BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048015
(163 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1W9Y|A Chain A, The Structure Of Acc Oxidase
pdb|1WA6|X Chain X, The Structure Of Acc Oxidase
Length = 319
Score = 52.4 bits (124), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 39/70 (55%), Gaps = 8/70 (11%)
Query: 65 PNTPKGLSPRSDTSTITILTQEDDASGLQIKHNRGWVPVNP--------VTDALVILSNG 116
P+ KGL +D I +L Q+D SGLQ+ + W+ V P + D L +++NG
Sbjct: 168 PDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDGQWIDVPPXRHSIVVNLGDQLEVITNG 227
Query: 117 KFKSIEHRAV 126
K+KS+ HR +
Sbjct: 228 KYKSVXHRVI 237
>pdb|1GP4|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana
(Selenomethionine Substituted)
Length = 356
Score = 47.0 bits (110), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 14/80 (17%)
Query: 60 KLNFWPNTPK-----GLSPRSDTSTITILTQEDDASGLQIKHNRGWVPVNPVTDALV--- 111
K+N++P P+ G+ +D S +T + + GLQ+ + WV V D++V
Sbjct: 213 KINYYPKCPQPELALGVEAHTDVSALTFILH-NXVPGLQLFYEGKWVTAKCVPDSIVXHI 271
Query: 112 -----ILSNGKFKSIEHRAV 126
ILSNGK+KSI HR +
Sbjct: 272 GDTLEILSNGKYKSILHRGL 291
Score = 40.0 bits (92), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
Query: 3 TKKATTEFLEPPLEQKNKHA--VPSDDIQGYGHAYVVSEQQILDSSDALILFVCPAEYRK 60
KKA EF +E+K K+A + IQGYG + L+ D P E R
Sbjct: 95 VKKAGEEFFSLSVEEKEKYANDQATGKIQGYGSKLANNASGQLEWEDYFFHLAYPEEKRD 154
Query: 61 LNFWPNTP 68
L+ WP TP
Sbjct: 155 LSIWPKTP 162
>pdb|1GP5|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Trans-Dihydroquercetin
pdb|1GP6|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Trans-Dihydroquercetin (With 30 Min Exposure To O2)
Length = 356
Score = 46.6 bits (109), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 14/80 (17%)
Query: 60 KLNFWPNTPK-----GLSPRSDTSTITILTQEDDASGLQIKHNRGWVPVNPVTDALV--- 111
K+N++P P+ G+ +D S +T + + GLQ+ + WV V D++V
Sbjct: 213 KINYYPKCPQPELALGVEAHTDVSALTFILH-NMVPGLQLFYEGKWVTAKCVPDSIVMHI 271
Query: 112 -----ILSNGKFKSIEHRAV 126
ILSNGK+KSI HR +
Sbjct: 272 GDTLEILSNGKYKSILHRGL 291
Score = 40.0 bits (92), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
Query: 3 TKKATTEFLEPPLEQKNKHA--VPSDDIQGYGHAYVVSEQQILDSSDALILFVCPAEYRK 60
KKA EF +E+K K+A + IQGYG + L+ D P E R
Sbjct: 95 VKKAGEEFFSLSVEEKEKYANDQATGKIQGYGSKLANNASGQLEWEDYFFHLAYPEEKRD 154
Query: 61 LNFWPNTP 68
L+ WP TP
Sbjct: 155 LSIWPKTP 162
>pdb|2BRT|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Naringenin
Length = 355
Score = 46.6 bits (109), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 14/80 (17%)
Query: 60 KLNFWPNTPK-----GLSPRSDTSTITILTQEDDASGLQIKHNRGWVPVNPVTDALV--- 111
K+N++P P+ G+ +D S +T + + GLQ+ + WV V D++V
Sbjct: 212 KINYYPKCPQPELALGVEAHTDVSALTFILH-NMVPGLQLFYEGKWVTAKCVPDSIVMHI 270
Query: 112 -----ILSNGKFKSIEHRAV 126
ILSNGK+KSI HR +
Sbjct: 271 GDTLEILSNGKYKSILHRGL 290
Score = 40.0 bits (92), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
Query: 3 TKKATTEFLEPPLEQKNKHA--VPSDDIQGYGHAYVVSEQQILDSSDALILFVCPAEYRK 60
KKA EF +E+K K+A + IQGYG + L+ D P E R
Sbjct: 94 VKKAGEEFFSLSVEEKEKYANDQATGKIQGYGSKLANNASGQLEWEDYFFHLAYPEEKRD 153
Query: 61 LNFWPNTP 68
L+ WP TP
Sbjct: 154 LSIWPKTP 161
>pdb|3OOX|A Chain A, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase
Family Protein (Cc_0200) From Caulobacter Crescentus At
1.44 A Resolution
pdb|3OOX|B Chain B, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase
Family Protein (Cc_0200) From Caulobacter Crescentus At
1.44 A Resolution
Length = 312
Score = 33.9 bits (76), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 31/64 (48%), Gaps = 10/64 (15%)
Query: 75 SDTSTITILTQEDDASGLQIKHNRG-WVPVNPVTDALVI--------LSNGKFKSIEHRA 125
D +TIT+L ++ GL++ G W+P+NP LVI L+N S HR
Sbjct: 192 GDINTITLLLGAEEG-GLEVLDRDGQWLPINPPPGCLVINIGDXLERLTNNVLPSTVHRV 250
Query: 126 VKRP 129
V P
Sbjct: 251 VNPP 254
>pdb|3FLB|A Chain A, Rifr - Type Ii Thioesterase From Rifamycin NrpsPKS
Biosynthetic Pathway - Form 2
Length = 267
Score = 28.9 bits (63), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 45/110 (40%), Gaps = 15/110 (13%)
Query: 26 DDIQGYGHAYVVSEQQILDSSDA-------LILFVCPA---EYRKLNFWPNTPKGLSPRS 75
DD++G +V+E + L SDA L+ V PA +YR + + + P R
Sbjct: 132 DDVRGASDERLVAELRKLGGSDAAMLADPELLAMVLPAIRSDYRAVETYRHEPG----RR 187
Query: 76 DTSTITILTQEDDASGLQIKHNRGWVPVNPVTDALVILSNGKFKSIEHRA 125
+T+ T + D + + R W L +L G F ++ A
Sbjct: 188 VDCPVTVFTGDHDPR-VSVGEARAWEEHTTGPADLRVLPGGHFFLVDQAA 236
>pdb|3EOQ|A Chain A, The Crystal Structure Of Putative Zinc Protease Beta-
Subunit From Thermus Thermophilus Hb8
pdb|3EOQ|B Chain B, The Crystal Structure Of Putative Zinc Protease Beta-
Subunit From Thermus Thermophilus Hb8
Length = 406
Score = 26.9 bits (58), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 4/53 (7%)
Query: 57 EYRKLNFWPNTPKGLSPRSDTSTITILTQEDDASGLQIKHNRGWVPVNPVTDA 109
E+ + F+ P G S +IT LT+E A+ H R ++P N V A
Sbjct: 139 EWARARFFQGHPLGNSVLGTRESITALTREGXAA----YHRRRYLPKNXVLAA 187
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.130 0.379
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,743,100
Number of Sequences: 62578
Number of extensions: 183313
Number of successful extensions: 232
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 220
Number of HSP's gapped (non-prelim): 10
length of query: 163
length of database: 14,973,337
effective HSP length: 91
effective length of query: 72
effective length of database: 9,278,739
effective search space: 668069208
effective search space used: 668069208
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 47 (22.7 bits)