l~~~~~------~d~~i~iw~~~~~~~~~l~~~~~~~~-~-~~v~~~~~~~~-~~~v~~~~~ 374 (450)
T 2vdu_B 304 DIIEFAVSKIIKSKNLPFVAFFVE------ATKCIIILEMSEKQKGDLALKQIITF-P-YNVISLSAHND-EFQVTLDNK 374 (450)
T ss_dssp -CBCCCEEEEEECSSSSEEEEEET------TCSEEEEEEECSSSTTCEEEEEEEEC-S-SCEEEEEEETT-EEEEEECCT
T ss_pred ccceEEEEEEEEeCCCCEEEEEEC------CCCeEEEEEeccCCCCceeeccEecc-C-CceEEEEecCC-cEEEEEecc
Confidence 22345889999999999999874 5899999999 555 66666664 3 78999999995 344443331
Q ss_pred C---CCCceEEEeccc
Q 048012 462 K---SQGGTHILYDPR 474 (616)
Q Consensus 462 ~---~~~~~~~v~~~~ 474 (616)
. .....+.+|.+.
T Consensus 375 ~~~~~~~~~i~v~~~~ 390 (450)
T 2vdu_B 375 ESSGVQKNFAKFIEYN 390 (450)
T ss_dssp TCCSSCCCSEEEEEEE
T ss_pred cCCCCCCcceEEEEEE
Confidence 1 013345666654
No 109
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.97 E-value=1e-29 Score=258.08 Aligned_cols=293 Identities=10% Similarity=0.084 Sum_probs=203.8
Q ss_pred ecCCCCCCceEEEEecCCCCeEEEEeCCCeEEEEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCC-CCCEEEE
Q 048012 190 QLEPSEGHQVRNLSWSPTSDRFLCVTGSAQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPK-TKETILT 268 (616)
Q Consensus 190 ~~~~~~~~~v~~l~~sp~g~~l~~~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~-~~~~l~s 268 (616)
.+...|...|.+++|+|++++|++++.|+.|+||++...... ......+.+|...|++++|+|. +..+|++
T Consensus 5 ~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~--------~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s 76 (351)
T 3f3f_A 5 PFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSN--------WELSDSWRAHDSSIVAIDWASPEYGRIIAS 76 (351)
T ss_dssp CEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCC--------EEEEEEEECCSSCEEEEEECCGGGCSEEEE
T ss_pred ccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCc--------ceecceeccCCCcEEEEEEcCCCCCCEEEE
Confidence 344568889999999999999999999999999998854311 0123345789999999999994 2369999
Q ss_pred EeCCCCEEEEECCCccccc---eEEeeeccCCCCccEEEEEECCC--CCeEEEEeCCCcEEEEeCCCCCCCCCce-----
Q 048012 269 SSEDGSLRIWDVNEFKSQK---QVIKPKLARPGRVAVTTCAWDCD--GKCIAGGIGDGSIQVWNLKPGWGSRPDI----- 338 (616)
Q Consensus 269 ~s~Dg~v~iwd~~~~~~~~---~~~~~~~~~~~~~~v~~~~~sp~--g~~l~~g~~dg~I~iwd~~~~~~~~~~~----- 338 (616)
++.|++|++||+....... ..........|...|.+++|+|+ +++|++++.||.|++||++++.......
T Consensus 77 ~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~ 156 (351)
T 3f3f_A 77 ASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEM 156 (351)
T ss_dssp EETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEE
T ss_pred EcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccc
Confidence 9999999999998754211 00111112356668999999999 9999999999999999998763211111
Q ss_pred ----eeecCCCCCeEEEEEcCC---CCeEEEEecCCcEEEEeCCCCCC-cceEecCCCCCCcceeEEECCCC----CEEE
Q 048012 339 ----HVEKGHSDDITALKFSSD---GRILLSRSFDGSLKVWDLRKMKE-PLKVFEDLPNNYAQTNVAFSPDE----QLFL 406 (616)
Q Consensus 339 ----~~~~~h~~~V~~l~~spd---g~~l~s~s~Dg~v~lwd~~~~~~-~~~~~~~~~~~~~v~~v~fspdg----~~l~ 406 (616)
.....|...|.+++|+|+ +.+|++++.|+.+.+|+...... .+..+. .+...|++++|+|++ ++|+
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~h~~~i~~~~~~p~~~~~~~~l~ 234 (351)
T 3f3f_A 157 KVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLP--GHKSLIRSISWAPSIGRWYQLIA 234 (351)
T ss_dssp ESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECC--CCCSCEEEEEECCCSSCSSEEEE
T ss_pred cccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecC--CCCcceeEEEECCCCCCcceEEE
Confidence 011267889999999997 99999999999998887765432 133333 355679999999998 8999
Q ss_pred EeeccccccCCCceEEEEeCCCCceEEEEecCCCCCeEEEEEcCCCCcEEEEeccC-------------------CCCce
Q 048012 407 TGTSVERESTTGGLLCFYDREKLELVSRVGISPACSVVQCAWHPKLNQIFATAGDK-------------------SQGGT 467 (616)
Q Consensus 407 ~gs~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~-------------------~~~~~ 467 (616)
+++ .||.|+|||+.++........ ....+....+.+....+..+..+. ..+|.
T Consensus 235 s~~-------~dg~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 306 (351)
T 3f3f_A 235 TGC-------KDGRIRIFKITEKLSPLASEE-SLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHN 306 (351)
T ss_dssp EEE-------TTSCEEEEEEEECC----------------------------------------CCSEEEEEEEEECTTS
T ss_pred EEc-------CCCeEEEEeCCCCcCccccCC-cccceeccCCCcccccccccccccccceeeeecccccccEEEEEeccc
Confidence 999 899999999987654433321 111122222222221111111000 12556
Q ss_pred EEEecccCCCCCcEEEEecCCcceecccccCCc
Q 048012 468 HILYDPRLSERGALVCVARAPRKKSVDDFEVAP 500 (616)
Q Consensus 468 ~~v~~~~~s~~g~~l~s~~~d~~~~~wd~~~~~ 500 (616)
..|+.++|+|+|.+|++++.|+.+++|++....
T Consensus 307 ~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~ 339 (351)
T 3f3f_A 307 GEVWSVSWNLTGTILSSAGDDGKVRLWKATYSN 339 (351)
T ss_dssp SCEEEEEECSSSCCEEEEETTSCEEEEEECTTS
T ss_pred ccEEEEEEcCCCCEEEEecCCCcEEEEecCcCc
Confidence 678899999999999999999999999997654
No 110
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.97 E-value=4.9e-30 Score=268.25 Aligned_cols=278 Identities=13% Similarity=0.142 Sum_probs=204.7
Q ss_pred ecCCcccEEEEEECCCCCEEEEEEcCCcEEEEeCCCCccccccceecCCCCCCceEEEEecCCCCeEEEEeCCCeEEEEE
Q 048012 145 LKGHTKIVSALAVDHSGSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSDRFLCVTGSAQAKIYD 224 (616)
Q Consensus 145 l~~H~~~V~~v~~sp~g~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~s~d~~v~vwd 224 (616)
+.+|...|++|+|+|+| .++.+.+|+.+.. ..+...+...|.+++|||+|.+|++++.+|.|+||+
T Consensus 48 l~gh~~~v~~V~FsPdg-------~~~~~~~~~~~~~-------~~~~~~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd 113 (588)
T 2j04_A 48 INCNSKNLFHVKEFPLE-------FENKLDFELAQQN-------GLLNSQPVCYPRVCKPSPIDDWMAVLSNNGNVSVFK 113 (588)
T ss_dssp CSSBGGGTEEEEEECCC-------CCCTTTTSCCCSS-------CSSTTSCSCCEEEEEECSSSSCEEEEETTSCEEEEE
T ss_pred ecCCCccEEEEEECCCC-------CcceEEEEeCCCc-------eEeecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEe
Confidence 37999999999999999 5666666664321 111113356799999999999999999999999999
Q ss_pred CCCCeeeeEeeCceeEeecccCCCccc-----ceEEEEEcCCCCCEEEEEeCCCCEEEEECCCccccce----EEe-eec
Q 048012 225 RDGLTLGEFVKGDMYIRDLKNTKGHIC-----GLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQ----VIK-PKL 294 (616)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~h~~-----~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~~----~~~-~~~ 294 (616)
..+ . +..+. |.. .|.+++|+|++ ++|++|+.||+|+|||+.++..... +.. ...
T Consensus 114 ~~~-~-------------l~~l~-~~~~~~~~sv~svafSPDG-~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~ 177 (588)
T 2j04_A 114 DNK-M-------------LTNLD-SKGNLSSRTYHCFEWNPIE-SSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLS 177 (588)
T ss_dssp TTE-E-------------EEECC-CSSCSTTTCEEEEEECSSS-SCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECS
T ss_pred CCc-e-------------eeecc-CCCccccccEEEEEEcCCC-CEEEEEcCCCEEEEEECCCCccccccceeeeeeecc
Confidence 654 1 12223 443 59999999988 5999999999999999987542111 111 111
Q ss_pred cCCCCccEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCCCCCceeee-cCCCCCeEEEEEcCCCCeEEEEecCCcEEEEe
Q 048012 295 ARPGRVAVTTCAWDCDGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVE-KGHSDDITALKFSSDGRILLSRSFDGSLKVWD 373 (616)
Q Consensus 295 ~~~~~~~v~~~~~sp~g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~-~~h~~~V~~l~~spdg~~l~s~s~Dg~v~lwd 373 (616)
..+|...|.+++|+|+| |++++.|++|++||+..+. .......+ .+|...|.+|+|+ |++||+++ +++|++||
T Consensus 178 ~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~-~~~~~~tL~~~h~~~V~svaFs--g~~LASa~-~~tIkLWd 251 (588)
T 2j04_A 178 DAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASS-HQPVSRMIQNASRRKITDLKIV--DYKVVLTC-PGYVHKID 251 (588)
T ss_dssp CTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSS-SCCCEEEEECCCSSCCCCEEEE--TTEEEEEC-SSEEEEEE
T ss_pred cccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCc-cccceeeecccccCcEEEEEEE--CCEEEEEe-CCeEEEEE
Confidence 23466789999999999 8888899999999998752 11123345 4888999999999 68999987 69999999
Q ss_pred CCCCCCcceEecCCCCCCcceeEEE--CCCCCEEEEeeccccccCCCceEEEEeCCCCceEEEEecCCCCCeEEEEEcCC
Q 048012 374 LRKMKEPLKVFEDLPNNYAQTNVAF--SPDEQLFLTGTSVERESTTGGLLCFYDREKLELVSRVGISPACSVVQCAWHPK 451 (616)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~v~~v~f--spdg~~l~~gs~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~ 451 (616)
+..... ..+. ..+...+..++| +|++..|+++. .+|. ++|.... ++++|+
T Consensus 252 ~~~~~~--~~~~-~gh~~~V~~va~~~s~d~~~La~a~-------edG~-klw~~d~-----------------~~~spd 303 (588)
T 2j04_A 252 LKNYSI--SSLK-TGSLENFHIIPLNHEKESTILLMSN-------KTSY-KVLLEDE-----------------LHVTAD 303 (588)
T ss_dssp TTTTEE--EEEE-CSCCSCCCEEEETTCSSCEEEEECS-------SCEE-EEEESSS-----------------EEEECC
T ss_pred CCCCeE--EEEE-cCCCceEEEEEeeeCCCCCEEEEEc-------CCCC-EEEeecc-----------------EEECCC
Confidence 986432 1222 135566999999 99999999998 8999 9999772 224444
Q ss_pred CCcEEEEeccC-------------CCCceEEEecccCCCCCcEEEEecCC
Q 048012 452 LNQIFATAGDK-------------SQGGTHILYDPRLSERGALVCVARAP 488 (616)
Q Consensus 452 ~~~l~~~~~d~-------------~~~~~~~v~~~~~s~~g~~l~s~~~d 488 (616)
+..+++. |+ ...+...||.+++||||+.+|+++.=
T Consensus 304 ~~l~a~~--d~~v~lW~~~g~~l~~~~~~~~I~~va~SPdG~~lA~~~~i 351 (588)
T 2j04_A 304 NIIAPYL--EKKFKKWSTIWNEFNNYETTLVIHGISLSPDGYSIAIVYDM 351 (588)
T ss_dssp CSSHHHH--HHHHHHTTTTTTSSSSSCCEEEEEEEEECTTSSEEEEEEEE
T ss_pred ceEEEEc--CCEEEEEECCCCceeeeccceEEEEEEECCCCCEEEEEEec
Confidence 3333221 21 12347789999999999999988754
No 111
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.97 E-value=3.5e-29 Score=254.43 Aligned_cols=246 Identities=13% Similarity=0.150 Sum_probs=197.9
Q ss_pred CCCCCCceEEEEecCCCCeEEEEeCCCeEEEEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCC-EEEEEe
Q 048012 192 EPSEGHQVRNLSWSPTSDRFLCVTGSAQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKE-TILTSS 270 (616)
Q Consensus 192 ~~~~~~~v~~l~~sp~g~~l~~~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~-~l~s~s 270 (616)
...|...|.+++|+|++.+|++++.|+.|+||++....... .+....+|...|.+++|+|++ . +|++++
T Consensus 7 ~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~---------~~~~~~~~~~~v~~~~~~~~~-~~~l~~~~ 76 (342)
T 1yfq_A 7 EQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNV---------DLLQSLRYKHPLLCCNFIDNT-DLQIYVGT 76 (342)
T ss_dssp SSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEE---------EEEEEEECSSCEEEEEEEESS-SEEEEEEE
T ss_pred ccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccc---------cceeeeecCCceEEEEECCCC-CcEEEEEc
Confidence 34677889999999999999999999999999987654110 012234788999999999986 7 899999
Q ss_pred CCCCEEEEEC-CCccccceEEeeeccCC--CCccEEEEEECCCCCeEEEEeCCCcEEEEeCCC---------CCCCCCce
Q 048012 271 EDGSLRIWDV-NEFKSQKQVIKPKLARP--GRVAVTTCAWDCDGKCIAGGIGDGSIQVWNLKP---------GWGSRPDI 338 (616)
Q Consensus 271 ~Dg~v~iwd~-~~~~~~~~~~~~~~~~~--~~~~v~~~~~sp~g~~l~~g~~dg~I~iwd~~~---------~~~~~~~~ 338 (616)
.|+.|++||+ .+... ..+ .. |...|.+++|+| +++|++++.||.|++||+++ + ..+
T Consensus 77 ~dg~i~~wd~~~~~~~-~~~------~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~----~~~ 144 (342)
T 1yfq_A 77 VQGEILKVDLIGSPSF-QAL------TNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKN----LNS 144 (342)
T ss_dssp TTSCEEEECSSSSSSE-EEC------BSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEE----SCS
T ss_pred CCCeEEEEEeccCCce-Eec------cccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccC----Cee
Confidence 9999999999 76533 111 23 666899999999 99999999999999999885 4 334
Q ss_pred eeecCCCCCeEEEEEcCCCCeEEEEecCCcEEEEeCCC-CCCcceEecCCCCCCcceeEEECC-CCCEEEEeeccccccC
Q 048012 339 HVEKGHSDDITALKFSSDGRILLSRSFDGSLKVWDLRK-MKEPLKVFEDLPNNYAQTNVAFSP-DEQLFLTGTSVEREST 416 (616)
Q Consensus 339 ~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~v~lwd~~~-~~~~~~~~~~~~~~~~v~~v~fsp-dg~~l~~gs~~~~~~~ 416 (616)
..+. |...|.+++|++++ |++++.|+.|++||+++ ........ ...+...+.+++|+| ++++|++++
T Consensus 145 ~~~~-~~~~v~~~~~~~~~--l~~~~~d~~i~i~d~~~~~~~~~~~~-~~~~~~~i~~i~~~~~~~~~l~~~~------- 213 (342)
T 1yfq_A 145 NNTK-VKNKIFTMDTNSSR--LIVGMNNSQVQWFRLPLCEDDNGTIE-ESGLKYQIRDVALLPKEQEGYACSS------- 213 (342)
T ss_dssp SSSS-SCCCEEEEEECSSE--EEEEESTTEEEEEESSCCTTCCCEEE-ECSCSSCEEEEEECSGGGCEEEEEE-------
T ss_pred eEEe-eCCceEEEEecCCc--EEEEeCCCeEEEEECCccccccceee-ecCCCCceeEEEECCCCCCEEEEEe-------
Confidence 4444 88999999999887 99999999999999997 54433333 234556799999999 999999999
Q ss_pred CCceEEEEeCCCC------ceEEEEecCC--------CCCeEEEEEcCCCCcEEEEeccCCCCceEEEeccc
Q 048012 417 TGGLLCFYDREKL------ELVSRVGISP--------ACSVVQCAWHPKLNQIFATAGDKSQGGTHILYDPR 474 (616)
Q Consensus 417 ~dg~i~iwd~~~~------~~~~~~~~~~--------~~~v~~~~~~p~~~~l~~~~~d~~~~~~~~v~~~~ 474 (616)
.+|.|+||++... +.+..+.... ...|.+++|+|++++|++++. ++.+.+|++.
T Consensus 214 ~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~----dg~i~vwd~~ 281 (342)
T 1yfq_A 214 IDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGS----DGIISCWNLQ 281 (342)
T ss_dssp TTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEET----TSCEEEEETT
T ss_pred cCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecC----CceEEEEcCc
Confidence 8999999999887 7777776421 238999999999999999987 5667777754
No 112
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.97 E-value=2.4e-28 Score=257.10 Aligned_cols=297 Identities=10% Similarity=0.022 Sum_probs=223.7
Q ss_pred EecCCcccEEEEEECCCCCEEEEEEcCCcEEEEeCCCCccccccceecCCCCCCceEEEEecCCCCeEEEEeCCCeEEEE
Q 048012 144 VLKGHTKIVSALAVDHSGSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSDRFLCVTGSAQAKIY 223 (616)
Q Consensus 144 ~l~~H~~~V~~v~~sp~g~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~s~d~~v~vw 223 (616)
.+..| ..+.+++|+|++.++++++.|+.|++||+.++.............|...|.+++|++++.++++++.++.|++|
T Consensus 118 ~~~~~-~~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~ 196 (433)
T 3bws_A 118 RFKTG-FQPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVF 196 (433)
T ss_dssp EEECS-SCBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEE
T ss_pred EEcCC-CCceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEE
Confidence 34444 44669999998788888888999999999875422111010223566689999999999999999999999999
Q ss_pred ECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEEEECCCccccceEEeeeccCCCCccEE
Q 048012 224 DRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPGRVAVT 303 (616)
Q Consensus 224 d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~ 303 (616)
|+.+.... ..+..|...+.+++|+|++..++++++.|+.|++||+.+++....+. ....+.
T Consensus 197 d~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~-------~~~~~~ 257 (433)
T 3bws_A 197 DLKTLAYK------------ATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTD-------KIGLPR 257 (433)
T ss_dssp ETTTCCEE------------EEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECC-------CCSEEE
T ss_pred ECCCceEE------------EEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEec-------CCCCce
Confidence 99876542 22346788899999999886555677789999999998765433221 122589
Q ss_pred EEEECCCCCeEEEEe--------CCCcEEEEeCCCCCCCCCceeeecCCCCCeEEEEEcCCCCeE-EEEecCCcEEEEeC
Q 048012 304 TCAWDCDGKCIAGGI--------GDGSIQVWNLKPGWGSRPDIHVEKGHSDDITALKFSSDGRIL-LSRSFDGSLKVWDL 374 (616)
Q Consensus 304 ~~~~sp~g~~l~~g~--------~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l-~s~s~Dg~v~lwd~ 374 (616)
+++|+|+|++|++++ .||.|++||++++ ..+. ...|...+.+++|+|+++.| ++++.|+.|++||+
T Consensus 258 ~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~----~~~~-~~~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~ 332 (433)
T 3bws_A 258 GLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKE----KLID-TIGPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDL 332 (433)
T ss_dssp EEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTT----EEEE-EEEEEECEEEEEECSSTTEEEEEETTTTEEEEEET
T ss_pred EEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCC----cEEe-eccCCCCcceEEECCCCCEEEEEecCCCEEEEEEC
Confidence 999999999999888 5899999999875 2333 33566689999999999754 66689999999999
Q ss_pred CCCCCcceEecCCCCCCcceeEEECCCCCEEEEeecccc--------ccCCCceEEEEeCCCCceEEEEecCCCCCeEEE
Q 048012 375 RKMKEPLKVFEDLPNNYAQTNVAFSPDEQLFLTGTSVER--------ESTTGGLLCFYDREKLELVSRVGISPACSVVQC 446 (616)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~gs~~~~--------~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~ 446 (616)
.+.. .+..+. ....+.+++|+|++++|++++.... .+..||.|++||+.+++.+..+.. ...+..+
T Consensus 333 ~~~~-~~~~~~---~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~--~~~~~~~ 406 (433)
T 3bws_A 333 KEKK-VQKSIP---VFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEA--GNQPTGL 406 (433)
T ss_dssp TTTE-EEEEEE---CSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEEC--SSSEEEE
T ss_pred CCCc-EEEEec---CCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecC--CCCCceE
Confidence 8643 344443 3455899999999999998873110 011267999999999999888864 4578999
Q ss_pred EEcCCCCcEEEEeccCCCCceEEEeccc
Q 048012 447 AWHPKLNQIFATAGDKSQGGTHILYDPR 474 (616)
Q Consensus 447 ~~~p~~~~l~~~~~d~~~~~~~~v~~~~ 474 (616)
+|+|+++.|++++.+ ++.+.+|++.
T Consensus 407 ~~s~dg~~l~~~~~~---d~~i~v~~~~ 431 (433)
T 3bws_A 407 DVSPDNRYLVISDFL---DHQIRVYRRD 431 (433)
T ss_dssp EECTTSCEEEEEETT---TTEEEEEEET
T ss_pred EEcCCCCEEEEEECC---CCeEEEEEec
Confidence 999999999888753 6788888764
No 113
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.97 E-value=4.8e-28 Score=256.49 Aligned_cols=259 Identities=11% Similarity=0.015 Sum_probs=197.2
Q ss_pred CceEEEEecCCCCeEEEEeCCCeEEEEECCCCe---e-eeEeeCcee---------------------------------
Q 048012 197 HQVRNLSWSPTSDRFLCVTGSAQAKIYDRDGLT---L-GEFVKGDMY--------------------------------- 239 (616)
Q Consensus 197 ~~v~~l~~sp~g~~l~~~s~d~~v~vwd~~~~~---~-~~~~~~~~~--------------------------------- 239 (616)
+++.+++|+++|++|+ ++.++.|++||+.+++ . ..+......
T Consensus 5 ~p~~~v~~s~dg~~l~-~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (450)
T 2vdu_B 5 HPLQNLLTSRDGSLVF-AIIKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDS 83 (450)
T ss_dssp CCCCEEEECSSSSEEE-EEETTEEEEEEEETTTEEEEEEEEECCC-----------------------------------
T ss_pred ccEEEEEecCCCCEEE-EEeCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCcc
Confidence 4689999999999555 5567899999987665 2 222111000
Q ss_pred --------EeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEEEECC--CccccceEEeeeccCCCCccEEEEEECC
Q 048012 240 --------IRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVN--EFKSQKQVIKPKLARPGRVAVTTCAWDC 309 (616)
Q Consensus 240 --------~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~--~~~~~~~~~~~~~~~~~~~~v~~~~~sp 309 (616)
........+|...|++++|+|++..++++++.|++|+|||+. ++.....+... .+...|++++|+|
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~----~~~~~v~~~~~sp 159 (450)
T 2vdu_B 84 IKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRF----CFSKRPNAISIAE 159 (450)
T ss_dssp ----------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEE----ECSSCEEEEEECT
T ss_pred ccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecc----cCCCCceEEEEcC
Confidence 000011235666899999999986445999999999999998 65554443321 2334799999999
Q ss_pred CCCeEEEEeCCCcEEEEeCCCCCCCCCceeeecCCCCCeEEEEEcCC---CCeEEEEecCCcEEEEeCCCCCCcceEecC
Q 048012 310 DGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHSDDITALKFSSD---GRILLSRSFDGSLKVWDLRKMKEPLKVFED 386 (616)
Q Consensus 310 ~g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~spd---g~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~ 386 (616)
++++|++|+.+|.|++|++..+.........+.+|...|++|+|+|+ +++|++++.|++|+|||+++.......+..
T Consensus 160 ~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~ 239 (450)
T 2vdu_B 160 DDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFG 239 (450)
T ss_dssp TSSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCC
T ss_pred CCCEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecC
Confidence 99999999999999999998763211134467789999999999999 999999999999999999875443222333
Q ss_pred CCCCCcceeEEECCCCCEEEEeeccccccCCCceEEEEeCCCCceEEEEecC------------------------CCCC
Q 048012 387 LPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREKLELVSRVGIS------------------------PACS 442 (616)
Q Consensus 387 ~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~~~~~~~~~~~------------------------~~~~ 442 (616)
+...|++++|+ ++++|++++ .|+.|+|||+.+++++..+... ....
T Consensus 240 --h~~~v~~~~~s-d~~~l~s~~-------~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (450)
T 2vdu_B 240 --HKHFVSSICCG-KDYLLLSAG-------GDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFA 309 (450)
T ss_dssp --CSSCEEEEEEC-STTEEEEEE-------SSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCC
T ss_pred --CCCceEEEEEC-CCCEEEEEe-------CCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEE
Confidence 45669999999 999999999 8999999999999998888632 2356
Q ss_pred eEEEEEcCCCCcEEEEeccCCCCceEEEecc
Q 048012 443 VVQCAWHPKLNQIFATAGDKSQGGTHILYDP 473 (616)
Q Consensus 443 v~~~~~~p~~~~l~~~~~d~~~~~~~~v~~~ 473 (616)
|..++|+|++++|++++.+ ++.+.||++
T Consensus 310 v~~i~~~~~~~~l~~~~~~---d~~i~iw~~ 337 (450)
T 2vdu_B 310 VSKIIKSKNLPFVAFFVEA---TKCIIILEM 337 (450)
T ss_dssp EEEEEECSSSSEEEEEETT---CSEEEEEEE
T ss_pred EEEEEEeCCCCEEEEEECC---CCeEEEEEe
Confidence 8999999999999999843 778888887
No 114
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.97 E-value=4e-28 Score=243.78 Aligned_cols=253 Identities=17% Similarity=0.237 Sum_probs=198.4
Q ss_pred eEEecCCcccEEEEEECCCCCEEEEEEcCCcEEEEeCCCCccccccceecCCCCCCceEEEEecCCCCeEEEEeCCCeEE
Q 048012 142 EIVLKGHTKIVSALAVDHSGSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSDRFLCVTGSAQAK 221 (616)
Q Consensus 142 ~~~l~~H~~~V~~v~~sp~g~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~s~d~~v~ 221 (616)
.+.+.+|...|++|+|+|++++||+|+.||+|+||++.++.. .. ....|...+.+ +++++..|++++.++.++
T Consensus 60 ~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~----~~-~~~~h~~~~~~--~~~~~~~l~s~~~~~~~~ 132 (318)
T 4ggc_A 60 LLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKR----LR-NMTSHSARVGS--LSWNSYILSSGSRSGHIH 132 (318)
T ss_dssp EEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEE----EE-EEECCSSCEEE--EEEETTEEEEEETTSEEE
T ss_pred EEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCcee----EE-EecCccceEEE--eecCCCEEEEEecCCceE
Confidence 345678999999999999999999999999999999987531 11 22234444554 555678999999999999
Q ss_pred EEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEEEECCCccccceEEeeeccCCCCcc
Q 048012 222 IYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPGRVA 301 (616)
Q Consensus 222 vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~ 301 (616)
+|+...... .+..+.+|...+.++.|++++ .+|++++.|++|++||+.+++......... ..+...
T Consensus 133 ~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~--~~~~~~ 198 (318)
T 4ggc_A 133 HHDVRVAEH-----------HVATLSGHSQEVCGLRWAPDG-RHLASGGNDNLVNVWPSAPGEGGWVPLQTF--TQHQGA 198 (318)
T ss_dssp EEETTSSSC-----------EEEEEECCSSCEEEEEECTTS-SEEEEEETTSCEEEEESSCBTTBSCCSEEE--CCCCSC
T ss_pred eeecCCCce-----------eEEEEcCccCceEEEEEcCCC-CEEEEEecCcceeEEECCCCcccccceeee--cccCCc
Confidence 999876542 133457899999999999987 599999999999999998766443332222 234457
Q ss_pred EEEEEECCCCCeE---EEEeCCCcEEEEeCCCCCCCCCceeeecCCCCCeEEEEEcCCCCeEEEEe--cCCcEEEEeCCC
Q 048012 302 VTTCAWDCDGKCI---AGGIGDGSIQVWNLKPGWGSRPDIHVEKGHSDDITALKFSSDGRILLSRS--FDGSLKVWDLRK 376 (616)
Q Consensus 302 v~~~~~sp~g~~l---~~g~~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s--~Dg~v~lwd~~~ 376 (616)
|.++++++.+..+ ++++.+++|++||.+.. .......|...+..+.|+++++.+++++ .|++|+|||+++
T Consensus 199 v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~-----~~~~~~~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~ 273 (318)
T 4ggc_A 199 VKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSG-----ACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPT 273 (318)
T ss_dssp EEEEEECTTSTTEEEEEECTTTCEEEEEETTTC-----CEEEEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTT
T ss_pred eEEEEecCCCCcEEEEEecCCCCEEEEEecccc-----cccccccceeeeeeeeecccccceEEEEEcCCCEEEEEECCC
Confidence 9999999976643 45678899999999874 3334455677899999999999888765 799999999997
Q ss_pred CCCcceEecCCCCCCcceeEEECCCCCEEEEeeccccccCCCceEEEEeCCCCc
Q 048012 377 MKEPLKVFEDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREKLE 430 (616)
Q Consensus 377 ~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~~~ 430 (616)
+ .++..+..| ...|++++|+|++++|++|+ .||.|+|||+.+..
T Consensus 274 ~-~~~~~l~gH--~~~V~~l~~spdg~~l~S~s-------~D~~v~iWd~~~~d 317 (318)
T 4ggc_A 274 M-AKVAELKGH--TSRVLSLTMSPDGATVASAA-------ADETLRLWRCFELD 317 (318)
T ss_dssp C-CEEEEECCC--SSCEEEEEECTTSSCEEEEE-------TTTEEEEECCSCCC
T ss_pred C-cEEEEEcCC--CCCEEEEEEcCCCCEEEEEe-------cCCeEEEEECCCCC
Confidence 5 456677664 45699999999999999999 89999999987654
No 115
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.96 E-value=3.3e-29 Score=260.43 Aligned_cols=277 Identities=11% Similarity=0.049 Sum_probs=181.1
Q ss_pred EecCCcccEEEEEECCCCCEEEEEEcCCcEEEEeCCCCccccccceecCCCCCCceEEEEecC--------CCCeEEEEe
Q 048012 144 VLKGHTKIVSALAVDHSGSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSP--------TSDRFLCVT 215 (616)
Q Consensus 144 ~l~~H~~~V~~v~~sp~g~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp--------~g~~l~~~s 215 (616)
...+|...+....+.+++.+||+|+.|++|+|||+................|...|.+|+|+| ++++|++++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s 163 (393)
T 4gq1_A 84 SENLHDGDGNVNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVG 163 (393)
T ss_dssp ECC----------CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEE
T ss_pred cccccCCCcceeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEE
Confidence 445566666777777788899999999999999998754333333445567888999999998 789999999
Q ss_pred CCCeEEEEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEEEECCCccccceEEee---
Q 048012 216 GSAQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKP--- 292 (616)
Q Consensus 216 ~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~--- 292 (616)
.|++|+|||+..... +..+.+|...|.+++|+|++..+|++++.|++|++||+.+++........
T Consensus 164 ~D~tv~~Wd~~~~~~------------~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~ 231 (393)
T 4gq1_A 164 DDCTLIIWRLTDEGP------------ILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELV 231 (393)
T ss_dssp TTSEEEEEEEETTEE------------EEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------C
T ss_pred CCCeEEEEECCCCce------------eeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCc
Confidence 999999999875542 22345788899999999988778999999999999999876543222110
Q ss_pred ----------------eccCCCCccEEEEEEC-CCCCeEEEEeCCCcEEEEeCCCCCCCCCceeeecCCCCCeEEEEEcC
Q 048012 293 ----------------KLARPGRVAVTTCAWD-CDGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHSDDITALKFSS 355 (616)
Q Consensus 293 ----------------~~~~~~~~~v~~~~~s-p~g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp 355 (616)
....++...+.++.|+ ++++.|++++.|++|++||+..+ .....+..|...+..+.+.+
T Consensus 232 ~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~----~~~~~l~~~~~~~~~~~~~~ 307 (393)
T 4gq1_A 232 KNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFAN----NDYNEISDSTMKLGPKNLLP 307 (393)
T ss_dssp SCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-----------------------CCSC
T ss_pred ccceEEecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccC----CCCceEeeecCccccEEEcc
Confidence 0112445567888876 79999999999999999999876 45556667777777777776
Q ss_pred CCCeEEEEecCCcEEEEeCCCCCCcceEecCCCCCCcceeEEECCC-CCEEEEeeccccccCCCceEEEEeCCCCceEEE
Q 048012 356 DGRILLSRSFDGSLKVWDLRKMKEPLKVFEDLPNNYAQTNVAFSPD-EQLFLTGTSVERESTTGGLLCFYDREKLELVSR 434 (616)
Q Consensus 356 dg~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~v~~v~fspd-g~~l~~gs~~~~~~~~dg~i~iwd~~~~~~~~~ 434 (616)
+.+.+.. ....+..+.+.+. +.++++|+ .||.|+|||+.+++++..
T Consensus 308 ~~~~~~~--------------------------~~~~~~~~~~~~~~~~~~~sgs-------~Dg~V~lwd~~~~~~~~~ 354 (393)
T 4gq1_A 308 NVQGISL--------------------------FPSLLGACPHPRYMDYFATAHS-------QHGLIQLINTYEKDSNSI 354 (393)
T ss_dssp SEEEECS--------------------------SCCSSCCEECSSCTTEEEEEET-------TTTEEEEEETTCTTCCEE
T ss_pred ccccccc--------------------------cCcceeEEEccCCCCEEEEEEC-------CCCEEEEEECCCCcEEEE
Confidence 6432211 0111222333333 44556666 899999999999988877
Q ss_pred EecCCCCCeEEEEEcCCCCcEEEEeccCCCCceEEEeccc
Q 048012 435 VGISPACSVVQCAWHPKLNQIFATAGDKSQGGTHILYDPR 474 (616)
Q Consensus 435 ~~~~~~~~v~~~~~~p~~~~l~~~~~d~~~~~~~~v~~~~ 474 (616)
+.. +...|.+++|+|++++|++++. ++.+.++-+.
T Consensus 355 ~~~-~~~~V~svafspdG~~LA~as~----~Gv~lvrL~g 389 (393)
T 4gq1_A 355 PIQ-LGMPIVDFCWHQDGSHLAIATE----GSVLLTRLMG 389 (393)
T ss_dssp EEE-CSSCEEEEEECTTSSEEEEEES----SEEEEEEEGG
T ss_pred ecC-CCCcEEEEEEcCCCCEEEEEeC----CCeEEEEEeC
Confidence 654 6678999999999999998886 5544443333
No 116
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.96 E-value=8.9e-28 Score=253.23 Aligned_cols=261 Identities=18% Similarity=0.343 Sum_probs=196.0
Q ss_pred ceEEecCCcccEEEEEECCCCCEEEEEEcCCcEEEEeCCCCccccccceecCCCCCCceEEEEecCCCCeEEEEeCCCeE
Q 048012 141 NEIVLKGHTKIVSALAVDHSGSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSDRFLCVTGSAQA 220 (616)
Q Consensus 141 ~~~~l~~H~~~V~~v~~sp~g~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~s~d~~v 220 (616)
....+.+|...|++++| ++.+|++|+.||+|++||+.++.. ......|...|.+++|++ .+|++++.|+.|
T Consensus 165 ~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~-----~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i 235 (435)
T 1p22_A 165 CKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEM-----LNTLIHHCEAVLHLRFNN--GMMVTCSKDRSI 235 (435)
T ss_dssp EEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCE-----EEEECCCCSCEEEEECCT--TEEEEEETTSCE
T ss_pred EEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCcE-----EEEEcCCCCcEEEEEEcC--CEEEEeeCCCcE
Confidence 34578899999999999 788999999999999999987531 222335777899999974 599999999999
Q ss_pred EEEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEEEECCCccccceEEeeeccCCCCc
Q 048012 221 KIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPGRV 300 (616)
Q Consensus 221 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~ 300 (616)
++||+........ ...+.+|...|.++.|. + .+|++|+.|++|++||+.+++....+. .|..
T Consensus 236 ~vwd~~~~~~~~~---------~~~~~~~~~~v~~~~~~--~-~~l~s~~~dg~i~vwd~~~~~~~~~~~------~~~~ 297 (435)
T 1p22_A 236 AVWDMASPTDITL---------RRVLVGHRAAVNVVDFD--D-KYIVSASGDRTIKVWNTSTCEFVRTLN------GHKR 297 (435)
T ss_dssp EEEECSSSSCCEE---------EEEECCCSSCEEEEEEE--T-TEEEEEETTSEEEEEETTTCCEEEEEE------CCSS
T ss_pred EEEeCCCCCCcee---------eeEecCCCCcEEEEEeC--C-CEEEEEeCCCeEEEEECCcCcEEEEEc------CCCC
Confidence 9999986543211 23357899999999993 3 699999999999999998876554432 3455
Q ss_pred cEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCCCCCceeeecCCCCCeEEEEEcCCCCeEEEEecCCcEEEEeCCCCCC-
Q 048012 301 AVTTCAWDCDGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHSDDITALKFSSDGRILLSRSFDGSLKVWDLRKMKE- 379 (616)
Q Consensus 301 ~v~~~~~sp~g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~v~lwd~~~~~~- 379 (616)
.|.+++| ++++|++|+.||.|++||++++ ..+..+.+|...|.+++| ++++|++++.||+|++||+++...
T Consensus 298 ~v~~~~~--~~~~l~~g~~dg~i~iwd~~~~----~~~~~~~~h~~~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~ 369 (435)
T 1p22_A 298 GIACLQY--RDRLVVSGSSDNTIRLWDIECG----ACLRVLEGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLVAALDP 369 (435)
T ss_dssp CEEEEEE--ETTEEEEEETTSCEEEEETTTC----CEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEEHHHHTST
T ss_pred cEEEEEe--CCCEEEEEeCCCeEEEEECCCC----CEEEEEeCCcCcEEEEEe--cCCEEEEEeCCCcEEEEECCCCCCc
Confidence 7999998 5789999999999999999976 678888999999999999 788999999999999999975432
Q ss_pred -------cceEecCCCCCCcceeEEECCCCCEEEEeeccccccCCCceEEEEeCCCCceEEEEecCCCCCeEEEEEc
Q 048012 380 -------PLKVFEDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREKLELVSRVGISPACSVVQCAWH 449 (616)
Q Consensus 380 -------~~~~~~~~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~ 449 (616)
++..+.. +...|++++| ++.+|++++ .||.|+|||+.+........ ...+...+.|.
T Consensus 370 ~~~~~~~~~~~~~~--h~~~v~~l~~--~~~~l~s~s-------~Dg~i~iwd~~~~~~~~~~~--~~~~~~~~~~~ 433 (435)
T 1p22_A 370 RAPAGTLCLRTLVE--HSGRVFRLQF--DEFQIVSSS-------HDDTILIWDFLNDPAAQAEP--PRSPSRTYTYI 433 (435)
T ss_dssp TSCTTTTEEEEECC--CSSCCCCEEE--CSSCEEECC-------SSSEEEEEC------------------------
T ss_pred cccccchheeeccC--CCCCeEEEEe--CCCEEEEEe-------CCCEEEEEECCCCCCcccCC--CCCCccceeee
Confidence 3444444 4556999999 788999999 89999999998876655442 22344555554
No 117
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.96 E-value=4.2e-27 Score=244.05 Aligned_cols=269 Identities=14% Similarity=0.118 Sum_probs=205.5
Q ss_pred CEEEEEEcCCcEEEEeCCCCccccccceecCCCCCCceEEEEecCCCCeE-EEEeCCCeEEEEECCCCeeeeEeeCceeE
Q 048012 162 SRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSDRF-LCVTGSAQAKIYDRDGLTLGEFVKGDMYI 240 (616)
Q Consensus 162 ~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l-~~~s~d~~v~vwd~~~~~~~~~~~~~~~~ 240 (616)
.++++++.|+.|++||+.++.. . ..+ . ....+.+++|+|++++| ++++.++.|++||+.+.++...
T Consensus 3 ~l~vs~~~d~~v~v~d~~~~~~-~---~~~-~-~~~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~------- 69 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTSNKV-T---ATI-P-VGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIAT------- 69 (391)
T ss_dssp EEEEEETTTTEEEEEETTTTEE-E---EEE-E-CSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEE-------
T ss_pred EEEEEcCCCCEEEEEECCCCeE-E---EEe-e-cCCCcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEE-------
Confidence 4688899999999999986521 1 111 1 23358999999999987 5566899999999987765322
Q ss_pred eecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEEEECCCccccceEEeeeccCCCCccEEEEEECCCCCeE-EEEeC
Q 048012 241 RDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWDCDGKCI-AGGIG 319 (616)
Q Consensus 241 ~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l-~~g~~ 319 (616)
+..+. .+.+++|+|++..++++++.++.|++||+.+++....+. +...+.+++|+|++++| ++++.
T Consensus 70 -----~~~~~-~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~-------~~~~~~~~~~s~dg~~l~~~~~~ 136 (391)
T 1l0q_A 70 -----VPAGS-SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVK-------TGKSPLGLALSPDGKKLYVTNNG 136 (391)
T ss_dssp -----EECSS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE-------CSSSEEEEEECTTSSEEEEEETT
T ss_pred -----EECCC-CccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEe-------CCCCcceEEECCCCCEEEEEeCC
Confidence 12222 899999999986555677778999999998865543332 11268999999999977 67888
Q ss_pred CCcEEEEeCCCCCCCCCceeeecCCCCCeEEEEEcCCCCeE-EEEecCCcEEEEeCCCCCCcceEecCCCCCCcceeEEE
Q 048012 320 DGSIQVWNLKPGWGSRPDIHVEKGHSDDITALKFSSDGRIL-LSRSFDGSLKVWDLRKMKEPLKVFEDLPNNYAQTNVAF 398 (616)
Q Consensus 320 dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l-~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~v~~v~f 398 (616)
++.|++||+.++ ..+..+..| ..+.+++|+|++++| ++++.++.|++||+++.. ....+. ....+.+++|
T Consensus 137 ~~~v~~~d~~~~----~~~~~~~~~-~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~-~~~~~~---~~~~~~~~~~ 207 (391)
T 1l0q_A 137 DKTVSVINTVTK----AVINTVSVG-RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNS-VIDTVK---VEAAPSGIAV 207 (391)
T ss_dssp TTEEEEEETTTT----EEEEEEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTE-EEEEEE---CSSEEEEEEE
T ss_pred CCEEEEEECCCC----cEEEEEecC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCe-EEEEEe---cCCCccceEE
Confidence 999999999876 455555555 457999999999887 567788999999998743 333333 2345889999
Q ss_pred CCCCCEEEEeeccccccCCCceEEEEeCCCCceEEEEecCCCCCeEEEEEcCCCCcEEEEeccCCCCceEEEeccc
Q 048012 399 SPDEQLFLTGTSVERESTTGGLLCFYDREKLELVSRVGISPACSVVQCAWHPKLNQIFATAGDKSQGGTHILYDPR 474 (616)
Q Consensus 399 spdg~~l~~gs~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~~~~~~~v~~~~ 474 (616)
+|++++|++++. ...++.|++||+.+++.+..+.. ...+.+++|+|+++.|++++.. ++.+.+|++.
T Consensus 208 ~~~g~~l~~~~~----~~~~~~v~~~d~~~~~~~~~~~~--~~~~~~~~~s~dg~~l~~s~~~---d~~v~v~d~~ 274 (391)
T 1l0q_A 208 NPEGTKAYVTNV----DKYFNTVSMIDTGTNKITARIPV--GPDPAGIAVTPDGKKVYVALSF---XNTVSVIDTA 274 (391)
T ss_dssp CTTSSEEEEEEE----CSSCCEEEEEETTTTEEEEEEEC--CSSEEEEEECTTSSEEEEEETT---TTEEEEEETT
T ss_pred CCCCCEEEEEec----CcCCCcEEEEECCCCeEEEEEec--CCCccEEEEccCCCEEEEEcCC---CCEEEEEECC
Confidence 999999998872 01378999999999999888865 3458999999999999777654 7889999976
No 118
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.96 E-value=1.9e-27 Score=243.63 Aligned_cols=267 Identities=16% Similarity=0.223 Sum_probs=206.7
Q ss_pred cCCCCCCceEEEEecCC---CCeEEEEeCCCeEEEEECCC-CeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEE
Q 048012 191 LEPSEGHQVRNLSWSPT---SDRFLCVTGSAQAKIYDRDG-LTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETI 266 (616)
Q Consensus 191 ~~~~~~~~v~~l~~sp~---g~~l~~~s~d~~v~vwd~~~-~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l 266 (616)
....|...|.+++|+|+ |++|++++.|+.|+|||+.. .... ...+.+|...|++++|+|++ .+|
T Consensus 34 ~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~-----------~~~~~~h~~~v~~~~~~~~~-~~l 101 (368)
T 3mmy_A 34 VTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTI-----------PKAQQMHTGPVLDVCWSDDG-SKV 101 (368)
T ss_dssp CSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEE-----------EEEEEECSSCEEEEEECTTS-SEE
T ss_pred eccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCcee-----------EEEeccccCCEEEEEECcCC-CEE
Confidence 44567888999999999 69999999999999999985 3211 12356799999999999977 599
Q ss_pred EEEeCCCCEEEEECCCccccceEEeeeccCCCCccEEEEEE--CCCCCeEEEEeCCCcEEEEeCCCCCCCCCceeeecCC
Q 048012 267 LTSSEDGSLRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAW--DCDGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGH 344 (616)
Q Consensus 267 ~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~--sp~g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~h 344 (616)
++++.|+.|++||+.+....... .|...|.+++| ++++++|++++.||.|++||++++ ..+..+..|
T Consensus 102 ~s~~~dg~v~iwd~~~~~~~~~~-------~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~----~~~~~~~~~ 170 (368)
T 3mmy_A 102 FTASCDKTAKMWDLSSNQAIQIA-------QHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSS----NPMMVLQLP 170 (368)
T ss_dssp EEEETTSEEEEEETTTTEEEEEE-------ECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCS----SCSEEEECS
T ss_pred EEEcCCCcEEEEEcCCCCceeec-------cccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCC----cEEEEEecC
Confidence 99999999999999876543311 34558999999 999999999999999999999976 455666665
Q ss_pred CCCeEEEEEcCCCCeEEEEecCCcEEEEeCCCCCCcceEecCCCCCCcceeEEECCCCCE----EEEeeccccccCCCce
Q 048012 345 SDDITALKFSSDGRILLSRSFDGSLKVWDLRKMKEPLKVFEDLPNNYAQTNVAFSPDEQL----FLTGTSVERESTTGGL 420 (616)
Q Consensus 345 ~~~V~~l~~spdg~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~----l~~gs~~~~~~~~dg~ 420 (616)
. .+.++.+. ...+++++.++.+++|+++.......... ......+.++++.++... +++++ .+|.
T Consensus 171 ~-~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~dg~ 239 (368)
T 3mmy_A 171 E-RCYCADVI--YPMAVVATAERGLIVYQLENQPSEFRRIE-SPLKHQHRCVAIFKDKQNKPTGFALGS-------IEGR 239 (368)
T ss_dssp S-CEEEEEEE--TTEEEEEEGGGCEEEEECSSSCEEEEECC-CSCSSCEEEEEEEECTTSCEEEEEEEE-------TTSE
T ss_pred C-CceEEEec--CCeeEEEeCCCcEEEEEeccccchhhhcc-ccccCCCceEEEcccCCCCCCeEEEec-------CCCc
Confidence 4 57777776 45888999999999999987654444332 223344667777666655 88988 8999
Q ss_pred EEEEeCCCC---ceEEEEecCCCC------------CeEEEEEcCCCCcEEEEeccCCCCceEEEec-------------
Q 048012 421 LCFYDREKL---ELVSRVGISPAC------------SVVQCAWHPKLNQIFATAGDKSQGGTHILYD------------- 472 (616)
Q Consensus 421 i~iwd~~~~---~~~~~~~~~~~~------------~v~~~~~~p~~~~l~~~~~d~~~~~~~~v~~------------- 472 (616)
|+|||+... ..+..+.. +.. .|.+++|+|++++|++++. ++.+.+|+
T Consensus 240 i~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~----dg~i~iwd~~~~~~~~~~~~~ 314 (368)
T 3mmy_A 240 VAIHYINPPNPAKDNFTFKC-HRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGS----DGRFSFWDKDARTKLKTSEQL 314 (368)
T ss_dssp EEEEESSCSCHHHHSEEEEC-SEEC----CCCEEECCEEEEEECTTTCCEEEEET----TSCEEEEETTTTEEEEECCCC
T ss_pred EEEEecCCCCccccceeeee-eecccccccccccccceEEEEEecCCCEEEEEcc----CCeEEEEECCCCcEEEEecCC
Confidence 999999987 45566654 222 6999999999999999998 45566665
Q ss_pred ------ccCCCCCcEEEEecCCcceecccc
Q 048012 473 ------PRLSERGALVCVARAPRKKSVDDF 496 (616)
Q Consensus 473 ------~~~s~~g~~l~s~~~d~~~~~wd~ 496 (616)
++|+|+|.+|++++.|+..+.|++
T Consensus 315 ~~~v~~~~~s~~g~~l~~~s~d~~~~~~~~ 344 (368)
T 3mmy_A 315 DQPISACCFNHNGNIFAYASSYDWSKGHEF 344 (368)
T ss_dssp SSCEEEEEECTTSSCEEEEECCCSTTCGGG
T ss_pred CCCceEEEECCCCCeEEEEecccccccccc
Confidence 667888888888888765554443
No 119
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.96 E-value=5.3e-28 Score=246.53 Aligned_cols=260 Identities=12% Similarity=0.047 Sum_probs=192.6
Q ss_pred EEecCCCCeEEEEeCCCeEEEEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEEEECC
Q 048012 202 LSWSPTSDRFLCVTGSAQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVN 281 (616)
Q Consensus 202 l~~sp~g~~l~~~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~ 281 (616)
..+.+++.+|++++.|+.|++||+......... . ...|.++.|+|. +++++.|++|++|+..
T Consensus 42 ~~~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~------------~--~~~v~~~~~~~~----~~s~s~D~~i~~w~~~ 103 (343)
T 3lrv_A 42 KSMYYDKWVCMCRCEDGALHFTQLKDSKTITTI------------T--TPNPRTGGEHPA----IISRGPCNRLLLLYPG 103 (343)
T ss_dssp SSSSEEEEEEEEEEETTEEEEEEESSSSCEEEE------------E--EECCCTTCCCCS----EEEECSTTEEEEEETT
T ss_pred hhhcCCCCEEEEECCCCcEEEEECCCCcEEEEE------------e--cCCceeeeeCCc----eEEecCCCeEEEEEcc
Confidence 345567889999999999999999866542221 1 356777788885 9999999999999876
Q ss_pred Cccc-----cceEEeeeccCCCCccEEEEEECC--CCCeEEEEeCCCcEEEEeCCCCCCCCCceeee-cCCCCCeEEEEE
Q 048012 282 EFKS-----QKQVIKPKLARPGRVAVTTCAWDC--DGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVE-KGHSDDITALKF 353 (616)
Q Consensus 282 ~~~~-----~~~~~~~~~~~~~~~~v~~~~~sp--~g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~-~~h~~~V~~l~~ 353 (616)
.... ...+... ....|...|.+++|+| ++++|++|+.||+|++||++++ ..+... ..|...|++++|
T Consensus 104 ~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~----~~~~~~~~~~~~~i~~~~~ 178 (343)
T 3lrv_A 104 NQITILDSKTNKVLRE-IEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDD----SQYIVHSAKSDVEYSSGVL 178 (343)
T ss_dssp TEEEEEETTTCCEEEE-EECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSS----CEEEEECCCSSCCCCEEEE
T ss_pred CceEEeecCCcceeEE-eecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCC----cEEEEEecCCCCceEEEEE
Confidence 4210 0111111 1124445799999999 9999999999999999999976 344444 345668999999
Q ss_pred cCCCCeEEEEecCCcEEEEeCCCCCCcceEecCCCCCCcceeEEECCCCCEEEEeeccccccCCCceEEEEeCCCCceEE
Q 048012 354 SSDGRILLSRSFDGSLKVWDLRKMKEPLKVFEDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREKLELVS 433 (616)
Q Consensus 354 spdg~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~~~~~~ 433 (616)
+|++.+|++|+.||.|+|||+++.......+.. .|...|++++|+|++.+|++++ .+ .|+|||+++++.+.
T Consensus 179 ~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~~-~h~~~v~~l~fs~~g~~l~s~~-------~~-~v~iwd~~~~~~~~ 249 (343)
T 3lrv_A 179 HKDSLLLALYSPDGILDVYNLSSPDQASSRFPV-DEEAKIKEVKFADNGYWMVVEC-------DQ-TVVCFDLRKDVGTL 249 (343)
T ss_dssp CTTSCEEEEECTTSCEEEEESSCTTSCCEECCC-CTTSCEEEEEECTTSSEEEEEE-------SS-BEEEEETTSSTTCB
T ss_pred CCCCCEEEEEcCCCEEEEEECCCCCCCccEEec-cCCCCEEEEEEeCCCCEEEEEe-------CC-eEEEEEcCCCCcce
Confidence 999999999999999999999987654355544 2456799999999999999998 44 99999999987765
Q ss_pred EEec--CCCCCe--EEEEEcCCCCcEEEEeccCCCCceEEEec---------------ccCCC---CCcEEEEecCCcce
Q 048012 434 RVGI--SPACSV--VQCAWHPKLNQIFATAGDKSQGGTHILYD---------------PRLSE---RGALVCVARAPRKK 491 (616)
Q Consensus 434 ~~~~--~~~~~v--~~~~~~p~~~~l~~~~~d~~~~~~~~v~~---------------~~~s~---~g~~l~s~~~d~~~ 491 (616)
.+.. .+...+ .+++|+|++++|++++.+ ++.+.||+ +.|++ ++..|++++.++.+
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~---d~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~ 326 (343)
T 3lrv_A 250 AYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNE---SNSLTIYKFDKKTKNWTKDEESALCLQSDTADFTDMDVVCGDGGI 326 (343)
T ss_dssp SSCCCBC-----CCEEEEECTTSSEEEEEETT---TTEEEEEEECTTTCSEEEEEEEECCC----CCCCEEEEEEETTEE
T ss_pred eecccccccccccceEEEECCCCCEEEEecCC---CCcEEEEEEcccccceEecCceeEecCccccccceeEEEecCCce
Confidence 4431 011222 469999999999998763 55788884 45666 88888888888888
Q ss_pred ecccc
Q 048012 492 SVDDF 496 (616)
Q Consensus 492 ~~wd~ 496 (616)
.++-.
T Consensus 327 ~~~~~ 331 (343)
T 3lrv_A 327 AAILK 331 (343)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 77643
No 120
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.96 E-value=3.1e-28 Score=274.24 Aligned_cols=255 Identities=13% Similarity=0.239 Sum_probs=203.7
Q ss_pred cCCCCCCceEEEEecCCCCeEEEEeCCCeEEEEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCC-CCEEEEE
Q 048012 191 LEPSEGHQVRNLSWSPTSDRFLCVTGSAQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKT-KETILTS 269 (616)
Q Consensus 191 ~~~~~~~~v~~l~~sp~g~~l~~~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~-~~~l~s~ 269 (616)
+...|...|++++|+|++++|++++.||.|+||++.+... ..+..+.+|...|++++|+++. +.+|++|
T Consensus 4 ~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~----------~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~ 73 (753)
T 3jro_A 4 IANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETH----------KLIDTLTGHEGPVWRVDWAHPKFGTILASC 73 (753)
T ss_dssp ----CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEE----------EEEEEECCCSSCEEEEEECCTTSCSEEEEE
T ss_pred ecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCC----------ccceeccCCcCceEEEEecCCCCCCEEEEE
Confidence 3446888899999999999999999999999999875432 1234467899999999999872 3699999
Q ss_pred eCCCCEEEEECCCccccceEEeeeccCCCCccEEEEEECCC--CCeEEEEeCCCcEEEEeCCCCCCCCCceeeecCCCCC
Q 048012 270 SEDGSLRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWDCD--GKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHSDD 347 (616)
Q Consensus 270 s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~--g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~h~~~ 347 (616)
+.||+|++||+.++..... .....|...|++++|+|+ +++|++|+.||.|++||++.+ .......+.+|...
T Consensus 74 s~Dg~I~vwd~~~~~~~~~----~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~--~~~~~~~~~~~~~~ 147 (753)
T 3jro_A 74 SYDGKVLIWKEENGRWSQI----AVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKEN--GTTSPIIIDAHAIG 147 (753)
T ss_dssp ETTSCEEEEEEETTEEEEE----EEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSS--SCCCCEEEECCSSC
T ss_pred eCCCeEEEEECCCCccccc----ccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecC--CCcceeEeecCCCc
Confidence 9999999999987542111 112346668999999999 999999999999999999876 23445567889999
Q ss_pred eEEEEEcC-------------CCCeEEEEecCCcEEEEeCCCCCCc---ceEecCCCCCCcceeEEECCC---CCEEEEe
Q 048012 348 ITALKFSS-------------DGRILLSRSFDGSLKVWDLRKMKEP---LKVFEDLPNNYAQTNVAFSPD---EQLFLTG 408 (616)
Q Consensus 348 V~~l~~sp-------------dg~~l~s~s~Dg~v~lwd~~~~~~~---~~~~~~~~~~~~v~~v~fspd---g~~l~~g 408 (616)
|.+++|+| ++.+|++++.||+|++||+++.... ...+.. +...|++++|+|+ +.+|+++
T Consensus 148 v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~--h~~~V~~l~~sp~~~~~~~l~s~ 225 (753)
T 3jro_A 148 VNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEG--HSDWVRDVAWSPTVLLRSYLASV 225 (753)
T ss_dssp EEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECC--CSSCEEEEEECCCCSSSEEEEEE
T ss_pred eEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecC--CCCcEEEEEeccCCCCCCEEEEE
Confidence 99999999 5899999999999999999876432 233333 4567999999999 8999999
Q ss_pred eccccccCCCceEEEEeCCCCceEEE--E--ecCCCCCeEEEEEcCCCCcEEEEeccCCCCceEEEeccc
Q 048012 409 TSVERESTTGGLLCFYDREKLELVSR--V--GISPACSVVQCAWHPKLNQIFATAGDKSQGGTHILYDPR 474 (616)
Q Consensus 409 s~~~~~~~~dg~i~iwd~~~~~~~~~--~--~~~~~~~v~~~~~~p~~~~l~~~~~d~~~~~~~~v~~~~ 474 (616)
+ .||.|+|||+.+++.... + ...+...|.+++|+|++.+|++++. ++.+.+|++.
T Consensus 226 s-------~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~----Dg~I~vwd~~ 284 (753)
T 3jro_A 226 S-------QDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGG----DNKVTLWKEN 284 (753)
T ss_dssp E-------SSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECS----SSCEECCBCC
T ss_pred e-------cCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcC----CCEEEEEecC
Confidence 9 899999999988742111 1 1125678999999999999999887 7789999976
No 121
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.96 E-value=4.2e-27 Score=247.60 Aligned_cols=318 Identities=10% Similarity=0.068 Sum_probs=229.1
Q ss_pred CCcccEEEEE---ECCCCCEEEEEE--------------cCCcEEEEeCCCCccccccceecCCCCCCceEEEEecCCCC
Q 048012 147 GHTKIVSALA---VDHSGSRVLSGS--------------YDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSD 209 (616)
Q Consensus 147 ~H~~~V~~v~---~sp~g~~lasgs--------------~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~ 209 (616)
.+...+..++ |+|++..++..+ .++.++||.+............+. ....+.+++|+|++.
T Consensus 58 ~~~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~--~~~~~~~~~~s~~~~ 135 (433)
T 3bws_A 58 DKNIALVEMAIPVYKDEKEIELKLSSPGFQNSSYRIRKPEELNEKLIALDKEGITHRFISRFK--TGFQPKSVRFIDNTR 135 (433)
T ss_dssp ETTEEEEEEEEECCCTTCCEEEEEECTTBCCEEEEESSGGGGTTCEEECCBTTCSEEEEEEEE--CSSCBCCCEESSSSE
T ss_pred ccCCccEEEEEeeccCCCcEEEEEEccccCcceeeecccCCCceEEEEECCCCCcceEEEEEc--CCCCceEEEEeCCCe
Confidence 3456677778 888777665433 334345555543211112222221 233466899999666
Q ss_pred eEEEEeCCCeEEEEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEEEECCCccccceE
Q 048012 210 RFLCVTGSAQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQV 289 (616)
Q Consensus 210 ~l~~~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~~~ 289 (616)
++++++.++.|++||+.+.+..... ....+.+|...|.+++|++++ .++++++.|+.|++||+.+.+....+
T Consensus 136 ~~~~~~~~~~i~~~d~~~g~~~~~~-------~~~~~~~~~~~v~~~~~~~~~-~~~~s~~~d~~v~~~d~~~~~~~~~~ 207 (433)
T 3bws_A 136 LAIPLLEDEGMDVLDINSGQTVRLS-------PPEKYKKKLGFVETISIPEHN-ELWVSQMQANAVHVFDLKTLAYKATV 207 (433)
T ss_dssp EEEEBTTSSSEEEEETTTCCEEEEC-------CCHHHHTTCCEEEEEEEGGGT-EEEEEEGGGTEEEEEETTTCCEEEEE
T ss_pred EEEEeCCCCeEEEEECCCCeEeeec-------CcccccccCCceeEEEEcCCC-EEEEEECCCCEEEEEECCCceEEEEE
Confidence 6676777889999999876643221 122346888999999999876 59999999999999999876554433
Q ss_pred EeeeccCCCCccEEEEEECCCCCeEEE-EeCCCcEEEEeCCCCCCCCCceeeecCCCCCeEEEEEcCCCCeEEEEe----
Q 048012 290 IKPKLARPGRVAVTTCAWDCDGKCIAG-GIGDGSIQVWNLKPGWGSRPDIHVEKGHSDDITALKFSSDGRILLSRS---- 364 (616)
Q Consensus 290 ~~~~~~~~~~~~v~~~~~sp~g~~l~~-g~~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s---- 364 (616)
. .+...+.+++|+|+++++++ ++.|+.|++||++++ ..+..+..+ ..+.+++|+|++++|++++
T Consensus 208 ~------~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~----~~~~~~~~~-~~~~~~~~~~~g~~l~~~~~~~~ 276 (433)
T 3bws_A 208 D------LTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTK----LEIRKTDKI-GLPRGLLLSKDGKELYIAQFSAS 276 (433)
T ss_dssp E------CSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTT----EEEEECCCC-SEEEEEEECTTSSEEEEEEEESC
T ss_pred c------CCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCC----cEEEEecCC-CCceEEEEcCCCCEEEEEECCCC
Confidence 2 23347999999999998855 447999999999875 445555444 4599999999999999988
Q ss_pred ----cCCcEEEEeCCCCCCcceEecCCCCCCcceeEEECCCCCEEEEeeccccccCCCceEEEEeCCCCceEEEEecCCC
Q 048012 365 ----FDGSLKVWDLRKMKEPLKVFEDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREKLELVSRVGISPA 440 (616)
Q Consensus 365 ----~Dg~v~lwd~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 440 (616)
.|+.|++||+++.. .+..+. +...+.+++|+|++++|++.+. .++.|++||+.+++.+..+. +.
T Consensus 277 ~~~~~dg~i~~~d~~~~~-~~~~~~---~~~~~~~~~~~~~g~~l~~~~~------~~~~v~v~d~~~~~~~~~~~--~~ 344 (433)
T 3bws_A 277 NQESGGGRLGIYSMDKEK-LIDTIG---PPGNKRHIVSGNTENKIYVSDM------CCSKIEVYDLKEKKVQKSIP--VF 344 (433)
T ss_dssp TTCSCCEEEEEEETTTTE-EEEEEE---EEECEEEEEECSSTTEEEEEET------TTTEEEEEETTTTEEEEEEE--CS
T ss_pred ccccCCCeEEEEECCCCc-EEeecc---CCCCcceEEECCCCCEEEEEec------CCCEEEEEECCCCcEEEEec--CC
Confidence 48899999998653 233331 2235889999999986655432 79999999999999888875 45
Q ss_pred CCeEEEEEcCCCCcEEEEeccCC-----------CCceEEEec------------------ccCCCCCcEEEEecC-Ccc
Q 048012 441 CSVVQCAWHPKLNQIFATAGDKS-----------QGGTHILYD------------------PRLSERGALVCVARA-PRK 490 (616)
Q Consensus 441 ~~v~~~~~~p~~~~l~~~~~d~~-----------~~~~~~v~~------------------~~~s~~g~~l~s~~~-d~~ 490 (616)
..+.+++|+|+++.|++++.+.. .++.+.+|+ ++|+|+|.+|++++. ++.
T Consensus 345 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~d~~ 424 (433)
T 3bws_A 345 DKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEAGNQPTGLDVSPDNRYLVISDFLDHQ 424 (433)
T ss_dssp SSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEECSSSEEEEEECTTSCEEEEEETTTTE
T ss_pred CCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecCCCCCceEEEcCCCCEEEEEECCCCe
Confidence 67999999999999998886410 124677776 457899998887764 899
Q ss_pred eeccccc
Q 048012 491 KSVDDFE 497 (616)
Q Consensus 491 ~~~wd~~ 497 (616)
+++|++.
T Consensus 425 i~v~~~~ 431 (433)
T 3bws_A 425 IRVYRRD 431 (433)
T ss_dssp EEEEEET
T ss_pred EEEEEec
Confidence 9999874
No 122
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.96 E-value=1e-26 Score=238.10 Aligned_cols=259 Identities=13% Similarity=0.109 Sum_probs=193.3
Q ss_pred CCCCCceEEEEecCCCCeEEEEeCCCeEEEEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCC
Q 048012 193 PSEGHQVRNLSWSPTSDRFLCVTGSAQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSED 272 (616)
Q Consensus 193 ~~~~~~v~~l~~sp~g~~l~~~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~D 272 (616)
..|...|.+++|+|+|++|++++.+ .++||++........ .+...+..+.|.+++..++++++.|
T Consensus 16 ~~h~~~V~~v~fs~dg~~la~g~~~-~~~iw~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~d 80 (355)
T 3vu4_A 16 NHVSNPVTDYEFNQDQSCLILSTLK-SFEIYNVHPVAHIMS--------------QEMRHLSKVRMLHRTNYVAFVTGVK 80 (355)
T ss_dssp ---CCCCCEEEECTTSSEEEEECSS-EEEEEEETTEEEEEE--------------EECSCCCEEEECTTSSEEEEECSST
T ss_pred ccCCCceEEEEECCCCCEEEEEcCC-EEEEEecCCcceeee--------------eecCCeEEEEEcCCCCEEEEEECCc
Confidence 4567789999999999999888766 478999876543211 1112477788888775455778889
Q ss_pred CCEEEEECCCccccceEEeeeccCCCCccEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCCCCCceeeecCCCCCeEEEE
Q 048012 273 GSLRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWDCDGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHSDDITALK 352 (616)
Q Consensus 273 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~ 352 (616)
++|+|||+.+++....+. +...|.+++|+++. ++++ .|+.|++||+.++. ..+..+.. ....++
T Consensus 81 ~~v~iWd~~~~~~~~~~~-------~~~~v~~v~~~~~~--~~~~-~~~~i~i~d~~~~~---~~~~~~~~---~~~~~~ 144 (355)
T 3vu4_A 81 EVVHIWDDVKKQDVSRIK-------VDAPVKDLFLSREF--IVVS-YGDVISVFKFGNPW---KRITDDIR---FGGVCE 144 (355)
T ss_dssp TEEEEEETTTTEEEEEEE-------CSSCEEEEEECSSE--EEEE-ETTEEEEEESSTTC---CBSSCCEE---EEEEEE
T ss_pred cEEEEEECCCCcEEEEEE-------CCCceEEEEEcCCE--EEEE-EcCEEEEEECCCCc---eeeEEecc---CCceEE
Confidence 999999998876554432 22379999998764 4444 38899999998751 22222222 445566
Q ss_pred EcCCCCeEEE--EecCCcEEEEeCCCCC--------------Cc-ceEecCCCCCCcceeEEECCCCCEEEEeecccccc
Q 048012 353 FSSDGRILLS--RSFDGSLKVWDLRKMK--------------EP-LKVFEDLPNNYAQTNVAFSPDEQLFLTGTSVERES 415 (616)
Q Consensus 353 ~spdg~~l~s--~s~Dg~v~lwd~~~~~--------------~~-~~~~~~~~~~~~v~~v~fspdg~~l~~gs~~~~~~ 415 (616)
+++ .+|++ ++.||.|++||+++.. .+ +..+.. |...|++++|+|++++|++|+
T Consensus 145 ~s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~--h~~~v~~~~~s~~g~~l~s~s------ 214 (355)
T 3vu4_A 145 FSN--GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKA--HTNPIKMVRLNRKSDMVATCS------ 214 (355)
T ss_dssp EET--TEEEEEESSCTTCEEEEECCC------------------CCEEECC--CSSCEEEEEECTTSSEEEEEE------
T ss_pred EEc--cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEc--cCCceEEEEECCCCCEEEEEe------
Confidence 776 56666 5789999999998754 11 455555 456699999999999999999
Q ss_pred CCCce-EEEEeCCCCceEEEEecC-CCCCeEEEEEcCCCCcEEEEeccCCCCceEEEecc--------------------
Q 048012 416 TTGGL-LCFYDREKLELVSRVGIS-PACSVVQCAWHPKLNQIFATAGDKSQGGTHILYDP-------------------- 473 (616)
Q Consensus 416 ~~dg~-i~iwd~~~~~~~~~~~~~-~~~~v~~~~~~p~~~~l~~~~~d~~~~~~~~v~~~-------------------- 473 (616)
.|+. |+|||+.+++++..+... |...|.+++|+|++++|++++. ++.++||++
T Consensus 215 -~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~----d~~v~iw~~~~~~~~~~~~~~~~~~~~~~ 289 (355)
T 3vu4_A 215 -QDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSD----KWTLHVFEIFNDQDNKRHALKGWINMKYF 289 (355)
T ss_dssp -TTCSEEEEEETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEET----TCEEEEEESSCCSCCCSEETTTTEECCCC
T ss_pred -CCCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEEC----CCEEEEEEccCCCCcccccccceeecccc
Confidence 8998 999999999999999733 7789999999999999999987 778999986
Q ss_pred ----------------------cCCCCCcEEEEecCCcceeccccc
Q 048012 474 ----------------------RLSERGALVCVARAPRKKSVDDFE 497 (616)
Q Consensus 474 ----------------------~~s~~g~~l~s~~~d~~~~~wd~~ 497 (616)
+|+++|.+|+++..|+.+++|++.
T Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~ 335 (355)
T 3vu4_A 290 QSEWSLCNFKLSVDKHVRGCKIAWISESSLVVVWPHTRMIETFKVV 335 (355)
T ss_dssp CCSSCSEEEECCCCTTCCCCEEEESSSSEEEEEETTTTEEEEEEEE
T ss_pred ccccceeEEEeccCCCCCceEEEEeCCCCEEEEEeCCCeEEEEEEE
Confidence 366778888888888888888764
No 123
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.95 E-value=1.3e-25 Score=232.74 Aligned_cols=251 Identities=13% Similarity=0.124 Sum_probs=192.3
Q ss_pred EecCCcccEEEEEECCCCCEE-EEEEcCCcEEEEeCCCCccccccceecCCCCCCceEEEEecCCCCeEEEEe-CCCeEE
Q 048012 144 VLKGHTKIVSALAVDHSGSRV-LSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSDRFLCVT-GSAQAK 221 (616)
Q Consensus 144 ~l~~H~~~V~~v~~sp~g~~l-asgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~s-~d~~v~ 221 (616)
.+.+|. .+.+++|+|+|++| ++++.|+.|++||+.++.. ...+. ....+.+++|+|++++|++++ .++.|+
T Consensus 27 ~~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~----~~~~~--~~~~v~~~~~spdg~~l~~~~~~~~~v~ 99 (391)
T 1l0q_A 27 TIPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNV----IATVP--AGSSPQGVAVSPDGKQVYVTNMASSTLS 99 (391)
T ss_dssp EEECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEE----EEEEE--CSSSEEEEEECTTSSEEEEEETTTTEEE
T ss_pred EeecCC-CcceEEECCCCCEEEEECCCCCeEEEEECCCCeE----EEEEE--CCCCccceEECCCCCEEEEEECCCCEEE
Confidence 455564 58999999999976 6777999999999976532 11111 233799999999999886655 569999
Q ss_pred EEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEEEECCCccccceEEeeeccCCCCcc
Q 048012 222 IYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPGRVA 301 (616)
Q Consensus 222 vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~ 301 (616)
+||+.+.+.... +. +...+.+++|+|++..++++++.|+.|++||+.+++....+.. + ..
T Consensus 100 v~d~~~~~~~~~------------~~-~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~------~-~~ 159 (391)
T 1l0q_A 100 VIDTTSNTVAGT------------VK-TGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSV------G-RS 159 (391)
T ss_dssp EEETTTTEEEEE------------EE-CSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC------C-SS
T ss_pred EEECCCCeEEEE------------Ee-CCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEec------C-CC
Confidence 999998765322 12 2346899999999865558888999999999987655443321 1 25
Q ss_pred EEEEEECCCCCeE-EEEeCCCcEEEEeCCCCCCCCCceeeecCCCCCeEEEEEcCCCCeEEEEe---cCCcEEEEeCCCC
Q 048012 302 VTTCAWDCDGKCI-AGGIGDGSIQVWNLKPGWGSRPDIHVEKGHSDDITALKFSSDGRILLSRS---FDGSLKVWDLRKM 377 (616)
Q Consensus 302 v~~~~~sp~g~~l-~~g~~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s---~Dg~v~lwd~~~~ 377 (616)
+.+++|+|++++| ++++.++.|++||++++ .....+. |...+.+++|+|++++|++++ .++.|++||+++.
T Consensus 160 ~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~----~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~ 234 (391)
T 1l0q_A 160 PKGIAVTPDGTKVYVANFDSMSISVIDTVTN----SVIDTVK-VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTN 234 (391)
T ss_dssp EEEEEECTTSSEEEEEETTTTEEEEEETTTT----EEEEEEE-CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTT
T ss_pred cceEEECCCCCEEEEEeCCCCEEEEEECCCC----eEEEEEe-cCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCC
Confidence 7899999999987 57778999999999875 3444443 556799999999999999888 6899999999865
Q ss_pred CCcceEecCCCCCCcceeEEECCCCCEEE-EeeccccccCCCceEEEEeCCCCceEEEEec
Q 048012 378 KEPLKVFEDLPNNYAQTNVAFSPDEQLFL-TGTSVERESTTGGLLCFYDREKLELVSRVGI 437 (616)
Q Consensus 378 ~~~~~~~~~~~~~~~v~~v~fspdg~~l~-~gs~~~~~~~~dg~i~iwd~~~~~~~~~~~~ 437 (616)
. .+..+..+ ..+.+++|+|++++|+ +++ .++.|++||+.+++++..+..
T Consensus 235 ~-~~~~~~~~---~~~~~~~~s~dg~~l~~s~~-------~d~~v~v~d~~~~~~~~~~~~ 284 (391)
T 1l0q_A 235 K-ITARIPVG---PDPAGIAVTPDGKKVYVALS-------FXNTVSVIDTATNTITATMAV 284 (391)
T ss_dssp E-EEEEEECC---SSEEEEEECTTSSEEEEEET-------TTTEEEEEETTTTEEEEEEEC
T ss_pred e-EEEEEecC---CCccEEEEccCCCEEEEEcC-------CCCEEEEEECCCCcEEEEEEC
Confidence 3 34444432 3478999999999885 445 799999999999999988865
No 124
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.94 E-value=1.7e-26 Score=239.94 Aligned_cols=176 Identities=12% Similarity=0.027 Sum_probs=121.5
Q ss_pred CcccceEEEEEcCCCCCEEEEEeCCCCEEEEECCCccccceEEeeeccCCCCccEEEEEECC--------CCCeEEEEeC
Q 048012 248 GHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWDC--------DGKCIAGGIG 319 (616)
Q Consensus 248 ~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp--------~g~~l~~g~~ 319 (616)
.|...+....+.++ ..+|++++.|++|+|||+..+....... .....+|...|++++|+| ++++||+|+.
T Consensus 87 ~~~~~~~~~~~~~~-~~~las~~~d~~v~lw~~~~~~~~~~~~-~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~ 164 (393)
T 4gq1_A 87 LHDGDGNVNSSPVY-SLFLACVCQDNTVRLIITKNETIITQHV-LGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGD 164 (393)
T ss_dssp ----------CCEE-EEEEEEEETTSCEEEEEEETTEEEEEEE-ECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEET
T ss_pred ccCCCcceeecCCC-CCEEEEEeCCCcEEEEECCCCccceeee-ecccCCCCCceEEEEEccccccccCCCCCEEEEEEC
Confidence 34434444444444 4689999999999999998765433222 223457888999999997 7899999999
Q ss_pred CCcEEEEeCCCCCCCCCceeeecCCCCCeEEEEEcCCC-CeEEEEecCCcEEEEeCCCCCCcceEe--------------
Q 048012 320 DGSIQVWNLKPGWGSRPDIHVEKGHSDDITALKFSSDG-RILLSRSFDGSLKVWDLRKMKEPLKVF-------------- 384 (616)
Q Consensus 320 dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~spdg-~~l~s~s~Dg~v~lwd~~~~~~~~~~~-------------- 384 (616)
|++|+|||++++ ..+..+..|...|.+++|+|++ ++|++++.|++|+|||+++........
T Consensus 165 D~tv~~Wd~~~~----~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~ 240 (393)
T 4gq1_A 165 DCTLIIWRLTDE----GPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLN 240 (393)
T ss_dssp TSEEEEEEEETT----EEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEE
T ss_pred CCeEEEEECCCC----ceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecc
Confidence 999999999865 4566677888999999999987 589999999999999998754322111
Q ss_pred --------cCCCCCCcceeEEEC-CCCCEEEEeeccccccCCCceEEEEeCCCCceEEEEe
Q 048012 385 --------EDLPNNYAQTNVAFS-PDEQLFLTGTSVERESTTGGLLCFYDREKLELVSRVG 436 (616)
Q Consensus 385 --------~~~~~~~~v~~v~fs-pdg~~l~~gs~~~~~~~~dg~i~iwd~~~~~~~~~~~ 436 (616)
....+...+.++.|+ +++++|++++ .|+.+++||+.+++....+.
T Consensus 241 ~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s-------~d~~i~vwd~~~~~~~~~l~ 294 (393)
T 4gq1_A 241 TLPLVNTCHSSGIASSLANVRWIGSDGSGILAMC-------KSGAWLRWNLFANNDYNEIS 294 (393)
T ss_dssp SGGGC------CCSSSCSEEEEETTTTCEEEEEC-------TTSEEEEEEC----------
T ss_pred cccceeeeecccccccceeeeeecCCCCEEEEEe-------CCCCEEEEECccCCCCceEe
Confidence 011234557888886 8999999999 89999999998877665553
No 125
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.94 E-value=7.4e-25 Score=215.51 Aligned_cols=282 Identities=13% Similarity=0.082 Sum_probs=171.3
Q ss_pred cEEEEEECCCCC---EEEEEEcCCcEEEEeCCCCccccccceecCCCCCCceEEEEecCCCCeEEEEeC-CC---eEEEE
Q 048012 151 IVSALAVDHSGS---RVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSDRFLCVTG-SA---QAKIY 223 (616)
Q Consensus 151 ~V~~v~~sp~g~---~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~s~-d~---~v~vw 223 (616)
.|.++-|-..|- .+++++ ...|++|+.... ....... ...++..+|..+.|.|+...|+++.- += .|+..
T Consensus 41 ~~~~~~~~~~~~~~~~~~~~~-~~~v~lw~~~~~-~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sl 117 (356)
T 2w18_A 41 DVSAMFWERAGCKEPCIITAC-EDVVSLWKALDA-WQWEKLY-TWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRAL 117 (356)
T ss_dssp EEEEEEEC----CEEEEEEEE-SSEEEEEEESSS-SBEEEEE-EEECCSSCEEEECCCTTCCSCEEEEECSSSEEEEEEE
T ss_pred EEeeeeeccCCCCccEEEEec-cceEEEcccCCC-ccceeeE-EEeccCceeEEEEEcCcccceeeeeeccccccceEEE
Confidence 356666654443 566666 568999998874 1112222 22345667888889887665554432 21 11111
Q ss_pred ECCCC--eeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEe--CCCCEEEEECCC-ccccceEEeeeccCCC
Q 048012 224 DRDGL--TLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSS--EDGSLRIWDVNE-FKSQKQVIKPKLARPG 298 (616)
Q Consensus 224 d~~~~--~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s--~Dg~v~iwd~~~-~~~~~~~~~~~~~~~~ 298 (616)
-+... .+. ......+|...|..+ + +++++.+++ .|+.|++|++.. ++...... .|
T Consensus 118 a~spd~~~~~----------~~l~s~g~~~~v~~l---~-~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~------~~ 177 (356)
T 2w18_A 118 FCSSDDESEK----------QVLLKSGNIKAVLGL---T-KRRLVSSSGTLSDQQVEVMTFAEDGGGKENQF------LM 177 (356)
T ss_dssp CC------CC----------EEEEEEEEEEEEEEE---T-TTEEEEEESSSTTCEEEEEEECTTSCEEEEEE------EC
T ss_pred EECCCccccc----------cEEEeCCCeEEEEec---C-CCcEEEecccCCCCcEEEEEECCCCceeeeec------cC
Confidence 11111 000 000113444445443 3 334555533 599999999954 43332222 22
Q ss_pred CccEEEEEECC---CCCeEEEEeCCCcEEEEeCCCCCCCCCceeeecCCC---CCeEEEEEcCCCCeE------------
Q 048012 299 RVAVTTCAWDC---DGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHS---DDITALKFSSDGRIL------------ 360 (616)
Q Consensus 299 ~~~v~~~~~sp---~g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~h~---~~V~~l~~spdg~~l------------ 360 (616)
...++.++|++ ++.+|++|+.|++|+|||++++ ..+..+.+|. ..+.+++|+|+|.++
T Consensus 178 ~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TG----k~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~l 253 (356)
T 2w18_A 178 PPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTG----QLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESE 253 (356)
T ss_dssp CCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTC----CEEEEEECCC---CCCEEEEEEETTEEEEEEC--------
T ss_pred CCceeeEEeeccCCCCceEEEecCCCcEEEEECCCC----cEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCccee
Confidence 33577788888 7899999999999999999987 5777777654 357788999999886
Q ss_pred EEEecCCcEEEEeCCCCCCcceEec-C--CCCCCcceeEEECCCCCEEEEeeccccccCCCceEEEEeCCCCceEEEEec
Q 048012 361 LSRSFDGSLKVWDLRKMKEPLKVFE-D--LPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREKLELVSRVGI 437 (616)
Q Consensus 361 ~s~s~Dg~v~lwd~~~~~~~~~~~~-~--~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~~~~~~~~~~ 437 (616)
++|+.|++|++||..++. .+.++. . ..+...+.+..+ ++.++++++ .|++|+|||+.+++++.++..
T Consensus 254 aSGs~D~tIklWd~~tgk-~l~v~~~~~p~Gh~~~~lsg~~--sg~~lASgS-------~DgTIkIWDl~tGk~l~tL~g 323 (356)
T 2w18_A 254 SLRSPVFQLIVINPKTTL-SVGVMLYCLPPGQAGRFLEGDV--KDHCAAAIL-------TSGTIAIWDLLLGQCTALLPP 323 (356)
T ss_dssp ----CCEEEEEEETTTTE-EEEEEEECCCTTCCCCEEEEEE--ETTEEEEEE-------TTSCEEEEETTTCSEEEEECC
T ss_pred eccCCCcEEEEEECCCCE-EEEEEEeeccCCCcceeEcccc--CCCEEEEEc-------CCCcEEEEECCCCcEEEEecC
Confidence 567889999999998654 333321 0 112222333333 488899998 899999999999999999864
Q ss_pred CCCCCeEEEEEcCCCCcEEEEeccCCCCceEEEecc
Q 048012 438 SPACSVVQCAWHPKLNQIFATAGDKSQGGTHILYDP 473 (616)
Q Consensus 438 ~~~~~v~~~~~~p~~~~l~~~~~d~~~~~~~~v~~~ 473 (616)
++...+..++|+|++++|++++. +++++||++
T Consensus 324 H~~~vvs~vafSPDG~~LaSGS~----D~TIklWd~ 355 (356)
T 2w18_A 324 VSDQHWSFVKWSGTDSHLLAGQK----DGNIFVYHY 355 (356)
T ss_dssp C--CCCCEEEECSSSSEEEEECT----TSCEEEEEE
T ss_pred CCCCeEEEEEECCCCCEEEEEEC----CCcEEEecC
Confidence 33233445778887777776665 566777653
No 126
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.94 E-value=2.2e-25 Score=219.23 Aligned_cols=180 Identities=14% Similarity=0.102 Sum_probs=130.7
Q ss_pred CCeEEEEECCC-CeeeeEeeCceeEeecccCCCcccceEEEEEcC--CCCCEEEEEeCCCCEEEEECCCccccceEEeee
Q 048012 217 SAQAKIYDRDG-LTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHP--KTKETILTSSEDGSLRIWDVNEFKSQKQVIKPK 293 (616)
Q Consensus 217 d~~v~vwd~~~-~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p--~~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~ 293 (616)
++.|++|++.. ++. +..+.+|...++.++|++ ..+.+|++++.|++|+|||+.+++....+...
T Consensus 156 d~~V~~~~~s~dG~~------------~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~- 222 (356)
T 2w18_A 156 DQQVEVMTFAEDGGG------------KENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHID- 222 (356)
T ss_dssp TCEEEEEEECTTSCE------------EEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECC-
T ss_pred CCcEEEEEECCCCce------------eeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCC-
Confidence 77777777632 322 223457888888888888 22369999999999999999998876665321
Q ss_pred ccCCCCccEEEEEECCCCCeE------------EEEeCCCcEEEEeCCCCCCCCCceeee-----cCCCCCeEEEEEcCC
Q 048012 294 LARPGRVAVTTCAWDCDGKCI------------AGGIGDGSIQVWNLKPGWGSRPDIHVE-----KGHSDDITALKFSSD 356 (616)
Q Consensus 294 ~~~~~~~~v~~~~~sp~g~~l------------~~g~~dg~I~iwd~~~~~~~~~~~~~~-----~~h~~~V~~l~~spd 356 (616)
..+...+.+++|+|+|.++ ++|+.|++|++||..++ ..+..+ .+|...+.+..++
T Consensus 223 --~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tg----k~l~v~~~~~p~Gh~~~~lsg~~s-- 294 (356)
T 2w18_A 223 --DSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTT----LSVGVMLYCLPPGQAGRFLEGDVK-- 294 (356)
T ss_dssp --C---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTT----EEEEEEEECCCTTCCCCEEEEEEE--
T ss_pred --CcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCC----EEEEEEEeeccCCCcceeEccccC--
Confidence 1122367888999999876 56888999999999876 333332 4776666555554
Q ss_pred CCeEEEEecCCcEEEEeCCCCCCcceEecCCCCCCcceeEEECCCCCEEEEeeccccccCCCceEEEEeC
Q 048012 357 GRILLSRSFDGSLKVWDLRKMKEPLKVFEDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDR 426 (616)
Q Consensus 357 g~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~ 426 (616)
+.++++++.|++|+|||+.++ ..+..+..+.. ..+.+++|+|||++|++|+ .|++|+|||+
T Consensus 295 g~~lASgS~DgTIkIWDl~tG-k~l~tL~gH~~-~vvs~vafSPDG~~LaSGS-------~D~TIklWd~ 355 (356)
T 2w18_A 295 DHCAAAILTSGTIAIWDLLLG-QCTALLPPVSD-QHWSFVKWSGTDSHLLAGQ-------KDGNIFVYHY 355 (356)
T ss_dssp TTEEEEEETTSCEEEEETTTC-SEEEEECCC---CCCCEEEECSSSSEEEEEC-------TTSCEEEEEE
T ss_pred CCEEEEEcCCCcEEEEECCCC-cEEEEecCCCC-CeEEEEEECCCCCEEEEEE-------CCCcEEEecC
Confidence 889999999999999999974 45667665432 2244689999999999999 9999999995
No 127
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.93 E-value=1.2e-23 Score=226.89 Aligned_cols=316 Identities=13% Similarity=0.091 Sum_probs=221.2
Q ss_pred EECCCCCEEEEEEcCCcEEEEeCCCCccccccceecCCCCCCceEEEEecCCCCeEEEEeCCCeEEEEEC--CCCeeeeE
Q 048012 156 AVDHSGSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSDRFLCVTGSAQAKIYDR--DGLTLGEF 233 (616)
Q Consensus 156 ~~sp~g~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~s~d~~v~vwd~--~~~~~~~~ 233 (616)
+|+|++.++++++.|++|++||..++.. ...+.. ++.+..++|+|+|++|++++.++.|++||+ .+.++..
T Consensus 144 ~~~p~~~~~vs~~~d~~V~v~D~~t~~~----~~~i~~--g~~~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~- 216 (543)
T 1nir_A 144 DLDLPNLFSVTLRDAGQIALVDGDSKKI----VKVIDT--GYAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVA- 216 (543)
T ss_dssp CCCGGGEEEEEEGGGTEEEEEETTTCCE----EEEEEC--STTEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEE-
T ss_pred ccCCCCEEEEEEcCCCeEEEEECCCceE----EEEEec--CcccceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEE-
Confidence 4889999999999999999999876531 222221 233899999999999999999999999999 5544311
Q ss_pred eeCceeEeecccCCCcccceEEEEEcC----CCCCEEEEEe-CCCCEEEEECCCccccceEEeeecc-CC---C-CccEE
Q 048012 234 VKGDMYIRDLKNTKGHICGLTCGEWHP----KTKETILTSS-EDGSLRIWDVNEFKSQKQVIKPKLA-RP---G-RVAVT 303 (616)
Q Consensus 234 ~~~~~~~~~~~~~~~h~~~v~~~~~~p----~~~~~l~s~s-~Dg~v~iwd~~~~~~~~~~~~~~~~-~~---~-~~~v~ 303 (616)
.+. +...+..++|+| +++ +|++++ .+++|.|||..+.+....+...... .. | ...+.
T Consensus 217 -----------~i~-~g~~p~~va~sp~~~~dg~-~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~ 283 (543)
T 1nir_A 217 -----------EIK-IGIEARSVESSKFKGYEDR-YTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVA 283 (543)
T ss_dssp -----------EEE-CCSEEEEEEECCSTTCTTT-EEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEE
T ss_pred -----------EEe-cCCCcceEEeCCCcCCCCC-EEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceE
Confidence 122 234578999999 885 666665 6899999999887766555431110 00 1 12688
Q ss_pred EEEECCCCCe-EEEEeCCCcEEEEeCCCCCCCCCceeeecCCCCCeEEEEEcCCCCeEEEEe-cCCcEEEEeCCCCCCcc
Q 048012 304 TCAWDCDGKC-IAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHSDDITALKFSSDGRILLSRS-FDGSLKVWDLRKMKEPL 381 (616)
Q Consensus 304 ~~~~sp~g~~-l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s-~Dg~v~lwd~~~~~~~~ 381 (616)
++.+++++.. +++...+|.|.+||+.+.. ........+...+..++|+|+|++|++++ .+++|.+||+.+++ ++
T Consensus 284 ~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~---~l~~~~i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~-l~ 359 (543)
T 1nir_A 284 AIIASHEHPEFIVNVKETGKVLLVNYKDID---NLTVTSIGAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRR-LS 359 (543)
T ss_dssp EEEECSSSSEEEEEETTTTEEEEEECTTSS---SCEEEEEECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTE-EE
T ss_pred EEEECCCCCEEEEEECCCCeEEEEEecCCC---cceeEEeccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCe-EE
Confidence 9999997664 5666778999999998752 11112223566788999999999877655 58999999999753 44
Q ss_pred eEecCC--CCCCcceeEEECCC-CCEEEEeeccccccCCCceEEEEeCCC-------CceEEEEecCCCCCeEEEEEcCC
Q 048012 382 KVFEDL--PNNYAQTNVAFSPD-EQLFLTGTSVERESTTGGLLCFYDREK-------LELVSRVGISPACSVVQCAWHPK 451 (616)
Q Consensus 382 ~~~~~~--~~~~~v~~v~fspd-g~~l~~gs~~~~~~~~dg~i~iwd~~~-------~~~~~~~~~~~~~~v~~~~~~p~ 451 (616)
..+... ++......+ ++|+ +.+++++.. .++.|.|||+.+ +++++++.. +...+..++|||+
T Consensus 360 ~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~------~d~~V~v~d~~~~~~~~~~~~~v~~l~~-~g~~~~~v~~~pd 431 (543)
T 1nir_A 360 ALVDVGKTPHPGRGANF-VHPKYGPVWSTSHL------GDGSISLIGTDPKNHPQYAWKKVAELQG-QGGGSLFIKTHPK 431 (543)
T ss_dssp EEEECSSSBCCTTCEEE-EETTTEEEEEEEBS------SSSEEEEEECCTTTCTTTBTSEEEEEEC-SCSCCCCEECCTT
T ss_pred EeeccCCCCCCCCCccc-CCCCCccEEEeccC------CCceEEEEEeCCCCCchhcCeEEEEEEc-CCCCceEEEcCCC
Confidence 444421 222222222 4677 666666542 478999999998 899999986 4566788999999
Q ss_pred CCcEEEEec-------cC---------C---------------CCceEEEecccCCCCCcEEEEe-----cCCcceeccc
Q 048012 452 LNQIFATAG-------DK---------S---------------QGGTHILYDPRLSERGALVCVA-----RAPRKKSVDD 495 (616)
Q Consensus 452 ~~~l~~~~~-------d~---------~---------------~~~~~~v~~~~~s~~g~~l~s~-----~~d~~~~~wd 495 (616)
+++|+++.. +. . ..+..+++.+.|+++|+.|.++ +.++.|.|||
T Consensus 432 g~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D 511 (543)
T 1nir_A 432 SSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVD 511 (543)
T ss_dssp CCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEE
T ss_pred CCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCCCCCEEEEEeecCCCCCCeEEEEE
Confidence 999999872 11 0 1113456677788888887755 2368888888
Q ss_pred ccCCceee
Q 048012 496 FEVAPVIH 503 (616)
Q Consensus 496 ~~~~~~~~ 503 (616)
..+..++-
T Consensus 512 ~~t~~~~~ 519 (543)
T 1nir_A 512 DKTLKLKA 519 (543)
T ss_dssp TTTTEEEE
T ss_pred CCCceEEE
Confidence 87665443
No 128
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.93 E-value=3.1e-24 Score=224.32 Aligned_cols=266 Identities=18% Similarity=0.220 Sum_probs=198.6
Q ss_pred EEecCCcccEEEEEECC--------------CCCEEEEEEcC------CcEEEEeCCCCccccccceecCCCCCCceEEE
Q 048012 143 IVLKGHTKIVSALAVDH--------------SGSRVLSGSYD------YTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNL 202 (616)
Q Consensus 143 ~~l~~H~~~V~~v~~sp--------------~g~~lasgs~D------g~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l 202 (616)
..+.+|...|.++++++ .+.+|+.++.+ +.|++||+.+.. ...+ ..+...|.++
T Consensus 111 ~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g~~--~~~l----~~~~~~v~~~ 184 (415)
T 2hqs_A 111 NSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDGYN--QFVV----HRSPQPLMSP 184 (415)
T ss_dssp EEEEECGGGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETTSCS--CEEE----EEESSCEEEE
T ss_pred eEEEcChhHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCCCCC--CEEE----eCCCCcceee
Confidence 45788888888887764 26677777765 799999997532 1111 2355679999
Q ss_pred EecCCCCeEEEEeCCC---eEEEEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCC--EEE
Q 048012 203 SWSPTSDRFLCVTGSA---QAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGS--LRI 277 (616)
Q Consensus 203 ~~sp~g~~l~~~s~d~---~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~--v~i 277 (616)
+|+|+|++|++++.++ .|++||+.+.+... +..|...+.+++|+|++..++++++.++. |++
T Consensus 185 ~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~-------------l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~ 251 (415)
T 2hqs_A 185 AWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ-------------VASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYV 251 (415)
T ss_dssp EECTTSSEEEEEECTTSSCEEEEEETTTCCEEE-------------EECCSSCEEEEEECTTSSEEEEEECTTSSCEEEE
T ss_pred EEcCCCCEEEEEEecCCCcEEEEEECCCCcEEE-------------eecCCCcccCEEEcCCCCEEEEEEecCCCceEEE
Confidence 9999999999999875 99999998765422 34566789999999998645557777665 999
Q ss_pred EECCCccccceEEeeeccCCCCccEEEEEECCCCCeEEEEeC-CC--cEEEEeCCCCCCCCCceeeecCCCCCeEEEEEc
Q 048012 278 WDVNEFKSQKQVIKPKLARPGRVAVTTCAWDCDGKCIAGGIG-DG--SIQVWNLKPGWGSRPDIHVEKGHSDDITALKFS 354 (616)
Q Consensus 278 wd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~g~~-dg--~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~s 354 (616)
||+.+++. ..+ ..+...+.+++|+|+|++|++++. +| .|++||+.++ ....+..|...+.+++|+
T Consensus 252 ~d~~~~~~-~~l------~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~-----~~~~l~~~~~~~~~~~~s 319 (415)
T 2hqs_A 252 MDLASGQI-RQV------TDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGG-----APQRITWEGSQNQDADVS 319 (415)
T ss_dssp EETTTCCE-EEC------CCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSS-----CCEECCCSSSEEEEEEEC
T ss_pred EECCCCCE-EeC------cCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCC-----CEEEEecCCCcccCeEEC
Confidence 99987543 111 133447899999999999988886 45 6777898765 233455677789999999
Q ss_pred CCCCeEEEEecC---CcEEEEeCCCCCCcceEecCCCCCCcceeEEECCCCCEEEEeeccccccCCCc---eEEEEeCCC
Q 048012 355 SDGRILLSRSFD---GSLKVWDLRKMKEPLKVFEDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGG---LLCFYDREK 428 (616)
Q Consensus 355 pdg~~l~s~s~D---g~v~lwd~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg---~i~iwd~~~ 428 (616)
|+|++|++++.+ ..|++||+.++.. ..+..+ ..+.+++|+|+|++|++++ .++ .|++||+.
T Consensus 320 pdG~~l~~~~~~~g~~~i~~~d~~~~~~--~~l~~~---~~~~~~~~spdg~~l~~~s-------~~~~~~~l~~~d~~- 386 (415)
T 2hqs_A 320 SDGKFMVMVSSNGGQQHIAKQDLATGGV--QVLSST---FLDETPSLAPNGTMVIYSS-------SQGMGSVLNLVSTD- 386 (415)
T ss_dssp TTSSEEEEEEECSSCEEEEEEETTTCCE--EECCCS---SSCEEEEECTTSSEEEEEE-------EETTEEEEEEEETT-
T ss_pred CCCCEEEEEECcCCceEEEEEECCCCCE--EEecCC---CCcCCeEEcCCCCEEEEEE-------cCCCccEEEEEECC-
Confidence 999999988865 5899999986542 333322 2689999999999999988 344 89999987
Q ss_pred CceEEEEecCCCCCeEEEEEcCCCC
Q 048012 429 LELVSRVGISPACSVVQCAWHPKLN 453 (616)
Q Consensus 429 ~~~~~~~~~~~~~~v~~~~~~p~~~ 453 (616)
+.....+.. +.+.|.+++|+|...
T Consensus 387 g~~~~~l~~-~~~~v~~~~~~~~~~ 410 (415)
T 2hqs_A 387 GRFKARLPA-TDGQVKFPAWSPYLH 410 (415)
T ss_dssp SCCEEECCC-SSSEEEEEEECCCCC
T ss_pred CCcEEEeeC-CCCCCcCCccccccc
Confidence 444555543 567899999999854
No 129
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.93 E-value=5.5e-24 Score=239.82 Aligned_cols=311 Identities=15% Similarity=0.134 Sum_probs=214.5
Q ss_pred cccEEEEEECCCCCEEEEEEc-CC-----cEEEEeCCCCccccccceecCCCCC------------------------Cc
Q 048012 149 TKIVSALAVDHSGSRVLSGSY-DY-----TVRMYDFQGMNSRLQSFRQLEPSEG------------------------HQ 198 (616)
Q Consensus 149 ~~~V~~v~~sp~g~~lasgs~-Dg-----~i~iwd~~~~~~~~~~~~~~~~~~~------------------------~~ 198 (616)
...|.+++|+|+|++|++++. |+ .|++||+.++... .+...+. ..
T Consensus 36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTR-----LLVDSKVVLPGTETLSDEEKARRERQRIAAMTG 110 (741)
T ss_dssp CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEE-----EEECGGGTC--------------------CCEE
T ss_pred CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCcee-----EccchhhcccccccccchhhhhhhhhhhccccC
Confidence 457999999999999999998 88 8999999875321 1111111 23
Q ss_pred eEEEEecCCCCeEEEEeCCCeEEEEECCCC---eeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCE
Q 048012 199 VRNLSWSPTSDRFLCVTGSAQAKIYDRDGL---TLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSL 275 (616)
Q Consensus 199 v~~l~~sp~g~~l~~~s~d~~v~vwd~~~~---~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v 275 (616)
|.+++|||+|++|++++. +.|++||+.+. .+ ..+..|...+.+++|+|+++ +|++++ ++.|
T Consensus 111 v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~-------------~~l~~~~~~~~~~~~SPDG~-~la~~~-~~~i 174 (741)
T 2ecf_A 111 IVDYQWSPDAQRLLFPLG-GELYLYDLKQEGKAAV-------------RQLTHGEGFATDAKLSPKGG-FVSFIR-GRNL 174 (741)
T ss_dssp SCCCEECTTSSEEEEEET-TEEEEEESSSCSTTSC-------------CBCCCSSSCEEEEEECTTSS-EEEEEE-TTEE
T ss_pred cceeEECCCCCEEEEEeC-CcEEEEECCCCCcceE-------------EEcccCCcccccccCCCCCC-EEEEEe-CCcE
Confidence 788999999999998887 99999999876 42 23456777899999999985 777776 4689
Q ss_pred EEEECCCccccceEEeeeccC---C--------CCccEEEEEECCCCCeEEEEeCCC-----------------------
Q 048012 276 RIWDVNEFKSQKQVIKPKLAR---P--------GRVAVTTCAWDCDGKCIAGGIGDG----------------------- 321 (616)
Q Consensus 276 ~iwd~~~~~~~~~~~~~~~~~---~--------~~~~v~~~~~sp~g~~l~~g~~dg----------------------- 321 (616)
++||+.++...... ...... + ....+.+++|+|+|++|++++.|+
T Consensus 175 ~~~d~~~g~~~~~~-~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~ 253 (741)
T 2ecf_A 175 WVIDLASGRQMQLT-ADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRY 253 (741)
T ss_dssp EEEETTTTEEEECC-CCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEEC
T ss_pred EEEecCCCCEEEec-cCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeec
Confidence 99999875432211 100000 0 000146799999999999988766
Q ss_pred ----------cEEEEeCCC-CCCCCCceeeec--CCCCCeEEEEEcCCCCeEEEEec-----CCcEEEEeCCCCCCcceE
Q 048012 322 ----------SIQVWNLKP-GWGSRPDIHVEK--GHSDDITALKFSSDGRILLSRSF-----DGSLKVWDLRKMKEPLKV 383 (616)
Q Consensus 322 ----------~I~iwd~~~-~~~~~~~~~~~~--~h~~~V~~l~~spdg~~l~s~s~-----Dg~v~lwd~~~~~~~~~~ 383 (616)
.|++||+.+ + ....... .|...+.+++| |||++|++++. +..|++||+.++. ....
T Consensus 254 ~~~g~~~~~~~l~~~d~~~~~----~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~-~~~~ 327 (741)
T 2ecf_A 254 PAAGDANVQVKLGVISPAEQA----QTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQ-QRVL 327 (741)
T ss_dssp CBTTSCCCEEEEEEECSSTTC----CCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCC-EEEE
T ss_pred CCCCCCCCeeEEEEEECCCCC----ceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCc-eEEE
Confidence 789999987 6 2322222 47788999999 99999997764 5679999998754 3333
Q ss_pred ecCCCCCC--cceeEEECCCCCEEEEeeccccccCCCceEEEEeCC-CCceEEEEecCCCCCeEEE-EEcCCCCcEEEEe
Q 048012 384 FEDLPNNY--AQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDRE-KLELVSRVGISPACSVVQC-AWHPKLNQIFATA 459 (616)
Q Consensus 384 ~~~~~~~~--~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~-~~~~~~~~~~~~~~~v~~~-~~~p~~~~l~~~~ 459 (616)
+....... .+..++|+|||++++++. .+|.+.||.+. ++. +..+. .+...|..+ .|+|+++.|++++
T Consensus 328 ~~~~~~~~~~~~~~~~~spdg~~~~~~~-------~~g~~~l~~~~~~~~-~~~l~-~~~~~v~~~~~~s~dg~~l~~~~ 398 (741)
T 2ecf_A 328 AHETSPTWVPLHNSLRFLDDGSILWSSE-------RTGFQHLYRIDSKGK-AAALT-HGNWSVDELLAVDEKAGLAYFRA 398 (741)
T ss_dssp EEEECSSCCCCCSCCEECTTSCEEEEEC-------TTSSCEEEEECSSSC-EEESC-CSSSCEEEEEEEETTTTEEEEEE
T ss_pred EEcCCCCcCCcCCceEECCCCeEEEEec-------CCCccEEEEEcCCCC-eeeee-ecceEEEeEeEEeCCCCEEEEEE
Confidence 33222111 356899999999888877 67766666654 344 55554 345667777 5999999887766
Q ss_pred ccCCCCceEEEe-------------------cccCCCCCcEEEEecCC----cceeccccc
Q 048012 460 GDKSQGGTHILY-------------------DPRLSERGALVCVARAP----RKKSVDDFE 497 (616)
Q Consensus 460 ~d~~~~~~~~v~-------------------~~~~s~~g~~l~s~~~d----~~~~~wd~~ 497 (616)
.+.. ...+.|| .++|||+|++|+....+ ..+.+++..
T Consensus 399 ~~~~-~~~~~l~~~~~~g~~~~~l~~~~~~~~~~~spdg~~l~~~~~~~~~p~~~~l~~~~ 458 (741)
T 2ecf_A 399 GIES-ARESQIYAVPLQGGQPQRLSKAPGMHSASFARNASVYVDSWSNNSTPPQIELFRAN 458 (741)
T ss_dssp CSSC-TTCBEEEEEETTCCCCEECCCSCSEEEEEECTTSSEEEEEEEETTEEEEEEEEETT
T ss_pred eCCC-CceEEEEEEEcCCCCeeecccCCCceEEEECCCCCEEEEEecCCCCCCeEEEEEcC
Confidence 5310 0033333 45688999988765433 456666653
No 130
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.93 E-value=2.1e-24 Score=225.57 Aligned_cols=283 Identities=15% Similarity=0.078 Sum_probs=202.2
Q ss_pred cccEEEEEECCCCC-EEEEEE----cCC----cEEEEeC--CCCccccccceecCCCCCCceEEEEecC-----------
Q 048012 149 TKIVSALAVDHSGS-RVLSGS----YDY----TVRMYDF--QGMNSRLQSFRQLEPSEGHQVRNLSWSP----------- 206 (616)
Q Consensus 149 ~~~V~~v~~sp~g~-~lasgs----~Dg----~i~iwd~--~~~~~~~~~~~~~~~~~~~~v~~l~~sp----------- 206 (616)
...|...+|.+.|. ++++|+ .|| .|+|||+ .++.... ......+...+..+++++
T Consensus 62 ~~~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~d~~~~~~~g~ 138 (415)
T 2hqs_A 62 AQEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLA---QNSYKVNKQWLRYAGHTASDEVFEKLTGI 138 (415)
T ss_dssp GGGCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEE---EEEEEECGGGHHHHHHHHHHHHHHHHHSS
T ss_pred ccCcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEe---eeEEEcChhHHHHHHHHHHHHHHHHHcCC
Confidence 35677778888875 565776 467 8999999 6643211 111123334455555553
Q ss_pred ---CCCeEEEEeCC------CeEEEEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCC---C
Q 048012 207 ---TSDRFLCVTGS------AQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDG---S 274 (616)
Q Consensus 207 ---~g~~l~~~s~d------~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg---~ 274 (616)
.+.+++.++.+ +.|++||+++.... .+.+|...|.+++|+|++. .|++++.++ .
T Consensus 139 ~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g~~~~-------------~l~~~~~~v~~~~~Spdg~-~la~~s~~~~~~~ 204 (415)
T 2hqs_A 139 KGAFRTRIAYVVQTNGGQFPYELRVSDYDGYNQF-------------VVHRSPQPLMSPAWSPDGS-KLAYVTFESGRSA 204 (415)
T ss_dssp CCCTTCEEEEEEECSSSSCCEEEEEEETTSCSCE-------------EEEEESSCEEEEEECTTSS-EEEEEECTTSSCE
T ss_pred CCcCCCEEEEEEecCCCCccceEEEEcCCCCCCE-------------EEeCCCCcceeeEEcCCCC-EEEEEEecCCCcE
Confidence 25677776654 79999999875532 2456888999999999884 888888775 8
Q ss_pred EEEEECCCccccceEEeeeccCCCCccEEEEEECCCCCeEE-EEeCCCc--EEEEeCCCCCCCCCceeeecCCCCCeEEE
Q 048012 275 LRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWDCDGKCIA-GGIGDGS--IQVWNLKPGWGSRPDIHVEKGHSDDITAL 351 (616)
Q Consensus 275 v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~-~g~~dg~--I~iwd~~~~~~~~~~~~~~~~h~~~V~~l 351 (616)
|++||+.+++.. .+. .+...+.+++|+|+|++|+ +++.+|. |++||+.++ ....+..|...+.++
T Consensus 205 i~~~d~~tg~~~-~l~------~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~-----~~~~l~~~~~~~~~~ 272 (415)
T 2hqs_A 205 LVIQTLANGAVR-QVA------SFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASG-----QIRQVTDGRSNNTEP 272 (415)
T ss_dssp EEEEETTTCCEE-EEE------CCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTC-----CEEECCCCSSCEEEE
T ss_pred EEEEECCCCcEE-Eee------cCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCC-----CEEeCcCCCCcccce
Confidence 999999876543 221 2233789999999999887 6666665 999999875 335667788899999
Q ss_pred EEcCCCCeEEEEec-CC--cEEEEeCCCCCCcceEecCCCCCCcceeEEECCCCCEEEEeeccccccCCCceEEEEeCCC
Q 048012 352 KFSSDGRILLSRSF-DG--SLKVWDLRKMKEPLKVFEDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREK 428 (616)
Q Consensus 352 ~~spdg~~l~s~s~-Dg--~v~lwd~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~ 428 (616)
+|+|||++|++++. ++ .|++||+.+.. ...+.. +...+.+++|+|+|++|++++.. ..+..|++||+.+
T Consensus 273 ~~spdg~~l~~~s~~~g~~~i~~~d~~~~~--~~~l~~--~~~~~~~~~~spdG~~l~~~~~~----~g~~~i~~~d~~~ 344 (415)
T 2hqs_A 273 TWFPDSQNLAFTSDQAGRPQVYKVNINGGA--PQRITW--EGSQNQDADVSSDGKFMVMVSSN----GGQQHIAKQDLAT 344 (415)
T ss_dssp EECTTSSEEEEEECTTSSCEEEEEETTSSC--CEECCC--SSSEEEEEEECTTSSEEEEEEEC----SSCEEEEEEETTT
T ss_pred EECCCCCEEEEEECCCCCcEEEEEECCCCC--EEEEec--CCCcccCeEECCCCCEEEEEECc----CCceEEEEEECCC
Confidence 99999999998886 44 67777887643 223322 23458899999999999988730 0136899999999
Q ss_pred CceEEEEecCCCCCeEEEEEcCCCCcEEEEeccCCCCc--eEEEeccc
Q 048012 429 LELVSRVGISPACSVVQCAWHPKLNQIFATAGDKSQGG--THILYDPR 474 (616)
Q Consensus 429 ~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~~~~--~~~v~~~~ 474 (616)
+++. .+.. + ..+..++|+|+++.|++++.+ ++ .+.+|++.
T Consensus 345 ~~~~-~l~~-~-~~~~~~~~spdg~~l~~~s~~---~~~~~l~~~d~~ 386 (415)
T 2hqs_A 345 GGVQ-VLSS-T-FLDETPSLAPNGTMVIYSSSQ---GMGSVLNLVSTD 386 (415)
T ss_dssp CCEE-ECCC-S-SSCEEEEECTTSSEEEEEEEE---TTEEEEEEEETT
T ss_pred CCEE-EecC-C-CCcCCeEEcCCCCEEEEEEcC---CCccEEEEEECC
Confidence 8874 3332 2 379999999999999998875 44 56666654
No 131
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.93 E-value=8.1e-23 Score=220.43 Aligned_cols=313 Identities=13% Similarity=0.136 Sum_probs=221.7
Q ss_pred EEEEEECCCCCEEEEEEcCCcEEEEeC--CCCccccccceecCCCCCCceEEEEecC----CCCeEEEEeC-CCeEEEEE
Q 048012 152 VSALAVDHSGSRVLSGSYDYTVRMYDF--QGMNSRLQSFRQLEPSEGHQVRNLSWSP----TSDRFLCVTG-SAQAKIYD 224 (616)
Q Consensus 152 V~~v~~sp~g~~lasgs~Dg~i~iwd~--~~~~~~~~~~~~~~~~~~~~v~~l~~sp----~g~~l~~~s~-d~~v~vwd 224 (616)
+.+++|+|+|++|++++.|++|++||+ .+.. ....+. .+..+..++|+| +|++|++++. +++|.|||
T Consensus 181 ~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~----~~~~i~--~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D 254 (543)
T 1nir_A 181 VHISRMSASGRYLLVIGRDARIDMIDLWAKEPT----KVAEIK--IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMD 254 (543)
T ss_dssp EEEEEECTTSCEEEEEETTSEEEEEETTSSSCE----EEEEEE--CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEE
T ss_pred cceEEECCCCCEEEEECCCCeEEEEECcCCCCc----EEEEEe--cCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEe
Confidence 899999999999999999999999999 4432 222222 355689999999 9999998884 89999999
Q ss_pred CCCCeeeeEeeCceeEeecccCCCcc-cceEEEEEcCCCCCEEEEEeCCCCEEEEECCCccccceEEeeeccCCCCccEE
Q 048012 225 RDGLTLGEFVKGDMYIRDLKNTKGHI-CGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPGRVAVT 303 (616)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~ 303 (616)
..+.++......... .......|. ..+..+.++|++..++++...+++|.+||+.+.+......... ...+.
T Consensus 255 ~~t~~~~~~i~~~g~--~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~~-----~~~~~ 327 (543)
T 1nir_A 255 GETLEPKQIVSTRGM--TVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGA-----APFLH 327 (543)
T ss_dssp TTTCCEEEEEECCEE--CSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEEC-----CSSCC
T ss_pred ccccccceeecccCc--ccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEecc-----CcCcc
Confidence 887765433221100 000001133 3788999999888888899999999999998765443111111 12467
Q ss_pred EEEECCCCCeEEEEe-CCCcEEEEeCCCCCCCCCceeeecC----CCCCeEEEEEcCC-CCeEEEEe-cCCcEEEEeCCC
Q 048012 304 TCAWDCDGKCIAGGI-GDGSIQVWNLKPGWGSRPDIHVEKG----HSDDITALKFSSD-GRILLSRS-FDGSLKVWDLRK 376 (616)
Q Consensus 304 ~~~~sp~g~~l~~g~-~dg~I~iwd~~~~~~~~~~~~~~~~----h~~~V~~l~~spd-g~~l~s~s-~Dg~v~lwd~~~ 376 (616)
.++|+|+|++|++++ .+++|.+||+.++ .++..+.. |.+....+ ++|+ +.+++++. .|++|.|||+.+
T Consensus 328 ~~~~spdg~~l~va~~~~~~v~v~D~~tg----~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~ 402 (543)
T 1nir_A 328 DGGWDSSHRYFMTAANNSNKVAVIDSKDR----RLSALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDP 402 (543)
T ss_dssp CEEECTTSCEEEEEEGGGTEEEEEETTTT----EEEEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCT
T ss_pred CceECCCCCEEEEEecCCCeEEEEECCCC----eEEEeeccCCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCC
Confidence 889999999876655 5899999999986 45554443 65544444 4676 66777765 589999999986
Q ss_pred C------CCcceEecCCCCCCcceeEEECCCCCEEEEeeccccccCCCceEEEEeCCCCceE-EEEec-------CCCCC
Q 048012 377 M------KEPLKVFEDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREKLELV-SRVGI-------SPACS 442 (616)
Q Consensus 377 ~------~~~~~~~~~~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~~~~~-~~~~~-------~~~~~ 442 (616)
. ...++.+..+. ..+..++|+|++++|++++........++.|.|||+.+++.+ ..+.+ .+...
T Consensus 403 ~~~~~~~~~~v~~l~~~g--~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~ 480 (543)
T 1nir_A 403 KNHPQYAWKKVAELQGQG--GGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKR 480 (543)
T ss_dssp TTCTTTBTSEEEEEECSC--SCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCE
T ss_pred CCCchhcCeEEEEEEcCC--CCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCCCCc
Confidence 2 24456665533 347889999999999998621000001579999999999988 55432 33567
Q ss_pred eEEEEEcCCCCcEEEEeccC-CCCceEEEecccCCCCCcEEEEecC
Q 048012 443 VVQCAWHPKLNQIFATAGDK-SQGGTHILYDPRLSERGALVCVARA 487 (616)
Q Consensus 443 v~~~~~~p~~~~l~~~~~d~-~~~~~~~v~~~~~s~~g~~l~s~~~ 487 (616)
+..+.|+|++..|+++...+ ..++.+.|||.. .++++.+...
T Consensus 481 ~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~~---t~~~~~~i~~ 523 (543)
T 1nir_A 481 VVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDK---TLKLKAVVKD 523 (543)
T ss_dssp EEEEEECSSSSEEEEEEECCTTSCCEEEEEETT---TTEEEEEECC
T ss_pred eEeccCCCCCCEEEEEeecCCCCCCeEEEEECC---CceEEEeecC
Confidence 99999999999999886521 236899999987 3666665543
No 132
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.91 E-value=6.9e-23 Score=207.70 Aligned_cols=281 Identities=10% Similarity=0.094 Sum_probs=188.2
Q ss_pred EEEEEEcCCcEEEEeCCCCccccccceecCCCCCCceEEEEecCCCCeEEEEeCC-CeEEEEECC--CCeeeeEeeCcee
Q 048012 163 RVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSDRFLCVTGS-AQAKIYDRD--GLTLGEFVKGDMY 239 (616)
Q Consensus 163 ~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~s~d-~~v~vwd~~--~~~~~~~~~~~~~ 239 (616)
++++++.|+.|++|++.... ........ .+...+.+++|+|++++|++++.+ +.|.+|+++ +..+...
T Consensus 7 l~~~~~~~~~v~~~~~~~~~-~~~~~~~~--~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~------ 77 (343)
T 1ri6_A 7 VYIASPESQQIHVWNLNHEG-ALTLTQVV--DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFA------ 77 (343)
T ss_dssp EEEEEGGGTEEEEEEECTTS-CEEEEEEE--ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEE------
T ss_pred EEEeCCCCCeEEEEEECCCC-cEEEeeeE--ecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeec------
Confidence 44455789999999986321 11122211 245568899999999999988886 999999987 4443211
Q ss_pred EeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEEEECCCccccceEEeeeccCCCCccEEEEEECCCCCeEEEEe-
Q 048012 240 IRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWDCDGKCIAGGI- 318 (616)
Q Consensus 240 ~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~g~- 318 (616)
..+..+. .+..++|+|++..+++++..++.|++||+..+.... ...... ....+.+++|+|+|++|++++
T Consensus 78 ----~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~-~~~~~~---~~~~~~~~~~s~dg~~l~~~~~ 148 (343)
T 1ri6_A 78 ----AESALPG-SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVG-VVDVVE---GLDGCHSANISPDNRTLWVPAL 148 (343)
T ss_dssp ----EEEECSS-CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEE-EEEEEC---CCTTBCCCEECTTSSEEEEEEG
T ss_pred ----cccccCC-CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCcccc-cccccc---CCCCceEEEECCCCCEEEEecC
Confidence 1112222 678999999986444555568899999995322111 111111 112578899999999888887
Q ss_pred CCCcEEEEeCCC-CCCCCCcee--eec-CCCCCeEEEEEcCCCCeEEEEe-cCCcEEEEeCCCCCCc---ceEecCCC--
Q 048012 319 GDGSIQVWNLKP-GWGSRPDIH--VEK-GHSDDITALKFSSDGRILLSRS-FDGSLKVWDLRKMKEP---LKVFEDLP-- 388 (616)
Q Consensus 319 ~dg~I~iwd~~~-~~~~~~~~~--~~~-~h~~~V~~l~~spdg~~l~s~s-~Dg~v~lwd~~~~~~~---~~~~~~~~-- 388 (616)
.++.|++||+.. +. ..... ... .....+.+++|+|++++|++++ .++.|.+||+...... ...+....
T Consensus 149 ~~~~v~~~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~ 226 (343)
T 1ri6_A 149 KQDRICLFTVSDDGH--LVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPEN 226 (343)
T ss_dssp GGTEEEEEEECTTSC--EEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTT
T ss_pred CCCEEEEEEecCCCc--eeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCcc
Confidence 899999999986 31 11111 222 2345788999999999776555 7899999999642211 22222111
Q ss_pred --CCCcceeEEECCCCCEEEEeeccccccCCCceEEEEeCC--C--CceEEEEecCCCCCeEEEEEcCCCCcEEEEeccC
Q 048012 389 --NNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDRE--K--LELVSRVGISPACSVVQCAWHPKLNQIFATAGDK 462 (616)
Q Consensus 389 --~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~--~--~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~ 462 (616)
....+..++|+|++++|+++.. .++.|.+||+. + .+.+..+.. ...+..++|+|+++.|++++.+
T Consensus 227 ~~~~~~~~~i~~s~dg~~l~v~~~------~~~~i~v~d~~~~~~~~~~~~~~~~--~~~~~~~~~s~dg~~l~~~~~~- 297 (343)
T 1ri6_A 227 FSDTRWAADIHITPDGRHLYACDR------TASLITVFSVSEDGSVLSKEGFQPT--ETQPRGFNVDHSGKYLIAAGQK- 297 (343)
T ss_dssp CCSCCCEEEEEECTTSSEEEEEET------TTTEEEEEEECTTSCCEEEEEEEEC--SSSCCCEEECTTSSEEEEECTT-
T ss_pred ccccCCccceEECCCCCEEEEEec------CCCEEEEEEEcCCCCceEEeeeecC--CCccceEEECCCCCEEEEecCC-
Confidence 1234668999999998886552 68999999998 3 344444443 3348899999999999988864
Q ss_pred CCCceEEEeccc
Q 048012 463 SQGGTHILYDPR 474 (616)
Q Consensus 463 ~~~~~~~v~~~~ 474 (616)
++.+.+|++.
T Consensus 298 --~~~v~v~~~d 307 (343)
T 1ri6_A 298 --SHHISVYEIV 307 (343)
T ss_dssp --TCEEEEEEEE
T ss_pred --CCeEEEEEEc
Confidence 6788999765
No 133
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.91 E-value=3.5e-22 Score=202.49 Aligned_cols=286 Identities=10% Similarity=0.083 Sum_probs=184.8
Q ss_pred cCCcccEEEEEECCCCCEEEEEEcC-CcEEEEeCCCCccccccceecCCCCCCceEEEEecCCCCeEEEEeC-CCeEEEE
Q 048012 146 KGHTKIVSALAVDHSGSRVLSGSYD-YTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSDRFLCVTG-SAQAKIY 223 (616)
Q Consensus 146 ~~H~~~V~~v~~sp~g~~lasgs~D-g~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~s~-d~~v~vw 223 (616)
..|...+.+++|+|+|++|++++.+ +.|++|++............+.. . ..+..++|+|++++|++++. ++.|.+|
T Consensus 34 ~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~s~dg~~l~~~~~~~~~i~~~ 111 (343)
T 1ri6_A 34 VDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESAL-P-GSLTHISTDHQGQFVFVGSYNAGNVSVT 111 (343)
T ss_dssp EECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEC-S-SCCSEEEECTTSSEEEEEETTTTEEEEE
T ss_pred EecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeecccccc-C-CCCcEEEEcCCCCEEEEEecCCCeEEEE
Confidence 4577789999999999999999887 99999999722112222222221 2 26889999999998877765 7899999
Q ss_pred ECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEe-CCCCEEEEECCCccccceEE--eeeccCCCCc
Q 048012 224 DRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSS-EDGSLRIWDVNEFKSQKQVI--KPKLARPGRV 300 (616)
Q Consensus 224 d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s-~Dg~v~iwd~~~~~~~~~~~--~~~~~~~~~~ 300 (616)
++........ ...+.. ...+.+++|+|++. +|++++ .++.|++||+.+........ .... ....
T Consensus 112 d~~~~~~~~~---------~~~~~~-~~~~~~~~~s~dg~-~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~--~~~~ 178 (343)
T 1ri6_A 112 RLEDGLPVGV---------VDVVEG-LDGCHSANISPDNR-TLWVPALKQDRICLFTVSDDGHLVAQDPAEVTT--VEGA 178 (343)
T ss_dssp EEETTEEEEE---------EEEECC-CTTBCCCEECTTSS-EEEEEEGGGTEEEEEEECTTSCEEEEEEEEEEC--STTC
T ss_pred ECCCCccccc---------cccccC-CCCceEEEECCCCC-EEEEecCCCCEEEEEEecCCCceeeeccccccc--CCCC
Confidence 9842221111 111122 23488899999885 555555 89999999998622222211 1111 1123
Q ss_pred cEEEEEECCCCCeEEEEe-CCCcEEEEeCCCCCCCCCceeeec----CC--CCCeEEEEEcCCCCeEEEE-ecCCcEEEE
Q 048012 301 AVTTCAWDCDGKCIAGGI-GDGSIQVWNLKPGWGSRPDIHVEK----GH--SDDITALKFSSDGRILLSR-SFDGSLKVW 372 (616)
Q Consensus 301 ~v~~~~~sp~g~~l~~g~-~dg~I~iwd~~~~~~~~~~~~~~~----~h--~~~V~~l~~spdg~~l~s~-s~Dg~v~lw 372 (616)
.+.+++|+|+|++|++++ .++.|++|++.............. ++ ...+.+++|+|+|++|+++ ..++.|++|
T Consensus 179 ~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~ 258 (343)
T 1ri6_A 179 GPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVF 258 (343)
T ss_dssp CEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEE
T ss_pred CcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEE
Confidence 678899999999776554 789999999964211111122221 11 2357789999999887754 478999999
Q ss_pred eCCCCCCcceEecCCCCCCcceeEEECCCCCEEEEeeccccccCCCceEEEE--eCCCCce--EEEEecCCCCCeEEEEE
Q 048012 373 DLRKMKEPLKVFEDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFY--DREKLEL--VSRVGISPACSVVQCAW 448 (616)
Q Consensus 373 d~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iw--d~~~~~~--~~~~~~~~~~~v~~~~~ 448 (616)
|+.........+........+..++|+|++++|++++. .++.|.+| |..+++. +..+. ......+++|
T Consensus 259 d~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~------~~~~v~v~~~d~~~g~~~~~~~~~--~g~~p~~i~~ 330 (343)
T 1ri6_A 259 SVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQ------KSHHISVYEIVGEQGLLHEKGRYA--VGQGPMWVVV 330 (343)
T ss_dssp EECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEECT------TTCEEEEEEEETTTTEEEEEEEEE--CSSSCCEEEE
T ss_pred EEcCCCCceEEeeeecCCCccceEEECCCCCEEEEecC------CCCeEEEEEEcCCCceeeEccccc--cCCCCeeEEE
Confidence 99832221222222222233889999999999888873 57999999 5556643 33443 2345677788
Q ss_pred cCCCCc
Q 048012 449 HPKLNQ 454 (616)
Q Consensus 449 ~p~~~~ 454 (616)
+++.+.
T Consensus 331 ~~~~~~ 336 (343)
T 1ri6_A 331 NAHEGG 336 (343)
T ss_dssp EEEC--
T ss_pred EcccCC
Confidence 776443
No 134
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.91 E-value=1.9e-22 Score=235.47 Aligned_cols=333 Identities=10% Similarity=0.033 Sum_probs=236.8
Q ss_pred eEEecCCcccEEEEEECCCCCEEEEEEcC------CcEEEEeCCCCccccccceecCCCCCCce-------EEEEecCCC
Q 048012 142 EIVLKGHTKIVSALAVDHSGSRVLSGSYD------YTVRMYDFQGMNSRLQSFRQLEPSEGHQV-------RNLSWSPTS 208 (616)
Q Consensus 142 ~~~l~~H~~~V~~v~~sp~g~~lasgs~D------g~i~iwd~~~~~~~~~~~~~~~~~~~~~v-------~~l~~sp~g 208 (616)
...|.+|...|.+++|||||++||+++.+ ..|++|++.++. ... ...+...+ ..++|+|+|
T Consensus 45 ~~~lt~~~~~v~~~~~SPDG~~la~~s~~~~~~~~~~i~~~d~~~g~-----~~~-lt~~~~~~~~~~~~~~~~~~SpDg 118 (1045)
T 1k32_A 45 TRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGE-----IKR-ITYFSGKSTGRRMFTDVAGFDPDG 118 (1045)
T ss_dssp EEEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTE-----EEE-CCCCCEEEETTEECSEEEEECTTC
T ss_pred EEEeeeCCCcccCeEECCCCCEEEEEEeeccCCCCCeEEEEECCCCC-----eEE-cccCCCcccccccccccccCCCCC
Confidence 45678899999999999999999988654 379999987652 122 22345556 899999999
Q ss_pred CeEEEEeCC------CeEEEEECCCCeeeeEeeCc---------------------------------eeE----eeccc
Q 048012 209 DRFLCVTGS------AQAKIYDRDGLTLGEFVKGD---------------------------------MYI----RDLKN 245 (616)
Q Consensus 209 ~~l~~~s~d------~~v~vwd~~~~~~~~~~~~~---------------------------------~~~----~~~~~ 245 (616)
+.+++++.+ ..|.+|++.+.....+..+. .+. .....
T Consensus 119 ~ll~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~spG~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~ 198 (1045)
T 1k32_A 119 NLIISTDAMQPFSSMTCLYRVENDGINFVPLNLGPATHILFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKK 198 (1045)
T ss_dssp CEEEEECTTSSSTTCCEEEEEEGGGTEEEECCSCSCSEEEEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEE
T ss_pred EEEEEECCcCCCcccceEEEEECCCCCeEEecCCCcceeeeCCCEEEEeccCCCccccccccCCCcCCEEEECCCCCeEE
Confidence 966666543 46888887766543221110 000 01122
Q ss_pred CCCcccceEEEEEcCCCCCEEEEEeCCCCEEEEECCC-ccccceEE--------eeecc---------------------
Q 048012 246 TKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNE-FKSQKQVI--------KPKLA--------------------- 295 (616)
Q Consensus 246 ~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~-~~~~~~~~--------~~~~~--------------------- 295 (616)
+.+|...+.++.|+++ .++++++.|++++||.+.. +.....+. .....
T Consensus 199 l~~~~~~v~~~~~s~d--~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~~~~~SpDG~~la~~~~~~i~~~d~~~~~ 276 (1045)
T 1k32_A 199 IVDMSTHVSSPVIVGH--RIYFITDIDGFGQIYSTDLDGKDLRKHTSFTDYYPRHLNTDGRRILFSKGGSIYIFNPDTEK 276 (1045)
T ss_dssp EECCSSCCEEEEEETT--EEEEEECTTSSCEEEEEETTSCSCEECCCCCSSCEEEEEESSSCEEEEETTEEEEECTTTCC
T ss_pred CcCCCCcccceEEeCC--EEEEEEeccCceEEEEEeCCCCcceEecCCCCcceeeEcCCCCEEEEEeCCEEEEecCCceE
Confidence 3578888999999986 5778888889999997642 11111100 00000
Q ss_pred ----CC-----------CCccEEEEEEC-CCCCeEEEEeCCCcEEEEeCCCCCCCCCceeeecCCCC-CeEEEEEcCCCC
Q 048012 296 ----RP-----------GRVAVTTCAWD-CDGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHSD-DITALKFSSDGR 358 (616)
Q Consensus 296 ----~~-----------~~~~v~~~~~s-p~g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~h~~-~V~~l~~spdg~ 358 (616)
.. +...+.+++|+ |+|++|++++ ++.|++|++..+ ....+..|.. .+.+++|+ ||+
T Consensus 277 l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~-----~~~~~~~~~~~~~~~~~~s-dg~ 349 (1045)
T 1k32_A 277 IEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGT-----YVLKVPEPLRIRYVRRGGD-TKV 349 (1045)
T ss_dssp EEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSS-----BEEECSCCSCEEEEEECSS-SEE
T ss_pred eeeeccCcccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCCC-----ceEEccCCCcceEEeeeEc-CCC
Confidence 00 11146788999 9999888887 788999998764 2334566777 89999999 999
Q ss_pred eEEEEecCCcEE-EEeCCCCCCcceEecCCCCCCcceeEEECCCCCEEEEeeccccccCCCceEEEEeCCCCceEEEEec
Q 048012 359 ILLSRSFDGSLK-VWDLRKMKEPLKVFEDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREKLELVSRVGI 437 (616)
Q Consensus 359 ~l~s~s~Dg~v~-lwd~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~~~~~~~~~~ 437 (616)
.|++++.++.|. +||+.... ...+. .+...+..++|+|||++|++++ .++.|++||+.+++....+.
T Consensus 350 ~l~~~s~~~~l~~~~d~~~~~--~~~l~--~~~~~~~~~~~SpDG~~la~~~-------~~~~v~~~d~~tg~~~~~~~- 417 (1045)
T 1k32_A 350 AFIHGTREGDFLGIYDYRTGK--AEKFE--ENLGNVFAMGVDRNGKFAVVAN-------DRFEIMTVDLETGKPTVIER- 417 (1045)
T ss_dssp EEEEEETTEEEEEEEETTTCC--EEECC--CCCCSEEEEEECTTSSEEEEEE-------TTSEEEEEETTTCCEEEEEE-
T ss_pred eEEEEECCCceEEEEECCCCC--ceEec--CCccceeeeEECCCCCEEEEEC-------CCCeEEEEECCCCceEEecc-
Confidence 999999888888 89987543 22332 3345689999999999999998 78999999999998877664
Q ss_pred CCCCCeEEEEEcCCCCcEEEEeccC------CCCceEEEec------------------ccCCCCCcEEEEecCCcceec
Q 048012 438 SPACSVVQCAWHPKLNQIFATAGDK------SQGGTHILYD------------------PRLSERGALVCVARAPRKKSV 493 (616)
Q Consensus 438 ~~~~~v~~~~~~p~~~~l~~~~~d~------~~~~~~~v~~------------------~~~s~~g~~l~s~~~d~~~~~ 493 (616)
.+...+..++|+|++++|++++.+. .....+.+|+ +.|+|+|++|+..+.+....+
T Consensus 418 ~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~~~~l~~~~~~~~~~~~spdG~~l~~~s~~~~~~~ 497 (1045)
T 1k32_A 418 SREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDADSKNLYYLSYRSLDPS 497 (1045)
T ss_dssp CSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEECSCSSSBEEEEEECTTSCEEEEEESCCCCCE
T ss_pred CCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCcEEEeeCCCcccCCceEcCCCCEEEEEecccCCcC
Confidence 3567789999999999998887631 1124666665 458999999999998888888
Q ss_pred ccccCCce
Q 048012 494 DDFEVAPV 501 (616)
Q Consensus 494 wd~~~~~~ 501 (616)
|+.....+
T Consensus 498 ~~~~~~~~ 505 (1045)
T 1k32_A 498 PDRVVLNF 505 (1045)
T ss_dssp ECSSSSCE
T ss_pred cchhcccc
Confidence 87654433
No 135
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.91 E-value=5.6e-22 Score=200.43 Aligned_cols=281 Identities=8% Similarity=0.039 Sum_probs=187.8
Q ss_pred EECCCCC-EEEEEEcCCcEEEEeCCCCccccccceecCCCCCCceEEEEecCCCCeEEEEeC-CCeEEEEECCCCee-ee
Q 048012 156 AVDHSGS-RVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSDRFLCVTG-SAQAKIYDRDGLTL-GE 232 (616)
Q Consensus 156 ~~sp~g~-~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~s~-d~~v~vwd~~~~~~-~~ 232 (616)
.|.+++. .+++++.++.|++||+.++.. ...+ ..+...+ .++|+|++++|++++. ++.|.+||+.+..+ ..
T Consensus 4 ~~~~~~~~~~v~~~~~~~v~~~d~~~~~~----~~~~-~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~ 77 (331)
T 3u4y_A 4 MFQTTSNFGIVVEQHLRRISFFSTDTLEI----LNQI-TLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVV 77 (331)
T ss_dssp ---CCCCEEEEEEGGGTEEEEEETTTCCE----EEEE-ECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEE
T ss_pred eEcCCCCEEEEEecCCCeEEEEeCcccce----eeeE-EccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEE
Confidence 4555555 477788899999999987532 1111 1234456 9999999998777766 88999999987664 21
Q ss_pred EeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCC---CEEEEECCCccccceEEeeeccCCCCccEEEEEECC
Q 048012 233 FVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDG---SLRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWDC 309 (616)
Q Consensus 233 ~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg---~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp 309 (616)
. +..+...+.+++|+|++. +|+++..++ .|++||+.+++....+.. ...+.+++|+|
T Consensus 78 ~------------~~~~~~~~~~~~~s~dg~-~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~-------~~~~~~~~~sp 137 (331)
T 3u4y_A 78 A------------IQEGQSSMADVDITPDDQ-FAVTVTGLNHPFNMQSYSFLKNKFISTIPI-------PYDAVGIAISP 137 (331)
T ss_dssp E------------EEECSSCCCCEEECTTSS-EEEECCCSSSSCEEEEEETTTTEEEEEEEC-------CTTEEEEEECT
T ss_pred e------------cccCCCCccceEECCCCC-EEEEecCCCCcccEEEEECCCCCeEEEEEC-------CCCccceEECC
Confidence 1 223334444589999885 666555543 899999987665443221 11468999999
Q ss_pred CCCeEEEE-eCCCc-EEEEeCCCCCCCCCceeeecCCCCCeEEEEEcCCCCeEEEEe-cCCcEEEEeCCCCCCc--ceEe
Q 048012 310 DGKCIAGG-IGDGS-IQVWNLKPGWGSRPDIHVEKGHSDDITALKFSSDGRILLSRS-FDGSLKVWDLRKMKEP--LKVF 384 (616)
Q Consensus 310 ~g~~l~~g-~~dg~-I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s-~Dg~v~lwd~~~~~~~--~~~~ 384 (616)
+|++|+++ ..++. |.+|++...............+...+..++|+|+|++|+.++ .++.|++||+.++... +..+
T Consensus 138 dg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~ 217 (331)
T 3u4y_A 138 NGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAV 217 (331)
T ss_dssp TSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEE
T ss_pred CCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeec
Confidence 99865554 55688 999998753100000011223445689999999999665554 6899999999865431 3333
Q ss_pred cCCCCCCcceeEEECCCCCEEEEeeccccccCCCceEEEEeCCCCce--EEEEecC---CC---CCeEEEEEcCCCCcEE
Q 048012 385 EDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREKLEL--VSRVGIS---PA---CSVVQCAWHPKLNQIF 456 (616)
Q Consensus 385 ~~~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~~~~--~~~~~~~---~~---~~v~~~~~~p~~~~l~ 456 (616)
. ....+..++|+|+|++|+++.. .++.|.+||+.+++. +..+... .. ..+..++|+|++++|+
T Consensus 218 ~---~~~~~~~~~~spdg~~l~v~~~------~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~ 288 (331)
T 3u4y_A 218 G---TNNLPGTIVVSRDGSTVYVLTE------STVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLF 288 (331)
T ss_dssp E---CSSCCCCEEECTTSSEEEEECS------SEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEE
T ss_pred c---CCCCCceEEECCCCCEEEEEEc------CCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEE
Confidence 2 3355789999999998877652 578899999999887 4443321 01 1124578888888888
Q ss_pred EEeccCCCCceEEEeccc
Q 048012 457 ATAGDKSQGGTHILYDPR 474 (616)
Q Consensus 457 ~~~~d~~~~~~~~v~~~~ 474 (616)
+++.+ ++.+.||++.
T Consensus 289 v~~~~---~~~v~v~d~~ 303 (331)
T 3u4y_A 289 ISANI---SRELKVFTIS 303 (331)
T ss_dssp EEETT---TTEEEEEETT
T ss_pred EecCC---CCcEEEEEec
Confidence 77765 6788888875
No 136
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.90 E-value=1.7e-22 Score=199.77 Aligned_cols=265 Identities=14% Similarity=0.156 Sum_probs=184.5
Q ss_pred EEEcCCcEEEEeCCCCccccccceecCCCCCCceEEEEecCCCCeEEEEeCCCeEEEEECCC-CeeeeEeeCceeEeecc
Q 048012 166 SGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSDRFLCVTGSAQAKIYDRDG-LTLGEFVKGDMYIRDLK 244 (616)
Q Consensus 166 sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~s~d~~v~vwd~~~-~~~~~~~~~~~~~~~~~ 244 (616)
+++.|+.|++||+.+.... .+ ..+...|.+++|+|++++|++++ ++.|++||+.+ ......
T Consensus 17 ~~~~~~~i~~~d~~~~~~~--~~----~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~----------- 78 (297)
T 2ojh_A 17 GGSMRSSIEIFNIRTRKMR--VV----WQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKV----------- 78 (297)
T ss_dssp -CCCCEEEEEEETTTTEEE--EE----EEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEEC-----------
T ss_pred CCCcceeEEEEeCCCCcee--ee----ccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEe-----------
Confidence 3467899999999875321 11 12466799999999999998876 78999999987 653221
Q ss_pred cCCCc-ccceEEEEEcCCCCCEEEEEe--CCCCEEEEECCCccccceEEeeeccCCCCccEEEEEECCCCCeEE-EEeCC
Q 048012 245 NTKGH-ICGLTCGEWHPKTKETILTSS--EDGSLRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWDCDGKCIA-GGIGD 320 (616)
Q Consensus 245 ~~~~h-~~~v~~~~~~p~~~~~l~s~s--~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~-~g~~d 320 (616)
...| ...+.+++|+|++. +|++++ .++.++||.+.......... .....+.+++|+|++++|+ ++..+
T Consensus 79 -~~~~~~~~~~~~~~spdg~-~l~~~~~~~~~~~~l~~~~~~~~~~~~~------~~~~~~~~~~~spdg~~l~~~~~~~ 150 (297)
T 2ojh_A 79 -DTGFATICNNDHGISPDGA-LYAISDKVEFGKSAIYLLPSTGGTPRLM------TKNLPSYWHGWSPDGKSFTYCGIRD 150 (297)
T ss_dssp -CCTTCCCBCSCCEECTTSS-EEEEEECTTTSSCEEEEEETTCCCCEEC------CSSSSEEEEEECTTSSEEEEEEEET
T ss_pred -ccccccccccceEECCCCC-EEEEEEeCCCCcceEEEEECCCCceEEe------ecCCCccceEECCCCCEEEEEECCC
Confidence 2333 46788999999884 777777 34566666553211111111 1111488899999999877 77889
Q ss_pred CcEEEEeCCCCCCCCCceeeecCCCCCeEEEEEcCCCCeEEEEe-cCCcEEEEeCCCCCCcceEecCCCCCCcceeEEEC
Q 048012 321 GSIQVWNLKPGWGSRPDIHVEKGHSDDITALKFSSDGRILLSRS-FDGSLKVWDLRKMKEPLKVFEDLPNNYAQTNVAFS 399 (616)
Q Consensus 321 g~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s-~Dg~v~lwd~~~~~~~~~~~~~~~~~~~v~~v~fs 399 (616)
+.++||++... ......+..|...+.+++|+|++++|+.++ .++.++||++.........+.. +...+.+++|+
T Consensus 151 ~~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~--~~~~~~~~~~s 225 (297)
T 2ojh_A 151 QVFDIYSMDID---SGVETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITD--SAYGDWFPHPS 225 (297)
T ss_dssp TEEEEEEEETT---TCCEEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCC--CSEEEEEEEEC
T ss_pred CceEEEEEECC---CCcceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEec--CCcccCCeEEC
Confidence 99999986432 124456667888899999999999888776 5899999998743444444443 33558899999
Q ss_pred CCCCEEEEeecccccc----CCCceEEEEeCCCCceEEEEec-CCCCCeEEEEEcCCCCcEEEEecc
Q 048012 400 PDEQLFLTGTSVERES----TTGGLLCFYDREKLELVSRVGI-SPACSVVQCAWHPKLNQIFATAGD 461 (616)
Q Consensus 400 pdg~~l~~gs~~~~~~----~~dg~i~iwd~~~~~~~~~~~~-~~~~~v~~~~~~p~~~~l~~~~~d 461 (616)
|++++|++++...... ..++.|++||+.+++....... .+...+..++|+|+++.|++++.+
T Consensus 226 ~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~ 292 (297)
T 2ojh_A 226 PSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRYF 292 (297)
T ss_dssp TTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEEC
T ss_pred CCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccCCCCcccccceECCCCCEEEEEEec
Confidence 9999999887310000 0126799999998876443322 245678888999999888888764
No 137
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.90 E-value=9.6e-23 Score=228.99 Aligned_cols=280 Identities=15% Similarity=0.073 Sum_probs=189.2
Q ss_pred cEEEEEECCCCCEEEEEEcCCcEEEEeCCCCccccccceecCCCCCC---ceEEEEecCCCCeEEEEeCC---------C
Q 048012 151 IVSALAVDHSGSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGH---QVRNLSWSPTSDRFLCVTGS---------A 218 (616)
Q Consensus 151 ~V~~v~~sp~g~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~---~v~~l~~sp~g~~l~~~s~d---------~ 218 (616)
.+.+++|+|+|+++++ +.||+|++||+.++... .....+.. .|.+++|||+|++|++++.+ +
T Consensus 18 ~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~-----~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~ 91 (723)
T 1xfd_A 18 HDPEAKWISDTEFIYR-EQKGTVRLWNVETNTST-----VLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTG 91 (723)
T ss_dssp CCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCE-----EEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCS
T ss_pred cccccEEcCCCcEEEE-eCCCCEEEEECCCCcEE-----EEeccccccccccceEEECCCCCEEEEEecCccceeeccee
Confidence 3678899999998877 78999999999875321 11222222 48999999999999998764 7
Q ss_pred eEEEEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEEEECCCccccceEEeeeccC--
Q 048012 219 QAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLAR-- 296 (616)
Q Consensus 219 ~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~-- 296 (616)
.+++||+.+.... .+....+|...+..++|+|+++ .|++++. +.|++||+.++.............
T Consensus 92 ~i~~~d~~~~~~~----------~l~~~~~~~~~~~~~~~SPdG~-~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~ 159 (723)
T 1xfd_A 92 YYVLSKIPHGDPQ----------SLDPPEVSNAKLQYAGWGPKGQ-QLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIY 159 (723)
T ss_dssp EEEEEESSSCCCE----------ECCCTTCCSCCCSBCCBCSSTT-CEEEEET-TEEEEESSSSSCCEEEECCCBTTTEE
T ss_pred eEEEEECCCCceE----------eccCCccccccccccEECCCCC-EEEEEEC-CeEEEEECCCCceEEEecCCCCCceE
Confidence 8889999877642 2333455666688999999985 6777665 789999998765432221100000
Q ss_pred -CC---------CccEEEEEECCCCCeEEEEeCCC----------------------------------cEEEEeCCCCC
Q 048012 297 -PG---------RVAVTTCAWDCDGKCIAGGIGDG----------------------------------SIQVWNLKPGW 332 (616)
Q Consensus 297 -~~---------~~~v~~~~~sp~g~~l~~g~~dg----------------------------------~I~iwd~~~~~ 332 (616)
+. ...+.+++|+|+|++|++++.|+ .|++||+.++
T Consensus 160 ~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~- 238 (723)
T 1xfd_A 160 NGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGP- 238 (723)
T ss_dssp EEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSS-
T ss_pred CcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCC-
Confidence 00 01237899999999999987553 7999999876
Q ss_pred CCCCceeeecC------CCCCeEEEEEcCCCCeEEEEecC----CcEEEEeCCCCCCcceEecCCCCCCcc----eeEEE
Q 048012 333 GSRPDIHVEKG------HSDDITALKFSSDGRILLSRSFD----GSLKVWDLRKMKEPLKVFEDLPNNYAQ----TNVAF 398 (616)
Q Consensus 333 ~~~~~~~~~~~------h~~~V~~l~~spdg~~l~s~s~D----g~v~lwd~~~~~~~~~~~~~~~~~~~v----~~v~f 398 (616)
.....+.. |...+.+++|+|||++|++.+.. ..|++||+.++. ....+... +...+ ..++|
T Consensus 239 ---~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~-~~~~~~~~-~~~~~~~~~~~~~~ 313 (723)
T 1xfd_A 239 ---THDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGV-CTKKHEDE-SEAWLHRQNEEPVF 313 (723)
T ss_dssp ---CCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCC-EEEEEEEE-CSSCCCCCCCCCEE
T ss_pred ---ceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCc-ceEEEEec-cCCEEeccCCCceE
Confidence 22233333 35679999999999998777543 579999998654 33333221 11222 37899
Q ss_pred CCCCCEEEEe-eccccccCCCc------eEEEEe-CCCCce--EEEEecCCCCCeEE-EEEcCCCCcEEEEecc
Q 048012 399 SPDEQLFLTG-TSVERESTTGG------LLCFYD-REKLEL--VSRVGISPACSVVQ-CAWHPKLNQIFATAGD 461 (616)
Q Consensus 399 spdg~~l~~g-s~~~~~~~~dg------~i~iwd-~~~~~~--~~~~~~~~~~~v~~-~~~~p~~~~l~~~~~d 461 (616)
+|||++|+.. +. .++ .|++|| ..+++. ...+.. ....+.. ++|+|+++.|++++.+
T Consensus 314 spdg~~l~~~~~~------~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~-~~~~~~~~~~~spdg~~l~~~~~~ 380 (723)
T 1xfd_A 314 SKDGRKFFFIRAI------PQGGRGKFYHITVSSSQPNSSNDNIQSITS-GDWDVTKILAYDEKGNKIYFLSTE 380 (723)
T ss_dssp CTTSCSEEEEEEE------CCSSSSCEEEEEEECSSCCSSSCCCCBSCC-SSSCEEEEEEEETTTTEEEEEESS
T ss_pred cCCCCeEEEEEec------ccCCCcceeEEEEEeccCCCCccceeEeec-CCeEEEeeeEEcCCCCEEEEEEcC
Confidence 9999988765 32 445 688888 444441 334432 2334554 6999999999877654
No 138
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.89 E-value=3.4e-21 Score=196.26 Aligned_cols=282 Identities=11% Similarity=0.053 Sum_probs=199.9
Q ss_pred CcccEEEEEECCCCCEEEEEEc-------CCcEEEEeCCCCccccccceecCCCCCCceEEEEecCCCCeEEEEe-CCCe
Q 048012 148 HTKIVSALAVDHSGSRVLSGSY-------DYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSDRFLCVT-GSAQ 219 (616)
Q Consensus 148 H~~~V~~v~~sp~g~~lasgs~-------Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~s-~d~~ 219 (616)
....+..++|+|+|++|++++. ++.|.+||..+... ...+. .+..+..++|+++|++++++. .++.
T Consensus 39 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~-~~~~~-----~~~~~~~~~~s~dg~~l~v~~~~~~~ 112 (353)
T 3vgz_A 39 VGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEV-TQAIH-----NDLKPFGATINNTTQTLWFGNTVNSA 112 (353)
T ss_dssp EESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCE-EEEEE-----ESSCCCSEEEETTTTEEEEEETTTTE
T ss_pred hccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeE-EEEEe-----cCCCcceEEECCCCCEEEEEecCCCE
Confidence 3456889999999999888874 56899999886531 11111 123477899999999766554 4799
Q ss_pred EEEEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEE-eCCCCEEEEECCCccccceEEeeeccCCC
Q 048012 220 AKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTS-SEDGSLRIWDVNEFKSQKQVIKPKLARPG 298 (616)
Q Consensus 220 v~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~-s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~ 298 (616)
|.+||..+.++......... ..........+.++.|+|++..+++++ +.++.|.+||+.+++....+.. .
T Consensus 113 v~~~d~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~------~ 183 (353)
T 3vgz_A 113 VTAIDAKTGEVKGRLVLDDR---KRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQN------T 183 (353)
T ss_dssp EEEEETTTCCEEEEEESCCC---CCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECC------C
T ss_pred EEEEeCCCCeeEEEEecCCC---ccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecC------C
Confidence 99999987765332111000 000001112368899999986444444 3578899999987655433320 1
Q ss_pred CccEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCCCCCceeeec----CCCCCeEEEEEcCCCCeEEEEec-CCcEEEEe
Q 048012 299 RVAVTTCAWDCDGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEK----GHSDDITALKFSSDGRILLSRSF-DGSLKVWD 373 (616)
Q Consensus 299 ~~~v~~~~~sp~g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~----~h~~~V~~l~~spdg~~l~s~s~-Dg~v~lwd 373 (616)
...+.+++|+|+|++|++++.++.|.+||+.++ .....+. ++...+.+++|+|++++|++++. ++.|.+||
T Consensus 184 ~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~----~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d 259 (353)
T 3vgz_A 184 GKMSTGLALDSEGKRLYTTNADGELITIDTADN----KILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVD 259 (353)
T ss_dssp CTTCCCCEEETTTTEEEEECTTSEEEEEETTTT----EEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEE
T ss_pred CCccceEEECCCCCEEEEEcCCCeEEEEECCCC----eEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEE
Confidence 114678899999999999999999999999876 3443333 25556889999999997777665 48999999
Q ss_pred CCCCCCcceEecCCCCCCcceeEEECCCCCEEEEeeccccccCCCceEEEEeCCCCceEEEEecCCCCCeEEEEEcCCCC
Q 048012 374 LRKMKEPLKVFEDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREKLELVSRVGISPACSVVQCAWHPKLN 453 (616)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~ 453 (616)
+.++. .+..+... . ...++|+|++++|+++.. .++.|.+||+.+++.+..+.. ...+..++|+|+++
T Consensus 260 ~~~~~-~~~~~~~~-~---~~~~~~s~dg~~l~v~~~------~~~~v~~~d~~~~~~~~~~~~--~~~~~~~~~s~dg~ 326 (353)
T 3vgz_A 260 TRNGN-ILAKVAAP-E---SLAVLFNPARNEAYVTHR------QAGKVSVIDAKSYKVVKTFDT--PTHPNSLALSADGK 326 (353)
T ss_dssp TTTCC-EEEEEECS-S---CCCEEEETTTTEEEEEET------TTTEEEEEETTTTEEEEEEEC--CSEEEEEEECTTSC
T ss_pred CCCCc-EEEEEEcC-C---CceEEECCCCCEEEEEEC------CCCeEEEEECCCCeEEEEEec--CCCCCeEEEcCCCC
Confidence 98754 34444321 1 357999999997776653 689999999999999888864 34689999999999
Q ss_pred cEEEEecc
Q 048012 454 QIFATAGD 461 (616)
Q Consensus 454 ~l~~~~~d 461 (616)
+|+++..+
T Consensus 327 ~l~v~~~~ 334 (353)
T 3vgz_A 327 TLYVSVKQ 334 (353)
T ss_dssp EEEEEEEC
T ss_pred EEEEEEcc
Confidence 88888764
No 139
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.89 E-value=9.5e-22 Score=220.32 Aligned_cols=318 Identities=13% Similarity=0.114 Sum_probs=208.1
Q ss_pred EEEEEECCCCCEEEEEEcCCcEEEEeCCCCccccccceecC-------------CCCCCceEEEEecCCCCeEEEEeCCC
Q 048012 152 VSALAVDHSGSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLE-------------PSEGHQVRNLSWSPTSDRFLCVTGSA 218 (616)
Q Consensus 152 V~~v~~sp~g~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~-------------~~~~~~v~~l~~sp~g~~l~~~s~d~ 218 (616)
+..+.|. |..+++++.|+ | +||+.++......+.... ......|.+++|||+ .+++++ .++
T Consensus 28 ~~~~~w~--g~~~~~~~~~~-i-~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~~~~~~-~~~ 101 (706)
T 2z3z_A 28 VVGLQWM--GDNYVFIEGDD-L-VFNKANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR-GLVVLF-TQG 101 (706)
T ss_dssp CTTCEEE--TTEEEEEETTE-E-EEEC-------CEEEEHHHHHTTC-----------CCCEEEEETTT-TEEEEE-ETT
T ss_pred CCCCcCc--CCeEEEEeCCc-E-EEECCCCcEeeEEeechhHhhhhccchhccccccccCceeEEECCC-CeEEEE-ECC
Confidence 4456777 67788888888 8 999987643101111100 011245999999999 666655 459
Q ss_pred eEEEEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEEEECCC-----ccccceEEeee
Q 048012 219 QAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNE-----FKSQKQVIKPK 293 (616)
Q Consensus 219 ~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~-----~~~~~~~~~~~ 293 (616)
.|++||+.+..+..+ ..+...+.+++|+|++. .|+++ .++.|++||+.+ ++.........
T Consensus 102 ~i~~~d~~~~~~~~l-------------~~~~~~~~~~~~SpdG~-~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~ 166 (706)
T 2z3z_A 102 GLVGFDMLARKVTYL-------------FDTNEETASLDFSPVGD-RVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGT 166 (706)
T ss_dssp EEEEEETTTTEEEEE-------------ECCTTCCTTCEECTTSS-EEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCB
T ss_pred EEEEEECCCCceEEc-------------cCCcccccCCcCCCCCC-EEEEE-ECCeEEEEecCcccccCCCcEEeccCCC
Confidence 999999988765332 23455678899999985 67664 679999999986 54322111000
Q ss_pred cc--------CCCCccEEEEEECCCCCeEEEEe---------------------------------CCCcEEEEeCCCCC
Q 048012 294 LA--------RPGRVAVTTCAWDCDGKCIAGGI---------------------------------GDGSIQVWNLKPGW 332 (616)
Q Consensus 294 ~~--------~~~~~~v~~~~~sp~g~~l~~g~---------------------------------~dg~I~iwd~~~~~ 332 (616)
.. ..+...+.+++|+|+|++|++++ .+..|++||+.++.
T Consensus 167 ~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~ 246 (706)
T 2z3z_A 167 ETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGK 246 (706)
T ss_dssp TTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTE
T ss_pred CCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCc
Confidence 00 00001247899999999999987 44689999998761
Q ss_pred CCCCceeeecCCCCCeEEEEEcCCCCeEEEEecCC-----cEEEEeCCCCCCcceEecCCCCC--CcceeEEECC--CCC
Q 048012 333 GSRPDIHVEKGHSDDITALKFSSDGRILLSRSFDG-----SLKVWDLRKMKEPLKVFEDLPNN--YAQTNVAFSP--DEQ 403 (616)
Q Consensus 333 ~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg-----~v~lwd~~~~~~~~~~~~~~~~~--~~v~~v~fsp--dg~ 403 (616)
...+.....|...+.+++|+|||++|++++.++ .|++||+.++............. ..+..++|+| ||+
T Consensus 247 --~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~ 324 (706)
T 2z3z_A 247 --TVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQ 324 (706)
T ss_dssp --EEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSE
T ss_pred --eEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCE
Confidence 111111235677899999999999999988776 89999998753322222211111 1246789999 999
Q ss_pred EEEEeeccccccCCCceEEEEeCC-CCceEEEEecCCCCCeEE-EEEcCCCCcEEEEeccCC-CCceEEE----------
Q 048012 404 LFLTGTSVERESTTGGLLCFYDRE-KLELVSRVGISPACSVVQ-CAWHPKLNQIFATAGDKS-QGGTHIL---------- 470 (616)
Q Consensus 404 ~l~~gs~~~~~~~~dg~i~iwd~~-~~~~~~~~~~~~~~~v~~-~~~~p~~~~l~~~~~d~~-~~~~~~v---------- 470 (616)
+|+++. .++.++||.+. ++..+..+.. +...+.. ++|+|+++.|++++.+.. ....+..
T Consensus 325 ~l~~~~-------~~g~~~l~~~~~~~~~~~~l~~-~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~ 396 (706)
T 2z3z_A 325 FIWQSR-------RDGWNHLYLYDTTGRLIRQVTK-GEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGKTKD 396 (706)
T ss_dssp EEEEEC-------TTSSCEEEEEETTSCEEEECCC-SSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCCCEE
T ss_pred EEEEEc-------cCCccEEEEEECCCCEEEecCC-CCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCCcee
Confidence 998887 78888888876 6666666643 4455766 799999999888776420 0013333
Q ss_pred -------ecccCCCCCcEEEEecCC----cceecccccCCc
Q 048012 471 -------YDPRLSERGALVCVARAP----RKKSVDDFEVAP 500 (616)
Q Consensus 471 -------~~~~~s~~g~~l~s~~~d----~~~~~wd~~~~~ 500 (616)
+.++|||+|++|+....+ ..+.+||+....
T Consensus 397 l~~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~~~~ 437 (706)
T 2z3z_A 397 LTPESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIGKGS 437 (706)
T ss_dssp SCCSSSEEEEEECTTSSEEEEEEECSSCSCEEEEEESSSCE
T ss_pred ccCCCceEEEEECCCCCEEEEEecCCCCCcEEEEEECCCCe
Confidence 346789999988876443 568999986654
No 140
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.89 E-value=2.8e-21 Score=202.76 Aligned_cols=260 Identities=16% Similarity=0.159 Sum_probs=172.5
Q ss_pred CcccEEEEEECCCCCEEEEEEcCCcEEEEeCCCCccc------cccce----ecCCCCCCceEEEEecCCCCeEE----E
Q 048012 148 HTKIVSALAVDHSGSRVLSGSYDYTVRMYDFQGMNSR------LQSFR----QLEPSEGHQVRNLSWSPTSDRFL----C 213 (616)
Q Consensus 148 H~~~V~~v~~sp~g~~lasgs~Dg~i~iwd~~~~~~~------~~~~~----~~~~~~~~~v~~l~~sp~g~~l~----~ 213 (616)
+...++++++++++.+|++++.|+ |+||+....... ..... .....+...|.+++|+|++++|+ +
T Consensus 35 ~~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~s 113 (434)
T 2oit_A 35 PKERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMS 113 (434)
T ss_dssp CCSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEE
T ss_pred CCCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEec
Confidence 345689999999999999999988 999875321000 00000 01112345699999999999999 6
Q ss_pred EeCCCeEEEEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEEEECCCccccceEEeee
Q 048012 214 VTGSAQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKPK 293 (616)
Q Consensus 214 ~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~ 293 (616)
++.|+.|+|||+........ .....+..+..+.+|...|.+++|+|+...+|++++.||+|++||+++.......
T Consensus 114 gs~d~~v~iwd~~~~~~~~~-~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~---- 188 (434)
T 2oit_A 114 SEYGSIIAFFDVRTFSNEAK-QQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCAT---- 188 (434)
T ss_dssp TTTEEEEEEEEHHHHHCTTC-SSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEE----
T ss_pred cCCCceEEEEEccccccCCc-CCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeec----
Confidence 77899999999764310000 0000011234567899999999999986689999999999999999876332111
Q ss_pred ccCCCCccEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCCCCCceeeecC-------CCCCeEEEEEcCCCCeEEEEe-c
Q 048012 294 LARPGRVAVTTCAWDCDGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKG-------HSDDITALKFSSDGRILLSRS-F 365 (616)
Q Consensus 294 ~~~~~~~~v~~~~~sp~g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~-------h~~~V~~l~~spdg~~l~s~s-~ 365 (616)
..|...|++++|+|+|++|++|+.||+|++||++ + .....+.. |...|.+++|++++.++++.+ .
T Consensus 189 --~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~----~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~ 261 (434)
T 2oit_A 189 --LPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-L----QEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAA 261 (434)
T ss_dssp --ECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-C----CEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEET
T ss_pred --cCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-C----cccccccCCcccCCCCceeEEEEEEecCceEEEEEccC
Confidence 1345589999999999999999999999999998 3 12222222 334799999999888776543 4
Q ss_pred CC------cEEEEeCCCCCC--cc--eEecCC-----CCCCcceeEEECCCCCEEEEeeccccccCCCceEEEEeC
Q 048012 366 DG------SLKVWDLRKMKE--PL--KVFEDL-----PNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDR 426 (616)
Q Consensus 366 Dg------~v~lwd~~~~~~--~~--~~~~~~-----~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~ 426 (616)
|| .+++|++++.+. .. ..+... ....+...+.+-++.++++++++ ..+.|.|+..
T Consensus 262 dg~~~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~dw~l~~v~s~------~s~dv~vl~~ 331 (434)
T 2oit_A 262 DGTLETSPDVVMALLPKKEEKHPEIFVNFMEPCYGSCTERQHHYYLSYIEEWDLVLAASA------ASTEVSILAR 331 (434)
T ss_dssp TCCSSSCCEEEEEECCCTTTCCCCEEEECCCSSCCCCSSSCCCEEEEEEGGGTEEEEEET------TCSBCEEEEE
T ss_pred CCccCCCCceEEEEeccCCCCCCcceEecccCCCCCCCCcCcceeeehhccCCEEEEecC------CCCceeEEEe
Confidence 43 389999986431 11 111111 11112223344478888888774 4455555553
No 141
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.89 E-value=3.2e-21 Score=225.15 Aligned_cols=289 Identities=12% Similarity=0.088 Sum_probs=206.4
Q ss_pred EEecCCcccEEEEEECCCCCEEEEEEcCCcEEEEeCCCCccccccceecCCCCCCceEEEEecCCCCeEEEEeCCCeEEE
Q 048012 143 IVLKGHTKIVSALAVDHSGSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSDRFLCVTGSAQAKI 222 (616)
Q Consensus 143 ~~l~~H~~~V~~v~~sp~g~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~s~d~~v~v 222 (616)
..+.+|...|.++.|+++ .++++++.|+.++||.+....... ..+.. + ..+..++|+|+|++|+++ .++.|++
T Consensus 197 ~~l~~~~~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g~~~---~~l~~-~-~~~~~~~~SpDG~~la~~-~~~~i~~ 269 (1045)
T 1k32_A 197 KKIVDMSTHVSSPVIVGH-RIYFITDIDGFGQIYSTDLDGKDL---RKHTS-F-TDYYPRHLNTDGRRILFS-KGGSIYI 269 (1045)
T ss_dssp EEEECCSSCCEEEEEETT-EEEEEECTTSSCEEEEEETTSCSC---EECCC-C-CSSCEEEEEESSSCEEEE-ETTEEEE
T ss_pred EECcCCCCcccceEEeCC-EEEEEEeccCceEEEEEeCCCCcc---eEecC-C-CCcceeeEcCCCCEEEEE-eCCEEEE
Confidence 455899999999999988 677788889999999875322111 12211 2 236677999999998887 5899999
Q ss_pred EECCCCeeeeEeeCceeEeecccCCCcccceEEEEEc-CCCCCEEEEEeCCCCEEEEECCCccccceEEeeeccCCCCc-
Q 048012 223 YDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWH-PKTKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPGRV- 300 (616)
Q Consensus 223 wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~-p~~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~- 300 (616)
|++....+..+.. ... ........|...+.+++|+ |++. .|++++ ++.|++|++..+.... + ..+..
T Consensus 270 ~d~~~~~l~~l~~-~~~-~~~~~~~~~~~~v~~~~~S~pdG~-~la~~~-~~~i~~~~~~~~~~~~-~------~~~~~~ 338 (1045)
T 1k32_A 270 FNPDTEKIEKIEI-GDL-ESPEDRIISIPSKFAEDFSPLDGD-LIAFVS-RGQAFIQDVSGTYVLK-V------PEPLRI 338 (1045)
T ss_dssp ECTTTCCEEECCC-CCC-CBCCSEEEECGGGGEEEEEECGGG-CEEEEE-TTEEEEECTTSSBEEE-C------SCCSCE
T ss_pred ecCCceEeeeecc-Ccc-cccccccccccccceeeecCCCCC-EEEEEE-cCEEEEEcCCCCceEE-c------cCCCcc
Confidence 9986554432111 000 0000112355678999999 9985 566665 7899999987654221 1 12333
Q ss_pred cEEEEEECCCCCeEEEEeCCCcEE-EEeCCCCCCCCCceeeecCCCCCeEEEEEcCCCCeEEEEecCCcEEEEeCCCCCC
Q 048012 301 AVTTCAWDCDGKCIAGGIGDGSIQ-VWNLKPGWGSRPDIHVEKGHSDDITALKFSSDGRILLSRSFDGSLKVWDLRKMKE 379 (616)
Q Consensus 301 ~v~~~~~sp~g~~l~~g~~dg~I~-iwd~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~v~lwd~~~~~~ 379 (616)
.+..++|+ +|+.|+.++.++.|. +||+..+ ....+..|...+.+++|+|||++|++++.++.|++||+.++.
T Consensus 339 ~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~-----~~~~l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~- 411 (1045)
T 1k32_A 339 RYVRRGGD-TKVAFIHGTREGDFLGIYDYRTG-----KAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGK- 411 (1045)
T ss_dssp EEEEECSS-SEEEEEEEETTEEEEEEEETTTC-----CEEECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCC-
T ss_pred eEEeeeEc-CCCeEEEEECCCceEEEEECCCC-----CceEecCCccceeeeEECCCCCEEEEECCCCeEEEEECCCCc-
Confidence 68999999 999999999888898 9998865 233344788889999999999999999999999999998654
Q ss_pred cceEecCCCCCCcceeEEECCCCCEEEEeeccc---cccCCCceEEEEeCCCCceEEEEecCCCCCeEEEEEcCCCCcEE
Q 048012 380 PLKVFEDLPNNYAQTNVAFSPDEQLFLTGTSVE---RESTTGGLLCFYDREKLELVSRVGISPACSVVQCAWHPKLNQIF 456 (616)
Q Consensus 380 ~~~~~~~~~~~~~v~~v~fspdg~~l~~gs~~~---~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~ 456 (616)
....... +...+.+++|||||++|++++... .....++.|++||+.+++ +..+. .+...+..++|+|+++.|+
T Consensus 412 ~~~~~~~--~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~~l~-~~~~~~~~~~~spdG~~l~ 487 (1045)
T 1k32_A 412 PTVIERS--REAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAAT-TENSHDYAPAFDADSKNLY 487 (1045)
T ss_dssp EEEEEEC--SSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-EEECS-CSSSBEEEEEECTTSCEEE
T ss_pred eEEeccC--CCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCc-EEEee-CCCcccCCceEcCCCCEEE
Confidence 3444433 344588999999999999887210 000123589999999887 44443 3556688999999999998
Q ss_pred EEec
Q 048012 457 ATAG 460 (616)
Q Consensus 457 ~~~~ 460 (616)
+++.
T Consensus 488 ~~s~ 491 (1045)
T 1k32_A 488 YLSY 491 (1045)
T ss_dssp EEES
T ss_pred EEec
Confidence 8776
No 142
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.88 E-value=1.8e-21 Score=212.93 Aligned_cols=261 Identities=14% Similarity=0.103 Sum_probs=188.4
Q ss_pred CcccEEEEEECCCCCEEEEEEc-CCcEEEEeCCCCccccccceecCCCCCCceEEEEecCCCCeEEEEeC---CCeEEEE
Q 048012 148 HTKIVSALAVDHSGSRVLSGSY-DYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSDRFLCVTG---SAQAKIY 223 (616)
Q Consensus 148 H~~~V~~v~~sp~g~~lasgs~-Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~s~---d~~v~vw 223 (616)
+..+|++++|+|||++||+++. ||+++||++.++. ...+...+...+..+.|+|+ +.++++.. +...+||
T Consensus 20 ~~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~-----~~~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~ 93 (582)
T 3o4h_A 20 IAVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGE-----TVKLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALF 93 (582)
T ss_dssp HHSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTE-----EEECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEE
T ss_pred hccchheeecCCCCCeEEEEEccCCceeEEEEcCCC-----cEeeecccccccccccCCCC-eEEEEeccCCCCcceEEE
Confidence 3567999999999999999887 9999999985532 23333334457999999999 66666654 4555665
Q ss_pred EC----CCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEEEECCCccccceEEeeeccCCCC
Q 048012 224 DR----DGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPGR 299 (616)
Q Consensus 224 d~----~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~ 299 (616)
.+ .+... .+....+ +...+|+|++..++++.+.++.+.|||+.+++... +... .
T Consensus 94 ~~~~~~~g~~~-----------~l~~~~~----~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~-l~~~----~-- 151 (582)
T 3o4h_A 94 KVNTSRPGEEQ-----------RLEAVKP----MRILSGVDTGEAVVFTGATEDRVALYALDGGGLRE-LARL----P-- 151 (582)
T ss_dssp EEETTSTTCCE-----------ECTTSCS----BEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEE-EEEE----S--
T ss_pred EEeccCCCccc-----------cccCCCC----ceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEE-eecC----C--
Confidence 44 33221 1222222 33568888886666666666667799998764322 2211 0
Q ss_pred ccEEEEEECCCCCeEEEEeCC----CcEEEEeCCCCCCCCCceeeecCCCCCeEEEEEcCCCCeEEEEecCC--cEEEEe
Q 048012 300 VAVTTCAWDCDGKCIAGGIGD----GSIQVWNLKPGWGSRPDIHVEKGHSDDITALKFSSDGRILLSRSFDG--SLKVWD 373 (616)
Q Consensus 300 ~~v~~~~~sp~g~~l~~g~~d----g~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg--~v~lwd 373 (616)
. .+++|+|+|++|++++.+ +.|++||+.++ ....+..|...+.+++|||||++|+++..++ .|++||
T Consensus 152 -~-~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g-----~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d 224 (582)
T 3o4h_A 152 -G-FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSG-----GLRVFDSGEGSFSSASISPGMKVTAGLETAREARLVTVD 224 (582)
T ss_dssp -S-CEEEEEEETTEEEEEEEEETTEEEEEEEETTTC-----CCEEECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEEC
T ss_pred -C-ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCC-----CceEeecCCCccccceECCCCCEEEEccCCCeeEEEEEc
Confidence 1 688999999999988877 78999999876 2346678888899999999999999888888 899999
Q ss_pred CCCCCCcceEecCCCCCCcceeEE--------ECCCCCEEEEeeccccccCCCceEEEEeCCCCceEEEEecCCCCCeEE
Q 048012 374 LRKMKEPLKVFEDLPNNYAQTNVA--------FSPDEQLFLTGTSVERESTTGGLLCFYDREKLELVSRVGISPACSVVQ 445 (616)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~v~~v~--------fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~ 445 (616)
+.++.. . .+.. +...+..++ |+|||.++++++ .++.++||++ ++.+. ...+.|.+
T Consensus 225 ~~~~~~-~-~~~~--~~~~~~~~~~~~~~~~~~spdg~~~~~~~-------~~g~~~l~~~--g~~~~----~~~~~v~~ 287 (582)
T 3o4h_A 225 PRDGSV-E-DLEL--PSKDFSSYRPTAITWLGYLPDGRLAVVAR-------REGRSAVFID--GERVE----APQGNHGR 287 (582)
T ss_dssp TTTCCE-E-ECCC--SCSHHHHHCCSEEEEEEECTTSCEEEEEE-------ETTEEEEEET--TEEEC----CCSSEEEE
T ss_pred CCCCcE-E-EccC--CCcChhhhhhccccceeEcCCCcEEEEEE-------cCCcEEEEEE--CCeec----cCCCceEE
Confidence 986543 2 4333 233466666 999998888888 8999999999 66544 23367889
Q ss_pred EEEcCCCCcEEEEecc
Q 048012 446 CAWHPKLNQIFATAGD 461 (616)
Q Consensus 446 ~~~~p~~~~l~~~~~d 461 (616)
++|+ ++..+++++.+
T Consensus 288 ~~~s-dg~~l~~~s~~ 302 (582)
T 3o4h_A 288 VVLW-RGKLVTSHTSL 302 (582)
T ss_dssp EEEE-TTEEEEEEEET
T ss_pred EEec-CCEEEEEEcCC
Confidence 9999 88777777764
No 143
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.88 E-value=3.1e-21 Score=217.38 Aligned_cols=294 Identities=13% Similarity=0.089 Sum_probs=199.3
Q ss_pred ccEEEEEECCCCCEEEEEEcCCcEEEEeCCCCccccccceecCCCCCCceEEEEecCCCCeEEEEeCCCeEEEEECCCCe
Q 048012 150 KIVSALAVDHSGSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSDRFLCVTGSAQAKIYDRDGLT 229 (616)
Q Consensus 150 ~~V~~v~~sp~g~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~s~d~~v~vwd~~~~~ 229 (616)
..|.+++|+|||++|++++. +.|++||+.++... ... ....+...+.+++|||+|++|++++ ++.|++||+.+..
T Consensus 109 ~~v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~--~~~-~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~ 183 (741)
T 2ecf_A 109 TGIVDYQWSPDAQRLLFPLG-GELYLYDLKQEGKA--AVR-QLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGR 183 (741)
T ss_dssp EESCCCEECTTSSEEEEEET-TEEEEEESSSCSTT--SCC-BCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTE
T ss_pred cCcceeEECCCCCEEEEEeC-CcEEEEECCCCCcc--eEE-EcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCCC
Confidence 45889999999999999986 99999999875100 011 1223456799999999999999887 4699999998876
Q ss_pred eeeEeeCceeEeecccCCCc--------ccceEEEEEcCCCCCEEEEEeCCC----------------------------
Q 048012 230 LGEFVKGDMYIRDLKNTKGH--------ICGLTCGEWHPKTKETILTSSEDG---------------------------- 273 (616)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~h--------~~~v~~~~~~p~~~~~l~s~s~Dg---------------------------- 273 (616)
...+...... ....++ ...+..+.|+|+++ .|++++.|+
T Consensus 184 ~~~~~~~~~~----~~~~g~~~~v~~~~~~~~~~~~~SpDg~-~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~ 258 (741)
T 2ecf_A 184 QMQLTADGST----TIGNGIAEFVADEEMDRHTGYWWAPDDS-AIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGD 258 (741)
T ss_dssp EEECCCCCCS----SEEESCCCHHHHHHSCCCCSEEECTTSS-CEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTS
T ss_pred EEEeccCCcc----ceeccccceeeeeccccccceEECCCCC-EEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCC
Confidence 4332110000 000000 11247899999986 566665554
Q ss_pred -----CEEEEECCC-ccccceEEeeeccCCCCccEEEEEECCCCCeEEEEeC-----CCcEEEEeCCCCCCCCCceeeec
Q 048012 274 -----SLRIWDVNE-FKSQKQVIKPKLARPGRVAVTTCAWDCDGKCIAGGIG-----DGSIQVWNLKPGWGSRPDIHVEK 342 (616)
Q Consensus 274 -----~v~iwd~~~-~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~g~~-----dg~I~iwd~~~~~~~~~~~~~~~ 342 (616)
.|++||+.+ ++... +.. ...+...+..++| |+|++|++++. +..|++||+.++ .....+.
T Consensus 259 ~~~~~~l~~~d~~~~~~~~~-~~~---~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g----~~~~~~~ 329 (741)
T 2ecf_A 259 ANVQVKLGVISPAEQAQTQW-IDL---GKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASN----QQRVLAH 329 (741)
T ss_dssp CCCEEEEEEECSSTTCCCEE-ECC---CSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTC----CEEEEEE
T ss_pred CCCeeEEEEEECCCCCceEE-ecC---CCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCC----ceEEEEE
Confidence 788999876 54322 111 1134557899999 99999987764 568999999876 3444444
Q ss_pred CCCC----CeEEEEEcCCCCeEEEEecCCcEEEEeCCCCCCcceEecCCCCCCcceeE-EECCCCCEEEEeeccccccCC
Q 048012 343 GHSD----DITALKFSSDGRILLSRSFDGSLKVWDLRKMKEPLKVFEDLPNNYAQTNV-AFSPDEQLFLTGTSVERESTT 417 (616)
Q Consensus 343 ~h~~----~V~~l~~spdg~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~v~~v-~fspdg~~l~~gs~~~~~~~~ 417 (616)
.|.. .+.+++|+|||++|++++.||.++||.+..... ...+.. +...+..+ .|+|+++.|+..+. .
T Consensus 330 ~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~~--~~~~v~~~~~~s~dg~~l~~~~~------~ 400 (741)
T 2ecf_A 330 ETSPTWVPLHNSLRFLDDGSILWSSERTGFQHLYRIDSKGK-AAALTH--GNWSVDELLAVDEKAGLAYFRAG------I 400 (741)
T ss_dssp EECSSCCCCCSCCEECTTSCEEEEECTTSSCEEEEECSSSC-EEESCC--SSSCEEEEEEEETTTTEEEEEEC------S
T ss_pred cCCCCcCCcCCceEECCCCeEEEEecCCCccEEEEEcCCCC-eeeeee--cceEEEeEeEEeCCCCEEEEEEe------C
Confidence 4432 456899999999999999999888887763333 444433 33447776 59999998876552 4
Q ss_pred Cc--eEEEEeCCC-CceEEEEecCCCCCeEEEEEcCCCCcEEEEeccCCCCceEEEecc
Q 048012 418 GG--LLCFYDREK-LELVSRVGISPACSVVQCAWHPKLNQIFATAGDKSQGGTHILYDP 473 (616)
Q Consensus 418 dg--~i~iwd~~~-~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~~~~~~~v~~~ 473 (616)
++ .++||++.. +..+..+.. ...+..+.|+|++++|++...+......+.+++.
T Consensus 401 ~~~~~~~l~~~~~~g~~~~~l~~--~~~~~~~~~spdg~~l~~~~~~~~~p~~~~l~~~ 457 (741)
T 2ecf_A 401 ESARESQIYAVPLQGGQPQRLSK--APGMHSASFARNASVYVDSWSNNSTPPQIELFRA 457 (741)
T ss_dssp SCTTCBEEEEEETTCCCCEECCC--SCSEEEEEECTTSSEEEEEEEETTEEEEEEEEET
T ss_pred CCCceEEEEEEEcCCCCeeeccc--CCCceEEEECCCCCEEEEEecCCCCCCeEEEEEc
Confidence 44 888998764 555566543 4568899999999999988764322234555543
No 144
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.88 E-value=1.6e-20 Score=189.65 Aligned_cols=263 Identities=11% Similarity=0.074 Sum_probs=180.6
Q ss_pred EecCCCCe-EEEEeCCCeEEEEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEEEECC
Q 048012 203 SWSPTSDR-FLCVTGSAQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVN 281 (616)
Q Consensus 203 ~~sp~g~~-l~~~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~ 281 (616)
.|.+++.+ +++.+.++.|++||..+.++... ...+...+ +++|+|++..+++++..++.|++||+.
T Consensus 4 ~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~------------~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~ 70 (331)
T 3u4y_A 4 MFQTTSNFGIVVEQHLRRISFFSTDTLEILNQ------------ITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQ 70 (331)
T ss_dssp ---CCCCEEEEEEGGGTEEEEEETTTCCEEEE------------EECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECS
T ss_pred eEcCCCCEEEEEecCCCeEEEEeCcccceeee------------EEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECC
Confidence 45566565 55667789999999987765322 12234455 999999986455555568999999998
Q ss_pred Cccc-cceEEeeeccCCCCccEEEEEECCCCCeEEEEeCCC---cEEEEeCCCCCCCCCceeeecCCCCCeEEEEEcCCC
Q 048012 282 EFKS-QKQVIKPKLARPGRVAVTTCAWDCDGKCIAGGIGDG---SIQVWNLKPGWGSRPDIHVEKGHSDDITALKFSSDG 357 (616)
Q Consensus 282 ~~~~-~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~g~~dg---~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~spdg 357 (616)
+++. ...+. . +.....+++|+|+|++|+++..++ .|++||+.++ ..+..+.. .....+++|+|+|
T Consensus 71 ~~~~~~~~~~-~-----~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~----~~~~~~~~-~~~~~~~~~spdg 139 (331)
T 3u4y_A 71 LEPPKVVAIQ-E-----GQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKN----KFISTIPI-PYDAVGIAISPNG 139 (331)
T ss_dssp SSSCEEEEEE-E-----CSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTT----EEEEEEEC-CTTEEEEEECTTS
T ss_pred CCceeEEecc-c-----CCCCccceEECCCCCEEEEecCCCCcccEEEEECCCC----CeEEEEEC-CCCccceEECCCC
Confidence 7664 22221 1 111333489999999999665553 8999999875 34444443 3457999999999
Q ss_pred CeEEEE-ecCCc-EEEEeCCCCCCcceE-ecCCCCCCcceeEEECCCCCEEEEeeccccccCCCceEEEEeCCCCce---
Q 048012 358 RILLSR-SFDGS-LKVWDLRKMKEPLKV-FEDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREKLEL--- 431 (616)
Q Consensus 358 ~~l~s~-s~Dg~-v~lwd~~~~~~~~~~-~~~~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~~~~--- 431 (616)
++|+++ ..++. |.+|++...+..... .........+..++|+|+|++|++++. .++.|++||+.+++.
T Consensus 140 ~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~------~~~~v~v~d~~~~~~~~~ 213 (331)
T 3u4y_A 140 NGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANL------IGNSIGILETQNPENITL 213 (331)
T ss_dssp SCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEET------TTTEEEEEECSSTTSCEE
T ss_pred CEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeC------CCCeEEEEECCCCcccce
Confidence 866655 45588 999999864432211 111123344789999999997766653 688999999999998
Q ss_pred EEEEecCCCCCeEEEEEcCCCCcEEEEeccCCCCceEEEecc----------------------------cCCCCCcEEE
Q 048012 432 VSRVGISPACSVVQCAWHPKLNQIFATAGDKSQGGTHILYDP----------------------------RLSERGALVC 483 (616)
Q Consensus 432 ~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~~~~~~~v~~~----------------------------~~s~~g~~l~ 483 (616)
+..+.. ...+..++|+|++++|+++... ++.+.+|++ +|+|+|++|+
T Consensus 214 ~~~~~~--~~~~~~~~~spdg~~l~v~~~~---~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~ 288 (331)
T 3u4y_A 214 LNAVGT--NNLPGTIVVSRDGSTVYVLTES---TVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLF 288 (331)
T ss_dssp EEEEEC--SSCCCCEEECTTSSEEEEECSS---EEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEE
T ss_pred eeeccC--CCCCceEEECCCCCEEEEEEcC---CCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEE
Confidence 777753 4667899999999988887753 445555552 5678888775
Q ss_pred Eec-CCcceecccccCCc
Q 048012 484 VAR-APRKKSVDDFEVAP 500 (616)
Q Consensus 484 s~~-~d~~~~~wd~~~~~ 500 (616)
+++ .++.+.+||+....
T Consensus 289 v~~~~~~~v~v~d~~~~~ 306 (331)
T 3u4y_A 289 ISANISRELKVFTISGKV 306 (331)
T ss_dssp EEETTTTEEEEEETTSCE
T ss_pred EecCCCCcEEEEEecCCc
Confidence 544 45678888876544
No 145
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.88 E-value=8.4e-21 Score=212.61 Aligned_cols=296 Identities=11% Similarity=0.096 Sum_probs=199.9
Q ss_pred ccEEEEEECCCCCEEEEEEcCCcEEEEeCCCCccccccceecCCCCCCceEEEEecCCCCeEEEEeCCCeEEEEECCC--
Q 048012 150 KIVSALAVDHSGSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSDRFLCVTGSAQAKIYDRDG-- 227 (616)
Q Consensus 150 ~~V~~v~~sp~g~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~s~d~~v~vwd~~~-- 227 (616)
..|.+++|+|+ .+++.+ .++.|++||+.+... ..+. .+...+.+++|||+|++|+++ .++.|++|++.+
T Consensus 82 ~~v~~~~~spd-~~~~~~-~~~~i~~~d~~~~~~-----~~l~-~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~ 152 (706)
T 2z3z_A 82 FPSFRTLDAGR-GLVVLF-TQGGLVGFDMLARKV-----TYLF-DTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLG 152 (706)
T ss_dssp CCCEEEEETTT-TEEEEE-ETTEEEEEETTTTEE-----EEEE-CCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTT
T ss_pred cCceeEEECCC-CeEEEE-ECCEEEEEECCCCce-----EEcc-CCcccccCCcCCCCCCEEEEE-ECCeEEEEecCccc
Confidence 57999999999 666555 469999999976421 1111 234458889999999999885 679999999987
Q ss_pred ---CeeeeEeeCce--eEeecccCCCcccceEEEEEcCCCCCEEEEEe--------------------------------
Q 048012 228 ---LTLGEFVKGDM--YIRDLKNTKGHICGLTCGEWHPKTKETILTSS-------------------------------- 270 (616)
Q Consensus 228 ---~~~~~~~~~~~--~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s-------------------------------- 270 (616)
........... ...-......+...+.++.|+|++. .|++++
T Consensus 153 ~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~-~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~ 231 (706)
T 2z3z_A 153 EGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGS-CLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTP 231 (706)
T ss_dssp SCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSS-EEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSC
T ss_pred ccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCC-EEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCC
Confidence 54322110000 0000000011112358899999985 777776
Q ss_pred -CCCCEEEEECCCccccceEEeeeccCCCCccEEEEEECCCCCeEEEEeCCC-----cEEEEeCCCCCCCCCceeee--c
Q 048012 271 -EDGSLRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWDCDGKCIAGGIGDG-----SIQVWNLKPGWGSRPDIHVE--K 342 (616)
Q Consensus 271 -~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~g~~dg-----~I~iwd~~~~~~~~~~~~~~--~ 342 (616)
.+..|++||+.+++..... ....+...+.+++|+|+|++|++++.++ .|++||+.++. ....+ .
T Consensus 232 ~~~~~l~~~d~~~~~~~~~~----~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~----~~~~~~~~ 303 (706)
T 2z3z_A 232 SHHVTVGIYHLATGKTVYLQ----TGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGR----FVRTLFVE 303 (706)
T ss_dssp CCEEEEEEEETTTTEEEECC----CCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCC----EEEEEEEE
T ss_pred CCeeEEEEEECCCCceEeec----cCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCc----eeeEEEEc
Confidence 4467999999875432111 1123444789999999999999988775 89999998751 22222 1
Q ss_pred CCCC---CeEEEEEcC--CCCeEEEEecCCcEEEEeCCCCCCcceEecCCCCCCccee-EEECCCCCEEEEeeccccccC
Q 048012 343 GHSD---DITALKFSS--DGRILLSRSFDGSLKVWDLRKMKEPLKVFEDLPNNYAQTN-VAFSPDEQLFLTGTSVEREST 416 (616)
Q Consensus 343 ~h~~---~V~~l~~sp--dg~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~v~~-v~fspdg~~l~~gs~~~~~~~ 416 (616)
.+.. .+.+++|+| ||++|++++.|+.++||++......+..+.. +...+.. ++|+|+++.|+.++.
T Consensus 304 ~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~--~~~~v~~~~~~spdg~~l~~~~~------ 375 (706)
T 2z3z_A 304 TDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTK--GEWEVTNFAGFDPKGTRLYFEST------ 375 (706)
T ss_dssp ECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECCC--SSSCEEEEEEECTTSSEEEEEES------
T ss_pred cCCCeECccCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEecCC--CCeEEEeeeEEcCCCCEEEEEec------
Confidence 2222 246789999 9999999999999999988633333444433 3344665 799999998877763
Q ss_pred CCc----eEEEEeCCCCceEEEEecCCCCCeEEEEEcCCCCcEEEEeccCCCCceEEEeccc
Q 048012 417 TGG----LLCFYDREKLELVSRVGISPACSVVQCAWHPKLNQIFATAGDKSQGGTHILYDPR 474 (616)
Q Consensus 417 ~dg----~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~~~~~~~v~~~~ 474 (616)
.++ .|+.||+.+++ +..+ .+...+..++|+|++++|++++.+......+.+|++.
T Consensus 376 ~~~~~~~~l~~~d~~~~~-~~~l--~~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~ 434 (706)
T 2z3z_A 376 EASPLERHFYCIDIKGGK-TKDL--TPESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIG 434 (706)
T ss_dssp SSCTTCBEEEEEETTCCC-CEES--CCSSSEEEEEECTTSSEEEEEEECSSCSCEEEEEESS
T ss_pred CCCCceEEEEEEEcCCCC-ceec--cCCCceEEEEECCCCCEEEEEecCCCCCcEEEEEECC
Confidence 333 78888888776 3333 2456789999999999998887643333668888875
No 146
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.88 E-value=3.9e-21 Score=189.94 Aligned_cols=239 Identities=14% Similarity=0.147 Sum_probs=171.3
Q ss_pred eEEecCCcccEEEEEECCCCCEEEEEEcCCcEEEEeCCC-CccccccceecCCC-CCCceEEEEecCCCCeEEEEe--CC
Q 048012 142 EIVLKGHTKIVSALAVDHSGSRVLSGSYDYTVRMYDFQG-MNSRLQSFRQLEPS-EGHQVRNLSWSPTSDRFLCVT--GS 217 (616)
Q Consensus 142 ~~~l~~H~~~V~~v~~sp~g~~lasgs~Dg~i~iwd~~~-~~~~~~~~~~~~~~-~~~~v~~l~~sp~g~~l~~~s--~d 217 (616)
...+..|...|.+++|+|+|++|++++ ++.|++||+.+ ... ..+... +...+.+++|+|++++|++++ .+
T Consensus 34 ~~~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~-----~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~ 107 (297)
T 2ojh_A 34 MRVVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSP-----EKVDTGFATICNNDHGISPDGALYAISDKVEF 107 (297)
T ss_dssp EEEEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSC-----EECCCTTCCCBCSCCEECTTSSEEEEEECTTT
T ss_pred eeeeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCc-----eEeccccccccccceEECCCCCEEEEEEeCCC
Confidence 345667899999999999999999987 88999999986 431 122222 235688999999999999998 33
Q ss_pred CeEEEE--ECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEEEECCCccccceEEeeecc
Q 048012 218 AQAKIY--DRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLA 295 (616)
Q Consensus 218 ~~v~vw--d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~ 295 (616)
+.+.|| +..+..... +..+ ..+.+++|+|++..++++++.++.++||++..........
T Consensus 108 ~~~~l~~~~~~~~~~~~-------------~~~~-~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~----- 168 (297)
T 2ojh_A 108 GKSAIYLLPSTGGTPRL-------------MTKN-LPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRL----- 168 (297)
T ss_dssp SSCEEEEEETTCCCCEE-------------CCSS-SSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEEC-----
T ss_pred CcceEEEEECCCCceEE-------------eecC-CCccceEECCCCCEEEEEECCCCceEEEEEECCCCcceEc-----
Confidence 445555 444443211 1222 2388899999986555588899999999964322111111
Q ss_pred CCCCccEEEEEECCCCCeEEEEe-CCCcEEEEeCCCCCCCCCceeeecCCCCCeEEEEEcCCCCeEEEEecC--------
Q 048012 296 RPGRVAVTTCAWDCDGKCIAGGI-GDGSIQVWNLKPGWGSRPDIHVEKGHSDDITALKFSSDGRILLSRSFD-------- 366 (616)
Q Consensus 296 ~~~~~~v~~~~~sp~g~~l~~g~-~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~D-------- 366 (616)
..+...+.+++|+|+|++|++++ .++.++||++... ......+..|...+.+++|+|+|++|++++.+
T Consensus 169 ~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~---~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~ 245 (297)
T 2ojh_A 169 THGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVD---GSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPR 245 (297)
T ss_dssp CCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETT---SSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCS
T ss_pred ccCCCccccceECCCCCEEEEEecCCCCccEEEECCC---CCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccc
Confidence 12334789999999999888766 5899999988632 13556677788889999999999999988876
Q ss_pred ---CcEEEEeCCCCCCcceEecCCCCCCcceeEEECCCCCEEEEee
Q 048012 367 ---GSLKVWDLRKMKEPLKVFEDLPNNYAQTNVAFSPDEQLFLTGT 409 (616)
Q Consensus 367 ---g~v~lwd~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~gs 409 (616)
+.|++||+.+... ........+...+.+++|+|++++|++++
T Consensus 246 ~~~~~l~~~d~~~~~~-~~~~~~~~~~~~~~~~~~spdg~~l~~~~ 290 (297)
T 2ojh_A 246 DLDVRVQLMDMDGGNV-ETLFDLFGGQGTMNSPNWSPDGDEFAYVR 290 (297)
T ss_dssp SEEEEEEEEETTSCSC-EEEEEEEESTTTSCSCCBCTTSSEEEEEE
T ss_pred cCceEEEEEecCCCCc-eeeeccCCCCcccccceECCCCCEEEEEE
Confidence 5699999986542 22222112334588999999999999887
No 147
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.88 E-value=8.1e-21 Score=193.40 Aligned_cols=293 Identities=13% Similarity=0.161 Sum_probs=188.6
Q ss_pred EEEEEEc----CCcEEEEeCCCCccccccceecCCCCCCceEEEEecCCCCeEEEEeC---CCeEEEEECCCCeeeeEee
Q 048012 163 RVLSGSY----DYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSDRFLCVTG---SAQAKIYDRDGLTLGEFVK 235 (616)
Q Consensus 163 ~lasgs~----Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~s~---d~~v~vwd~~~~~~~~~~~ 235 (616)
+|+.|++ ++.|.+|.+......+..+... .+...+..++|+|+|+ |++++. ++.|++|++.+..+...
T Consensus 4 ~~~vg~y~~~~~~~i~v~~~d~~tg~~~~~~~~--~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~-- 78 (347)
T 3hfq_A 4 RILFGTYTKKTSQGIYQGTLDTTAKTLTNDGLL--AATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKL-- 78 (347)
T ss_dssp EEEEEECCSSSCCEEEEEEEETTTTEEEEEEEE--EECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEE--
T ss_pred EEEEEeccCCCCCCEEEEEEcCCCCeEEEeeee--eccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEe--
Confidence 4455543 4568888776432222222211 2234577899999999 665554 58999999976654222
Q ss_pred CceeEeecccCCCcccceEEEEEcCCCCCEEEEEe-CCCCEEEEECCCccccceEEeeeccC------CCCccEEEEEEC
Q 048012 236 GDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSS-EDGSLRIWDVNEFKSQKQVIKPKLAR------PGRVAVTTCAWD 308 (616)
Q Consensus 236 ~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s-~Dg~v~iwd~~~~~~~~~~~~~~~~~------~~~~~v~~~~~s 308 (616)
.....+...+..++|+|++. +|++++ .+++|++|++........+....... .....+.+++|+
T Consensus 79 --------~~~~~~~~~p~~~a~spdg~-~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~s 149 (347)
T 3hfq_A 79 --------NTVVAPGTPPAYVAVDEARQ-LVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLT 149 (347)
T ss_dssp --------EEEEEESCCCSEEEEETTTT-EEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEEC
T ss_pred --------eeeecCCCCCEEEEECCCCC-EEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEEC
Confidence 12234566788999999985 566655 78999999996432222222111110 012248899999
Q ss_pred CCCCeEEEEeCCCcEEEEeCC-CCCCCCCceeeecC-CCCCeEEEEEcCCCCeEEE-EecCCcEEEEeCCCCCCc---ce
Q 048012 309 CDGKCIAGGIGDGSIQVWNLK-PGWGSRPDIHVEKG-HSDDITALKFSSDGRILLS-RSFDGSLKVWDLRKMKEP---LK 382 (616)
Q Consensus 309 p~g~~l~~g~~dg~I~iwd~~-~~~~~~~~~~~~~~-h~~~V~~l~~spdg~~l~s-~s~Dg~v~lwd~~~~~~~---~~ 382 (616)
|+|+++++...++.|++|++. .+ .......... ....+..++|+|||++|++ ...++.|.+|++...... +.
T Consensus 150 pdg~l~v~~~~~~~v~~~~~~~~g--~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~ 227 (347)
T 3hfq_A 150 PDNRLAVIDLGSDKVYVYNVSDAG--QLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLG 227 (347)
T ss_dssp TTSCEEEEETTTTEEEEEEECTTS--CEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEE
T ss_pred CCCcEEEEeCCCCEEEEEEECCCC--cEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEee
Confidence 999977777778999999998 33 1111122222 2336788999999996666 456889999998742211 22
Q ss_pred EecCCCCC----CcceeEEECCCCCEEEEeeccccccCCCceEEEEeCC---CCceEEEEecCCCCCeEEEEEcCCCCcE
Q 048012 383 VFEDLPNN----YAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDRE---KLELVSRVGISPACSVVQCAWHPKLNQI 455 (616)
Q Consensus 383 ~~~~~~~~----~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~---~~~~~~~~~~~~~~~v~~~~~~p~~~~l 455 (616)
.+...... ..+..++|+|||++|+++.. .++.|.+|++. +.+.+..+.. +...+..++|+|++++|
T Consensus 228 ~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~------~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~spdg~~l 300 (347)
T 3hfq_A 228 IVKTIPADYTAHNGAAAIRLSHDGHFLYVSNR------GYNTLAVFAVTADGHLTLIQQIST-EGDFPRDFDLDPTEAFV 300 (347)
T ss_dssp EEESSCTTCCSCCEEEEEEECTTSCEEEEEEE------TTTEEEEEEECGGGCEEEEEEEEC-SSSCCCEEEECTTSSEE
T ss_pred eeeecCCCCCCCCcceeEEECCCCCEEEEEeC------CCCEEEEEEECCCCcEEEeEEEec-CCCCcCeEEECCCCCEE
Confidence 22222221 34788999999998865542 68999999987 2344444443 34457899999999999
Q ss_pred EEEeccCCCCceEEEecccCCCCCcEE
Q 048012 456 FATAGDKSQGGTHILYDPRLSERGALV 482 (616)
Q Consensus 456 ~~~~~d~~~~~~~~v~~~~~s~~g~~l 482 (616)
+++..+ ++.+.+|.+.. ..|++.
T Consensus 301 ~v~~~~---~~~v~v~~~d~-~tg~l~ 323 (347)
T 3hfq_A 301 VVVNQN---TDNATLYARDL-TSGKLS 323 (347)
T ss_dssp EEEETT---TTEEEEEEECT-TTCCEE
T ss_pred EEEEcC---CCcEEEEEEeC-CCCeEE
Confidence 998874 67889996642 235544
No 148
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.88 E-value=2.9e-20 Score=189.34 Aligned_cols=274 Identities=11% Similarity=0.128 Sum_probs=175.6
Q ss_pred ecCCcccEEEEEECCCCCEEEEEEc---CCcEEEEeCCCCccccccceecCCCCCCceEEEEecCCCCeEEEEe-CCCeE
Q 048012 145 LKGHTKIVSALAVDHSGSRVLSGSY---DYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSDRFLCVT-GSAQA 220 (616)
Q Consensus 145 l~~H~~~V~~v~~sp~g~~lasgs~---Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~s-~d~~v 220 (616)
+..+...+..++|+|+|+ |++++. ++.|++|++.++.. ..+... ..+...+..++|+|+|++|++++ .++.|
T Consensus 35 ~~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~--~~~~~~-~~~~~~p~~~a~spdg~~l~~~~~~~~~v 110 (347)
T 3hfq_A 35 LLAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTA--HKLNTV-VAPGTPPAYVAVDEARQLVYSANYHKGTA 110 (347)
T ss_dssp EEEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEE--EEEEEE-EEESCCCSEEEEETTTTEEEEEETTTTEE
T ss_pred eeeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcE--EEeeee-ecCCCCCEEEEECCCCCEEEEEeCCCCEE
Confidence 345567788899999999 555544 68999999965421 111111 12355688999999999998888 67999
Q ss_pred EEEECCC-CeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEEEECCCccccceEEeeeccCCCC
Q 048012 221 KIYDRDG-LTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPGR 299 (616)
Q Consensus 221 ~vwd~~~-~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~ 299 (616)
.+|++.. ..+.........-... ....+...+.+++|+|++. ++++...++.|++|++.............. ...
T Consensus 111 ~v~~~~~~g~~~~~~~~~~~~~~p-~~~~~~~~~~~~~~spdg~-l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~--~~g 186 (347)
T 3hfq_A 111 EVMKIAADGALTLTDTVQHSGHGP-RPEQDGSHIHYTDLTPDNR-LAVIDLGSDKVYVYNVSDAGQLSEQSVLTM--EAG 186 (347)
T ss_dssp EEEEECTTSCEEEEEEEECCCCCS-STTCSSCCEEEEEECTTSC-EEEEETTTTEEEEEEECTTSCEEEEEEEEC--CTT
T ss_pred EEEEeCCCCCeeecceeecCCCCC-CccccCCCceEEEECCCCc-EEEEeCCCCEEEEEEECCCCcEEEeeeEEc--CCC
Confidence 9999862 2222111000000000 0112344688999999986 888888889999999983222222211111 111
Q ss_pred ccEEEEEECCCCCeEEE-EeCCCcEEEEeCCCCCCCCCceeeecCCC------CCeEEEEEcCCCCeE-EEEecCCcEEE
Q 048012 300 VAVTTCAWDCDGKCIAG-GIGDGSIQVWNLKPGWGSRPDIHVEKGHS------DDITALKFSSDGRIL-LSRSFDGSLKV 371 (616)
Q Consensus 300 ~~v~~~~~sp~g~~l~~-g~~dg~I~iwd~~~~~~~~~~~~~~~~h~------~~V~~l~~spdg~~l-~s~s~Dg~v~l 371 (616)
..+..++|+|+|++|++ +..++.|++|++.........+....... ..+..++|+|||++| ++...++.|.+
T Consensus 187 ~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v 266 (347)
T 3hfq_A 187 FGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAV 266 (347)
T ss_dssp CCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEE
T ss_pred CCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEE
Confidence 25678999999996665 55688999999874211111222222222 348899999999977 45556899999
Q ss_pred EeCCCCCCcceEecCC-CCCCcceeEEECCCCCEEEEeeccccccCCCceEEEE--eCCCCceEE
Q 048012 372 WDLRKMKEPLKVFEDL-PNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFY--DREKLELVS 433 (616)
Q Consensus 372 wd~~~~~~~~~~~~~~-~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iw--d~~~~~~~~ 433 (616)
|++...+. +..+... .+...+..++|+|||++|++++. .++.|.+| |..++++..
T Consensus 267 ~~~~~~g~-~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~------~~~~v~v~~~d~~tg~l~~ 324 (347)
T 3hfq_A 267 FAVTADGH-LTLIQQISTEGDFPRDFDLDPTEAFVVVVNQ------NTDNATLYARDLTSGKLSL 324 (347)
T ss_dssp EEECGGGC-EEEEEEEECSSSCCCEEEECTTSSEEEEEET------TTTEEEEEEECTTTCCEEE
T ss_pred EEECCCCc-EEEeEEEecCCCCcCeEEECCCCCEEEEEEc------CCCcEEEEEEeCCCCeEEe
Confidence 99974322 2222111 12344789999999999988873 45899999 666777653
No 149
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.88 E-value=5.3e-20 Score=188.48 Aligned_cols=291 Identities=11% Similarity=0.097 Sum_probs=185.1
Q ss_pred CcccEEEEEECCCCCEEEEEEcC----CcEEEEeCCCCccccccceecCCCCCCceEEEEecCCCCeEEEEe-CCCeEEE
Q 048012 148 HTKIVSALAVDHSGSRVLSGSYD----YTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSDRFLCVT-GSAQAKI 222 (616)
Q Consensus 148 H~~~V~~v~~sp~g~~lasgs~D----g~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~s-~d~~v~v 222 (616)
|...+..++|+|+|++|++++.+ +.|.+|++......+..+... ..++.....+++ ++++|++++ .++.|.+
T Consensus 48 ~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~-~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~ 124 (361)
T 3scy_A 48 EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQ-KTMGADPCYLTT--NGKNIVTANYSGGSITV 124 (361)
T ss_dssp ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEE-ECSSSCEEEEEE--CSSEEEEEETTTTEEEE
T ss_pred cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEe-ccCCCCcEEEEE--CCCEEEEEECCCCEEEE
Confidence 67788889999999999999986 799999987532222222222 123445777888 888887776 5789999
Q ss_pred EECCCCe-eeeEeeCceeE-eecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEEEECCCccc------cceE-Eeee
Q 048012 223 YDRDGLT-LGEFVKGDMYI-RDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKS------QKQV-IKPK 293 (616)
Q Consensus 223 wd~~~~~-~~~~~~~~~~~-~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~------~~~~-~~~~ 293 (616)
|++.... +.......... ........+...+.+++|+|++..+++++..++.|++|++..... .... ....
T Consensus 125 ~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~ 204 (361)
T 3scy_A 125 FPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEA 204 (361)
T ss_dssp EEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEE
T ss_pred EEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccc
Confidence 9987432 21110000000 000011223445788999999865566666689999999875432 1111 0001
Q ss_pred ccCCCCccEEEEEECCCCCeEEEEe-CCCcEEEEeCCCCCCCCCcee---eecCCCCCeEEEEEcCCCCeEEEEecC--C
Q 048012 294 LARPGRVAVTTCAWDCDGKCIAGGI-GDGSIQVWNLKPGWGSRPDIH---VEKGHSDDITALKFSSDGRILLSRSFD--G 367 (616)
Q Consensus 294 ~~~~~~~~v~~~~~sp~g~~l~~g~-~dg~I~iwd~~~~~~~~~~~~---~~~~h~~~V~~l~~spdg~~l~s~s~D--g 367 (616)
........+..++|+|+|++|++++ .++.|.+|++.++ ....+. ....+...+..++|+|||++|+++..+ +
T Consensus 205 ~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g--~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~ 282 (361)
T 3scy_A 205 FKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADG--MLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKAD 282 (361)
T ss_dssp EECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETT--EEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSC
T ss_pred eecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCC--ceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCC
Confidence 1112223578999999999887777 6899999999864 111122 223344557899999999998776654 8
Q ss_pred cEEEEeCCCCCCcceEecCCCCCCcceeEEECCCCCEEEEeeccccccCCCceEEEE--eCCCCceEEEEecCCCCCeEE
Q 048012 368 SLKVWDLRKMKEPLKVFEDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFY--DREKLELVSRVGISPACSVVQ 445 (616)
Q Consensus 368 ~v~lwd~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iw--d~~~~~~~~~~~~~~~~~v~~ 445 (616)
.|.+|++......+..+........+..++|+|+|++|++++. .++.|.+| |..++++.......+...+.|
T Consensus 283 ~i~v~~~~~~~g~~~~~~~~~~g~~~~~~~~spdg~~l~~~~~------~~~~v~v~~~d~~~g~~~~~~~~~~~~~p~~ 356 (361)
T 3scy_A 283 GVAIFKVDETNGTLTKVGYQLTGIHPRNFIITPNGKYLLVACR------DTNVIQIFERDQATGLLTDIKKDIKVDKPVC 356 (361)
T ss_dssp EEEEEEECTTTCCEEEEEEEECSSCCCEEEECTTSCEEEEEET------TTTEEEEEEECTTTCCEEECSCCEECSSEEE
T ss_pred EEEEEEEcCCCCcEEEeeEecCCCCCceEEECCCCCEEEEEEC------CCCCEEEEEEECCCCcEeecceeeeCCCCeE
Confidence 9999999632111222221112345889999999999988873 56889995 556777654432223356888
Q ss_pred EEEc
Q 048012 446 CAWH 449 (616)
Q Consensus 446 ~~~~ 449 (616)
++|.
T Consensus 357 v~~~ 360 (361)
T 3scy_A 357 LKFV 360 (361)
T ss_dssp EEEE
T ss_pred EEEc
Confidence 8885
No 150
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.87 E-value=3.1e-20 Score=189.09 Aligned_cols=275 Identities=13% Similarity=0.096 Sum_probs=196.8
Q ss_pred CceEEEEecCCCCeEEEEeC-------CCeEEEEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEE
Q 048012 197 HQVRNLSWSPTSDRFLCVTG-------SAQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTS 269 (616)
Q Consensus 197 ~~v~~l~~sp~g~~l~~~s~-------d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~ 269 (616)
..+..++|+|++++|++++. ++.|.+||..+.++..... ....+..++|+|+++.+++++
T Consensus 41 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~-------------~~~~~~~~~~s~dg~~l~v~~ 107 (353)
T 3vgz_A 41 KGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIH-------------NDLKPFGATINNTTQTLWFGN 107 (353)
T ss_dssp SSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEE-------------ESSCCCSEEEETTTTEEEEEE
T ss_pred cCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEe-------------cCCCcceEEECCCCCEEEEEe
Confidence 34889999999999888774 5689999998766433211 122367789999986567777
Q ss_pred eCCCCEEEEECCCccccceEEeeeccC---CCCccEEEEEECCCCCeEEEEe--CCCcEEEEeCCCCCCCCCceeeecCC
Q 048012 270 SEDGSLRIWDVNEFKSQKQVIKPKLAR---PGRVAVTTCAWDCDGKCIAGGI--GDGSIQVWNLKPGWGSRPDIHVEKGH 344 (616)
Q Consensus 270 s~Dg~v~iwd~~~~~~~~~~~~~~~~~---~~~~~v~~~~~sp~g~~l~~g~--~dg~I~iwd~~~~~~~~~~~~~~~~h 344 (616)
..++.|.+||+.+++....+....... .....+.+++|+|+|+++++++ .++.|.+||+.++ .....+..+
T Consensus 108 ~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~----~~~~~~~~~ 183 (353)
T 3vgz_A 108 TVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNI----KLKTAIQNT 183 (353)
T ss_dssp TTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTT----EEEEEECCC
T ss_pred cCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCC----ceEEEecCC
Confidence 778999999998876554443211100 0111378899999999887776 4789999999875 455555556
Q ss_pred CCCeEEEEEcCCCCeEEEEecCCcEEEEeCCCCCCcceEecCC--CCCCcceeEEECCCCCEEEEeeccccccCCCceEE
Q 048012 345 SDDITALKFSSDGRILLSRSFDGSLKVWDLRKMKEPLKVFEDL--PNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLC 422 (616)
Q Consensus 345 ~~~V~~l~~spdg~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~--~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~ 422 (616)
...+.+++|+|+|++|++++.++.|.+||+.+... +..+... .....+..++|+|++++|+++.. .++.|.
T Consensus 184 ~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~-~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~------~~~~v~ 256 (353)
T 3vgz_A 184 GKMSTGLALDSEGKRLYTTNADGELITIDTADNKI-LSRKKLLDDGKEHFFINISLDTARQRAFITDS------KAAEVL 256 (353)
T ss_dssp CTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEE-EEEEECCCSSSCCCEEEEEEETTTTEEEEEES------SSSEEE
T ss_pred CCccceEEECCCCCEEEEEcCCCeEEEEECCCCeE-EEEEEcCCCCCCcccceEEECCCCCEEEEEeC------CCCEEE
Confidence 66689999999999999999999999999987543 3333221 12334778999999998887763 569999
Q ss_pred EEeCCCCceEEEEecCCCCCeEEEEEcCCCCcEEEEeccCCCCceEEEecccCCCCCcEEEEecCCcceecccccCCcee
Q 048012 423 FYDREKLELVSRVGISPACSVVQCAWHPKLNQIFATAGDKSQGGTHILYDPRLSERGALVCVARAPRKKSVDDFEVAPVI 502 (616)
Q Consensus 423 iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~~~~~~~v~~~~~s~~g~~l~s~~~d~~~~~wd~~~~~~~ 502 (616)
+||+.+++.+..+.... ...++|+|++++++++... ++.+.+|++. .++.+....... ....+.
T Consensus 257 ~~d~~~~~~~~~~~~~~---~~~~~~s~dg~~l~v~~~~---~~~v~~~d~~---~~~~~~~~~~~~-------~~~~~~ 320 (353)
T 3vgz_A 257 VVDTRNGNILAKVAAPE---SLAVLFNPARNEAYVTHRQ---AGKVSVIDAK---SYKVVKTFDTPT-------HPNSLA 320 (353)
T ss_dssp EEETTTCCEEEEEECSS---CCCEEEETTTTEEEEEETT---TTEEEEEETT---TTEEEEEEECCS-------EEEEEE
T ss_pred EEECCCCcEEEEEEcCC---CceEEECCCCCEEEEEECC---CCeEEEEECC---CCeEEEEEecCC-------CCCeEE
Confidence 99999999998887533 3579999999988888764 6788888865 344443322211 123456
Q ss_pred eCCCCCCcc
Q 048012 503 HNPHALPLF 511 (616)
Q Consensus 503 ~~p~~~~l~ 511 (616)
|+|++..++
T Consensus 321 ~s~dg~~l~ 329 (353)
T 3vgz_A 321 LSADGKTLY 329 (353)
T ss_dssp ECTTSCEEE
T ss_pred EcCCCCEEE
Confidence 677666554
No 151
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.87 E-value=1.6e-19 Score=184.94 Aligned_cols=294 Identities=13% Similarity=0.132 Sum_probs=188.5
Q ss_pred CEEEEEEc----CCcEEEEeCCCCccccccceecCCCCCCceEEEEecCCCCeEEEEeCC----CeEEEEECCC--Ceee
Q 048012 162 SRVLSGSY----DYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSDRFLCVTGS----AQAKIYDRDG--LTLG 231 (616)
Q Consensus 162 ~~lasgs~----Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~s~d----~~v~vwd~~~--~~~~ 231 (616)
.+++.|++ ++.|.+|.+......+...... +...+..++|+|+|++|++++.+ +.|.+|+++. +.+.
T Consensus 14 ~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~---~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~ 90 (361)
T 3scy_A 14 LTMLVGTYTSGNSKGIYTFRFNEETGESLPLSDA---EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLH 90 (361)
T ss_dssp EEEEEEECCSSSCCEEEEEEEETTTCCEEEEEEE---ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEE
T ss_pred eEEEEEeccCCCCCCEEEEEEeCCCCCEEEeecc---cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEE
Confidence 35555543 5689999875433233322222 45567889999999999998875 7999998765 3332
Q ss_pred eEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEEEECCCccccceEEeeec--------cCCCCccEE
Q 048012 232 EFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKPKL--------ARPGRVAVT 303 (616)
Q Consensus 232 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~--------~~~~~~~v~ 303 (616)
.. .....+......+++ ++..++++...+++|.+|++........+..... .......+.
T Consensus 91 ~~----------~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~ 158 (361)
T 3scy_A 91 LL----------NTQKTMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLH 158 (361)
T ss_dssp EE----------EEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEE
T ss_pred Ee----------eEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcce
Confidence 21 112223445666777 5644444444788999999975443322211110 011123468
Q ss_pred EEEECCCCCeEEEEe-CCCcEEEEeCCCCCCC--CC-c------eeeecCCCCCeEEEEEcCCCCeEEEEe-cCCcEEEE
Q 048012 304 TCAWDCDGKCIAGGI-GDGSIQVWNLKPGWGS--RP-D------IHVEKGHSDDITALKFSSDGRILLSRS-FDGSLKVW 372 (616)
Q Consensus 304 ~~~~sp~g~~l~~g~-~dg~I~iwd~~~~~~~--~~-~------~~~~~~h~~~V~~l~~spdg~~l~s~s-~Dg~v~lw 372 (616)
+++|+|+|++|++++ .++.|++|++...... .. . ......+...+..++|+|||++|++++ .++.|.+|
T Consensus 159 ~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~ 238 (361)
T 3scy_A 159 CVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAF 238 (361)
T ss_dssp EEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEE
T ss_pred EEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEE
Confidence 899999999766655 4889999998764210 01 1 122233455688999999999888777 68999999
Q ss_pred eCCCCCC-cceEecCCC-CCCcceeEEECCCCCEEEEeeccccccCC-CceEEEEeCC--CCc--eEEEEecCCCCCeEE
Q 048012 373 DLRKMKE-PLKVFEDLP-NNYAQTNVAFSPDEQLFLTGTSVERESTT-GGLLCFYDRE--KLE--LVSRVGISPACSVVQ 445 (616)
Q Consensus 373 d~~~~~~-~~~~~~~~~-~~~~v~~v~fspdg~~l~~gs~~~~~~~~-dg~i~iwd~~--~~~--~~~~~~~~~~~~v~~ 445 (616)
|+.++.. .+..+.... +...+..++|+|||++|+++.. . ++.|.+|++. +++ .+..+.. ...+..
T Consensus 239 ~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~------~~~~~i~v~~~~~~~g~~~~~~~~~~--g~~~~~ 310 (361)
T 3scy_A 239 RYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNR------LKADGVAIFKVDETNGTLTKVGYQLT--GIHPRN 310 (361)
T ss_dssp EEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEEC------SSSCEEEEEEECTTTCCEEEEEEEEC--SSCCCE
T ss_pred EecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECC------CCCCEEEEEEEcCCCCcEEEeeEecC--CCCCce
Confidence 9985321 122222221 2234678999999999987762 3 5899999985 455 3444433 456789
Q ss_pred EEEcCCCCcEEEEeccCCCCceEEEecccCCCCCcEE
Q 048012 446 CAWHPKLNQIFATAGDKSQGGTHILYDPRLSERGALV 482 (616)
Q Consensus 446 ~~~~p~~~~l~~~~~d~~~~~~~~v~~~~~s~~g~~l 482 (616)
++|+|++++|++++.+ ++.+.+|.+.. ..|++.
T Consensus 311 ~~~spdg~~l~~~~~~---~~~v~v~~~d~-~~g~~~ 343 (361)
T 3scy_A 311 FIITPNGKYLLVACRD---TNVIQIFERDQ-ATGLLT 343 (361)
T ss_dssp EEECTTSCEEEEEETT---TTEEEEEEECT-TTCCEE
T ss_pred EEECCCCCEEEEEECC---CCCEEEEEEEC-CCCcEe
Confidence 9999999999998864 67888876653 234443
No 152
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.87 E-value=1.5e-20 Score=211.02 Aligned_cols=299 Identities=10% Similarity=0.128 Sum_probs=191.3
Q ss_pred EEecCCcc---cEEEEEECCCCCEEEEEEcC---------CcEEEEeCCCCccccccceecCCCCCCceEEEEecCCCCe
Q 048012 143 IVLKGHTK---IVSALAVDHSGSRVLSGSYD---------YTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSDR 210 (616)
Q Consensus 143 ~~l~~H~~---~V~~v~~sp~g~~lasgs~D---------g~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~ 210 (616)
..+.+|.. .|.+++|||||++|++++.+ +.|++||+.++.. ..+. ....+...+..++|||+|++
T Consensus 51 ~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~--~~l~-~~~~~~~~~~~~~~SPdG~~ 127 (723)
T 1xfd_A 51 VLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDP--QSLD-PPEVSNAKLQYAGWGPKGQQ 127 (723)
T ss_dssp EEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCC--EECC-CTTCCSCCCSBCCBCSSTTC
T ss_pred EEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCce--Eecc-CCccccccccccEECCCCCE
Confidence 45556654 49999999999999999875 7888999987532 1111 11223335889999999999
Q ss_pred EEEEeCCCeEEEEECCCCeeeeEeeCceeEeecccCCCcc---------cceEEEEEcCCCCCEEEEEeCCC--------
Q 048012 211 FLCVTGSAQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHI---------CGLTCGEWHPKTKETILTSSEDG-------- 273 (616)
Q Consensus 211 l~~~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~---------~~v~~~~~~p~~~~~l~s~s~Dg-------- 273 (616)
|++++. +.|++|++.+............ -....++. ..+.++.|+|++. .|++++.|+
T Consensus 128 la~~~~-~~i~~~~~~~g~~~~~~~~~~~---~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~-~la~~~~~~~~~~~~~~ 202 (723)
T 1xfd_A 128 LIFIFE-NNIYYCAHVGKQAIRVVSTGKE---GVIYNGLSDWLYEEEILKTHIAHWWSPDGT-RLAYAAINDSRVPIMEL 202 (723)
T ss_dssp EEEEET-TEEEEESSSSSCCEEEECCCBT---TTEEEEECCHHHHHTTSSSSEEEEECTTSS-EEEEEEEECTTSCEEEE
T ss_pred EEEEEC-CeEEEEECCCCceEEEecCCCC---CceECcccceeEEEEeccCcceEEECCCCC-EEEEEEECCCccceEEe
Confidence 998886 7999999987664332111000 00000111 1347899999985 677766442
Q ss_pred --------------------------CEEEEECCCccccceEEeeeccCCCCccEEEEEECCCCCeEEEEeC----CCcE
Q 048012 274 --------------------------SLRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWDCDGKCIAGGIG----DGSI 323 (616)
Q Consensus 274 --------------------------~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~g~~----dg~I 323 (616)
+|++||+.+++....+........+...+.+++|+|+|++|++... +..|
T Consensus 203 ~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i 282 (723)
T 1xfd_A 203 PTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSIL 282 (723)
T ss_dssp CCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEE
T ss_pred eccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEE
Confidence 7899999876543333211111112447899999999999877653 3579
Q ss_pred EEEeCCCCCCCCCceeeec-CCCCCe----EEEEEcCCCCeEEEE--ecCC------cEEEEeCCCCCC--cceEecCCC
Q 048012 324 QVWNLKPGWGSRPDIHVEK-GHSDDI----TALKFSSDGRILLSR--SFDG------SLKVWDLRKMKE--PLKVFEDLP 388 (616)
Q Consensus 324 ~iwd~~~~~~~~~~~~~~~-~h~~~V----~~l~~spdg~~l~s~--s~Dg------~v~lwd~~~~~~--~~~~~~~~~ 388 (616)
++||+.++ .....+. .|...+ ..++|+|||+.|+.. ..++ .|.+||+...+. +...+..
T Consensus 283 ~~~d~~~g----~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~-- 356 (723)
T 1xfd_A 283 TLCDATTG----VCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITS-- 356 (723)
T ss_dssp EEEETTTC----CEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCC--
T ss_pred EEEeCCCC----cceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeec--
Confidence 99999876 3333332 234444 388999999987754 4566 467777323332 0222221
Q ss_pred CCCccee-EEECCCCCEEEEeeccccccCCC--ceEEEEeCCCCc--eEEEEecC--CCCCeEEEEEcCCCCcEEEEecc
Q 048012 389 NNYAQTN-VAFSPDEQLFLTGTSVERESTTG--GLLCFYDREKLE--LVSRVGIS--PACSVVQCAWHPKLNQIFATAGD 461 (616)
Q Consensus 389 ~~~~v~~-v~fspdg~~l~~gs~~~~~~~~d--g~i~iwd~~~~~--~~~~~~~~--~~~~v~~~~~~p~~~~l~~~~~d 461 (616)
....+.. ++|+|||++|+..+. .+ +.++||++.... ....+... +...+..++|+|++++|+..+..
T Consensus 357 ~~~~~~~~~~~spdg~~l~~~~~------~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~spdg~~l~~~~~~ 430 (723)
T 1xfd_A 357 GDWDVTKILAYDEKGNKIYFLST------EDLPRRRQLYSANTVGNFNRQCLSCDLVENCTYFSASFSHSMDFFLLKCEG 430 (723)
T ss_dssp SSSCEEEEEEEETTTTEEEEEES------SSCTTCCEEEEECSSTTCCCBCSSTTSSSSCCCCEEEECTTSSEEEEECCS
T ss_pred CCeEEEeeeEEcCCCCEEEEEEc------CCCCcceEEEEEeCCCCCCcceecccccCCCCeEEEEECCCCCEEEEEccC
Confidence 2233444 699999999987662 33 788899876432 23333221 34568899999999999887664
No 153
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.86 E-value=6.8e-20 Score=185.05 Aligned_cols=270 Identities=15% Similarity=0.104 Sum_probs=186.7
Q ss_pred CEEEEEEcCCcEEEEeCCCCccccccceecCCCCCC-ceEEEEecCCCCeEEEE-eCCCeEEEEECCCCeeeeEeeCcee
Q 048012 162 SRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGH-QVRNLSWSPTSDRFLCV-TGSAQAKIYDRDGLTLGEFVKGDMY 239 (616)
Q Consensus 162 ~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~-~v~~l~~sp~g~~l~~~-s~d~~v~vwd~~~~~~~~~~~~~~~ 239 (616)
++|++++.++.|++||+.++.. ...+...+.. .+..++|+|++++++++ ..++.|.+||+.+.+......
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~----~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~---- 73 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAV----DKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRID---- 73 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEE----EEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEE----
T ss_pred cEEEEcCCCCeEEEEECCCCcE----EEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEE----
Confidence 4789999999999999986531 1222211211 47889999999876554 457899999998765432211
Q ss_pred EeecccCCCcccceEEEEEcCCCCCEEEEEe------------CCCCEEEEECCCccccceEEeeeccCCCCccEEEEEE
Q 048012 240 IRDLKNTKGHICGLTCGEWHPKTKETILTSS------------EDGSLRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAW 307 (616)
Q Consensus 240 ~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s------------~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 307 (616)
......|...+.+++|+|++. +|++++ .++.|++||+.+++....+.. + ..+.+++|
T Consensus 74 ---~~~~~~~~~~~~~~~~s~dg~-~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-----~--~~~~~~~~ 142 (337)
T 1pby_B 74 ---LSTPEERVKSLFGAALSPDGK-TLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-----P--RQITMLAW 142 (337)
T ss_dssp ---CCBTTEEEECTTCEEECTTSS-EEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-----C--SSCCCEEE
T ss_pred ---cCCcccccccccceEECCCCC-EEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-----C--CCcceeEE
Confidence 000011233567899999885 666665 579999999987654433321 1 14678899
Q ss_pred CCCCCeEEEEeCCCcEEEEeCCCCCCCCCceeeecCCCCCeEEEEEcCCCCeEEEEecCC--------------------
Q 048012 308 DCDGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHSDDITALKFSSDGRILLSRSFDG-------------------- 367 (616)
Q Consensus 308 sp~g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg-------------------- 367 (616)
+|+|++|+++ ++.|++||+.++ .....+..+.. ...+.|+|++.+|+..+..+
T Consensus 143 s~dg~~l~~~--~~~i~~~d~~~~----~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (337)
T 1pby_B 143 ARDGSKLYGL--GRDLHVMDPEAG----TLVEDKPIQSW-EAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPT 215 (337)
T ss_dssp CTTSSCEEEE--SSSEEEEETTTT----EEEEEECSTTT-TTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGG
T ss_pred CCCCCEEEEe--CCeEEEEECCCC----cEeeeeecccc-CCCceeCCCccEEeeeccCCCceeeeeecccccccccccc
Confidence 9999988888 689999999876 34444433321 11337899998776554332
Q ss_pred ----cEEEEeCCCCCCcceEecCCCCCCcceeEEECCCCCEEEEeeccccccCCCceEEEEeCCCCceEEEEecCCCCCe
Q 048012 368 ----SLKVWDLRKMKEPLKVFEDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREKLELVSRVGISPACSV 443 (616)
Q Consensus 368 ----~v~lwd~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v 443 (616)
.|.+||+.+.... .+........+.+++|+|++++|+++. +.|++||+.+++.+..+... ..+
T Consensus 216 ~~~~~v~~~d~~~~~~~--~~~~~~~~~~~~~~~~s~dg~~l~~~~---------~~v~~~d~~~~~~~~~~~~~--~~~ 282 (337)
T 1pby_B 216 AYRTGLLTMDLETGEMA--MREVRIMDVFYFSTAVNPAKTRAFGAY---------NVLESFDLEKNASIKRVPLP--HSY 282 (337)
T ss_dssp GEEEEEEEEETTTCCEE--EEEEEECSSCEEEEEECTTSSEEEEEE---------SEEEEEETTTTEEEEEEECS--SCC
T ss_pred ccccceEEEeCCCCCce--EeecCCCCCceeeEEECCCCCEEEEeC---------CeEEEEECCCCcCcceecCC--Cce
Confidence 4689999875432 222222334578899999999999873 78999999999988887643 457
Q ss_pred EEEEEcCCCCcEEEEeccCCCCceEEEeccc
Q 048012 444 VQCAWHPKLNQIFATAGDKSQGGTHILYDPR 474 (616)
Q Consensus 444 ~~~~~~p~~~~l~~~~~d~~~~~~~~v~~~~ 474 (616)
.+++|+|++++|++++. ++.+.+|++.
T Consensus 283 ~~~~~s~dg~~l~~~~~----~~~i~v~d~~ 309 (337)
T 1pby_B 283 YSVNVSTDGSTVWLGGA----LGDLAAYDAE 309 (337)
T ss_dssp CEEEECTTSCEEEEESB----SSEEEEEETT
T ss_pred eeEEECCCCCEEEEEcC----CCcEEEEECc
Confidence 88999999998888755 6788888875
No 154
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.85 E-value=2.5e-20 Score=195.55 Aligned_cols=224 Identities=14% Similarity=0.103 Sum_probs=154.1
Q ss_pred ceEEEEecCCCCeEEEEeCCCeEEEEECCCCeeeeEee---CceeEeecccCCCcccceEEEEEcCCCCCEEE----EEe
Q 048012 198 QVRNLSWSPTSDRFLCVTGSAQAKIYDRDGLTLGEFVK---GDMYIRDLKNTKGHICGLTCGEWHPKTKETIL----TSS 270 (616)
Q Consensus 198 ~v~~l~~sp~g~~l~~~s~d~~v~vwd~~~~~~~~~~~---~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~----s~s 270 (616)
.+..+++++++.++++++.++ ++||+........... .............+...|.+++|+|++. +|+ +++
T Consensus 38 ~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~-~lav~~~sgs 115 (434)
T 2oit_A 38 RSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNL-TLSACMMSSE 115 (434)
T ss_dssp CCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSC-EEEEEEEETT
T ss_pred CccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCC-EEEEEEeccC
Confidence 478899999999999988887 8898754211000000 0000000111123566799999999884 677 788
Q ss_pred CCCCEEEEECCCc-----cccceEEeeeccCCCCccEEEEEECCC-CCeEEEEeCCCcEEEEeCCCCCCCCCceeeecCC
Q 048012 271 EDGSLRIWDVNEF-----KSQKQVIKPKLARPGRVAVTTCAWDCD-GKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGH 344 (616)
Q Consensus 271 ~Dg~v~iwd~~~~-----~~~~~~~~~~~~~~~~~~v~~~~~sp~-g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~h 344 (616)
.|++|+|||+.+. +....+.......+|...|.+++|+|+ +++|++++.||+|++||++++ ..+....+|
T Consensus 116 ~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~----~~~~~~~~~ 191 (434)
T 2oit_A 116 YGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTET----VKVCATLPS 191 (434)
T ss_dssp TEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSS----EEEEEEECG
T ss_pred CCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCC----cceeeccCC
Confidence 9999999998754 111111112222356678999999998 889999999999999999875 344556678
Q ss_pred CCCeEEEEEcCCCCeEEEEecCCcEEEEeCCCCCCcceEecCCC-----CCCcceeEEECCCCCEEEEeeccccccCCCc
Q 048012 345 SDDITALKFSSDGRILLSRSFDGSLKVWDLRKMKEPLKVFEDLP-----NNYAQTNVAFSPDEQLFLTGTSVERESTTGG 419 (616)
Q Consensus 345 ~~~V~~l~~spdg~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~-----~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg 419 (616)
...|++++|+|+|++|++++.||+|++||++ +. ....+..+. +...+.+++|++++.++++.+..........
T Consensus 192 ~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~-~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~ 269 (434)
T 2oit_A 192 TVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQ-EKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSP 269 (434)
T ss_dssp GGCEEEEEECTTSSCEEEEETTSCEEEECTT-CC-EEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCC
T ss_pred CCceeEEEEcCCCCEEEEEcCCCcEEEEccC-Cc-ccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCC
Confidence 8999999999999999999999999999998 32 233333221 2236899999999988876553110001123
Q ss_pred eEEEEeCCCC
Q 048012 420 LLCFYDREKL 429 (616)
Q Consensus 420 ~i~iwd~~~~ 429 (616)
.+++|++.+.
T Consensus 270 ~v~i~~l~~~ 279 (434)
T 2oit_A 270 DVVMALLPKK 279 (434)
T ss_dssp EEEEEECCCT
T ss_pred ceEEEEeccC
Confidence 4899998765
No 155
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.83 E-value=1.1e-19 Score=203.95 Aligned_cols=279 Identities=11% Similarity=0.034 Sum_probs=178.7
Q ss_pred EEEECCCCCEEEEEEcCCcEEEEeCCCCccccccceecCCCCC---CceEEEEecCCCCeEEEEeC---------CCeEE
Q 048012 154 ALAVDHSGSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEG---HQVRNLSWSPTSDRFLCVTG---------SAQAK 221 (616)
Q Consensus 154 ~v~~sp~g~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~---~~v~~l~~sp~g~~l~~~s~---------d~~v~ 221 (616)
.++|+|+|+++++ +.|++|++||+.++... .+...+. ..+.+++|||||++|++++. ++.|+
T Consensus 20 ~~~~s~dg~~~~~-~~d~~i~~~~~~~g~~~-----~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~ 93 (719)
T 1z68_A 20 FPNWISGQEYLHQ-SADNNIVLYNIETGQSY-----TILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYY 93 (719)
T ss_dssp CCEESSSSEEEEE-CTTSCEEEEESSSCCEE-----EEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEE
T ss_pred ccEECCCCeEEEE-cCCCCEEEEEcCCCcEE-----EEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEE
Confidence 6799999965554 56999999999875421 1111111 13889999999999998876 68999
Q ss_pred EEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEEEECCCccccceEEeeeccC----C
Q 048012 222 IYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLAR----P 297 (616)
Q Consensus 222 vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~----~ 297 (616)
+||+.+++... ...+ ...+..++|+|+++ .|+.+. ++.|++||+.++.... +....... +
T Consensus 94 ~~d~~~g~~~~----------~~~l---~~~~~~~~~SPDG~-~la~~~-~~~i~~~~~~~g~~~~-l~~~~~~~~v~~g 157 (719)
T 1z68_A 94 IYDLSNGEFVR----------GNEL---PRPIQYLCWSPVGS-KLAYVY-QNNIYLKQRPGDPPFQ-ITFNGRENKIFNG 157 (719)
T ss_dssp EEETTTTEECC----------SSCC---CSSBCCEEECSSTT-CEEEEE-TTEEEEESSTTSCCEE-CCCCCBTTTEEES
T ss_pred EEECCCCcccc----------ceec---CcccccceECCCCC-EEEEEE-CCeEEEEeCCCCCcEE-EecCCCcCCeEcc
Confidence 99999876410 0111 24578899999986 566665 7899999998765422 11100000 0
Q ss_pred CC---------ccEEEEEECCCCCeEEEEeCCC----------------------------------cEEEEeCCCCCCC
Q 048012 298 GR---------VAVTTCAWDCDGKCIAGGIGDG----------------------------------SIQVWNLKPGWGS 334 (616)
Q Consensus 298 ~~---------~~v~~~~~sp~g~~l~~g~~dg----------------------------------~I~iwd~~~~~~~ 334 (616)
+. ....+++|+|||++|++++.|. .|++||+.++...
T Consensus 158 ~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~ 237 (719)
T 1z68_A 158 IPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYV 237 (719)
T ss_dssp SCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHH
T ss_pred cccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCcc
Confidence 00 0124899999999999987652 7889999875100
Q ss_pred -CCce---eeecCCCCCeEEEEEcCCCCeEEEEecCC----cEEEEe----CCCCCCcceEec--CCCCCCcce-----e
Q 048012 335 -RPDI---HVEKGHSDDITALKFSSDGRILLSRSFDG----SLKVWD----LRKMKEPLKVFE--DLPNNYAQT-----N 395 (616)
Q Consensus 335 -~~~~---~~~~~h~~~V~~l~~spdg~~l~s~s~Dg----~v~lwd----~~~~~~~~~~~~--~~~~~~~v~-----~ 395 (616)
...+ ..+.+|...+.+++|+||++++++....+ .|.+|| +.++. ....+. ...+...+. .
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~ 316 (719)
T 1z68_A 238 GPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWD-CPKTQEHIEESRTGWAGGFFVST 316 (719)
T ss_dssp CCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEE-CCGGGEEEEECSSSCSSSSSCCC
T ss_pred ceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCc-eEEEEecccccCCceEccccCCc
Confidence 0000 22346888899999999988777754332 488899 66533 222221 011223344 7
Q ss_pred EEECCCCCEEEEeeccccccCCCceEEEEeCCCCceEEEEecCCCCCeEEEEEcCCCCcEEEEecc
Q 048012 396 VAFSPDEQLFLTGTSVERESTTGGLLCFYDREKLELVSRVGISPACSVVQCAWHPKLNQIFATAGD 461 (616)
Q Consensus 396 v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d 461 (616)
++|+|||+.|+...+.. .....|++||+.+++ ...+. .+...+..+.+. +++.|+..+.+
T Consensus 317 ~~~spdg~~l~~~~~~~---~g~~~l~~~~~~~~~-~~~lt-~~~~~v~~~~~~-d~~~i~~~~~~ 376 (719)
T 1z68_A 317 PVFSYDAISYYKIFSDK---DGYKHIHYIKDTVEN-AIQIT-SGKWEAINIFRV-TQDSLFYSSNE 376 (719)
T ss_dssp CEECTTSSCEEEEEECT---TSCEEEEEESSCSTT-CEECS-CSSSCEEEEEEE-CSSEEEEEESC
T ss_pred cEECCCCCeEEEEEEcc---CCceEEEEEECCCCc-eEecc-cCceEEEEEEEE-eCCEEEEEEec
Confidence 89999999766532100 023478888988777 34443 234457777777 77888777653
No 156
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.83 E-value=6.1e-19 Score=179.05 Aligned_cols=249 Identities=14% Similarity=0.070 Sum_probs=171.6
Q ss_pred EEEECCCCCEEEEEEcCCcEEEEeCCCCccccccceecCCCCCCceEEEEecCCCCeEEEE-eCCCeEEEEECCCCeeee
Q 048012 154 ALAVDHSGSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSDRFLCV-TGSAQAKIYDRDGLTLGE 232 (616)
Q Consensus 154 ~v~~sp~g~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~-s~d~~v~vwd~~~~~~~~ 232 (616)
.+++++++.++++++.++.|++||+.++.. ...+.......+..++|+|++++++++ ..++.|.+||+.+.+...
T Consensus 4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~----~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~ 79 (349)
T 1jmx_B 4 GPALKAGHEYMIVTNYPNNLHVVDVASDTV----YKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTF 79 (349)
T ss_dssp CCCCCTTCEEEEEEETTTEEEEEETTTTEE----EEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEE
T ss_pred cccccCCCEEEEEeCCCCeEEEEECCCCcE----EEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEE
Confidence 457888899999999999999999986431 111211122247889999999876554 468999999998776432
Q ss_pred EeeCceeEeecccC-CCcccceEEEEEcCCCCCEEEEEeCC------------CCEEEEECCCccccceEEeeeccCCCC
Q 048012 233 FVKGDMYIRDLKNT-KGHICGLTCGEWHPKTKETILTSSED------------GSLRIWDVNEFKSQKQVIKPKLARPGR 299 (616)
Q Consensus 233 ~~~~~~~~~~~~~~-~~h~~~v~~~~~~p~~~~~l~s~s~D------------g~v~iwd~~~~~~~~~~~~~~~~~~~~ 299 (616)
... +... ..+...+.+++|+|+++ +|++++.+ +.|.+||+.+++....+..... .
T Consensus 80 ~~~-------~~~~~~~~~~~~~~~~~spdg~-~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~----~ 147 (349)
T 1jmx_B 80 HAN-------LSSVPGEVGRSMYSFAISPDGK-EVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPM----P 147 (349)
T ss_dssp EEE-------SCCSTTEEEECSSCEEECTTSS-EEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEEC----C
T ss_pred EEE-------cccccccccccccceEECCCCC-EEEEEcccccccccccccCCCeEEEEECCCccccceeeeccC----C
Confidence 211 0000 00133477899999985 67766654 8999999987543332221111 1
Q ss_pred ccEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCCCCCceeeecCC-----------------------------------
Q 048012 300 VAVTTCAWDCDGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGH----------------------------------- 344 (616)
Q Consensus 300 ~~v~~~~~sp~g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~h----------------------------------- 344 (616)
..+.+++|+|+|+ +++++ +.|++||+.++. ....+..+
T Consensus 148 ~~~~~~~~s~dg~-l~~~~--~~i~~~d~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (349)
T 1jmx_B 148 RQVYLMRAADDGS-LYVAG--PDIYKMDVKTGK----YTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFK 220 (349)
T ss_dssp SSCCCEEECTTSC-EEEES--SSEEEECTTTCC----EEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-
T ss_pred CcccceeECCCCc-EEEcc--CcEEEEeCCCCc----eeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecC
Confidence 1478899999999 55553 449999998752 22222111
Q ss_pred ---------------------------------CCCeEEEEEcC-CCCeEEEEecCCcEEEEeCCCCCCcceEecCCCCC
Q 048012 345 ---------------------------------SDDITALKFSS-DGRILLSRSFDGSLKVWDLRKMKEPLKVFEDLPNN 390 (616)
Q Consensus 345 ---------------------------------~~~V~~l~~sp-dg~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~ 390 (616)
...+.+++|+| ++++|+++ ++.|.+||+.+.+ .+..+.. .
T Consensus 221 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~-~~~~~~~---~ 294 (349)
T 1jmx_B 221 DDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRK-LIKAANL---D 294 (349)
T ss_dssp ------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTE-EEEEEEC---S
T ss_pred CCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCe-EEEEEcC---C
Confidence 12456788889 99999988 8899999998743 3333332 2
Q ss_pred CcceeEEECCCCCEEEEeeccccccCCCceEEEEeCCCCceEEEEecC
Q 048012 391 YAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREKLELVSRVGIS 438 (616)
Q Consensus 391 ~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~~~~~~~~~~~ 438 (616)
..+.+++|+|++++|++++ .++.|.+||+.+++.+..+...
T Consensus 295 ~~~~~~~~s~dg~~l~~~~-------~~~~v~v~d~~~~~~~~~~~~~ 335 (349)
T 1jmx_B 295 HTYYCVAFDKKGDKLYLGG-------TFNDLAVFNPDTLEKVKNIKLP 335 (349)
T ss_dssp SCCCEEEECSSSSCEEEES-------BSSEEEEEETTTTEEEEEEECS
T ss_pred CCccceEECCCCCEEEEec-------CCCeEEEEeccccceeeeeecC
Confidence 3478899999999998876 7899999999999999888764
No 157
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.83 E-value=7.4e-19 Score=177.43 Aligned_cols=258 Identities=15% Similarity=0.083 Sum_probs=180.2
Q ss_pred CeEEEEeCCCeEEEEECCCCeeeeEeeCceeEeecccCCCccc-ceEEEEEcCCCCCEEEEEeCCCCEEEEECCCccccc
Q 048012 209 DRFLCVTGSAQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHIC-GLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQK 287 (616)
Q Consensus 209 ~~l~~~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~-~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~ 287 (616)
++|++++.++.|++||..+.++..... .++.. .+..++|+|++..+++++..++.|.+||+.+++...
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~-----------~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~ 70 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAVDKVIT-----------IADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLG 70 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEE-----------CTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEE
T ss_pred cEEEEcCCCCeEEEEECCCCcEEEEEE-----------cCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEe
Confidence 468889999999999998776532211 12211 367899999986566777788999999998866544
Q ss_pred eEEeeeccCCCCccEEEEEECCCCCeEEEEe------------CCCcEEEEeCCCCCCCCCceeeecCCCCCeEEEEEcC
Q 048012 288 QVIKPKLARPGRVAVTTCAWDCDGKCIAGGI------------GDGSIQVWNLKPGWGSRPDIHVEKGHSDDITALKFSS 355 (616)
Q Consensus 288 ~~~~~~~~~~~~~~v~~~~~sp~g~~l~~g~------------~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp 355 (616)
.+.... ...+...+.+++|+|+|++|+++. .++.|++||+.++ .....+.. ...+.+++|+|
T Consensus 71 ~~~~~~-~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~----~~~~~~~~-~~~~~~~~~s~ 144 (337)
T 1pby_B 71 RIDLST-PEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETL----SRRKAFEA-PRQITMLAWAR 144 (337)
T ss_dssp EEECCB-TTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTT----EEEEEEEC-CSSCCCEEECT
T ss_pred eEEcCC-cccccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCC----cEEEEEeC-CCCcceeEECC
Confidence 333211 000011356789999999998886 5799999999865 34444433 44688899999
Q ss_pred CCCeEEEEecCCcEEEEeCCCCCCcceEecCCCCCCcceeEEECCCCCEEEEeeccccccCCCc----------------
Q 048012 356 DGRILLSRSFDGSLKVWDLRKMKEPLKVFEDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGG---------------- 419 (616)
Q Consensus 356 dg~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg---------------- 419 (616)
+|++|+++ ++.|++||+.++. ....+..... ...+.|+|++++|+.... .++
T Consensus 145 dg~~l~~~--~~~i~~~d~~~~~-~~~~~~~~~~---~~~~~~s~dg~~l~~~~~------~~~~~~~~~~~~~~~~~~~ 212 (337)
T 1pby_B 145 DGSKLYGL--GRDLHVMDPEAGT-LVEDKPIQSW---EAETYAQPDVLAVWNQHE------SSGVMATPFYTARKDIDPA 212 (337)
T ss_dssp TSSCEEEE--SSSEEEEETTTTE-EEEEECSTTT---TTTTBCCCBCCCCCCCCT------TTTEEEEEEEEEBTTSCTT
T ss_pred CCCEEEEe--CCeEEEEECCCCc-Eeeeeecccc---CCCceeCCCccEEeeecc------CCCceeeeeeccccccccc
Confidence 99988888 6899999998653 3333332221 123478999997766542 122
Q ss_pred -------eEEEEeCCCCceEEEEec-CCCCCeEEEEEcCCCCcEEEEeccCCCCceEEEe------------------cc
Q 048012 420 -------LLCFYDREKLELVSRVGI-SPACSVVQCAWHPKLNQIFATAGDKSQGGTHILY------------------DP 473 (616)
Q Consensus 420 -------~i~iwd~~~~~~~~~~~~-~~~~~v~~~~~~p~~~~l~~~~~d~~~~~~~~v~------------------~~ 473 (616)
.|.+||+.+++.. .+.. .+...+..++|+|++++|+++.. .+.+| .+
T Consensus 213 ~~~~~~~~v~~~d~~~~~~~-~~~~~~~~~~~~~~~~s~dg~~l~~~~~------~v~~~d~~~~~~~~~~~~~~~~~~~ 285 (337)
T 1pby_B 213 DPTAYRTGLLTMDLETGEMA-MREVRIMDVFYFSTAVNPAKTRAFGAYN------VLESFDLEKNASIKRVPLPHSYYSV 285 (337)
T ss_dssp SGGGEEEEEEEEETTTCCEE-EEEEEECSSCEEEEEECTTSSEEEEEES------EEEEEETTTTEEEEEEECSSCCCEE
T ss_pred cccccccceEEEeCCCCCce-EeecCCCCCceeeEEECCCCCEEEEeCC------eEEEEECCCCcCcceecCCCceeeE
Confidence 5799999999876 3332 23456889999999999888721 33333 36
Q ss_pred cCCCCCcEEEEecCCcceecccccCCcee
Q 048012 474 RLSERGALVCVARAPRKKSVDDFEVAPVI 502 (616)
Q Consensus 474 ~~s~~g~~l~s~~~d~~~~~wd~~~~~~~ 502 (616)
+|+|+|++|++++.++.+.+||+.....+
T Consensus 286 ~~s~dg~~l~~~~~~~~i~v~d~~~~~~~ 314 (337)
T 1pby_B 286 NVSTDGSTVWLGGALGDLAAYDAETLEKK 314 (337)
T ss_dssp EECTTSCEEEEESBSSEEEEEETTTCCEE
T ss_pred EECCCCCEEEEEcCCCcEEEEECcCCcEE
Confidence 68899998888888899999998765543
No 158
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.82 E-value=1.6e-18 Score=177.92 Aligned_cols=292 Identities=9% Similarity=0.075 Sum_probs=179.2
Q ss_pred EEEEEEcC--CcEEEEeCCCCccccccceecCCCCCCceEEEEecCCCCeEEEEeCCCeEEEEECC-CCeeeeEeeCcee
Q 048012 163 RVLSGSYD--YTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSDRFLCVTGSAQAKIYDRD-GLTLGEFVKGDMY 239 (616)
Q Consensus 163 ~lasgs~D--g~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~s~d~~v~vwd~~-~~~~~~~~~~~~~ 239 (616)
+|+.|++. +.|.+|++......+..+..........+..++|+|+|++|++++.+ .|.+|++. .+.+.....
T Consensus 4 ~~~vg~~~~~~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~---- 78 (365)
T 1jof_A 4 HLMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEAS---- 78 (365)
T ss_dssp EEEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEE----
T ss_pred EEEEEEccCCCcEEEEEEECCCCCEEEeeEEccCCCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeE----
Confidence 45566653 46888776432222222222111223357889999999999988887 99999986 554322110
Q ss_pred EeecccCCCcccceEEEEEcCCCCC-EEEEEe-------------CCCCEEEEECCC-ccccceEEeeeccCCCCccEEE
Q 048012 240 IRDLKNTKGHICGLTCGEWHPKTKE-TILTSS-------------EDGSLRIWDVNE-FKSQKQVIKPKLARPGRVAVTT 304 (616)
Q Consensus 240 ~~~~~~~~~h~~~v~~~~~~p~~~~-~l~s~s-------------~Dg~v~iwd~~~-~~~~~~~~~~~~~~~~~~~v~~ 304 (616)
. ...+ .+.+++|+|++.. ++++++ .++++++|++.. +.....+.... ..+...+.+
T Consensus 79 ---~-~~~g---~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~--~~~~~~~~~ 149 (365)
T 1jof_A 79 ---H-PIGG---HPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYE--YQENTGIHG 149 (365)
T ss_dssp ---E-ECCS---SGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEE--CCTTCCEEE
T ss_pred ---e-ecCC---CCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEE--eCCCCcceE
Confidence 0 0112 2345789998853 344543 689999999974 33222221111 112236899
Q ss_pred EEECCCCCeEEEEeC-CCcEEEEeCC-CCCCCCCceeeec--CCCCCeEEEEEcCCCCeEEEEec-CCcEEEEeCCC--C
Q 048012 305 CAWDCDGKCIAGGIG-DGSIQVWNLK-PGWGSRPDIHVEK--GHSDDITALKFSSDGRILLSRSF-DGSLKVWDLRK--M 377 (616)
Q Consensus 305 ~~~sp~g~~l~~g~~-dg~I~iwd~~-~~~~~~~~~~~~~--~h~~~V~~l~~spdg~~l~s~s~-Dg~v~lwd~~~--~ 377 (616)
++|+|+|++|+++.. ++.|++||+. ++ ....+..+. .|...+..++|+|||++|++++. +++|.+|++.. +
T Consensus 150 ~~~spdG~~l~~~~~~~~~v~~~~~~~~g--~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g 227 (365)
T 1jof_A 150 MVFDPTETYLYSADLTANKLWTHRKLASG--EVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATH 227 (365)
T ss_dssp EEECTTSSEEEEEETTTTEEEEEEECTTS--CEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTC
T ss_pred EEECCCCCEEEEEcCCCCEEEEEEECCCC--CEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCC
Confidence 999999998887764 6799999998 54 111222232 24567999999999999988775 68999998753 2
Q ss_pred CCc--ceEecCCCCC----C-------cceeEE-ECCCCCEEEEeeccccccCCCceEEEEeCC-CCceEEEEe-c-CCC
Q 048012 378 KEP--LKVFEDLPNN----Y-------AQTNVA-FSPDEQLFLTGTSVERESTTGGLLCFYDRE-KLELVSRVG-I-SPA 440 (616)
Q Consensus 378 ~~~--~~~~~~~~~~----~-------~v~~v~-fspdg~~l~~gs~~~~~~~~dg~i~iwd~~-~~~~~~~~~-~-~~~ 440 (616)
... ...+...+.. . .+..++ |+|||++|+++.... .....+.|.+|++. ++++..... . .+.
T Consensus 228 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~-~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~ 306 (365)
T 1jof_A 228 MPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRAN-KFELQGYIAGFKLRDCGSIEKQLFLSPTPT 306 (365)
T ss_dssp CEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEES-STTSCCEEEEEEECTTSCEEEEEEEEECSS
T ss_pred cEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCC-CCCCCCeEEEEEECCCCCEEEeeeeeecCC
Confidence 211 1122222211 1 478899 999999998776200 00001289999986 666543211 1 123
Q ss_pred CCeEEEEEcC---CCCcEEEEeccCCCCceEEEeccc
Q 048012 441 CSVVQCAWHP---KLNQIFATAGDKSQGGTHILYDPR 474 (616)
Q Consensus 441 ~~v~~~~~~p---~~~~l~~~~~d~~~~~~~~v~~~~ 474 (616)
..+..++|+| ++++|+++..+ ++.+.||++.
T Consensus 307 ~~~~~~a~sp~~~dg~~l~v~~~~---~~~v~v~~~~ 340 (365)
T 1jof_A 307 SGGHSNAVSPCPWSDEWMAITDDQ---EGWLEIYRWK 340 (365)
T ss_dssp CCTTCCCEEECTTCTTEEEEECSS---SCEEEEEEEE
T ss_pred CCcccceecCCCcCCCEEEEEEcC---CCeEEEEEEc
Confidence 3456778888 78888887764 5778888775
No 159
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.82 E-value=1e-18 Score=180.51 Aligned_cols=298 Identities=15% Similarity=0.086 Sum_probs=185.3
Q ss_pred eEEecCCcccEEE-----EEECCCCCEEEEEEc-CCc--EEEEeCCCCccccccceecCCCCCCceEEEEecCCCCeEEE
Q 048012 142 EIVLKGHTKIVSA-----LAVDHSGSRVLSGSY-DYT--VRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSDRFLC 213 (616)
Q Consensus 142 ~~~l~~H~~~V~~-----v~~sp~g~~lasgs~-Dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~ 213 (616)
...|..|...+.. .+|+|||++|+.++. ++. |.+||+.++. ...+...+...+..+.|+|+|++|+.
T Consensus 23 ~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~-----~~~lt~~~~~~~~~~~~spdg~~l~~ 97 (388)
T 3pe7_A 23 VTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQV-----ATQLTEGRGDNTFGGFLSPDDDALFY 97 (388)
T ss_dssp EEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCE-----EEECCCSSCBCSSSCEECTTSSEEEE
T ss_pred eEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCc-----eEEeeeCCCCCccceEEcCCCCEEEE
Confidence 3456667666666 889999999999887 674 8888887652 23333344444556789999999999
Q ss_pred EeCCCeEEEEECCCCeeeeEeeCceeEeecccCCCcccceEEE--EEcCCCCCEEEEE----------------------
Q 048012 214 VTGSAQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCG--EWHPKTKETILTS---------------------- 269 (616)
Q Consensus 214 ~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~--~~~p~~~~~l~s~---------------------- 269 (616)
++.++.|++||+.+.+.... ...+...+... .+++++. +++..
T Consensus 98 ~~~~~~l~~~d~~~g~~~~~------------~~~~~~~~~~~~~~~~~dg~-~l~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (388)
T 3pe7_A 98 VKDGRNLMRVDLATLEENVV------------YQVPAEWVGYGTWVANSDCT-KLVGIEIRREDWVPLTDWKKFHEFYFT 164 (388)
T ss_dssp EETTTEEEEEETTTCCEEEE------------EECCTTEEEEEEEEECTTSS-EEEEEEEEGGGCCCCCSHHHHHHHGGG
T ss_pred EeCCCeEEEEECCCCcceee------------eechhhcccccceeECCCCC-eeccccccCcccccccccchhhhhhcc
Confidence 99999999999998764322 11222333333 3478774 55532
Q ss_pred eCCCCEEEEECCCccccceEEeeeccCCCCccEEEEEECC-CCCeEEEEeCC------CcEEEEeCCCCCCCCCceeeec
Q 048012 270 SEDGSLRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWDC-DGKCIAGGIGD------GSIQVWNLKPGWGSRPDIHVEK 342 (616)
Q Consensus 270 s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~g~~l~~g~~d------g~I~iwd~~~~~~~~~~~~~~~ 342 (616)
..+..|++||+.+++.. .+.. +...+..++|+| +|+.|+....+ ..|.++|+..+ ....+.
T Consensus 165 ~~~~~l~~~d~~~g~~~-~l~~------~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~-----~~~~l~ 232 (388)
T 3pe7_A 165 KPCCRLMRVDLKTGEST-VILQ------ENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGT-----NMRKVK 232 (388)
T ss_dssp CCCEEEEEEETTTCCEE-EEEE------ESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSC-----CCEESC
T ss_pred CCcceEEEEECCCCceE-Eeec------CCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCC-----ceEEee
Confidence 24467999999876432 2221 112578999999 99998887753 37888887654 223333
Q ss_pred CCC--CCeEEEEEcCCCCeEEEEecC-C----cEEEEeCCCCCCc-ceEecCCCCC-CcceeEEECCCCCEEEEeecccc
Q 048012 343 GHS--DDITALKFSSDGRILLSRSFD-G----SLKVWDLRKMKEP-LKVFEDLPNN-YAQTNVAFSPDEQLFLTGTSVER 413 (616)
Q Consensus 343 ~h~--~~V~~l~~spdg~~l~s~s~D-g----~v~lwd~~~~~~~-~~~~~~~~~~-~~v~~v~fspdg~~l~~gs~~~~ 413 (616)
.+. ..+..++|+|||+.|+..+.+ + .|++||+.++... +..+....+. .....++|+|||++|+.......
T Consensus 233 ~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~ 312 (388)
T 3pe7_A 233 THAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDS 312 (388)
T ss_dssp CCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC--------
T ss_pred eCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeecc
Confidence 343 357889999999988665532 2 3999999875421 1111110000 00223479999998886531000
Q ss_pred --ccCCCceEEEEeCCCCceEEEEecCCCC-----------CeEEEEEcCCCCcEEEEeccCCCCceEEEeccc
Q 048012 414 --ESTTGGLLCFYDREKLELVSRVGISPAC-----------SVVQCAWHPKLNQIFATAGDKSQGGTHILYDPR 474 (616)
Q Consensus 414 --~~~~dg~i~iwd~~~~~~~~~~~~~~~~-----------~v~~~~~~p~~~~l~~~~~d~~~~~~~~v~~~~ 474 (616)
....+..|++||+.+++.. .+.. +.. .+..++|+|+++.|+.++.. ++...||.+.
T Consensus 313 ~~~~~~~~~i~~~d~~~~~~~-~l~~-~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~---~g~~~l~~~~ 381 (388)
T 3pe7_A 313 GYKIENDPFLYVFNMKNGTQH-RVAR-HDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDV---HGKPALYLAT 381 (388)
T ss_dssp ----CCCCEEEEEETTTTEEE-EEEE-CCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECT---TSSCEEEEEE
T ss_pred ccccCCCCEEEEEeccCCceE-Eecc-ccCcccccccccccCCCCccCCCCCCEEEEEecC---CCceeEEEEE
Confidence 0014678999999987754 3332 222 36677888888877777653 3444455544
No 160
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.81 E-value=4.5e-18 Score=191.22 Aligned_cols=277 Identities=12% Similarity=0.085 Sum_probs=177.5
Q ss_pred ccEEEEEECCCCCEEEEEEcCCcEEEEeCCCCccccccceecCCCCCC--ceEEEEecCCCCeEEEEeCC---------C
Q 048012 150 KIVSALAVDHSGSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGH--QVRNLSWSPTSDRFLCVTGS---------A 218 (616)
Q Consensus 150 ~~V~~v~~sp~g~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~--~v~~l~~sp~g~~l~~~s~d---------~ 218 (616)
....+++|+|+|++|+++ |++|++||+.++... .+......... ....+.|||||++|++++.+ +
T Consensus 17 ~~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~ 92 (740)
T 4a5s_A 17 LKLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSS--VFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTA 92 (740)
T ss_dssp CCCCCEEECSSSEEEEEE--TTEEEEEETTTCCEE--EEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEE
T ss_pred ccccccEECCCCcEEEEc--CCcEEEEECCCCceE--EEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccce
Confidence 345688999999999886 999999999876421 11111111111 23458999999999998876 5
Q ss_pred eEEEEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEEEECCCccccceEEeeeccCCC
Q 048012 219 QAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPG 298 (616)
Q Consensus 219 ~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~ 298 (616)
.+.+||+.++++ ..+..|...+...+|+|+|+ .|+.+. ++.|++||+.++... .+.. .++
T Consensus 93 ~~~~~d~~~~~~-------------~~l~~~~~~~~~~~~SPdG~-~la~~~-~~~i~~~~~~~~~~~-~lt~----~g~ 152 (740)
T 4a5s_A 93 SYDIYDLNKRQL-------------ITEERIPNNTQWVTWSPVGH-KLAYVW-NNDIYVKIEPNLPSY-RITW----TGK 152 (740)
T ss_dssp EEEEEETTTTEE-------------CCSSCCCTTEEEEEECSSTT-CEEEEE-TTEEEEESSTTSCCE-ECCS----CCB
T ss_pred EEEEEECCCCcE-------------EEcccCCCcceeeEECCCCC-EEEEEE-CCeEEEEECCCCceE-EEcC----CCC
Confidence 667999998764 22456677899999999996 556654 689999999876532 1111 111
Q ss_pred Cc-----------------cEEEEEECCCCCeEEEEeCCC------------------------------------cEEE
Q 048012 299 RV-----------------AVTTCAWDCDGKCIAGGIGDG------------------------------------SIQV 325 (616)
Q Consensus 299 ~~-----------------~v~~~~~sp~g~~l~~g~~dg------------------------------------~I~i 325 (616)
.. ....+.|||||+.||.++.|. .|++
T Consensus 153 ~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v 232 (740)
T 4a5s_A 153 EDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFV 232 (740)
T ss_dssp TTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEE
T ss_pred ccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEE
Confidence 11 123588999999999875332 4788
Q ss_pred EeCCC---CCCCCCceeeec------CCCCCeEEEEEcCCCCeEEEEec----CCcEEEEeCCCCCC------cceEecC
Q 048012 326 WNLKP---GWGSRPDIHVEK------GHSDDITALKFSSDGRILLSRSF----DGSLKVWDLRKMKE------PLKVFED 386 (616)
Q Consensus 326 wd~~~---~~~~~~~~~~~~------~h~~~V~~l~~spdg~~l~s~s~----Dg~v~lwd~~~~~~------~~~~~~~ 386 (616)
||+.+ +. ......+. +|...+..++|+|||++++.... +..|++||+.++.. ....+..
T Consensus 233 ~d~~~~~~~~--~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~ 310 (740)
T 4a5s_A 233 VNTDSLSSVT--NATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEM 310 (740)
T ss_dssp EETTSCCSSS--CCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEE
T ss_pred EECCCCCCCC--cceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeec
Confidence 88876 41 00122222 37778999999999997776543 33799999987641 1111111
Q ss_pred CCCCCcc-----eeEEECCCCCEEE-EeeccccccCCCceEEEEeCCCCceEEEEecCCCCCeEEEEEcCCCCcEEEEec
Q 048012 387 LPNNYAQ-----TNVAFSPDEQLFL-TGTSVERESTTGGLLCFYDREKLELVSRVGISPACSVVQCAWHPKLNQIFATAG 460 (616)
Q Consensus 387 ~~~~~~v-----~~v~fspdg~~l~-~gs~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~ 460 (616)
.+...+ ..++|+|||+.|+ ..+. ......|++||+.+++... +.. ....|..+.+ ++++.|+..+.
T Consensus 311 -~~~~~v~~~~~~~p~fspDG~~l~~~~s~----~~G~~~l~~~~~~~~~~~~-lT~-g~~~v~~~~~-~d~~~i~f~~~ 382 (740)
T 4a5s_A 311 -STTGWVGRFRPSEPHFTLDGNSFYKIISN----EEGYRHICYFQIDKKDCTF-ITK-GTWEVIGIEA-LTSDYLYYISN 382 (740)
T ss_dssp -CSSSCSSSSSCCCCEECTTSSEEEEEEEC----TTSCEEEEEEETTCSSCEE-SCC-SSSCEEEEEE-ECSSEEEEEES
T ss_pred -cCCceEccCcCCCceEcCCCCEEEEEEEc----CCCceEEEEEECCCCceEe-ccc-CCEEEEEEEE-EeCCEEEEEEe
Confidence 122223 3789999999887 5552 0123679999998776543 322 2344555442 33566665554
No 161
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.80 E-value=1e-18 Score=190.98 Aligned_cols=255 Identities=15% Similarity=0.116 Sum_probs=173.6
Q ss_pred CCceEEEEecCCCCeEEEEeC-CCeEEEEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeC---
Q 048012 196 GHQVRNLSWSPTSDRFLCVTG-SAQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSE--- 271 (616)
Q Consensus 196 ~~~v~~l~~sp~g~~l~~~s~-d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~--- 271 (616)
..+|++++|+|||++|++++. ++.++||+++++....+ +..+...+..+.|+|+ .++++++.
T Consensus 21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~l------------t~~~~~~~~~~~~spd--~~l~~~~~~~g 86 (582)
T 3o4h_A 21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETVKL------------NREPINSVLDPHYGVG--RVILVRDVSKG 86 (582)
T ss_dssp HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEEEC------------CSSCCSEECEECTTCS--EEEEEEECSTT
T ss_pred ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcEee------------ecccccccccccCCCC--eEEEEeccCCC
Confidence 456999999999999999887 99999999876654221 2333468999999997 57777775
Q ss_pred CCCEEEEECCC--ccccceEEeeeccCCCCccEEEEEECCCCCe-EEEEeCCCcEEEEeCCCCCCCCCceeeecCCCCCe
Q 048012 272 DGSLRIWDVNE--FKSQKQVIKPKLARPGRVAVTTCAWDCDGKC-IAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHSDDI 348 (616)
Q Consensus 272 Dg~v~iwd~~~--~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~-l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V 348 (616)
+...+||.+.. ......+ .. .. .+...+|+|+|+. +++...++.+.|||+.++ ...... .+..
T Consensus 87 ~~~~~l~~~~~~~~g~~~~l---~~--~~--~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g----~~~~l~-~~~~-- 152 (582)
T 3o4h_A 87 AEQHALFKVNTSRPGEEQRL---EA--VK--PMRILSGVDTGEAVVFTGATEDRVALYALDGG----GLRELA-RLPG-- 152 (582)
T ss_dssp SCCEEEEEEETTSTTCCEEC---TT--SC--SBEEEEEEECSSCEEEEEECSSCEEEEEEETT----EEEEEE-EESS--
T ss_pred CcceEEEEEeccCCCccccc---cC--CC--CceeeeeCCCCCeEEEEecCCCCceEEEccCC----cEEEee-cCCC--
Confidence 55567766543 2221111 11 11 2335577777753 334444555669999876 222222 2323
Q ss_pred EEEEEcCCCCeEEEEecC----CcEEEEeCCCCCCcceEecCCCCCCcceeEEECCCCCEEEEeeccccccCCCc--eEE
Q 048012 349 TALKFSSDGRILLSRSFD----GSLKVWDLRKMKEPLKVFEDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGG--LLC 422 (616)
Q Consensus 349 ~~l~~spdg~~l~s~s~D----g~v~lwd~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg--~i~ 422 (616)
.+++|+|||++|++++.+ +.|++||+.++. ...+.. +...+..++|||||++|+++. .++ .|+
T Consensus 153 ~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~--~~~l~~--~~~~~~~~~~SpDG~~l~~~~-------~~~~~~i~ 221 (582)
T 3o4h_A 153 FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGG--LRVFDS--GEGSFSSASISPGMKVTAGLE-------TAREARLV 221 (582)
T ss_dssp CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCC--CEEECC--SSCEEEEEEECTTSCEEEEEE-------CSSCEEEE
T ss_pred ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCC--ceEeec--CCCccccceECCCCCEEEEcc-------CCCeeEEE
Confidence 899999999999988877 789999998654 234433 334589999999999999666 677 899
Q ss_pred EEeCCCCceEEEEecCCCCCeEEEE--------EcCCCCcEEEEeccCCCCceEEEec--------------ccCCCCCc
Q 048012 423 FYDREKLELVSRVGISPACSVVQCA--------WHPKLNQIFATAGDKSQGGTHILYD--------------PRLSERGA 480 (616)
Q Consensus 423 iwd~~~~~~~~~~~~~~~~~v~~~~--------~~p~~~~l~~~~~d~~~~~~~~v~~--------------~~~s~~g~ 480 (616)
+||+.+++.. .+. .+...+..++ |+|++..++++.. ++...+|. ++|+ +|+
T Consensus 222 ~~d~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~----~g~~~l~~~g~~~~~~~~~v~~~~~s-dg~ 294 (582)
T 3o4h_A 222 TVDPRDGSVE-DLE-LPSKDFSSYRPTAITWLGYLPDGRLAVVARR----EGRSAVFIDGERVEAPQGNHGRVVLW-RGK 294 (582)
T ss_dssp EECTTTCCEE-ECC-CSCSHHHHHCCSEEEEEEECTTSCEEEEEEE----TTEEEEEETTEEECCCSSEEEEEEEE-TTE
T ss_pred EEcCCCCcEE-Ecc-CCCcChhhhhhccccceeEcCCCcEEEEEEc----CCcEEEEEECCeeccCCCceEEEEec-CCE
Confidence 9999998877 433 3445566666 9999955555554 55666664 5677 888
Q ss_pred EEEEecCCcc---eecccc
Q 048012 481 LVCVARAPRK---KSVDDF 496 (616)
Q Consensus 481 ~l~s~~~d~~---~~~wd~ 496 (616)
++++++.+.. +.+|+.
T Consensus 295 ~l~~~s~~~~p~~l~~~d~ 313 (582)
T 3o4h_A 295 LVTSHTSLSTPPRIVSLPS 313 (582)
T ss_dssp EEEEEEETTEEEEEEEETT
T ss_pred EEEEEcCCCCCCeEEEEcC
Confidence 8888776633 444544
No 162
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.79 E-value=6.2e-18 Score=189.68 Aligned_cols=301 Identities=13% Similarity=0.059 Sum_probs=189.2
Q ss_pred cEEEEEECCCCCEEEEEEc---------CCcEEEEeCCCCccccccceecCCCCCCceEEEEecCCCCeEEEEeCCCeEE
Q 048012 151 IVSALAVDHSGSRVLSGSY---------DYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSDRFLCVTGSAQAK 221 (616)
Q Consensus 151 ~V~~v~~sp~g~~lasgs~---------Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~s~d~~v~ 221 (616)
.|.+++|||||++||+++. ++.|++||+.++.... ...+ ...+..++|||+|++|+++. ++.|+
T Consensus 61 ~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~--~~~l----~~~~~~~~~SPDG~~la~~~-~~~i~ 133 (719)
T 1z68_A 61 NASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVR--GNEL----PRPIQYLCWSPVGSKLAYVY-QNNIY 133 (719)
T ss_dssp TCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECC--SSCC----CSSBCCEEECSSTTCEEEEE-TTEEE
T ss_pred ceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCcccc--ceec----CcccccceECCCCCEEEEEE-CCeEE
Confidence 3899999999999999876 7899999998753200 0111 13588899999999999875 78999
Q ss_pred EEECCCCeeeeEeeCceeEeecccCCCcccc---------eEEEEEcCCCCCEEEEEeCCC-------------------
Q 048012 222 IYDRDGLTLGEFVKGDMYIRDLKNTKGHICG---------LTCGEWHPKTKETILTSSEDG------------------- 273 (616)
Q Consensus 222 vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~---------v~~~~~~p~~~~~l~s~s~Dg------------------- 273 (616)
+|++.++....+..... ....+.+|... ..++.|+|+++ .|++++.|.
T Consensus 134 ~~~~~~g~~~~l~~~~~---~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~-~la~~~~d~~~~~~~~~~~~~~~~~~~~ 209 (719)
T 1z68_A 134 LKQRPGDPPFQITFNGR---ENKIFNGIPDWVYEEEMLATKYALWWSPNGK-FLAYAEFNDTDIPVIAYSYYGDEQYPRT 209 (719)
T ss_dssp EESSTTSCCEECCCCCB---TTTEEESSCCHHHHHHTTCSSCCEEECTTSS-EEEEEEEECTTSCEEEEEECCSSSSCEE
T ss_pred EEeCCCCCcEEEecCCC---cCCeEcccccceeeeecccCcccEEECCCCC-EEEEEEECCCCCceEEeeccCCCCCccc
Confidence 99998765432210000 00001122222 25899999985 777776542
Q ss_pred ---------------CEEEEECCCcccc--ceEEeeeccCCCCccEEEEEECCCCCeEEEEeCCC----cEEEEe----C
Q 048012 274 ---------------SLRIWDVNEFKSQ--KQVIKPKLARPGRVAVTTCAWDCDGKCIAGGIGDG----SIQVWN----L 328 (616)
Q Consensus 274 ---------------~v~iwd~~~~~~~--~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~g~~dg----~I~iwd----~ 328 (616)
.|++||+.++... ..+..+.....+...+.+++|+|+++++++....+ .|++|| +
T Consensus 210 ~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~ 289 (719)
T 1z68_A 210 INIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDW 289 (719)
T ss_dssp EEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSS
T ss_pred eeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCC
Confidence 7889999876542 11111111123455789999999988777754332 488999 7
Q ss_pred CCCCCCCCceeee----cCCCCCeE-----EEEEcCCCCeEEE--EecCC--cEEEEeCCCCCCcceEecCCCCCCccee
Q 048012 329 KPGWGSRPDIHVE----KGHSDDIT-----ALKFSSDGRILLS--RSFDG--SLKVWDLRKMKEPLKVFEDLPNNYAQTN 395 (616)
Q Consensus 329 ~~~~~~~~~~~~~----~~h~~~V~-----~l~~spdg~~l~s--~s~Dg--~v~lwd~~~~~~~~~~~~~~~~~~~v~~ 395 (616)
.++ .....+ ..|...|. .++|+|||+.|+. ...+| .|.+||+.... ...+.. ....+..
T Consensus 290 ~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~--~~~lt~--~~~~v~~ 361 (719)
T 1z68_A 290 QTW----DCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVEN--AIQITS--GKWEAIN 361 (719)
T ss_dssp SSE----ECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTT--CEECSC--SSSCEEE
T ss_pred CCC----ceEEEEecccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCc--eEeccc--CceEEEE
Confidence 665 223333 46777776 8999999996654 43555 47777776533 333332 2334677
Q ss_pred EEECCCCCEEEEeeccccccCCCceEEEEeCCC--Cc-eEEEEecC---CCCCeEEEEEcCCCCcEEEEeccCCCCceEE
Q 048012 396 VAFSPDEQLFLTGTSVERESTTGGLLCFYDREK--LE-LVSRVGIS---PACSVVQCAWHPKLNQIFATAGDKSQGGTHI 469 (616)
Q Consensus 396 v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~--~~-~~~~~~~~---~~~~v~~~~~~p~~~~l~~~~~d~~~~~~~~ 469 (616)
+.++ +++.|+..+... ...++.++||.+.. +. ....+... +...+..+.|+|+++.|+..+.... ...+.
T Consensus 362 ~~~~-d~~~i~~~~~~~--~~~~~~~~l~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~s~dg~~l~~~~s~~~-~p~~~ 437 (719)
T 1z68_A 362 IFRV-TQDSLFYSSNEF--EEYPGRRNIYRISIGSYPPSKKCVTCHLRKERCQYYTASFSDYAKYYALVCYGPG-IPIST 437 (719)
T ss_dssp EEEE-CSSEEEEEESCG--GGCTTCBEEEEEECSSSSCCEEESSTTTTTTTBCBEEEEECGGGSSEEEEECCBS-SCEEE
T ss_pred EEEE-eCCEEEEEEecC--CCCCceEEEEEEeCCCCCCCceeccCccCCCCCceEEEEECCCCCEEEEEcCCCC-CCeEE
Confidence 7777 888887776200 00146777887653 42 12333211 3356788999999999887665321 13566
Q ss_pred Eeccc
Q 048012 470 LYDPR 474 (616)
Q Consensus 470 v~~~~ 474 (616)
+|++.
T Consensus 438 l~d~~ 442 (719)
T 1z68_A 438 LHDGR 442 (719)
T ss_dssp EECSS
T ss_pred EEECC
Confidence 77654
No 163
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.78 E-value=1e-17 Score=169.92 Aligned_cols=242 Identities=12% Similarity=0.099 Sum_probs=166.8
Q ss_pred EEEecCCCCeEEEEeCCCeEEEEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEEEEC
Q 048012 201 NLSWSPTSDRFLCVTGSAQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDV 280 (616)
Q Consensus 201 ~l~~sp~g~~l~~~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~ 280 (616)
.+++++++.++++++.++.|++||..+.++..... .+....+..++|+|++..+++++..++.|.+||+
T Consensus 4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~-----------~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~ 72 (349)
T 1jmx_B 4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCV-----------MPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDL 72 (349)
T ss_dssp CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEE-----------CSSCCSSCEEEECTTSSEEEEEETTTTEEEEEET
T ss_pred cccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEe-----------cCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeC
Confidence 35678888889999999999999998776532211 1111246789999998656667778899999999
Q ss_pred CCccccceEEeeeccCCCCccEEEEEECCCCCeEEEEeCC------------CcEEEEeCCCCCCCCCceeeecCCCCCe
Q 048012 281 NEFKSQKQVIKPKLARPGRVAVTTCAWDCDGKCIAGGIGD------------GSIQVWNLKPGWGSRPDIHVEKGHSDDI 348 (616)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~g~~d------------g~I~iwd~~~~~~~~~~~~~~~~h~~~V 348 (616)
.+++....+............+.+++|+|+|++|++++.+ +.|.+||+.++. ....+.... +...+
T Consensus 73 ~t~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~-~~~~~~~~~-~~~~~ 150 (349)
T 1jmx_B 73 DTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGL-EAKPVRTFP-MPRQV 150 (349)
T ss_dssp TTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGG-GBCCSEEEE-CCSSC
T ss_pred CCCcEEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCcc-ccceeeecc-CCCcc
Confidence 8766544332211000001136788999999999998865 899999998642 112223333 33468
Q ss_pred EEEEEcCCCCeEEEEecCCcEEEEeCCCCCCcceEecCCC----------------------------------------
Q 048012 349 TALKFSSDGRILLSRSFDGSLKVWDLRKMKEPLKVFEDLP---------------------------------------- 388 (616)
Q Consensus 349 ~~l~~spdg~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~---------------------------------------- 388 (616)
.+++|+|+|+ |++++ +.|++||+.++.. +..+....
T Consensus 151 ~~~~~s~dg~-l~~~~--~~i~~~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 226 (349)
T 1jmx_B 151 YLMRAADDGS-LYVAG--PDIYKMDVKTGKY-TVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDP 226 (349)
T ss_dssp CCEEECTTSC-EEEES--SSEEEECTTTCCE-EEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------
T ss_pred cceeECCCCc-EEEcc--CcEEEEeCCCCce-eccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCc
Confidence 9999999999 55554 3499999986542 22222110
Q ss_pred --------------------------CCCcceeEEECC-CCCEEEEeeccccccCCCceEEEEeCCCCceEEEEecCCCC
Q 048012 389 --------------------------NNYAQTNVAFSP-DEQLFLTGTSVERESTTGGLLCFYDREKLELVSRVGISPAC 441 (616)
Q Consensus 389 --------------------------~~~~v~~v~fsp-dg~~l~~gs~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 441 (616)
....+..++|+| ++++|+++ ++.|++||+.+++.+..+... .
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~---------~~~v~~~d~~~~~~~~~~~~~--~ 295 (349)
T 1jmx_B 227 ATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV---------LNRLAKYDLKQRKLIKAANLD--H 295 (349)
T ss_dssp CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE---------ESEEEEEETTTTEEEEEEECS--S
T ss_pred cccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE---------cCeEEEEECccCeEEEEEcCC--C
Confidence 001245677889 99988887 368999999999988887643 3
Q ss_pred CeEEEEEcCCCCcEEEEeccCCCCceEEEeccc
Q 048012 442 SVVQCAWHPKLNQIFATAGDKSQGGTHILYDPR 474 (616)
Q Consensus 442 ~v~~~~~~p~~~~l~~~~~d~~~~~~~~v~~~~ 474 (616)
.+..++|+|++++|++++. ++.+.+|++.
T Consensus 296 ~~~~~~~s~dg~~l~~~~~----~~~v~v~d~~ 324 (349)
T 1jmx_B 296 TYYCVAFDKKGDKLYLGGT----FNDLAVFNPD 324 (349)
T ss_dssp CCCEEEECSSSSCEEEESB----SSEEEEEETT
T ss_pred CccceEECCCCCEEEEecC----CCeEEEEecc
Confidence 4778999999988888654 6788888875
No 164
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.78 E-value=2e-17 Score=169.59 Aligned_cols=258 Identities=11% Similarity=0.086 Sum_probs=164.9
Q ss_pred CcccEEEEEECCCCCEEEEEEcCCcEEEEeCC-CCccccccceecCCCCCCceEEEEecCCCCe--EEEEe---------
Q 048012 148 HTKIVSALAVDHSGSRVLSGSYDYTVRMYDFQ-GMNSRLQSFRQLEPSEGHQVRNLSWSPTSDR--FLCVT--------- 215 (616)
Q Consensus 148 H~~~V~~v~~sp~g~~lasgs~Dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~--l~~~s--------- 215 (616)
+...+..++|+|+|++|++++.+ .|.+|++. ++. . ...... ...+ .+.+++|+|+|++ ++++.
T Consensus 38 ~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~-~-~~~~~~-~~~g-~~~~~~~spdg~~l~~~~~~~~~~~~~~~ 112 (365)
T 1jof_A 38 QDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTE-I-VHEASH-PIGG-HPRANDADTNTRAIFLLAAKQPPYAVYAN 112 (365)
T ss_dssp TTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTE-E-EEEEEE-ECCS-SGGGGCTTSCCEEEEEEECSSTTCCEEEE
T ss_pred CCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCC-E-EEeeEe-ecCC-CCccEEECCCCCEEEEEEecCCcceeccc
Confidence 34467889999999999999988 99999986 432 1 111111 1112 2556899999995 33442
Q ss_pred ----CCCeEEEEECCC-CeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEe-CCCCEEEEECC-Cccccce
Q 048012 216 ----GSAQAKIYDRDG-LTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSS-EDGSLRIWDVN-EFKSQKQ 288 (616)
Q Consensus 216 ----~d~~v~vwd~~~-~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s-~Dg~v~iwd~~-~~~~~~~ 288 (616)
.++.+.+|+++. +.+..... .+ ...+...+.+++|+|+++ +|+++. .++.|++||+. +++.. .
T Consensus 113 ~~~~~~g~v~v~~~~~~g~~~~~~~------~~--~~~~~~~~~~~~~spdG~-~l~~~~~~~~~v~~~~~~~~g~~~-~ 182 (365)
T 1jof_A 113 PFYKFAGYGNVFSVSETGKLEKNVQ------NY--EYQENTGIHGMVFDPTET-YLYSADLTANKLWTHRKLASGEVE-L 182 (365)
T ss_dssp EESSSCCEEEEEEECTTCCEEEEEE------EE--ECCTTCCEEEEEECTTSS-EEEEEETTTTEEEEEEECTTSCEE-E
T ss_pred eeecCCceEEEEccCCCCcCcceEe------eE--EeCCCCcceEEEECCCCC-EEEEEcCCCCEEEEEEECCCCCEE-E
Confidence 588999999863 33321100 00 012456789999999985 555554 46899999997 44321 1
Q ss_pred EEeeeccCCCCccEEEEEECCCCCeEEEEeC-CCcEEEEeCCCCCCCCC----ceeeec----CCCC------CeEEEE-
Q 048012 289 VIKPKLARPGRVAVTTCAWDCDGKCIAGGIG-DGSIQVWNLKPGWGSRP----DIHVEK----GHSD------DITALK- 352 (616)
Q Consensus 289 ~~~~~~~~~~~~~v~~~~~sp~g~~l~~g~~-dg~I~iwd~~~~~~~~~----~~~~~~----~h~~------~V~~l~- 352 (616)
+.... ...+...+..++|+|+|++|++++. ++.|.+|++........ .+..+. +|.. .+..++
T Consensus 183 ~~~~~-~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~ 261 (365)
T 1jof_A 183 VGSVD-APDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCA 261 (365)
T ss_dssp EEEEE-CSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEE
T ss_pred eeeEe-cCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEE
Confidence 11111 0111235889999999999888775 68999998753110110 111221 2232 588999
Q ss_pred EcCCCCeEEEEecC-C-----cEEEEeCCCCCCcceE---ecCCCCCCcceeEEECC---CCCEEEEeeccccccCCCce
Q 048012 353 FSSDGRILLSRSFD-G-----SLKVWDLRKMKEPLKV---FEDLPNNYAQTNVAFSP---DEQLFLTGTSVERESTTGGL 420 (616)
Q Consensus 353 ~spdg~~l~s~s~D-g-----~v~lwd~~~~~~~~~~---~~~~~~~~~v~~v~fsp---dg~~l~~gs~~~~~~~~dg~ 420 (616)
|+|||++|+++..+ + +|.+|++...+..... ... ....+..++|+| ||++|++++. .++.
T Consensus 262 ~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~--~~~~~~~~a~sp~~~dg~~l~v~~~------~~~~ 333 (365)
T 1jof_A 262 LTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPT--PTSGGHSNAVSPCPWSDEWMAITDD------QEGW 333 (365)
T ss_dssp ECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEEC--SSCCTTCCCEEECTTCTTEEEEECS------SSCE
T ss_pred ECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeec--CCCCcccceecCCCcCCCEEEEEEc------CCCe
Confidence 99999988876643 2 8999999632332221 211 223367899999 8999999872 3589
Q ss_pred EEEEeCCCC
Q 048012 421 LCFYDREKL 429 (616)
Q Consensus 421 i~iwd~~~~ 429 (616)
|.||++...
T Consensus 334 v~v~~~~~~ 342 (365)
T 1jof_A 334 LEIYRWKDE 342 (365)
T ss_dssp EEEEEEETT
T ss_pred EEEEEEchh
Confidence 999998655
No 165
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.76 E-value=1.3e-17 Score=172.49 Aligned_cols=297 Identities=11% Similarity=0.066 Sum_probs=176.8
Q ss_pred cEEEEEECCCCCEEEEEEcC---CcEEEEeCCCCccccccceecCCCCCCceEEEEecCCCCeEEEEeCCCeEEEEECCC
Q 048012 151 IVSALAVDHSGSRVLSGSYD---YTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSDRFLCVTGSAQAKIYDRDG 227 (616)
Q Consensus 151 ~V~~v~~sp~g~~lasgs~D---g~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~s~d~~v~vwd~~~ 227 (616)
.+.+++|+|+|++|+..... ..|.+|++.++. ...+..........+.|+|+|++|+.++.++.|++|++.+
T Consensus 37 ~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~-----~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~ 111 (396)
T 3c5m_A 37 YFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQ-----AVQLTEGKGDNTFGGFISTDERAFFYVKNELNLMKVDLET 111 (396)
T ss_dssp CTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTE-----EEECCCSSCBCTTTCEECTTSSEEEEEETTTEEEEEETTT
T ss_pred eeecCcCCCCCCEEEEEEecCCCceEEEEECCCCc-----EEEeecCCCCccccceECCCCCEEEEEEcCCcEEEEECCC
Confidence 36778999999998877653 368888887643 1222222222233478999999999999999999999987
Q ss_pred CeeeeEeeCc-eeEee---cccCCCc-cc--ceEEEEEcCCCCCEEEEE-----eCCCCEEEEECCCccccceEEeeecc
Q 048012 228 LTLGEFVKGD-MYIRD---LKNTKGH-IC--GLTCGEWHPKTKETILTS-----SEDGSLRIWDVNEFKSQKQVIKPKLA 295 (616)
Q Consensus 228 ~~~~~~~~~~-~~~~~---~~~~~~h-~~--~v~~~~~~p~~~~~l~s~-----s~Dg~v~iwd~~~~~~~~~~~~~~~~ 295 (616)
.....+.... .+..+ +...... .. ....+.|+|++. .++.+ ..+..|++||+.+++... +. .
T Consensus 112 ~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~-~~~~~~~~~~~~~~~l~~~d~~~g~~~~-~~-~--- 185 (396)
T 3c5m_A 112 LEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTS-WEKFAEFYHTNPTCRLIKVDIETGELEV-IH-Q--- 185 (396)
T ss_dssp CCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCS-HHHHHHHHHTCCCEEEEEEETTTCCEEE-EE-E---
T ss_pred CCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCc-ceeeeeeccCCCcceEEEEECCCCcEEe-ec-c---
Confidence 7654332210 00000 0000000 00 000034677664 33332 456789999998755322 22 1
Q ss_pred CCCCccEEEEEECC-CCCeEEEEeCC------CcEEEEeCCCCCCCCCceeeecCC--CCCeEEEEEcCCCCeEEEEecC
Q 048012 296 RPGRVAVTTCAWDC-DGKCIAGGIGD------GSIQVWNLKPGWGSRPDIHVEKGH--SDDITALKFSSDGRILLSRSFD 366 (616)
Q Consensus 296 ~~~~~~v~~~~~sp-~g~~l~~g~~d------g~I~iwd~~~~~~~~~~~~~~~~h--~~~V~~l~~spdg~~l~s~s~D 366 (616)
+...+..+.|+| +++.|+..+.+ ..|.+||+..+ ... .+..+ ...+..++|+|||++|+..+.+
T Consensus 186 --~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~----~~~-~l~~~~~~~~~~~~~~spdg~~l~~~~~~ 258 (396)
T 3c5m_A 186 --DTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGS----NVR-KIKEHAEGESCTHEFWIPDGSAMAYVSYF 258 (396)
T ss_dssp --ESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSC----CCE-ESSCCCTTEEEEEEEECTTSSCEEEEEEE
T ss_pred --CCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCC----cee-EeeccCCCccccceEECCCCCEEEEEecC
Confidence 122578999999 78877766543 36888998754 222 22223 2358889999999988877654
Q ss_pred -----CcEEEEeCCCCCCcceEecCCCCCCcceeEEECC-CCCEEEEeeccc---------cccCCCceEEEEeCCCCce
Q 048012 367 -----GSLKVWDLRKMKEPLKVFEDLPNNYAQTNVAFSP-DEQLFLTGTSVE---------RESTTGGLLCFYDREKLEL 431 (616)
Q Consensus 367 -----g~v~lwd~~~~~~~~~~~~~~~~~~~v~~v~fsp-dg~~l~~gs~~~---------~~~~~dg~i~iwd~~~~~~ 431 (616)
+.|++||+.++.. . .+..... .. +.|+| ||++|++++... .....+..|++||+.+++.
T Consensus 259 ~~~~~~~l~~~d~~~g~~-~-~l~~~~~---~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~ 332 (396)
T 3c5m_A 259 KGQTDRVIYKANPETLEN-E-EVMVMPP---CS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSA 332 (396)
T ss_dssp TTTCCEEEEEECTTTCCE-E-EEEECCS---EE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBC
T ss_pred CCCccceEEEEECCCCCe-E-EeeeCCC---CC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCce
Confidence 4499999986432 2 2222221 23 89999 999888754210 0001347899999988875
Q ss_pred EEEEecCCCC----------CeEEEEEcCCCCcEEEEeccCCCCceEEEecccC
Q 048012 432 VSRVGISPAC----------SVVQCAWHPKLNQIFATAGDKSQGGTHILYDPRL 475 (616)
Q Consensus 432 ~~~~~~~~~~----------~v~~~~~~p~~~~l~~~~~d~~~~~~~~v~~~~~ 475 (616)
.. +...... .+..+.|+|+++.|+.++.. ++...||.+..
T Consensus 333 ~~-l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~---~~~~~l~~~~~ 382 (396)
T 3c5m_A 333 QK-LCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDF---EGVPAIYIADV 382 (396)
T ss_dssp CE-EEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECT---TSSCEEEEEEC
T ss_pred EE-ccCCCCccccccccccCCCCCceEccCCCeEEEEecC---CCCceEEEEEE
Confidence 43 3221111 24556788888877776653 33344554443
No 166
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.75 E-value=1.3e-15 Score=150.34 Aligned_cols=248 Identities=14% Similarity=0.153 Sum_probs=173.0
Q ss_pred CCcccEEEEEECCCCCEEEEEEcCCcEEEEeCCCCccccccceecC--CCCCCceEEEEec-CCCCeEEEEeC-CCeEEE
Q 048012 147 GHTKIVSALAVDHSGSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLE--PSEGHQVRNLSWS-PTSDRFLCVTG-SAQAKI 222 (616)
Q Consensus 147 ~H~~~V~~v~~sp~g~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~--~~~~~~v~~l~~s-p~g~~l~~~s~-d~~v~v 222 (616)
+|-..+.+|+++++|.++++...++.|++||..+. ....+.... ..+...+..++++ +++..+++... ++.|.+
T Consensus 27 g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~g~--~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~ 104 (286)
T 1q7f_A 27 GQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKEGR--FKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQI 104 (286)
T ss_dssp TCBSCEEEEEECTTCCEEEEEGGGTEEEEECTTSC--EEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEE
T ss_pred CccCCCceEEECCCCCEEEEECCCCEEEEECCCCc--EEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEE
Confidence 55678999999999999998888999999997642 111111100 1223468999994 66665555433 889999
Q ss_pred EECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEEEECCCccccceEEeeeccCCCCccE
Q 048012 223 YDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPGRVAV 302 (616)
Q Consensus 223 wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v 302 (616)
|+.++..+..+ ...+...+.++++.+++ +++++...++.|++||... +....+. ...+...+
T Consensus 105 ~d~~g~~~~~~------------~~~~~~~~~~i~~~~~g-~l~v~~~~~~~i~~~~~~g-~~~~~~~----~~~~~~~p 166 (286)
T 1q7f_A 105 YNQYGQFVRKF------------GATILQHPRGVTVDNKG-RIIVVECKVMRVIIFDQNG-NVLHKFG----CSKHLEFP 166 (286)
T ss_dssp ECTTSCEEEEE------------CTTTCSCEEEEEECTTS-CEEEEETTTTEEEEECTTS-CEEEEEE----CTTTCSSE
T ss_pred ECCCCcEEEEe------------cCccCCCceEEEEeCCC-CEEEEECCCCEEEEEcCCC-CEEEEeC----CCCccCCc
Confidence 99665543222 12344568899999987 5888877889999999643 2222221 11222358
Q ss_pred EEEEECCCCCeEEEEeCCCcEEEEeCCCCCCCCCceeeecC--CCCCeEEEEEcCCCCeEEEEecCC-cEEEEeCCCCCC
Q 048012 303 TTCAWDCDGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKG--HSDDITALKFSSDGRILLSRSFDG-SLKVWDLRKMKE 379 (616)
Q Consensus 303 ~~~~~sp~g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~--h~~~V~~l~~spdg~~l~s~s~Dg-~v~lwd~~~~~~ 379 (616)
..++++++|+++++...++.|++||... ..+..+.. +...+..|+++++|+++++...++ .|.+||.. + .
T Consensus 167 ~~i~~~~~g~l~v~~~~~~~i~~~~~~g-----~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~-g-~ 239 (286)
T 1q7f_A 167 NGVVVNDKQEIFISDNRAHCVKVFNYEG-----QYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQD-G-Q 239 (286)
T ss_dssp EEEEECSSSEEEEEEGGGTEEEEEETTC-----CEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTT-S-C
T ss_pred EEEEECCCCCEEEEECCCCEEEEEcCCC-----CEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECCC-C-C
Confidence 9999999999888888899999999754 23444433 336789999999999988888776 99999964 2 3
Q ss_pred cceEecCCCCCCcceeEEECCCCCEEEEeeccccccCCCceEEEEeCCCC
Q 048012 380 PLKVFEDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREKL 429 (616)
Q Consensus 380 ~~~~~~~~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~~ 429 (616)
.+..+........+..++|+|+|+++++ + .++.|++|+....
T Consensus 240 ~~~~~~~~~~~~~~~~i~~~~~g~l~vs-~-------~~~~v~v~~~~~~ 281 (286)
T 1q7f_A 240 LISALESKVKHAQCFDVALMDDGSVVLA-S-------KDYRLYIYRYVQL 281 (286)
T ss_dssp EEEEEEESSCCSCEEEEEEETTTEEEEE-E-------TTTEEEEEECSCC
T ss_pred EEEEEcccCCCCcceeEEECCCCcEEEE-C-------CCCeEEEEEcccc
Confidence 3444443333334778999999987776 5 6899999997654
No 167
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.74 E-value=3.7e-16 Score=157.79 Aligned_cols=274 Identities=11% Similarity=0.108 Sum_probs=186.9
Q ss_pred ccEEEEEECCCCCEEEEEEcCCcEEEEeCCCCccccccceecCCCCCCceEEEEecCCCCeEEEEeCCCeEEEEECCCCe
Q 048012 150 KIVSALAVDHSGSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSDRFLCVTGSAQAKIYDRDGLT 229 (616)
Q Consensus 150 ~~V~~v~~sp~g~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~s~d~~v~vwd~~~~~ 229 (616)
..|.+++|++++..++..+.++.+++|.-. .+..+. .+...+.+++|+++|+.++++..++.|.+||..+..
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~-~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~ 77 (333)
T 2dg1_A 6 QDLPTLFYSGKSNSAVPIISESELQTITAE-------PWLEIS-KKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKE 77 (333)
T ss_dssp CCCCBCCSCGGGGCSSCCCCGGGSCEEECE-------EEEEEE-SSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCC
T ss_pred cccceeeecCCccceeEEeecccCcccccc-------eeEEEe-ccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCc
Confidence 457788899988888877888999999321 122221 233457899999999977778888999999998776
Q ss_pred eeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCC----CCEEEEECCCccccceEEeeeccCCCCccEEEE
Q 048012 230 LGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSED----GSLRIWDVNEFKSQKQVIKPKLARPGRVAVTTC 305 (616)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~D----g~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~ 305 (616)
+..+. ..+...+.+++|++++ .++++...+ +.|.+||..+..... +... ......+.++
T Consensus 78 ~~~~~------------~~~~~~~~~i~~~~dg-~l~v~~~~~~~~~~~i~~~d~~~~~~~~-~~~~---~~~~~~~~~i 140 (333)
T 2dg1_A 78 IKRPF------------VSHKANPAAIKIHKDG-RLFVCYLGDFKSTGGIFAATENGDNLQD-IIED---LSTAYCIDDM 140 (333)
T ss_dssp EEEEE------------ECSSSSEEEEEECTTS-CEEEEECTTSSSCCEEEEECTTSCSCEE-EECS---SSSCCCEEEE
T ss_pred EEEEe------------eCCCCCcceEEECCCC-cEEEEeCCCCCCCceEEEEeCCCCEEEE-EEcc---CccCCcccce
Confidence 53321 1244678999999987 577776666 689999987654321 2111 1122368999
Q ss_pred EECCCCCeEEEEeC------CCcEEEEeCCCCCCCCCceeeecCCCCCeEEEEEcCCCCeEE-EEecCCcEEEEeCCCCC
Q 048012 306 AWDCDGKCIAGGIG------DGSIQVWNLKPGWGSRPDIHVEKGHSDDITALKFSSDGRILL-SRSFDGSLKVWDLRKMK 378 (616)
Q Consensus 306 ~~sp~g~~l~~g~~------dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~-s~s~Dg~v~lwd~~~~~ 378 (616)
+++++|+++++... .+.|..||..++ .+..+..+...+..++|+|+|++|+ +.+.++.|.+||+....
T Consensus 141 ~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~-----~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g 215 (333)
T 2dg1_A 141 VFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFR-----TVTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDG 215 (333)
T ss_dssp EECTTSCEEEEECCCBTTBCCEEEEEECTTSC-----CEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTS
T ss_pred EECCCCCEEEEeccccccCCCceEEEEeCCCC-----EEEEeecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCC
Confidence 99999988777654 356777776543 2222223334588999999998665 44567899999996432
Q ss_pred CcceE-----ecCCCCCCcceeEEECCCCCEEEEeeccccccCCCceEEEEeCCCCceEEEEecCCC-----CCeEEEEE
Q 048012 379 EPLKV-----FEDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREKLELVSRVGISPA-----CSVVQCAW 448 (616)
Q Consensus 379 ~~~~~-----~~~~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~-----~~v~~~~~ 448 (616)
..+.. .........+..++++++|+++++.. .++.|.+||. +++.+..+..... ..+..++|
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~-------~~~~v~~~d~-~g~~~~~~~~~~~~~g~~~~~~~~~~ 287 (333)
T 2dg1_A 216 VTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMY-------GQGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQF 287 (333)
T ss_dssp SSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEE-------TTTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEE
T ss_pred cCcccccceEEEecCCCCCCCceEECCCCCEEEEEc-------CCCEEEEECC-CCCEEEEEEcCCCccccccCcceEEE
Confidence 22211 11111113478899999999888776 6789999998 5777777754321 15889999
Q ss_pred cCCCCcEEEEecc
Q 048012 449 HPKLNQIFATAGD 461 (616)
Q Consensus 449 ~p~~~~l~~~~~d 461 (616)
+|+++.|++++.+
T Consensus 288 ~~dg~~L~v~~~~ 300 (333)
T 2dg1_A 288 IPGTNQLIICSND 300 (333)
T ss_dssp CTTSCEEEEEEEC
T ss_pred CCCCCEEEEEeCc
Confidence 9998888877763
No 168
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.74 E-value=9.9e-16 Score=154.55 Aligned_cols=259 Identities=12% Similarity=0.060 Sum_probs=175.7
Q ss_pred cccEEEEEECCCCCEEEEEEcC------------------------CcEEEEeCCCCccccccceecCCCCCCceEEEEe
Q 048012 149 TKIVSALAVDHSGSRVLSGSYD------------------------YTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSW 204 (616)
Q Consensus 149 ~~~V~~v~~sp~g~~lasgs~D------------------------g~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~ 204 (616)
-+.|.+|+++++|+++++.+.+ ++|.+||..++.. .......+......+++
T Consensus 23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~----~~~~~~~~~~~p~gia~ 98 (329)
T 3fvz_A 23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEI----LQSSGKNLFYLPHGLSI 98 (329)
T ss_dssp CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCE----EEEECTTTCSSEEEEEE
T ss_pred cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeE----EeccCCCccCCceEEEE
Confidence 4679999999999999988877 4799999875431 12222233346899999
Q ss_pred cCCCCeEEEEeCCCeEEEEECCCC--eeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEe-CCCCEEEEECC
Q 048012 205 SPTSDRFLCVTGSAQAKIYDRDGL--TLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSS-EDGSLRIWDVN 281 (616)
Q Consensus 205 sp~g~~l~~~s~d~~v~vwd~~~~--~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s-~Dg~v~iwd~~ 281 (616)
+++|+.+++...++.|++|+.++. .+..+..... .....++......++++|+++.++++.+ .++.|++||.
T Consensus 99 d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~----~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~- 173 (329)
T 3fvz_A 99 DTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQ----PGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSP- 173 (329)
T ss_dssp CTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTB----CCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEECT-
T ss_pred CCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCC----CCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcC-
Confidence 999998888888899999998876 2222210000 0001345567899999994446888876 6899999994
Q ss_pred CccccceEEeeecc----CCCCccEEEEEECCC-CCeEEEEeCCCcEEEEeCCCCCCCCCceeee--cCCCCCeEEEEEc
Q 048012 282 EFKSQKQVIKPKLA----RPGRVAVTTCAWDCD-GKCIAGGIGDGSIQVWNLKPGWGSRPDIHVE--KGHSDDITALKFS 354 (616)
Q Consensus 282 ~~~~~~~~~~~~~~----~~~~~~v~~~~~sp~-g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~--~~h~~~V~~l~~s 354 (616)
++.....+...... ...-.....++++++ ++++++...++.|++||..++ ..+..+ ..+...+.+++|+
T Consensus 174 ~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G----~~~~~~~~~~~~~~~~~~~~~ 249 (329)
T 3fvz_A 174 SGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTK----EFVREIKHASFGRNVFAISYI 249 (329)
T ss_dssp TSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTC----CEEEEECCTTTTTCEEEEEEE
T ss_pred CCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCC----cEEEEEeccccCCCcceeeec
Confidence 33333322211100 011124789999998 777888888999999999855 344444 3466778999999
Q ss_pred C------CCCeEEEEecCCcEEEEeCCCCCCcceEecC-CCCCCcceeEEECCCCCEEEEeeccccccCCCceEEEEeCC
Q 048012 355 S------DGRILLSRSFDGSLKVWDLRKMKEPLKVFED-LPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDRE 427 (616)
Q Consensus 355 p------dg~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~-~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~ 427 (616)
| +|+.+++...+.+|++||+.++. .+..+.. ..+...+..|+|+|+|.++++.. .++.|++|++.
T Consensus 250 pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~-~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~-------~~~~I~~~~~~ 321 (329)
T 3fvz_A 250 PGFLFAVNGKPYFGDQEPVQGFVMNFSSGE-IIDVFKPVRKHFDMPHDIVASEDGTVYIGDA-------HTNTVWKFTLT 321 (329)
T ss_dssp TTEEEEEECCCCTTCSCCCCEEEEETTTCC-EEEEECCSSSCCSSEEEEEECTTSEEEEEES-------SSCCEEEEEEE
T ss_pred CCEEEEeCCCEEeccCCCcEEEEEEcCCCe-EEEEEcCCCCccCCeeEEEECCCCCEEEEEC-------CCCEEEEEeCC
Confidence 9 33333333445689999998754 3444421 12334588999999997777766 78899999975
Q ss_pred C
Q 048012 428 K 428 (616)
Q Consensus 428 ~ 428 (616)
.
T Consensus 322 ~ 322 (329)
T 3fvz_A 322 E 322 (329)
T ss_dssp E
T ss_pred c
Confidence 3
No 169
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.74 E-value=6.8e-16 Score=159.24 Aligned_cols=245 Identities=10% Similarity=0.049 Sum_probs=155.3
Q ss_pred EEecCCCCeEEEEeC-CC--eEEEEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEEE
Q 048012 202 LSWSPTSDRFLCVTG-SA--QAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIW 278 (616)
Q Consensus 202 l~~sp~g~~l~~~s~-d~--~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iw 278 (616)
.+|+|+|++|++++. ++ .|.+||+.+.....+ +.++...+..+.|+|++. .|+.++.++.|++|
T Consensus 41 ~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~l------------t~~~~~~~~~~~~spdg~-~l~~~~~~~~l~~~ 107 (388)
T 3pe7_A 41 KCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQL------------TEGRGDNTFGGFLSPDDD-ALFYVKDGRNLMRV 107 (388)
T ss_dssp CCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEEC------------CCSSCBCSSSCEECTTSS-EEEEEETTTEEEEE
T ss_pred ccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEe------------eeCCCCCccceEEcCCCC-EEEEEeCCCeEEEE
Confidence 789999999999887 56 488889887765322 345555555678999884 88888888999999
Q ss_pred ECCCccccceEEeeeccCCCCccEEE--EEECCCCCeEEEEe----------------------CCCcEEEEeCCCCCCC
Q 048012 279 DVNEFKSQKQVIKPKLARPGRVAVTT--CAWDCDGKCIAGGI----------------------GDGSIQVWNLKPGWGS 334 (616)
Q Consensus 279 d~~~~~~~~~~~~~~~~~~~~~~v~~--~~~sp~g~~l~~g~----------------------~dg~I~iwd~~~~~~~ 334 (616)
|+.+++....... ... .+.. ..+++++++++... .++.|++||+.++
T Consensus 108 d~~~g~~~~~~~~----~~~--~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g--- 178 (388)
T 3pe7_A 108 DLATLEENVVYQV----PAE--WVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTG--- 178 (388)
T ss_dssp ETTTCCEEEEEEC----CTT--EEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTC---
T ss_pred ECCCCcceeeeec----hhh--cccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCC---
Confidence 9988654332211 111 2322 34589999887532 3467999999876
Q ss_pred CCceeeecCCCCCeEEEEEcC-CCCeEEEEecC------CcEEEEeCCCCCCcceEecCCCCCCcceeEEECCCCCEEEE
Q 048012 335 RPDIHVEKGHSDDITALKFSS-DGRILLSRSFD------GSLKVWDLRKMKEPLKVFEDLPNNYAQTNVAFSPDEQLFLT 407 (616)
Q Consensus 335 ~~~~~~~~~h~~~V~~l~~sp-dg~~l~s~s~D------g~v~lwd~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~ 407 (616)
....+..+...+..++|+| ||+.|+.++.+ ..|.+||+... . ...+........+..++|+|||+.|+.
T Consensus 179 --~~~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~-~-~~~l~~~~~~~~~~~~~~spdg~~l~~ 254 (388)
T 3pe7_A 179 --ESTVILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGT-N-MRKVKTHAEGESCTHEFWVPDGSALVY 254 (388)
T ss_dssp --CEEEEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSC-C-CEESCCCCTTEEEEEEEECTTSSCEEE
T ss_pred --ceEEeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCC-c-eEEeeeCCCCcccccceECCCCCEEEE
Confidence 2344445667799999999 99999887753 36888887643 2 233333222234778899999998876
Q ss_pred eeccccccCCCceEEEEeCCCCceEEEEecCCCCC----eEEEEEcCCCCcEEEEeccC-----CCCceEEEeccc
Q 048012 408 GTSVERESTTGGLLCFYDREKLELVSRVGISPACS----VVQCAWHPKLNQIFATAGDK-----SQGGTHILYDPR 474 (616)
Q Consensus 408 gs~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~----v~~~~~~p~~~~l~~~~~d~-----~~~~~~~v~~~~ 474 (616)
.+... ...+..|++||+.+++............ ...++|+|+++.|+....+. .....+.+|++.
T Consensus 255 ~~~~~--~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~ 328 (388)
T 3pe7_A 255 VSYLK--GSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMK 328 (388)
T ss_dssp EEEET--TCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETT
T ss_pred EecCC--CCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEecc
Confidence 55210 0012359999999987543322211000 11237999999888754320 114456666653
No 170
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.73 E-value=1.2e-15 Score=169.48 Aligned_cols=292 Identities=11% Similarity=0.046 Sum_probs=182.8
Q ss_pred EecCCcccEEEEEECCCCCEEEEE--EcCCcEEEEeCCCCccccccceecCCCCCCceE---------EEEec--CCCCe
Q 048012 144 VLKGHTKIVSALAVDHSGSRVLSG--SYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVR---------NLSWS--PTSDR 210 (616)
Q Consensus 144 ~l~~H~~~V~~v~~sp~g~~lasg--s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~---------~l~~s--p~g~~ 210 (616)
.+.+|...|..++|++++-++++. +.++...||...... . .+.+.. +...+. .+.|+ |||++
T Consensus 18 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~-~---~~~l~~-~~~~~~~~~~~~~~~~~~~~~SPDg~~ 92 (662)
T 3azo_A 18 LVASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADG-A---EESALP-APWNVRNRVFEYSGFPWAGVPRPAGGP 92 (662)
T ss_dssp HHHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTS-C---EEESSC-TTCCBCCCGGGTCCCCEEEECCSSSSC
T ss_pred HHhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCC-C---cceeCC-CCccccccccccCCccceeeeecCCCe
Confidence 466899999999999887677766 558899999863322 1 122221 223333 45555 99998
Q ss_pred -EEEEeC-CCeEEEEECC--C-CeeeeEeeCceeEeecccC--CCcccceEEEEEcCCCCCEEEEEeCC----------C
Q 048012 211 -FLCVTG-SAQAKIYDRD--G-LTLGEFVKGDMYIRDLKNT--KGHICGLTCGEWHPKTKETILTSSED----------G 273 (616)
Q Consensus 211 -l~~~s~-d~~v~vwd~~--~-~~~~~~~~~~~~~~~~~~~--~~h~~~v~~~~~~p~~~~~l~s~s~D----------g 273 (616)
|+.++. +..|.+|++. + ..... +... ..|...+..++|+|+++ .|++++.+ .
T Consensus 93 ~la~~~~~~~~l~~~~~~~~g~~~~~~----------l~~~~~~~~~~~~~~~~~spDg~-~l~~~~~~~~~~~~~~~~~ 161 (662)
T 3azo_A 93 LLVFTHFGDQRLYAFEPDAPGGAVPRP----------LTPVSAVGGGLRWADPVLLPERG-EVWCMAEEFTGEGPSDVRR 161 (662)
T ss_dssp EEEEEBTTTCCEEEECTTSTTCCCCEE----------CSCCCCSTTCEEEEEEEEETTTT-EEEEEEEEECSSSTTCEEE
T ss_pred EEEEEECCCCeEEEEcCCCCCCCCCEe----------ccCCccCCCCccccCcEECCCCC-EEEEEEecccCCCCCCcee
Confidence 776654 5667777766 3 43211 1111 11667889999999985 77777766 5
Q ss_pred CEEEEECCC------ccccceEEeeeccCCCCccEEEEEECCCCCeEEEEeCC--------CcEEEEeCC-CCCCCCCce
Q 048012 274 SLRIWDVNE------FKSQKQVIKPKLARPGRVAVTTCAWDCDGKCIAGGIGD--------GSIQVWNLK-PGWGSRPDI 338 (616)
Q Consensus 274 ~v~iwd~~~------~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~g~~d--------g~I~iwd~~-~~~~~~~~~ 338 (616)
.|++||+.+ +. ...+.. .+...+..++|+|||++|+.++.+ ..|++||+. ++. .....
T Consensus 162 ~i~~~~~~~~~~~~~~~-~~~l~~-----~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~-~~~~~ 234 (662)
T 3azo_A 162 FLAAVPLDGSAAADRSA-VRELSD-----DAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGR-FADTR 234 (662)
T ss_dssp EEEEEETTSTTTTCGGG-SEESSC-----SCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSC-EEEEE
T ss_pred EEEEEECCCCccccCCc-eeEEEe-----cCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCc-ccccE
Confidence 899999987 32 222210 122367788999999999987755 379999998 330 01233
Q ss_pred eeecCCCCCeEEEEEcCCCCeEEEEecCC--cEEEEeCCCCCCcceEecCCCCCC-------cceeEEECCCCCEEEEee
Q 048012 339 HVEKGHSDDITALKFSSDGRILLSRSFDG--SLKVWDLRKMKEPLKVFEDLPNNY-------AQTNVAFSPDEQLFLTGT 409 (616)
Q Consensus 339 ~~~~~h~~~V~~l~~spdg~~l~s~s~Dg--~v~lwd~~~~~~~~~~~~~~~~~~-------~v~~v~fspdg~~l~~gs 409 (616)
.....|...+..++|+|||++++++..++ .|.+||+.++ ...... ...... .+..++|++++++++++.
T Consensus 235 ~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~-~~~~l~-~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~ 312 (662)
T 3azo_A 235 TLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATG-AATQLC-RREEEFAGPLWTPGMRWFAPLANGLIAVVHG 312 (662)
T ss_dssp EEEEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTC-CEEESS-CCSSBSSCCCCSTTCCSEEECTTSCEEEEEB
T ss_pred EeCCCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCC-ceeecc-cccccccCccccccCceEeEeCCCEEEEEEE
Confidence 33445677899999999999888888888 5666666443 222222 111111 156799999999999987
Q ss_pred ccccccCCCceEEEE--eCCCCceEEEEecCCCCCeEEEEEcCCCCcEEEEeccCCCCceEEEecc
Q 048012 410 SVERESTTGGLLCFY--DREKLELVSRVGISPACSVVQCAWHPKLNQIFATAGDKSQGGTHILYDP 473 (616)
Q Consensus 410 ~~~~~~~~dg~i~iw--d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~~~~~~~v~~~ 473 (616)
. +.++|| |+.+++ +..+.. +...+..+ |++++..++..+... .....||.+
T Consensus 313 -------~-~~~~l~~~d~~~~~-~~~l~~-~~~~~~~~-~s~~~~~~~~~~~~~--~~~~~i~~~ 365 (662)
T 3azo_A 313 -------K-GAAVLGILDPESGE-LVDAAG-PWTEWAAT-LTVSGTRAVGVAASP--RTAYEVVEL 365 (662)
T ss_dssp -------S-SSCEEEEEETTTTE-EEECCS-SCCEEEEE-EEEETTEEEEEEEET--TEEEEEEEE
T ss_pred -------c-CccEEEEEECCCCc-EEEecC-CCCeEEEE-EecCCCEEEEEEcCC--CCCCEEEEE
Confidence 6 777787 666665 555543 34456655 244455444443321 344444443
No 171
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.71 E-value=3.8e-15 Score=152.16 Aligned_cols=277 Identities=11% Similarity=0.027 Sum_probs=179.8
Q ss_pred EecCCcccEEEEEECCCCCEEEEEEc----------CCcEEEEeCCCCccccccceecC--CCCCCceEEEEecCCCCeE
Q 048012 144 VLKGHTKIVSALAVDHSGSRVLSGSY----------DYTVRMYDFQGMNSRLQSFRQLE--PSEGHQVRNLSWSPTSDRF 211 (616)
Q Consensus 144 ~l~~H~~~V~~v~~sp~g~~lasgs~----------Dg~i~iwd~~~~~~~~~~~~~~~--~~~~~~v~~l~~sp~g~~l 211 (616)
.+..+..+ .++|+|+|++|++++. +++|.+||..+... ...+.... ..++.....++|+|+|++|
T Consensus 46 ~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~-~~~i~~~~~~~~~g~~p~~i~~spdg~~l 122 (361)
T 2oiz_A 46 MVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTF-EKEISLPPKRVQGLNYDGLFRQTTDGKFI 122 (361)
T ss_dssp EEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCE-EEEEEECTTBCCBCCCGGGEEECTTSSEE
T ss_pred EecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcE-EEEEEcCccccccCCCcceEEECCCCCEE
Confidence 34445555 8999999999998873 67899999875431 11221110 0123446789999999999
Q ss_pred EEEeC--CCeEEEEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEEEECCCccccceE
Q 048012 212 LCVTG--SAQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQV 289 (616)
Q Consensus 212 ~~~s~--d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~~~ 289 (616)
+++.. ++.|.+||+...++... + +. + .....+.+.|++...+++.+.||.+.+|++.........
T Consensus 123 ~v~n~~~~~~v~v~d~~~~~~~~~---------~--i~-~-~~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~ 189 (361)
T 2oiz_A 123 VLQNASPATSIGIVDVAKGDYVED---------V--TA-A-AGCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQ 189 (361)
T ss_dssp EEEEESSSEEEEEEETTTTEEEEE---------E--GG-G-TTEEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEE
T ss_pred EEECCCCCCeEEEEECCCCcEEEE---------E--ec-C-CCcceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeee
Confidence 98874 58999999997764211 0 11 1 122335678877678899999999999998652221111
Q ss_pred Eee-eccCCCCccEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCCCCCceeeecC------CC----CCeEEEEEcCCCC
Q 048012 290 IKP-KLARPGRVAVTTCAWDCDGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKG------HS----DDITALKFSSDGR 358 (616)
Q Consensus 290 ~~~-~~~~~~~~~v~~~~~sp~g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~------h~----~~V~~l~~spdg~ 358 (616)
... .....+..+ ..+.+++++..++..+.++.|.++|+... ....+..+.. +. .....++|+|+++
T Consensus 190 ~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~v~v~d~~~~--~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~ 266 (361)
T 2oiz_A 190 SRSKQMFSVKDDP-IFIAPALDKDKAHFVSYYGNVYSADFSGD--EVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASG 266 (361)
T ss_dssp EECCCCSCTTTSC-BCSCCEECSSEEEEEBTTSEEEEEECSSS--SCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTT
T ss_pred ccccceEcCCCCc-eEEEecccCCEEEEEeCCCeEEEEEecCC--CceecccccccCccccccccccCCeeEEEEecCCC
Confidence 110 001111111 12334567777777788999999998753 1111111110 00 1122378999988
Q ss_pred eEEEEec-----------CCcEEEEeCCCCCCcceEecCCCCCCcceeEEECCCCCEEEEeeccccccCCCceEEEEeCC
Q 048012 359 ILLSRSF-----------DGSLKVWDLRKMKEPLKVFEDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDRE 427 (616)
Q Consensus 359 ~l~s~s~-----------Dg~v~lwd~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~ 427 (616)
.++++.. .++|.+||+.+.+ .+..+... . +.+++|+|||++|++++ . +.|.+||+.
T Consensus 267 ~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~-~v~~i~~~---~-p~~ia~spdg~~l~v~n-------~-~~v~v~D~~ 333 (361)
T 2oiz_A 267 RMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQ-RVARIPGR---D-ALSMTIDQQRNLMLTLD-------G-GNVNVYDIS 333 (361)
T ss_dssp EEEEEEESSCCTTCTTCCCSEEEEEETTTTE-EEEEEECT---T-CCEEEEETTTTEEEEEC-------S-SCEEEEECS
T ss_pred eEEEEEccCCCcccccCCCceEEEEECCCCc-EEEEEecC---C-eeEEEECCCCCEEEEeC-------C-CeEEEEECC
Confidence 8777643 3479999998753 34444332 2 88999999999999886 5 999999999
Q ss_pred CC--ceEEEEecCCCCCeEEEEEcCCCC
Q 048012 428 KL--ELVSRVGISPACSVVQCAWHPKLN 453 (616)
Q Consensus 428 ~~--~~~~~~~~~~~~~v~~~~~~p~~~ 453 (616)
++ +++.++. ........++++|+|+
T Consensus 334 t~~l~~~~~i~-~~G~~P~~~~~~p~G~ 360 (361)
T 2oiz_A 334 QPEPKLLRTIE-GAAEASLQVQFHPVGG 360 (361)
T ss_dssp SSSCEEEEEET-TSCSSEEEEEECCCSC
T ss_pred CCcceeeEEec-cCCCCcEEEEecCCCC
Confidence 99 8888873 2345678899999875
No 172
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.71 E-value=1.8e-14 Score=142.04 Aligned_cols=243 Identities=10% Similarity=0.094 Sum_probs=167.2
Q ss_pred CceEEEEecCCCCeEEEEeCCCeEEEEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEc-CCCCCEEEEEeC-CCC
Q 048012 197 HQVRNLSWSPTSDRFLCVTGSAQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWH-PKTKETILTSSE-DGS 274 (616)
Q Consensus 197 ~~v~~l~~sp~g~~l~~~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~-p~~~~~l~s~s~-Dg~ 274 (616)
..+.++++++++..+++...++.|.+||.++..+..+.. .....++...+..+++. +++ .++++... ++.
T Consensus 30 ~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~g~~~~~~~~-------~~~~~~~~~~p~~i~~~~~~g-~l~v~~~~~~~~ 101 (286)
T 1q7f_A 30 TEPSGVAVNAQNDIIVADTNNHRIQIFDKEGRFKFQFGE-------CGKRDSQLLYPNRVAVVRNSG-DIIVTERSPTHQ 101 (286)
T ss_dssp SCEEEEEECTTCCEEEEEGGGTEEEEECTTSCEEEEECC-------BSSSTTCBSSEEEEEEETTTT-EEEEEECGGGCE
T ss_pred CCCceEEECCCCCEEEEECCCCEEEEECCCCcEEEEecc-------cCCCcccccCceEEEEEcCCC-eEEEEcCCCCCE
Confidence 458999999999888877889999999988655433211 11123456678999995 544 45555533 789
Q ss_pred EEEEECCCccccceEEeeeccCCCCccEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCCCCCceeeec--CCCCCeEEEE
Q 048012 275 LRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWDCDGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEK--GHSDDITALK 352 (616)
Q Consensus 275 v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~--~h~~~V~~l~ 352 (616)
|++||. +++....+. ..+...+.+++++++|+++++...++.|++||... ..+..+. .+...+.+|+
T Consensus 102 i~~~d~-~g~~~~~~~-----~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g-----~~~~~~~~~~~~~~p~~i~ 170 (286)
T 1q7f_A 102 IQIYNQ-YGQFVRKFG-----ATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNG-----NVLHKFGCSKHLEFPNGVV 170 (286)
T ss_dssp EEEECT-TSCEEEEEC-----TTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTS-----CEEEEEECTTTCSSEEEEE
T ss_pred EEEECC-CCcEEEEec-----CccCCCceEEEEeCCCCEEEEECCCCEEEEEcCCC-----CEEEEeCCCCccCCcEEEE
Confidence 999994 443332221 12223688999999999888888889999999653 2333332 4556789999
Q ss_pred EcCCCCeEEEEecCCcEEEEeCCCCCCcceEecCCCCCCcceeEEECCCCCEEEEeeccccccCCCc-eEEEEeCCCCce
Q 048012 353 FSSDGRILLSRSFDGSLKVWDLRKMKEPLKVFEDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGG-LLCFYDREKLEL 431 (616)
Q Consensus 353 ~spdg~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg-~i~iwd~~~~~~ 431 (616)
++++|+++++...++.|++||... ..+..+........+..++++++|+++++.. .++ .|.+||. +++.
T Consensus 171 ~~~~g~l~v~~~~~~~i~~~~~~g--~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~-------~~~~~i~~~~~-~g~~ 240 (286)
T 1q7f_A 171 VNDKQEIFISDNRAHCVKVFNYEG--QYLRQIGGEGITNYPIGVGINSNGEILIADN-------HNNFNLTIFTQ-DGQL 240 (286)
T ss_dssp ECSSSEEEEEEGGGTEEEEEETTC--CEEEEESCTTTSCSEEEEEECTTCCEEEEEC-------SSSCEEEEECT-TSCE
T ss_pred ECCCCCEEEEECCCCEEEEEcCCC--CEEEEEccCCccCCCcEEEECCCCCEEEEeC-------CCCEEEEEECC-CCCE
Confidence 999999888888899999999753 2344443322224588999999999888876 565 9999995 5677
Q ss_pred EEEEecCCC-CCeEEEEEcCCCCcEEEEeccCCCCceEEEecc
Q 048012 432 VSRVGISPA-CSVVQCAWHPKLNQIFATAGDKSQGGTHILYDP 473 (616)
Q Consensus 432 ~~~~~~~~~-~~v~~~~~~p~~~~l~~~~~d~~~~~~~~v~~~ 473 (616)
+..+..... ..+..++|+|+++ |++++. ++.+.+|++
T Consensus 241 ~~~~~~~~~~~~~~~i~~~~~g~-l~vs~~----~~~v~v~~~ 278 (286)
T 1q7f_A 241 ISALESKVKHAQCFDVALMDDGS-VVLASK----DYRLYIYRY 278 (286)
T ss_dssp EEEEEESSCCSCEEEEEEETTTE-EEEEET----TTEEEEEEC
T ss_pred EEEEcccCCCCcceeEEECCCCc-EEEECC----CCeEEEEEc
Confidence 766654222 2366788888765 444443 567777765
No 173
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.70 E-value=1.8e-15 Score=169.99 Aligned_cols=238 Identities=13% Similarity=0.095 Sum_probs=154.6
Q ss_pred eEEEEecCCCCeEEEEeCCCeEEEEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCC------
Q 048012 199 VRNLSWSPTSDRFLCVTGSAQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSED------ 272 (616)
Q Consensus 199 v~~l~~sp~g~~l~~~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~D------ 272 (616)
..++.|+|+|.+|+++ ++.|++||+.++....+..+ .....+......+.|+|+++ .|+.++.+
T Consensus 19 ~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~Spdg~-~l~~~~~~~~~~r~ 88 (740)
T 4a5s_A 19 LYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLEN-------STFDEFGHSINDYSISPDGQ-FILLEYNYVKQWRH 88 (740)
T ss_dssp CCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECT-------TTTTTCCSCCCEEEECTTSS-EEEEEEEEEECSSS
T ss_pred ccccEECCCCcEEEEc--CCcEEEEECCCCceEEEEec-------hhhhhhcccccceEECCCCC-EEEEEECCeeeEEE
Confidence 5689999999887775 99999999987765333211 11112222335589999985 77777765
Q ss_pred ---CCEEEEECCCccccceEEeeeccCCCCccEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCCCCCceeeecCCCCCe-
Q 048012 273 ---GSLRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWDCDGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHSDDI- 348 (616)
Q Consensus 273 ---g~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V- 348 (616)
+.+.+||+.+++... + ..+...+...+|||||+.||.+. ++.|++|++.++. .......++...+
T Consensus 89 ~~~~~~~~~d~~~~~~~~-l------~~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~---~~~lt~~g~~~~~~ 157 (740)
T 4a5s_A 89 SYTASYDIYDLNKRQLIT-E------ERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLP---SYRITWTGKEDIIY 157 (740)
T ss_dssp CEEEEEEEEETTTTEECC-S------SCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSC---CEECCSCCBTTTEE
T ss_pred ccceEEEEEECCCCcEEE-c------ccCCCcceeeEECCCCCEEEEEE-CCeEEEEECCCCc---eEEEcCCCCcccee
Confidence 556799998865432 1 12333689999999999999885 7899999998762 1111222332222
Q ss_pred ----------------EEEEEcCCCCeEEEEecCC------------------------------------cEEEEeCCC
Q 048012 349 ----------------TALKFSSDGRILLSRSFDG------------------------------------SLKVWDLRK 376 (616)
Q Consensus 349 ----------------~~l~~spdg~~l~s~s~Dg------------------------------------~v~lwd~~~ 376 (616)
.++.|||||++||..+.|. +|++||+.+
T Consensus 158 ~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~ 237 (740)
T 4a5s_A 158 NGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDS 237 (740)
T ss_dssp ESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTS
T ss_pred cCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCC
Confidence 3589999999999886432 477888876
Q ss_pred ---CCC-cceEecCC----CCCCcceeEEECCCCCEEEEeeccccccCCCceEEEEeCCCCc----eE--E-EEecCCCC
Q 048012 377 ---MKE-PLKVFEDL----PNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREKLE----LV--S-RVGISPAC 441 (616)
Q Consensus 377 ---~~~-~~~~~~~~----~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~~~----~~--~-~~~~~~~~ 441 (616)
+.. ....+... .+...+..++|+|||++++..... ...+..|++||+.+++ +. . .+...+..
T Consensus 238 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r---~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~ 314 (740)
T 4a5s_A 238 LSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRR---IQNYSVMDICDYDESSGRWNCLVARQHIEMSTTG 314 (740)
T ss_dssp CCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEES---STTEEEEEEEEEETTTTEEEECGGGCEEEECSSS
T ss_pred CCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCC---CCCEEEEEEEECCCCccccceeEEEEeeeccCCc
Confidence 421 12222110 134558899999999977765420 1134579999999887 21 1 11122333
Q ss_pred CeE-----EEEEcCCCCcEE-EEec
Q 048012 442 SVV-----QCAWHPKLNQIF-ATAG 460 (616)
Q Consensus 442 ~v~-----~~~~~p~~~~l~-~~~~ 460 (616)
.|. .++|+|+++.|+ ..+.
T Consensus 315 ~v~~~~~~~p~fspDG~~l~~~~s~ 339 (740)
T 4a5s_A 315 WVGRFRPSEPHFTLDGNSFYKIISN 339 (740)
T ss_dssp CSSSSSCCCCEECTTSSEEEEEEEC
T ss_pred eEccCcCCCceEcCCCCEEEEEEEc
Confidence 333 689999999887 5543
No 174
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.68 E-value=3.9e-14 Score=158.37 Aligned_cols=288 Identities=15% Similarity=0.063 Sum_probs=188.4
Q ss_pred CCCCEEEEEEcCC-----cEEEEeCCCCccc-cccceecCCCCCCceEEEEecCCCCeEEEEeCCC-----eEEEEECCC
Q 048012 159 HSGSRVLSGSYDY-----TVRMYDFQGMNSR-LQSFRQLEPSEGHQVRNLSWSPTSDRFLCVTGSA-----QAKIYDRDG 227 (616)
Q Consensus 159 p~g~~lasgs~Dg-----~i~iwd~~~~~~~-~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~s~d~-----~v~vwd~~~ 227 (616)
|+|.+++....++ .|.+.+..++... +.....+...+...+..++|||+|++|+.+...+ .|++||+.+
T Consensus 81 ~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~t 160 (710)
T 2xdw_A 81 KKGKRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPNILSDDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDG 160 (710)
T ss_dssp EETTEEEEEEECSSCSSCEEEEESSTTSCCEEEECGGGGCTTSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTT
T ss_pred EECCEEEEEEEcCCceEEEEEEEcCCCCCcEEEECHHHhccCCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCC
Confidence 7888877655432 2333333322111 1011122222333588999999999998776543 899999998
Q ss_pred CeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCC----------------EEEEECCCccccceEEe
Q 048012 228 LTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGS----------------LRIWDVNEFKSQKQVIK 291 (616)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~----------------v~iwd~~~~~~~~~~~~ 291 (616)
++..... ..+ ..+..++|+|+++ .|+.++.++. |++|++.+......++.
T Consensus 161 g~~~~~~------------~~~-~~~~~~~wspDg~-~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~ 226 (710)
T 2xdw_A 161 AKELPDV------------LER-VKFSCMAWTHDGK-GMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCA 226 (710)
T ss_dssp TEEEEEE------------EEE-ECSCCEEECTTSS-EEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEE
T ss_pred CCCCccc------------ccC-cccceEEEEeCCC-EEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEe
Confidence 8753321 111 1256789999985 6777777665 99999987654323322
Q ss_pred eeccCCCCccEEEEEECCCCCeEEEEeC-----CCcEEEEeCCC------CCCCCCceeeecCCCCCeEEEEEcCCCCeE
Q 048012 292 PKLARPGRVAVTTCAWDCDGKCIAGGIG-----DGSIQVWNLKP------GWGSRPDIHVEKGHSDDITALKFSSDGRIL 360 (616)
Q Consensus 292 ~~~~~~~~~~v~~~~~sp~g~~l~~g~~-----dg~I~iwd~~~------~~~~~~~~~~~~~h~~~V~~l~~spdg~~l 360 (616)
.. ..+...+..+.|+|+|++|+.++. +..|++||+.+ +. .....+..+...+.. .|+++|+.|
T Consensus 227 ~~--~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~---~~~~~l~~~~~~~~~-~~s~dg~~l 300 (710)
T 2xdw_A 227 EF--PDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGI---LKWVKLIDNFEGEYD-YVTNEGTVF 300 (710)
T ss_dssp CC--TTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSS---CCCEEEECSSSSCEE-EEEEETTEE
T ss_pred cc--CCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCc---cceEEeeCCCCcEEE-EEeccCCEE
Confidence 11 122335788999999999988765 56899999875 31 134455566666655 488999888
Q ss_pred EEEecCC----cEEEEeCCCCCC-cceEecCCCCCCcceeEEECCCCCEEEEeeccccccCCCc--eEEEEeCCCCceEE
Q 048012 361 LSRSFDG----SLKVWDLRKMKE-PLKVFEDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGG--LLCFYDREKLELVS 433 (616)
Q Consensus 361 ~s~s~Dg----~v~lwd~~~~~~-~~~~~~~~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg--~i~iwd~~~~~~~~ 433 (616)
+..+..+ .|.+||+.+... ..+.+..+.....+..++|++++.++++.. .++ .|++|++.+++.+.
T Consensus 301 ~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~-------~~g~~~l~~~~~~~g~~~~ 373 (710)
T 2xdw_A 301 TFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYL-------HDVKNTLQLHDLATGALLK 373 (710)
T ss_dssp EEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEE-------ETTEEEEEEEETTTCCEEE
T ss_pred EEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEEE-------ECCEEEEEEEECCCCCEEE
Confidence 7776533 599999986532 123333333323577899997777777776 566 57778887888888
Q ss_pred EEecCCCCCeEEEEEcCCCCcEEEEeccCCCCceEEEeccc
Q 048012 434 RVGISPACSVVQCAWHPKLNQIFATAGDKSQGGTHILYDPR 474 (616)
Q Consensus 434 ~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~~~~~~~v~~~~ 474 (616)
.+... .+.|..+.++|++..|+.+..+......+.+|++.
T Consensus 374 ~l~~~-~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~ 413 (710)
T 2xdw_A 374 IFPLE-VGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLT 413 (710)
T ss_dssp EECCC-SSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETT
T ss_pred ecCCC-CceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECC
Confidence 88764 66788999999988888776544445677777764
No 175
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.68 E-value=6.9e-13 Score=131.05 Aligned_cols=274 Identities=9% Similarity=0.043 Sum_probs=186.8
Q ss_pred EEecCCcccEEEEEECCCCCEEEEEEcCCcEEEEeCCCCccccccceecCCCCCCceEEEEecCCCCeEEEEeCCCeEEE
Q 048012 143 IVLKGHTKIVSALAVDHSGSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSDRFLCVTGSAQAKI 222 (616)
Q Consensus 143 ~~l~~H~~~V~~v~~sp~g~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~s~d~~v~v 222 (616)
..+..+...+.+|+++++|.++++...++.|.+||.. .. ...+ ........+.+++++++|..+++...++.|..
T Consensus 8 ~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~--~~~~--~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~ 82 (299)
T 2z2n_A 8 LNLTNQDTGPYGITVSDKGKVWITQHKANMISCINLD-GK--ITEY--PLPTPDAKVMCLTISSDGEVWFTENAANKIGR 82 (299)
T ss_dssp EECCSSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CC--EEEE--ECSSTTCCEEEEEECTTSCEEEEETTTTEEEE
T ss_pred EcCCCcCCCccceEECCCCCEEEEecCCCcEEEEcCC-CC--eEEe--cCCcccCceeeEEECCCCCEEEeCCCCCeEEE
Confidence 3455667889999999999988876668899999977 22 1111 11223456999999999987777666889999
Q ss_pred EECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEEEECCCccccceEEeeeccCCCCccE
Q 048012 223 YDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPGRVAV 302 (616)
Q Consensus 223 wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v 302 (616)
|+..+. +..+. .......+.++++.+++ .++++...++.|.+||. ++... .+... .....+
T Consensus 83 ~~~~g~-~~~~~-----------~~~~~~~~~~i~~~~~g-~l~v~~~~~~~i~~~d~-~g~~~-~~~~~----~~~~~~ 143 (299)
T 2z2n_A 83 ITKKGI-IKEYT-----------LPNPDSAPYGITEGPNG-DIWFTEMNGNRIGRITD-DGKIR-EYELP----NKGSYP 143 (299)
T ss_dssp ECTTSC-EEEEE-----------CSSTTCCEEEEEECTTS-CEEEEETTTTEEEEECT-TCCEE-EEECS----STTCCE
T ss_pred ECCCCc-EEEEe-----------CCCcCCCceeeEECCCC-CEEEEecCCceEEEECC-CCCEE-EecCC----CCCCCC
Confidence 998733 22111 11234568899999976 57777777889999998 43322 11111 122368
Q ss_pred EEEEECCCCCeEEEEeCCCcEEEEeCCCCCCCCCceee-ecCCCCCeEEEEEcCCCCeEEEEecCCcEEEEeCCCCCCcc
Q 048012 303 TTCAWDCDGKCIAGGIGDGSIQVWNLKPGWGSRPDIHV-EKGHSDDITALKFSSDGRILLSRSFDGSLKVWDLRKMKEPL 381 (616)
Q Consensus 303 ~~~~~sp~g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~-~~~h~~~V~~l~~spdg~~l~s~s~Dg~v~lwd~~~~~~~~ 381 (616)
..++++++|+++++...++.|.+||. ++ ..... ...+...+.+|+++++|+++++...++.|.+||. ++. +
T Consensus 144 ~~i~~~~~g~l~v~~~~~~~i~~~~~-~g----~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~--~ 215 (299)
T 2z2n_A 144 SFITLGSDNALWFTENQNNAIGRITE-SG----DITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGE--I 215 (299)
T ss_dssp EEEEECTTSCEEEEETTTTEEEEECT-TC----CEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCC--E
T ss_pred ceEEEcCCCCEEEEeCCCCEEEEEcC-CC----cEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCc--E
Confidence 89999999988887777889999998 44 12221 2334456889999999998777777889999998 443 2
Q ss_pred eEecCCCCCCcceeEEECCCCCEEEEeeccccccCCCceEEEEeCCCCceEEEEecC-CCCCeEEEEEcCCCCcEEEE
Q 048012 382 KVFEDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREKLELVSRVGIS-PACSVVQCAWHPKLNQIFAT 458 (616)
Q Consensus 382 ~~~~~~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~v~~~~~~p~~~~l~~~ 458 (616)
..+........+.+++++++|+++++.. .++.|.+||. +++ +..+... ....+.++++ +++..++++
T Consensus 216 ~~~~~~~~~~~~~~i~~~~~g~l~v~~~-------~~~~i~~~d~-~g~-~~~~~~~~~~~~~~~i~~-~~g~l~v~~ 283 (299)
T 2z2n_A 216 TEFKIPTPNARPHAITAGAGIDLWFTEW-------GANKIGRLTS-NNI-IEEYPIQIKSAEPHGICF-DGETIWFAM 283 (299)
T ss_dssp EEEECSSTTCCEEEEEECSTTCEEEEET-------TTTEEEEEET-TTE-EEEEECSSSSCCEEEEEE-CSSCEEEEE
T ss_pred EEEECCCCCCCceeEEECCCCCEEEecc-------CCceEEEECC-CCc-eEEEeCCCCCCccceEEe-cCCCEEEEe
Confidence 2232222334588999999999777765 5788999998 454 3444322 2356888888 665544443
No 176
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.68 E-value=8.1e-14 Score=140.45 Aligned_cols=256 Identities=8% Similarity=-0.022 Sum_probs=174.2
Q ss_pred CCceEEEEecCCCCeEEEEeCC------------------------CeEEEEECCCCeeeeEeeCceeEeecccCCCccc
Q 048012 196 GHQVRNLSWSPTSDRFLCVTGS------------------------AQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHIC 251 (616)
Q Consensus 196 ~~~v~~l~~sp~g~~l~~~s~d------------------------~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~ 251 (616)
-..+.+|+++++|+.+++...+ +.|.+||..+..+.... ..++..
T Consensus 23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~-----------~~~~~~ 91 (329)
T 3fvz_A 23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSS-----------GKNLFY 91 (329)
T ss_dssp CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEE-----------CTTTCS
T ss_pred cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEecc-----------CCCccC
Confidence 3459999999999988877777 47999998765542211 124556
Q ss_pred ceEEEEEcCCCCCEEEEEeCCCCEEEEECCCcc-ccceEEeee---ccCCCCccEEEEEECC-CCCeEEEEe-CCCcEEE
Q 048012 252 GLTCGEWHPKTKETILTSSEDGSLRIWDVNEFK-SQKQVIKPK---LARPGRVAVTTCAWDC-DGKCIAGGI-GDGSIQV 325 (616)
Q Consensus 252 ~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~-~~~~~~~~~---~~~~~~~~v~~~~~sp-~g~~l~~g~-~dg~I~i 325 (616)
....+++++++ +++++...++.|++||..... ....+.... ....+-..+..++++| +++++++.+ .++.|++
T Consensus 92 ~p~gia~d~~g-~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~ 170 (329)
T 3fvz_A 92 LPHGLSIDTDG-NYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQ 170 (329)
T ss_dssp SEEEEEECTTS-CEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEE
T ss_pred CceEEEECCCC-CEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEE
Confidence 78899999987 488888889999999986432 222221100 0012223588999999 888888886 6999999
Q ss_pred EeCCCCCCCCCceeeec----------CCCCCeEEEEEcCC-CCeEEEEecCCcEEEEeCCCCCCcceEecCCCCCCcce
Q 048012 326 WNLKPGWGSRPDIHVEK----------GHSDDITALKFSSD-GRILLSRSFDGSLKVWDLRKMKEPLKVFEDLPNNYAQT 394 (616)
Q Consensus 326 wd~~~~~~~~~~~~~~~----------~h~~~V~~l~~spd-g~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~v~ 394 (616)
||... ..+..+. ++-.....|+++|+ ++++++...+++|++||..++ ..+..+........+.
T Consensus 171 ~~~~g-----~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G-~~~~~~~~~~~~~~~~ 244 (329)
T 3fvz_A 171 FSPSG-----KFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTK-EFVREIKHASFGRNVF 244 (329)
T ss_dssp ECTTS-----CEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTC-CEEEEECCTTTTTCEE
T ss_pred EcCCC-----CEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCC-cEEEEEeccccCCCcc
Confidence 99543 2333332 22344899999998 778888888999999999854 4455554434445688
Q ss_pred eEEECCCCCEEEEeeccccccCCCceEEEEeCCCCceEEEEec--CCCCCeEEEEEcCCCCcEEEEeccCCCCceEEEec
Q 048012 395 NVAFSPDEQLFLTGTSVERESTTGGLLCFYDREKLELVSRVGI--SPACSVVQCAWHPKLNQIFATAGDKSQGGTHILYD 472 (616)
Q Consensus 395 ~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~~~~~~~~~~--~~~~~v~~~~~~p~~~~l~~~~~d~~~~~~~~v~~ 472 (616)
.++|+| +..+++.+........+..|++||+.+++.+..+.. .+...+..++++|++ .|+++... .+.+.+|+
T Consensus 245 ~~~~~p-g~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG-~lyvad~~---~~~I~~~~ 319 (329)
T 3fvz_A 245 AISYIP-GFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDG-TVYIGDAH---TNTVWKFT 319 (329)
T ss_dssp EEEEET-TEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTS-EEEEEESS---SCCEEEEE
T ss_pred eeeecC-CEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCC-CEEEEECC---CCEEEEEe
Confidence 999999 444444332222223567899999999999888742 233557888888887 45554442 56777776
Q ss_pred cc
Q 048012 473 PR 474 (616)
Q Consensus 473 ~~ 474 (616)
+.
T Consensus 320 ~~ 321 (329)
T 3fvz_A 320 LT 321 (329)
T ss_dssp EE
T ss_pred CC
Confidence 54
No 177
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.68 E-value=1.6e-14 Score=147.52 Aligned_cols=289 Identities=15% Similarity=0.085 Sum_probs=180.0
Q ss_pred CCCEEEEEE------cCCcEEEEeCCCCccccccceecCCCCCCceEEEEecCCCCeEEEEeC----------CCeEEEE
Q 048012 160 SGSRVLSGS------YDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSDRFLCVTG----------SAQAKIY 223 (616)
Q Consensus 160 ~g~~lasgs------~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~s~----------d~~v~vw 223 (616)
+++++++.. .|+.|.+||..++.. . ..+. .... . .++|+|+|++|+++.. ++.|.+|
T Consensus 14 ~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~-~---~~i~-~g~~-p-~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~ 86 (361)
T 2oiz_A 14 QENRIYVMDSVFMHLTESRVHVYDYTNGKF-L---GMVP-TAFN-G-HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVW 86 (361)
T ss_dssp GGGEEEEEECCGGGGGGCEEEEEETTTCCE-E---EEEE-CCEE-E-EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEE
T ss_pred CCCEEEEECCCCCccccCeEEEEECCCCeE-E---EEec-CCCC-C-ceEECCCCCEEEEEEecccccccCCCCCEEEEE
Confidence 455555543 377999999876532 1 1221 1222 3 8999999999998862 5679999
Q ss_pred ECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEe-C-CCCEEEEECCCccccceEEeeeccCCCCcc
Q 048012 224 DRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSS-E-DGSLRIWDVNEFKSQKQVIKPKLARPGRVA 301 (616)
Q Consensus 224 d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s-~-Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~ 301 (616)
|..+.++...... ......+......++|+|+++ +|+++. . +++|.+||+.+.+....+ ... . .
T Consensus 87 d~~t~~~~~~i~~------~~~~~~~g~~p~~i~~spdg~-~l~v~n~~~~~~v~v~d~~~~~~~~~~---i~~-~---~ 152 (361)
T 2oiz_A 87 DADKLTFEKEISL------PPKRVQGLNYDGLFRQTTDGK-FIVLQNASPATSIGIVDVAKGDYVEDV---TAA-A---G 152 (361)
T ss_dssp ETTTCCEEEEEEE------CTTBCCBCCCGGGEEECTTSS-EEEEEEESSSEEEEEEETTTTEEEEEE---GGG-T---T
T ss_pred ECcCCcEEEEEEc------CccccccCCCcceEEECCCCC-EEEEECCCCCCeEEEEECCCCcEEEEE---ecC-C---C
Confidence 9887654322110 000011223456789999986 566554 3 689999999886543320 111 1 1
Q ss_pred EEEEEECCCC-CeEEEEeCCCcEEEEeCCCCCCCCCce------eeecCCCCCeEEEEEcCCCCeEEEEecCCcEEEEeC
Q 048012 302 VTTCAWDCDG-KCIAGGIGDGSIQVWNLKPGWGSRPDI------HVEKGHSDDITALKFSSDGRILLSRSFDGSLKVWDL 374 (616)
Q Consensus 302 v~~~~~sp~g-~~l~~g~~dg~I~iwd~~~~~~~~~~~------~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~v~lwd~ 374 (616)
...+.+.|++ ..+++.+.||.+.+|++.... ... ..+..+..++ .+.+++++..++..+.++.|.+||+
T Consensus 153 ~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g---~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~v~v~d~ 228 (361)
T 2oiz_A 153 CWSVIPQPNRPRSFMTICGDGGLLTINLGEDG---KVASQSRSKQMFSVKDDPI-FIAPALDKDKAHFVSYYGNVYSADF 228 (361)
T ss_dssp EEEEEECTTSSSEEEEEETTSSEEEEEECTTS---SEEEEEECCCCSCTTTSCB-CSCCEECSSEEEEEBTTSEEEEEEC
T ss_pred cceeEEcCCCCeeEEEECCCCcEEEEEECCCC---cEeeeccccceEcCCCCce-EEEecccCCEEEEEeCCCeEEEEEe
Confidence 2335567765 677888899999999986421 222 1222222222 3344677888888888999999998
Q ss_pred CCCCCcc-eEecCCC--------CCCcceeEEECCCCCEEEEeecccc--cc--CCCceEEEEeCCCCceEEEEecCCCC
Q 048012 375 RKMKEPL-KVFEDLP--------NNYAQTNVAFSPDEQLFLTGTSVER--ES--TTGGLLCFYDREKLELVSRVGISPAC 441 (616)
Q Consensus 375 ~~~~~~~-~~~~~~~--------~~~~v~~v~fspdg~~l~~gs~~~~--~~--~~dg~i~iwd~~~~~~~~~~~~~~~~ 441 (616)
......+ ..+.... .......++|+|+++.++++..... .. ...+.|.+||+.+++.+.++....
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~-- 306 (361)
T 2oiz_A 229 SGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD-- 306 (361)
T ss_dssp SSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT--
T ss_pred cCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC--
Confidence 7533211 1111100 0011224799999998887652000 00 014589999999999999997643
Q ss_pred CeEEEEEcCCCCcEEEEeccCCCCceEEEecccCCCCC--cEEEE
Q 048012 442 SVVQCAWHPKLNQIFATAGDKSQGGTHILYDPRLSERG--ALVCV 484 (616)
Q Consensus 442 ~v~~~~~~p~~~~l~~~~~d~~~~~~~~v~~~~~s~~g--~~l~s 484 (616)
+..++|+|++++|+++. .+.+.|||++ .| +.+.+
T Consensus 307 -p~~ia~spdg~~l~v~n-----~~~v~v~D~~---t~~l~~~~~ 342 (361)
T 2oiz_A 307 -ALSMTIDQQRNLMLTLD-----GGNVNVYDIS---QPEPKLLRT 342 (361)
T ss_dssp -CCEEEEETTTTEEEEEC-----SSCEEEEECS---SSSCEEEEE
T ss_pred -eeEEEECCCCCEEEEeC-----CCeEEEEECC---CCcceeeEE
Confidence 89999999999888766 2678899876 36 55544
No 178
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.67 E-value=1.5e-14 Score=146.71 Aligned_cols=260 Identities=13% Similarity=0.141 Sum_probs=167.3
Q ss_pred cccEEEEEECCCCCEEEEEE---------cCCcEEEEeCCCCccccccceecCCCCCCceEEEEecCCCCeEEEEeCC--
Q 048012 149 TKIVSALAVDHSGSRVLSGS---------YDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSDRFLCVTGS-- 217 (616)
Q Consensus 149 ~~~V~~v~~sp~g~~lasgs---------~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~s~d-- 217 (616)
...+..++| +|++|+... .++.|.+|++.++.. +.+ ..+..+.|||+|++|+.++.+
T Consensus 14 ~~~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~-----~~l-----~~~~~~~~SpDg~~la~~~~~~~ 81 (347)
T 2gop_A 14 FAYLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNAR-----RFI-----ENATMPRISPDGKKIAFMRANEE 81 (347)
T ss_dssp SCEEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCE-----EEE-----ESCEEEEECTTSSEEEEEEEETT
T ss_pred eEEcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCce-----EEc-----ccCCCeEECCCCCEEEEEEeccC
Confidence 345777788 888887642 367799999887531 112 348899999999999987753
Q ss_pred -C--eEEEEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeC-----------------------
Q 048012 218 -A--QAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSE----------------------- 271 (616)
Q Consensus 218 -~--~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~----------------------- 271 (616)
+ .|.+|++.+.+...+ ..+.. +..+.|+|++. .|+.++.
T Consensus 82 ~~~~~l~~~~~~~g~~~~l-------------~~~~~-~~~~~wspdg~-~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 146 (347)
T 2gop_A 82 KKVSEIWVADLETLSSKKI-------------LEAKN-IRSLEWNEDSR-KLLIVGFKRREDEDFIFEDDVPAWFDDLGF 146 (347)
T ss_dssp TTEEEEEEEETTTTEEEEE-------------EEESE-EEEEEECTTSS-EEEEEEECCCC---------CCCC------
T ss_pred CCcceEEEEECCCCceEEE-------------EcCCC-ccceeECCCCC-EEEEEEccCCCcCCcEEEcccceeecCccc
Confidence 2 478888887664332 11122 88999999985 5555542
Q ss_pred ----CCCEEEEECCCccccceEEeeeccCCCCccEEEEEECCCCCeEEEEeCCC-------cEEEEeCCCCCCCCCceee
Q 048012 272 ----DGSLRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWDCDGKCIAGGIGDG-------SIQVWNLKPGWGSRPDIHV 340 (616)
Q Consensus 272 ----Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~g~~dg-------~I~iwd~~~~~~~~~~~~~ 340 (616)
...|++||+.+++....+.. . .+..++|+|+| +++++..++ ...||.+.++ ....
T Consensus 147 ~~~~~~~l~~~d~~~~~~~~~l~~-~-------~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~-----~~~~ 212 (347)
T 2gop_A 147 FDGEKTTFWIFDTESEEVIEEFEK-P-------RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDG-----KEEK 212 (347)
T ss_dssp ---CEEEEEEEETTTTEEEEEEEE-E-------TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEETT-----EEEE
T ss_pred ccCccceEEEEECCCCeEEeeecC-C-------CcccccCCCCe-EEEEEecccccccccccccEEEeCCC-----ceEE
Confidence 25699999987654233322 1 35788999999 877776542 3344444333 2233
Q ss_pred ecCCCCCeEEEEEcCCCCeEEEEecC--------CcEEEEeCCCCCCcceEecCCCCCCccee-EEECCCCCEEEEeecc
Q 048012 341 EKGHSDDITALKFSSDGRILLSRSFD--------GSLKVWDLRKMKEPLKVFEDLPNNYAQTN-VAFSPDEQLFLTGTSV 411 (616)
Q Consensus 341 ~~~h~~~V~~l~~spdg~~l~s~s~D--------g~v~lwd~~~~~~~~~~~~~~~~~~~v~~-v~fspdg~~l~~gs~~ 411 (616)
+..+ ..+..+ +|||++|+.++.+ ..|.+|| + +........ +...+.. +.|+ ++ ++++++
T Consensus 213 l~~~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~-~~~~~l~~~--~~~~~~~~~~~s-dg-~~~~~~-- 280 (347)
T 2gop_A 213 MFEK-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--G-KEVMGILDE--VDRGVGQAKIKD-GK-VYFTLF-- 280 (347)
T ss_dssp EEEE-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--S-SCEEESSTT--CCSEEEEEEEET-TE-EEEEEE--
T ss_pred eccC-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--C-CceEecccc--CCcccCCccEEc-Cc-EEEEEe--
Confidence 3334 455554 9999999888754 3677887 2 222222222 2344775 8999 88 888887
Q ss_pred ccccCCCceEEEEeCCCCceEEEEecCCCCCeEEEEEcCCCCcEEEEeccCCCCceEEEeccc
Q 048012 412 ERESTTGGLLCFYDREKLELVSRVGISPACSVVQCAWHPKLNQIFATAGDKSQGGTHILYDPR 474 (616)
Q Consensus 412 ~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~~~~~~~v~~~~ 474 (616)
.++.++|| +.+++....+ .+...|..++|+| ..++++..+ +....||.+.
T Consensus 281 -----~~~~~~l~-~~~g~~~~~~--~~~~~v~~~~~s~--~~~~~~~~~---~~~~~l~~~~ 330 (347)
T 2gop_A 281 -----EEGSVNLY-IWDGEIKPIA--KGRHWIMGFDVDE--IVVYLKETA---TRLRELFTWD 330 (347)
T ss_dssp -----ETTEEEEE-EESSSEEEEE--CSSSEEEEEEESS--SEEEEEECS---SSCCEEEEES
T ss_pred -----cCCcEEEE-EcCCceEEEe--cCCCeEEeeeeeC--cEEEEEcCC---CChHHheEeC
Confidence 78899999 8766654433 2456789999999 555555543 3333555543
No 179
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.65 E-value=2.6e-15 Score=155.11 Aligned_cols=229 Identities=8% Similarity=-0.009 Sum_probs=148.9
Q ss_pred eEEEEecCCCCeEEEEeCC---CeEEEEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCE
Q 048012 199 VRNLSWSPTSDRFLCVTGS---AQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSL 275 (616)
Q Consensus 199 v~~l~~sp~g~~l~~~s~d---~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v 275 (616)
+..++|+|+|++|+.+... ..|.+|++.+.+...+ ..++......+.|+|++ ..|+.++.++.|
T Consensus 38 ~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l------------~~~~~~~~~~~~~spdg-~~l~~~~~~~~l 104 (396)
T 3c5m_A 38 FYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQL------------TEGKGDNTFGGFISTDE-RAFFYVKNELNL 104 (396)
T ss_dssp TTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEEC------------CCSSCBCTTTCEECTTS-SEEEEEETTTEE
T ss_pred eecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEe------------ecCCCCccccceECCCC-CEEEEEEcCCcE
Confidence 5678999999998877543 4788889887764322 12222223347899988 588888888899
Q ss_pred EEEECCCccccceEEeeeccCCCCccEEE-------------------EEECCCCCeEEEE-----eCCCcEEEEeCCCC
Q 048012 276 RIWDVNEFKSQKQVIKPKLARPGRVAVTT-------------------CAWDCDGKCIAGG-----IGDGSIQVWNLKPG 331 (616)
Q Consensus 276 ~iwd~~~~~~~~~~~~~~~~~~~~~~v~~-------------------~~~sp~g~~l~~g-----~~dg~I~iwd~~~~ 331 (616)
++||+.+++..... ... .. .... +.|+|+++.++.+ ..+..|++||+.++
T Consensus 105 ~~~d~~~~~~~~~~-~~~---~~--~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g 178 (396)
T 3c5m_A 105 MKVDLETLEEQVIY-TVD---EE--WKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETG 178 (396)
T ss_dssp EEEETTTCCEEEEE-ECC---TT--EEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTC
T ss_pred EEEECCCCCcEEEE-ecc---cc--cCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCC
Confidence 99999876432221 111 00 1111 3578888877654 35678999999875
Q ss_pred CCCCCceeeecCCCCCeEEEEEcC-CCCeEEEEecC------CcEEEEeCCCCCCcceEecCCCCCCcceeEEECCCCCE
Q 048012 332 WGSRPDIHVEKGHSDDITALKFSS-DGRILLSRSFD------GSLKVWDLRKMKEPLKVFEDLPNNYAQTNVAFSPDEQL 404 (616)
Q Consensus 332 ~~~~~~~~~~~~h~~~V~~l~~sp-dg~~l~s~s~D------g~v~lwd~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~ 404 (616)
.. ..+..+...+..+.|+| ++..|+..+.+ ..|.+||+.... ...+........+..++|+|||++
T Consensus 179 ----~~-~~~~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~--~~~l~~~~~~~~~~~~~~spdg~~ 251 (396)
T 3c5m_A 179 ----EL-EVIHQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSN--VRKIKEHAEGESCTHEFWIPDGSA 251 (396)
T ss_dssp ----CE-EEEEEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCC--CEESSCCCTTEEEEEEEECTTSSC
T ss_pred ----cE-EeeccCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCc--eeEeeccCCCccccceEECCCCCE
Confidence 22 23335667799999999 88877776643 358888886432 222222211234778999999998
Q ss_pred EEEeeccccccCCCceEEEEeCCCCceEEEEecCCCCCeEEEEEcC-CCCcEEEEe
Q 048012 405 FLTGTSVERESTTGGLLCFYDREKLELVSRVGISPACSVVQCAWHP-KLNQIFATA 459 (616)
Q Consensus 405 l~~gs~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p-~~~~l~~~~ 459 (616)
|+.++... ....+.|++||+.+++........ . .. +.|+| ++..|+++.
T Consensus 252 l~~~~~~~--~~~~~~l~~~d~~~g~~~~l~~~~--~-~~-~~~s~~dg~~l~~~~ 301 (396)
T 3c5m_A 252 MAYVSYFK--GQTDRVIYKANPETLENEEVMVMP--P-CS-HLMSNFDGSLMVGDG 301 (396)
T ss_dssp EEEEEEET--TTCCEEEEEECTTTCCEEEEEECC--S-EE-EEEECSSSSEEEEEE
T ss_pred EEEEecCC--CCccceEEEEECCCCCeEEeeeCC--C-CC-CCccCCCCceEEEec
Confidence 88775210 011255999999988765443322 1 33 89999 998777654
No 180
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.64 E-value=1.8e-14 Score=159.81 Aligned_cols=242 Identities=13% Similarity=0.099 Sum_probs=152.2
Q ss_pred EEEEC--CCCCE-EEEEEc-CCcEEEEeCC--C-CccccccceecCCC----CCCceEEEEecCCCCeEEEEeCC-----
Q 048012 154 ALAVD--HSGSR-VLSGSY-DYTVRMYDFQ--G-MNSRLQSFRQLEPS----EGHQVRNLSWSPTSDRFLCVTGS----- 217 (616)
Q Consensus 154 ~v~~s--p~g~~-lasgs~-Dg~i~iwd~~--~-~~~~~~~~~~~~~~----~~~~v~~l~~sp~g~~l~~~s~d----- 217 (616)
...|+ |||++ |+.++. +..|.+|++. + .. ...+... +...+..++|+|+|++|++++.+
T Consensus 81 ~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~-----~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~ 155 (662)
T 3azo_A 81 PWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAV-----PRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEG 155 (662)
T ss_dssp CEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCC-----CEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSS
T ss_pred cceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCC-----CEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCC
Confidence 45554 99998 776554 4566666665 2 21 1222221 34568899999999999998876
Q ss_pred -----CeEEEEECCC------CeeeeEeeCceeEeecccCC-CcccceEEEEEcCCCCCEEEEEeCC--------CCEEE
Q 048012 218 -----AQAKIYDRDG------LTLGEFVKGDMYIRDLKNTK-GHICGLTCGEWHPKTKETILTSSED--------GSLRI 277 (616)
Q Consensus 218 -----~~v~vwd~~~------~~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~p~~~~~l~s~s~D--------g~v~i 277 (616)
..|++|++.+ ..... +. .+...+..++|+|+++ .|+.++.+ ..|++
T Consensus 156 ~~~~~~~i~~~~~~~~~~~~~~~~~~-------------l~~~~~~~~~~~~~SpDG~-~la~~~~~~~~~~~~~~~i~~ 221 (662)
T 3azo_A 156 PSDVRRFLAAVPLDGSAAADRSAVRE-------------LSDDAHRFVTGPRLSPDGR-QAVWLAWDHPRMPWEGTELKT 221 (662)
T ss_dssp TTCEEEEEEEEETTSTTTTCGGGSEE-------------SSCSCSSEECCCEECTTSS-EEEEEEECTTCCTTTCEEEEE
T ss_pred CCCceeEEEEEECCCCccccCCceeE-------------EEecCCCcccCceECCCCC-EEEEEECCCCCCCCCCcEEEE
Confidence 5899999987 44321 23 4446778899999985 66666544 37999
Q ss_pred EECC-Ccc--ccceEEeeeccCCCCccEEEEEECCCCCeEEEEeCCC--cEEEEeCCCCCCCCCceeeecCCCCC-----
Q 048012 278 WDVN-EFK--SQKQVIKPKLARPGRVAVTTCAWDCDGKCIAGGIGDG--SIQVWNLKPGWGSRPDIHVEKGHSDD----- 347 (616)
Q Consensus 278 wd~~-~~~--~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~g~~dg--~I~iwd~~~~~~~~~~~~~~~~h~~~----- 347 (616)
||+. ++. ....+.. .+...+..++|+|+|++++++..+| .|++||+.++ ........+...
T Consensus 222 ~d~~~~g~~~~~~~l~~-----~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~----~~~~l~~~~~~~~~p~w 292 (662)
T 3azo_A 222 ARVTEDGRFADTRTLLG-----GPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATG----AATQLCRREEEFAGPLW 292 (662)
T ss_dssp EEECTTSCEEEEEEEEE-----ETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTC----CEEESSCCSSBSSCCCC
T ss_pred EEECCCCcccccEEeCC-----CCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCC----ceeecccccccccCccc
Confidence 9998 441 2222221 1223688999999999888888888 5666676554 222222223222
Q ss_pred ---eEEEEEcCCCCeEEEEecCCcEEEEeCCCCCCcceEecCCCCCCcceeEEECCCCCEEEE-eeccccccCCC--ceE
Q 048012 348 ---ITALKFSSDGRILLSRSFDGSLKVWDLRKMKEPLKVFEDLPNNYAQTNVAFSPDEQLFLT-GTSVERESTTG--GLL 421 (616)
Q Consensus 348 ---V~~l~~spdg~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~-gs~~~~~~~~d--g~i 421 (616)
+.+++|+++++++++++. +.++||.+......+..+..+ ...+..+ +++++..++. +++ .+ ..|
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~~~~~l~~~--~~~~~~~-~s~~~~~~~~~~~~------~~~~~~i 362 (662)
T 3azo_A 293 TPGMRWFAPLANGLIAVVHGK-GAAVLGILDPESGELVDAAGP--WTEWAAT-LTVSGTRAVGVAAS------PRTAYEV 362 (662)
T ss_dssp STTCCSEEECTTSCEEEEEBS-SSCEEEEEETTTTEEEECCSS--CCEEEEE-EEEETTEEEEEEEE------TTEEEEE
T ss_pred cccCceEeEeCCCEEEEEEEc-CccEEEEEECCCCcEEEecCC--CCeEEEE-EecCCCEEEEEEcC------CCCCCEE
Confidence 567999999999999998 999999443222224444332 2335555 1445544333 221 33 367
Q ss_pred EEEeCCCCceEE
Q 048012 422 CFYDREKLELVS 433 (616)
Q Consensus 422 ~iwd~~~~~~~~ 433 (616)
++||+.+++...
T Consensus 363 ~~~d~~~g~~~~ 374 (662)
T 3azo_A 363 VELDTVTGRART 374 (662)
T ss_dssp EEEETTTCCEEE
T ss_pred EEEECCCCceEE
Confidence 777887877544
No 181
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.64 E-value=2.6e-14 Score=159.36 Aligned_cols=285 Identities=11% Similarity=-0.002 Sum_probs=180.2
Q ss_pred CCCCEEEEEEcCC---cEEEEeC--CCCcc-ccccceecCCCCCCceEEEEecCCCCeEEEEe-----CCCeEEEEECCC
Q 048012 159 HSGSRVLSGSYDY---TVRMYDF--QGMNS-RLQSFRQLEPSEGHQVRNLSWSPTSDRFLCVT-----GSAQAKIYDRDG 227 (616)
Q Consensus 159 p~g~~lasgs~Dg---~i~iwd~--~~~~~-~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~s-----~d~~v~vwd~~~ 227 (616)
|+|.+++....++ .-.||-. .++.. .+.....+...+...+..++|||||++|+.+. .+..|++||+.+
T Consensus 77 ~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~t 156 (695)
T 2bkl_A 77 RRNGRFFYVRTHKDKEKAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDS 156 (695)
T ss_dssp EETTEEEEEEECTTCSSCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTT
T ss_pred EECCEEEEEEEcCCCeEEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCC
Confidence 7888888777654 3445543 33211 11111112223334689999999999988543 346899999998
Q ss_pred CeeeeEeeCceeEeecccCCCcccce--EEEEEcCCCCCEEEEEeCCCC-------------EEEEECCCccccceEEee
Q 048012 228 LTLGEFVKGDMYIRDLKNTKGHICGL--TCGEWHPKTKETILTSSEDGS-------------LRIWDVNEFKSQKQVIKP 292 (616)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~h~~~v--~~~~~~p~~~~~l~s~s~Dg~-------------v~iwd~~~~~~~~~~~~~ 292 (616)
++... ..+...+ ..++|+|++. .|+.++.|.. |++|++.+......++..
T Consensus 157 g~~~~--------------~~~~~~~~~~~~~wspDg~-~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~ 221 (695)
T 2bkl_A 157 GEWSK--------------VDVIEGGKYATPKWTPDSK-GFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHE 221 (695)
T ss_dssp CCBCS--------------SCCBSCCTTCCCEECTTSS-EEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEEC
T ss_pred CCCcC--------------CcccCcccccceEEecCCC-EEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEe
Confidence 76410 1121222 6789999985 7777777776 999999876543333221
Q ss_pred eccCCCCccEEEEEECCCCCeEEEEeCCC----cEEEEeCCCCCCCCCceeeecCCCCCeEEEEEcCCCCeEEEEe---c
Q 048012 293 KLARPGRVAVTTCAWDCDGKCIAGGIGDG----SIQVWNLKPGWGSRPDIHVEKGHSDDITALKFSSDGRILLSRS---F 365 (616)
Q Consensus 293 ~~~~~~~~~v~~~~~sp~g~~l~~g~~dg----~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s---~ 365 (616)
. ..+...+..+.|+|+|++|+.++.++ .|++|+..++ ....+..+...+....| ++|.++++.. .
T Consensus 222 ~--~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~-----~~~~l~~~~~~~~~~~~-~~g~l~~~s~~~~~ 293 (695)
T 2bkl_A 222 R--TGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEK-----DFRLLVKGVGAKYEVHA-WKDRFYVLTDEGAP 293 (695)
T ss_dssp C--CCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCS-----SCEEEEECSSCCEEEEE-ETTEEEEEECTTCT
T ss_pred c--CCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCC-----ceEEeecCCCceEEEEe-cCCcEEEEECCCCC
Confidence 1 22334688999999999998887666 6777765443 23344455556667767 5666444443 2
Q ss_pred CCcEEEEeCCCCCC-cceEecCCCCCCcceeEEECCCCCEEEEeeccccccCCCceEEEEeCC-CCceEEEEecCCCCCe
Q 048012 366 DGSLKVWDLRKMKE-PLKVFEDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDRE-KLELVSRVGISPACSV 443 (616)
Q Consensus 366 Dg~v~lwd~~~~~~-~~~~~~~~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~-~~~~~~~~~~~~~~~v 443 (616)
++.|.+||+.+... ....+........+..++|+ ++.++++.. .++..+||.+. +++.+..+.....+.|
T Consensus 294 ~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~-------~dg~~~l~~~~~~g~~~~~l~~~~~~~v 365 (695)
T 2bkl_A 294 RQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYL-------KDATSEVRVATLKGKPVRTVQLPGVGAA 365 (695)
T ss_dssp TCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEE-------ETTEEEEEEEETTCCEEEECCCSSSSEE
T ss_pred CCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEE-------ECCEEEEEEEeCCCCeeEEecCCCCeEE
Confidence 57899999976532 11233222223457788888 677777777 67877777554 4666666665445667
Q ss_pred EEEEEcCCCCcEEEEeccCCCCceEEEeccc
Q 048012 444 VQCAWHPKLNQIFATAGDKSQGGTHILYDPR 474 (616)
Q Consensus 444 ~~~~~~p~~~~l~~~~~d~~~~~~~~v~~~~ 474 (616)
..+.++|++..|+.+..+......+.+|++.
T Consensus 366 ~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~ 396 (695)
T 2bkl_A 366 SNLMGLEDLDDAYYVFTSFTTPRQIYKTSVS 396 (695)
T ss_dssp CCCBSCTTCSEEEEEEEETTEEEEEEEEETT
T ss_pred EEeecCCCCCEEEEEEcCCCCCCEEEEEECC
Confidence 8889999988888666543334567777754
No 182
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.62 E-value=1.9e-13 Score=135.34 Aligned_cols=227 Identities=11% Similarity=0.044 Sum_probs=160.0
Q ss_pred CceEEEEecCCCC-eEEEEeCCCeEEEEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCE
Q 048012 197 HQVRNLSWSPTSD-RFLCVTGSAQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSL 275 (616)
Q Consensus 197 ~~v~~l~~sp~g~-~l~~~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v 275 (616)
....+++|+|+++ .+++...++.|.+|+..+. ...+ ..+...+.+++|++++ .++++...++.|
T Consensus 28 ~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~-~~~~-------------~~~~~~~~~l~~~~dg-~l~v~~~~~~~i 92 (296)
T 3e5z_A 28 TWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ-LSPE-------------MHPSHHQNGHCLNKQG-HLIACSHGLRRL 92 (296)
T ss_dssp SSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC-EEEE-------------ESSCSSEEEEEECTTC-CEEEEETTTTEE
T ss_pred ccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC-eEEE-------------ECCCCCcceeeECCCC-cEEEEecCCCeE
Confidence 3478999999998 6677778899999999876 4322 2345668899999987 477777677899
Q ss_pred EEEECCCccccceEEeeeccCCCCccEEEEEECCCCCeEEEE----e-------------CCCcEEEEeCCCCCCCCCce
Q 048012 276 RIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWDCDGKCIAGG----I-------------GDGSIQVWNLKPGWGSRPDI 338 (616)
Q Consensus 276 ~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~g----~-------------~dg~I~iwd~~~~~~~~~~~ 338 (616)
.+||..+++... +..... ......+..++++++|+++++. + ..+.|..|+.. + .+
T Consensus 93 ~~~d~~~g~~~~-~~~~~~-~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g-----~~ 164 (296)
T 3e5z_A 93 ERQREPGGEWES-IADSFE-GKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-G-----TL 164 (296)
T ss_dssp EEECSTTCCEEE-EECEET-TEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-S-----CE
T ss_pred EEEcCCCCcEEE-EeeccC-CCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-C-----CE
Confidence 999997654322 211111 0111146689999999988873 3 13456666654 2 23
Q ss_pred eeecCCCCCeEEEEEcCCCCeEEEEecCCcEEEEeCCCCCCc---ceEecCCCCCCcceeEEECCCCCEEEEeecccccc
Q 048012 339 HVEKGHSDDITALKFSSDGRILLSRSFDGSLKVWDLRKMKEP---LKVFEDLPNNYAQTNVAFSPDEQLFLTGTSVERES 415 (616)
Q Consensus 339 ~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~v~lwd~~~~~~~---~~~~~~~~~~~~v~~v~fspdg~~l~~gs~~~~~~ 415 (616)
..+..+......++|+|++++|++.+.++.|.+||+...... ...+ . .....+..++++++|+++++.
T Consensus 165 ~~~~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~-~-~~~~~p~~i~~d~~G~l~v~~------- 235 (296)
T 3e5z_A 165 SAPIRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHF-T-VEPGKTDGLRVDAGGLIWASA------- 235 (296)
T ss_dssp EEEECCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEE-C-CSSSCCCSEEEBTTSCEEEEE-------
T ss_pred EEeecCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEe-e-CCCCCCCeEEECCCCCEEEEc-------
Confidence 344556667899999999999977778899999999732222 2333 2 233447789999999876654
Q ss_pred CCCceEEEEeCCCCceEEEEecCCCCCeEEEEE-cCCCCcEEEEec
Q 048012 416 TTGGLLCFYDREKLELVSRVGISPACSVVQCAW-HPKLNQIFATAG 460 (616)
Q Consensus 416 ~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~-~p~~~~l~~~~~ 460 (616)
++.|.+||.. ++.+..+... .. +.+++| .|+++.|++++.
T Consensus 236 --~~~v~~~~~~-g~~~~~~~~~-~~-~~~~~f~~~d~~~L~v~t~ 276 (296)
T 3e5z_A 236 --GDGVHVLTPD-GDELGRVLTP-QT-TSNLCFGGPEGRTLYMTVS 276 (296)
T ss_dssp --TTEEEEECTT-SCEEEEEECS-SC-CCEEEEESTTSCEEEEEET
T ss_pred --CCeEEEECCC-CCEEEEEECC-CC-ceeEEEECCCCCEEEEEcC
Confidence 3679999986 7888877653 34 889999 588888888875
No 183
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.62 E-value=8.7e-14 Score=135.62 Aligned_cols=242 Identities=8% Similarity=0.004 Sum_probs=165.9
Q ss_pred cEEEEEECCCCCEEE-EEEcCCcEEEEeCCCCccccccceecCCCCCCceEEEEecCCCCeEEEEeCCCeEEEEECCCCe
Q 048012 151 IVSALAVDHSGSRVL-SGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSDRFLCVTGSAQAKIYDRDGLT 229 (616)
Q Consensus 151 ~V~~v~~sp~g~~la-sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~s~d~~v~vwd~~~~~ 229 (616)
...+|+++++|++++ +...++.|.+|+..+... ..........+.+++++++|+.+++. .++.|.+|+..+..
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~-----~~~~~~~~~~p~~i~~~~~g~l~v~~-~~~~i~~~d~~~~~ 98 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGT-----TVLPFNGLYQPQGLAVDGAGTVYVTD-FNNRVVTLAAGSNN 98 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC----------EECCCCSCCSCCCEEECTTCCEEEEE-TTTEEEEECTTCSC
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCccc-----ceEeeCCcCCcceeEECCCCCEEEEc-CCCEEEEEeCCCce
Confidence 678999999999777 546788999998755321 11111223457889999998855544 48899999988765
Q ss_pred eeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEEEECCCccccceEEeeeccCCCCccEEEEEECC
Q 048012 230 LGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWDC 309 (616)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp 309 (616)
...+ .......+..+++.+++ .++++...++.|.+|+..+.... ... ..+...+.++++++
T Consensus 99 ~~~~------------~~~~~~~p~~i~~~~~g-~l~v~~~~~~~i~~~~~~~~~~~--~~~----~~~~~~p~~i~~~~ 159 (270)
T 1rwi_B 99 QTVL------------PFDGLNYPEGLAVDTQG-AVYVADRGNNRVVKLAAGSKTQT--VLP----FTGLNDPDGVAVDN 159 (270)
T ss_dssp CEEC------------CCCSCSSEEEEEECTTC-CEEEEEGGGTEEEEECTTCCSCE--ECC----CCSCCSCCCEEECT
T ss_pred Eeee------------ecCCcCCCcceEECCCC-CEEEEECCCCEEEEEECCCceeE--eec----cccCCCceeEEEeC
Confidence 3221 11223567899999977 57777777889999976543221 111 11112467899999
Q ss_pred CCCeEEEEeCCCcEEEEeCCCCCCCCCceeeecCCCCCeEEEEEcCCCCeEEEEecCCcEEEEeCCCCCCcceEecCCCC
Q 048012 310 DGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHSDDITALKFSSDGRILLSRSFDGSLKVWDLRKMKEPLKVFEDLPN 389 (616)
Q Consensus 310 ~g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~ 389 (616)
+|+++++...++.|.+||.... ........+...+.+|+++++|+++++...++.|.+||...... ... ....
T Consensus 160 ~g~l~v~~~~~~~i~~~~~~~~----~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~--~~~-~~~~ 232 (270)
T 1rwi_B 160 SGNVYVTDTDNNRVVKLEAESN----NQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTS--TVL-PFTG 232 (270)
T ss_dssp TCCEEEEEGGGTEEEEECTTTC----CEEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCC--EEC-CCCS
T ss_pred CCCEEEEECCCCEEEEEecCCC----ceEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcc--eee-ccCC
Confidence 9997777777889999998764 22222233336689999999998888777789999999865322 221 1122
Q ss_pred CCcceeEEECCCCCEEEEeeccccccCCCceEEEEeCCCCce
Q 048012 390 NYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREKLEL 431 (616)
Q Consensus 390 ~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~~~~ 431 (616)
...+.+++++++|+++++.. .++.|++|++...+.
T Consensus 233 ~~~p~~i~~~~~g~l~v~~~-------~~~~v~~~~~~~~~~ 267 (270)
T 1rwi_B 233 LNTPLAVAVDSDRTVYVADR-------GNDRVVKLTSLEHHH 267 (270)
T ss_dssp CSCEEEEEECTTCCEEEEEG-------GGTEEEEECCCGGGS
T ss_pred CCCceeEEECCCCCEEEEEC-------CCCEEEEEcCCCccc
Confidence 24588999999999777776 789999999876543
No 184
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.62 E-value=2e-13 Score=135.27 Aligned_cols=248 Identities=12% Similarity=0.070 Sum_probs=167.2
Q ss_pred EecCCcccEEEEEECCCCC-EEEEEEcCCcEEEEeCCCCccccccceecCCCCCCceEEEEecCCCCeEEEEeCCCeEEE
Q 048012 144 VLKGHTKIVSALAVDHSGS-RVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSDRFLCVTGSAQAKI 222 (616)
Q Consensus 144 ~l~~H~~~V~~v~~sp~g~-~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~s~d~~v~v 222 (616)
.+..+.....+++|+|+|+ +++++..++.|.+|+..+. ...+. .....+.+++|+++|+++++...++.|.+
T Consensus 22 ~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~---~~~~~----~~~~~~~~l~~~~dg~l~v~~~~~~~i~~ 94 (296)
T 3e5z_A 22 RLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ---LSPEM----HPSHHQNGHCLNKQGHLIACSHGLRRLER 94 (296)
T ss_dssp EEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC---EEEEE----SSCSSEEEEEECTTCCEEEEETTTTEEEE
T ss_pred EEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC---eEEEE----CCCCCcceeeECCCCcEEEEecCCCeEEE
Confidence 4556677889999999998 7888888999999998764 22221 24456899999999998777667789999
Q ss_pred EECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeC-----------------CCCEEEEECCCccc
Q 048012 223 YDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSE-----------------DGSLRIWDVNEFKS 285 (616)
Q Consensus 223 wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~-----------------Dg~v~iwd~~~~~~ 285 (616)
||..++.+..+... ........++.++++|++ .++++.+. .+.|..++.. ..
T Consensus 95 ~d~~~g~~~~~~~~--------~~~~~~~~~~~i~~d~~G-~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~--g~ 163 (296)
T 3e5z_A 95 QREPGGEWESIADS--------FEGKKLNSPNDVCLAPDG-SLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD--GT 163 (296)
T ss_dssp ECSTTCCEEEEECE--------ETTEECCCCCCEEECTTS-CEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT--SC
T ss_pred EcCCCCcEEEEeec--------cCCCCCCCCCCEEECCCC-CEEEECCccccccccccccccccCCCcEEEEECCC--CC
Confidence 99966554332110 001122356789999987 57776321 2345555443 22
Q ss_pred cceEEeeeccCCCCccEEEEEECCCCCeEEEEeCCCcEEEEeCC-CCCCCC-CceeeecCCCCCeEEEEEcCCCCeEEEE
Q 048012 286 QKQVIKPKLARPGRVAVTTCAWDCDGKCIAGGIGDGSIQVWNLK-PGWGSR-PDIHVEKGHSDDITALKFSSDGRILLSR 363 (616)
Q Consensus 286 ~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~g~~dg~I~iwd~~-~~~~~~-~~~~~~~~h~~~V~~l~~spdg~~l~s~ 363 (616)
...+. .+......++|+|+|++|++.+.++.|++|++. .+ .. .....+..+...+.+|+++++|+++++.
T Consensus 164 ~~~~~------~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g--~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~ 235 (296)
T 3e5z_A 164 LSAPI------RDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARG--ETEYQGVHFTVEPGKTDGLRVDAGGLIWASA 235 (296)
T ss_dssp EEEEE------CCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSS--CEEEEEEEECCSSSCCCSEEEBTTSCEEEEE
T ss_pred EEEee------cCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCC--cCcCCCeEeeCCCCCCCeEEECCCCCEEEEc
Confidence 22111 122257899999999999777788999999987 33 11 0012223455667899999999877766
Q ss_pred ecCCcEEEEeCCCCCCcceEecCCCCCCcceeEEE-CCCCCEEEEeeccccccCCCceEEEEeCCCCceE
Q 048012 364 SFDGSLKVWDLRKMKEPLKVFEDLPNNYAQTNVAF-SPDEQLFLTGTSVERESTTGGLLCFYDREKLELV 432 (616)
Q Consensus 364 s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~v~~v~f-spdg~~l~~gs~~~~~~~~dg~i~iwd~~~~~~~ 432 (616)
++.|.+||.. + ..+..+... .. +++++| +|+++.|++++ .+ .|.-++..+.++.
T Consensus 236 --~~~v~~~~~~-g-~~~~~~~~~--~~-~~~~~f~~~d~~~L~v~t-------~~-~l~~~~~~~~~~~ 290 (296)
T 3e5z_A 236 --GDGVHVLTPD-G-DELGRVLTP--QT-TSNLCFGGPEGRTLYMTV-------ST-EFWSIETNVRGLE 290 (296)
T ss_dssp --TTEEEEECTT-S-CEEEEEECS--SC-CCEEEEESTTSCEEEEEE-------TT-EEEEEECSCCBCC
T ss_pred --CCeEEEECCC-C-CEEEEEECC--CC-ceeEEEECCCCCEEEEEc-------CC-eEEEEEccccccc
Confidence 8899999986 3 334444332 22 889999 68999999887 44 5667777766543
No 185
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.61 E-value=3.1e-12 Score=137.53 Aligned_cols=314 Identities=14% Similarity=0.128 Sum_probs=198.9
Q ss_pred ccEEEEEECCCCCEEEEEEcCCcEEEEeCC--CCccccccceecCCCCCCceEEEEec----CCCCeEEEEeC-CCeEEE
Q 048012 150 KIVSALAVDHSGSRVLSGSYDYTVRMYDFQ--GMNSRLQSFRQLEPSEGHQVRNLSWS----PTSDRFLCVTG-SAQAKI 222 (616)
Q Consensus 150 ~~V~~v~~sp~g~~lasgs~Dg~i~iwd~~--~~~~~~~~~~~~~~~~~~~v~~l~~s----p~g~~l~~~s~-d~~v~v 222 (616)
..+..++|+|+|++|++++.|+.|.+||+. +.. ....+. .+.....++|+ |+|++++++.. +++|.|
T Consensus 197 ~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~----~v~~i~--~G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~V 270 (567)
T 1qks_A 197 YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPT----TVAEIK--IGSEARSIETSKMEGWEDKYAIAGAYWPPQYVI 270 (567)
T ss_dssp SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCC----EEEEEE--CCSEEEEEEECCSTTCTTTEEEEEEEETTEEEE
T ss_pred CCccceEECCCCCEEEEEcCCCeEEEEECCCCCCc----EeEEEe--cCCCCceeEEccccCCCCCEEEEEEccCCeEEE
Confidence 356799999999999999999999999985 321 122222 23447899999 69999888765 599999
Q ss_pred EECCCCeeeeEeeCceeEeecccCCCccc-ceEEEEEcCCCCCEEEEEeCCCCEEEEECCCccccceEEeeeccCCCCcc
Q 048012 223 YDRDGLTLGEFVKGDMYIRDLKNTKGHIC-GLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPGRVA 301 (616)
Q Consensus 223 wd~~~~~~~~~~~~~~~~~~~~~~~~h~~-~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~ 301 (616)
+|..+.++......... .......|.. .+..+.+++++..++++...+|.|.++|....+......... . ..
T Consensus 271 iD~~t~~~~~~i~~~~~--~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~----~-~~ 343 (567)
T 1qks_A 271 MDGETLEPKKIQSTRGM--TYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISA----E-RF 343 (567)
T ss_dssp EETTTCCEEEEEECCEE--CTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEEC----C-SS
T ss_pred EECCCCcEEEEEecccc--ccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeeec----c-cc
Confidence 99887665433221100 0000011222 577888888877677777788999999987654222111111 1 14
Q ss_pred EEEEEECCCCCeEEEEe-CCCcEEEEeCCCCCCCCCceeeec-----CCCCCeEEEEEcCCCC-eEEEEe-cCCcEEEEe
Q 048012 302 VTTCAWDCDGKCIAGGI-GDGSIQVWNLKPGWGSRPDIHVEK-----GHSDDITALKFSSDGR-ILLSRS-FDGSLKVWD 373 (616)
Q Consensus 302 v~~~~~sp~g~~l~~g~-~dg~I~iwd~~~~~~~~~~~~~~~-----~h~~~V~~l~~spdg~-~l~s~s-~Dg~v~lwd 373 (616)
...+.|+|+|++|+++. .++.|.++|+.++ +.+.... .|.+.-..+ ++|++. ++++.. .+++|.++|
T Consensus 344 ~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~----kl~~~i~vgg~~Phpg~g~~~-~~p~~g~v~~t~~~g~~~Vsvid 418 (567)
T 1qks_A 344 LHDGGLDGSHRYFITAANARNKLVVIDTKEG----KLVAIEDTGGQTPHPGRGANF-VHPTFGPVWATSHMGDDSVALIG 418 (567)
T ss_dssp EEEEEECTTSCEEEEEEGGGTEEEEEETTTT----EEEEEEECSSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEE
T ss_pred ccCceECCCCCEEEEEeCCCCeEEEEECCCC----cEEEEEeccCcCCCCccceee-ECCCCCcEEEeCCCCCCeEEEec
Confidence 67889999999987766 5789999999976 3333322 243322222 578744 444543 468999999
Q ss_pred CCCCC------CcceEecCCCCCCcceeEEECCCCCEEEEeeccccccCCCceEEEEeCCCC-----ce-EEEEec----
Q 048012 374 LRKMK------EPLKVFEDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREKL-----EL-VSRVGI---- 437 (616)
Q Consensus 374 ~~~~~------~~~~~~~~~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~~-----~~-~~~~~~---- 437 (616)
....+ ..++.+.... ..-..+.++|++++|.+...........+.|.+||+.+. .. +..+.+
T Consensus 419 ~~~~~~~~~~~kvv~~i~~~g--~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~ 496 (567)
T 1qks_A 419 TDPEGHPDNAWKILDSFPALG--GGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWA 496 (567)
T ss_dssp CCTTTCTTTBTSEEEEEECSC--SCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHH
T ss_pred CCCCCCccccCEEEEEEecCC--CCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcccccccCCCcEEecccccc
Confidence 88632 2234443321 223457899999999987621000001358999999877 22 234432
Q ss_pred ---CCCCCeEEEEEcCCCCcEEEEeccC-CCCceEEEecccCCCCCcEEEEec
Q 048012 438 ---SPACSVVQCAWHPKLNQIFATAGDK-SQGGTHILYDPRLSERGALVCVAR 486 (616)
Q Consensus 438 ---~~~~~v~~~~~~p~~~~l~~~~~d~-~~~~~~~v~~~~~s~~g~~l~s~~ 486 (616)
.....+..+.|+++|.+++++...+ ...+.+.|+|.. .++++.+..
T Consensus 497 ~~~~~~~~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v~D~~---t~~~~~~i~ 546 (567)
T 1qks_A 497 GITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDK---TLELKHVIK 546 (567)
T ss_dssp TCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETT---TTEEEEEEC
T ss_pred ccCCCCcceEeeeECCCCCEEEEEeecCCCCCCcEEEEECC---CceEEEEeC
Confidence 1235688999999999998886521 125677787765 255544443
No 186
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.61 E-value=1.9e-12 Score=139.22 Aligned_cols=270 Identities=11% Similarity=-0.001 Sum_probs=179.0
Q ss_pred CCCCCEEEEEEcCCcEEEEeCCCCccccccceecCCCCCCceEEEEecCCCCeEEEEeCCCeEEEEECC--CCeeeeEee
Q 048012 158 DHSGSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSDRFLCVTGSAQAKIYDRD--GLTLGEFVK 235 (616)
Q Consensus 158 sp~g~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~s~d~~v~vwd~~--~~~~~~~~~ 235 (616)
++.+.++++...++.|.++|..+... . ..+. .+..+..+.|+|+|++|++++.++.|.+||+. +.++...
T Consensus 164 d~~~~~~V~~~~~~~V~viD~~t~~v-~---~~i~--~g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~-- 235 (567)
T 1qks_A 164 DLENLFSVTLRDAGQIALIDGSTYEI-K---TVLD--TGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAE-- 235 (567)
T ss_dssp CGGGEEEEEETTTTEEEEEETTTCCE-E---EEEE--CSSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEE--
T ss_pred CCCceEEEEeCCCCeEEEEECCCCeE-E---EEEe--CCCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEE--
Confidence 34556777788899999999887531 1 1111 23457799999999999999999999999995 4332111
Q ss_pred CceeEeecccCCCcccceEEEEEc----CCCCCEEEEEeCCCCEEEEECCCccccceEEeeeccCC----C-CccEEEEE
Q 048012 236 GDMYIRDLKNTKGHICGLTCGEWH----PKTKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARP----G-RVAVTTCA 306 (616)
Q Consensus 236 ~~~~~~~~~~~~~h~~~v~~~~~~----p~~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~----~-~~~v~~~~ 306 (616)
+.. ......++|+ |+++.++++...+++|.|+|..+.+.+..+........ + ...+..+.
T Consensus 236 ----------i~~-G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~ 304 (567)
T 1qks_A 236 ----------IKI-GSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAIL 304 (567)
T ss_dssp ----------EEC-CSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEE
T ss_pred ----------Eec-CCCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEE
Confidence 111 1234688999 68876666677789999999988776655443211000 1 12577888
Q ss_pred ECCCCCeE-EEEeCCCcEEEEeCCCCCCCCCceeeecCCCCCeEEEEEcCCCCeEEEEe-cCCcEEEEeCCCCCCcceEe
Q 048012 307 WDCDGKCI-AGGIGDGSIQVWNLKPGWGSRPDIHVEKGHSDDITALKFSSDGRILLSRS-FDGSLKVWDLRKMKEPLKVF 384 (616)
Q Consensus 307 ~sp~g~~l-~~g~~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s-~Dg~v~lwd~~~~~~~~~~~ 384 (616)
.++++..+ +....+|.|.++|..... ...+..+ ........+.|+|+|++|+++. .+++|.++|+.+.+ .+..+
T Consensus 305 ~s~~~~~~vv~~~~~g~v~~vd~~~~~--~~~v~~i-~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~k-l~~~i 380 (567)
T 1qks_A 305 ASHYRPEFIVNVKETGKILLVDYTDLN--NLKTTEI-SAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGK-LVAIE 380 (567)
T ss_dssp ECSSSSEEEEEETTTTEEEEEETTCSS--EEEEEEE-ECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTE-EEEEE
T ss_pred EcCCCCEEEEEecCCCeEEEEecCCCc--cceeeee-eccccccCceECCCCCEEEEEeCCCCeEEEEECCCCc-EEEEE
Confidence 88876654 444567999999987531 1112222 2334577899999999987766 57899999999754 33333
Q ss_pred cC---CCCCCcceeEE-ECCCCCE-EEEeeccccccCCCceEEEEeCCC-------CceEEEEecCCCCCeEEEEEcCCC
Q 048012 385 ED---LPNNYAQTNVA-FSPDEQL-FLTGTSVERESTTGGLLCFYDREK-------LELVSRVGISPACSVVQCAWHPKL 452 (616)
Q Consensus 385 ~~---~~~~~~v~~v~-fspdg~~-l~~gs~~~~~~~~dg~i~iwd~~~-------~~~~~~~~~~~~~~v~~~~~~p~~ 452 (616)
.. .++. -..+. ++|++.. ++++.. .++.|.++|..+ .+.++++.... ..-..+..||++
T Consensus 381 ~vgg~~Php--g~g~~~~~p~~g~v~~t~~~------g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g-~g~~~i~~~p~~ 451 (567)
T 1qks_A 381 DTGGQTPHP--GRGANFVHPTFGPVWATSHM------GDDSVALIGTDPEGHPDNAWKILDSFPALG-GGSLFIKTHPNS 451 (567)
T ss_dssp ECSSSSBCC--TTCEEEEETTTEEEEEEEBS------SSSEEEEEECCTTTCTTTBTSEEEEEECSC-SCCCCEECCTTC
T ss_pred eccCcCCCC--ccceeeECCCCCcEEEeCCC------CCCeEEEecCCCCCCccccCEEEEEEecCC-CCCEEEEeCCCC
Confidence 22 1221 12233 5787544 444431 458999999988 78888887642 233557789999
Q ss_pred CcEEEEe
Q 048012 453 NQIFATA 459 (616)
Q Consensus 453 ~~l~~~~ 459 (616)
++|++..
T Consensus 452 ~~l~v~~ 458 (567)
T 1qks_A 452 QYLYVDA 458 (567)
T ss_dssp SEEEEEC
T ss_pred CeEEEec
Confidence 9999876
No 187
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.60 E-value=1.2e-12 Score=131.98 Aligned_cols=241 Identities=12% Similarity=0.093 Sum_probs=159.5
Q ss_pred EEecCCcccEEEEEECCCCCEEEEEEcCCcEEEEeCCCCccccccceecCCCCCCceEEEEecCCCCeEEEEeCC----C
Q 048012 143 IVLKGHTKIVSALAVDHSGSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSDRFLCVTGS----A 218 (616)
Q Consensus 143 ~~l~~H~~~V~~v~~sp~g~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~s~d----~ 218 (616)
..+..|...+.+++|+++|++++++..++.|.+||..+... ..+.......+.+++|+++|+++++...+ +
T Consensus 38 ~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~-----~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~ 112 (333)
T 2dg1_A 38 LEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEI-----KRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTG 112 (333)
T ss_dssp EEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCE-----EEEEECSSSSEEEEEECTTSCEEEEECTTSSSCC
T ss_pred EEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcE-----EEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCc
Confidence 35667777889999999999888888899999999876421 11111234569999999999877766665 6
Q ss_pred eEEEEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeC------CCCEEEEECCCccccceEEee
Q 048012 219 QAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSE------DGSLRIWDVNEFKSQKQVIKP 292 (616)
Q Consensus 219 ~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~------Dg~v~iwd~~~~~~~~~~~~~ 292 (616)
.|.+||..+..+..+.. ...+...+.+++++|++ .++++... .+.|..||....+. ..+...
T Consensus 113 ~i~~~d~~~~~~~~~~~----------~~~~~~~~~~i~~d~~g-~l~v~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~ 180 (333)
T 2dg1_A 113 GIFAATENGDNLQDIIE----------DLSTAYCIDDMVFDSKG-GFYFTDFRGYSTNPLGGVYYVSPDFRTV-TPIIQN 180 (333)
T ss_dssp EEEEECTTSCSCEEEEC----------SSSSCCCEEEEEECTTS-CEEEEECCCBTTBCCEEEEEECTTSCCE-EEEEEE
T ss_pred eEEEEeCCCCEEEEEEc----------cCccCCcccceEECCCC-CEEEEeccccccCCCceEEEEeCCCCEE-EEeecC
Confidence 89999988776432211 01234578999999987 46666553 24455555543222 222111
Q ss_pred eccCCCCccEEEEEECCCCCeEEE-EeCCCcEEEEeCCCCCCCCCc-----eeeecCCCCCeEEEEEcCCCCeEEEEecC
Q 048012 293 KLARPGRVAVTTCAWDCDGKCIAG-GIGDGSIQVWNLKPGWGSRPD-----IHVEKGHSDDITALKFSSDGRILLSRSFD 366 (616)
Q Consensus 293 ~~~~~~~~~v~~~~~sp~g~~l~~-g~~dg~I~iwd~~~~~~~~~~-----~~~~~~h~~~V~~l~~spdg~~l~s~s~D 366 (616)
. ..+..++|+++|+.|++ ...++.|++||+......... ...+.++ ..+..|+++++|+++++...+
T Consensus 181 -~-----~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~-~~~~~i~~d~~G~l~v~~~~~ 253 (333)
T 2dg1_A 181 -I-----SVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGH-EGPDSCCIDSDDNLYVAMYGQ 253 (333)
T ss_dssp -E-----SSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSS-SEEEEEEEBTTCCEEEEEETT
T ss_pred -C-----CcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCC-CCCCceEECCCCCEEEEEcCC
Confidence 1 14788999999986654 456789999998642000000 0111222 467889999999988888888
Q ss_pred CcEEEEeCCCCCCcceEecCCCC----CCcceeEEECCCCCEEEEee
Q 048012 367 GSLKVWDLRKMKEPLKVFEDLPN----NYAQTNVAFSPDEQLFLTGT 409 (616)
Q Consensus 367 g~v~lwd~~~~~~~~~~~~~~~~----~~~v~~v~fspdg~~l~~gs 409 (616)
+.|.+||.. + ..+..+..... ...+.+++|+++++.|++++
T Consensus 254 ~~v~~~d~~-g-~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~ 298 (333)
T 2dg1_A 254 GRVLVFNKR-G-YPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICS 298 (333)
T ss_dssp TEEEEECTT-S-CEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEE
T ss_pred CEEEEECCC-C-CEEEEEEcCCCccccccCcceEEECCCCCEEEEEe
Confidence 999999984 3 33444432211 11488999999988777666
No 188
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.59 E-value=4.2e-13 Score=150.01 Aligned_cols=254 Identities=11% Similarity=0.035 Sum_probs=166.9
Q ss_pred CCcccEEEEEECCCCCEEEEEEcCC-----cEEEEeCCCCccccccceecCCCCCCceEEEEecCCCCeEEEEeCCCe--
Q 048012 147 GHTKIVSALAVDHSGSRVLSGSYDY-----TVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSDRFLCVTGSAQ-- 219 (616)
Q Consensus 147 ~H~~~V~~v~~sp~g~~lasgs~Dg-----~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~s~d~~-- 219 (616)
+|+..+..++|||||++||.++.++ .|++||+.++....... ....+..++|+|||+.|+.++.++.
T Consensus 122 ~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~------~~~~~~~~~wspDg~~l~~~~~~~~~~ 195 (710)
T 2xdw_A 122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVL------ERVKFSCMAWTHDGKGMFYNAYPQQDG 195 (710)
T ss_dssp TSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEE------EEECSCCEEECTTSSEEEEEECCCCSS
T ss_pred CCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccc------cCcccceEEEEeCCCEEEEEEECCccc
Confidence 4556789999999999999776543 89999998764221111 1112567999999999999987765
Q ss_pred --------------EEEEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeC-----CCCEEEEEC
Q 048012 220 --------------AKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSE-----DGSLRIWDV 280 (616)
Q Consensus 220 --------------v~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~-----Dg~v~iwd~ 280 (616)
|++|++.+...... .+.....|...+..+.|+|+++ +|+.++. +..|++||+
T Consensus 196 ~~~~~~~~~~~~~~v~~~~l~t~~~~~~--------~v~~~~~~~~~~~~~~~SpDg~-~l~~~~~~~~~~~~~l~~~d~ 266 (710)
T 2xdw_A 196 KSDGTETSTNLHQKLYYHVLGTDQSEDI--------LCAEFPDEPKWMGGAELSDDGR-YVLLSIREGCDPVNRLWYCDL 266 (710)
T ss_dssp CCSSSCCCCCCCCEEEEEETTSCGGGCE--------EEECCTTCTTCEEEEEECTTSC-EEEEEEECSSSSCCEEEEEEG
T ss_pred cccccccccCCCCEEEEEECCCCcccce--------EEeccCCCCeEEEEEEEcCCCC-EEEEEEEccCCCccEEEEEEC
Confidence 99999986542100 0111233555678899999986 5554443 568999999
Q ss_pred CC------cc-ccceEEeeeccCCCCccEEEEEECCCCCeEEEEeCC----CcEEEEeCCCCCCCCCceeeecCCCC--C
Q 048012 281 NE------FK-SQKQVIKPKLARPGRVAVTTCAWDCDGKCIAGGIGD----GSIQVWNLKPGWGSRPDIHVEKGHSD--D 347 (616)
Q Consensus 281 ~~------~~-~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~g~~d----g~I~iwd~~~~~~~~~~~~~~~~h~~--~ 347 (616)
.+ +. ....+.. +...+.. .|+++|+.|+..+.. +.|.+||+.++ .......+..|.. .
T Consensus 267 ~~~~~~~~~~~~~~~l~~------~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~--~~~~~~~l~~~~~~~~ 337 (710)
T 2xdw_A 267 QQESNGITGILKWVKLID------NFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDP--EESKWKVLVPEHEKDV 337 (710)
T ss_dssp GGSSSSSCSSCCCEEEEC------SSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSC--CGGGCEEEECCCSSCE
T ss_pred cccccccCCccceEEeeC------CCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCC--CcccceeccCCCCCCe
Confidence 75 32 1222221 1112333 478899888776653 35999999865 1112344445544 5
Q ss_pred eEEEEEcCCCCeEEEEecCCc--EEEEeCCCCCCcceEecCCCCCCcceeEEECCCCCEEEEeeccccccCCCceEEEEe
Q 048012 348 ITALKFSSDGRILLSRSFDGS--LKVWDLRKMKEPLKVFEDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYD 425 (616)
Q Consensus 348 V~~l~~spdg~~l~s~s~Dg~--v~lwd~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd 425 (616)
+..++|++++.++++...|+. |.+||+.+++ .+..+... ...+..++++|++..|+...+. ....+.|++||
T Consensus 338 ~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g~-~~~~l~~~--~~~v~~~~~s~d~~~l~~~~ss---~~~P~~i~~~d 411 (710)
T 2xdw_A 338 LEWVACVRSNFLVLCYLHDVKNTLQLHDLATGA-LLKIFPLE--VGSVVGYSGQKKDTEIFYQFTS---FLSPGIIYHCD 411 (710)
T ss_dssp EEEEEEETTTEEEEEEEETTEEEEEEEETTTCC-EEEEECCC--SSEEEEEECCTTCSEEEEEEEC---SSCCCEEEEEE
T ss_pred EEEEEEEcCCEEEEEEEECCEEEEEEEECCCCC-EEEecCCC--CceEEEEecCCCCCEEEEEEeC---CCCCCEEEEEE
Confidence 888999988888888888885 5566765443 33444432 4457889999999766644311 11568999999
Q ss_pred CCCCc
Q 048012 426 REKLE 430 (616)
Q Consensus 426 ~~~~~ 430 (616)
+.+++
T Consensus 412 ~~tg~ 416 (710)
T 2xdw_A 412 LTKEE 416 (710)
T ss_dssp TTSSS
T ss_pred CCCCc
Confidence 98877
No 189
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.58 E-value=2.3e-11 Score=120.11 Aligned_cols=275 Identities=8% Similarity=0.008 Sum_probs=183.5
Q ss_pred EEecCCcccEEEEEECCCCCEEEEEEcCCcEEEEeCCCCccccccceecCCCCCCceEEEEecCCCCeEEEEeCCCeEEE
Q 048012 143 IVLKGHTKIVSALAVDHSGSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSDRFLCVTGSAQAKI 222 (616)
Q Consensus 143 ~~l~~H~~~V~~v~~sp~g~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~s~d~~v~v 222 (616)
+.+......+.+|+++++|.++++...++.|.+|+.. .. ...+. .......+..+++++++..+++...++.|.+
T Consensus 13 ~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~--~~~~~--~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~ 87 (300)
T 2qc5_A 13 FNLSIPDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GR--IKEFE--VPTPDAKVMCLIVSSLGDIWFTENGANKIGK 87 (300)
T ss_dssp EECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SC--EEEEE--CSSTTCCEEEEEECTTSCEEEEETTTTEEEE
T ss_pred EecCCCCCCcceeeECCCCCEEEEcCCCCeEEEECCC-Cc--eEEEE--CCCCCCcceeEEECCCCCEEEEecCCCeEEE
Confidence 3444556788999999999988877778999999976 22 11111 1223356899999999987776666789999
Q ss_pred EECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEEEECCCccccceEEeeeccCCCCccE
Q 048012 223 YDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPGRVAV 302 (616)
Q Consensus 223 wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v 302 (616)
||.. .....+. .......+.++++.+++ .++++...++.|..||.. ++.. .+... .....+
T Consensus 88 ~d~~-g~~~~~~-----------~~~~~~~~~~i~~~~~g-~l~v~~~~~~~i~~~~~~-g~~~-~~~~~----~~~~~~ 148 (300)
T 2qc5_A 88 LSKK-GGFTEYP-----------LPQPDSGPYGITEGLNG-DIWFTQLNGDRIGKLTAD-GTIY-EYDLP----NKGSYP 148 (300)
T ss_dssp ECTT-SCEEEEE-----------CSSTTCCEEEEEECSTT-CEEEEETTTTEEEEECTT-SCEE-EEECS----STTCCE
T ss_pred ECCC-CCeEEec-----------CCCCCCCCccceECCCC-CEEEEccCCCeEEEECCC-CCEE-EccCC----CCCCCc
Confidence 9988 4332221 11223568899999876 577777668889999986 3322 12111 122368
Q ss_pred EEEEECCCCCeEEEEeCCCcEEEEeCCCCCCCCCcee-eecCCCCCeEEEEEcCCCCeEEEEecCCcEEEEeCCCCCCcc
Q 048012 303 TTCAWDCDGKCIAGGIGDGSIQVWNLKPGWGSRPDIH-VEKGHSDDITALKFSSDGRILLSRSFDGSLKVWDLRKMKEPL 381 (616)
Q Consensus 303 ~~~~~sp~g~~l~~g~~dg~I~iwd~~~~~~~~~~~~-~~~~h~~~V~~l~~spdg~~l~s~s~Dg~v~lwd~~~~~~~~ 381 (616)
.+++++++|+++++...++.|..||. .+ .... ....+...+.+|++.++|+++++....+.|.+||.. +. .
T Consensus 149 ~~i~~d~~g~l~v~~~~~~~i~~~~~-~g----~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~-g~--~ 220 (300)
T 2qc5_A 149 AFITLGSDNALWFTENQNNSIGRITN-TG----KLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITTT-GE--I 220 (300)
T ss_dssp EEEEECTTSSEEEEETTTTEEEEECT-TC----CEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECTT-CC--E
T ss_pred eeEEECCCCCEEEEecCCCeEEEECC-CC----cEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcCC-Cc--E
Confidence 89999999997777666789999998 43 1222 222344568999999999887777777889999983 32 2
Q ss_pred eEecCCCCCCcceeEEECCCCCEEEEeeccccccCCCceEEEEeCCCCceEEEEecC-CCCCeEEEEEcCCCCcEEEEe
Q 048012 382 KVFEDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREKLELVSRVGIS-PACSVVQCAWHPKLNQIFATA 459 (616)
Q Consensus 382 ~~~~~~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~v~~~~~~p~~~~l~~~~ 459 (616)
..+........+.+++++++|+++++.. .++.|..||. +++.. .+... ....+.++++.++++ |+++.
T Consensus 221 ~~~~~~~~~~~~~~i~~d~~g~l~v~~~-------~~~~i~~~~~-~g~~~-~~~~~~~~~~~~~i~~~~~g~-l~v~~ 289 (300)
T 2qc5_A 221 SEYDIPTPNARPHAITAGKNSEIWFTEW-------GANQIGRITN-DNTIQ-EYQLQTENAEPHGITFGKDGS-VWFAL 289 (300)
T ss_dssp EEEECSSTTCCEEEEEECSTTCEEEEET-------TTTEEEEECT-TSCEE-EEECCSTTCCCCCEEECTTSC-EEEEC
T ss_pred EEEECCCCCCCceEEEECCCCCEEEecc-------CCCeEEEECC-CCcEE-EEECCccCCccceeEeCCCCC-EEEEc
Confidence 2221112234578999999999777665 5688999998 45433 33322 234567777777765 44443
No 190
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.57 E-value=4e-13 Score=136.11 Aligned_cols=211 Identities=12% Similarity=0.195 Sum_probs=141.6
Q ss_pred ccEEEEEECCCCCEEEEEEcC---C--cEEEEeCCCCccccccceecCCCCCCceEEEEecCCCCeEEEEeCC-------
Q 048012 150 KIVSALAVDHSGSRVLSGSYD---Y--TVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSDRFLCVTGS------- 217 (616)
Q Consensus 150 ~~V~~v~~sp~g~~lasgs~D---g--~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~s~d------- 217 (616)
..+.+++|+|+|++||..+.+ + .|.+|++.++.. ..+.... . +..+.|+|+|+.|++++.+
T Consensus 59 ~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~-----~~l~~~~-~-~~~~~wspdg~~l~~~~~~~~~~~~~ 131 (347)
T 2gop_A 59 ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSS-----KKILEAK-N-IRSLEWNEDSRKLLIVGFKRREDEDF 131 (347)
T ss_dssp ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEE-----EEEEEES-E-EEEEEECTTSSEEEEEEECCCC----
T ss_pred ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCce-----EEEEcCC-C-ccceeECCCCCEEEEEEccCCCcCCc
Confidence 468889999999999988764 3 377778776421 1121112 2 8999999999999888642
Q ss_pred --------------------CeEEEEECCCCee-eeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCC---
Q 048012 218 --------------------AQAKIYDRDGLTL-GEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDG--- 273 (616)
Q Consensus 218 --------------------~~v~vwd~~~~~~-~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg--- 273 (616)
..|.+|++.+++. ..+ .. . .+..+.|+|++ +++++..+.
T Consensus 132 ~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l-------------~~-~-~~~~~~~spdg--~~~~~~~~~~~~ 194 (347)
T 2gop_A 132 IFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEF-------------EK-P-RFSSGIWHRDK--IVVNVPHREIIP 194 (347)
T ss_dssp -----CCCC---------CEEEEEEEETTTTEEEEEE-------------EE-E-TTCEEEEETTE--EEEEEECCCSSC
T ss_pred EEEcccceeecCcccccCccceEEEEECCCCeEEeee-------------cC-C-CcccccCCCCe--EEEEEecccccc
Confidence 5788899887764 222 11 2 57788999987 777776542
Q ss_pred ----CEEEEECCCccccceEEeeeccCCCCccEEEEEECCCCCeEEEEeCC--------CcEEEEeCCCCCCCCCceeee
Q 048012 274 ----SLRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWDCDGKCIAGGIGD--------GSIQVWNLKPGWGSRPDIHVE 341 (616)
Q Consensus 274 ----~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~g~~d--------g~I~iwd~~~~~~~~~~~~~~ 341 (616)
...||.+.++ ....+... ..+..+ +|+|++|+.++.+ ..|++|| ++ ......
T Consensus 195 ~~~~~~~l~~~d~~-~~~~l~~~-------~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~----~~~~l~ 258 (347)
T 2gop_A 195 QYFKFWDIYIWEDG-KEEKMFEK-------VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GK----EVMGIL 258 (347)
T ss_dssp CSSCCEEEEEEETT-EEEEEEEE-------ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SS----CEEESS
T ss_pred cccccccEEEeCCC-ceEEeccC-------cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CC----ceEecc
Confidence 4455555432 22222211 234444 8999998887754 3688888 33 234444
Q ss_pred cCCCCCeEE-EEEcCCCCeEEEEecCCcEEEEeCCCCCCcceEecCCCCCCcceeEEECCCCCEEEEee
Q 048012 342 KGHSDDITA-LKFSSDGRILLSRSFDGSLKVWDLRKMKEPLKVFEDLPNNYAQTNVAFSPDEQLFLTGT 409 (616)
Q Consensus 342 ~~h~~~V~~-l~~spdg~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~gs 409 (616)
..|...+.. +.|+ |+ ++++++.++.++|| +.+ +....... ....|.+++|+| .++++++
T Consensus 259 ~~~~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~-g~~~~~~~---~~~~v~~~~~s~--~~~~~~~ 318 (347)
T 2gop_A 259 DEVDRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IWD-GEIKPIAK---GRHWIMGFDVDE--IVVYLKE 318 (347)
T ss_dssp TTCCSEEEEEEEET-TE-EEEEEEETTEEEEE-EES-SSEEEEEC---SSSEEEEEEESS--SEEEEEE
T ss_pred ccCCcccCCccEEc-Cc-EEEEEecCCcEEEE-EcC-CceEEEec---CCCeEEeeeeeC--cEEEEEc
Confidence 566777886 9999 88 99999999999999 873 33333332 245588999999 6777666
No 191
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.57 E-value=2.4e-13 Score=151.52 Aligned_cols=258 Identities=12% Similarity=0.014 Sum_probs=162.0
Q ss_pred CCcccEEEEEECCCCCEEE-----EEEcCCcEEEEeCCCCccccccceecCCCCCCceEEEEecCCCCeEEEEeCCCe--
Q 048012 147 GHTKIVSALAVDHSGSRVL-----SGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSDRFLCVTGSAQ-- 219 (616)
Q Consensus 147 ~H~~~V~~v~~sp~g~~la-----sgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~s~d~~-- 219 (616)
+|+..+.+++|||||++|| .|+.+.+|++||+.++..... ..........++|+|+|+.|+.++.+..
T Consensus 118 ~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~-----~~~~~~~~~~~~wspDg~~l~~~~~d~~~~ 192 (695)
T 2bkl_A 118 DGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKV-----DVIEGGKYATPKWTPDSKGFYYEWLPTDPS 192 (695)
T ss_dssp SSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSS-----CCBSCCTTCCCEECTTSSEEEEEECCCCTT
T ss_pred CCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCC-----cccCcccccceEEecCCCEEEEEEecCCCC
Confidence 5677899999999999998 444457899999987642100 0111111267999999999999988765
Q ss_pred -----------EEEEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCC-C--CEEEEECCCccc
Q 048012 220 -----------AKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSED-G--SLRIWDVNEFKS 285 (616)
Q Consensus 220 -----------v~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~D-g--~v~iwd~~~~~~ 285 (616)
|++|++.+..... ..+.....|...+..+.|+|+++.++++...+ + .|++||..++.
T Consensus 193 ~~~~~~~~~~~v~~~~l~t~~~~~--------~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~- 263 (695)
T 2bkl_A 193 IKVDERPGYTTIRYHTLGTEPSKD--------TVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKD- 263 (695)
T ss_dssp SCGGGGGGGCEEEEEETTSCGGGC--------EEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSS-
T ss_pred CccccCCCCCEEEEEECCCCchhc--------eEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCc-
Confidence 9999998654210 01222345666788999999996554444433 2 56666654332
Q ss_pred cceEEeeeccCCCCccEEEEEECCCCCeEEEEe---CCCcEEEEeCCCCCCCCCceeeecCC-CCCeEEEEEcCCCCeEE
Q 048012 286 QKQVIKPKLARPGRVAVTTCAWDCDGKCIAGGI---GDGSIQVWNLKPGWGSRPDIHVEKGH-SDDITALKFSSDGRILL 361 (616)
Q Consensus 286 ~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~g~---~dg~I~iwd~~~~~~~~~~~~~~~~h-~~~V~~l~~spdg~~l~ 361 (616)
...+.... ..+....| ++|.+++... .++.|.+||+.++. .......+..+ ...|..++|+ ++.+++
T Consensus 264 ~~~l~~~~------~~~~~~~~-~~g~l~~~s~~~~~~~~l~~~d~~~~~-~~~~~~l~~~~~~~~l~~~~~~-~~~lv~ 334 (695)
T 2bkl_A 264 FRLLVKGV------GAKYEVHA-WKDRFYVLTDEGAPRQRVFEVDPAKPA-RASWKEIVPEDSSASLLSVSIV-GGHLSL 334 (695)
T ss_dssp CEEEEECS------SCCEEEEE-ETTEEEEEECTTCTTCEEEEEBTTBCS-GGGCEEEECCCSSCEEEEEEEE-TTEEEE
T ss_pred eEEeecCC------CceEEEEe-cCCcEEEEECCCCCCCEEEEEeCCCCC-ccCCeEEecCCCCCeEEEEEEE-CCEEEE
Confidence 22222111 13445556 5666444443 25789999997651 00012233333 4458889998 778888
Q ss_pred EEecCCcEEEEeCCCCCCcceEecCCCCCCcceeEEECCCCCEEEEeeccccccCCCceEEEEeCCCCce
Q 048012 362 SRSFDGSLKVWDLRKMKEPLKVFEDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREKLEL 431 (616)
Q Consensus 362 s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~~~~ 431 (616)
+...|+..+||.+...+.....+. .+....+..++++|++..|+...+. ....+.|++||+.+++.
T Consensus 335 ~~~~dg~~~l~~~~~~g~~~~~l~-~~~~~~v~~~~~s~d~~~l~~~~ss---~~~P~~v~~~d~~~g~~ 400 (695)
T 2bkl_A 335 EYLKDATSEVRVATLKGKPVRTVQ-LPGVGAASNLMGLEDLDDAYYVFTS---FTTPRQIYKTSVSTGKS 400 (695)
T ss_dssp EEEETTEEEEEEEETTCCEEEECC-CSSSSEECCCBSCTTCSEEEEEEEE---TTEEEEEEEEETTTCCE
T ss_pred EEEECCEEEEEEEeCCCCeeEEec-CCCCeEEEEeecCCCCCEEEEEEcC---CCCCCEEEEEECCCCcE
Confidence 999999988886652222233332 2223457788999999877744311 11457899999998874
No 192
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.55 E-value=1e-12 Score=147.58 Aligned_cols=286 Identities=11% Similarity=0.019 Sum_probs=176.5
Q ss_pred CCCCEEEEEEcCCc---EEEEeCCCC---ccccccc---eecCCCCCCceEEEEecCCCCeEEEEeCC-----CeEEEEE
Q 048012 159 HSGSRVLSGSYDYT---VRMYDFQGM---NSRLQSF---RQLEPSEGHQVRNLSWSPTSDRFLCVTGS-----AQAKIYD 224 (616)
Q Consensus 159 p~g~~lasgs~Dg~---i~iwd~~~~---~~~~~~~---~~~~~~~~~~v~~l~~sp~g~~l~~~s~d-----~~v~vwd 224 (616)
|+|.+++....++. -.||-.... ......+ ..+...+...+..++|||||++|+.++.+ ..|++||
T Consensus 116 pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~d 195 (741)
T 1yr2_A 116 RRGASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVG 195 (741)
T ss_dssp EETTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEE
T ss_pred EECCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEE
Confidence 88998887766543 556654321 1111111 11112222368899999999999887654 4699999
Q ss_pred CCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCC--------------EEEEECCCccccceEE
Q 048012 225 RDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGS--------------LRIWDVNEFKSQKQVI 290 (616)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~--------------v~iwd~~~~~~~~~~~ 290 (616)
+.+++.... ..+...+..++|+|+ + .|+.++.++. |++|++.+......++
T Consensus 196 l~tg~~~~~-------------~~~~~~~~~~~wspD-~-~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv 260 (741)
T 1yr2_A 196 VADGKPLAD-------------ELKWVKFSGLAWLGN-D-ALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPV 260 (741)
T ss_dssp TTTCCEEEE-------------EEEEEESCCCEESTT-S-EEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEE
T ss_pred CCCCCCCCc-------------cCCCceeccEEEECC-C-EEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEE
Confidence 998765221 011112357899998 5 5666665544 8999997765433332
Q ss_pred eeeccCCCCccEEEEEECCCCCeEEEEeCCC-----cEEEEeCCCCCCCCCceeeecCCCCCeEEEEEcCCCCeEEEEec
Q 048012 291 KPKLARPGRVAVTTCAWDCDGKCIAGGIGDG-----SIQVWNLKPGWGSRPDIHVEKGHSDDITALKFSSDGRILLSRSF 365 (616)
Q Consensus 291 ~~~~~~~~~~~v~~~~~sp~g~~l~~g~~dg-----~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~ 365 (616)
... ..+...+..+.|+|+|++|+..+.++ .|++||+.++. ......+..+...+.... +|+|+.|+..+.
T Consensus 261 ~~~--~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~--~~~~~~l~~~~~~~~~~~-~~dg~~l~~~s~ 335 (741)
T 1yr2_A 261 FAT--PELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGK--IGPVTALIPDLKAQWDFV-DGVGDQLWFVSG 335 (741)
T ss_dssp ECC--TTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTE--ECCCEEEECSSSSCEEEE-EEETTEEEEEEC
T ss_pred ecc--CCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCC--CcccEEecCCCCceEEEE-eccCCEEEEEEC
Confidence 221 12222478999999999988877554 79999987641 011344445555555554 488998888876
Q ss_pred C----CcEEEEeCCCCC-CcceEecCCCCCCcceeEEECCCCCEEEEeeccccccCCCceEEEEeCC-CCceEEEEecCC
Q 048012 366 D----GSLKVWDLRKMK-EPLKVFEDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDRE-KLELVSRVGISP 439 (616)
Q Consensus 366 D----g~v~lwd~~~~~-~~~~~~~~~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~-~~~~~~~~~~~~ 439 (616)
+ +.|.+||+.+.. ....++.. ....+..++|+ ++.++++.. .++..+||.+. +++.+..+..+.
T Consensus 336 ~~~~~~~l~~~d~~~~~~~~~~l~~~--~~~~l~~~~~~-~~~lv~~~~-------~dg~~~l~~~~~~g~~~~~l~~~~ 405 (741)
T 1yr2_A 336 DGAPLKKIVRVDLSGSTPRFDTVVPE--SKDNLESVGIA-GNRLFASYI-------HDAKSQVLAFDLDGKPAGAVSLPG 405 (741)
T ss_dssp TTCTTCEEEEEECSSSSCEEEEEECC--CSSEEEEEEEE-BTEEEEEEE-------ETTEEEEEEEETTSCEEEECBCSS
T ss_pred CCCCCCEEEEEeCCCCccccEEEecC--CCCeEEEEEEE-CCEEEEEEE-------ECCEEEEEEEeCCCCceeeccCCC
Confidence 4 459999987642 22333322 22336677787 556666666 67766666543 466677776544
Q ss_pred CCCeEEEEEcCCCCcEEEEeccCCCCceEEEeccc
Q 048012 440 ACSVVQCAWHPKLNQIFATAGDKSQGGTHILYDPR 474 (616)
Q Consensus 440 ~~~v~~~~~~p~~~~l~~~~~d~~~~~~~~v~~~~ 474 (616)
.+.|..+.|+|++..|+.+..+......+.+|++.
T Consensus 406 ~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~ 440 (741)
T 1yr2_A 406 IGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPA 440 (741)
T ss_dssp SCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETT
T ss_pred CeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECC
Confidence 56788999999988887665543334566667653
No 193
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.54 E-value=2e-12 Score=125.84 Aligned_cols=239 Identities=6% Similarity=-0.004 Sum_probs=158.4
Q ss_pred ceEEEEecCCCCeEE-EEeCCCeEEEEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEE
Q 048012 198 QVRNLSWSPTSDRFL-CVTGSAQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLR 276 (616)
Q Consensus 198 ~v~~l~~sp~g~~l~-~~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~ 276 (616)
...+++++++|+.++ +.+.++.|.+|+..+.....+ ...+...+.++++.+++ .++++.. ++.|.
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~------------~~~~~~~p~~i~~~~~g-~l~v~~~-~~~i~ 90 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVL------------PFNGLYQPQGLAVDGAG-TVYVTDF-NNRVV 90 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----EEC------------CCCSCCSCCCEEECTTC-CEEEEET-TTEEE
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccceE------------eeCCcCCcceeEECCCC-CEEEEcC-CCEEE
Confidence 588999999998665 336788999998765442111 12233457889999987 4666655 88999
Q ss_pred EEECCCccccceEEeeeccCCCCccEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCCCCCceeeecCCCCCeEEEEEcCC
Q 048012 277 IWDVNEFKSQKQVIKPKLARPGRVAVTTCAWDCDGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHSDDITALKFSSD 356 (616)
Q Consensus 277 iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~spd 356 (616)
+||...... ..+. ......+..++++++|+++++...++.|.+|+..+. ............+.+|+++++
T Consensus 91 ~~d~~~~~~-~~~~-----~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~----~~~~~~~~~~~~p~~i~~~~~ 160 (270)
T 1rwi_B 91 TLAAGSNNQ-TVLP-----FDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSK----TQTVLPFTGLNDPDGVAVDNS 160 (270)
T ss_dssp EECTTCSCC-EECC-----CCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCC----SCEECCCCSCCSCCCEEECTT
T ss_pred EEeCCCceE-eeee-----cCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCc----eeEeeccccCCCceeEEEeCC
Confidence 999865322 1111 111236889999999998888777899999976543 222222233346789999999
Q ss_pred CCeEEEEecCCcEEEEeCCCCCCcceEecCCCCCCcceeEEECCCCCEEEEeeccccccCCCceEEEEeCCCCceEEEEe
Q 048012 357 GRILLSRSFDGSLKVWDLRKMKEPLKVFEDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREKLELVSRVG 436 (616)
Q Consensus 357 g~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~~~~~~~~~ 436 (616)
|+++++...++.|.+||...... ... .......+..++++++|.++++.. .++.|.+|+........ +.
T Consensus 161 g~l~v~~~~~~~i~~~~~~~~~~--~~~-~~~~~~~p~~i~~d~~g~l~v~~~-------~~~~v~~~~~~~~~~~~-~~ 229 (270)
T 1rwi_B 161 GNVYVTDTDNNRVVKLEAESNNQ--VVL-PFTDITAPWGIAVDEAGTVYVTEH-------NTNQVVKLLAGSTTSTV-LP 229 (270)
T ss_dssp CCEEEEEGGGTEEEEECTTTCCE--EEC-CCSSCCSEEEEEECTTCCEEEEET-------TTSCEEEECTTCSCCEE-CC
T ss_pred CCEEEEECCCCEEEEEecCCCce--Eee-cccCCCCceEEEECCCCCEEEEEC-------CCCcEEEEcCCCCccee-ec
Confidence 99888777788999999875432 111 111224478999999997777665 67899999987654432 22
Q ss_pred cCCCCCeEEEEEcCCCCcEEEEeccCCCCceEEEecccC
Q 048012 437 ISPACSVVQCAWHPKLNQIFATAGDKSQGGTHILYDPRL 475 (616)
Q Consensus 437 ~~~~~~v~~~~~~p~~~~l~~~~~d~~~~~~~~v~~~~~ 475 (616)
..+...+..++++++++.+++... ++.+.++++..
T Consensus 230 ~~~~~~p~~i~~~~~g~l~v~~~~----~~~v~~~~~~~ 264 (270)
T 1rwi_B 230 FTGLNTPLAVAVDSDRTVYVADRG----NDRVVKLTSLE 264 (270)
T ss_dssp CCSCSCEEEEEECTTCCEEEEEGG----GTEEEEECCCG
T ss_pred cCCCCCceeEEECCCCCEEEEECC----CCEEEEEcCCC
Confidence 222246888999998864444443 67788887654
No 194
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.52 E-value=6.5e-12 Score=126.36 Aligned_cols=259 Identities=8% Similarity=0.056 Sum_probs=167.7
Q ss_pred ccEEEEEECCCCCEEEEEEcCCcEEEEeCCCCccccccceecCCCCCCceEEEEecCCCCeEEEEe-CCCeEEEEECCCC
Q 048012 150 KIVSALAVDHSGSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSDRFLCVT-GSAQAKIYDRDGL 228 (616)
Q Consensus 150 ~~V~~v~~sp~g~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~s-~d~~v~vwd~~~~ 228 (616)
.....++++ .+.++++...++.|.+||..++.. . ..+ ........+++++++ .|+++. .++.|.+||..+.
T Consensus 44 ~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~-~---~~i--~~~~~p~~i~~~~~g-~lyv~~~~~~~v~~iD~~t~ 115 (328)
T 3dsm_A 44 DVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKE-V---GRI--TGFTSPRYIHFLSDE-KAYVTQIWDYRIFIINPKTY 115 (328)
T ss_dssp SCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCE-E---EEE--ECCSSEEEEEEEETT-EEEEEEBSCSEEEEEETTTT
T ss_pred ccceEEEEE-CCEEEEEEcCCCEEEEEECcccEE-E---EEc--CCCCCCcEEEEeCCC-eEEEEECCCCeEEEEECCCC
Confidence 345677774 345566666679999999987532 1 112 123568899999998 555555 7899999999987
Q ss_pred eeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEe-CCCCEEEEECCCccccceEEeeeccCCCCccEEEEEE
Q 048012 229 TLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSS-EDGSLRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAW 307 (616)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s-~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 307 (616)
++..... +....+.......+++ +++.++++.. .+++|.+||+.+.+....+... .....+++
T Consensus 116 ~~~~~i~-------~g~~~~~~~~p~~i~~--~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g-------~~p~~i~~ 179 (328)
T 3dsm_A 116 EITGYIE-------CPDMDMESGSTEQMVQ--YGKYVYVNCWSYQNRILKIDTETDKVVDELTIG-------IQPTSLVM 179 (328)
T ss_dssp EEEEEEE-------CTTCCTTTCBCCCEEE--ETTEEEEEECTTCCEEEEEETTTTEEEEEEECS-------SCBCCCEE
T ss_pred eEEEEEE-------cCCccccCCCcceEEE--ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEcC-------CCccceEE
Confidence 7643211 1111112223445666 2444555544 4889999999887655443221 13467889
Q ss_pred CCCCCeEEEEeCC----------CcEEEEeCCCCCCCCCceeeecCC-CCCeEEEEEcCCCCeEEEEecCCcEEEEeCCC
Q 048012 308 DCDGKCIAGGIGD----------GSIQVWNLKPGWGSRPDIHVEKGH-SDDITALKFSSDGRILLSRSFDGSLKVWDLRK 376 (616)
Q Consensus 308 sp~g~~l~~g~~d----------g~I~iwd~~~~~~~~~~~~~~~~h-~~~V~~l~~spdg~~l~s~s~Dg~v~lwd~~~ 376 (616)
+++|++++++..+ +.|.+||..++ .....+... ......|+|+|++++|+++.. .|.+||+.+
T Consensus 180 ~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~----~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t 253 (328)
T 3dsm_A 180 DKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETF----TVEKQFKFKLGDWPSEVQLNGTRDTLYWINN--DIWRMPVEA 253 (328)
T ss_dssp CTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTT----EEEEEEECCTTCCCEEEEECTTSCEEEEESS--SEEEEETTC
T ss_pred cCCCCEEEEECCCccCCccccCCceEEEEECCCC----eEEEEEecCCCCCceeEEEecCCCEEEEEcc--EEEEEECCC
Confidence 9999977776654 78999999875 343333322 236899999999999888765 899999986
Q ss_pred CCCcceEecCCCCCCcceeEEECCC-CCEEEEe----eccccccCCCceEEEEeCCCCceEEEEecCCCCCeEEEEEc
Q 048012 377 MKEPLKVFEDLPNNYAQTNVAFSPD-EQLFLTG----TSVERESTTGGLLCFYDREKLELVSRVGISPACSVVQCAWH 449 (616)
Q Consensus 377 ~~~~~~~~~~~~~~~~v~~v~fspd-g~~l~~g----s~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~ 449 (616)
.......+.. ........++++|+ +.++++. . .++.|.+||.. ++.+.++... .....++|-
T Consensus 254 ~~~~~~~~~~-~~~~~p~gi~vdp~~g~lyva~~~~y~-------~~~~V~v~d~~-g~~~~~i~~G--~~P~~~~~~ 320 (328)
T 3dsm_A 254 DRVPVRPFLE-FRDTKYYGLTVNPNNGEVYVADAIDYQ-------QQGIVYRYSPQ-GKLIDEFYVG--IIPGAFCWK 320 (328)
T ss_dssp SSCCSSCSBC-CCSSCEEEEEECTTTCCEEEEECTTSS-------SEEEEEEECTT-CCEEEEEEEE--ESEEEEEEE
T ss_pred Cceeeeeeec-CCCCceEEEEEcCCCCeEEEEcccccc-------cCCEEEEECCC-CCEEEEEEec--cCcceEEEe
Confidence 5432111111 11345788999995 5555554 3 67999999998 9999888652 234555554
No 195
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.52 E-value=3.4e-12 Score=128.40 Aligned_cols=277 Identities=12% Similarity=0.038 Sum_probs=174.5
Q ss_pred cCCcEEEEeCCCCccccccceec-CCCCCCceEEEEecCCCCeEEEEeCCCeEEEEECCCCeeeeEeeCceeEeecccCC
Q 048012 169 YDYTVRMYDFQGMNSRLQSFRQL-EPSEGHQVRNLSWSPTSDRFLCVTGSAQAKIYDRDGLTLGEFVKGDMYIRDLKNTK 247 (616)
Q Consensus 169 ~Dg~i~iwd~~~~~~~~~~~~~~-~~~~~~~v~~l~~sp~g~~l~~~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~ 247 (616)
.+++|.+||..++......+... ....+.....+.+. .+..+++...++.|.+||..+.++....
T Consensus 15 ~~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i------------- 80 (328)
T 3dsm_A 15 SNATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRI------------- 80 (328)
T ss_dssp CCBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEE-------------
T ss_pred CCceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEc-------------
Confidence 37899999998754221111100 11223346778774 3445555556799999999877653221
Q ss_pred CcccceEEEEEcCCCCCEEEEEeCCCCEEEEECCCccccceEEeeeccCCCCccEEEEEECCCCCeEEEEe--CCCcEEE
Q 048012 248 GHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWDCDGKCIAGGI--GDGSIQV 325 (616)
Q Consensus 248 ~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~g~--~dg~I~i 325 (616)
........+++++++ .++++...++.|.+||..+.+....+.... ..........+++ ++..|+++. .++.|.+
T Consensus 81 ~~~~~p~~i~~~~~g-~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~-~~~~~~~p~~i~~--~~~~lyv~~~~~~~~v~v 156 (328)
T 3dsm_A 81 TGFTSPRYIHFLSDE-KAYVTQIWDYRIFIINPKTYEITGYIECPD-MDMESGSTEQMVQ--YGKYVYVNCWSYQNRILK 156 (328)
T ss_dssp ECCSSEEEEEEEETT-EEEEEEBSCSEEEEEETTTTEEEEEEECTT-CCTTTCBCCCEEE--ETTEEEEEECTTCCEEEE
T ss_pred CCCCCCcEEEEeCCC-eEEEEECCCCeEEEEECCCCeEEEEEEcCC-ccccCCCcceEEE--ECCEEEEEcCCCCCEEEE
Confidence 122457788998876 455555589999999998866544332211 0000112345666 344555444 4889999
Q ss_pred EeCCCCCCCCCceeeecCCCCCeEEEEEcCCCCeEEEEecC----------CcEEEEeCCCCCCcceEecCCCCCCccee
Q 048012 326 WNLKPGWGSRPDIHVEKGHSDDITALKFSSDGRILLSRSFD----------GSLKVWDLRKMKEPLKVFEDLPNNYAQTN 395 (616)
Q Consensus 326 wd~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~D----------g~v~lwd~~~~~~~~~~~~~~~~~~~v~~ 395 (616)
||+.++ .....+.. ......++++++|++++++..+ +.|.+||..+.. ....+. .+....+..
T Consensus 157 iD~~t~----~~~~~i~~-g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~-v~~~~~-~~~g~~p~~ 229 (328)
T 3dsm_A 157 IDTETD----KVVDELTI-GIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFT-VEKQFK-FKLGDWPSE 229 (328)
T ss_dssp EETTTT----EEEEEEEC-SSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTE-EEEEEE-CCTTCCCEE
T ss_pred EECCCC----eEEEEEEc-CCCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCe-EEEEEe-cCCCCCcee
Confidence 999876 34444433 2345789999999988777655 789999998643 333332 222235889
Q ss_pred EEECCCCCEEEEeeccccccCCCceEEEEeCCCCceEEEEecCC-CCCeEEEEEcCCCCcEEEEec-cCCCCceEEEecc
Q 048012 396 VAFSPDEQLFLTGTSVERESTTGGLLCFYDREKLELVSRVGISP-ACSVVQCAWHPKLNQIFATAG-DKSQGGTHILYDP 473 (616)
Q Consensus 396 v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~~v~~~~~~p~~~~l~~~~~-d~~~~~~~~v~~~ 473 (616)
++|+|++++|+++. . .|.+||+.+++......... ......++++|++..|+++.. +-...+.+.+|++
T Consensus 230 la~~~d~~~lyv~~-------~--~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~ 300 (328)
T 3dsm_A 230 VQLNGTRDTLYWIN-------N--DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSP 300 (328)
T ss_dssp EEECTTSCEEEEES-------S--SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECT
T ss_pred EEEecCCCEEEEEc-------c--EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECC
Confidence 99999999999875 3 89999999887642111111 356889999997777777761 1012667888876
Q ss_pred cCCCCCcEEE
Q 048012 474 RLSERGALVC 483 (616)
Q Consensus 474 ~~s~~g~~l~ 483 (616)
. |+++.
T Consensus 301 ~----g~~~~ 306 (328)
T 3dsm_A 301 Q----GKLID 306 (328)
T ss_dssp T----CCEEE
T ss_pred C----CCEEE
Confidence 4 65544
No 196
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.52 E-value=4.5e-12 Score=123.95 Aligned_cols=223 Identities=9% Similarity=0.062 Sum_probs=155.0
Q ss_pred CCCEEEEEEcCCcEEEEeCCCCccccccceecCCCCCCceEEEEecCCCCeEEEEeCCCeEEEEECCCCeeeeEeeCcee
Q 048012 160 SGSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSDRFLCVTGSAQAKIYDRDGLTLGEFVKGDMY 239 (616)
Q Consensus 160 ~g~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~s~d~~v~vwd~~~~~~~~~~~~~~~ 239 (616)
.+++|++++.|+.|++||.+++.... . +.......+.++.++|+|+.|+ +.++.|..||.++..++.+..
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~w-~---~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~~G~~~W~~~~---- 73 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIVW-E---YPLEKGWECNSVAATKAGEILF--SYSKGAKMITRDGRELWNIAA---- 73 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEEE-E---EECCTTCCCCEEEECTTSCEEE--ECBSEEEEECTTSCEEEEEEC----
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEEE-E---eCCCccCCCcCeEECCCCCEEE--eCCCCEEEECCCCCEEEEEcC----
Confidence 46799999999999999986654221 1 1111113588999999999777 567889999997766665421
Q ss_pred EeecccCCCcccceEEEEEcCCCCCEEEEEeC-CCCEEEEECCCccccceEEeeeccCCCCccEEEEEECCCCCeEEEEe
Q 048012 240 IRDLKNTKGHICGLTCGEWHPKTKETILTSSE-DGSLRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWDCDGKCIAGGI 318 (616)
Q Consensus 240 ~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~-Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~g~ 318 (616)
+....+.++.+.+++ +++++.+. ++.|..+|. +++.+..+...............+++.++|++|++..
T Consensus 74 --------~~~~~~~~~~~~~dG-~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~ 143 (276)
T 3no2_A 74 --------PAGCEMQTARILPDG-NALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLF 143 (276)
T ss_dssp --------CTTCEEEEEEECTTS-CEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEET
T ss_pred --------CCCccccccEECCCC-CEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEec
Confidence 122357788999988 57777776 777777775 4454444432211111112344567889999999999
Q ss_pred CCCcEEEEeCCCCCCCCCceeeecCCCCCeEEEEEcCCCCeEEEEecCCcEEEEeCCCCCCcceEecCC--C--CCCcce
Q 048012 319 GDGSIQVWNLKPGWGSRPDIHVEKGHSDDITALKFSSDGRILLSRSFDGSLKVWDLRKMKEPLKVFEDL--P--NNYAQT 394 (616)
Q Consensus 319 ~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~--~--~~~~v~ 394 (616)
.++.|.+||.. + +.+..+..+ ..+.++.+.++|++|++++.+++|..+|..+++. +..+... . ....+.
T Consensus 144 ~~~~v~~~d~~-G----~~~w~~~~~-~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~-~w~~~~~~~~~~~l~~~~ 216 (276)
T 3no2_A 144 ATSEVREIAPN-G----QLLNSVKLS-GTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRI-VRRVNANDIEGVQLFFVA 216 (276)
T ss_dssp TTTEEEEECTT-S----CEEEEEECS-SCCCEEEECTTSCEEEECBTTSEEEEECTTTCCE-EEEEEGGGSBSCCCSEEE
T ss_pred CCCEEEEECCC-C----CEEEEEECC-CCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcE-EEEecCCCCCCccccccc
Confidence 99999999987 6 455555543 4567788899999999999888999999887654 3333211 1 123378
Q ss_pred eEEECCCCCEEEEee
Q 048012 395 NVAFSPDEQLFLTGT 409 (616)
Q Consensus 395 ~v~fspdg~~l~~gs 409 (616)
.++..++|.++++..
T Consensus 217 ~~~~~~~G~i~v~~~ 231 (276)
T 3no2_A 217 QLFPLQNGGLYICNW 231 (276)
T ss_dssp EEEECTTSCEEEEEE
T ss_pred cceEcCCCCEEEEec
Confidence 889999999988874
No 197
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.52 E-value=1e-10 Score=115.31 Aligned_cols=239 Identities=9% Similarity=0.027 Sum_probs=163.5
Q ss_pred CCceEEEEecCCCCeEEEEeCCCeEEEEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCE
Q 048012 196 GHQVRNLSWSPTSDRFLCVTGSAQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSL 275 (616)
Q Consensus 196 ~~~v~~l~~sp~g~~l~~~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v 275 (616)
...+.+++++++|..+++...++.|.+||.. ..+..+. ...+...+.++++.+++ .++++...++.|
T Consensus 14 ~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~-----------~~~~~~~~~~i~~~~~g-~l~v~~~~~~~i 80 (299)
T 2z2n_A 14 DTGPYGITVSDKGKVWITQHKANMISCINLD-GKITEYP-----------LPTPDAKVMCLTISSDG-EVWFTENAANKI 80 (299)
T ss_dssp SCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEE-----------CSSTTCCEEEEEECTTS-CEEEEETTTTEE
T ss_pred CCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeEEec-----------CCcccCceeeEEECCCC-CEEEeCCCCCeE
Confidence 3458999999999877766567899999988 4433221 11234678899999977 577776668889
Q ss_pred EEEECCCccccceEEeeeccCCCCccEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCCCCCceeeecCCCCCeEEEEEcC
Q 048012 276 RIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWDCDGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHSDDITALKFSS 355 (616)
Q Consensus 276 ~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp 355 (616)
..||... . ...+... .....+.+++++++|+++++...++.|.+||. .+. ........+...+.++++.+
T Consensus 81 ~~~~~~g-~-~~~~~~~----~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~---~~~~~~~~~~~~~~~i~~~~ 150 (299)
T 2z2n_A 81 GRITKKG-I-IKEYTLP----NPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGK---IREYELPNKGSYPSFITLGS 150 (299)
T ss_dssp EEECTTS-C-EEEEECS----STTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCC---EEEEECSSTTCCEEEEEECT
T ss_pred EEECCCC-c-EEEEeCC----CcCCCceeeEECCCCCEEEEecCCceEEEECC-CCC---EEEecCCCCCCCCceEEEcC
Confidence 9999752 2 2222111 12236889999999998888777889999998 431 11112233455689999999
Q ss_pred CCCeEEEEecCCcEEEEeCCCCCCcceEecCCCCCCcceeEEECCCCCEEEEeeccccccCCCceEEEEeCCCCceEEEE
Q 048012 356 DGRILLSRSFDGSLKVWDLRKMKEPLKVFEDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREKLELVSRV 435 (616)
Q Consensus 356 dg~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~~~~~~~~ 435 (616)
+|+++++...++.|.+||. ++. +..+........+..++++++|.++++.. .++.|.+||. +++... +
T Consensus 151 ~g~l~v~~~~~~~i~~~~~-~g~--~~~~~~~~~~~~~~~i~~~~~g~l~v~~~-------~~~~i~~~~~-~g~~~~-~ 218 (299)
T 2z2n_A 151 DNALWFTENQNNAIGRITE-SGD--ITEFKIPTPASGPVGITKGNDDALWFVEI-------IGNKIGRITT-SGEITE-F 218 (299)
T ss_dssp TSCEEEEETTTTEEEEECT-TCC--EEEEECSSTTCCEEEEEECTTSSEEEEET-------TTTEEEEECT-TCCEEE-E
T ss_pred CCCEEEEeCCCCEEEEEcC-CCc--EEEeeCCCCCCcceeEEECCCCCEEEEcc-------CCceEEEECC-CCcEEE-E
Confidence 9988887777889999998 433 22221112234478999999999777765 5788999999 776443 3
Q ss_pred ecC-CCCCeEEEEEcCCCCcEEEEeccCCCCceEEEecc
Q 048012 436 GIS-PACSVVQCAWHPKLNQIFATAGDKSQGGTHILYDP 473 (616)
Q Consensus 436 ~~~-~~~~v~~~~~~p~~~~l~~~~~d~~~~~~~~v~~~ 473 (616)
... ....+..++++++++ |+++... .+.+.+|++
T Consensus 219 ~~~~~~~~~~~i~~~~~g~-l~v~~~~---~~~i~~~d~ 253 (299)
T 2z2n_A 219 KIPTPNARPHAITAGAGID-LWFTEWG---ANKIGRLTS 253 (299)
T ss_dssp ECSSTTCCEEEEEECSTTC-EEEEETT---TTEEEEEET
T ss_pred ECCCCCCCceeEEECCCCC-EEEeccC---CceEEEECC
Confidence 222 345789999999987 5545421 456777765
No 198
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.49 E-value=4.7e-12 Score=123.81 Aligned_cols=214 Identities=12% Similarity=0.056 Sum_probs=155.2
Q ss_pred CCCeEEEEeCCCeEEEEECCCCe-eeeEeeCceeEeecccCCCcc-cceEEEEEcCCCCCEEEEEeCCCCEEEEECCCcc
Q 048012 207 TSDRFLCVTGSAQAKIYDRDGLT-LGEFVKGDMYIRDLKNTKGHI-CGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFK 284 (616)
Q Consensus 207 ~g~~l~~~s~d~~v~vwd~~~~~-~~~~~~~~~~~~~~~~~~~h~-~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~ 284 (616)
.++.|++++.++.|.+||..+++ ++.+. .+. ..+.++.+.|++ ++|+ +.++.|+.||. +++
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~-------------~~~~~~~~~~~~~pdG-~ilv--s~~~~V~~~d~-~G~ 66 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIVWEYP-------------LEKGWECNSVAATKAG-EILF--SYSKGAKMITR-DGR 66 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEEEEEE-------------CCTTCCCCEEEECTTS-CEEE--ECBSEEEEECT-TSC
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEEEEeC-------------CCccCCCcCeEECCCC-CEEE--eCCCCEEEECC-CCC
Confidence 35778888999999999995444 44331 222 357888999987 5777 45788999998 666
Q ss_pred ccceEEeeeccCCCCccEEEEEECCCCCeEEEEeC-CCcEEEEeCCCCCCCCCceeeec------CCCCCeEEEEEcCCC
Q 048012 285 SQKQVIKPKLARPGRVAVTTCAWDCDGKCIAGGIG-DGSIQVWNLKPGWGSRPDIHVEK------GHSDDITALKFSSDG 357 (616)
Q Consensus 285 ~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~g~~-dg~I~iwd~~~~~~~~~~~~~~~------~h~~~V~~l~~spdg 357 (616)
.+..+.. .....+.++.+.++|++|++.+. ++.|..+|.. + +.+..+. .+......+++.++|
T Consensus 67 ~~W~~~~-----~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~~-G----k~l~~~~~~~~~~~~~~~~~~v~~~~~G 136 (276)
T 3no2_A 67 ELWNIAA-----PAGCEMQTARILPDGNALVAWCGHPSTILEVNMK-G----EVLSKTEFETGIERPHAQFRQINKNKKG 136 (276)
T ss_dssp EEEEEEC-----CTTCEEEEEEECTTSCEEEEEESTTEEEEEECTT-S----CEEEEEEECCSCSSGGGSCSCCEECTTS
T ss_pred EEEEEcC-----CCCccccccEECCCCCEEEEecCCCCEEEEEeCC-C----CEEEEEeccCCCCcccccccCceECCCC
Confidence 5555432 11236888999999999999887 7888888863 3 2332221 222345667889999
Q ss_pred CeEEEEecCCcEEEEeCCCCCCcceEecCCCCCCcceeEEECCCCCEEEEeeccccccCCCceEEEEeCCCCceEEEEec
Q 048012 358 RILLSRSFDGSLKVWDLRKMKEPLKVFEDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREKLELVSRVGI 437 (616)
Q Consensus 358 ~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~~~~~~~~~~ 437 (616)
++|++...++.|.+||.. ++. +..+... ..+.++.+.++|.+|+++. .++.|..||..+++.+.++..
T Consensus 137 ~~lv~~~~~~~v~~~d~~-G~~-~w~~~~~---~~~~~~~~~~~g~~~v~~~-------~~~~v~~~d~~tG~~~w~~~~ 204 (276)
T 3no2_A 137 NYLVPLFATSEVREIAPN-GQL-LNSVKLS---GTPFSSAFLDNGDCLVACG-------DAHCFVQLNLESNRIVRRVNA 204 (276)
T ss_dssp CEEEEETTTTEEEEECTT-SCE-EEEEECS---SCCCEEEECTTSCEEEECB-------TTSEEEEECTTTCCEEEEEEG
T ss_pred CEEEEecCCCEEEEECCC-CCE-EEEEECC---CCccceeEcCCCCEEEEeC-------CCCeEEEEeCcCCcEEEEecC
Confidence 999999999999999987 543 4444332 3366788899999999988 678999999999999999863
Q ss_pred CC-----CCCeEEEEEcCCCCcEEEEe
Q 048012 438 SP-----ACSVVQCAWHPKLNQIFATA 459 (616)
Q Consensus 438 ~~-----~~~v~~~~~~p~~~~l~~~~ 459 (616)
.. ...+..+...++++.+++..
T Consensus 205 ~~~~~~~l~~~~~~~~~~~G~i~v~~~ 231 (276)
T 3no2_A 205 NDIEGVQLFFVAQLFPLQNGGLYICNW 231 (276)
T ss_dssp GGSBSCCCSEEEEEEECTTSCEEEEEE
T ss_pred CCCCCccccccccceEcCCCCEEEEec
Confidence 21 12367888888887777664
No 199
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.47 E-value=4.2e-11 Score=119.22 Aligned_cols=254 Identities=11% Similarity=0.084 Sum_probs=161.6
Q ss_pred cCCcccEEEEEECCCCCEEEE-------EEcCCcEEEEeCCCCcccccccee-cCCCCCCceEEEEecCCCCeEEEEeCC
Q 048012 146 KGHTKIVSALAVDHSGSRVLS-------GSYDYTVRMYDFQGMNSRLQSFRQ-LEPSEGHQVRNLSWSPTSDRFLCVTGS 217 (616)
Q Consensus 146 ~~H~~~V~~v~~sp~g~~las-------gs~Dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~v~~l~~sp~g~~l~~~s~d 217 (616)
...-....+++|+++|.++++ +..++.|.+||..++.. ..+.. ....+...+.++++++++..|++++..
T Consensus 14 ~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~--~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~~ 91 (314)
T 1pjx_A 14 TEDIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKK--TVICKPEVNGYGGIPAGCQCDRDANQLFVADMR 91 (314)
T ss_dssp ECCCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCE--EEEECCEETTEECCEEEEEECSSSSEEEEEETT
T ss_pred hccCCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcE--EEEEecccCCCCCCCceEEEecCCCcEEEEECC
Confidence 444556789999999988888 67789999999765432 11110 000123458999999993344555555
Q ss_pred CeEEEEECCCCeeeeE-eeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCC---------------CCEEEEECC
Q 048012 218 AQAKIYDRDGLTLGEF-VKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSED---------------GSLRIWDVN 281 (616)
Q Consensus 218 ~~v~vwd~~~~~~~~~-~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~D---------------g~v~iwd~~ 281 (616)
..|.+||.+ ..+..+ .. .........+.++++.+++ +++++...+ +.|..||..
T Consensus 92 ~~l~~~d~~-g~~~~~~~~--------~~~~~~~~~~~~i~~d~~g-~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 161 (314)
T 1pjx_A 92 LGLLVVQTD-GTFEEIAKK--------DSEGRRMQGCNDCAFDYEG-NLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD 161 (314)
T ss_dssp TEEEEEETT-SCEEECCSB--------CTTSCBCBCCCEEEECTTS-CEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT
T ss_pred CCEEEEeCC-CCEEEEEec--------cCCCccccCCcCEEECCCC-CEEEEecCcccccccccccccCCCCeEEEECCC
Confidence 589999988 443221 10 0001223458899999987 566666544 456666654
Q ss_pred CccccceEEeeeccCCCCccEEEEEEC----CCCCeEEEE-eCCCcEEEEeCC-CCCC-CCCceeeecCCC-CCeEEEEE
Q 048012 282 EFKSQKQVIKPKLARPGRVAVTTCAWD----CDGKCIAGG-IGDGSIQVWNLK-PGWG-SRPDIHVEKGHS-DDITALKF 353 (616)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~v~~~~~s----p~g~~l~~g-~~dg~I~iwd~~-~~~~-~~~~~~~~~~h~-~~V~~l~~ 353 (616)
++ ...+... . .....++|+ ++++.|+++ ..++.|.+||+. .+.. .......+..+. ..+..|++
T Consensus 162 -g~-~~~~~~~-~-----~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~ 233 (314)
T 1pjx_A 162 -GQ-MIQVDTA-F-----QFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDF 233 (314)
T ss_dssp -SC-EEEEEEE-E-----SSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEE
T ss_pred -CC-EEEeccC-C-----CCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEE
Confidence 22 2222111 1 146788999 999765555 567899999976 2200 001222333443 56889999
Q ss_pred cCCCCeEEEEecCCcEEEEeCCCCCCcceEecCCCCCCcceeEEECCCCCEEEEeeccccccCCCceEEEEeCCC
Q 048012 354 SSDGRILLSRSFDGSLKVWDLRKMKEPLKVFEDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREK 428 (616)
Q Consensus 354 spdg~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~ 428 (616)
+++|+++++...++.|.+||..++. .+..+... ...+.+++|++++++|++++. .++.|..|++..
T Consensus 234 d~~G~l~v~~~~~~~i~~~d~~~g~-~~~~~~~~--~~~~~~i~~~~dg~~l~v~~~------~~~~l~~~~~~~ 299 (314)
T 1pjx_A 234 DEDNNLLVANWGSSHIEVFGPDGGQ-PKMRIRCP--FEKPSNLHFKPQTKTIFVTEH------ENNAVWKFEWQR 299 (314)
T ss_dssp BTTCCEEEEEETTTEEEEECTTCBS-CSEEEECS--SSCEEEEEECTTSSEEEEEET------TTTEEEEEECSS
T ss_pred CCCCCEEEEEcCCCEEEEEcCCCCc-EeEEEeCC--CCCceeEEECCCCCEEEEEeC------CCCeEEEEeCCC
Confidence 9999998888888999999987443 33344322 245899999999996666552 567899999764
No 200
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.46 E-value=7.1e-11 Score=120.63 Aligned_cols=252 Identities=12% Similarity=0.036 Sum_probs=159.3
Q ss_pred EEEECCCCCEEEEEE----------cCCcEEEEeCCCCccccccceec---CCCCCCceEEEEecCCCCeEEEEeC--CC
Q 048012 154 ALAVDHSGSRVLSGS----------YDYTVRMYDFQGMNSRLQSFRQL---EPSEGHQVRNLSWSPTSDRFLCVTG--SA 218 (616)
Q Consensus 154 ~v~~sp~g~~lasgs----------~Dg~i~iwd~~~~~~~~~~~~~~---~~~~~~~v~~l~~sp~g~~l~~~s~--d~ 218 (616)
.++|+|+|++|+.+. .++.|.+||..+... ...+... ....+.....+.|+|+|++|+++.. ++
T Consensus 70 ~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~-~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~ 148 (373)
T 2mad_H 70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLP-IADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGP 148 (373)
T ss_pred CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcE-EEEEECCCccccccCCCccceEECCCCCEEEEEecCCCC
Confidence 899999999999886 367899999875431 1111100 0001233568999999999998874 57
Q ss_pred eEEEEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEEEECCCccccceEEeeeccCCC
Q 048012 219 QAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPG 298 (616)
Q Consensus 219 ~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~ 298 (616)
.|.++| .+.++... +.... .|+.+.|.+...+++.+.||.+.+||. +++..............
T Consensus 149 ~v~viD-~t~~~~~~---------~i~~~------~~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~ 211 (373)
T 2mad_H 149 AVGLVV-QGGSSDDQ---------LLSSP------TCYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAA 211 (373)
T ss_pred eEEEEE-CCCCEEeE---------EcCCC------ceEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCC
Confidence 899999 87764211 00011 134566777678888889999999999 66544221100000011
Q ss_pred CccEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCCCCCceeeecC----------CCCCeEEEEEcCCCCeEEEEec---
Q 048012 299 RVAVTTCAWDCDGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKG----------HSDDITALKFSSDGRILLSRSF--- 365 (616)
Q Consensus 299 ~~~v~~~~~sp~g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~----------h~~~V~~l~~spdg~~l~s~s~--- 365 (616)
........|.+++..++..+..+.|.+.|+... ....+..+.. .......++++++++.|++...
T Consensus 212 ~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~--~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~ 289 (373)
T 2mad_H 212 QNLLTQPAQANKSGRIVWPVYSGKILQADISAA--GATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQS 289 (373)
T ss_pred cceeecceeEecCCEEEEEcCCceEEEEeccCC--cceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCC
Confidence 101223456666655555557889999998753 1111121110 1122445889999988887653
Q ss_pred -------CCcEEEEeCCCCCCcceEecCCCCCCcceeEEECCCCC-EEEEeeccccccCCCceEEEEeCCCCceEEEE
Q 048012 366 -------DGSLKVWDLRKMKEPLKVFEDLPNNYAQTNVAFSPDEQ-LFLTGTSVERESTTGGLLCFYDREKLELVSRV 435 (616)
Q Consensus 366 -------Dg~v~lwd~~~~~~~~~~~~~~~~~~~v~~v~fspdg~-~l~~gs~~~~~~~~dg~i~iwd~~~~~~~~~~ 435 (616)
.+.|.++|+.+.+ .+..+. ......+++|+|||+ +++++.. .++.|.+||+.+++.+.++
T Consensus 290 ~~~~~~~~~~V~VID~~t~~-vv~~i~---~g~~p~~i~~s~Dg~~~l~v~~~------~~~~V~ViD~~t~~vv~~i 357 (373)
T 2mad_H 290 AWKLHAAAKEVTSVTGLVGQ-TSSQIS---LGHDVDAISVAQDGGPDLYALSA------GTEVLHIYDAGAGDQDQST 357 (373)
T ss_pred cccccCCCCeEEEEECCCCE-EEEEEE---CCCCcCeEEECCCCCeEEEEEcC------CCCeEEEEECCCCCEEeee
Confidence 3579999998744 334442 223478999999999 6766652 4799999999999999884
No 201
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.45 E-value=4e-11 Score=119.35 Aligned_cols=248 Identities=12% Similarity=0.117 Sum_probs=162.7
Q ss_pred ceEEEEecCCCCeEEE-------EeCCCeEEEEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEe
Q 048012 198 QVRNLSWSPTSDRFLC-------VTGSAQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSS 270 (616)
Q Consensus 198 ~v~~l~~sp~g~~l~~-------~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s 270 (616)
...+++|++++..+++ ...++.|.+|+..+..+..+.. ....++...+.+++++++++.++++.
T Consensus 19 ~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~--------~~~~~~~~~~~~i~~~~~~g~l~v~~- 89 (314)
T 1pjx_A 19 GAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICK--------PEVNGYGGIPAGCQCDRDANQLFVAD- 89 (314)
T ss_dssp TCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEEC--------CEETTEECCEEEEEECSSSSEEEEEE-
T ss_pred CccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEe--------cccCCCCCCCceEEEecCCCcEEEEE-
Confidence 4688999999877766 4678899999987666533211 01123556789999999833445444
Q ss_pred CCCCEEEEECCCccccceE-EeeeccCCCCccEEEEEECCCCCeEEEEeCC---------------CcEEEEeCCCCCCC
Q 048012 271 EDGSLRIWDVNEFKSQKQV-IKPKLARPGRVAVTTCAWDCDGKCIAGGIGD---------------GSIQVWNLKPGWGS 334 (616)
Q Consensus 271 ~Dg~v~iwd~~~~~~~~~~-~~~~~~~~~~~~v~~~~~sp~g~~l~~g~~d---------------g~I~iwd~~~~~~~ 334 (616)
....|.+||.. ++.. .+ .. .........+.+++++++|+++++...+ +.|..||.. +
T Consensus 90 ~~~~l~~~d~~-g~~~-~~~~~-~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g--- 162 (314)
T 1pjx_A 90 MRLGLLVVQTD-GTFE-EIAKK-DSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-G--- 162 (314)
T ss_dssp TTTEEEEEETT-SCEE-ECCSB-CTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-S---
T ss_pred CCCCEEEEeCC-CCEE-EEEec-cCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-C---
Confidence 44479999987 4321 11 11 1101111257899999999988877655 567777765 3
Q ss_pred CCceeeecCCCCCeEEEEEc----CCCCeEEEE-ecCCcEEEEeCCCCCCc--ceEecCCC-CC-CcceeEEECCCCCEE
Q 048012 335 RPDIHVEKGHSDDITALKFS----SDGRILLSR-SFDGSLKVWDLRKMKEP--LKVFEDLP-NN-YAQTNVAFSPDEQLF 405 (616)
Q Consensus 335 ~~~~~~~~~h~~~V~~l~~s----pdg~~l~s~-s~Dg~v~lwd~~~~~~~--~~~~~~~~-~~-~~v~~v~fspdg~~l 405 (616)
.. ..+..+......++|+ ++++.|+.+ ..++.|.+||+...... ...+.... .. ..+..++++++|+++
T Consensus 163 -~~-~~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~ 240 (314)
T 1pjx_A 163 -QM-IQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLL 240 (314)
T ss_dssp -CE-EEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEE
T ss_pred -CE-EEeccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEE
Confidence 12 2222333457899999 999765554 56789999998621211 11222222 11 347889999999988
Q ss_pred EEeeccccccCCCceEEEEeCCCCceEEEEecCCCCCeEEEEEcCCCCcEEEEeccCCCCceEEEeccc
Q 048012 406 LTGTSVERESTTGGLLCFYDREKLELVSRVGISPACSVVQCAWHPKLNQIFATAGDKSQGGTHILYDPR 474 (616)
Q Consensus 406 ~~gs~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~~~~~~~v~~~~ 474 (616)
++.. .++.|.+||..+++.+..+.. +...+.+++|+++++.|+++... .+.+..|++.
T Consensus 241 v~~~-------~~~~i~~~d~~~g~~~~~~~~-~~~~~~~i~~~~dg~~l~v~~~~---~~~l~~~~~~ 298 (314)
T 1pjx_A 241 VANW-------GSSHIEVFGPDGGQPKMRIRC-PFEKPSNLHFKPQTKTIFVTEHE---NNAVWKFEWQ 298 (314)
T ss_dssp EEEE-------TTTEEEEECTTCBSCSEEEEC-SSSCEEEEEECTTSSEEEEEETT---TTEEEEEECS
T ss_pred EEEc-------CCCEEEEEcCCCCcEeEEEeC-CCCCceeEEECCCCCEEEEEeCC---CCeEEEEeCC
Confidence 8876 678999999988887777764 34668999999998878777653 4556666654
No 202
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.44 E-value=8.4e-12 Score=140.08 Aligned_cols=254 Identities=14% Similarity=0.075 Sum_probs=158.5
Q ss_pred CCcccEEEEEECCCCCEEEEEEcC-----CcEEEEeCCCCccccccceecCCCCCCceEEEEecCCCCeEEEEeCCCe--
Q 048012 147 GHTKIVSALAVDHSGSRVLSGSYD-----YTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSDRFLCVTGSAQ-- 219 (616)
Q Consensus 147 ~H~~~V~~v~~sp~g~~lasgs~D-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~s~d~~-- 219 (616)
+|+..+..++|||||++||.++.+ ..|++||+.++....... ....+..++|+|+ +.|+.++.+..
T Consensus 160 ~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~~------~~~~~~~~~wspD-~~l~~~~~~~~~~ 232 (741)
T 1yr2_A 160 DGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADEL------KWVKFSGLAWLGN-DALLYSRFAEPKE 232 (741)
T ss_dssp ---EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEEE------EEEESCCCEESTT-SEEEEEECCCC--
T ss_pred CCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCccC------CCceeccEEEECC-CEEEEEEecCccc
Confidence 355578999999999999987654 469999998764311100 1111357899999 99998886543
Q ss_pred ------------EEEEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCC-----CCEEEEECCC
Q 048012 220 ------------AKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSED-----GSLRIWDVNE 282 (616)
Q Consensus 220 ------------v~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~D-----g~v~iwd~~~ 282 (616)
|++|++.+...... .+.....+...+..+.|+|+++ +|+..+.+ ..|++||+.+
T Consensus 233 ~~~~~~~~~~~~v~~~~lgt~~~~~~--------lv~~~~~~~~~~~~~~~SpDG~-~l~~~~~~~~~~~~~l~~~d~~~ 303 (741)
T 1yr2_A 233 GQAFQALNYNQTVWLHRLGTPQSADQ--------PVFATPELPKRGHGASVSSDGR-WVVITSSEGTDPVNTVHVARVTN 303 (741)
T ss_dssp ------CCCCCEEEEEETTSCGGGCE--------EEECCTTCTTCEEEEEECTTSC-EEEEEEECTTCSCCEEEEEEEET
T ss_pred ccccccCCCCCEEEEEECCCCchhCE--------EEeccCCCCeEEEEEEECCCCC-EEEEEEEccCCCcceEEEEECCC
Confidence 88888875432100 0111233444578999999986 55544433 3799999976
Q ss_pred ccc--cceEEeeeccCCCCccEEEEEECCCCCeEEEEeCC----CcEEEEeCCCCCCCCCceeeecCCCCCeEEEEEcCC
Q 048012 283 FKS--QKQVIKPKLARPGRVAVTTCAWDCDGKCIAGGIGD----GSIQVWNLKPGWGSRPDIHVEKGHSDDITALKFSSD 356 (616)
Q Consensus 283 ~~~--~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~g~~d----g~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~spd 356 (616)
+.. ...+... . ..+.... +++|+.|+..+.+ +.|.+||+.++. ......+..+...+..++|+ +
T Consensus 304 ~~~~~~~~l~~~-~-----~~~~~~~-~~dg~~l~~~s~~~~~~~~l~~~d~~~~~--~~~~~l~~~~~~~l~~~~~~-~ 373 (741)
T 1yr2_A 304 GKIGPVTALIPD-L-----KAQWDFV-DGVGDQLWFVSGDGAPLKKIVRVDLSGST--PRFDTVVPESKDNLESVGIA-G 373 (741)
T ss_dssp TEECCCEEEECS-S-----SSCEEEE-EEETTEEEEEECTTCTTCEEEEEECSSSS--CEEEEEECCCSSEEEEEEEE-B
T ss_pred CCCcccEEecCC-C-----CceEEEE-eccCCEEEEEECCCCCCCEEEEEeCCCCc--cccEEEecCCCCeEEEEEEE-C
Confidence 521 2222211 1 1233333 4889988887764 459999987631 12233344455557788887 6
Q ss_pred CCeEEEEecCCcEEEEeCCCCCCcceEecCCCCCCcceeEEECCCCCEEEEeeccccccCCCceEEEEeCCCCc
Q 048012 357 GRILLSRSFDGSLKVWDLRKMKEPLKVFEDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREKLE 430 (616)
Q Consensus 357 g~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~~~ 430 (616)
+.++++...|+..+||.+...+.....+. .+....+..++++|+++.|+...+. ....+.|++||+.+++
T Consensus 374 ~~lv~~~~~dg~~~l~~~~~~g~~~~~l~-~~~~~~v~~~~~s~d~~~l~~~~ss---~~~P~~i~~~d~~tg~ 443 (741)
T 1yr2_A 374 NRLFASYIHDAKSQVLAFDLDGKPAGAVS-LPGIGSASGLSGRPGDRHAYLSFSS---FTQPATVLALDPATAK 443 (741)
T ss_dssp TEEEEEEEETTEEEEEEEETTSCEEEECB-CSSSCEEEEEECCBTCSCEEEEEEE---TTEEEEEEEEETTTTE
T ss_pred CEEEEEEEECCEEEEEEEeCCCCceeecc-CCCCeEEEEeecCCCCCEEEEEEcC---CCCCCEEEEEECCCCc
Confidence 67888888899887776542222333333 2234457889999998866643310 1145889999998876
No 203
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.42 E-value=2.8e-10 Score=116.26 Aligned_cols=284 Identities=10% Similarity=0.008 Sum_probs=170.4
Q ss_pred ECCCCCEEEEEEc--CC---cEEEEeCCCCccccccceecCCCCCCceEEEEecCCCCeEEEEe----------CCCeEE
Q 048012 157 VDHSGSRVLSGSY--DY---TVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSDRFLCVT----------GSAQAK 221 (616)
Q Consensus 157 ~sp~g~~lasgs~--Dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~s----------~d~~v~ 221 (616)
..|+++++++... .. +|.+||..++.. ...+.. +..- .+.|+|+|++|+++. .++.|.
T Consensus 28 ~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~----~~~i~~--g~~p-~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~ 100 (373)
T 2mad_H 28 PGADGRRSYINLPAHHSAIIQQWVLDAGSGSI----LGHVNG--GFLP-NPVAAHSGSEFALASTSFSRIAKGKRTDYVE 100 (373)
T ss_pred CCCCCCEEEEeCCcccCCccEEEEEECCCCeE----EEEecC--CCCC-CeEECCCCCEEEEEeccccccccCCCCCeEE
Confidence 3467776666543 22 789999876531 122222 2223 899999999999886 367899
Q ss_pred EEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEe-C-CCCEEEEECCCccccce-EEeeeccCCC
Q 048012 222 IYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSS-E-DGSLRIWDVNEFKSQKQ-VIKPKLARPG 298 (616)
Q Consensus 222 vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s-~-Dg~v~iwd~~~~~~~~~-~~~~~~~~~~ 298 (616)
+||..+.++........ ..+.. +...-..+.|+|+++ +|++++ . +++|.++| .+++.... +.. .
T Consensus 101 viD~~t~~~~~~i~~~~---~~~~~--~g~~p~~~~~spDG~-~l~v~n~~~~~~v~viD-~t~~~~~~~i~~-----~- 167 (373)
T 2mad_H 101 VFDPVTFLPIADIELPD---APRFD--VGPYSWMNANTPNNA-DLLFFQFAAGPAVGLVV-QGGSSDDQLLSS-----P- 167 (373)
T ss_pred EEECCCCcEEEEEECCC---ccccc--cCCCccceEECCCCC-EEEEEecCCCCeEEEEE-CCCCEEeEEcCC-----C-
Confidence 99998665432211000 00000 012345789999986 555554 3 57899999 87655433 211 1
Q ss_pred CccEEEEEECCCC-CeEEEEeCCCcEEEEeCCCCCCCCCceeeec-----CCCCC-eEEEEEcCCCCeEEEEecCCcEEE
Q 048012 299 RVAVTTCAWDCDG-KCIAGGIGDGSIQVWNLKPGWGSRPDIHVEK-----GHSDD-ITALKFSSDGRILLSRSFDGSLKV 371 (616)
Q Consensus 299 ~~~v~~~~~sp~g-~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~-----~h~~~-V~~l~~spdg~~l~s~s~Dg~v~l 371 (616)
.++.+.+.+ +.+++.+.||.+.+||. ++. ...... ....+ .....|.+++..++..+..+.|.+
T Consensus 168 ----~~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~----~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~v 238 (373)
T 2mad_H 168 ----TCYHIHPGAPSTFYLLCAQGGLAKTDH-AGG----AAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQ 238 (373)
T ss_pred ----ceEEEEeCCCceEEEEcCCCCEEEEEC-CCc----EEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEE
Confidence 123444544 45667778999999999 652 221111 11122 233556676665555557889999
Q ss_pred EeCCCCCCc-ceEecCCC--------CCCcceeEEECCCCCEEEEeeccccc---cCCCceEEEEeCCCCceEEEEecCC
Q 048012 372 WDLRKMKEP-LKVFEDLP--------NNYAQTNVAFSPDEQLFLTGTSVERE---STTGGLLCFYDREKLELVSRVGISP 439 (616)
Q Consensus 372 wd~~~~~~~-~~~~~~~~--------~~~~v~~v~fspdg~~l~~gs~~~~~---~~~dg~i~iwd~~~~~~~~~~~~~~ 439 (616)
.|+...... +..+.... .......++|+|+++.|++....... ....+.|.++|+.+++.+.++...
T Consensus 239 id~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~g- 317 (373)
T 2mad_H 239 ADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLG- 317 (373)
T ss_pred EeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEECC-
Confidence 998653211 11111000 01113347899999988886521100 002468999999999999999653
Q ss_pred CCCeEEEEEcCCCC-cEEEEeccCCCCceEEEeccc
Q 048012 440 ACSVVQCAWHPKLN-QIFATAGDKSQGGTHILYDPR 474 (616)
Q Consensus 440 ~~~v~~~~~~p~~~-~l~~~~~d~~~~~~~~v~~~~ 474 (616)
.....++|+|+++ .++++... .+.+.|+|++
T Consensus 318 -~~p~~i~~s~Dg~~~l~v~~~~---~~~V~ViD~~ 349 (373)
T 2mad_H 318 -HDVDAISVAQDGGPDLYALSAG---TEVLHIYDAG 349 (373)
T ss_pred -CCcCeEEECCCCCeEEEEEcCC---CCeEEEEECC
Confidence 3589999999999 56665532 6788888876
No 204
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.42 E-value=2.4e-10 Score=113.09 Aligned_cols=232 Identities=12% Similarity=0.143 Sum_probs=152.9
Q ss_pred ceEEEEecCCCCeEE-EEeCCCeEEEEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEE
Q 048012 198 QVRNLSWSPTSDRFL-CVTGSAQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLR 276 (616)
Q Consensus 198 ~v~~l~~sp~g~~l~-~~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~ 276 (616)
-..+..|++++..|+ +....+.|..||..+.....+ .....+.++++++++. ++++ . +..|.
T Consensus 14 ~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~~~--------------~~~~~~~~i~~~~dG~-l~v~-~-~~~l~ 76 (297)
T 3g4e_A 14 CGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQRV--------------TMDAPVSSVALRQSGG-YVAT-I-GTKFC 76 (297)
T ss_dssp BEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEE--------------ECSSCEEEEEEBTTSS-EEEE-E-TTEEE
T ss_pred cccCCeEECCCCEEEEEECCCCEEEEEECCCCcEEEE--------------eCCCceEEEEECCCCC-EEEE-E-CCeEE
Confidence 366889999765544 445678999999987654222 1234688999999885 5544 4 56799
Q ss_pred EEECCCccccceEEeeeccCCCCccEEEEEECCCCCeEEEEeCC---------CcEEEEeCCCCCCCCCceeeecCCCCC
Q 048012 277 IWDVNEFKSQKQVIKPKLARPGRVAVTTCAWDCDGKCIAGGIGD---------GSIQVWNLKPGWGSRPDIHVEKGHSDD 347 (616)
Q Consensus 277 iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~g~~d---------g~I~iwd~~~~~~~~~~~~~~~~h~~~ 347 (616)
+||..+++.. .+.... .......++.++++++|+++++.... ....||.+... ........+...
T Consensus 77 ~~d~~~g~~~-~~~~~~-~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~----g~~~~~~~~~~~ 150 (297)
T 3g4e_A 77 ALNWKEQSAV-VLATVD-NDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPD----HHVKKYFDQVDI 150 (297)
T ss_dssp EEETTTTEEE-EEEECC-TTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTT----SCEEEEEEEESB
T ss_pred EEECCCCcEE-EEEecC-CCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECC----CCEEEEeecccc
Confidence 9998765432 222111 11123358899999999977655322 22344444321 122222333445
Q ss_pred eEEEEEcCCCCeEEE-EecCCcEEEEeCC--CCCCc-ceEecCCC-CCCcceeEEECCCCCEEEEeeccccccCCCceEE
Q 048012 348 ITALKFSSDGRILLS-RSFDGSLKVWDLR--KMKEP-LKVFEDLP-NNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLC 422 (616)
Q Consensus 348 V~~l~~spdg~~l~s-~s~Dg~v~lwd~~--~~~~~-~~~~~~~~-~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~ 422 (616)
...++|+|+++.|+. .+.++.|.+||+. ++... .+.+.... ....+..++++++|++.++.. .++.|.
T Consensus 151 pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~-------~~~~v~ 223 (297)
T 3g4e_A 151 SNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACY-------NGGRVI 223 (297)
T ss_dssp EEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEE-------TTTEEE
T ss_pred ccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEc-------CCCEEE
Confidence 789999999987654 4567899999974 32210 12222211 223478899999998887776 678899
Q ss_pred EEeCCCCceEEEEecCCCCCeEEEEEc-CCCCcEEEEec
Q 048012 423 FYDREKLELVSRVGISPACSVVQCAWH-PKLNQIFATAG 460 (616)
Q Consensus 423 iwd~~~~~~~~~~~~~~~~~v~~~~~~-p~~~~l~~~~~ 460 (616)
+||..+++.+..+..+ ...+++|+|. |+++.|++++.
T Consensus 224 ~~d~~tG~~~~~i~~p-~~~~t~~~f~g~d~~~L~vt~~ 261 (297)
T 3g4e_A 224 RLDPVTGKRLQTVKLP-VDKTTSCCFGGKNYSEMYVTCA 261 (297)
T ss_dssp EECTTTCCEEEEEECS-SSBEEEEEEESGGGCEEEEEEB
T ss_pred EEcCCCceEEEEEECC-CCCceEEEEeCCCCCEEEEEcC
Confidence 9999999999988763 4579999998 88888888876
No 205
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.42 E-value=5.4e-11 Score=120.14 Aligned_cols=299 Identities=11% Similarity=0.021 Sum_probs=184.3
Q ss_pred EECCCCCEEEEEEc-----CCcEEEEeCCCCccccccceecCCCCCCceEEEEecCCCCeEEEEe----------CCCeE
Q 048012 156 AVDHSGSRVLSGSY-----DYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSDRFLCVT----------GSAQA 220 (616)
Q Consensus 156 ~~sp~g~~lasgs~-----Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~s----------~d~~v 220 (616)
...|++++++.... ++.|.+.|..+.. ....+.. ...+ . +.++|+|++|+++. .++.|
T Consensus 39 ~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~----v~~~I~v-G~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~V 111 (386)
T 3sjl_D 39 APAPDARRVYVNDPAHFAAVTQQFVIDGEAGR----VIGMIDG-GFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYV 111 (386)
T ss_dssp CCCCCTTEEEEEECGGGCSSEEEEEEETTTTE----EEEEEEE-CSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEE
T ss_pred ccCCCCCEEEEEcCcccCCCCEEEEEECCCCe----EEEEEEC-CCCC-c-EEECCCCCEEEEEcccccccccCCCCCEE
Confidence 44688888887765 6789999987643 1122222 2223 4 99999999988876 35789
Q ss_pred EEEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEe-C-CCCEEEEECCCccccceEEeeeccCCC
Q 048012 221 KIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSS-E-DGSLRIWDVNEFKSQKQVIKPKLARPG 298 (616)
Q Consensus 221 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s-~-Dg~v~iwd~~~~~~~~~~~~~~~~~~~ 298 (616)
.+||..+.++.....-. ..........-..+.|+|+++ +++++. . ++.|.++|+.+.+....+... +
T Consensus 112 sviD~~t~~v~~~I~v~-----~g~r~~~g~~P~~~a~spDGk-~lyVan~~~~~~VsVID~~t~~vv~tI~v~-----g 180 (386)
T 3sjl_D 112 EVFDPVTLLPTADIELP-----DAPRFLVGTYPWMTSLTPDGK-TLLFYQFSPAPAVGVVDLEGKAFKRMLDVP-----D 180 (386)
T ss_dssp EEECTTTCCEEEEEEET-----TCCCCCBSCCGGGEEECTTSS-EEEEEECSSSCEEEEEETTTTEEEEEEECC-----S
T ss_pred EEEECCCCeEEEEEECC-----CccccccCCCCceEEEcCCCC-EEEEEEcCCCCeEEEEECCCCcEEEEEECC-----C
Confidence 99999987653321100 000000112345689999996 555554 3 689999999987766555321 1
Q ss_pred CccEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCCCCCceeeecCC----CCCeE-EEEEc-CCCCeEEEEecCCcEEEE
Q 048012 299 RVAVTTCAWDCDGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGH----SDDIT-ALKFS-SDGRILLSRSFDGSLKVW 372 (616)
Q Consensus 299 ~~~v~~~~~sp~g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~h----~~~V~-~l~~s-pdg~~l~s~s~Dg~v~lw 372 (616)
+ ...+....+.+++.+.||.+.+.++.... ........+ ...+. ...|. ++|++++ .+.+|+|.+.
T Consensus 181 ---~-~~~~P~g~~~~~~~~~DG~~~~v~~~~~g---~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~ 252 (386)
T 3sjl_D 181 ---C-YHIFPTAPDTFFMHCRDGSLAKVAFGTEG---TPEITHTEVFHPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQI 252 (386)
T ss_dssp ---E-EEEEEEETTEEEEEETTSCEEEEECCSSS---CCEEEECCCCSCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEE
T ss_pred ---c-ceeecCCCceeEEECCCCCEEEEECCCCC---eEEEeecceeccccccccccceeEcCCCcEEE-EeCCCEEEEE
Confidence 1 12233345667788889999888887521 121111111 12222 24664 6786555 5558999999
Q ss_pred eCCCCCC-cceEecCCC--------CCCcceeEEECCCCCEEEEeeccc-cccC--CCceEEEEeCCCCceEEEEecCCC
Q 048012 373 DLRKMKE-PLKVFEDLP--------NNYAQTNVAFSPDEQLFLTGTSVE-REST--TGGLLCFYDREKLELVSRVGISPA 440 (616)
Q Consensus 373 d~~~~~~-~~~~~~~~~--------~~~~v~~v~fspdg~~l~~gs~~~-~~~~--~dg~i~iwd~~~~~~~~~~~~~~~ 440 (616)
|+..... ....+.-.. .......++++++++.|++..... .+.. ..+.|.++|+.+++.+.++...
T Consensus 253 d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg-- 330 (386)
T 3sjl_D 253 DLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMG-- 330 (386)
T ss_dssp ECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE--
T ss_pred ECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECC--
Confidence 9975431 111111000 011245688899999988875211 0111 1368999999999999999764
Q ss_pred CCeEEEEEcCCCC-cEEEEeccCCCCceEEEecccCCCCCcEEEEecCC
Q 048012 441 CSVVQCAWHPKLN-QIFATAGDKSQGGTHILYDPRLSERGALVCVARAP 488 (616)
Q Consensus 441 ~~v~~~~~~p~~~-~l~~~~~d~~~~~~~~v~~~~~s~~g~~l~s~~~d 488 (616)
..+..|+++++++ .|+++... ++.+.|+|.+ .++.+.+....
T Consensus 331 ~~~~~lavs~D~~~~ly~tn~~---~~~VsViD~~---t~k~~~~i~~~ 373 (386)
T 3sjl_D 331 HEIDSINVSQDEKPLLYALSTG---DKTLYIHDAE---SGEELRSVNQL 373 (386)
T ss_dssp EEECEEEECSSSSCEEEEEETT---TTEEEEEETT---TCCEEEEECCC
T ss_pred CCcceEEECCCCCeEEEEEcCC---CCeEEEEECC---CCcEEEEecCC
Confidence 3578999999986 67776653 6788899986 46666555433
No 206
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.42 E-value=1.9e-11 Score=123.41 Aligned_cols=265 Identities=16% Similarity=0.133 Sum_probs=167.0
Q ss_pred EEEECCCCCEEEEEE----------cCCcEEEEeCCCCccccccceecC---CCCCCceEEEEecCCCCeEEEEeC--CC
Q 048012 154 ALAVDHSGSRVLSGS----------YDYTVRMYDFQGMNSRLQSFRQLE---PSEGHQVRNLSWSPTSDRFLCVTG--SA 218 (616)
Q Consensus 154 ~v~~sp~g~~lasgs----------~Dg~i~iwd~~~~~~~~~~~~~~~---~~~~~~v~~l~~sp~g~~l~~~s~--d~ 218 (616)
.++++|+|++|++++ .++.|.+||..+... ...+..-. ...+.....+.|+|+|++|+++.. ++
T Consensus 82 ~va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v-~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~ 160 (386)
T 3sjl_D 82 NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLP-TADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAP 160 (386)
T ss_dssp EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCE-EEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSC
T ss_pred cEEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeE-EEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCC
Confidence 399999999887775 367899999987531 11111100 001224667999999999998864 68
Q ss_pred eEEEEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEEEECCCccccceEEeeeccCCC
Q 048012 219 QAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPG 298 (616)
Q Consensus 219 ~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~ 298 (616)
.|.|+|+.+.++..... +.+ |..+.|.+...+++.+.||.+.+.++........ .........
T Consensus 161 ~VsVID~~t~~vv~tI~----------v~g------~~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~-~~~~~~~~~ 223 (386)
T 3sjl_D 161 AVGVVDLEGKAFKRMLD----------VPD------CYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEI-THTEVFHPE 223 (386)
T ss_dssp EEEEEETTTTEEEEEEE----------CCS------EEEEEEEETTEEEEEETTSCEEEEECCSSSCCEE-EECCCCSCT
T ss_pred eEEEEECCCCcEEEEEE----------CCC------cceeecCCCceeEEECCCCCEEEEECCCCCeEEE-eecceeccc
Confidence 99999999887643311 111 1223354556788888999999999876222211 111111111
Q ss_pred CccE-EEEEE-CCCCCeEEEEeCCCcEEEEeCCCCCCCCCceeeec---------C-CCCCeEEEEEcCCCCeEEEEec-
Q 048012 299 RVAV-TTCAW-DCDGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEK---------G-HSDDITALKFSSDGRILLSRSF- 365 (616)
Q Consensus 299 ~~~v-~~~~~-sp~g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~---------~-h~~~V~~l~~spdg~~l~s~s~- 365 (616)
...+ ....| .++|++++ .+.+|.|+++|+.+.. ......+. + ....+..++++++++.|+....
T Consensus 224 ~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~--~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~ 300 (386)
T 3sjl_D 224 DEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGD--AKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQ 300 (386)
T ss_dssp TSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSS--CEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEE
T ss_pred cccccccceeEcCCCcEEE-EeCCCEEEEEECCCCc--ceeecceeccccccccccccCCCcceeeECCCCCeEEEEecc
Confidence 1122 12355 46776655 5558999999997641 11111111 0 1233456788999988887653
Q ss_pred ---------CCcEEEEeCCCCCCcceEecCCCCCCcceeEEECCCCC-EEEEeeccccccCCCceEEEEeCCCCceEEEE
Q 048012 366 ---------DGSLKVWDLRKMKEPLKVFEDLPNNYAQTNVAFSPDEQ-LFLTGTSVERESTTGGLLCFYDREKLELVSRV 435 (616)
Q Consensus 366 ---------Dg~v~lwd~~~~~~~~~~~~~~~~~~~v~~v~fspdg~-~l~~gs~~~~~~~~dg~i~iwd~~~~~~~~~~ 435 (616)
.+.|.++|+.+.+. +..+.. ...+.+|+|++|++ +|++... .++.|.++|..+++.+.++
T Consensus 301 ~~~~~hk~~~~~V~viD~~t~kv-~~~i~v---g~~~~~lavs~D~~~~ly~tn~------~~~~VsViD~~t~k~~~~i 370 (386)
T 3sjl_D 301 RDEWRHKTASRFVVVLDAKTGER-LAKFEM---GHEIDSINVSQDEKPLLYALST------GDKTLYIHDAESGEELRSV 370 (386)
T ss_dssp CCTTCTTSCEEEEEEEETTTCCE-EEEEEE---EEEECEEEECSSSSCEEEEEET------TTTEEEEEETTTCCEEEEE
T ss_pred ccccccCCCCCEEEEEECCCCeE-EEEEEC---CCCcceEEECCCCCeEEEEEcC------CCCeEEEEECCCCcEEEEe
Confidence 24699999987554 333321 23478999999997 6766552 5899999999999999999
Q ss_pred ecCCCCCeEEEEEcCC
Q 048012 436 GISPACSVVQCAWHPK 451 (616)
Q Consensus 436 ~~~~~~~v~~~~~~p~ 451 (616)
... +.-+.+.++++
T Consensus 371 ~~~--~~p~~l~~s~d 384 (386)
T 3sjl_D 371 NQL--GHGPQVITTAD 384 (386)
T ss_dssp CCC--CSSCCEEEECC
T ss_pred cCC--CCCceeEECCc
Confidence 753 33455565554
No 207
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.42 E-value=9.3e-10 Score=108.37 Aligned_cols=239 Identities=10% Similarity=-0.008 Sum_probs=162.9
Q ss_pred CCceEEEEecCCCCeEEEEeCCCeEEEEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCE
Q 048012 196 GHQVRNLSWSPTSDRFLCVTGSAQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSL 275 (616)
Q Consensus 196 ~~~v~~l~~sp~g~~l~~~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v 275 (616)
...+.++.++++|..+++...++.|.+|+.. ..+..+. +..+...+.++++.+++ .++++...++.|
T Consensus 19 ~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~~-----------~~~~~~~~~~i~~~~~g-~l~v~~~~~~~v 85 (300)
T 2qc5_A 19 DSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKEFE-----------VPTPDAKVMCLIVSSLG-DIWFTENGANKI 85 (300)
T ss_dssp TCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEE-----------CSSTTCCEEEEEECTTS-CEEEEETTTTEE
T ss_pred CCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEEEE-----------CCCCCCcceeEEECCCC-CEEEEecCCCeE
Confidence 4568999999999877766678999999988 4433221 12334568899999877 577776667889
Q ss_pred EEEECCCccccceEEeeeccCCCCccEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCCCCCcee-eecCCCCCeEEEEEc
Q 048012 276 RIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWDCDGKCIAGGIGDGSIQVWNLKPGWGSRPDIH-VEKGHSDDITALKFS 354 (616)
Q Consensus 276 ~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~g~~dg~I~iwd~~~~~~~~~~~~-~~~~h~~~V~~l~~s 354 (616)
..||.. ++. ..+... .....+.+++++++|+++++...++.|..||.. + .... .+......+.++++.
T Consensus 86 ~~~d~~-g~~-~~~~~~----~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g----~~~~~~~~~~~~~~~~i~~d 154 (300)
T 2qc5_A 86 GKLSKK-GGF-TEYPLP----QPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-G----TIYEYDLPNKGSYPAFITLG 154 (300)
T ss_dssp EEECTT-SCE-EEEECS----STTCCEEEEEECSTTCEEEEETTTTEEEEECTT-S----CEEEEECSSTTCCEEEEEEC
T ss_pred EEECCC-CCe-EEecCC----CCCCCCccceECCCCCEEEEccCCCeEEEECCC-C----CEEEccCCCCCCCceeEEEC
Confidence 999987 332 222111 112368899999999988887778899999987 4 2221 223344578999999
Q ss_pred CCCCeEEEEecCCcEEEEeCCCCCCcceEecCCCCCCcceeEEECCCCCEEEEeeccccccCCCceEEEEeCCCCceEEE
Q 048012 355 SDGRILLSRSFDGSLKVWDLRKMKEPLKVFEDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREKLELVSR 434 (616)
Q Consensus 355 pdg~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~~~~~~~ 434 (616)
++|+++++...++.|..||. ++.. . .+........+..++++++|.++++.. ..+.|.+||. +++....
T Consensus 155 ~~g~l~v~~~~~~~i~~~~~-~g~~-~-~~~~~~~~~~~~~i~~d~~g~l~v~~~-------~~~~i~~~~~-~g~~~~~ 223 (300)
T 2qc5_A 155 SDNALWFTENQNNSIGRITN-TGKL-E-EYPLPTNAAAPVGITSGNDGALWFVEI-------MGNKIGRITT-TGEISEY 223 (300)
T ss_dssp TTSSEEEEETTTTEEEEECT-TCCE-E-EEECSSTTCCEEEEEECTTSSEEEEET-------TTTEEEEECT-TCCEEEE
T ss_pred CCCCEEEEecCCCeEEEECC-CCcE-E-EeeCCCCCCCcceEEECCCCCEEEEcc-------CCCEEEEEcC-CCcEEEE
Confidence 99997777766788999998 3332 2 222212234578999999998777765 5678999998 5554433
Q ss_pred EecCCCCCeEEEEEcCCCCcEEEEeccCCCCceEEEecc
Q 048012 435 VGISPACSVVQCAWHPKLNQIFATAGDKSQGGTHILYDP 473 (616)
Q Consensus 435 ~~~~~~~~v~~~~~~p~~~~l~~~~~d~~~~~~~~v~~~ 473 (616)
........+..++++++++ |+++... .+.+.+|++
T Consensus 224 ~~~~~~~~~~~i~~d~~g~-l~v~~~~---~~~i~~~~~ 258 (300)
T 2qc5_A 224 DIPTPNARPHAITAGKNSE-IWFTEWG---ANQIGRITN 258 (300)
T ss_dssp ECSSTTCCEEEEEECSTTC-EEEEETT---TTEEEEECT
T ss_pred ECCCCCCCceEEEECCCCC-EEEeccC---CCeEEEECC
Confidence 2212345689999999987 4444431 456777765
No 208
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.38 E-value=8.6e-11 Score=121.71 Aligned_cols=243 Identities=8% Similarity=0.010 Sum_probs=157.6
Q ss_pred ccEEEEEECCCCCEEEEEEcCCcEEEEeCCCCccccccceecCCCCCCceEEEEecCCCCeEEEEeCCC--eEEEEECCC
Q 048012 150 KIVSALAVDHSGSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSDRFLCVTGSA--QAKIYDRDG 227 (616)
Q Consensus 150 ~~V~~v~~sp~g~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~s~d~--~v~vwd~~~ 227 (616)
.....|+|+++|+++++...++.|++||..+... ..+ ... ..... ++|+++++.|+++..++ .|.+|+..+
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~--~~~---~~~-~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~ 203 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKV--TTV---HPG-FKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKAS 203 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEE--EEE---EET-CCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGG
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEE--EEe---ecc-CCCCc-eeEecCCCcEEEEecCCCceEEEEEcCC
Confidence 4678999999999888877789999999876421 111 111 22234 99999999998888765 788888764
Q ss_pred CeeeeEeeCceeEeecccC-CCcccceEEEEEcCCCCCEEEEEeCCCCEEEEECCCccccceEEeeeccCCCCcc--EEE
Q 048012 228 LTLGEFVKGDMYIRDLKNT-KGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPGRVA--VTT 304 (616)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~--v~~ 304 (616)
...... +... ......+.+++++|+++ .|+.+..++.|+.||..+... .+.......+.... ...
T Consensus 204 ~~~~~~---------~g~~~~~~~~~p~~iav~p~~g-~lyv~d~~~~I~~~d~~~~~~--~~~~~~~~~g~~~~~P~~~ 271 (409)
T 3hrp_A 204 GWAPTR---------IGQLGSTFSGKIGAVALDETEE-WLYFVDSNKNFGRFNVKTQEV--TLIKQLELSGSLGTNPGPY 271 (409)
T ss_dssp TTCEEE---------EEECCTTSCSCCCBCEECTTSS-EEEEECTTCEEEEEETTTCCE--EEEEECCCCSCCCCSSCCE
T ss_pred CceeEE---------eeeccchhcCCcEEEEEeCCCC-eEEEEECCCcEEEEECCCCCE--EEEecccccCCCCCCcccc
Confidence 432111 1001 11345678899999654 444477788999999976542 11111001111111 128
Q ss_pred EEECCC-CCeEEEEeCCCcEEEEeCCCCCCCCCceeeecCC---------------CCCeEEEEEcCCCCeEEEEe-cCC
Q 048012 305 CAWDCD-GKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGH---------------SDDITALKFSSDGRILLSRS-FDG 367 (616)
Q Consensus 305 ~~~sp~-g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~h---------------~~~V~~l~~spdg~~l~s~s-~Dg 367 (616)
++|+|+ +.++++-..++.|+.|+.... +..+.++ -.....|+|+++|+++++-. .++
T Consensus 272 ia~~p~~g~lyv~d~~~~~I~~~~~~g~------~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~ 345 (409)
T 3hrp_A 272 LIYYFVDSNFYMSDQNLSSVYKITPDGE------CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGY 345 (409)
T ss_dssp EEEETTTTEEEEEETTTTEEEEECTTCC------EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTC
T ss_pred EEEeCCCCEEEEEeCCCCEEEEEecCCC------EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCC
Confidence 999995 666666677889999997642 2222222 23478999999999888877 889
Q ss_pred cEEEEeCCCCCCcceEecCCC-------------CCCcceeEEECCCCCEEEEeeccccccCCCceEEEEeC
Q 048012 368 SLKVWDLRKMKEPLKVFEDLP-------------NNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDR 426 (616)
Q Consensus 368 ~v~lwd~~~~~~~~~~~~~~~-------------~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~ 426 (616)
.|+.||+.++. +..+.... .......+++++++.++++.. .++.|+.+++
T Consensus 346 ~I~~~~~~~G~--v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~-------~n~~Ir~i~~ 408 (409)
T 3hrp_A 346 CLRKLDILDGY--VSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEA-------WGKAIRKYAV 408 (409)
T ss_dssp EEEEEETTTTE--EEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEES-------TTCEEEEEEE
T ss_pred EEEEEECCCCE--EEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEEC-------CCCeEEEEEe
Confidence 99999976542 23322220 123478899999987777766 6778877764
No 209
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.35 E-value=7.7e-12 Score=126.85 Aligned_cols=176 Identities=13% Similarity=0.017 Sum_probs=126.7
Q ss_pred cEEEEEECCCCCEEEEEEcCCcEEEEeCCCCccc-------cccceecCCCCCCceEEEEecCCCCeEEEEeCCCeEEEE
Q 048012 151 IVSALAVDHSGSRVLSGSYDYTVRMYDFQGMNSR-------LQSFRQLEPSEGHQVRNLSWSPTSDRFLCVTGSAQAKIY 223 (616)
Q Consensus 151 ~V~~v~~sp~g~~lasgs~Dg~i~iwd~~~~~~~-------~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~s~d~~v~vw 223 (616)
.++.+++++...+|++|+.++ +++|++...... ..... .. .... |+.|+| ++.+|+++ .++.|++|
T Consensus 39 ~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~-~~-~lp~-V~~l~f--d~~~L~v~-~~~~l~v~ 111 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKW-EK-EIPD-VIFVCF--HGDQVLVS-TRNALYSL 111 (388)
T ss_dssp CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSE-EE-ECTT-EEEEEE--ETTEEEEE-ESSEEEEE
T ss_pred cccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceE-Ee-eCCC-eeEEEE--CCCEEEEE-cCCcEEEE
Confidence 689999999999999999985 566987543210 11111 11 1334 999999 88888888 88999999
Q ss_pred ECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEEEECCCccccceEEeeeccCCCCccEE
Q 048012 224 DRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPGRVAVT 303 (616)
Q Consensus 224 d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~ 303 (616)
|+........ ...|...+.++.+.+. .+++++.||.|.+||+.+..... . ...|+
T Consensus 112 dv~sl~~~~~------------~~~~~~~v~~i~~~~p---~~av~~~dG~L~v~dl~~~~~~~-~---------~~~Vs 166 (388)
T 1xip_A 112 DLEELSEFRT------------VTSFEKPVFQLKNVNN---TLVILNSVNDLSALDLRTKSTKQ-L---------AQNVT 166 (388)
T ss_dssp ESSSTTCEEE------------EEECSSCEEEEEECSS---EEEEEETTSEEEEEETTTCCEEE-E---------EESEE
T ss_pred EchhhhccCc------------cceeecceeeEEecCC---CEEEEECCCCEEEEEccCCcccc-c---------cCCce
Confidence 9876542111 1234455777777653 38888999999999998655421 1 11699
Q ss_pred EEEECCCCCeEEEEeCCCcEEEEeCCCCCCCCCc--eeee------c---CCCCCeEEEEEcCCCCeEEEEe
Q 048012 304 TCAWDCDGKCIAGGIGDGSIQVWNLKPGWGSRPD--IHVE------K---GHSDDITALKFSSDGRILLSRS 364 (616)
Q Consensus 304 ~~~~sp~g~~l~~g~~dg~I~iwd~~~~~~~~~~--~~~~------~---~h~~~V~~l~~spdg~~l~s~s 364 (616)
|++|+|+| ++.|..||+|++|+.... .. ...+ . +|...|.+|.|.+++.+|++=.
T Consensus 167 ~v~WSpkG--~~vg~~dg~i~~~~~~~~----~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y~ 232 (388)
T 1xip_A 167 SFDVTNSQ--LAVLLKDRSFQSFAWRNG----EMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFG 232 (388)
T ss_dssp EEEECSSE--EEEEETTSCEEEEEEETT----EEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEE
T ss_pred EEEEcCCc--eEEEEcCCcEEEEcCCCc----cccccceecCCcccccccCCCeeEEEEEEecCCeEEEEEc
Confidence 99999999 788999999999988764 21 2222 2 4778899999999998888643
No 210
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.35 E-value=1.6e-09 Score=108.68 Aligned_cols=227 Identities=14% Similarity=0.043 Sum_probs=148.2
Q ss_pred eEEEEecCCCCeE-EEEeCCCeEEEEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEE
Q 048012 199 VRNLSWSPTSDRF-LCVTGSAQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRI 277 (616)
Q Consensus 199 v~~l~~sp~g~~l-~~~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~i 277 (616)
.....|++++..| ++...++.|.+|+..+.....+. ....+.++.|.+++. ++++ +.+ .|.+
T Consensus 51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~~~--------------~~~~v~~i~~~~dg~-l~v~-~~~-gl~~ 113 (326)
T 2ghs_A 51 GEGPTFDPASGTAWWFNILERELHELHLASGRKTVHA--------------LPFMGSALAKISDSK-QLIA-SDD-GLFL 113 (326)
T ss_dssp EEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEEEE--------------CSSCEEEEEEEETTE-EEEE-ETT-EEEE
T ss_pred CcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEEEEE--------------CCCcceEEEEeCCCe-EEEE-ECC-CEEE
Confidence 5678999986554 45556789999999877643220 124688999999873 5554 444 4999
Q ss_pred EECCCccccceEEeeeccCCCCccEEEEEECCCCCeEEEEeC------CCcEEEEeCCCCCCCCCceeeecCCCCCeEEE
Q 048012 278 WDVNEFKSQKQVIKPKLARPGRVAVTTCAWDCDGKCIAGGIG------DGSIQVWNLKPGWGSRPDIHVEKGHSDDITAL 351 (616)
Q Consensus 278 wd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~g~~------dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l 351 (616)
||..+++.. .+.. .........+..++++++|+++++... .+.|..++ .+ .+..+..+......+
T Consensus 114 ~d~~~g~~~-~~~~-~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g-----~~~~~~~~~~~~~~i 184 (326)
T 2ghs_A 114 RDTATGVLT-LHAE-LESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KG-----KVTKLFADISIPNSI 184 (326)
T ss_dssp EETTTCCEE-EEEC-SSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TT-----EEEEEEEEESSEEEE
T ss_pred EECCCCcEE-EEee-CCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CC-----cEEEeeCCCcccCCe
Confidence 998765432 2211 111111236889999999997765542 24566666 33 122222233457899
Q ss_pred EEcCCCCeEEEE-ecCCcEEEEeCC--CC-CC-cceEecCC-CCCCcceeEEECCCCCEEEEeeccccccCCCceEEEEe
Q 048012 352 KFSSDGRILLSR-SFDGSLKVWDLR--KM-KE-PLKVFEDL-PNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYD 425 (616)
Q Consensus 352 ~~spdg~~l~s~-s~Dg~v~lwd~~--~~-~~-~~~~~~~~-~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd 425 (616)
+|+|+++.|+.+ +.++.|.+||+. ++ .. ....+... .....+..++++++|.++++.. .++.|.+||
T Consensus 185 ~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~-------~~~~v~~~d 257 (326)
T 2ghs_A 185 CFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARW-------GEGAVDRYD 257 (326)
T ss_dssp EECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEE-------TTTEEEEEC
T ss_pred EEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEe-------CCCEEEEEC
Confidence 999999876555 457899999986 33 11 11222211 1223467899999998877765 568899999
Q ss_pred CCCCceEEEEecCCCCCeEEEEEc-CCCCcEEEEec
Q 048012 426 REKLELVSRVGISPACSVVQCAWH-PKLNQIFATAG 460 (616)
Q Consensus 426 ~~~~~~~~~~~~~~~~~v~~~~~~-p~~~~l~~~~~ 460 (616)
. +++.+..+.. +...+.+++|. ++++.|++++.
T Consensus 258 ~-~g~~~~~i~~-~~~~~~~~af~g~d~~~L~vt~~ 291 (326)
T 2ghs_A 258 T-DGNHIARYEV-PGKQTTCPAFIGPDASRLLVTSA 291 (326)
T ss_dssp T-TCCEEEEEEC-SCSBEEEEEEESTTSCEEEEEEB
T ss_pred C-CCCEEEEEEC-CCCCcEEEEEecCCCCEEEEEec
Confidence 8 6777777765 34568999998 88888877765
No 211
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.34 E-value=3.4e-11 Score=122.12 Aligned_cols=180 Identities=8% Similarity=0.033 Sum_probs=131.2
Q ss_pred ceEEEEEcCCCCCEEEEEeCCCCEEEEECCCccccce-----EEeeeccCCCCccEEEEEECCCCCeEEEEeCCCcEEEE
Q 048012 252 GLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQ-----VIKPKLARPGRVAVTTCAWDCDGKCIAGGIGDGSIQVW 326 (616)
Q Consensus 252 ~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~~-----~~~~~~~~~~~~~v~~~~~sp~g~~l~~g~~dg~I~iw 326 (616)
.++.+++++.. .++++|+.++ +++|++........ +..... ..... |+.++| ++++|+++ .++.|++|
T Consensus 39 ~~nlLais~~~-gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~-~~lp~-V~~l~f--d~~~L~v~-~~~~l~v~ 111 (388)
T 1xip_A 39 SLQNLDISNSK-SLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWE-KEIPD-VIFVCF--HGDQVLVS-TRNALYSL 111 (388)
T ss_dssp CCBCEEEETTT-TEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEE-EECTT-EEEEEE--ETTEEEEE-ESSEEEEE
T ss_pred cccEEEEcCCC-CEEEEeCCCE-EEEEEhhHhhhhhccccccccceEE-eeCCC-eeEEEE--CCCEEEEE-cCCcEEEE
Confidence 68899999977 4889998875 66799765431000 000000 01223 999999 99999999 88999999
Q ss_pred eCCCCCCCCCceeeecCCCCCeEEEEEcCCCCeEEEEecCCcEEEEeCCCCCCcceEecCCCCCCcceeEEECCCCCEEE
Q 048012 327 NLKPGWGSRPDIHVEKGHSDDITALKFSSDGRILLSRSFDGSLKVWDLRKMKEPLKVFEDLPNNYAQTNVAFSPDEQLFL 406 (616)
Q Consensus 327 d~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~ 406 (616)
|+++. ........|...|.++.+.+. .++++..||.|.+||+.+... ... ...|++++|||+| ++
T Consensus 112 dv~sl----~~~~~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~-~~~------~~~Vs~v~WSpkG--~~ 176 (388)
T 1xip_A 112 DLEEL----SEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKST-KQL------AQNVTSFDVTNSQ--LA 176 (388)
T ss_dssp ESSST----TCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCE-EEE------EESEEEEEECSSE--EE
T ss_pred Echhh----hccCccceeecceeeEEecCC--CEEEEECCCCEEEEEccCCcc-ccc------cCCceEEEEcCCc--eE
Confidence 99875 244455677778988888765 388899999999999986542 221 2349999999999 56
Q ss_pred EeeccccccCCCceEEEEeCCCCce--EEEEec--------CCCCCeEEEEEcCCCCcEEEEec
Q 048012 407 TGTSVERESTTGGLLCFYDREKLEL--VSRVGI--------SPACSVVQCAWHPKLNQIFATAG 460 (616)
Q Consensus 407 ~gs~~~~~~~~dg~i~iwd~~~~~~--~~~~~~--------~~~~~v~~~~~~p~~~~l~~~~~ 460 (616)
.|. .||.|++|+...+++ ..++.. .+...|.++.|.+++.++++-..
T Consensus 177 vg~-------~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y~~ 233 (388)
T 1xip_A 177 VLL-------KDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFGN 233 (388)
T ss_dssp EEE-------TTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEEC
T ss_pred EEE-------cCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEEcC
Confidence 677 799999999888776 555621 24578999999999887776544
No 212
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.33 E-value=5e-10 Score=111.24 Aligned_cols=226 Identities=12% Similarity=0.138 Sum_probs=149.1
Q ss_pred ceEEEEecCCCCe-EEEEeCCCeEEEEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEE
Q 048012 198 QVRNLSWSPTSDR-FLCVTGSAQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLR 276 (616)
Q Consensus 198 ~v~~l~~sp~g~~-l~~~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~ 276 (616)
......|+++++. +++...++.|..|+..+. ...+ ..+...+..+++++++ +++++...++.|.
T Consensus 46 ~~egp~~~~~g~~l~~~d~~~~~i~~~~~~g~-~~~~-------------~~~~~~~~gl~~d~dG-~l~v~~~~~~~v~ 110 (305)
T 3dr2_A 46 WSEGPAWWEAQRTLVWSDLVGRRVLGWREDGT-VDVL-------------LDATAFTNGNAVDAQQ-RLVHCEHGRRAIT 110 (305)
T ss_dssp SEEEEEEEGGGTEEEEEETTTTEEEEEETTSC-EEEE-------------EESCSCEEEEEECTTS-CEEEEETTTTEEE
T ss_pred CccCCeEeCCCCEEEEEECCCCEEEEEeCCCC-EEEE-------------eCCCCccceeeECCCC-CEEEEECCCCEEE
Confidence 3678999999984 555566789999998543 2222 1234567899999987 4666655667899
Q ss_pred EEECCCccccceEEeeeccCCCCccEEEEEECCCCCeEEE----EeC-------------CCcEEEEeCCCCCCCCCcee
Q 048012 277 IWDVNEFKSQKQVIKPKLARPGRVAVTTCAWDCDGKCIAG----GIG-------------DGSIQVWNLKPGWGSRPDIH 339 (616)
Q Consensus 277 iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~----g~~-------------dg~I~iwd~~~~~~~~~~~~ 339 (616)
+|+.. +. ...+..... ......+..++++++|+++++ |.. .+.|+.||..++ ....
T Consensus 111 ~~~~~-g~-~~~~~~~~~-~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g----~~~~ 183 (305)
T 3dr2_A 111 RSDAD-GQ-AHLLVGRYA-GKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGS----PLQR 183 (305)
T ss_dssp EECTT-SC-EEEEECEET-TEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSC----CCEE
T ss_pred EECCC-CC-EEEEEeccC-CCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCC----cEEE
Confidence 99975 33 222221111 111124678999999998886 332 256888887654 2222
Q ss_pred eecCCCCCeEEEEEcCCCCeEEEEecC------CcEEEEeCCCCCC-cceEecCCCCCCcceeEEECCCCCEEEEeeccc
Q 048012 340 VEKGHSDDITALKFSSDGRILLSRSFD------GSLKVWDLRKMKE-PLKVFEDLPNNYAQTNVAFSPDEQLFLTGTSVE 412 (616)
Q Consensus 340 ~~~~h~~~V~~l~~spdg~~l~s~s~D------g~v~lwd~~~~~~-~~~~~~~~~~~~~v~~v~fspdg~~l~~gs~~~ 412 (616)
.. .......++|+||++.|+.+... +.|.+|++..... ....+... ....+..++++++|++.++ +
T Consensus 184 ~~--~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~-~~~~pdgi~~d~~G~lwv~-~--- 256 (305)
T 3dr2_A 184 MA--DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASV-PDGLPDGFCVDRGGWLWSS-S--- 256 (305)
T ss_dssp EE--EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECC-SSSCCCSEEECTTSCEEEC-C---
T ss_pred Ee--cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEEC-CCCCCCeEEECCCCCEEEe-c---
Confidence 22 34457899999999988777665 6899999875320 01122111 1233567999999995544 3
Q ss_pred cccCCCceEEEEeCCCCceEEEEecCCCCCeEEEEEcCCCCcEEEEec
Q 048012 413 RESTTGGLLCFYDREKLELVSRVGISPACSVVQCAWHPKLNQIFATAG 460 (616)
Q Consensus 413 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~ 460 (616)
.+| |.+|+. .++.+..+.... .+..++|.++++.|++++.
T Consensus 257 ----~~g-v~~~~~-~g~~~~~~~~~~--~~~~~~f~~d~~~L~it~~ 296 (305)
T 3dr2_A 257 ----GTG-VCVFDS-DGQLLGHIPTPG--TASNCTFDQAQQRLFITGG 296 (305)
T ss_dssp ----SSE-EEEECT-TSCEEEEEECSS--CCCEEEECTTSCEEEEEET
T ss_pred ----CCc-EEEECC-CCCEEEEEECCC--ceeEEEEeCCCCEEEEEcC
Confidence 344 999998 677888876543 5889999999988988886
No 213
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.32 E-value=1.1e-10 Score=129.71 Aligned_cols=254 Identities=10% Similarity=0.076 Sum_probs=158.2
Q ss_pred CCcccEEEEEECCCCCEEEEE-----EcCCcEEEEeCCCCccccccceecCCCCCCceEEEEecCCCCeEEEEeCCC---
Q 048012 147 GHTKIVSALAVDHSGSRVLSG-----SYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSDRFLCVTGSA--- 218 (616)
Q Consensus 147 ~H~~~V~~v~~sp~g~~lasg-----s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~s~d~--- 218 (616)
+|...|..++|||||++||-+ +...+|++||+.++......+ .......++|+ |++.|+.++.+.
T Consensus 126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~------~~~k~~~~~Ws-Dg~~l~y~~~~~~~~ 198 (693)
T 3iuj_A 126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPL------KDVKFSGISWL-GNEGFFYSSYDKPDG 198 (693)
T ss_dssp TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEE------EEEESCCCEEE-TTTEEEEEESSCCC-
T ss_pred CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcccc------CCceeccEEEe-CCCEEEEEEecCccc
Confidence 567789999999999988843 333679999998864211111 11112467899 999999988774
Q ss_pred ----------eEEEEECCCCeeeeEeeCceeEeecccCCC-cccceEEEEEcCCCCCEEEEEeCC---CCEEEEECCCcc
Q 048012 219 ----------QAKIYDRDGLTLGEFVKGDMYIRDLKNTKG-HICGLTCGEWHPKTKETILTSSED---GSLRIWDVNEFK 284 (616)
Q Consensus 219 ----------~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~~~~~p~~~~~l~s~s~D---g~v~iwd~~~~~ 284 (616)
.|++|++.+..... ..+..... |...+..+.|+|+++.++++.+.+ ..|++||+.+..
T Consensus 199 ~~~~~~~~~~~v~~~~lgt~~~~~--------~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~ 270 (693)
T 3iuj_A 199 SELSARTDQHKVYFHRLGTAQEDD--------RLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQEN 270 (693)
T ss_dssp ------CCCCEEEEEETTSCGGGC--------EEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTT
T ss_pred ccccccCCCcEEEEEECCCCcccc--------eEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCC
Confidence 48999987543210 01112233 445577899999997565665533 579999997754
Q ss_pred ccceEEeeeccCCCCccEEEEEECCCCCeEEEEe-CC---CcEEEEeCCCCCCCCCceeeecCCCCCeEEEEEcCCCCeE
Q 048012 285 SQKQVIKPKLARPGRVAVTTCAWDCDGKCIAGGI-GD---GSIQVWNLKPGWGSRPDIHVEKGHSDDITALKFSSDGRIL 360 (616)
Q Consensus 285 ~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~g~-~d---g~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l 360 (616)
.....+.... ...... |+++|..|+..+ .+ +.|.++|+.++. ......+..|...+. .|+++++.|
T Consensus 271 ~~~~~l~~~~-----~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~--~~~~~~l~~~~~~~~--~~s~~g~~l 340 (693)
T 3iuj_A 271 APLLTVQGDL-----DADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPG--PAHWRDLIPERQQVL--TVHSGSGYL 340 (693)
T ss_dssp CCCEEEECSS-----SSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCC--GGGCEEEECCCSSCE--EEEEETTEE
T ss_pred CceEEEeCCC-----CceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCC--ccccEEEecCCCCEE--EEEEECCEE
Confidence 2222221111 123333 556666555444 33 579999998751 112344556666665 889999888
Q ss_pred EEEecCC---cEEEEeCCCCCCcceEecCCCCCCcceeEEECCCCCEEEEeeccccccCCCceEEEEeCCCCce
Q 048012 361 LSRSFDG---SLKVWDLRKMKEPLKVFEDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREKLEL 431 (616)
Q Consensus 361 ~s~s~Dg---~v~lwd~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~~~~ 431 (616)
+....++ .|++||+.. +. ...+. .+....+..+.+++++..|+...+. ...-+.|+.||+.+++.
T Consensus 341 v~~~~~~g~~~l~~~d~~g-~~-~~~l~-~p~~~~~~~~~~~~d~~~l~~~~ss---~~tP~~l~~~d~~~g~~ 408 (693)
T 3iuj_A 341 FAEYMVDATARVEQFDYEG-KR-VREVA-LPGLGSVSGFNGKHDDPALYFGFEN---YAQPPTLYRFEPKSGAI 408 (693)
T ss_dssp EEEEEETTEEEEEEECTTS-CE-EEEEC-CSSSSEEEECCCCTTCSCEEEEEEC---SSSCCEEEEECTTTCCE
T ss_pred EEEEEECCeeEEEEEECCC-Ce-eEEee-cCCCceEEeeecCCCCCEEEEEecC---CCCCCEEEEEECCCCeE
Confidence 8776544 688999873 22 23332 2333446677888888877665420 01347899999988764
No 214
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.31 E-value=2.3e-09 Score=105.99 Aligned_cols=242 Identities=10% Similarity=0.043 Sum_probs=154.8
Q ss_pred eEEecCCcccEEEEEECCCC-CEEEEEEcCCcEEEEeCCCCccccccceecCCCCCCceEEEEecCCCCeEEEEeCCCeE
Q 048012 142 EIVLKGHTKIVSALAVDHSG-SRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSDRFLCVTGSAQA 220 (616)
Q Consensus 142 ~~~l~~H~~~V~~v~~sp~g-~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~s~d~~v 220 (616)
+..+..+..-.-+..|++++ .++++...++.|+.||..+... ..+ .....+.+++|+++|++++ +. +..|
T Consensus 5 ~~~~~~~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~--~~~-----~~~~~~~~i~~~~dG~l~v-~~-~~~l 75 (297)
T 3g4e_A 5 ECVLPENCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQV--QRV-----TMDAPVSSVALRQSGGYVA-TI-GTKF 75 (297)
T ss_dssp EEEECCCCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCE--EEE-----ECSSCEEEEEEBTTSSEEE-EE-TTEE
T ss_pred EEEeccCCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcE--EEE-----eCCCceEEEEECCCCCEEE-EE-CCeE
Confidence 34455566677788999964 5666666789999999876432 111 1234699999999999444 44 6789
Q ss_pred EEEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeC---------CCCEEEEECCCccccceEEe
Q 048012 221 KIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSE---------DGSLRIWDVNEFKSQKQVIK 291 (616)
Q Consensus 221 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~---------Dg~v~iwd~~~~~~~~~~~~ 291 (616)
.+||..+..+..+... . .......++.+++.|++. ++++... .....||.+........+..
T Consensus 76 ~~~d~~~g~~~~~~~~-------~-~~~~~~~~~di~~d~dG~-l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~ 146 (297)
T 3g4e_A 76 CALNWKEQSAVVLATV-------D-NDKKNNRFNDGKVDPAGR-YFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFD 146 (297)
T ss_dssp EEEETTTTEEEEEEEC-------C-TTCSSEEEEEEEECTTSC-EEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEE
T ss_pred EEEECCCCcEEEEEec-------C-CCCCCCCCCCEEECCCCC-EEEecCCcccccccccCCCcEEEEEECCCCEEEEee
Confidence 9999987765433211 0 011234578999999885 5554422 13345665543222222211
Q ss_pred eeccCCCCccEEEEEECCCCCeEE-EEeCCCcEEEEeCC--CCCCC-CCceeeecCCCCCeEEEEEcCCCCeEEEEecCC
Q 048012 292 PKLARPGRVAVTTCAWDCDGKCIA-GGIGDGSIQVWNLK--PGWGS-RPDIHVEKGHSDDITALKFSSDGRILLSRSFDG 367 (616)
Q Consensus 292 ~~~~~~~~~~v~~~~~sp~g~~l~-~g~~dg~I~iwd~~--~~~~~-~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg 367 (616)
. . ...+.++|+|+++.|+ +.+.++.|.+|++. ++... ...+..+..+......+++.++|++.++....+
T Consensus 147 ~-~-----~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~ 220 (297)
T 3g4e_A 147 Q-V-----DISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGG 220 (297)
T ss_dssp E-E-----SBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTT
T ss_pred c-c-----ccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCC
Confidence 1 1 1467899999998665 45567899999874 33100 011222233445688999999999888887888
Q ss_pred cEEEEeCCCCCCcceEecCCCCCCcceeEEEC-CCCCEEEEeec
Q 048012 368 SLKVWDLRKMKEPLKVFEDLPNNYAQTNVAFS-PDEQLFLTGTS 410 (616)
Q Consensus 368 ~v~lwd~~~~~~~~~~~~~~~~~~~v~~v~fs-pdg~~l~~gs~ 410 (616)
.|.+||..+++ .+..+... ...+++++|. |+++.|++++.
T Consensus 221 ~v~~~d~~tG~-~~~~i~~p--~~~~t~~~f~g~d~~~L~vt~~ 261 (297)
T 3g4e_A 221 RVIRLDPVTGK-RLQTVKLP--VDKTTSCCFGGKNYSEMYVTCA 261 (297)
T ss_dssp EEEEECTTTCC-EEEEEECS--SSBEEEEEEESGGGCEEEEEEB
T ss_pred EEEEEcCCCce-EEEEEECC--CCCceEEEEeCCCCCEEEEEcC
Confidence 99999987644 34444332 2348999998 89888777763
No 215
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.29 E-value=1.5e-10 Score=118.98 Aligned_cols=252 Identities=13% Similarity=0.102 Sum_probs=161.0
Q ss_pred EEEECCCCCEEEEEE----------cCCcEEEEeCCCCccccccceec-CC--CCCCceEEEEecCCCCeEEEEeC--CC
Q 048012 154 ALAVDHSGSRVLSGS----------YDYTVRMYDFQGMNSRLQSFRQL-EP--SEGHQVRNLSWSPTSDRFLCVTG--SA 218 (616)
Q Consensus 154 ~v~~sp~g~~lasgs----------~Dg~i~iwd~~~~~~~~~~~~~~-~~--~~~~~v~~l~~sp~g~~l~~~s~--d~ 218 (616)
.++++|+|++|+.+. .++.|.++|..+... ...+..- .. ..+.....+.|+|+|++|+++.. ++
T Consensus 122 gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~v-v~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~ 200 (426)
T 3c75_H 122 HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLP-IADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAP 200 (426)
T ss_dssp EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCE-EEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSC
T ss_pred ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcE-EEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCC
Confidence 799999999888876 367899999887532 1111110 00 01223567899999999998874 57
Q ss_pred eEEEEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEEEECCCccccceEEeeeccCCC
Q 048012 219 QAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPG 298 (616)
Q Consensus 219 ~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~ 298 (616)
.|.++|..+.++..... ..+ +....|++...+++.+.||.+.+.++.+++..... ........
T Consensus 201 ~VsVID~~t~kvv~~I~----------v~g------~~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~-~~~~~v~~ 263 (426)
T 3c75_H 201 AVGVVDLEGKTFDRMLD----------VPD------CYHIFPASPTVFYMNCRDGSLARVDFADGETKVTN-TEVFHTED 263 (426)
T ss_dssp EEEEEETTTTEEEEEEE----------CCS------EEEEEEEETTEEEEEETTSSEEEEECCTTCCEEEE-CCCCSCTT
T ss_pred eEEEEECCCCeEEEEEE----------cCC------ceeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEe-eeeeccCC
Confidence 99999999887643211 111 12344555567788888898888888443322111 00000011
Q ss_pred CccEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCCCCCceeeec---C-------CCCCeEEEEEcCCCCeEEEEec---
Q 048012 299 RVAVTTCAWDCDGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEK---G-------HSDDITALKFSSDGRILLSRSF--- 365 (616)
Q Consensus 299 ~~~v~~~~~sp~g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~---~-------h~~~V~~l~~spdg~~l~s~s~--- 365 (616)
......+.|.+++..++.....+.|.+.|+.... ...+..+. . .......++|+++++.|++...
T Consensus 264 ~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~--~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~ 341 (426)
T 3c75_H 264 ELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEG--ATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRD 341 (426)
T ss_dssp SCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSC--EEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECC
T ss_pred CceeeEeeecCCCCEEEEEeCCCcEEEEeccCCc--eEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccc
Confidence 1011235678998888888888999999986531 00111110 0 0112234789999887777642
Q ss_pred -------CCcEEEEeCCCCCCcceEecCCCCCCcceeEEECCCCC-EEEEeeccccccCCCceEEEEeCCCCceEEEE
Q 048012 366 -------DGSLKVWDLRKMKEPLKVFEDLPNNYAQTNVAFSPDEQ-LFLTGTSVERESTTGGLLCFYDREKLELVSRV 435 (616)
Q Consensus 366 -------Dg~v~lwd~~~~~~~~~~~~~~~~~~~v~~v~fspdg~-~l~~gs~~~~~~~~dg~i~iwd~~~~~~~~~~ 435 (616)
.+.|.++|+.+.+. +..+.. ......++|+|||+ ++++... .++.|.++|+.+++.+.++
T Consensus 342 ~gthk~~s~~VsVID~~T~kv-v~~I~v---g~~P~gia~spDg~~~lyv~n~------~s~~VsVID~~t~kvv~tI 409 (426)
T 3c75_H 342 EWKHKAASRFVVVLNAETGER-INKIEL---GHEIDSINVSQDAEPLLYALSA------GTQTLHIYDAATGEELRSV 409 (426)
T ss_dssp TTCTTSCEEEEEEEETTTCCE-EEEEEE---EEEECEEEECCSSSCEEEEEET------TTTEEEEEETTTCCEEEEE
T ss_pred cccccCCCCEEEEEECCCCeE-EEEEEC---CCCcCeEEEccCCCEEEEEEcC------CCCeEEEEECCCCCEEEEe
Confidence 35799999987543 333321 22378899999999 8887762 4899999999999999987
No 216
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.28 E-value=9.1e-10 Score=122.40 Aligned_cols=246 Identities=12% Similarity=0.077 Sum_probs=159.0
Q ss_pred CCCceEEEEecCCCCeEEEEeC-----CCeEEEEECCCCeeeeEeeCceeEeecccCCCcccc--eEEEEEcCCCCCEEE
Q 048012 195 EGHQVRNLSWSPTSDRFLCVTG-----SAQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICG--LTCGEWHPKTKETIL 267 (616)
Q Consensus 195 ~~~~v~~l~~sp~g~~l~~~s~-----d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~--v~~~~~~p~~~~~l~ 267 (616)
+...+..++|||+|++|+.+.. ...|+|||+.+++.... +... ...++|+ |++ .|+
T Consensus 127 ~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~---------------~~~~~k~~~~~Ws-Dg~-~l~ 189 (693)
T 3iuj_A 127 GTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLET---------------PLKDVKFSGISWL-GNE-GFF 189 (693)
T ss_dssp SCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEE---------------EEEEEESCCCEEE-TTT-EEE
T ss_pred CcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcc---------------ccCCceeccEEEe-CCC-EEE
Confidence 3446889999999999886542 25799999998764221 1112 2467899 885 666
Q ss_pred EEeCCC-------------CEEEEECCCccccceEEeeeccCC-CCccEEEEEECCCCCeEEEEeC----CCcEEEEeCC
Q 048012 268 TSSEDG-------------SLRIWDVNEFKSQKQVIKPKLARP-GRVAVTTCAWDCDGKCIAGGIG----DGSIQVWNLK 329 (616)
Q Consensus 268 s~s~Dg-------------~v~iwd~~~~~~~~~~~~~~~~~~-~~~~v~~~~~sp~g~~l~~g~~----dg~I~iwd~~ 329 (616)
.++.+. .|++|++.+.......+... .. +...+..+.|+|+|++|+.... ...|++||+.
T Consensus 190 y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~--~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~ 267 (693)
T 3iuj_A 190 YSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGA--IPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLS 267 (693)
T ss_dssp EEESSCCC-------CCCCEEEEEETTSCGGGCEEEESC--SGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETT
T ss_pred EEEecCcccccccccCCCcEEEEEECCCCcccceEEEec--CCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECC
Confidence 666664 39999998765433332221 11 2224678999999998865543 2489999997
Q ss_pred CCCCCCCceeeecCCCCCeEEEEEcCCCCeEEEEe-cC---CcEEEEeCCCCCC-cceEecCCCCCCcceeEEECCCCCE
Q 048012 330 PGWGSRPDIHVEKGHSDDITALKFSSDGRILLSRS-FD---GSLKVWDLRKMKE-PLKVFEDLPNNYAQTNVAFSPDEQL 404 (616)
Q Consensus 330 ~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s-~D---g~v~lwd~~~~~~-~~~~~~~~~~~~~v~~v~fspdg~~ 404 (616)
++. .....+..+....... |+++|..|+..+ .+ +.|.+||+.+... ..+.+..+.. .+. .|++++++
T Consensus 268 ~~~---~~~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~--~~~--~~s~~g~~ 339 (693)
T 3iuj_A 268 QEN---APLLTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQ--QVL--TVHSGSGY 339 (693)
T ss_dssp STT---CCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCS--SCE--EEEEETTE
T ss_pred CCC---CceEEEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCC--CEE--EEEEECCE
Confidence 642 2344455566666555 666666555444 33 5799999986542 1233333322 233 89999998
Q ss_pred EEEeeccccccCCCc--eEEEEeCCCCceEEEEecCCCCCeEEEEEcCCCCcEEEEeccCCCCceEEEeccc
Q 048012 405 FLTGTSVERESTTGG--LLCFYDREKLELVSRVGISPACSVVQCAWHPKLNQIFATAGDKSQGGTHILYDPR 474 (616)
Q Consensus 405 l~~gs~~~~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~~~~~~~v~~~~ 474 (616)
|+.... .++ .|++|++. +.....+.....+.+..+.+++++..|+....+......+..|++.
T Consensus 340 lv~~~~------~~g~~~l~~~d~~-g~~~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~ 404 (693)
T 3iuj_A 340 LFAEYM------VDATARVEQFDYE-GKRVREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPK 404 (693)
T ss_dssp EEEEEE------ETTEEEEEEECTT-SCEEEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTT
T ss_pred EEEEEE------ECCeeEEEEEECC-CCeeEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECC
Confidence 887763 333 78999987 4456667665556678888999998888776643334566666654
No 217
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.27 E-value=5.4e-10 Score=114.92 Aligned_cols=291 Identities=11% Similarity=0.017 Sum_probs=176.0
Q ss_pred CCCCEEEEEEcC-----CcEEEEeCCCCccccccceecCCCCCCceEEEEecCCCCeEEEEe----------CCCeEEEE
Q 048012 159 HSGSRVLSGSYD-----YTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSDRFLCVT----------GSAQAKIY 223 (616)
Q Consensus 159 p~g~~lasgs~D-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~s----------~d~~v~vw 223 (616)
+++.++++.... +.|.++|..+... ...+.. ...+ .+.++|+|++|+++. .++.|.++
T Consensus 82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~v----v~~I~v-G~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~Vsvi 154 (426)
T 3c75_H 82 PDARRVYIQDPAHFAAITQQFVIDGSTGRI----LGMTDG-GFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVF 154 (426)
T ss_dssp CCTTEEEEEECTTTCSSEEEEEEETTTTEE----EEEEEE-CSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEE
T ss_pred CCCCEEEEECCCcCCCCCeEEEEECCCCEE----EEEEEC-CCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEE
Confidence 355555554442 6899999887531 122221 2233 899999999998886 36789999
Q ss_pred ECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeC--CCCEEEEECCCccccceEEeeeccCCCCcc
Q 048012 224 DRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSE--DGSLRIWDVNEFKSQKQVIKPKLARPGRVA 301 (616)
Q Consensus 224 d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~--Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~ 301 (616)
|..+.++.....-.. .. ..........+.|+|+++ +|+++.. +++|.+.|+.+.+....+... +
T Consensus 155 D~~t~~vv~~I~v~g----~~-r~~~g~~P~~~~~spDGk-~lyV~n~~~~~~VsVID~~t~kvv~~I~v~-----g--- 220 (426)
T 3c75_H 155 DPVTFLPIADIELPD----AP-RFLVGTYQWMNALTPDNK-NLLFYQFSPAPAVGVVDLEGKTFDRMLDVP-----D--- 220 (426)
T ss_dssp CTTTCCEEEEEEETT----CC-CCCBSCCGGGSEECTTSS-EEEEEECSSSCEEEEEETTTTEEEEEEECC-----S---
T ss_pred ECCCCcEEEEEECCC----cc-ccccCCCcceEEEcCCCC-EEEEEecCCCCeEEEEECCCCeEEEEEEcC-----C---
Confidence 998876533211000 00 000012234678999986 5555543 678999999987765554321 1
Q ss_pred EEEEEECCCC-CeEEEEeCCCcEEEEeCCCCCCCCCcee----eecCCCCC-eEEEEEcCCCCeEEEEecCCcEEEEeCC
Q 048012 302 VTTCAWDCDG-KCIAGGIGDGSIQVWNLKPGWGSRPDIH----VEKGHSDD-ITALKFSSDGRILLSRSFDGSLKVWDLR 375 (616)
Q Consensus 302 v~~~~~sp~g-~~l~~g~~dg~I~iwd~~~~~~~~~~~~----~~~~h~~~-V~~l~~spdg~~l~s~s~Dg~v~lwd~~ 375 (616)
. ....|++ +.+++.+.||.+.+.++..+ .... .+.....+ ...+.|.+++..++..+..+.|.+.|+.
T Consensus 221 ~--~~~~p~g~~~~v~~~~dG~~~~V~~~~~----~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~ 294 (426)
T 3c75_H 221 C--YHIFPASPTVFYMNCRDGSLARVDFADG----ETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLT 294 (426)
T ss_dssp E--EEEEEEETTEEEEEETTSSEEEEECCTT----CCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEEC
T ss_pred c--eeeccCCCcEEEEEcCCCCEEEEECCCC----cEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEecc
Confidence 1 1222332 45566677888777777443 2221 11111112 1246789998888877888999999986
Q ss_pred CCCCc-ceEecCC-----C---CCCcceeEEECCCCCEEEEeecccc-cc--CCCceEEEEeCCCCceEEEEecCCCCCe
Q 048012 376 KMKEP-LKVFEDL-----P---NNYAQTNVAFSPDEQLFLTGTSVER-ES--TTGGLLCFYDREKLELVSRVGISPACSV 443 (616)
Q Consensus 376 ~~~~~-~~~~~~~-----~---~~~~v~~v~fspdg~~l~~gs~~~~-~~--~~dg~i~iwd~~~~~~~~~~~~~~~~~v 443 (616)
..... +..+... . .......++|+|++++|++...... +. ...+.|.++|+.+++.+.++... ...
T Consensus 295 ~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg--~~P 372 (426)
T 3c75_H 295 AEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELG--HEI 372 (426)
T ss_dssp SSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE--EEE
T ss_pred CCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEECC--CCc
Confidence 43210 0111100 0 0011234799999998887752110 00 02468999999999999999764 347
Q ss_pred EEEEEcCCCC-cEEEEeccCCCCceEEEecccCCCCCcEEEE
Q 048012 444 VQCAWHPKLN-QIFATAGDKSQGGTHILYDPRLSERGALVCV 484 (616)
Q Consensus 444 ~~~~~~p~~~-~l~~~~~d~~~~~~~~v~~~~~s~~g~~l~s 484 (616)
..++|+|+++ .++++... ++.+.|+|++ .++.+.+
T Consensus 373 ~gia~spDg~~~lyv~n~~---s~~VsVID~~---t~kvv~t 408 (426)
T 3c75_H 373 DSINVSQDAEPLLYALSAG---TQTLHIYDAA---TGEELRS 408 (426)
T ss_dssp CEEEECCSSSCEEEEEETT---TTEEEEEETT---TCCEEEE
T ss_pred CeEEEccCCCEEEEEEcCC---CCeEEEEECC---CCCEEEE
Confidence 8899999998 78877753 7788888876 3555433
No 218
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.26 E-value=1.3e-09 Score=108.29 Aligned_cols=232 Identities=13% Similarity=0.049 Sum_probs=148.4
Q ss_pred EecCCcccEEEEEECCCCC-EEEEEEcCCcEEEEeCCCCccccccceecCCCCCCceEEEEecCCCCeEEEEeCCCeEEE
Q 048012 144 VLKGHTKIVSALAVDHSGS-RVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSDRFLCVTGSAQAKI 222 (616)
Q Consensus 144 ~l~~H~~~V~~v~~sp~g~-~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~s~d~~v~v 222 (616)
.+..+........|+++|+ +++++..++.|..|+..+. ...+. .....+..++|+++|+++++...++.|.+
T Consensus 39 ~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~g~---~~~~~----~~~~~~~gl~~d~dG~l~v~~~~~~~v~~ 111 (305)
T 3dr2_A 39 TLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWREDGT---VDVLL----DATAFTNGNAVDAQQRLVHCEHGRRAITR 111 (305)
T ss_dssp EEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEETTSC---EEEEE----ESCSCEEEEEECTTSCEEEEETTTTEEEE
T ss_pred EEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeCCCC---EEEEe----CCCCccceeeECCCCCEEEEECCCCEEEE
Confidence 4555666788899999998 6667777899999987432 11121 23445899999999986665556689999
Q ss_pred EECCCCeeeeEeeCceeEeecccCCC-cccceEEEEEcCCCCCEEEE----EeC-------------CCCEEEEECCCcc
Q 048012 223 YDRDGLTLGEFVKGDMYIRDLKNTKG-HICGLTCGEWHPKTKETILT----SSE-------------DGSLRIWDVNEFK 284 (616)
Q Consensus 223 wd~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~~~~~p~~~~~l~s----~s~-------------Dg~v~iwd~~~~~ 284 (616)
|+.++ .+..+.. ...+ ....++.+++.+++ .++++ |.. .+.|..||..+++
T Consensus 112 ~~~~g-~~~~~~~---------~~~~~~~~~~~~i~~d~dG-~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~ 180 (305)
T 3dr2_A 112 SDADG-QAHLLVG---------RYAGKRLNSPNDLIVARDG-AIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSP 180 (305)
T ss_dssp ECTTS-CEEEEEC---------EETTEECSCCCCEEECTTS-CEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCC
T ss_pred ECCCC-CEEEEEe---------ccCCCccCCCCCEEECCCC-CEEEeCcCCCccccccccccccccCCCeEEEEcCCCCc
Confidence 99873 3322210 0111 12356789999987 46665 332 2457777765543
Q ss_pred ccceEEeeeccCCCCccEEEEEECCCCCeEEEEeCC------CcEEEEeCCCCCCCCCceeeecCCCCCeEEEEEcCCCC
Q 048012 285 SQKQVIKPKLARPGRVAVTTCAWDCDGKCIAGGIGD------GSIQVWNLKPGWGSRPDIHVEKGHSDDITALKFSSDGR 358 (616)
Q Consensus 285 ~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~g~~d------g~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~ 358 (616)
.. .+. ... ....++|+|+++.|+++... +.|++|++..+. .................|++.++|+
T Consensus 181 ~~-~~~--~~~-----~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~-l~~~~~~~~~~~~~pdgi~~d~~G~ 251 (305)
T 3dr2_A 181 LQ-RMA--DLD-----HPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGA-LHDRRHFASVPDGLPDGFCVDRGGW 251 (305)
T ss_dssp CE-EEE--EES-----SEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTE-EEEEEEEECCSSSCCCSEEECTTSC
T ss_pred EE-EEe--cCC-----CCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCC-ccCCeEEEECCCCCCCeEEECCCCC
Confidence 32 222 111 46789999999988877665 789999987531 0000011111234466799999999
Q ss_pred eEEEEecCCcEEEEeCCCCCCcceEecCCCCCCcceeEEECCCCCEEEEee
Q 048012 359 ILLSRSFDGSLKVWDLRKMKEPLKVFEDLPNNYAQTNVAFSPDEQLFLTGT 409 (616)
Q Consensus 359 ~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~gs 409 (616)
+.++. .+ .|.+|+.. + ..+..+.. +. .+.+++|+++++.|++++
T Consensus 252 lwv~~-~~-gv~~~~~~-g-~~~~~~~~-~~--~~~~~~f~~d~~~L~it~ 295 (305)
T 3dr2_A 252 LWSSS-GT-GVCVFDSD-G-QLLGHIPT-PG--TASNCTFDQAQQRLFITG 295 (305)
T ss_dssp EEECC-SS-EEEEECTT-S-CEEEEEEC-SS--CCCEEEECTTSCEEEEEE
T ss_pred EEEec-CC-cEEEECCC-C-CEEEEEEC-CC--ceeEEEEeCCCCEEEEEc
Confidence 55544 44 49999984 3 33444432 22 388999999999888887
No 219
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.26 E-value=5.8e-10 Score=112.80 Aligned_cols=241 Identities=10% Similarity=0.059 Sum_probs=144.3
Q ss_pred CceEEEEecCCCCeEEEEeC--CCeEEEEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeC---
Q 048012 197 HQVRNLSWSPTSDRFLCVTG--SAQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSE--- 271 (616)
Q Consensus 197 ~~v~~l~~sp~g~~l~~~s~--d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~--- 271 (616)
..+..++++++|+.+++... ++.++||.++...+..+... .....+|...+..+++.+++ .++++-..
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~~~~p~~------~~~~~~~~~~p~gv~~d~~g-~L~v~D~g~~~ 89 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGLIPFPPQ------SGNAIITFDTVLGIKSDGNG-IVWMLDNGNQS 89 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEEEESCCC------CSSCCCCCSCEEEEEECSSS-EEEEEECHHHH
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCeecCCCc------ccCcccceeEeeEEEEcCCC-cEEEEcCCCCc
Confidence 45889999999998877642 34255555543333222100 01234567789999999986 35554433
Q ss_pred --CCCEEEEECCCccccceEEeeeccCCCCccEEEEEECCCCCeE-EEEe---CCCcEEEEeCCCCCCCCCceeeecCC-
Q 048012 272 --DGSLRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWDCDGKCI-AGGI---GDGSIQVWNLKPGWGSRPDIHVEKGH- 344 (616)
Q Consensus 272 --Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l-~~g~---~dg~I~iwd~~~~~~~~~~~~~~~~h- 344 (616)
+..|.+||+.+++....+............+..+++++++..+ ++.. .++.|.+||+.++ .....+..|
T Consensus 90 ~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g----~~~r~~~~~~ 165 (343)
T 2qe8_A 90 KSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTG----LAARVLQGYP 165 (343)
T ss_dssp TSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTC----CEEEECTTCT
T ss_pred CCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCC----CEEEEecCCC
Confidence 5789999998766444443221111222346889999865444 5544 5789999998765 222222211
Q ss_pred ----------------------------CCCeEEEEEcCCCCeEEEEecCC-cEEEEeCCC---CCC-------cceEec
Q 048012 345 ----------------------------SDDITALKFSSDGRILLSRSFDG-SLKVWDLRK---MKE-------PLKVFE 385 (616)
Q Consensus 345 ----------------------------~~~V~~l~~spdg~~l~s~s~Dg-~v~lwd~~~---~~~-------~~~~~~ 385 (616)
...+..|+|+|+|+.|+.+..++ .|..++... ... .+..+.
T Consensus 166 ~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g 245 (343)
T 2qe8_A 166 GIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYS 245 (343)
T ss_dssp TTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEE
T ss_pred cccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecc
Confidence 12368899999999998888766 444444321 100 011111
Q ss_pred CCCCCCcceeEEECCCCCEEEEeeccccccCCCceEEEEeCCCCceEEEEecCCCCCeEEEEEcCCCCcEEEE
Q 048012 386 DLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREKLELVSRVGISPACSVVQCAWHPKLNQIFAT 458 (616)
Q Consensus 386 ~~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~ 458 (616)
.......++++++|.++++.. .++.|.+||..+++............+..|+|.+++..+++.
T Consensus 246 ---~~g~pdgia~d~~G~l~va~~-------~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~~~g~l~v~~ 308 (343)
T 2qe8_A 246 ---EKPICDGISIDKDHNIYVGDL-------AHSAIGVITSADRAYKLLVTDEKLSWTDSFNFGSDGYLYFDC 308 (343)
T ss_dssp ---ECCSCSCEEECTTCCEEEEEG-------GGTEEEEEETTTTEEEEEEECGGGSCEEEEEECTTSCEEEEE
T ss_pred ---cCCCCceEEECCCCCEEEEcc-------CCCeEEEEECCCCCEEEEEECCceecCCeeEECCCCcEEEEe
Confidence 112356799999999888877 788999999866664333322213446777777765444433
No 220
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.24 E-value=1.7e-08 Score=101.06 Aligned_cols=237 Identities=13% Similarity=0.069 Sum_probs=146.5
Q ss_pred EecCCcccEEEEEECCCCC-EEEEEEcCCcEEEEeCCCCccccccceecCCCCCCceEEEEecCCCCeEEEEeCCCeEEE
Q 048012 144 VLKGHTKIVSALAVDHSGS-RVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSDRFLCVTGSAQAKI 222 (616)
Q Consensus 144 ~l~~H~~~V~~v~~sp~g~-~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~s~d~~v~v 222 (616)
.+........+++|+|++. ++++...++.|.+||..+... ..+ . ....+.++.|+++|+++++ +. ..|.+
T Consensus 43 ~~~~~~~~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~--~~~---~--~~~~v~~i~~~~dg~l~v~-~~-~gl~~ 113 (326)
T 2ghs_A 43 LDETPMLLGEGPTFDPASGTAWWFNILERELHELHLASGRK--TVH---A--LPFMGSALAKISDSKQLIA-SD-DGLFL 113 (326)
T ss_dssp EECSCCSBEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEE--EEE---E--CSSCEEEEEEEETTEEEEE-ET-TEEEE
T ss_pred eeccCCCCCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcE--EEE---E--CCCcceEEEEeCCCeEEEE-EC-CCEEE
Confidence 3433344567889999754 566666788999999876421 111 1 1246999999999886664 43 45999
Q ss_pred EECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCC----CCEEEEECCCccccceEEeeeccCCC
Q 048012 223 YDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSED----GSLRIWDVNEFKSQKQVIKPKLARPG 298 (616)
Q Consensus 223 wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~D----g~v~iwd~~~~~~~~~~~~~~~~~~~ 298 (616)
||..+..+..+.. .. .......++++.++|++. ++++...+ ....||.+.+++ ...+.. ..
T Consensus 114 ~d~~~g~~~~~~~-------~~-~~~~~~~~~~i~~d~~G~-l~v~~~~~~~~~~~~~l~~~~~g~-~~~~~~-~~---- 178 (326)
T 2ghs_A 114 RDTATGVLTLHAE-------LE-SDLPGNRSNDGRMHPSGA-LWIGTMGRKAETGAGSIYHVAKGK-VTKLFA-DI---- 178 (326)
T ss_dssp EETTTCCEEEEEC-------SS-TTCTTEEEEEEEECTTSC-EEEEEEETTCCTTCEEEEEEETTE-EEEEEE-EE----
T ss_pred EECCCCcEEEEee-------CC-CCCCCCCCCCEEECCCCC-EEEEeCCCcCCCCceEEEEEeCCc-EEEeeC-CC----
Confidence 9987766533211 00 011234688999999884 55544321 233444433322 222211 11
Q ss_pred CccEEEEEECCCCCeEEEE-eCCCcEEEEeCC--CC-CCC-CCceeeecCCCCCeEEEEEcCCCCeEEEEecCCcEEEEe
Q 048012 299 RVAVTTCAWDCDGKCIAGG-IGDGSIQVWNLK--PG-WGS-RPDIHVEKGHSDDITALKFSSDGRILLSRSFDGSLKVWD 373 (616)
Q Consensus 299 ~~~v~~~~~sp~g~~l~~g-~~dg~I~iwd~~--~~-~~~-~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~v~lwd 373 (616)
.....++|+++|+.|+.+ +.++.|.+||+. ++ ... ...+..+......+..+++.++|+++++...++.|.+||
T Consensus 179 -~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d 257 (326)
T 2ghs_A 179 -SIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYD 257 (326)
T ss_dssp -SSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEEC
T ss_pred -cccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEEC
Confidence 146789999999876555 457899999986 33 101 111222333445678999999999888777778999999
Q ss_pred CCCCCCcceEecCCCCCCcceeEEEC-CCCCEEEEee
Q 048012 374 LRKMKEPLKVFEDLPNNYAQTNVAFS-PDEQLFLTGT 409 (616)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~v~~v~fs-pdg~~l~~gs 409 (616)
.. + ..+..+... ...+++++|+ ++++.|++++
T Consensus 258 ~~-g-~~~~~i~~~--~~~~~~~af~g~d~~~L~vt~ 290 (326)
T 2ghs_A 258 TD-G-NHIARYEVP--GKQTTCPAFIGPDASRLLVTS 290 (326)
T ss_dssp TT-C-CEEEEEECS--CSBEEEEEEESTTSCEEEEEE
T ss_pred CC-C-CEEEEEECC--CCCcEEEEEecCCCCEEEEEe
Confidence 84 3 334444322 2348999998 8988777665
No 221
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.23 E-value=5.8e-09 Score=107.94 Aligned_cols=206 Identities=9% Similarity=-0.003 Sum_probs=132.5
Q ss_pred ceEEEEecCCCCeEEEEeCCCeEEEEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCC--CE
Q 048012 198 QVRNLSWSPTSDRFLCVTGSAQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDG--SL 275 (616)
Q Consensus 198 ~v~~l~~sp~g~~l~~~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg--~v 275 (616)
....|+|+++++.+++...++.|++||..+..+..+... ..... ++|++++. .|+++..++ .|
T Consensus 132 ~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~-------------~~~~~-ia~~~~g~-~l~~~d~~~~~~I 196 (409)
T 3hrp_A 132 YMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPG-------------FKGGK-PAVTKDKQ-RVYSIGWEGTHTV 196 (409)
T ss_dssp CEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEET-------------CCBCB-CEECTTSS-EEEEEBSSTTCEE
T ss_pred CceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeecc-------------CCCCc-eeEecCCC-cEEEEecCCCceE
Confidence 588999999998777777779999999998776443211 11223 88999874 777777665 78
Q ss_pred EEEECCCccccceEEeeeccCCCCccEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCCCCCceee----ecCCCCCe--E
Q 048012 276 RIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWDCDGKCIAGGIGDGSIQVWNLKPGWGSRPDIHV----EKGHSDDI--T 349 (616)
Q Consensus 276 ~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~----~~~h~~~V--~ 349 (616)
.+|+.........+-. ........+.+++++|++..|+++..++.|+.||..++ ..... ..++...- .
T Consensus 197 ~~~d~~~~~~~~~~g~--~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~----~~~~~~~~~~~g~~~~~P~~ 270 (409)
T 3hrp_A 197 YVYMKASGWAPTRIGQ--LGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQ----EVTLIKQLELSGSLGTNPGP 270 (409)
T ss_dssp EEEEGGGTTCEEEEEE--CCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTC----CEEEEEECCCCSCCCCSSCC
T ss_pred EEEEcCCCceeEEeee--ccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCC----CEEEEecccccCCCCCCccc
Confidence 8888765432222211 00101225678999995555555777889999999865 11111 22222222 3
Q ss_pred EEEEcCC-CCeEEEEecCCcEEEEeCCCCCCcceEecCCC-------------CCCcceeEEECCCCCEEEEeecccccc
Q 048012 350 ALKFSSD-GRILLSRSFDGSLKVWDLRKMKEPLKVFEDLP-------------NNYAQTNVAFSPDEQLFLTGTSVERES 415 (616)
Q Consensus 350 ~l~~spd-g~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~-------------~~~~v~~v~fspdg~~l~~gs~~~~~~ 415 (616)
.|+|+|+ +.++++-..++.|+.|+.... +..+.... .......++|+++|+++++-..
T Consensus 271 ~ia~~p~~g~lyv~d~~~~~I~~~~~~g~---~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~----- 342 (409)
T 3hrp_A 271 YLIYYFVDSNFYMSDQNLSSVYKITPDGE---CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGF----- 342 (409)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEECTTCC---EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETT-----
T ss_pred cEEEeCCCCEEEEEeCCCCEEEEEecCCC---EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCC-----
Confidence 9999994 666666677889999997632 22222211 0123788999999996655420
Q ss_pred CCCceEEEEeCCCCceEE
Q 048012 416 TTGGLLCFYDREKLELVS 433 (616)
Q Consensus 416 ~~dg~i~iwd~~~~~~~~ 433 (616)
.++.|+.|++.++....
T Consensus 343 -~~~~I~~~~~~~G~v~~ 359 (409)
T 3hrp_A 343 -KGYCLRKLDILDGYVST 359 (409)
T ss_dssp -TTCEEEEEETTTTEEEE
T ss_pred -CCCEEEEEECCCCEEEE
Confidence 36789999988776443
No 222
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.18 E-value=3.9e-09 Score=106.68 Aligned_cols=250 Identities=8% Similarity=-0.037 Sum_probs=153.2
Q ss_pred ccEEEEEECCCCCEEEEEEc--CCcEEEEeCCCCcccccccee---cCCCCCCceEEEEecCCCCeEEEEeC-----CCe
Q 048012 150 KIVSALAVDHSGSRVLSGSY--DYTVRMYDFQGMNSRLQSFRQ---LEPSEGHQVRNLSWSPTSDRFLCVTG-----SAQ 219 (616)
Q Consensus 150 ~~V~~v~~sp~g~~lasgs~--Dg~i~iwd~~~~~~~~~~~~~---~~~~~~~~v~~l~~sp~g~~l~~~s~-----d~~ 219 (616)
..+..|+++++|+++++... ++.++||.+..+ .+..+.. ....+-..+..++|+++++++++-.. +..
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g--~~~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~ 94 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQD--GLIPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPK 94 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETT--EEEESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCE
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEECCC--CeecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCe
Confidence 68999999999999888642 343666766422 1221111 11123346999999999876555444 579
Q ss_pred EEEEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEe---CCCCEEEEECCCccccceEEee-ec-
Q 048012 220 AKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSS---EDGSLRIWDVNEFKSQKQVIKP-KL- 294 (616)
Q Consensus 220 v~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s---~Dg~v~iwd~~~~~~~~~~~~~-~~- 294 (616)
|.+||+.+.++...... -.....+...+..++++++++.++++.. .++.|.+||+.+++....+... ..
T Consensus 95 i~~~d~~tg~~~~~~~~------~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~ 168 (343)
T 2qe8_A 95 LVAWDTLNNQLSRVIYL------PPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIA 168 (343)
T ss_dssp EEEEETTTTEEEEEEEC------CTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTS
T ss_pred EEEEECCCCeEEEEEEC------ChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCccc
Confidence 99999987764322110 0011223456789999986655666665 6789999999765432211000 00
Q ss_pred -------cCC--------------CCccEEEEEECCCCCeEEEEeCCC-cEEEEeCC---CCCCC-CCcee--eecCCCC
Q 048012 295 -------ARP--------------GRVAVTTCAWDCDGKCIAGGIGDG-SIQVWNLK---PGWGS-RPDIH--VEKGHSD 346 (616)
Q Consensus 295 -------~~~--------------~~~~v~~~~~sp~g~~l~~g~~dg-~I~iwd~~---~~~~~-~~~~~--~~~~h~~ 346 (616)
..+ -...+..++|+|+|+.|+++..++ .|+.++.. .+... ..... ...++..
T Consensus 169 ~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g 248 (343)
T 2qe8_A 169 PEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKP 248 (343)
T ss_dssp CCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECC
T ss_pred ccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCC
Confidence 000 012468899999999888887766 45555432 11000 00000 1113344
Q ss_pred CeEEEEEcCCCCeEEEEecCCcEEEEeCCCCCCcceEecCCCCCCcceeEEECCCCCEEEEee
Q 048012 347 DITALKFSSDGRILLSRSFDGSLKVWDLRKMKEPLKVFEDLPNNYAQTNVAFSPDEQLFLTGT 409 (616)
Q Consensus 347 ~V~~l~~spdg~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~gs 409 (616)
....|+++++|+++++...++.|.+||..++. +..+...+....+++++|.++++++++.+
T Consensus 249 ~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~--~~~~~~~~~~~~p~~va~~~~g~l~v~~~ 309 (343)
T 2qe8_A 249 ICDGISIDKDHNIYVGDLAHSAIGVITSADRA--YKLLVTDEKLSWTDSFNFGSDGYLYFDCN 309 (343)
T ss_dssp SCSCEEECTTCCEEEEEGGGTEEEEEETTTTE--EEEEEECGGGSCEEEEEECTTSCEEEEEC
T ss_pred CCceEEECCCCCEEEEccCCCeEEEEECCCCC--EEEEEECCceecCCeeEECCCCcEEEEeC
Confidence 56789999999999999899999999984332 22222222234588999999998888876
No 223
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.14 E-value=7.5e-10 Score=111.94 Aligned_cols=257 Identities=14% Similarity=0.031 Sum_probs=156.0
Q ss_pred EEEECCCCCEEEEEE----------cCCcEEEEeCCCCccccccceecCCC---CCCceEEEEecCCCCeEEEEeC--CC
Q 048012 154 ALAVDHSGSRVLSGS----------YDYTVRMYDFQGMNSRLQSFRQLEPS---EGHQVRNLSWSPTSDRFLCVTG--SA 218 (616)
Q Consensus 154 ~v~~sp~g~~lasgs----------~Dg~i~iwd~~~~~~~~~~~~~~~~~---~~~~v~~l~~sp~g~~l~~~s~--d~ 218 (616)
.+.|+|+|++|+++. .+++|.+||..+... ...+..-... .+.....+.|+|+|++|+++.. +.
T Consensus 69 ~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~v-v~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~ 147 (368)
T 1mda_H 69 LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLP-IADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSA 147 (368)
T ss_dssp EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCE-EEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSC
T ss_pred ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCE-EEEEECCCccccccCCCcceEEEcCCCCEEEEEccCCCC
Confidence 699999999988886 378899999987542 2222110000 1133567999999999998874 46
Q ss_pred eEEE--EECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEEEECCC-----ccccceEEe
Q 048012 219 QAKI--YDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNE-----FKSQKQVIK 291 (616)
Q Consensus 219 ~v~v--wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~-----~~~~~~~~~ 291 (616)
.|.+ +|..+ +... . ..+ |..+.|++...+++.+.|+.+.+.|+.+ ++......
T Consensus 148 ~v~V~~iD~~t--v~~i----------~-v~~------~~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t- 207 (368)
T 1mda_H 148 AAGLSVPGASD--DQLT----------K-SAS------CFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCT- 207 (368)
T ss_dssp EEEEEETTTEE--EEEE----------E-CSS------CCCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSC-
T ss_pred eEEEEEEchhh--ceEE----------E-CCC------ceEEccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEee-
Confidence 7888 88765 2111 0 011 1123455666777788899998888876 22211000
Q ss_pred eeccCCCCccEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCCCCCceeeecC-------C---CCCeEEEEEcCCCCeEE
Q 048012 292 PKLARPGRVAVTTCAWDCDGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKG-------H---SDDITALKFSSDGRILL 361 (616)
Q Consensus 292 ~~~~~~~~~~v~~~~~sp~g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~-------h---~~~V~~l~~spdg~~l~ 361 (616)
.....+..+. + .+++..++..+. +.|.+.|+... ....+..+.. + ......++|++|++.|+
T Consensus 208 -~~i~vg~~P~---~-~~~~~~~~~vs~-~~V~viD~~~~--~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~ly 279 (368)
T 1mda_H 208 -GAQNCSSQAA---Q-ANYPGMLVWAVA-SSILQGDIPAA--GATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIM 279 (368)
T ss_dssp -TTSCBCSCCE---E-ETTTTEEEECBS-SCCEEEECCSS--CCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEE
T ss_pred -eeeeCCCCcc---c-cccCCEEEEEcC-CEEEEEECCCC--cceEEEEEEeccccccccccccCcceeeEEcCCCCEEE
Confidence 0011112233 3 455565555556 99999998653 1111111110 1 11122378999999888
Q ss_pred EEec---------CCcEEEEeCCCCCCcceEecCCCCCCcceeEEECCCCCEEEEeeccccccCCCceEEEEeCCCCceE
Q 048012 362 SRSF---------DGSLKVWDLRKMKEPLKVFEDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREKLELV 432 (616)
Q Consensus 362 s~s~---------Dg~v~lwd~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~~~~~ 432 (616)
.+.. ++.+.++|+.+.+. +..+. -......++|+|||++++++.. ..++.|.++|+.+++.+
T Consensus 280 V~~~~~~~~~~~~~~~~~ViD~~t~~v-v~~i~---vg~~p~gi~~s~Dg~~l~va~~-----~~~~~VsVID~~t~kvv 350 (368)
T 1mda_H 280 ILTVEHSRSCLAAAENTSSVTASVGQT-SGPIS---NGHDSDAIIAAQDGASDNYANS-----AGTEVLDIYDAASDQDQ 350 (368)
T ss_dssp EEEEECSSCTTSCEEEEEEEESSSCCE-EECCE---EEEEECEEEECCSSSCEEEEEE-----TTTTEEEEEESSSCEEE
T ss_pred EEeccccCcccccCCCEEEEECCCCeE-EEEEE---CCCCcceEEECCCCCEEEEEcc-----CCCCeEEEEECCCCcEE
Confidence 6543 23566999987543 33322 2234788999999986555541 02799999999999999
Q ss_pred EEEecCCCCCeEEEEEcC
Q 048012 433 SRVGISPACSVVQCAWHP 450 (616)
Q Consensus 433 ~~~~~~~~~~v~~~~~~p 450 (616)
.++... .....+++++
T Consensus 351 ~~I~vg--~~P~~i~~~~ 366 (368)
T 1mda_H 351 SSVELD--KGPESLSVQN 366 (368)
T ss_dssp EECCCC--SCCCEEECCC
T ss_pred EEEECC--CCCCEEEeec
Confidence 998653 3355666654
No 224
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=99.06 E-value=1e-07 Score=92.30 Aligned_cols=257 Identities=7% Similarity=-0.062 Sum_probs=155.5
Q ss_pred CEEEEEEcCCcEEEEeCCCCccccccceecCCCCCCceEEEEecCCCCeEEEEe-CCCeEEEEECCCCeeeeEeeCceeE
Q 048012 162 SRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSDRFLCVT-GSAQAKIYDRDGLTLGEFVKGDMYI 240 (616)
Q Consensus 162 ~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~s-~d~~v~vwd~~~~~~~~~~~~~~~~ 240 (616)
.+|+.+.. +.|+.+++.+..................+..++|++++..|+.+. ..+.|.+++.++.....+.
T Consensus 2 ~~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~------ 74 (267)
T 1npe_A 2 THLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTII------ 74 (267)
T ss_dssp EEEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEE------
T ss_pred cEEEEEcC-CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEE------
Confidence 44555543 478888887643211000111111123478999999777666555 5689999999876532221
Q ss_pred eecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEEEECCCccccceEEeeeccCCCCccEEEEEECCCCCeEEEEeC-
Q 048012 241 RDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWDCDGKCIAGGIG- 319 (616)
Q Consensus 241 ~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~g~~- 319 (616)
.........++++++++.++++....+.|.++++.... ...+.. ..-.....++++|++..|+.+..
T Consensus 75 ------~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~-~~~~~~-----~~~~~P~~i~vd~~~g~lyv~~~~ 142 (267)
T 1npe_A 75 ------RQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQ-RRVLFD-----TGLVNPRGIVTDPVRGNLYWTDWN 142 (267)
T ss_dssp ------CTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-CEEEEC-----SSCSSEEEEEEETTTTEEEEEECC
T ss_pred ------ECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCC-EEEEEE-----CCCCCccEEEEeeCCCEEEEEECC
Confidence 11224568899999766667777777899999986432 222211 11125688999997665555543
Q ss_pred --CCcEEEEeCCCCCCCCCceeeecCCCCCeEEEEEcCCCCeEEEE-ecCCcEEEEeCCCCCCcceEecCCCCCCcceeE
Q 048012 320 --DGSIQVWNLKPGWGSRPDIHVEKGHSDDITALKFSSDGRILLSR-SFDGSLKVWDLRKMKEPLKVFEDLPNNYAQTNV 396 (616)
Q Consensus 320 --dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~-s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~v~~v 396 (616)
.+.|..+++... ...............|++++++..|+.+ ...+.|.++|+... .....+.. ......+
T Consensus 143 ~~~~~I~~~~~dg~----~~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~-~~~~~~~~---~~~P~gi 214 (267)
T 1npe_A 143 RDNPKIETSHMDGT----NRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQP-GRRKVLEG---LQYPFAV 214 (267)
T ss_dssp SSSCEEEEEETTSC----CCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEE-EEEEEEEC---CCSEEEE
T ss_pred CCCcEEEEEecCCC----CcEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCC-ceEEEecC---CCCceEE
Confidence 368888888643 1111111223457899999987665544 45678999998742 22222222 1224566
Q ss_pred EECCCCCEEEEeeccccccCCCceEEEEeCCCCceEEEEecCCCCCeEEEEEcCCCC
Q 048012 397 AFSPDEQLFLTGTSVERESTTGGLLCFYDREKLELVSRVGISPACSVVQCAWHPKLN 453 (616)
Q Consensus 397 ~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~ 453 (616)
++. +..|+.+.. ..+.|.++|..+++.+..+..........+++.|++.
T Consensus 215 ~~d--~~~lyva~~------~~~~v~~~d~~~g~~~~~i~~g~~~~p~gi~~~~~~~ 263 (267)
T 1npe_A 215 TSY--GKNLYYTDW------KTNSVIAMDLAISKEMDTFHPHKQTRLYGITIALSQC 263 (267)
T ss_dssp EEE--TTEEEEEET------TTTEEEEEETTTTEEEEEECCSSCCCCCCEEEECSCC
T ss_pred EEe--CCEEEEEEC------CCCeEEEEeCCCCCceEEEccccccccceeeecCccC
Confidence 654 455555542 5689999999999999888653323466777777753
No 225
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=98.99 E-value=4.1e-08 Score=99.77 Aligned_cols=234 Identities=12% Similarity=0.094 Sum_probs=141.8
Q ss_pred CCCCEEEE-EEcCCcEEEEeCCCCccccccceecC------CCCCCceEEEEecCCCCeEEEEeCC------CeEEEEEC
Q 048012 159 HSGSRVLS-GSYDYTVRMYDFQGMNSRLQSFRQLE------PSEGHQVRNLSWSPTSDRFLCVTGS------AQAKIYDR 225 (616)
Q Consensus 159 p~g~~las-gs~Dg~i~iwd~~~~~~~~~~~~~~~------~~~~~~v~~l~~sp~g~~l~~~s~d------~~v~vwd~ 225 (616)
.++++|+. |..++.|.|+|+.+.....+..+.+. .........+..+|+| .++++.++ +.|.++|.
T Consensus 93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~ 171 (462)
T 2ece_A 93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDH 171 (462)
T ss_dssp CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECT
T ss_pred ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEEC
Confidence 77776665 55678999999975433333333331 1111245677888999 76666665 78999999
Q ss_pred CCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEe-------------------CCCCEEEEECCCcccc
Q 048012 226 DGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSS-------------------EDGSLRIWDVNEFKSQ 286 (616)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s-------------------~Dg~v~iwd~~~~~~~ 286 (616)
.+.++...... -.+....-..+.|+|+++ .+++.. ...+|.+||+.+.+..
T Consensus 172 ~T~~v~~~~~~---------~~~~~~~~Yd~~~~p~~~-~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~ 241 (462)
T 2ece_A 172 YSFEPLGKWEI---------DRGDQYLAYDFWWNLPNE-VLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRI 241 (462)
T ss_dssp TTCCEEEECCS---------BCTTCCCCCCEEEETTTT-EEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEE
T ss_pred CCCeEEEEEcc---------CCCCccccceEEECCCCC-EEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEe
Confidence 87775433211 111112234578899874 777774 3688999999875433
Q ss_pred ceEEeeeccCCCCccEEEEEE--CCCCCeEEEEe------CCCcEEEEeCCCCCCCCCceeee--cC-------------
Q 048012 287 KQVIKPKLARPGRVAVTTCAW--DCDGKCIAGGI------GDGSIQVWNLKPGWGSRPDIHVE--KG------------- 343 (616)
Q Consensus 287 ~~~~~~~~~~~~~~~v~~~~~--sp~g~~l~~g~------~dg~I~iwd~~~~~~~~~~~~~~--~~------------- 343 (616)
..+... .. ......+.| +|+++++++++ .+++|.+|....+ .......+ ..
T Consensus 242 ~tI~vg---~~-g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g--~~~~~~vIdi~~~~v~~~lp~~~~~ 315 (462)
T 2ece_A 242 HSLTLG---EE-NRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDG--KWNAEKVIEIPAEPLEGNLPEILKP 315 (462)
T ss_dssp EEEESC---TT-EEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETT--EEEEEEEEEECCEECCSSCCGGGGG
T ss_pred eEEecC---CC-CCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCC--ceeEEEEEeCCCccccccccccccc
Confidence 333221 01 113444544 99999988877 4668877655432 11111110 00
Q ss_pred ---CCCCeEEEEEcCCCCeEEEEec-CCcEEEEeCCCCCCc--ceEecCC------------CCCCcceeEEECCCCCEE
Q 048012 344 ---HSDDITALKFSSDGRILLSRSF-DGSLKVWDLRKMKEP--LKVFEDL------------PNNYAQTNVAFSPDEQLF 405 (616)
Q Consensus 344 ---h~~~V~~l~~spdg~~l~s~s~-Dg~v~lwd~~~~~~~--~~~~~~~------------~~~~~v~~v~fspdg~~l 405 (616)
-......|.+|+||++|+++.. .+.|.+||+.....+ +..+... ........++++|||++|
T Consensus 316 f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~L 395 (462)
T 2ece_A 316 FKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRV 395 (462)
T ss_dssp GTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEE
T ss_pred cccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEE
Confidence 0235788999999999887774 689999999643322 1111110 001136889999999999
Q ss_pred EEee
Q 048012 406 LTGT 409 (616)
Q Consensus 406 ~~gs 409 (616)
+++.
T Consensus 396 yVaN 399 (462)
T 2ece_A 396 YVTN 399 (462)
T ss_dssp EEEC
T ss_pred EEEc
Confidence 9987
No 226
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=98.97 E-value=2.6e-08 Score=109.92 Aligned_cols=284 Identities=12% Similarity=0.071 Sum_probs=167.6
Q ss_pred CCCEEEEEEcCCcEEEEeCCCCccccccceecCCCCCCceEEEEecCCCCeEEEEeC------CCeEEEEECCCCe-eee
Q 048012 160 SGSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSDRFLCVTG------SAQAKIYDRDGLT-LGE 232 (616)
Q Consensus 160 ~g~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~s~------d~~v~vwd~~~~~-~~~ 232 (616)
.+.+|+.++.|+.|..+|..++......-..........+.+.-.- .+..+++++. ++.|+.||..+++ ++.
T Consensus 127 ~~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~~p~v-~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~ 205 (677)
T 1kb0_A 127 WKGKVYVGAWDGRLIALDAATGKEVWHQNTFEGQKGSLTITGAPRV-FKGKVIIGNGGAEYGVRGYITAYDAETGERKWR 205 (677)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEE-ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEE
T ss_pred ECCEEEEEcCCCEEEEEECCCCCEEeeecCCcCcCcCcccccCcEE-ECCEEEEEecccccCCCCEEEEEECCCCcEEEE
Confidence 3568888899999999999876543221110000000111110000 2345555553 6899999987554 444
Q ss_pred EeeCceeEeec----------ccCC---------CcccceEEEEEcCCCCCEEEEEeCCC-------------------C
Q 048012 233 FVKGDMYIRDL----------KNTK---------GHICGLTCGEWHPKTKETILTSSEDG-------------------S 274 (616)
Q Consensus 233 ~~~~~~~~~~~----------~~~~---------~h~~~v~~~~~~p~~~~~l~s~s~Dg-------------------~ 274 (616)
+.......... .... +.......+.+.|++ .+|+.+..++ +
T Consensus 206 ~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~-~~vy~~~~~~~~w~~~~~~~~~gd~~~~~s 284 (677)
T 1kb0_A 206 WFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAEL-NTMYVGTGNGSPWSHKVRSPKGGDNLYLAS 284 (677)
T ss_dssp EESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTT-TEEEEECCCEESSCHHHHSTTCCCCTTTTE
T ss_pred eccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCC-CEEEEECCCCccccCCCCCccCCCCeeeEE
Confidence 43221110000 0000 111222457788876 4777776654 4
Q ss_pred EEEEECCCccccceEEeeecc---CCCCccEEEEEECCCC---CeEEEEeCCCcEEEEeCCCCCCCCCceeeecCC----
Q 048012 275 LRIWDVNEFKSQKQVIKPKLA---RPGRVAVTTCAWDCDG---KCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGH---- 344 (616)
Q Consensus 275 v~iwd~~~~~~~~~~~~~~~~---~~~~~~v~~~~~sp~g---~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~h---- 344 (616)
|..+|..+++....+...... .........+....+| ..|+.++.+|.|+++|..++. .+......
T Consensus 285 v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~----~l~~~~~~~~~~ 360 (677)
T 1kb0_A 285 IVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGK----FISAKNFVPVNW 360 (677)
T ss_dssp EEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCC----EEEEEESSCCSS
T ss_pred EEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCC----EeccccccccCc
Confidence 999999988766655432110 0000112222333467 688999999999999999873 22221100
Q ss_pred -------CCC------------------------eEEEEEcCCCCeEEEEecC---------------------------
Q 048012 345 -------SDD------------------------ITALKFSSDGRILLSRSFD--------------------------- 366 (616)
Q Consensus 345 -------~~~------------------------V~~l~~spdg~~l~s~s~D--------------------------- 366 (616)
... -..++|+|++.+|++...+
T Consensus 361 ~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 440 (677)
T 1kb0_A 361 ASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGW 440 (677)
T ss_dssp EEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTC
T ss_pred ccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeeccccccccccccccccccccc
Confidence 000 1257899988888876432
Q ss_pred ----------------CcEEEEeCCCCCCcceEecCCCCCCcceeEEECCCCCEEEEeeccccccCCCceEEEEeCCCCc
Q 048012 367 ----------------GSLKVWDLRKMKEPLKVFEDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREKLE 430 (616)
Q Consensus 367 ----------------g~v~lwd~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~~~ 430 (616)
|.|..||+.+++...+.-. ...+....+..++.++++++ .+|.|++||+.+++
T Consensus 441 ~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~----~~~~~~g~~~~~g~~v~~g~-------~dg~l~a~D~~tG~ 509 (677)
T 1kb0_A 441 NTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEH----VSPWNGGTLTTAGNVVFQGT-------ADGRLVAYHAATGE 509 (677)
T ss_dssp CCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEE----SSSCCCCEEEETTTEEEEEC-------TTSEEEEEETTTCC
T ss_pred ccccccccccCCCCCccEEEEEeCCCCcEEeecCC----CCCCcCcceEeCCCEEEEEC-------CCCcEEEEECCCCc
Confidence 7799999987654333221 22244556777888899888 89999999999999
Q ss_pred eEEEEecCCCCCeEEEEEcCCCCcEEEEec
Q 048012 431 LVSRVGISPACSVVQCAWHPKLNQIFATAG 460 (616)
Q Consensus 431 ~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~ 460 (616)
.+.++.........-+.|..+++++++...
T Consensus 510 ~lw~~~~~~~~~~~p~~y~~~G~~~v~~~~ 539 (677)
T 1kb0_A 510 KLWEAPTGTGVVAAPSTYMVDGRQYVSVAV 539 (677)
T ss_dssp EEEEEECSSCCCSCCEEEEETTEEEEEEEE
T ss_pred eeeeeeCCCCcccCCEEEEeCCEEEEEEec
Confidence 999998765544556677788876666543
No 227
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=98.92 E-value=1.7e-07 Score=95.26 Aligned_cols=244 Identities=12% Similarity=0.069 Sum_probs=149.5
Q ss_pred CCCCCEEEEEeCCCCEEEEECCCccccceEEeee----cc-CCCCccEEEEEECCCCCeEEEEeCC------CcEEEEeC
Q 048012 260 PKTKETILTSSEDGSLRIWDVNEFKSQKQVIKPK----LA-RPGRVAVTTCAWDCDGKCIAGGIGD------GSIQVWNL 328 (616)
Q Consensus 260 p~~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~----~~-~~~~~~v~~~~~sp~g~~l~~g~~d------g~I~iwd~ 328 (616)
.+.+.+++++..+++|.|+|+.+....-.+.... .. ..+......+...|+| +++++..+ |.|.++|.
T Consensus 93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~ 171 (462)
T 2ece_A 93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDH 171 (462)
T ss_dssp CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECT
T ss_pred ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEEC
Confidence 6676777888889999999997542222222211 00 0111134567788999 66666555 78999999
Q ss_pred CCCCCCCCceeeecCCC---CCeEEEEEcCCCCeEEEEe-------------------cCCcEEEEeCCCCCCcceEecC
Q 048012 329 KPGWGSRPDIHVEKGHS---DDITALKFSSDGRILLSRS-------------------FDGSLKVWDLRKMKEPLKVFED 386 (616)
Q Consensus 329 ~~~~~~~~~~~~~~~h~---~~V~~l~~spdg~~l~s~s-------------------~Dg~v~lwd~~~~~~~~~~~~~ 386 (616)
.+. ..+..+.... .--+.+.|+|+++.|++.. ...+|.+||+.+. ..+..+..
T Consensus 172 ~T~----~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~-k~~~tI~v 246 (462)
T 2ece_A 172 YSF----EPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKR-KRIHSLTL 246 (462)
T ss_dssp TTC----CEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTT-EEEEEEES
T ss_pred CCC----eEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCC-cEeeEEec
Confidence 876 4555554221 2234688899999999885 3689999999864 44555443
Q ss_pred CCCCCcceeEEE--CCCCCEEEEeeccccccCCCceEEEEeCCCCc--eEEEEecCC-----------------CCCeEE
Q 048012 387 LPNNYAQTNVAF--SPDEQLFLTGTSVERESTTGGLLCFYDREKLE--LVSRVGISP-----------------ACSVVQ 445 (616)
Q Consensus 387 ~~~~~~v~~v~f--spdg~~l~~gs~~~~~~~~dg~i~iwd~~~~~--~~~~~~~~~-----------------~~~v~~ 445 (616)
-........+.| +|+++++++++.... ...++.|.+|....++ ..+.+.+.. ......
T Consensus 247 g~~g~~P~~i~f~~~Pdg~~aYV~~e~~~-~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~ 325 (462)
T 2ece_A 247 GEENRMALELRPLHDPTKLMGFINMVVSL-KDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTD 325 (462)
T ss_dssp CTTEEEEEEEEECSSTTCCEEEEEEEEET-TTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCC
T ss_pred CCCCCccceeEeeECCCCCEEEEEEeeec-cCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeE
Confidence 212233556656 999999998872110 0024677776654442 222221111 234678
Q ss_pred EEEcCCCCcEEEEeccCCCCceEEEecccCCCCCcEEEEecCCcceeccc--------ccCCceeeCCCCCCcccC
Q 048012 446 CAWHPKLNQIFATAGDKSQGGTHILYDPRLSERGALVCVARAPRKKSVDD--------FEVAPVIHNPHALPLFRD 513 (616)
Q Consensus 446 ~~~~p~~~~l~~~~~d~~~~~~~~v~~~~~s~~g~~l~s~~~d~~~~~wd--------~~~~~~~~~p~~~~l~~~ 513 (616)
+.+++++++|+++... .+.+.+|++.-....+++......+.+..-+ .....+.++|++..|+-.
T Consensus 326 I~lS~DGrfLYVSnrg---~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVa 398 (462)
T 2ece_A 326 IDISLDDKFLYLSLWG---IGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVT 398 (462)
T ss_dssp EEECTTSCEEEEEETT---TTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEE
T ss_pred EEECCCCCEEEEEeCC---CCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEE
Confidence 9999999999999985 6789999986333345554444333221111 124557788888777654
No 228
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=98.91 E-value=1.7e-08 Score=102.07 Aligned_cols=268 Identities=5% Similarity=-0.154 Sum_probs=152.6
Q ss_pred cEEEEeCCCCccccccceecCCCCCCceEEEEecCCCCeEEEEe----------CCCeEEEEECCCCeeeeEeeCceeEe
Q 048012 172 TVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSDRFLCVT----------GSAQAKIYDRDGLTLGEFVKGDMYIR 241 (616)
Q Consensus 172 ~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~s----------~d~~v~vwd~~~~~~~~~~~~~~~~~ 241 (616)
+|.++|..+... ...+... ..+ .+.|+|++++++++. .++.|.+||..+.++........
T Consensus 47 ~vsvID~~t~~v----~~~i~vG-~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~--- 116 (368)
T 1mda_H 47 ENWVSCAGCGVT----LGHSLGA-FLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPD--- 116 (368)
T ss_dssp EEEEEETTTTEE----EEEEEEC-TTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETT---
T ss_pred eEEEEECCCCeE----EEEEeCC-CCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCC---
Confidence 788999876531 2222222 233 799999999999886 36899999999877543311000
Q ss_pred ecccCCCcccceEEEEEcCCCCCEEEEEeC-CCCEEE--EECCCccccceEEeeeccCCCCccEEEEEECCCC-CeEEEE
Q 048012 242 DLKNTKGHICGLTCGEWHPKTKETILTSSE-DGSLRI--WDVNEFKSQKQVIKPKLARPGRVAVTTCAWDCDG-KCIAGG 317 (616)
Q Consensus 242 ~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~-Dg~v~i--wd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g-~~l~~g 317 (616)
.-+... ......+.++|+++.++++... +..|.+ +|+.+ ...+.. ++ |+.+.|+| +.+++.
T Consensus 117 ~~~~~~--g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v-----~~-----~~~~~p~g~~~~~~~ 181 (368)
T 1mda_H 117 APRFSV--GPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKS-----AS-----CFHIHPGAAATHYLG 181 (368)
T ss_dssp SCSCCB--SCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEEC-----SS-----CCCCEEEETTEEECC
T ss_pred cccccc--CCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEEC-----CC-----ceEEccCCCeEEEEE
Confidence 000000 1234578999999754444433 456888 88876 222211 11 01122343 344556
Q ss_pred eCCCcEEEEeCCCCCCC-CCce----eeecCCCCCeEEEEEcCCCCeEEEEecCCcEEEEeCCCCCC-cceEecCCC---
Q 048012 318 IGDGSIQVWNLKPGWGS-RPDI----HVEKGHSDDITALKFSSDGRILLSRSFDGSLKVWDLRKMKE-PLKVFEDLP--- 388 (616)
Q Consensus 318 ~~dg~I~iwd~~~~~~~-~~~~----~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~v~lwd~~~~~~-~~~~~~~~~--- 388 (616)
+.||.+.+.|+...... .... ..+.....+. . ++++..++..+. +.|.+.|+..... .+..+....
T Consensus 182 ~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~---~-~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~ 256 (368)
T 1mda_H 182 SCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAA---Q-ANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGR 256 (368)
T ss_dssp CCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCE---E-ETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHH
T ss_pred cCCCCEEEEECccccccCCeEEEEeeeeeeCCCCcc---c-cccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccc
Confidence 67888888887751000 0111 0111112333 3 566666666666 9999999864321 111111000
Q ss_pred -----CCCcceeEEECCCCCEEEEeec-c-ccccCCCceEEEEeCCCCceEEEEecCCCCCeEEEEEcCCCCcEEEEec-
Q 048012 389 -----NNYAQTNVAFSPDEQLFLTGTS-V-ERESTTGGLLCFYDREKLELVSRVGISPACSVVQCAWHPKLNQIFATAG- 460 (616)
Q Consensus 389 -----~~~~v~~v~fspdg~~l~~gs~-~-~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~- 460 (616)
.......++|+|++++++++.. . ......++.+.++|+.+++.+.++... .....++|+|+++.+++++.
T Consensus 257 ~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg--~~p~gi~~s~Dg~~l~va~~~ 334 (368)
T 1mda_H 257 KADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNG--HDSDAIIAAQDGASDNYANSA 334 (368)
T ss_dssp HHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEE--EEECEEEECCSSSCEEEEEET
T ss_pred cccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECC--CCcceEEECCCCCEEEEEccC
Confidence 0011233789999999887651 0 000000235669999999999988764 35788999999987766665
Q ss_pred cCCCCceEEEeccc
Q 048012 461 DKSQGGTHILYDPR 474 (616)
Q Consensus 461 d~~~~~~~~v~~~~ 474 (616)
. .+.+.|+|++
T Consensus 335 ~---~~~VsVID~~ 345 (368)
T 1mda_H 335 G---TEVLDIYDAA 345 (368)
T ss_dssp T---TTEEEEEESS
T ss_pred C---CCeEEEEECC
Confidence 2 6788888876
No 229
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=98.88 E-value=1.4e-07 Score=104.12 Aligned_cols=281 Identities=12% Similarity=0.100 Sum_probs=164.3
Q ss_pred CCEEEEEEcCCcEEEEeCCCCccccccceecCCCCCCceEEEEecC--CCCeEEEEe------CCCeEEEEECCCCe-ee
Q 048012 161 GSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSP--TSDRFLCVT------GSAQAKIYDRDGLT-LG 231 (616)
Q Consensus 161 g~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp--~g~~l~~~s------~d~~v~vwd~~~~~-~~ 231 (616)
+.+|+.++.|+.|..+|..++................. +..+| .+..+++++ .++.|+.||..+++ ++
T Consensus 121 ~g~v~v~~~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~---~~~sP~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W 197 (689)
T 1yiq_A 121 KGKVYVGVLDGRLEAIDAKTGQRAWSVDTRADHKRSYT---ITGAPRVVNGKVVIGNGGAEFGVRGYVTAYDAETGKEAW 197 (689)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCSCTTSCCB---CCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEE
T ss_pred CCEEEEEccCCEEEEEECCCCCEeeeecCcCCCCCCcc---ccCCcEEECCEEEEEeCCCccCCCCEEEEEECCCCcEEE
Confidence 56788889999999999987654332211101000011 11111 134455544 26899999987554 44
Q ss_pred eEeeCc--eeEe--------ecccCC--------CcccceEEEEEcCCCCCEEEEEeCCCC-------------------
Q 048012 232 EFVKGD--MYIR--------DLKNTK--------GHICGLTCGEWHPKTKETILTSSEDGS------------------- 274 (616)
Q Consensus 232 ~~~~~~--~~~~--------~~~~~~--------~h~~~v~~~~~~p~~~~~l~s~s~Dg~------------------- 274 (616)
.+.... .... ...... ++......+.+.|+. .+|+.+..++.
T Consensus 198 ~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~-~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~ 276 (689)
T 1yiq_A 198 RFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPEL-NLLYIGVGNGSLWDPKWRSQAKGDNLFLSS 276 (689)
T ss_dssp EEESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTT-TEEEEECCCEESSCHHHHHTTCSCCTTTTE
T ss_pred EecccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCC-CEEEEeCCCCCccccCCCCCCCCCceeeee
Confidence 443210 0000 000000 111122357788876 47888887763
Q ss_pred EEEEECCCccccceEEeeecc---CCCCccEEEEEECCCCC---eEEEEeCCCcEEEEeCCCCCCCCCceeeec------
Q 048012 275 LRIWDVNEFKSQKQVIKPKLA---RPGRVAVTTCAWDCDGK---CIAGGIGDGSIQVWNLKPGWGSRPDIHVEK------ 342 (616)
Q Consensus 275 v~iwd~~~~~~~~~~~~~~~~---~~~~~~v~~~~~sp~g~---~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~------ 342 (616)
|..||..+++....+...... ......+.......+|+ .|+.++.+|.|+++|.+++. .+....
T Consensus 277 v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~----~l~~~~~~~~~w 352 (689)
T 1yiq_A 277 IVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGE----LLSAKGIVPQSW 352 (689)
T ss_dssp EEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCC----EEEEEESSCCSS
T ss_pred EEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCC----Eecccccccccc
Confidence 999999998876655432110 00111122222223565 78899999999999999873 221000
Q ss_pred ----------------------CCC-----------CCeEEEEEcCCCCeEEEEec------------------------
Q 048012 343 ----------------------GHS-----------DDITALKFSSDGRILLSRSF------------------------ 365 (616)
Q Consensus 343 ----------------------~h~-----------~~V~~l~~spdg~~l~s~s~------------------------ 365 (616)
... ..-..++|+|+..+|++...
T Consensus 353 ~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (689)
T 1yiq_A 353 TKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQL 432 (689)
T ss_dssp EEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCC
T ss_pred ccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeecccccccccccccccc
Confidence 000 01124788998888877532
Q ss_pred ---------------------CCcEEEEeCCCCCCcceEecCCCCCCcceeEEECCCCCEEEEeeccccccCCCceEEEE
Q 048012 366 ---------------------DGSLKVWDLRKMKEPLKVFEDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFY 424 (616)
Q Consensus 366 ---------------------Dg~v~lwd~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iw 424 (616)
+|+|+.||+.+++...+.-.. ..+....++..+.+|++++ .||.|+.|
T Consensus 433 g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~----~~~~~g~~~tagglvf~gt-------~dg~l~a~ 501 (689)
T 1yiq_A 433 GLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYV----TIFNGGTLSTAGNLVFEGS-------ADGRVIAY 501 (689)
T ss_dssp SSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEES----SSCCCCEEEETTTEEEEEC-------TTSEEEEE
T ss_pred CccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCC----CCccCccceECCCEEEEEC-------CCCcEEEE
Confidence 377999999876543332211 2233346666788999998 89999999
Q ss_pred eCCCCceEEEEecCCCCCeEEEEEcCCCCcEEEEec
Q 048012 425 DREKLELVSRVGISPACSVVQCAWHPKLNQIFATAG 460 (616)
Q Consensus 425 d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~ 460 (616)
|.++|+.+.++.........-+.|..++.++++...
T Consensus 502 D~~tG~~lw~~~~~~~~~~~p~ty~~~G~qyv~~~~ 537 (689)
T 1yiq_A 502 AADTGEKLWEQPAASGVMAAPVTYSVDGEQYVTFMA 537 (689)
T ss_dssp ETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEE
T ss_pred ECCCCccceeeeCCCCcccCceEEEECCEEEEEEEe
Confidence 999999999998755444455777888877666543
No 230
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.88 E-value=8e-08 Score=101.07 Aligned_cols=225 Identities=9% Similarity=0.089 Sum_probs=143.5
Q ss_pred CCCeEEEEeC-CCeEEEEECCCCeeeeEeeCceeEeecccCCCcccceEEEEE-c-CCCCCEEEEEe-------------
Q 048012 207 TSDRFLCVTG-SAQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEW-H-PKTKETILTSS------------- 270 (616)
Q Consensus 207 ~g~~l~~~s~-d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~-~-p~~~~~l~s~s------------- 270 (616)
||++|++... +..|.+.|++..++.... .+ ........+++ . |+++ ++++++
T Consensus 100 DG~~lfVnd~~~~rVavIdl~t~~~~~ii----------~i-p~g~~phg~~~~~~p~~~-~v~~~~~~~~p~~~dg~~l 167 (595)
T 1fwx_A 100 DGRFLFMNDKANTRVARVRCDVMKCDAIL----------EI-PNAKGIHGLRPQKWPRSN-YVFCNGEDETPLVNDGTNM 167 (595)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEE----------EC-SSCCSEEEEEECCSSBCS-EEEEEECSCEESSCSSSST
T ss_pred CCCEEEEEcCCCCEEEEEECCCceEeeEE----------eC-CCCCCCcceeeeecCCCc-EEEEecccccccCCCCccc
Confidence 7888777654 567999999988754321 11 11234667777 4 8775 555553
Q ss_pred -----CCCCEEEEECCCccccceEEeeeccCCCCccEEEEEECCCCCeEEEEeCCC------------------------
Q 048012 271 -----EDGSLRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWDCDGKCIAGGIGDG------------------------ 321 (616)
Q Consensus 271 -----~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~g~~dg------------------------ 321 (616)
.++.|.++|..+.+...++.... ....++++|+|+++++.+.+.
T Consensus 168 ~~~~~~~~~vtvID~~t~~v~~qI~Vgg-------~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~ 240 (595)
T 1fwx_A 168 EDVANYVNVFTAVDADKWEVAWQVLVSG-------NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAE 240 (595)
T ss_dssp TCGGGEEEEEEEEETTTTEEEEEEEESS-------CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHH
T ss_pred ccccccCceEEEEECCCCeEEEEEEeCC-------CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccc
Confidence 34679999998876665554321 124567889999998888553
Q ss_pred --------------cEEEEeCCCCCCCCCc-eeeecCCCCCeEEEEEcCCCCeEEEEe-cCCcEEEEeCCCCCC------
Q 048012 322 --------------SIQVWNLKPGWGSRPD-IHVEKGHSDDITALKFSSDGRILLSRS-FDGSLKVWDLRKMKE------ 379 (616)
Q Consensus 322 --------------~I~iwd~~~~~~~~~~-~~~~~~h~~~V~~l~~spdg~~l~s~s-~Dg~v~lwd~~~~~~------ 379 (616)
.|.+.|.++. .... +..+.. .....++.++|||+++++++ .+.+|.++|+.+...
T Consensus 241 ~~~~v~~Gk~~~i~~V~VID~~~~--~~~~~~~~Ipv-g~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l 317 (595)
T 1fwx_A 241 IEKAIAAGDYQELNGVKVVDGRKE--ASSLFTRYIPI-ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENA 317 (595)
T ss_dssp HHHHHHHTCSEEETTEEEEECSGG--GCCSSEEEEEE-ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC
T ss_pred eeEeccCCCeeEECcEEEEeCccc--CCceeEEEEec-CCCceEEEEcCCCCEEEEeCCCCCeEEEEECccccccccccc
Confidence 3666666641 0112 222221 23467899999999877766 678999999985321
Q ss_pred --cceEecCCCCCCcceeEEECCCCCEEEEeeccccccCCCceEEEEeCCC----------CceEEEEecCCC-CCe---
Q 048012 380 --PLKVFEDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREK----------LELVSRVGISPA-CSV--- 443 (616)
Q Consensus 380 --~~~~~~~~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~----------~~~~~~~~~~~~-~~v--- 443 (616)
.........-......++|+++| ++++... .++.|.+||+.+ .+.+.++.+... +..
T Consensus 318 ~~~~~v~~~v~vG~gP~h~aF~~dG-~aY~t~~------ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~ 390 (595)
T 1fwx_A 318 DPRSAVVAEPELGLGPLHTAFDGRG-NAYTSLF------LDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTV 390 (595)
T ss_dssp CGGGGEEECCBCCSCEEEEEECTTS-EEEEEET------TTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEET
T ss_pred CcccceEEEcCCCCCcceEEECCCC-eEEEEEe------cCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceec
Confidence 00122223334458899999999 6666553 789999999877 567777765321 100
Q ss_pred EEEEEcCCCCcEEEEec
Q 048012 444 VQCAWHPKLNQIFATAG 460 (616)
Q Consensus 444 ~~~~~~p~~~~l~~~~~ 460 (616)
..+..+|+|++|+++..
T Consensus 391 ~g~t~~~DGk~l~~~Nk 407 (595)
T 1fwx_A 391 MGETLDATNDWLVCLSK 407 (595)
T ss_dssp TTTSTTCCSSEEEEEES
T ss_pred cceEeCCCCCEEEEcCC
Confidence 11244688888888775
No 231
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.87 E-value=1.6e-06 Score=86.46 Aligned_cols=258 Identities=14% Similarity=0.124 Sum_probs=151.5
Q ss_pred CCcceEEecCCcccEEEEEECCCCCEEEEEEcCCcEEEEeCCCCccccccceecCC----------------CCCCceEE
Q 048012 138 PMSNEIVLKGHTKIVSALAVDHSGSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEP----------------SEGHQVRN 201 (616)
Q Consensus 138 p~~~~~~l~~H~~~V~~v~~sp~g~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~----------------~~~~~v~~ 201 (616)
|....+.+.+.-....+++|+++|++++++..++.|..|+..+.. ...+..... .....+..
T Consensus 7 ~~~~~i~~~g~~~~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~g 84 (322)
T 2fp8_A 7 PILKEILIEAPSYAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSG--FVDFAYASPYWNKAFCENSTDAEKRPLCGRTYD 84 (322)
T ss_dssp ---CEEEEECSSSCCCCEECCTTCSSEEEECTTSEEEEECCTTTC--EEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEE
T ss_pred CccceeecCCccCCceEEEEcCCCCEEEEEcCCCeEEEECCCCCc--eEEEecccccccccccccccchhccccCCCCce
Confidence 333445565544556788999999988888889999999876532 111111000 00124788
Q ss_pred EEecCCCCeEEEEeCCCeEEEEECCCCeeeeEeeCceeEeecccCCC-cccceEEEEEcC-CCCCEEEEEeC--------
Q 048012 202 LSWSPTSDRFLCVTGSAQAKIYDRDGLTLGEFVKGDMYIRDLKNTKG-HICGLTCGEWHP-KTKETILTSSE-------- 271 (616)
Q Consensus 202 l~~sp~g~~l~~~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~~~~~p-~~~~~l~s~s~-------- 271 (616)
+++.++...|+++...+.|.++|..+..+..+.. ...+ .....+.+++.+ ++ +++++-..
T Consensus 85 i~~~~~~g~l~v~d~~~~i~~~d~~~g~~~~~~~---------~~~~~~~~~p~~i~~d~~~G-~l~v~d~~~~~~~~~~ 154 (322)
T 2fp8_A 85 ISYNLQNNQLYIVDCYYHLSVVGSEGGHATQLAT---------SVDGVPFKWLYAVTVDQRTG-IVYFTDVSTLYDDRGV 154 (322)
T ss_dssp EEEETTTTEEEEEETTTEEEEECTTCEECEEEES---------EETTEECSCEEEEEECTTTC-CEEEEESCSSCCTTCH
T ss_pred EEEcCCCCcEEEEECCCCEEEEeCCCCEEEEecc---------cCCCCcccccceEEEecCCC-EEEEECCccccccccc
Confidence 9999844456666656668888877654332211 0011 123467899999 77 46665432
Q ss_pred ---------CCCEEEEECCCccccceEEeeeccCCCCccEEEEEECCCCCeEEEE-eCCCcEEEEeCCCCCCCCCceeee
Q 048012 272 ---------DGSLRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWDCDGKCIAGG-IGDGSIQVWNLKPGWGSRPDIHVE 341 (616)
Q Consensus 272 ---------Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~g-~~dg~I~iwd~~~~~~~~~~~~~~ 341 (616)
++.|..||..++... .+... .. ....++|+++|++|+++ ...+.|++|++.... ......+
T Consensus 155 ~~~~~~~~~~g~v~~~d~~~~~~~-~~~~~-~~-----~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~--~~~~~~~ 225 (322)
T 2fp8_A 155 QQIMDTSDKTGRLIKYDPSTKETT-LLLKE-LH-----VPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPK--KGTAEVL 225 (322)
T ss_dssp HHHHHHTCCCEEEEEEETTTTEEE-EEEEE-ES-----CCCEEEECTTSSEEEEEEGGGTEEEEEESSSTT--TTCEEEE
T ss_pred ceehcccCCCceEEEEeCCCCEEE-EeccC-Cc-----cCcceEECCCCCEEEEEeCCCCeEEEEECCCCc--CCccceE
Confidence 366888887654322 11111 11 34678999999866655 556899999987531 1111111
Q ss_pred cCCCCCeEEEEEcCCCCeEEEEec----------CCcEEEEeCCCCCCcceEecCCCC--CCcceeEEECCCCCEEEEee
Q 048012 342 KGHSDDITALKFSSDGRILLSRSF----------DGSLKVWDLRKMKEPLKVFEDLPN--NYAQTNVAFSPDEQLFLTGT 409 (616)
Q Consensus 342 ~~h~~~V~~l~~spdg~~l~s~s~----------Dg~v~lwd~~~~~~~~~~~~~~~~--~~~v~~v~fspdg~~l~~gs 409 (616)
....+ ...|++.++|+++++... .+.|..+|.. ...+..+..... ...++++++ .+++++++..
T Consensus 226 ~~~~g-P~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~~--G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~ 301 (322)
T 2fp8_A 226 VKIPN-PGNIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDEF--GNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTL 301 (322)
T ss_dssp EECSS-EEEEEECTTSCEEEEEEEETTSSTTSCEEEEEEEECTT--SCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECS
T ss_pred EeCCC-CCCeEECCCCCEEEEecCcccccccCCCccEEEEECCC--CCEEEEEECCCCCccccceEEEE-eCCEEEEeec
Confidence 11223 788999999987777654 4668888764 333444433211 234666776 3555555544
Q ss_pred ccccccCCCceEEEEeCC
Q 048012 410 SVERESTTGGLLCFYDRE 427 (616)
Q Consensus 410 ~~~~~~~~dg~i~iwd~~ 427 (616)
..+.|.++++.
T Consensus 302 -------~~~~i~~~~~~ 312 (322)
T 2fp8_A 302 -------FHGSVGILVYD 312 (322)
T ss_dssp -------SCSEEEEEEC-
T ss_pred -------CCCceEEEecc
Confidence 67788888865
No 232
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=98.84 E-value=1.8e-09 Score=110.22 Aligned_cols=202 Identities=12% Similarity=0.069 Sum_probs=106.1
Q ss_pred CCCeEEEEeCCCeEEEEECCCCee-eeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEEEECCCccc
Q 048012 207 TSDRFLCVTGSAQAKIYDRDGLTL-GEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKS 285 (616)
Q Consensus 207 ~g~~l~~~s~d~~v~vwd~~~~~~-~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~ 285 (616)
++..+++++.++.|+.||..++++ +.+.. ..+.+..+..++ .++++++.|+.|+.||..+++.
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~---------------~~~~s~p~~~~g-~~~v~~s~dg~l~a~d~~tG~~ 71 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE---------------DPVLQVPTHVEE-PAFLPDPNDGSLYTLGSKNNEG 71 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC---------------CCSCCCC------CCEEECTTTCCEEEC-----CC
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC---------------CCceecceEcCC-CEEEEeCCCCEEEEEECCCCce
Confidence 467889999999999999876553 33311 122233333444 4677778999999999987765
Q ss_pred cceEEeeeccCCCCccEE-EEEECCCCCeEEEEeCCCcEEEEeCCCCCCCCCceeeecCCCCCeEEEEEcCCCCeEEEEe
Q 048012 286 QKQVIKPKLARPGRVAVT-TCAWDCDGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHSDDITALKFSSDGRILLSRS 364 (616)
Q Consensus 286 ~~~~~~~~~~~~~~~~v~-~~~~sp~g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s 364 (616)
.......... .+. +.++. .+..|++|+.+|.|+.||..++ ..+..+..+. .+.++|++..|++++
T Consensus 72 ~w~~~~~~~~-----~~~~sp~~~-~~~~v~~g~~dg~v~a~D~~tG----~~~w~~~~~~----~~~~~p~~~~v~~~~ 137 (369)
T 2hz6_A 72 LTKLPFTIPE-----LVQASPCRS-SDGILYMGKKQDIWYVIDLLTG----EKQQTLSSAF----ADSLSPSTSLLYLGR 137 (369)
T ss_dssp SEECSCCHHH-----HHTTCSCC------CCCCEEEEEEEEECCC------------------------------EEEEE
T ss_pred eeeeeccCcc-----ccccCceEe-cCCEEEEEeCCCEEEEEECCCC----cEEEEecCCC----cccccccCCEEEEEe
Confidence 4433211100 000 00111 3456778888999999999987 3333333332 245567888999999
Q ss_pred cCCcEEEEeCCCCCCcceEecCCCCCCcceeEEECCCC---CEEEEeeccccccCCCceEEEEeCCCCceEEEEecCCCC
Q 048012 365 FDGSLKVWDLRKMKEPLKVFEDLPNNYAQTNVAFSPDE---QLFLTGTSVERESTTGGLLCFYDREKLELVSRVGISPAC 441 (616)
Q Consensus 365 ~Dg~v~lwd~~~~~~~~~~~~~~~~~~~v~~v~fspdg---~~l~~gs~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 441 (616)
.|+.|+.||.++++..... ... .....+++.+. ..+++++ .+|.|+.||..+++.+.+... ..
T Consensus 138 ~dg~v~a~d~~tG~~~W~~-~~~----~~~~~~~~~~~~~~~~v~~~~-------~dg~v~a~d~~tG~~~W~~~~--~~ 203 (369)
T 2hz6_A 138 TEYTITMYDTKTRELRWNA-TYF----DYAASLPEDDVDYKMSHFVSN-------GDGLVVTVDSESGDVLWIQNY--AS 203 (369)
T ss_dssp EEEEEECCCSSSSSCCCEE-EEE----EECCBCCCCCTTCCCCEEEEE-------TSCEEEEECTTTCCEEEEEEC--SS
T ss_pred cCCEEEEEECCCCCEEEeE-ecc----cccCccccCCccccceEEEEC-------CCCEEEEEECCCCcEEEEecC--CC
Confidence 9999999999886543322 110 01223344432 4566666 789999999999999887764 23
Q ss_pred CeEE-EEEcCCC
Q 048012 442 SVVQ-CAWHPKL 452 (616)
Q Consensus 442 ~v~~-~~~~p~~ 452 (616)
++.. ..+++++
T Consensus 204 pv~~~~~~~~dg 215 (369)
T 2hz6_A 204 PVVAFYVWQREG 215 (369)
T ss_dssp CEEEEEECTTSS
T ss_pred ceEEEEEecCCc
Confidence 4443 3444444
No 233
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=98.79 E-value=4.6e-07 Score=99.89 Aligned_cols=288 Identities=13% Similarity=0.051 Sum_probs=164.6
Q ss_pred CCEEEEEEcCCcEEEEeCCCCccccccceecCC------CCCCceEEEEecCCCCeEEEEeCCCeEEEEECCCCe-eeeE
Q 048012 161 GSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEP------SEGHQVRNLSWSPTSDRFLCVTGSAQAKIYDRDGLT-LGEF 233 (616)
Q Consensus 161 g~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~------~~~~~v~~l~~sp~g~~l~~~s~d~~v~vwd~~~~~-~~~~ 233 (616)
+..|+.++.++.|..+|..++....+.-..... ........+.+ .+..|++++.++.|..+|..+++ ++.+
T Consensus 77 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~--~~~~v~v~~~dg~l~alD~~tG~~~W~~ 154 (677)
T 1kb0_A 77 DGIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVAL--WKGKVYVGAWDGRLIALDAATGKEVWHQ 154 (677)
T ss_dssp TTEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceE--ECCEEEEEcCCCEEEEEECCCCCEEeee
Confidence 456666777788888887765433221110000 00000111222 46788889999999999987554 4444
Q ss_pred eeC-ceeEeecccCCCcccceEE-EEEcCCCCCEEEEEeC------CCCEEEEECCCccccceEEeeeccC---------
Q 048012 234 VKG-DMYIRDLKNTKGHICGLTC-GEWHPKTKETILTSSE------DGSLRIWDVNEFKSQKQVIKPKLAR--------- 296 (616)
Q Consensus 234 ~~~-~~~~~~~~~~~~h~~~v~~-~~~~p~~~~~l~s~s~------Dg~v~iwd~~~~~~~~~~~~~~~~~--------- 296 (616)
... +. . ....+.. .... + ..++.++. ++.|+.||..+++....+.......
T Consensus 155 ~~~~~~--------~-~~~~~~~~p~v~--~-~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~ 222 (677)
T 1kb0_A 155 NTFEGQ--------K-GSLTITGAPRVF--K-GKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESM 222 (677)
T ss_dssp ETTTTC--------C-SSCBCCSCCEEE--T-TEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHH
T ss_pred cCCcCc--------C-cCcccccCcEEE--C-CEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCcccccccccc
Confidence 221 10 0 0001110 0111 2 24555543 7899999999988766554321110
Q ss_pred -----------------CCCccEEEEEECCCCCeEEEEeCCC-------------------cEEEEeCCCCCCCCCceee
Q 048012 297 -----------------PGRVAVTTCAWDCDGKCIAGGIGDG-------------------SIQVWNLKPGWGSRPDIHV 340 (616)
Q Consensus 297 -----------------~~~~~v~~~~~sp~g~~l~~g~~dg-------------------~I~iwd~~~~~~~~~~~~~ 340 (616)
.+......+++++++.+|++++.++ +|..+|..++ ..+-.
T Consensus 223 ~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG----~~~W~ 298 (677)
T 1kb0_A 223 KRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTG----KYKWH 298 (677)
T ss_dssp HHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTC----CEEEE
T ss_pred ccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCC----CEEEE
Confidence 0011123578889999999888764 5999999987 33333
Q ss_pred ec--CCC-------CCeEEEEEcCCC---CeEEEEecCCcEEEEeCCCCCCcceEecCCC--------------------
Q 048012 341 EK--GHS-------DDITALKFSSDG---RILLSRSFDGSLKVWDLRKMKEPLKVFEDLP-------------------- 388 (616)
Q Consensus 341 ~~--~h~-------~~V~~l~~spdg---~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~-------------------- 388 (616)
+. .|. .....+....+| .+|+.++.+|.|+++|..+++.... +....
T Consensus 299 ~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~-~~~~~~~~~~~~d~~g~~~~~~~~~ 377 (677)
T 1kb0_A 299 YQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISA-KNFVPVNWASGYDKHGKPIGIAAAR 377 (677)
T ss_dssp EESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEE-EESSCCSSEEEECTTSCEEECGGGG
T ss_pred EecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEecc-ccccccCcccccCCCCceeeccccC
Confidence 22 231 122233344477 6899999999999999987654222 11100
Q ss_pred -------------CCCcceeEEECCCCCEEEEeeccc-----------cc-------------------------cCCCc
Q 048012 389 -------------NNYAQTNVAFSPDEQLFLTGTSVE-----------RE-------------------------STTGG 419 (616)
Q Consensus 389 -------------~~~~v~~v~fspdg~~l~~gs~~~-----------~~-------------------------~~~dg 419 (616)
....-..++|+|++.++++..... .. ....|
T Consensus 378 ~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g 457 (677)
T 1kb0_A 378 DGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFG 457 (677)
T ss_dssp CTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEE
T ss_pred cCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCcc
Confidence 000112578999999888865310 00 00128
Q ss_pred eEEEEeCCCCceEEEEecCCCCCeEEEEEcCCCCcEEEEeccCCCCceEEEecc
Q 048012 420 LLCFYDREKLELVSRVGISPACSVVQCAWHPKLNQIFATAGDKSQGGTHILYDP 473 (616)
Q Consensus 420 ~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~~~~~~~v~~~ 473 (616)
.|..||+.+++.+-++... ..+....+...+..+++++. ++.+.+|+.
T Consensus 458 ~l~A~D~~tG~~~W~~~~~--~~~~~g~~~~~g~~v~~g~~----dg~l~a~D~ 505 (677)
T 1kb0_A 458 RLLAWDPVAQKAAWSVEHV--SPWNGGTLTTAGNVVFQGTA----DGRLVAYHA 505 (677)
T ss_dssp EEEEEETTTTEEEEEEEES--SSCCCCEEEETTTEEEEECT----TSEEEEEET
T ss_pred EEEEEeCCCCcEEeecCCC--CCCcCcceEeCCCEEEEECC----CCcEEEEEC
Confidence 8999999999998888643 33444556667778888765 556666664
No 234
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.75 E-value=5.2e-07 Score=94.98 Aligned_cols=188 Identities=8% Similarity=0.040 Sum_probs=128.4
Q ss_pred CCCCEEEEEeCCCCEEEEECCCccccceEEeeeccCCCCccEEEEEE-C-CCCCeEEEEe------------------CC
Q 048012 261 KTKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAW-D-CDGKCIAGGI------------------GD 320 (616)
Q Consensus 261 ~~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~-s-p~g~~l~~g~------------------~d 320 (616)
+++.++++...+..|.+.|+.+.++...+..+... .+..+++ + |+++++++++ .+
T Consensus 100 DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~-----~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~ 174 (595)
T 1fwx_A 100 DGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAK-----GIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYV 174 (595)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCC-----SEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEE
T ss_pred CCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCC-----CCcceeeeecCCCcEEEEecccccccCCCCcccccccccC
Confidence 56656666667778999999998766644222111 4677887 5 9999999885 24
Q ss_pred CcEEEEeCCCCCCCCCceeeecCCCCCeEEEEEcCCCCeEEEEecCC---------------------------------
Q 048012 321 GSIQVWNLKPGWGSRPDIHVEKGHSDDITALKFSSDGRILLSRSFDG--------------------------------- 367 (616)
Q Consensus 321 g~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg--------------------------------- 367 (616)
+.|.++|..+. .......--. .-..++++|+|+++++.+.+.
T Consensus 175 ~~vtvID~~t~----~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk 249 (595)
T 1fwx_A 175 NVFTAVDADKW----EVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGD 249 (595)
T ss_dssp EEEEEEETTTT----EEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTC
T ss_pred ceEEEEECCCC----eEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCC
Confidence 57899998864 3433333211 346788999999999988654
Q ss_pred -----cEEEEeCCC--CCCcceEecCCCCCCcceeEEECCCCCEEEEeeccccccCCCceEEEEeCCCCc----------
Q 048012 368 -----SLKVWDLRK--MKEPLKVFEDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREKLE---------- 430 (616)
Q Consensus 368 -----~v~lwd~~~--~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~~~---------- 430 (616)
.|.+.|.++ ....+..+.. .....++.|+|||++++++.. .+..|.++|+.+.+
T Consensus 250 ~~~i~~V~VID~~~~~~~~~~~~Ipv---g~~PhGv~~sPDGk~v~V~~~------~s~~VsVid~~~~~~~~~~~l~~~ 320 (595)
T 1fwx_A 250 YQELNGVKVVDGRKEASSLFTRYIPI---ANNPHGCNMAPDKKHLCVAGK------LSPTVTVLDVTRFDAVFYENADPR 320 (595)
T ss_dssp SEEETTEEEEECSGGGCCSSEEEEEE---ESSCCCEEECTTSSEEEEECT------TSSBEEEEEGGGHHHHHHSCCCGG
T ss_pred eeEECcEEEEeCcccCCceeEEEEec---CCCceEEEEcCCCCEEEEeCC------CCCeEEEEECcccccccccccCcc
Confidence 466777765 2221222221 123567999999999998874 78899999999763
Q ss_pred --eEEEEecCCCCCeEEEEEcCCCCcEEEEeccCCCCceEEEecc
Q 048012 431 --LVSRVGISPACSVVQCAWHPKLNQIFATAGDKSQGGTHILYDP 473 (616)
Q Consensus 431 --~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~~~~~~~v~~~ 473 (616)
.+..+ ..+.....++|+|+| .++++..- +..+.+|++
T Consensus 321 ~~v~~~v--~vG~gP~h~aF~~dG-~aY~t~~l---dsqV~kwdi 359 (595)
T 1fwx_A 321 SAVVAEP--ELGLGPLHTAFDGRG-NAYTSLFL---DSQVVKWNI 359 (595)
T ss_dssp GGEEECC--BCCSCEEEEEECTTS-EEEEEETT---TTEEEEEEH
T ss_pred cceEEEc--CCCCCcceEEECCCC-eEEEEEec---CCcEEEEEh
Confidence 33333 345668999999999 77777763 666666764
No 235
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.75 E-value=4.4e-06 Score=83.22 Aligned_cols=259 Identities=9% Similarity=0.053 Sum_probs=148.1
Q ss_pred eEEEEecCCCCeEEEEeCCCeEEEEECCCCeeeeEeeCceeEe-ec------ccCCCcccceEEEEEcCCCCCEEEEEeC
Q 048012 199 VRNLSWSPTSDRFLCVTGSAQAKIYDRDGLTLGEFVKGDMYIR-DL------KNTKGHICGLTCGEWHPKTKETILTSSE 271 (616)
Q Consensus 199 v~~l~~sp~g~~l~~~s~d~~v~vwd~~~~~~~~~~~~~~~~~-~~------~~~~~h~~~v~~~~~~p~~~~~l~s~s~ 271 (616)
..+++|+++++.++++..++.|..|+..+..+..+.....+.. .. ............+++.++++ .|+.+..
T Consensus 21 p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g-~l~v~d~ 99 (322)
T 2fp8_A 21 PNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNN-QLYIVDC 99 (322)
T ss_dssp CCCEECCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTT-EEEEEET
T ss_pred ceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCC-cEEEEEC
Confidence 5678899999878888889999999988765543321100000 00 00001123578899997333 4555544
Q ss_pred CCCEEEEECCCccccceEEeeeccCCCCccEEEEEECC-CCCeEEEEeC-----------------CCcEEEEeCCCCCC
Q 048012 272 DGSLRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWDC-DGKCIAGGIG-----------------DGSIQVWNLKPGWG 333 (616)
Q Consensus 272 Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~g~~l~~g~~-----------------dg~I~iwd~~~~~~ 333 (616)
.+.|..+|..++. ...+..... .........+++.+ +|++.++-.. +|.|..||..++
T Consensus 100 ~~~i~~~d~~~g~-~~~~~~~~~-~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~-- 175 (322)
T 2fp8_A 100 YYHLSVVGSEGGH-ATQLATSVD-GVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTK-- 175 (322)
T ss_dssp TTEEEEECTTCEE-CEEEESEET-TEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTT--
T ss_pred CCCEEEEeCCCCE-EEEecccCC-CCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCC--
Confidence 5558888876432 222211111 00111468899999 9987766432 367888987654
Q ss_pred CCCceeeecCCCCCeEEEEEcCCCCeEEEE-ecCCcEEEEeCCCCCC-cceEecCCCCCCcceeEEECCCCCEEEEeecc
Q 048012 334 SRPDIHVEKGHSDDITALKFSSDGRILLSR-SFDGSLKVWDLRKMKE-PLKVFEDLPNNYAQTNVAFSPDEQLFLTGTSV 411 (616)
Q Consensus 334 ~~~~~~~~~~h~~~V~~l~~spdg~~l~s~-s~Dg~v~lwd~~~~~~-~~~~~~~~~~~~~v~~v~fspdg~~l~~gs~~ 411 (616)
.+..+.........|+|+++|++|+.+ ...+.|.+|++..... ....+.... . ...++++++|.++++....
T Consensus 176 ---~~~~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~--g-P~gi~~d~~G~l~va~~~~ 249 (322)
T 2fp8_A 176 ---ETTLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIP--N-PGNIKRNADGHFWVSSSEE 249 (322)
T ss_dssp ---EEEEEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECS--S-EEEEEECTTSCEEEEEEEE
T ss_pred ---EEEEeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCC--C-CCCeEECCCCCEEEEecCc
Confidence 122111112345689999999866555 5568999999874221 122222222 2 7789999999877766410
Q ss_pred ccc---cCCCceEEEEeCCCCceEEEEecCC---CCCeEEEEEcCCCCcEEEEeccCCCCceEEEeccc
Q 048012 412 ERE---STTGGLLCFYDREKLELVSRVGISP---ACSVVQCAWHPKLNQIFATAGDKSQGGTHILYDPR 474 (616)
Q Consensus 412 ~~~---~~~dg~i~iwd~~~~~~~~~~~~~~---~~~v~~~~~~p~~~~l~~~~~d~~~~~~~~v~~~~ 474 (616)
... ....+.|..+|. .++.+..+.... ...+..+++. +..|++++.. .+.+.++++.
T Consensus 250 ~~~~~~~~~~~~v~~~d~-~G~~~~~~~~~~g~~~~~~~~~~~~--~g~L~v~~~~---~~~i~~~~~~ 312 (322)
T 2fp8_A 250 LDGNMHGRVDPKGIKFDE-FGNILEVIPLPPPFAGEHFEQIQEH--DGLLYIGTLF---HGSVGILVYD 312 (322)
T ss_dssp TTSSTTSCEEEEEEEECT-TSCEEEEEECCTTTTTSCCCEEEEE--TTEEEEECSS---CSEEEEEEC-
T ss_pred ccccccCCCccEEEEECC-CCCEEEEEECCCCCccccceEEEEe--CCEEEEeecC---CCceEEEecc
Confidence 000 001467888886 477777776532 1345556663 3456666542 5556666554
No 236
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.74 E-value=1.1e-06 Score=83.84 Aligned_cols=187 Identities=11% Similarity=0.006 Sum_probs=122.4
Q ss_pred ceEEEEEcCCCCCEEEEEeC--CCCEEEEECCCccccceEEeeeccCCCCccEEEEEECCCCCeE-EEEeCCCcEEEEeC
Q 048012 252 GLTCGEWHPKTKETILTSSE--DGSLRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWDCDGKCI-AGGIGDGSIQVWNL 328 (616)
Q Consensus 252 ~v~~~~~~p~~~~~l~s~s~--Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l-~~g~~dg~I~iwd~ 328 (616)
....+.|++++ .++++.+. ++.|+++|+.+++....+.... ......+++. ++.| ++.-.++.|.++|.
T Consensus 22 f~~Gl~~~~dg-~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~-----~~fgeGi~~~--g~~lyv~t~~~~~v~viD~ 93 (266)
T 2iwa_A 22 FTQGLVYAEND-TLFESTGLYGRSSVRQVALQTGKVENIHKMDD-----SYFGEGLTLL--NEKLYQVVWLKNIGFIYDR 93 (266)
T ss_dssp CEEEEEECSTT-EEEEEECSTTTCEEEEEETTTCCEEEEEECCT-----TCCEEEEEEE--TTEEEEEETTCSEEEEEET
T ss_pred CcccEEEeCCC-eEEEECCCCCCCEEEEEECCCCCEEEEEecCC-----CcceEEEEEe--CCEEEEEEecCCEEEEEEC
Confidence 35788999874 45555443 5789999999887665543221 1122345554 4444 44556889999999
Q ss_pred CCCCCCCCceeeecCCCCCeEEEEEcCCCCeEEEEecCCcEEEEeCCCCCCcceEecCCCCC---CcceeEEECCCCCEE
Q 048012 329 KPGWGSRPDIHVEKGHSDDITALKFSSDGRILLSRSFDGSLKVWDLRKMKEPLKVFEDLPNN---YAQTNVAFSPDEQLF 405 (616)
Q Consensus 329 ~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~---~~v~~v~fspdg~~l 405 (616)
.+. ..+..+...... ...+++||+.|+++..+++|.++|..+.+.. ..+.-.... ..+..+.|. ++++.
T Consensus 94 ~t~----~v~~~i~~g~~~--g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~-~~I~Vg~~~~p~~~~nele~~-dg~ly 165 (266)
T 2iwa_A 94 RTL----SNIKNFTHQMKD--GWGLATDGKILYGSDGTSILYEIDPHTFKLI-KKHNVKYNGHRVIRLNELEYI-NGEVW 165 (266)
T ss_dssp TTT----EEEEEEECCSSS--CCEEEECSSSEEEECSSSEEEEECTTTCCEE-EEEECEETTEECCCEEEEEEE-TTEEE
T ss_pred CCC----cEEEEEECCCCC--eEEEEECCCEEEEECCCCeEEEEECCCCcEE-EEEEECCCCcccccceeEEEE-CCEEE
Confidence 875 445444322112 2335567887777777899999999875543 332211111 125577887 67544
Q ss_pred EEeeccccccCCCceEEEEeCCCCceEEEEecCC------------CCCeEEEEEcCCCCcEEEEecc
Q 048012 406 LTGTSVERESTTGGLLCFYDREKLELVSRVGISP------------ACSVVQCAWHPKLNQIFATAGD 461 (616)
Q Consensus 406 ~~gs~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~------------~~~v~~~~~~p~~~~l~~~~~d 461 (616)
+... .++.|.+.|..+++.+..+.+.. ....+.++|+|+++.|++++..
T Consensus 166 vn~~-------~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~ 226 (266)
T 2iwa_A 166 ANIW-------QTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKL 226 (266)
T ss_dssp EEET-------TSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETT
T ss_pred EecC-------CCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCC
Confidence 4443 67899999999999999997631 1356899999999999998863
No 237
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=98.73 E-value=7.4e-07 Score=98.42 Aligned_cols=290 Identities=14% Similarity=0.071 Sum_probs=164.8
Q ss_pred CCEEEEEEcCCcEEEEeCCCCccccccceecCC----CC-CCce-EEEEecCCCCeEEEEeCCCeEEEEECCCCe-eeeE
Q 048012 161 GSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEP----SE-GHQV-RNLSWSPTSDRFLCVTGSAQAKIYDRDGLT-LGEF 233 (616)
Q Consensus 161 g~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~----~~-~~~v-~~l~~sp~g~~l~~~s~d~~v~vwd~~~~~-~~~~ 233 (616)
+..|+.++.++.|..+|..++....+.-..... .. ...+ ..+.+ .+..|++++.++.|..+|..+++ ++.+
T Consensus 70 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~v~v~~~dg~l~AlDa~TG~~~W~~ 147 (689)
T 1yiq_A 70 DGVMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAV--WKGKVYVGVLDGRLEAIDAKTGQRAWSV 147 (689)
T ss_dssp TTEEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred CCEEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEE--ECCEEEEEccCCEEEEEECCCCCEeeee
Confidence 557777788888988998776543321110000 00 0000 11111 35678889999999999987554 4443
Q ss_pred eeC-ceeEeecccCCCcc-cceEEEEEcCCCCCEEEEEe------CCCCEEEEECCCccccceEEeeecc-C--------
Q 048012 234 VKG-DMYIRDLKNTKGHI-CGLTCGEWHPKTKETILTSS------EDGSLRIWDVNEFKSQKQVIKPKLA-R-------- 296 (616)
Q Consensus 234 ~~~-~~~~~~~~~~~~h~-~~v~~~~~~p~~~~~l~s~s------~Dg~v~iwd~~~~~~~~~~~~~~~~-~-------- 296 (616)
... + ........ ..+ .. + ..++.++ .++.|+.||..+++....+...... .
T Consensus 148 ~~~~~-----~~~~~~~~~sP~----v~--~-g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~ 215 (689)
T 1yiq_A 148 DTRAD-----HKRSYTITGAPR----VV--N-GKVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGM 215 (689)
T ss_dssp ECCSC-----TTSCCBCCSCCE----EE--T-TEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHH
T ss_pred cCcCC-----CCCCccccCCcE----EE--C-CEEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCcccccccccc
Confidence 211 0 00000011 111 11 2 2444443 3789999999998876655421100 0
Q ss_pred ----------------CCCccEEEEEECCCCCeEEEEeCCCc-------------------EEEEeCCCCCCCCCceeee
Q 048012 297 ----------------PGRVAVTTCAWDCDGKCIAGGIGDGS-------------------IQVWNLKPGWGSRPDIHVE 341 (616)
Q Consensus 297 ----------------~~~~~v~~~~~sp~g~~l~~g~~dg~-------------------I~iwd~~~~~~~~~~~~~~ 341 (616)
.+......+++++++.+|++++.++. |..||..++ ..+-.+
T Consensus 216 ~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG----~~~W~~ 291 (689)
T 1yiq_A 216 EIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTG----EYVWHY 291 (689)
T ss_dssp HHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTC----CEEEEE
T ss_pred cccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCC----ceeEee
Confidence 00011135788898999999988864 999999988 333333
Q ss_pred cC--CC-------CCeEEEEEcCCCC---eEEEEecCCcEEEEeCCCCCCcceEecCC----------------------
Q 048012 342 KG--HS-------DDITALKFSSDGR---ILLSRSFDGSLKVWDLRKMKEPLKVFEDL---------------------- 387 (616)
Q Consensus 342 ~~--h~-------~~V~~l~~spdg~---~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~---------------------- 387 (616)
.. |. ..+.......+|+ +|+.++.+|.|+++|.++++.....-...
T Consensus 292 ~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~ 371 (689)
T 1yiq_A 292 QTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAA 371 (689)
T ss_dssp ESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHC
T ss_pred ecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhcc
Confidence 22 32 1222222223565 78899999999999998765421110000
Q ss_pred --------------CCCCcceeEEECCCCCEEEEeeccc--------c-----------cc-------------------
Q 048012 388 --------------PNNYAQTNVAFSPDEQLFLTGTSVE--------R-----------ES------------------- 415 (616)
Q Consensus 388 --------------~~~~~v~~v~fspdg~~l~~gs~~~--------~-----------~~------------------- 415 (616)
........++|+|+..+|++..... . ..
T Consensus 372 ~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~ 451 (689)
T 1yiq_A 372 YWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAK 451 (689)
T ss_dssp TTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHT
T ss_pred ccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCC
Confidence 0001123479999999888875310 0 00
Q ss_pred CCCceEEEEeCCCCceEEEEecCCCCCeEEEEEcCCCCcEEEEeccCCCCceEEEeccc
Q 048012 416 TTGGLLCFYDREKLELVSRVGISPACSVVQCAWHPKLNQIFATAGDKSQGGTHILYDPR 474 (616)
Q Consensus 416 ~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~~~~~~~v~~~~ 474 (616)
..+|.|+.||+.+++.+-++... ..+....+...+..+|+++. ++.+++||..
T Consensus 452 ~~~g~l~A~D~~tG~~~W~~~~~--~~~~~g~~~tagglvf~gt~----dg~l~a~D~~ 504 (689)
T 1yiq_A 452 SWSGKLIAWDPVKQQAAWEVPYV--TIFNGGTLSTAGNLVFEGSA----DGRVIAYAAD 504 (689)
T ss_dssp TCEEEEEEEETTTTEEEEEEEES--SSCCCCEEEETTTEEEEECT----TSEEEEEETT
T ss_pred CcceeEEEEECCCCCeEeEccCC--CCccCccceECCCEEEEECC----CCcEEEEECC
Confidence 01488999999999999888653 23333455667788888876 5566666643
No 238
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.70 E-value=1.2e-05 Score=77.67 Aligned_cols=240 Identities=8% Similarity=-0.069 Sum_probs=141.8
Q ss_pred CeEEEEeCCCeEEEEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEEEECCCccccce
Q 048012 209 DRFLCVTGSAQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQ 288 (616)
Q Consensus 209 ~~l~~~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~~ 288 (616)
.+|+.+. .+.|+.+++++.....+.. . . .+......+..++|+++++.++++....+.|..+++..... ..
T Consensus 2 ~~l~~~~-~~~I~~~~~~g~~~~~~~~-~----~--~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~-~~ 72 (267)
T 1npe_A 2 THLLFAQ-TGKIERLPLERNTMKKTEA-K----A--FLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEP-TT 72 (267)
T ss_dssp EEEEEEE-EEEEEEEEESSSCBCGGGC-E----E--EEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCC-EE
T ss_pred cEEEEEc-CCeEEEEEecCcccccccc-e----e--eecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCc-EE
Confidence 3455444 3478888887654311000 0 0 01112235679999997766777777788999999875432 22
Q ss_pred EEeeeccCCCCccEEEEEECCCCCeEE-EEeCCCcEEEEeCCCCCCCCCceeeecCCCCCeEEEEEcCCCCeEEEEec--
Q 048012 289 VIKPKLARPGRVAVTTCAWDCDGKCIA-GGIGDGSIQVWNLKPGWGSRPDIHVEKGHSDDITALKFSSDGRILLSRSF-- 365 (616)
Q Consensus 289 ~~~~~~~~~~~~~v~~~~~sp~g~~l~-~g~~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~-- 365 (616)
+.. ........+++++++..|+ +-...+.|.++++... ...............|+++|++..|+.+..
T Consensus 73 ~~~-----~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~----~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~ 143 (267)
T 1npe_A 73 IIR-----QDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGT----QRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNR 143 (267)
T ss_dssp EEC-----TTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSC----SCEEEECSSCSSEEEEEEETTTTEEEEEECCS
T ss_pred EEE-----CCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCC----CEEEEEECCCCCccEEEEeeCCCEEEEEECCC
Confidence 211 1112578999999755554 4455789999998753 111122222245789999996665555543
Q ss_pred -CCcEEEEeCCCCCCcceEecCCCCCCcceeEEECCCCCEEEEeeccccccCCCceEEEEeCCCCceEEEEecCCCCCeE
Q 048012 366 -DGSLKVWDLRKMKEPLKVFEDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREKLELVSRVGISPACSVV 444 (616)
Q Consensus 366 -Dg~v~lwd~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~ 444 (616)
.+.|..+++.. .. ...+.. ........++|++++.+|+.+.. ..+.|.++|+........+. ......
T Consensus 144 ~~~~I~~~~~dg-~~-~~~~~~-~~~~~P~gia~d~~~~~lyv~d~------~~~~I~~~~~~g~~~~~~~~--~~~~P~ 212 (267)
T 1npe_A 144 DNPKIETSHMDG-TN-RRILAQ-DNLGLPNGLTFDAFSSQLCWVDA------GTHRAECLNPAQPGRRKVLE--GLQYPF 212 (267)
T ss_dssp SSCEEEEEETTS-CC-CEEEEC-TTCSCEEEEEEETTTTEEEEEET------TTTEEEEEETTEEEEEEEEE--CCCSEE
T ss_pred CCcEEEEEecCC-CC-cEEEEE-CCCCCCcEEEEcCCCCEEEEEEC------CCCEEEEEecCCCceEEEec--CCCCce
Confidence 36888888763 22 222221 12234788999999887777663 66899999987654433332 223345
Q ss_pred EEEEcCCCCcEEEEeccCCCCceEEEecccCCCCCcEEEEe
Q 048012 445 QCAWHPKLNQIFATAGDKSQGGTHILYDPRLSERGALVCVA 485 (616)
Q Consensus 445 ~~~~~p~~~~l~~~~~d~~~~~~~~v~~~~~s~~g~~l~s~ 485 (616)
.++.. +..|+++... .+.+.+++.. .|+.+.+-
T Consensus 213 gi~~d--~~~lyva~~~---~~~v~~~d~~---~g~~~~~i 245 (267)
T 1npe_A 213 AVTSY--GKNLYYTDWK---TNSVIAMDLA---ISKEMDTF 245 (267)
T ss_dssp EEEEE--TTEEEEEETT---TTEEEEEETT---TTEEEEEE
T ss_pred EEEEe--CCEEEEEECC---CCeEEEEeCC---CCCceEEE
Confidence 66654 4677777653 5666666654 35554443
No 239
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=98.64 E-value=8.2e-09 Score=105.32 Aligned_cols=177 Identities=16% Similarity=0.093 Sum_probs=93.0
Q ss_pred CEEEEEeCCCCEEEEECCCccccceEEeeeccCCCCccEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCCCCCceeeecC
Q 048012 264 ETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWDCDGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKG 343 (616)
Q Consensus 264 ~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~ 343 (616)
.++++++.|+.|+.||..+++....+.. . .+.+..+..++.++++++.||.|+.||..++. .+..+..
T Consensus 10 ~~v~~gs~dg~v~a~d~~tG~~~W~~~~---~-----~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~----~~w~~~~ 77 (369)
T 2hz6_A 10 TLLFVSTLDGSLHAVSKRTGSIKWTLKE---D-----PVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNE----GLTKLPF 77 (369)
T ss_dssp TEEEEEETTSEEEEEETTTCCEEEEEEC---C-----CSCCCC-----CCEEECTTTCCEEEC-----C----CSEECSC
T ss_pred CEEEEEcCCCEEEEEECCCCCEEEEecC---C-----CceecceEcCCCEEEEeCCCCEEEEEECCCCc----eeeeeec
Confidence 5899999999999999999877665532 1 23333445677788888899999999998762 2222222
Q ss_pred CCC-CeE-EEEEcCCCCeEEEEecCCcEEEEeCCCCCCcceEecCCCCCCcceeEEECCCCCEEEEeeccccccCCCceE
Q 048012 344 HSD-DIT-ALKFSSDGRILLSRSFDGSLKVWDLRKMKEPLKVFEDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLL 421 (616)
Q Consensus 344 h~~-~V~-~l~~spdg~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i 421 (616)
+.. .+. +..+. ++..|++++.|+.|+.||..+++... .+.... .+.++|++..|++++ .++.|
T Consensus 78 ~~~~~~~~sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w-~~~~~~------~~~~~p~~~~v~~~~-------~dg~v 142 (369)
T 2hz6_A 78 TIPELVQASPCRS-SDGILYMGKKQDIWYVIDLLTGEKQQ-TLSSAF------ADSLSPSTSLLYLGR-------TEYTI 142 (369)
T ss_dssp CHHHHHTTCSCC------CCCCEEEEEEEEECCC-----------------------------EEEEE-------EEEEE
T ss_pred cCccccccCceEe-cCCEEEEEeCCCEEEEEECCCCcEEE-EecCCC------cccccccCCEEEEEe-------cCCEE
Confidence 211 110 11111 34567888889999999999865432 222111 245667888999888 78999
Q ss_pred EEEeCCCCceEEEEecCCCCCeEEEEEcCCC---CcEEEEeccCCCCceEEEeccc
Q 048012 422 CFYDREKLELVSRVGISPACSVVQCAWHPKL---NQIFATAGDKSQGGTHILYDPR 474 (616)
Q Consensus 422 ~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~---~~l~~~~~d~~~~~~~~v~~~~ 474 (616)
+.||..+++.+..+.... ....++..+. ..+++++. ++.+..|+..
T Consensus 143 ~a~d~~tG~~~W~~~~~~---~~~~~~~~~~~~~~~v~~~~~----dg~v~a~d~~ 191 (369)
T 2hz6_A 143 TMYDTKTRELRWNATYFD---YAASLPEDDVDYKMSHFVSNG----DGLVVTVDSE 191 (369)
T ss_dssp ECCCSSSSSCCCEEEEEE---ECCBCCCCCTTCCCCEEEEET----SCEEEEECTT
T ss_pred EEEECCCCCEEEeEeccc---ccCccccCCccccceEEEECC----CCEEEEEECC
Confidence 999999998876654321 1222333322 56666665 4455566553
No 240
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=98.63 E-value=4.9e-05 Score=77.24 Aligned_cols=241 Identities=11% Similarity=0.051 Sum_probs=138.1
Q ss_pred CCCEEEEEEcCCcEEEEeCCCCccccccceecCCCCCCceEEEEecCCCCeEEEEeCCCeEEEEECCCCe-eeeEeeCce
Q 048012 160 SGSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSDRFLCVTGSAQAKIYDRDGLT-LGEFVKGDM 238 (616)
Q Consensus 160 ~g~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~s~d~~v~vwd~~~~~-~~~~~~~~~ 238 (616)
++..|+.++.++.|..+|..++...... .........++ . .+..+++++.++.|..+|..+++ ++.+.....
T Consensus 102 ~~~~v~v~~~~g~l~a~d~~tG~~~W~~-~~~~~~~~~p~----~--~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~ 174 (376)
T 3q7m_A 102 SGGHVYIGSEKAQVYALNTSDGTVAWQT-KVAGEALSRPV----V--SDGLVLIHTSNGQLQALNEADGAVKWTVNLDMP 174 (376)
T ss_dssp ETTEEEEEETTSEEEEEETTTCCEEEEE-ECSSCCCSCCE----E--ETTEEEEECTTSEEEEEETTTCCEEEEEECCC-
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEE-eCCCceEcCCE----E--ECCEEEEEcCCCeEEEEECCCCcEEEEEeCCCC
Confidence 3567888889999999998876432211 11001111111 1 24578888999999999986554 443321110
Q ss_pred eEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEEEECCCccccceEEeeeccCCC-CccEEEEEECC--CCCeEE
Q 048012 239 YIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPG-RVAVTTCAWDC--DGKCIA 315 (616)
Q Consensus 239 ~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~-~~~v~~~~~sp--~g~~l~ 315 (616)
.......... ... + ..++.++.++.|..+|..+++.............. ...+..+...| .+..++
T Consensus 175 ----~~~~~~~~~~----~~~--~-~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~ 243 (376)
T 3q7m_A 175 ----SLSLRGESAP----TTA--F-GAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVF 243 (376)
T ss_dssp --------CCCCCC----EEE--T-TEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEE
T ss_pred ----ceeecCCCCc----EEE--C-CEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEE
Confidence 0001111111 111 2 36788888999999999887765544322110000 00000000111 256788
Q ss_pred EEeCCCcEEEEeCCCCCCCCCceeeecCCCCCeEEEEEcCCCCeEEEEecCCcEEEEeCCCCCCcceEecCCCCCCccee
Q 048012 316 GGIGDGSIQVWNLKPGWGSRPDIHVEKGHSDDITALKFSSDGRILLSRSFDGSLKVWDLRKMKEPLKVFEDLPNNYAQTN 395 (616)
Q Consensus 316 ~g~~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~v~~ 395 (616)
+++.+|.|..+|..++ ..+.... ......+.. ++..|+.++.++.|..+|..+++... ....... ..+..
T Consensus 244 ~~~~~g~l~~~d~~tG----~~~w~~~--~~~~~~~~~--~~~~l~~~~~~g~l~~~d~~tG~~~w-~~~~~~~-~~~~~ 313 (376)
T 3q7m_A 244 ALAYNGNLTALDLRSG----QIMWKRE--LGSVNDFIV--DGNRIYLVDQNDRVMALTIDGGVTLW-TQSDLLH-RLLTS 313 (376)
T ss_dssp EECTTSCEEEEETTTC----CEEEEEC--CCCEEEEEE--ETTEEEEEETTCCEEEEETTTCCEEE-EECTTTT-SCCCC
T ss_pred EEecCcEEEEEECCCC----cEEeecc--CCCCCCceE--ECCEEEEEcCCCeEEEEECCCCcEEE-eecccCC-CcccC
Confidence 8888999999999887 2332222 223444544 36678888889999999998765322 2221111 11223
Q ss_pred EEECCCCCEEEEeeccccccCCCceEEEEeCCCCceEEEEec
Q 048012 396 VAFSPDEQLFLTGTSVERESTTGGLLCFYDREKLELVSRVGI 437 (616)
Q Consensus 396 v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~~~~~~~~~~ 437 (616)
..+ .+..|++++ .+|.|++||..+++.+..+..
T Consensus 314 ~~~--~~~~l~v~~-------~~g~l~~~d~~tG~~~~~~~~ 346 (376)
T 3q7m_A 314 PVL--YNGNLVVGD-------SEGYLHWINVEDGRFVAQQKV 346 (376)
T ss_dssp CEE--ETTEEEEEC-------TTSEEEEEETTTCCEEEEEEC
T ss_pred CEE--ECCEEEEEe-------CCCeEEEEECCCCcEEEEEec
Confidence 333 356777777 789999999999999888765
No 241
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.63 E-value=2.2e-05 Score=77.50 Aligned_cols=228 Identities=9% Similarity=0.009 Sum_probs=136.2
Q ss_pred ceEEEEecCCCCeEEEEeCCCeEEEEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCC--CE
Q 048012 198 QVRNLSWSPTSDRFLCVTGSAQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDG--SL 275 (616)
Q Consensus 198 ~v~~l~~sp~g~~l~~~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg--~v 275 (616)
....++|+++++.+++-..++.|..||.++.....+ .. ......+++.+++. ++++..... .|
T Consensus 33 ~pegia~~~~g~lyv~d~~~~~I~~~d~~g~~~~~~-----------~~---~~~p~gia~~~dG~-l~vad~~~~~~~v 97 (306)
T 2p4o_A 33 FLENLASAPDGTIFVTNHEVGEIVSITPDGNQQIHA-----------TV---EGKVSGLAFTSNGD-LVATGWNADSIPV 97 (306)
T ss_dssp CEEEEEECTTSCEEEEETTTTEEEEECTTCCEEEEE-----------EC---SSEEEEEEECTTSC-EEEEEECTTSCEE
T ss_pred CcceEEECCCCCEEEEeCCCCeEEEECCCCceEEEE-----------eC---CCCceeEEEcCCCc-EEEEeccCCcceE
Confidence 477899999988666555788999999876532211 01 13578899999874 665554332 36
Q ss_pred EEEECCCccccceEEeeeccCCCCccEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCCCCCcee--------eecCCCCC
Q 048012 276 RIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWDCDGKCIAGGIGDGSIQVWNLKPGWGSRPDIH--------VEKGHSDD 347 (616)
Q Consensus 276 ~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~g~~dg~I~iwd~~~~~~~~~~~~--------~~~~h~~~ 347 (616)
..+|..+++.. .+... . .. .....++..+++..+++-..+|.|+++|...+. ..... .....-..
T Consensus 98 ~~~d~~~g~~~-~~~~~-~--~~-~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~--~~v~~~~~~~~~~~~~~~~~~ 170 (306)
T 2p4o_A 98 VSLVKSDGTVE-TLLTL-P--DA-IFLNGITPLSDTQYLTADSYRGAIWLIDVVQPS--GSIWLEHPMLARSNSESVFPA 170 (306)
T ss_dssp EEEECTTSCEE-EEEEC-T--TC-SCEEEEEESSSSEEEEEETTTTEEEEEETTTTE--EEEEEECGGGSCSSTTCCSCS
T ss_pred EEEcCCCCeEE-EEEeC-C--Cc-cccCcccccCCCcEEEEECCCCeEEEEeCCCCc--EeEEEECCccccccccCCCCc
Confidence 66676655432 12111 1 11 123455555555555555568899999976420 00100 00111123
Q ss_pred eEEEEEcCCCCeEEEE-ecCCcEEEEeCCCCCC--cceEecCCCCCCcceeEEECCCCCEEEEeeccccccCCCceEEEE
Q 048012 348 ITALKFSSDGRILLSR-SFDGSLKVWDLRKMKE--PLKVFEDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFY 424 (616)
Q Consensus 348 V~~l~~spdg~~l~s~-s~Dg~v~lwd~~~~~~--~~~~~~~~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iw 424 (616)
...| ++++++|+.+ ...+.|..|++..... ....+... .....++++++|+++++.. ..+.|.+|
T Consensus 171 pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~~---~~P~gi~vd~dG~l~va~~-------~~~~V~~~ 238 (306)
T 2p4o_A 171 ANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQ---TNIDDFAFDVEGNLYGATH-------IYNSVVRI 238 (306)
T ss_dssp EEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEES---CCCSSEEEBTTCCEEEECB-------TTCCEEEE
T ss_pred CCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEecc---CCCCCeEECCCCCEEEEeC-------CCCeEEEE
Confidence 4556 7888766554 4678899999874111 12222211 2367799999998777665 67889999
Q ss_pred eCCCCceEEEEecC-CCCCeEEEEEc---CCCCcEEEEec
Q 048012 425 DREKLELVSRVGIS-PACSVVQCAWH---PKLNQIFATAG 460 (616)
Q Consensus 425 d~~~~~~~~~~~~~-~~~~v~~~~~~---p~~~~l~~~~~ 460 (616)
|.. ++........ ......+|+|. |+++.|+++..
T Consensus 239 ~~~-G~~~~~~~~~~~~~~p~~~a~~g~~~d~~~LyVt~~ 277 (306)
T 2p4o_A 239 APD-RSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTN 277 (306)
T ss_dssp CTT-CCEEEEECGGGTCTTEEEEEECCSTTTTTEEEEEEC
T ss_pred CCC-CCEEEEeecccccCCceEEEEecccCCCCEEEEECC
Confidence 975 6653322222 22568999998 88888888876
No 242
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.62 E-value=3.2e-06 Score=79.71 Aligned_cols=183 Identities=11% Similarity=0.035 Sum_probs=123.2
Q ss_pred eEEEEEcCCCCCEEEEEeCCCCEEEEECCCccccceEEeeeccCCCCccEEEEEECCCCCeEEEEeCCCcEEEEeCCCCC
Q 048012 253 LTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWDCDGKCIAGGIGDGSIQVWNLKPGW 332 (616)
Q Consensus 253 v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~g~~dg~I~iwd~~~~~ 332 (616)
...+.|+. +.++++.+.+|.|+++|+.+++....+ .... ...-.+++.. +++.++.-.++.+.+||..+.
T Consensus 57 tqGL~~~~--~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~-----~FgeGit~~g-~~Ly~ltw~~~~v~V~D~~Tl- 126 (268)
T 3nok_A 57 TQGLVFHQ--GHFFESTGHQGTLRQLSLESAQPVWME-RLGN-----IFAEGLASDG-ERLYQLTWTEGLLFTWSGMPP- 126 (268)
T ss_dssp EEEEEEET--TEEEEEETTTTEEEECCSSCSSCSEEE-ECTT-----CCEEEEEECS-SCEEEEESSSCEEEEEETTTT-
T ss_pred cceEEEEC--CEEEEEcCCCCEEEEEECCCCcEEeEE-CCCC-----cceeEEEEeC-CEEEEEEccCCEEEEEECCcC-
Confidence 46777874 468888888999999999998877766 3211 1123355542 344455557899999999875
Q ss_pred CCCCceeeecCCCCCeEEEEEcCCCCeEEEEecCCcEEEEeCCCCCCcceEecCCCCCC---cceeEEECCCCCEEEEee
Q 048012 333 GSRPDIHVEKGHSDDITALKFSSDGRILLSRSFDGSLKVWDLRKMKEPLKVFEDLPNNY---AQTNVAFSPDEQLFLTGT 409 (616)
Q Consensus 333 ~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~---~v~~v~fspdg~~l~~gs 409 (616)
..+..+..- ..-..|+ +|++.|+.+..+++|.++|..+.+. +..+....... .+..+.|. +|++.+..-
T Consensus 127 ---~~~~ti~~~-~eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v-~~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw 198 (268)
T 3nok_A 127 ---QRERTTRYS-GEGWGLC--YWNGKLVRSDGGTMLTFHEPDGFAL-VGAVQVKLRGQPVELINELECA-NGVIYANIW 198 (268)
T ss_dssp ---EEEEEEECS-SCCCCEE--EETTEEEEECSSSEEEEECTTTCCE-EEEEECEETTEECCCEEEEEEE-TTEEEEEET
T ss_pred ---cEEEEEeCC-CceeEEe--cCCCEEEEECCCCEEEEEcCCCCeE-EEEEEeCCCCcccccccccEEe-CCEEEEEEC
Confidence 455554432 2223444 5678888777789999999987653 33332211111 24556776 776554443
Q ss_pred ccccccCCCceEEEEeCCCCceEEEEecC------------CCCCeEEEEEcCCCCcEEEEec
Q 048012 410 SVERESTTGGLLCFYDREKLELVSRVGIS------------PACSVVQCAWHPKLNQIFATAG 460 (616)
Q Consensus 410 ~~~~~~~~dg~i~iwd~~~~~~~~~~~~~------------~~~~v~~~~~~p~~~~l~~~~~ 460 (616)
.++.|.+.|..+++.+..+.+. .....+.++|+|+.+.|++++.
T Consensus 199 -------~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK 254 (268)
T 3nok_A 199 -------HSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGK 254 (268)
T ss_dssp -------TCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEET
T ss_pred -------CCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCC
Confidence 6789999999999999999764 1235688999999999988875
No 243
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=98.61 E-value=1.4e-05 Score=81.37 Aligned_cols=270 Identities=9% Similarity=-0.020 Sum_probs=146.9
Q ss_pred CCEEEEEEcCCcEEEEeCCCCccccccceecC----CCCCCceEEEEecCCCCeEEEEeCCCeEEEEECCCCe-eeeEee
Q 048012 161 GSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLE----PSEGHQVRNLSWSPTSDRFLCVTGSAQAKIYDRDGLT-LGEFVK 235 (616)
Q Consensus 161 g~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~----~~~~~~v~~l~~sp~g~~l~~~s~d~~v~vwd~~~~~-~~~~~~ 235 (616)
+..|+.++.++.|..||..++........... ......+.+ ....++..+++++.++.|..+|..+++ ++....
T Consensus 53 ~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~ 131 (376)
T 3q7m_A 53 DNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSG-GVTVSGGHVYIGSEKAQVYALNTSDGTVAWQTKV 131 (376)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEE-EEEEETTEEEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred CCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCccccc-CceEeCCEEEEEcCCCEEEEEECCCCCEEEEEeC
Confidence 56777788888999999876543221111000 000122222 222245678889999999999987554 333311
Q ss_pred CceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEEEECCCccccceEEeeeccCCCCccEEEEEECCCCCeEE
Q 048012 236 GDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWDCDGKCIA 315 (616)
Q Consensus 236 ~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~ 315 (616)
.. ...... ... + ..++.++.++.|..+|..+++............... ....... .+..++
T Consensus 132 ~~---------~~~~~p----~~~--~-~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~-~~~~~~~--~~~~v~ 192 (376)
T 3q7m_A 132 AG---------EALSRP----VVS--D-GLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLR-GESAPTT--AFGAAV 192 (376)
T ss_dssp SS---------CCCSCC----EEE--T-TEEEEECTTSEEEEEETTTCCEEEEEECCC-----C-CCCCCEE--ETTEEE
T ss_pred CC---------ceEcCC----EEE--C-CEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeec-CCCCcEE--ECCEEE
Confidence 10 001111 111 2 378888899999999998887665543221100000 0011111 145678
Q ss_pred EEeCCCcEEEEeCCCCCCCCCceeeecCCCC-------CeEEEEEcC--CCCeEEEEecCCcEEEEeCCCCCCcceEecC
Q 048012 316 GGIGDGSIQVWNLKPGWGSRPDIHVEKGHSD-------DITALKFSS--DGRILLSRSFDGSLKVWDLRKMKEPLKVFED 386 (616)
Q Consensus 316 ~g~~dg~I~iwd~~~~~~~~~~~~~~~~h~~-------~V~~l~~sp--dg~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~ 386 (616)
+++.+|.|..+|..++ ..+........ .+..+...| .+..|+.++.++.|..+|..+++... ...
T Consensus 193 ~g~~~g~l~~~d~~tG----~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~~w-~~~- 266 (376)
T 3q7m_A 193 VGGDNGRVSAVLMEQG----QMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIMW-KRE- 266 (376)
T ss_dssp ECCTTTEEEEEETTTC----CEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTTCCEEE-EEC-
T ss_pred EEcCCCEEEEEECCCC----cEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCCcEEe-ecc-
Confidence 8888999999999877 23322221100 000011111 24677778889999999998765322 221
Q ss_pred CCCCCcceeEEECCCCCEEEEeeccccccCCCceEEEEeCCCCceEEEEecCCCCCeEEEEEcCCCCcEEEEeccCCCCc
Q 048012 387 LPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREKLELVSRVGISPACSVVQCAWHPKLNQIFATAGDKSQGG 466 (616)
Q Consensus 387 ~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~~~~ 466 (616)
. .....+.. ++..|++++ .++.|..+|..+++.+..........+...... +..|++++. ++
T Consensus 267 ~---~~~~~~~~--~~~~l~~~~-------~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~--~~~l~v~~~----~g 328 (376)
T 3q7m_A 267 L---GSVNDFIV--DGNRIYLVD-------QNDRVMALTIDGGVTLWTQSDLLHRLLTSPVLY--NGNLVVGDS----EG 328 (376)
T ss_dssp C---CCEEEEEE--ETTEEEEEE-------TTCCEEEEETTTCCEEEEECTTTTSCCCCCEEE--TTEEEEECT----TS
T ss_pred C---CCCCCceE--ECCEEEEEc-------CCCeEEEEECCCCcEEEeecccCCCcccCCEEE--CCEEEEEeC----CC
Confidence 1 11333333 466777777 788999999999998877652122222222222 356666654 44
Q ss_pred eEEEeccc
Q 048012 467 THILYDPR 474 (616)
Q Consensus 467 ~~~v~~~~ 474 (616)
.+.+++..
T Consensus 329 ~l~~~d~~ 336 (376)
T 3q7m_A 329 YLHWINVE 336 (376)
T ss_dssp EEEEEETT
T ss_pred eEEEEECC
Confidence 55555543
No 244
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=98.61 E-value=1.7e-06 Score=86.25 Aligned_cols=255 Identities=14% Similarity=0.097 Sum_probs=146.5
Q ss_pred cccEEEEEECCCCCEEEEEEcCCcEEEEeCCCCccccccceecCCCCCCceEEEEecCCCCeEEEEeCCCeEEEEECCCC
Q 048012 149 TKIVSALAVDHSGSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSDRFLCVTGSAQAKIYDRDGL 228 (616)
Q Consensus 149 ~~~V~~v~~sp~g~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~s~d~~v~vwd~~~~ 228 (616)
...+.++.+..+|.+++ ++.+ |..||..+ . ....+. ..........+. +..|.+++.++.|..+|..+.
T Consensus 59 ~~~~~~~~~~~~g~l~v-~t~~--l~~~d~~g-~-~~~~~~----~~~~~~~~~~~~--~~~l~v~t~~~~l~~~d~~g~ 127 (330)
T 3hxj_A 59 EIIECRPSIGKDGTIYF-GSDK--VYAINPDG-T-EKWRFD----TKKAIVSDFTIF--EDILYVTSMDGHLYAINTDGT 127 (330)
T ss_dssp GEEEECCEETTTTEECC-SSCE--EEEECCCG-G-GGGGSC----C-----CCEEEE--TTEEEEECTTSEEEEECTTSC
T ss_pred CCcccceEEecCCcEEE-ecCc--EEEECCCC-c-EEEEEE----CCCCcccCceEE--CCEEEEEecCCEEEEEcCCCC
Confidence 44567788877775444 4444 88887532 2 111111 111111222222 566778888999999998844
Q ss_pred eeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEEEECCCccccceEEeeeccCCCCccEEEEEEC
Q 048012 229 TLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWD 308 (616)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 308 (616)
...... .+...+.++...+++ .|+.++.++.|..||.. ++........ ...+.++.+.
T Consensus 128 ~~~~~~-------------~~~~~~~~~~~~~~g--~l~vgt~~~~l~~~d~~-g~~~~~~~~~------~~~~~~~~~d 185 (330)
T 3hxj_A 128 EKWRFK-------------TKKAIYATPIVSEDG--TIYVGSNDNYLYAINPD-GTEKWRFKTN------DAITSAASIG 185 (330)
T ss_dssp EEEEEE-------------CSSCCCSCCEECTTS--CEEEECTTSEEEEECTT-SCEEEEEECS------SCCCSCCEEC
T ss_pred EEEEEc-------------CCCceeeeeEEcCCC--EEEEEcCCCEEEEECCC-CCEeEEEecC------CCceeeeEEc
Confidence 433321 112234445555554 46667888999999987 5443333211 1145566777
Q ss_pred CCCCeEEEEeCCCcEEEEeCCCCCCCCCceeeecCCCCCeEEEEEcCCCCeEEEEecCCcEEEEeCCCCCCcceEecCCC
Q 048012 309 CDGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHSDDITALKFSSDGRILLSRSFDGSLKVWDLRKMKEPLKVFEDLP 388 (616)
Q Consensus 309 p~g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~ 388 (616)
.++.+++ ++ +.|..|| .++ ............+.++.+.++|. |..++.++.|..+|.. +.. +..+..
T Consensus 186 ~~g~l~v-~t--~~l~~~d-~~g----~~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~~gl~~~~~~-g~~-~~~~~~-- 252 (330)
T 3hxj_A 186 KDGTIYF-GS--DKVYAIN-PDG----TEKWNFYAGYWTVTRPAISEDGT-IYVTSLDGHLYAINPD-GTE-KWRFKT-- 252 (330)
T ss_dssp TTCCEEE-ES--SSEEEEC-TTS----CEEEEECCSSCCCSCCEECTTSC-EEEEETTTEEEEECTT-SCE-EEEEEC--
T ss_pred CCCEEEE-Ee--CEEEEEC-CCC----cEEEEEccCCcceeceEECCCCe-EEEEcCCCeEEEECCC-CCE-eEEeeC--
Confidence 7777554 44 8899999 554 33444444456688889988875 4556667888888753 332 333322
Q ss_pred CCCcceeEEECCCCCEEEEeeccccccCCCceEEEEeCCCCceEEEEecCCCCCeEEEEEcCCCCcEEEEec
Q 048012 389 NNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREKLELVSRVGISPACSVVQCAWHPKLNQIFATAG 460 (616)
Q Consensus 389 ~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~ 460 (616)
....+.++.+.+++.+ .+++ .+|.|..+|. +++.+..+... ...+.++...+++. |++++.
T Consensus 253 ~~~~~~~~~~~~~g~l-~v~t-------~~ggl~~~d~-~g~~~~~~~~~-~~~~~~~~~d~~g~-l~~gt~ 313 (330)
T 3hxj_A 253 GKRIESSPVIGNTDTI-YFGS-------YDGHLYAINP-DGTEKWNFETG-SWIIATPVIDENGT-IYFGTR 313 (330)
T ss_dssp SSCCCSCCEECTTSCE-EEEC-------TTCEEEEECT-TSCEEEEEECS-SCCCSCCEECTTCC-EEEECT
T ss_pred CCCccccceEcCCCeE-EEec-------CCCCEEEECC-CCcEEEEEEcC-CccccceEEcCCCE-EEEEcC
Confidence 1222455667666654 4555 6778999996 78777776542 33455556656543 555554
No 245
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.59 E-value=2.9e-06 Score=80.04 Aligned_cols=184 Identities=14% Similarity=0.111 Sum_probs=119.9
Q ss_pred ceEEEEEcCCCCCEEEEEeCCC--CEEEEECCCccccceEEeeeccCCCCccEEEEEECCCCCeEEEE-eCCCcEEEEeC
Q 048012 252 GLTCGEWHPKTKETILTSSEDG--SLRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWDCDGKCIAGG-IGDGSIQVWNL 328 (616)
Q Consensus 252 ~v~~~~~~p~~~~~l~s~s~Dg--~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~g-~~dg~I~iwd~ 328 (616)
....+.|+ ++ .++.+.+.+| .|+++|+.+++....+.... ....-.+++ .++.|+.. -.++.+.+||.
T Consensus 44 ftqGL~~~-~~-~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~-----~~FgeGit~--~g~~ly~ltw~~~~v~v~D~ 114 (262)
T 3nol_A 44 FTEGFFYR-NG-YFYESTGLNGRSSIRKVDIESGKTLQQIELGK-----RYFGEGISD--WKDKIVGLTWKNGLGFVWNI 114 (262)
T ss_dssp EEEEEEEE-TT-EEEEEEEETTEEEEEEECTTTCCEEEEEECCT-----TCCEEEEEE--ETTEEEEEESSSSEEEEEET
T ss_pred ccceEEEE-CC-EEEEECCCCCCceEEEEECCCCcEEEEEecCC-----ccceeEEEE--eCCEEEEEEeeCCEEEEEEC
Confidence 34677888 44 5777777766 89999999987766554321 111223333 34455444 45889999999
Q ss_pred CCCCCCCCceeeecCCCCCeEEEEEcCCCCeEEEEecCCcEEEEeCCCCCCcceEecCCCCCCc---ceeEEECCCCCEE
Q 048012 329 KPGWGSRPDIHVEKGHSDDITALKFSSDGRILLSRSFDGSLKVWDLRKMKEPLKVFEDLPNNYA---QTNVAFSPDEQLF 405 (616)
Q Consensus 329 ~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~---v~~v~fspdg~~l 405 (616)
.+. ..+..+.... .=..++ +|+..|+.+..+++|.++|..+.+. +..+.......+ +..+.|. +|++.
T Consensus 115 ~t~----~~~~ti~~~~-eG~glt--~dg~~L~~SdGs~~i~~iDp~T~~v-~~~I~V~~~g~~~~~lNELe~~-~G~ly 185 (262)
T 3nol_A 115 RNL----RQVRSFNYDG-EGWGLT--HNDQYLIMSDGTPVLRFLDPESLTP-VRTITVTAHGEELPELNELEWV-DGEIF 185 (262)
T ss_dssp TTC----CEEEEEECSS-CCCCEE--ECSSCEEECCSSSEEEEECTTTCSE-EEEEECEETTEECCCEEEEEEE-TTEEE
T ss_pred ccC----cEEEEEECCC-CceEEe--cCCCEEEEECCCCeEEEEcCCCCeE-EEEEEeccCCccccccceeEEE-CCEEE
Confidence 876 4555554322 223343 5677777776678899999987653 333322111112 3446776 67655
Q ss_pred EEeeccccccCCCceEEEEeCCCCceEEEEecCC-----------CCCeEEEEEcCCCCcEEEEec
Q 048012 406 LTGTSVERESTTGGLLCFYDREKLELVSRVGISP-----------ACSVVQCAWHPKLNQIFATAG 460 (616)
Q Consensus 406 ~~gs~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~-----------~~~v~~~~~~p~~~~l~~~~~ 460 (616)
+..- .++.|.+.|..+++.+..+.+.. ....+.++|+|+.+.|++++.
T Consensus 186 an~w-------~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK 244 (262)
T 3nol_A 186 ANVW-------QTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK 244 (262)
T ss_dssp EEET-------TSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred EEEc-------cCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence 4443 67899999999999999997631 135688999999999998885
No 246
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.56 E-value=1.3e-05 Score=89.48 Aligned_cols=235 Identities=7% Similarity=0.016 Sum_probs=128.1
Q ss_pred ceEEEEec-CCCCeEEEEeC-C----CeEEEEECCCC-eeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEe
Q 048012 198 QVRNLSWS-PTSDRFLCVTG-S----AQAKIYDRDGL-TLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSS 270 (616)
Q Consensus 198 ~v~~l~~s-p~g~~l~~~s~-d----~~v~vwd~~~~-~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s 270 (616)
.+...+|| |+|++|+.+.. + .+|+++|+.++ +... ..+ ......+.|+|+++.++++..
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~-----------~~~---~~~~~~~~WspDg~~l~y~~~ 240 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIA-----------DKV---SGTNGEIVWGPDHTSLFYVTK 240 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCC-----------CCE---EEECSCCEECSSTTEEEEEEE
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCC-----------ccc---cCceeeEEEecCCCEEEEEEE
Confidence 57889999 99998886643 2 25999999876 5210 000 111346789999865555443
Q ss_pred CC----CCEEEEECCCccccceEEeeeccCCCCccEEEEEECCCCCeEEEEeC---CCcEEEEeCCCCCCCCCc--eeee
Q 048012 271 ED----GSLRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWDCDGKCIAGGIG---DGSIQVWNLKPGWGSRPD--IHVE 341 (616)
Q Consensus 271 ~D----g~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~g~~---dg~I~iwd~~~~~~~~~~--~~~~ 341 (616)
.. ..|+++++.+......++... ........+.|+|+|++|+.... ...|+++|+.++. ... ....
T Consensus 241 d~~~~~~~v~~~~lgt~~~~~~lv~~~---~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~--~~~~~~~l~ 315 (751)
T 2xe4_A 241 DETLRENKVWRHVMGKLQSEDVCLYEE---HNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGN--AHNTLEIVR 315 (751)
T ss_dssp CTTCCEEEEEEEETTSCGGGCEEEEEC---CCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCT--TCCCEEESS
T ss_pred CCCCCCCEEEEEECCCCchhcEEEEec---CCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCC--CCceeEEee
Confidence 22 358888887654332222111 11124568899999998887663 3468889987641 112 2233
Q ss_pred cCCCCCeEEEEEcCCCCeEEEEecC--C--cEEEEeCCCCCCcce-EecCCCCCCcceeEEECCCCCEEEEeeccccccC
Q 048012 342 KGHSDDITALKFSSDGRILLSRSFD--G--SLKVWDLRKMKEPLK-VFEDLPNNYAQTNVAFSPDEQLFLTGTSVEREST 416 (616)
Q Consensus 342 ~~h~~~V~~l~~spdg~~l~s~s~D--g--~v~lwd~~~~~~~~~-~~~~~~~~~~v~~v~fspdg~~l~~gs~~~~~~~ 416 (616)
........++.|+.++.+++....+ + .|.++|+.+...... .+. ......+..+.+. +..|+....
T Consensus 316 ~~~~~~~~s~~~~~g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~-~~~~~~l~~~~~~--~~~lv~~~~------ 386 (751)
T 2xe4_A 316 PREKGVRYDVQMHGTSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVD-HSEDVFMESIAVR--SNYLVVAGR------ 386 (751)
T ss_dssp CCCTTCCEEEEEETTTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEEC-CCSSEEEEEEEEC--SSEEEEEEE------
T ss_pred cCCCCceEEEeeeeCCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEEC-CCCCcEEEEEEEE--CCEEEEEEE------
Confidence 3344556777765544444444443 2 566677654222122 222 2222234555554 455544432
Q ss_pred CCc--eEEEEeC-------CCCceEEEEecCCCCCeEEEEE----cCCCCcEEEEec
Q 048012 417 TGG--LLCFYDR-------EKLELVSRVGISPACSVVQCAW----HPKLNQIFATAG 460 (616)
Q Consensus 417 ~dg--~i~iwd~-------~~~~~~~~~~~~~~~~v~~~~~----~p~~~~l~~~~~ 460 (616)
.++ .|+++++ .+++.+..+.+.....+..+.+ .+++..|+....
T Consensus 387 ~~g~~~l~~~dl~~~~~~~~~g~~~~~l~l~~~~~~~~~~~~~~~~~~~~~l~~~~s 443 (751)
T 2xe4_A 387 RAGLTRIWTMMADSQDGVFKAGTGLREVVMEEPIFTVHLVESQMLEYEEPTFRMEYS 443 (751)
T ss_dssp ETTEEEEEEEECCTTTSCCCTTTCCEECCCCCSSCEEEECGGGCCCTTCSCEEEEEE
T ss_pred eCCEEEEEEEecccccccccCCccceEECCCCceeEEEeccCcccCCCCCEEEEEEe
Confidence 455 4666775 3444245554433333445544 346665555544
No 247
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.55 E-value=4.1e-06 Score=92.21 Aligned_cols=281 Identities=12% Similarity=0.042 Sum_probs=150.6
Q ss_pred EEEECC-CCCEEEEEEcCC-----------cEEEEeCCCCccccccceecCCCCCCceEEEEecCCCCeEEEEeC-CCeE
Q 048012 154 ALAVDH-SGSRVLSGSYDY-----------TVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSDRFLCVTG-SAQA 220 (616)
Q Consensus 154 ~v~~sp-~g~~lasgs~Dg-----------~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~s~-d~~v 220 (616)
++++.+ +|++++.|+.+. .+.+||..+.. ...+............++++..++..+++|+. +..+
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~--w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v 267 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGI--VSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKT 267 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCC--BCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCE
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCc--EEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCce
Confidence 446666 888889888653 58889887642 22222222222233445778889988888874 4689
Q ss_pred EEEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEe-CC-----CCEEEEECCCccccceEE----
Q 048012 221 KIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSS-ED-----GSLRIWDVNEFKSQKQVI---- 290 (616)
Q Consensus 221 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s-~D-----g~v~iwd~~~~~~~~~~~---- 290 (616)
.+||..+...... ..+..... -.+++..+++ .+++.|+ .+ ..+.+||..+..... +.
T Consensus 268 ~~yd~~t~~W~~~----------~~~~~~R~-~~s~~~~~dg-~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~-~~~~~~ 334 (656)
T 1k3i_A 268 SLYDSSSDSWIPG----------PDMQVARG-YQSSATMSDG-RVFTIGGSWSGGVFEKNGEVYSPSSKTWTS-LPNAKV 334 (656)
T ss_dssp EEEEGGGTEEEEC----------CCCSSCCS-SCEEEECTTS-CEEEECCCCCSSSCCCCEEEEETTTTEEEE-ETTSCS
T ss_pred EEecCcCCceeEC----------CCCCcccc-ccceEEecCC-eEEEEeCcccCCcccccceEeCCCCCccee-CCCccc
Confidence 9999887654322 11111111 1234455656 5888887 44 569999997643211 10
Q ss_pred eeeccCCCCccEEEEEECCCCCeEEEEeCCC---------cEEEEeCCCCCCCCCceeeecCC---------CCCeEEEE
Q 048012 291 KPKLARPGRVAVTTCAWDCDGKCIAGGIGDG---------SIQVWNLKPGWGSRPDIHVEKGH---------SDDITALK 352 (616)
Q Consensus 291 ~~~~~~~~~~~v~~~~~sp~g~~l~~g~~dg---------~I~iwd~~~~~~~~~~~~~~~~h---------~~~V~~l~ 352 (616)
.+.....+ ...+..++++++.|+.+| .|..||..+.. .......+ ...-.++.
T Consensus 335 ~p~~~~~~-----~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~----w~~~~~~~~~~~~~~~~~~~~~av~ 405 (656)
T 1k3i_A 335 NPMLTADK-----QGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSG----DVKSAGKRQSNRGVAPDAMCGNAVM 405 (656)
T ss_dssp GGGCCCCT-----TGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTC----EEEEEEECEETTEECCCCBTCEEEE
T ss_pred cccccccc-----cceeecCCceEEEECCCCcEEEecCccceeeeecCCcc----eeecCCccccccccCCCCCCCceEe
Confidence 01111000 022345666666666554 46778877541 11111111 11234555
Q ss_pred Ec-CCCCeEEEEecCC-----------cEEEEeCCCCCCcceEec--CCCCCCcceeEEECCCCCEEEEeeccccc----
Q 048012 353 FS-SDGRILLSRSFDG-----------SLKVWDLRKMKEPLKVFE--DLPNNYAQTNVAFSPDEQLFLTGTSVERE---- 414 (616)
Q Consensus 353 ~s-pdg~~l~s~s~Dg-----------~v~lwd~~~~~~~~~~~~--~~~~~~~v~~v~fspdg~~l~~gs~~~~~---- 414 (616)
|. .++++++.|+.++ .|.+||..+.. ..... ..+....-.++++.|++++++.|+.....
T Consensus 406 ~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~--W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~ 483 (656)
T 1k3i_A 406 YDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSP--NTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFED 483 (656)
T ss_dssp EETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCC--EEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCC
T ss_pred ccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCC--eeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCcCC
Confidence 54 3788888888543 57788876532 22221 22222223456778899999999842110
Q ss_pred cCCCceEEEEeCCCCceEEEEecC-CCCCeEEEEEcCCCCcEEEEec
Q 048012 415 STTGGLLCFYDREKLELVSRVGIS-PACSVVQCAWHPKLNQIFATAG 460 (616)
Q Consensus 415 ~~~dg~i~iwd~~~~~~~~~~~~~-~~~~v~~~~~~p~~~~l~~~~~ 460 (616)
...-..+.+||..+.+....-... .......+.+.|+++.+++|+.
T Consensus 484 ~~~~~~v~~ydp~t~~W~~~~~~~~~R~~hs~a~ll~dg~v~v~GG~ 530 (656)
T 1k3i_A 484 STPVFTPEIYVPEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGG 530 (656)
T ss_dssp CSBCCCCEEEEGGGTEEEECCCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred CCcccceEEEcCCCCceeecCCCCCccccccHhhcCCCcEEEecCCC
Confidence 011256899998776533211111 1112234455677776666664
No 248
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.55 E-value=0.0002 Score=80.70 Aligned_cols=281 Identities=11% Similarity=0.075 Sum_probs=170.0
Q ss_pred cccEEEEEECCCCCEEEEEEcCCcEEEEeCCCCccccccceec----CCCCCCceEEEEecCCCCeEEEEeCCCeEEEEE
Q 048012 149 TKIVSALAVDHSGSRVLSGSYDYTVRMYDFQGMNSRLQSFRQL----EPSEGHQVRNLSWSPTSDRFLCVTGSAQAKIYD 224 (616)
Q Consensus 149 ~~~V~~v~~sp~g~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~----~~~~~~~v~~l~~sp~g~~l~~~s~d~~v~vwd 224 (616)
...|.++..+.+|.+.+ |+.++-|.+||..+.. ...+... .......|.++...++|... +++.. -|.+|+
T Consensus 214 ~~~i~~i~~d~~g~lwi-gt~~~Gl~~~~~~~~~--~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lW-igt~~-Gl~~~~ 288 (795)
T 4a2l_A 214 TKQIQAILQQSPTRIWV-ATEGAGLFLINPKTKE--IKNYLHSPSNPKSISSNYIRSLAMDSQNRLW-IGTFN-DLNIYH 288 (795)
T ss_dssp CCCEEEEEEEETTEEEE-EEBSSCEEEEETTTTE--EEEECCCTTCTTSCSCSBEEEEEECTTSCEE-EEESS-CEEEEE
T ss_pred CCeeEEEEEcCCCCEEE-EECCCCeEEEeCCCCe--EEEeecCCCCccccCCCeEEEEEEcCCCCEE-EEeCC-hhheEc
Confidence 45688888887776555 4544448888876532 1111110 11224569999999888754 46655 688999
Q ss_pred CCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEEEECCCccccceEEeee-ccCCCCccEE
Q 048012 225 RDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKPK-LARPGRVAVT 303 (616)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~-~~~~~~~~v~ 303 (616)
..+..+..+.... .....-....|.++...+++ .|..|+.++-|.+|+...... ..+.... ...-....|.
T Consensus 289 ~~~~~~~~~~~~~-----~~~~~l~~~~i~~i~~D~~g--~lWigt~~~Gl~~~~~~~~~~-~~~~~~~~~~~l~~~~V~ 360 (795)
T 4a2l_A 289 EGTDSFASYSSNP-----VENGSLSQRSVRSIFMDSQG--GMWLGTYFGGLNYYHPIRNRF-KNIRNIPYKNSLSDNVVS 360 (795)
T ss_dssp TTTTEEEEECCCT-----TSTTSCSSSCEEEEEECTTS--CEEEEESSSCEEEECGGGGSS-EEECCCTTSSSCSCSSEE
T ss_pred CCCCeEEEEecCC-----CCCCCCCCCcEEEEEEeCCc--CEEEEECCCCeEEeCCCcccc-eEEcCCCCCCCCCCCeeE
Confidence 8877654331110 00011234568999988876 366677777799998754321 1111110 0011223699
Q ss_pred EEEECCCCCeEEEEeCCCcEEEEeCCCCCCCCCceeeec--------CCCCCeEEEEEcCCCCeEEEEecCCcEEEEeCC
Q 048012 304 TCAWDCDGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEK--------GHSDDITALKFSSDGRILLSRSFDGSLKVWDLR 375 (616)
Q Consensus 304 ~~~~sp~g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~--------~h~~~V~~l~~spdg~~l~s~s~Dg~v~lwd~~ 375 (616)
++....+|+ |.+|+.++-|..|+..++ ....... -....|.++...++|++|..|+.++-|.+||..
T Consensus 361 ~i~~d~~g~-lWiGt~~~Gl~~~~~~~~----~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~ 435 (795)
T 4a2l_A 361 CIVEDKDKN-LWIGTNDGGLNLYNPITQ----RFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRN 435 (795)
T ss_dssp EEEECTTSC-EEEEESSSCEEEECTTTC----CEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETT
T ss_pred EEEECCCCC-EEEEECCCCeEEEcCCCC----cEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCC
Confidence 999988886 555777878999998764 1211111 123569999998888856677777779999987
Q ss_pred CCCCcceEecCC---CCCCcceeEEECCCCCEEEEeeccccccCCCceEEEEeCCCCceEEEEec-----CCCCCeEEEE
Q 048012 376 KMKEPLKVFEDL---PNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREKLELVSRVGI-----SPACSVVQCA 447 (616)
Q Consensus 376 ~~~~~~~~~~~~---~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~~~~~~~~~~-----~~~~~v~~~~ 447 (616)
+.. +..+... .....|.++...++|.+.+.. . +-|.+||..+++....... -....|.++.
T Consensus 436 ~~~--~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt--------~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~ 504 (795)
T 4a2l_A 436 SGQ--VENFNQRNSQLVNENVYAILPDGEGNLWLGT--------L-SALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLF 504 (795)
T ss_dssp TCC--EEEECTTTSCCSCSCEEEEEECSSSCEEEEE--------S-SCEEEEETTTTEEEECCBCTTCCBCCCCCEEEEE
T ss_pred CCc--EEEeecCCCCcCCCeeEEEEECCCCCEEEEe--------c-CceeEEeCCCCeEEEccccccccccCCceEEEEE
Confidence 643 2222210 122458889999888866554 4 3488899887654322111 0225688888
Q ss_pred EcCCCCcEEEE
Q 048012 448 WHPKLNQIFAT 458 (616)
Q Consensus 448 ~~p~~~~l~~~ 458 (616)
..+++...+.+
T Consensus 505 ~d~~g~lWigt 515 (795)
T 4a2l_A 505 RDSHKRLWIGG 515 (795)
T ss_dssp ECTTCCEEEEE
T ss_pred ECCCCCEEEEe
Confidence 88887655544
No 249
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=98.54 E-value=3.4e-06 Score=83.93 Aligned_cols=266 Identities=15% Similarity=0.076 Sum_probs=150.9
Q ss_pred EEEECCCCCEEEEEEcCCcEEEEeCCCCccccccceecCCCCCCceEEEEecCCCCeEEEEeCCCeEEEEECCCCeeeeE
Q 048012 154 ALAVDHSGSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSDRFLCVTGSAQAKIYDRDGLTLGEF 233 (616)
Q Consensus 154 ~v~~sp~g~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~s~d~~v~vwd~~~~~~~~~ 233 (616)
++.++.+| .|..++.++.|..|| .++..... .......+.++....++. |++++.+ |..||..+..++.+
T Consensus 24 ~~~~d~~g-~l~v~t~~~~l~~~d-~~g~~~~~-----~~~~~~~~~~~~~~~~g~-l~v~t~~--l~~~d~~g~~~~~~ 93 (330)
T 3hxj_A 24 SPILAKNG-TIYLGSSNKNLYAIN-TDGSVKWF-----FKSGEIIECRPSIGKDGT-IYFGSDK--VYAINPDGTEKWRF 93 (330)
T ss_dssp CCEECTTS-CEECSSTTTTTEEEC-TTSCEEES-----SCGGGEEEECCEETTTTE-ECCSSCE--EEEECCCGGGGGGS
T ss_pred CceEccCC-eEEEEcCCCEEEEEC-CCCcEEEE-----EecCCCcccceEEecCCc-EEEecCc--EEEECCCCcEEEEE
Confidence 34555555 455667788899998 54432111 111223356677766665 4445444 88888654433221
Q ss_pred eeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEEEECCCccccceEEeeeccCCCCccEEEEEECCCCCe
Q 048012 234 VKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWDCDGKC 313 (616)
Q Consensus 234 ~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~ 313 (616)
...........+. + ..|+.++.++.|..+|.. ++....... ....+.++...+++.
T Consensus 94 -------------~~~~~~~~~~~~~--~-~~l~v~t~~~~l~~~d~~-g~~~~~~~~------~~~~~~~~~~~~~g~- 149 (330)
T 3hxj_A 94 -------------DTKKAIVSDFTIF--E-DILYVTSMDGHLYAINTD-GTEKWRFKT------KKAIYATPIVSEDGT- 149 (330)
T ss_dssp -------------CC-----CCEEEE--T-TEEEEECTTSEEEEECTT-SCEEEEEEC------SSCCCSCCEECTTSC-
T ss_pred -------------ECCCCcccCceEE--C-CEEEEEecCCEEEEEcCC-CCEEEEEcC------CCceeeeeEEcCCCE-
Confidence 1111111222222 2 467888888999999987 443332221 111345556676776
Q ss_pred EEEEeCCCcEEEEeCCCCCCCCCceeeecCCCCCeEEEEEcCCCCeEEEEecCCcEEEEeCCCCCCcceEecCCCCCCcc
Q 048012 314 IAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHSDDITALKFSSDGRILLSRSFDGSLKVWDLRKMKEPLKVFEDLPNNYAQ 393 (616)
Q Consensus 314 l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~v 393 (616)
|++++.++.|..||.. + ............+.++.+.+++.+++.. +.|..|| .++.. +..+. .....+
T Consensus 150 l~vgt~~~~l~~~d~~-g----~~~~~~~~~~~~~~~~~~d~~g~l~v~t---~~l~~~d-~~g~~-~~~~~--~~~~~~ 217 (330)
T 3hxj_A 150 IYVGSNDNYLYAINPD-G----TEKWRFKTNDAITSAASIGKDGTIYFGS---DKVYAIN-PDGTE-KWNFY--AGYWTV 217 (330)
T ss_dssp EEEECTTSEEEEECTT-S----CEEEEEECSSCCCSCCEECTTCCEEEES---SSEEEEC-TTSCE-EEEEC--CSSCCC
T ss_pred EEEEcCCCEEEEECCC-C----CEeEEEecCCCceeeeEEcCCCEEEEEe---CEEEEEC-CCCcE-EEEEc--cCCcce
Confidence 5667788999999987 5 3444444445567788888888765544 7899999 54432 22222 122447
Q ss_pred eeEEECCCCCEEEEeeccccccCCCceEEEEeCCCCceEEEEecCCCCCeEEEEEcCCCCcEEEEeccCCCCceEEEecc
Q 048012 394 TNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREKLELVSRVGISPACSVVQCAWHPKLNQIFATAGDKSQGGTHILYDP 473 (616)
Q Consensus 394 ~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~~~~~~~v~~~ 473 (616)
.++.+.++|.+.+. + .++.|..+| .+++.+..+... ...+..+...+++ .|++++. ++.+..++.
T Consensus 218 ~~~~~~~~g~l~v~-t-------~~~gl~~~~-~~g~~~~~~~~~-~~~~~~~~~~~~g-~l~v~t~----~ggl~~~d~ 282 (330)
T 3hxj_A 218 TRPAISEDGTIYVT-S-------LDGHLYAIN-PDGTEKWRFKTG-KRIESSPVIGNTD-TIYFGSY----DGHLYAINP 282 (330)
T ss_dssp SCCEECTTSCEEEE-E-------TTTEEEEEC-TTSCEEEEEECS-SCCCSCCEECTTS-CEEEECT----TCEEEEECT
T ss_pred eceEECCCCeEEEE-c-------CCCeEEEEC-CCCCEeEEeeCC-CCccccceEcCCC-eEEEecC----CCCEEEECC
Confidence 88899988866554 4 567788887 466666666542 2223345555554 5666665 334455542
Q ss_pred cCCCCCcEEEE
Q 048012 474 RLSERGALVCV 484 (616)
Q Consensus 474 ~~s~~g~~l~s 484 (616)
+|+.+..
T Consensus 283 ----~g~~~~~ 289 (330)
T 3hxj_A 283 ----DGTEKWN 289 (330)
T ss_dssp ----TSCEEEE
T ss_pred ----CCcEEEE
Confidence 4555443
No 250
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.50 E-value=8.2e-05 Score=73.28 Aligned_cols=234 Identities=12% Similarity=0.038 Sum_probs=134.5
Q ss_pred ccEEEEEECCCCCEEEEEEcCCcEEEEeCCCCccccccceecCCCCCCceEEEEecCCCCeEEEEeCCC--eEEEEECCC
Q 048012 150 KIVSALAVDHSGSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSDRFLCVTGSA--QAKIYDRDG 227 (616)
Q Consensus 150 ~~V~~v~~sp~g~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~s~d~--~v~vwd~~~ 227 (616)
.....++|+++|+++++-...+.|..||..+.. ..... ....+..++++++|+.+++..... .|..++..+
T Consensus 32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~~---~~~~~----~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~ 104 (306)
T 2p4o_A 32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGNQ---QIHAT----VEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSD 104 (306)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTCCE---EEEEE----CSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTT
T ss_pred CCcceEEECCCCCEEEEeCCCCeEEEECCCCce---EEEEe----CCCCceeEEEcCCCcEEEEeccCCcceEEEEcCCC
Confidence 457789999999977777678999999876531 11111 124588999999998655544332 466667666
Q ss_pred CeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEEEECCCccccceEEeee----ccCCCCccEE
Q 048012 228 LTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKPK----LARPGRVAVT 303 (616)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~----~~~~~~~~v~ 303 (616)
..+..+.. + . .......++..+.+ .++++-..++.|.++|.............. .....-....
T Consensus 105 g~~~~~~~-------~---~-~~~~~~g~~~~~~~-~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pn 172 (306)
T 2p4o_A 105 GTVETLLT-------L---P-DAIFLNGITPLSDT-QYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAAN 172 (306)
T ss_dssp SCEEEEEE-------C---T-TCSCEEEEEESSSS-EEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEE
T ss_pred CeEEEEEe-------C---C-CccccCcccccCCC-cEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCC
Confidence 55433211 1 0 11122334444433 345555568888888876432110000000 0001111344
Q ss_pred EEEECCCCCeEEEE-eCCCcEEEEeCCC-CCCCCCceeeecCCCCCeEEEEEcCCCCeEEEEecCCcEEEEeCCCCCCcc
Q 048012 304 TCAWDCDGKCIAGG-IGDGSIQVWNLKP-GWGSRPDIHVEKGHSDDITALKFSSDGRILLSRSFDGSLKVWDLRKMKEPL 381 (616)
Q Consensus 304 ~~~~sp~g~~l~~g-~~dg~I~iwd~~~-~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~v~lwd~~~~~~~~ 381 (616)
.+ +++++.|+++ ...+.|+.|++.. + .......+.. ......|++.++|+++++....+.|.++|.. +. ..
T Consensus 173 gi--s~dg~~lyv~d~~~~~I~~~~~~~~g--~~~~~~~~~~-~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~-~~ 245 (306)
T 2p4o_A 173 GL--KRFGNFLYVSNTEKMLLLRIPVDSTD--KPGEPEIFVE-QTNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RS-TT 245 (306)
T ss_dssp EE--EEETTEEEEEETTTTEEEEEEBCTTS--CBCCCEEEEE-SCCCSSEEEBTTCCEEEECBTTCCEEEECTT-CC-EE
T ss_pred Cc--CcCCCEEEEEeCCCCEEEEEEeCCCC--CCCccEEEec-cCCCCCeEECCCCCEEEEeCCCCeEEEECCC-CC-EE
Confidence 55 6788766554 4578899999874 2 1111111111 1345678999999988777778899999975 32 21
Q ss_pred eEecCCCCCCcceeEEEC---CCCCEEEEee
Q 048012 382 KVFEDLPNNYAQTNVAFS---PDEQLFLTGT 409 (616)
Q Consensus 382 ~~~~~~~~~~~v~~v~fs---pdg~~l~~gs 409 (616)
...........+++++|. ++++.|++++
T Consensus 246 ~~~~~~~~~~~p~~~a~~g~~~d~~~LyVt~ 276 (306)
T 2p4o_A 246 IIAQAEQGVIGSTAVAFGQTEGDCTAIYVVT 276 (306)
T ss_dssp EEECGGGTCTTEEEEEECCSTTTTTEEEEEE
T ss_pred EEeecccccCCceEEEEecccCCCCEEEEEC
Confidence 111111112348899999 8988887776
No 251
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.48 E-value=0.00012 Score=73.49 Aligned_cols=247 Identities=10% Similarity=-0.020 Sum_probs=147.6
Q ss_pred ccEEEEEECCCCCEEEEEEcCCcEEEEeCCCCccccccceecCCCCCCceEEEEecCCCCeEEEEe-CCCeEEEEECCCC
Q 048012 150 KIVSALAVDHSGSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSDRFLCVT-GSAQAKIYDRDGL 228 (616)
Q Consensus 150 ~~V~~v~~sp~g~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~s-~d~~v~vwd~~~~ 228 (616)
...+|.+..+.+ +|+.+ ....|+..++.+.. ...+.. ....+..++|++....|+.+. ..+.|..+++++.
T Consensus 34 d~~~C~~~~~~~-~ll~~-~~~~I~~i~~~g~~-----~~~~~~-~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~ 105 (349)
T 3v64_C 34 DRRSCKALGPEP-VLLFA-NRIDIRQVLPHRSE-----YTLLLN-NLENAIALDFHHRRELVFWSDVTLDRILRANLNGS 105 (349)
T ss_dssp TSSCEEESSSCC-EEEEE-CBSCEEEECTTSCC-----EEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred CCCcccccccCc-eeEee-cccceEEEeCCCCe-----eEEeec-CCCceEEEEEeccccEEEEEeccCCceEEEecCCC
Confidence 344566666644 44333 34558888876532 111111 223488999998777666554 5688999998876
Q ss_pred eeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEEEECCCccccceEEeeeccCCCCccEEEEEEC
Q 048012 229 TLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWD 308 (616)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 308 (616)
....+. .........+++.+.+++++++-...+.|.+.++.... ...+.. ..-.....++++
T Consensus 106 ~~~~~~------------~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~-~~~l~~-----~~l~~P~~iavd 167 (349)
T 3v64_C 106 NVEEVV------------STGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAH-RKVLLW-----QSLEKPRAIALH 167 (349)
T ss_dssp SCEEEE------------CSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCS-CEEEEC-----TTCSCEEEEEEE
T ss_pred CceEEE------------eCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCc-eEEEEe-----CCCCCcceEEEe
Confidence 533221 11123346788887666677777778889999986432 222211 111256889999
Q ss_pred CCCCeEE-EEeCC-CcEEEEeCCCCCCCCCceeeecCCCCCeEEEEEcCCCCeEEEEe-cCCcEEEEeCCCCCCcceEec
Q 048012 309 CDGKCIA-GGIGD-GSIQVWNLKPGWGSRPDIHVEKGHSDDITALKFSSDGRILLSRS-FDGSLKVWDLRKMKEPLKVFE 385 (616)
Q Consensus 309 p~g~~l~-~g~~d-g~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s-~Dg~v~lwd~~~~~~~~~~~~ 385 (616)
|.+..|+ +-... +.|..+++... .........-.....|+|++++..|+.+. ..+.|..+|+.. ......+.
T Consensus 168 p~~g~ly~td~~~~~~I~r~~~dG~----~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG-~~~~~~~~ 242 (349)
T 3v64_C 168 PMEGTIYWTDWGNTPRIEASSMDGS----GRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDG-SHRKAVIS 242 (349)
T ss_dssp TTTTEEEEEECSSSCEEEEEETTSC----SCEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS-CSCEEEEC
T ss_pred cCcCeEEEeccCCCCEEEEEeCCCC----CcEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCC-CceEEEEe
Confidence 8655554 44444 78999988753 11122222334578999998666655554 567899999874 32222222
Q ss_pred CCCCCCcceeEEECCCCCEEEEeeccccccCCCceEEEEeCCCCceEEEEec
Q 048012 386 DLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREKLELVSRVGI 437 (616)
Q Consensus 386 ~~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~~~~~~~~~~ 437 (616)
. .......+++ ..+.++++-. ..+.|..++..+++.+..+..
T Consensus 243 ~--~~~~P~giav-~~~~ly~td~-------~~~~V~~~~~~~G~~~~~i~~ 284 (349)
T 3v64_C 243 Q--GLPHPFAITV-FEDSLYWTDW-------HTKSINSANKFTGKNQEIIRN 284 (349)
T ss_dssp S--SCSSEEEEEE-ETTEEEEEET-------TTTEEEEEETTTCCSCEEEEC
T ss_pred C--CCCCceEEEE-ECCEEEEecC-------CCCeEEEEEccCCCccEEecc
Confidence 2 1233667888 3444444443 678899999888877777653
No 252
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.47 E-value=1.7e-05 Score=74.04 Aligned_cols=186 Identities=11% Similarity=0.007 Sum_probs=120.1
Q ss_pred cceEEEEEcCCCCCEEEEEeCC--CCEEEEECCCccccceEEeeeccCCCCccEEEEEECCCCCeEEEEeCCCcEEEEeC
Q 048012 251 CGLTCGEWHPKTKETILTSSED--GSLRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWDCDGKCIAGGIGDGSIQVWNL 328 (616)
Q Consensus 251 ~~v~~~~~~p~~~~~l~s~s~D--g~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~g~~dg~I~iwd~ 328 (616)
.....+.|+. + .++.+.+.+ +.|+.+|+.+++....+...... .--.+++. .+++.+..-.++.+.+||.
T Consensus 21 ~ftqGL~~~~-~-~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~-----fgeGi~~~-~~~ly~ltw~~~~v~v~D~ 92 (243)
T 3mbr_X 21 AFTEGLFYLR-G-HLYESTGETGRSSVRKVDLETGRILQRAEVPPPY-----FGAGIVAW-RDRLIQLTWRNHEGFVYDL 92 (243)
T ss_dssp CCEEEEEEET-T-EEEEEECCTTSCEEEEEETTTCCEEEEEECCTTC-----CEEEEEEE-TTEEEEEESSSSEEEEEET
T ss_pred cccccEEEEC-C-EEEEECCCCCCceEEEEECCCCCEEEEEeCCCCc-----ceeEEEEe-CCEEEEEEeeCCEEEEEEC
Confidence 3456788886 3 567777765 48999999998776655332211 11233333 2344455557899999999
Q ss_pred CCCCCCCCceeeecCCCCCeEEEEEcCCCCeEEEEecCCcEEEEeCCCCCCcceEecCCCCC---CcceeEEECCCCCEE
Q 048012 329 KPGWGSRPDIHVEKGHSDDITALKFSSDGRILLSRSFDGSLKVWDLRKMKEPLKVFEDLPNN---YAQTNVAFSPDEQLF 405 (616)
Q Consensus 329 ~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~---~~v~~v~fspdg~~l 405 (616)
.+. ..+..+.... .=..|+ +++..|+.+..+++|.++|..+.+. +..+.-..+. ..+..+.|. +|+..
T Consensus 93 ~tl----~~~~ti~~~~-~Gwglt--~dg~~L~vSdgs~~l~~iDp~t~~~-~~~I~V~~~g~~~~~lNeLe~~-~G~ly 163 (243)
T 3mbr_X 93 ATL----TPRARFRYPG-EGWALT--SDDSHLYMSDGTAVIRKLDPDTLQQ-VGSIKVTAGGRPLDNLNELEWV-NGELL 163 (243)
T ss_dssp TTT----EEEEEEECSS-CCCEEE--ECSSCEEEECSSSEEEEECTTTCCE-EEEEECEETTEECCCEEEEEEE-TTEEE
T ss_pred CcC----cEEEEEeCCC-CceEEe--eCCCEEEEECCCCeEEEEeCCCCeE-EEEEEEccCCcccccceeeEEe-CCEEE
Confidence 875 4555554322 224454 5677777767788999999987653 3333221111 123455555 66655
Q ss_pred EEeeccccccCCCceEEEEeCCCCceEEEEecC------------CCCCeEEEEEcCCCCcEEEEec
Q 048012 406 LTGTSVERESTTGGLLCFYDREKLELVSRVGIS------------PACSVVQCAWHPKLNQIFATAG 460 (616)
Q Consensus 406 ~~gs~~~~~~~~dg~i~iwd~~~~~~~~~~~~~------------~~~~v~~~~~~p~~~~l~~~~~ 460 (616)
+..- ....|.+.|..+++.+..+.+. .....+.++|+|+.+.|++++.
T Consensus 164 anvw-------~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK 223 (243)
T 3mbr_X 164 ANVW-------LTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK 223 (243)
T ss_dssp EEET-------TTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred EEEC-------CCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence 5443 5779999999999999998754 1235688999999888888885
No 253
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=98.47 E-value=0.00083 Score=66.70 Aligned_cols=272 Identities=11% Similarity=0.065 Sum_probs=141.2
Q ss_pred cccEEEEEECCCCCEEEEEEcCCcEEEEeCCCCccccccceecCCCCCCceEEEEecCCCCeEEEEeCCCeEEEEECCCC
Q 048012 149 TKIVSALAVDHSGSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSDRFLCVTGSAQAKIYDRDGL 228 (616)
Q Consensus 149 ~~~V~~v~~sp~g~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~s~d~~v~vwd~~~~ 228 (616)
...+.+|.|.+.+..+++ +..|.|. +....+ ................+.+|.|++ + .+++++..+.|.. ..+++
T Consensus 35 ~~~~~~v~~~~~~~~~~~-G~~g~i~-~s~DgG-~tW~~~~~~~~~~~~~~~~i~~~~-~-~~~~~g~~g~i~~-S~DgG 108 (327)
T 2xbg_A 35 TATILDMSFIDRHHGWLV-GVNATLM-ETRDGG-QTWEPRTLVLDHSDYRFNSVSFQG-N-EGWIVGEPPIMLH-TTDGG 108 (327)
T ss_dssp SSCEEEEEESSSSCEEEE-ETTTEEE-EESSTT-SSCEECCCCCSCCCCEEEEEEEET-T-EEEEEEETTEEEE-ESSTT
T ss_pred CCcEEEEEECCCCcEEEE-cCCCeEE-EeCCCC-CCCeECCCCCCCCCccEEEEEecC-C-eEEEEECCCeEEE-ECCCC
Confidence 457999999887777774 5677653 333322 222221111112244688999976 3 4444555564443 44444
Q ss_pred eeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEEEECCCccccceEEeeeccCCCCccEEEEEEC
Q 048012 229 TLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWD 308 (616)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 308 (616)
..+.. +.....+...+..+.+.+++ .+++ ++.++.|..- ...++.-..+.. .....+..+++.
T Consensus 109 ~tW~~---------~~~~~~~~~~~~~i~~~~~~-~~~~-~~~~g~v~~S-~DgG~tW~~~~~-----~~~~~~~~~~~~ 171 (327)
T 2xbg_A 109 QSWSQ---------IPLDPKLPGSPRLIKALGNG-SAEM-ITNVGAIYRT-KDSGKNWQALVQ-----EAIGVMRNLNRS 171 (327)
T ss_dssp SSCEE---------CCCCTTCSSCEEEEEEEETT-EEEE-EETTCCEEEE-SSTTSSEEEEEC-----SCCCCEEEEEEC
T ss_pred CCceE---------CccccCCCCCeEEEEEECCC-CEEE-EeCCccEEEE-cCCCCCCEEeec-----CCCcceEEEEEc
Confidence 33222 11111122346677776544 3444 4456654321 112222222211 122268889999
Q ss_pred CCCCeEEEEeCCCcEEE-EeCCCCCCCCCceeeecCCCCCeEEEEEcCCCCeEEEEecCCcEEEEeCCCCCCcceEec-C
Q 048012 309 CDGKCIAGGIGDGSIQV-WNLKPGWGSRPDIHVEKGHSDDITALKFSSDGRILLSRSFDGSLKVWDLRKMKEPLKVFE-D 386 (616)
Q Consensus 309 p~g~~l~~g~~dg~I~i-wd~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~v~lwd~~~~~~~~~~~~-~ 386 (616)
+++.+++++. +|.|+. +|-... ....+ .......+..+.+.+++++++ .+.+|.+++++...+.. ...+. .
T Consensus 172 ~~~~~~~~g~-~G~~~~S~d~gG~--tW~~~--~~~~~~~~~~~~~~~~g~~~~-~~~~G~~~~s~~D~G~t-W~~~~~~ 244 (327)
T 2xbg_A 172 PSGEYVAVSS-RGSFYSTWEPGQT--AWEPH--NRTTSRRLHNMGFTPDGRLWM-IVNGGKIAFSDPDNSEN-WGELLSP 244 (327)
T ss_dssp TTSCEEEEET-TSSEEEEECTTCS--SCEEE--ECCSSSCEEEEEECTTSCEEE-EETTTEEEEEETTEEEE-ECCCBCT
T ss_pred CCCcEEEEEC-CCcEEEEeCCCCC--ceeEC--CCCCCCccceeEECCCCCEEE-EeCCceEEEecCCCCCe-eEeccCC
Confidence 9988887765 455443 443111 11222 223456789999999887654 45678887774221111 11111 1
Q ss_pred -CCCCCcceeEEECCCCCEEEEeeccccccCCCceEEEEeCCCCceEEEEecC--CCCCeEEEEEcCCCCcEEEEec
Q 048012 387 -LPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREKLELVSRVGIS--PACSVVQCAWHPKLNQIFATAG 460 (616)
Q Consensus 387 -~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~~~~~~~~~~~--~~~~v~~~~~~p~~~~l~~~~~ 460 (616)
......+..++|.+++.+++++. +|.| ++....++.-..+... ....+.++.|.++ ..+++++.
T Consensus 245 ~~~~~~~~~~v~~~~~~~~~~~g~--------~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~-~~~~~~G~ 311 (327)
T 2xbg_A 245 LRRNSVGFLDLAYRTPNEVWLAGG--------AGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSP-DQGFILGQ 311 (327)
T ss_dssp TSSCCSCEEEEEESSSSCEEEEES--------TTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEET-TEEEEECS
T ss_pred cccCCcceEEEEecCCCEEEEEeC--------CCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEECC-CceEEEcC
Confidence 12223478899999888888774 5656 4555555544444321 1245777888754 34555554
No 254
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.45 E-value=0.00015 Score=68.65 Aligned_cols=208 Identities=11% Similarity=0.084 Sum_probs=133.8
Q ss_pred CCCcccceEEEEEcCCCCCEEEEEeCCCCEEEEECCCccccceEEeeeccCCCCccEEEEEECCCCCeEEEEeCCCcEEE
Q 048012 246 TKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWDCDGKCIAGGIGDGSIQV 325 (616)
Q Consensus 246 ~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~g~~dg~I~i 325 (616)
+.+-...+..++|+|+++.++++...++.|...|.. ++....+.. .+....-.+++.+++.++++.-.++.|.+
T Consensus 22 l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l-----~g~~D~EGIa~~~~g~~~vs~E~~~~l~~ 95 (255)
T 3qqz_A 22 IAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPL-----DFVKDLETIEYIGDNQFVISDERDYAIYV 95 (255)
T ss_dssp CTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEEC-----SSCSSEEEEEECSTTEEEEEETTTTEEEE
T ss_pred CCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEec-----CCCCChHHeEEeCCCEEEEEECCCCcEEE
Confidence 445556799999999876677778888889999987 444333321 12235778889888887777667788999
Q ss_pred EeCCCCCCCCCceeee------cCCCCCeEEEEEcCCCCeEEEEecCCcEEEEeCCC--CCCcceEecC-----CCCCCc
Q 048012 326 WNLKPGWGSRPDIHVE------KGHSDDITALKFSSDGRILLSRSFDGSLKVWDLRK--MKEPLKVFED-----LPNNYA 392 (616)
Q Consensus 326 wd~~~~~~~~~~~~~~------~~h~~~V~~l~~spdg~~l~s~s~Dg~v~lwd~~~--~~~~~~~~~~-----~~~~~~ 392 (616)
+++..... ...+... .........|+|+|.++.|+++.......||.+.. ....+..+.. ......
T Consensus 96 ~~v~~~~~-i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d 174 (255)
T 3qqz_A 96 ISLTPNSE-VKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDD 174 (255)
T ss_dssp EEECTTCC-EEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSC
T ss_pred EEcCCCCe-eeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCC
Confidence 98865421 0011111 12344578999999998888777666656666541 1112233211 112344
Q ss_pred ceeEEECCCCCEEEEeeccccccCCCceEEEEeCCCCceEEEEecCCC--------CCeEEEEEcCCCCcEEEEeccCCC
Q 048012 393 QTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREKLELVSRVGISPA--------CSVVQCAWHPKLNQIFATAGDKSQ 464 (616)
Q Consensus 393 v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~--------~~v~~~~~~p~~~~l~~~~~d~~~ 464 (616)
+..++|+|....|++-+. ....|.++|.. ++.+..+..... ...-.|+|.++++ |+.++.
T Consensus 175 ~S~l~~dp~tg~lliLS~------~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~-lyIvsE---- 242 (255)
T 3qqz_A 175 VSGAEFNQQKNTLLVLSH------ESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGN-IYIVSE---- 242 (255)
T ss_dssp CCEEEEETTTTEEEEEET------TTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECTTCC-EEEEET----
T ss_pred ceeEEEcCCCCeEEEEEC------CCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECCCCC-EEEEcC----
Confidence 789999997666555553 77889999965 667777766432 2568899999986 666665
Q ss_pred CceEEEec
Q 048012 465 GGTHILYD 472 (616)
Q Consensus 465 ~~~~~v~~ 472 (616)
....+++.
T Consensus 243 ~n~~y~f~ 250 (255)
T 3qqz_A 243 PNRFYRFT 250 (255)
T ss_dssp TTEEEEEE
T ss_pred CceEEEEE
Confidence 44444443
No 255
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.45 E-value=0.00064 Score=76.51 Aligned_cols=274 Identities=12% Similarity=0.108 Sum_probs=164.9
Q ss_pred cccEEEEEECCCCCEEEEEEcCCcEEEEeCCCCccccccceecC-----CCCCCceEEEEecCCCCeEEEEeCCCeEEEE
Q 048012 149 TKIVSALAVDHSGSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLE-----PSEGHQVRNLSWSPTSDRFLCVTGSAQAKIY 223 (616)
Q Consensus 149 ~~~V~~v~~sp~g~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~-----~~~~~~v~~l~~sp~g~~l~~~s~d~~v~vw 223 (616)
...|.++..+++|.+. .|..++-|.+|+..+.. ...+.... ......|.++....++..|.+++.++-|.+|
T Consensus 356 ~~~V~~i~~d~~g~lW-iGt~~~Gl~~~~~~~~~--~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~ 432 (795)
T 4a2l_A 356 DNVVSCIVEDKDKNLW-IGTNDGGLNLYNPITQR--FTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSIL 432 (795)
T ss_dssp CSSEEEEEECTTSCEE-EEESSSCEEEECTTTCC--EEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEE
T ss_pred CCeeEEEEECCCCCEE-EEECCCCeEEEcCCCCc--EEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEE
Confidence 4569999999988654 47777779999876532 11111100 1124569999998888757778887889999
Q ss_pred ECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEEEECCCccccceEEeee-ccCCCCccE
Q 048012 224 DRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKPK-LARPGRVAV 302 (616)
Q Consensus 224 d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~-~~~~~~~~v 302 (616)
+..+..+..+... ....+...|.++...+++ . |..|+. +-|.+||..+.+.. .+.... ........|
T Consensus 433 d~~~~~~~~~~~~--------~~~l~~~~v~~i~~d~~g-~-lwigt~-~Gl~~~~~~~~~~~-~~~~~~~~~~~~~~~i 500 (795)
T 4a2l_A 433 HRNSGQVENFNQR--------NSQLVNENVYAILPDGEG-N-LWLGTL-SALVRFNPEQRSFT-TIEKEKDGTPVVSKQI 500 (795)
T ss_dssp ETTTCCEEEECTT--------TSCCSCSCEEEEEECSSS-C-EEEEES-SCEEEEETTTTEEE-ECCBCTTCCBCCCCCE
T ss_pred eCCCCcEEEeecC--------CCCcCCCeeEEEEECCCC-C-EEEEec-CceeEEeCCCCeEE-EccccccccccCCceE
Confidence 9887765443211 001234578898888766 3 444455 45889998764321 111100 001112368
Q ss_pred EEEEECCCCCeEEEEeCCCcEEEEeCCCCCCCCCceeee------cCCCCCeEEEEEcCCCCeEEEEecCCcEEEEeCCC
Q 048012 303 TTCAWDCDGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVE------KGHSDDITALKFSSDGRILLSRSFDGSLKVWDLRK 376 (616)
Q Consensus 303 ~~~~~sp~g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~------~~h~~~V~~l~~spdg~~l~s~s~Dg~v~lwd~~~ 376 (616)
.++...++|++.+.. . +-|.+||..++ .. ... ......|.+|...++|++.++.. . -|..||..+
T Consensus 501 ~~i~~d~~g~lWigt-~-~Gl~~~~~~~~----~~-~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~-~-Gl~~~d~~~ 571 (795)
T 4a2l_A 501 TTLFRDSHKRLWIGG-E-EGLSVFKQEGL----DI-QKASILPVSNVTKLFTNCIYEASNGIIWVGTR-E-GFYCFNEKD 571 (795)
T ss_dssp EEEEECTTCCEEEEE-S-SCEEEEEEETT----EE-EECCCSCSCGGGGSCEEEEEECTTSCEEEEES-S-CEEEEETTT
T ss_pred EEEEECCCCCEEEEe-C-CceEEEeCCCC----eE-EEecCCCCCCCCCCeeEEEEECCCCCEEEEeC-C-CceeECCCC
Confidence 999999988866544 4 55888987654 11 110 12335699999999998666544 3 588898765
Q ss_pred CCCcceEec---CCCCCCcceeEEECCCCCEEEEeeccccccCCCceEEEEeCCCCceEEEEecCCC---CCe--EEEEE
Q 048012 377 MKEPLKVFE---DLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREKLELVSRVGISPA---CSV--VQCAW 448 (616)
Q Consensus 377 ~~~~~~~~~---~~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~---~~v--~~~~~ 448 (616)
.. +..+. +++. ..|.++...++|.+.+++. .| |..||..+.+. ..+..... ..+ .++..
T Consensus 572 ~~--~~~~~~~~gl~~-~~i~~i~~d~~g~lWi~t~--------~G-l~~~~~~~~~~-~~~~~~dGl~~~~f~~~~~~~ 638 (795)
T 4a2l_A 572 KQ--IKRYNTTNGLPN-NVVYGILEDSFGRLWLSTN--------RG-ISCFNPETEKF-RNFTESDGLQSNQFNTASYCR 638 (795)
T ss_dssp TE--EEEECGGGTCSC-SCEEEEEECTTSCEEEEET--------TE-EEEEETTTTEE-EEECGGGTCSCSCEEEEEEEE
T ss_pred Cc--EEEeCCCCCCch-hheEEEEECCCCCEEEEcC--------Cc-eEEEcCCCCcE-EEcCCcCCCccccCccCceeE
Confidence 32 22222 2222 3478899999998777653 34 67888876653 34432211 122 45666
Q ss_pred cCCCCcEEEEec
Q 048012 449 HPKLNQIFATAG 460 (616)
Q Consensus 449 ~p~~~~l~~~~~ 460 (616)
.+++. |+.++.
T Consensus 639 ~~~G~-l~~g~~ 649 (795)
T 4a2l_A 639 TSVGQ-MYFGGI 649 (795)
T ss_dssp CTTSC-EEEEET
T ss_pred CCCCe-EEEecC
Confidence 77765 555554
No 256
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.43 E-value=2e-05 Score=75.18 Aligned_cols=198 Identities=9% Similarity=-0.000 Sum_probs=126.3
Q ss_pred ceEEEEecCCCCeEEEEeC---CCeEEEEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCC
Q 048012 198 QVRNLSWSPTSDRFLCVTG---SAQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGS 274 (616)
Q Consensus 198 ~v~~l~~sp~g~~l~~~s~---d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~ 274 (616)
....+.|++++ .|+.+++ ++.|+++|..++++..... +..+ .....+.+. +..++++.-.++.
T Consensus 22 f~~Gl~~~~dg-~Lyvstg~~~~s~v~~iD~~tg~v~~~i~----------l~~~-~fgeGi~~~--g~~lyv~t~~~~~ 87 (266)
T 2iwa_A 22 FTQGLVYAEND-TLFESTGLYGRSSVRQVALQTGKVENIHK----------MDDS-YFGEGLTLL--NEKLYQVVWLKNI 87 (266)
T ss_dssp CEEEEEECSTT-EEEEEECSTTTCEEEEEETTTCCEEEEEE----------CCTT-CCEEEEEEE--TTEEEEEETTCSE
T ss_pred CcccEEEeCCC-eEEEECCCCCCCEEEEEECCCCCEEEEEe----------cCCC-cceEEEEEe--CCEEEEEEecCCE
Confidence 36889999986 5555543 5899999999877643311 1111 112245554 4456666667899
Q ss_pred EEEEECCCccccceEEeeeccCCCCccEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCCCCCceeeecCC--C---CCeE
Q 048012 275 LRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWDCDGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGH--S---DDIT 349 (616)
Q Consensus 275 v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~h--~---~~V~ 349 (616)
|.++|..+.+....+... . +. . .. ++++|+.|+++..++.|.++|..+. .....+.-. . ..++
T Consensus 88 v~viD~~t~~v~~~i~~g-~--~~--g-~g--lt~Dg~~l~vs~gs~~l~viD~~t~----~v~~~I~Vg~~~~p~~~~n 155 (266)
T 2iwa_A 88 GFIYDRRTLSNIKNFTHQ-M--KD--G-WG--LATDGKILYGSDGTSILYEIDPHTF----KLIKKHNVKYNGHRVIRLN 155 (266)
T ss_dssp EEEEETTTTEEEEEEECC-S--SS--C-CE--EEECSSSEEEECSSSEEEEECTTTC----CEEEEEECEETTEECCCEE
T ss_pred EEEEECCCCcEEEEEECC-C--CC--e-EE--EEECCCEEEEECCCCeEEEEECCCC----cEEEEEEECCCCcccccce
Confidence 999999987766654322 0 11 1 22 3457887777777899999999875 333333211 1 2367
Q ss_pred EEEEcCCCCeEEEEecCCcEEEEeCCCCCCcceEecCC-----------CCCCcceeEEECCCCCEEEEeeccccccCCC
Q 048012 350 ALKFSSDGRILLSRSFDGSLKVWDLRKMKEPLKVFEDL-----------PNNYAQTNVAFSPDEQLFLTGTSVERESTTG 418 (616)
Q Consensus 350 ~l~~spdg~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~-----------~~~~~v~~v~fspdg~~l~~gs~~~~~~~~d 418 (616)
.+.|. +|.+++....++.|.+.|..+++. +..+... ........|+|+|+++.|++++. ..
T Consensus 156 ele~~-dg~lyvn~~~~~~V~vID~~tg~V-~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk------~~ 227 (266)
T 2iwa_A 156 ELEYI-NGEVWANIWQTDCIARISAKDGTL-LGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGK------LW 227 (266)
T ss_dssp EEEEE-TTEEEEEETTSSEEEEEETTTCCE-EEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEET------TC
T ss_pred eEEEE-CCEEEEecCCCCeEEEEECCCCcE-EEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECC------CC
Confidence 88888 776666655688999999997653 4444321 11124578999999887666652 66
Q ss_pred ceEEEEeCCCC
Q 048012 419 GLLCFYDREKL 429 (616)
Q Consensus 419 g~i~iwd~~~~ 429 (616)
+.|.+.++...
T Consensus 228 ~~v~~i~l~~~ 238 (266)
T 2iwa_A 228 PKLFEIKLHLV 238 (266)
T ss_dssp SEEEEEEEEEC
T ss_pred CeEEEEEEecc
Confidence 78888776543
No 257
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.43 E-value=0.00038 Score=78.23 Aligned_cols=275 Identities=12% Similarity=0.106 Sum_probs=163.8
Q ss_pred cccEEEEEECCCCCEEEEEEcCCcEEEEeCCCCcccccccee------cCCCCCCceEEEEecCCCCeEEEEeCCCeEEE
Q 048012 149 TKIVSALAVDHSGSRVLSGSYDYTVRMYDFQGMNSRLQSFRQ------LEPSEGHQVRNLSWSPTSDRFLCVTGSAQAKI 222 (616)
Q Consensus 149 ~~~V~~v~~sp~g~~lasgs~Dg~i~iwd~~~~~~~~~~~~~------~~~~~~~~v~~l~~sp~g~~l~~~s~d~~v~v 222 (616)
...|.+|..+.+|. |-.|..++-|..|+..... ...+.. ........|.++....+|. |.+|+.++-|.+
T Consensus 312 ~~~v~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~-lWigt~~~Gl~~ 387 (781)
T 3v9f_A 312 NASARYIFQDSFNN-IWIGTWGGGINFISNAPPT--FHTWSYSPTQMNESSLSNKVVSSVCDDGQGK-LWIGTDGGGINV 387 (781)
T ss_dssp SSCEEEEEECSSCC-EEEEEBSSCEEEECSSCCS--CEEEC----CCCSSCCSSSCEEEEEECTTSC-EEEEEBSSCEEE
T ss_pred CCeEEEEEEeCCCC-EEEEecCCeEEEeCCCCCc--ceeeccCccccccCCCCCcceEEEEEcCCCC-EEEEeCCCcEEE
Confidence 46799999999886 4557777778888876431 111111 1112334699999988876 455776777888
Q ss_pred EECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEEEECCCccccceEEeeeccCCCCccE
Q 048012 223 YDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPGRVAV 302 (616)
Q Consensus 223 wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v 302 (616)
|+..+.....+. .........|.++...+++ .|..|+.++-|..+|..+++.. .+. ........|
T Consensus 388 ~~~~~~~~~~~~---------~~~~~~~~~v~~i~~d~~g--~lWigt~~~Gl~~~~~~~~~~~-~~~---~~~~~~~~v 452 (781)
T 3v9f_A 388 FENGKRVAIYNK---------ENRELLSNSVLCSLKDSEG--NLWFGTYLGNISYYNTRLKKFQ-IIE---LEKNELLDV 452 (781)
T ss_dssp EETTEEEEECC--------------CCCSBEEEEEECTTS--CEEEEETTEEEEEECSSSCEEE-ECC---STTTCCCCE
T ss_pred EECCCCeEEEcc---------CCCCCCCcceEEEEECCCC--CEEEEeccCCEEEEcCCCCcEE-Eec---cCCCCCCeE
Confidence 987754432210 0001234568888887765 3555777667889988654321 111 101122368
Q ss_pred EEEEECCCCCeEEEEeCCCcEEEEeCCCCCCCCCceeeec---CCCCCeEEEEEcCCCCeEEEEecCCcEEEEeCCCCCC
Q 048012 303 TTCAWDCDGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEK---GHSDDITALKFSSDGRILLSRSFDGSLKVWDLRKMKE 379 (616)
Q Consensus 303 ~~~~~sp~g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~---~h~~~V~~l~~spdg~~l~s~s~Dg~v~lwd~~~~~~ 379 (616)
.++...++|++. .|+. +-|.+||..++. ........ .....|.+|...++|++.+. +.++-|..||..+..
T Consensus 453 ~~i~~d~~g~lw-igt~-~Gl~~~~~~~~~--~~~~~~~~~~~~~~~~i~~i~~d~~g~lWig-t~~~Gl~~~~~~~~~- 526 (781)
T 3v9f_A 453 RVFYEDKNKKIW-IGTH-AGVFVIDLASKK--VIHHYDTSNSQLLENFVRSIAQDSEGRFWIG-TFGGGVGIYTPDMQL- 526 (781)
T ss_dssp EEEEECTTSEEE-EEET-TEEEEEESSSSS--CCEEECTTTSSCSCSCEEEEEECTTCCEEEE-ESSSCEEEECTTCCE-
T ss_pred EEEEECCCCCEE-EEEC-CceEEEeCCCCe--EEecccCcccccccceeEEEEEcCCCCEEEE-EcCCCEEEEeCCCCe-
Confidence 999988887654 4555 558899987641 11111111 11357999999998876654 443447788876432
Q ss_pred cceEecCC--CCCCcceeEEECCCCCEEEEeeccccccCCCceEEEEeCCCCceEEEEecC---CCCCeEEEEEcCCCCc
Q 048012 380 PLKVFEDL--PNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREKLELVSRVGIS---PACSVVQCAWHPKLNQ 454 (616)
Q Consensus 380 ~~~~~~~~--~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~~~~~~~~~~~---~~~~v~~~~~~p~~~~ 454 (616)
+..+... -....|.++...++|.+.++. ..|.|..||..+.+. ..+... ....|.++...++++.
T Consensus 527 -~~~~~~~~~l~~~~i~~i~~d~~g~lWi~T--------~~Glv~~~d~~~~~~-~~~~~~~gl~~~~i~~i~~d~~g~l 596 (781)
T 3v9f_A 527 -VRKFNQYEGFCSNTINQIYRSSKGQMWLAT--------GEGLVCFPSARNFDY-QVFQRKEGLPNTHIRAISEDKNGNI 596 (781)
T ss_dssp -EEEECTTTTCSCSCEEEEEECTTSCEEEEE--------TTEEEEESCTTTCCC-EEECGGGTCSCCCCCEEEECSSSCE
T ss_pred -EEEccCCCCCCCCeeEEEEECCCCCEEEEE--------CCCceEEECCCCCcE-EEccccCCCCCceEEEEEECCCCCE
Confidence 2233211 122458889999988866654 466658899877653 333221 2245778888888765
Q ss_pred EEEE
Q 048012 455 IFAT 458 (616)
Q Consensus 455 l~~~ 458 (616)
.+++
T Consensus 597 W~~t 600 (781)
T 3v9f_A 597 WAST 600 (781)
T ss_dssp EEEC
T ss_pred EEEc
Confidence 4443
No 258
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.42 E-value=0.00045 Score=68.33 Aligned_cols=224 Identities=9% Similarity=-0.043 Sum_probs=132.5
Q ss_pred EeCCCeEEEEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEEEECCCc---cccceEE
Q 048012 214 VTGSAQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEF---KSQKQVI 290 (616)
Q Consensus 214 ~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~---~~~~~~~ 290 (616)
.+....|+..++.+....... ........++|++.++.++++-...+.|..+++... .....+.
T Consensus 6 ~~~~~~I~~i~~~~~~~~~~~-------------~~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~ 72 (316)
T 1ijq_A 6 FTNRHEVRKMTLDRSEYTSLI-------------PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVI 72 (316)
T ss_dssp EECBSSEEEEETTSCCCEEEE-------------CSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEE
T ss_pred EECCCeEEEEECCCcceEehh-------------cCCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEE
Confidence 344467888898876543221 123457889999877667777777789999998751 1112221
Q ss_pred eeeccCCCCccEEEEEECCCC-CeEEEEeCCCcEEEEeCCCCCCCCCceeeecCCCCCeEEEEEcCCCCeEEEEecC--C
Q 048012 291 KPKLARPGRVAVTTCAWDCDG-KCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHSDDITALKFSSDGRILLSRSFD--G 367 (616)
Q Consensus 291 ~~~~~~~~~~~v~~~~~sp~g-~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~D--g 367 (616)
. ..-.....+++++.+ +++++-...+.|.++++... ...............|++.|.+..|+.+... +
T Consensus 73 ~-----~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~----~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~ 143 (316)
T 1ijq_A 73 S-----RDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV----KRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPA 143 (316)
T ss_dssp C-----SSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSS----SEEEEEECTTCCEEEEEEETTTTEEEEEECSSSC
T ss_pred e-----CCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCCC----ceEEEEECCCCCcceEEeCCCCCEEEEEccCCCC
Confidence 1 111135678888644 45555567889999998753 1222222233467899999866655555433 6
Q ss_pred cEEEEeCCCCCCcceEecCCCCCCcceeEEECCCCCEEEEeeccccccCCCceEEEEeCCCCceEEEE-ecC-CCCCeEE
Q 048012 368 SLKVWDLRKMKEPLKVFEDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREKLELVSRV-GIS-PACSVVQ 445 (616)
Q Consensus 368 ~v~lwd~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~~~~~~~~-~~~-~~~~v~~ 445 (616)
.|..+++.. .. ...+.. ........++|++++..|+.+.. ..+.|..+|+.... ...+ ... .......
T Consensus 144 ~I~~~~~dG-~~-~~~~~~-~~~~~P~gla~d~~~~~lY~~D~------~~~~I~~~d~dg~~-~~~~~~~~~~~~~P~g 213 (316)
T 1ijq_A 144 KIKKGGLNG-VD-IYSLVT-ENIQWPNGITLDLLSGRLYWVDS------KLHSISSIDVNGGN-RKTILEDEKRLAHPFS 213 (316)
T ss_dssp EEEEEETTS-CC-EEEEEC-SSCSCEEEEEEETTTTEEEEEET------TTTEEEEEETTSCS-CEEEEECTTTTSSEEE
T ss_pred eEEEEcCCC-CC-eEEEEE-CCCCCceEEEEeccCCEEEEEEC------CCCeEEEEecCCCc-eEEEeecCCccCCcEE
Confidence 788888763 22 222211 12234788999998888877763 56799999987433 3333 211 1234567
Q ss_pred EEEcCCCCcEEEEeccCCCCceEEEeccc
Q 048012 446 CAWHPKLNQIFATAGDKSQGGTHILYDPR 474 (616)
Q Consensus 446 ~~~~p~~~~l~~~~~d~~~~~~~~v~~~~ 474 (616)
+++. ...|+.+... .+.+..++..
T Consensus 214 iav~--~~~ly~~d~~---~~~V~~~~~~ 237 (316)
T 1ijq_A 214 LAVF--EDKVFWTDII---NEAIFSANRL 237 (316)
T ss_dssp EEEE--TTEEEEEETT---TTEEEEEETT
T ss_pred EEEE--CCEEEEEECC---CCeEEEEeCC
Confidence 7774 3566666553 5566666543
No 259
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.38 E-value=0.0011 Score=65.55 Aligned_cols=229 Identities=13% Similarity=0.001 Sum_probs=136.1
Q ss_pred CCcEEEEeCCCCccccccceecCCCCCCceEEEEecCCCCeEEEEe-CCCeEEEEECCCC----eeeeEeeCceeEeecc
Q 048012 170 DYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSDRFLCVT-GSAQAKIYDRDGL----TLGEFVKGDMYIRDLK 244 (616)
Q Consensus 170 Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~s-~d~~v~vwd~~~~----~~~~~~~~~~~~~~~~ 244 (616)
...|+..++.+... ..+.. ....+..++|++.+..|+.+. ..+.|..+++++. ....+
T Consensus 9 ~~~I~~i~~~~~~~-----~~~~~-~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~----------- 71 (316)
T 1ijq_A 9 RHEVRKMTLDRSEY-----TSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTV----------- 71 (316)
T ss_dssp BSSEEEEETTSCCC-----EEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEE-----------
T ss_pred CCeEEEEECCCcce-----Eehhc-CCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEE-----------
Confidence 35688888876421 11111 234578999998776666554 4688999998762 11111
Q ss_pred cCCCcccceEEEEEcCCCCCEEEEEeCCCCEEEEECCCccccceEEeeeccCCCCccEEEEEECCCCCeEEEEeC-C-Cc
Q 048012 245 NTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWDCDGKCIAGGIG-D-GS 322 (616)
Q Consensus 245 ~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~g~~-d-g~ 322 (616)
..........+++.+.+++++++-...+.|.++++... ....+... .-.....++++|.+..|+.... . +.
T Consensus 72 -~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~-~~~~~~~~-----~~~~P~~iavdp~~g~ly~~d~~~~~~ 144 (316)
T 1ijq_A 72 -ISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV-KRKTLFRE-----NGSKPRAIVVDPVHGFMYWTDWGTPAK 144 (316)
T ss_dssp -ECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSS-SEEEEEEC-----TTCCEEEEEEETTTTEEEEEECSSSCE
T ss_pred -EeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCCC-ceEEEEEC-----CCCCcceEEeCCCCCEEEEEccCCCCe
Confidence 11122345678888766567777777889999998643 22222211 1125689999986665555443 3 68
Q ss_pred EEEEeCCCCCCCCCceeee-cCCCCCeEEEEEcCCCCeEEEEe-cCCcEEEEeCCCCCCcceEecCCCCCCcceeEEECC
Q 048012 323 IQVWNLKPGWGSRPDIHVE-KGHSDDITALKFSSDGRILLSRS-FDGSLKVWDLRKMKEPLKVFEDLPNNYAQTNVAFSP 400 (616)
Q Consensus 323 I~iwd~~~~~~~~~~~~~~-~~h~~~V~~l~~spdg~~l~s~s-~Dg~v~lwd~~~~~~~~~~~~~~~~~~~v~~v~fsp 400 (616)
|..+++... ....+ ...-.....|+|++++..|+.+. ..+.|..+|+.. ..................+++.
T Consensus 145 I~~~~~dG~-----~~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg-~~~~~~~~~~~~~~~P~giav~- 217 (316)
T 1ijq_A 145 IKKGGLNGV-----DIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNG-GNRKTILEDEKRLAHPFSLAVF- 217 (316)
T ss_dssp EEEEETTSC-----CEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS-CSCEEEEECTTTTSSEEEEEEE-
T ss_pred EEEEcCCCC-----CeEEEEECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCC-CceEEEeecCCccCCcEEEEEE-
Confidence 888888642 22222 22334678999998776665554 567899999874 3222222221122335677774
Q ss_pred CCCEEEEeeccccccCCCceEEEEeCCCCceEEEEe
Q 048012 401 DEQLFLTGTSVERESTTGGLLCFYDREKLELVSRVG 436 (616)
Q Consensus 401 dg~~l~~gs~~~~~~~~dg~i~iwd~~~~~~~~~~~ 436 (616)
.+.++++-. ..+.|..++..+++.+..+.
T Consensus 218 ~~~ly~~d~-------~~~~V~~~~~~~g~~~~~i~ 246 (316)
T 1ijq_A 218 EDKVFWTDI-------INEAIFSANRLTGSDVNLLA 246 (316)
T ss_dssp TTEEEEEET-------TTTEEEEEETTTCCCCEEEE
T ss_pred CCEEEEEEC-------CCCeEEEEeCCCCcceEEEe
Confidence 344444444 67899999988888776664
No 260
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.37 E-value=4.5e-05 Score=83.85 Aligned_cols=279 Identities=17% Similarity=0.166 Sum_probs=154.7
Q ss_pred CCEEEEEEcCCcEEEEeCCCCccccccceecCCCCCCceEEEEecC--CCCeEEEEeC------CCeEEEEECCCCe-ee
Q 048012 161 GSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSP--TSDRFLCVTG------SAQAKIYDRDGLT-LG 231 (616)
Q Consensus 161 g~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp--~g~~l~~~s~------d~~v~vwd~~~~~-~~ 231 (616)
+.+|+.++.|+.|..+|..++........ ........+. .+| .+..++++.. ++.|..||..+++ ++
T Consensus 117 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~-~~~~~~~~~~---~~P~v~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W 192 (668)
T 1kv9_A 117 GDKVYVGTLDGRLIALDAKTGKAIWSQQT-TDPAKPYSIT---GAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAW 192 (668)
T ss_dssp BTEEEEECTTSEEEEEETTTCCEEEEEEC-SCTTSSCBCC---SCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEE
T ss_pred CCEEEEEcCCCEEEEEECCCCCEeeeecc-CCCCCcceec---CCCEEECCEEEEeCCCCCcCCCCEEEEEECCCCcEEE
Confidence 45788888899999999887654332211 0000001110 011 1345555543 4899999987554 45
Q ss_pred eEeeCc--eeEe--------ecccCC--------CcccceEEEEEcCCCCCEEEEEeCCC-------------------C
Q 048012 232 EFVKGD--MYIR--------DLKNTK--------GHICGLTCGEWHPKTKETILTSSEDG-------------------S 274 (616)
Q Consensus 232 ~~~~~~--~~~~--------~~~~~~--------~h~~~v~~~~~~p~~~~~l~s~s~Dg-------------------~ 274 (616)
.+.... .... ...... ++......+++.+.. .+++.++.++ .
T Consensus 193 ~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~-~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~ 271 (668)
T 1kv9_A 193 RFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPEL-DLLYVGTGNGSPWNREVRSPGGGDNLYLSS 271 (668)
T ss_dssp EEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTT-TEEEEECCCEESSCHHHHSTTCCCCTTTTE
T ss_pred EecccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCC-CEEEEeCCCCCccccCCCCCCCCCceeeee
Confidence 443210 0000 000000 111122346788866 4777777665 3
Q ss_pred EEEEECCCccccceEEeeeccC---CCCccEEEEEECCCCC---eEEEEeCCCcEEEEeCCCCCCCCCceeeecCCC---
Q 048012 275 LRIWDVNEFKSQKQVIKPKLAR---PGRVAVTTCAWDCDGK---CIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHS--- 345 (616)
Q Consensus 275 v~iwd~~~~~~~~~~~~~~~~~---~~~~~v~~~~~sp~g~---~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~h~--- 345 (616)
|..+|..+++....+....... ....++....+..+|+ .|+.++.+|.|+++|..++. .+.......
T Consensus 272 v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~----~l~~~~~~~~~w 347 (668)
T 1kv9_A 272 ILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGK----LISAEKFGKVTW 347 (668)
T ss_dssp EEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCC----EEEEEESSCCCS
T ss_pred EEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCC----Eecccccccccc
Confidence 9999999988766554321100 0011222222233565 68899999999999998873 221110000
Q ss_pred ---------C------------------------CeEEEEEcCCCCeEEEEe----------------------------
Q 048012 346 ---------D------------------------DITALKFSSDGRILLSRS---------------------------- 364 (616)
Q Consensus 346 ---------~------------------------~V~~l~~spdg~~l~s~s---------------------------- 364 (616)
. .-..++++|+..+++...
T Consensus 348 ~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 427 (668)
T 1kv9_A 348 AEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFAD 427 (668)
T ss_dssp EEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGG
T ss_pred ccccccccCCccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccc
Confidence 0 011367788766655421
Q ss_pred --------cCCcEEEEeCCCCCCcceEecCCCCCCcceeEEECCCCCEEEEeeccccccCCCceEEEEeCCCCceEEEEe
Q 048012 365 --------FDGSLKVWDLRKMKEPLKVFEDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREKLELVSRVG 436 (616)
Q Consensus 365 --------~Dg~v~lwd~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~~~~~~~~~ 436 (616)
.+|.|..||+.+++...+.-.. .......+...+.+|++++ .+|.|++||..+++.+..+.
T Consensus 428 ~~~~p~~~~~g~l~A~D~~tG~~~W~~~~~----~~~~~~~~~t~gg~vf~g~-------~dg~l~a~d~~tG~~l~~~~ 496 (668)
T 1kv9_A 428 ATDVPAAVVSGALLAWDPVKQKAAWKVPYP----THWNGGTLSTAGNLVFQGT-------AAGQMHAYSADKGEALWQFE 496 (668)
T ss_dssp CCCCCGGGCEEEEEEEETTTTEEEEEEEES----SSCCCCEEEETTTEEEEEC-------TTSEEEEEETTTCCEEEEEE
T ss_pred cCCCCCCCccceEEEEeCCCCcEEEEccCC----CCCcCceeEeCCCEEEEEC-------CcccchhhhhhcChhheEec
Confidence 2478999999876543332211 1233344555788899888 89999999999999999987
Q ss_pred cCCCCCeEEEEEcCCCCcEEEEe
Q 048012 437 ISPACSVVQCAWHPKLNQIFATA 459 (616)
Q Consensus 437 ~~~~~~v~~~~~~p~~~~l~~~~ 459 (616)
........-+.+..++.+.++.+
T Consensus 497 ~~~~~~~~p~~~~~~G~~yva~~ 519 (668)
T 1kv9_A 497 AQSGIVAAPMTFELAGRQYVAIM 519 (668)
T ss_dssp CSSCCCSCCEEEEETTEEEEEEE
T ss_pred CCCCcccCceEEEECCEEEEEEE
Confidence 65332223344555666444443
No 261
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.32 E-value=0.00014 Score=78.30 Aligned_cols=257 Identities=14% Similarity=0.069 Sum_probs=139.8
Q ss_pred CCEEEEEEcCCcEEEEeCCCCccccccceecCCCCCCceEEEEecC--CCCeEEEEeC------CCeEEEEECCCCe-ee
Q 048012 161 GSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSP--TSDRFLCVTG------SAQAKIYDRDGLT-LG 231 (616)
Q Consensus 161 g~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp--~g~~l~~~s~------d~~v~vwd~~~~~-~~ 231 (616)
+.+|+.++.|+.|..+|..++......... .......+. -+| .+..+++++. ++.|..+|..+++ ++
T Consensus 115 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~-~~~~~~~~~---~~P~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W 190 (571)
T 2ad6_A 115 AGQIVKKQANGHLLALDAKTGKINWEVEVC-DPKVGSTLT---QAPFVAKDTVLMGCSGAELGVRGAVNAFDLKTGELKW 190 (571)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECC-CGGGTCBCC---SCCEEETTEEEEECBCGGGTCCCEEEEEETTTCCEEE
T ss_pred CCEEEEEeCCCEEEEEECCCCCEEEEecCC-CCCccceec---cCCEEECCEEEEEecCCccCCCCEEEEEECCCCcEEE
Confidence 457788888999999998776543221110 000000111 011 1345666655 7899999987544 44
Q ss_pred eEeeCceeEeec-------------------ccC------CCcccceEEEEEcCCCCCEEEEEeCC--------------
Q 048012 232 EFVKGDMYIRDL-------------------KNT------KGHICGLTCGEWHPKTKETILTSSED-------------- 272 (616)
Q Consensus 232 ~~~~~~~~~~~~-------------------~~~------~~h~~~v~~~~~~p~~~~~l~s~s~D-------------- 272 (616)
.+.......... ... .+.......+++.+... +++.+..+
T Consensus 191 ~~~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g-~vy~~~g~~~~~~~~~~~gd~~ 269 (571)
T 2ad6_A 191 RAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLN-LFYYGSGNPAPWNETMRPGDNK 269 (571)
T ss_dssp EEESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTT-EEEEECCCCSCSCGGGSCSCCT
T ss_pred EEccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCC-eEEEECCCCccccCCccCCCce
Confidence 443221100000 000 00000012345566543 55555432
Q ss_pred --CCEEEEECCCccccceEEeeecc----CCCCccEEEEEECCCCC---eEEEEeCCCcEEEEeCCCCCCCCCceeeecC
Q 048012 273 --GSLRIWDVNEFKSQKQVIKPKLA----RPGRVAVTTCAWDCDGK---CIAGGIGDGSIQVWNLKPGWGSRPDIHVEKG 343 (616)
Q Consensus 273 --g~v~iwd~~~~~~~~~~~~~~~~----~~~~~~v~~~~~sp~g~---~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~ 343 (616)
+.|..+|..+++....+...... .....++. +....+|+ .++.++.+|.|+++|..++. .+.....
T Consensus 270 y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l-~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~----~~w~~~~ 344 (571)
T 2ad6_A 270 WTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVL-TDQPVNGKMTPLLSHIDRNGILYTLNRENGN----LIVAEKV 344 (571)
T ss_dssp TTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEEETTEEEEEEEEECTTSEEEEEETTTCC----EEEEEES
T ss_pred eEEEEEEEecCCCcEEEEecCCCCcccccccCCCCEE-EecccCCcEEEEEEEeCCCcEEEEEECCCCC----EEeeecc
Confidence 35999999988766554332100 01111222 22224674 67788899999999998872 2221110
Q ss_pred -C------------CCCe--------------------------EEEEEcCCCCeEEEEe--------------------
Q 048012 344 -H------------SDDI--------------------------TALKFSSDGRILLSRS-------------------- 364 (616)
Q Consensus 344 -h------------~~~V--------------------------~~l~~spdg~~l~s~s-------------------- 364 (616)
. ..+| ..++|+|+..+|+...
T Consensus 345 ~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~ 424 (571)
T 2ad6_A 345 DPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFF 424 (571)
T ss_dssp STTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCC
T ss_pred cCCccccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCcc
Confidence 0 0011 3467888877777654
Q ss_pred -----------------cCCcEEEEeCCCCCCcceEecCCCCCCcceeEEECCCCCEEEEeeccccccCCCceEEEEeCC
Q 048012 365 -----------------FDGSLKVWDLRKMKEPLKVFEDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDRE 427 (616)
Q Consensus 365 -----------------~Dg~v~lwd~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~ 427 (616)
.+|.|..||+.+++...+.-.. ..+....+...+.+|++++ .+|.|+.||..
T Consensus 425 ~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~----~~~~~~~~~t~gg~v~~g~-------~dg~l~a~D~~ 493 (571)
T 2ad6_A 425 VGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEK----FAAWGGTLYTKGGLVWYAT-------LDGYLKALDNK 493 (571)
T ss_dssp CCEEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEES----SCCCSBCEEETTTEEEEEC-------TTSEEEEEETT
T ss_pred ccccceeccCccccCCCCCCeEEEEECCCCCEEEEecCC----CCccceeEEECCCEEEEEc-------CCCeEEEEECC
Confidence 2478999999876543332211 1122223333566777787 89999999999
Q ss_pred CCceEEEEecC
Q 048012 428 KLELVSRVGIS 438 (616)
Q Consensus 428 ~~~~~~~~~~~ 438 (616)
+++++.++...
T Consensus 494 tG~~lw~~~~~ 504 (571)
T 2ad6_A 494 DGKELWNFKMP 504 (571)
T ss_dssp TCCEEEEEECS
T ss_pred CCCEEEEEeCC
Confidence 99999988764
No 262
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.30 E-value=0.0013 Score=67.41 Aligned_cols=243 Identities=12% Similarity=-0.017 Sum_probs=143.4
Q ss_pred CCcEEEEeCCCCccccccceecCCCCCCceEEEEecCCCCeEEEEe-CCCeEEEEECCCCe----eeeEeeCceeEeecc
Q 048012 170 DYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSDRFLCVT-GSAQAKIYDRDGLT----LGEFVKGDMYIRDLK 244 (616)
Q Consensus 170 Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~s-~d~~v~vwd~~~~~----~~~~~~~~~~~~~~~ 244 (616)
...|+..++.+... ..+. .....+..|+|++....|+.+. ..+.|+.+++++.. ....
T Consensus 91 ~~~I~~i~l~~~~~-----~~~~-~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~----------- 153 (400)
T 3p5b_L 91 RHEVRKMTLDRSEY-----TSLI-PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTV----------- 153 (400)
T ss_dssp TTEEEEECTTSCSC-----EEEE-CSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEE-----------
T ss_pred cceeEEEccCCcce-----eEec-cccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEE-----------
Confidence 46788888765321 1111 1234588999998777666554 46788888887632 1111
Q ss_pred cCCCcccceEEEEEcCCCCCEEEEEeCCCCEEEEECCCccccceEEeeeccCCCCccEEEEEECCCCCeEEEEeC--CCc
Q 048012 245 NTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWDCDGKCIAGGIG--DGS 322 (616)
Q Consensus 245 ~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~g~~--dg~ 322 (616)
..........+++.+.+++++++-...+.|.+.++.... ...+... .-.....++++|.+.+|+.... .+.
T Consensus 154 -~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~-~~~l~~~-----~~~~P~~iavdp~~g~ly~td~~~~~~ 226 (400)
T 3p5b_L 154 -ISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVK-RKTLFRE-----NGSKPRAIVVDPVHGFMYWTDWGTPAK 226 (400)
T ss_dssp -ECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTTCS-EEEEEEC-----SSCCEEEEEEETTTTEEEEEECSSSCC
T ss_pred -EeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCCCCc-eEEEEeC-----CCCCcceEEEecccCeEEEEeCCCCCE
Confidence 112234567888887665677777778889999986532 2222211 1114789999997666655542 378
Q ss_pred EEEEeCCCCCCCCCceeeecCCCCCeEEEEEcCCCCeEEEEe-cCCcEEEEeCCCCCCcceEecCCCCCCcceeEEECCC
Q 048012 323 IQVWNLKPGWGSRPDIHVEKGHSDDITALKFSSDGRILLSRS-FDGSLKVWDLRKMKEPLKVFEDLPNNYAQTNVAFSPD 401 (616)
Q Consensus 323 I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s-~Dg~v~lwd~~~~~~~~~~~~~~~~~~~v~~v~fspd 401 (616)
|...++... .........-.....|++++++..|+.+. ..+.|..+|+.. .....+............+++. .
T Consensus 227 I~~~~~dG~----~~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG-~~~~~~~~~~~~l~~P~gl~v~-~ 300 (400)
T 3p5b_L 227 IKKGGLNGV----DIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNG-GNRKTILEDEKRLAHPFSLAVF-E 300 (400)
T ss_dssp EEEEETTSC----SCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS-CCCEEEEECSSTTSSEEEEEEE-T
T ss_pred EEEEeCCCC----ccEEEEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCC-CccEEEEeCCCCCCCCEEEEEe-C
Confidence 999998753 12222233335678999998777666654 467899999874 3323333321122235567763 3
Q ss_pred CCEEEEeeccccccCCCceEEEEeCCCCceEEEEecCCCCCeEEE-EEcC
Q 048012 402 EQLFLTGTSVERESTTGGLLCFYDREKLELVSRVGISPACSVVQC-AWHP 450 (616)
Q Consensus 402 g~~l~~gs~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~-~~~p 450 (616)
+.++++-. ..+.|..+|..+++.+..+... ......+ .+|+
T Consensus 301 ~~lywtd~-------~~~~V~~~~~~~G~~~~~i~~~-~~~p~~i~v~~~ 342 (400)
T 3p5b_L 301 DKVFWTDI-------INEAIFSANRLTGSDVNLLAEN-LLSPEDMVLFHN 342 (400)
T ss_dssp TEEEEEES-------SSCSEEEEESSSCCCCEEEECS-CSCEEEEEEESG
T ss_pred CEEEEecC-------CCCeEEEEEcCCCCceEEEecC-CCCCceEEEEee
Confidence 33444443 6788999998888887777542 2334444 3444
No 263
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.30 E-value=0.00019 Score=74.40 Aligned_cols=155 Identities=11% Similarity=0.074 Sum_probs=95.5
Q ss_pred ceEEEEecC-CCCeEEEEeCCCeEEEEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCC---
Q 048012 198 QVRNLSWSP-TSDRFLCVTGSAQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDG--- 273 (616)
Q Consensus 198 ~v~~l~~sp-~g~~l~~~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg--- 273 (616)
....|+|+| ++..|+++...+.|+.+|+.+..+..+. ........++|++++..++++...++
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~-------------~~~~~P~~ia~d~~G~~lyvad~~~~~~~ 204 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVY-------------SGLSKVRTICWTHEADSMIITNDQNNNDR 204 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEE-------------CCCSCEEEEEECTTSSEEEEEECCSCTTS
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEe-------------cCCCCcceEEEeCCCCEEEEEeCCCCccc
Confidence 367889998 4566666665588999999887654331 13345788999998853555544333
Q ss_pred -CEEEEECCCccccceEEeeeccCCCCccEEEEEECC-CCCeEEEEeCCCcEEEEeCCCCCCCCCceeee-cCCCCCeEE
Q 048012 274 -SLRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWDC-DGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVE-KGHSDDITA 350 (616)
Q Consensus 274 -~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~-~~h~~~V~~ 350 (616)
.+.+++. .+............ ....++++| +|.++++-..++.|+.|+...+ ...... .........
T Consensus 205 ~~v~~~~~-~g~~~~~~~l~~~~-----~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~----~~~~~~~~~~~~~P~g 274 (430)
T 3tc9_A 205 PNNYILTR-ESGFKVITELTKGQ-----NCNGAETHPINGELYFNSWNAGQVFRYDFTTQ----ETTPLFTIQDSGWEFH 274 (430)
T ss_dssp EEEEEEEG-GGTSCSEEEEEECS-----SCCCEEECTTTCCEEEEETTTTEEEEEETTTT----EEEEEEECSSSSCCEE
T ss_pred ceEEEEeC-CCceeeeeeeccCC-----CceEEEEeCCCCEEEEEECCCCEEEEEECCCC----cEEEEEEcCCCCccee
Confidence 2333332 22222111111111 356788999 7777777777889999998754 111111 112245679
Q ss_pred EEEcCCCCeEE-EEecCCcEEEEeCC
Q 048012 351 LKFSSDGRILL-SRSFDGSLKVWDLR 375 (616)
Q Consensus 351 l~~spdg~~l~-s~s~Dg~v~lwd~~ 375 (616)
|+|+|+|++|+ +-...+.|..++..
T Consensus 275 ia~~pdG~~lyv~d~~~~~I~~~~~d 300 (430)
T 3tc9_A 275 IQFHPSGNYAYIVVVNQHYILRSDYD 300 (430)
T ss_dssp EEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred EEEcCCCCEEEEEECCCCEEEEEeCC
Confidence 99999999554 44567889998875
No 264
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.29 E-value=0.00044 Score=70.46 Aligned_cols=245 Identities=10% Similarity=-0.025 Sum_probs=146.6
Q ss_pred EEEEEECCCCCEEEEEEcCCcEEEEeCCCCccccccceecCCCCCCceEEEEecCCCCeEEEEe-CCCeEEEEECCCCee
Q 048012 152 VSALAVDHSGSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSDRFLCVT-GSAQAKIYDRDGLTL 230 (616)
Q Consensus 152 V~~v~~sp~g~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~s-~d~~v~vwd~~~~~~ 230 (616)
-+|.+..+.+ +|+.+ ....|+.+++.+.. +..+.. ....+..++|++.+..|+.+. ..+.|..+++++...
T Consensus 79 ~~C~~~~~~~-~l~~~-~~~~I~~i~~~~~~-----~~~~~~-~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~ 150 (386)
T 3v65_B 79 RSCKALGPEP-VLLFA-NRIDIRQVLPHRSE-----YTLLLN-NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNV 150 (386)
T ss_dssp SCEEECSSCC-EEEEE-CBSCEEEECTTSCC-----CEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCE
T ss_pred CeECCccccc-eeEee-cCccceeeccCCCc-----EEEEec-CCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCc
Confidence 3455655533 44433 34568888876532 111111 233488999998766666554 568899999887654
Q ss_pred eeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEEEECCCccccceEEeeeccCCCCccEEEEEECCC
Q 048012 231 GEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWDCD 310 (616)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~ 310 (616)
..+. .........+++.+.++.++++-...+.|.+.++.... ...+.. ..-.....++++|.
T Consensus 151 ~~~~------------~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~-~~~l~~-----~~l~~P~giavdp~ 212 (386)
T 3v65_B 151 EEVV------------STGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAH-RKVLLW-----QSLEKPRAIALHPM 212 (386)
T ss_dssp EEEE------------CSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCS-CEEEEC-----SSCSCEEEEEEETT
T ss_pred EEEE------------eCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCc-eEEeec-----CCCCCCcEEEEEcC
Confidence 3221 11122345677887666677777777889888886432 222221 11125788999987
Q ss_pred CCeEEEEe-CC-CcEEEEeCCCCCCCCCceeeecCCCCCeEEEEEcCCCCeEEEE-ecCCcEEEEeCCCCCCcceEecCC
Q 048012 311 GKCIAGGI-GD-GSIQVWNLKPGWGSRPDIHVEKGHSDDITALKFSSDGRILLSR-SFDGSLKVWDLRKMKEPLKVFEDL 387 (616)
Q Consensus 311 g~~l~~g~-~d-g~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~-s~Dg~v~lwd~~~~~~~~~~~~~~ 387 (616)
+..|+... .. +.|..+++... .........-.....|+|+|++..|+.+ +..+.|..+|+.. ......+..
T Consensus 213 ~g~ly~td~~~~~~I~r~~~dG~----~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG-~~~~~~~~~- 286 (386)
T 3v65_B 213 EGTIYWTDWGNTPRIEASSMDGS----GRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDG-SHRKAVISQ- 286 (386)
T ss_dssp TTEEEEEECSSSCEEEEEETTSC----SCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTS-CSCEEEECS-
T ss_pred CCeEEEeccCCCCEEEEEeCCCC----CcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCC-CeeEEEEEC-
Confidence 66555544 34 68888888753 1222222333457899999866655554 4567899999874 322223322
Q ss_pred CCCCcceeEEECCCCCEEEEeeccccccCCCceEEEEeCCCCceEEEEec
Q 048012 388 PNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREKLELVSRVGI 437 (616)
Q Consensus 388 ~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~~~~~~~~~~ 437 (616)
.......+++ ..+.++++.. ..+.|..++..+++.+..+..
T Consensus 287 -~~~~P~giav-~~~~ly~td~-------~~~~V~~~~~~~G~~~~~i~~ 327 (386)
T 3v65_B 287 -GLPHPFAITV-FEDSLYWTDW-------HTKSINSANKFTGKNQEIIRN 327 (386)
T ss_dssp -SCSSEEEEEE-ETTEEEEEET-------TTTEEEEEETTTCCSCEEEEC
T ss_pred -CCCCceEEEE-ECCEEEEeeC-------CCCeEEEEECCCCcceEEEcc
Confidence 1233677888 3444444444 678899999888887777754
No 265
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.29 E-value=6.6e-05 Score=82.54 Aligned_cols=290 Identities=14% Similarity=0.061 Sum_probs=160.2
Q ss_pred CCEEEEEEcCCcEEEEeCCCCccccccceecCCC----C-CCce-EEEEecCCCCeEEEEeCCCeEEEEECCCCe-eeeE
Q 048012 161 GSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPS----E-GHQV-RNLSWSPTSDRFLCVTGSAQAKIYDRDGLT-LGEF 233 (616)
Q Consensus 161 g~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~----~-~~~v-~~l~~sp~g~~l~~~s~d~~v~vwd~~~~~-~~~~ 233 (616)
+..|+.++.++.|..+|..++....+.-...... . ...+ ..+.+ .+..+++++.++.|..+|..+++ ++.+
T Consensus 66 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~~~W~~ 143 (668)
T 1kv9_A 66 DGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVAL--WGDKVYVGTLDGRLIALDAKTGKAIWSQ 143 (668)
T ss_dssp TTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--EBTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred CCEEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEE--ECCEEEEEcCCCEEEEEECCCCCEeeee
Confidence 4567777778888888887665432211100000 0 0000 11122 35678888999999999987554 4443
Q ss_pred eeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeC------CCCEEEEECCCccccceEEeeecc-C----------
Q 048012 234 VKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSE------DGSLRIWDVNEFKSQKQVIKPKLA-R---------- 296 (616)
Q Consensus 234 ~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~------Dg~v~iwd~~~~~~~~~~~~~~~~-~---------- 296 (616)
...+.. .........+ .. + ..++.+.. ++.|+.+|..+++....+...... .
T Consensus 144 ~~~~~~----~~~~~~~~P~----v~--~-~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~ 212 (668)
T 1kv9_A 144 QTTDPA----KPYSITGAPR----VV--K-GKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELRE 212 (668)
T ss_dssp ECSCTT----SSCBCCSCCE----EE--T-TEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHH
T ss_pred ccCCCC----CcceecCCCE----EE--C-CEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCcccccccccc
Confidence 221100 0000001111 11 2 24555432 589999999998877665421100 0
Q ss_pred --------------CCCccEEEEEECCCCCeEEEEeCCCc-------------------EEEEeCCCCCCCCCceeeec-
Q 048012 297 --------------PGRVAVTTCAWDCDGKCIAGGIGDGS-------------------IQVWNLKPGWGSRPDIHVEK- 342 (616)
Q Consensus 297 --------------~~~~~v~~~~~sp~g~~l~~g~~dg~-------------------I~iwd~~~~~~~~~~~~~~~- 342 (616)
.+......+++++...+++.++.++. |..+|..++ ..+-.+.
T Consensus 213 ~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG----~~~W~~~~ 288 (668)
T 1kv9_A 213 AAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTG----KLAWHYQV 288 (668)
T ss_dssp HHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTC----CEEEEEES
T ss_pred ccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCC----ceeeEeec
Confidence 00001224678888889999887763 999999987 3333332
Q ss_pred -CCC-------CCeEEEEEcCCCC---eEEEEecCCcEEEEeCCCCCCcceEecCCC-----------------------
Q 048012 343 -GHS-------DDITALKFSSDGR---ILLSRSFDGSLKVWDLRKMKEPLKVFEDLP----------------------- 388 (616)
Q Consensus 343 -~h~-------~~V~~l~~spdg~---~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~----------------------- 388 (616)
.|. .++....+..+|+ +|+.++.+|.|+++|..+++.... .....
T Consensus 289 ~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~-~~~~~~~w~~~~d~~~g~p~~~~~~~~~ 367 (668)
T 1kv9_A 289 TPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISA-EKFGKVTWAEKVDLATGRPVEAPGVRYE 367 (668)
T ss_dssp STTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEE-EESSCCCSEEEECTTTCCEEECTTTTCS
T ss_pred CCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEecc-ccccccccccccccccCCcccccccccc
Confidence 232 2233333334665 688999999999999987653211 10000
Q ss_pred -----------CCCcceeEEECCCCCEEEEeeccc------------------c-----------ccCCCceEEEEeCCC
Q 048012 389 -----------NNYAQTNVAFSPDEQLFLTGTSVE------------------R-----------ESTTGGLLCFYDREK 428 (616)
Q Consensus 389 -----------~~~~v~~v~fspdg~~l~~gs~~~------------------~-----------~~~~dg~i~iwd~~~ 428 (616)
....-..++|+|+..++++..... . ....+|.|..||+.+
T Consensus 368 ~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~t 447 (668)
T 1kv9_A 368 KEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVK 447 (668)
T ss_dssp SSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTT
T ss_pred CCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCC
Confidence 000012378899888777643200 0 011348899999999
Q ss_pred CceEEEEecCCCCCeEEEEEcCCCCcEEEEeccCCCCceEEEeccc
Q 048012 429 LELVSRVGISPACSVVQCAWHPKLNQIFATAGDKSQGGTHILYDPR 474 (616)
Q Consensus 429 ~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~~~~~~~~v~~~~ 474 (616)
++.+-++... ..+....+...+..+++++. ++.+.+|+..
T Consensus 448 G~~~W~~~~~--~~~~~~~~~t~gg~vf~g~~----dg~l~a~d~~ 487 (668)
T 1kv9_A 448 QKAAWKVPYP--THWNGGTLSTAGNLVFQGTA----AGQMHAYSAD 487 (668)
T ss_dssp TEEEEEEEES--SSCCCCEEEETTTEEEEECT----TSEEEEEETT
T ss_pred CcEEEEccCC--CCCcCceeEeCCCEEEEECC----cccchhhhhh
Confidence 9998877643 22333344456778888865 5566666543
No 266
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.29 E-value=0.00049 Score=65.12 Aligned_cols=207 Identities=13% Similarity=0.175 Sum_probs=126.0
Q ss_pred CceEEEEecCCCCeEEE-EeCCCeEEEEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCE
Q 048012 197 HQVRNLSWSPTSDRFLC-VTGSAQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSL 275 (616)
Q Consensus 197 ~~v~~l~~sp~g~~l~~-~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v 275 (616)
..+..++|+|++..|++ ...++.|..+|..+..+..+. +.+ ......+++.+++ .++++.-.++.|
T Consensus 27 ~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~g~v~~~i~-----------l~g-~~D~EGIa~~~~g-~~~vs~E~~~~l 93 (255)
T 3qqz_A 27 NNISSLTWSAQSNTLFSTINKPAAIVEMTTNGDLIRTIP-----------LDF-VKDLETIEYIGDN-QFVISDERDYAI 93 (255)
T ss_dssp SCEEEEEEETTTTEEEEEEETTEEEEEEETTCCEEEEEE-----------CSS-CSSEEEEEECSTT-EEEEEETTTTEE
T ss_pred cCcceeEEeCCCCEEEEEECCCCeEEEEeCCCCEEEEEe-----------cCC-CCChHHeEEeCCC-EEEEEECCCCcE
Confidence 45999999998776665 556788888898854432221 112 2456778888766 355666567889
Q ss_pred EEEECCCccccceEEeee---ccCCCCccEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCCCCCceeee-------cCCC
Q 048012 276 RIWDVNEFKSQKQVIKPK---LARPGRVAVTTCAWDCDGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVE-------KGHS 345 (616)
Q Consensus 276 ~iwd~~~~~~~~~~~~~~---~~~~~~~~v~~~~~sp~g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~-------~~h~ 345 (616)
.++++............. .........-.++|+|.++.|+++.......||.+.... ....+... ..+.
T Consensus 94 ~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~-~~~~l~i~~~~~~~~~~~~ 172 (255)
T 3qqz_A 94 YVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLL-SSNELHISKDKALQRQFTL 172 (255)
T ss_dssp EEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTT-CSSCCEEEECHHHHHTCCS
T ss_pred EEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccc-cCCceeeecchhhcccccc
Confidence 999887644322111111 112334457899999999888877776655555554210 11112221 1234
Q ss_pred CCeEEEEEcCC-CCeEEEEecCCcEEEEeCCCCCCcceEecCCCC-------CCcceeEEECCCCCEEEEeeccccccCC
Q 048012 346 DDITALKFSSD-GRILLSRSFDGSLKVWDLRKMKEPLKVFEDLPN-------NYAQTNVAFSPDEQLFLTGTSVERESTT 417 (616)
Q Consensus 346 ~~V~~l~~spd-g~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~-------~~~v~~v~fspdg~~l~~gs~~~~~~~~ 417 (616)
..+.+|+++|. +++++.......|.++|... . ++..+.-... ....-.|+|.++|++.++ + .
T Consensus 173 ~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~g-~-~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIv-s-------E 242 (255)
T 3qqz_A 173 DDVSGAEFNQQKNTLLVLSHESRALQEVTLVG-E-VIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIV-S-------E 242 (255)
T ss_dssp SCCCEEEEETTTTEEEEEETTTTEEEEECTTC-C-EEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEE-E-------T
T ss_pred CCceeEEEcCCCCeEEEEECCCCeEEEEcCCC-C-EEEEEEcCCccCCcccccCCCCeeEECCCCCEEEE-c-------C
Confidence 56899999995 45555556677888898763 3 3444322211 123578999999986666 4 5
Q ss_pred CceEEEEeCC
Q 048012 418 GGLLCFYDRE 427 (616)
Q Consensus 418 dg~i~iwd~~ 427 (616)
.+.++.|...
T Consensus 243 ~n~~y~f~~~ 252 (255)
T 3qqz_A 243 PNRFYRFTPQ 252 (255)
T ss_dssp TTEEEEEEC-
T ss_pred CceEEEEEec
Confidence 6777777643
No 267
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=98.29 E-value=0.0007 Score=70.04 Aligned_cols=202 Identities=7% Similarity=0.042 Sum_probs=116.2
Q ss_pred ceEEEEecCC--CCeEEEEeCCCeEEEEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCC---
Q 048012 198 QVRNLSWSPT--SDRFLCVTGSAQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSED--- 272 (616)
Q Consensus 198 ~v~~l~~sp~--g~~l~~~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~D--- 272 (616)
....|+|+++ ...|+++...+.|+.++..+..+..+ .........++|++++. ++++....
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~-------------~~~~~~P~giavd~dG~-lyVad~~~~~~ 205 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIK-------------TTNIGQCADVNFTLNGD-MVVVDDQSSDT 205 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEE-------------CCCCSCEEEEEECTTCC-EEEEECCSCTT
T ss_pred CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEe-------------ecCCCCccEEEECCCCC-EEEEcCCCCcc
Confidence 3678999984 45566555548899999877665433 12334578999999885 66655422
Q ss_pred CC-EEEEECCCccccceEEeeeccCCCCccEEEEEECC-CCCeEEEEeCCCcEEEEeCCCCCCCCCc-eeee-cCCCCCe
Q 048012 273 GS-LRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWDC-DGKCIAGGIGDGSIQVWNLKPGWGSRPD-IHVE-KGHSDDI 348 (616)
Q Consensus 273 g~-v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~g~~l~~g~~dg~I~iwd~~~~~~~~~~-~~~~-~~h~~~V 348 (616)
.. +...+.. ............ .....+++++ +|.++++-..++.|+.+|..++ .. .... .+....-
T Consensus 206 ~~gv~~~~~~-~~~~~~~~~~~~-----~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g----~~~~~~~~~~~~~~~ 275 (433)
T 4hw6_A 206 NTGIYLFTRA-SGFTERLSLCNA-----RGAKTCAVHPQNGKIYYTRYHHAMISSYDPATG----TLTEEEVMMDTKGSN 275 (433)
T ss_dssp SEEEEEECGG-GTTCCEEEEEEC-----SSBCCCEECTTTCCEEECBTTCSEEEEECTTTC----CEEEEEEECSCCSSC
T ss_pred cceEEEEECC-CCeecccccccc-----CCCCEEEEeCCCCeEEEEECCCCEEEEEECCCC----eEEEEEeccCCCCCc
Confidence 11 2223221 111111111111 1346688999 6776666667889999998755 22 1111 1112234
Q ss_pred EEEEEcCCCCeEEE-EecCCcEEEEeCCCCCCc---ceEecCC-C------------CCCcceeEEE---------CCCC
Q 048012 349 TALKFSSDGRILLS-RSFDGSLKVWDLRKMKEP---LKVFEDL-P------------NNYAQTNVAF---------SPDE 402 (616)
Q Consensus 349 ~~l~~spdg~~l~s-~s~Dg~v~lwd~~~~~~~---~~~~~~~-~------------~~~~v~~v~f---------spdg 402 (616)
..|+|+|++++|+. -...+.|+.+++...... ...+... . .......++| ..++
T Consensus 276 ~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g 355 (433)
T 4hw6_A 276 FHIVWHPTGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEY 355 (433)
T ss_dssp EEEEECTTSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCE
T ss_pred ccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCC
Confidence 57999999995554 445678999886532111 1111111 0 0123566888 6777
Q ss_pred CEEEEeeccccccCCCceEEEEeCCCCce
Q 048012 403 QLFLTGTSVERESTTGGLLCFYDREKLEL 431 (616)
Q Consensus 403 ~~l~~gs~~~~~~~~dg~i~iwd~~~~~~ 431 (616)
.++++-. ..+.|+.++. ++..
T Consensus 356 ~lyvaD~-------~n~~I~~~~~-~G~v 376 (433)
T 4hw6_A 356 DFYFCDR-------DSHTVRVLTP-EGRV 376 (433)
T ss_dssp EEEEEET-------TTTEEEEECT-TSEE
T ss_pred cEEEEEC-------CCCEEEEECC-CCCE
Confidence 6666655 6778888884 5543
No 268
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=98.28 E-value=0.00024 Score=73.52 Aligned_cols=244 Identities=10% Similarity=0.048 Sum_probs=135.4
Q ss_pred cEEEEEECCC--CCEEEEEEcCCcEEEEeCCCCccccccceecCCCCCCceEEEEecCCCCeEEEEeCCC-----eEEEE
Q 048012 151 IVSALAVDHS--GSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSDRFLCVTGSA-----QAKIY 223 (616)
Q Consensus 151 ~V~~v~~sp~--g~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~s~d~-----~v~vw 223 (616)
....|+|+|+ ...|+.+...+.|+.++..++. +..+.. .......|+|+++|+ |+++...+ .+..+
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~-----v~~~~~-~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~ 212 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQY-----VDIKTT-NIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLF 212 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTE-----EEEECC-CCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEE
T ss_pred CCceEEEccccCCCEEEEEeCCCCEEEEECCCCE-----EEEeec-CCCCccEEEECCCCC-EEEEcCCCCcccceEEEE
Confidence 4568899984 4445555444889999986532 122211 334589999999999 55454321 12222
Q ss_pred ECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEEEECCCccccceEEeeeccCCCCccEE
Q 048012 224 DRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPGRVAVT 303 (616)
Q Consensus 224 d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~ 303 (616)
+..+..... ..+ ........++++|.++.++++-..++.|+.+|..++.....+.... ......
T Consensus 213 ~~~~~~~~~--------~~~----~~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~----~~~~~~ 276 (433)
T 4hw6_A 213 TRASGFTER--------LSL----CNARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMD----TKGSNF 276 (433)
T ss_dssp CGGGTTCCE--------EEE----EECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECS----CCSSCE
T ss_pred ECCCCeecc--------ccc----cccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccC----CCCCcc
Confidence 222111000 000 0123345678888555677676677889999987554322222111 111234
Q ss_pred EEEECCCCCeEEE-EeCCCcEEEEeCCCCCCCCCceeeecC---------------CCCCeEEEEE---------cCCCC
Q 048012 304 TCAWDCDGKCIAG-GIGDGSIQVWNLKPGWGSRPDIHVEKG---------------HSDDITALKF---------SSDGR 358 (616)
Q Consensus 304 ~~~~sp~g~~l~~-g~~dg~I~iwd~~~~~~~~~~~~~~~~---------------h~~~V~~l~~---------spdg~ 358 (616)
.++|+|+|++|+. -...+.|+.+++............+.+ .-.....|++ ..+|+
T Consensus 277 ~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~ 356 (433)
T 4hw6_A 277 HIVWHPTGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYD 356 (433)
T ss_dssp EEEECTTSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEE
T ss_pred cEEEeCCCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCc
Confidence 6999999995554 455688999886531001000111111 1123567999 77888
Q ss_pred eEEEEecCCcEEEEeCCCCCCcceEecCCC----------------CCCcceeEEEC-CCCCEEEEeeccccccCCCceE
Q 048012 359 ILLSRSFDGSLKVWDLRKMKEPLKVFEDLP----------------NNYAQTNVAFS-PDEQLFLTGTSVERESTTGGLL 421 (616)
Q Consensus 359 ~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~----------------~~~~v~~v~fs-pdg~~l~~gs~~~~~~~~dg~i 421 (616)
++++-...+.|+.++.. + . +..+.... .-.....|+++ +++.++++-. ..+.|
T Consensus 357 lyvaD~~n~~I~~~~~~-G-~-v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~-------~n~rI 426 (433)
T 4hw6_A 357 FYFCDRDSHTVRVLTPE-G-R-VTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDC-------DNHRV 426 (433)
T ss_dssp EEEEETTTTEEEEECTT-S-E-EEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEG-------GGTEE
T ss_pred EEEEECCCCEEEEECCC-C-C-EEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeC-------CCCEE
Confidence 87777778889999853 2 2 22222111 01236778998 4555555444 56777
Q ss_pred EEEeCC
Q 048012 422 CFYDRE 427 (616)
Q Consensus 422 ~iwd~~ 427 (616)
+.++++
T Consensus 427 r~i~~e 432 (433)
T 4hw6_A 427 RKIAPE 432 (433)
T ss_dssp EEEEEC
T ss_pred EEEecC
Confidence 777653
No 269
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=98.26 E-value=0.001 Score=65.65 Aligned_cols=225 Identities=9% Similarity=0.013 Sum_probs=133.3
Q ss_pred EeCCCeEEEEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEEEECCCccccceEEeee
Q 048012 214 VTGSAQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKPK 293 (616)
Q Consensus 214 ~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~ 293 (616)
.+....|+.+++++...... ........+..+.|++.++.++++-...+.|..+++........+....
T Consensus 9 ~~~~~~I~~i~l~~~~~~~~-----------~~~~~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~ 77 (318)
T 3sov_A 9 YANRRDLRLVDATNGKENAT-----------IVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSG 77 (318)
T ss_dssp EECEEEEEEEETTCTTSCCE-----------EEEEEEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEEC
T ss_pred EEccCeEEEEECCCCceEEE-----------EEecCCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCC
Confidence 44467888898886531000 0111223567889998766677777778889999987653222222211
Q ss_pred ccCCCCccEEEEEECC-CCCeEEEEeCCCcEEEEeCCCCCCCCCceeeecCCCCCeEEEEEcCCCCeEEEEe--cCCcEE
Q 048012 294 LARPGRVAVTTCAWDC-DGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHSDDITALKFSSDGRILLSRS--FDGSLK 370 (616)
Q Consensus 294 ~~~~~~~~v~~~~~sp-~g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s--~Dg~v~ 370 (616)
.. ....+++.+ .++++++-...+.|.++++... ...............|++.|.+.+|+.+. ..+.|.
T Consensus 78 l~-----~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~----~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~ 148 (318)
T 3sov_A 78 LL-----SPDGLACDWLGEKLYWTDSETNRIEVSNLDGS----LRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIE 148 (318)
T ss_dssp CS-----CCCEEEEETTTTEEEEEETTTTEEEEEETTSC----SCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEE
T ss_pred CC-----CccEEEEEcCCCeEEEEECCCCEEEEEECCCC----cEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEE
Confidence 11 356788886 4555566566789999998753 12222223345678999998665655554 257788
Q ss_pred EEeCCCCCCcceEecCCCCCCcceeEEECCCCCEEEEeeccccccCCCceEEEEeCCCCceEEEEecCCCCCeEEEEEcC
Q 048012 371 VWDLRKMKEPLKVFEDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREKLELVSRVGISPACSVVQCAWHP 450 (616)
Q Consensus 371 lwd~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p 450 (616)
.+++.. ......... .......++|++++..|+.+.. ..+.|..+|+..... ..+..........+++.
T Consensus 149 r~~~dG-~~~~~~~~~--~l~~Pnglavd~~~~~lY~aD~------~~~~I~~~d~dG~~~-~~~~~~~~~~P~glav~- 217 (318)
T 3sov_A 149 RAGMDG-SSRFIIINS--EIYWPNGLTLDYEEQKLYWADA------KLNFIHKSNLDGTNR-QAVVKGSLPHPFALTLF- 217 (318)
T ss_dssp EEETTS-CSCEEEECS--SCSCEEEEEEETTTTEEEEEET------TTTEEEEEETTSCSC-EEEECSCCSCEEEEEEE-
T ss_pred EEEcCC-CCeEEEEEC--CCCCccEEEEeccCCEEEEEEC------CCCEEEEEcCCCCce-EEEecCCCCCceEEEEe-
Confidence 888763 222222221 2234688999998887777763 678899999864333 23321123445666664
Q ss_pred CCCcEEEEeccCCCCceEEEecc
Q 048012 451 KLNQIFATAGDKSQGGTHILYDP 473 (616)
Q Consensus 451 ~~~~l~~~~~d~~~~~~~~v~~~ 473 (616)
...|+.+... .+.+..++.
T Consensus 218 -~~~lywtd~~---~~~V~~~~~ 236 (318)
T 3sov_A 218 -EDILYWTDWS---THSILACNK 236 (318)
T ss_dssp -TTEEEEEETT---TTEEEEEET
T ss_pred -CCEEEEEecC---CCeEEEEEC
Confidence 3355555442 455555554
No 270
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.23 E-value=0.0023 Score=64.04 Aligned_cols=232 Identities=7% Similarity=-0.022 Sum_probs=136.0
Q ss_pred EEEecCCCCeEEEEeCCCeEEEEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEEEEC
Q 048012 201 NLSWSPTSDRFLCVTGSAQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDV 280 (616)
Q Consensus 201 ~l~~sp~g~~l~~~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~ 280 (616)
|....+. .+|+ .+....|+..++++...... ......+..++|++....++++-...+.|+.+++
T Consensus 38 C~~~~~~-~~ll-~~~~~~I~~i~~~g~~~~~~-------------~~~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~ 102 (349)
T 3v64_C 38 CKALGPE-PVLL-FANRIDIRQVLPHRSEYTLL-------------LNNLENAIALDFHHRRELVFWSDVTLDRILRANL 102 (349)
T ss_dssp EEESSSC-CEEE-EECBSCEEEECTTSCCEEEE-------------ECSCSCEEEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred ccccccC-ceeE-eecccceEEEeCCCCeeEEe-------------ecCCCceEEEEEeccccEEEEEeccCCceEEEec
Confidence 4444442 3344 34455688888876554222 1122347899999877666666667788999998
Q ss_pred CCccccceEEeeeccCCCCccEEEEEECCC-CCeEEEEeCCCcEEEEeCCCCCCCCCceeeecCCCCCeEEEEEcCCCCe
Q 048012 281 NEFKSQKQVIKPKLARPGRVAVTTCAWDCD-GKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHSDDITALKFSSDGRI 359 (616)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~-g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~ 359 (616)
..... ..+... .......+++++. ++++++-...+.|.++++... ...............|++.|.+..
T Consensus 103 ~g~~~-~~~~~~-----~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~----~~~~l~~~~l~~P~~iavdp~~g~ 172 (349)
T 3v64_C 103 NGSNV-EEVVST-----GLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGA----HRKVLLWQSLEKPRAIALHPMEGT 172 (349)
T ss_dssp TSCSC-EEEECS-----SCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSC----SCEEEECTTCSCEEEEEEETTTTE
T ss_pred CCCCc-eEEEeC-----CCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCC----ceEEEEeCCCCCcceEEEecCcCe
Confidence 75432 222211 1113467888875 445556566789999998753 122223333355789999996555
Q ss_pred EEEE-ecC-CcEEEEeCCCCCCcceEecCCCCCCcceeEEECCCCCEEEEeeccccccCCCceEEEEeCCCCceEEEEec
Q 048012 360 LLSR-SFD-GSLKVWDLRKMKEPLKVFEDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREKLELVSRVGI 437 (616)
Q Consensus 360 l~s~-s~D-g~v~lwd~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~~~~~~~~~~ 437 (616)
|+.. ... +.|..+++... . ...+.. ........++|+|++..|+.+.. ..+.|..+|+........+.
T Consensus 173 ly~td~~~~~~I~r~~~dG~-~-~~~~~~-~~~~~PnGla~d~~~~~lY~aD~------~~~~I~~~~~dG~~~~~~~~- 242 (349)
T 3v64_C 173 IYWTDWGNTPRIEASSMDGS-G-RRIIAD-THLFWPNGLTIDYAGRRMYWVDA------KHHVIERANLDGSHRKAVIS- 242 (349)
T ss_dssp EEEEECSSSCEEEEEETTSC-S-CEESCC-SSCSCEEEEEEETTTTEEEEEET------TTTEEEEEETTSCSCEEEEC-
T ss_pred EEEeccCCCCEEEEEeCCCC-C-cEEEEE-CCCCCcceEEEeCCCCEEEEEEC------CCCEEEEEeCCCCceEEEEe-
Confidence 5444 444 77888887642 2 222211 12334788999998887777763 56889999987543333232
Q ss_pred CCCCCeEEEEEcCCCCcEEEEeccCCCCceEEEec
Q 048012 438 SPACSVVQCAWHPKLNQIFATAGDKSQGGTHILYD 472 (616)
Q Consensus 438 ~~~~~v~~~~~~p~~~~l~~~~~d~~~~~~~~v~~ 472 (616)
........+++. ...|+.+... .+.+..++
T Consensus 243 ~~~~~P~giav~--~~~ly~td~~---~~~V~~~~ 272 (349)
T 3v64_C 243 QGLPHPFAITVF--EDSLYWTDWH---TKSINSAN 272 (349)
T ss_dssp SSCSSEEEEEEE--TTEEEEEETT---TTEEEEEE
T ss_pred CCCCCceEEEEE--CCEEEEecCC---CCeEEEEE
Confidence 223456677773 3466666543 44444443
No 271
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.23 E-value=0.00082 Score=68.48 Aligned_cols=221 Identities=6% Similarity=-0.047 Sum_probs=132.1
Q ss_pred EeCCCeEEEEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEEEECCCccccceEEeee
Q 048012 214 VTGSAQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKPK 293 (616)
Q Consensus 214 ~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~ 293 (616)
.+....|+.+++.+.....+ ......+..++|++.++.++++-...+.|+.|++..... ..+...
T Consensus 92 ~~~~~~I~~i~~~~~~~~~~-------------~~~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~-~~~~~~- 156 (386)
T 3v65_B 92 FANRIDIRQVLPHRSEYTLL-------------LNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNV-EEVVST- 156 (386)
T ss_dssp EECBSCEEEECTTSCCCEEE-------------ECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCE-EEEECS-
T ss_pred eecCccceeeccCCCcEEEE-------------ecCCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCc-EEEEeC-
Confidence 44456788888876654322 112234788999987766666766778899999875432 222111
Q ss_pred ccCCCCccEEEEEECCCC-CeEEEEeCCCcEEEEeCCCCCCCCCceeeecCCCCCeEEEEEcCCCCeEEEEe-cC-CcEE
Q 048012 294 LARPGRVAVTTCAWDCDG-KCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHSDDITALKFSSDGRILLSRS-FD-GSLK 370 (616)
Q Consensus 294 ~~~~~~~~v~~~~~sp~g-~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s-~D-g~v~ 370 (616)
.......+++++.+ +++++-...+.|.++++... ...............|++.|.+..|+... .. +.|.
T Consensus 157 ----~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~----~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~ 228 (386)
T 3v65_B 157 ----GLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGA----HRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIE 228 (386)
T ss_dssp ----SCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSC----SCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEE
T ss_pred ----CCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCC----ceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEE
Confidence 11134567888754 45555566788999988753 22222333335678999998666555544 34 6788
Q ss_pred EEeCCCCCCcceEecCCCCCCcceeEEECCCCCEEEEeeccccccCCCceEEEEeCCCCceEEEEecCCCCCeEEEEEcC
Q 048012 371 VWDLRKMKEPLKVFEDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREKLELVSRVGISPACSVVQCAWHP 450 (616)
Q Consensus 371 lwd~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p 450 (616)
.+++... ....... ........|+|+|++..|+.+.. ..+.|..+|+........+. ........+++.
T Consensus 229 r~~~dG~-~~~~~~~--~~~~~PnGlavd~~~~~lY~aD~------~~~~I~~~d~dG~~~~~~~~-~~~~~P~giav~- 297 (386)
T 3v65_B 229 ASSMDGS-GRRIIAD--THLFWPNGLTIDYAGRRMYWVDA------KHHVIERANLDGSHRKAVIS-QGLPHPFAITVF- 297 (386)
T ss_dssp EEETTSC-SCEEEEC--SSCSCEEEEEEEGGGTEEEEEET------TTTEEEEECTTSCSCEEEEC-SSCSSEEEEEEE-
T ss_pred EEeCCCC-CcEEEEE--CCCCCeeeEEEeCCCCEEEEEEC------CCCEEEEEeCCCCeeEEEEE-CCCCCceEEEEE-
Confidence 8887642 2222222 12234788999998887777663 67889999986543333332 223456677773
Q ss_pred CCCcEEEEeccCCCCceEEEec
Q 048012 451 KLNQIFATAGDKSQGGTHILYD 472 (616)
Q Consensus 451 ~~~~l~~~~~d~~~~~~~~v~~ 472 (616)
...|+.+... .+.+..++
T Consensus 298 -~~~ly~td~~---~~~V~~~~ 315 (386)
T 3v65_B 298 -EDSLYWTDWH---TKSINSAN 315 (386)
T ss_dssp -TTEEEEEETT---TTEEEEEE
T ss_pred -CCEEEEeeCC---CCeEEEEE
Confidence 3456665543 45555544
No 272
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.23 E-value=0.00012 Score=81.61 Aligned_cols=197 Identities=11% Similarity=0.050 Sum_probs=109.3
Q ss_pred Cccc-ceEEEEEc-CCCCCEEEEEeCCC----CEEEEECCCc-cccceEEeeeccCCCCccEEEEEECCCCCeEEEEeCC
Q 048012 248 GHIC-GLTCGEWH-PKTKETILTSSEDG----SLRIWDVNEF-KSQKQVIKPKLARPGRVAVTTCAWDCDGKCIAGGIGD 320 (616)
Q Consensus 248 ~h~~-~v~~~~~~-p~~~~~l~s~s~Dg----~v~iwd~~~~-~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~g~~d 320 (616)
+|.. .+....|+ |++..++++.+.+| +|+++|+.++ ......+.. ....++|+|+|+.|+....+
T Consensus 170 ~~~~~~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~~--------~~~~~~WspDg~~l~y~~~d 241 (751)
T 2xe4_A 170 GKAFCDVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVSG--------TNGEIVWGPDHTSLFYVTKD 241 (751)
T ss_dssp TCSCCEEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEEE--------ECSCCEECSSTTEEEEEEEC
T ss_pred CCCeEEEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCccccC--------ceeeEEEecCCCEEEEEEEC
Confidence 4443 67888999 99864555555444 4999999886 422111100 12467899999988877665
Q ss_pred -----CcEEEEeCCCCCCCCCceeeec-CCCCCeEEEEEcCCCCeEEEEec---CCcEEEEeCCCCCCcc--eEecCCCC
Q 048012 321 -----GSIQVWNLKPGWGSRPDIHVEK-GHSDDITALKFSSDGRILLSRSF---DGSLKVWDLRKMKEPL--KVFEDLPN 389 (616)
Q Consensus 321 -----g~I~iwd~~~~~~~~~~~~~~~-~h~~~V~~l~~spdg~~l~s~s~---Dg~v~lwd~~~~~~~~--~~~~~~~~ 389 (616)
..|+++++.++. ......+. .......++.|+|||++|+..+. ...|.++|+.+..... ..+... .
T Consensus 242 ~~~~~~~v~~~~lgt~~--~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~-~ 318 (751)
T 2xe4_A 242 ETLRENKVWRHVMGKLQ--SEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPR-E 318 (751)
T ss_dssp TTCCEEEEEEEETTSCG--GGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCC-C
T ss_pred CCCCCCEEEEEECCCCc--hhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecC-C
Confidence 258888887641 11122222 23345678999999998887663 3458888987643222 333221 1
Q ss_pred CCcceeEEECCCCCEEEEeeccccccCCCceEEEEeCCCC-ceEE-EEecCCCCCeEEEEEcCCCCcEEEEec
Q 048012 390 NYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREKL-ELVS-RVGISPACSVVQCAWHPKLNQIFATAG 460 (616)
Q Consensus 390 ~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~~-~~~~-~~~~~~~~~v~~~~~~p~~~~l~~~~~ 460 (616)
.....++.|+. |..|+..+... ......|..+++.+. +... .+.......+..+.|. ++.|+....
T Consensus 319 ~~~~~s~~~~~-g~~l~~~t~~~--~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~--~~~lv~~~~ 386 (751)
T 2xe4_A 319 KGVRYDVQMHG-TSHLVILTNEG--GAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVR--SNYLVVAGR 386 (751)
T ss_dssp TTCCEEEEEET-TTEEEEEECTT--TCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEEC--SSEEEEEEE
T ss_pred CCceEEEeeee-CCEEEEEeCCC--CCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEE--CCEEEEEEE
Confidence 22244455443 55555544210 012347888888753 2222 2321112234455554 456655544
No 273
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.22 E-value=0.0037 Score=70.06 Aligned_cols=284 Identities=12% Similarity=0.065 Sum_probs=164.2
Q ss_pred ccEEEEEECCCCCEEEEEEcCCcEEEEeCCCCccccccceec----CCCCCCceEEEEecCCCCeEEEEeCCCeEEEEEC
Q 048012 150 KIVSALAVDHSGSRVLSGSYDYTVRMYDFQGMNSRLQSFRQL----EPSEGHQVRNLSWSPTSDRFLCVTGSAQAKIYDR 225 (616)
Q Consensus 150 ~~V~~v~~sp~g~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~----~~~~~~~v~~l~~sp~g~~l~~~s~d~~v~vwd~ 225 (616)
..|.+|..+++|.+.+. ... -|.+||..+.. ...+... .......|.++....+|. |.+++..+-|.+++.
T Consensus 211 ~~i~~i~~d~~g~lwig-t~~-Gl~~~d~~~~~--~~~~~~~~~~~~~l~~~~i~~i~~d~~g~-lWigt~~~Gl~~~~~ 285 (781)
T 3v9f_A 211 NDVRCIYKDTNGNIWIG-TSK-GLALFNANTET--FTNFHNNPGNIHGALSSYIFSIKQLKDNK-LWIATELNGIMILDL 285 (781)
T ss_dssp SSEEEEEECTTCCEEEE-ETT-EEEEEETTTTE--EEC-----------CCCCEEEEEECTTSE-EEEEESSSCEEEEET
T ss_pred CceeEEEEcCCCCEEEE-eCC-cHheECCCCCc--EEEEEcCCCccccccCceEEEEEECCCCC-EEEEeCCCCeEEECC
Confidence 56999999988876654 444 58889876432 1111111 012345699999988776 555777567888998
Q ss_pred CCCeeeeEeeCce-eEeec-ccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEEEECCCccccceEEeee----ccCCCC
Q 048012 226 DGLTLGEFVKGDM-YIRDL-KNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKPK----LARPGR 299 (616)
Q Consensus 226 ~~~~~~~~~~~~~-~~~~~-~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~----~~~~~~ 299 (616)
.+..+..+..... .+... ....-....|.++....++ .|..|+.++-|..|+....... .+.... ......
T Consensus 286 ~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g--~lWigt~~~Gl~~~~~~~~~~~-~~~~~~~~~~~~~l~~ 362 (781)
T 3v9f_A 286 QQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFN--NIWIGTWGGGINFISNAPPTFH-TWSYSPTQMNESSLSN 362 (781)
T ss_dssp TCC---------CEEECBCSSTTSBSSSCEEEEEECSSC--CEEEEEBSSCEEEECSSCCSCE-EEC----CCCSSCCSS
T ss_pred CCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCC--CEEEEecCCeEEEeCCCCCcce-eeccCccccccCCCCC
Confidence 7665432211000 00000 0011234568898888865 3666776777999987653321 111100 111122
Q ss_pred ccEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCCCCCceeee----cCCCCCeEEEEEcCCCCeEEEEecCCcEEEEeCC
Q 048012 300 VAVTTCAWDCDGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVE----KGHSDDITALKFSSDGRILLSRSFDGSLKVWDLR 375 (616)
Q Consensus 300 ~~v~~~~~sp~g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~----~~h~~~V~~l~~spdg~~l~s~s~Dg~v~lwd~~ 375 (616)
..|.+++...+|+ |.+|+.++-|.+||..++ ....+ ......|.+|...++|++.+ |+.++-|.+||..
T Consensus 363 ~~v~~i~~d~~g~-lWigt~~~Gl~~~~~~~~-----~~~~~~~~~~~~~~~v~~i~~d~~g~lWi-gt~~~Gl~~~~~~ 435 (781)
T 3v9f_A 363 KVVSSVCDDGQGK-LWIGTDGGGINVFENGKR-----VAIYNKENRELLSNSVLCSLKDSEGNLWF-GTYLGNISYYNTR 435 (781)
T ss_dssp SCEEEEEECTTSC-EEEEEBSSCEEEEETTEE-----EEECC-----CCCSBEEEEEECTTSCEEE-EETTEEEEEECSS
T ss_pred cceEEEEEcCCCC-EEEEeCCCcEEEEECCCC-----eEEEccCCCCCCCcceEEEEECCCCCEEE-EeccCCEEEEcCC
Confidence 3689999988876 456676677999997653 11111 12335699999888886555 6666678899876
Q ss_pred CCCCcceEecC-CCCCCcceeEEECCCCCEEEEeeccccccCCCceEEEEeCCCCceEEEEecC----CCCCeEEEEEcC
Q 048012 376 KMKEPLKVFED-LPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREKLELVSRVGIS----PACSVVQCAWHP 450 (616)
Q Consensus 376 ~~~~~~~~~~~-~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~~~~~~~~~~~----~~~~v~~~~~~p 450 (616)
+.. +..+.. ......|.++...+++.+.+ |+ . +-|.+||..+++........ ....|.++...+
T Consensus 436 ~~~--~~~~~~~~~~~~~v~~i~~d~~g~lwi-gt-------~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~ 504 (781)
T 3v9f_A 436 LKK--FQIIELEKNELLDVRVFYEDKNKKIWI-GT-------H-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDS 504 (781)
T ss_dssp SCE--EEECCSTTTCCCCEEEEEECTTSEEEE-EE-------T-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECT
T ss_pred CCc--EEEeccCCCCCCeEEEEEECCCCCEEE-EE-------C-CceEEEeCCCCeEEecccCcccccccceeEEEEEcC
Confidence 532 222221 11234588888888887555 44 4 45889998877654433221 135688999888
Q ss_pred CCCcEEEEe
Q 048012 451 KLNQIFATA 459 (616)
Q Consensus 451 ~~~~l~~~~ 459 (616)
++...+.+.
T Consensus 505 ~g~lWigt~ 513 (781)
T 3v9f_A 505 EGRFWIGTF 513 (781)
T ss_dssp TCCEEEEES
T ss_pred CCCEEEEEc
Confidence 876555544
No 274
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.21 E-value=0.00044 Score=74.44 Aligned_cols=274 Identities=12% Similarity=0.018 Sum_probs=146.6
Q ss_pred EEEEEEcCCcEEEEeCCCCccccccceecC----CCCCCceEEEEecCCCCeEEEEeC------CCeEEEEECCCCe-ee
Q 048012 163 RVLSGSYDYTVRMYDFQGMNSRLQSFRQLE----PSEGHQVRNLSWSPTSDRFLCVTG------SAQAKIYDRDGLT-LG 231 (616)
Q Consensus 163 ~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~----~~~~~~v~~l~~sp~g~~l~~~s~------d~~v~vwd~~~~~-~~ 231 (616)
+|+.++.|+.|..+|..++....+.-..-. .....++. .+..+++++. ++.|+.+|..+++ ++
T Consensus 123 rV~v~t~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP~v------~~g~V~vg~~g~e~g~~g~v~A~D~~TG~~~W 196 (599)
T 1w6s_A 123 LILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYV------VKDKVIIGSSGAELGVRGYLTAYDVKTGEQVW 196 (599)
T ss_dssp EEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEE------ETTEEEECCBCGGGTCCCEEEEEETTTCCEEE
T ss_pred EEEEEcCCCEEEEEECCCCCEEEeecCCCCCccceeecCCEE------ECCEEEEEecccccCCCCeEEEEECCCCcEEE
Confidence 388888899999999877654322111000 00111111 1245555553 7899999988554 45
Q ss_pred eEeeCceeEee-c---c---------------cCCC----c-ccce-EEEEEcCCCCCEEEEEeCC--------------
Q 048012 232 EFVKGDMYIRD-L---K---------------NTKG----H-ICGL-TCGEWHPKTKETILTSSED-------------- 272 (616)
Q Consensus 232 ~~~~~~~~~~~-~---~---------------~~~~----h-~~~v-~~~~~~p~~~~~l~s~s~D-------------- 272 (616)
.+......... + . ...+ + ...+ ..+++.+.. .+++.+..+
T Consensus 197 ~~~~~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~-g~vy~g~g~~~p~~~~~r~gd~~ 275 (599)
T 1w6s_A 197 RAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGT-NLIYFGTGNPAPWNETMRPGDNK 275 (599)
T ss_dssp EEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTT-TEEEEECCCCSCSCGGGSCSCCT
T ss_pred EEcCCCCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCC-CEEEEeCCCCccccCcccCCCcc
Confidence 54332111000 0 0 0000 0 0001 134455555 466666654
Q ss_pred --CCEEEEECCCccccceEEeeeccC----CCCccEEEEEEC-CCC---CeEEEEeCCCcEEEEeCCCCCCCCCceeeec
Q 048012 273 --GSLRIWDVNEFKSQKQVIKPKLAR----PGRVAVTTCAWD-CDG---KCIAGGIGDGSIQVWNLKPGWGSRPDIHVEK 342 (616)
Q Consensus 273 --g~v~iwd~~~~~~~~~~~~~~~~~----~~~~~v~~~~~s-p~g---~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~ 342 (616)
+.|..+|..+++....+....... ....++. +... .+| ..++.++.+|.|+++|.+++. .+....
T Consensus 276 y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~----~lw~~~ 350 (599)
T 1w6s_A 276 WTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMML-SEQKDKDGKARKLLTHPDRNGIVYTLDRTDGA----LVSANK 350 (599)
T ss_dssp TSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEECTTSCEEEEEEEECTTSEEEEEETTTCC----EEEEEE
T ss_pred ccceEEEEeCCCCceeeEeecCCCccccccCCCccEE-EeccccCCcEEEEEEEECCCcEEEEEECCCCC----Eeeccc
Confidence 379999999887665543321100 0111222 2222 467 467788999999999998873 221111
Q ss_pred C-------------CCCC--------------------------eEEEEEcCCCCeEEEEe-------------------
Q 048012 343 G-------------HSDD--------------------------ITALKFSSDGRILLSRS------------------- 364 (616)
Q Consensus 343 ~-------------h~~~--------------------------V~~l~~spdg~~l~s~s------------------- 364 (616)
. ...+ -..++|+|+..+|++..
T Consensus 351 ~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~ 430 (599)
T 1w6s_A 351 LDDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQF 430 (599)
T ss_dssp SSTTCCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSC
T ss_pred ccCCcccccccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccCCcc
Confidence 0 0000 12466777766665432
Q ss_pred --------------------cCCcEEEEeCCCCCCcceEecCCCCCCcceeEEECCCCCEEEEeeccccccCCCceEEEE
Q 048012 365 --------------------FDGSLKVWDLRKMKEPLKVFEDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFY 424 (616)
Q Consensus 365 --------------------~Dg~v~lwd~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iw 424 (616)
..|.|..||+.+++..-+.-...+ ...-.+.-.+.+|++++ .||.|+.|
T Consensus 431 ~~g~~~~~~~~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~~~~----~~~g~~~tagg~vf~gt-------~dg~l~A~ 499 (599)
T 1w6s_A 431 FVGATLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKMERFA----VWGGTMATAGDLVFYGT-------LDGYLKAR 499 (599)
T ss_dssp CCCEEEEEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEESSC----CCSBCEEETTTEEEEEC-------TTSEEEEE
T ss_pred eecccceeccCCcCCcccCCCcCeEEEEECCCCCEEeEecCCCC----ccCcceEecCCEEEEEC-------CCCeEEEE
Confidence 346788888887654333321211 11112233567777787 89999999
Q ss_pred eCCCCceEEEEecCCCCCeEEEEEcCCCCcEEEEe
Q 048012 425 DREKLELVSRVGISPACSVVQCAWHPKLNQIFATA 459 (616)
Q Consensus 425 d~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~ 459 (616)
|.++++++.++.........-+.|..++.++++..
T Consensus 500 D~~tG~~lW~~~l~~g~~~~P~~y~~~G~qyv~~~ 534 (599)
T 1w6s_A 500 DSDTGDLLWKFKIPSGAIGYPMTYTHKGTQYVAIY 534 (599)
T ss_dssp ETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEE
T ss_pred ECCCCCEEEEeeCCCCcEeccEEEEeCCEEEEEEE
Confidence 99999999998765433333345555665544433
No 275
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.18 E-value=0.0023 Score=65.46 Aligned_cols=226 Identities=9% Similarity=-0.027 Sum_probs=134.6
Q ss_pred EEEEeCCCeEEEEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEEEECCCcc---ccc
Q 048012 211 FLCVTGSAQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFK---SQK 287 (616)
Q Consensus 211 l~~~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~---~~~ 287 (616)
++..+....|+..++++.....+ ......+..++|++.+..++++-...+.|+.+++.... ...
T Consensus 85 ~ll~~~~~~I~~i~l~~~~~~~~-------------~~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~ 151 (400)
T 3p5b_L 85 YLFFTNRHEVRKMTLDRSEYTSL-------------IPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYD 151 (400)
T ss_dssp EEEEEETTEEEEECTTSCSCEEE-------------ECSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCE
T ss_pred eeEEeccceeEEEccCCcceeEe-------------ccccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcce
Confidence 34444567888888886654322 12345678999998776666666677889999986522 111
Q ss_pred eEEeeeccCCCCccEEEEEECC-CCCeEEEEeCCCcEEEEeCCCCCCCCCceeeecCCCCCeEEEEEcCCCCeEEEEec-
Q 048012 288 QVIKPKLARPGRVAVTTCAWDC-DGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHSDDITALKFSSDGRILLSRSF- 365 (616)
Q Consensus 288 ~~~~~~~~~~~~~~v~~~~~sp-~g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~- 365 (616)
.+.. ........+++++ .++++++-...+.|.+.++... ...............|++.|.+.+|+....
T Consensus 152 ~~~~-----~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~----~~~~l~~~~~~~P~~iavdp~~g~ly~td~~ 222 (400)
T 3p5b_L 152 TVIS-----RDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV----KRKTLFRENGSKPRAIVVDPVHGFMYWTDWG 222 (400)
T ss_dssp EEEC-----SSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTTC----SEEEEEECSSCCEEEEEEETTTTEEEEEECS
T ss_pred EEEe-----CCCCCcccEEEEecCCceEEEECCCCeEEEEeCCCC----ceEEEEeCCCCCcceEEEecccCeEEEEeCC
Confidence 1211 1112567888887 4555566666789999998754 222223333445789999996666555542
Q ss_pred -CCcEEEEeCCCCCCcceEecCCCCCCcceeEEECCCCCEEEEeeccccccCCCceEEEEeCCCCceEEEEecC-CCCCe
Q 048012 366 -DGSLKVWDLRKMKEPLKVFEDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREKLELVSRVGIS-PACSV 443 (616)
Q Consensus 366 -Dg~v~lwd~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~v 443 (616)
.+.|...++.. ......+.. .......|+|++++..|+.+.. ..+.|..+|+........+... .....
T Consensus 223 ~~~~I~~~~~dG-~~~~~~~~~--~l~~P~glavd~~~~~lY~aD~------~~~~I~~~d~dG~~~~~~~~~~~~l~~P 293 (400)
T 3p5b_L 223 TPAKIKKGGLNG-VDIYSLVTE--NIQWPNGITLDLLSGRLYWVDS------KLHSISSIDVNGGNRKTILEDEKRLAHP 293 (400)
T ss_dssp SSCCEEEEETTS-CSCEEEECS--SCSCEEEEEEETTTTEEEEEET------TTTEEEEEETTSCCCEEEEECSSTTSSE
T ss_pred CCCEEEEEeCCC-CccEEEEEC--CCCceEEEEEEeCCCEEEEEEC------CCCEEEEEeCCCCccEEEEeCCCCCCCC
Confidence 36788888864 222222221 2234788999998888887763 5788999998654433333211 12335
Q ss_pred EEEEEcCCCCcEEEEeccCCCCceEEEec
Q 048012 444 VQCAWHPKLNQIFATAGDKSQGGTHILYD 472 (616)
Q Consensus 444 ~~~~~~p~~~~l~~~~~d~~~~~~~~v~~ 472 (616)
..++.. +..|+.+... .+.+..++
T Consensus 294 ~gl~v~--~~~lywtd~~---~~~V~~~~ 317 (400)
T 3p5b_L 294 FSLAVF--EDKVFWTDII---NEAIFSAN 317 (400)
T ss_dssp EEEEEE--TTEEEEEESS---SCSEEEEE
T ss_pred EEEEEe--CCEEEEecCC---CCeEEEEE
Confidence 566663 3456655543 44455554
No 276
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.18 E-value=8.7e-05 Score=69.93 Aligned_cols=186 Identities=13% Similarity=0.120 Sum_probs=112.5
Q ss_pred cEEEEEECCCCCEEEEEEcCC--cEEEEeCCCCccccccceecCCCCCCceEEEEecCCCCeEEEEe-CCCeEEEEECCC
Q 048012 151 IVSALAVDHSGSRVLSGSYDY--TVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSDRFLCVT-GSAQAKIYDRDG 227 (616)
Q Consensus 151 ~V~~v~~sp~g~~lasgs~Dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~s-~d~~v~vwd~~~ 227 (616)
-...+.|+ ++.++.+.+.+| .|+++|+.++... .... + ..........++++.|.... .++.+.+||..+
T Consensus 44 ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~-~~~~-l----~~~~FgeGit~~g~~ly~ltw~~~~v~v~D~~t 116 (262)
T 3nol_A 44 FTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTL-QQIE-L----GKRYFGEGISDWKDKIVGLTWKNGLGFVWNIRN 116 (262)
T ss_dssp EEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEE-EEEE-C----CTTCCEEEEEEETTEEEEEESSSSEEEEEETTT
T ss_pred ccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEE-EEEe-c----CCccceeEEEEeCCEEEEEEeeCCEEEEEECcc
Confidence 35788898 677777888776 8999999876422 1111 1 11222222223455666555 478999999987
Q ss_pred CeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEEEECCCccccceEEeeeccCCCCccEEEEEE
Q 048012 228 LTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAW 307 (616)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 307 (616)
.++..... ..+ .-+.++ ++++.++++ ..++.|.++|..+.+....+........ -..++.+.|
T Consensus 117 ~~~~~ti~----------~~~---eG~glt--~dg~~L~~S-dGs~~i~~iDp~T~~v~~~I~V~~~g~~-~~~lNELe~ 179 (262)
T 3nol_A 117 LRQVRSFN----------YDG---EGWGLT--HNDQYLIMS-DGTPVLRFLDPESLTPVRTITVTAHGEE-LPELNELEW 179 (262)
T ss_dssp CCEEEEEE----------CSS---CCCCEE--ECSSCEEEC-CSSSEEEEECTTTCSEEEEEECEETTEE-CCCEEEEEE
T ss_pred CcEEEEEE----------CCC---CceEEe--cCCCEEEEE-CCCCeEEEEcCCCCeEEEEEEeccCCcc-ccccceeEE
Confidence 76533211 111 112333 456545554 4478899999998776665544321110 013556777
Q ss_pred CCCCCeEEEEeCCCcEEEEeCCCCCCCCCceeeecCC------------CCCeEEEEEcCCCCeEEEEec
Q 048012 308 DCDGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGH------------SDDITALKFSSDGRILLSRSF 365 (616)
Q Consensus 308 sp~g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~h------------~~~V~~l~~spdg~~l~s~s~ 365 (616)
. +|++.+....+..|.+.|.+++ ..+..+... ..-.+.|+|+|+++.|+..+.
T Consensus 180 ~-~G~lyan~w~~~~I~vIDp~tG----~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK 244 (262)
T 3nol_A 180 V-DGEIFANVWQTNKIVRIDPETG----KVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK 244 (262)
T ss_dssp E-TTEEEEEETTSSEEEEECTTTC----BEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred E-CCEEEEEEccCCeEEEEECCCC----cEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence 5 6766655557889999999987 343333221 134589999999888877774
No 277
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.17 E-value=0.00098 Score=71.74 Aligned_cols=172 Identities=16% Similarity=0.090 Sum_probs=101.6
Q ss_pred CCEEEEECCCccccceEEeeecc----CCCCccEEEEEEC-CCCC---eEEEEeCCCcEEEEeCCCCCCCCCceeeecCC
Q 048012 273 GSLRIWDVNEFKSQKQVIKPKLA----RPGRVAVTTCAWD-CDGK---CIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGH 344 (616)
Q Consensus 273 g~v~iwd~~~~~~~~~~~~~~~~----~~~~~~v~~~~~s-p~g~---~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~h 344 (616)
+.|..+|..+++....+...... .....++. +... .+|+ .++.++.+|.|+++|..++. .+......
T Consensus 291 ~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l-~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~----~lw~~~~~ 365 (582)
T 1flg_A 291 SGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVL-FDYKAKDGKIVKATAHADRNGFFYVVDRSNGK----LQNAFPFV 365 (582)
T ss_dssp SEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEE-EEEECSSSCEEEEEEEECTTSEEEEEETTTCC----EEEEEESS
T ss_pred ceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEE-EeeecCCCCEEEEEEEECCCceEEEEECCCCC----Eecccccc
Confidence 57999999998776655332110 00111222 2222 4674 78889999999999998872 22111110
Q ss_pred C---------------------------------------------CCeEEEEEcCCCCeEEEEe---------------
Q 048012 345 S---------------------------------------------DDITALKFSSDGRILLSRS--------------- 364 (616)
Q Consensus 345 ~---------------------------------------------~~V~~l~~spdg~~l~s~s--------------- 364 (616)
. ..-..++++|+..+|++..
T Consensus 366 ~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~ 445 (582)
T 1flg_A 366 DNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYT 445 (582)
T ss_dssp SCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCC
T ss_pred cCccccccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcceeeeccccccc
Confidence 0 0012456777665555533
Q ss_pred ------------------cCCcEEEEeCCCCCCcceEecCCCCCCcceeEEECCCCCEEEEeeccccccCCCceEEEEeC
Q 048012 365 ------------------FDGSLKVWDLRKMKEPLKVFEDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDR 426 (616)
Q Consensus 365 ------------------~Dg~v~lwd~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~ 426 (616)
.+|.|..||+.+++..-+.-.... +..-.+...+.+|++++ .||.|+.||.
T Consensus 446 ~g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~~~----~~~g~~~tagglvf~g~-------~dg~l~A~D~ 514 (582)
T 1flg_A 446 KGSAYLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEHLP----LWAGVLATAGNLVFTGT-------GDGYFKAFDA 514 (582)
T ss_dssp TTSCCCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEESSC----CCSCCEEETTTEEEEEC-------TTSEEEEEET
T ss_pred CCCceeccceeecCCCCCCcceEEEEECCCCCEEEEecCCCC----CcccceEeCCCEEEEEC-------CCCcEEEEEC
Confidence 257899999988764333322211 21112222467788888 8999999999
Q ss_pred CCCceEEEEecCCCCCeEEEEEcCCCCcEEEEec
Q 048012 427 EKLELVSRVGISPACSVVQCAWHPKLNQIFATAG 460 (616)
Q Consensus 427 ~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~ 460 (616)
++++.+.++.........-+.|..++.+.++...
T Consensus 515 ~tG~~lW~~~~~~g~~a~P~~y~~~G~qYv~~~~ 548 (582)
T 1flg_A 515 KSGKELWKFQTGSGIVSPPITWEQDGEQYLGVTV 548 (582)
T ss_dssp TTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEE
T ss_pred CCCCEEEEecCCCCcccCceEEEECCEEEEEEEc
Confidence 9999999987644322233666667765555443
No 278
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=98.14 E-value=0.0015 Score=67.82 Aligned_cols=163 Identities=12% Similarity=0.080 Sum_probs=95.6
Q ss_pred ceEEEEecC-CCCeEEEEeC-CCeEEEEECCCCeeeeEeeCceeEeecccCCCcccceEEEEE-------cCCCCCEEEE
Q 048012 198 QVRNLSWSP-TSDRFLCVTG-SAQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEW-------HPKTKETILT 268 (616)
Q Consensus 198 ~v~~l~~sp-~g~~l~~~s~-d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~-------~p~~~~~l~s 268 (616)
....|+|+| +...|+++.. .+.|++.|+.+..+..+... -.........++| ++++..++++
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~---------~~~~~~~p~~ia~~~~~~~~d~~G~~lyva 210 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNI---------NTIPTNRIRSIAFNKKIEGYADEAEYMIVA 210 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECC---------TTSSCSBEEEEEECCCBTTTBCTTCEEEEE
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEcc---------CccccCCCcEEEEeecccccCCCCCEEEEE
Confidence 367899998 3555555544 47899999998877554211 1123446889999 9988534544
Q ss_pred EeCCCC------EEEEECCC-ccccc----eEEeeeccCCCCccEEEEEECC-CCCeEEEEeCCCcEEEEeCC-------
Q 048012 269 SSEDGS------LRIWDVNE-FKSQK----QVIKPKLARPGRVAVTTCAWDC-DGKCIAGGIGDGSIQVWNLK------- 329 (616)
Q Consensus 269 ~s~Dg~------v~iwd~~~-~~~~~----~~~~~~~~~~~~~~v~~~~~sp-~g~~l~~g~~dg~I~iwd~~------- 329 (616)
...++. |.+++... +.... .... ... ....++++| ++.++++-..++.|+.+|+.
T Consensus 211 d~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~-~~~-----~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~ 284 (496)
T 3kya_A 211 IDYDGKGDESPSVYIIKRNADGTFDDRSDIQLIA-AYK-----QCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIK 284 (496)
T ss_dssp ECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEE-EES-----CCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHH
T ss_pred eCCCCCcccCceEEEEecCCCCceeecccceeec-cCC-----CceEEEEcCCCCeEEEEECCCCEEEEEeccccccccc
Confidence 444322 66665333 12110 1111 111 345678899 45566666778889999987
Q ss_pred CCCCCCC---c----eee--ecCCCCCeEEEEEcCCCCeEEEE-ecCCcEEEEeCC
Q 048012 330 PGWGSRP---D----IHV--EKGHSDDITALKFSSDGRILLSR-SFDGSLKVWDLR 375 (616)
Q Consensus 330 ~~~~~~~---~----~~~--~~~h~~~V~~l~~spdg~~l~s~-s~Dg~v~lwd~~ 375 (616)
++....+ . ... ..+.....+.|+|+|+|++|+.+ .....|+.++..
T Consensus 285 tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~d 340 (496)
T 3kya_A 285 NGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYD 340 (496)
T ss_dssp TTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred CceeecccccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecC
Confidence 4421000 0 111 11223456899999999954444 566788887654
No 279
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.08 E-value=0.0022 Score=68.89 Aligned_cols=155 Identities=15% Similarity=0.073 Sum_probs=86.5
Q ss_pred CCeEEEEeCCCeEEEEECCCCe-eeeEeeCceeEeecccCCCcccceEE-EEEcCCCCCEEEEEeC------CCCEEEEE
Q 048012 208 SDRFLCVTGSAQAKIYDRDGLT-LGEFVKGDMYIRDLKNTKGHICGLTC-GEWHPKTKETILTSSE------DGSLRIWD 279 (616)
Q Consensus 208 g~~l~~~s~d~~v~vwd~~~~~-~~~~~~~~~~~~~~~~~~~h~~~v~~-~~~~p~~~~~l~s~s~------Dg~v~iwd 279 (616)
+..+++++.++.|..+|..+++ ++.+..... ..++ .+.+ .... + ..++.++. ++.|+.+|
T Consensus 115 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~-------~~~~--~~~~~P~v~--~-g~v~vg~~~~~~~~~g~v~a~D 182 (571)
T 2ad6_A 115 AGQIVKKQANGHLLALDAKTGKINWEVEVCDP-------KVGS--TLTQAPFVA--K-DTVLMGCSGAELGVRGAVNAFD 182 (571)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCCG-------GGTC--BCCSCCEEE--T-TEEEEECBCGGGTCCCEEEEEE
T ss_pred CCEEEEEeCCCEEEEEECCCCCEEEEecCCCC-------Cccc--eeccCCEEE--C-CEEEEEecCCccCCCCEEEEEE
Confidence 5678888899999999986554 443321110 0000 1110 0111 2 25555554 78999999
Q ss_pred CCCccccceEEeeecc--------------------------------CCCCccEEEEEECCCCCeEEEEeCC-------
Q 048012 280 VNEFKSQKQVIKPKLA--------------------------------RPGRVAVTTCAWDCDGKCIAGGIGD------- 320 (616)
Q Consensus 280 ~~~~~~~~~~~~~~~~--------------------------------~~~~~~v~~~~~sp~g~~l~~g~~d------- 320 (616)
..+++....+...... ..+......+++.+...+++.++.+
T Consensus 183 ~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~ 262 (571)
T 2ad6_A 183 LKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNET 262 (571)
T ss_dssp TTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGG
T ss_pred CCCCcEEEEEccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCC
Confidence 9988776655322100 0000001234566766677776642
Q ss_pred ---------CcEEEEeCCCCCCCCCceeeec--CCC--------CCeEEEEEcCCCC---eEEEEecCCcEEEEeCCCCC
Q 048012 321 ---------GSIQVWNLKPGWGSRPDIHVEK--GHS--------DDITALKFSSDGR---ILLSRSFDGSLKVWDLRKMK 378 (616)
Q Consensus 321 ---------g~I~iwd~~~~~~~~~~~~~~~--~h~--------~~V~~l~~spdg~---~l~s~s~Dg~v~lwd~~~~~ 378 (616)
+.|..+|.+++ ..+-.+. .|. .++. +....+|+ +|+.++.+|.|.++|..+++
T Consensus 263 ~~~gd~~y~~~v~Ald~~tG----~~~W~~~~~~~d~~d~~~~~~p~l-~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~ 337 (571)
T 2ad6_A 263 MRPGDNKWTMTIWGRDLDTG----MAKWGYQKTPHDEWDFAGVNQMVL-TDQPVNGKMTPLLSHIDRNGILYTLNRENGN 337 (571)
T ss_dssp GSCSCCTTTTEEEEEETTTC----CEEEEEESSTTCSSCCCCCCCCEE-EEEEETTEEEEEEEEECTTSEEEEEETTTCC
T ss_pred ccCCCceeEEEEEEEecCCC----cEEEEecCCCCcccccccCCCCEE-EecccCCcEEEEEEEeCCCcEEEEEECCCCC
Confidence 35999999887 2332222 221 2221 22234674 67788889999999998765
Q ss_pred C
Q 048012 379 E 379 (616)
Q Consensus 379 ~ 379 (616)
.
T Consensus 338 ~ 338 (571)
T 2ad6_A 338 L 338 (571)
T ss_dssp E
T ss_pred E
Confidence 3
No 280
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.07 E-value=0.0011 Score=71.49 Aligned_cols=202 Identities=15% Similarity=0.097 Sum_probs=106.3
Q ss_pred CCEEEEEEc-CCcEEEEeC-CCCccccccceecCC------CCCCceEEEEecCCCCe----EEEEeCCCeEEEEECCCC
Q 048012 161 GSRVLSGSY-DYTVRMYDF-QGMNSRLQSFRQLEP------SEGHQVRNLSWSPTSDR----FLCVTGSAQAKIYDRDGL 228 (616)
Q Consensus 161 g~~lasgs~-Dg~i~iwd~-~~~~~~~~~~~~~~~------~~~~~v~~l~~sp~g~~----l~~~s~d~~v~vwd~~~~ 228 (616)
+..|+.++. ++.|.-+|. .++....+.-..... ........++++|.+.. |++++.++.|..+|..++
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG 141 (599)
T 1w6s_A 62 DGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETG 141 (599)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTC
T ss_pred CCEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECCCC
Confidence 345555555 667777776 554432221110000 00000122444444444 888999999999998655
Q ss_pred e-eeeEeeCceeEeecccCCCcccceEE-EEEcCCCCCEEEEEe------CCCCEEEEECCCccccceEEeeeccC----
Q 048012 229 T-LGEFVKGDMYIRDLKNTKGHICGLTC-GEWHPKTKETILTSS------EDGSLRIWDVNEFKSQKQVIKPKLAR---- 296 (616)
Q Consensus 229 ~-~~~~~~~~~~~~~~~~~~~h~~~v~~-~~~~p~~~~~l~s~s------~Dg~v~iwd~~~~~~~~~~~~~~~~~---- 296 (616)
+ ++....... . .+. .+.+ .... + ..++.++ .++.|+.+|..+++....+.......
T Consensus 142 ~~~W~~~~~~~-----~--~~~--~~~ssP~v~--~-g~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~ 209 (599)
T 1w6s_A 142 ETVWKVENSDI-----K--VGS--TLTIAPYVV--K-DKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLL 209 (599)
T ss_dssp CEEEEEECCCG-----G--GTC--BCCSCCEEE--T-TEEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTB
T ss_pred CEEEeecCCCC-----C--ccc--eeecCCEEE--C-CEEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCcccccc
Confidence 4 333321110 0 000 1110 0111 2 2455554 37999999999988766554321100
Q ss_pred ----------------------------CCCccEEEEEECCCCCeEEEEeCC----------------CcEEEEeCCCCC
Q 048012 297 ----------------------------PGRVAVTTCAWDCDGKCIAGGIGD----------------GSIQVWNLKPGW 332 (616)
Q Consensus 297 ----------------------------~~~~~v~~~~~sp~g~~l~~g~~d----------------g~I~iwd~~~~~ 332 (616)
++...-..+++.+...+++.++.+ +.|..+|.+++
T Consensus 210 ~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG- 288 (599)
T 1w6s_A 210 ASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTG- 288 (599)
T ss_dssp CTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTC-
T ss_pred ccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCC-
Confidence 000001134566777788887765 37999999987
Q ss_pred CCCCceeee--cCCC--------CCeEEEEEc-CCC---CeEEEEecCCcEEEEeCCCCCC
Q 048012 333 GSRPDIHVE--KGHS--------DDITALKFS-SDG---RILLSRSFDGSLKVWDLRKMKE 379 (616)
Q Consensus 333 ~~~~~~~~~--~~h~--------~~V~~l~~s-pdg---~~l~s~s~Dg~v~lwd~~~~~~ 379 (616)
..+-.+ ..|. .++. +... .+| ..|+.++.+|.|.++|.++++.
T Consensus 289 ---~~~W~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~ 345 (599)
T 1w6s_A 289 ---EAKFGYQKTPHDEWDYAGVNVMML-SEQKDKDGKARKLLTHPDRNGIVYTLDRTDGAL 345 (599)
T ss_dssp ---CEEEEEESSTTCSSCCCCCCCCEE-EEEECTTSCEEEEEEEECTTSEEEEEETTTCCE
T ss_pred ---ceeeEeecCCCccccccCCCccEE-EeccccCCcEEEEEEEECCCcEEEEEECCCCCE
Confidence 233222 2232 1121 2222 467 5677888999999999987654
No 281
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=98.06 E-value=0.0023 Score=63.19 Aligned_cols=232 Identities=8% Similarity=-0.059 Sum_probs=137.0
Q ss_pred CCcEEEEeCCCCccccccceecCCCCCCceEEEEecCCCCeEEEE-eCCCeEEEEECCCCeeeeEeeCceeEeecccCCC
Q 048012 170 DYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSDRFLCV-TGSAQAKIYDRDGLTLGEFVKGDMYIRDLKNTKG 248 (616)
Q Consensus 170 Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~-s~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 248 (616)
...|+..++.+......... .....+..+.|++....|+.+ ...+.|..++.++....... ...
T Consensus 12 ~~~I~~i~l~~~~~~~~~~~----~~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~-----------~~~ 76 (318)
T 3sov_A 12 RRDLRLVDATNGKENATIVV----GGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNV-----------VVS 76 (318)
T ss_dssp EEEEEEEETTCTTSCCEEEE----EEEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEE-----------EEE
T ss_pred cCeEEEEECCCCceEEEEEe----cCCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEE-----------EcC
Confidence 45788888876421111110 011236789999876665554 45678888888765321100 011
Q ss_pred cccceEEEEEcCCCCCEEEEEeCCCCEEEEECCCccccceEEeeeccCCCCccEEEEEECCCCCeEEEEe--CCCcEEEE
Q 048012 249 HICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWDCDGKCIAGGI--GDGSIQVW 326 (616)
Q Consensus 249 h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~g~--~dg~I~iw 326 (616)
.......+++.+.++.++++-...+.|.++++... ....+.. ........++++|.+..|+... ..+.|..+
T Consensus 77 ~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~-~~~~l~~-----~~~~~P~giavdp~~g~ly~td~~~~~~I~r~ 150 (318)
T 3sov_A 77 GLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGS-LRKVLFW-----QELDQPRAIALDPSSGFMYWTDWGEVPKIERA 150 (318)
T ss_dssp CCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSC-SCEEEEC-----SSCSSEEEEEEEGGGTEEEEEECSSSCEEEEE
T ss_pred CCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCC-cEEEEEe-----CCCCCccEEEEeCCCCEEEEEecCCCCEEEEE
Confidence 12345678888766667777777788999998643 2222221 1112568899998766666555 25788888
Q ss_pred eCCCCCCCCCceeeecCCCCCeEEEEEcCCCCeEEEEe-cCCcEEEEeCCCCCCcceEecCCCCCCcceeEEECCCCCEE
Q 048012 327 NLKPGWGSRPDIHVEKGHSDDITALKFSSDGRILLSRS-FDGSLKVWDLRKMKEPLKVFEDLPNNYAQTNVAFSPDEQLF 405 (616)
Q Consensus 327 d~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s-~Dg~v~lwd~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l 405 (616)
++... .........-..-..|+|++++..|+.+. ..+.|..+|+.. ......... .......+++.. +.++
T Consensus 151 ~~dG~----~~~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG-~~~~~~~~~--~~~~P~glav~~-~~ly 222 (318)
T 3sov_A 151 GMDGS----SRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDG-TNRQAVVKG--SLPHPFALTLFE-DILY 222 (318)
T ss_dssp ETTSC----SCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS-CSCEEEECS--CCSCEEEEEEET-TEEE
T ss_pred EcCCC----CeEEEEECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCC-CceEEEecC--CCCCceEEEEeC-CEEE
Confidence 88643 11122222234568999999666665554 567899999874 222222221 123356777753 3344
Q ss_pred EEeeccccccCCCceEEEEeCCCCceEEEEec
Q 048012 406 LTGTSVERESTTGGLLCFYDREKLELVSRVGI 437 (616)
Q Consensus 406 ~~gs~~~~~~~~dg~i~iwd~~~~~~~~~~~~ 437 (616)
.+-. ..+.|..++..+++.+..+..
T Consensus 223 wtd~-------~~~~V~~~~~~~G~~~~~i~~ 247 (318)
T 3sov_A 223 WTDW-------STHSILACNKYTGEGLREIHS 247 (318)
T ss_dssp EEET-------TTTEEEEEETTTCCSCEEEEC
T ss_pred EEec-------CCCeEEEEECCCCCceEEEeC
Confidence 4433 678999999988887777654
No 282
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.06 E-value=7.4e-05 Score=82.17 Aligned_cols=240 Identities=10% Similarity=0.022 Sum_probs=124.2
Q ss_pred EEEecC-CCCeEEEEeCCC-----------eEEEEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEE
Q 048012 201 NLSWSP-TSDRFLCVTGSA-----------QAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILT 268 (616)
Q Consensus 201 ~l~~sp-~g~~l~~~s~d~-----------~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s 268 (616)
.+++.+ +++.++.|+.+. .+.+||....+..... .+ ...+.....++++..++ .+++.
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~-------~~--~~~~~~~~~~~~~~~~g-~lyv~ 259 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRT-------VT--VTKHDMFCPGISMDGNG-QIVVT 259 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCE-------EE--ECSCCCSSCEEEECTTS-CEEEE
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCc-------cc--CCCCCCccccccCCCCC-CEEEe
Confidence 556666 777777776432 5788998876542221 01 01122223345666766 58888
Q ss_pred EeC-CCCEEEEECCCccccceEEeeeccCCCCccEEEEEECCCCCeEEEEe-CC-----CcEEEEeCCCCCCCCCce---
Q 048012 269 SSE-DGSLRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWDCDGKCIAGGI-GD-----GSIQVWNLKPGWGSRPDI--- 338 (616)
Q Consensus 269 ~s~-Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~g~-~d-----g~I~iwd~~~~~~~~~~~--- 338 (616)
|+. +..+.+||..+..... + ... ...+.. .+++..++|++++.|+ .+ ..+.+||..+.. ...+
T Consensus 260 GG~~~~~v~~yd~~t~~W~~-~-~~~--~~~R~~-~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~--W~~~~~~ 332 (656)
T 1k3i_A 260 GGNDAKKTSLYDSSSDSWIP-G-PDM--QVARGY-QSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKT--WTSLPNA 332 (656)
T ss_dssp CSSSTTCEEEEEGGGTEEEE-C-CCC--SSCCSS-CEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTE--EEEETTS
T ss_pred CCCCCCceEEecCcCCceeE-C-CCC--Cccccc-cceEEecCCeEEEEeCcccCCcccccceEeCCCCCc--ceeCCCc
Confidence 874 5689999987643221 1 111 112212 3445667899999988 44 469999987641 1111
Q ss_pred --eeecCCCCCeEEEEEcCCCCeEEEEecCC---------cEEEEeCCCCCCcceEecCCCC-------CCcceeEEEC-
Q 048012 339 --HVEKGHSDDITALKFSSDGRILLSRSFDG---------SLKVWDLRKMKEPLKVFEDLPN-------NYAQTNVAFS- 399 (616)
Q Consensus 339 --~~~~~h~~~V~~l~~spdg~~l~s~s~Dg---------~v~lwd~~~~~~~~~~~~~~~~-------~~~v~~v~fs- 399 (616)
..+..... ...+..++.+++.++.+| .+..||..+... ......... ...-.++.|.
T Consensus 333 ~~~p~~~~~~---~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w-~~~~~~~~~~~~~~~~~~~~~av~~~~ 408 (656)
T 1k3i_A 333 KVNPMLTADK---QGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGD-VKSAGKRQSNRGVAPDAMCGNAVMYDA 408 (656)
T ss_dssp CSGGGCCCCT---TGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCE-EEEEEECEETTEECCCCBTCEEEEEET
T ss_pred cccccccccc---cceeecCCceEEEECCCCcEEEecCccceeeeecCCcce-eecCCccccccccCCCCCCCceEeccC
Confidence 00000000 012234555555565444 467888875431 111111110 1112344554
Q ss_pred CCCCEEEEeeccccc-cCCCc---eEEEEeCCCCceEEEE--ecCCCCCeEEEEEcCCCCcEEEEecc
Q 048012 400 PDEQLFLTGTSVERE-STTGG---LLCFYDREKLELVSRV--GISPACSVVQCAWHPKLNQIFATAGD 461 (616)
Q Consensus 400 pdg~~l~~gs~~~~~-~~~dg---~i~iwd~~~~~~~~~~--~~~~~~~v~~~~~~p~~~~l~~~~~d 461 (616)
.+++++++|+..... ...-. .|.+||..+....... ..+....-.+++..|++..+++++.+
T Consensus 409 ~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~ 476 (656)
T 1k3i_A 409 VKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQR 476 (656)
T ss_dssp TTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBS
T ss_pred CCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcc
Confidence 477888887731100 00011 6888998877654433 22222222345667888888877753
No 283
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.06 E-value=0.00019 Score=67.69 Aligned_cols=181 Identities=8% Similarity=-0.022 Sum_probs=113.2
Q ss_pred eEEEEecCCCCeEEEEeCCCeEEEEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEEE
Q 048012 199 VRNLSWSPTSDRFLCVTGSAQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIW 278 (616)
Q Consensus 199 v~~l~~sp~g~~l~~~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iw 278 (616)
...|.|+. +.++.+.+.++.|+++|+.++++.... +... ..-..+.+. +..+++..-.++.+.+|
T Consensus 57 tqGL~~~~-~~Ly~stG~~g~v~~iD~~Tgkv~~~~-----------l~~~-~FgeGit~~--g~~Ly~ltw~~~~v~V~ 121 (268)
T 3nok_A 57 TQGLVFHQ-GHFFESTGHQGTLRQLSLESAQPVWME-----------RLGN-IFAEGLASD--GERLYQLTWTEGLLFTW 121 (268)
T ss_dssp EEEEEEET-TEEEEEETTTTEEEECCSSCSSCSEEE-----------ECTT-CCEEEEEEC--SSCEEEEESSSCEEEEE
T ss_pred cceEEEEC-CEEEEEcCCCCEEEEEECCCCcEEeEE-----------CCCC-cceeEEEEe--CCEEEEEEccCCEEEEE
Confidence 57788873 444555566689999999987753321 1111 111234443 44677777788999999
Q ss_pred ECCCccccceEEeeeccCCCCccEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCCCCCceeeecC--CC---CCeEEEEE
Q 048012 279 DVNEFKSQKQVIKPKLARPGRVAVTTCAWDCDGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKG--HS---DDITALKF 353 (616)
Q Consensus 279 d~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~--h~---~~V~~l~~ 353 (616)
|..+.+....+... +. -..++ ++++.|+.+..++.|+++|..+. ..+..+.. +. ..++.+.|
T Consensus 122 D~~Tl~~~~ti~~~----~e---GwGLt--~Dg~~L~vSdGs~~l~~iDp~T~----~v~~~I~V~~~g~~v~~lNeLe~ 188 (268)
T 3nok_A 122 SGMPPQRERTTRYS----GE---GWGLC--YWNGKLVRSDGGTMLTFHEPDGF----ALVGAVQVKLRGQPVELINELEC 188 (268)
T ss_dssp ETTTTEEEEEEECS----SC---CCCEE--EETTEEEEECSSSEEEEECTTTC----CEEEEEECEETTEECCCEEEEEE
T ss_pred ECCcCcEEEEEeCC----Cc---eeEEe--cCCCEEEEECCCCEEEEEcCCCC----eEEEEEEeCCCCcccccccccEE
Confidence 99988777666432 11 12333 46788888777899999998875 34333322 22 23567787
Q ss_pred cCCCCeEEEEecCCcEEEEeCCCCCCcceEecC-----------CCCCCcceeEEECCCCCEEEEee
Q 048012 354 SSDGRILLSRSFDGSLKVWDLRKMKEPLKVFED-----------LPNNYAQTNVAFSPDEQLFLTGT 409 (616)
Q Consensus 354 spdg~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~-----------~~~~~~v~~v~fspdg~~l~~gs 409 (616)
. +|++++..-.++.|.+.|..+++. +..+.. .........|||+|+++.|++.+
T Consensus 189 ~-dG~lyanvw~s~~I~vIDp~TG~V-~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG 253 (268)
T 3nok_A 189 A-NGVIYANIWHSSDVLEIDPATGTV-VGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG 253 (268)
T ss_dssp E-TTEEEEEETTCSEEEEECTTTCBE-EEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred e-CCEEEEEECCCCeEEEEeCCCCcE-EEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence 7 776665555688999999987543 333321 11223467899999866555544
No 284
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=98.05 E-value=0.0037 Score=69.45 Aligned_cols=235 Identities=12% Similarity=-0.038 Sum_probs=137.2
Q ss_pred cCCcEEEEeCCCCccccccceecCCCCCCceEEEEecCCCCeEEEEe-CCCeEEEEECCCCeeeeEeeCceeEeecccCC
Q 048012 169 YDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSDRFLCVT-GSAQAKIYDRDGLTLGEFVKGDMYIRDLKNTK 247 (616)
Q Consensus 169 ~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~s-~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~ 247 (616)
....|+..++.... +..+.. ....+..|+|++...+|+.+. ..+.|+.+++++...... . ...+.
T Consensus 402 n~~~Ir~i~l~~~~-----~~~l~~-~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~----~----~~vi~ 467 (791)
T 3m0c_C 402 NRHEVRKMTLDRSE-----YTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSS----Y----DTVIS 467 (791)
T ss_dssp CBSSEEEECTTSCC-----CEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC------------C----EEEEC
T ss_pred cccceeEeeccCCc-----ceeeec-CCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcc----e----eEEEe
Confidence 34567777776532 111111 234578999998666655544 457888888876321000 0 00011
Q ss_pred CcccceEEEEEcCCCCCEEEEEeCCCCEEEEECCCccccceEEeeeccCCCCccEEEEEECCCCCeEEEEe-CC-CcEEE
Q 048012 248 GHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWDCDGKCIAGGI-GD-GSIQV 325 (616)
Q Consensus 248 ~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~g~-~d-g~I~i 325 (616)
........|++.+.+++++++-...+.|.+.++.... ...+.... -.....|+++|.+.+|+... .. +.|.+
T Consensus 468 ~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~-~~~l~~~~-----l~~P~gIaVDp~~g~LYwtD~g~~~~I~~ 541 (791)
T 3m0c_C 468 RDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVK-RKTLFREN-----GSKPRAIVVDPVHGFMYWTDWGTPAKIKK 541 (791)
T ss_dssp SSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSS-EEEEEECT-----TCCEEEEEEETTTTEEEEEECSSSCEEEE
T ss_pred cCCCCcceeeeeecCCcEEEEecCCCeEEEEeCCCCe-EEEEEeCC-----CCCcceEEEecCCCCEEEecCCCCCeEEE
Confidence 2234456788887776777787788899999987432 22222211 12478999999766555554 23 67999
Q ss_pred EeCCCCCCCCCceeeecCCCCCeEEEEEcCCCCeEEEEe-cCCcEEEEeCCCCCCcceEecCCCCCCcceeEEECCCCCE
Q 048012 326 WNLKPGWGSRPDIHVEKGHSDDITALKFSSDGRILLSRS-FDGSLKVWDLRKMKEPLKVFEDLPNNYAQTNVAFSPDEQL 404 (616)
Q Consensus 326 wd~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s-~Dg~v~lwd~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~ 404 (616)
.++... .........-.....|++.+.+..|+.+. ..+.|..+++.. .....++...........|++ ++.+
T Consensus 542 ~~~dG~----~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG-~~~~~v~~~~~~l~~P~glav--~~~~ 614 (791)
T 3m0c_C 542 GGLNGV----DIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNG-GNRKTILEDEKRLAHPFSLAV--FEDK 614 (791)
T ss_dssp EETTSC----CEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS-CSCEEEEECTTTTSSEEEEEE--ETTE
T ss_pred EecCCC----ceEEEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCC-CceEEEecCCCccCCCCEEEE--eCCE
Confidence 998753 22222333345688999998666666554 456799999864 333333332111222445666 3445
Q ss_pred EEEeeccccccCCCceEEEEeCCCCceEEEEe
Q 048012 405 FLTGTSVERESTTGGLLCFYDREKLELVSRVG 436 (616)
Q Consensus 405 l~~gs~~~~~~~~dg~i~iwd~~~~~~~~~~~ 436 (616)
|+.... ..+.|...|..+++.+..+.
T Consensus 615 lYwtD~------~~~~I~~~dk~tG~~~~~l~ 640 (791)
T 3m0c_C 615 VFWTDI------INEAIFSANRLTGSDVNLLA 640 (791)
T ss_dssp EEEEET------TTTEEEEEETTTCCCCEEEE
T ss_pred EEEEEC------CCCEEEEEeCCCCcceEEee
Confidence 555542 67889999988887777664
No 285
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=98.03 E-value=0.0024 Score=64.00 Aligned_cols=241 Identities=14% Similarity=0.088 Sum_probs=126.3
Q ss_pred cccEEEEEECCCCCEEEEEEcCCcEEEEeCCCCccccccceecCCCCCCceEEEEecCC---CCeEEEEeC-C-----Ce
Q 048012 149 TKIVSALAVDHSGSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPT---SDRFLCVTG-S-----AQ 219 (616)
Q Consensus 149 ~~~V~~v~~sp~g~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~---g~~l~~~s~-d-----~~ 219 (616)
-..-..|+|.|+|+++++ ..+|.|++++ .+.......+. ...........|+|+|+ +..|+++.. . ..
T Consensus 30 l~~P~~ia~~pdG~l~V~-e~~g~I~~i~-~g~~~~~~~~~-v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~ 106 (352)
T 2ism_A 30 LEVPWALAFLPDGGMLIA-ERPGRIRLFR-EGRLSTYAELS-VYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQ 106 (352)
T ss_dssp CSCEEEEEECTTSCEEEE-ETTTEEEEEE-TTEEEEEEECC-CCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEE
T ss_pred CCCceEEEEcCCCeEEEE-eCCCeEEEEE-CCCccEeecce-EeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccE
Confidence 345679999999985554 5679999998 32111111111 11122346899999998 555555443 2 57
Q ss_pred EEEEECCCCeeeeEeeCceeEeecc--cCCCcccceEEEEEcCCCCCEEEEEeCC-------------CCEEEEECCCc-
Q 048012 220 AKIYDRDGLTLGEFVKGDMYIRDLK--NTKGHICGLTCGEWHPKTKETILTSSED-------------GSLRIWDVNEF- 283 (616)
Q Consensus 220 v~vwd~~~~~~~~~~~~~~~~~~~~--~~~~h~~~v~~~~~~p~~~~~l~s~s~D-------------g~v~iwd~~~~- 283 (616)
|..|+..+..+... ...+..+. ....|. ...++|.|++ .++++.+.. +.|.-++....
T Consensus 107 v~r~~~~~~~~~~~---~~l~~~~p~~~~~~h~--~~~l~~~pdG-~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~ 180 (352)
T 2ism_A 107 VVRLRHLGERGVLD---RVVLDGIPARPHGLHS--GGRIAFGPDG-MLYVTTGEVYERELAQDLASLGGKILRLTPEGEP 180 (352)
T ss_dssp EEEEEECSSCEEEE---EEEEEEECCCTTCCCC--CCCEEECTTS-CEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSB
T ss_pred EEEEEeCCCCcCce---EEEEEeCCCCCCCCcC--CceEEECCCC-CEEEEECCCCCCccccCCCCCceEEEEEcCCCCC
Confidence 77787765432111 01111111 112233 3589999988 466654321 34555554320
Q ss_pred -----------cccceEEeeeccCCCCccEEEEEECC-CCCeEEEEeCCCc--------EEEEeCCCC--CC--------
Q 048012 284 -----------KSQKQVIKPKLARPGRVAVTTCAWDC-DGKCIAGGIGDGS--------IQVWNLKPG--WG-------- 333 (616)
Q Consensus 284 -----------~~~~~~~~~~~~~~~~~~v~~~~~sp-~g~~l~~g~~dg~--------I~iwd~~~~--~~-------- 333 (616)
.....+. .+++ ....++|+| +|+++++-..... |.+...... +.
T Consensus 181 p~~npf~~~~~~~~~i~a-----~G~r-np~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~ 254 (352)
T 2ism_A 181 APGNPFLGRRGARPEVYS-----LGHR-NPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGND 254 (352)
T ss_dssp CTTCTTTTCTTSCTTEEE-----ECCS-EECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBCCTTTCCSCCCC
T ss_pred CCCCcccCCCCCCccEEE-----EcCC-CcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCCC
Confidence 0001110 0122 356789999 6666555443333 433322110 00
Q ss_pred --CCCceeeecCCCCCeEEEEEcCCCCeEEEEecCCcEEEEeCCCCCCc------ceEecCCCCCCcceeEEECCCCCEE
Q 048012 334 --SRPDIHVEKGHSDDITALKFSSDGRILLSRSFDGSLKVWDLRKMKEP------LKVFEDLPNNYAQTNVAFSPDEQLF 405 (616)
Q Consensus 334 --~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~v~lwd~~~~~~~------~~~~~~~~~~~~v~~v~fspdg~~l 405 (616)
....+..+..| .....++| .+|.++++.-..+.|...++...... ...+. ....+..+++.|||.++
T Consensus 255 ~~~~~p~~~~~~~-~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~---~~~rp~~v~~~pdG~ly 329 (352)
T 2ism_A 255 PRYRDPLYFWPQG-FPPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETALS---GFGRLREVQVGPDGALY 329 (352)
T ss_dssp TTSCCCSEECTTC-CCEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEE---SSCCEEEEEECTTSCEE
T ss_pred CCCcCCeEecCCC-CCCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchheecc---cCCCeeEEEECCCCcEE
Confidence 01122233223 34677888 56777776666777888877643321 11221 22458899999999877
Q ss_pred EEee
Q 048012 406 LTGT 409 (616)
Q Consensus 406 ~~gs 409 (616)
++..
T Consensus 330 v~~~ 333 (352)
T 2ism_A 330 VTTS 333 (352)
T ss_dssp EEEC
T ss_pred EEEe
Confidence 7764
No 286
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=98.03 E-value=0.0011 Score=68.83 Aligned_cols=259 Identities=12% Similarity=0.063 Sum_probs=141.6
Q ss_pred cEEEEEECCC-C-CEEEEEEcCCcEEEEeCCCCccccccceecCCCCCCceEEEEe-------cCCCCeEEEEeCCC---
Q 048012 151 IVSALAVDHS-G-SRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSW-------SPTSDRFLCVTGSA--- 218 (616)
Q Consensus 151 ~V~~v~~sp~-g-~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~-------sp~g~~l~~~s~d~--- 218 (616)
....|+|+|. . +++++....+.|++.|+.... +..+.............|+| +++|++|+++...+
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~--v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~ 217 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRM--LSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKG 217 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTE--EEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTG
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCE--EEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCc
Confidence 4678899983 4 444444444678888877632 22221111112235899999 99999777776654
Q ss_pred ----eEEEEECCC-CeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEEEECC-------Cccc-
Q 048012 219 ----QAKIYDRDG-LTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVN-------EFKS- 285 (616)
Q Consensus 219 ----~v~vwd~~~-~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~-------~~~~- 285 (616)
.|.+++... +.+.. ..+. ..+.. -.....++++|+++.++++-..++.|..+|+. ++..
T Consensus 218 ~~~~~V~~i~r~~~G~~~~--~~~~--~~v~~----~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~ 289 (496)
T 3kya_A 218 DESPSVYIIKRNADGTFDD--RSDI--QLIAA----YKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSW 289 (496)
T ss_dssp GGEEEEEEEECCTTSCCST--TSCE--EEEEE----ESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCC
T ss_pred ccCceEEEEecCCCCceee--cccc--eeecc----CCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceee
Confidence 255665443 12100 0000 00111 12345678899777788888888999999987 3332
Q ss_pred ----------cceEEeeeccCCCCccEEEEEECCCCCeEEEE-eCCCcEEEEeCCCCCCCCCceeeecC------C----
Q 048012 286 ----------QKQVIKPKLARPGRVAVTTCAWDCDGKCIAGG-IGDGSIQVWNLKPGWGSRPDIHVEKG------H---- 344 (616)
Q Consensus 286 ----------~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~g-~~dg~I~iwd~~~~~~~~~~~~~~~~------h---- 344 (616)
...+. . .........++|+|+|++|+.+ +....|+.++.............+-+ +
T Consensus 290 tp~~~~~~g~~~~l~--~--~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~ 365 (496)
T 3kya_A 290 DPIVKNNPNTFKQLF--T--IADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDV 365 (496)
T ss_dssp CCBGGGCTTTEEEEE--E--CSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCB
T ss_pred cccccccccccceeE--e--cCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCc
Confidence 01111 1 1112245789999999965444 56778888665431000000011111 1
Q ss_pred -----CCCeE-EEEEc-------CCCCeEEEEecCCcEEEEeCCCCCCcceEecCCC----------------------C
Q 048012 345 -----SDDIT-ALKFS-------SDGRILLSRSFDGSLKVWDLRKMKEPLKVFEDLP----------------------N 389 (616)
Q Consensus 345 -----~~~V~-~l~~s-------pdg~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~----------------------~ 389 (616)
-.... .++.. .+|.++++=....+|+.++.. + . +.++.+.. .
T Consensus 366 ~~~a~f~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~~~-G-~-v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~ 442 (496)
T 3kya_A 366 GTEARMNNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVTPE-G-I-VSTYAGRGASTSLADGNQWGTDDGDLREVAR 442 (496)
T ss_dssp GGGCBCSSEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEECTT-C-B-EEEEEESCTTHHHHHSCSCCCCCEETTTTCC
T ss_pred ccccccCCCeEEEEEccccccccCCCeEEEEECCCCEEEEEeCC-C-C-EEEEecccccccccCccccccCCCCchhhhh
Confidence 01234 45554 567777777778899999843 3 2 33332210 0
Q ss_pred CCcceeEEECCC-CCEEEEeeccccccCCCceEEEEeCCCCceEE
Q 048012 390 NYAQTNVAFSPD-EQLFLTGTSVERESTTGGLLCFYDREKLELVS 433 (616)
Q Consensus 390 ~~~v~~v~fspd-g~~l~~gs~~~~~~~~dg~i~iwd~~~~~~~~ 433 (616)
-.....|+++++ +.++++-+ ....|+.+++....++.
T Consensus 443 f~~P~gIavd~~~g~lyVaD~-------~N~rIrki~~~~~~~~~ 480 (496)
T 3kya_A 443 FRDVSGLVYDDVKEMFYVHDQ-------VGHTIRTISMEQEENVA 480 (496)
T ss_dssp CSSEEEEEEETTTTEEEEEET-------TTTEEEEEEECCCC---
T ss_pred cCCCcEEEEECCCCEEEEEeC-------CCCEEEEEECCCCcccc
Confidence 123567888886 55555444 67788888876655443
No 287
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.99 E-value=0.0018 Score=63.10 Aligned_cols=214 Identities=12% Similarity=0.091 Sum_probs=127.5
Q ss_pred eEEEEecCCCCeEEEEe-CCCeEEEEECCCCeeeeEeeCceeEeecccCC--C-cccceEEEEE---cCCCCCEEEEEe-
Q 048012 199 VRNLSWSPTSDRFLCVT-GSAQAKIYDRDGLTLGEFVKGDMYIRDLKNTK--G-HICGLTCGEW---HPKTKETILTSS- 270 (616)
Q Consensus 199 v~~l~~sp~g~~l~~~s-~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~--~-h~~~v~~~~~---~p~~~~~l~s~s- 270 (616)
..++.|.+....|++++ ..+.|..|+..+....+.. +.... + ....+..+.| .|++ .++++..
T Consensus 15 PE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~--------~~~~s~~g~~~~~~sGl~~~~~D~~g-rL~vv~~~ 85 (334)
T 2p9w_A 15 PEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVV--------IDGASSNGDGEQQMSGLSLLTHDNSK-RLFAVMKN 85 (334)
T ss_dssp CSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEEC--------CTTTCCSSCCSEEEEEEEESSSSSCC-EEEEEEEE
T ss_pred CcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEe--------cCCccccCCCcceeeEEEEeccCCCC-cEEEEEcc
Confidence 45688988777777676 6899999999855432221 11100 1 1123578999 5774 4665443
Q ss_pred ------------CCCCEEEEECC---CccccceEEeeeccCC-------CCccEEEEEECCCCCeEEEEeCC-CcEEEEe
Q 048012 271 ------------EDGSLRIWDVN---EFKSQKQVIKPKLARP-------GRVAVTTCAWDCDGKCIAGGIGD-GSIQVWN 327 (616)
Q Consensus 271 ------------~Dg~v~iwd~~---~~~~~~~~~~~~~~~~-------~~~~v~~~~~sp~g~~l~~g~~d-g~I~iwd 327 (616)
.+..|..||+. +++............+ ....+..++..++|+..++++.- +.|..++
T Consensus 86 ~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~ 165 (334)
T 2p9w_A 86 AKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVS 165 (334)
T ss_dssp TTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEEC
T ss_pred cccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEe
Confidence 25779999998 6655443332111100 11258899999999999999888 8888877
Q ss_pred CCCCCCCCCceeee------cCCCCCeEEEEEcCCCCeEEEEecCCcEEEEeCCCCCC-cceEec-CCC-CCCcceeE-E
Q 048012 328 LKPGWGSRPDIHVE------KGHSDDITALKFSSDGRILLSRSFDGSLKVWDLRKMKE-PLKVFE-DLP-NNYAQTNV-A 397 (616)
Q Consensus 328 ~~~~~~~~~~~~~~------~~h~~~V~~l~~spdg~~l~s~s~Dg~v~lwd~~~~~~-~~~~~~-~~~-~~~~v~~v-~ 397 (616)
.... .+..+ .......+.|+++|+|++|++....|.|..+|+..... .+..-. +.. .......+ .
T Consensus 166 pdG~-----~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~pv~~~v~~~~~G~~~~~~~~dgilp 240 (334)
T 2p9w_A 166 ADGK-----TVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKPYAWPEPVKINGDFGTLSGTEKIVT 240 (334)
T ss_dssp TTSC-----CEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSSSCCCEECEESSCCCCCTTEEEEEE
T ss_pred CCCC-----EEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCCcceeecccccCCcccccCcccccc
Confidence 6542 12211 11122367999999999998887799999999984321 011110 110 11112332 3
Q ss_pred ECCCCCEEEEeeccccccCCCceEEEEeCCCCceE
Q 048012 398 FSPDEQLFLTGTSVERESTTGGLLCFYDREKLELV 432 (616)
Q Consensus 398 fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~~~~~ 432 (616)
.-.+|+.|+++.. ..+.+.+.+...++..
T Consensus 241 ~~~~G~vllV~~~------~~~~~~l~S~DgW~sa 269 (334)
T 2p9w_A 241 VPVGNESVLVGAR------APYAISFRSWDNWKSA 269 (334)
T ss_dssp EEETTEEEEEEEE------TTEEEEEECSSTTSEE
T ss_pred cccCCEEEEEEcC------CCCEEEEECCCCccee
Confidence 3347777555542 5666777776555443
No 288
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=97.98 E-value=0.00033 Score=72.51 Aligned_cols=156 Identities=8% Similarity=0.059 Sum_probs=100.1
Q ss_pred cEEEEEECC-CCCeEEEEeCCCcEEEEeCCCCCCCCCceeeecCCCCCeEEEEEcCCCCeEEEEec-CC----cEEEEeC
Q 048012 301 AVTTCAWDC-DGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHSDDITALKFSSDGRILLSRSF-DG----SLKVWDL 374 (616)
Q Consensus 301 ~v~~~~~sp-~g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~-Dg----~v~lwd~ 374 (616)
....++|+| ++..|+++...+.|+.+|+..+ .+..+.........|+|+++|++|+.+.. ++ .+.+++.
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~-----~v~~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~ 212 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKE-----YVSTVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTR 212 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTT-----EEEEEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEG
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCC-----EEEEEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeC
Confidence 356789998 4555666655588999998764 23333334456889999999996666654 22 2333443
Q ss_pred CCCCCcceEecCCCCCCcceeEEECC-CCCEEEEeeccccccCCCceEEEEeCCCCceEEEEecCCCCCeEEEEEcCCCC
Q 048012 375 RKMKEPLKVFEDLPNNYAQTNVAFSP-DEQLFLTGTSVERESTTGGLLCFYDREKLELVSRVGISPACSVVQCAWHPKLN 453 (616)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~v~~v~fsp-dg~~l~~gs~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~ 453 (616)
...-.....+.. ......++++| ++.++++-. ..+.|+.|+..++................++|+|+++
T Consensus 213 ~g~~~~~~~l~~---~~~p~giavdp~~g~lyv~d~-------~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~ 282 (430)
T 3tc9_A 213 ESGFKVITELTK---GQNCNGAETHPINGELYFNSW-------NAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGN 282 (430)
T ss_dssp GGTSCSEEEEEE---CSSCCCEEECTTTCCEEEEET-------TTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSS
T ss_pred CCceeeeeeecc---CCCceEEEEeCCCCEEEEEEC-------CCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCC
Confidence 321111122222 12367799999 666555554 6789999999877653333333334578999999999
Q ss_pred cEEEEeccCCCCceEEEeccc
Q 048012 454 QIFATAGDKSQGGTHILYDPR 474 (616)
Q Consensus 454 ~l~~~~~d~~~~~~~~v~~~~ 474 (616)
+|+++... .+.+..++..
T Consensus 283 ~lyv~d~~---~~~I~~~~~d 300 (430)
T 3tc9_A 283 YAYIVVVN---QHYILRSDYD 300 (430)
T ss_dssp EEEEEETT---TTEEEEEEEE
T ss_pred EEEEEECC---CCEEEEEeCC
Confidence 88887764 6777777654
No 289
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=97.97 E-value=0.00054 Score=63.95 Aligned_cols=182 Identities=11% Similarity=0.056 Sum_probs=112.0
Q ss_pred ceEEEEecCCCCeEEEEeCC---CeEEEEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCC
Q 048012 198 QVRNLSWSPTSDRFLCVTGS---AQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGS 274 (616)
Q Consensus 198 ~v~~l~~sp~g~~l~~~s~d---~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~ 274 (616)
-...|.|+. ..|+.+++. ..|+++|+.++++..... +..+. .-..+.+. +..+++..-.++.
T Consensus 22 ftqGL~~~~--~~LyestG~~g~S~v~~vD~~tgkv~~~~~----------l~~~~-fgeGi~~~--~~~ly~ltw~~~~ 86 (243)
T 3mbr_X 22 FTEGLFYLR--GHLYESTGETGRSSVRKVDLETGRILQRAE----------VPPPY-FGAGIVAW--RDRLIQLTWRNHE 86 (243)
T ss_dssp CEEEEEEET--TEEEEEECCTTSCEEEEEETTTCCEEEEEE----------CCTTC-CEEEEEEE--TTEEEEEESSSSE
T ss_pred ccccEEEEC--CEEEEECCCCCCceEEEEECCCCCEEEEEe----------CCCCc-ceeEEEEe--CCEEEEEEeeCCE
Confidence 477889986 455555544 489999999887643321 11111 11223333 3356666667899
Q ss_pred EEEEECCCccccceEEeeeccCCCCccEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCCCCCceeeecC--CC---CCeE
Q 048012 275 LRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWDCDGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKG--HS---DDIT 349 (616)
Q Consensus 275 v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~--h~---~~V~ 349 (616)
+.+||..+.+....+.... . -..++ +++..|+++..++.|.++|..+. ..+..+.- +. ..++
T Consensus 87 v~v~D~~tl~~~~ti~~~~-----~--Gwglt--~dg~~L~vSdgs~~l~~iDp~t~----~~~~~I~V~~~g~~~~~lN 153 (243)
T 3mbr_X 87 GFVYDLATLTPRARFRYPG-----E--GWALT--SDDSHLYMSDGTAVIRKLDPDTL----QQVGSIKVTAGGRPLDNLN 153 (243)
T ss_dssp EEEEETTTTEEEEEEECSS-----C--CCEEE--ECSSCEEEECSSSEEEEECTTTC----CEEEEEECEETTEECCCEE
T ss_pred EEEEECCcCcEEEEEeCCC-----C--ceEEe--eCCCEEEEECCCCeEEEEeCCCC----eEEEEEEEccCCcccccce
Confidence 9999999887766654321 1 13444 45677777777889999999875 33333322 21 2356
Q ss_pred EEEEcCCCCeEEEEecCCcEEEEeCCCCCCcceEecC-----------CCCCCcceeEEECCCCCEEEEee
Q 048012 350 ALKFSSDGRILLSRSFDGSLKVWDLRKMKEPLKVFED-----------LPNNYAQTNVAFSPDEQLFLTGT 409 (616)
Q Consensus 350 ~l~~spdg~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~-----------~~~~~~v~~v~fspdg~~l~~gs 409 (616)
.+.|. +|++++..-.+..|.+.|..+++. +..+.. .........|+|+|+++.|++.+
T Consensus 154 eLe~~-~G~lyanvw~s~~I~vIDp~tG~V-~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTG 222 (243)
T 3mbr_X 154 ELEWV-NGELLANVWLTSRIARIDPASGKV-VAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTG 222 (243)
T ss_dssp EEEEE-TTEEEEEETTTTEEEEECTTTCBE-EEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEE
T ss_pred eeEEe-CCEEEEEECCCCeEEEEECCCCCE-EEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEEC
Confidence 67765 676665555678999999987543 333321 11223457899999877766665
No 290
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.94 E-value=0.00066 Score=66.15 Aligned_cols=166 Identities=10% Similarity=0.062 Sum_probs=106.2
Q ss_pred ceEEEEEcCCCCCEEEEEeCCCCEEEEECCCccccceEEeeecc--CCCCccEEEEEE---CCCCCeEEEEeC-------
Q 048012 252 GLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLA--RPGRVAVTTCAW---DCDGKCIAGGIG------- 319 (616)
Q Consensus 252 ~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~--~~~~~~v~~~~~---sp~g~~l~~g~~------- 319 (616)
--.++.|++....++++.-..++|..||...+... .+...... ......+..+.| .++++++++...
T Consensus 14 yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~-~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~ 92 (334)
T 2p9w_A 14 TPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHF-NVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFA 92 (334)
T ss_dssp CCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEE-EECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTT
T ss_pred CCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEE-EEecCCccccCCCcceeeEEEEeccCCCCcEEEEEccccccccc
Confidence 34578898866544444447899999998643222 22111111 122335689999 688888776442
Q ss_pred ------CCcEEEEeCC---CCCCCCCceeeecCC-----------CCCeEEEEEcCCCCeEEEEecC-CcEEEEeCCCCC
Q 048012 320 ------DGSIQVWNLK---PGWGSRPDIHVEKGH-----------SDDITALKFSSDGRILLSRSFD-GSLKVWDLRKMK 378 (616)
Q Consensus 320 ------dg~I~iwd~~---~~~~~~~~~~~~~~h-----------~~~V~~l~~spdg~~l~s~s~D-g~v~lwd~~~~~ 378 (616)
+..|..||+. ++. ......+... ......|+..++|+..++++.- +.|..++... +
T Consensus 93 g~~~~g~~~v~~~Dl~~~~tg~--~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG-~ 169 (334)
T 2p9w_A 93 DQSSHGASSFHSFNLPLSENSK--PVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADG-K 169 (334)
T ss_dssp SCCSSSCCEEEEEESSCCTTCC--CSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTS-C
T ss_pred ccccCCCCEEEEEcCCcCCCCC--EEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCC-C
Confidence 6779999998 541 1111122111 1247899999999999999888 8877777653 2
Q ss_pred CcceEec-CC---CCCCcceeEEECCCCCEEEEeeccccccCCCceEEEEeCCCC
Q 048012 379 EPLKVFE-DL---PNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREKL 429 (616)
Q Consensus 379 ~~~~~~~-~~---~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~~ 429 (616)
.+..+. .. ......+.|+++|+|..|++.. ..|.|..+|+.+.
T Consensus 170 -~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~-------~~g~L~~fD~~~p 216 (334)
T 2p9w_A 170 -TVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFG-------GPRALTAFDVSKP 216 (334)
T ss_dssp -CEEEEEECCCCSSSCCSCSEEEEETTTTEEEEES-------SSSSEEEEECSSS
T ss_pred -EEeeeeecCCCcccccCcceEEEeCCCCEEEEEc-------CCCeEEEEcCCCC
Confidence 222221 11 1123367899999999999988 6899999998853
No 291
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=97.94 E-value=0.0064 Score=67.54 Aligned_cols=225 Identities=9% Similarity=-0.051 Sum_probs=132.1
Q ss_pred EEEeCCCeEEEEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEEEECCCccc---cce
Q 048012 212 LCVTGSAQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKS---QKQ 288 (616)
Q Consensus 212 ~~~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~---~~~ 288 (616)
+..+....|+..++.+.....+ ......+..++|++....++++-...+.|+.+++..... ...
T Consensus 398 Ll~an~~~Ir~i~l~~~~~~~l-------------~~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~ 464 (791)
T 3m0c_C 398 LFFTNRHEVRKMTLDRSEYTSL-------------IPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDT 464 (791)
T ss_dssp EEEECBSSEEEECTTSCCCEEE-------------ECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEE
T ss_pred cccccccceeEeeccCCcceee-------------ecCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeE
Confidence 3344556777777775543222 122345678999986666677777778899999875321 111
Q ss_pred EEeeeccCCCCccEEEEEECCCCC-eEEEEeCCCcEEEEeCCCCCCCCCceeeecCCCCCeEEEEEcCCCCeEEEEec-C
Q 048012 289 VIKPKLARPGRVAVTTCAWDCDGK-CIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHSDDITALKFSSDGRILLSRSF-D 366 (616)
Q Consensus 289 ~~~~~~~~~~~~~v~~~~~sp~g~-~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~-D 366 (616)
++. ........|++.+.++ ++++-...+.|.+.++... ...............|++.|.+.+|+.... .
T Consensus 465 vi~-----~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~----~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~ 535 (791)
T 3m0c_C 465 VIS-----RDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV----KRKTLFRENGSKPRAIVVDPVHGFMYWTDWGT 535 (791)
T ss_dssp EEC-----SSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSS----SEEEEEECTTCCEEEEEEETTTTEEEEEECSS
T ss_pred EEe-----cCCCCcceeeeeecCCcEEEEecCCCeEEEEeCCCC----eEEEEEeCCCCCcceEEEecCCCCEEEecCCC
Confidence 211 1111456788887665 5555566789999998753 222222333455889999997655555542 3
Q ss_pred -CcEEEEeCCCCCCcceEecCCCCCCcceeEEECCCCCEEEEeeccccccCCCceEEEEeCCCCceEEEEecC-CCCCeE
Q 048012 367 -GSLKVWDLRKMKEPLKVFEDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREKLELVSRVGIS-PACSVV 444 (616)
Q Consensus 367 -g~v~lwd~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~v~ 444 (616)
+.|...++.. .....++. ........|++++.+..|+.+.. ..+.|..+++........+... .-....
T Consensus 536 ~~~I~~~~~dG-~~~~~lv~--~~l~~P~GLavD~~~~~LYwaD~------~~~~I~~~d~dG~~~~~v~~~~~~l~~P~ 606 (791)
T 3m0c_C 536 PAKIKKGGLNG-VDIYSLVT--ENIQWPNGITLDLLSGRLYWVDS------KLHSISSIDVNGGNRKTILEDEKRLAHPF 606 (791)
T ss_dssp SCEEEEEETTS-CCEEEEEC--SSCSCEEEEEEETTTTEEEEEET------TTTEEEEEETTSCSCEEEEECTTTTSSEE
T ss_pred CCeEEEEecCC-CceEEEEe--CCCCCceEEEEecCCCeEEEEeC------CCCcEEEEecCCCceEEEecCCCccCCCC
Confidence 6788888864 32222222 12245789999988888877753 5678999998655443333221 112345
Q ss_pred EEEEcCCCCcEEEEeccCCCCceEEEec
Q 048012 445 QCAWHPKLNQIFATAGDKSQGGTHILYD 472 (616)
Q Consensus 445 ~~~~~p~~~~l~~~~~d~~~~~~~~v~~ 472 (616)
.|+.. +..|+.+... .+.+...+
T Consensus 607 glav~--~~~lYwtD~~---~~~I~~~d 629 (791)
T 3m0c_C 607 SLAVF--EDKVFWTDII---NEAIFSAN 629 (791)
T ss_dssp EEEEE--TTEEEEEETT---TTEEEEEE
T ss_pred EEEEe--CCEEEEEECC---CCEEEEEe
Confidence 66664 3467777653 44444444
No 292
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=97.93 E-value=0.0057 Score=61.27 Aligned_cols=154 Identities=14% Similarity=0.132 Sum_probs=84.4
Q ss_pred ceEEEEecCCCCeEEEEeCCCeEEEEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCC---CCCEEEEEeCC--
Q 048012 198 QVRNLSWSPTSDRFLCVTGSAQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPK---TKETILTSSED-- 272 (616)
Q Consensus 198 ~v~~l~~sp~g~~l~~~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~---~~~~l~s~s~D-- 272 (616)
....++|.|+|+ |+++...+.|++++ ++ ....+. .+............++|+|+ ++.++++-...
T Consensus 32 ~P~~ia~~pdG~-l~V~e~~g~I~~i~-~g-~~~~~~-------~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~ 101 (352)
T 2ism_A 32 VPWALAFLPDGG-MLIAERPGRIRLFR-EG-RLSTYA-------ELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEG 101 (352)
T ss_dssp CEEEEEECTTSC-EEEEETTTEEEEEE-TT-EEEEEE-------ECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTT
T ss_pred CceEEEEcCCCe-EEEEeCCCeEEEEE-CC-CccEee-------cceEeecCCCCceeEEECCCCCCCCEEEEEEecCCC
Confidence 367999999998 45566779999998 43 322111 11112223456789999997 44455544432
Q ss_pred ---CCEEEEECCCccc--cceEEeeec---cCCCCccEEEEEECCCCCeEEEEeC-------------CCcEEEEeCCCC
Q 048012 273 ---GSLRIWDVNEFKS--QKQVIKPKL---ARPGRVAVTTCAWDCDGKCIAGGIG-------------DGSIQVWNLKPG 331 (616)
Q Consensus 273 ---g~v~iwd~~~~~~--~~~~~~~~~---~~~~~~~v~~~~~sp~g~~l~~g~~-------------dg~I~iwd~~~~ 331 (616)
..|..|++..... ...+..... ...| ....++|.|+|.++++-+. .|.|..++....
T Consensus 102 ~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h--~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~ 179 (352)
T 2ism_A 102 GLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLH--SGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEGE 179 (352)
T ss_dssp SSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCC--CCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSS
T ss_pred CCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCc--CCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCCC
Confidence 5687888764311 111221111 1112 2368999999976666432 256777766531
Q ss_pred CCC---------CCceeeecCCCCCeEEEEEcC-CCCeEEEEe
Q 048012 332 WGS---------RPDIHVEKGHSDDITALKFSS-DGRILLSRS 364 (616)
Q Consensus 332 ~~~---------~~~~~~~~~h~~~V~~l~~sp-dg~~l~s~s 364 (616)
... ........+|. ....|+|+| +++++++-.
T Consensus 180 ~p~~npf~~~~~~~~~i~a~G~r-np~g~a~d~~~g~l~v~d~ 221 (352)
T 2ism_A 180 PAPGNPFLGRRGARPEVYSLGHR-NPQGLAWHPKTGELFSSEH 221 (352)
T ss_dssp BCTTCTTTTCTTSCTTEEEECCS-EECCCEECTTTCCEEEEEE
T ss_pred CCCCCcccCCCCCCccEEEEcCC-CcccEEEECCCCCEEEEEc
Confidence 000 01111122343 357889999 666655544
No 293
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=97.90 E-value=0.0031 Score=67.82 Aligned_cols=161 Identities=14% Similarity=0.014 Sum_probs=87.5
Q ss_pred CCeEEEEeCCCeEEEEECCCCe-eeeEeeCceeEeecccCCCcccceEEEEEc-CCCCCEEEEEe------CCCCEEEEE
Q 048012 208 SDRFLCVTGSAQAKIYDRDGLT-LGEFVKGDMYIRDLKNTKGHICGLTCGEWH-PKTKETILTSS------EDGSLRIWD 279 (616)
Q Consensus 208 g~~l~~~s~d~~v~vwd~~~~~-~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~-p~~~~~l~s~s------~Dg~v~iwd 279 (616)
+..+++++.++.|..+|..+++ ++.+...... .........+ +.=. .++..++++++ .++.|+.+|
T Consensus 117 ~~~v~~~t~dg~l~AlD~~TG~~~W~~~~~~~~----~~~~~~~sP~--v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD 190 (582)
T 1flg_A 117 GDKVFFGTLDASVVALNKNTGKVVWKKKFADHG----AGYTMTGAPT--IVKDGKTGKVLLIHGSSGDEFGVVGRLFARD 190 (582)
T ss_dssp TTEEEEEETTTEEEEEESSSCCEEEEEECSCGG----GTCBCCSCCE--EEECTTTCCEEEEECCBCGGGCCBCEEEEEC
T ss_pred CCEEEEEeCCCEEEEEECCCCCEEeeecCCCCC----cCcccccCCE--EeCCCcCCcEEEEEeccccccCCCCEEEEEE
Confidence 5678888999999999987554 4443211100 0000001111 1111 01211555554 378999999
Q ss_pred CCCccccceEEeeec--------------cC---------------------CCCccEEEEEECCCCCeEEEEeC-----
Q 048012 280 VNEFKSQKQVIKPKL--------------AR---------------------PGRVAVTTCAWDCDGKCIAGGIG----- 319 (616)
Q Consensus 280 ~~~~~~~~~~~~~~~--------------~~---------------------~~~~~v~~~~~sp~g~~l~~g~~----- 319 (616)
..+++.......... .. .+...-..+++++...+++++..
T Consensus 191 ~~tG~~~W~~~~~~~~~~p~~~~~~~~~g~~g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~ 270 (582)
T 1flg_A 191 PDTGEEIWMRPFVEGHMGRLNGKDSTVTGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPW 270 (582)
T ss_dssp TTTCCEEEEEESSTTCEEEETTEEEEESSCTTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSS
T ss_pred CCCCCEEeecCCCccccccccCcccccccccccccCCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcc
Confidence 998876654321100 00 00001123566777778877763
Q ss_pred ---------------C----CcEEEEeCCCCCCCCCceeee--cCCC--------CCeEEEEEc-CCCC---eEEEEecC
Q 048012 320 ---------------D----GSIQVWNLKPGWGSRPDIHVE--KGHS--------DDITALKFS-SDGR---ILLSRSFD 366 (616)
Q Consensus 320 ---------------d----g~I~iwd~~~~~~~~~~~~~~--~~h~--------~~V~~l~~s-pdg~---~l~s~s~D 366 (616)
| +.|..+|..++ ..+-.+ ..|. .++. +... .+|+ +|+.++.+
T Consensus 271 ~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG----~~~W~~q~~~~d~wd~~~~~~p~l-~~~~~~~G~~~~~v~~~~~~ 345 (582)
T 1flg_A 271 NTWARTAKGGNPHDYDSLYTSGQVGVDPSSG----EVKWFYQHTPNDAWDFSGNNELVL-FDYKAKDGKIVKATAHADRN 345 (582)
T ss_dssp CGGGGSCTTSCSTTCCCTTCSEEEEECTTTC----CEEEEEESSTTCCSCCCCCCCCEE-EEEECSSSCEEEEEEEECTT
T ss_pred cCcccccCCCcccccCCcccceEEEEeCCCC----CEEEEEeCCCCCcccccCCCCcEE-EeeecCCCCEEEEEEEECCC
Confidence 2 68999999987 233332 2232 1121 2221 4674 78889999
Q ss_pred CcEEEEeCCCCCC
Q 048012 367 GSLKVWDLRKMKE 379 (616)
Q Consensus 367 g~v~lwd~~~~~~ 379 (616)
|.|+++|..+++.
T Consensus 346 G~l~~lD~~tG~~ 358 (582)
T 1flg_A 346 GFFYVVDRSNGKL 358 (582)
T ss_dssp SEEEEEETTTCCE
T ss_pred ceEEEEECCCCCE
Confidence 9999999887653
No 294
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=97.89 E-value=9.5e-05 Score=81.54 Aligned_cols=235 Identities=13% Similarity=-0.019 Sum_probs=129.1
Q ss_pred CCcEEEEeCCCCccccccceecCCCCCCceEEEEecCCCCeEEEEe-CCCeEEEEECCCCeeeeEeeCceeEeecccCCC
Q 048012 170 DYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSDRFLCVT-GSAQAKIYDRDGLTLGEFVKGDMYIRDLKNTKG 248 (616)
Q Consensus 170 Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~s-~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 248 (616)
...|++.++.+.. +..+. .....+..|+|++.+..|+.+. ..+.|+.+++.+...... ....+..
T Consensus 385 ~~~I~~id~~~~~-----~~~~~-~~~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~--------~~~~i~~ 450 (699)
T 1n7d_A 385 RHEVRKMTLDRSE-----YTSLI-PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSS--------YDTVISR 450 (699)
T ss_dssp TTC-CEECTTSCC-----EECCS-CCCTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CC--------CCCBCCS
T ss_pred ccceEEEeCCCCc-----ceeee-ccCcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcc--------eEEEEeC
Confidence 4567777776532 11111 1223467889998777766654 457888898875210000 0001111
Q ss_pred cccceEEEEEcCCCCCEEEEEeCCCCEEEEECCCccccceEEeeeccCCCCccEEEEEECCCCCeEEEEe-CC-CcEEEE
Q 048012 249 HICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWDCDGKCIAGGI-GD-GSIQVW 326 (616)
Q Consensus 249 h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~g~-~d-g~I~iw 326 (616)
.......+++.+.+++++++-...+.|.++++.... ...+... .......++++|.+.+|+... .. +.|.++
T Consensus 451 ~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~-~~~l~~~-----~~~~P~giavDp~~g~ly~td~~~~~~I~~~ 524 (699)
T 1n7d_A 451 DIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVK-RKTLFRE-----QGSKPRAIVVDPVHGFMYWTDWGTPAKIKKG 524 (699)
T ss_dssp CC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSCC-EEEECCC-----SSCCCCCEECCSSSSCCEECCCSSSCCEEBC
T ss_pred CCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCCc-eEEEEeC-----CCCCcceEEEccCCCcEEEcccCCCCeEEEE
Confidence 122345677776555666766677889999986432 2222111 111356788998655555443 22 788888
Q ss_pred eCCCCCCCCCceeeecCCCCCeEEEEEcCCCCeEE-EEecCCcEEEEeCCCCCCcceEecCCCCCCcceeEEECCCCCEE
Q 048012 327 NLKPGWGSRPDIHVEKGHSDDITALKFSSDGRILL-SRSFDGSLKVWDLRKMKEPLKVFEDLPNNYAQTNVAFSPDEQLF 405 (616)
Q Consensus 327 d~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~-s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l 405 (616)
++... . ........-.....|+|++++..|+ +-+..+.|..+++.. .....++...........|++..+ .++
T Consensus 525 ~~dG~--~--~~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG-~~~~~~~~~~~~~~~P~glavd~~-~ly 598 (699)
T 1n7d_A 525 GLNGV--D--IYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNG-GNRKTILEDEKRLAHPFSLAVFED-KVF 598 (699)
T ss_dssp CSSSC--C--CCEESCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSS-SCCEEECCCSSSCSSCCCCEEETT-EEE
T ss_pred eCCCC--C--eeEEEeCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCC-CceEEEEecCCcCCCceEeEEECC-EEE
Confidence 87643 1 1111112234567899999765554 444567899999874 222222221111222455666543 333
Q ss_pred EEeeccccccCCCceEEEEeCCCCceEEEEec
Q 048012 406 LTGTSVERESTTGGLLCFYDREKLELVSRVGI 437 (616)
Q Consensus 406 ~~gs~~~~~~~~dg~i~iwd~~~~~~~~~~~~ 437 (616)
++.. ..+.|..++..+++.+..+..
T Consensus 599 wtd~-------~~~~V~~~d~~~G~~~~~i~~ 623 (699)
T 1n7d_A 599 WTDI-------INEAIFSANRLTGSDVNLLAE 623 (699)
T ss_dssp EECS-------TTTCEEEEETTTEEEEECCCT
T ss_pred EEeC-------CCCeEEEEEccCCCceEEeec
Confidence 3333 678899999988888777643
No 295
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=97.86 E-value=0.012 Score=58.97 Aligned_cols=245 Identities=13% Similarity=0.102 Sum_probs=126.3
Q ss_pred cccEEEEEECCCCCEEEEEEcCCcEEEEeCCCCccccccceecCCCCCCceEEEEecCC---CCeEEEEeC----C----
Q 048012 149 TKIVSALAVDHSGSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPT---SDRFLCVTG----S---- 217 (616)
Q Consensus 149 ~~~V~~v~~sp~g~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~---g~~l~~~s~----d---- 217 (616)
-.....|+|.|+|++++ +..+|.|++++..+ ...+..+. +..........|+|+|+ +..|+++.. +
T Consensus 28 l~~P~~ia~~pdG~l~V-~e~~g~I~~~d~~G-~~~~~~~~-v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~ 104 (354)
T 3a9g_A 28 LEVPWSIAPLGGGRYLV-TERPGRLVLISPSG-KKLVASFD-VANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIR 104 (354)
T ss_dssp CSCEEEEEEEETTEEEE-EETTTEEEEECSSC-EEEEEECC-CCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEE
T ss_pred CCCCeEEEEcCCCeEEE-EeCCCEEEEEeCCC-ceEeeccc-eeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcc
Confidence 34578999999997555 56679999997432 11111111 11122345899999998 555554443 2
Q ss_pred CeEEEEECCCC--eeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCC-------------CCEEEEECCC
Q 048012 218 AQAKIYDRDGL--TLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSED-------------GSLRIWDVNE 282 (616)
Q Consensus 218 ~~v~vwd~~~~--~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~D-------------g~v~iwd~~~ 282 (616)
..|..|+..+. .+... ...+..+.....|. ...+.|.|++ .++++.+.. |.|.-++...
T Consensus 105 ~~v~r~~~~~~~~~~~~~---~~l~~~~~~~~~h~--~~~l~~~pDG-~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG 178 (354)
T 3a9g_A 105 NRVIRGRLDGSTFKLKEV---KTLIDGIPGAYIHN--GGRIRFGPDG-MLYITTGDAADPRLAQDLSSLAGKILRVDEEG 178 (354)
T ss_dssp EEEEEEEECSSSCCEEEE---EEEEEEEECCSSCC--CCCEEECTTS-CEEEECCCTTCGGGGTCTTCCSSEEEEECTTS
T ss_pred eEEEEEEECCCCcCcCcc---EEEEEcCCCCCCcC--CceEEECCCC-cEEEEECCCCCCccccCCCCCCeEEEEEcCCC
Confidence 56777776654 11110 00011111112333 4678999988 466654321 3444444432
Q ss_pred ccc------cceEEeeeccCCCCccEEEEEECC-CCCeEEEEeCCC---cEEEEeCCC--CCC----------CCCceee
Q 048012 283 FKS------QKQVIKPKLARPGRVAVTTCAWDC-DGKCIAGGIGDG---SIQVWNLKP--GWG----------SRPDIHV 340 (616)
Q Consensus 283 ~~~------~~~~~~~~~~~~~~~~v~~~~~sp-~g~~l~~g~~dg---~I~iwd~~~--~~~----------~~~~~~~ 340 (616)
.-. ...+.. .+++ ....++|++ +|+++++-.... .|.+...-. ++. ....+..
T Consensus 179 ~~p~~npf~~~~i~a----~G~r-np~Gla~d~~~g~l~v~d~g~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~ 253 (354)
T 3a9g_A 179 RPPADNPFPNSPIWS----YGHR-NPQGIDWHRASGVMVATEHGPVGHDEVNIILKGGNYGWPLATGKAGRGEFVDPVID 253 (354)
T ss_dssp CCCTTSSSTTCCEEE----ECCS-CCCEEEECTTTCCEEEEECCSSSCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEE
T ss_pred CCCCCCCCCCCcEEE----EccC-CcceEEEeCCCCCEEEEecCCCCCcEEEEecCCCcCCCCcccCCCCCCCCcCCEee
Confidence 100 001111 1122 356789999 666555543222 244332111 000 0012222
Q ss_pred e-cCCCCCeEEEEEc-------CCCCeEEEEecCCcEEEEeCCCCCCcc--eEecCCCCCCcceeEEECCCCCEEEEee
Q 048012 341 E-KGHSDDITALKFS-------SDGRILLSRSFDGSLKVWDLRKMKEPL--KVFEDLPNNYAQTNVAFSPDEQLFLTGT 409 (616)
Q Consensus 341 ~-~~h~~~V~~l~~s-------pdg~~l~s~s~Dg~v~lwd~~~~~~~~--~~~~~~~~~~~v~~v~fspdg~~l~~gs 409 (616)
+ ..| .....++|. .+|+++++.-..+.|...++....... ..+.. .....+..+++.|||.++++..
T Consensus 254 ~~~~~-~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~-~~~~rp~~v~~~pDG~lyv~~~ 330 (354)
T 3a9g_A 254 TGSET-WAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFK-NVFGRLRDVVIDDDGGILISTS 330 (354)
T ss_dssp CTTCC-CCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEECT-TTSCCEEEEEECTTSCEEEEEC
T ss_pred cCCCC-cCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeecc-CCCCCeeEEEECCCCcEEEEEe
Confidence 2 223 357888884 567777776677788888887532222 11211 1234588999999997766653
No 296
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=97.82 E-value=0.026 Score=54.41 Aligned_cols=231 Identities=14% Similarity=0.170 Sum_probs=139.1
Q ss_pred CcEEEEeCCCCccccccceecCCCCCCceEEEEecCCCCeEEEEeCCCeEEEEECCCCeeeeEeeCceeEeecccCCCcc
Q 048012 171 YTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSDRFLCVTGSAQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHI 250 (616)
Q Consensus 171 g~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~ 250 (616)
..|.|-|+.......+.. + . .-+.-.+|..+.|+.-. ...+.|+|++....... .. ..
T Consensus 49 ~~VvIiDl~n~~~~~Rrp--i--~----AdsAIMnP~~~ViALra-g~~LQiFnletK~klks------------~~-~~ 106 (365)
T 2xzh_A 49 AQVVIIDMNDPSNPIRRP--I--S----ADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKA------------HT-MT 106 (365)
T ss_dssp EEEEEEETTSTTSCEEEE--C--C----CSEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEE------------EE-CS
T ss_pred CEEEEEECCCCCCccccc--c--c----cceeeeCCCccEEEEec-CCeEEEechHHhhhhcc------------ee-cC
Confidence 368888887654321111 1 1 22344577777666555 68899999997753211 11 12
Q ss_pred cceEEEEEcCCCCCEEEEEeCCCCEEEEECCCccccceEEeeeccCCCCccEEEEEECCCCCeEEEEeC-------CCcE
Q 048012 251 CGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWDCDGKCIAGGIG-------DGSI 323 (616)
Q Consensus 251 ~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~g~~-------dg~I 323 (616)
..|.--.|-.. +.|+-.+ +..|+-|++........+...+.... ...|..-..+++.++++..+- .|.+
T Consensus 107 e~VvfWkWis~--~~L~lVT-~taVyHWs~~~~s~P~kvFdR~~~L~-~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~m 182 (365)
T 2xzh_A 107 DDVTFWKWISL--NTVALVT-DNAVYHWSMEGESQPVKMFDRHSSLA-GCQIINYRTDAKQKWLLLTGISAQQNRVVGAM 182 (365)
T ss_dssp SCEEEEEECSS--SEEEEEE-SSEEEEEESSTTCCCEEEEECCGGGT-TCEEEEEEECTTSCEEEEEEEEEETTEEEEEE
T ss_pred CccEEEEecCC--CeEEEEc-CCcEEEEcccCCCCCceeeecchhcc-cceEEEEEECCCCCEEEEEeEeccCCccceeE
Confidence 35666677654 3555554 46799999975333333332222212 346778888999987665432 4789
Q ss_pred EEEeCCCCCCCCCceeeecCCCCCeEEEEEcCC---CCeEEEEec---CCcEEEEeCCCC---CCcc-----eEecC-CC
Q 048012 324 QVWNLKPGWGSRPDIHVEKGHSDDITALKFSSD---GRILLSRSF---DGSLKVWDLRKM---KEPL-----KVFED-LP 388 (616)
Q Consensus 324 ~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~spd---g~~l~s~s~---Dg~v~lwd~~~~---~~~~-----~~~~~-~~ 388 (616)
.||..+. ..-+.+.+|...-..+.+.-+ ..+|+.+.. .++++|-++... ..+. ..+-. ..
T Consensus 183 QLYS~er-----~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea 257 (365)
T 2xzh_A 183 QLYSVDR-----KVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEA 257 (365)
T ss_dssp EEEETTT-----TEEEEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSSCCTTCCCCCCEEEEECCCTTC
T ss_pred EEEeecc-----cccceeeeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCCCCCCCcccccceeeCCccc
Confidence 9999875 466778888765444433211 123333322 258999998543 1111 11110 01
Q ss_pred CCCcceeEEECCCCCEEEEeeccccccCCCceEEEEeCCCCceEEEEecCC
Q 048012 389 NNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREKLELVSRVGISP 439 (616)
Q Consensus 389 ~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~ 439 (616)
...-..++..|+.-..++.-+ .-|.|++||+.++.++..-.++.
T Consensus 258 ~~DFPVamqvs~kygviyviT-------K~G~ihlyDleTgt~i~~nrIS~ 301 (365)
T 2xzh_A 258 QNDFPVAMQISEKHDVVFLIT-------KYGYIHLYDLETGTCIYMNRISG 301 (365)
T ss_dssp TTCCEEEEEEETTTTEEEEEE-------TTSEEEEEETTTCCEEEEEECCS
T ss_pred cCCceEEEEecccCCEEEEEe-------CCcEEEEEEcccCcEEEEeccCC
Confidence 123356788888888888888 89999999999999999887754
No 297
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=97.81 E-value=0.018 Score=56.86 Aligned_cols=237 Identities=12% Similarity=0.087 Sum_probs=121.8
Q ss_pred cccEEEEEECCCCCEEEEEEcCCcEEEEeCCCCccccccceecCCC--CCCceEEEEecCCCCeEEEEeCCCeEEEEECC
Q 048012 149 TKIVSALAVDHSGSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPS--EGHQVRNLSWSPTSDRFLCVTGSAQAKIYDRD 226 (616)
Q Consensus 149 ~~~V~~v~~sp~g~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~--~~~~v~~l~~sp~g~~l~~~s~d~~v~vwd~~ 226 (616)
...+.+|.|++ +..++ ++..+.|.. ....... +...... ....+..+.+.+++..++ ++.++.|.. ..+
T Consensus 79 ~~~~~~i~~~~-~~~~~-~g~~g~i~~--S~DgG~t---W~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~g~v~~-S~D 149 (327)
T 2xbg_A 79 DYRFNSVSFQG-NEGWI-VGEPPIMLH--TTDGGQS---WSQIPLDPKLPGSPRLIKALGNGSAEM-ITNVGAIYR-TKD 149 (327)
T ss_dssp CCEEEEEEEET-TEEEE-EEETTEEEE--ESSTTSS---CEECCCCTTCSSCEEEEEEEETTEEEE-EETTCCEEE-ESS
T ss_pred CccEEEEEecC-CeEEE-EECCCeEEE--ECCCCCC---ceECccccCCCCCeEEEEEECCCCEEE-EeCCccEEE-EcC
Confidence 44688889976 44444 455665443 2222222 2222211 123467788777665554 444554432 233
Q ss_pred CCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEE-EECCCccccceEEeeeccCCCCccEEEE
Q 048012 227 GLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRI-WDVNEFKSQKQVIKPKLARPGRVAVTTC 305 (616)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~i-wd~~~~~~~~~~~~~~~~~~~~~~v~~~ 305 (616)
++.-+... ...+...+..+.+.+++ .+++.+ .++.|.. +|- .+..-..+.. .....+..+
T Consensus 150 gG~tW~~~-----------~~~~~~~~~~~~~~~~~-~~~~~g-~~G~~~~S~d~-gG~tW~~~~~-----~~~~~~~~~ 210 (327)
T 2xbg_A 150 SGKNWQAL-----------VQEAIGVMRNLNRSPSG-EYVAVS-SRGSFYSTWEP-GQTAWEPHNR-----TTSRRLHNM 210 (327)
T ss_dssp TTSSEEEE-----------ECSCCCCEEEEEECTTS-CEEEEE-TTSSEEEEECT-TCSSCEEEEC-----CSSSCEEEE
T ss_pred CCCCCEEe-----------ecCCCcceEEEEEcCCC-cEEEEE-CCCcEEEEeCC-CCCceeECCC-----CCCCcccee
Confidence 33322221 11334467889999875 456555 4555444 332 1122222211 122368889
Q ss_pred EECCCCCeEEEEeCCCcEEEEeCCCCCCCCCceeee-cCCCCCeEEEEEcCCCCeEEEEecCCcEEEEeCCCCCCcceEe
Q 048012 306 AWDCDGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVE-KGHSDDITALKFSSDGRILLSRSFDGSLKVWDLRKMKEPLKVF 384 (616)
Q Consensus 306 ~~sp~g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~-~~h~~~V~~l~~spdg~~l~s~s~Dg~v~lwd~~~~~~~~~~~ 384 (616)
++.+++.++++ +.+|.|++++...+. ....+..- ..+...+.+|++.+++.+++++. ++.| ++....+ .....+
T Consensus 211 ~~~~~g~~~~~-~~~G~~~~s~~D~G~-tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~-~g~i-~~S~DgG-~tW~~~ 285 (327)
T 2xbg_A 211 GFTPDGRLWMI-VNGGKIAFSDPDNSE-NWGELLSPLRRNSVGFLDLAYRTPNEVWLAGG-AGAL-LCSQDGG-QTWQQD 285 (327)
T ss_dssp EECTTSCEEEE-ETTTEEEEEETTEEE-EECCCBCTTSSCCSCEEEEEESSSSCEEEEES-TTCE-EEESSTT-SSCEEC
T ss_pred EECCCCCEEEE-eCCceEEEecCCCCC-eeEeccCCcccCCcceEEEEecCCCEEEEEeC-CCeE-EEeCCCC-cccEEc
Confidence 99998876654 567888877422120 00111110 11234588999998877666554 7766 3444433 323333
Q ss_pred cCC-CCCCcceeEEECCCCCEEEEeeccccccCCCceEEEEeC
Q 048012 385 EDL-PNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDR 426 (616)
Q Consensus 385 ~~~-~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~ 426 (616)
... .....+.++.|.+++.++++| .+|.|.-++-
T Consensus 286 ~~~~~~~~~~~~v~~~~~~~~~~~G--------~~G~i~~~~~ 320 (327)
T 2xbg_A 286 VDVKKVPSNFYKILFFSPDQGFILG--------QKGILLRYVT 320 (327)
T ss_dssp GGGTTSSSCCCEEEEEETTEEEEEC--------STTEEEEECC
T ss_pred CccCCCCCCeEEEEEECCCceEEEc--------CCceEEEEcC
Confidence 211 112347788888666666555 5787766653
No 298
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=97.74 E-value=0.008 Score=60.19 Aligned_cols=154 Identities=10% Similarity=0.032 Sum_probs=82.2
Q ss_pred eEEEEecCCCCeEEEEeCCCeEEEEECCCCeeeeEeeCceeEeecc-cCCCcccceEEEEEcCC---CCCEEEEEeC---
Q 048012 199 VRNLSWSPTSDRFLCVTGSAQAKIYDRDGLTLGEFVKGDMYIRDLK-NTKGHICGLTCGEWHPK---TKETILTSSE--- 271 (616)
Q Consensus 199 v~~l~~sp~g~~l~~~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~~-~~~~h~~~v~~~~~~p~---~~~~l~s~s~--- 271 (616)
...|+|.|+|++|+++...+.|++++.++.....+ ..+. ...........++|+|+ +..++++-+.
T Consensus 20 P~~i~~~pdG~~l~V~e~~G~i~~~~~~g~~~~~~-------~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~ 92 (353)
T 2g8s_A 20 PWALAFLPDNHGMLITLRGGELRHWQAGKGLSAPL-------SGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGD 92 (353)
T ss_dssp EEEEEECSTTCCEEEEETTTEEEEEETTTEECCCC-------BSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECS
T ss_pred cEEEEEcCCCCEEEEEeCCceEEEEeCCCceeeEe-------cCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCC
Confidence 68899999998556677789999998654321100 0011 11122446789999996 4444544332
Q ss_pred ----CCCEEEEECCCcc----ccceEEeeec---cCCCCccEEEEEECCCCCeEEEEeC-------------CCcEEEEe
Q 048012 272 ----DGSLRIWDVNEFK----SQKQVIKPKL---ARPGRVAVTTCAWDCDGKCIAGGIG-------------DGSIQVWN 327 (616)
Q Consensus 272 ----Dg~v~iwd~~~~~----~~~~~~~~~~---~~~~~~~v~~~~~sp~g~~l~~g~~-------------dg~I~iwd 327 (616)
...|..|++.... ....+..... ...| ....++|.|+|.++++-+. .|.|.-++
T Consensus 93 ~g~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h--~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~ 170 (353)
T 2g8s_A 93 DGKAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNH--FGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLT 170 (353)
T ss_dssp SSCEEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSC--CCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEE
T ss_pred CCCceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcc--cCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEEC
Confidence 2346666664321 1111111111 1112 2457999999976665433 24677777
Q ss_pred CCCCCCC-C--------CceeeecCCCCCeEEEEEcC-CCCeEEE
Q 048012 328 LKPGWGS-R--------PDIHVEKGHSDDITALKFSS-DGRILLS 362 (616)
Q Consensus 328 ~~~~~~~-~--------~~~~~~~~h~~~V~~l~~sp-dg~~l~s 362 (616)
....-.. . .......+|. ....|+|+| +|+++++
T Consensus 171 ~dG~~p~~npf~~~~~~~~~i~a~G~r-np~gl~~d~~~g~l~~~ 214 (353)
T 2g8s_A 171 DQGEIPDDNPFIKESGVRAEIWSYGIR-NPQGMAMNPWSNALWLN 214 (353)
T ss_dssp TTSCCCTTCTTTTSTTSCTTEEEECCS-EEEEEEEETTTTEEEEE
T ss_pred CCCCCCCCCCCcCCCCCCccEEEEcCc-CccceEEECCCCCEEEE
Confidence 6532000 0 0111123443 367899999 6655554
No 299
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=97.73 E-value=0.0025 Score=63.44 Aligned_cols=193 Identities=11% Similarity=0.055 Sum_probs=106.4
Q ss_pred ceEEEEEcCCCCCEEEEEe-------------CCCCEEEEECCCccc-cceEEeeec-cCCCCccEEEEEECC--CCC--
Q 048012 252 GLTCGEWHPKTKETILTSS-------------EDGSLRIWDVNEFKS-QKQVIKPKL-ARPGRVAVTTCAWDC--DGK-- 312 (616)
Q Consensus 252 ~v~~~~~~p~~~~~l~s~s-------------~Dg~v~iwd~~~~~~-~~~~~~~~~-~~~~~~~v~~~~~sp--~g~-- 312 (616)
....+...|++ ++++++ .+|.|.++|..+... ...+..... ..........+.+.+ ++.
T Consensus 51 G~EDi~~~~~G--~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~ 128 (355)
T 3sre_A 51 GSEDLEILPNG--LAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVY 128 (355)
T ss_dssp CCCEEEECTTS--EEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEE
T ss_pred CcceeEEcCCC--eEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEE
Confidence 44566667754 444443 689999999974321 112211110 111122455666544 454
Q ss_pred eEEEEeC--CCcEEEEeCCCCCCCCCceeeecCC-CCCeEEEEEcCCCCeEEEEec-----------------CCcEEEE
Q 048012 313 CIAGGIG--DGSIQVWNLKPGWGSRPDIHVEKGH-SDDITALKFSSDGRILLSRSF-----------------DGSLKVW 372 (616)
Q Consensus 313 ~l~~g~~--dg~I~iwd~~~~~~~~~~~~~~~~h-~~~V~~l~~spdg~~l~s~s~-----------------Dg~v~lw 372 (616)
++++-.. +.+|.+|++.........+..+.+. -...+.+.+.++|.++++... .|.|..+
T Consensus 129 L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~ 208 (355)
T 3sre_A 129 LLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYY 208 (355)
T ss_dssp EEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEE
T ss_pred EEEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEE
Confidence 4444333 4678888776532122223333322 234789999999988777541 2445555
Q ss_pred eCCCCCCcceEecCCCCCCcceeEEECCCCCEEEEeeccccccCCCceEEEEeCCC-CceE--EEEecCCCCCeEEEEEc
Q 048012 373 DLRKMKEPLKVFEDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREK-LELV--SRVGISPACSVVQCAWH 449 (616)
Q Consensus 373 d~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~-~~~~--~~~~~~~~~~v~~~~~~ 449 (616)
|.. ........ -.....++||||++.|+++.+ ..+.|+.|++.. +++. ..+. ..+..-.++..
T Consensus 209 d~~---~~~~~~~~---l~~pNGia~spDg~~lYvadt------~~~~I~~~~~~~~g~l~~~~~~~--~~g~PDGi~vD 274 (355)
T 3sre_A 209 SPN---DVRVVAEG---FDFANGINISPDGKYVYIAEL------LAHKIHVYEKHANWTLTPLRVLS--FDTLVDNISVD 274 (355)
T ss_dssp CTT---CCEEEEEE---ESSEEEEEECTTSSEEEEEEG------GGTEEEEEEECTTSCEEEEEEEE--CSSEEEEEEEC
T ss_pred ECC---eEEEeecC---CcccCcceECCCCCEEEEEeC------CCCeEEEEEECCCCcEecCEEEe--CCCCCceEEEe
Confidence 542 22222222 223678999999998888764 568899999863 3332 2232 23456677888
Q ss_pred C-CCCcEEEEec
Q 048012 450 P-KLNQIFATAG 460 (616)
Q Consensus 450 p-~~~~l~~~~~ 460 (616)
+ +|+..+++..
T Consensus 275 ~e~G~lwva~~~ 286 (355)
T 3sre_A 275 PVTGDLWVGCHP 286 (355)
T ss_dssp TTTCCEEEEEES
T ss_pred CCCCcEEEEecC
Confidence 8 4766555543
No 300
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=97.69 E-value=0.024 Score=56.66 Aligned_cols=236 Identities=11% Similarity=0.029 Sum_probs=122.8
Q ss_pred ceEEEEecCCCCeEEEEeCCCeEEEEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCC---CCCEEEEEeC---
Q 048012 198 QVRNLSWSPTSDRFLCVTGSAQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPK---TKETILTSSE--- 271 (616)
Q Consensus 198 ~v~~l~~sp~g~~l~~~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~---~~~~l~s~s~--- 271 (616)
....|+|.|+|+ |+++...+.|++++.++. ..+. .+............++|+|+ ++.++++-+.
T Consensus 30 ~P~~ia~~pdG~-l~V~e~~g~I~~~d~~G~--~~~~-------~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~ 99 (354)
T 3a9g_A 30 VPWSIAPLGGGR-YLVTERPGRLVLISPSGK--KLVA-------SFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAE 99 (354)
T ss_dssp CEEEEEEEETTE-EEEEETTTEEEEECSSCE--EEEE-------ECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECG
T ss_pred CCeEEEEcCCCe-EEEEeCCCEEEEEeCCCc--eEee-------ccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCC
Confidence 378899999987 555667799999975433 1111 11111222356789999997 4445554432
Q ss_pred C----CCEEEEECCCcc--c--cceEEeeec-cCCCCccEEEEEECCCCCeEEEEeC-------------CCcEEEEeCC
Q 048012 272 D----GSLRIWDVNEFK--S--QKQVIKPKL-ARPGRVAVTTCAWDCDGKCIAGGIG-------------DGSIQVWNLK 329 (616)
Q Consensus 272 D----g~v~iwd~~~~~--~--~~~~~~~~~-~~~~~~~v~~~~~sp~g~~l~~g~~-------------dg~I~iwd~~ 329 (616)
+ ..|..|+..... . ...+..... ...| ....++|.|+|.++++-+. .|.|..++..
T Consensus 100 ~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h--~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~d 177 (354)
T 3a9g_A 100 GGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIH--NGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEE 177 (354)
T ss_dssp GGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSC--CCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTT
T ss_pred CCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCc--CCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCC
Confidence 3 567777765431 1 111111111 1122 3467899999987766432 2566666654
Q ss_pred CCCCCC----CceeeecCCCCCeEEEEEcC-CCCeEEEEecCC---cEEEEeCCCCC-----------------CcceEe
Q 048012 330 PGWGSR----PDIHVEKGHSDDITALKFSS-DGRILLSRSFDG---SLKVWDLRKMK-----------------EPLKVF 384 (616)
Q Consensus 330 ~~~~~~----~~~~~~~~h~~~V~~l~~sp-dg~~l~s~s~Dg---~v~lwd~~~~~-----------------~~~~~~ 384 (616)
...... .......+|.. ...|+|+| +|+++++-...+ .|.+.. .+. .++..+
T Consensus 178 G~~p~~npf~~~~i~a~G~rn-p~Gla~d~~~g~l~v~d~g~~~~dei~~i~--~G~nyGwp~~~g~~~~~~~~~p~~~~ 254 (354)
T 3a9g_A 178 GRPPADNPFPNSPIWSYGHRN-PQGIDWHRASGVMVATEHGPVGHDEVNIIL--KGGNYGWPLATGKAGRGEFVDPVIDT 254 (354)
T ss_dssp SCCCTTSSSTTCCEEEECCSC-CCEEEECTTTCCEEEEECCSSSCCEEEEEC--TTCBCCTTTCCSCCCCTTSCCCSEEC
T ss_pred CCCCCCCCCCCCcEEEEccCC-cceEEEeCCCCCEEEEecCCCCCcEEEEec--CCCcCCCCcccCCCCCCCCcCCEeec
Confidence 310000 01112234433 56899999 676655543222 233322 111 122222
Q ss_pred cCCCCCCcceeEEEC-------CCCCEEEEeeccccccCCCceEEEEeCCCC-ceE--EEEecCCCCCeEEEEEcCCCCc
Q 048012 385 EDLPNNYAQTNVAFS-------PDEQLFLTGTSVERESTTGGLLCFYDREKL-ELV--SRVGISPACSVVQCAWHPKLNQ 454 (616)
Q Consensus 385 ~~~~~~~~v~~v~fs-------pdg~~l~~gs~~~~~~~~dg~i~iwd~~~~-~~~--~~~~~~~~~~v~~~~~~p~~~~ 454 (616)
. .....+..++|. .+|.++++.. ..+.|..+++... +.. ..+.......+..+++.|++..
T Consensus 255 ~--~~~~ap~G~~~y~g~~fp~~~G~l~v~~~-------~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~~~pDG~l 325 (354)
T 3a9g_A 255 G--SETWAPSGASFVHGDMFPGLRGWLLIACL-------RGSMLAAVNFGDNMEVRKISTFFKNVFGRLRDVVIDDDGGI 325 (354)
T ss_dssp T--TCCCCEEEEEECCSSSCGGGTTEEEEEET-------TTTEEEEEEECGGGCEEEEEEECTTTSCCEEEEEECTTSCE
T ss_pred C--CCCcCCcceEEECCCCCcccCCcEEEEEc-------CCCEEEEEEECCCCcccceeeeccCCCCCeeEEEECCCCcE
Confidence 1 112346778883 4666665554 5677888887643 322 1221112346777888887743
Q ss_pred EEE
Q 048012 455 IFA 457 (616)
Q Consensus 455 l~~ 457 (616)
+++
T Consensus 326 yv~ 328 (354)
T 3a9g_A 326 LIS 328 (354)
T ss_dssp EEE
T ss_pred EEE
Confidence 333
No 301
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=97.68 E-value=0.00014 Score=80.29 Aligned_cols=184 Identities=9% Similarity=-0.034 Sum_probs=105.5
Q ss_pred eCCCeEEEEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEEEECCCc---cccceEEe
Q 048012 215 TGSAQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEF---KSQKQVIK 291 (616)
Q Consensus 215 s~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~---~~~~~~~~ 291 (616)
+....|++.++.+.....+ ......+..++|++.+..++++-...+.|+.+++... .....+..
T Consensus 383 ~~~~~I~~id~~~~~~~~~-------------~~~~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~ 449 (699)
T 1n7d_A 383 TNRHEVRKMTLDRSEYTSL-------------IPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVIS 449 (699)
T ss_dssp CCTTC-CEECTTSCCEECC-------------SCCCTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCC
T ss_pred cCccceEEEeCCCCcceee-------------eccCcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEe
Confidence 3445677777765543211 1122345678899876555555556788999998751 11111111
Q ss_pred eeccCCCCccEEEEEECCC-CCeEEEEeCCCcEEEEeCCCCCCCCCceeeecCCCCCeEEEEEcCCCCeEEEEec-C-Cc
Q 048012 292 PKLARPGRVAVTTCAWDCD-GKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHSDDITALKFSSDGRILLSRSF-D-GS 368 (616)
Q Consensus 292 ~~~~~~~~~~v~~~~~sp~-g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~-D-g~ 368 (616)
........+++.+. ++++++-...+.|.++++... .....+.........|++.|.+.+|+.+.. . +.
T Consensus 450 -----~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~----~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~ 520 (699)
T 1n7d_A 450 -----RDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV----KRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAK 520 (699)
T ss_dssp -----SCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSC----CEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCC
T ss_pred -----CCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCC----ceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCe
Confidence 01113456788854 455555556789999998753 122222222344678999996655554442 2 67
Q ss_pred EEEEeCCCCCCcceEecCCCCCCcceeEEECCCCCEEEEeeccccccCCCceEEEEeCCCC
Q 048012 369 LKVWDLRKMKEPLKVFEDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREKL 429 (616)
Q Consensus 369 v~lwd~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~~ 429 (616)
|..+++.... ...+.. ........|+|+|++..|+.+.. ..+.|.++++...
T Consensus 521 I~~~~~dG~~--~~~l~~-~~l~~PnGlavd~~~~~LY~aD~------~~~~I~~~d~dG~ 572 (699)
T 1n7d_A 521 IKKGGLNGVD--IYSLVT-ENIQWPNGITLDLLSGRLYWVDS------KLHSISSIDVNGG 572 (699)
T ss_dssp EEBCCSSSCC--CCEESC-SSCSSCCCEEECTTTCCEEEEET------TTTEEEEECSSSS
T ss_pred EEEEeCCCCC--eeEEEe-CCCCCccEEEEeccCCEEEEEec------CCCeEEEEccCCC
Confidence 8888776322 222211 12234678999998777766653 6678999998643
No 302
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=97.66 E-value=0.1 Score=56.35 Aligned_cols=283 Identities=14% Similarity=0.023 Sum_probs=152.7
Q ss_pred ecCCcccEEEEEECCCCC-EEEEEEcCCcEEEEeCCCCccccccceecCCCCCCceEEEEecCCCCeEEEEeC--CCeEE
Q 048012 145 LKGHTKIVSALAVDHSGS-RVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSDRFLCVTG--SAQAK 221 (616)
Q Consensus 145 l~~H~~~V~~v~~sp~g~-~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~s~--d~~v~ 221 (616)
+...-.....|++++.+. ++++-...+.|.+.++.+... ..+..........|++.|.+.+|+.... .+.|.
T Consensus 79 ~~~~~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~-----~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~ 153 (619)
T 3s94_A 79 VVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLR-----KVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIE 153 (619)
T ss_dssp ECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-----EEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEE
T ss_pred EeCCCCCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCE-----EEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEE
Confidence 333335688999998655 445555678999999876421 1111123344778999998666665553 35777
Q ss_pred EEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEEEECCCccccceEEeeeccCCCCcc
Q 048012 222 IYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPGRVA 301 (616)
Q Consensus 222 vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~ 301 (616)
..++++.....+. .......+.+++.++++.++++-...+.|...|+..... ..+.... .. .
T Consensus 154 r~~~dG~~~~~l~------------~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~-~~~~~~~--~~---~ 215 (619)
T 3s94_A 154 RAGMDGSSRFIII------------NSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNR-QAVVKGS--LP---H 215 (619)
T ss_dssp EEETTSCSCEEEE------------CSSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEE-C--------------
T ss_pred EEECCCCceEEEE------------eCCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCcc-EEEEeCC--CC---C
Confidence 7777765543321 112345688999987766666666678899999865322 2222111 11 2
Q ss_pred EEEEEECCCCCeEEEEeCCCcEEEEeCCCCCCCCC-------c--eeeec------CC------CCCeEEEE--------
Q 048012 302 VTTCAWDCDGKCIAGGIGDGSIQVWNLKPGWGSRP-------D--IHVEK------GH------SDDITALK-------- 352 (616)
Q Consensus 302 v~~~~~sp~g~~l~~g~~dg~I~iwd~~~~~~~~~-------~--~~~~~------~h------~~~V~~l~-------- 352 (616)
...+++..+ .++++-...+.|...|..++..... + +..+. +. .+....++
T Consensus 216 P~gi~~~~~-~ly~td~~~~~V~~~d~~tg~~~~~i~~~~~~p~~i~v~~~~~qp~~~n~C~~~ng~Cs~lCl~~~~~~~ 294 (619)
T 3s94_A 216 PFALTLFED-ILYWTDWSTHSILACNKYTGEGLREIHSDIFSPMDIHAFSQQRQPNATNPCGIDNGGCSHLCLMSPVKPF 294 (619)
T ss_dssp CCCEEESSS-EEEEECTTTCSEEEEESSSCCCCEECCSCCCCCSEEEECCGGGSCCCCCTTTTTGGGCSSEEEECSSTTS
T ss_pred ceEEEEeCC-EEEEecCCCCEEEEEECCCCcccEEEecCCCCCcEEEEEccccCCCccccccCCCCcccceEECCCCCCC
Confidence 245566554 4555555677888888766521100 0 00000 00 00011111
Q ss_pred ---EcCCCC---------------eEEEEecCCcEEEEeCCCCCCcceEecCCCCCCcceeEEECCCCCEEEEeeccccc
Q 048012 353 ---FSSDGR---------------ILLSRSFDGSLKVWDLRKMKEPLKVFEDLPNNYAQTNVAFSPDEQLFLTGTSVERE 414 (616)
Q Consensus 353 ---~spdg~---------------~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~gs~~~~~ 414 (616)
.+|.|- +|+.+ ..+.|+..++.........+ .......+..++|++.+..|+.+..
T Consensus 295 ~~C~C~~g~~l~~d~~~C~~~~~~~Ll~~-~~~~i~~i~l~~~~~~~~~~-~~~~l~~~~~ld~d~~~~~ly~sD~---- 368 (619)
T 3s94_A 295 YQCACPTGVKLLENGKTCKDGATELLLLA-RRTDLRRISLDTPDFTDIVL-QLEDIRHAIAIDYDPVEGYIYWTDD---- 368 (619)
T ss_dssp EEEECCTTCCBCTTSSCBCSSCSEEEEEE-ESSCEEEEESSSTTCCCEEC-CCSCCSSEEEEEEETTTTEEEEEET----
T ss_pred ceEeCCchheecccCcccCCCCceEEEEE-cccceEEEecCCCccceeEE-eccccCccEEEEEEcCCCeEEEEeC----
Confidence 122211 22222 24456666766433211111 1122234778999987666666552
Q ss_pred cCCCceEEEEeCCCCceEEEEecCCCCCeEEEEEcCCCCcEEEEec
Q 048012 415 STTGGLLCFYDREKLELVSRVGISPACSVVQCAWHPKLNQIFATAG 460 (616)
Q Consensus 415 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~ 460 (616)
..+.|+.+++........+. ..-.....++++..++.|+.+..
T Consensus 369 --~~~~I~r~~~~g~~~~~v~~-~~~~~p~GlAvD~~~~~lY~tD~ 411 (619)
T 3s94_A 369 --EVRAIRRSFIDGSGSQFVVT-AQIAHPDGIAVDWVARNLYWTDT 411 (619)
T ss_dssp --TTTEEEEEETTSCSCEEEEC-SSCSCCCEEEEETTTTEEEEEET
T ss_pred --CCCeEEEEEcCCCccEEEEE-CCCCCcCceEEecccCcEEEEeC
Confidence 57889999987644333332 22245678888876677776654
No 303
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=97.65 E-value=0.11 Score=56.33 Aligned_cols=228 Identities=8% Similarity=-0.025 Sum_probs=139.1
Q ss_pred cCCcEEEEeCCCCccccccceecCC-CCCCceEEEEecCCCCeEEEEe-CCCeEEEEECCCCeeeeEeeCceeEeecccC
Q 048012 169 YDYTVRMYDFQGMNSRLQSFRQLEP-SEGHQVRNLSWSPTSDRFLCVT-GSAQAKIYDRDGLTLGEFVKGDMYIRDLKNT 246 (616)
Q Consensus 169 ~Dg~i~iwd~~~~~~~~~~~~~~~~-~~~~~v~~l~~sp~g~~l~~~s-~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~ 246 (616)
....|+..++.+... ....+ ..-..+..|+|++....|+.+. .++.|..+++++.......
T Consensus 13 ~~~~I~~i~l~~~~~-----~~~~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~------------ 75 (628)
T 4a0p_A 13 RRADIRRISLETNNN-----NVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVV------------ 75 (628)
T ss_dssp ETTEEEEEESSCTTC-----EEECCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEE------------
T ss_pred eCCcEEEEECCCCCc-----ceEEEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEE------------
Confidence 456788888875321 11111 1223588999999777766554 5688999998876433221
Q ss_pred CCcccceEEEEEcCCCCCEEEEEeCCCCEEEEECCCccccceEEeeeccCCCCccEEEEEECCCCCeEEEEe--CCCcEE
Q 048012 247 KGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWDCDGKCIAGGI--GDGSIQ 324 (616)
Q Consensus 247 ~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~g~--~dg~I~ 324 (616)
.........+++.+.+++++++-...+.|.+.++.... ...+... .-.....++++|....|+... ..+.|.
T Consensus 76 ~~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~-~~~l~~~-----~l~~P~~iavdp~~G~lY~tD~g~~~~I~ 149 (628)
T 4a0p_A 76 EFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQH-RQVLVWK-----DLDSPRALALDPAEGFMYWTEWGGKPKID 149 (628)
T ss_dssp CSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSTT-CEEEECS-----SCCCEEEEEEETTTTEEEEEECSSSCEEE
T ss_pred eCCCCCcceEEEEeCCCEEEEEECCCCEEEEEecCCCc-EEEEEeC-----CCCCcccEEEccCCCeEEEeCCCCCCEEE
Confidence 11123456777877666677777777889999986432 2222211 112568999998655555554 256788
Q ss_pred EEeCCCCCCCCCceeeecCCCCCeEEEEEcCCCCeEEEEe-cCCcEEEEeCCCCCCcceEecCCCCCCcceeEEECCCCC
Q 048012 325 VWNLKPGWGSRPDIHVEKGHSDDITALKFSSDGRILLSRS-FDGSLKVWDLRKMKEPLKVFEDLPNNYAQTNVAFSPDEQ 403 (616)
Q Consensus 325 iwd~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s-~Dg~v~lwd~~~~~~~~~~~~~~~~~~~v~~v~fspdg~ 403 (616)
..++... ....+...-.....|++++++..|+.+. ..+.|..+|+..... +.+... ......+++.. +
T Consensus 150 r~~~dG~-----~~~~l~~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~--~v~~~~--l~~P~glav~~-~- 218 (628)
T 4a0p_A 150 RAAMDGS-----ERTTLVPNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR--EVIADD--LPHPFGLTQYQ-D- 218 (628)
T ss_dssp EEETTSC-----SCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC--EEEEEC--CSCEEEEEEET-T-
T ss_pred EEeCCCC-----ceEEEECCCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCce--EEeecc--CCCceEEEEEC-C-
Confidence 8888753 1222222445678999999766666554 567899999875333 333221 12255777754 3
Q ss_pred EEEEeeccccccCCCceEEEEeCCCCceEEEEe
Q 048012 404 LFLTGTSVERESTTGGLLCFYDREKLELVSRVG 436 (616)
Q Consensus 404 ~l~~gs~~~~~~~~dg~i~iwd~~~~~~~~~~~ 436 (616)
.|+.... ..+.|...|..+++....+.
T Consensus 219 ~ly~tD~------~~~~I~~~dk~tg~~~~~l~ 245 (628)
T 4a0p_A 219 YIYWTDW------SRRSIERANKTSGQNRTIIQ 245 (628)
T ss_dssp EEEEEET------TTTEEEEEETTTCCSCEEEE
T ss_pred EEEEecC------CCCEEEEEECCCCCceEEEe
Confidence 4444432 67889999988876655553
No 304
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=97.58 E-value=0.014 Score=58.08 Aligned_cols=234 Identities=13% Similarity=0.090 Sum_probs=125.0
Q ss_pred eEEEEecCCCCeEEEE------------eCCCeEEEEECCCC--eeeeEeeCceeEeecccCCCcccceEEEEEcC--CC
Q 048012 199 VRNLSWSPTSDRFLCV------------TGSAQAKIYDRDGL--TLGEFVKGDMYIRDLKNTKGHICGLTCGEWHP--KT 262 (616)
Q Consensus 199 v~~l~~sp~g~~l~~~------------s~d~~v~vwd~~~~--~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p--~~ 262 (616)
.-.+...++|..++++ ..+|.|.++|.++. ...++.. ... ......-....+.+.+ ++
T Consensus 52 ~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~-----~g~-~~~~~~f~PhGi~~~~d~dg 125 (355)
T 3sre_A 52 SEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEI-----IGN-TLDISSFNPHGISTFIDDDN 125 (355)
T ss_dssp CCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEE-----ECS-SCCGGGCCEEEEEEEECTTC
T ss_pred cceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEc-----cCC-CCCcCceeeeeeEEEECCCC
Confidence 4556677776544443 15889999998732 2221110 000 0111222345555544 33
Q ss_pred CCEEEEE-eC--CCCEEEEECCCccccceEEeeeccCCCCccEEEEEECCCCCeEEEEeC-----------------CCc
Q 048012 263 KETILTS-SE--DGSLRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWDCDGKCIAGGIG-----------------DGS 322 (616)
Q Consensus 263 ~~~l~s~-s~--Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~g~~-----------------dg~ 322 (616)
..+|+.+ .. +.+|.+|++............... ..-...+.+++.++|.+.++... .|.
T Consensus 126 ~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g-~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~ 204 (355)
T 3sre_A 126 TVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRH-KLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSF 204 (355)
T ss_dssp CEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECC-TTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEE
T ss_pred cEEEEEEECCCCCCeEEEEEEECCCCEEEEEecccc-CCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccE
Confidence 3234444 33 467888887654333333322222 22235889999999987777541 245
Q ss_pred EEEEeCCCCCCCCCceeeecCCCCCeEEEEEcCCCCeEEEEe-cCCcEEEEeCCCCCCc--ceEecCCCCCCcceeEEEC
Q 048012 323 IQVWNLKPGWGSRPDIHVEKGHSDDITALKFSSDGRILLSRS-FDGSLKVWDLRKMKEP--LKVFEDLPNNYAQTNVAFS 399 (616)
Q Consensus 323 I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s-~Dg~v~lwd~~~~~~~--~~~~~~~~~~~~v~~v~fs 399 (616)
|+.||.. .. ..+...-..-+.|+|+||++.|+.+. ..+.|..|++...... .+.+ .. ....-.+++.
T Consensus 205 vyr~d~~------~~-~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~-~~--~g~PDGi~vD 274 (355)
T 3sre_A 205 VTYYSPN------DV-RVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVL-SF--DTLVDNISVD 274 (355)
T ss_dssp EEEECTT------CC-EEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEE-EC--SSEEEEEEEC
T ss_pred EEEEECC------eE-EEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEE-eC--CCCCceEEEe
Confidence 6556542 11 12222224568999999998777665 5688999998743221 1233 22 2446789999
Q ss_pred C-CCCEEEEeeccccccCCCceEEEEeCC--CCceEEEEec--CCCCCeEEEEEcCCCCcEE
Q 048012 400 P-DEQLFLTGTSVERESTTGGLLCFYDRE--KLELVSRVGI--SPACSVVQCAWHPKLNQIF 456 (616)
Q Consensus 400 p-dg~~l~~gs~~~~~~~~dg~i~iwd~~--~~~~~~~~~~--~~~~~v~~~~~~p~~~~l~ 456 (616)
+ +|.+.+++.- ..+.|..|+.. .+..+.++.. .....|. ..|..+|..|-
T Consensus 275 ~e~G~lwva~~~------~g~~v~~~~P~~~~~s~v~rI~~~~~~~~~v~-~v~~ddG~~l~ 329 (355)
T 3sre_A 275 PVTGDLWVGCHP------NGMRIFFYDAENPPGSEVLRIQDILSEEPKVT-VVYAENGTVLQ 329 (355)
T ss_dssp TTTCCEEEEEES------CHHHHHSCCTTSCCCEEEEEEECTTSSSCEEE-EEEEECSSSCC
T ss_pred CCCCcEEEEecC------CceEEEEECCCCCCCCEEEEEEccCCCCcEEE-EEEEcCCCEEE
Confidence 9 5998886641 22345455543 2455555542 1123333 33555666543
No 305
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=97.57 E-value=0.012 Score=57.92 Aligned_cols=209 Identities=12% Similarity=0.169 Sum_probs=118.9
Q ss_pred CCeEEEEeCCCeEEEEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcC----CCCC--E-EEEEeC--CCCEEEE
Q 048012 208 SDRFLCVTGSAQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHP----KTKE--T-ILTSSE--DGSLRIW 278 (616)
Q Consensus 208 g~~l~~~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p----~~~~--~-l~s~s~--Dg~v~iw 278 (616)
..+++.....+-+.|||+.+..+..+.. ..++.+..-| .++. + +++.-. +++|++|
T Consensus 40 ~s~ii~t~k~~gL~Vydl~G~~l~~~~~---------------g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf 104 (355)
T 3amr_A 40 NSKLITTNKKSGLVVYSLDGKMLHSYNT---------------GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIY 104 (355)
T ss_dssp GCEEEEEETTTEEEEEETTSCEEEEECC---------------SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEE
T ss_pred ccEEEEEcCCCCEEEEcCCCcEEEEccC---------------CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEE
Confidence 3455656667899999998777644321 2233333322 1211 2 333333 5789999
Q ss_pred ECCC-ccccceEEeee-ccCCCCccEEEEEE--CCC-CC-eEEEEeCCCcEEEEeCCC---CCCCCCceeeecCCCCCeE
Q 048012 279 DVNE-FKSQKQVIKPK-LARPGRVAVTTCAW--DCD-GK-CIAGGIGDGSIQVWNLKP---GWGSRPDIHVEKGHSDDIT 349 (616)
Q Consensus 279 d~~~-~~~~~~~~~~~-~~~~~~~~v~~~~~--sp~-g~-~l~~g~~dg~I~iwd~~~---~~~~~~~~~~~~~h~~~V~ 349 (616)
++.. ......+.... ........+..+|+ ++. +. ++++...+|.+..|++.. +....+.+..+.. .+.+-
T Consensus 105 ~iDp~~~~l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l-gsq~E 183 (355)
T 3amr_A 105 AIDGKNGTLQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKM-NSQTE 183 (355)
T ss_dssp EECTTTCCEEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEEC-SSCEE
T ss_pred EECCCCCceeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecC-CCCcc
Confidence 7742 11222221100 00001024555666 774 44 688888899999998842 2112233444443 35688
Q ss_pred EEEEcCCCCeEEEEecCCcEEEEeCCCCC----CcceEecCCCCCCcceeEEE--CCCCC-EEEEeeccccccCCCceEE
Q 048012 350 ALKFSSDGRILLSRSFDGSLKVWDLRKMK----EPLKVFEDLPNNYAQTNVAF--SPDEQ-LFLTGTSVERESTTGGLLC 422 (616)
Q Consensus 350 ~l~~spdg~~l~s~s~Dg~v~lwd~~~~~----~~~~~~~~~~~~~~v~~v~f--spdg~-~l~~gs~~~~~~~~dg~i~ 422 (616)
.+...+....|+.+-.+.-|..++.+-.. ..+..+..-.....+..|++ .++++ ||++.+. .++.+.
T Consensus 184 gcvvDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQ------G~~s~~ 257 (355)
T 3amr_A 184 GMAADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQ------GNSSYA 257 (355)
T ss_dssp EEEEETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEG------GGTEEE
T ss_pred eEEEcCCCCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcC------CCCEEE
Confidence 89999888899999988766666654211 12222221111124677777 56666 6777663 567899
Q ss_pred EEeCC-CCceEEEEecC
Q 048012 423 FYDRE-KLELVSRVGIS 438 (616)
Q Consensus 423 iwd~~-~~~~~~~~~~~ 438 (616)
+||.. +.+.+..+.+.
T Consensus 258 Vydr~~~~~~vg~f~Ig 274 (355)
T 3amr_A 258 IYDRQGKNKYVADFRIT 274 (355)
T ss_dssp EEESSTTCCEEEEEEEC
T ss_pred EEECCCCCcEEEEEEec
Confidence 99996 77777777653
No 306
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=97.48 E-value=0.023 Score=61.47 Aligned_cols=226 Identities=9% Similarity=0.029 Sum_probs=124.2
Q ss_pred EEeCCCeEEEEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEEEECCCccccceEEee
Q 048012 213 CVTGSAQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKP 292 (616)
Q Consensus 213 ~~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~ 292 (616)
.-.....|++.++++.... .............++|++.++.++++-...+.|..+++........+..
T Consensus 13 ~~~~~~~I~~i~~~~~~~~-----------~~~~~~~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~- 80 (619)
T 3s94_A 13 LYANRRDLRLVDATNGKEN-----------ATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVV- 80 (619)
T ss_dssp EEECSSBEEEECCC--------------------CBCCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEEC-
T ss_pred EEeccccEEEEeCCCCcce-----------EEEEEcCCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEe-
Confidence 3455677888888754210 1112223345788999997765666656678898898865421122221
Q ss_pred eccCCCCccEEEEEECCCCC-eEEEEeCCCcEEEEeCCCCCCCCCceeeecCCCCCeEEEEEcCCCCeEEEEec--CCcE
Q 048012 293 KLARPGRVAVTTCAWDCDGK-CIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHSDDITALKFSSDGRILLSRSF--DGSL 369 (616)
Q Consensus 293 ~~~~~~~~~v~~~~~sp~g~-~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~--Dg~v 369 (616)
.+-.....+++++.++ ++++-...+.|.+.++... ...............|++.|.+.+|+.... .+.|
T Consensus 81 ----~~~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~----~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I 152 (619)
T 3s94_A 81 ----SGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGS----LRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKI 152 (619)
T ss_dssp ----SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC----SCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEE
T ss_pred ----CCCCCcCeEEEEecCCEEEEEeCCCCEEEEEECCCC----CEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEE
Confidence 1112578899998555 5555556789999998764 121222233445778999997555555543 3566
Q ss_pred EEEeCCCCCCcceEecCCCCCCcceeEEECCCCCEEEEeeccccccCCCceEEEEeCCCCceEEEEecCCCCCeEEEEEc
Q 048012 370 KVWDLRKMKEPLKVFEDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREKLELVSRVGISPACSVVQCAWH 449 (616)
Q Consensus 370 ~lwd~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~ 449 (616)
...++.. ......... .......|++++++..|+.+.. ..+.|..+|+........+.. .......+++.
T Consensus 153 ~r~~~dG-~~~~~l~~~--~~~~P~Glald~~~~~LY~aD~------~~~~I~~~~~dG~~~~~~~~~-~~~~P~gi~~~ 222 (619)
T 3s94_A 153 ERAGMDG-SSRFIIINS--EIYWPNGLTLDYEEQKLYWADA------KLNFIHKSNLDGTNRQAVVKG-SLPHPFALTLF 222 (619)
T ss_dssp EEEETTS-CSCEEEECS--SCSSEEEEEEETTTTEEEEEET------TTCCEEEESSSCCEEC----------CCCEEES
T ss_pred EEEECCC-CceEEEEeC--CCCCCcEEEEEccCCEEEEEeC------CCCeEEEecCCCCccEEEEeC-CCCCceEEEEe
Confidence 6666653 222222221 2344788999998887777763 567899999865433222210 11223455665
Q ss_pred CCCCcEEEEeccCCCCceEEEecc
Q 048012 450 PKLNQIFATAGDKSQGGTHILYDP 473 (616)
Q Consensus 450 p~~~~l~~~~~d~~~~~~~~v~~~ 473 (616)
.+ .|+.+... .+.+...+.
T Consensus 223 ~~--~ly~td~~---~~~V~~~d~ 241 (619)
T 3s94_A 223 ED--ILYWTDWS---THSILACNK 241 (619)
T ss_dssp SS--EEEEECTT---TCSEEEEES
T ss_pred CC--EEEEecCC---CCEEEEEEC
Confidence 44 56665542 344444443
No 307
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=97.48 E-value=0.073 Score=53.09 Aligned_cols=247 Identities=13% Similarity=0.060 Sum_probs=123.2
Q ss_pred cccEEEEEECCCCCEEEEEEcCCcEEEEeCCCCcc-ccccceecCCCCCCceEEEEecCC---CCeEEEEe-C-------
Q 048012 149 TKIVSALAVDHSGSRVLSGSYDYTVRMYDFQGMNS-RLQSFRQLEPSEGHQVRNLSWSPT---SDRFLCVT-G------- 216 (616)
Q Consensus 149 ~~~V~~v~~sp~g~~lasgs~Dg~i~iwd~~~~~~-~~~~~~~~~~~~~~~v~~l~~sp~---g~~l~~~s-~------- 216 (616)
-.....|+|.|+|++|+.+...|.|++++..+... .+..+..+..........|+|+|+ +.+|.++. .
T Consensus 17 l~~P~~i~~~pdG~~l~V~e~~G~i~~~~~~g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~ 96 (353)
T 2g8s_A 17 LDHPWALAFLPDNHGMLITLRGGELRHWQAGKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKA 96 (353)
T ss_dssp ESSEEEEEECSTTCCEEEEETTTEEEEEETTTEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCE
T ss_pred CCCcEEEEEcCCCCEEEEEeCCceEEEEeCCCceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCc
Confidence 34568999999998344556789999998543211 111111111122345789999996 45554443 2
Q ss_pred CCeEEEEECCCC--eeeeEeeCceeEeeccc--CCCcccceEEEEEcCCCCCEEEEEeCC-------------CCEEEEE
Q 048012 217 SAQAKIYDRDGL--TLGEFVKGDMYIRDLKN--TKGHICGLTCGEWHPKTKETILTSSED-------------GSLRIWD 279 (616)
Q Consensus 217 d~~v~vwd~~~~--~~~~~~~~~~~~~~~~~--~~~h~~~v~~~~~~p~~~~~l~s~s~D-------------g~v~iwd 279 (616)
...|..|+++.. .+... ...+..+.. ...|. ...+.|.|++ .++++.+.. |.|.-+|
T Consensus 97 ~~~v~r~~~~~~~~~~~~~---~~i~~~~p~~~~~~h~--~~~l~~~pdG-~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~ 170 (353)
T 2g8s_A 97 GTAVGYGRLSDDLSKVTDF---RTVFRQMPKLSTGNHF--GGRLVFDGKG-YLFIALGENNQRPTAQDLDKLQGKLVRLT 170 (353)
T ss_dssp EEEEEEEEECTTSSBEEEE---EEEEECSSCCBSSSCC--CCCEEECSSS-EEEEEECCTTCGGGGGCTTSCTTEEEEEE
T ss_pred eeEEEEEEECCCCCCCCce---EEEEEECCCCCCCccc--CccEEECCCC-cEEEEECCCCCCCccCCCCCCCeEEEEEC
Confidence 234555665432 22111 001111111 12232 3579999988 455554332 3455556
Q ss_pred CCCccc-----------cceEEeeeccCCCCccEEEEEECC-CCCeEEEEeC-CCcEEEEeCCCCCC-------------
Q 048012 280 VNEFKS-----------QKQVIKPKLARPGRVAVTTCAWDC-DGKCIAGGIG-DGSIQVWNLKPGWG------------- 333 (616)
Q Consensus 280 ~~~~~~-----------~~~~~~~~~~~~~~~~v~~~~~sp-~g~~l~~g~~-dg~I~iwd~~~~~~------------- 333 (616)
....-. ...+.. .+++ ....++|++ +|+++++-.. ++.=.|.-+..+..
T Consensus 171 ~dG~~p~~npf~~~~~~~~~i~a----~G~r-np~gl~~d~~~g~l~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~ 245 (353)
T 2g8s_A 171 DQGEIPDDNPFIKESGVRAEIWS----YGIR-NPQGMAMNPWSNALWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYS 245 (353)
T ss_dssp TTSCCCTTCTTTTSTTSCTTEEE----ECCS-EEEEEEEETTTTEEEEEEECSBSCEEEECCCTTCBCCTTTBCSSBCTT
T ss_pred CCCCCCCCCCCcCCCCCCccEEE----EcCc-CccceEEECCCCCEEEEecCCCCCcEEeEeccCCcCCCCCccCCCCCC
Confidence 542100 011111 1222 478899999 5655444321 11122222222100
Q ss_pred --------------CCCceeeecCCCCCeEEEEEcC-------CCCeEEEEecCCcEEEEeCCCCCCcceEecCC-CCCC
Q 048012 334 --------------SRPDIHVEKGHSDDITALKFSS-------DGRILLSRSFDGSLKVWDLRKMKEPLKVFEDL-PNNY 391 (616)
Q Consensus 334 --------------~~~~~~~~~~h~~~V~~l~~sp-------dg~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~-~~~~ 391 (616)
....+..+..| ..+..++|.. +|.++++.-..+.|...++... ......... ....
T Consensus 246 ~~~~~~~~~~~~~~~~~P~~~~~~~-~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~-~~~~~~~~~~~~~~ 323 (353)
T 2g8s_A 246 GFKIPEAKGEIVAGTEQPVFYWKDS-PAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGD-KVTEDGRILTDRGQ 323 (353)
T ss_dssp SSCCTTCCBSSCTTSCCCSEEESSC-CCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETT-EEEEEEEESGGGCC
T ss_pred CCccCcccCCCCCCccCCeEEeCCC-cCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCC-eEeeeEEcccCCCC
Confidence 00111122222 3577888864 5777777667788888887642 222111111 1123
Q ss_pred cceeEEECCCCCEEEEe
Q 048012 392 AQTNVAFSPDEQLFLTG 408 (616)
Q Consensus 392 ~v~~v~fspdg~~l~~g 408 (616)
.+..+++.|||.++++.
T Consensus 324 rp~~v~~~pdG~lyv~t 340 (353)
T 2g8s_A 324 RIRDVRTGPDGYLYVLT 340 (353)
T ss_dssp CEEEEEECTTSCEEEEE
T ss_pred ceeEEEECCCCcEEEEE
Confidence 58899999999876653
No 308
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=97.48 E-value=0.073 Score=57.59 Aligned_cols=221 Identities=10% Similarity=-0.046 Sum_probs=134.7
Q ss_pred EeCCCeEEEEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEEEECCCccccceEEeee
Q 048012 214 VTGSAQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKPK 293 (616)
Q Consensus 214 ~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~ 293 (616)
.+....|+..++++...... ..+ .....+..++|++.++.++++-..++.|+.+++.... ...+...
T Consensus 11 ~s~~~~I~~i~l~~~~~~~~----------~~~-~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~-~~~v~~~- 77 (628)
T 4a0p_A 11 FSRRADIRRISLETNNNNVA----------IPL-TGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSA-LEHVVEF- 77 (628)
T ss_dssp EEETTEEEEEESSCTTCEEE----------CCC-CSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-CEEEECS-
T ss_pred EEeCCcEEEEECCCCCcceE----------EEc-CCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCC-cEEEEeC-
Confidence 34667889999886542111 111 2234678999999876677777778899999986532 2222211
Q ss_pred ccCCCCccEEEEEECCCCC-eEEEEeCCCcEEEEeCCCCCCCCCceeeecCCCCCeEEEEEcCCCCeEEEEe--cCCcEE
Q 048012 294 LARPGRVAVTTCAWDCDGK-CIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHSDDITALKFSSDGRILLSRS--FDGSLK 370 (616)
Q Consensus 294 ~~~~~~~~v~~~~~sp~g~-~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s--~Dg~v~ 370 (616)
+......+++++.+. ++++-...+.|.+.++... .........-.....|++.|...+|+... ..+.|.
T Consensus 78 ----g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~----~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~ 149 (628)
T 4a0p_A 78 ----GLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQ----HRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKID 149 (628)
T ss_dssp ----SCSCCCEEEEETTTTEEEEEETTTTEEEEEETTST----TCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEE
T ss_pred ----CCCCcceEEEEeCCCEEEEEECCCCEEEEEecCCC----cEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEE
Confidence 111456788876554 5555556788999998754 11112223334578999998555555544 256777
Q ss_pred EEeCCCCCCcceEecCCCCCCcceeEEECCCCCEEEEeeccccccCCCceEEEEeCCCCceEEEEecCCCCCeEEEEEcC
Q 048012 371 VWDLRKMKEPLKVFEDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREKLELVSRVGISPACSVVQCAWHP 450 (616)
Q Consensus 371 lwd~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p 450 (616)
..++.. ........ .......|++++++..|+.+.. ..+.|..+|+..... ..+. ........+++..
T Consensus 150 r~~~dG-~~~~~l~~---~~~~P~GlalD~~~~~LY~aD~------~~~~I~~~d~dG~~~-~v~~-~~l~~P~glav~~ 217 (628)
T 4a0p_A 150 RAAMDG-SERTTLVP---NVGRANGLTIDYAKRRLYWTDL------DTNLIESSNMLGLNR-EVIA-DDLPHPFGLTQYQ 217 (628)
T ss_dssp EEETTS-CSCEEEEC---SCSSEEEEEEETTTTEEEEEET------TTTEEEEEETTSCSC-EEEE-ECCSCEEEEEEET
T ss_pred EEeCCC-CceEEEEC---CCCCcceEEEccccCEEEEEEC------CCCEEEEEcCCCCce-EEee-ccCCCceEEEEEC
Confidence 777763 33233332 2345789999998888887764 678899999876544 2232 2233456777764
Q ss_pred CCCcEEEEeccCCCCceEEEec
Q 048012 451 KLNQIFATAGDKSQGGTHILYD 472 (616)
Q Consensus 451 ~~~~l~~~~~d~~~~~~~~v~~ 472 (616)
..|+.+... .+.+...+
T Consensus 218 --~~ly~tD~~---~~~I~~~d 234 (628)
T 4a0p_A 218 --DYIYWTDWS---RRSIERAN 234 (628)
T ss_dssp --TEEEEEETT---TTEEEEEE
T ss_pred --CEEEEecCC---CCEEEEEE
Confidence 466666653 44454444
No 309
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=97.45 E-value=0.015 Score=57.09 Aligned_cols=186 Identities=11% Similarity=0.214 Sum_probs=113.9
Q ss_pred CEEEEEeCCCCEEEEECCCccccceEEeeeccCCCCccEEEEEECC----CCC---eEEEEeC---CCcEEEEeCCCCCC
Q 048012 264 ETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWDC----DGK---CIAGGIG---DGSIQVWNLKPGWG 333 (616)
Q Consensus 264 ~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp----~g~---~l~~g~~---dg~I~iwd~~~~~~ 333 (616)
.+++.....+-|.+||+ +++.+..+.. + .++.+..-| .|+ ++++... +++|++|++....
T Consensus 41 s~ii~t~k~~gL~Vydl-~G~~l~~~~~------g--~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~- 110 (355)
T 3amr_A 41 SKLITTNKKSGLVVYSL-DGKMLHSYNT------G--KLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKN- 110 (355)
T ss_dssp CEEEEEETTTEEEEEET-TSCEEEEECC------S--CEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTT-
T ss_pred cEEEEEcCCCCEEEEcC-CCcEEEEccC------C--CcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCC-
Confidence 46777777788999999 5554443311 1 344444433 233 2333333 5789999774221
Q ss_pred CCCceeeecC------CC-CCeEEEEE--cCC-CC-eEEEEecCCcEEEEeCCC---CC---CcceEecCCCCCCcceeE
Q 048012 334 SRPDIHVEKG------HS-DDITALKF--SSD-GR-ILLSRSFDGSLKVWDLRK---MK---EPLKVFEDLPNNYAQTNV 396 (616)
Q Consensus 334 ~~~~~~~~~~------h~-~~V~~l~~--spd-g~-~l~s~s~Dg~v~lwd~~~---~~---~~~~~~~~~~~~~~v~~v 396 (616)
..+..... .. ..+..+++ ++. +. ++++...+|.+..|++.. +. +.++.+. ....+-.|
T Consensus 111 --~~l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~---lgsq~Egc 185 (355)
T 3amr_A 111 --GTLQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFK---MNSQTEGM 185 (355)
T ss_dssp --CCEEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEE---CSSCEEEE
T ss_pred --CceeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEec---CCCCcceE
Confidence 12322211 11 55777888 774 43 677888899999999843 11 2233333 33458889
Q ss_pred EECCCCCEEEEeeccccccCCCceEEEEeCC-----CCceEEEEecCCC-CCeEEEEE--cCCCC-cEEEEeccCCCCce
Q 048012 397 AFSPDEQLFLTGTSVERESTTGGLLCFYDRE-----KLELVSRVGISPA-CSVVQCAW--HPKLN-QIFATAGDKSQGGT 467 (616)
Q Consensus 397 ~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~-----~~~~~~~~~~~~~-~~v~~~~~--~p~~~-~l~~~~~d~~~~~~ 467 (616)
...+...+|+++- .+.-|..|+.. +++.+..+...+- ..+-.|+. .+++. +|++++.. ...
T Consensus 186 vvDd~~g~Lyv~e-------Ed~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG---~~s 255 (355)
T 3amr_A 186 AADDEYGRLYIAE-------EDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQG---NSS 255 (355)
T ss_dssp EEETTTTEEEEEE-------TTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGG---GTE
T ss_pred EEcCCCCeEEEec-------ccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCC---CCE
Confidence 9999999999998 66668888855 3455655532221 35677776 55555 78888853 568
Q ss_pred EEEeccc
Q 048012 468 HILYDPR 474 (616)
Q Consensus 468 ~~v~~~~ 474 (616)
..||+..
T Consensus 256 ~~Vydr~ 262 (355)
T 3amr_A 256 YAIYDRQ 262 (355)
T ss_dssp EEEEESS
T ss_pred EEEEECC
Confidence 8889875
No 310
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=97.39 E-value=0.14 Score=51.45 Aligned_cols=231 Identities=13% Similarity=0.165 Sum_probs=139.8
Q ss_pred CcEEEEeCCCCccccccceecCCCCCCceEEEEecCCCCeEEEEeCCCeEEEEECCCCeeeeEeeCceeEeecccCCCcc
Q 048012 171 YTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSDRFLCVTGSAQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHI 250 (616)
Q Consensus 171 g~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~ 250 (616)
..|.|-|+.......+. .+. .-+.-.+|..+.|+.-. ...+.|+|++....... ..- .
T Consensus 48 ~~vvIiDl~~~~~~~rr--pi~------AdsAIMnP~~~iiALra-g~~lQiFnle~K~klks------------~~~-~ 105 (494)
T 1bpo_A 48 AQVVIIDMNDPSNPIRR--PIS------ADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKA------------HTM-T 105 (494)
T ss_dssp CEEEEEETTSTTSCEEE--ECC------CSEEEECSSSSCEEEEE-TTEEEEEETTTTEEEEE------------EEC-S
T ss_pred CeEEEEECCCCCcceec--ccc------cceeeeCCCCcEEEEec-CCeEEEEchHHhhhhcc------------eec-C
Confidence 36788888764432111 111 23445677777666554 78999999997653211 111 2
Q ss_pred cceEEEEEcCCCCCEEEEEeCCCCEEEEECCCccccceEEeeeccCCCCccEEEEEECCCCCeEEEEe-------CCCcE
Q 048012 251 CGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWDCDGKCIAGGI-------GDGSI 323 (616)
Q Consensus 251 ~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~g~-------~dg~I 323 (616)
..|.--.|-.. +.|+-.+ +..|+-|++........+...+.... ...|..-..+++.++++..+ -.|.+
T Consensus 106 e~VvfWkWis~--~~l~lVT-~taVyHWsi~~~s~P~kvFdR~~~L~-~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~m 181 (494)
T 1bpo_A 106 DDVTFWKWISL--NTVALVT-DNAVYHWSMEGESQPVKMFDRHSSLA-GCQIINYRTDAKQKWLLLTGISAQQNRVVGAM 181 (494)
T ss_dssp SCCCEEEEEET--TEEEEEC-SSEEEEEESSSSCCCEEEEECCGGGT-TCEEEEEEECTTSSEEEEEEEEEETTEEEEEE
T ss_pred CCceEEEecCC--CeEEEEc-CCeeEEecccCCCCchhheecchhcc-cceEEEEEECCCCCeEEEEeecccCCcccceE
Confidence 24555566543 3555544 56799999975333333332222212 34677888899999876443 24789
Q ss_pred EEEeCCCCCCCCCceeeecCCCCCeEEEEEcCCC---CeEEEEec---CCcEEEEeCCCC---CCcc--eEec--CC--C
Q 048012 324 QVWNLKPGWGSRPDIHVEKGHSDDITALKFSSDG---RILLSRSF---DGSLKVWDLRKM---KEPL--KVFE--DL--P 388 (616)
Q Consensus 324 ~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~spdg---~~l~s~s~---Dg~v~lwd~~~~---~~~~--~~~~--~~--~ 388 (616)
.||.... ..-..+.+|......+.+.-+. .+|+.+.. .++++|.++... ..+. +... .. .
T Consensus 182 QLYS~er-----~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~ 256 (494)
T 1bpo_A 182 QLYSVDR-----KVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEA 256 (494)
T ss_dssp EEEESTT-----CCEEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTS
T ss_pred EEeeccc-----cccchheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCccc
Confidence 9999875 4677788887665555443211 23333333 278999998643 1111 1111 00 1
Q ss_pred CCCcceeEEECCCCCEEEEeeccccccCCCceEEEEeCCCCceEEEEecCC
Q 048012 389 NNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREKLELVSRVGISP 439 (616)
Q Consensus 389 ~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~ 439 (616)
...-..++..|+.-..++.-+ .-|.|++||+.++.++..-.++.
T Consensus 257 ~~DFPvamqvs~kygviyviT-------K~G~i~lyDleTgt~i~~nrIs~ 300 (494)
T 1bpo_A 257 QNDFPVAMQISEKHDVVFLIT-------KYGYIHLYDLETGTCIYMNRISG 300 (494)
T ss_dssp TTCCEEEEEEETTTTEEEEEE-------TTSEEEEEETTTCCEEEEEECCS
T ss_pred ccCceeEEEecccCCEEEEEe-------cCceEEEEecccceeeeeecccC
Confidence 123356788899888888888 89999999999999999887653
No 311
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=97.34 E-value=0.02 Score=55.59 Aligned_cols=238 Identities=11% Similarity=0.049 Sum_probs=113.5
Q ss_pred CCCEEEEEE-cC-----CcEEEEeCCCCccccccceecCCCCCCceEEEEecCCCCeEEEEeCC-----CeEEEEECCCC
Q 048012 160 SGSRVLSGS-YD-----YTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSDRFLCVTGS-----AQAKIYDRDGL 228 (616)
Q Consensus 160 ~g~~lasgs-~D-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~s~d-----~~v~vwd~~~~ 228 (616)
++.+++.|+ .+ ..+.+||..+.. ...+..+ +........+. .++..++.|+.+ ..+.+||....
T Consensus 14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~~--W~~~~~~-p~~r~~~~~~~--~~~~l~v~GG~~~~~~~~~~~~~d~~~~ 88 (301)
T 2vpj_A 14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQE--WSFLPSI-TRKRRYVASVS--LHDRIYVIGGYDGRSRLSSVECLDYTAD 88 (301)
T ss_dssp CEEEEEECCEETTTEECCCEEEEETTTTE--EEECCCC-SSCCBSCEEEE--ETTEEEEECCBCSSCBCCCEEEEETTCC
T ss_pred CCEEEEEeCccCCCcceeEEEEEcCCCCe--EEeCCCC-ChhhccccEEE--ECCEEEEEcCCCCCccCceEEEEECCCC
Confidence 345666666 32 368888876532 1111111 11111112222 245555555543 46888998766
Q ss_pred e---eeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCC-----CCEEEEECCCccccceEEeeeccCCCCc
Q 048012 229 T---LGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSED-----GSLRIWDVNEFKSQKQVIKPKLARPGRV 300 (616)
Q Consensus 229 ~---~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~D-----g~v~iwd~~~~~~~~~~~~~~~~~~~~~ 300 (616)
. .... ..+.........+.+ ++ .+++.|+.+ ..+.+||+.+..-.. + .... ..+.
T Consensus 89 ~~~~W~~~----------~~~p~~r~~~~~~~~--~~-~lyv~GG~~~~~~~~~~~~~d~~~~~W~~-~-~~~p--~~r~ 151 (301)
T 2vpj_A 89 EDGVWYSV----------APMNVRRGLAGATTL--GD-MIYVSGGFDGSRRHTSMERYDPNIDQWSM-L-GDMQ--TARE 151 (301)
T ss_dssp TTCCCEEE----------CCCSSCCBSCEEEEE--TT-EEEEECCBCSSCBCCEEEEEETTTTEEEE-E-EECS--SCCB
T ss_pred CCCeeEEC----------CCCCCCccceeEEEE--CC-EEEEEcccCCCcccceEEEEcCCCCeEEE-C-CCCC--CCcc
Confidence 5 3222 111111111122222 23 577777644 358889987644222 1 1111 1111
Q ss_pred cEEEEEECCCCCeEEEEeCC-----CcEEEEeCCCCCCCCCceeeecCCCCCeEEEEEcCCCCeEEEEecC-----CcEE
Q 048012 301 AVTTCAWDCDGKCIAGGIGD-----GSIQVWNLKPGWGSRPDIHVEKGHSDDITALKFSSDGRILLSRSFD-----GSLK 370 (616)
Q Consensus 301 ~v~~~~~sp~g~~l~~g~~d-----g~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~D-----g~v~ 370 (616)
...++.+ ++++++.|+.+ ..+.+||+.+. ....+..+........++.+ ++++++.|+.+ ..|.
T Consensus 152 ~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~--~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~ 225 (301)
T 2vpj_A 152 GAGLVVA--SGVIYCLGGYDGLNILNSVEKYDPHTG--HWTNVTPMATKRSGAGVALL--NDHIYVVGGFDGTAHLSSVE 225 (301)
T ss_dssp SCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTT--EEEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEE
T ss_pred cceEEEE--CCEEEEECCCCCCcccceEEEEeCCCC--cEEeCCCCCcccccceEEEE--CCEEEEEeCCCCCcccceEE
Confidence 2223333 67777777765 45889998765 22222222111112223333 57777888764 4689
Q ss_pred EEeCCCCCCcceEecCCCCC-CcceeEEECCCCCEEEEeeccccccCCCceEEEEeCCCCce
Q 048012 371 VWDLRKMKEPLKVFEDLPNN-YAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREKLEL 431 (616)
Q Consensus 371 lwd~~~~~~~~~~~~~~~~~-~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~~~~ 431 (616)
+||+.+.. ...+...+.. .....+. -++++++.|+.... ..-..|.+||+.+.+-
T Consensus 226 ~yd~~~~~--W~~~~~~p~~r~~~~~~~--~~~~i~v~GG~~~~--~~~~~v~~yd~~~~~W 281 (301)
T 2vpj_A 226 AYNIRTDS--WTTVTSMTTPRCYVGATV--LRGRLYAIAGYDGN--SLLSSIECYDPIIDSW 281 (301)
T ss_dssp EEETTTTE--EEEECCCSSCCBSCEEEE--ETTEEEEECCBCSS--SBEEEEEEEETTTTEE
T ss_pred EEeCCCCc--EEECCCCCCcccceeEEE--ECCEEEEEcCcCCC--cccccEEEEcCCCCeE
Confidence 99987642 2223222221 1122222 26777777762110 0115688899876543
No 312
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=97.27 E-value=0.15 Score=50.38 Aligned_cols=258 Identities=16% Similarity=0.143 Sum_probs=128.3
Q ss_pred ecCCcccEEEEEECCCCCEEEEEEcCCcEEEEeCCCCccc-cccceecCCCCCCceEEEEecCC---CCeEEEE-e--CC
Q 048012 145 LKGHTKIVSALAVDHSGSRVLSGSYDYTVRMYDFQGMNSR-LQSFRQLEPSEGHQVRNLSWSPT---SDRFLCV-T--GS 217 (616)
Q Consensus 145 l~~H~~~V~~v~~sp~g~~lasgs~Dg~i~iwd~~~~~~~-~~~~~~~~~~~~~~v~~l~~sp~---g~~l~~~-s--~d 217 (616)
+...-..-+.|+|.|+|.+|++--..|.|++++..++... ...+..+..........|+|+|+ +.+|.+. + .+
T Consensus 27 va~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~ 106 (347)
T 3das_A 27 VATGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASD 106 (347)
T ss_dssp EECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSS
T ss_pred eecCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCC
Confidence 3344556789999999987776655899999976543211 11111122223456899999995 3444432 2 34
Q ss_pred CeEEEEECCCCee--eeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeC-------------CCCEEEEECCC
Q 048012 218 AQAKIYDRDGLTL--GEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSE-------------DGSLRIWDVNE 282 (616)
Q Consensus 218 ~~v~vwd~~~~~~--~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~-------------Dg~v~iwd~~~ 282 (616)
+.|.-|.+..... .........+..+.....| ....+.|.|++ .++++.+. -|.|.-.+...
T Consensus 107 ~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H--~g~~l~fgpDG-~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG 183 (347)
T 3das_A 107 NRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIH--NGGRIAFGPDK-MLYAGTGESGDTGLSQDRKSLGGKILRMTPDG 183 (347)
T ss_dssp EEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSC--CCCCEEECTTS-CEEEECBCTTCGGGTTCTTCSTTCEEEECTTS
T ss_pred CEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCc--cCccccCCCCC-CEEEEECCCCCCccccCCCCCCCEEEEEeCCC
Confidence 4555565554210 0000011111112222334 34679999988 46666542 24444444432
Q ss_pred ccccc-eEE-eeeccCCCCccEEEEEECCCCCeEEEEe-CCCcEEEEeCCCC----CC----------CCCceeeecCCC
Q 048012 283 FKSQK-QVI-KPKLARPGRVAVTTCAWDCDGKCIAGGI-GDGSIQVWNLKPG----WG----------SRPDIHVEKGHS 345 (616)
Q Consensus 283 ~~~~~-~~~-~~~~~~~~~~~v~~~~~sp~g~~l~~g~-~dg~I~iwd~~~~----~~----------~~~~~~~~~~h~ 345 (616)
.-... .+. ......+++ ....++|+|+|.+.++-. .|+.=.|.-+..+ |. ....+..+..+.
T Consensus 184 ~ip~~nPf~~~~i~a~G~R-Np~Gla~dp~G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~~~~~ 262 (347)
T 3das_A 184 EPAPGNPFPGSPVYSYGHR-NVQGLAWDDKQRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQWSTDE 262 (347)
T ss_dssp SBCTTCSSTTCCEEEBCCS-BCCEEEECTTCCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEECTTT
T ss_pred CccCCCCCCCCeEEeeCCC-CcceEEECCCCCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCcEecCCCC
Confidence 10000 000 000112333 456889999887665542 2332223222222 10 011122222222
Q ss_pred CCeEEEEEcCCCCeEEEEecCCcEEEEeCCCCCC---cceEecCCCCCCcceeEEECCCCCEEEEee
Q 048012 346 DDITALKFSSDGRILLSRSFDGSLKVWDLRKMKE---PLKVFEDLPNNYAQTNVAFSPDEQLFLTGT 409 (616)
Q Consensus 346 ~~V~~l~~spdg~~l~s~s~Dg~v~lwd~~~~~~---~~~~~~~~~~~~~v~~v~fspdg~~l~~gs 409 (616)
.....|+|. +|.+++..-..+.|....+...+. ....+.. ....+..|++.|||.++++..
T Consensus 263 ~ap~G~~~~-~g~~~~~~l~~~~l~~v~~~~~~~~~~~e~~l~~--~~gR~~dv~~~pDG~lyv~td 326 (347)
T 3das_A 263 ASPSGIAYA-EGSVWMAGLRGERLWRIPLKGTAAAADPQAFLEG--EYGRLRTVAPAGGDKLWLVTS 326 (347)
T ss_dssp CCEEEEEEE-TTEEEEEESTTCSEEEEEEETTEESSCCEEESTT--TSSCEEEEEEEETTEEEEEEC
T ss_pred CCCcceEEE-cCceeeccccCCEEEEEEecCCceecceEEeecC--CCCCccEEEECCCCcEEEEEc
Confidence 356778886 466666555556676666654321 1222222 234588999999998777654
No 313
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=97.26 E-value=0.024 Score=56.86 Aligned_cols=163 Identities=15% Similarity=0.141 Sum_probs=98.9
Q ss_pred CCCCEEEEEEcCCcEEEEeCCCCccccccceecCCC---CCCceEEEEecCCCCeEEEEeCCCeEEEEECCCC-eeeeE-
Q 048012 159 HSGSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPS---EGHQVRNLSWSPTSDRFLCVTGSAQAKIYDRDGL-TLGEF- 233 (616)
Q Consensus 159 p~g~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~---~~~~v~~l~~sp~g~~l~~~s~d~~v~vwd~~~~-~~~~~- 233 (616)
.+|..|+.+ .++.||..++.... .++.+... .-..|..+..||+|++|+.. ++..|.|..+... ....-
T Consensus 30 ~n~t~i~~a-~~n~iR~~~i~~~~----~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~-g~~~V~Vv~LP~~~~~~~~~ 103 (452)
T 3pbp_A 30 QNGTRIVFI-QDNIIRWYNVLTDS----LYHSLNFSRHLVLDDTFHVISSTSGDLLCLF-NDNEIFVMEVPWGYSNVEDV 103 (452)
T ss_dssp TTTTEEEEE-ETTEEEEEETTTCS----SCEEEECTTTCCCCTTCEEEECTTSSEEEEE-CSSEEEEEECCTTCSCCCCH
T ss_pred cCCCEEEEE-ECCEEEEEECCCCC----cceEEecCcccccCceeEEEECCCCCEEEEe-cCCeEEEEEecCccccCccc
Confidence 566666665 35788888887532 23332222 23357889999999988865 6678999988722 11110
Q ss_pred ---eeCceeEeecccCC-CcccceEEEEEcCCCC--CEEEEEeCCCCEEEEECCCccccceEEee----eccCCCCccEE
Q 048012 234 ---VKGDMYIRDLKNTK-GHICGLTCGEWHPKTK--ETILTSSEDGSLRIWDVNEFKSQKQVIKP----KLARPGRVAVT 303 (616)
Q Consensus 234 ---~~~~~~~~~~~~~~-~h~~~v~~~~~~p~~~--~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~----~~~~~~~~~v~ 303 (616)
..-......+.... .....|..+.|||-+. ..|++-..|++||+||+............ .........|.
T Consensus 104 ~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~ 183 (452)
T 3pbp_A 104 SIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDIT 183 (452)
T ss_dssp HHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEE
T ss_pred ccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCcchhccccccCCCcccceEE
Confidence 00000011121111 1357899999999763 38999999999999999862211111110 01111123688
Q ss_pred EEEECCCCCeEEEEe--CCCcEEEEe
Q 048012 304 TCAWDCDGKCIAGGI--GDGSIQVWN 327 (616)
Q Consensus 304 ~~~~sp~g~~l~~g~--~dg~I~iwd 327 (616)
+++|..++-.|.+.+ ..|-|+-.-
T Consensus 184 S~~Fg~~~lTLYvl~~t~~GDIYAlc 209 (452)
T 3pbp_A 184 DLEFSKDGLTLYCLNTTEGGDIFAFY 209 (452)
T ss_dssp EEEECTTSSCEEEEECTTSCEEEEES
T ss_pred EEEEcCCCcEEEEEecCCCCCEEEEC
Confidence 999999988888866 778887553
No 314
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=97.19 E-value=0.24 Score=57.46 Aligned_cols=154 Identities=14% Similarity=0.209 Sum_probs=89.3
Q ss_pred EEEEcCCCCCEEEEEe----------CCCCEEEEECCCccccceEEeeeccCCCCccEEEEEECCCCCeEEEEeCCCcEE
Q 048012 255 CGEWHPKTKETILTSS----------EDGSLRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWDCDGKCIAGGIGDGSIQ 324 (616)
Q Consensus 255 ~~~~~p~~~~~l~s~s----------~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~g~~dg~I~ 324 (616)
.+.|..+...+|+.|. ..|.|++|++... ....+.... -++.|++++-- +| +|++|- ...|+
T Consensus 836 ~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~-kL~lv~~~~----v~g~v~al~~~-~g-~Lla~i-g~~l~ 907 (1158)
T 3ei3_A 836 SCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDG-KLQTVAEKE----VKGAVYSMVEF-NG-KLLASI-NSTVR 907 (1158)
T ss_dssp EECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETT-EEEEEEEEE----ESSCEEEEEEE-TT-EEEEEE-TTEEE
T ss_pred EEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECC-EEEEEEEEE----cCCcCEEEeee-CC-EEEEEc-CCEEE
Confidence 3344443346888776 3478999998732 222222221 12367887633 35 444443 57899
Q ss_pred EEeCCCCCCCCCceeeecCCCCCeEEEEEcCCCCeEEEEecCCcEEEEeCCCCCCcceEecCCCCCCcceeEEECCCCCE
Q 048012 325 VWNLKPGWGSRPDIHVEKGHSDDITALKFSSDGRILLSRSFDGSLKVWDLRKMKEPLKVFEDLPNNYAQTNVAFSPDEQL 404 (616)
Q Consensus 325 iwd~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~ 404 (616)
+|++... ..+.....+-..|..+...-.+++++.|..-..|.++..+.....+..+.......+++++.|-.++ .
T Consensus 908 vy~l~~~----~~L~~~~~~~~~i~~~~l~~~~~~I~vgD~~~Sv~~~~y~~~~~~L~~~a~D~~~~~vta~~~ld~~-t 982 (1158)
T 3ei3_A 908 LYEWTTE----KELRTECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEILDDD-N 982 (1158)
T ss_dssp EEEECTT----SCEEEEEEECCCSCEEEEEEETTEEEEEESSBCEEEEEEETTTTEEEEEEECCSCBCEEEEEEEETT-E
T ss_pred EEECCCC----ceEEEEeeccccEEEEEEeccCCEEEEEEhhheEEEEEEEcCCCeEEEEEeecccccEEEEEEEccC-c
Confidence 9999753 2222111111123332332347889999877777776655434445555444555678888887655 5
Q ss_pred EEEeeccccccCCCceEEEEeCCC
Q 048012 405 FLTGTSVERESTTGGLLCFYDREK 428 (616)
Q Consensus 405 l~~gs~~~~~~~~dg~i~iwd~~~ 428 (616)
++.+. ..|.|.++....
T Consensus 983 ~l~aD-------~~gNl~vl~~~~ 999 (1158)
T 3ei3_A 983 FLGAE-------NAFNLFVCQKDS 999 (1158)
T ss_dssp EEEEE-------TTSEEEEEEECT
T ss_pred EEEEc-------CCCcEEEEecCC
Confidence 56566 788898887543
No 315
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=97.14 E-value=0.051 Score=52.88 Aligned_cols=235 Identities=9% Similarity=0.056 Sum_probs=113.4
Q ss_pred CEEEEEEcC--CcEEEEeCCCCccccccceecCCCCCCceEEEEecCCCCeEEEEeCC----CeEEEEECCCCeeeeEee
Q 048012 162 SRVLSGSYD--YTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSDRFLCVTGS----AQAKIYDRDGLTLGEFVK 235 (616)
Q Consensus 162 ~~lasgs~D--g~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~s~d----~~v~vwd~~~~~~~~~~~ 235 (616)
.+++.|+.+ ..+.+||..... ...+..... .......+.+ ++..++.|+.+ ..+.+||...........
T Consensus 13 ~l~~~GG~~~~~~~~~~d~~~~~--W~~~~~~p~-~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~ 87 (306)
T 3ii7_A 13 YRIALFGGSQPQSCRYFNPKDYS--WTDIRCPFE-KRRDAACVFW--DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLG 87 (306)
T ss_dssp EEEEEECCSSTTSEEEEETTTTE--EEECCCCSC-CCBSCEEEEE--TTEEEEECCBSSSBCCEEEEEETTTTEEEEEEC
T ss_pred eEEEEeCCCCCceEEEecCCCCC--EecCCCCCc-ccceeEEEEE--CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCC
Confidence 455566653 568888876532 111111111 1111122222 45555555543 678889988776543311
Q ss_pred CceeEeeccc-CCCcccceEEEEEcCCCCCEEEEEeCC------CCEEEEECCCccccceEEeeeccCCCCccEEEEEEC
Q 048012 236 GDMYIRDLKN-TKGHICGLTCGEWHPKTKETILTSSED------GSLRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWD 308 (616)
Q Consensus 236 ~~~~~~~~~~-~~~h~~~v~~~~~~p~~~~~l~s~s~D------g~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 308 (616)
+.. ...| ..+.+ ++ .+++.|+.+ ..+.+||+.+..-.. ..... ..+....++.+
T Consensus 88 -------~p~~r~~~----~~~~~--~~-~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~--~~~~p--~~r~~~~~~~~- 148 (306)
T 3ii7_A 88 -------PPTPRDSL----AACAA--EG-KIYTSGGSEVGNSALYLFECYDTRTESWHT--KPSML--TQRCSHGMVEA- 148 (306)
T ss_dssp -------CSSCCBSC----EEEEE--TT-EEEEECCBBTTBSCCCCEEEEETTTTEEEE--ECCCS--SCCBSCEEEEE-
T ss_pred -------CCccccce----eEEEE--CC-EEEEECCCCCCCcEeeeEEEEeCCCCceEe--CCCCc--CCcceeEEEEE-
Confidence 111 1122 22222 23 577777755 458899987653221 11111 11112223333
Q ss_pred CCCCeEEEEeC---------CCcEEEEeCCCCCCCCCceeeecCCCCCeEEEEEcCCCCeEEEEecC-----CcEEEEeC
Q 048012 309 CDGKCIAGGIG---------DGSIQVWNLKPGWGSRPDIHVEKGHSDDITALKFSSDGRILLSRSFD-----GSLKVWDL 374 (616)
Q Consensus 309 p~g~~l~~g~~---------dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~D-----g~v~lwd~ 374 (616)
++++++.|+. -..+.+||+.+. ....+..+......-..+.+ ++++++.|+.+ ..+.+||+
T Consensus 149 -~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~--~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~ 223 (306)
T 3ii7_A 149 -NGLIYVCGGSLGNNVSGRVLNSCEVYDPATE--TWTELCPMIEARKNHGLVFV--KDKIFAVGGQNGLGGLDNVEYYDI 223 (306)
T ss_dssp -TTEEEEECCEESCTTTCEECCCEEEEETTTT--EEEEECCCSSCCBSCEEEEE--TTEEEEECCEETTEEBCCEEEEET
T ss_pred -CCEEEEECCCCCCCCcccccceEEEeCCCCC--eEEECCCccchhhcceEEEE--CCEEEEEeCCCCCCCCceEEEeeC
Confidence 5677777754 345889998875 22222222111111222333 67777777754 35889998
Q ss_pred CCCCCcceEecCCCCC-CcceeEEECCCCCEEEEeeccccccCCCceEEEEeCCCCce
Q 048012 375 RKMKEPLKVFEDLPNN-YAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREKLEL 431 (616)
Q Consensus 375 ~~~~~~~~~~~~~~~~-~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~~~~ 431 (616)
.+.. ...+...+.. .....+.+ ++++++.|+.... ..-..|.+||+.+.+-
T Consensus 224 ~~~~--W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~--~~~~~~~~yd~~~~~W 275 (306)
T 3ii7_A 224 KLNE--WKMVSPMPWKGVTVKCAAV--GSIVYVLAGFQGV--GRLGHILEYNTETDKW 275 (306)
T ss_dssp TTTE--EEECCCCSCCBSCCEEEEE--TTEEEEEECBCSS--SBCCEEEEEETTTTEE
T ss_pred CCCc--EEECCCCCCCccceeEEEE--CCEEEEEeCcCCC--eeeeeEEEEcCCCCeE
Confidence 7632 2222222221 11223333 6777777763111 1235688999877543
No 316
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=97.14 E-value=0.035 Score=53.92 Aligned_cols=197 Identities=14% Similarity=0.115 Sum_probs=95.7
Q ss_pred CCCeEEEEeCC-----CeEEEEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCC-----CEE
Q 048012 207 TSDRFLCVTGS-----AQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDG-----SLR 276 (616)
Q Consensus 207 ~g~~l~~~s~d-----~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg-----~v~ 276 (616)
++..++.|+.+ ..+.+||.......... .+.........+.+ ++ .+++.|+.++ .+.
T Consensus 61 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~----------~~p~~r~~~~~~~~--~~-~iyv~GG~~~~~~~~~~~ 127 (302)
T 2xn4_A 61 AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVA----------NMRDRRSTLGAAVL--NG-LLYAVGGFDGSTGLSSVE 127 (302)
T ss_dssp TTEEEEESCBCSSSBCCCEEEEETTTTEEEEEC----------CCSSCCBSCEEEEE--TT-EEEEEEEECSSCEEEEEE
T ss_pred CCEEEEEeCcCCCccccceEEECCCCCceeeCC----------CCCccccceEEEEE--CC-EEEEEcCCCCCccCceEE
Confidence 45555555533 46888888877654331 11111111122222 23 5777777553 477
Q ss_pred EEECCCccccceEEeeeccCCCCccEEEEEECCCCCeEEEEeCC-------CcEEEEeCCCCCCCCCceeeecCCCCCeE
Q 048012 277 IWDVNEFKSQKQVIKPKLARPGRVAVTTCAWDCDGKCIAGGIGD-------GSIQVWNLKPGWGSRPDIHVEKGHSDDIT 349 (616)
Q Consensus 277 iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~g~~d-------g~I~iwd~~~~~~~~~~~~~~~~h~~~V~ 349 (616)
+||+.+..-.. ..... ..+....++.+ ++++++.|+.+ ..+.+||+.+. ....+..+........
T Consensus 128 ~~d~~~~~W~~--~~~~p--~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~--~W~~~~~~p~~r~~~~ 199 (302)
T 2xn4_A 128 AYNIKSNEWFH--VAPMN--TRRSSVGVGVV--GGLLYAVGGYDVASRQCLSTVECYNATTN--EWTYIAEMSTRRSGAG 199 (302)
T ss_dssp EEETTTTEEEE--ECCCS--SCCBSCEEEEE--TTEEEEECCEETTTTEECCCEEEEETTTT--EEEEECCCSSCCBSCE
T ss_pred EEeCCCCeEee--cCCCC--CcccCceEEEE--CCEEEEEeCCCCCCCccccEEEEEeCCCC--cEEECCCCcccccccc
Confidence 88887643221 11111 11212223333 56777777643 35889998765 1122222221111222
Q ss_pred EEEEcCCCCeEEEEecCC-----cEEEEeCCCCCCcceEecCCCCCCcceeEEECCCCCEEEEeeccccccCCCceEEEE
Q 048012 350 ALKFSSDGRILLSRSFDG-----SLKVWDLRKMKEPLKVFEDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFY 424 (616)
Q Consensus 350 ~l~~spdg~~l~s~s~Dg-----~v~lwd~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iw 424 (616)
.+.+ ++++++.|+.++ .+.+||+.+.. ...+...+....-..++ .-++++++.|+.... ..-..|.+|
T Consensus 200 ~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~--W~~~~~~~~~r~~~~~~-~~~~~i~v~GG~~~~--~~~~~v~~y 272 (302)
T 2xn4_A 200 VGVL--NNLLYAVGGHDGPLVRKSVEVYDPTTNA--WRQVADMNMCRRNAGVC-AVNGLLYVVGGDDGS--CNLASVEYY 272 (302)
T ss_dssp EEEE--TTEEEEECCBSSSSBCCCEEEEETTTTE--EEEECCCSSCCBSCEEE-EETTEEEEECCBCSS--SBCCCEEEE
T ss_pred EEEE--CCEEEEECCCCCCcccceEEEEeCCCCC--EeeCCCCCCccccCeEE-EECCEEEEECCcCCC--cccccEEEE
Confidence 3333 577888887653 68899987632 22222222111111122 236777777763110 012458889
Q ss_pred eCCCCce
Q 048012 425 DREKLEL 431 (616)
Q Consensus 425 d~~~~~~ 431 (616)
|+.+.+-
T Consensus 273 d~~~~~W 279 (302)
T 2xn4_A 273 NPTTDKW 279 (302)
T ss_dssp ETTTTEE
T ss_pred cCCCCeE
Confidence 9877643
No 317
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=97.06 E-value=0.28 Score=48.42 Aligned_cols=155 Identities=15% Similarity=0.064 Sum_probs=85.4
Q ss_pred eEEEEecCCCCeEEEEeCCCeEEEEECCCCeeeeEeeCceeEeec-ccCCCcccceEEEEEcCC---CCCEEEEEe--CC
Q 048012 199 VRNLSWSPTSDRFLCVTGSAQAKIYDRDGLTLGEFVKGDMYIRDL-KNTKGHICGLTCGEWHPK---TKETILTSS--ED 272 (616)
Q Consensus 199 v~~l~~sp~g~~l~~~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~-~~~~~h~~~v~~~~~~p~---~~~~l~s~s--~D 272 (616)
.+.|+|.|+|+.|++--..|.|++++..+...... ..+ ............++|+|+ +..++++-+ .+
T Consensus 34 P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v-------~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~ 106 (347)
T 3das_A 34 PWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTEL-------GEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASD 106 (347)
T ss_dssp EEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEE-------EECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSS
T ss_pred ceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeee-------cccCceeecCCCCceeeEeccccccCCEEEEEEecCCC
Confidence 78999999998665444489999998664443211 111 112334567899999995 333444322 34
Q ss_pred CCEEEEECCCcc-------ccceEEeeec-cCCCCccEEEEEECCCCCeEEEEeC-------------CCcEEEEeCCCC
Q 048012 273 GSLRIWDVNEFK-------SQKQVIKPKL-ARPGRVAVTTCAWDCDGKCIAGGIG-------------DGSIQVWNLKPG 331 (616)
Q Consensus 273 g~v~iwd~~~~~-------~~~~~~~~~~-~~~~~~~v~~~~~sp~g~~l~~g~~-------------dg~I~iwd~~~~ 331 (616)
..|.-|.+.... ....+..... ...| ....++|.|+|.+.++.+. .|.|.-++....
T Consensus 107 ~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H--~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ 184 (347)
T 3das_A 107 NRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIH--NGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGE 184 (347)
T ss_dssp EEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSC--CCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSS
T ss_pred CEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCc--cCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCC
Confidence 455556554411 1122222111 1122 3467899999987776442 356666665431
Q ss_pred CCC---C-CceeeecCCCCCeEEEEEcCCCCeEEEE
Q 048012 332 WGS---R-PDIHVEKGHSDDITALKFSSDGRILLSR 363 (616)
Q Consensus 332 ~~~---~-~~~~~~~~h~~~V~~l~~spdg~~l~s~ 363 (616)
-.. . .......+|.. ...|+|+|+|.++++=
T Consensus 185 ip~~nPf~~~~i~a~G~RN-p~Gla~dp~G~L~~~d 219 (347)
T 3das_A 185 PAPGNPFPGSPVYSYGHRN-VQGLAWDDKQRLFASE 219 (347)
T ss_dssp BCTTCSSTTCCEEEBCCSB-CCEEEECTTCCEEEEE
T ss_pred ccCCCCCCCCeEEeeCCCC-cceEEECCCCCEEEEe
Confidence 000 0 01122235544 5689999988766553
No 318
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=97.03 E-value=0.065 Score=52.19 Aligned_cols=240 Identities=10% Similarity=0.052 Sum_probs=114.3
Q ss_pred CCCCEEEEEEcC----CcEEEEeCCCCccccccceecCCCCCCceEEEEecCCCCeEEEEeC----C-----CeEEEEEC
Q 048012 159 HSGSRVLSGSYD----YTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSDRFLCVTG----S-----AQAKIYDR 225 (616)
Q Consensus 159 p~g~~lasgs~D----g~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~s~----d-----~~v~vwd~ 225 (616)
-++.+++.|+.+ ..+.+||..+.. ...+..+.. .......+.+ ++..++.|+. + ..+.+||.
T Consensus 23 ~~~~i~v~GG~~~~~~~~~~~~d~~~~~--W~~~~~~p~-~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~~d~ 97 (308)
T 1zgk_A 23 VGRLIYTAGGYFRQSLSYLEAYNPSNGT--WLRLADLQV-PRSGLAGCVV--GGLLYAVGGRNNSPDGNTDSSALDCYNP 97 (308)
T ss_dssp CCCCEEEECCBSSSBCCCEEEEETTTTE--EEECCCCSS-CCBSCEEEEE--TTEEEEECCEEEETTEEEECCCEEEEET
T ss_pred CCCEEEEEeCcCCCCcceEEEEcCCCCe--EeECCCCCc-ccccceEEEE--CCEEEEECCCcCCCCCCeecceEEEECC
Confidence 345677777642 357888876532 111111111 1111112222 4455555544 2 46888888
Q ss_pred CCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCC-----CCEEEEECCCccccceEEeeeccCCCCc
Q 048012 226 DGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSED-----GSLRIWDVNEFKSQKQVIKPKLARPGRV 300 (616)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~D-----g~v~iwd~~~~~~~~~~~~~~~~~~~~~ 300 (616)
.+....... .+.........+.+ ++ .+++.|+.+ ..+.+||+.+..-.. + ... ...+.
T Consensus 98 ~~~~W~~~~----------~~p~~r~~~~~~~~--~~-~iyv~GG~~~~~~~~~~~~yd~~~~~W~~-~-~~~--p~~r~ 160 (308)
T 1zgk_A 98 MTNQWSPCA----------PMSVPRNRIGVGVI--DG-HIYAVGGSHGCIHHNSVERYEPERDEWHL-V-APM--LTRRI 160 (308)
T ss_dssp TTTEEEECC----------CCSSCCBTCEEEEE--TT-EEEEECCEETTEECCCEEEEETTTTEEEE-C-CCC--SSCCB
T ss_pred CCCeEeECC----------CCCcCccccEEEEE--CC-EEEEEcCCCCCcccccEEEECCCCCeEeE-C-CCC--Ccccc
Confidence 877643321 11111111222222 23 467766643 358889987643221 1 111 11111
Q ss_pred cEEEEEECCCCCeEEEEeCC-----CcEEEEeCCCCCCCCCceeeecCCCCCeEEEEEcCCCCeEEEEecC-----CcEE
Q 048012 301 AVTTCAWDCDGKCIAGGIGD-----GSIQVWNLKPGWGSRPDIHVEKGHSDDITALKFSSDGRILLSRSFD-----GSLK 370 (616)
Q Consensus 301 ~v~~~~~sp~g~~l~~g~~d-----g~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~D-----g~v~ 370 (616)
...++.+ ++++++.|+.+ ..+.+||+.+. ....+..+........++.+ ++++++.|+.+ ..+.
T Consensus 161 ~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~--~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~ 234 (308)
T 1zgk_A 161 GVGVAVL--NRLLYAVGGFDGTNRLNSAECYYPERN--EWRMITAMNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVE 234 (308)
T ss_dssp SCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTT--EEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEE
T ss_pred ceEEEEE--CCEEEEEeCCCCCCcCceEEEEeCCCC--eEeeCCCCCCccccceEEEE--CCEEEEEeCCCCCCccceEE
Confidence 2233333 57777777764 45889998765 11111111111112223333 67788888765 4589
Q ss_pred EEeCCCCCCcceEecCCCCCCcceeEEECCCCCEEEEeeccccccCCCceEEEEeCCCCce
Q 048012 371 VWDLRKMKEPLKVFEDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREKLEL 431 (616)
Q Consensus 371 lwd~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~~~~ 431 (616)
+||+.+.. ...+...+....-.+++. -++++++.|+... ...-..|.+||+.+.+-
T Consensus 235 ~yd~~~~~--W~~~~~~p~~r~~~~~~~-~~~~i~v~GG~~~--~~~~~~v~~yd~~~~~W 290 (308)
T 1zgk_A 235 RYDVETET--WTFVAPMKHRRSALGITV-HQGRIYVLGGYDG--HTFLDSVECYDPDTDTW 290 (308)
T ss_dssp EEETTTTE--EEECCCCSSCCBSCEEEE-ETTEEEEECCBCS--SCBCCEEEEEETTTTEE
T ss_pred EEeCCCCc--EEECCCCCCCccceEEEE-ECCEEEEEcCcCC--CcccceEEEEcCCCCEE
Confidence 99987632 222222221111112222 2677777776311 11235688899877654
No 319
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=96.96 E-value=0.22 Score=57.76 Aligned_cols=235 Identities=12% Similarity=0.101 Sum_probs=123.1
Q ss_pred CCCCceEEEEecCCCCeEEEEeCCCeEEEEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCC-----CCEEEE
Q 048012 194 SEGHQVRNLSWSPTSDRFLCVTGSAQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKT-----KETILT 268 (616)
Q Consensus 194 ~~~~~v~~l~~sp~g~~l~~~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~-----~~~l~s 268 (616)
..+..|...+.+. .++++++ ++.+.++.++...+.+..+ ..-...|.|+++.+.. ..+++.
T Consensus 511 p~~~~I~~As~n~--~~vvva~-g~~l~~fel~~~~L~~~~~-----------~~l~~evscl~i~~~~~~~~~s~~~aV 576 (1158)
T 3ei3_A 511 PQAKNISVASCNS--SQVVVAV-GRALYYLQIHPQELRQISH-----------TEMEHEVACLDITPLGDSNGLSPLCAI 576 (1158)
T ss_dssp TTCCCCCEEEECS--SEEEEEE-TTEEEEEEEETTEEEEEEE-----------EECSSCEEEEECCCCSSSTTCCSEEEE
T ss_pred CCCCEEEEEEeCC--CEEEEEE-CCEEEEEEeeCCceeeecc-----------cCCCCceEEEEeecCCCCcccccEEEE
Confidence 3344566666543 4566665 5778777776544433211 1123478999987642 358888
Q ss_pred EeC-CCCEEEEECCCccccceEEeeeccCCCCccEEEEEEC--CCCCeEEEEeCCCcEEEEeCCCCCCCCCcee-eecCC
Q 048012 269 SSE-DGSLRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWD--CDGKCIAGGIGDGSIQVWNLKPGWGSRPDIH-VEKGH 344 (616)
Q Consensus 269 ~s~-Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s--p~g~~l~~g~~dg~I~iwd~~~~~~~~~~~~-~~~~h 344 (616)
|.. |++|+|+++.......... . +......++.+. ....+|.+|-.||.+..+.+........... ...+
T Consensus 577 g~~~d~tv~I~sL~~l~~~~~~~---L--~~~~~p~si~l~~~~~~~~L~igl~dG~l~~~~~d~~tg~l~d~r~~~LG- 650 (1158)
T 3ei3_A 577 GLWTDISARILKLPSFELLHKEM---L--GGEIIPRSILMTTFESSHYLLCALGDGALFYFGLNIETGLLSDRKKVTLG- 650 (1158)
T ss_dssp EETTTTEEEEEETTTCCEEEEEE---C--CSSCCEEEEEEEEETTEEEEEEEETTSEEEEEEECTTTCCEEEEEEEECC-
T ss_pred EECCCCEEEEEECCCCCeEEEEE---C--CCCCCCcEEEEEEeCCCcEEEEEeCCCeEEEEEEcCCCCccccceeEEcC-
Confidence 986 9999999998643332111 1 111123333222 2345789999999987666543110111111 1222
Q ss_pred CCCeEEEEEcCCCCeEEEEecCCcEEEEeCCCCCCcceEecCCCCCCcceeEEECCC--CCEEEEeeccccccCCCceEE
Q 048012 345 SDDITALKFSSDGRILLSRSFDGSLKVWDLRKMKEPLKVFEDLPNNYAQTNVAFSPD--EQLFLTGTSVERESTTGGLLC 422 (616)
Q Consensus 345 ~~~V~~l~~spdg~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~v~~v~fspd--g~~l~~gs~~~~~~~~dg~i~ 422 (616)
..++.-..|...|..-+-+..+.-..+|--+ .+ +. +.............|+.. ..-++.. .++.++
T Consensus 651 ~~pv~L~~~~~~~~~~V~a~s~rp~liy~~~-~~--l~-~s~l~~~~v~~~~~F~se~~~~g~v~~--------~~~~Lr 718 (1158)
T 3ei3_A 651 TQPTVLRTFRSLSTTNVFACSDRPTVIYSSN-HK--LV-FSNVNLKEVNYMCPLNSDGYPDSLALA--------NNSTLT 718 (1158)
T ss_dssp SSCCEEEEEESSSCEEEEEESSSCEEEEESS-SS--EE-EEEBSSSCCCEEEEECCSSSTTEEEEE--------CSSCEE
T ss_pred CCceEEEEEeeCCceeEEEECCCCEEEEEcC-Cc--eE-EeccChHHhceEeccCcccCCCcEEEE--------cCCceE
Confidence 3355444454444333333334544444433 11 11 111111111233456442 2334443 345688
Q ss_pred EEeCCCCceEEEEecCCCCCeEEEEEcCCCCcEEEEec
Q 048012 423 FYDREKLELVSRVGISPACSVVQCAWHPKLNQIFATAG 460 (616)
Q Consensus 423 iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~ 460 (616)
|..+.+......-.++-...+..+++||..+.+++++.
T Consensus 719 I~~i~~~~~~~~~~ipL~~Tprri~y~~~~~~~~v~~~ 756 (1158)
T 3ei3_A 719 IGTIDEIQKLHIRTVPLYESPRKICYQEVSQCFGVLSS 756 (1158)
T ss_dssp EEEECCSSSEEEEEEECSSEEEEEEEEGGGTEEEEEEE
T ss_pred EEEecccCCeeEEEEeCCCCceEEEEcCCCCEEEEEEE
Confidence 88876655444333344578999999999888777664
No 320
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=96.84 E-value=0.076 Score=53.33 Aligned_cols=150 Identities=15% Similarity=0.155 Sum_probs=90.6
Q ss_pred EEEEEeCCCCEEEEECCCccccceEEeeeccCCCCccEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCCCCC--------
Q 048012 265 TILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWDCDGKCIAGGIGDGSIQVWNLKPGWGSRP-------- 336 (616)
Q Consensus 265 ~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~g~~dg~I~iwd~~~~~~~~~-------- 336 (616)
.++.+- ++.||.-++......+.+..+... .-..|..+..+|+|++||..+ +..|.|..+..+.....
T Consensus 34 ~i~~a~-~n~iR~~~i~~~~~Yk~L~~~~~i--~f~~i~qlvlSpsG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~~~~ 109 (452)
T 3pbp_A 34 RIVFIQ-DNIIRWYNVLTDSLYHSLNFSRHL--VLDDTFHVISSTSGDLLCLFN-DNEIFVMEVPWGYSNVEDVSIQDAF 109 (452)
T ss_dssp EEEEEE-TTEEEEEETTTCSSCEEEECTTTC--CCCTTCEEEECTTSSEEEEEC-SSEEEEEECCTTCSCCCCHHHHHTT
T ss_pred EEEEEE-CCEEEEEECCCCCcceEEecCccc--ccCceeEEEECCCCCEEEEec-CCeEEEEEecCccccCccccccccc
Confidence 444433 477888887754322222221100 011356799999999999886 56899988874321111
Q ss_pred ceeeecC------CCCCeEEEEEcC---CCCeEEEEecCCcEEEEeCCC-CCCcceEecCC-------CCCCcceeEEEC
Q 048012 337 DIHVEKG------HSDDITALKFSS---DGRILLSRSFDGSLKVWDLRK-MKEPLKVFEDL-------PNNYAQTNVAFS 399 (616)
Q Consensus 337 ~~~~~~~------h~~~V~~l~~sp---dg~~l~s~s~Dg~v~lwd~~~-~~~~~~~~~~~-------~~~~~v~~v~fs 399 (616)
....+.- ...+|..+.|+| .+..|++-..|++|++||+.. ...|. .+... .....|.+++|.
T Consensus 110 q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S~~Fg 188 (452)
T 3pbp_A 110 QIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDITDLEFS 188 (452)
T ss_dssp EEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEEEEEEC
T ss_pred ceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccccccCCCcccceEEEEEEc
Confidence 0111111 246799999999 456899999999999999985 33333 33221 112458899999
Q ss_pred CCCCEEEEeeccccccCCCceEEEE
Q 048012 400 PDEQLFLTGTSVERESTTGGLLCFY 424 (616)
Q Consensus 400 pdg~~l~~gs~~~~~~~~dg~i~iw 424 (616)
.++-.|.+.+. ..+|.|+-.
T Consensus 189 ~~~lTLYvl~~-----t~~GDIYAl 208 (452)
T 3pbp_A 189 KDGLTLYCLNT-----TEGGDIFAF 208 (452)
T ss_dssp TTSSCEEEEEC-----TTSCEEEEE
T ss_pred CCCcEEEEEec-----CCCCCEEEE
Confidence 98876666331 056666543
No 321
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=96.69 E-value=0.35 Score=48.63 Aligned_cols=189 Identities=13% Similarity=0.101 Sum_probs=111.6
Q ss_pred CCcEEEEeCCCCccccccceecCCCCCCceEEEEecCCCCeEEEEeC-------CCeEEEEECCCCeeeeEeeCceeEee
Q 048012 170 DYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSDRFLCVTG-------SAQAKIYDRDGLTLGEFVKGDMYIRD 242 (616)
Q Consensus 170 Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~s~-------d~~v~vwd~~~~~~~~~~~~~~~~~~ 242 (616)
+..|+-|++.+.....+-+.......+..|.....+++.++++..+- .|.+.+|..+...-
T Consensus 124 ~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~s------------ 191 (494)
T 1bpo_A 124 DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVS------------ 191 (494)
T ss_dssp SSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCCE------------
T ss_pred CCeeEEecccCCCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeecccccc------------
Confidence 56799999977545555555555555778999999999999776542 36788888775542
Q ss_pred cccCCCcccceEEEEEcCC--CCCEEEEEeCC---CCEEEEECCCc-----cccceEE-eeeccCCCCccEEEEEECCCC
Q 048012 243 LKNTKGHICGLTCGEWHPK--TKETILTSSED---GSLRIWDVNEF-----KSQKQVI-KPKLARPGRVAVTTCAWDCDG 311 (616)
Q Consensus 243 ~~~~~~h~~~v~~~~~~p~--~~~~l~s~s~D---g~v~iwd~~~~-----~~~~~~~-~~~~~~~~~~~v~~~~~sp~g 311 (616)
+.+.||.+....+...-+ ...+|+.+... +.+.|-++... ...+... ..........-..++..++.-
T Consensus 192 -Q~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~ky 270 (494)
T 1bpo_A 192 -QPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKH 270 (494)
T ss_dssp -EEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTT
T ss_pred -chheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccC
Confidence 224677666555444321 11244444443 68999988543 0111111 111111222245677888888
Q ss_pred CeEEEEeCCCcEEEEeCCCCCCCCCceeeecCCCCCeEEEEEcCCCCeEEEEecCCcEEEEeCC
Q 048012 312 KCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHSDDITALKFSSDGRILLSRSFDGSLKVWDLR 375 (616)
Q Consensus 312 ~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~v~lwd~~ 375 (616)
..++.-+.-|.|++||+.++ .++..-+-....|..-+.+....=++.....|.|.-..+.
T Consensus 271 gviyviTK~G~i~lyDleTg----t~i~~nrIs~~~iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~ 330 (494)
T 1bpo_A 271 DVVFLITKYGYIHLYDLETG----TCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLSVCVE 330 (494)
T ss_dssp TEEEEEETTSEEEEEETTTC----CEEEEEECCSSCEEEEEEETTTTEEEEEETTCEEEEEEEC
T ss_pred CEEEEEecCceEEEEecccc----eeeeeecccCCceEEecccCCCCcEEEEccCceEEEEEEc
Confidence 88999999999999999987 3444433333444444443333334444455555444444
No 322
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=96.46 E-value=0.46 Score=45.91 Aligned_cols=193 Identities=11% Similarity=0.125 Sum_probs=94.7
Q ss_pred EEEEeC--CCeEEEEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCC----CCEEEEECCCcc
Q 048012 211 FLCVTG--SAQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSED----GSLRIWDVNEFK 284 (616)
Q Consensus 211 l~~~s~--d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~D----g~v~iwd~~~~~ 284 (616)
++.|+. ...+.+||.......... .+.........+.+ +..+++.|+.+ ..+.+||+.+..
T Consensus 15 ~~~GG~~~~~~~~~~d~~~~~W~~~~----------~~p~~r~~~~~~~~---~~~lyv~GG~~~~~~~~~~~~d~~~~~ 81 (306)
T 3ii7_A 15 IALFGGSQPQSCRYFNPKDYSWTDIR----------CPFEKRRDAACVFW---DNVVYILGGSQLFPIKRMDCYNVVKDS 81 (306)
T ss_dssp EEEECCSSTTSEEEEETTTTEEEECC----------CCSCCCBSCEEEEE---TTEEEEECCBSSSBCCEEEEEETTTTE
T ss_pred EEEeCCCCCceEEEecCCCCCEecCC----------CCCcccceeEEEEE---CCEEEEEeCCCCCCcceEEEEeCCCCe
Confidence 344443 367889998877643321 11111111222222 23577777754 568889987653
Q ss_pred ccceEEeeeccCCCCccEEEEEECCCCCeEEEEeCC------CcEEEEeCCCCCCCCCceeeecCCCCCeEEEEEcCCCC
Q 048012 285 SQKQVIKPKLARPGRVAVTTCAWDCDGKCIAGGIGD------GSIQVWNLKPGWGSRPDIHVEKGHSDDITALKFSSDGR 358 (616)
Q Consensus 285 ~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~g~~d------g~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~ 358 (616)
-.. + .... ..+.....+.+ ++++++.|+.+ ..+.+||..+. ....+..+......-.++.+ +++
T Consensus 82 W~~-~-~~~p--~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~--~W~~~~~~p~~r~~~~~~~~--~~~ 151 (306)
T 3ii7_A 82 WYS-K-LGPP--TPRDSLAACAA--EGKIYTSGGSEVGNSALYLFECYDTRTE--SWHTKPSMLTQRCSHGMVEA--NGL 151 (306)
T ss_dssp EEE-E-ECCS--SCCBSCEEEEE--TTEEEEECCBBTTBSCCCCEEEEETTTT--EEEEECCCSSCCBSCEEEEE--TTE
T ss_pred EEE-C-CCCC--ccccceeEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCCC--ceEeCCCCcCCcceeEEEEE--CCE
Confidence 221 1 1111 11212233333 57777777765 46899998865 11122111111111222222 567
Q ss_pred eEEEEec---------CCcEEEEeCCCCCCcceEecCCCCCCcceeEEECCCCCEEEEeeccccccCCCceEEEEeCCCC
Q 048012 359 ILLSRSF---------DGSLKVWDLRKMKEPLKVFEDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREKL 429 (616)
Q Consensus 359 ~l~s~s~---------Dg~v~lwd~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~~ 429 (616)
+++.|+. -..+.+||+.+.. ...+...+....-.+++. -++++++.|+.... ..-..|.+||+.+.
T Consensus 152 iyv~GG~~~~~~~~~~~~~~~~yd~~~~~--W~~~~~~p~~r~~~~~~~-~~~~i~v~GG~~~~--~~~~~~~~yd~~~~ 226 (306)
T 3ii7_A 152 IYVCGGSLGNNVSGRVLNSCEVYDPATET--WTELCPMIEARKNHGLVF-VKDKIFAVGGQNGL--GGLDNVEYYDIKLN 226 (306)
T ss_dssp EEEECCEESCTTTCEECCCEEEEETTTTE--EEEECCCSSCCBSCEEEE-ETTEEEEECCEETT--EEBCCEEEEETTTT
T ss_pred EEEECCCCCCCCcccccceEEEeCCCCCe--EEECCCccchhhcceEEE-ECCEEEEEeCCCCC--CCCceEEEeeCCCC
Confidence 7777764 3458899987642 223322222111112222 26777777762111 01246889998876
Q ss_pred ce
Q 048012 430 EL 431 (616)
Q Consensus 430 ~~ 431 (616)
+-
T Consensus 227 ~W 228 (306)
T 3ii7_A 227 EW 228 (306)
T ss_dssp EE
T ss_pred cE
Confidence 53
No 323
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=96.46 E-value=0.61 Score=48.38 Aligned_cols=76 Identities=12% Similarity=0.197 Sum_probs=51.4
Q ss_pred CeEEEEEcCCCCeEEEEe-cCCcEEEEeCCCCCC--------cc-eEecCCCCCCcceeEEECCCCCEEEEeeccccccC
Q 048012 347 DITALKFSSDGRILLSRS-FDGSLKVWDLRKMKE--------PL-KVFEDLPNNYAQTNVAFSPDEQLFLTGTSVEREST 416 (616)
Q Consensus 347 ~V~~l~~spdg~~l~s~s-~Dg~v~lwd~~~~~~--------~~-~~~~~~~~~~~v~~v~fspdg~~l~~gs~~~~~~~ 416 (616)
....+.++|||++++.++ .+.+|.++|+++... +. ...............+|.++|....+-.
T Consensus 324 sPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~GlGPlHt~Fd~~G~aYTtlf------- 396 (638)
T 3sbq_A 324 NPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGLGPLHTTFDGRGNAYTTLF------- 396 (638)
T ss_dssp SCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCSCEEEEEECSSSEEEEEET-------
T ss_pred CCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCCcccEEEECCCCceEeeee-------
Confidence 346788999999988877 578999999985211 00 1111222334478899999994434443
Q ss_pred CCceEEEEeCCCC
Q 048012 417 TGGLLCFYDREKL 429 (616)
Q Consensus 417 ~dg~i~iwd~~~~ 429 (616)
.|..|.-|++...
T Consensus 397 idSqvvkWni~~a 409 (638)
T 3sbq_A 397 IDSQVVKWNMEEA 409 (638)
T ss_dssp TTTEEEEEEHHHH
T ss_pred ecceEEEEeccHH
Confidence 7899999998653
No 324
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=96.36 E-value=0.25 Score=49.09 Aligned_cols=155 Identities=7% Similarity=-0.056 Sum_probs=69.0
Q ss_pred CCEEEEECCCccccceEEeeeccCCCCccEEEEEECCCCCeEEEEeC------CCcEEEEeC--CCCCCCCCceeeecCC
Q 048012 273 GSLRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWDCDGKCIAGGIG------DGSIQVWNL--KPGWGSRPDIHVEKGH 344 (616)
Q Consensus 273 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~g~~------dg~I~iwd~--~~~~~~~~~~~~~~~h 344 (616)
..+.+||+.+..-.. ..... ...+....++.+ ++++++.|+. ...+.+||+ .+. ....+..+...
T Consensus 168 ~~v~~yd~~~~~W~~--~~~~p-~~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~--~W~~~~~~~~~ 240 (357)
T 2uvk_A 168 KFLLSFDPSTQQWSY--AGESP-WYGTAGAAVVNK--GDKTWLINGEAKPGLRTDAVFELDFTGNNL--KWNKLAPVSSP 240 (357)
T ss_dssp CEEEEEETTTTEEEE--EEECS-SCCCBSCEEEEE--TTEEEEECCEEETTEECCCEEEEECC---C--EEEECCCSSTT
T ss_pred ccEEEEeCCCCcEEE--CCCCC-CCCcccccEEEE--CCEEEEEeeecCCCcccCceEEEEecCCCC--cEEecCCCCCC
Confidence 468899987653222 11111 111111222222 5667777654 345777886 332 11111111111
Q ss_pred CCCeEEEEEcCCCCeEEEEecC----------------------CcEEEEeCCCCCCcceEecCCCCCCcceeEEECCCC
Q 048012 345 SDDITALKFSSDGRILLSRSFD----------------------GSLKVWDLRKMKEPLKVFEDLPNNYAQTNVAFSPDE 402 (616)
Q Consensus 345 ~~~V~~l~~spdg~~l~s~s~D----------------------g~v~lwd~~~~~~~~~~~~~~~~~~~v~~v~fspdg 402 (616)
.......+...++++++.|+.+ ..+.+||+.+.. ...+...+... ....++.-++
T Consensus 241 ~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~--W~~~~~~p~~r-~~~~~~~~~~ 317 (357)
T 2uvk_A 241 DGVAGGFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGK--WDKSGELSQGR-AYGVSLPWNN 317 (357)
T ss_dssp TCCBSCEEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC-----CEEEEECSSCC-BSSEEEEETT
T ss_pred cccccceEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCc--eeeCCCCCCCc-ccceeEEeCC
Confidence 1111111222356777777742 247789987543 22222222211 1122333467
Q ss_pred CEEEEeeccccccCCCceEEEEeCCCCceEEEEecC
Q 048012 403 QLFLTGTSVERESTTGGLLCFYDREKLELVSRVGIS 438 (616)
Q Consensus 403 ~~l~~gs~~~~~~~~dg~i~iwd~~~~~~~~~~~~~ 438 (616)
++++.|+..... ..-..|.++++++.+.+.....+
T Consensus 318 ~i~v~GG~~~~~-~~~~~v~~l~~~~~~~~~~~~~~ 352 (357)
T 2uvk_A 318 SLLIIGGETAGG-KAVTDSVLITVKDNKVTVQNLEH 352 (357)
T ss_dssp EEEEEEEECGGG-CEEEEEEEEEC-CCSCEEEC---
T ss_pred EEEEEeeeCCCC-CEeeeEEEEEEcCcEeEeeeccc
Confidence 888888732110 01245777888888877665443
No 325
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=96.35 E-value=0.19 Score=58.16 Aligned_cols=230 Identities=14% Similarity=0.179 Sum_probs=129.9
Q ss_pred CcEEEEeCCCCccccccceecCCCCCCceEEEEecCCCCeEEEEeCCCeEEEEECCCCeeeeEeeCceeEeecccCCCcc
Q 048012 171 YTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSDRFLCVTGSAQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHI 250 (616)
Q Consensus 171 g~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~ 250 (616)
..|.|-|+.......+... ..-+.-.+|..+.|+.- ...++.|+|++.... ++... ..
T Consensus 48 ~~vvIidl~~~~~~~rrpi--------~AdsAIMnP~~~iiALr-ag~~lQiFnl~~k~k------------lks~~-~~ 105 (1630)
T 1xi4_A 48 AQVVIIDMNDPSNPIRRPI--------SADSAIMNPASKVIALK-AGKTLQIFNIEMKSK------------MKAHT-MT 105 (1630)
T ss_pred ceEEEEECCCCCCcccccc--------cchhhccCCCcceEEEe-cCCeEEEeehHHhhh------------hcccc-cC
Confidence 3688888876443211111 12233456666555544 478999999986542 11111 12
Q ss_pred cceEEEEEcCCCCCEEEEEeCCCCEEEEECCCccccceEEeeeccCCCCccEEEEEECCCCCeEEEEe-------CCCcE
Q 048012 251 CGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWDCDGKCIAGGI-------GDGSI 323 (616)
Q Consensus 251 ~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~g~-------~dg~I 323 (616)
..|.--.|-... .|+-.+ +..|.-|++........+...+.... ...|..-..+++.++++..+ -.|.+
T Consensus 106 e~VvfWkWis~~--~l~lVT-~~aVyHW~~~~~s~P~k~fdR~~~L~-~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~m 181 (1630)
T 1xi4_A 106 DDVTFWKWISLN--TVALVT-DNAVYHWSMEGESQPVKMFDRHSSLA-GCQIINYRTDAKQKWLLLTGISAQQNRVVGAM 181 (1630)
T ss_pred CCceEEEecCCC--eeEEEc-CCeEEEeccCCCCccHHHHhcchhcc-cCeeEEeeeCCCCCeEEEEeeccCCCccccee
Confidence 345556676543 444443 46799999964222222211111111 23577777788888776433 35889
Q ss_pred EEEeCCCCCCCCCceeeecCCCCCeEEEEEcC--C-CCeEEEEec---CCcEEEEeCCCC---CCc-----ceEecCC-C
Q 048012 324 QVWNLKPGWGSRPDIHVEKGHSDDITALKFSS--D-GRILLSRSF---DGSLKVWDLRKM---KEP-----LKVFEDL-P 388 (616)
Q Consensus 324 ~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp--d-g~~l~s~s~---Dg~v~lwd~~~~---~~~-----~~~~~~~-~ 388 (616)
.+|....+ ....+.||......+...- . ..+++.+.. .++++|-++... ..+ +.++-.. .
T Consensus 182 QLyS~er~-----~sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~ 256 (1630)
T 1xi4_A 182 QLYSVDRK-----VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEA 256 (1630)
T ss_pred eeeecccc-----cchhhhHhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCccc
Confidence 99998753 5556677766554444421 1 123322221 268999988543 111 1111000 0
Q ss_pred CCCcceeEEECCCCCEEEEeeccccccCCCceEEEEeCCCCceEEEEecC
Q 048012 389 NNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREKLELVSRVGIS 438 (616)
Q Consensus 389 ~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~~~~~~~~~~~ 438 (616)
...-..++..|+.-..+..-+ .-|.|++||+.++.++..-.++
T Consensus 257 ~~Dfpv~~~vs~k~g~iy~it-------k~G~~~~~d~~t~~~i~~~ris 299 (1630)
T 1xi4_A 257 QNDFPVAMQISEKHDVVFLIT-------KYGYIHLYDLETGTCIYMNRIS 299 (1630)
T ss_pred ccCcceEEEeccccCEEEEEe-------cCceEEEEecccchhhhhcccc
Confidence 122345678888878888777 8899999999999998776654
No 326
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=96.31 E-value=0.42 Score=46.45 Aligned_cols=237 Identities=16% Similarity=0.102 Sum_probs=110.0
Q ss_pred EEEEEEcCCcEEEEeCCCCccccccceecCCCCCCceEEEEecCCCCeEEEEeC-----C------CeEEEEECCCCeee
Q 048012 163 RVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSDRFLCVTG-----S------AQAKIYDRDGLTLG 231 (616)
Q Consensus 163 ~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~s~-----d------~~v~vwd~~~~~~~ 231 (616)
+++.|+ ..+.+||..+.. ... ... +.............++..++.|+. . ..+.+||....+..
T Consensus 7 l~~~GG--~~~~~yd~~~~~--W~~-~~~-~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~ 80 (315)
T 4asc_A 7 IFMISE--EGAVAYDPAANE--CYC-ASL-SSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWL 80 (315)
T ss_dssp EEEEET--TEEEEEETTTTE--EEE-EEC-CCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEE
T ss_pred EEEEcC--CceEEECCCCCe--Eec-CCC-CCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEE
Confidence 344454 568888887642 111 111 111112222233346667777763 1 13778888776643
Q ss_pred eEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCC--------CCEEEEECCCccccceEEeeeccCCCCccEE
Q 048012 232 EFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSED--------GSLRIWDVNEFKSQKQVIKPKLARPGRVAVT 303 (616)
Q Consensus 232 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~D--------g~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~ 303 (616)
.. ..+.........+.+ +..+++.|+.+ ..+.+||+.+..-.. .... ...+....
T Consensus 81 ~~----------~~~p~~r~~~~~~~~---~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~--~~~~--p~~r~~~~ 143 (315)
T 4asc_A 81 GM----------PPLPSPRCLFGLGEA---LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGE--SDPL--PYVVYGHT 143 (315)
T ss_dssp EC----------CCBSSCEESCEEEEE---TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEE--CCCC--SSCCBSCE
T ss_pred EC----------CCCCcchhceeEEEE---CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeE--CCCC--CCccccee
Confidence 22 111111111122222 23567777632 458899987653211 1111 11111222
Q ss_pred EEEECCCCCeEEEEeC-C-----CcEEEEeCCCCCCCCCceeeecCCCCCeEEEEEcCCCCeEEEEecCC-----cEEEE
Q 048012 304 TCAWDCDGKCIAGGIG-D-----GSIQVWNLKPGWGSRPDIHVEKGHSDDITALKFSSDGRILLSRSFDG-----SLKVW 372 (616)
Q Consensus 304 ~~~~sp~g~~l~~g~~-d-----g~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg-----~v~lw 372 (616)
++. .++++++.|+. + ..+.+||+.+. ....+..+......-.++.+ ++++++.|+.++ .+.+|
T Consensus 144 ~~~--~~~~iyv~GG~~~~~~~~~~~~~yd~~~~--~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~y 217 (315)
T 4asc_A 144 VLS--HMDLVYVIGGKGSDRKCLNKMCVYDPKKF--EWKELAPMQTARSLFGATVH--DGRIIVAAGVTDTGLTSSAEVY 217 (315)
T ss_dssp EEE--ETTEEEEECCBCTTSCBCCCEEEEETTTT--EEEECCCCSSCCBSCEEEEE--TTEEEEEEEECSSSEEEEEEEE
T ss_pred EEE--ECCEEEEEeCCCCCCcccceEEEEeCCCC--eEEECCCCCCchhceEEEEE--CCEEEEEeccCCCCccceEEEE
Confidence 233 35677777776 2 46899998865 11122111111111222333 677888888655 48888
Q ss_pred eCCCCCCcceEecCCCCCCcceeEEECCCCCEEEEeecccccc-------CCCceEEEEeCCCCce
Q 048012 373 DLRKMKEPLKVFEDLPNNYAQTNVAFSPDEQLFLTGTSVERES-------TTGGLLCFYDREKLEL 431 (616)
Q Consensus 373 d~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~gs~~~~~~-------~~dg~i~iwd~~~~~~ 431 (616)
|+.+.. ...+...+....-.+++ .-++++++.|+...... ..-..|.+||+.+.+-
T Consensus 218 d~~~~~--W~~~~~~p~~r~~~~~~-~~~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W 280 (315)
T 4asc_A 218 SITDNK--WAPFEAFPQERSSLSLV-SLVGTLYAIGGFATLETESGELVPTELNDIWRYNEEEKKW 280 (315)
T ss_dssp ETTTTE--EEEECCCSSCCBSCEEE-EETTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTTEE
T ss_pred ECCCCe--EEECCCCCCcccceeEE-EECCEEEEECCccccCcCCccccccccCcEEEecCCCChh
Confidence 987632 22332222211111222 22567777776311000 0113477888776643
No 327
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=96.28 E-value=1.3 Score=45.70 Aligned_cols=114 Identities=12% Similarity=0.043 Sum_probs=60.6
Q ss_pred cccEEEEEECCCCCEEEEEEcCCcEEEEeCCCCccccccceecCC-----CCCCceEEEEecCC---CCeEEEEeC----
Q 048012 149 TKIVSALAVDHSGSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEP-----SEGHQVRNLSWSPT---SDRFLCVTG---- 216 (616)
Q Consensus 149 ~~~V~~v~~sp~g~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~-----~~~~~v~~l~~sp~---g~~l~~~s~---- 216 (616)
-.....|+|.|+|+++++-...+.|++++..++. ...+..+.. .....+..|+|+|+ +.+|.++..
T Consensus 26 l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~--~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~ 103 (454)
T 1cru_A 26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGS--VKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNP 103 (454)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCC--EEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECT
T ss_pred CCCceEEEEcCCCcEEEEEcCCCEEEEEECCCCc--EeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEecccc
Confidence 3456799999999877765433468888754322 111211111 12456889999995 555554432
Q ss_pred ---------CCeEEEEECCCC--eeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEe
Q 048012 217 ---------SAQAKIYDRDGL--TLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSS 270 (616)
Q Consensus 217 ---------d~~v~vwd~~~~--~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s 270 (616)
...|.-|+.+.. .+... ...+..+.....| ....+.|.|++. ++++.+
T Consensus 104 ~~~~~~~~~~~~v~r~~~~~~~~~~~~~---~~i~~~~p~~~~H--~~~~l~f~pDG~-Lyv~~G 162 (454)
T 1cru_A 104 KSTDKELPNQTIIRRYTYNKSTDTLEKP---VDLLAGLPSSKDH--QSGRLVIGPDQK-IYYTIG 162 (454)
T ss_dssp TC--CCSCEEEEEEEEEEETTTTEEEEE---EEEEEEECCCSSC--CEEEEEECTTSC-EEEEEC
T ss_pred CCCccccccccEEEEEEECCCCCCcCCc---EEEEEcCCCCCCC--CCCeEeECCCCe-EEEEEC
Confidence 124555554321 22110 1111112212234 468999999984 666544
No 328
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=96.21 E-value=0.91 Score=43.85 Aligned_cols=152 Identities=11% Similarity=0.076 Sum_probs=76.6
Q ss_pred CEEEEEeC----C-----CCEEEEECCCccccceEEeeeccCCCCccEEEEEECCCCCeEEEEeCC-----CcEEEEeCC
Q 048012 264 ETILTSSE----D-----GSLRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWDCDGKCIAGGIGD-----GSIQVWNLK 329 (616)
Q Consensus 264 ~~l~s~s~----D-----g~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~g~~d-----g~I~iwd~~ 329 (616)
.+++.|+. + ..+.+||+.+..-.. + ... ...+.....+.+ ++++++.|+.+ ..+.+||+.
T Consensus 72 ~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~-~-~~~--p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~ 145 (308)
T 1zgk_A 72 LLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSP-C-APM--SVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPE 145 (308)
T ss_dssp EEEEECCEEEETTEEEECCCEEEEETTTTEEEE-C-CCC--SSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETT
T ss_pred EEEEECCCcCCCCCCeecceEEEECCCCCeEeE-C-CCC--CcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCC
Confidence 46776665 2 468889987643211 1 111 111222233333 56777777644 368899987
Q ss_pred CCCCCCCceeeecCCCCCeEEEEEcCCCCeEEEEecC-----CcEEEEeCCCCCCcceEecCCCCC-CcceeEEECCCCC
Q 048012 330 PGWGSRPDIHVEKGHSDDITALKFSSDGRILLSRSFD-----GSLKVWDLRKMKEPLKVFEDLPNN-YAQTNVAFSPDEQ 403 (616)
Q Consensus 330 ~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~D-----g~v~lwd~~~~~~~~~~~~~~~~~-~~v~~v~fspdg~ 403 (616)
+. ....+..+......-.++.+ ++.+++.|+.+ ..+.+||+.+.. ...+...+.. .....+.+ +++
T Consensus 146 ~~--~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~--W~~~~~~p~~r~~~~~~~~--~~~ 217 (308)
T 1zgk_A 146 RD--EWHLVAPMLTRRIGVGVAVL--NRLLYAVGGFDGTNRLNSAECYYPERNE--WRMITAMNTIRSGAGVCVL--HNC 217 (308)
T ss_dssp TT--EEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTE--EEECCCCSSCCBSCEEEEE--TTE
T ss_pred CC--eEeECCCCCccccceEEEEE--CCEEEEEeCCCCCCcCceEEEEeCCCCe--EeeCCCCCCccccceEEEE--CCE
Confidence 65 11111111111112223333 67777777765 458899987532 2222222211 11222333 677
Q ss_pred EEEEeeccccccCCCceEEEEeCCCCce
Q 048012 404 LFLTGTSVERESTTGGLLCFYDREKLEL 431 (616)
Q Consensus 404 ~l~~gs~~~~~~~~dg~i~iwd~~~~~~ 431 (616)
+++.|+.... ..-..+.+||+.+.+-
T Consensus 218 iyv~GG~~~~--~~~~~v~~yd~~~~~W 243 (308)
T 1zgk_A 218 IYAAGGYDGQ--DQLNSVERYDVETETW 243 (308)
T ss_dssp EEEECCBCSS--SBCCCEEEEETTTTEE
T ss_pred EEEEeCCCCC--CccceEEEEeCCCCcE
Confidence 7777763110 0135689999887654
No 329
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=96.18 E-value=0.96 Score=43.39 Aligned_cols=188 Identities=10% Similarity=0.049 Sum_probs=93.2
Q ss_pred CeEEEEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCC-----CCEEEEECCCcccc-ceEEe
Q 048012 218 AQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSED-----GSLRIWDVNEFKSQ-KQVIK 291 (616)
Q Consensus 218 ~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~D-----g~v~iwd~~~~~~~-~~~~~ 291 (616)
..+.+||..+....... .+.........+.+ +..+++.|+.+ ..+.+||+.+.... .....
T Consensus 31 ~~~~~~d~~~~~W~~~~----------~~p~~r~~~~~~~~---~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~ 97 (301)
T 2vpj_A 31 DVVEKYDPKTQEWSFLP----------SITRKRRYVASVSL---HDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVA 97 (301)
T ss_dssp CCEEEEETTTTEEEECC----------CCSSCCBSCEEEEE---TTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEEC
T ss_pred eEEEEEcCCCCeEEeCC----------CCChhhccccEEEE---CCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECC
Confidence 47888888876643321 11111111122222 23577777754 46899998775410 11111
Q ss_pred eeccCCCCccEEEEEECCCCCeEEEEeCCC-----cEEEEeCCCCCCCCCceeeecCCCCCeEEEEEcCCCCeEEEEecC
Q 048012 292 PKLARPGRVAVTTCAWDCDGKCIAGGIGDG-----SIQVWNLKPGWGSRPDIHVEKGHSDDITALKFSSDGRILLSRSFD 366 (616)
Q Consensus 292 ~~~~~~~~~~v~~~~~sp~g~~l~~g~~dg-----~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~D 366 (616)
... ..+....++.+ ++++++.|+.++ .+.+||+.+. ....+..+......-.++.+ ++++++.|+.+
T Consensus 98 ~~p--~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~--~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~ 169 (301)
T 2vpj_A 98 PMN--VRRGLAGATTL--GDMIYVSGGFDGSRRHTSMERYDPNID--QWSMLGDMQTAREGAGLVVA--SGVIYCLGGYD 169 (301)
T ss_dssp CCS--SCCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTT--EEEEEEECSSCCBSCEEEEE--TTEEEEECCBC
T ss_pred CCC--CCccceeEEEE--CCEEEEEcccCCCcccceEEEEcCCCC--eEEECCCCCCCcccceEEEE--CCEEEEECCCC
Confidence 111 11222233333 577777776543 5889998765 22222222211111222222 67788887765
Q ss_pred -----CcEEEEeCCCCCCcceEecCCCCCC-cceeEEECCCCCEEEEeeccccccCCCceEEEEeCCCCceE
Q 048012 367 -----GSLKVWDLRKMKEPLKVFEDLPNNY-AQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREKLELV 432 (616)
Q Consensus 367 -----g~v~lwd~~~~~~~~~~~~~~~~~~-~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~~~~~ 432 (616)
..+.+||+.+.. ...+...+... ....+.+ ++++++.|+.... ..-..|.+||+.+.+-.
T Consensus 170 ~~~~~~~~~~~d~~~~~--W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~--~~~~~v~~yd~~~~~W~ 235 (301)
T 2vpj_A 170 GLNILNSVEKYDPHTGH--WTNVTPMATKRSGAGVALL--NDHIYVVGGFDGT--AHLSSVEAYNIRTDSWT 235 (301)
T ss_dssp SSCBCCCEEEEETTTTE--EEEECCCSSCCBSCEEEEE--TTEEEEECCBCSS--SBCCCEEEEETTTTEEE
T ss_pred CCcccceEEEEeCCCCc--EEeCCCCCcccccceEEEE--CCEEEEEeCCCCC--cccceEEEEeCCCCcEE
Confidence 358899987632 22222222211 1222222 6677777763111 01357899999877544
No 330
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=96.13 E-value=0.41 Score=46.32 Aligned_cols=200 Identities=12% Similarity=0.062 Sum_probs=106.7
Q ss_pred CCCCeEEEEe--CCCeEEEEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCC-----------
Q 048012 206 PTSDRFLCVT--GSAQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSED----------- 272 (616)
Q Consensus 206 p~g~~l~~~s--~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~D----------- 272 (616)
.++.+|.... .++.|...+.++.....+.. -.+--+++++..+..+...+
T Consensus 23 ~~g~~iy~~n~~d~~~ly~~~~dg~~~~~l~~-----------------~~~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~ 85 (302)
T 3s25_A 23 ESDGEVFFSNTNDNGRLYAMNIDGSNIHKLSN-----------------DTAMYINADKNYVYYVRNNNQKITSQTFFSY 85 (302)
T ss_dssp EETTEEEEEEGGGTTEEEEEETTSCSCEEEEE-----------------EEEEEEEECSSEEEEEEECC------CCSSC
T ss_pred EeCCEEEEEeCCCCceEEEEcCCCCCCEEccC-----------------CceeeEEEcCCEEEEEECCCCcccccceecc
Confidence 4566666554 24667777776655332211 11234566675444444433
Q ss_pred --CCEEEEECCCccccceEEeeeccCCCCccEEEEEECCCCCeEEEEe--C--CCcEEEEeCCCCCCCCCceeeecCCCC
Q 048012 273 --GSLRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWDCDGKCIAGGI--G--DGSIQVWNLKPGWGSRPDIHVEKGHSD 346 (616)
Q Consensus 273 --g~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~g~--~--dg~I~iwd~~~~~~~~~~~~~~~~h~~ 346 (616)
..|+..++..... ..+... .+..|+++++.|+-.. . ...|+..++... ....+..+..
T Consensus 86 n~~~Iy~i~~dg~~~--~~l~~~---------~~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs-----~~~~lt~~~~ 149 (302)
T 3s25_A 86 DRNSLCRIKRNGHGS--TVLDPD---------PCIYASLIGNYIYYLHYDTQTATSLYRIRIDGE-----EKKKIKNHYL 149 (302)
T ss_dssp CSEEEEEEETTSCCC--EEEECS---------CEEEEEEETTEEEEEEESSSSCEEEEEEETTSC-----CCEEEESSCC
T ss_pred CCCeEEEEeCCCCcc--eEeecC---------CccEEEEeCCEEEEEeecCCCCceEEEEECCCC-----CeEEEeCCCc
Confidence 3567777765431 121110 1235677888888765 3 345555566532 2233333322
Q ss_pred CeEEEEEcCCCCeEEEEec-CCcEEEEeCCCCCCcceEecCCCCCCcceeEEECCCCCEEEEeeccccccCCCceEEEEe
Q 048012 347 DITALKFSSDGRILLSRSF-DGSLKVWDLRKMKEPLKVFEDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYD 425 (616)
Q Consensus 347 ~V~~l~~spdg~~l~s~s~-Dg~v~lwd~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd 425 (616)
++|+++++.|+-.+. ...|...++.... ...++.. . . ...++|++.+|+-... .....|..-+
T Consensus 150 ----~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~-~~~l~~~---~--~-~~~~~P~g~~iy~t~~-----~~~~~I~~~~ 213 (302)
T 3s25_A 150 ----FTCNTSDRYFYYNNPKNGQLYRYDTASQS-EALFYDC---N--C-YKPVVLDDTNVYYMDV-----NRDNAIVHVN 213 (302)
T ss_dssp ----CCSEEETTEEEEECTTTCCEEEEETTTTE-EEEEECS---C--E-EEEEEEETTEEEEEEG-----GGTTEEEEEC
T ss_pred ----eEeeEECCEEEEEeCCCceEEEEECCCCC-EEEEeCC---C--c-cceeeecCCEEEEEEc-----CCCcEEEEEE
Confidence 456778888886664 5678888876432 2233321 1 1 2346699999887652 0224677777
Q ss_pred CCCCceEEEEecCCCCCeEEEEEcCCCCcEEEEec
Q 048012 426 REKLELVSRVGISPACSVVQCAWHPKLNQIFATAG 460 (616)
Q Consensus 426 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~ 460 (616)
+..... ..+. ...+ ..|+|.+.+|+.+..
T Consensus 214 ldG~~~-~~Lt---~~~~--~~~~~~g~~Iy~~~~ 242 (302)
T 3s25_A 214 INNPNP-VVLT---EANI--EHYNVYGSLIFYQRG 242 (302)
T ss_dssp SSSCCC-EECS---CSCE--EEEEEETTEEEEEEC
T ss_pred CCCCCe-EEEe---CCCc--ceEEECCCEEEEEEC
Confidence 766553 2331 1223 347888888876643
No 331
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=96.12 E-value=0.14 Score=49.45 Aligned_cols=189 Identities=11% Similarity=0.074 Sum_probs=92.9
Q ss_pred CCCEEEEEEcCC-----cEEEEeCCCCccccccceecCCCCCCceEEEEecCCCCeEEEEeCC-----CeEEEEECCCCe
Q 048012 160 SGSRVLSGSYDY-----TVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSDRFLCVTGS-----AQAKIYDRDGLT 229 (616)
Q Consensus 160 ~g~~lasgs~Dg-----~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~s~d-----~~v~vwd~~~~~ 229 (616)
++.+++.|+.++ .+.+||..+.. ......+.. .......+.+ ++..++.|+.+ ..+.+||..+..
T Consensus 61 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~--W~~~~~~p~-~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~ 135 (302)
T 2xn4_A 61 AGLVFAVGGFNGSLRVRTVDSYDPVKDQ--WTSVANMRD-RRSTLGAAVL--NGLLYAVGGFDGSTGLSSVEAYNIKSNE 135 (302)
T ss_dssp TTEEEEESCBCSSSBCCCEEEEETTTTE--EEEECCCSS-CCBSCEEEEE--TTEEEEEEEECSSCEEEEEEEEETTTTE
T ss_pred CCEEEEEeCcCCCccccceEEECCCCCc--eeeCCCCCc-cccceEEEEE--CCEEEEEcCCCCCccCceEEEEeCCCCe
Confidence 566777777653 57888876532 111111111 1111122222 55666666644 357788887766
Q ss_pred eeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCC-------CCEEEEECCCccccceEEeeeccCCCCccE
Q 048012 230 LGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSED-------GSLRIWDVNEFKSQKQVIKPKLARPGRVAV 302 (616)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~D-------g~v~iwd~~~~~~~~~~~~~~~~~~~~~~v 302 (616)
..... .+........++.+ ++ .+++.|+.+ ..+.+||+.+..-.. ..... ..+...
T Consensus 136 W~~~~----------~~p~~r~~~~~~~~--~~-~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~--~~~~p--~~r~~~ 198 (302)
T 2xn4_A 136 WFHVA----------PMNTRRSSVGVGVV--GG-LLYAVGGYDVASRQCLSTVECYNATTNEWTY--IAEMS--TRRSGA 198 (302)
T ss_dssp EEEEC----------CCSSCCBSCEEEEE--TT-EEEEECCEETTTTEECCCEEEEETTTTEEEE--ECCCS--SCCBSC
T ss_pred EeecC----------CCCCcccCceEEEE--CC-EEEEEeCCCCCCCccccEEEEEeCCCCcEEE--CCCCc--cccccc
Confidence 43321 11111111122222 23 466666542 358899987643221 11111 111122
Q ss_pred EEEEECCCCCeEEEEeCC-----CcEEEEeCCCCCCCCCceeeecCCCCCeEEEEEcCCCCeEEEEecCC-----cEEEE
Q 048012 303 TTCAWDCDGKCIAGGIGD-----GSIQVWNLKPGWGSRPDIHVEKGHSDDITALKFSSDGRILLSRSFDG-----SLKVW 372 (616)
Q Consensus 303 ~~~~~sp~g~~l~~g~~d-----g~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg-----~v~lw 372 (616)
.++.+ ++++++.|+.+ ..|.+||+.+. ....+..+.........+.+ ++++++.|+.++ .|.+|
T Consensus 199 ~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~--~W~~~~~~~~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~y 272 (302)
T 2xn4_A 199 GVGVL--NNLLYAVGGHDGPLVRKSVEVYDPTTN--AWRQVADMNMCRRNAGVCAV--NGLLYVVGGDDGSCNLASVEYY 272 (302)
T ss_dssp EEEEE--TTEEEEECCBSSSSBCCCEEEEETTTT--EEEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEE
T ss_pred cEEEE--CCEEEEECCCCCCcccceEEEEeCCCC--CEeeCCCCCCccccCeEEEE--CCEEEEECCcCCCcccccEEEE
Confidence 33333 57778887764 36899998865 11222211111111222222 677888887654 48888
Q ss_pred eCCC
Q 048012 373 DLRK 376 (616)
Q Consensus 373 d~~~ 376 (616)
|+.+
T Consensus 273 d~~~ 276 (302)
T 2xn4_A 273 NPTT 276 (302)
T ss_dssp ETTT
T ss_pred cCCC
Confidence 8875
No 332
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=96.10 E-value=1.1 Score=43.33 Aligned_cols=208 Identities=13% Similarity=0.072 Sum_probs=120.1
Q ss_pred ccEEEEEECCCCCEEEEEEcCCcEEEEeCCCCccccccceecCCCCCCceEEEEecCCCCeEEEEeC-------CCeEEE
Q 048012 150 KIVSALAVDHSGSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSDRFLCVTG-------SAQAKI 222 (616)
Q Consensus 150 ~~V~~v~~sp~g~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~s~-------d~~v~v 222 (616)
..|.-=.|-.. +.|+-.. +..|+-|++.+.....+-+.......+..|.....+++.++++..+- .|.+.+
T Consensus 107 e~VvfWkWis~-~~L~lVT-~taVyHWs~~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQL 184 (365)
T 2xzh_A 107 DDVTFWKWISL-NTVALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQL 184 (365)
T ss_dssp SCEEEEEECSS-SEEEEEE-SSEEEEEESSTTCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEE
T ss_pred CccEEEEecCC-CeEEEEc-CCcEEEEcccCCCCCceeeecchhcccceEEEEEECCCCCEEEEEeEeccCCccceeEEE
Confidence 34444455433 3333333 56799999987555555555555556778999999999998776542 267888
Q ss_pred EECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCC--CCCEEEEEeC---CCCEEEEECCCc---c--ccce-EEe
Q 048012 223 YDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPK--TKETILTSSE---DGSLRIWDVNEF---K--SQKQ-VIK 291 (616)
Q Consensus 223 wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~--~~~~l~s~s~---Dg~v~iwd~~~~---~--~~~~-~~~ 291 (616)
|..+...- +.+.||.+....+...-+ ...+|+.+.. .+.++|-++... . ..+. ...
T Consensus 185 YS~er~~s-------------Q~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~~~~~~~f~kk~vdi 251 (365)
T 2xzh_A 185 YSVDRKVS-------------QPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDV 251 (365)
T ss_dssp EETTTTEE-------------EEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSSCCTTCCCCCCEEEEE
T ss_pred Eeeccccc-------------ceeeeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCCCCCCCccccccee
Confidence 88876542 224666665544433211 1123443332 257888888543 1 1111 111
Q ss_pred eeccCCCCccEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCCCCCceeeecCCCCCeEEEEEcCCCCeEEEEecCCcEEE
Q 048012 292 PKLARPGRVAVTTCAWDCDGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHSDDITALKFSSDGRILLSRSFDGSLKV 371 (616)
Q Consensus 292 ~~~~~~~~~~v~~~~~sp~g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~v~l 371 (616)
.........-..++..++.-..++.-+.-|.|++||+.++ .++..-+-....|..-+.+....=++.....|.|.-
T Consensus 252 ~fppea~~DFPVamqvs~kygviyviTK~G~ihlyDleTg----t~i~~nrIS~d~iF~ta~~~~~~Gi~~Vnr~GqVl~ 327 (365)
T 2xzh_A 252 FFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETG----TCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLS 327 (365)
T ss_dssp CCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTC----CEEEEEECCSSCEEEEEEEGGGTEEEEEETTCEEEE
T ss_pred eCCccccCCceEEEEecccCCEEEEEeCCcEEEEEEcccC----cEEEEeccCCCceEEecccCCCCcEEEEcCCCEEEE
Confidence 1111122234567778888888999999999999999987 454444444445554444443334445556666665
Q ss_pred EeCCC
Q 048012 372 WDLRK 376 (616)
Q Consensus 372 wd~~~ 376 (616)
..+..
T Consensus 328 v~v~~ 332 (365)
T 2xzh_A 328 VCVEE 332 (365)
T ss_dssp EEECT
T ss_pred EEECc
Confidence 55554
No 333
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=96.07 E-value=0.31 Score=50.28 Aligned_cols=112 Identities=11% Similarity=0.091 Sum_probs=61.2
Q ss_pred eEEEEecCCCCeEEEEeCCCeEEEEECCCCeeeeEeeCceeEeecccC---CCcccceEEEEEcCC---CCCEEEEEeC-
Q 048012 199 VRNLSWSPTSDRFLCVTGSAQAKIYDRDGLTLGEFVKGDMYIRDLKNT---KGHICGLTCGEWHPK---TKETILTSSE- 271 (616)
Q Consensus 199 v~~l~~sp~g~~l~~~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~---~~h~~~v~~~~~~p~---~~~~l~s~s~- 271 (616)
.+.|+|.|+|+++++-...+.|++++..+.....+. .+... ......+..|+|+|+ +..++++-+.
T Consensus 29 P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~-------~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~ 101 (454)
T 1cru_A 29 PHALLWGPDNQIWLTERATGKILRVNPESGSVKTVF-------QVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFK 101 (454)
T ss_dssp EEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEE-------ECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEE
T ss_pred ceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEe-------cCCccccccCCCCceeEEEECCCcCcCCEEEEEEecc
Confidence 679999999986654433347888876543332221 11111 123567889999995 4444444432
Q ss_pred -----------CCCEEEEECCCcc----ccceEEeeeccCCCCccEEEEEECCCCCeEEEEe
Q 048012 272 -----------DGSLRIWDVNEFK----SQKQVIKPKLARPGRVAVTTCAWDCDGKCIAGGI 318 (616)
Q Consensus 272 -----------Dg~v~iwd~~~~~----~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~g~ 318 (616)
...|.-|++.... ....+...... ........++|.|+|++.++.+
T Consensus 102 ~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~-~~~H~~~~l~f~pDG~Lyv~~G 162 (454)
T 1cru_A 102 NPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPS-SKDHQSGRLVIGPDQKIYYTIG 162 (454)
T ss_dssp CTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECC-CSSCCEEEEEECTTSCEEEEEC
T ss_pred ccCCCccccccccEEEEEEECCCCCCcCCcEEEEEcCCC-CCCCCCCeEeECCCCeEEEEEC
Confidence 1245555543211 11122221111 1112578999999999777654
No 334
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=96.00 E-value=0.67 Score=42.10 Aligned_cols=163 Identities=12% Similarity=0.023 Sum_probs=82.9
Q ss_pred CceEEEEecCCCCeEEEEeCCCeEEEEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEE
Q 048012 197 HQVRNLSWSPTSDRFLCVTGSAQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLR 276 (616)
Q Consensus 197 ~~v~~l~~sp~g~~l~~~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~ 276 (616)
..+..++|+|+|.+.++ .++.+.-.+..+..-....... +.+-. .+-. ...++.|.|++ .+.++ .||.|+
T Consensus 41 ~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~---t~IG~-~Gw~-~F~a~~fD~~G-~LYav--~dG~iy 110 (236)
T 1tl2_A 41 SNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRA---KKIGN-GGWN-QFQFLFFDPNG-YLYAV--SKDKLY 110 (236)
T ss_dssp TTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHC---EEEEC-SCGG-GCSEEEECTTS-CEEEE--ETTEEE
T ss_pred ccceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccc---cEecc-cccc-cceEEEECCCC-CEEEe--CCCEEE
Confidence 35789999998886655 6666555444321100000000 00000 0111 25788999987 35555 569888
Q ss_pred EEECCCccccceEE-eeeccCCCCccEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCCCCC--ceeee-cCCCCCeEEEE
Q 048012 277 IWDVNEFKSQKQVI-KPKLARPGRVAVTTCAWDCDGKCIAGGIGDGSIQVWNLKPGWGSRP--DIHVE-KGHSDDITALK 352 (616)
Q Consensus 277 iwd~~~~~~~~~~~-~~~~~~~~~~~v~~~~~sp~g~~l~~g~~dg~I~iwd~~~~~~~~~--~~~~~-~~h~~~V~~l~ 352 (616)
-|+-.+.....-+. .......+-..+..|.+.|+|.+.++. ||.++-+.........- ....+ ...-....-+.
T Consensus 111 r~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~ 188 (236)
T 1tl2_A 111 KASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLF 188 (236)
T ss_dssp EESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEE
T ss_pred EeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEEecCCCCCCCcccccccceeccCCcceEEEEE
Confidence 77753322111100 011111222368999999999988877 78754433221100000 00111 12222345577
Q ss_pred EcCCCCeEEEEecCCcEEEEeCC
Q 048012 353 FSSDGRILLSRSFDGSLKVWDLR 375 (616)
Q Consensus 353 ~spdg~~l~s~s~Dg~v~lwd~~ 375 (616)
|.+++.++++. ++ +||-..
T Consensus 189 f~~~G~l~~v~--~g--~~Y~~~ 207 (236)
T 1tl2_A 189 FSSVGTLFGVQ--GG--KFYEDY 207 (236)
T ss_dssp ECTTSCEEEEE--TT--EEEEES
T ss_pred ECCCCcEEEEe--CC--eEEecC
Confidence 99999877766 66 445433
No 335
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=95.51 E-value=0.6 Score=45.31 Aligned_cols=136 Identities=13% Similarity=0.215 Sum_probs=67.6
Q ss_pred CeEEEEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeC-C-----CCEEEEECCCccccceEEe
Q 048012 218 AQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSE-D-----GSLRIWDVNEFKSQKQVIK 291 (616)
Q Consensus 218 ~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~-D-----g~v~iwd~~~~~~~~~~~~ 291 (616)
..+.+||..+...... ..+........++.+ +..+++.|+. + ..+.+||+.+..-.. ..
T Consensus 117 ~~~~~~d~~~~~W~~~----------~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~--~~ 181 (315)
T 4asc_A 117 DSVMCYDRLSFKWGES----------DPLPYVVYGHTVLSH---MDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKE--LA 181 (315)
T ss_dssp CCEEEEETTTTEEEEC----------CCCSSCCBSCEEEEE---TTEEEEECCBCTTSCBCCCEEEEETTTTEEEE--CC
T ss_pred ceEEEECCCCCcEeEC----------CCCCCcccceeEEEE---CCEEEEEeCCCCCCcccceEEEEeCCCCeEEE--CC
Confidence 4688899887654322 111111111122222 2247777765 2 468899987643221 11
Q ss_pred eeccCCCCccEEEEEECCCCCeEEEEeCCC-----cEEEEeCCCCCCCCCceeeecCCCCCeEEEEEcCCCCeEEEEecC
Q 048012 292 PKLARPGRVAVTTCAWDCDGKCIAGGIGDG-----SIQVWNLKPGWGSRPDIHVEKGHSDDITALKFSSDGRILLSRSFD 366 (616)
Q Consensus 292 ~~~~~~~~~~v~~~~~sp~g~~l~~g~~dg-----~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~D 366 (616)
.. ...+....++.+ ++++++.|+.++ .+.+||+.+. ....+..+.........+.+ ++++++.|+.+
T Consensus 182 ~~--p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~--~W~~~~~~p~~r~~~~~~~~--~~~l~v~GG~~ 253 (315)
T 4asc_A 182 PM--QTARSLFGATVH--DGRIIVAAGVTDTGLTSSAEVYSITDN--KWAPFEAFPQERSSLSLVSL--VGTLYAIGGFA 253 (315)
T ss_dssp CC--SSCCBSCEEEEE--TTEEEEEEEECSSSEEEEEEEEETTTT--EEEEECCCSSCCBSCEEEEE--TTEEEEEEEEE
T ss_pred CC--CCchhceEEEEE--CCEEEEEeccCCCCccceEEEEECCCC--eEEECCCCCCcccceeEEEE--CCEEEEECCcc
Confidence 11 111212233333 567788887654 5889998765 22222222111112223333 56778887764
Q ss_pred C--------------cEEEEeCCC
Q 048012 367 G--------------SLKVWDLRK 376 (616)
Q Consensus 367 g--------------~v~lwd~~~ 376 (616)
+ .|.+||+.+
T Consensus 254 ~~~~~~~~~~~~~~~~v~~yd~~~ 277 (315)
T 4asc_A 254 TLETESGELVPTELNDIWRYNEEE 277 (315)
T ss_dssp EEECTTSCEEEEEEEEEEEEETTT
T ss_pred ccCcCCccccccccCcEEEecCCC
Confidence 2 366777765
No 336
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=95.13 E-value=2.9 Score=41.49 Aligned_cols=216 Identities=13% Similarity=0.049 Sum_probs=110.7
Q ss_pred ECCCCCEEEEEEcCCcEEEEeCCCCcccc---ccceecCCCCCCceEEEEecCCCCeEEEEeCCCeEEEEECCCCeeee-
Q 048012 157 VDHSGSRVLSGSYDYTVRMYDFQGMNSRL---QSFRQLEPSEGHQVRNLSWSPTSDRFLCVTGSAQAKIYDRDGLTLGE- 232 (616)
Q Consensus 157 ~sp~g~~lasgs~Dg~i~iwd~~~~~~~~---~~~~~~~~~~~~~v~~l~~sp~g~~l~~~s~d~~v~vwd~~~~~~~~- 232 (616)
+-++..++++.+.+|.|+--.+....... +....+....+..+..+......+.|+..+..|.+.-+.........
T Consensus 3 lI~~e~~~v~lT~~GyIKr~~l~~y~~~~r~g~g~~~~~lke~D~l~~~~~~~t~d~ll~fT~~G~~~~~~~~eip~~~r 82 (370)
T 3l6v_A 3 LIAPEDVVVTLSHAGYAKRQPVSAYRAQRRGGRGRSAASTKEEDFIDQLWLVNTHDTLLTFTSSGKVFWLPVHQLPEAGS 82 (370)
T ss_dssp CCCCCCEEEEEESSCEEEEEEHHHHHHTCCCCCCSEEEECSCCCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCT
T ss_pred cccCCCEEEEEeCCCEEEEeeHHHhhhhccCCCCceecccCCCCEEEEEEEecCCCEEEEEeCCCeEEEEEHHHCcCCCc
Confidence 34677889999999999976543211000 01112222234456666666666778888888877666543211100
Q ss_pred EeeCceeEeecccCCCcccceEEEEEcC--CCCCEEEEEeCCCCEEEEECCCccccc--eEEeeeccCCCCccEEEEEEC
Q 048012 233 FVKGDMYIRDLKNTKGHICGLTCGEWHP--KTKETILTSSEDGSLRIWDVNEFKSQK--QVIKPKLARPGRVAVTTCAWD 308 (616)
Q Consensus 233 ~~~~~~~~~~~~~~~~h~~~v~~~~~~p--~~~~~l~s~s~Dg~v~iwd~~~~~~~~--~~~~~~~~~~~~~~v~~~~~s 308 (616)
...|. .+..+..+.. ...|..+.... ....+|+.++..|.++...+....... -+..... ... ..+..+...
T Consensus 83 ~a~G~-~i~~ll~L~~-~e~Iv~~~~~~~~~~~~~ll~~T~~G~vKrt~l~e~~~~~~~G~~ai~L-~~~-d~lv~v~~~ 158 (370)
T 3l6v_A 83 NARGR-PIINWIPLES-GERVQAVLPVREYADNRYVFMATRNGTVKKTPLSEFAFRLARGKIAINL-DEG-DALVGVALT 158 (370)
T ss_dssp TSCCE-EGGGSCCCCT-TCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCSCCTTCEESSCC-CTT-CCEEEEEEE
T ss_pred ccCCc-CHhhccCCCC-CCEEEEEEEeccCCCCcEEEEEeCCCeEEEeEHHHhhcccCCceEEEEe-CCC-CEEEEEEEe
Confidence 00110 1111111222 23344443322 123589999999999998876543211 1111111 111 234444443
Q ss_pred CCCCeEEEEeCCCcEEEEeCCCCCCCC---Cceeee-cCCCCCeEEEEEcC-----------------------------
Q 048012 309 CDGKCIAGGIGDGSIQVWNLKPGWGSR---PDIHVE-KGHSDDITALKFSS----------------------------- 355 (616)
Q Consensus 309 p~g~~l~~g~~dg~I~iwd~~~~~~~~---~~~~~~-~~h~~~V~~l~~sp----------------------------- 355 (616)
.....|+..+..|.+..|....-.... .-+..+ ......|.++...+
T Consensus 159 ~~~~~i~l~T~~G~~irf~~~~v~~~gR~a~GV~~i~L~~~d~Vv~~~~~~~~~~~~~~~~~~~~~~~~~t~~g~~~~~~ 238 (370)
T 3l6v_A 159 DGDRDVLLFASNGKTVRFGESTVRSMGRTATGVRGIRLAKGEEVVSLIVSERAGGVEDEVEDESAEEVVETTDGAEPAVI 238 (370)
T ss_dssp CSCCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCTTCCEEEEEEECCC---------------------------
T ss_pred CCCceEEEEeCCCeEEEEEccccCccCCCCCCeeeEEeCCCCEEEEEEEecccccccccccccccccccccccccccccc
Confidence 455678888889998888754210000 001111 11234455554443
Q ss_pred ------CCCeEEEEecCCcEEEEeCCC
Q 048012 356 ------DGRILLSRSFDGSLKVWDLRK 376 (616)
Q Consensus 356 ------dg~~l~s~s~Dg~v~lwd~~~ 376 (616)
++..|++.+..|..+...+..
T Consensus 239 ~~~~~~~~~~il~vTe~G~gKrt~~~e 265 (370)
T 3l6v_A 239 DVADNGDVAYILTATENGYGKRTPLAE 265 (370)
T ss_dssp --------CEEEEEETTSEEEEEEGGG
T ss_pred ccccccCCceEEEeeCCCCEEEEEHHH
Confidence 456788999999999888764
No 337
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=95.12 E-value=0.21 Score=45.31 Aligned_cols=112 Identities=12% Similarity=0.020 Sum_probs=63.5
Q ss_pred cceEEEEEcCCCCCEEEEEeCCCCEEEEECCCccccceEEe-eeccCCCCccEEEEEECCCCCeEEEEeCCCcEEEEeCC
Q 048012 251 CGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIK-PKLARPGRVAVTTCAWDCDGKCIAGGIGDGSIQVWNLK 329 (616)
Q Consensus 251 ~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~-~~~~~~~~~~v~~~~~sp~g~~l~~g~~dg~I~iwd~~ 329 (616)
..+..++|+|++ .+.+. .+|.|.-.+..+.....-+-. ......+-....++.|.++|.+.++ .||.|+-++-.
T Consensus 41 ~~~~~laf~P~G-~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~pP 115 (236)
T 1tl2_A 41 SNFKFLFLSPGG-ELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDPNGYLYAV--SKDKLYKASPP 115 (236)
T ss_dssp TTCSEEEECTTS-CEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECTTSCEEEE--ETTEEEEESCC
T ss_pred ccceeEEECCCc-cEEEE--eCCeEEEECCCCCCcccccccccEecccccccceEEEECCCCCEEEe--CCCEEEEeCCC
Confidence 367799999976 45555 667666655543221110000 0000111112478899999998888 56999888753
Q ss_pred CCCCCCCce----eeecCCCCCeEEEEEcCCCCeEEEEecCCcEE
Q 048012 330 PGWGSRPDI----HVEKGHSDDITALKFSSDGRILLSRSFDGSLK 370 (616)
Q Consensus 330 ~~~~~~~~~----~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~v~ 370 (616)
+.. ...-+ .+-..-=..+..|.|.|+|.+.+.. |+.++
T Consensus 116 ~~~-~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~ly 157 (236)
T 1tl2_A 116 QSD-TDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFY 157 (236)
T ss_dssp CST-TCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEE
T ss_pred cCC-CCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEE
Confidence 321 00110 0111111468999999999877766 77743
No 338
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=95.11 E-value=2.2 Score=41.31 Aligned_cols=156 Identities=17% Similarity=0.218 Sum_probs=75.1
Q ss_pred CEEEEEeCC-------CCEEEEECCCccccceEEeeeccCCCCccEEEEEECCCCCeEEEEeC------CCcEEEEeCCC
Q 048012 264 ETILTSSED-------GSLRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWDCDGKCIAGGIG------DGSIQVWNLKP 330 (616)
Q Consensus 264 ~~l~s~s~D-------g~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~g~~------dg~I~iwd~~~ 330 (616)
.+++.|+.+ ..+.+||+.+..-.. ..... ..+....++. .++++++.|+. -..+.+||+.+
T Consensus 111 ~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~--~~~~p--~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~yd~~~ 184 (318)
T 2woz_A 111 KIYVVAGKDLQTEASLDSVLCYDPVAAKWSE--VKNLP--IKVYGHNVIS--HNGMIYCLGGKTDDKKCTNRVFIYNPKK 184 (318)
T ss_dssp EEEEEEEEBTTTCCEEEEEEEEETTTTEEEE--ECCCS--SCEESCEEEE--ETTEEEEECCEESSSCBCCCEEEEETTT
T ss_pred EEEEEcCccCCCCcccceEEEEeCCCCCEeE--CCCCC--CcccccEEEE--ECCEEEEEcCCCCCCCccceEEEEcCCC
Confidence 577777754 247788887643221 11110 1111112222 35677777764 23589999887
Q ss_pred CCCCCCceeeecCCCCCeEEEEEcCCCCeEEEEecCC-----cEEEEeCCCCCCcceEecCCCCCCcceeEEECCCCCEE
Q 048012 331 GWGSRPDIHVEKGHSDDITALKFSSDGRILLSRSFDG-----SLKVWDLRKMKEPLKVFEDLPNNYAQTNVAFSPDEQLF 405 (616)
Q Consensus 331 ~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg-----~v~lwd~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l 405 (616)
. ....+..+........++.+ ++++++.|+.++ .+.+||+.+.. ...+...+....-.++ ..-+++++
T Consensus 185 ~--~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~--W~~~~~~p~~r~~~~~-~~~~~~i~ 257 (318)
T 2woz_A 185 G--DWKDLAPMKTPRSMFGVAIH--KGKIVIAGGVTEDGLSASVEAFDLKTNK--WEVMTEFPQERSSISL-VSLAGSLY 257 (318)
T ss_dssp T--EEEEECCCSSCCBSCEEEEE--TTEEEEEEEEETTEEEEEEEEEETTTCC--EEECCCCSSCCBSCEE-EEETTEEE
T ss_pred C--EEEECCCCCCCcccceEEEE--CCEEEEEcCcCCCCccceEEEEECCCCe--EEECCCCCCcccceEE-EEECCEEE
Confidence 5 11222212111111222333 577788877543 47788987643 2222222221111122 22356777
Q ss_pred EEeeccccc-------cCCCceEEEEeCCCCceE
Q 048012 406 LTGTSVERE-------STTGGLLCFYDREKLELV 432 (616)
Q Consensus 406 ~~gs~~~~~-------~~~dg~i~iwd~~~~~~~ 432 (616)
+.|+..... ...-..|.+||+.+.+-.
T Consensus 258 v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~ 291 (318)
T 2woz_A 258 AIGGFAMIQLESKEFAPTEVNDIWKYEDDKKEWA 291 (318)
T ss_dssp EECCBCCBC----CCBCCBCCCEEEEETTTTEEE
T ss_pred EECCeeccCCCCceeccceeeeEEEEeCCCCEeh
Confidence 777632110 011356888888776543
No 339
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=95.10 E-value=4.8 Score=43.88 Aligned_cols=250 Identities=14% Similarity=0.072 Sum_probs=127.6
Q ss_pred eEEEE-ecCCCCeEEEEeC-C----CeEEEEECCCCeeeeEeeCceeEeecc-cCCC---cccceEEEEEcCCCCCEEEE
Q 048012 199 VRNLS-WSPTSDRFLCVTG-S----AQAKIYDRDGLTLGEFVKGDMYIRDLK-NTKG---HICGLTCGEWHPKTKETILT 268 (616)
Q Consensus 199 v~~l~-~sp~g~~l~~~s~-d----~~v~vwd~~~~~~~~~~~~~~~~~~~~-~~~~---h~~~v~~~~~~p~~~~~l~s 268 (616)
...+. ++|++++++.+-. . ..++++|+.+++... .. +. ..++ -......++|..++ .++++
T Consensus 131 ~~g~~~~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~---~~-----~~~~~k~~~~~~~~~~~~~W~d~~-~~~~~ 201 (711)
T 4hvt_A 131 YRGVSNCFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVK---NG-----FEPITNSGKLLEGKFTYPTWINKD-TIIFN 201 (711)
T ss_dssp EEEEEECSSSTTEEEEEEEETTCSEEEEEEEETTTTEECT---TC-----SCCBCTTCCBCCEETCCEEEEETT-EEEEC
T ss_pred EeceeecCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCC---CC-----cccccccccccccccceeeEECCC-EEEEE
Confidence 44555 8999998776432 2 479999999887421 00 00 0000 00012334665332 23332
Q ss_pred E----------eCCCCEEEEECCCccccceEEeeeccCCCCccEEEEEECCCCCe-----EEEEeCC---CcEEEEeCCC
Q 048012 269 S----------SEDGSLRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWDCDGKC-----IAGGIGD---GSIQVWNLKP 330 (616)
Q Consensus 269 ~----------s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~-----l~~g~~d---g~I~iwd~~~ 330 (616)
. +....|+.|.+-+......++..... .. .......+.++++ +++.+.+ ..+++.+...
T Consensus 202 ~~~~~~~~~~~~~~~~v~~~~~Gt~~~~~~~v~~~~~--~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 278 (711)
T 4hvt_A 202 LVLHKNEITSSLYPNSLYIWKRGESIEKAKKLFEVPK--EY-IYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKY 278 (711)
T ss_dssp CCCSTTCBCTTSSBCEEEEEETTSCGGGCEEEEECCT--TS-CEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSS
T ss_pred eCCCCCCcCcCCCCCEEEEEECCCChHHCeEEeccCC--Cc-eEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCC
Confidence 1 12356889988765444443332211 12 2334556666662 4433322 4566667653
Q ss_pred CCCCCCceeeecCCCCCeEEEEEcCCCCeEEEE----------ecCCcEEEEeCCCCC------CcceEecCCCCCCcce
Q 048012 331 GWGSRPDIHVEKGHSDDITALKFSSDGRILLSR----------SFDGSLKVWDLRKMK------EPLKVFEDLPNNYAQT 394 (616)
Q Consensus 331 ~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~----------s~Dg~v~lwd~~~~~------~~~~~~~~~~~~~~v~ 394 (616)
.. .. +..+..... ..+..+.++.+++.. ...+.|.+.|+.+.. ...+.+-.......+.
T Consensus 279 ~~--~~-~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 353 (711)
T 4hvt_A 279 KN--LK-LQKINMPSD--ATLQGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTANEVFN 353 (711)
T ss_dssp SS--CE-EEECCSCTT--CEEEEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTEEEE
T ss_pred CC--Cc-ceEeecCCc--ceEeeeECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCCCCeEE
Confidence 21 11 122221111 123344566665533 136779999987631 2233322233344577
Q ss_pred eEEECCCCCEEEEeeccccccCCCc--eEEEEeCCCCc-eEEE-EecCCCCCeEEEEEcCCCCcEEEEeccCCCCceEEE
Q 048012 395 NVAFSPDEQLFLTGTSVERESTTGG--LLCFYDREKLE-LVSR-VGISPACSVVQCAWHPKLNQIFATAGDKSQGGTHIL 470 (616)
Q Consensus 395 ~v~fspdg~~l~~gs~~~~~~~~dg--~i~iwd~~~~~-~~~~-~~~~~~~~v~~~~~~p~~~~l~~~~~d~~~~~~~~v 470 (616)
.+.|..+ .++++.. .++ .|.++++.+++ .+.. +.++..+.+..+.+.+++..++........-..+..
T Consensus 354 ~~~~~~~-~l~~~~~-------~~~~~~l~~~~~~~g~~~~~~~i~lp~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~ 425 (711)
T 4hvt_A 354 FISTTKD-RVFLATY-------DNVVAKVVTFTLENEQWTKPVVLKLPYQNAIFGMSSYEEEEEALITIENSIVPPTIYL 425 (711)
T ss_dssp EEEECSS-CEEEEEE-------ETTEEEEEEECEETTEECCCEEECCCSTTCEEEEECCTTCSCEEEEEECSSSCCEEEE
T ss_pred EEEEECC-EEEEEEE-------ECCEEEEEEEECCCCceEEEeccCCCCCeEEEEEeecCcCCEEEEEEecCCCCCEEEE
Confidence 8888876 4555554 344 57888877765 2334 544434567777777887777766554333445555
Q ss_pred ecc
Q 048012 471 YDP 473 (616)
Q Consensus 471 ~~~ 473 (616)
+++
T Consensus 426 ~d~ 428 (711)
T 4hvt_A 426 WVK 428 (711)
T ss_dssp ECT
T ss_pred EeC
Confidence 554
No 340
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=95.02 E-value=2.9 Score=40.80 Aligned_cols=211 Identities=11% Similarity=0.037 Sum_probs=109.2
Q ss_pred CEEEEEEcCCcEEEEeCCCCcccc---ccceecCCCCCCceEEEEecCCCCeEEEEeCCCeEEEEECCCCeeeeEeeCce
Q 048012 162 SRVLSGSYDYTVRMYDFQGMNSRL---QSFRQLEPSEGHQVRNLSWSPTSDRFLCVTGSAQAKIYDRDGLTLGEFVKGDM 238 (616)
Q Consensus 162 ~~lasgs~Dg~i~iwd~~~~~~~~---~~~~~~~~~~~~~v~~l~~sp~g~~l~~~s~d~~v~vwd~~~~~~~~~~~~~~ 238 (616)
..+++.+.+|.|+--.+....... .........++..+..+......+.|+..+..|.++-................
T Consensus 4 ~v~v~ls~~GyiKr~~~~~y~~~~rgg~g~~~~~~ke~D~~~~~~~~~t~d~ll~fT~~Gr~y~~~~~~lp~~~r~~~G~ 83 (327)
T 3uc1_A 4 DVVVTITETGYAKRTKTDLYRSQKRGGKGVQGAGLKQDDIVAHFFVCSTHDLILFFTTQGRVYRAKAYDLPEASRTARGQ 83 (327)
T ss_dssp EEEEEEETTSEEEEEEHHHHHHHC--------CCCCGGGCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCSSSCCE
T ss_pred cEEEEEeCCCEEEEeeHHHhhhcccCCCCccccccCCCCEEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCcCCCccCCCE
Confidence 467788888888866533210000 00111111223345555555666778878888876655532111000000011
Q ss_pred eEeecccCCCcccceEEEEEcCC--CCCEEEEEeCCCCEEEEECCCccccce--EEeeeccCCCCccEEEEEECCCCCeE
Q 048012 239 YIRDLKNTKGHICGLTCGEWHPK--TKETILTSSEDGSLRIWDVNEFKSQKQ--VIKPKLARPGRVAVTTCAWDCDGKCI 314 (616)
Q Consensus 239 ~~~~~~~~~~h~~~v~~~~~~p~--~~~~l~s~s~Dg~v~iwd~~~~~~~~~--~~~~~~~~~~~~~v~~~~~sp~g~~l 314 (616)
.+..+..+.. ...|..+....+ ...+++..+.+|.|+-..+........ ..... ...+. .+..+........|
T Consensus 84 ~i~~~l~l~~-~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~-lke~D-~lv~~~~~~~~d~i 160 (327)
T 3uc1_A 84 HVANLLAFQP-EERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVN-LRDND-ELVGAVLCSAGDDL 160 (327)
T ss_dssp EHHHHTTCCT-TCCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGCCCCSSCEESCB-CCTTC-CEEEEEEECTTCEE
T ss_pred EHHHccCCCC-CCEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhhccccCceEEEE-ECCCC-EEEEEEEecCCCEE
Confidence 1111222222 233444433221 235899999999999988765443221 11111 11222 34444444455678
Q ss_pred EEEeCCCcEEEEeCC--CCCC-CC----CceeeecCCCCCeEEEEEcCCCCeEEEEecCCcEEEEeCCC
Q 048012 315 AGGIGDGSIQVWNLK--PGWG-SR----PDIHVEKGHSDDITALKFSSDGRILLSRSFDGSLKVWDLRK 376 (616)
Q Consensus 315 ~~g~~dg~I~iwd~~--~~~~-~~----~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~v~lwd~~~ 376 (616)
+..+..|.+..+... .-.. .+ .....+ .....|.++...+++.+|+..+..|.++.-.+..
T Consensus 161 ll~T~~G~~~rf~~~~~eip~~gr~a~Gv~~i~L-~~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e 228 (327)
T 3uc1_A 161 LLVSANGQSIRFSATDEALRPMGRATSGVQGMRF-NIDDRLLSLNVVREGTYLLVATSGGYAKRTAIEE 228 (327)
T ss_dssp EEEETTSEEEEEECCTTTSCCCCTTSBCEESSCC-CTTCCEEEEEECCTTCEEEEEETTSEEEEEEGGG
T ss_pred EEEECCCeEEEEECcccccCcCCcCCCCeeeecC-CCCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHH
Confidence 888889999888776 2100 00 001112 2234577777666677899999999999887654
No 341
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=94.82 E-value=6.1 Score=43.57 Aligned_cols=279 Identities=11% Similarity=0.067 Sum_probs=147.1
Q ss_pred ccEEEEEECCCCCEEEEEEcCCcEEEEeCCCCcc-cccccee---cCCCCCCceEEEEecCCCCeEEEEeCCCeEEEEEC
Q 048012 150 KIVSALAVDHSGSRVLSGSYDYTVRMYDFQGMNS-RLQSFRQ---LEPSEGHQVRNLSWSPTSDRFLCVTGSAQAKIYDR 225 (616)
Q Consensus 150 ~~V~~v~~sp~g~~lasgs~Dg~i~iwd~~~~~~-~~~~~~~---~~~~~~~~v~~l~~sp~g~~l~~~s~d~~v~vwd~ 225 (616)
..|.++..+.+|.+.+. ..+| +..++...... ....+.. ........|.++.-..+|.. .+|+ ++-+..|+.
T Consensus 324 ~~v~~i~~D~~g~lWiG-t~~G-l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~l-Wigt-~~GL~~~~~ 399 (758)
T 3ott_A 324 NQFYSLFRDSKGFYWFG-GANG-LIRFTDPAGERHDAIWYRMGDKTYPLSHNRIRHIYEDKEQQL-WIAT-DGSINRYDY 399 (758)
T ss_dssp CBEEEEEECTTCCEEEE-ETTE-EEEESCTTSSCCCCEEECTTCSSSCCSCSCEEEEEECTTSCE-EEEE-TTEEEEEET
T ss_pred ceEEEEEEcCCCCEEEe-eCCc-ceeecccccccceeEEeccCCcCCCCCCCceEEEEECCCCCE-EEEe-CCcHhhcCc
Confidence 46899988888876554 4555 55555433110 1111110 01122345889988887764 4466 457889998
Q ss_pred CCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEEEECCCccc--cceEE---e-eeccCCCC
Q 048012 226 DGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKS--QKQVI---K-PKLARPGR 299 (616)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~--~~~~~---~-~~~~~~~~ 299 (616)
.+..+..+.... . ........|.++....++ .|..|+..+-|.++|..+... ...+. . .....-..
T Consensus 400 ~~~~~~~~~~~~-----~-~~~~~~~~v~~i~~d~~g--~lWigT~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 471 (758)
T 3ott_A 400 ATRQFIHYNIVD-----N-TGTYNTNWTYYIFEDTAG--QLWISTCLGGIFVVDKHKLMQSTSGQYIAEQNYSVHNGLSG 471 (758)
T ss_dssp TTTEEEEEEEEC-----C-C--CBSSSEEEEEECTTS--EEEEEESSSCEEEEEHHHHHHCCSSEEECSEEECGGGTCSC
T ss_pred CCCcEEEeecCC-----C-cCCCCCceEEEEEEcCCC--CEEEEECCCceEEEccccccccCCcceeccccccccccccc
Confidence 877654432100 0 000123457777776654 566677666688888542100 01111 0 00111112
Q ss_pred ccEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCCCCCceeeecC----CCCCeEEEEEcCCCCeEEEEecCCcEEEEeCC
Q 048012 300 VAVTTCAWDCDGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKG----HSDDITALKFSSDGRILLSRSFDGSLKVWDLR 375 (616)
Q Consensus 300 ~~v~~~~~sp~g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~----h~~~V~~l~~spdg~~l~s~s~Dg~v~lwd~~ 375 (616)
..|.++....+|++-+.++..+-|..||..++ .+..+.. ....+.++....+|++.+. +.. -|..||..
T Consensus 472 ~~i~~i~~d~~g~lWi~~~t~~Gl~~~d~~~~-----~~~~~~~~~~~~~~~~~~i~~d~~g~lWig-t~~-Gl~~~~~~ 544 (758)
T 3ott_A 472 MFINQIIPDNEGNVWVLLYNNKGIDKINPRTR-----EVTKLFADELTGEKSPNYLLCDEDGLLWVG-FHG-GVMRINPK 544 (758)
T ss_dssp SCEEEEEECTTSCEEEEETTCSSEEEEETTTT-----EEEEECTTTSCGGGCEEEEEECTTSCEEEE-ETT-EEEEECC-
T ss_pred ceeeeEEEcCCCCEEEEccCCCCcEEEeCCCC-----ceEEecCCCcCCCcccceEEECCCCCEEEE-ecC-ceEEEecC
Confidence 25889999999987664444455888998754 2222211 1245788888888876654 444 48888876
Q ss_pred CCCCcceEecCCCCCCcceeEEECCCCCEEEEeeccccccCCCceEEEEeCCCCceEEEEecCCCCCeEEEEEcCCCCcE
Q 048012 376 KMKEPLKVFEDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREKLELVSRVGISPACSVVQCAWHPKLNQI 455 (616)
Q Consensus 376 ~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l 455 (616)
+..........++. ..|.++... +|.+ ..++ ..| |..||..+.+... +.. ....+..+.+......|
T Consensus 545 ~~~~~~~~~~gl~~-~~i~~i~~~-~g~l-Wi~t-------~~G-l~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~G~l 611 (758)
T 3ott_A 545 DESQQSISFGSFSN-NEILSMTCV-KNSI-WVST-------TNG-LWIIDRKTMDARQ-QNM-TNKRFTSLLFDPKEDCV 611 (758)
T ss_dssp -CCCCBCCCCC----CCEEEEEEE-TTEE-EEEE-------SSC-EEEEETTTCCEEE-C---CCCCCSEEEEETTTTEE
T ss_pred CCceEEecccCCCc-cceEEEEEC-CCCE-EEEC-------CCC-eEEEcCCCceeEE-ecC-CCCceeeeEEECCCCcE
Confidence 53321111122222 337777664 5554 4444 455 6788888765432 222 12233344555444566
Q ss_pred EEEec
Q 048012 456 FATAG 460 (616)
Q Consensus 456 ~~~~~ 460 (616)
+.|+.
T Consensus 612 ~fG~~ 616 (758)
T 3ott_A 612 YLGGA 616 (758)
T ss_dssp EEECB
T ss_pred EEecC
Confidence 66665
No 342
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=94.65 E-value=0.92 Score=49.66 Aligned_cols=203 Identities=10% Similarity=0.044 Sum_probs=98.3
Q ss_pred CCCCEEEEEEcC----CcEEEEeCCCCccccccce-ec----CCCCCCceEEEEecCCCCeEEEEeCC------CeEEEE
Q 048012 159 HSGSRVLSGSYD----YTVRMYDFQGMNSRLQSFR-QL----EPSEGHQVRNLSWSPTSDRFLCVTGS------AQAKIY 223 (616)
Q Consensus 159 p~g~~lasgs~D----g~i~iwd~~~~~~~~~~~~-~~----~~~~~~~v~~l~~sp~g~~l~~~s~d------~~v~vw 223 (616)
-++.+++.||.+ ..+.+||..+.. ..... .. .+........+.+..++..++.|+.+ ..+.+|
T Consensus 396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~--W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~y 473 (695)
T 2zwa_A 396 AGNDVFYMGGSNPYRVNEILQLSIHYDK--IDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIF 473 (695)
T ss_dssp CSSCEEEECCBSSSBCCCEEEEEECSSC--EEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEE
T ss_pred ECCEEEEECCCCCCCcCcEEEEECCCCe--EEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEE
Confidence 456788888754 457888876532 11111 10 01111112223332256666666543 367888
Q ss_pred ECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCC--CEEEEECCCccccceEEeee-ccCCCCc
Q 048012 224 DRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDG--SLRIWDVNEFKSQKQVIKPK-LARPGRV 300 (616)
Q Consensus 224 d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg--~v~iwd~~~~~~~~~~~~~~-~~~~~~~ 300 (616)
|......... ..+......-.++.+. ++ .+++.|+.++ .+.+||+.+..-. ..... .....+.
T Consensus 474 d~~t~~W~~~----------~~~p~~R~~h~~~~~~-~~-~iyv~GG~~~~~~v~~yd~~t~~W~--~~~~~g~~p~~r~ 539 (695)
T 2zwa_A 474 DMKTREWSMI----------KSLSHTRFRHSACSLP-DG-NVLILGGVTEGPAMLLYNVTEEIFK--DVTPKDEFFQNSL 539 (695)
T ss_dssp ETTTTEEEEC----------CCCSBCCBSCEEEECT-TS-CEEEECCBCSSCSEEEEETTTTEEE--ECCCSSGGGGSCC
T ss_pred eCCCCcEEEC----------CCCCCCcccceEEEEc-CC-EEEEECCCCCCCCEEEEECCCCceE--EccCCCCCCCccc
Confidence 8887654322 1111111111222222 34 5888887654 6899998764322 11110 0001111
Q ss_pred cEEEEEECCC-CCeEEEEeC--C-----CcEEEEeCCCCCCC----CCceeeecCCCCCeEEEEEcCCCCeEEEEecC--
Q 048012 301 AVTTCAWDCD-GKCIAGGIG--D-----GSIQVWNLKPGWGS----RPDIHVEKGHSDDITALKFSSDGRILLSRSFD-- 366 (616)
Q Consensus 301 ~v~~~~~sp~-g~~l~~g~~--d-----g~I~iwd~~~~~~~----~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~D-- 366 (616)
...++++..+ +++++.|+. + ..|.+||+.+.... ...+.........-.+++...++++++.||.+
T Consensus 540 ~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~iyv~GG~~~~ 619 (695)
T 2zwa_A 540 VSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPS 619 (695)
T ss_dssp BSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTEEEEECCBCSS
T ss_pred ceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCEEEEECCccCC
Confidence 2233555554 677777765 2 35889999876210 01111110011111223333347788888743
Q ss_pred ------CcEEEEeCCCC
Q 048012 367 ------GSLKVWDLRKM 377 (616)
Q Consensus 367 ------g~v~lwd~~~~ 377 (616)
..|.+||+.+.
T Consensus 620 ~~~~~~~~v~~yd~~t~ 636 (695)
T 2zwa_A 620 GLFDRTNSIISLDPLSE 636 (695)
T ss_dssp CCCCTTTSEEEEETTTT
T ss_pred CCCCCCCeEEEEECCCC
Confidence 45899998864
No 343
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=94.55 E-value=7 Score=43.07 Aligned_cols=272 Identities=11% Similarity=0.065 Sum_probs=146.2
Q ss_pred ccEEEEEECCCCCEEEEEEcCCcEEEEeCCCCccccccceec--CCCCCCceEEEEecCCCCeEEEEeCCCeEEEEECCC
Q 048012 150 KIVSALAVDHSGSRVLSGSYDYTVRMYDFQGMNSRLQSFRQL--EPSEGHQVRNLSWSPTSDRFLCVTGSAQAKIYDRDG 227 (616)
Q Consensus 150 ~~V~~v~~sp~g~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~--~~~~~~~v~~l~~sp~g~~l~~~s~d~~v~vwd~~~ 227 (616)
..|.++..+.+|.+.+ |...| |..++..... ...+... .......|.++....++..|.+++. +-+..++..+
T Consensus 146 ~~i~~i~~d~~g~lWi-gt~~G-l~~~~~~~~~--~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~ 220 (758)
T 3ott_A 146 NTIYSIIRTKDNQIYV-GTYNG-LCRYIPSNGK--FEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-GYLFQYFPST 220 (758)
T ss_dssp SCEEEEEECTTCCEEE-EETTE-EEEEETTTTE--EEEECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-EEEEEEETTT
T ss_pred CeEEEEEEcCCCCEEE-EeCCC-HhhCccCCCc--eEEecCCCccccccceeEEEEEECCCCEEEEEEC-CCCeEEcCCC
Confidence 4688988888887665 44444 6677765432 1111100 0011234888888887776676774 4678888876
Q ss_pred CeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEEEECCCccccceEEeeec--cCCCCccEEEE
Q 048012 228 LTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKPKL--ARPGRVAVTTC 305 (616)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~--~~~~~~~v~~~ 305 (616)
..+..+. . + ....|.++....++ .|..|+.+ -|.+++..+... ..+..... ..-....|.++
T Consensus 221 ~~~~~~~-------~---l--~~~~i~~i~~d~~g--~lWigT~~-Gl~~~~~~~~~~-~~~~~~~~~~~~l~~~~i~~i 284 (758)
T 3ott_A 221 GQIKQTE-------A---F--HNNSIKSLALDGNG--DLLAGTDN-GLYVYHNDTTPL-QHIIHDSRNIQSLTNNIIWNI 284 (758)
T ss_dssp TEEEEEE-------E---E--EEEEEEEEEECTTC--CEEEEETT-EEEEECCTTSCC-EEECCCTTCTTSCSCSCEEEE
T ss_pred CeEEecc-------C---C--CCCeEEEEEEcCCC--CEEEEeCC-ceeEEecCCCcE-EEEEcCCCCcCcCCcCeEEEE
Confidence 6543321 0 1 12357787777665 34445544 488888765332 11111100 01112358899
Q ss_pred EECCCCCeEEEEeCCCcEEEEeCCCCCCCCCceeee----cCCCCCeEEEEEcCCCCeEEEEecCCcEEEEeCCCCC-Cc
Q 048012 306 AWDCDGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVE----KGHSDDITALKFSSDGRILLSRSFDGSLKVWDLRKMK-EP 380 (616)
Q Consensus 306 ~~sp~g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~----~~h~~~V~~l~~spdg~~l~s~s~Dg~v~lwd~~~~~-~~ 380 (616)
....+|+ |.+|+..| |.++..... ....... ......|.+|.-..+|++.+. +.+| +..++..+.. ..
T Consensus 285 ~~D~~g~-lWiGT~~G-l~~~~~~~~---~~~~~~~~~~~~~~~~~v~~i~~D~~g~lWiG-t~~G-l~~~~~~~~~~~~ 357 (758)
T 3ott_A 285 FADQEHN-IWLGTDYG-ISLSRYNSA---LQFIPISQITGTGDGNQFYSLFRDSKGFYWFG-GANG-LIRFTDPAGERHD 357 (758)
T ss_dssp EECTTCC-EEEEESSS-EEEECCCC----CEEEEHHHHSCSCCCCBEEEEEECTTCCEEEE-ETTE-EEEESCTTSSCCC
T ss_pred EEcCCCC-EEEEeCCc-ccccccCCc---eeEEecccCCCCCCCceEEEEEEcCCCCEEEe-eCCc-ceeecccccccce
Confidence 8888776 45566667 555543221 0111100 012346889988888876554 4454 6667655321 11
Q ss_pred ceEecC-----CCCCCcceeEEECCCCCEEEEeeccccccCCCceEEEEeCCCCceEEEEecC-----CCCCeEEEEEcC
Q 048012 381 LKVFED-----LPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREKLELVSRVGIS-----PACSVVQCAWHP 450 (616)
Q Consensus 381 ~~~~~~-----~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~~~~~~~~~~~-----~~~~v~~~~~~p 450 (616)
...+.. .-....|.++.-..+|.+.+ |+ .+ -|..||..+++...-.... ....|.++.-..
T Consensus 358 ~~~~~~~~~~~~l~~~~v~~i~~d~~g~lWi-gt-------~~-GL~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~ 428 (758)
T 3ott_A 358 AIWYRMGDKTYPLSHNRIRHIYEDKEQQLWI-AT-------DG-SINRYDYATRQFIHYNIVDNTGTYNTNWTYYIFEDT 428 (758)
T ss_dssp CEEECTTCSSSCCSCSCEEEEEECTTSCEEE-EE-------TT-EEEEEETTTTEEEEEEEECCC--CBSSSEEEEEECT
T ss_pred eEEeccCCcCCCCCCCceEEEEECCCCCEEE-Ee-------CC-cHhhcCcCCCcEEEeecCCCcCCCCCceEEEEEEcC
Confidence 222211 01123478888888887665 44 33 5889998877543321111 123577887777
Q ss_pred CCCcEEEEe
Q 048012 451 KLNQIFATA 459 (616)
Q Consensus 451 ~~~~l~~~~ 459 (616)
++. |.+++
T Consensus 429 ~g~-lWigT 436 (758)
T 3ott_A 429 AGQ-LWIST 436 (758)
T ss_dssp TSE-EEEEE
T ss_pred CCC-EEEEE
Confidence 755 44444
No 344
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=94.54 E-value=4.9 Score=41.29 Aligned_cols=113 Identities=15% Similarity=0.130 Sum_probs=63.5
Q ss_pred eEEEEecCCCC-eEEEEeCCCeEEEEECCCCeeeeEeeCceeEeecccC--C----CcccceEEEEEcCC---CCCEEEE
Q 048012 199 VRNLSWSPTSD-RFLCVTGSAQAKIYDRDGLTLGEFVKGDMYIRDLKNT--K----GHICGLTCGEWHPK---TKETILT 268 (616)
Q Consensus 199 v~~l~~sp~g~-~l~~~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~--~----~h~~~v~~~~~~p~---~~~~l~s 268 (616)
.+.|+|.|+|. +|+++...|.|++++.++...... +..+... . .....+..|+|+|+ +..++++
T Consensus 16 P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~------~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~ 89 (463)
T 2wg3_C 16 PVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEP------YLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVS 89 (463)
T ss_dssp EEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSC------SEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEE
T ss_pred ceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeee------ecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEE
Confidence 67899999996 677788899999998654321100 0111111 1 22567889999996 2234444
Q ss_pred EeC--C----------CCEEEEECCCc-------cccceEEeee-ccCCCCccEEEEEECCCCCeEEEEeC
Q 048012 269 SSE--D----------GSLRIWDVNEF-------KSQKQVIKPK-LARPGRVAVTTCAWDCDGKCIAGGIG 319 (616)
Q Consensus 269 ~s~--D----------g~v~iwd~~~~-------~~~~~~~~~~-~~~~~~~~v~~~~~sp~g~~l~~g~~ 319 (616)
-+. + ..|.-|.+... .....++... ....| ....|+|.|||.+.++.+.
T Consensus 90 yt~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H--~g~~l~fgpDG~LYv~~Gd 158 (463)
T 2wg3_C 90 YTTNQERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKH--LGGQLLFGPDGFLYIILGD 158 (463)
T ss_dssp EEECCCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSS--CEEEEEECTTSCEEEEECC
T ss_pred EeCCCCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcc--cCCcEeECCCCcEEEEeCC
Confidence 332 1 13444555421 1112222211 12223 4688999999987776554
No 345
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=94.32 E-value=2 Score=41.49 Aligned_cols=147 Identities=12% Similarity=0.134 Sum_probs=71.3
Q ss_pred CCCeEEEEeCC-------CeEEEEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeC------CC
Q 048012 207 TSDRFLCVTGS-------AQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSE------DG 273 (616)
Q Consensus 207 ~g~~l~~~s~d-------~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~------Dg 273 (616)
++..++.|+.+ ..+.+||..+......... .....+|. ++.+ ++ .+++.|+. -.
T Consensus 109 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~------p~~r~~~~----~~~~--~~-~iyv~GG~~~~~~~~~ 175 (318)
T 2woz_A 109 DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNL------PIKVYGHN----VISH--NG-MIYCLGGKTDDKKCTN 175 (318)
T ss_dssp TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCC------SSCEESCE----EEEE--TT-EEEEECCEESSSCBCC
T ss_pred CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCC------CCcccccE----EEEE--CC-EEEEEcCCCCCCCccc
Confidence 45566666643 3578888887664332110 00112222 2222 23 46666654 23
Q ss_pred CEEEEECCCccccceEEeeeccCCCCccEEEEEECCCCCeEEEEeCC-----CcEEEEeCCCCCCCCCceeeecCCCCCe
Q 048012 274 SLRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWDCDGKCIAGGIGD-----GSIQVWNLKPGWGSRPDIHVEKGHSDDI 348 (616)
Q Consensus 274 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~g~~d-----g~I~iwd~~~~~~~~~~~~~~~~h~~~V 348 (616)
.+.+||+.+..-.. ..... ..+....++.+ ++++++.|+.+ ..|.+||+.+. ....+..+.......
T Consensus 176 ~~~~yd~~~~~W~~--~~~~p--~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~--~W~~~~~~p~~r~~~ 247 (318)
T 2woz_A 176 RVFIYNPKKGDWKD--LAPMK--TPRSMFGVAIH--KGKIVIAGGVTEDGLSASVEAFDLKTN--KWEVMTEFPQERSSI 247 (318)
T ss_dssp CEEEEETTTTEEEE--ECCCS--SCCBSCEEEEE--TTEEEEEEEEETTEEEEEEEEEETTTC--CEEECCCCSSCCBSC
T ss_pred eEEEEcCCCCEEEE--CCCCC--CCcccceEEEE--CCEEEEEcCcCCCCccceEEEEECCCC--eEEECCCCCCcccce
Confidence 58999987653221 11111 11112223333 56777777653 35778998865 222222222111122
Q ss_pred EEEEEcCCCCeEEEEecC--------------CcEEEEeCCC
Q 048012 349 TALKFSSDGRILLSRSFD--------------GSLKVWDLRK 376 (616)
Q Consensus 349 ~~l~~spdg~~l~s~s~D--------------g~v~lwd~~~ 376 (616)
..+.+ ++++++.|+.+ ..+.+||+.+
T Consensus 248 ~~~~~--~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~ 287 (318)
T 2woz_A 248 SLVSL--AGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDK 287 (318)
T ss_dssp EEEEE--TTEEEEECCBCCBC----CCBCCBCCCEEEEETTT
T ss_pred EEEEE--CCEEEEECCeeccCCCCceeccceeeeEEEEeCCC
Confidence 22332 56777777754 2466777764
No 346
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=94.19 E-value=1.8 Score=42.66 Aligned_cols=53 Identities=9% Similarity=-0.011 Sum_probs=27.0
Q ss_pred cEEEEeCCCCCCCCCceeeecCCCCCeEEEEEcCCCCeEEEEecCC------cEEEEeCCCCC
Q 048012 322 SIQVWNLKPGWGSRPDIHVEKGHSDDITALKFSSDGRILLSRSFDG------SLKVWDLRKMK 378 (616)
Q Consensus 322 ~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg------~v~lwd~~~~~ 378 (616)
.+.+||+.+. ....+..+......-.++. -++++++.|+.++ .|.+++++..+
T Consensus 286 ~~~~yd~~~~--~W~~~~~~p~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~~v~~l~~~~~~ 344 (357)
T 2uvk_A 286 STDIHLWHNG--KWDKSGELSQGRAYGVSLP--WNNSLLIIGGETAGGKAVTDSVLITVKDNK 344 (357)
T ss_dssp CCEEEECC-----CEEEEECSSCCBSSEEEE--ETTEEEEEEEECGGGCEEEEEEEEEC-CCS
T ss_pred eEEEEecCCC--ceeeCCCCCCCcccceeEE--eCCEEEEEeeeCCCCCEeeeEEEEEEcCcE
Confidence 5789998875 2233333322222222333 3678888888653 35556777543
No 347
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=93.99 E-value=4.6 Score=38.83 Aligned_cols=204 Identities=8% Similarity=0.028 Sum_probs=107.1
Q ss_pred EEEecCCCCeEEEEeCC--------------CeEEEEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEE
Q 048012 201 NLSWSPTSDRFLCVTGS--------------AQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETI 266 (616)
Q Consensus 201 ~l~~sp~g~~l~~~s~d--------------~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l 266 (616)
+--|+++|++|..+... ..|+..++++.....+. .. .+..|++++. .|
T Consensus 57 ~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~l~----------~~-------~~~~~s~~g~-~I 118 (302)
T 3s25_A 57 AMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTVLD----------PD-------PCIYASLIGN-YI 118 (302)
T ss_dssp EEEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEEEE----------CS-------CEEEEEEETT-EE
T ss_pred eeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceEee----------cC-------CccEEEEeCC-EE
Confidence 34567888888877653 36777777766532221 00 1225666675 44
Q ss_pred EEEe----CCCCEEEEECCCccccceEEeeeccCCCCccEEEEEECCCCCeEEEEeC-CCcEEEEeCCCCCCCCCceeee
Q 048012 267 LTSS----EDGSLRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWDCDGKCIAGGIG-DGSIQVWNLKPGWGSRPDIHVE 341 (616)
Q Consensus 267 ~s~s----~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~g~~-dg~I~iwd~~~~~~~~~~~~~~ 341 (616)
+-.. ....|...++... ....+... .+ .+|+++++.|+-.+. ...|.+.++..+ . .....
T Consensus 119 y~~~~~~~~~~~Iy~~~~dGs-~~~~lt~~--------~~--~~~~~~g~~iy~t~~g~~~Iy~~~l~g~--~--~~~l~ 183 (302)
T 3s25_A 119 YYLHYDTQTATSLYRIRIDGE-EKKKIKNH--------YL--FTCNTSDRYFYYNNPKNGQLYRYDTASQ--S--EALFY 183 (302)
T ss_dssp EEEEESSSSCEEEEEEETTSC-CCEEEESS--------CC--CCSEEETTEEEEECTTTCCEEEEETTTT--E--EEEEE
T ss_pred EEEeecCCCCceEEEEECCCC-CeEEEeCC--------Cc--eEeeEECCEEEEEeCCCceEEEEECCCC--C--EEEEe
Confidence 4443 3344555555432 22222211 11 345677887776654 567888887764 1 11222
Q ss_pred cCCCCCeEEEEEcCCCCeEEEEecCC--cEEEEeCCCCCCcceEecCCCCCCcceeEEECCCCCEEEEeeccccccCCCc
Q 048012 342 KGHSDDITALKFSSDGRILLSRSFDG--SLKVWDLRKMKEPLKVFEDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGG 419 (616)
Q Consensus 342 ~~h~~~V~~l~~spdg~~l~s~s~Dg--~v~lwd~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg 419 (616)
. +... +.++|++.+|+-....+ .|..-++.... ...+.. ..+ ..|+|++.+|+.+.. ...+
T Consensus 184 ~---~~~~-~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~--~~~Lt~----~~~--~~~~~~g~~Iy~~~~-----~~~~ 246 (302)
T 3s25_A 184 D---CNCY-KPVVLDDTNVYYMDVNRDNAIVHVNINNPN--PVVLTE----ANI--EHYNVYGSLIFYQRG-----GDNP 246 (302)
T ss_dssp C---SCEE-EEEEEETTEEEEEEGGGTTEEEEECSSSCC--CEECSC----SCE--EEEEEETTEEEEEEC-----SSSC
T ss_pred C---CCcc-ceeeecCCEEEEEEcCCCcEEEEEECCCCC--eEEEeC----CCc--ceEEECCCEEEEEEC-----CCCc
Confidence 2 2222 34668888888766443 45555555322 333322 112 458889999887641 1346
Q ss_pred eEEEEeCCCCceEEEEecCCCCCeEEEEEcCCCCcEEEEec
Q 048012 420 LLCFYDREKLELVSRVGISPACSVVQCAWHPKLNQIFATAG 460 (616)
Q Consensus 420 ~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~ 460 (616)
.|..-++..... +++... .+. .+++.+.+|+.+..
T Consensus 247 ~i~~~~~DG~~r-~~l~~~---~~~--~i~i~~d~Iy~td~ 281 (302)
T 3s25_A 247 ALCVVKNDGTGF-KELAKG---EFC--NINVTSQYVYFTDF 281 (302)
T ss_dssp EEEEEETTSCCC-EEEEES---CEE--EEEECSSEEEEEET
T ss_pred EEEEEECCCCcc-EEeeCC---ccc--eEEEeCCEEEEEEC
Confidence 777777654432 333221 233 34445566666654
No 348
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=93.63 E-value=2.1 Score=46.85 Aligned_cols=212 Identities=12% Similarity=0.055 Sum_probs=101.7
Q ss_pred CCCeEEEEeCC----CeEEEEECCCCeeeeEe-eCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCC------CCE
Q 048012 207 TSDRFLCVTGS----AQAKIYDRDGLTLGEFV-KGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSED------GSL 275 (616)
Q Consensus 207 ~g~~l~~~s~d----~~v~vwd~~~~~~~~~~-~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~D------g~v 275 (616)
++..++.|+.+ ..+.+||.......... ... ...+......-..+.+..++ .+++.|+.+ ..+
T Consensus 397 ~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p-----~~~~p~~R~~hs~~~~~~~~-~lyv~GG~~~~~~~~~dv 470 (695)
T 2zwa_A 397 GNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVS-----SSEVPVARMCHTFTTISRNN-QLLLIGGRKAPHQGLSDN 470 (695)
T ss_dssp SSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCC-----CSCCCCCCBSCEEEEETTTT-EEEEECCBSSTTCBCCCC
T ss_pred CCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCC-----CCCCCccccceEEEEEccCC-EEEEEcCCCCCCCccccE
Confidence 44555555532 46788887766543332 100 00011111111222332134 477777644 347
Q ss_pred EEEECCCccccceEEeeeccCCCCccEEEEEECCCCCeEEEEeCCC--cEEEEeCCCCCCCCCceee---ecCCCCCeEE
Q 048012 276 RIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWDCDGKCIAGGIGDG--SIQVWNLKPGWGSRPDIHV---EKGHSDDITA 350 (616)
Q Consensus 276 ~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~g~~dg--~I~iwd~~~~~~~~~~~~~---~~~h~~~V~~ 350 (616)
.+||+.+..-.. .... ...+..-.++ ...++++++.|+.++ .+.+||..+. ....+.. .........+
T Consensus 471 ~~yd~~t~~W~~--~~~~--p~~R~~h~~~-~~~~~~iyv~GG~~~~~~v~~yd~~t~--~W~~~~~~g~~p~~r~~~~a 543 (695)
T 2zwa_A 471 WIFDMKTREWSM--IKSL--SHTRFRHSAC-SLPDGNVLILGGVTEGPAMLLYNVTEE--IFKDVTPKDEFFQNSLVSAG 543 (695)
T ss_dssp EEEETTTTEEEE--CCCC--SBCCBSCEEE-ECTTSCEEEECCBCSSCSEEEEETTTT--EEEECCCSSGGGGSCCBSCE
T ss_pred EEEeCCCCcEEE--CCCC--CCCcccceEE-EEcCCEEEEECCCCCCCCEEEEECCCC--ceEEccCCCCCCCcccceeE
Confidence 888887643211 1111 1111122223 323788888887655 7999998875 1111111 1111122234
Q ss_pred EEEcCC-CCeEEEEec--C-----CcEEEEeCCCCCC--c--ceEecCC--CCCCcceeEEECCCCCEEEEeecccccc-
Q 048012 351 LKFSSD-GRILLSRSF--D-----GSLKVWDLRKMKE--P--LKVFEDL--PNNYAQTNVAFSPDEQLFLTGTSVERES- 415 (616)
Q Consensus 351 l~~spd-g~~l~s~s~--D-----g~v~lwd~~~~~~--~--~~~~~~~--~~~~~v~~v~fspdg~~l~~gs~~~~~~- 415 (616)
+.+..+ +++++.|+. + ..+.+||+.+..- . ...+... ...... +++...++++++.|+......
T Consensus 544 ~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~-~~~~~~~~~iyv~GG~~~~~~~ 622 (695)
T 2zwa_A 544 LEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGS-QIKYITPRKLLIVGGTSPSGLF 622 (695)
T ss_dssp EEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSC-EEEEEETTEEEEECCBCSSCCC
T ss_pred EEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccc-eEEEeCCCEEEEECCccCCCCC
Confidence 555554 677777776 2 3588999886541 0 1111111 111112 233333377777776321100
Q ss_pred CCCceEEEEeCCCCceE
Q 048012 416 TTGGLLCFYDREKLELV 432 (616)
Q Consensus 416 ~~dg~i~iwd~~~~~~~ 432 (616)
.....|.+||+.+.+-.
T Consensus 623 ~~~~~v~~yd~~t~~W~ 639 (695)
T 2zwa_A 623 DRTNSIISLDPLSETLT 639 (695)
T ss_dssp CTTTSEEEEETTTTEEE
T ss_pred CCCCeEEEEECCCCeEE
Confidence 12456899999887654
No 349
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=93.58 E-value=0.3 Score=47.93 Aligned_cols=200 Identities=11% Similarity=-0.006 Sum_probs=97.1
Q ss_pred CeEEEEeCCCeEEEEECCCCee-eeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEE-eCCCCEEEEECCCcccc
Q 048012 209 DRFLCVTGSAQAKIYDRDGLTL-GEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTS-SEDGSLRIWDVNEFKSQ 286 (616)
Q Consensus 209 ~~l~~~s~d~~v~vwd~~~~~~-~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~-s~Dg~v~iwd~~~~~~~ 286 (616)
..+++++.||.|.-+|..++++ +.+... ....+........ +.+...++.. +.||.|..++..++...
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~--~~~p~~~~~~~~~--------~~~~~~~vv~p~~dG~l~a~~~~~G~~~ 80 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPE--NFQPLIEIQEPSR--------LETYETLIIEPFGDGNIYYFNAHQGLQK 80 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGG--GSCCSEECCCSCT--------TTSSEEEEECCSTTTEEEEEETTTEEEE
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCC--ccCCcEEecCCcc--------ccCCcEEEEEECCCCEEEEEECCCCcEE
Confidence 4678899999999999875553 433211 0000000011100 1122233333 58999999998776433
Q ss_pred ceEEeeeccCCCCccEEE---EEE-C----CCCCeEEEEeCCCcEEEEeCCCCCCCCCceeeecCCC--C-----CeEEE
Q 048012 287 KQVIKPKLARPGRVAVTT---CAW-D----CDGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHS--D-----DITAL 351 (616)
Q Consensus 287 ~~~~~~~~~~~~~~~v~~---~~~-s----p~g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~h~--~-----~V~~l 351 (616)
..+....... ..++.. ..+ . ..+..+++|+.+|.+...|+++| ..+..+.... . ...|.
T Consensus 81 ~~~~~~~lv~--~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG----~~~W~~~~~~~~~~~~~~~e~~~ 154 (339)
T 2be1_A 81 LPLSIRQLVS--TSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNG----EIISAFGPGSKNGYFGSQSVDCS 154 (339)
T ss_dssp EEEEHHHHHT--TCSEEEECC----------CCEEEEECEEEEEEEEEETTTC----CEEEEESTTCBCC----------
T ss_pred eeecccccee--ccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCC----cEEEEEecCCCcccccccccccc
Confidence 3222211110 011211 000 0 14567889999999999999988 3444433211 1 01111
Q ss_pred EEc-----CCCCeEEEEecCCcEEEEeCCCCCCcce---EecCCCCCCcc-eeEEECCCCCEEEEeeccccccCCCceEE
Q 048012 352 KFS-----SDGRILLSRSFDGSLKVWDLRKMKEPLK---VFEDLPNNYAQ-TNVAFSPDEQLFLTGTSVERESTTGGLLC 422 (616)
Q Consensus 352 ~~s-----pdg~~l~s~s~Dg~v~lwd~~~~~~~~~---~~~~~~~~~~v-~~v~fspdg~~l~~gs~~~~~~~~dg~i~ 422 (616)
... -.+..|+.+..+..+.+.+ +++..... .+........+ .+-.++.|+.+++ ++ .+|.|.
T Consensus 155 ~~~d~~~d~~~~~v~ig~~~y~v~~~~-~sG~~W~~~~s~~~~~~~~~~~~~~~~~s~Dg~~~~-~~-------~dg~v~ 225 (339)
T 2be1_A 155 PEEKIKLQECENMIVIGKTIFELGIHS-YDGASYNVTYSTWQQNVLDVPLALQNTFSKDGMCIA-PF-------RDKSLL 225 (339)
T ss_dssp ----------CCEEEEEEEEEECEECC-TTSCCCCCEEEEEECCTTTHHHHTTCSSCSSSCCEE-EE-------TTTEEE
T ss_pred cccccccccCCCeEEEecceEEEEEEC-CCCCeEEEecccccccccccccccccccccCCcEEE-EC-------CCCEEE
Confidence 111 1235677777777777766 33321000 01110000000 0011234577755 45 789999
Q ss_pred EEeCCCCceEE
Q 048012 423 FYDREKLELVS 433 (616)
Q Consensus 423 iwd~~~~~~~~ 433 (616)
-+|..+++.+-
T Consensus 226 A~d~~~G~~~W 236 (339)
T 2be1_A 226 ASDLDFRIARW 236 (339)
T ss_dssp EECSTTCCEEE
T ss_pred EEECCCCcEEE
Confidence 99999988765
No 350
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=93.16 E-value=6.4 Score=37.90 Aligned_cols=212 Identities=12% Similarity=0.081 Sum_probs=106.8
Q ss_pred CCCEEEEEEcCCcEEEEeCCCCccccc---cceecCCCCCCceEEEEecCCCCeEEEEeCCCeEEEEECCCCeeeeE-ee
Q 048012 160 SGSRVLSGSYDYTVRMYDFQGMNSRLQ---SFRQLEPSEGHQVRNLSWSPTSDRFLCVTGSAQAKIYDRDGLTLGEF-VK 235 (616)
Q Consensus 160 ~g~~lasgs~Dg~i~iwd~~~~~~~~~---~~~~~~~~~~~~v~~l~~sp~g~~l~~~s~d~~v~vwd~~~~~~~~~-~~ 235 (616)
+..++++.+.+|.|+--.+........ ....+....+..+..+......+.|+..+..|.++-+.......... ..
T Consensus 2 ~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~~ke~D~l~~~~~~~~~~~ll~fT~~G~~~~~~~~elp~~~~~a~ 81 (307)
T 1zi0_A 2 QEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATRGAR 81 (307)
T ss_dssp CCEEEEEEETTSEEEEEECC--------------------CCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCCCCSSSC
T ss_pred CCcEEEEEeCCCEEEEeeHHHhhhhccCCCCceeeeeCCCCEEEEEEEECCCCEEEEEECCCEEEEEEhhHCcCCCCCCC
Confidence 455788889999998776653211100 11111112334455555555667788888888776665432111000 01
Q ss_pred CceeEeecccCCCcccceEEEEEcC--CCCCEEEEEeCCCCEEEEECCCccccc--eEEeeeccCCCCccEEEEEECCCC
Q 048012 236 GDMYIRDLKNTKGHICGLTCGEWHP--KTKETILTSSEDGSLRIWDVNEFKSQK--QVIKPKLARPGRVAVTTCAWDCDG 311 (616)
Q Consensus 236 ~~~~~~~~~~~~~h~~~v~~~~~~p--~~~~~l~s~s~Dg~v~iwd~~~~~~~~--~~~~~~~~~~~~~~v~~~~~sp~g 311 (616)
|. .+..+..+. ....|..+...+ .....++..+..|.++-..+....... .+..... ..+ ..+..+......
T Consensus 82 G~-~i~~~l~l~-~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~r~G~~~i~l-~~~-d~lv~~~~~~~~ 157 (307)
T 1zi0_A 82 GR-PIVNLLPLE-QDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKL-VDG-DELIGVDLTSGE 157 (307)
T ss_dssp CE-EGGGTSCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGTTCCTTCEESSCC-CTT-CCEEEEEEECTT
T ss_pred Ce-EhhhccCCC-CCCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhhccccCCeEEEEE-CCC-CEEEEEEEeCCC
Confidence 11 111111222 222344443321 123578889999999998875433221 1111111 112 244444444445
Q ss_pred CeEEEEeCCCcEEEEeCCCCCCC-C--Cce--eeecCCCCCeEEEEEcCCCCeEEEEecCCcEEEEeCCC
Q 048012 312 KCIAGGIGDGSIQVWNLKPGWGS-R--PDI--HVEKGHSDDITALKFSSDGRILLSRSFDGSLKVWDLRK 376 (616)
Q Consensus 312 ~~l~~g~~dg~I~iwd~~~~~~~-~--~~~--~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~v~lwd~~~ 376 (616)
..|+..+.+|.+..+....-... + .-+ ..+. ....|.++....++..|++.+..|.++-.++..
T Consensus 158 ~~i~l~T~~G~~irf~~~~v~~~gr~a~Gv~~i~L~-~~d~Vv~~~~~~~~~~ll~~T~~G~~Kr~~~~e 226 (307)
T 1zi0_A 158 DEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLG-EGDKVVSLIVPRGDGAILTATQNGYGKRTAVAE 226 (307)
T ss_dssp CEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCC-TTCCEEEEECCCSSCEEEEEETTSEEEEECGGG
T ss_pred CEEEEECCCCcEEEEEHHHcCccCCCCCCeEeEEeC-CCCEEEEEEEecCCCEEEEEEcCCceEEEEHHH
Confidence 57788888999888876431000 0 011 1121 234576766555566788889999999888753
No 351
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=92.81 E-value=8.5 Score=38.38 Aligned_cols=233 Identities=10% Similarity=0.014 Sum_probs=101.2
Q ss_pred CEEEEEEcCCcEEEEeCCCCccccccceecCCCCCCceEEEEecC-CCCeEEEEeCCC----eEEEEECCCCeeeeEeeC
Q 048012 162 SRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSP-TSDRFLCVTGSA----QAKIYDRDGLTLGEFVKG 236 (616)
Q Consensus 162 ~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp-~g~~l~~~s~d~----~v~vwd~~~~~~~~~~~~ 236 (616)
..|..|...| +.+++............. ......|.+|++.| +...|.+++..+ .|...+ ++...+.....
T Consensus 23 g~l~vgt~~G-l~~~~~~~~g~~W~~~~~--~~~~~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s~-D~G~tW~~~~~ 98 (394)
T 3b7f_A 23 VMLLVATIKG-AWFLASDPARRTWELRGP--VFLGHTIHHIVQDPREPERMLMAARTGHLGPTVFRSD-DGGGNWTEATR 98 (394)
T ss_dssp CEEEEEETTE-EEEEEECTTSCSEEEEEE--ESTTSEEEEEEECSSSTTCEEEEEEC--CCEEEEEES-STTSCCEECSB
T ss_pred CEEEEEecCc-eEEEECCCCCCCceECCc--cCCCCceEEEEECCCCCCeEEEEecCCCCCccEEEeC-CCCCCceECCc
Confidence 3666777777 444443221112221111 12345699999998 334455565554 444333 33322221110
Q ss_pred ceeEeecccCCC-----cccceEEEEEcCCC-CCEEEEEeCCCCEEEEECCCccccceEEeeecc--------------C
Q 048012 237 DMYIRDLKNTKG-----HICGLTCGEWHPKT-KETILTSSEDGSLRIWDVNEFKSQKQVIKPKLA--------------R 296 (616)
Q Consensus 237 ~~~~~~~~~~~~-----h~~~v~~~~~~p~~-~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~--------------~ 296 (616)
.. .+....+ +...|.++++.|.+ ...|+.+...+.|...+ .............. .
T Consensus 99 ~~---~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~g~~~ggl~~S~--DgG~tW~~~~~~~~~p~~~~~~~~~~~g~ 173 (394)
T 3b7f_A 99 PP---AFNKAPEGETGRVVDHVFWLTPGHASEPGTWYAGTSPQGLFRST--DHGASWEPVAGFNDHPMRRAWTGGEQDGT 173 (394)
T ss_dssp CC---CCCCCC----CCCCCEEEEEEECCTTSTTCEEEEEETTEEEEES--STTSBCEECHHHHTCTTHHHHHCCC----
T ss_pred cc---cCCCcccccccccccceeEEEeCCCCCCCEEEEEecCCcEEEEc--CCCCCeEECcCccCCccccccccccccCC
Confidence 00 0000000 22357888998742 34555555555554442 22111111110000 0
Q ss_pred CCCccEEEEEECCC-CCeEEEEeCCCcEEEEeCCCCCCCCCceee-ecC-C--------CCCeEEEEEcCC-CCeEEEEe
Q 048012 297 PGRVAVTTCAWDCD-GKCIAGGIGDGSIQVWNLKPGWGSRPDIHV-EKG-H--------SDDITALKFSSD-GRILLSRS 364 (616)
Q Consensus 297 ~~~~~v~~~~~sp~-g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~-~~~-h--------~~~V~~l~~spd-g~~l~s~s 364 (616)
.....+.+|.++|. ...|+++..++.|...+-... ....+.. ... + ...|.+|++.|. ...|+.+.
T Consensus 174 ~~~~~i~~i~~d~~~~~~l~vg~~~ggl~~s~DgG~--tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~ 251 (394)
T 3b7f_A 174 PDGPKMHSILVDPRDPKHLYIGMSSGGVFESTDAGT--DWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQN 251 (394)
T ss_dssp CCCCEEEEEEECTTCTTCEEEEEETBEEEEESSTTS--SCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEE
T ss_pred CCCCceeEEEECCCCCCEEEEEECCCCEEEECCCCC--CceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEc
Confidence 11235789999883 455566655555554432211 1111100 000 0 134889999985 35666665
Q ss_pred cCCcEEEEeCCCCCCcceEecC-CCCC--CcceeEEECCC-CCEEEEe
Q 048012 365 FDGSLKVWDLRKMKEPLKVFED-LPNN--YAQTNVAFSPD-EQLFLTG 408 (616)
Q Consensus 365 ~Dg~v~lwd~~~~~~~~~~~~~-~~~~--~~v~~v~fspd-g~~l~~g 408 (616)
..+ |...+ ........+.. ++.. ..+.+++++|. ...|.++
T Consensus 252 ~~g-l~~s~--D~G~tW~~~~~~l~~~~~~~~~~i~~~p~~~~~l~~~ 296 (394)
T 3b7f_A 252 HCG-IYRMD--RREGVWKRIGDAMPREVGDIGFPIVVHQRDPRTVWVF 296 (394)
T ss_dssp TTE-EEEEE--TTTTEEECGGGGSCTTTCSCEEEEEECSSCTTCEEEE
T ss_pred CCe-EEEeC--CCCCcceECCCCCCCCCccceEEEEECCCCCCEEEEE
Confidence 444 44433 22221222211 2220 22467888763 3444444
No 352
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=92.49 E-value=11 Score=38.74 Aligned_cols=58 Identities=14% Similarity=0.158 Sum_probs=35.8
Q ss_pred ccEEEEEECCCCC-EEEEEEcCCcEEEEeCCCCcc--ccccceecCC-----CCCCceEEEEecCC
Q 048012 150 KIVSALAVDHSGS-RVLSGSYDYTVRMYDFQGMNS--RLQSFRQLEP-----SEGHQVRNLSWSPT 207 (616)
Q Consensus 150 ~~V~~v~~sp~g~-~lasgs~Dg~i~iwd~~~~~~--~~~~~~~~~~-----~~~~~v~~l~~sp~ 207 (616)
..-..|+|.|+|. +|+.+...|.|++++..+... .+..+..... ........|+|+|+
T Consensus 14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~ 79 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPN 79 (463)
T ss_dssp SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTT
T ss_pred CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCC
Confidence 3457899999996 566678899999997543211 1111111111 11345889999996
No 353
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=91.77 E-value=9.7 Score=36.70 Aligned_cols=213 Identities=15% Similarity=0.110 Sum_probs=112.6
Q ss_pred CCCCEEEEEEcCCcEEEEeCCCCcccc---ccceecCCCCCCceEEEEecCCCCeEEEEeCCCeEEEEECCCCeeee-Ee
Q 048012 159 HSGSRVLSGSYDYTVRMYDFQGMNSRL---QSFRQLEPSEGHQVRNLSWSPTSDRFLCVTGSAQAKIYDRDGLTLGE-FV 234 (616)
Q Consensus 159 p~g~~lasgs~Dg~i~iwd~~~~~~~~---~~~~~~~~~~~~~v~~l~~sp~g~~l~~~s~d~~v~vwd~~~~~~~~-~~ 234 (616)
++..++++.+.+|.|+--.+....... .....+....+..+..+......+.++..+..|.++-+......... ..
T Consensus 6 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~lke~D~l~~~~~~~~~~~ll~~T~~G~~~~~~~~~ip~~~r~~ 85 (312)
T 1suu_A 6 QKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLNDGDEIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSSRAS 85 (312)
T ss_dssp --CEEEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCCCTTCCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCC-----
T ss_pred CCCCEEEEEeCCCEEEEeEHHHhhccccCCCCceecccCCCCEEEEEEEECCCCEEEEEECCCeEEEEEHHHCCCCCccC
Confidence 456678889999999988764322110 01112222234456666666666788888888887776654211110 01
Q ss_pred eCceeEeecccCCCcccceEEEEEcCC--CCCEEEEEeCCCCEEEEECCCccccc--eEEeeeccCCCCccEEEEEECCC
Q 048012 235 KGDMYIRDLKNTKGHICGLTCGEWHPK--TKETILTSSEDGSLRIWDVNEFKSQK--QVIKPKLARPGRVAVTTCAWDCD 310 (616)
Q Consensus 235 ~~~~~~~~~~~~~~h~~~v~~~~~~p~--~~~~l~s~s~Dg~v~iwd~~~~~~~~--~~~~~~~~~~~~~~v~~~~~sp~ 310 (616)
.|.. +.....+.. ...|..+...++ ....|+..+..|.++...+....... -+..... .. ...+..+.....
T Consensus 86 ~G~~-i~~~l~l~~-~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i~L-~~-~d~lv~~~~~~~ 161 (312)
T 1suu_A 86 KGQN-ISELINLGD-QEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKL-ND-KDFVTSAEIVFK 161 (312)
T ss_dssp --CB-GGGTSCCCT-TCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----CEECBCC-CT-TCCEEEEEEECT
T ss_pred CCcC-hhhccCCCC-CCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccCCCcEEEEec-CC-CCEEEEEEEeCC
Confidence 1110 011111222 223444433221 23578888999999998876543221 1111111 11 224444444444
Q ss_pred CCeEEEEeCCCcEEEEeCCCC----CC-CCCceeeecCCCCCeEEEEEcCCCCeEEEEecCCcEEEEeCCC
Q 048012 311 GKCIAGGIGDGSIQVWNLKPG----WG-SRPDIHVEKGHSDDITALKFSSDGRILLSRSFDGSLKVWDLRK 376 (616)
Q Consensus 311 g~~l~~g~~dg~I~iwd~~~~----~~-~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~v~lwd~~~ 376 (616)
...|+..+.+|.+..+....- .. .......+. ....|.++..-.++..|++.+..|.++...+..
T Consensus 162 ~~~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~-~~d~vv~~~~v~~~~~l~~vt~~G~~kr~~~~e 231 (312)
T 1suu_A 162 DEKVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLK-EGDLFVKVLSVKENPYLLIVSENGYGKRLNMSK 231 (312)
T ss_dssp TCEEEEEETTSEEEEEEGGGSCBCCTTBCCEECCCCC-TTCCEEEEEECTTCSEEEEEETTSEEEEEEGGG
T ss_pred CCEEEEEeCCCcEEEEEHHHccccCCCCCCeEeEEeC-CCCEEEEEEEECCCCeEEEEECCCceEEEEHHH
Confidence 567888889999998876531 00 001111122 234566666655667788889999999998864
No 354
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=91.24 E-value=10 Score=44.33 Aligned_cols=149 Identities=13% Similarity=0.132 Sum_probs=89.6
Q ss_pred CCcEEEEeCCCCccccccceecCCCCCCceEEEEecCCCCeEEEEeC-------CCeEEEEECCCCeeeeEeeCceeEee
Q 048012 170 DYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSDRFLCVTG-------SAQAKIYDRDGLTLGEFVKGDMYIRD 242 (616)
Q Consensus 170 Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~s~-------d~~v~vwd~~~~~~~~~~~~~~~~~~ 242 (616)
+..|.-|++.+.....+.+.......+..|....-+++.++++..+- .|.+.+|.++...
T Consensus 124 ~~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~------------- 190 (1630)
T 1xi4_A 124 DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV------------- 190 (1630)
T ss_pred CCeEEEeccCCCCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeeccccc-------------
Confidence 56799999976444444454444445678999999999998776542 3677888776443
Q ss_pred cccCCCcccceEEEEEc--CCCCCEEEEEeC---CCCEEEEECCCc-cccceEE-----eeeccCCCCccEEEEEECCCC
Q 048012 243 LKNTKGHICGLTCGEWH--PKTKETILTSSE---DGSLRIWDVNEF-KSQKQVI-----KPKLARPGRVAVTTCAWDCDG 311 (616)
Q Consensus 243 ~~~~~~h~~~v~~~~~~--p~~~~~l~s~s~---Dg~v~iwd~~~~-~~~~~~~-----~~~~~~~~~~~v~~~~~sp~g 311 (616)
.+.+.||.+....+... +....+++.+.. .+.+.|-++... .....+. ..........-..++..++.-
T Consensus 191 sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~ 270 (1630)
T 1xi4_A 191 SQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKH 270 (1630)
T ss_pred chhhhHhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEecccc
Confidence 23356676655444432 111223333322 267888888543 1101110 011111111234567777777
Q ss_pred CeEEEEeCCCcEEEEeCCCC
Q 048012 312 KCIAGGIGDGSIQVWNLKPG 331 (616)
Q Consensus 312 ~~l~~g~~dg~I~iwd~~~~ 331 (616)
..+..-+.-|.|++||+.++
T Consensus 271 g~iy~itk~G~~~~~d~~t~ 290 (1630)
T 1xi4_A 271 DVVFLITKYGYIHLYDLETG 290 (1630)
T ss_pred CEEEEEecCceEEEEecccc
Confidence 78888899999999999987
No 355
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=91.20 E-value=13 Score=37.02 Aligned_cols=282 Identities=11% Similarity=0.008 Sum_probs=124.0
Q ss_pred cccEEEEEECC--CCCEEEEEEcCCc--EEEEeCCCCccccccceec---CCC-------CCCceEEEEecCC--CCeEE
Q 048012 149 TKIVSALAVDH--SGSRVLSGSYDYT--VRMYDFQGMNSRLQSFRQL---EPS-------EGHQVRNLSWSPT--SDRFL 212 (616)
Q Consensus 149 ~~~V~~v~~sp--~g~~lasgs~Dg~--i~iwd~~~~~~~~~~~~~~---~~~-------~~~~v~~l~~sp~--g~~l~ 212 (616)
...|.+|+++| .+.++| +...|. ..||-..........+... ... ....|.+|++.|. ...|.
T Consensus 54 ~~~v~~i~~dp~~~~~l~~-g~~~g~~g~gl~~s~D~G~tW~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~ 132 (394)
T 3b7f_A 54 GHTIHHIVQDPREPERMLM-AARTGHLGPTVFRSDDGGGNWTEATRPPAFNKAPEGETGRVVDHVFWLTPGHASEPGTWY 132 (394)
T ss_dssp TSEEEEEEECSSSTTCEEE-EEEC--CCEEEEEESSTTSCCEECSBCCCCCCCC----CCCCCEEEEEEECCTTSTTCEE
T ss_pred CCceEEEEECCCCCCeEEE-EecCCCCCccEEEeCCCCCCceECCccccCCCcccccccccccceeEEEeCCCCCCCEEE
Confidence 35699999998 444444 444440 1233332222222222110 000 1125888999873 45666
Q ss_pred EEeCCCeEEEEECCCCeeeeEeeCceeEeeccc---C-------CCcccceEEEEEcCCCCCEEEEEeCCCCEEEEECCC
Q 048012 213 CVTGSAQAKIYDRDGLTLGEFVKGDMYIRDLKN---T-------KGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNE 282 (616)
Q Consensus 213 ~~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~---~-------~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~ 282 (616)
+++..+.|...+-.+...... ... ..... . ......|.+|.++|.....|+.+..++.|...+ .
T Consensus 133 ~g~~~ggl~~S~DgG~tW~~~-~~~---~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~vg~~~ggl~~s~--D 206 (394)
T 3b7f_A 133 AGTSPQGLFRSTDHGASWEPV-AGF---NDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLYIGMSSGGVFEST--D 206 (394)
T ss_dssp EEEETTEEEEESSTTSBCEEC-HHH---HTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEEEEEETBEEEEES--S
T ss_pred EEecCCcEEEEcCCCCCeEEC-cCc---cCCccccccccccccCCCCCCceeEEEECCCCCCEEEEEECCCCEEEEC--C
Confidence 666666665554333332211 000 00000 0 012245788999885434444454444343332 2
Q ss_pred ccccceEEeeeccC---C-----CCccEEEEEECCC-CCeEEEEeCCCcEEEEeCCCCCCCCCceee-ecC-CCCCeEEE
Q 048012 283 FKSQKQVIKPKLAR---P-----GRVAVTTCAWDCD-GKCIAGGIGDGSIQVWNLKPGWGSRPDIHV-EKG-HSDDITAL 351 (616)
Q Consensus 283 ~~~~~~~~~~~~~~---~-----~~~~v~~~~~sp~-g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~-~~~-h~~~V~~l 351 (616)
.............. . ....+.++++++. ...|+++...| |...+-... ....+.. +.. -...+.+|
T Consensus 207 gG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~g-l~~s~D~G~--tW~~~~~~l~~~~~~~~~~i 283 (394)
T 3b7f_A 207 AGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCG-IYRMDRREG--VWKRIGDAMPREVGDIGFPI 283 (394)
T ss_dssp TTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTE-EEEEETTTT--EEECGGGGSCTTTCSCEEEE
T ss_pred CCCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCe-EEEeCCCCC--cceECCCCCCCCCccceEEE
Confidence 21111111100000 0 0124889999985 46677776555 544432211 1111111 111 00235788
Q ss_pred EEcC-CCCeEEEEec-----------CCcEEEEeCCCCCCcceEec-CCCCCC-----cceeEEECCC-CCEEEEeeccc
Q 048012 352 KFSS-DGRILLSRSF-----------DGSLKVWDLRKMKEPLKVFE-DLPNNY-----AQTNVAFSPD-EQLFLTGTSVE 412 (616)
Q Consensus 352 ~~sp-dg~~l~s~s~-----------Dg~v~lwd~~~~~~~~~~~~-~~~~~~-----~v~~v~fspd-g~~l~~gs~~~ 412 (616)
+++| +...|+.+.. ++...||...........+. .++... ....++++|. ...|++++
T Consensus 284 ~~~p~~~~~l~~~t~~~~~~w~~~~~~~~~~~~~S~DgG~tW~~~~~glp~~~~~~~~~~~~~~~~p~~~~~l~~g~--- 360 (394)
T 3b7f_A 284 VVHQRDPRTVWVFPMDGSDVWPRVSPGGKPAVYVTRDAGESWQRQDRGLPTDQAWLTVKRQAMTADAHAPVGVYFGT--- 360 (394)
T ss_dssp EECSSCTTCEEEEECBCCSSTTCCBCCSSCCEEEESSTTSCCEEECBTSCCSSCCCCCCTBSEEECCSSSCCEEEEC---
T ss_pred EECCCCCCEEEEEeccCCccceeecCCCceeEEEECCCCCCceECCCCCCCccccceEEEEEEEECCCCCCEEEEEe---
Confidence 8886 3344444432 33455666555444333332 222211 1246888875 34566665
Q ss_pred cccCCCceEEEEeCCCCceEEEEecCCCCCeEEEEEc
Q 048012 413 RESTTGGLLCFYDREKLELVSRVGISPACSVVQCAWH 449 (616)
Q Consensus 413 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~ 449 (616)
..+.|..- ...++.-..+.. .-..+.+++|.
T Consensus 361 ----~~g~l~~S-~D~G~tW~~~~~-~lp~~~~v~~~ 391 (394)
T 3b7f_A 361 ----TGGEIWAS-ADEGEHWQCIAS-HLPHIYAVQSA 391 (394)
T ss_dssp ----TTSCEEEE-SSTTSBCEEEEC-SCSCEEEEEEE
T ss_pred ----CCCeEEEE-CCCCCCceEccc-CCCCeeEEEEe
Confidence 44544332 233333333322 22346666654
No 356
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=90.86 E-value=12 Score=36.18 Aligned_cols=212 Identities=10% Similarity=0.025 Sum_probs=111.1
Q ss_pred CCCCEEEEEEcCCcEEEEeCCCCccccccceecCCCCCCceEEEEecCCCCeEEEEeCCCeEEEEECCCCeeeeE-eeCc
Q 048012 159 HSGSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSDRFLCVTGSAQAKIYDRDGLTLGEF-VKGD 237 (616)
Q Consensus 159 p~g~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~s~d~~v~vwd~~~~~~~~~-~~~~ 237 (616)
|+..++++.+.+|.|+--.+...... ....+....+..+..+......+.|+..+..|.+.-+.......... ..|.
T Consensus 3 ~~e~~~v~lT~~G~IKr~~~~~~~~~--~~~~~~lke~D~l~~~~~~~t~d~ll~fT~~Gr~~~~~~~elp~~~r~a~G~ 80 (323)
T 1wp5_A 3 ASEDVIVTVTKDGYVKRTSLRSYAAS--NGQDFAMKDTDRLLAMLEMNTKDVLLLFTNKGNYLYCPVHELPDIRWKDLGQ 80 (323)
T ss_dssp SCCEEEEEEETTCEEEEEEHHHHHHT--TTCCCCCCTTCCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCTTSCCE
T ss_pred cCCcEEEEEeCCCEEEEeEHHHhhhc--CccccccCCCCEEEEEEEECCCCEEEEEECCCEEEEEEHHHCcCCCCCCCCc
Confidence 45667888999999987764321100 00111122344566666666677888888888876665432111000 0111
Q ss_pred eeEeecccCCCcccceEEEEEcCC--CCCEEEEEeCCCCEEEEECCCccccc---eEEeeeccCCCCccEEEEEECCCCC
Q 048012 238 MYIRDLKNTKGHICGLTCGEWHPK--TKETILTSSEDGSLRIWDVNEFKSQK---QVIKPKLARPGRVAVTTCAWDCDGK 312 (616)
Q Consensus 238 ~~~~~~~~~~~h~~~v~~~~~~p~--~~~~l~s~s~Dg~v~iwd~~~~~~~~---~~~~~~~~~~~~~~v~~~~~sp~g~ 312 (616)
.+..+..+.. ...|..+....+ ...+|+.++..|.++-..+....... -+...... .. ..+..+.......
T Consensus 81 -~i~~~i~L~~-~e~Iv~~~~~~~~~~~~~ll~~T~~G~iKrt~l~e~~~~~r~~G~~ai~l~-e~-d~lv~~~~~~~~~ 156 (323)
T 1wp5_A 81 -HIANIIPIDR-DEEIIKAIPINDFELNGYFLFVTRNGMVKKTELKHYKAQRYSKPLTGINLK-ND-DQVVDVHLTDGMN 156 (323)
T ss_dssp -EGGGTSCCCT-TCCEEEEEEESCTTSSCEEEEEETTSEEEEEEGGGGCCSCCSSCEECSCCC-TT-CCEEEEEEECSCS
T ss_pred -ChhhccCCCC-CCEEEEEEEecccCCCceEEEEeCCCeEEEeEHHHhhhccccCceEEEEeC-CC-CEEEEEEEeCCCC
Confidence 1111112222 223444332222 13578889999999999886543322 11111111 11 2444444444556
Q ss_pred eEEEEeCCCcEEEEeCCCCCCC---CCceeeec-CCCCCeEEEEEcCCCC-eEEEEecCCcEEEEeCCC
Q 048012 313 CIAGGIGDGSIQVWNLKPGWGS---RPDIHVEK-GHSDDITALKFSSDGR-ILLSRSFDGSLKVWDLRK 376 (616)
Q Consensus 313 ~l~~g~~dg~I~iwd~~~~~~~---~~~~~~~~-~h~~~V~~l~~spdg~-~l~s~s~Dg~v~lwd~~~ 376 (616)
.|+..+.+|.+..+....-... ..-+..+. .-...|.++..-.++. .|++.+..|..+..++..
T Consensus 157 ~i~l~T~~G~~irf~~~ev~~~gR~a~GV~~i~L~~~d~Vv~~~~~~~~~~~ll~vt~~G~gKr~~~~e 225 (323)
T 1wp5_A 157 ELFLVTHNGYALWFDESEVSIVGVRAAGVKGMNLKEGDYIVSGQLITSKDESIVVATQRGAVKKMKLTE 225 (323)
T ss_dssp EEEEEETTSEEEEEEGGGSCBCCSSCCCEECCCCCTTCCEEEEEEECCTTCEEEEEETTSEEEEEEGGG
T ss_pred EEEEEeCCCcEEEEEHHHCcccCCCCcCEEEEEeCCCCEEEEEEEEcCCCcEEEEEECCCceEEEEHHH
Confidence 7888888999888876431000 01111111 1234466665444445 788888899888887754
No 357
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=89.03 E-value=1.9 Score=42.22 Aligned_cols=114 Identities=11% Similarity=0.139 Sum_probs=64.0
Q ss_pred CeEEEEeCCCcEEEEeCCCCCCCCCceeeecCC-CCCeEEEEE---cCCCCeEEEE-ecCCcEEEEeCCCCCCcceEecC
Q 048012 312 KCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGH-SDDITALKF---SSDGRILLSR-SFDGSLKVWDLRKMKEPLKVFED 386 (616)
Q Consensus 312 ~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~h-~~~V~~l~~---spdg~~l~s~-s~Dg~v~lwd~~~~~~~~~~~~~ 386 (616)
.++++++.||.|+-+|..+| ...-.+... ..++....- ..++..++.. +.||.|..++..++..... +.
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG----~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~-~~- 84 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNG----HIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLP-LS- 84 (339)
T ss_dssp EEEEEEETTSCEEEEETTTT----EEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEE-EE-
T ss_pred CEEEEEeCCCeEEEEECCCC----cEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEee-ec-
Confidence 46788889999999998877 233222221 112221110 0123334343 5789998888776422111 10
Q ss_pred CCCCCcceeEEEC-----------CCCCEEEEeeccccccCCCceEEEEeCCCCceEEEEecC
Q 048012 387 LPNNYAQTNVAFS-----------PDEQLFLTGTSVERESTTGGLLCFYDREKLELVSRVGIS 438 (616)
Q Consensus 387 ~~~~~~v~~v~fs-----------pdg~~l~~gs~~~~~~~~dg~i~iwd~~~~~~~~~~~~~ 438 (616)
.+......-+.+. ..+..+++|+ .+|.+...|+.+|+.+.++...
T Consensus 85 ~~~lv~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs-------~~g~l~ald~~tG~~~W~~~~~ 140 (339)
T 2be1_A 85 IRQLVSTSPLHLKTNIVVNDSGKIVEDEKVYTGS-------MRTIMYTINMLNGEIISAFGPG 140 (339)
T ss_dssp HHHHHTTCSEEEECC----------CCEEEEECE-------EEEEEEEEETTTCCEEEEESTT
T ss_pred cccceeccccccCCCceeecccccccCCEEEEEe-------cCCEEEEEECCCCcEEEEEecC
Confidence 0000001112211 1456778888 8999999999999999998653
No 358
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=88.93 E-value=19 Score=35.61 Aligned_cols=146 Identities=11% Similarity=0.090 Sum_probs=80.0
Q ss_pred CEEEEECCCc--cccceEEeeeccCCCCccEEEEEEC---CC----CCeEEEEe-CCCcEEEEeCCCCCCCCCcee----
Q 048012 274 SLRIWDVNEF--KSQKQVIKPKLARPGRVAVTTCAWD---CD----GKCIAGGI-GDGSIQVWNLKPGWGSRPDIH---- 339 (616)
Q Consensus 274 ~v~iwd~~~~--~~~~~~~~~~~~~~~~~~v~~~~~s---p~----g~~l~~g~-~dg~I~iwd~~~~~~~~~~~~---- 339 (616)
.|.+||+.+. +.++.+..+.........+..+++. +. +.+++... ..+.|.+||+.++.. .....
T Consensus 124 kLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~s-wRv~~~~~~ 202 (381)
T 3q6k_A 124 AIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDS-WNVTHPTFK 202 (381)
T ss_dssp EEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEE-EEEECGGGS
T ss_pred eEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcE-EEEccCCCc
Confidence 4667888776 6665555443322233467888777 22 33444443 467899999988631 11110
Q ss_pred -------eecCC----CCCeEEEEEcCC----CCeEEEEecCCcEEEEeCC-----CC--CCcceEecCCCCCCcceeEE
Q 048012 340 -------VEKGH----SDDITALKFSSD----GRILLSRSFDGSLKVWDLR-----KM--KEPLKVFEDLPNNYAQTNVA 397 (616)
Q Consensus 340 -------~~~~h----~~~V~~l~~spd----g~~l~s~s~Dg~v~lwd~~-----~~--~~~~~~~~~~~~~~~v~~v~ 397 (616)
...+. ...|..|+++|+ ++.|+-....+. ++|.+. +. ...++.+........-..++
T Consensus 203 pd~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss~-~ly~V~T~~L~~~~~~~~v~~~G~kg~~s~~~~~~ 281 (381)
T 3q6k_A 203 AERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSAI-KVYSVNTKELKQKGGKLNPELLGNRGKYNDAIALA 281 (381)
T ss_dssp CCSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSCS-EEEEEEHHHHSSTTCCCCCEEEEECCTTCCEEEEE
T ss_pred cccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCCC-cEEEEEHHHhhCcchhhceEEeeecCCCCCcceEE
Confidence 00111 146889999998 778877766552 344332 21 12233332221112233456
Q ss_pred EC-CCCCEEEEeeccccccCCCceEEEEeCCC
Q 048012 398 FS-PDEQLFLTGTSVERESTTGGLLCFYDREK 428 (616)
Q Consensus 398 fs-pdg~~l~~gs~~~~~~~~dg~i~iwd~~~ 428 (616)
+. .+|.++++-- ..+.|..|+..+
T Consensus 282 ~D~~~G~ly~~~~-------~~~aI~~w~~~~ 306 (381)
T 3q6k_A 282 YDPKTKVIFFAEA-------NTKQVSCWNTQK 306 (381)
T ss_dssp ECTTTCEEEEEES-------SSSEEEEEETTS
T ss_pred EeCCCCeEEEEec-------cCCeEEEEeCCC
Confidence 75 5565555555 678899999765
No 359
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=86.67 E-value=6.6 Score=40.86 Aligned_cols=109 Identities=13% Similarity=0.129 Sum_probs=67.0
Q ss_pred EEEEEECCCCCeEEEEe-CCCcEEEEeCCCCC--------CCCCceeeecCCCCCeEEEEEcCCCCeEEEEecCCcEEEE
Q 048012 302 VTTCAWDCDGKCIAGGI-GDGSIQVWNLKPGW--------GSRPDIHVEKGHSDDITALKFSSDGRILLSRSFDGSLKVW 372 (616)
Q Consensus 302 v~~~~~sp~g~~l~~g~-~dg~I~iwd~~~~~--------~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~v~lw 372 (616)
...|.++|+|+++++++ .+.+|.++|++... ..+..+.....-.-.....+|.++|+...|.-.|..|.-|
T Consensus 325 PHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~GlGPlHt~Fd~~G~aYTtlfidSqvvkW 404 (638)
T 3sbq_A 325 PHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGLGPLHTTFDGRGNAYTTLFIDSQVVKW 404 (638)
T ss_dssp CCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCSCEEEEEECSSSEEEEEETTTTEEEEE
T ss_pred CcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCCcccEEEECCCCceEeeeeecceEEEE
Confidence 34577899999988766 47889999987410 0111111111123346788999999666666689999999
Q ss_pred eCCCC------CCcceEecCCCCCCcceeEEE------CCCCCEEEEeec
Q 048012 373 DLRKM------KEPLKVFEDLPNNYAQTNVAF------SPDEQLFLTGTS 410 (616)
Q Consensus 373 d~~~~------~~~~~~~~~~~~~~~v~~v~f------spdg~~l~~gs~ 410 (616)
++... ...-.++....-.+.+-.+.- .+||++|++...
T Consensus 405 ni~~a~~~~~g~~~~~v~~k~dv~YqpGH~~~~~get~~~dGk~lv~lnK 454 (638)
T 3sbq_A 405 NMEEAVRAYKGEKVNYIKQKLDVHYQPGHLHASLCETNEADGKWLVALSK 454 (638)
T ss_dssp EHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCSCEEEEEES
T ss_pred eccHHHHHhcCccCCeeeeccccccCCcccccCCCccCCCCccEEEEecc
Confidence 98642 111122222222233444443 579999999873
No 360
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=85.62 E-value=44 Score=36.26 Aligned_cols=104 Identities=13% Similarity=0.132 Sum_probs=56.5
Q ss_pred CCCcEEEEeCCCCCCC---CCceee-e-cCCCCCeEEEEEcCCCCeEEEEecCCc--EEEEeCCCCCCcceEecCCCCCC
Q 048012 319 GDGSIQVWNLKPGWGS---RPDIHV-E-KGHSDDITALKFSSDGRILLSRSFDGS--LKVWDLRKMKEPLKVFEDLPNNY 391 (616)
Q Consensus 319 ~dg~I~iwd~~~~~~~---~~~~~~-~-~~h~~~V~~l~~spdg~~l~s~s~Dg~--v~lwd~~~~~~~~~~~~~~~~~~ 391 (616)
..+.|.+.|+..+... ...... + ......+..+.|..+ .++++...++. |.++|+.++......+-.++...
T Consensus 318 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~l~~~~~~~~~~~l~~~~~~~g~~~~~~~i~lp~~~ 396 (711)
T 4hvt_A 318 KAGSLVALHFTDLLKTESDKTSLKILFTPTANEVFNFISTTKD-RVFLATYDNVVAKVVTFTLENEQWTKPVVLKLPYQN 396 (711)
T ss_dssp CTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTEEEEEEEECSS-CEEEEEEETTEEEEEEECEETTEECCCEEECCCSTT
T ss_pred CCCeEEEEECCcccccccccccceEEECCCCCCeEEEEEEECC-EEEEEEEECCEEEEEEEECCCCceEEEeccCCCCCe
Confidence 4678999998753100 112222 2 222345778898866 56777777764 66777654321122211222223
Q ss_pred cceeEEECCCCCEE-EEeeccccccCCCceEEEEeCC
Q 048012 392 AQTNVAFSPDEQLF-LTGTSVERESTTGGLLCFYDRE 427 (616)
Q Consensus 392 ~v~~v~fspdg~~l-~~gs~~~~~~~~dg~i~iwd~~ 427 (616)
.+..+.+++++..+ ++.++ ...-+.+..+|+.
T Consensus 397 ~~~~~~~~~~~~~~~~~~ss----~~~P~~~~~~d~~ 429 (711)
T 4hvt_A 397 AIFGMSSYEEEEEALITIEN----SIVPPTIYLWVKT 429 (711)
T ss_dssp CEEEEECCTTCSCEEEEEEC----SSSCCEEEEECTT
T ss_pred EEEEEeecCcCCEEEEEEec----CCCCCEEEEEeCC
Confidence 46666677776544 44442 1145788888887
No 361
>2cn3_A Xyloglucanase, beta-1,4-xyloglucan hydrolase; glycosylhydrolase, family GH74; HET: GLC BGC GAL; 1.95A {Clostridium thermocellum} PDB: 2cn2_A*
Probab=84.41 E-value=51 Score=35.95 Aligned_cols=200 Identities=12% Similarity=0.078 Sum_probs=97.9
Q ss_pred ceEEEEecCCC-CeEEEEeCCCeEEEEECCCCeeeeEeeCceeEeecccCCC----cccceEEEEEcCCCCCEEEEEeCC
Q 048012 198 QVRNLSWSPTS-DRFLCVTGSAQAKIYDRDGLTLGEFVKGDMYIRDLKNTKG----HICGLTCGEWHPKTKETILTSSED 272 (616)
Q Consensus 198 ~v~~l~~sp~g-~~l~~~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~----h~~~v~~~~~~p~~~~~l~s~s~D 272 (616)
.|..|+++|.. ..+++++..+.|...+-.+..... +....+ ....|.+++++|...+.++.+...
T Consensus 24 ~i~~i~~~p~~~~~~~~~~~~ggv~rS~D~G~tW~~----------i~~~~~~~~~~~~~i~~i~~dp~~~~~v~v~~~~ 93 (737)
T 2cn3_A 24 FMPGIVFNETEKDLIYARAAIGGAYRWDPSTETWIP----------LLDHFQMDEYSYYGVESIATDPVDPNRVYIVAGM 93 (737)
T ss_dssp CCCEEEECSSSTTCEEEECSSSCEEEEETTTTEEEE----------CCTTCCGGGGGGGCEEEEEECSSSTTCEEEEECS
T ss_pred eeeEEEECCCCCCEEEEEecCCcEEEeCCCCCCEEE----------CcCccCcccccCCCcceEEeCCCCCCEEEEEecc
Confidence 79999999974 456666666666666544444322 111111 134689999998654455544421
Q ss_pred -------CCEEEEECCCccccceEEe-eecc---CCCCccEEEEEECCC-CCeEEEEeCCCcEEEEeCCCCCCCCCceee
Q 048012 273 -------GSLRIWDVNEFKSQKQVIK-PKLA---RPGRVAVTTCAWDCD-GKCIAGGIGDGSIQVWNLKPGWGSRPDIHV 340 (616)
Q Consensus 273 -------g~v~iwd~~~~~~~~~~~~-~~~~---~~~~~~v~~~~~sp~-g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~ 340 (616)
+...||--.++........ .... ......+..++++|. .+.|+++...|. -||--..+-.....+..
T Consensus 94 ~~~~~~~~~~~l~~S~DgG~TW~~~~~~~~~~~~~~g~~~~~~l~~~p~~~~~v~~g~~~g~-gl~~S~DgG~tW~~~~~ 172 (737)
T 2cn3_A 94 YTNDWLPNMGAILRSTDRGETWEKTILPFKMGGNMPGRSMGERLAIDPNDNRILYLGTRCGN-GLWRSTDYGVTWSKVES 172 (737)
T ss_dssp CSSSSSCCCCEEEEESSSSSSCEEEECSSCCCTTSTTTTSCCCEEECSSCTTCEEEECSTTC-CEEEESSTTSSCEECTT
T ss_pred cccccccCCccEEEeCCCCCCcccCCCCcccCCCcCcccccceEEECCCCCCEEEEeeccCC-cEEEeCCCCcceecccC
Confidence 1245555444333222222 1110 011112467888884 466777764321 23322221101111111
Q ss_pred ec--------------CCCCCeEEEEEcCCC-------CeEEEEecCCcEEEEeCCCCCCcceEecCCCCCCcceeEEEC
Q 048012 341 EK--------------GHSDDITALKFSSDG-------RILLSRSFDGSLKVWDLRKMKEPLKVFEDLPNNYAQTNVAFS 399 (616)
Q Consensus 341 ~~--------------~h~~~V~~l~~spdg-------~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~v~~v~fs 399 (616)
+. .....+..+.++|.. ..|+.+..++...||--.........+...+.......+.++
T Consensus 173 ~~~~~~~~~~p~~~~~~~~~g~~~v~~dp~~~~~~~~~~~v~~~~~~~~~~v~~S~DgG~tW~~~~~~p~~~~~~~~~~~ 252 (737)
T 2cn3_A 173 FPNPGTYIYDPNFDYTKDIIGVVWVVFDKSSSTPGNPTKTIYVGVADKNESIYRSTDGGVTWKAVPGQPKGLLPHHGVLA 252 (737)
T ss_dssp CCCCCCCBSCTTSTTTCSBCCEEEEEECGGGSCTTSCCSCEEEEESCSSCCEEEESSTTSCCEECTTCCCSSEEEEEEEC
T ss_pred CCCCcccccCcccccccCCCCEEEEEcCCCCcccCCCCCEEEEEecCCCccEEEEcCCCCceEECCCCCCcccceEEEEC
Confidence 11 112347788888743 255555555433355444444444444433333223456788
Q ss_pred CCCCEEEEe
Q 048012 400 PDEQLFLTG 408 (616)
Q Consensus 400 pdg~~l~~g 408 (616)
|++.++++.
T Consensus 253 ~~~~l~~~~ 261 (737)
T 2cn3_A 253 SNGMLYITY 261 (737)
T ss_dssp TTSEEEEEE
T ss_pred CCCeEEEEe
Confidence 877666654
No 362
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=79.30 E-value=52 Score=32.55 Aligned_cols=207 Identities=9% Similarity=0.073 Sum_probs=102.9
Q ss_pred CEEEEEEcCCcEEEEeCCCCcc-------ccccceecCCCCCCceEEEEecCCCCeEEEEeCCCeEEEEECCCC-eeeeE
Q 048012 162 SRVLSGSYDYTVRMYDFQGMNS-------RLQSFRQLEPSEGHQVRNLSWSPTSDRFLCVTGSAQAKIYDRDGL-TLGEF 233 (616)
Q Consensus 162 ~~lasgs~Dg~i~iwd~~~~~~-------~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~s~d~~v~vwd~~~~-~~~~~ 233 (616)
...+.-..||.|..|-.....+ .......+.......+..++.+.-..+.++.+.++.|+.|-.... ++..-
T Consensus 63 ~~~~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~~~~v~i~~G~~h~~al~~~G~v~~wG~n~~GqLG~g 142 (389)
T 3kci_A 63 QTLFAVTADGKLYATGYGAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLGHG 142 (389)
T ss_dssp TEEEEEETTSCEEEEECCGGGTTSSSSSCCEEEEEECGGGTTSCEEEEEECTTCSEEEEEETTSCEEEEECCGGGTTCSS
T ss_pred CeEEEEcCCCcEEEEECCCCCCCCCCCcCCccCCEEcccccCCceeEEEECcCCCeEEEEcCCCCEEEEeCCCCCcCCCC
Confidence 3445556778888886442111 111112222223344666777777788888899999999965421 11000
Q ss_pred eeCc-eeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEEEECCCcccc-----ceEEeee-ccCCCCccEEEEE
Q 048012 234 VKGD-MYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQ-----KQVIKPK-LARPGRVAVTTCA 306 (616)
Q Consensus 234 ~~~~-~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~-----~~~~~~~-~~~~~~~~v~~~~ 306 (616)
.... .....+..+. ...|..++. +....+....+|.|+.|-.....++ .....+. ........|..++
T Consensus 143 ~~~~~~~p~~v~~l~--~~~i~~va~---G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~v~~ia 217 (389)
T 3kci_A 143 NRSPCDRPRVIESLR--GIEVVDVAA---GGAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQGHRVVDIA 217 (389)
T ss_dssp SCCCEEEEEECGGGT--TSCEEEEEE---CSSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEE
T ss_pred CCccCcCCeEecccC--CCeEEEEEe---CcCeEEEEeCCCeEEEeCCCCCCCcCCCCCcccccceEecccCCCeEEEEE
Confidence 0000 0011121111 124555554 3346666778999999976542211 0111111 1111122466666
Q ss_pred ECCCCCeEEEEeCCCcEEEEeCCCCCC----CC---CceeeecC-CCCCeEEEEEcCCCCeEEEEecCCcEEEEeCC
Q 048012 307 WDCDGKCIAGGIGDGSIQVWNLKPGWG----SR---PDIHVEKG-HSDDITALKFSSDGRILLSRSFDGSLKVWDLR 375 (616)
Q Consensus 307 ~sp~g~~l~~g~~dg~I~iwd~~~~~~----~~---~~~~~~~~-h~~~V~~l~~spdg~~l~s~s~Dg~v~lwd~~ 375 (616)
........++-..||.|+.|-...... .. ........ ....|..|+.. ....+.-..||.|+.|=..
T Consensus 218 ~G~g~~~t~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~v~~G--~~hs~alt~~G~v~~wG~n 292 (389)
T 3kci_A 218 CGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSLTGLGVVKVECG--SQFSVALTKSGAVYTWGKG 292 (389)
T ss_dssp ECCSSCEEEEEETTTEEEEEECCGGGTTSSSSCCCEEEEEECGGGTTSCEEEEEEE--TTEEEEEETTSCEEEEECC
T ss_pred EcCCCcEEEEEccCCEEEEEeCCCCCCCCCCCCCCccccEEecccCCCcEEEEeCC--CCEEEEEeCCCeEEEEeCC
Confidence 544335666677899999996432100 00 00011111 12246666654 3344555678999999654
No 363
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=73.05 E-value=51 Score=37.21 Aligned_cols=39 Identities=10% Similarity=0.068 Sum_probs=33.9
Q ss_pred cceeEEECCCCCEEEEeeccccccCCCceEEEEeCCCCceEEEEec
Q 048012 392 AQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREKLELVSRVGI 437 (616)
Q Consensus 392 ~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~~~~~~~~~~ 437 (616)
.+.+++..++..++++-+ .|++++||++.+++++.+...
T Consensus 237 ~~~~~~~~~~~~~lftl~-------~D~~LRiWsl~t~~~v~t~dL 275 (950)
T 4gq2_M 237 TIISMIFLSTYNVLVMLS-------LDYKLKVLDLSTNQCVETIEL 275 (950)
T ss_dssp CEEEEEEETTTTEEEEEE-------TTCEEEEEETTTTEEEEEEEC
T ss_pred eEEEEeecCCCcEEEEEE-------CCCEEEEEECCCCCeEeeecc
Confidence 366778888889999999 899999999999999988754
No 364
>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*
Probab=70.04 E-value=1.3e+02 Score=32.93 Aligned_cols=165 Identities=10% Similarity=0.083 Sum_probs=80.6
Q ss_pred cccEEEEEECCC-CCEEEEEEcCCcEEEEeCCCCccccccceecCCC------CCCceEEEEecCCC-CeEEEEeCCCe-
Q 048012 149 TKIVSALAVDHS-GSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPS------EGHQVRNLSWSPTS-DRFLCVTGSAQ- 219 (616)
Q Consensus 149 ~~~V~~v~~sp~-g~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~------~~~~v~~l~~sp~g-~~l~~~s~d~~- 219 (616)
...|.+|+++|. ...++.+...+.|...+=. ... +..+... ....|.+|+++|.. ..++++.....
T Consensus 14 ~g~i~~i~~~p~~~~~~~a~~~~ggv~rS~Dg--G~t---W~~~~~~~~~~~~~~~~i~~ia~dp~~~~~i~~~~g~~~~ 88 (789)
T 1sqj_A 14 GGYITGIVAHPKTKDLLYARTDIGGAYRWDAG--TSK---WIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQGRYVG 88 (789)
T ss_dssp CSCEEEEEECSSSTTCEEEEESSSCEEEEETT--TTE---EEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEECSCTT
T ss_pred CCcEEEEEECCCCCCEEEEEecCCCEEEecCC--CCC---eeECccCCCcccccCCceeEEEECCCCCCEEEEEeCccCC
Confidence 468999999986 3566667777766555422 222 2222221 13469999999853 44555554321
Q ss_pred ---EEEE-ECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEEEECCCccccceEEeeecc
Q 048012 220 ---AKIY-DRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLA 295 (616)
Q Consensus 220 ---v~vw-d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~ 295 (616)
..|| ..+++.-+........ ..........+..++++|.....++.+...+. ||-..++............
T Consensus 89 ~~~~~v~~S~DgG~TW~~~~~~~~---~~~~~~~~~~~~~iav~p~~~~~v~~g~~~~g--l~~S~DgG~TW~~~~~~~~ 163 (789)
T 1sqj_A 89 DEWAAFYVSEDRGQSFTIYESPFP---MGANDMGRNNGERLAVNPFNSNEVWMGTRTEG--IWKSSDRAKTWTNVTSIPD 163 (789)
T ss_dssp SSCCEEEEESSTTSEEEEEECSSC---CCTTSTTTTSCCCEEEETTEEEEEEEECSSSC--EEEESSTTSSCEEETTSCC
T ss_pred CcccEEEEECCCCCcceeccCCcc---cCccCCCccceeEEEEcCCCCCEEEEEeccCC--EEEECCCCcccCCCccCcc
Confidence 2333 3444444333211000 00000001135567888865556666664443 3333332222222111000
Q ss_pred -CCCCccEEEEEECCC-CCeEEEEeCC-CcE
Q 048012 296 -RPGRVAVTTCAWDCD-GKCIAGGIGD-GSI 323 (616)
Q Consensus 296 -~~~~~~v~~~~~sp~-g~~l~~g~~d-g~I 323 (616)
......+..+.++|. +..|+++..+ +.|
T Consensus 164 ~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~v 194 (789)
T 1sqj_A 164 AFTNGIGYTSVIFDPERNGTIYASATAPQGM 194 (789)
T ss_dssp CCSTTTCEEEEEECTTSTTCEEEEESSTTCE
T ss_pred ccCCCCCeEEEEECCCCCCEEEEEEcCCCeE
Confidence 011135788999884 4566666654 444
No 365
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=69.96 E-value=72 Score=29.82 Aligned_cols=171 Identities=11% Similarity=0.051 Sum_probs=93.5
Q ss_pred cccEEEEEECC-CCCEEEEEEcCCcEEEEeCCCCccccccceecCCCCCCceEEEEecCCCCeEEEEeCCCeEEEEECCC
Q 048012 149 TKIVSALAVDH-SGSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSDRFLCVTGSAQAKIYDRDG 227 (616)
Q Consensus 149 ~~~V~~v~~sp-~g~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~s~d~~v~vwd~~~ 227 (616)
...|.++.... +..+++..+.+|.|+...+............+....+..+..+......+.|+..+..|.+..+....
T Consensus 67 ~e~i~~v~~~~~~~~~~v~~T~~G~iKr~~l~~~~~~~~G~~~i~lkegD~l~~~~~~~~~~~ill~T~~G~~~r~~~~e 146 (276)
T 3no0_A 67 EEKIVGAFIREKFGNRLLLATKKGYVKKIPLAEFEYKAQGMPIIKLTEGDEVVSIASSVDETHILLFTKKGRVARFSVRE 146 (276)
T ss_dssp TCCEEEEEEGGGSCSEEEEEETTSEEEEEEGGGTTTCSTTEECSCCCTTCCEEEEEECCSSCEEEEEETTSEEEEEEGGG
T ss_pred CCEEEEEECCcCCCCEEEEEeCCCEEEEEEHHHhhhhcCCeEEEecCCCCEEEEEEEeCCCCEEEEEECCCEEEEEEhhh
Confidence 34444443321 46789999999999999876532111122222223445666666666677899999999988887653
Q ss_pred Ceeee-EeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEEEECCCccccce----EEeeeccCCCCccE
Q 048012 228 LTLGE-FVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQ----VIKPKLARPGRVAV 302 (616)
Q Consensus 228 ~~~~~-~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~~----~~~~~~~~~~~~~v 302 (616)
-.... ...|.. ...+... ..|..+....++ ..++..+..|.++...+........ +... ...+ .+
T Consensus 147 ip~~gR~a~Gv~----~i~L~~~-d~vv~~~~~~~~-~~ll~~T~~G~~kr~~~~e~~~~~R~gkGv~~i--~~~~--~l 216 (276)
T 3no0_A 147 VPPSTPGARGVQ----GIKLEKN-DETSGLRIWNGE-PYLLVITAKGRVKKISHEEIPKTNRGVKGTEVS--GTKD--TL 216 (276)
T ss_dssp SCBCCTTCCCEE----CCCCCTT-CCEEEEEEESSC-SEEEEEETTSCEEEEEGGGSCCCCTTCCCEECC--CSSS--CE
T ss_pred CCCcCCCCCCEE----EEccCCC-CEEEEEEEeCCC-CEEEEEeCCCcEEEeEHHHcccCCCCCcceEEE--cCCC--cE
Confidence 22110 001111 1122222 345554444433 4788889999999988754322211 1111 1111 23
Q ss_pred EEEEECCCCCeEEEEeCCCcEEE--EeCC
Q 048012 303 TTCAWDCDGKCIAGGIGDGSIQV--WNLK 329 (616)
Q Consensus 303 ~~~~~sp~g~~l~~g~~dg~I~i--wd~~ 329 (616)
..+........++..+.+|.+.. ++..
T Consensus 217 v~~~~~~~~~~i~~~t~~G~~ir~~~~~~ 245 (276)
T 3no0_A 217 VDLIPIKEEVELLITTKNGKAFYDKINQK 245 (276)
T ss_dssp EEEEEESSEEEEEEEETTSCEEEEEEEGG
T ss_pred EEEEEeCCCCEEEEEcCCCeEEEeeeCHH
Confidence 33322233446667777888877 7654
No 366
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=68.94 E-value=81 Score=35.59 Aligned_cols=34 Identities=9% Similarity=0.062 Sum_probs=29.8
Q ss_pred ceEEEEecCCCCeEEEEeCCCeEEEEECCCCeee
Q 048012 198 QVRNLSWSPTSDRFLCVTGSAQAKIYDRDGLTLG 231 (616)
Q Consensus 198 ~v~~l~~sp~g~~l~~~s~d~~v~vwd~~~~~~~ 231 (616)
.+.++...++..++++.+.|+++|||++.++.+.
T Consensus 237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v 270 (950)
T 4gq2_M 237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCV 270 (950)
T ss_dssp CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEE
T ss_pred eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeE
Confidence 4788888888899999999999999999987654
No 367
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=67.26 E-value=82 Score=29.43 Aligned_cols=168 Identities=14% Similarity=0.082 Sum_probs=94.0
Q ss_pred CCCceEEEEecCCCCeEEEEeCCCeEEEEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCC-CCCEEEEEeCCC
Q 048012 195 EGHQVRNLSWSPTSDRFLCVTGSAQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPK-TKETILTSSEDG 273 (616)
Q Consensus 195 ~~~~v~~l~~sp~g~~l~~~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~-~~~~l~s~s~Dg 273 (616)
.+..+..+.-....++|+..+..|.++-..+.. +...... .+ +. ....|..+.. .+ ....++..+.+|
T Consensus 22 ~gD~~~~~~~~~t~~~ll~fT~~G~v~~~~~~~--lp~~~~~-----~l--l~-~~e~i~~v~~-~~~~~~~~v~~T~~G 90 (276)
T 3no0_A 22 EKAPVVNILRVPFTEGLFLVSNRGRVYWIAGSQ--ALQGSKV-----SL--KS-REEKIVGAFI-REKFGNRLLLATKKG 90 (276)
T ss_dssp SCCCEEEEEEEETTSCEEEEETTSEEEEECSHH--HHTSEEC-----CC--SS-TTCCEEEEEE-GGGSCSEEEEEETTS
T ss_pred CCCeEEEEEEECCCCEEEEEcCCCeEEEEEhhh--CccCccc-----cc--CC-CCCEEEEEEC-CcCCCCEEEEEeCCC
Confidence 445566666666667788888888776544321 1000000 02 22 2344555533 31 235899999999
Q ss_pred CEEEEECCCccccceE-EeeeccCCCCccEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCC-----CCCceeeecCCCCC
Q 048012 274 SLRIWDVNEFKSQKQV-IKPKLARPGRVAVTTCAWDCDGKCIAGGIGDGSIQVWNLKPGWG-----SRPDIHVEKGHSDD 347 (616)
Q Consensus 274 ~v~iwd~~~~~~~~~~-~~~~~~~~~~~~v~~~~~sp~g~~l~~g~~dg~I~iwd~~~~~~-----~~~~~~~~~~h~~~ 347 (616)
.|+-..+.... ...- ........+ ..+..+........|+..+..|.+..+....-.. .......+. ....
T Consensus 91 ~iKr~~l~~~~-~~~~G~~~i~lkeg-D~l~~~~~~~~~~~ill~T~~G~~~r~~~~eip~~gR~a~Gv~~i~L~-~~d~ 167 (276)
T 3no0_A 91 YVKKIPLAEFE-YKAQGMPIIKLTEG-DEVVSIASSVDETHILLFTKKGRVARFSVREVPPSTPGARGVQGIKLE-KNDE 167 (276)
T ss_dssp EEEEEEGGGTT-TCSTTEECSCCCTT-CCEEEEEECCSSCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCC-TTCC
T ss_pred EEEEEEHHHhh-hhcCCeEEEecCCC-CEEEEEEEeCCCCEEEEEECCCEEEEEEhhhCCCcCCCCCCEEEEccC-CCCE
Confidence 99999876543 1110 000111112 2455555555666888889999988887532100 000111122 2245
Q ss_pred eEEEEEcCCCCeEEEEecCCcEEEEeCCC
Q 048012 348 ITALKFSSDGRILLSRSFDGSLKVWDLRK 376 (616)
Q Consensus 348 V~~l~~spdg~~l~s~s~Dg~v~lwd~~~ 376 (616)
|.++....++..|+..+..|.++...+..
T Consensus 168 vv~~~~~~~~~~ll~~T~~G~~kr~~~~e 196 (276)
T 3no0_A 168 TSGLRIWNGEPYLLVITAKGRVKKISHEE 196 (276)
T ss_dssp EEEEEEESSCSEEEEEETTSCEEEEEGGG
T ss_pred EEEEEEeCCCCEEEEEeCCCcEEEeEHHH
Confidence 66665556677888999999999988754
No 368
>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*
Probab=67.10 E-value=1.5e+02 Score=32.47 Aligned_cols=164 Identities=10% Similarity=0.041 Sum_probs=79.4
Q ss_pred cCCCCCCceEEEEecCCC-CeEEEEeCCCeEEEEECCCCeeeeEeeCceeEeecccCCC----cccceEEEEEcCCCCCE
Q 048012 191 LEPSEGHQVRNLSWSPTS-DRFLCVTGSAQAKIYDRDGLTLGEFVKGDMYIRDLKNTKG----HICGLTCGEWHPKTKET 265 (616)
Q Consensus 191 ~~~~~~~~v~~l~~sp~g-~~l~~~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~----h~~~v~~~~~~p~~~~~ 265 (616)
+.+..+..|.+|.++|.. ..+++++..+.|...+=.+..... +..... ....|.+++++|.....
T Consensus 9 ~~~~~~g~i~~i~~~p~~~~~~~a~~~~ggv~rS~DgG~tW~~----------~~~~~~~~~~~~~~i~~ia~dp~~~~~ 78 (789)
T 1sqj_A 9 VAIGGGGYITGIVAHPKTKDLLYARTDIGGAYRWDAGTSKWIP----------LNDFIEAQDMNIMGTESIALDPNNPDR 78 (789)
T ss_dssp CCCCBCSCEEEEEECSSSTTCEEEEESSSCEEEEETTTTEEEE----------SCTTCCGGGGGGCSEEEEEEETTEEEE
T ss_pred ccCCCCCcEEEEEECCCCCCEEEEEecCCCEEEecCCCCCeeE----------CccCCCcccccCCceeEEEECCCCCCE
Confidence 333345679999999964 556667766766655544433211 111111 23468999999865445
Q ss_pred EEEEeCCCC----EEEEECCCccccceEEee-ecc---CCCCccEEEEEECCC-CCeEEEEeCCCcEEEEeCCCCCCCCC
Q 048012 266 ILTSSEDGS----LRIWDVNEFKSQKQVIKP-KLA---RPGRVAVTTCAWDCD-GKCIAGGIGDGSIQVWNLKPGWGSRP 336 (616)
Q Consensus 266 l~s~s~Dg~----v~iwd~~~~~~~~~~~~~-~~~---~~~~~~v~~~~~sp~-g~~l~~g~~dg~I~iwd~~~~~~~~~ 336 (616)
++.+..... -.||--.+.......... ... ...+..+..++++|. .+.++++...+.|.. ....+. ...
T Consensus 79 i~~~~g~~~~~~~~~v~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~iav~p~~~~~v~~g~~~~gl~~-S~DgG~-TW~ 156 (789)
T 1sqj_A 79 LYLAQGRYVGDEWAAFYVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGTRTEGIWK-SSDRAK-TWT 156 (789)
T ss_dssp EEEEECSCTTSSCCEEEEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEEETTEEEEEEEECSSSCEEE-ESSTTS-SCE
T ss_pred EEEEeCccCCCcccEEEEECCCCCcceeccCCcccCccCCCccceeEEEEcCCCCCEEEEEeccCCEEE-ECCCCc-ccC
Confidence 555543321 344433332222222211 110 011113455677764 456666664444322 122221 112
Q ss_pred ceeeec---CCCCCeEEEEEcC-CCCeEEEEecC
Q 048012 337 DIHVEK---GHSDDITALKFSS-DGRILLSRSFD 366 (616)
Q Consensus 337 ~~~~~~---~h~~~V~~l~~sp-dg~~l~s~s~D 366 (616)
.+.... .....+..|.++| ++..|+.+..+
T Consensus 157 ~~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~ 190 (789)
T 1sqj_A 157 NVTSIPDAFTNGIGYTSVIFDPERNGTIYASATA 190 (789)
T ss_dssp EETTSCCCCSTTTCEEEEEECTTSTTCEEEEESS
T ss_pred CCccCccccCCCCCeEEEEECCCCCCEEEEEEcC
Confidence 221111 1124588999988 44566666654
No 369
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=66.66 E-value=19 Score=37.97 Aligned_cols=68 Identities=12% Similarity=0.178 Sum_probs=48.1
Q ss_pred ceeEEECCCCCEEEEeecccc-----ccCCCceEEEEeCCCCceEEEEecCCCCCeEEEEEcCCCCcEEEEec
Q 048012 393 QTNVAFSPDEQLFLTGTSVER-----ESTTGGLLCFYDREKLELVSRVGISPACSVVQCAWHPKLNQIFATAG 460 (616)
Q Consensus 393 v~~v~fspdg~~l~~gs~~~~-----~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~ 460 (616)
.-.|+|+|.|.++++-..... .......+.+.+..++++.+.+..+..+.++.++|+|+++.|++..-
T Consensus 478 PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfvniQ 550 (592)
T 3zwu_A 478 PDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVGIQ 550 (592)
T ss_dssp EEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEEEE
T ss_pred CcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEEEEE
Confidence 467899999997666432100 00123457778888888877777766788999999999988887754
No 370
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=65.28 E-value=1.1e+02 Score=30.16 Aligned_cols=158 Identities=13% Similarity=0.120 Sum_probs=88.0
Q ss_pred ccceEEEEEc---CC----CCCEEEEEeCCCCEEEEECCCccccceEEeeeccC--------CC----CccEEEEEECCC
Q 048012 250 ICGLTCGEWH---PK----TKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLAR--------PG----RVAVTTCAWDCD 310 (616)
Q Consensus 250 ~~~v~~~~~~---p~----~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~--------~~----~~~v~~~~~sp~ 310 (616)
...+..+.+. |. +....++=+....|.|+|+.+++............ +. ...+..++++|+
T Consensus 151 ~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~pd~~~~~~i~G~~~~~~~Gi~gIaLsp~ 230 (381)
T 3q6k_A 151 PTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFKAERPTKFDYGGKEYEFKAGIFGITLGDR 230 (381)
T ss_dssp GGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGSCCSCEEEEETTEEEEECCCEEEEEECCC
T ss_pred CCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCccccCcceEECCEEeEeccCceEEEecCC
Confidence 3567777776 22 22234444456789999998876543321100000 00 236888999998
Q ss_pred ----CCeEEEEeCCCcEEEEeCC-----CCCCCCCceeee--cCCCCCeEEEEEc-CCCCeEEEEecCCcEEEEeCCC-C
Q 048012 311 ----GKCIAGGIGDGSIQVWNLK-----PGWGSRPDIHVE--KGHSDDITALKFS-SDGRILLSRSFDGSLKVWDLRK-M 377 (616)
Q Consensus 311 ----g~~l~~g~~dg~I~iwd~~-----~~~~~~~~~~~~--~~h~~~V~~l~~s-pdg~~l~s~s~Dg~v~lwd~~~-~ 377 (616)
++.|+-....+. ++|.+. ... ....+..+ ++-.+.-..+++. .+|.++++--....|..|+..+ .
T Consensus 231 ~~~~~~~LYf~plss~-~ly~V~T~~L~~~~-~~~~v~~~G~kg~~s~~~~~~~D~~~G~ly~~~~~~~aI~~w~~~~~~ 308 (381)
T 3q6k_A 231 DSEGNRPAYYLAGSAI-KVYSVNTKELKQKG-GKLNPELLGNRGKYNDAIALAYDPKTKVIFFAEANTKQVSCWNTQKMP 308 (381)
T ss_dssp CTTSCCEEEEEESSCS-EEEEEEHHHHSSTT-CCCCCEEEEECCTTCCEEEEEECTTTCEEEEEESSSSEEEEEETTSCS
T ss_pred cCCCCeEEEEEECCCC-cEEEEEHHHhhCcc-hhhceEEeeecCCCCCcceEEEeCCCCeEEEEeccCCeEEEEeCCCCc
Confidence 777776665542 334332 211 11112211 1111334456775 6788888888889999999874 1
Q ss_pred C--CcceEecCCCCCCcceeEEECCCCCEEEEee
Q 048012 378 K--EPLKVFEDLPNNYAQTNVAFSPDEQLFLTGT 409 (616)
Q Consensus 378 ~--~~~~~~~~~~~~~~v~~v~fspdg~~l~~gs 409 (616)
- ....++..-+.-..+..+.+..+|.+.+...
T Consensus 309 ~~~~n~~~l~~d~~l~~pd~~~i~~~g~Lwv~sn 342 (381)
T 3q6k_A 309 LRMKNTDVVYTSSRFVFGTDISVDSKGGLWFMSN 342 (381)
T ss_dssp BCGGGEEEEEECTTCCSEEEEEECTTSCEEEEEC
T ss_pred cccCceEEEEECCCccccCeEEECCCCeEEEEEC
Confidence 1 1123332223445678888888887766665
No 371
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=64.69 E-value=92 Score=29.10 Aligned_cols=183 Identities=10% Similarity=-0.002 Sum_probs=90.9
Q ss_pred cEEEEEECCCCCEEEEEEcCCcEEEEeCCCCccccccceecCCCCCCceEEEEecCCCCeEEEEeCCCeEEEEECCCC-e
Q 048012 151 IVSALAVDHSGSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSDRFLCVTGSAQAKIYDRDGL-T 229 (616)
Q Consensus 151 ~V~~v~~sp~g~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~s~d~~v~vwd~~~~-~ 229 (616)
.|..|+.... ..++. . ||.|..|-.....+.-... .....|..++.... +.++.. ++.|..|-.+.. +
T Consensus 25 ~i~~ia~G~~-h~~~l-~-~G~v~~wG~n~~Gqlg~p~-----~~~~~i~~ia~G~~--hs~~l~-~G~v~~wG~n~~Gq 93 (282)
T 3qhy_B 25 GVDAIAGGYF-HGLAL-K-GGKVLGWGANLNGQLTMPA-----ATQSGVDAIAAGNY--HSLALK-DGEVIAWGGNEDGQ 93 (282)
T ss_dssp SCCEEEECSS-EEEEE-E-TTEEEEEECCSSSTTSCCG-----GGGSCCCEEEECSS--EEEEEE-TTEEEEEECCTTST
T ss_pred CCcEEEeCCC-eEEEE-E-CCEEEEEeCCCCCCCCCCc-----cCCCCEEEEEeCCC--EEEEEE-CCEEEEeeCCCCCC
Confidence 3455554332 22333 4 8888888765432211111 01123555655433 323334 889988876532 1
Q ss_pred eeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEEEECCCccccceEEeeeccCCCCccEEEEEECC
Q 048012 230 LGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWDC 309 (616)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp 309 (616)
+.. +.. . ...|..++... ...+.-. ||.|..|-......... ... ....|..++...
T Consensus 94 lg~---------P~~-~---~~~v~~ia~G~---~hs~al~-~G~v~~wG~n~~gqlg~-~~~-----~~~~i~~i~~G~ 150 (282)
T 3qhy_B 94 TTV---------PAE-A---RSGVDAIAAGA---WASYALK-DGKVIAWGDDSDGQTTV-PAE-----AQSGVTALDGGV 150 (282)
T ss_dssp TCC---------CGG-G---SSSEEEEEEET---TEEEEEE-TTEEEEEECCTTSTTSC-CGG-----GGSSEEEEEECS
T ss_pred CCC---------Ccc-c---CCCeEEEECcC---CEEEEEe-CCeEEEecCCCCCcCCC-Ccc-----CCCCeEEEEccc
Confidence 100 000 1 23566666543 3444445 99999998765333211 000 111466666543
Q ss_pred CCCeEEEEeCCCcEEEEeCCCCCCCCCceeeecCCCCCeEEEEEcCCCCeEEEEecCCcEEEEeCCCC
Q 048012 310 DGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHSDDITALKFSSDGRILLSRSFDGSLKVWDLRKM 377 (616)
Q Consensus 310 ~g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~v~lwd~~~~ 377 (616)
.. .++-. ||.|+.|-..... ..- ....-...|..|+..... .++. .||.|..|-....
T Consensus 151 ~~--~~~l~-~G~v~~wG~n~~g---qlg-~p~~~~~~v~~i~~G~~h-s~al--~~G~v~~wG~n~~ 208 (282)
T 3qhy_B 151 YT--ALAVK-NGGVIAWGDNYFG---QTT-VPAEAQSGVDDVAGGIFH-SLAL--KDGKVIAWGDNRY 208 (282)
T ss_dssp SE--EEEEE-TTEEEEEECCTTS---TTS-CCGGGGSSEEEEEECSSE-EEEE--ETTEEEEEECCTT
T ss_pred CE--EEEEE-CCEEEEecCCCCC---CCC-CceecCCCeEEEEecCCE-EEEE--ECCeEEEEECCCC
Confidence 32 22233 7999999765421 110 111113468888775443 3333 5999999976543
No 372
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=62.63 E-value=1.1e+02 Score=29.35 Aligned_cols=174 Identities=11% Similarity=0.075 Sum_probs=95.0
Q ss_pred cccEEEEEECC--CCCEEEEEEcCCcEEEEeCCCCcccc-ccceecCCCCCCceEEEEecCCCCeEEEEeCCCeEEEEEC
Q 048012 149 TKIVSALAVDH--SGSRVLSGSYDYTVRMYDFQGMNSRL-QSFRQLEPSEGHQVRNLSWSPTSDRFLCVTGSAQAKIYDR 225 (616)
Q Consensus 149 ~~~V~~v~~sp--~g~~lasgs~Dg~i~iwd~~~~~~~~-~~~~~~~~~~~~~v~~l~~sp~g~~l~~~s~d~~v~vwd~ 225 (616)
...|..+.+.. +..++++.+.+|.|+.-.+....... .....+....+..+..+........|+..+..|.+..+..
T Consensus 95 e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke~D~lv~~~~~~~~d~ill~T~~G~~~rf~~ 174 (327)
T 3uc1_A 95 ERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRDNDELVGAVLCSAGDDLLLVSANGQSIRFSA 174 (327)
T ss_dssp CCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBCCTTCCEEEEEEECTTCEEEEEETTSEEEEEEC
T ss_pred CEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhhccccCceEEEEECCCCEEEEEEEecCCCEEEEEECCCeEEEEEC
Confidence 33444445543 57799999999999999876432111 1122222223455666666666678888999999988887
Q ss_pred C--CCeeee-EeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEEEECCCccccc----eEEeeeccCCC
Q 048012 226 D--GLTLGE-FVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQK----QVIKPKLARPG 298 (616)
Q Consensus 226 ~--~~~~~~-~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~----~~~~~~~~~~~ 298 (616)
. .-.... ...|. .+..+.. ...|.++...+.+ ..|+..+..|.++.-.+....... -+........
T Consensus 175 ~~~eip~~gr~a~Gv----~~i~L~~-~d~Vv~~~~~~~~-~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~~~~~l~~~- 247 (327)
T 3uc1_A 175 TDEALRPMGRATSGV----QGMRFNI-DDRLLSLNVVREG-TYLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDRR- 247 (327)
T ss_dssp CTTTSCCCCTTSBCE----ESSCCCT-TCCEEEEEECCTT-CEEEEEETTSEEEEEEGGGSCBCCTTSCCEESSCCCTT-
T ss_pred cccccCcCCcCCCCe----eeecCCC-CCEEEEEEEECCC-CEEEEEeCCCcEEEEEHHHccccCcCCCcEEEEEecCC-
Confidence 6 322110 00111 1112222 3345555554433 478889999999988875433221 1111111110
Q ss_pred CccEEEEEECCCCCeEEEEeCCCcEEEEeCC
Q 048012 299 RVAVTTCAWDCDGKCIAGGIGDGSIQVWNLK 329 (616)
Q Consensus 299 ~~~v~~~~~sp~g~~l~~g~~dg~I~iwd~~ 329 (616)
...+..+........++..+.+|.+..++..
T Consensus 248 ~d~lv~~~~~~~~~~i~l~T~~G~~ir~~~~ 278 (327)
T 3uc1_A 248 RGRLVGALIVDDDSELYAVTSGGGVIRTAAR 278 (327)
T ss_dssp TCSEEEEEEECTTCEEEEEEGGGCEEEEEGG
T ss_pred CCeEEEEEEeCCCccEEEEcCCCeEEEEehh
Confidence 1123333333344566667778888777654
No 373
>2cn3_A Xyloglucanase, beta-1,4-xyloglucan hydrolase; glycosylhydrolase, family GH74; HET: GLC BGC GAL; 1.95A {Clostridium thermocellum} PDB: 2cn2_A*
Probab=58.80 E-value=2e+02 Score=31.12 Aligned_cols=165 Identities=13% Similarity=0.002 Sum_probs=71.7
Q ss_pred ccEEEEEECCC-CCEEEEEEcC-------CcEEEEeCCCCccccccceecCCC----C-CCceEEEEecCCC-CeEEEEe
Q 048012 150 KIVSALAVDHS-GSRVLSGSYD-------YTVRMYDFQGMNSRLQSFRQLEPS----E-GHQVRNLSWSPTS-DRFLCVT 215 (616)
Q Consensus 150 ~~V~~v~~sp~-g~~lasgs~D-------g~i~iwd~~~~~~~~~~~~~~~~~----~-~~~v~~l~~sp~g-~~l~~~s 215 (616)
..|.+|+++|. ...|+.+... +...||.-................ . .+.+..|+++|.. +.|+++.
T Consensus 72 ~~i~~i~~dp~~~~~v~v~~~~~~~~~~~~~~~l~~S~DgG~TW~~~~~~~~~~~~~~g~~~~~~l~~~p~~~~~v~~g~ 151 (737)
T 2cn3_A 72 YGVESIATDPVDPNRVYIVAGMYTNDWLPNMGAILRSTDRGETWEKTILPFKMGGNMPGRSMGERLAIDPNDNRILYLGT 151 (737)
T ss_dssp GCEEEEEECSSSTTCEEEEECSCSSSSSCCCCEEEEESSSSSSCEEEECSSCCCTTSTTTTSCCCEEECSSCTTCEEEEC
T ss_pred CCcceEEeCCCCCCEEEEEecccccccccCCccEEEeCCCCCCcccCCCCcccCCCcCcccccceEEECCCCCCEEEEee
Confidence 46899999984 3344444321 125666655444443333211110 0 1224678998864 5566665
Q ss_pred CCCeEEEEECCCCeeeeEeeCce----eEeec-ccCCCcccceEEEEEcCCCC------CEEEEEeCCCCEEEEECCCcc
Q 048012 216 GSAQAKIYDRDGLTLGEFVKGDM----YIRDL-KNTKGHICGLTCGEWHPKTK------ETILTSSEDGSLRIWDVNEFK 284 (616)
Q Consensus 216 ~d~~v~vwd~~~~~~~~~~~~~~----~~~~~-~~~~~h~~~v~~~~~~p~~~------~~l~s~s~Dg~v~iwd~~~~~ 284 (616)
..+.-.....+++.-+....... +..+. .........+..+.++|... ..|+.+..++.-.||--..+.
T Consensus 152 ~~g~gl~~S~DgG~tW~~~~~~~~~~~~~~~p~~~~~~~~~g~~~v~~dp~~~~~~~~~~~v~~~~~~~~~~v~~S~DgG 231 (737)
T 2cn3_A 152 RCGNGLWRSTDYGVTWSKVESFPNPGTYIYDPNFDYTKDIIGVVWVVFDKSSSTPGNPTKTIYVGVADKNESIYRSTDGG 231 (737)
T ss_dssp STTCCEEEESSTTSSCEECTTCCCCCCCBSCTTSTTTCSBCCEEEEEECGGGSCTTSCCSCEEEEESCSSCCEEEESSTT
T ss_pred ccCCcEEEeCCCCcceecccCCCCCcccccCcccccccCCCCEEEEEcCCCCcccCCCCCEEEEEecCCCccEEEEcCCC
Confidence 33221123344443332211100 00000 00112234577888887542 255555555432344433332
Q ss_pred ccceEEeeeccCCCCccEEEEEECCCCCeEEEE
Q 048012 285 SQKQVIKPKLARPGRVAVTTCAWDCDGKCIAGG 317 (616)
Q Consensus 285 ~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~g 317 (616)
....... ..........+.++|++.++++.
T Consensus 232 ~tW~~~~---~~p~~~~~~~~~~~~~~~l~~~~ 261 (737)
T 2cn3_A 232 VTWKAVP---GQPKGLLPHHGVLASNGMLYITY 261 (737)
T ss_dssp SCCEECT---TCCCSSEEEEEEECTTSEEEEEE
T ss_pred CceEECC---CCCCcccceEEEECCCCeEEEEe
Confidence 2222211 11111122455678766665554
No 374
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=58.59 E-value=30 Score=36.19 Aligned_cols=69 Identities=12% Similarity=0.163 Sum_probs=47.6
Q ss_pred ceeEEECCCCCEEEEeeccc-----cccCCCceEEEEeCCCCceEEEEecCCCCCeEEEEEcCCCCcEEEEecc
Q 048012 393 QTNVAFSPDEQLFLTGTSVE-----RESTTGGLLCFYDREKLELVSRVGISPACSVVQCAWHPKLNQIFATAGD 461 (616)
Q Consensus 393 v~~v~fspdg~~l~~gs~~~-----~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d 461 (616)
...|.|+++|.+.++..... ......+.|+.++..++++...+.......++.++|+|+++.|++....
T Consensus 478 PDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~vQH 551 (592)
T 4a9v_A 478 PDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVGIQH 551 (592)
T ss_dssp EEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEEEES
T ss_pred CCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEEEeC
Confidence 56799999999888432100 0011233678888888887666654445678999999999999988754
No 375
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=57.60 E-value=1.3e+02 Score=28.56 Aligned_cols=187 Identities=12% Similarity=0.120 Sum_probs=99.9
Q ss_pred CEEEEEeCCCCEEEEECCCccccceE---EeeeccCCCCccEEEEEECCCCCeEEEEeCCCcEEEEeCCC---CC--CCC
Q 048012 264 ETILTSSEDGSLRIWDVNEFKSQKQV---IKPKLARPGRVAVTTCAWDCDGKCIAGGIGDGSIQVWNLKP---GW--GSR 335 (616)
Q Consensus 264 ~~l~s~s~Dg~v~iwd~~~~~~~~~~---~~~~~~~~~~~~v~~~~~sp~g~~l~~g~~dg~I~iwd~~~---~~--~~~ 335 (616)
.++++.+.+|.|+--.+........- ........+. .+..+........++..+..|.++-+.... .. ...
T Consensus 9 ~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~lke~D-~l~~~~~~~~~~~ll~~T~~G~~~~~~~~~ip~~~r~~~G 87 (312)
T 1suu_A 9 NIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLNDGD-EIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSSRASKG 87 (312)
T ss_dssp EEEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCCCTTC-CEEEEEEEETTCEEEEEETTSEEEEEEGGGSCC-------
T ss_pred CEEEEEeCCCEEEEeEHHHhhccccCCCCceecccCCCC-EEEEEEEECCCCEEEEEECCCeEEEEEHHHCCCCCccCCC
Confidence 47889999999998877654322210 0001111222 344444444556777888899887776532 10 000
Q ss_pred Cc---eeeecCCCCCeEEEEEcC---CCCeEEEEecCCcEEEEeCCCCCC----cceEecCCCCCCcceeEEECCCCCEE
Q 048012 336 PD---IHVEKGHSDDITALKFSS---DGRILLSRSFDGSLKVWDLRKMKE----PLKVFEDLPNNYAQTNVAFSPDEQLF 405 (616)
Q Consensus 336 ~~---~~~~~~h~~~V~~l~~sp---dg~~l~s~s~Dg~v~lwd~~~~~~----~~~~~~~~~~~~~v~~v~fspdg~~l 405 (616)
.. ...+.. ...|.++...+ +..+|+..+..|.++...+..... -+..+ .+.....+..+........|
T Consensus 88 ~~i~~~l~l~~-~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i-~L~~~d~lv~~~~~~~~~~i 165 (312)
T 1suu_A 88 QNISELINLGD-QEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVI-KLNDKDFVTSAEIVFKDEKV 165 (312)
T ss_dssp CBGGGTSCCCT-TCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----CEECB-CCCTTCCEEEEEEECTTCEE
T ss_pred cChhhccCCCC-CCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccCCCcEEEE-ecCCCCEEEEEEEeCCCCEE
Confidence 00 111221 23455544332 466788889999999988754321 11122 22334445555555445566
Q ss_pred EEeeccccccCCCceEEEEeCCCC-------ceEEEEecCCCCCeEEEEEcCCCCcEEEEec
Q 048012 406 LTGTSVERESTTGGLLCFYDREKL-------ELVSRVGISPACSVVQCAWHPKLNQIFATAG 460 (616)
Q Consensus 406 ~~gs~~~~~~~~dg~i~iwd~~~~-------~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~ 460 (616)
+..+ ..|.+..+..... .-+..+....+..|..+..-..+..|++.+.
T Consensus 166 ~l~T-------~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~~~d~vv~~~~v~~~~~l~~vt~ 220 (312)
T 1suu_A 166 ICLS-------KKGSAFIFNSRDVRLTNRGTQGVCGMKLKEGDLFVKVLSVKENPYLLIVSE 220 (312)
T ss_dssp EEEE-------TTSEEEEEEGGGSCBCCTTBCCEECCCCCTTCCEEEEEECTTCSEEEEEET
T ss_pred EEEe-------CCCcEEEEEHHHccccCCCCCCeEeEEeCCCCEEEEEEEECCCCeEEEEEC
Confidence 6666 7888888876432 2233334444556666655544555666665
No 376
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=53.09 E-value=29 Score=36.61 Aligned_cols=60 Identities=25% Similarity=0.385 Sum_probs=39.6
Q ss_pred eEEEEEcCCCCeEEEEecC------------CcEEEEeCCCCCCcceEecCCCCCCcceeEEECCCCCEEEEee
Q 048012 348 ITALKFSSDGRILLSRSFD------------GSLKVWDLRKMKEPLKVFEDLPNNYAQTNVAFSPDEQLFLTGT 409 (616)
Q Consensus 348 V~~l~~spdg~~l~s~s~D------------g~v~lwd~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~gs 409 (616)
.-.|+|++.|++++.-..+ ..+.+.+..+ +. +..+-..+....++.++|+||++.|++.-
T Consensus 478 PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~-g~-~~rf~~~P~gaE~TG~~fspDg~tlfvni 549 (592)
T 3zwu_A 478 PDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPAT-GE-IRRFMVGPIGCEVTGISFSPDQKTLFVGI 549 (592)
T ss_dssp EEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTT-CC-EEEEEECCTTCEEEEEEECTTSSEEEEEE
T ss_pred CcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCC-Ce-EEEEEeCCCCccCcCeeECCCCCEEEEEE
Confidence 4679999999977765432 1244444443 23 33333345667899999999999888765
No 377
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=45.64 E-value=2.1e+02 Score=27.34 Aligned_cols=174 Identities=13% Similarity=0.175 Sum_probs=88.9
Q ss_pred ccEEEEEECC--CCCEEEEEEcCCcEEEEeCCCCcccc--ccceecCCCCCCceEEEEecCCCCeEEEEeCCCeEEEEEC
Q 048012 150 KIVSALAVDH--SGSRVLSGSYDYTVRMYDFQGMNSRL--QSFRQLEPSEGHQVRNLSWSPTSDRFLCVTGSAQAKIYDR 225 (616)
Q Consensus 150 ~~V~~v~~sp--~g~~lasgs~Dg~i~iwd~~~~~~~~--~~~~~~~~~~~~~v~~l~~sp~g~~l~~~s~d~~v~vwd~ 225 (616)
..|..+.+.. ++.+|+..+..|.++...+....... .....+....+..+..+......+.|+..+.+|.+..+..
T Consensus 93 ~Iv~~~~~~~~~~~~~ll~~T~~G~iKrt~l~e~~~~~r~~G~~ai~l~e~d~lv~~~~~~~~~~i~l~T~~G~~irf~~ 172 (323)
T 1wp5_A 93 EIIKAIPINDFELNGYFLFVTRNGMVKKTELKHYKAQRYSKPLTGINLKNDDQVVDVHLTDGMNELFLVTHNGYALWFDE 172 (323)
T ss_dssp CEEEEEEESCTTSSCEEEEEETTSEEEEEEGGGGCCSCCSSCEECSCCCTTCCEEEEEEECSCSEEEEEETTSEEEEEEG
T ss_pred EEEEEEEecccCCCceEEEEeCCCeEEEeEHHHhhhccccCceEEEEeCCCCEEEEEEEeCCCCEEEEEeCCCcEEEEEH
Confidence 3344445543 35689999999999999875432211 1222222223455666666556677888999999888886
Q ss_pred CCCeeeeE-eeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEEEECCCcccc----ceEEeeeccCCCCc
Q 048012 226 DGLTLGEF-VKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQ----KQVIKPKLARPGRV 300 (616)
Q Consensus 226 ~~~~~~~~-~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~----~~~~~~~~~~~~~~ 300 (616)
..-..... ..|- + ...+.. ...|.++.....+...|++.+..|..+..++...... +-+...........
T Consensus 173 ~ev~~~gR~a~GV---~-~i~L~~-~d~Vv~~~~~~~~~~~ll~vt~~G~gKr~~~~e~~~~~Rg~kGv~~~~~~~~~~~ 247 (323)
T 1wp5_A 173 SEVSIVGVRAAGV---K-GMNLKE-GDYIVSGQLITSKDESIVVATQRGAVKKMKLTEFEKATRAKRGVVILRELKANPH 247 (323)
T ss_dssp GGSCBCCSSCCCE---E-CCCCCT-TCCEEEEEEECCTTCEEEEEETTSEEEEEEGGGSCCCCTTSCCEECSCCCSSSCC
T ss_pred HHCcccCCCCcCE---E-EEEeCC-CCEEEEEEEEcCCCcEEEEEECCCceEEEEHHHccccCCCCCCEECeeecCCCCc
Confidence 53221100 0110 1 111222 2345555443333226788888888888777542111 11111110101111
Q ss_pred cEE-EEEECCCCCeEEEEeCCCcEEEEeCC
Q 048012 301 AVT-TCAWDCDGKCIAGGIGDGSIQVWNLK 329 (616)
Q Consensus 301 ~v~-~~~~sp~g~~l~~g~~dg~I~iwd~~ 329 (616)
.+. ++.+.. +..++..+..|.+..+.+.
T Consensus 248 ~l~~~~~v~~-~~~i~~it~~g~~ir~~~~ 276 (323)
T 1wp5_A 248 RISGFVVAQD-SDTIYLQTEKSFIETIKVG 276 (323)
T ss_dssp CEEEEEEECT-TCEEEEEETTSCEEEEEGG
T ss_pred eEEEEEEeCC-CCeEEEEeCCCeEEEEEhh
Confidence 233 333433 4456666677777666654
No 378
>1zvt_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 1.70A {Escherichia coli}
Probab=44.72 E-value=1.9e+02 Score=26.55 Aligned_cols=156 Identities=10% Similarity=0.022 Sum_probs=80.2
Q ss_pred EEEEEEcCCcEEEEeCCCCccccccceecCCCCCCceEEEEecCCCCeEEEEeCCCeEEEEECCCCeeeeEeeCceeEee
Q 048012 163 RVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSDRFLCVTGSAQAKIYDRDGLTLGEFVKGDMYIRD 242 (616)
Q Consensus 163 ~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~s~d~~v~vwd~~~~~~~~~~~~~~~~~~ 242 (616)
.+++.+.+|.|+--...... ...+....+..+..+......+.|+..+..|.++-+......... ..|. .+..
T Consensus 4 v~v~lT~~G~iKr~~~~~~~-----~~~~~lke~D~l~~~~~~~t~~~ll~~T~~Gr~~~~~~~elp~~r-~~G~-~i~~ 76 (256)
T 1zvt_A 4 VTIVLSQMGWVRSAKGHDID-----APGLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSAR-GQGE-PLTG 76 (256)
T ss_dssp EEEEEETTSEEEEEESSCCC-----STTSCCCTTCCEEEEEEEETTSCEEEEETTSEEEEECGGGSCCSS-SCCE-EGGG
T ss_pred EEEEEeCCCEEEEeeCCcCC-----ceeccCCCCCEEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCCCcC-CCCe-Eeee
Confidence 45667777877765543311 011111233445555555556678888888887666543211100 0111 1111
Q ss_pred cccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEEEECCCccccc--eEEeeeccCCCCccEEEEEEC-CCCCeEEEEeC
Q 048012 243 LKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQK--QVIKPKLARPGRVAVTTCAWD-CDGKCIAGGIG 319 (616)
Q Consensus 243 ~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~--~~~~~~~~~~~~~~v~~~~~s-p~g~~l~~g~~ 319 (616)
...+.. ...|..+....+ ...|+.++..|.++...+....... ....... ... ..+..+... ..+..|+..+.
T Consensus 77 ~i~L~~-~e~Iv~~~~~~~-~~~lll~T~~G~~Kr~~~~e~~~~~r~G~~~i~L-~~~-d~lv~~~~~~~~~~~i~l~T~ 152 (256)
T 1zvt_A 77 KLTLPP-GATVDHMLMESD-DQKLLMASDAGYGFVCTFNDLVARNRAGKALITL-PEN-AHVMPPVVIEDASDMLLAITQ 152 (256)
T ss_dssp TCCCCT-TCCEEEEECCCT-TCEEEEEBTTSEEEEEEGGGGCCCSTTCEECBCC-CTT-CCBCCCEECCCTTCEEEEEET
T ss_pred eecCCC-CCEEEEEEEeCC-CCEEEEEeCCCeEEEeEHHHhcccCcCceEEEEE-CCC-CEEEEEEEecCCCCEEEEEcC
Confidence 212222 234555533233 3578888999999999875432211 0111111 111 133344344 34567888889
Q ss_pred CCcEEEEeCC
Q 048012 320 DGSIQVWNLK 329 (616)
Q Consensus 320 dg~I~iwd~~ 329 (616)
+|.+..|.+.
T Consensus 153 ~G~~lrf~~~ 162 (256)
T 1zvt_A 153 AGRMLMFPVS 162 (256)
T ss_dssp TSEEEEEEGG
T ss_pred CCeEEEEEHH
Confidence 9999888875
No 379
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=43.09 E-value=51 Score=38.17 Aligned_cols=38 Identities=11% Similarity=0.065 Sum_probs=32.9
Q ss_pred ceeEEECCCCCEEEEeeccccccCCCceEEEEeCCCCceEEEEec
Q 048012 393 QTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREKLELVSRVGI 437 (616)
Q Consensus 393 v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~~~~~~~~~~ 437 (616)
+.+++..++..+|++-+ .|++++||++.+++++.+...
T Consensus 240 ~vs~~~~~~~~~lftL~-------~D~~LRiWsl~t~~~v~t~DL 277 (1139)
T 4fhn_B 240 IISMIFLSTYNVLVMLS-------LDYKLKVLDLSTNQCVETIEL 277 (1139)
T ss_dssp BSCCEEETTTTEEEEEB-------TTCEEEEEETTTTEEEEEEEC
T ss_pred eEEeeccCCccEEEEEe-------CCCEEEEEECCCCCeEEeech
Confidence 55667778889999999 899999999999999988754
No 380
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=36.96 E-value=1e+02 Score=32.22 Aligned_cols=62 Identities=23% Similarity=0.350 Sum_probs=40.4
Q ss_pred CeEEEEEcCCCCeEEEEec------------CCcEEEEeCCCCCCcceEecCCCCCCcceeEEECCCCCEEEEeec
Q 048012 347 DITALKFSSDGRILLSRSF------------DGSLKVWDLRKMKEPLKVFEDLPNNYAQTNVAFSPDEQLFLTGTS 410 (616)
Q Consensus 347 ~V~~l~~spdg~~l~s~s~------------Dg~v~lwd~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~gs~ 410 (616)
....|.|.++|.+.++... ...|..++..++ . +..+-..+....++.++|+||++.|+++-.
T Consensus 477 sPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tG-e-l~~fl~~P~~aEpnGiafSPD~ktLfV~vQ 550 (592)
T 4a9v_A 477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATG-E-IRRFMVGPIGCEVTGISFSPDQKTLFVGIQ 550 (592)
T ss_dssp CEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTC-C-EEEEEECCTTCEEEEEEECTTSSEEEEEEE
T ss_pred CCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCC-e-EEEEEeCCCCccccCCEECCCCCEEEEEEe
Confidence 4678999999988774321 114555665443 3 333323334456899999999999988763
No 381
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=36.07 E-value=48 Score=38.34 Aligned_cols=32 Identities=34% Similarity=0.383 Sum_probs=26.5
Q ss_pred CeEEEEEcCCCCeEEEEecCCcEEEEeCCCCC
Q 048012 347 DITALKFSSDGRILLSRSFDGSLKVWDLRKMK 378 (616)
Q Consensus 347 ~V~~l~~spdg~~l~s~s~Dg~v~lwd~~~~~ 378 (616)
.+.+++..++..+|++-+.|+++|||++.++.
T Consensus 239 ~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~ 270 (1139)
T 4fhn_B 239 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQ 270 (1139)
T ss_dssp CBSCCEEETTTTEEEEEBTTCEEEEEETTTTE
T ss_pred eeEEeeccCCccEEEEEeCCCEEEEEECCCCC
Confidence 35566677788899999999999999998753
No 382
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=33.49 E-value=3.5e+02 Score=26.38 Aligned_cols=179 Identities=13% Similarity=0.104 Sum_probs=91.4
Q ss_pred CCCCCEEEEEeCCCCEEEEECCCccccce----EEeeeccCCCCccEEEEEECCCCCeEEEEeCCCcEEEEe---CCCCC
Q 048012 260 PKTKETILTSSEDGSLRIWDVNEFKSQKQ----VIKPKLARPGRVAVTTCAWDCDGKCIAGGIGDGSIQVWN---LKPGW 332 (616)
Q Consensus 260 p~~~~~l~s~s~Dg~v~iwd~~~~~~~~~----~~~~~~~~~~~~~v~~~~~sp~g~~l~~g~~dg~I~iwd---~~~~~ 332 (616)
|+. .++++.+.+|.|+--.+.....+.. ...... .. ...+..+........|+..+..|.++.+. +....
T Consensus 5 ~~e-~~~v~lT~~GyIKr~~l~~y~~~~r~g~g~~~~~l-ke-~D~l~~~~~~~t~d~ll~fT~~G~~~~~~~~eip~~~ 81 (370)
T 3l6v_A 5 APE-DVVVTLSHAGYAKRQPVSAYRAQRRGGRGRSAAST-KE-EDFIDQLWLVNTHDTLLTFTSSGKVFWLPVHQLPEAG 81 (370)
T ss_dssp CCC-CEEEEEESSCEEEEEEHHHHHHTCCCCCCSEEEEC-SC-CCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCC
T ss_pred cCC-CEEEEEeCCCEEEEeeHHHhhhhccCCCCceeccc-CC-CCEEEEEEEecCCCEEEEEeCCCeEEEEEHHHCcCCC
Confidence 434 5899999999999876544322211 110111 11 12444444444556777778888877664 33220
Q ss_pred C--CCCc-ee--eecCCCCCeEEEEEcC---CCCeEEEEecCCcEEEEeCCCCCC----cceEecCCCCCCcceeEEECC
Q 048012 333 G--SRPD-IH--VEKGHSDDITALKFSS---DGRILLSRSFDGSLKVWDLRKMKE----PLKVFEDLPNNYAQTNVAFSP 400 (616)
Q Consensus 333 ~--~~~~-~~--~~~~h~~~V~~l~~sp---dg~~l~s~s~Dg~v~lwd~~~~~~----~~~~~~~~~~~~~v~~v~fsp 400 (616)
. .... .. .+. ....|.++..-. ++.+|+.++..|.++...+..... -+..+ .+.....+..+....
T Consensus 82 r~a~G~~i~~ll~L~-~~e~Iv~~~~~~~~~~~~~ll~~T~~G~vKrt~l~e~~~~~~~G~~ai-~L~~~d~lv~v~~~~ 159 (370)
T 3l6v_A 82 SNARGRPIINWIPLE-SGERVQAVLPVREYADNRYVFMATRNGTVKKTPLSEFAFRLARGKIAI-NLDEGDALVGVALTD 159 (370)
T ss_dssp TTSCCEEGGGSCCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCSCCTTCEESS-CCCTTCCEEEEEEEC
T ss_pred cccCCcCHhhccCCC-CCCEEEEEEEeccCCCCcEEEEEeCCCeEEEeEHHHhhcccCCceEEE-EeCCCCEEEEEEEeC
Confidence 0 0001 11 112 234455554332 456899999999999988754321 11112 122233444454444
Q ss_pred CCCEEEEeeccccccCCCceEEEEeCCCC-------ceEEEEecCCCCCeEEEEEcC
Q 048012 401 DEQLFLTGTSVERESTTGGLLCFYDREKL-------ELVSRVGISPACSVVQCAWHP 450 (616)
Q Consensus 401 dg~~l~~gs~~~~~~~~dg~i~iwd~~~~-------~~~~~~~~~~~~~v~~~~~~p 450 (616)
....|+..+ ..|.+..|....- .-+.-+....+..|..+..-+
T Consensus 160 ~~~~i~l~T-------~~G~~irf~~~~v~~~gR~a~GV~~i~L~~~d~Vv~~~~~~ 209 (370)
T 3l6v_A 160 GDRDVLLFA-------SNGKTVRFGESTVRSMGRTATGVRGIRLAKGEEVVSLIVSE 209 (370)
T ss_dssp SCCEEEEEE-------TTSEEEEEEGGGSCBCCTTCCCEECCCCCTTCCEEEEEEEC
T ss_pred CCceEEEEe-------CCCeEEEEEccccCccCCCCCCeeeEEeCCCCEEEEEEEec
Confidence 455566666 6777777764322 113333333445566655443
No 383
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster}
Probab=31.75 E-value=3.8e+02 Score=26.32 Aligned_cols=209 Identities=9% Similarity=-0.037 Sum_probs=98.1
Q ss_pred EEEEEECCCCCEEEEEEcCCcEEEEeCCCCccc---------cccceecCCCCCCceEEEEecCCCCeEEEEeCCCeEEE
Q 048012 152 VSALAVDHSGSRVLSGSYDYTVRMYDFQGMNSR---------LQSFRQLEPSEGHQVRNLSWSPTSDRFLCVTGSAQAKI 222 (616)
Q Consensus 152 V~~v~~sp~g~~lasgs~Dg~i~iwd~~~~~~~---------~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~s~d~~v~v 222 (616)
|..|+. -+...+.-..||.|..|-.....+. ......+. ....|..|+. -..+.++.+.+|.|+.
T Consensus 77 v~~va~--G~~h~~~l~~~G~v~~wG~n~~GqLG~~~~~~~~~~~P~~v~--~~~~i~~va~--G~~hs~al~~~G~v~~ 150 (423)
T 3mvd_K 77 AVDISA--GGMHNLVLTKSGDIYSFGCNDEGALGRDTSEDGSESKPDLID--LPGKALCISA--GDSHSACLLEDGRVFA 150 (423)
T ss_dssp EEEEEE--CSSEEEEEETTSCEEEEECCSSSTTCSCCCSTTSSSSCEECC--CSSCEEEEEE--CSSEEEEEETTSCEEE
T ss_pred ceEEee--CCCeEEEEeCCCeEEEeECCCCcCCCCCCcCCccccCCeEEc--CCCCEEEEEc--CcCeEEEEeCCCeEEE
Confidence 555554 3445666677888999865432110 00111111 1234555554 3355666788999999
Q ss_pred EEC--C-CCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEEEECCCccccceE----------
Q 048012 223 YDR--D-GLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQV---------- 289 (616)
Q Consensus 223 wd~--~-~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~~~---------- 289 (616)
|-. + ..++....... ....+... ....|..++. +....+.-..+|.|+.|-.....++...
T Consensus 151 wG~~~n~~GqlG~~~~~~-~~~p~~~~--~~~~i~~va~---G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~ 224 (423)
T 3mvd_K 151 WGSFRDSHGNMGLTIDGN-KRTPIDLM--EGTVCCSIAS---GADHLVILTTAGKVFTVGCAEQGQLGRLSERSISGEGR 224 (423)
T ss_dssp EECEECSSSEEESBTTBC-EEEEEESS--TTCCEEEEEE---CSSEEEEEETTSCEEEEECCTTSTTSSCCTTTTTSCST
T ss_pred EeCCCCCCCCcCcCCCCC-CceeeEec--CCCcEEEEec---CCCeEEEEecCCeEEEeeCCcCCccCCCcccccccccc
Confidence 975 3 22221110000 01111111 1234555555 3346666778999999975442211110
Q ss_pred ------Eeee-ccCCCCccEEEEEECCCCCeEEEEeCCCcEEEEeCCCCCC-------CCCceeeecCCCCCeEEEEEcC
Q 048012 290 ------IKPK-LARPGRVAVTTCAWDCDGKCIAGGIGDGSIQVWNLKPGWG-------SRPDIHVEKGHSDDITALKFSS 355 (616)
Q Consensus 290 ------~~~~-~~~~~~~~v~~~~~sp~g~~l~~g~~dg~I~iwd~~~~~~-------~~~~~~~~~~h~~~V~~l~~sp 355 (616)
..+. ........|..++-.. ...++.-..+|.|+.|-...... ..............|..|+..
T Consensus 225 ~~~~~~~~p~~v~~~~~~~v~~i~~g~-~~~~~~~~~~g~v~~wG~n~~gqlg~~~~~~~~~~~p~~~~~~~v~~ia~G- 302 (423)
T 3mvd_K 225 RGKRDLLRPTQLIITRAKPFEAIWATN-YCTFMRESQTQVIWATGLNNFKQLAHETKGKEFALTPIKTELKDIRHIAGG- 302 (423)
T ss_dssp TTTTTTSSCEEECCTTCCCEEEEEEET-TEEEEEETTTCCEEEEEECTTCTTSSCCTTCSEEEEEEEECCCSEEEEEEC-
T ss_pred cccccccCCeEEeecCCccEEEEEECC-cEEEEEECCCCeEEEEeCCCCCcCCCCCCCCceeeeeEEcCCCCeEEEEcc-
Confidence 0000 0001111344444321 12233335789999996543100 000001111112457777654
Q ss_pred CCCeEEEEecCCcEEEEeCC
Q 048012 356 DGRILLSRSFDGSLKVWDLR 375 (616)
Q Consensus 356 dg~~l~s~s~Dg~v~lwd~~ 375 (616)
..+.+....||.|+.|=..
T Consensus 303 -~~ht~alt~~G~v~~wG~n 321 (423)
T 3mvd_K 303 -QHHTVILTTDLKCSVVGRP 321 (423)
T ss_dssp -SSEEEEEETTCCEEEEECC
T ss_pred -cCeEEEEeCCCcEEEEECC
Confidence 3455555678999999654
No 384
>2zux_A YESW protein; beta-propeller, lyase, rhamnose complex; HET: RAM; 1.32A {Bacillus subtilis} PDB: 2z8s_A* 2z8r_A*
Probab=31.22 E-value=4.7e+02 Score=27.20 Aligned_cols=52 Identities=17% Similarity=0.279 Sum_probs=32.3
Q ss_pred CeEEEEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCC
Q 048012 218 AQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGS 274 (616)
Q Consensus 218 ~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~ 274 (616)
..|.+|++++..+++...+. .+ ..-.|...+....|.-+++.-|+....+|+
T Consensus 151 ~~l~aY~ldG~~LW~idlg~----ni-~aGa~yt~~~V~DlDGDGkaEIvv~TadGt 202 (591)
T 2zux_A 151 VLIDAYKLDGTKLWRINLGK----NI-RAGAHYTQFMVYDLDGDGKAEVAMKTADGT 202 (591)
T ss_dssp CEEEEECTTSCEEEEEECCT----TS-CCSTTSCCCEEECSSSSSSCEEEEEECTTC
T ss_pred cEEEEEECCCCEEEEEcCCC----Cc-ccccccCceeEEEcCCCCcceEEEEccCCc
Confidence 35667777766665432221 00 011356677888888888888888887776
No 385
>3a0f_A Xyloglucanase; beta-propeller, hydrolase; 2.50A {Geotrichum SP}
Probab=30.57 E-value=5.5e+02 Score=27.79 Aligned_cols=171 Identities=13% Similarity=0.039 Sum_probs=76.4
Q ss_pred CCCCceEEEEecCCC-CeEEEEeCCCeEEEEECCCCeeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCC
Q 048012 194 SEGHQVRNLSWSPTS-DRFLCVTGSAQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSED 272 (616)
Q Consensus 194 ~~~~~v~~l~~sp~g-~~l~~~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~D 272 (616)
..+..|.+|.++|.. ..+++++..+.|...+=.+......... .....+-.-......|.+++++|.....++.+...
T Consensus 18 g~~g~i~~i~~~p~~~~~~y~~~~~ggv~~S~DgG~tW~~~~~~-~~~~~~~~~~~~~~~~~~ia~dp~~~~~~~~~~g~ 96 (763)
T 3a0f_A 18 SGGGFISGLVAHPTEKDLIYARTDIGGTYRWNAAKWEWEPITDF-IINNALAGNGANLLGTESIALDPHNPDRLYLAQGD 96 (763)
T ss_dssp CBCSCEEEEEECSSSTTCEEEEESSSCEEEEETTTTEEEESCTT-CBTTCSSSCCCCCCSEEEEECCTTCTTCEEEEECS
T ss_pred cCCCceeEEEeCCCCCCEEEEEeccCcEEEECCCCCCeeECccC-ccccccCCCcccccceeEEEECCCCCCEEEEEecc
Confidence 355679999999976 4566666566655444333332211000 00000000000234689999998554455444321
Q ss_pred -----CCEEEEECCC-ccccceEEeeeccC---CCCccEEEEEECCC-CCeEEEEeCCCcEEEEeCCCCCCCCCceeeec
Q 048012 273 -----GSLRIWDVNE-FKSQKQVIKPKLAR---PGRVAVTTCAWDCD-GKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEK 342 (616)
Q Consensus 273 -----g~v~iwd~~~-~~~~~~~~~~~~~~---~~~~~v~~~~~sp~-g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~ 342 (616)
....||--.. ++.-..+....... .++.....++++|. ...++++...+.|.. ....+. ....+..+.
T Consensus 97 ~~~~~~~~~i~~S~DgG~TW~~~~~~~~~~~~~~g~~~~~~l~v~p~~~~~v~a~~~~~~l~~-S~DgG~-TW~~~~~~~ 174 (763)
T 3a0f_A 97 YVQWDPWAAFLVSDDRGKTFKQYRSPVPMGANDMGRNGGERLAVNPHWTDELWFGSRTQGLWR-STDRAQ-TWSRMNQLP 174 (763)
T ss_dssp CTTTCSCCEEEEESSTTSSCEEEECSSCCCTTSTTTTSBCCEEECTTSTTCEEEECSSSCEEE-ESSTTS-SCEECTTSC
T ss_pred cccCCCCceEEEECCCCCCceeccCCcccCccccCccccceEEECCCCCCEEEEEeCCCcEEE-ECCCCc-CccccccCc
Confidence 1234444333 33222222111100 11111235777774 345555655544432 222221 111111111
Q ss_pred C---CCCCeEEEEEcCC-CCeEEEEecCC
Q 048012 343 G---HSDDITALKFSSD-GRILLSRSFDG 367 (616)
Q Consensus 343 ~---h~~~V~~l~~spd-g~~l~s~s~Dg 367 (616)
. ....+..|+++|. ...|+.+..++
T Consensus 175 ~~~~~~~~~~~i~~~p~~~~~~~~~~~~~ 203 (763)
T 3a0f_A 175 DSSTYGIGIISVIFDPKNVGTAYVASHAV 203 (763)
T ss_dssp CCSCTTTCEEEEEECSSSTTCEEEEESST
T ss_pred ccCCCccceEEEEECCCCCCEEEEEEeCC
Confidence 1 1134788999884 34555555554
No 386
>1zvt_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 1.70A {Escherichia coli}
Probab=29.86 E-value=3.2e+02 Score=24.91 Aligned_cols=137 Identities=13% Similarity=0.015 Sum_probs=70.1
Q ss_pred eEEEEeCCCcEEEEeCCCCCCCCCceeeecCCCCCeEEEEEcCCCCeEEEEecCCcEEEEeCCC------CCCcceEecC
Q 048012 313 CIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHSDDITALKFSSDGRILLSRSFDGSLKVWDLRK------MKEPLKVFED 386 (616)
Q Consensus 313 ~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~v~lwd~~~------~~~~~~~~~~ 386 (616)
.+++.+.+|.|+--....- ......+... ..+..+........|+..+..|.++-+.+.. .+.++..+-.
T Consensus 4 v~v~lT~~G~iKr~~~~~~---~~~~~~lke~-D~l~~~~~~~t~~~ll~~T~~Gr~~~~~~~elp~~r~~G~~i~~~i~ 79 (256)
T 1zvt_A 4 VTIVLSQMGWVRSAKGHDI---DAPGLNYKAG-DSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLT 79 (256)
T ss_dssp EEEEEETTSEEEEEESSCC---CSTTSCCCTT-CCEEEEEEEETTSCEEEEETTSEEEEECGGGSCCSSSCCEEGGGTCC
T ss_pred EEEEEeCCCEEEEeeCCcC---CceeccCCCC-CEEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCCCcCCCCeEeeeeec
Confidence 4556677888876654431 0111123333 3344444444455666677788866655432 1222211112
Q ss_pred CCCCCcceeEEECCCCCEEEEeeccccccCCCceEEEEeCCCCce-----EEEEecCCCCCeEEEEEc-CCCCcEEEEec
Q 048012 387 LPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREKLEL-----VSRVGISPACSVVQCAWH-PKLNQIFATAG 460 (616)
Q Consensus 387 ~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~~~~-----~~~~~~~~~~~v~~~~~~-p~~~~l~~~~~ 460 (616)
+.....|..+....++.+|+.++ ..|.++...+..... ...+.+.....+..+... .....|+..+.
T Consensus 80 L~~~e~Iv~~~~~~~~~~lll~T-------~~G~~Kr~~~~e~~~~~r~G~~~i~L~~~d~lv~~~~~~~~~~~i~l~T~ 152 (256)
T 1zvt_A 80 LPPGATVDHMLMESDDQKLLMAS-------DAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQ 152 (256)
T ss_dssp CCTTCCEEEEECCCTTCEEEEEB-------TTSEEEEEEGGGGCCCSTTCEECBCCCTTCCBCCCEECCCTTCEEEEEET
T ss_pred CCCCCEEEEEEEeCCCCEEEEEe-------CCCeEEEeEHHHhcccCcCceEEEEECCCCEEEEEEEecCCCCEEEEEcC
Confidence 33344566664434567777778 889998888643311 222222333455555554 23455666665
No 387
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=29.24 E-value=73 Score=34.31 Aligned_cols=37 Identities=16% Similarity=0.237 Sum_probs=30.6
Q ss_pred cceeEEECCCCCEEEEeeccccccCCCceEEEEeCCCCceEEEEec
Q 048012 392 AQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDREKLELVSRVGI 437 (616)
Q Consensus 392 ~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iwd~~~~~~~~~~~~ 437 (616)
.|.++.+ +..+|++-+ .|.++++|++.+++++.....
T Consensus 223 ~Is~~~~--~~~fLftL~-------~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 223 VISCKLF--HERYLIVLT-------QNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp EEEEEEE--TTTEEEEEE-------TTCEEEEEETTTTEEEEEEET
T ss_pred eEEEecc--CCcEEEEEE-------cCCeEEEEEcCCCceEEeecc
Confidence 3555555 477999988 899999999999999998876
No 388
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=26.29 E-value=3.9e+02 Score=24.65 Aligned_cols=182 Identities=15% Similarity=0.120 Sum_probs=92.6
Q ss_pred cEEEEEECCCCCEEEEEEcCCcEEEEeCCCCccccccceecCCCCCCceEEEEecCCCCeEEEEeCCCeEEEEECCCC-e
Q 048012 151 IVSALAVDHSGSRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPSEGHQVRNLSWSPTSDRFLCVTGSAQAKIYDRDGL-T 229 (616)
Q Consensus 151 ~V~~v~~sp~g~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~s~d~~v~vwd~~~~-~ 229 (616)
.|..|+....- .++. . ||.|..|-.....+.-... .+ ...|..++.... +.++.+ ++.|..|-.+.. +
T Consensus 64 ~i~~ia~G~~h-s~~l-~-~G~v~~wG~n~~Gqlg~P~-~~----~~~v~~ia~G~~--hs~al~-~G~v~~wG~n~~gq 132 (282)
T 3qhy_B 64 GVDAIAAGNYH-SLAL-K-DGEVIAWGGNEDGQTTVPA-EA----RSGVDAIAAGAW--ASYALK-DGKVIAWGDDSDGQ 132 (282)
T ss_dssp CCCEEEECSSE-EEEE-E-TTEEEEEECCTTSTTCCCG-GG----SSSEEEEEEETT--EEEEEE-TTEEEEEECCTTST
T ss_pred CEEEEEeCCCE-EEEE-E-CCEEEEeeCCCCCCCCCCc-cc----CCCeEEEECcCC--EEEEEe-CCeEEEecCCCCCc
Confidence 35555543332 2333 4 8889888765432211111 11 224666665543 445556 999999976532 1
Q ss_pred eeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEEEECCCccccceEEeeeccCCCCccEEEEEECC
Q 048012 230 LGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWDC 309 (616)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp 309 (616)
+. ........|..++.-. ...+.-. ||.|..|-......... +... ...|..++-..
T Consensus 133 lg-------------~~~~~~~~i~~i~~G~---~~~~~l~-~G~v~~wG~n~~gqlg~---p~~~---~~~v~~i~~G~ 189 (282)
T 3qhy_B 133 TT-------------VPAEAQSGVTALDGGV---YTALAVK-NGGVIAWGDNYFGQTTV---PAEA---QSGVDDVAGGI 189 (282)
T ss_dssp TS-------------CCGGGGSSEEEEEECS---SEEEEEE-TTEEEEEECCTTSTTSC---CGGG---GSSEEEEEECS
T ss_pred CC-------------CCccCCCCeEEEEccc---CEEEEEE-CCEEEEecCCCCCCCCC---ceec---CCCeEEEEecC
Confidence 10 0111223466665543 2333334 79999998765433221 1100 12466666543
Q ss_pred CCCeEEEEeCCCcEEEEeCCCCCCCCCceeeecCCCCCeEEEEEcCCCCeEEEEecCCcEEEEeCCC
Q 048012 310 DGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHSDDITALKFSSDGRILLSRSFDGSLKVWDLRK 376 (616)
Q Consensus 310 ~g~~l~~g~~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~v~lwd~~~ 376 (616)
.. .++. .||.|+.|-..... ..- .-......|..|+......+++ . ||.|..|=...
T Consensus 190 ~h-s~al--~~G~v~~wG~n~~g---qlg-~p~~~~~~v~~i~~G~~h~~al--~-~g~v~~wG~n~ 246 (282)
T 3qhy_B 190 FH-SLAL--KDGKVIAWGDNRYK---QTT-VPTEALSGVSAIASGEWYSLAL--K-NGKVIAWGSSR 246 (282)
T ss_dssp SE-EEEE--ETTEEEEEECCTTS---TTC-CCGGGGSSCCEEEECSSCEEEE--E-TTEEEEESTTC
T ss_pred CE-EEEE--ECCeEEEEECCCCC---CCC-CCcccCCCceEEEcCCCEEEEE--E-CCEEEEecCCC
Confidence 32 3333 59999999765421 111 0011123577887654433333 3 99999997654
No 389
>3mez_B Mannose-specific lectin 3 chain 2; heterotetramer, sugar binding protein; 1.94A {Crocus vernus} SCOP: b.78.1.0
Probab=26.24 E-value=2.3e+02 Score=21.99 Aligned_cols=46 Identities=7% Similarity=-0.036 Sum_probs=26.9
Q ss_pred EEEEEcCCCCcEEEEeccCCCCceEEEecccCC-CCCcEEEEecCCcceeccc
Q 048012 444 VQCAWHPKLNQIFATAGDKSQGGTHILYDPRLS-ERGALVCVARAPRKKSVDD 495 (616)
Q Consensus 444 ~~~~~~p~~~~l~~~~~d~~~~~~~~v~~~~~s-~~g~~l~s~~~d~~~~~wd 495 (616)
..+.+..+|+.++.... + ..+|.-... ..+.+.++--.||.+++.+
T Consensus 59 ~~l~l~~dGNLVl~d~~----~--~~iW~S~t~~~~~~~~~~L~~dGnlvly~ 105 (113)
T 3mez_B 59 CFMRLGHSGELDITDDR----L--NTVFVSNTVGQEGDYVLILQINGQAVVYG 105 (113)
T ss_dssp CEEEECTTSCEEEECTT----S--CEEEECSCCCSSSCCEEEECTTSCEEEEC
T ss_pred EEEEEeCCCcEEEECCC----C--CEEEECCCcCCCCCEEEEEcCCceEEEec
Confidence 45677788877776432 2 246765432 2344555666777777665
No 390
>2q2k_A Hypothetical protein; protein-DNA, partition, segregation, PARB, DNA binding protein/DNA complex; HET: DNA 5IU EPE; 3.00A {Staphylococcus aureus}
Probab=25.52 E-value=27 Score=22.96 Aligned_cols=17 Identities=29% Similarity=0.595 Sum_probs=12.4
Q ss_pred ChHHHHHhhHHHHccCC
Q 048012 574 DPREAILKYADVAAKDP 590 (616)
Q Consensus 574 dpre~~l~~~~~~~~~p 590 (616)
..||||-+|.++-.+||
T Consensus 54 hirealrryieeigenp 70 (70)
T 2q2k_A 54 HIREALRRYIEEIGENP 70 (70)
T ss_dssp HHHHHHHHHHHHCC---
T ss_pred HHHHHHHHHHHHhccCC
Confidence 36999999999988887
No 391
>3a0f_A Xyloglucanase; beta-propeller, hydrolase; 2.50A {Geotrichum SP}
Probab=24.97 E-value=6.8e+02 Score=27.03 Aligned_cols=165 Identities=8% Similarity=0.057 Sum_probs=77.9
Q ss_pred CCcccEEEEEECCCC-CEEEEEEcCCcEEEEeCCCCccccccceecC-----C---CCCCceEEEEecCC-CCeEEEEeC
Q 048012 147 GHTKIVSALAVDHSG-SRVLSGSYDYTVRMYDFQGMNSRLQSFRQLE-----P---SEGHQVRNLSWSPT-SDRFLCVTG 216 (616)
Q Consensus 147 ~H~~~V~~v~~sp~g-~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~-----~---~~~~~v~~l~~sp~-g~~l~~~s~ 216 (616)
+-.+.|.+|+++|.+ ..++.+...|.|.... ........+.... . .....|.+|+++|. .+.++++..
T Consensus 18 g~~g~i~~i~~~p~~~~~~y~~~~~ggv~~S~--DgG~tW~~~~~~~~~~~~~~~~~~~~~~~~ia~dp~~~~~~~~~~g 95 (763)
T 3a0f_A 18 SGGGFISGLVAHPTEKDLIYARTDIGGTYRWN--AAKWEWEPITDFIINNALAGNGANLLGTESIALDPHNPDRLYLAQG 95 (763)
T ss_dssp CBCSCEEEEEECSSSTTCEEEEESSSCEEEEE--TTTTEEEESCTTCBTTCSSSCCCCCCSEEEEECCTTCTTCEEEEEC
T ss_pred cCCCceeEEEeCCCCCCEEEEEeccCcEEEEC--CCCCCeeECccCccccccCCCcccccceeEEEECCCCCCEEEEEec
Confidence 446789999999976 5666666666554443 2222222221100 0 02345999999984 455555543
Q ss_pred C-----CeEEEE-ECCCCeeeeEeeCceeEeecccCCCc-c--cceEEEEEcCCCCCEEEEEeCCCCEEEEECCCccccc
Q 048012 217 S-----AQAKIY-DRDGLTLGEFVKGDMYIRDLKNTKGH-I--CGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQK 287 (616)
Q Consensus 217 d-----~~v~vw-d~~~~~~~~~~~~~~~~~~~~~~~~h-~--~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~ 287 (616)
. ....|| ..+++.-++..... . ...+. . ..+..++++|.....++.+...+.| |--.++....
T Consensus 96 ~~~~~~~~~~i~~S~DgG~TW~~~~~~-----~-~~~~~~~g~~~~~~l~v~p~~~~~v~a~~~~~~l--~~S~DgG~TW 167 (763)
T 3a0f_A 96 DYVQWDPWAAFLVSDDRGKTFKQYRSP-----V-PMGANDMGRNGGERLAVNPHWTDELWFGSRTQGL--WRSTDRAQTW 167 (763)
T ss_dssp SCTTTCSCCEEEEESSTTSSCEEEECS-----S-CCCTTSTTTTSBCCEEECTTSTTCEEEECSSSCE--EEESSTTSSC
T ss_pred ccccCCCCceEEEECCCCCCceeccCC-----c-ccCccccCccccceEEECCCCCCEEEEEeCCCcE--EEECCCCcCc
Confidence 2 112333 34444433321100 0 00000 0 1124578888655566666654433 3222222222
Q ss_pred eEEeeec-cCCCCccEEEEEECCC-CCeEEEEeCCC
Q 048012 288 QVIKPKL-ARPGRVAVTTCAWDCD-GKCIAGGIGDG 321 (616)
Q Consensus 288 ~~~~~~~-~~~~~~~v~~~~~sp~-g~~l~~g~~dg 321 (616)
....... .......+..++++|. ...++++..++
T Consensus 168 ~~~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~ 203 (763)
T 3a0f_A 168 SRMNQLPDSSTYGIGIISVIFDPKNVGTAYVASHAV 203 (763)
T ss_dssp EECTTSCCCSCTTTCEEEEEECSSSTTCEEEEESST
T ss_pred cccccCcccCCCccceEEEEECCCCCCEEEEEEeCC
Confidence 2111100 0111225778899875 34566666665
No 392
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=24.44 E-value=4.9e+02 Score=25.20 Aligned_cols=217 Identities=14% Similarity=0.170 Sum_probs=103.3
Q ss_pred cEEEEEECCCCCEEEEEEcCCcEEEEeCCCCcc-------ccccceecCCCCCCceEEEEecCCCCeEEEEeCCCeEEEE
Q 048012 151 IVSALAVDHSGSRVLSGSYDYTVRMYDFQGMNS-------RLQSFRQLEPSEGHQVRNLSWSPTSDRFLCVTGSAQAKIY 223 (616)
Q Consensus 151 ~V~~v~~sp~g~~lasgs~Dg~i~iwd~~~~~~-------~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~s~d~~v~vw 223 (616)
.|..++++.-....+.-..||.|..|-.....+ .......+.......|..|+-. ..+.++...++.|+.|
T Consensus 106 ~~~~v~i~~G~~h~~al~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~va~G--~~hs~alt~~G~v~~w 183 (389)
T 3kci_A 106 FIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLGHGNRSPCDRPRVIESLRGIEVVDVAAG--GAHSACVTAAGDLYTW 183 (389)
T ss_dssp CEEEEEECTTCSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEEC--SSEEEEEETTSCEEEE
T ss_pred ceeEEEECcCCCeEEEEcCCCCEEEEeCCCCCcCCCCCCccCcCCeEecccCCCeEEEEEeC--cCeEEEEeCCCeEEEe
Confidence 345566666666777778899999996542111 0111122222233345555543 4556677889999999
Q ss_pred ECCCC-eeeeEeeCc-eeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEEEECCCccccc-----eEEeee-cc
Q 048012 224 DRDGL-TLGEFVKGD-MYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQK-----QVIKPK-LA 295 (616)
Q Consensus 224 d~~~~-~~~~~~~~~-~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~~~-----~~~~~~-~~ 295 (616)
-.... ++..-.... .....+..+. ...|..++.... ....+.-..||.|..|-......+. ....+. ..
T Consensus 184 G~n~~GqLG~~~~~~~~~p~~v~~~~--~~~v~~ia~G~g-~~~t~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~ 260 (389)
T 3kci_A 184 GKGRYGRLGHSDSEDQLKPKLVEALQ--GHRVVDIACGSG-DAQTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKID 260 (389)
T ss_dssp ECCGGGTTCSSSCCCEEEEEECGGGT--TSCEEEEEECCS-SCEEEEEETTTEEEEEECCGGGTTSSSSCCCEEEEEECG
T ss_pred CCCCCCCcCCCCCcccccceEecccC--CCeEEEEEEcCC-CcEEEEEccCCEEEEEeCCCCCCCCCCCCCCccccEEec
Confidence 75421 110000000 0011111111 224555554321 1456666789999999765422210 001111 11
Q ss_pred CCCCccEEEEEECCCCCeEEEEeCCCcEEEEeCCCCC----CCCC----ceeeecCCCCCeEEEEEcCCCCeEEEEecCC
Q 048012 296 RPGRVAVTTCAWDCDGKCIAGGIGDGSIQVWNLKPGW----GSRP----DIHVEKGHSDDITALKFSSDGRILLSRSFDG 367 (616)
Q Consensus 296 ~~~~~~v~~~~~sp~g~~l~~g~~dg~I~iwd~~~~~----~~~~----~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg 367 (616)
......|..++.. ....++-..+|.|+.|-..... .... +..........|..|+.. ....+....||
T Consensus 261 ~~~~~~v~~v~~G--~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~v~~ia~G--~~h~~al~~~G 336 (389)
T 3kci_A 261 SLTGLGVVKVECG--SQFSVALTKSGAVYTWGKGDYHRLGHGSDDHVRRPRQVQGLQGKKVIAIATG--SLHCVCCTEDG 336 (389)
T ss_dssp GGTTSCEEEEEEE--TTEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTCCEEEEEEC--SSEEEEEETTC
T ss_pred ccCCCcEEEEeCC--CCEEEEEeCCCeEEEEeCCCCCCCCCCCCccccCCeEeccCCCCCEEEEEec--cCeEEEECCCC
Confidence 0111135555443 3344555789999999654210 0000 011111112346666654 33445556788
Q ss_pred cEEEEeCCC
Q 048012 368 SLKVWDLRK 376 (616)
Q Consensus 368 ~v~lwd~~~ 376 (616)
.|+.|=...
T Consensus 337 ~v~~wG~n~ 345 (389)
T 3kci_A 337 EVYTWGDND 345 (389)
T ss_dssp CEEEEECCT
T ss_pred CEEEeeCCC
Confidence 888887654
No 393
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=23.08 E-value=86 Score=33.77 Aligned_cols=30 Identities=7% Similarity=0.264 Sum_probs=25.6
Q ss_pred ccEEEEEECCCCCEEEEEEcCCcEEEEeCCCC
Q 048012 150 KIVSALAVDHSGSRVLSGSYDYTVRMYDFQGM 181 (616)
Q Consensus 150 ~~V~~v~~sp~g~~lasgs~Dg~i~iwd~~~~ 181 (616)
..|.|+.+. ..+|++-+.|.++|+|++.++
T Consensus 222 ~~Is~~~~~--~~fLftL~~Dh~LRiWsL~t~ 251 (729)
T 3f7f_A 222 SVISCKLFH--ERYLIVLTQNCHLKIWDLTSF 251 (729)
T ss_dssp CEEEEEEET--TTEEEEEETTCEEEEEETTTT
T ss_pred ceEEEeccC--CcEEEEEEcCCeEEEEEcCCC
Confidence 568887774 679999999999999999875
No 394
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A
Probab=22.19 E-value=5.5e+02 Score=25.01 Aligned_cols=254 Identities=14% Similarity=0.104 Sum_probs=0.0
Q ss_pred EEECCCCCEEEEEEcCC-cEEEEeCC-----CCccccccceecCCCCCCceEEEEecCCCCeEEEEeCCCeEEEEECCCC
Q 048012 155 LAVDHSGSRVLSGSYDY-TVRMYDFQ-----GMNSRLQSFRQLEPSEGHQVRNLSWSPTSDRFLCVTGSAQAKIYDRDGL 228 (616)
Q Consensus 155 v~~sp~g~~lasgs~Dg-~i~iwd~~-----~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~~~s~d~~v~vwd~~~~ 228 (616)
+.++.-..+.+.-..|+ .|+.|-.. +.......+.......-..+....++.-..+.++.+.++.|+.|-.+..
T Consensus 71 ~~va~G~~ht~al~~~gg~v~~wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~ia~G~~h~~alt~~G~v~~wG~n~~ 150 (406)
T 4d9s_A 71 VSVTCGADHTVAYSQSGMEVYSWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIACGDSHCLAVTMEGEVQSWGRNQN 150 (406)
T ss_dssp EEEEECSSEEEEEETTTTEEEEEECCGGGTTCSSSCCCEEEEEECGGGTTCCEEEEEECSSEEEEEETTSCEEEEECCTT
T ss_pred EEEEeCcceEEEEECCCCEEEEEcCCCCcCCCCCCCCccccceEecccCCCCEEEEEEChhheEEEcCCCcEEEeCCCCC
Q ss_pred eeeeEeeCceeEeecccCCCcccceEEEEEcCCCCCEEEEEeCCCCEEEEECCCccc------cceEEeeeccCCCCccE
Q 048012 229 TLGEFVKGDMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKS------QKQVIKPKLARPGRVAV 302 (616)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~Dg~v~iwd~~~~~~------~~~~~~~~~~~~~~~~v 302 (616)
-....-.......+.....-....|..++. +....+.-..+|.|+.|-...... ................|
T Consensus 151 GqLG~g~~~~~~~p~~v~~~~~~~i~~va~---G~~hs~alt~~G~v~~wG~n~~GqlG~g~~~~~~~p~~v~~~~~~~i 227 (406)
T 4d9s_A 151 GQLGLGDTEDSLVPQKIQAFEGIRIKMVAA---GAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKM 227 (406)
T ss_dssp STTCSSSCCCEEEEEECGGGTTCCEEEEEE---CSSEEEEEETTSCEEEEECCTTSTTCSSSSCCEEEEEECCCSTTCCE
T ss_pred ccCCCCCCCCcccceEecccCCCcEEEEec---CCCeEEEEeCCCCEEEeeCCCCCCCCCCCCCCcCccEEecccCCceE
Q ss_pred EEEEECCCCCeEEEEeCCCcEEEEeCCCC--------CCCCCceeeecCCCCCeEEEEEcCCCCeEEEEecCCcEEEEeC
Q 048012 303 TTCAWDCDGKCIAGGIGDGSIQVWNLKPG--------WGSRPDIHVEKGHSDDITALKFSSDGRILLSRSFDGSLKVWDL 374 (616)
Q Consensus 303 ~~~~~sp~g~~l~~g~~dg~I~iwd~~~~--------~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~v~lwd~ 374 (616)
..++.. ....++-..+|.|+.|-.... .....+..........|..|+.. ..+.+....||.|+.|=.
T Consensus 228 ~~va~G--~~ht~~l~~~G~v~~wG~n~~GqlG~g~~~~~~~p~~v~~~~~~~v~~i~~G--~~hs~alt~~G~v~~wG~ 303 (406)
T 4d9s_A 228 SMVACG--WRHTISVSYSGALYTYGWSKYGQLGHGDLEDHLIPHKLEALSNSFISQISGG--WRHTMALTSDGKLYGWGW 303 (406)
T ss_dssp EEEEEC--SSEEEEEETTCCEEEEECCTTSTTCSSSCCCEEEEEECGGGTTSCEEEEEEC--SSEEEEEETTSCEEEEEC
T ss_pred EEEEEC--CCcEEEEcCCCCEEEeeCCCCCCCCCCCCcCccccEEecccCCCCEEEEEec--CCEEEEEcCCCeEEEeeC
Q ss_pred CCCCCc---------ceEecCCCCCCcceeEEECCCCCEEEEeeccccccCCCceEEEE
Q 048012 375 RKMKEP---------LKVFEDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFY 424 (616)
Q Consensus 375 ~~~~~~---------~~~~~~~~~~~~v~~v~fspdg~~l~~gs~~~~~~~~dg~i~iw 424 (616)
....+. .-..........|..|+......++++ .+|.|+.|
T Consensus 304 n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~va~G~~hs~alt---------~~G~v~~w 353 (406)
T 4d9s_A 304 NKFGQVGVGNNLDQCSPVQVRFPDDQKVVQVSCGWRHTLAVT---------ERNNVFAW 353 (406)
T ss_dssp CTTSTTCSSSSSCEEEEEEECCGGGCCEEEEEECSSEEEEEE---------TTSCEEEE
T ss_pred CCCCCCCCCCCCCCccCEEEeccCCCcEEEEEeCCCeEEEEe---------CCCCEEEe
No 395
>3al9_A Plexin-A2; beta-propeller, membrane protein, signaling protein; HET: NAG; 2.10A {Mus musculus} PDB: 3al8_B*
Probab=21.39 E-value=1.4e+02 Score=30.92 Aligned_cols=74 Identities=9% Similarity=0.129 Sum_probs=45.0
Q ss_pred cccEEEEEECCCC--CEEEEEEcCCcEEEEeCCCCccccccceecCCC-CCCceE-EEEecCCCCeEEEEeCCCeEEE
Q 048012 149 TKIVSALAVDHSG--SRVLSGSYDYTVRMYDFQGMNSRLQSFRQLEPS-EGHQVR-NLSWSPTSDRFLCVTGSAQAKI 222 (616)
Q Consensus 149 ~~~V~~v~~sp~g--~~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~~~-~~~~v~-~l~~sp~g~~l~~~s~d~~v~v 222 (616)
...+++|+....+ ..++.|..+|.|.-..+.........+..+... .+.+|. .|.++++..+|++++..+.++|
T Consensus 399 ~~~lT~vav~~~~~~tV~flGT~~G~l~KV~l~~~~~~~~~~e~~~v~~~~~pv~~~l~~~~~~~~Lyv~s~~~V~kv 476 (539)
T 3al9_A 399 RDRLTSVASYVYNGYSVVFVGTKSGKLKKIRADGPPHGGVQYEMVSVFKDGSPILRDMAFSINQLYLYVMSERQVTRV 476 (539)
T ss_dssp SSCEEEEEEEEETTEEEEEEEETTSEEEEEEEEETTTEEEEEEEEECCTTCCCCCSCCEECTTSSEEEEECSSEEEEE
T ss_pred ccceEEEEeeccCCeEEEEEEcCCCeEEEEEeCCCCccceeEEEEEeecCCCccccceEEccCCCeEEEEecccccee
Confidence 3457777776543 467788999987655554221110111222222 256785 8999999999998887765554
Done!