BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048016
(416 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2VZT|A Chain A, Complex Of Amycolatopsis Orientalis Exo-Chitosanase Csxa
E541a With Pnp-Beta-D-Glucosamine
pdb|2VZT|B Chain B, Complex Of Amycolatopsis Orientalis Exo-Chitosanase Csxa
E541a With Pnp-Beta-D-Glucosamine
pdb|2VZV|A Chain A, Substrate Complex Of Amycolatopsis Orientalis Exo-
Chitosanase Csxa E541a With Chitosan
pdb|2VZV|B Chain B, Substrate Complex Of Amycolatopsis Orientalis Exo-
Chitosanase Csxa E541a With Chitosan
Length = 1032
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 25/105 (23%), Positives = 38/105 (36%), Gaps = 10/105 (9%)
Query: 10 GLVCTAFILRIDAVELGRRHPTERISGSAGDVLEDDPVGRLKVFVYELPSKYNKKILQKD 69
GL T + +D E T G+ G K +P+
Sbjct: 699 GLTATTKLYNLDGTEKYSNTKTGLSVGALG----------AKATAVTVPAVSGLSTTYLA 748
Query: 70 QRCLTHMFAAEIFMHRFLLSSPVRTLNPEEADWFYTPVYTTCDLT 114
+ LT E+ + + LS+ TLN +DW+YTP DL+
Sbjct: 749 KNVLTDSSGKEVSRNVYWLSTKADTLNWGGSDWYYTPQSAFADLS 793
>pdb|2VZU|A Chain A, Complex Of Amycolatopsis Orientalis Exo-Chitosanase Csxa
D469a With Pnp-Beta-D-Glucosamine
pdb|2VZU|B Chain B, Complex Of Amycolatopsis Orientalis Exo-Chitosanase Csxa
D469a With Pnp-Beta-D-Glucosamine
Length = 1032
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 25/105 (23%), Positives = 38/105 (36%), Gaps = 10/105 (9%)
Query: 10 GLVCTAFILRIDAVELGRRHPTERISGSAGDVLEDDPVGRLKVFVYELPSKYNKKILQKD 69
GL T + +D E T G+ G K +P+
Sbjct: 699 GLTATTKLYNLDGTEKYSNTKTGLSVGALG----------AKATAVTVPAVSGLSTTYLA 748
Query: 70 QRCLTHMFAAEIFMHRFLLSSPVRTLNPEEADWFYTPVYTTCDLT 114
+ LT E+ + + LS+ TLN +DW+YTP DL+
Sbjct: 749 KNVLTDSSGKEVSRNVYWLSTKADTLNWGGSDWYYTPQSAFADLS 793
>pdb|2VZS|A Chain A, Chitosan Product Complex Of Amycolatopsis Orientalis Exo-
Chitosanase Csxa
pdb|2VZS|B Chain B, Chitosan Product Complex Of Amycolatopsis Orientalis Exo-
Chitosanase Csxa
pdb|2X05|A Chain A, Inhibition Of The Exo-Beta-D-Glucosaminidase Csxa By A
Glucosamine-Configured Castanospermine And An Amino-
Australine Analogue
pdb|2X05|B Chain B, Inhibition Of The Exo-Beta-D-Glucosaminidase Csxa By A
Glucosamine-Configured Castanospermine And An Amino-
Australine Analogue
pdb|2X09|A Chain A, Inhibition Of The Exo-Beta-D-Glucosaminidase Csxa By A
Glucosamine-Configured Castanospermine And An Amino-
Australine Analogue
pdb|2X09|B Chain B, Inhibition Of The Exo-Beta-D-Glucosaminidase Csxa By A
Glucosamine-Configured Castanospermine And An Amino-
Australine Analogue
Length = 1032
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 25/105 (23%), Positives = 38/105 (36%), Gaps = 10/105 (9%)
Query: 10 GLVCTAFILRIDAVELGRRHPTERISGSAGDVLEDDPVGRLKVFVYELPSKYNKKILQKD 69
GL T + +D E T G+ G K +P+
Sbjct: 699 GLTATTKLYNLDGTEKYSNTKTGLSVGALG----------AKATAVTVPAVSGLSTTYLA 748
Query: 70 QRCLTHMFAAEIFMHRFLLSSPVRTLNPEEADWFYTPVYTTCDLT 114
+ LT E+ + + LS+ TLN +DW+YTP DL+
Sbjct: 749 KNVLTDSSGKEVSRNVYWLSTKADTLNWGGSDWYYTPQSAFADLS 793
>pdb|2VZO|A Chain A, Crystal Structure Of Amycolatopsis Orientalis Exo-
Chitosanase Csxa
pdb|2VZO|B Chain B, Crystal Structure Of Amycolatopsis Orientalis Exo-
Chitosanase Csxa
Length = 1032
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 25/105 (23%), Positives = 38/105 (36%), Gaps = 10/105 (9%)
Query: 10 GLVCTAFILRIDAVELGRRHPTERISGSAGDVLEDDPVGRLKVFVYELPSKYNKKILQKD 69
GL T + +D E T G+ G K +P+
Sbjct: 699 GLTATTKLYNLDGTEKYSNTKTGLSVGALG----------AKATAVTVPAVSGLSTTYLA 748
Query: 70 QRCLTHMFAAEIFMHRFLLSSPVRTLNPEEADWFYTPVYTTCDLT 114
+ LT E+ + + LS+ TLN +DW+YTP DL+
Sbjct: 749 KNVLTDSSGKEVSRNVYWLSTKADTLNWGGSDWYYTPQSAFADLS 793
>pdb|3EH7|A Chain A, The Structure Of A Putative 4-Hydroxybutyrate
Coa-Transferase From Porphyromonas Gingivalis W83
Length = 434
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 23/42 (54%)
Query: 28 RHPTERISGSAGDVLEDDPVGRLKVFVYELPSKYNKKILQKD 69
RH T + G++ +E++ + VF YE+PS K IL D
Sbjct: 80 RHITNFVGGNSRKAVEENRADFIPVFFYEVPSXIRKDILHID 121
>pdb|3ICP|A Chain A, Crystal Structure Of Udp-Galactose 4-Epimerase
pdb|3KO8|A Chain A, Crystal Structure Of Udp-Galactose 4-Epimerase
Length = 312
Score = 29.6 bits (65), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 34/74 (45%), Gaps = 4/74 (5%)
Query: 255 NFKDNPLFDISTEHPTTYYEDMQRAVFCLCPLGWAPWSPRLVEAVIFGCIPVIIADDIVL 314
+F NP +ST P ++ + A F + L WA + V V+F + D V+
Sbjct: 68 HFAANPEVRLSTTEPIVHFNENVVATFNV--LEWARQTG--VRTVVFASSSTVYGDADVI 123
Query: 315 PFADAIPWEEIGVF 328
P + P++ I V+
Sbjct: 124 PTPEEEPYKPISVY 137
>pdb|3AW9|A Chain A, Structure Of Udp-Galactose 4-Epimerase Mutant
pdb|3AW9|B Chain B, Structure Of Udp-Galactose 4-Epimerase Mutant
pdb|3AW9|C Chain C, Structure Of Udp-Galactose 4-Epimerase Mutant
Length = 308
Score = 29.3 bits (64), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 34/74 (45%), Gaps = 4/74 (5%)
Query: 255 NFKDNPLFDISTEHPTTYYEDMQRAVFCLCPLGWAPWSPRLVEAVIFGCIPVIIADDIVL 314
+F NP +ST P ++ + A F + L WA + V V+F + D V+
Sbjct: 64 HFAANPEVRLSTTEPIVHFNENVVATFNV--LEWARQTG--VRTVVFASSSTVYGDADVI 119
Query: 315 PFADAIPWEEIGVF 328
P + P++ I V+
Sbjct: 120 PTPEEEPYKPISVY 133
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.141 0.461
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,144,286
Number of Sequences: 62578
Number of extensions: 545123
Number of successful extensions: 861
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 854
Number of HSP's gapped (non-prelim): 11
length of query: 416
length of database: 14,973,337
effective HSP length: 101
effective length of query: 315
effective length of database: 8,652,959
effective search space: 2725682085
effective search space used: 2725682085
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 53 (25.0 bits)