Query 048016
Match_columns 416
No_of_seqs 187 out of 835
Neff 6.9
Searched_HMMs 46136
Date Fri Mar 29 05:29:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048016.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048016hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03016 Exostosin: Exostosin 100.0 1.2E-58 2.6E-63 454.1 21.1 285 47-344 2-302 (302)
2 KOG1021 Acetylglucosaminyltran 100.0 1.3E-54 2.7E-59 451.2 24.4 326 45-392 110-459 (464)
3 KOG2264 Exostosin EXT1L [Signa 100.0 8.9E-31 1.9E-35 264.7 15.8 300 47-394 193-532 (907)
4 KOG1022 Acetylglucosaminyltran 99.7 5.7E-16 1.2E-20 157.4 14.8 267 49-356 98-382 (691)
5 cd03801 GT1_YqgM_like This fam 95.6 0.018 3.9E-07 55.2 5.3 86 269-357 266-353 (374)
6 cd03819 GT1_WavL_like This fam 95.3 0.056 1.2E-06 53.1 7.8 95 269-367 254-352 (355)
7 cd03820 GT1_amsD_like This fam 95.2 0.067 1.4E-06 51.1 7.7 86 270-357 244-331 (348)
8 cd03814 GT1_like_2 This family 95.0 0.054 1.2E-06 52.7 6.6 85 270-357 258-344 (364)
9 PF00534 Glycos_transf_1: Glyc 95.0 0.021 4.6E-07 50.6 3.4 85 269-356 83-169 (172)
10 cd03794 GT1_wbuB_like This fam 94.7 0.047 1E-06 53.1 5.1 85 270-357 286-377 (394)
11 PLN02871 UDP-sulfoquinovose:DA 94.4 0.27 5.8E-06 51.5 10.3 85 270-357 323-412 (465)
12 cd03822 GT1_ecORF704_like This 94.3 0.052 1.1E-06 53.0 4.5 84 270-357 259-346 (366)
13 cd03808 GT1_cap1E_like This fa 93.8 0.32 6.9E-06 46.6 8.8 85 269-356 254-340 (359)
14 cd04962 GT1_like_5 This family 93.6 0.12 2.7E-06 51.2 5.7 85 270-357 262-348 (371)
15 cd03800 GT1_Sucrose_synthase T 93.4 0.086 1.9E-06 52.6 4.2 94 270-367 294-389 (398)
16 TIGR03088 stp2 sugar transfera 93.3 0.15 3.2E-06 51.1 5.8 85 269-356 263-349 (374)
17 cd03807 GT1_WbnK_like This fam 93.3 0.11 2.3E-06 50.2 4.6 92 270-367 260-353 (365)
18 cd03818 GT1_ExpC_like This fam 93.2 0.15 3.2E-06 51.9 5.8 94 270-367 292-387 (396)
19 cd03823 GT1_ExpE7_like This fa 92.6 0.18 4E-06 48.7 5.2 85 270-357 254-341 (359)
20 PF00852 Glyco_transf_10: Glyc 92.6 0.16 3.4E-06 51.7 4.7 93 248-346 190-297 (349)
21 cd03809 GT1_mtfB_like This fam 92.2 0.19 4.2E-06 48.9 4.8 83 270-357 264-348 (365)
22 cd03798 GT1_wlbH_like This fam 92.2 0.084 1.8E-06 50.8 2.1 71 270-343 270-340 (377)
23 cd05844 GT1_like_7 Glycosyltra 92.1 0.3 6.5E-06 48.3 6.1 94 270-367 256-357 (367)
24 PRK15427 colanic acid biosynth 91.9 0.53 1.1E-05 48.6 7.8 94 270-367 290-392 (406)
25 cd03821 GT1_Bme6_like This fam 91.8 0.21 4.6E-06 48.3 4.5 83 270-357 273-357 (375)
26 cd03825 GT1_wcfI_like This fam 91.4 0.37 8.1E-06 47.2 5.8 84 271-357 257-342 (365)
27 TIGR02149 glgA_Coryne glycogen 91.2 0.29 6.2E-06 49.1 4.9 95 269-367 271-373 (388)
28 TIGR03449 mycothiol_MshA UDP-N 91.2 0.37 8.1E-06 48.8 5.7 93 270-367 294-388 (405)
29 cd04951 GT1_WbdM_like This fam 90.9 0.34 7.5E-06 47.4 5.1 81 270-355 254-337 (360)
30 PF13524 Glyco_trans_1_2: Glyc 90.6 0.28 6.1E-06 39.2 3.4 81 282-367 2-83 (92)
31 PRK09814 beta-1,6-galactofuran 89.5 0.45 9.6E-06 47.6 4.5 83 270-358 218-311 (333)
32 PRK15484 lipopolysaccharide 1, 89.4 1.1 2.4E-05 45.6 7.4 94 270-367 268-364 (380)
33 PF13692 Glyco_trans_1_4: Glyc 89.2 0.3 6.4E-06 41.3 2.6 68 270-342 62-130 (135)
34 PRK10307 putative glycosyl tra 88.5 0.71 1.5E-05 47.2 5.3 94 270-367 295-394 (412)
35 cd04955 GT1_like_6 This family 88.4 1.8 4E-05 42.3 8.0 82 270-357 259-342 (363)
36 cd03792 GT1_Trehalose_phosphor 88.4 3.8 8.3E-05 41.1 10.5 92 270-367 265-358 (372)
37 cd03802 GT1_AviGT4_like This f 88.4 1.2 2.5E-05 43.3 6.5 70 270-344 235-305 (335)
38 cd03805 GT1_ALG2_like This fam 87.9 0.67 1.5E-05 46.5 4.6 84 270-357 291-376 (392)
39 cd03813 GT1_like_3 This family 87.4 1.4 3E-05 46.3 6.8 86 269-357 361-454 (475)
40 TIGR03087 stp1 sugar transfera 87.2 2 4.4E-05 43.7 7.7 91 271-367 290-383 (397)
41 TIGR02472 sucr_P_syn_N sucrose 86.6 0.83 1.8E-05 47.5 4.5 93 271-367 329-427 (439)
42 TIGR02095 glgA glycogen/starch 86.3 1.6 3.5E-05 45.7 6.6 91 271-368 358-460 (473)
43 cd03804 GT1_wbaZ_like This fam 86.1 1.6 3.5E-05 43.2 6.1 70 270-343 253-322 (351)
44 PRK00654 glgA glycogen synthas 85.6 2.1 4.6E-05 44.8 7.0 90 272-368 350-450 (466)
45 cd03799 GT1_amsK_like This is 85.4 1.4 3E-05 43.0 5.2 85 270-357 247-339 (355)
46 PRK14099 glycogen synthase; Pr 85.1 2.3 5E-05 45.1 7.0 93 270-368 360-466 (485)
47 cd03806 GT1_ALG11_like This fa 84.7 1.5 3.3E-05 45.3 5.4 50 269-320 315-364 (419)
48 cd04949 GT1_gtfA_like This fam 84.7 2.2 4.8E-05 42.5 6.4 86 270-357 270-357 (372)
49 PRK14098 glycogen synthase; Pr 84.1 2.7 5.9E-05 44.6 7.0 91 271-368 374-473 (489)
50 PF00919 UPF0004: Uncharacteri 80.9 2.4 5.1E-05 35.1 4.0 40 71-114 8-48 (98)
51 cd03817 GT1_UGDG_like This fam 80.3 5 0.00011 38.7 6.9 84 270-357 270-355 (374)
52 cd03811 GT1_WabH_like This fam 80.0 11 0.00024 35.6 9.1 65 270-337 255-319 (353)
53 PHA01630 putative group 1 glyc 79.2 3.2 6.8E-05 41.8 5.1 40 270-310 201-240 (331)
54 cd03791 GT1_Glycogen_synthase_ 78.9 4.4 9.6E-05 42.2 6.3 84 271-357 363-457 (476)
55 cd04946 GT1_AmsK_like This fam 78.9 3.1 6.6E-05 42.8 5.1 85 271-358 301-390 (407)
56 PLN02949 transferase, transfer 77.9 2.4 5.1E-05 44.8 3.9 86 270-358 346-436 (463)
57 cd03795 GT1_like_4 This family 77.4 4.2 9E-05 39.6 5.3 93 270-366 255-352 (357)
58 PRK09922 UDP-D-galactose:(gluc 75.9 3.2 6.9E-05 41.6 4.1 72 271-344 250-321 (359)
59 PLN02939 transferase, transfer 75.6 6.5 0.00014 45.1 6.7 90 273-368 851-954 (977)
60 cd03796 GT1_PIG-A_like This fa 71.1 9.2 0.0002 38.8 6.2 67 270-341 261-327 (398)
61 PHA01633 putative glycosyl tra 71.0 4.1 8.9E-05 41.2 3.5 41 270-311 215-255 (335)
62 KOG2619 Fucosyltransferase [Ca 71.0 20 0.00043 36.8 8.4 101 247-351 210-323 (372)
63 cd03816 GT1_ALG1_like This fam 67.7 10 0.00022 39.1 5.7 84 269-357 305-396 (415)
64 cd03812 GT1_CapH_like This fam 66.7 20 0.00043 35.0 7.3 72 269-344 257-328 (358)
65 COG4698 Uncharacterized protei 65.4 5.9 0.00013 36.3 2.9 22 1-22 8-29 (197)
66 PRK15490 Vi polysaccharide bio 64.7 10 0.00023 41.1 5.1 65 270-337 464-528 (578)
67 TIGR02468 sucrsPsyn_pln sucros 64.6 18 0.00039 42.1 7.2 92 272-368 561-658 (1050)
68 PLN02316 synthase/transferase 63.4 9.9 0.00021 44.1 4.9 90 274-369 915-1022(1036)
69 PRK13731 conjugal transfer sur 61.7 26 0.00056 33.8 6.6 89 1-104 1-94 (243)
70 cd01635 Glycosyltransferase_GT 60.8 32 0.00069 30.5 7.0 41 270-311 173-213 (229)
71 cd03793 GT1_Glycogen_synthase_ 60.5 12 0.00027 40.6 4.8 60 270-330 466-528 (590)
72 PLN02605 monogalactosyldiacylg 58.5 31 0.00066 35.0 7.2 77 271-357 275-360 (382)
73 PRK05749 3-deoxy-D-manno-octul 57.4 13 0.00027 38.2 4.2 105 271-389 312-422 (425)
74 TIGR01133 murG undecaprenyldip 57.0 20 0.00042 35.3 5.3 82 271-357 243-333 (348)
75 PLN00142 sucrose synthase 54.2 18 0.0004 40.9 5.0 93 272-368 659-758 (815)
76 cd04950 GT1_like_1 Glycosyltra 51.8 16 0.00035 36.8 3.9 67 270-343 265-336 (373)
77 TIGR02918 accessory Sec system 50.1 65 0.0014 34.4 8.2 85 271-357 385-478 (500)
78 PRK00726 murG undecaprenyldiph 49.3 42 0.00091 33.3 6.3 83 270-357 244-336 (357)
79 PRK14862 rimO ribosomal protei 48.3 30 0.00065 36.2 5.3 53 45-114 3-56 (440)
80 PRK14329 (dimethylallyl)adenos 46.4 36 0.00077 36.0 5.5 59 39-114 13-72 (467)
81 PRK13608 diacylglycerol glucos 44.6 1.1E+02 0.0023 31.2 8.6 79 270-357 265-350 (391)
82 TIGR02470 sucr_synth sucrose s 43.5 36 0.00078 38.5 5.1 86 280-369 645-736 (784)
83 PRK14332 (dimethylallyl)adenos 42.5 45 0.00097 35.1 5.5 57 40-114 2-59 (449)
84 KOG1387 Glycosyltransferase [C 41.8 1.2E+02 0.0026 31.2 8.0 85 271-357 349-437 (465)
85 cd03788 GT1_TPS Trehalose-6-Ph 40.5 25 0.00055 36.9 3.3 84 269-357 351-440 (460)
86 TIGR02400 trehalose_OtsA alpha 37.6 65 0.0014 34.0 5.8 83 269-357 346-435 (456)
87 PRK14333 (dimethylallyl)adenos 33.4 58 0.0013 34.2 4.6 48 50-114 7-55 (448)
88 PRK14340 (dimethylallyl)adenos 32.5 72 0.0016 33.5 5.1 48 50-114 7-55 (445)
89 cd03785 GT1_MurG MurG is an N- 31.3 66 0.0014 31.5 4.5 82 270-357 244-336 (350)
90 PRK14338 (dimethylallyl)adenos 31.3 68 0.0015 33.8 4.7 48 50-114 21-69 (459)
91 COG2355 Zn-dependent dipeptida 30.0 26 0.00057 35.2 1.3 71 286-356 145-215 (313)
92 COG0438 RfaG Glycosyltransfera 29.9 49 0.0011 30.6 3.1 41 270-311 268-308 (381)
93 PRK10125 putative glycosyl tra 29.3 54 0.0012 33.8 3.5 66 271-340 299-364 (405)
94 COG0297 GlgA Glycogen synthase 28.6 60 0.0013 34.7 3.7 39 272-310 362-400 (487)
95 cd02133 PA_C5a_like PA_C5a_lik 28.6 1.2E+02 0.0026 26.4 5.1 42 271-312 40-81 (143)
96 PRK14326 (dimethylallyl)adenos 28.2 1.1E+02 0.0024 32.7 5.8 51 47-114 11-62 (502)
97 PRK14328 (dimethylallyl)adenos 28.2 80 0.0017 33.0 4.6 40 71-114 10-50 (439)
98 PRK14334 (dimethylallyl)adenos 27.3 88 0.0019 32.7 4.7 40 71-114 9-49 (440)
99 KOG3185 Translation initiation 26.4 51 0.0011 30.7 2.4 33 277-309 19-51 (245)
100 PRK14335 (dimethylallyl)adenos 26.0 65 0.0014 33.9 3.5 40 71-114 9-49 (455)
101 PRK14331 (dimethylallyl)adenos 24.9 1E+02 0.0023 32.1 4.7 40 71-114 9-49 (437)
102 TIGR03590 PseG pseudaminic aci 24.8 1E+02 0.0022 29.9 4.4 34 270-309 233-266 (279)
103 smart00672 CAP10 Putative lipo 24.4 5.7E+02 0.012 24.7 9.4 112 220-344 81-214 (256)
104 PRK15179 Vi polysaccharide bio 24.2 99 0.0021 34.6 4.6 62 270-334 583-644 (694)
105 PRK14336 (dimethylallyl)adenos 23.3 79 0.0017 32.9 3.4 41 71-114 10-50 (418)
106 PRK14325 (dimethylallyl)adenos 23.2 1.1E+02 0.0025 31.9 4.6 40 71-114 12-52 (444)
107 COG0621 MiaB 2-methylthioadeni 22.9 90 0.002 32.9 3.7 40 71-114 11-52 (437)
108 PF07038 DUF1324: Protein of u 21.7 56 0.0012 23.4 1.3 40 276-318 6-46 (59)
109 PF09911 DUF2140: Uncharacteri 21.5 76 0.0017 29.3 2.6 17 2-18 1-17 (187)
110 TIGR00089 RNA modification enz 20.6 1.3E+02 0.0029 31.2 4.5 35 71-106 8-43 (429)
111 TIGR01574 miaB-methiolase tRNA 20.4 1.3E+02 0.0029 31.4 4.4 40 71-114 8-49 (438)
112 KOG3397 Acetyltransferases [Ge 20.0 1.3E+02 0.0029 27.7 3.7 34 93-140 4-37 (225)
No 1
>PF03016 Exostosin: Exostosin family; InterPro: IPR004263 Hereditary multiple exostoses (EXT) is an autosomal dominant disorder that is characterised by the appearance of multiple outgrowths of the long bones (exostoses) at their epiphyses []. Mutations in two homologous genes, EXT1 and EXT2, are responsible for the EXT syndrome. The human and mouse EXT genes have at least two homologs in the invertebrate Caenorhabditis elegans, indicating that they do not function exclusively as regulators of bone growth. EXT1 and EXT2 have both been shown to encode glycosyltransferases involved in the chain elongation step of heparan sulphate biosynthesis [].; GO: 0016020 membrane
Probab=100.00 E-value=1.2e-58 Score=454.10 Aligned_cols=285 Identities=38% Similarity=0.722 Sum_probs=225.0
Q ss_pred CCceeEEEEcCCCCCChhhh-----ccccccccCcchHHHHHHHHHhcCCCcCCCcCCCcEEEEeccccccc-CCCCCCC
Q 048016 47 VGRLKVFVYELPSKYNKKIL-----QKDQRCLTHMFAAEIFMHRFLLSSPVRTLNPEEADWFYTPVYTTCDL-TPNGLPL 120 (416)
Q Consensus 47 ~~~~kIYVYdlP~~fn~~ll-----~~~~~~~~~~y~~E~~~~~~L~~S~~rT~dP~eAdlFyVP~~~~~~~-~~~~~~~ 120 (416)
++++||||||+|++||++++ ..++.|.+++|++|.+|+++|++|+++|.||+|||+||||++.+|.. ..++.+.
T Consensus 2 ~~~lkVYVY~lp~~~~~~~~~~~~~~~~~~~~~~~~~~e~~l~~~l~~s~~~T~dp~eAdlF~vP~~~~~~~~~~~~~~~ 81 (302)
T PF03016_consen 2 HRGLKVYVYPLPPKFNKDLLDPREDEQCSWYETSQYALEVILHEALLNSPFRTDDPEEADLFFVPFYSSCYFHHWWGSPN 81 (302)
T ss_pred CCCCEEEEEeCCccccccceeccccccCCCcccccchHHHHHHHHHHhCCcEeCCHHHCeEEEEEcccccccccccCCcc
Confidence 46899999999999998887 23466788999999999999999999999999999999999998873 1122222
Q ss_pred CCChhHHHHHHHHHHhhcCccccCCCCccEEEEecCCCCCccchhhHHHHhhCchhhhhcceeee-eecCCCcccc-CCC
Q 048016 121 PFKSPRMMRSAIQLISSNWPYWNRTEGADHFFVVPHDFGACFHYQEEKAIERGILPLLQRATLVQ-TFGQRNHVCL-KEG 198 (416)
Q Consensus 121 ~~~~~~~~~~~~~~L~~~~PyWnR~~GrDH~~v~~~D~G~~~~~~~~~a~~~g~~~~~~na~~l~-~~~~~~~~~~-~~~ 198 (416)
.........+.+..+.+++|||||++|+||||++++|+|.|...... .+..+++... ..+.....|+ +.+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~p~w~r~~G~dH~~~~~~~~g~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (302)
T PF03016_consen 82 SGADRDSLSDALRHLLASYPYWNRSGGRDHFFVNSHDRGGCSFDRNP--------RLMNNSIRAVVAFSSFSSSCFRPGF 153 (302)
T ss_pred chhhHHHHHHHHHHHHhcCchhhccCCCCeEEEeccccccccccccH--------hhhccchhheeccCCCCcCcccCCC
Confidence 22334555666777778999999999999999999999987653221 1222222222 2332233444 456
Q ss_pred ceecCCCCCCccccccc---CCCCCCCceeEeecccccccCCCCCCCCcccchHHHHHHHhcCCCceeee-----cCCcc
Q 048016 199 SITIPPYAPPQKMQAHL---IPEKTPRSIFVYFRGLFYDVGNDPEGGYYARGARAAVWENFKDNPLFDIS-----TEHPT 270 (416)
Q Consensus 199 DIviP~~~~p~~~~~~~---~~~~~~R~~L~~FaG~~~~~~~~~~~~~ys~~vR~~l~~~~~~~~~~~~~-----~~~~~ 270 (416)
||++|++.++.....+. ..+..+|++|++|+|.......+ ++.++|+.|++.|++.+++.+. +..+.
T Consensus 154 Di~~P~~~~~~~~~~~~~~~~~~~~~R~~l~~f~g~~~~~~~~-----~~~~~r~~l~~~~~~~~~~~~~~~~~~~~~~~ 228 (302)
T PF03016_consen 154 DIVIPPFVPPSSLPDWRPWPQRPPARRPYLLFFAGTIRPSSND-----YSGGVRQRLLDECKSDPDFRCSDGSETCPSPS 228 (302)
T ss_pred CeeccccccccccCCccccccCCccCCceEEEEeeeccccccc-----cchhhhhHHHHhcccCCcceeeecccccccch
Confidence 99999987665533222 23567899999999997654321 4568999999999988876543 23456
Q ss_pred cHHHhcccceeEEecCCCCCCchhHHHHHHhCceeEEeeccccCCCCCCCCCCceEEEEcCCChhcHHHHHhcC
Q 048016 271 TYYEDMQRAVFCLCPLGWAPWSPRLVEAVIFGCIPVIIADDIVLPFADAIPWEEIGVFIDEKDVPNLDAILTAI 344 (416)
Q Consensus 271 ~y~~~~~~S~FCl~p~G~~~~s~Rl~dal~~GCIPVii~d~~~lPf~~~idw~~fsv~v~~~~~~~l~~~L~~i 344 (416)
+|.+.|++|+|||+|+|+++++.||+|||.+|||||||+|++.|||+++|||++|||+|+++++++|+++|++|
T Consensus 229 ~~~~~l~~S~FCL~p~G~~~~s~Rl~eal~~GcIPVii~d~~~lPf~~~ldw~~fsv~v~~~~~~~l~~iL~~i 302 (302)
T PF03016_consen 229 EYMELLRNSKFCLCPRGDGPWSRRLYEALAAGCIPVIISDDYVLPFEDVLDWSRFSVRVPEADLPELPEILRSI 302 (302)
T ss_pred HHHHhcccCeEEEECCCCCcccchHHHHhhhceeeEEecCcccCCcccccCHHHEEEEECHHHHHHHHHHHhcC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999986
No 2
>KOG1021 consensus Acetylglucosaminyltransferase EXT1/exostosin 1 [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Extracellular structures]
Probab=100.00 E-value=1.3e-54 Score=451.18 Aligned_cols=326 Identities=36% Similarity=0.583 Sum_probs=257.0
Q ss_pred CCCCceeEEEEcCCCCCChhhhccccccccCcchHHHHHHHHH--hcCCCcCCCcCCCcEEEEecccccccCCC-CCCC-
Q 048016 45 DPVGRLKVFVYELPSKYNKKILQKDQRCLTHMFAAEIFMHRFL--LSSPVRTLNPEEADWFYTPVYTTCDLTPN-GLPL- 120 (416)
Q Consensus 45 ~~~~~~kIYVYdlP~~fn~~ll~~~~~~~~~~y~~E~~~~~~L--~~S~~rT~dP~eAdlFyVP~~~~~~~~~~-~~~~- 120 (416)
.+.+.+|||+|.++ +..+.+..++|.+++|++|.+||+++ ..++|||.||+|||+||||||.+++.++. +.+.
T Consensus 110 ~~~~~~~~~~~~~~---~~~~~~~~~w~~~~~~~~E~~~~~~~~~~~~~~Rt~dp~~Ad~f~vPf~~~~~~~~~~~~~~~ 186 (464)
T KOG1021|consen 110 LNEKRGKVYVYHEG---NKPLFHTPSWCLTDQYASEGIFHNRMLRRESAFRTLDPLEADAFYVPFYASLDYNRALLWPDE 186 (464)
T ss_pred hhcccCceEEecCC---CCccccCCCcccccchhHHHHHHHHHhcccCceecCChhhCcEEEEcceeeEehhhhcccCCc
Confidence 34567999999988 34445556789999999999999999 47899999999999999999999988553 3331
Q ss_pred --CCChhHHHHHHHHHHhhcCccccCCCCccEEEEecCCCCCccchhhHHHHhhCchhhhhc-ceeeeeecCCCccccCC
Q 048016 121 --PFKSPRMMRSAIQLISSNWPYWNRTEGADHFFVVPHDFGACFHYQEEKAIERGILPLLQR-ATLVQTFGQRNHVCLKE 197 (416)
Q Consensus 121 --~~~~~~~~~~~~~~L~~~~PyWnR~~GrDH~~v~~~D~G~~~~~~~~~a~~~g~~~~~~n-a~~l~~~~~~~~~~~~~ 197 (416)
.....+.+.+++..+.+++|||||++|+|||||++||++.+.......+.... ...+.| +.....+... .
T Consensus 187 ~~~~~~~~~~~~~i~~~~~~~p~W~Rs~G~DH~~v~~~~~~~~~~~~~~~~~~~~-i~~~~n~a~ls~~~~~~------~ 259 (464)
T KOG1021|consen 187 RVNAILRSILQDYIVALLSKQPYWNRSSGRDHFFVACHDWGDFRRRSDWGASISL-IPEFCNGALLSLEFFPW------N 259 (464)
T ss_pred ccchHHHHHHHHHHHHHHhcCchhhccCCCceEEEeCCcchheeeccchhhHHHH-HHhhCCcceeecccccC------C
Confidence 12345666666666668999999999999999999999987653211121111 223444 3334444432 1
Q ss_pred CceecCCCC--CCcccc--cccC-CCCCCCceeEeecccccccCCCCCCCCcccchHHHHHHHhcCCC----ceee----
Q 048016 198 GSITIPPYA--PPQKMQ--AHLI-PEKTPRSIFVYFRGLFYDVGNDPEGGYYARGARAAVWENFKDNP----LFDI---- 264 (416)
Q Consensus 198 ~DIviP~~~--~p~~~~--~~~~-~~~~~R~~L~~FaG~~~~~~~~~~~~~ys~~vR~~l~~~~~~~~----~~~~---- 264 (416)
+|++||.+. ++.... .+.. ....+|++|+||+|... .+.+|+.|+++|++.+ ...|
T Consensus 260 ~dv~iP~~~~~~~~~~~~~~~~~~~~~~~R~~L~~F~G~~~-----------~~~iR~~L~~~~~~~~~~~~~~~~~~g~ 328 (464)
T KOG1021|consen 260 KDVAIPYPTIPHPLSPPENSWQGGVPFSNRPILAFFAGAPA-----------GGQIRSILLDLWKKDPDTEVFVNCPRGK 328 (464)
T ss_pred CcccCCCccCcCccCccccccccCCCCCCCceEEEEecccc-----------CCcHHHHHHHHhhcCcCccccccCCCCc
Confidence 588898654 333322 1222 45579999999999841 1369999999998822 2222
Q ss_pred -ecCCcccHHHhcccceeEEecCCCCCCchhHHHHHHhCceeEEeeccccCCCCCCCCCCceEEEEcCCChhcH-HHHHh
Q 048016 265 -STEHPTTYYEDMQRAVFCLCPLGWAPWSPRLVEAVIFGCIPVIIADDIVLPFADAIPWEEIGVFIDEKDVPNL-DAILT 342 (416)
Q Consensus 265 -~~~~~~~y~~~~~~S~FCl~p~G~~~~s~Rl~dal~~GCIPVii~d~~~lPf~~~idw~~fsv~v~~~~~~~l-~~~L~ 342 (416)
+|.++..|.+.|++|+|||||+|+++++.|+||||.+|||||||+|++++||++++||++|||+|++++++++ .++|.
T Consensus 329 ~~~~~~~~y~~~m~~S~FCL~p~Gd~~ts~R~fdai~~gCvPViisd~~~lpf~~~~d~~~fSV~v~~~~v~~~~~~iL~ 408 (464)
T KOG1021|consen 329 VSCDRPLNYMEGMQDSKFCLCPPGDTPTSPRLFDAIVSGCVPVIISDGIQLPFGDVLDWTEFSVFVPEKDVPELIKNILL 408 (464)
T ss_pred cccCCcchHHHHhhcCeEEECCCCCCcccHhHHHHHHhCCccEEEcCCcccCcCCCccceEEEEEEEHHHhhhHHHHHHH
Confidence 2345789999999999999999999999999999999999999999999999999999999999999999998 99999
Q ss_pred cCChHHHHHHHHHhcccccccceeecC--CCCcchHHHHHHHHHHHHcCCcc
Q 048016 343 AIPTEVILRKQRLLANPSMKQAMLFPQ--PAQPGDAFHQVLNGLARKLPHDK 392 (416)
Q Consensus 343 ~i~~~~~~~mq~~l~~~~~~~~f~y~~--~~~~~DAf~~il~~L~~r~~~~~ 392 (416)
+++.+++.+||+++.+ .+.+||.+.. +...+|||+++++++++|+.+.+
T Consensus 409 ~i~~~~~~~m~~~v~~-~v~r~~~~~~~~~~~~~da~~~~~~~v~~r~~~~~ 459 (464)
T KOG1021|consen 409 SIPEEEVLRMRENVIR-LVPRHFLKKPPGPPKRGDAFHMILHSLWRRLHKLR 459 (464)
T ss_pred hcCHHHHHHHHHHHHH-HHHhhEEeCCCCCCCcchhHHHHHhhhhhcccccc
Confidence 9999999999999985 5889999998 77889999999999998887765
No 3
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=99.97 E-value=8.9e-31 Score=264.73 Aligned_cols=300 Identities=15% Similarity=0.218 Sum_probs=213.1
Q ss_pred CCceeEEEEcCCCCCChhhhccccccccCcchHHH----HHHHHHhcCCCcCCCcCCCcEEEEecccccccCCCCCCCCC
Q 048016 47 VGRLKVFVYELPSKYNKKILQKDQRCLTHMFAAEI----FMHRFLLSSPVRTLNPEEADWFYTPVYTTCDLTPNGLPLPF 122 (416)
Q Consensus 47 ~~~~kIYVYdlP~~fn~~ll~~~~~~~~~~y~~E~----~~~~~L~~S~~rT~dP~eAdlFyVP~~~~~~~~~~~~~~~~ 122 (416)
.++|.||||| |+.+..+ ++.+. .|.+.+.++.+.|+||+.||++.+-+..- . .|...
T Consensus 193 tSgfPVYvyd-~D~~~~G------------~~~d~~lk~~fq~t~~~n~~~ve~pd~ACiyi~lvge~---q---~P~~l 253 (907)
T KOG2264|consen 193 TSGFPVYVYD-SDIITSG------------QSEDEWLKQVFQETIPNNVYLVETPDKACIYIHLVGEI---Q---SPVVL 253 (907)
T ss_pred cCCceeEEec-cceeecc------------cchHHHHHHHHHHhcccceeEeeCCCccEEEEEEeccc---c---CCCcC
Confidence 3489999999 6655542 33333 44556667889999999999998866431 1 11111
Q ss_pred ChhHHHHHHHHHHhhcCccccCCCCccEEEEecCCCCCccchhhHHHHhhCchhhhhcceeeeeecCCCccccCCCceec
Q 048016 123 KSPRMMRSAIQLISSNWPYWNRTEGADHFFVVPHDFGACFHYQEEKAIERGILPLLQRATLVQTFGQRNHVCLKEGSITI 202 (416)
Q Consensus 123 ~~~~~~~~~~~~L~~~~PyWnR~~GrDH~~v~~~D~G~~~~~~~~~a~~~g~~~~~~na~~l~~~~~~~~~~~~~~DIvi 202 (416)
.. .++ +.|- ++|||+ ++|+||++++..-..-..+ ......+|.+.++++++....+++++ |.++
T Consensus 254 ~p----~el-ekly-slp~w~-~dg~Nhvl~Nl~r~s~~~n--~lyn~~t~raivvQssf~~~q~Rpgf-------Dl~V 317 (907)
T KOG2264|consen 254 TP----AEL-EKLY-SLPHWR-TDGFNHVLFNLGRPSDTQN--LLYNFQTGRAIVVQSSFYTVQIRPGF-------DLPV 317 (907)
T ss_pred Ch----Hhh-hhhh-cCcccc-CCCcceEEEEccCcccccc--ceeEeccCceEEEeecceeeeeccCC-------Cccc
Confidence 11 232 3353 789997 8999999998743211000 01123455566777777777777766 8999
Q ss_pred CCCCCCcccccccC---CCCCCCceeEeecccccccCCCCCCCCcccchHHHHHHHhcC--------CC--ceeee----
Q 048016 203 PPYAPPQKMQAHLI---PEKTPRSIFVYFRGLFYDVGNDPEGGYYARGARAAVWENFKD--------NP--LFDIS---- 265 (416)
Q Consensus 203 P~~~~p~~~~~~~~---~~~~~R~~L~~FaG~~~~~~~~~~~~~ys~~vR~~l~~~~~~--------~~--~~~~~---- 265 (416)
||..|+.....+.. ..+.+|++|+.|+|.+.+.... -+..+.-..++..+ ++ .+.|+
T Consensus 318 ~pv~h~~~e~~~~e~~p~vP~~RkyL~t~qgki~~~~ss------Ln~~~aF~~e~~adp~~~a~qds~i~qv~c~~t~k 391 (907)
T KOG2264|consen 318 DPVNHIAVEKNFVELTPLVPFQRKYLITLQGKIESDNSS------LNEFSAFSEELSADPSRRAVQDSPIVQVKCSFTCK 391 (907)
T ss_pred CcccccccCccceecCcccchhhheeEEEEeeecccccc------cchhhhhHHHhccCCcccccccCceEEEEEeeccc
Confidence 99988776554433 3457999999999987643211 01222222222111 11 12222
Q ss_pred ------------cCCcccHHHhcccceeEEe-cCCCCC-----CchhHHHHHHhCceeEEeeccccCCCCCCCCCCceEE
Q 048016 266 ------------TEHPTTYYEDMQRAVFCLC-PLGWAP-----WSPRLVEAVIFGCIPVIIADDIVLPFADAIPWEEIGV 327 (416)
Q Consensus 266 ------------~~~~~~y~~~~~~S~FCl~-p~G~~~-----~s~Rl~dal~~GCIPVii~d~~~lPf~~~idw~~fsv 327 (416)
|+..+.-.++++.|+|||+ |+|+.- .-.|++||++.||||||+++...|||+|.|||++.++
T Consensus 392 ~Qe~~SLpewalcg~~~~RrqLlk~STF~lilpp~d~rv~S~~~~~r~~eaL~~GavPviLg~~~~LPyqd~idWrraal 471 (907)
T KOG2264|consen 392 NQENCSLPEWALCGERERRRQLLKSSTFCLILPPGDPRVISEMFFQRFLEALQLGAVPVILGNSQLLPYQDLIDWRRAAL 471 (907)
T ss_pred cCCCCCcchhhhccchHHHHHHhccceeEEEecCCCcchhhHHHHHHHHHHHhcCCeeEEeccccccchHHHHHHHHHhh
Confidence 3334567889999999996 888752 3679999999999999999999999999999999999
Q ss_pred EEcCCChhcHHHHHhcCChHHHHHHHHHhcccccccceeecCCC-CcchHHHHHHHHHHHHcCCcchh
Q 048016 328 FIDEKDVPNLDAILTAIPTEVILRKQRLLANPSMKQAMLFPQPA-QPGDAFHQVLNGLARKLPHDKSV 394 (416)
Q Consensus 328 ~v~~~~~~~l~~~L~~i~~~~~~~mq~~l~~~~~~~~f~y~~~~-~~~DAf~~il~~L~~r~~~~~~~ 394 (416)
++|..++.+++.+|+++.+.++.+||++.. ++|.++- ...-.++++++.|+.|+.++.+-
T Consensus 472 ~lPkaR~tE~HFllrs~~dsDll~mRRqGR-------l~wEtYls~~~~~~~tvlA~lR~rlqIP~rp 532 (907)
T KOG2264|consen 472 RLPKARLTEAHFLLRSFEDSDLLEMRRQGR-------LFWETYLSDRHLLARTVLAALRYRLQIPTRP 532 (907)
T ss_pred hCCccccchHHHHHHhcchhhHHHHHhhhh-------hhHHHHhhHHHHHHHHHHHHHHHhhCCCCcc
Confidence 999999999999999999999999999884 8888874 45668899999999999988754
No 4
>KOG1022 consensus Acetylglucosaminyltransferase EXT2/exostosin 2 [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Extracellular structures]
Probab=99.67 E-value=5.7e-16 Score=157.40 Aligned_cols=267 Identities=21% Similarity=0.212 Sum_probs=166.4
Q ss_pred ceeEEEEcCCCCCChhhhccccccccCcchHH-HHHHHHHhcCCCcCCCcCCCcEEEEecccccccCCCCCCCCCChhHH
Q 048016 49 RLKVFVYELPSKYNKKILQKDQRCLTHMFAAE-IFMHRFLLSSPVRTLNPEEADWFYTPVYTTCDLTPNGLPLPFKSPRM 127 (416)
Q Consensus 49 ~~kIYVYdlP~~fn~~ll~~~~~~~~~~y~~E-~~~~~~L~~S~~rT~dP~eAdlFyVP~~~~~~~~~~~~~~~~~~~~~ 127 (416)
..|||+|.+.+ ++...+--....++.| ..+.++...|-++|.|+++||+| +|...- ++++-.. -++
T Consensus 98 ~~KvyIy~l~~-----~vd~~s~~~~~T~s~ey~~lleA~~~S~yyt~n~N~aclf-~Ps~d~--lnQn~l~-----~kl 164 (691)
T KOG1022|consen 98 ETKVYIYMLGD-----IVDAKSIDKGATWSPEYIALLEAWHLSFYYTFNYNGACLF-MPSSDE--LNQNPLS-----WKL 164 (691)
T ss_pred ccceeEEehhh-----hhhhhcccccccccHHHHHHHHHHHhccceecCCCceEEE-ecchhh--hccCcch-----HHH
Confidence 57999998742 2211111112345556 35567777899999999999999 698664 3433111 011
Q ss_pred HHHHHHHHhhcCccccCCCCccEEEEecCCCCCccchhhHHHHhhCchhhhhcceee-eeecCCCccccCCCceecCCCC
Q 048016 128 MRSAIQLISSNWPYWNRTEGADHFFVVPHDFGACFHYQEEKAIERGILPLLQRATLV-QTFGQRNHVCLKEGSITIPPYA 206 (416)
Q Consensus 128 ~~~~~~~L~~~~PyWnR~~GrDH~~v~~~D~G~~~~~~~~~a~~~g~~~~~~na~~l-~~~~~~~~~~~~~~DIviP~~~ 206 (416)
-. ..+ ++.-.|.| |.||..++--. |.-..+.. +..-|. -++... ..|+. +..++..||.||.+.
T Consensus 165 ~~---~al-a~l~~wdr--g~nH~~fnmLp-Gg~p~ynt--aldv~~----d~a~~~gggf~t--W~yr~g~dv~ipv~S 229 (691)
T KOG1022|consen 165 EK---VAL-AKLLVWDR--GVNHEGFNMLP-GGDPTYNT--ALDVGQ----DEAWYSGGGFGT--WKYRKGNDVYIPVRS 229 (691)
T ss_pred HH---HHH-hcccchhc--ccceeeEeecc-CCCCCccc--cccCCc----ceeEEecCCcCc--ccccCCCcccccccc
Confidence 11 223 46669998 99999886321 22111111 011110 112111 11221 122334499999876
Q ss_pred CCcccccccCCCCCCCceeEeecccccccCCCCCCCCcccchHHHHHHHhcCCC--ceee------------ecCC--cc
Q 048016 207 PPQKMQAHLIPEKTPRSIFVYFRGLFYDVGNDPEGGYYARGARAAVWENFKDNP--LFDI------------STEH--PT 270 (416)
Q Consensus 207 ~p~~~~~~~~~~~~~R~~L~~FaG~~~~~~~~~~~~~ys~~vR~~l~~~~~~~~--~~~~------------~~~~--~~ 270 (416)
+. ...... ....+|..++-=.|. .|...+|..+.+...... .+.+ .+.+ .-
T Consensus 230 p~-~v~~~~-~~~g~r~~~l~~~q~-----------n~~pr~r~~l~el~~kh~e~~l~l~~c~nlsl~~r~~~qhH~~~ 296 (691)
T KOG1022|consen 230 PG-NVGRAF-LYDGSRYRVLQDCQE-----------NYGPRIRVSLIELLSKHEERELELPFCLNLSLNSRGVRQHHFDV 296 (691)
T ss_pred cc-ccCccc-cCCccceeeeecccc-----------ccchHhHHhHHHHHhhccceEEecchhccccccccchhhccccc
Confidence 43 211111 122345443322221 133456666665432211 1110 0112 24
Q ss_pred cHHHhcccceeEEecCCCCCCchhHHHHHHhCceeEEeeccccCCCCCCCCCCceEEEEcCCChhcHHHHHhcCChHHHH
Q 048016 271 TYYEDMQRAVFCLCPLGWAPWSPRLVEAVIFGCIPVIIADDIVLPFADAIPWEEIGVFIDEKDVPNLDAILTAIPTEVIL 350 (416)
Q Consensus 271 ~y~~~~~~S~FCl~p~G~~~~s~Rl~dal~~GCIPVii~d~~~lPf~~~idw~~fsv~v~~~~~~~l~~~L~~i~~~~~~ 350 (416)
+|...+...+||+.-+|.+....-+.+.+.+||+|||..|.+.+||++++||...||.++|..+..+...|++++...+-
T Consensus 297 ~yp~~l~~~~fc~~~R~~r~gq~~lv~~~~a~c~pvi~vd~y~lpf~~Vvdw~~aSv~~~e~~~~~v~~~l~~i~~~~i~ 376 (691)
T KOG1022|consen 297 KYPSSLEFIGFCDGDRVTRGGQFHLVILGYASCAPVISVDIYLLPFLGVVDWIVASVWCMEYYAGKVMDALLNIETAGIC 376 (691)
T ss_pred ccccccceeeeEeccccccCCccceehhhhcccceeeeeehhhhhhhhhhhceeeeEEeehhhHHHHHHHhhcchhcchh
Confidence 78999999999999998888889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHh
Q 048016 351 RKQRLL 356 (416)
Q Consensus 351 ~mq~~l 356 (416)
+||.+.
T Consensus 377 sl~~r~ 382 (691)
T KOG1022|consen 377 SLQLRR 382 (691)
T ss_pred hhhhhh
Confidence 988653
No 5
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=95.63 E-value=0.018 Score=55.23 Aligned_cols=86 Identities=17% Similarity=0.164 Sum_probs=63.9
Q ss_pred cccHHHhcccceeEEecCCCCCCchhHHHHHHhCceeEEeeccccCCCCCCCCCCceEEEEcCCChhcHHHHHhcC--Ch
Q 048016 269 PTTYYEDMQRAVFCLCPLGWAPWSPRLVEAVIFGCIPVIIADDIVLPFADAIPWEEIGVFIDEKDVPNLDAILTAI--PT 346 (416)
Q Consensus 269 ~~~y~~~~~~S~FCl~p~G~~~~s~Rl~dal~~GCIPVii~d~~~lPf~~~idw~~fsv~v~~~~~~~l~~~L~~i--~~ 346 (416)
..++.+.|..|.+.++|.-.++.+..++||+.+|| |||.++. -.+.+.+.-....+.++..+..++.+.|..+ .+
T Consensus 266 ~~~~~~~~~~~di~i~~~~~~~~~~~~~Ea~~~g~-pvI~~~~--~~~~~~~~~~~~g~~~~~~~~~~l~~~i~~~~~~~ 342 (374)
T cd03801 266 DEDLPALYAAADVFVLPSLYEGFGLVLLEAMAAGL-PVVASDV--GGIPEVVEDGETGLLVPPGDPEALAEAILRLLDDP 342 (374)
T ss_pred hhhHHHHHHhcCEEEecchhccccchHHHHHHcCC-cEEEeCC--CChhHHhcCCcceEEeCCCCHHHHHHHHHHHHcCh
Confidence 36788899999999999877778889999999997 6777664 3445555556777888888777777776653 34
Q ss_pred HHHHHHHHHhc
Q 048016 347 EVILRKQRLLA 357 (416)
Q Consensus 347 ~~~~~mq~~l~ 357 (416)
+...+|.++..
T Consensus 343 ~~~~~~~~~~~ 353 (374)
T cd03801 343 ELRRRLGEAAR 353 (374)
T ss_pred HHHHHHHHHHH
Confidence 55666766543
No 6
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=95.32 E-value=0.056 Score=53.11 Aligned_cols=95 Identities=16% Similarity=0.118 Sum_probs=66.9
Q ss_pred cccHHHhcccceeEEecC-CCCCCchhHHHHHHhCceeEEeeccccCCCCCCCCCCceEEEEcCCChhcHHHHHh-c--C
Q 048016 269 PTTYYEDMQRAVFCLCPL-GWAPWSPRLVEAVIFGCIPVIIADDIVLPFADAIPWEEIGVFIDEKDVPNLDAILT-A--I 344 (416)
Q Consensus 269 ~~~y~~~~~~S~FCl~p~-G~~~~s~Rl~dal~~GCIPVii~d~~~lPf~~~idw~~fsv~v~~~~~~~l~~~L~-~--i 344 (416)
..+..+.|+.|..++.|. -..+.+.-++|||.+|| |||.++. -+..+.+.-..-.+.++..+...+.+.|. . .
T Consensus 254 ~~~~~~~l~~ad~~i~ps~~~e~~~~~l~EA~a~G~-PvI~~~~--~~~~e~i~~~~~g~~~~~~~~~~l~~~i~~~~~~ 330 (355)
T cd03819 254 CSDMPAAYALADIVVSASTEPEAFGRTAVEAQAMGR-PVIASDH--GGARETVRPGETGLLVPPGDAEALAQALDQILSL 330 (355)
T ss_pred cccHHHHHHhCCEEEecCCCCCCCchHHHHHHhcCC-CEEEcCC--CCcHHHHhCCCceEEeCCCCHHHHHHHHHHHHhh
Confidence 456788999999999987 45667788999999999 7777763 34455555455677788888887777763 2 3
Q ss_pred ChHHHHHHHHHhcccccccceee
Q 048016 345 PTEVILRKQRLLANPSMKQAMLF 367 (416)
Q Consensus 345 ~~~~~~~mq~~l~~~~~~~~f~y 367 (416)
++++..+|.++..+ .+..+|.|
T Consensus 331 ~~~~~~~~~~~a~~-~~~~~f~~ 352 (355)
T cd03819 331 LPEGRAKMFAKARM-CVETLFSY 352 (355)
T ss_pred CHHHHHHHHHHHHH-HHHHhhhh
Confidence 56777777776543 23444443
No 7
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=95.20 E-value=0.067 Score=51.14 Aligned_cols=86 Identities=20% Similarity=0.167 Sum_probs=60.2
Q ss_pred ccHHHhcccceeEEecCCCCCCchhHHHHHHhCceeEEeeccccCCCCCCCCCCceEEEEcCCChhcHHHHHhcC--ChH
Q 048016 270 TTYYEDMQRAVFCLCPLGWAPWSPRLVEAVIFGCIPVIIADDIVLPFADAIPWEEIGVFIDEKDVPNLDAILTAI--PTE 347 (416)
Q Consensus 270 ~~y~~~~~~S~FCl~p~G~~~~s~Rl~dal~~GCIPVii~d~~~lPf~~~idw~~fsv~v~~~~~~~l~~~L~~i--~~~ 347 (416)
.+..+.|+++.+++.|...++.+..++|||.+||-+| .++....+ +++++-....+.++..++.++.+.+..+ .++
T Consensus 244 ~~~~~~~~~ad~~i~ps~~e~~~~~~~Ea~a~G~Pvi-~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~i~~ll~~~~ 321 (348)
T cd03820 244 KNIEEYYAKASIFVLTSRFEGFPMVLLEAMAFGLPVI-SFDCPTGP-SEIIEDGVNGLLVPNGDVEALAEALLRLMEDEE 321 (348)
T ss_pred chHHHHHHhCCEEEeCccccccCHHHHHHHHcCCCEE-EecCCCch-HhhhccCcceEEeCCCCHHHHHHHHHHHHcCHH
Confidence 5678899999999999887788899999999998654 55432212 2233333467778888877777666655 456
Q ss_pred HHHHHHHHhc
Q 048016 348 VILRKQRLLA 357 (416)
Q Consensus 348 ~~~~mq~~l~ 357 (416)
...+|.++..
T Consensus 322 ~~~~~~~~~~ 331 (348)
T cd03820 322 LRKRMGANAR 331 (348)
T ss_pred HHHHHHHHHH
Confidence 6667776653
No 8
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=95.04 E-value=0.054 Score=52.72 Aligned_cols=85 Identities=21% Similarity=0.209 Sum_probs=60.8
Q ss_pred ccHHHhcccceeEEecCCCCCCchhHHHHHHhCceeEEeeccccCCCCCCCCCCceEEEEcCCChhcHHHHHhcC--ChH
Q 048016 270 TTYYEDMQRAVFCLCPLGWAPWSPRLVEAVIFGCIPVIIADDIVLPFADAIPWEEIGVFIDEKDVPNLDAILTAI--PTE 347 (416)
Q Consensus 270 ~~y~~~~~~S~FCl~p~G~~~~s~Rl~dal~~GCIPVii~d~~~lPf~~~idw~~fsv~v~~~~~~~l~~~L~~i--~~~ 347 (416)
.+..+.|+.|..++.|.+..+.+..++|||.+|| |||.++.- ...+.+.=....+.++..+..++.+.+..+ .++
T Consensus 258 ~~~~~~~~~~d~~l~~s~~e~~~~~~lEa~a~g~-PvI~~~~~--~~~~~i~~~~~g~~~~~~~~~~l~~~i~~l~~~~~ 334 (364)
T cd03814 258 EELAAAYASADVFVFPSRTETFGLVVLEAMASGL-PVVAPDAG--GPADIVTDGENGLLVEPGDAEAFAAALAALLADPE 334 (364)
T ss_pred HHHHHHHHhCCEEEECcccccCCcHHHHHHHcCC-CEEEcCCC--CchhhhcCCcceEEcCCCCHHHHHHHHHHHHcCHH
Confidence 4567889999999999988888899999999999 78877642 223333323566777777776555555443 456
Q ss_pred HHHHHHHHhc
Q 048016 348 VILRKQRLLA 357 (416)
Q Consensus 348 ~~~~mq~~l~ 357 (416)
...+|+++..
T Consensus 335 ~~~~~~~~~~ 344 (364)
T cd03814 335 LRRRMAARAR 344 (364)
T ss_pred HHHHHHHHHH
Confidence 6777777654
No 9
>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins containign this domain transfer UDP, ADP, GDP or CMP linked sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. The bacterial enzymes are involved in various biosynthetic processes that include exopolysaccharide biosynthesis, lipopolysaccharide core biosynthesis and the biosynthesis of the slime polysaccaride colanic acid. Mutations in this domain of the human N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein are the cause of paroxysmal nocturnal hemoglobinuria (PNH), an acquired hemolytic blood disorder characterised by venous thrombosis, erythrocyte hemolysis, infections and defective hematopoiesis.; GO: 0009058 biosynthetic process; PDB: 2L7C_A 2IV3_B 2IUY_B 2XA9_A 2XA1_B 2X6R_A 2XMP_B 2XA2_B 2X6Q_A 3QHP_B ....
Probab=95.02 E-value=0.021 Score=50.60 Aligned_cols=85 Identities=20% Similarity=0.227 Sum_probs=55.1
Q ss_pred cccHHHhcccceeEEecCCCCCCchhHHHHHHhCceeEEeeccccCCCCCCCCCCceEEEEcCCChhcHHHHHhcCCh--
Q 048016 269 PTTYYEDMQRAVFCLCPLGWAPWSPRLVEAVIFGCIPVIIADDIVLPFADAIPWEEIGVFIDEKDVPNLDAILTAIPT-- 346 (416)
Q Consensus 269 ~~~y~~~~~~S~FCl~p~G~~~~s~Rl~dal~~GCIPVii~d~~~lPf~~~idw~~fsv~v~~~~~~~l~~~L~~i~~-- 346 (416)
..++.+.++.|.+.++|....+.+..+.|||.+|| |||+++. -.+.+++.=..-.+.++..++.++.+.+..+-.
T Consensus 83 ~~~l~~~~~~~di~v~~s~~e~~~~~~~Ea~~~g~-pvI~~~~--~~~~e~~~~~~~g~~~~~~~~~~l~~~i~~~l~~~ 159 (172)
T PF00534_consen 83 DDELDELYKSSDIFVSPSRNEGFGLSLLEAMACGC-PVIASDI--GGNNEIINDGVNGFLFDPNDIEELADAIEKLLNDP 159 (172)
T ss_dssp HHHHHHHHHHTSEEEE-BSSBSS-HHHHHHHHTT--EEEEESS--THHHHHSGTTTSEEEESTTSHHHHHHHHHHHHHHH
T ss_pred ccccccccccceecccccccccccccccccccccc-ceeeccc--cCCceeeccccceEEeCCCCHHHHHHHHHHHHCCH
Confidence 35678899999999999998999999999999999 6666662 112222211123467777788877777765543
Q ss_pred HHHHHHHHHh
Q 048016 347 EVILRKQRLL 356 (416)
Q Consensus 347 ~~~~~mq~~l 356 (416)
+....|.++.
T Consensus 160 ~~~~~l~~~~ 169 (172)
T PF00534_consen 160 ELRQKLGKNA 169 (172)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 3355555543
No 10
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=94.66 E-value=0.047 Score=53.09 Aligned_cols=85 Identities=20% Similarity=0.143 Sum_probs=58.7
Q ss_pred ccHHHhcccceeEEecCCCCCC-----chhHHHHHHhCceeEEeeccccCCCCCCCCCCceEEEEcCCChhcHHHHHhcC
Q 048016 270 TTYYEDMQRAVFCLCPLGWAPW-----SPRLVEAVIFGCIPVIIADDIVLPFADAIPWEEIGVFIDEKDVPNLDAILTAI 344 (416)
Q Consensus 270 ~~y~~~~~~S~FCl~p~G~~~~-----s~Rl~dal~~GCIPVii~d~~~lPf~~~idw~~fsv~v~~~~~~~l~~~L~~i 344 (416)
.++.+.|+.+.++++|...+.. ...++||+.+|| |||.++.-..+ +.+.=....+.++..+..++.+.|..+
T Consensus 286 ~~~~~~~~~~di~i~~~~~~~~~~~~~p~~~~Ea~~~G~-pvi~~~~~~~~--~~~~~~~~g~~~~~~~~~~l~~~i~~~ 362 (394)
T cd03794 286 EELPELLAAADVGLVPLKPGPAFEGVSPSKLFEYMAAGK-PVLASVDGESA--ELVEEAGAGLVVPPGDPEALAAAILEL 362 (394)
T ss_pred HHHHHHHHhhCeeEEeccCcccccccCchHHHHHHHCCC-cEEEecCCCch--hhhccCCcceEeCCCCHHHHHHHHHHH
Confidence 4677899999999999776543 556899999997 88887643221 222112556777777877777776655
Q ss_pred --ChHHHHHHHHHhc
Q 048016 345 --PTEVILRKQRLLA 357 (416)
Q Consensus 345 --~~~~~~~mq~~l~ 357 (416)
++++..+|.++..
T Consensus 363 ~~~~~~~~~~~~~~~ 377 (394)
T cd03794 363 LDDPEERAEMGENGR 377 (394)
T ss_pred HhChHHHHHHHHHHH
Confidence 5667777776654
No 11
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=94.38 E-value=0.27 Score=51.49 Aligned_cols=85 Identities=19% Similarity=0.178 Sum_probs=63.1
Q ss_pred ccHHHhcccceeEEecCCCCCCchhHHHHHHhCceeEEeeccccCCCCCCCCC---CceEEEEcCCChhcHHHHHhcC--
Q 048016 270 TTYYEDMQRAVFCLCPLGWAPWSPRLVEAVIFGCIPVIIADDIVLPFADAIPW---EEIGVFIDEKDVPNLDAILTAI-- 344 (416)
Q Consensus 270 ~~y~~~~~~S~FCl~p~G~~~~s~Rl~dal~~GCIPVii~d~~~lPf~~~idw---~~fsv~v~~~~~~~l~~~L~~i-- 344 (416)
.+..+.|+.+..++.|...++.+.-++|||.+| +|||.++.- ...++++= ..-.+.++..|..++.+.|..+
T Consensus 323 ~ev~~~~~~aDv~V~pS~~E~~g~~vlEAmA~G-~PVI~s~~g--g~~eiv~~~~~~~~G~lv~~~d~~~la~~i~~ll~ 399 (465)
T PLN02871 323 DELSQAYASGDVFVMPSESETLGFVVLEAMASG-VPVVAARAG--GIPDIIPPDQEGKTGFLYTPGDVDDCVEKLETLLA 399 (465)
T ss_pred HHHHHHHHHCCEEEECCcccccCcHHHHHHHcC-CCEEEcCCC--CcHhhhhcCCCCCceEEeCCCCHHHHHHHHHHHHh
Confidence 567889999999999998888888999999999 899988742 22333332 5667788888887776666543
Q ss_pred ChHHHHHHHHHhc
Q 048016 345 PTEVILRKQRLLA 357 (416)
Q Consensus 345 ~~~~~~~mq~~l~ 357 (416)
+++...+|.++..
T Consensus 400 ~~~~~~~~~~~a~ 412 (465)
T PLN02871 400 DPELRERMGAAAR 412 (465)
T ss_pred CHHHHHHHHHHHH
Confidence 4566677776655
No 12
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=94.29 E-value=0.052 Score=52.97 Aligned_cols=84 Identities=19% Similarity=0.140 Sum_probs=60.5
Q ss_pred ccHHHhcccceeEEecCCCC--CCchhHHHHHHhCceeEEeeccccCCCCCCCCCCceEEEEcCCChhcHHHHHhcC--C
Q 048016 270 TTYYEDMQRAVFCLCPLGWA--PWSPRLVEAVIFGCIPVIIADDIVLPFADAIPWEEIGVFIDEKDVPNLDAILTAI--P 345 (416)
Q Consensus 270 ~~y~~~~~~S~FCl~p~G~~--~~s~Rl~dal~~GCIPVii~d~~~lPf~~~idw~~fsv~v~~~~~~~l~~~L~~i--~ 345 (416)
.+..+.|+.+.+++.|.... +.+..+.|||.+|+ |||.+|.-- .+.+.+ ..-.+.++..+..++.+.|..+ .
T Consensus 259 ~~~~~~~~~ad~~v~ps~~e~~~~~~~~~Ea~a~G~-PvI~~~~~~--~~~i~~-~~~g~~~~~~d~~~~~~~l~~l~~~ 334 (366)
T cd03822 259 EELPELFSAADVVVLPYRSADQTQSGVLAYAIGFGK-PVISTPVGH--AEEVLD-GGTGLLVPPGDPAALAEAIRRLLAD 334 (366)
T ss_pred HHHHHHHhhcCEEEecccccccccchHHHHHHHcCC-CEEecCCCC--hheeee-CCCcEEEcCCCHHHHHHHHHHHHcC
Confidence 46788999999999998888 88889999999999 999887422 233333 3345667777777666666543 2
Q ss_pred hHHHHHHHHHhc
Q 048016 346 TEVILRKQRLLA 357 (416)
Q Consensus 346 ~~~~~~mq~~l~ 357 (416)
++...+|+++..
T Consensus 335 ~~~~~~~~~~~~ 346 (366)
T cd03822 335 PELAQALRARAR 346 (366)
T ss_pred hHHHHHHHHHHH
Confidence 356777777665
No 13
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=93.77 E-value=0.32 Score=46.63 Aligned_cols=85 Identities=20% Similarity=0.148 Sum_probs=58.4
Q ss_pred cccHHHhcccceeEEecCCCCCCchhHHHHHHhCceeEEeeccccCCCCCCCCCCceEEEEcCCChhcHHHHHhcC--Ch
Q 048016 269 PTTYYEDMQRAVFCLCPLGWAPWSPRLVEAVIFGCIPVIIADDIVLPFADAIPWEEIGVFIDEKDVPNLDAILTAI--PT 346 (416)
Q Consensus 269 ~~~y~~~~~~S~FCl~p~G~~~~s~Rl~dal~~GCIPVii~d~~~lPf~~~idw~~fsv~v~~~~~~~l~~~L~~i--~~ 346 (416)
..+..+.++.|.+++.|....+.+..++|||.+|| |||.++.-. ..+.+.=....+.++..+..++.+.+..+ .+
T Consensus 254 ~~~~~~~~~~adi~i~ps~~e~~~~~~~Ea~~~G~-Pvi~s~~~~--~~~~i~~~~~g~~~~~~~~~~~~~~i~~l~~~~ 330 (359)
T cd03808 254 RDDVPELLAAADVFVLPSYREGLPRVLLEAMAMGR-PVIATDVPG--CREAVIDGVNGFLVPPGDAEALADAIERLIEDP 330 (359)
T ss_pred cccHHHHHHhccEEEecCcccCcchHHHHHHHcCC-CEEEecCCC--chhhhhcCcceEEECCCCHHHHHHHHHHHHhCH
Confidence 34577889999999999887788899999999996 777776422 22333213456677777777766666543 34
Q ss_pred HHHHHHHHHh
Q 048016 347 EVILRKQRLL 356 (416)
Q Consensus 347 ~~~~~mq~~l 356 (416)
+...+|.++.
T Consensus 331 ~~~~~~~~~~ 340 (359)
T cd03808 331 ELRARMGQAA 340 (359)
T ss_pred HHHHHHHHHH
Confidence 5566665544
No 14
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=93.61 E-value=0.12 Score=51.16 Aligned_cols=85 Identities=19% Similarity=0.240 Sum_probs=61.3
Q ss_pred ccHHHhcccceeEEecCCCCCCchhHHHHHHhCceeEEeeccccCCCCCCCCCCceEEEEcCCChhcHHHHHhcC--ChH
Q 048016 270 TTYYEDMQRAVFCLCPLGWAPWSPRLVEAVIFGCIPVIIADDIVLPFADAIPWEEIGVFIDEKDVPNLDAILTAI--PTE 347 (416)
Q Consensus 270 ~~y~~~~~~S~FCl~p~G~~~~s~Rl~dal~~GCIPVii~d~~~lPf~~~idw~~fsv~v~~~~~~~l~~~L~~i--~~~ 347 (416)
.+..+.|+.|..++.|.-..+.+..+.|||.+| +|||.++.- ...+++.-..-...++..+..++.+.+..+ .++
T Consensus 262 ~~~~~~~~~~d~~v~ps~~E~~~~~~~EAma~g-~PvI~s~~~--~~~e~i~~~~~G~~~~~~~~~~l~~~i~~l~~~~~ 338 (371)
T cd04962 262 DHVEELLSIADLFLLPSEKESFGLAALEAMACG-VPVVASNAG--GIPEVVKHGETGFLVDVGDVEAMAEYALSLLEDDE 338 (371)
T ss_pred ccHHHHHHhcCEEEeCCCcCCCccHHHHHHHcC-CCEEEeCCC--CchhhhcCCCceEEcCCCCHHHHHHHHHHHHhCHH
Confidence 457788999999999986677788899999999 788888753 234444434445667777777666655443 466
Q ss_pred HHHHHHHHhc
Q 048016 348 VILRKQRLLA 357 (416)
Q Consensus 348 ~~~~mq~~l~ 357 (416)
...+|+++..
T Consensus 339 ~~~~~~~~~~ 348 (371)
T cd04962 339 LWQEFSRAAR 348 (371)
T ss_pred HHHHHHHHHH
Confidence 7778887665
No 15
>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light.
Probab=93.37 E-value=0.086 Score=52.63 Aligned_cols=94 Identities=18% Similarity=0.197 Sum_probs=63.4
Q ss_pred ccHHHhcccceeEEecCCCCCCchhHHHHHHhCceeEEeeccccCCCCCCCCCCceEEEEcCCChhcHHHHHhcC--ChH
Q 048016 270 TTYYEDMQRAVFCLCPLGWAPWSPRLVEAVIFGCIPVIIADDIVLPFADAIPWEEIGVFIDEKDVPNLDAILTAI--PTE 347 (416)
Q Consensus 270 ~~y~~~~~~S~FCl~p~G~~~~s~Rl~dal~~GCIPVii~d~~~lPf~~~idw~~fsv~v~~~~~~~l~~~L~~i--~~~ 347 (416)
.+..+.++.|..+++|.-..+.+..++|||.+| +|||.++.- ...+.+.=....+.++..+..++.+.+..+ +++
T Consensus 294 ~~~~~~~~~adi~l~ps~~e~~~~~l~Ea~a~G-~Pvi~s~~~--~~~e~i~~~~~g~~~~~~~~~~l~~~i~~l~~~~~ 370 (398)
T cd03800 294 EDLPALYRAADVFVNPALYEPFGLTALEAMACG-LPVVATAVG--GPRDIVVDGVTGLLVDPRDPEALAAALRRLLTDPA 370 (398)
T ss_pred HHHHHHHHhCCEEEecccccccCcHHHHHHhcC-CCEEECCCC--CHHHHccCCCCeEEeCCCCHHHHHHHHHHHHhCHH
Confidence 346778899999999987777788899999999 599988742 233334323566777877777666655443 356
Q ss_pred HHHHHHHHhcccccccceee
Q 048016 348 VILRKQRLLANPSMKQAMLF 367 (416)
Q Consensus 348 ~~~~mq~~l~~~~~~~~f~y 367 (416)
...+|.++..+ .+..+|.|
T Consensus 371 ~~~~~~~~a~~-~~~~~~s~ 389 (398)
T cd03800 371 LRRRLSRAGLR-RARARYTW 389 (398)
T ss_pred HHHHHHHHHHH-HHHHhCCH
Confidence 67777766543 23345544
No 16
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=93.33 E-value=0.15 Score=51.13 Aligned_cols=85 Identities=16% Similarity=0.051 Sum_probs=60.1
Q ss_pred cccHHHhcccceeEEecCCCCCCchhHHHHHHhCceeEEeeccccCCCCCCCCCCceEEEEcCCChhcHHHHHhcC--Ch
Q 048016 269 PTTYYEDMQRAVFCLCPLGWAPWSPRLVEAVIFGCIPVIIADDIVLPFADAIPWEEIGVFIDEKDVPNLDAILTAI--PT 346 (416)
Q Consensus 269 ~~~y~~~~~~S~FCl~p~G~~~~s~Rl~dal~~GCIPVii~d~~~lPf~~~idw~~fsv~v~~~~~~~l~~~L~~i--~~ 346 (416)
..+..+.|+.|.++++|.-..+.+.-++|||.+|+ |||.+|.- ...+++.-......++..+..++.+.|..+ .+
T Consensus 263 ~~~~~~~~~~adi~v~pS~~Eg~~~~~lEAma~G~-Pvv~s~~~--g~~e~i~~~~~g~~~~~~d~~~la~~i~~l~~~~ 339 (374)
T TIGR03088 263 RDDVPALMQALDLFVLPSLAEGISNTILEAMASGL-PVIATAVG--GNPELVQHGVTGALVPPGDAVALARALQPYVSDP 339 (374)
T ss_pred cCCHHHHHHhcCEEEeccccccCchHHHHHHHcCC-CEEEcCCC--CcHHHhcCCCceEEeCCCCHHHHHHHHHHHHhCH
Confidence 45678889999999998777778889999999996 99998742 233445445567788888877766666543 34
Q ss_pred HHHHHHHHHh
Q 048016 347 EVILRKQRLL 356 (416)
Q Consensus 347 ~~~~~mq~~l 356 (416)
+...+|.++.
T Consensus 340 ~~~~~~~~~a 349 (374)
T TIGR03088 340 AARRAHGAAG 349 (374)
T ss_pred HHHHHHHHHH
Confidence 4455554443
No 17
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=93.28 E-value=0.11 Score=50.16 Aligned_cols=92 Identities=13% Similarity=0.114 Sum_probs=59.6
Q ss_pred ccHHHhcccceeEEecCCCCCCchhHHHHHHhCceeEEeeccccCCCCCCCCCCceEEEEcCCChhcHHHHHhcC--ChH
Q 048016 270 TTYYEDMQRAVFCLCPLGWAPWSPRLVEAVIFGCIPVIIADDIVLPFADAIPWEEIGVFIDEKDVPNLDAILTAI--PTE 347 (416)
Q Consensus 270 ~~y~~~~~~S~FCl~p~G~~~~s~Rl~dal~~GCIPVii~d~~~lPf~~~idw~~fsv~v~~~~~~~l~~~L~~i--~~~ 347 (416)
.+..+.|+.+..+++|....+.+.-++|||.+|| |||.++.-. ..+.+. +..+.++..+..++.+.+..+ .++
T Consensus 260 ~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~g~-PvI~~~~~~--~~e~~~--~~g~~~~~~~~~~l~~~i~~l~~~~~ 334 (365)
T cd03807 260 SDVPALLNALDVFVLSSLSEGFPNVLLEAMACGL-PVVATDVGD--NAELVG--DTGFLVPPGDPEALAEAIEALLADPA 334 (365)
T ss_pred ccHHHHHHhCCEEEeCCccccCCcHHHHHHhcCC-CEEEcCCCC--hHHHhh--cCCEEeCCCCHHHHHHHHHHHHhChH
Confidence 4577889999999999888888899999999996 788776321 122221 155667777776666555543 235
Q ss_pred HHHHHHHHhcccccccceee
Q 048016 348 VILRKQRLLANPSMKQAMLF 367 (416)
Q Consensus 348 ~~~~mq~~l~~~~~~~~f~y 367 (416)
+..+|.++..+ .+...|.|
T Consensus 335 ~~~~~~~~~~~-~~~~~~s~ 353 (365)
T cd03807 335 LRQALGEAARE-RIEENFSI 353 (365)
T ss_pred HHHHHHHHHHH-HHHHhCCH
Confidence 55666555432 23344443
No 18
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=93.23 E-value=0.15 Score=51.90 Aligned_cols=94 Identities=22% Similarity=0.184 Sum_probs=63.1
Q ss_pred ccHHHhcccceeEEecCCCCCCchhHHHHHHhCceeEEeeccccCCCCCCCCCCceEEEEcCCChhcHHHHHhcC--ChH
Q 048016 270 TTYYEDMQRAVFCLCPLGWAPWSPRLVEAVIFGCIPVIIADDIVLPFADAIPWEEIGVFIDEKDVPNLDAILTAI--PTE 347 (416)
Q Consensus 270 ~~y~~~~~~S~FCl~p~G~~~~s~Rl~dal~~GCIPVii~d~~~lPf~~~idw~~fsv~v~~~~~~~l~~~L~~i--~~~ 347 (416)
.++.+.|+.|..++.|.-....+.-++|||.+|| |||.+|. -+..+++.=..-.+.++..|...+-+.+..+ .++
T Consensus 292 ~~~~~~l~~adv~v~~s~~e~~~~~llEAmA~G~-PVIas~~--~g~~e~i~~~~~G~lv~~~d~~~la~~i~~ll~~~~ 368 (396)
T cd03818 292 DQYLALLQVSDVHVYLTYPFVLSWSLLEAMACGC-LVVGSDT--APVREVITDGENGLLVDFFDPDALAAAVIELLDDPA 368 (396)
T ss_pred HHHHHHHHhCcEEEEcCcccccchHHHHHHHCCC-CEEEcCC--CCchhhcccCCceEEcCCCCHHHHHHHHHHHHhCHH
Confidence 4677889999999988766666778999999999 8887764 2445666545567778887777666555432 345
Q ss_pred HHHHHHHHhcccccccceee
Q 048016 348 VILRKQRLLANPSMKQAMLF 367 (416)
Q Consensus 348 ~~~~mq~~l~~~~~~~~f~y 367 (416)
...+|.++..+ .+..+|.|
T Consensus 369 ~~~~l~~~ar~-~~~~~fs~ 387 (396)
T cd03818 369 RRARLRRAARR-TALRYDLL 387 (396)
T ss_pred HHHHHHHHHHH-HHHHhccH
Confidence 56667665543 23334443
No 19
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=92.64 E-value=0.18 Score=48.72 Aligned_cols=85 Identities=18% Similarity=0.163 Sum_probs=60.3
Q ss_pred ccHHHhcccceeEEecCC-CCCCchhHHHHHHhCceeEEeeccccCCCCCCCCCCceEEEEcCCChhcHHHHHhcC--Ch
Q 048016 270 TTYYEDMQRAVFCLCPLG-WAPWSPRLVEAVIFGCIPVIIADDIVLPFADAIPWEEIGVFIDEKDVPNLDAILTAI--PT 346 (416)
Q Consensus 270 ~~y~~~~~~S~FCl~p~G-~~~~s~Rl~dal~~GCIPVii~d~~~lPf~~~idw~~fsv~v~~~~~~~l~~~L~~i--~~ 346 (416)
.+..+.++.+..+++|.- .++.+..++|||.+| +|||.++.- ...+.++-....+.++..+..++.+.+..+ .+
T Consensus 254 ~~~~~~~~~ad~~i~ps~~~e~~~~~~~Ea~a~G-~Pvi~~~~~--~~~e~i~~~~~g~~~~~~d~~~l~~~i~~l~~~~ 330 (359)
T cd03823 254 EEIDDFYAEIDVLVVPSIWPENFPLVIREALAAG-VPVIASDIG--GMAELVRDGVNGLLFPPGDAEDLAAALERLIDDP 330 (359)
T ss_pred HHHHHHHHhCCEEEEcCcccCCCChHHHHHHHCC-CCEEECCCC--CHHHHhcCCCcEEEECCCCHHHHHHHHHHHHhCh
Confidence 467788999999999974 467788899999999 677777631 233445555567888888877666555443 45
Q ss_pred HHHHHHHHHhc
Q 048016 347 EVILRKQRLLA 357 (416)
Q Consensus 347 ~~~~~mq~~l~ 357 (416)
+...+|+++..
T Consensus 331 ~~~~~~~~~~~ 341 (359)
T cd03823 331 DLLERLRAGIE 341 (359)
T ss_pred HHHHHHHHhHH
Confidence 66777776654
No 20
>PF00852 Glyco_transf_10: Glycosyltransferase family 10 (fucosyltransferase); InterPro: IPR001503 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 10 GT10 from CAZY comprises enzymes with two known activities; galactoside 3(4)-L-fucosyltransferase (2.4.1.65 from EC) and galactoside 3-fucosyltransferase (2.4.1.152 from EC). The galactoside 3-fucosyltransferases display similarities with the alpha-2 and alpha-6-fucosyltranferases []. The biosynthesis of the carbohydrate antigen sialyl Lewis X (sLe(x)) is dependent on the activity of an galactoside 3-fucosyltransferase. This enzyme catalyses the transfer of fucose from GDP-beta-fucose to the 3-OH of N-acetylglucosamine present in lactosamine acceptors []. Some of the proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Galactoside 3(4)-L-fucosyltransferase (2.4.1.65 from EC) belongs to the Lewis blood group system and is associated with Le(a/b) antigen. ; GO: 0008417 fucosyltransferase activity, 0006486 protein glycosylation, 0016020 membrane; PDB: 2NZX_B 2NZW_C 2NZY_C.
Probab=92.58 E-value=0.16 Score=51.69 Aligned_cols=93 Identities=13% Similarity=0.100 Sum_probs=61.1
Q ss_pred hHHHHHHHhcCCCceeee--cC-----CcccHHHhcccceeEEecCC---CCCCchhHHHHHHhCceeEEee--cc-c--
Q 048016 248 ARAAVWENFKDNPLFDIS--TE-----HPTTYYEDMQRAVFCLCPLG---WAPWSPRLVEAVIFGCIPVIIA--DD-I-- 312 (416)
Q Consensus 248 vR~~l~~~~~~~~~~~~~--~~-----~~~~y~~~~~~S~FCl~p~G---~~~~s~Rl~dal~~GCIPVii~--d~-~-- 312 (416)
.|..+.+.+.+...+++- |. ......+.+++-+|.|+... .+-.+-.|++|+.+|||||+++ .. +
T Consensus 190 ~R~~~~~~L~~~~~vd~yG~c~~~~~~~~~~~~~~~~~ykF~lafENs~c~dYiTEK~~~al~~g~VPI~~G~~~~~~~~ 269 (349)
T PF00852_consen 190 GREEYVRELSKYIPVDSYGKCGNNNPCPRDCKLELLSKYKFYLAFENSNCPDYITEKFWNALLAGTVPIYWGPPRPNYEE 269 (349)
T ss_dssp HHHHHHHHHHTTS-EEE-SSTT--SSS--S-HHHHHHTEEEEEEE-SS--TT---HHHHHHHHTTSEEEEES---TTHHH
T ss_pred cHHHHHHHHHhhcCeEccCCCCCCCCcccccccccccCcEEEEEecCCCCCCCCCHHHHHHHHCCeEEEEECCEeccccc
Confidence 488888888776555542 21 12357889999999999643 2345888999999999999999 32 2
Q ss_pred cCCCCCCCCCCceEEEEcCCChhcHHHHHhcCCh
Q 048016 313 VLPFADAIPWEEIGVFIDEKDVPNLDAILTAIPT 346 (416)
Q Consensus 313 ~lPf~~~idw~~fsv~v~~~~~~~l~~~L~~i~~ 346 (416)
.+|=...|+.++|. ...+|.+.|+.+..
T Consensus 270 ~~P~~SfI~~~df~------s~~~La~yl~~l~~ 297 (349)
T PF00852_consen 270 FAPPNSFIHVDDFK------SPKELADYLKYLDK 297 (349)
T ss_dssp HS-GGGSEEGGGSS------SHHHHHHHHHHHHT
T ss_pred CCCCCCccchhcCC------CHHHHHHHHHHHhc
Confidence 36656677776663 46678888887743
No 21
>cd03809 GT1_mtfB_like This family is most closely related to the GT1 family of glycosyltransferases. mtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the previously synthesized polysaccharide.
Probab=92.22 E-value=0.19 Score=48.88 Aligned_cols=83 Identities=14% Similarity=0.168 Sum_probs=58.0
Q ss_pred ccHHHhcccceeEEecCCCCCCchhHHHHHHhCceeEEeeccccCCCCCCCCCCceEEEEcCCChhcHHHHHhc-CC-hH
Q 048016 270 TTYYEDMQRAVFCLCPLGWAPWSPRLVEAVIFGCIPVIIADDIVLPFADAIPWEEIGVFIDEKDVPNLDAILTA-IP-TE 347 (416)
Q Consensus 270 ~~y~~~~~~S~FCl~p~G~~~~s~Rl~dal~~GCIPVii~d~~~lPf~~~idw~~fsv~v~~~~~~~l~~~L~~-i~-~~ 347 (416)
.++.+.++.+.+++.|.-....+..++|||.+|| |||.++.- .+.+.+ .+..+.++..+..++.+.|.. +. ++
T Consensus 264 ~~~~~~~~~~d~~l~ps~~e~~~~~~~Ea~a~G~-pvI~~~~~--~~~e~~--~~~~~~~~~~~~~~~~~~i~~l~~~~~ 338 (365)
T cd03809 264 EELAALYRGARAFVFPSLYEGFGLPVLEAMACGT-PVIASNIS--SLPEVA--GDAALYFDPLDPEALAAAIERLLEDPA 338 (365)
T ss_pred hHHHHHHhhhhhhcccchhccCCCCHHHHhcCCC-cEEecCCC--Ccccee--cCceeeeCCCCHHHHHHHHHHHhcCHH
Confidence 5677889999999999766667788999999997 77777642 233344 345667777787777777665 33 45
Q ss_pred HHHHHHHHhc
Q 048016 348 VILRKQRLLA 357 (416)
Q Consensus 348 ~~~~mq~~l~ 357 (416)
...+|.++..
T Consensus 339 ~~~~~~~~~~ 348 (365)
T cd03809 339 LREELRERGL 348 (365)
T ss_pred HHHHHHHHHH
Confidence 5566665543
No 22
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=92.18 E-value=0.084 Score=50.84 Aligned_cols=71 Identities=20% Similarity=0.155 Sum_probs=50.9
Q ss_pred ccHHHhcccceeEEecCCCCCCchhHHHHHHhCceeEEeeccccCCCCCCCCCCceEEEEcCCChhcHHHHHhc
Q 048016 270 TTYYEDMQRAVFCLCPLGWAPWSPRLVEAVIFGCIPVIIADDIVLPFADAIPWEEIGVFIDEKDVPNLDAILTA 343 (416)
Q Consensus 270 ~~y~~~~~~S~FCl~p~G~~~~s~Rl~dal~~GCIPVii~d~~~lPf~~~idw~~fsv~v~~~~~~~l~~~L~~ 343 (416)
.+..+.+.+|.++++|...++.+..++||+.+|| |||.++.-. ..+.+.-....+.+...+..++.+.|..
T Consensus 270 ~~~~~~~~~ad~~i~~~~~~~~~~~~~Ea~~~G~-pvI~~~~~~--~~~~~~~~~~g~~~~~~~~~~l~~~i~~ 340 (377)
T cd03798 270 EEVPAYYAAADVFVLPSLREGFGLVLLEAMACGL-PVVATDVGG--IPEIITDGENGLLVPPGDPEALAEAILR 340 (377)
T ss_pred HHHHHHHHhcCeeecchhhccCChHHHHHHhcCC-CEEEecCCC--hHHHhcCCcceeEECCCCHHHHHHHHHH
Confidence 4577889999999999887888899999999999 677765421 2233333444567777787766655544
No 23
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=92.10 E-value=0.3 Score=48.30 Aligned_cols=94 Identities=23% Similarity=0.220 Sum_probs=60.7
Q ss_pred ccHHHhcccceeEEecCCC------CCCchhHHHHHHhCceeEEeeccccCCCCCCCCCCceEEEEcCCChhcHHHHHhc
Q 048016 270 TTYYEDMQRAVFCLCPLGW------APWSPRLVEAVIFGCIPVIIADDIVLPFADAIPWEEIGVFIDEKDVPNLDAILTA 343 (416)
Q Consensus 270 ~~y~~~~~~S~FCl~p~G~------~~~s~Rl~dal~~GCIPVii~d~~~lPf~~~idw~~fsv~v~~~~~~~l~~~L~~ 343 (416)
.+..+.++.|...+.|.-. .+.+..++|||.+|| |||.+|.-- ..+.+.=....+.++..+..++.+.|..
T Consensus 256 ~~l~~~~~~ad~~v~ps~~~~~~~~E~~~~~~~EA~a~G~-PvI~s~~~~--~~e~i~~~~~g~~~~~~d~~~l~~~i~~ 332 (367)
T cd05844 256 AEVRELMRRARIFLQPSVTAPSGDAEGLPVVLLEAQASGV-PVVATRHGG--IPEAVEDGETGLLVPEGDVAALAAALGR 332 (367)
T ss_pred HHHHHHHHhCCEEEECcccCCCCCccCCchHHHHHHHcCC-CEEEeCCCC--chhheecCCeeEEECCCCHHHHHHHHHH
Confidence 4567788888888887532 346788999999996 999887632 2333333456778888887777666654
Q ss_pred C--ChHHHHHHHHHhcccccccceee
Q 048016 344 I--PTEVILRKQRLLANPSMKQAMLF 367 (416)
Q Consensus 344 i--~~~~~~~mq~~l~~~~~~~~f~y 367 (416)
+ +++...+|.++..+ .+.++|.|
T Consensus 333 l~~~~~~~~~~~~~a~~-~~~~~~s~ 357 (367)
T cd05844 333 LLADPDLRARMGAAGRR-RVEERFDL 357 (367)
T ss_pred HHcCHHHHHHHHHHHHH-HHHHHCCH
Confidence 3 34456666655432 13344544
No 24
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional
Probab=91.92 E-value=0.53 Score=48.57 Aligned_cols=94 Identities=17% Similarity=0.166 Sum_probs=64.3
Q ss_pred ccHHHhcccceeEEecCC------CCCCchhHHHHHHhCceeEEeeccccCCCCCCCCCCceEEEEcCCChhcHHHHHhc
Q 048016 270 TTYYEDMQRAVFCLCPLG------WAPWSPRLVEAVIFGCIPVIIADDIVLPFADAIPWEEIGVFIDEKDVPNLDAILTA 343 (416)
Q Consensus 270 ~~y~~~~~~S~FCl~p~G------~~~~s~Rl~dal~~GCIPVii~d~~~lPf~~~idw~~fsv~v~~~~~~~l~~~L~~ 343 (416)
.+..+.++.+..++.|.= ..+...-++|||.+|+ |||.++.--. .+++.=..-.+.+++.|...+.+.|..
T Consensus 290 ~el~~~l~~aDv~v~pS~~~~~g~~Eg~p~~llEAma~G~-PVI~t~~~g~--~E~v~~~~~G~lv~~~d~~~la~ai~~ 366 (406)
T PRK15427 290 HEVKAMLDDADVFLLPSVTGADGDMEGIPVALMEAMAVGI-PVVSTLHSGI--PELVEADKSGWLVPENDAQALAQRLAA 366 (406)
T ss_pred HHHHHHHHhCCEEEECCccCCCCCccCccHHHHHHHhCCC-CEEEeCCCCc--hhhhcCCCceEEeCCCCHHHHHHHHHH
Confidence 457788999999999852 1456778999999995 9998874322 244433445677888888877777665
Q ss_pred C---ChHHHHHHHHHhcccccccceee
Q 048016 344 I---PTEVILRKQRLLANPSMKQAMLF 367 (416)
Q Consensus 344 i---~~~~~~~mq~~l~~~~~~~~f~y 367 (416)
+ +++...+|.++..+ .+...|.|
T Consensus 367 l~~~d~~~~~~~~~~ar~-~v~~~f~~ 392 (406)
T PRK15427 367 FSQLDTDELAPVVKRARE-KVETDFNQ 392 (406)
T ss_pred HHhCCHHHHHHHHHHHHH-HHHHhcCH
Confidence 4 56677788776543 24455543
No 25
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=91.79 E-value=0.21 Score=48.30 Aligned_cols=83 Identities=19% Similarity=0.265 Sum_probs=52.6
Q ss_pred ccHHHhcccceeEEecCCCCCCchhHHHHHHhCceeEEeeccccCCCCCCCCCCceEEEEcCCChhcHHHHHhcC--ChH
Q 048016 270 TTYYEDMQRAVFCLCPLGWAPWSPRLVEAVIFGCIPVIIADDIVLPFADAIPWEEIGVFIDEKDVPNLDAILTAI--PTE 347 (416)
Q Consensus 270 ~~y~~~~~~S~FCl~p~G~~~~s~Rl~dal~~GCIPVii~d~~~lPf~~~idw~~fsv~v~~~~~~~l~~~L~~i--~~~ 347 (416)
.+..+.++.+.++++|.-..+.+..++|||.+|| |||.++.- ...+.+.= ...+.++.+ ..++.+.+..+ .++
T Consensus 273 ~~~~~~~~~adv~v~ps~~e~~~~~~~Eama~G~-PvI~~~~~--~~~~~~~~-~~~~~~~~~-~~~~~~~i~~l~~~~~ 347 (375)
T cd03821 273 EDKAAALADADLFVLPSHSENFGIVVAEALACGT-PVVTTDKV--PWQELIEY-GCGWVVDDD-VDALAAALRRALELPQ 347 (375)
T ss_pred HHHHHHHhhCCEEEeccccCCCCcHHHHHHhcCC-CEEEcCCC--CHHHHhhc-CceEEeCCC-hHHHHHHHHHHHhCHH
Confidence 4677889999999999877788899999999997 88877642 22233221 344444443 24444444332 225
Q ss_pred HHHHHHHHhc
Q 048016 348 VILRKQRLLA 357 (416)
Q Consensus 348 ~~~~mq~~l~ 357 (416)
..++|.++..
T Consensus 348 ~~~~~~~~~~ 357 (375)
T cd03821 348 RLKAMGENGR 357 (375)
T ss_pred HHHHHHHHHH
Confidence 5666665544
No 26
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=91.35 E-value=0.37 Score=47.23 Aligned_cols=84 Identities=13% Similarity=0.036 Sum_probs=57.1
Q ss_pred cHHHhcccceeEEecCCCCCCchhHHHHHHhCceeEEeeccccCCCCCCCCCCceEEEEcCCChhcHHHHHhcC--ChHH
Q 048016 271 TYYEDMQRAVFCLCPLGWAPWSPRLVEAVIFGCIPVIIADDIVLPFADAIPWEEIGVFIDEKDVPNLDAILTAI--PTEV 348 (416)
Q Consensus 271 ~y~~~~~~S~FCl~p~G~~~~s~Rl~dal~~GCIPVii~d~~~lPf~~~idw~~fsv~v~~~~~~~l~~~L~~i--~~~~ 348 (416)
++.+.|+.|.+.+.|....+.+.-++|||.+||- ||.++. -+..+.+.=..-.+.++..+..++.+.|..+ .+++
T Consensus 257 ~~~~~~~~ad~~l~ps~~e~~g~~~~Eam~~g~P-vI~~~~--~~~~e~~~~~~~g~~~~~~~~~~~~~~l~~l~~~~~~ 333 (365)
T cd03825 257 SLALIYSAADVFVVPSLQENFPNTAIEALACGTP-VVAFDV--GGIPDIVDHGVTGYLAKPGDPEDLAEGIEWLLADPDE 333 (365)
T ss_pred HHHHHHHhCCEEEeccccccccHHHHHHHhcCCC-EEEecC--CCChhheeCCCceEEeCCCCHHHHHHHHHHHHhCHHH
Confidence 4567899999999999888889999999999985 565553 2333444323456677777766655555432 3455
Q ss_pred HHHHHHHhc
Q 048016 349 ILRKQRLLA 357 (416)
Q Consensus 349 ~~~mq~~l~ 357 (416)
..+|+++..
T Consensus 334 ~~~~~~~~~ 342 (365)
T cd03825 334 REELGEAAR 342 (365)
T ss_pred HHHHHHHHH
Confidence 667776554
No 27
>TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family. This model describes Corynebacterium glutamicum GlgA and closely related proteins in several other species. This enzyme is required for glycogen biosynthesis and appears to replace the distantly related TIGR02095 family of ADP-glucose type glycogen synthase in Corynebacterium glutamicum, Mycobacterium tuberculosis, Bifidobacterium longum, and Streptomyces coelicolor.
Probab=91.23 E-value=0.29 Score=49.06 Aligned_cols=95 Identities=15% Similarity=0.220 Sum_probs=60.9
Q ss_pred cccHHHhcccceeEEecCCCCCCchhHHHHHHhCceeEEeeccccCCCCCCCCCCceEEEEcCCCh------hcHHHHHh
Q 048016 269 PTTYYEDMQRAVFCLCPLGWAPWSPRLVEAVIFGCIPVIIADDIVLPFADAIPWEEIGVFIDEKDV------PNLDAILT 342 (416)
Q Consensus 269 ~~~y~~~~~~S~FCl~p~G~~~~s~Rl~dal~~GCIPVii~d~~~lPf~~~idw~~fsv~v~~~~~------~~l~~~L~ 342 (416)
..+..+.++.|..++.|.-..+.+.-++|||.+|| |||.+|.-- ..+++.=....+.++..+. ..+.+.|.
T Consensus 271 ~~~~~~~~~~aDv~v~ps~~e~~g~~~lEA~a~G~-PvI~s~~~~--~~e~i~~~~~G~~~~~~~~~~~~~~~~l~~~i~ 347 (388)
T TIGR02149 271 KEELVELLSNAEVFVCPSIYEPLGIVNLEAMACGT-PVVASATGG--IPEVVVDGETGFLVPPDNSDADGFQAELAKAIN 347 (388)
T ss_pred HHHHHHHHHhCCEEEeCCccCCCChHHHHHHHcCC-CEEEeCCCC--HHHHhhCCCceEEcCCCCCcccchHHHHHHHHH
Confidence 34577889999999999777777888999999999 888887422 2233322334566666655 55555554
Q ss_pred cC--ChHHHHHHHHHhcccccccceee
Q 048016 343 AI--PTEVILRKQRLLANPSMKQAMLF 367 (416)
Q Consensus 343 ~i--~~~~~~~mq~~l~~~~~~~~f~y 367 (416)
.+ ++++..+|.++..+ .+...|.|
T Consensus 348 ~l~~~~~~~~~~~~~a~~-~~~~~~s~ 373 (388)
T TIGR02149 348 ILLADPELAKKMGIAGRK-RAEEEFSW 373 (388)
T ss_pred HHHhCHHHHHHHHHHHHH-HHHHhCCH
Confidence 33 45666677665442 12334544
No 28
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=91.16 E-value=0.37 Score=48.84 Aligned_cols=93 Identities=16% Similarity=0.145 Sum_probs=61.4
Q ss_pred ccHHHhcccceeEEecCCCCCCchhHHHHHHhCceeEEeeccccCCCCCCCCCCceEEEEcCCChhcHHHHHhcC--ChH
Q 048016 270 TTYYEDMQRAVFCLCPLGWAPWSPRLVEAVIFGCIPVIIADDIVLPFADAIPWEEIGVFIDEKDVPNLDAILTAI--PTE 347 (416)
Q Consensus 270 ~~y~~~~~~S~FCl~p~G~~~~s~Rl~dal~~GCIPVii~d~~~lPf~~~idw~~fsv~v~~~~~~~l~~~L~~i--~~~ 347 (416)
.+..+.|+.+..++.|.=..+.+.-++|||.+|| |||.++.-- ..+.+.=....+.++..+...+.+.|..+ +++
T Consensus 294 ~~~~~~l~~ad~~v~ps~~E~~g~~~lEAma~G~-Pvi~~~~~~--~~e~i~~~~~g~~~~~~d~~~la~~i~~~l~~~~ 370 (405)
T TIGR03449 294 EELVHVYRAADVVAVPSYNESFGLVAMEAQACGT-PVVAARVGG--LPVAVADGETGLLVDGHDPADWADALARLLDDPR 370 (405)
T ss_pred HHHHHHHHhCCEEEECCCCCCcChHHHHHHHcCC-CEEEecCCC--cHhhhccCCceEECCCCCHHHHHHHHHHHHhCHH
Confidence 4677889999999998766677888999999996 888877421 22333223456677777877665555432 345
Q ss_pred HHHHHHHHhcccccccceee
Q 048016 348 VILRKQRLLANPSMKQAMLF 367 (416)
Q Consensus 348 ~~~~mq~~l~~~~~~~~f~y 367 (416)
...+|.++..+ ..+.|.|
T Consensus 371 ~~~~~~~~~~~--~~~~fsw 388 (405)
T TIGR03449 371 TRIRMGAAAVE--HAAGFSW 388 (405)
T ss_pred HHHHHHHHHHH--HHHhCCH
Confidence 56777766543 2234554
No 29
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=90.94 E-value=0.34 Score=47.38 Aligned_cols=81 Identities=15% Similarity=0.144 Sum_probs=54.1
Q ss_pred ccHHHhcccceeEEecCCCCCCchhHHHHHHhCceeEEeeccccCCCCCCCCCCceEEEEcCCChhcHHHHHhcC---Ch
Q 048016 270 TTYYEDMQRAVFCLCPLGWAPWSPRLVEAVIFGCIPVIIADDIVLPFADAIPWEEIGVFIDEKDVPNLDAILTAI---PT 346 (416)
Q Consensus 270 ~~y~~~~~~S~FCl~p~G~~~~s~Rl~dal~~GCIPVii~d~~~lPf~~~idw~~fsv~v~~~~~~~l~~~L~~i---~~ 346 (416)
.+..+.|+.+.+.+.|....+.+..++|||.+|| |||.+|.- ...+.+. +....++..+..++.+.+..+ ++
T Consensus 254 ~~~~~~~~~ad~~v~~s~~e~~~~~~~Ea~a~G~-PvI~~~~~--~~~e~i~--~~g~~~~~~~~~~~~~~i~~ll~~~~ 328 (360)
T cd04951 254 DDIAAYYNAADLFVLSSAWEGFGLVVAEAMACEL-PVVATDAG--GVREVVG--DSGLIVPISDPEALANKIDEILKMSG 328 (360)
T ss_pred ccHHHHHHhhceEEecccccCCChHHHHHHHcCC-CEEEecCC--ChhhEec--CCceEeCCCCHHHHHHHHHHHHhCCH
Confidence 4567889999999999888888899999999999 88887641 1223221 234556667776666665543 34
Q ss_pred HHHHHHHHH
Q 048016 347 EVILRKQRL 355 (416)
Q Consensus 347 ~~~~~mq~~ 355 (416)
+....|.+.
T Consensus 329 ~~~~~~~~~ 337 (360)
T cd04951 329 EERDIIGAR 337 (360)
T ss_pred HHHHHHHHH
Confidence 444444443
No 30
>PF13524 Glyco_trans_1_2: Glycosyl transferases group 1
Probab=90.59 E-value=0.28 Score=39.17 Aligned_cols=81 Identities=12% Similarity=0.005 Sum_probs=45.4
Q ss_pred EEecCCCCCCchhHHHHHHhCceeEEeeccccCCCCCCCCCCceEEEEc-CCChhcHHHHHhcCChHHHHHHHHHhcccc
Q 048016 282 CLCPLGWAPWSPRLVEAVIFGCIPVIIADDIVLPFADAIPWEEIGVFID-EKDVPNLDAILTAIPTEVILRKQRLLANPS 360 (416)
Q Consensus 282 Cl~p~G~~~~s~Rl~dal~~GCIPVii~d~~~lPf~~~idw~~fsv~v~-~~~~~~l~~~L~~i~~~~~~~mq~~l~~~~ 360 (416)
||-|.-.+..+.|++|+|.+|+..|.-.. ..+.+.++..+-.+.++ .+++.+....|.+ .+++.++|.++..+ .
T Consensus 2 ~Ln~~~~~~~~~r~~E~~a~G~~vi~~~~---~~~~~~~~~~~~~~~~~~~~el~~~i~~ll~-~~~~~~~ia~~a~~-~ 76 (92)
T PF13524_consen 2 NLNPSRSDGPNMRIFEAMACGTPVISDDS---PGLREIFEDGEHIITYNDPEELAEKIEYLLE-NPEERRRIAKNARE-R 76 (92)
T ss_pred EeeCCCCCCCchHHHHHHHCCCeEEECCh---HHHHHHcCCCCeEEEECCHHHHHHHHHHHHC-CHHHHHHHHHHHHH-H
Confidence 44554445678899999999997655432 12223344454455554 3344443333333 67778888776653 2
Q ss_pred cccceee
Q 048016 361 MKQAMLF 367 (416)
Q Consensus 361 ~~~~f~y 367 (416)
++.++.|
T Consensus 77 v~~~~t~ 83 (92)
T PF13524_consen 77 VLKRHTW 83 (92)
T ss_pred HHHhCCH
Confidence 4444433
No 31
>PRK09814 beta-1,6-galactofuranosyltransferase; Provisional
Probab=89.50 E-value=0.45 Score=47.62 Aligned_cols=83 Identities=19% Similarity=0.231 Sum_probs=58.0
Q ss_pred ccHHHhcccceeEEecCCCC-----------CCchhHHHHHHhCceeEEeeccccCCCCCCCCCCceEEEEcCCChhcHH
Q 048016 270 TTYYEDMQRAVFCLCPLGWA-----------PWSPRLVEAVIFGCIPVIIADDIVLPFADAIPWEEIGVFIDEKDVPNLD 338 (416)
Q Consensus 270 ~~y~~~~~~S~FCl~p~G~~-----------~~s~Rl~dal~~GCIPVii~d~~~lPf~~~idw~~fsv~v~~~~~~~l~ 338 (416)
++..+.++. .|+|++.+++ .....++++|.+| +|||+++.-.++ +++.=....+.++ ++.++.
T Consensus 218 eel~~~l~~-~~gLv~~~~~~~~~~~~y~~~~~P~K~~~ymA~G-~PVI~~~~~~~~--~~V~~~~~G~~v~--~~~el~ 291 (333)
T PRK09814 218 EELPNELSK-GFGLVWDGDTNDGEYGEYYKYNNPHKLSLYLAAG-LPVIVWSKAAIA--DFIVENGLGFVVD--SLEELP 291 (333)
T ss_pred HHHHHHHhc-CcCeEEcCCCCCccchhhhhccchHHHHHHHHCC-CCEEECCCccHH--HHHHhCCceEEeC--CHHHHH
Confidence 445556655 8999887651 2344588888888 599998753322 3333245666666 567899
Q ss_pred HHHhcCChHHHHHHHHHhcc
Q 048016 339 AILTAIPTEVILRKQRLLAN 358 (416)
Q Consensus 339 ~~L~~i~~~~~~~mq~~l~~ 358 (416)
+.|..++++++.+|+++..+
T Consensus 292 ~~l~~~~~~~~~~m~~n~~~ 311 (333)
T PRK09814 292 EIIDNITEEEYQEMVENVKK 311 (333)
T ss_pred HHHHhcCHHHHHHHHHHHHH
Confidence 99999999999999998764
No 32
>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional
Probab=89.36 E-value=1.1 Score=45.55 Aligned_cols=94 Identities=10% Similarity=0.050 Sum_probs=58.3
Q ss_pred ccHHHhcccceeEEecCCC-CCCchhHHHHHHhCceeEEeeccccCCCCCCCCCCceEE-EEcCCChhcHHHHHhc-CCh
Q 048016 270 TTYYEDMQRAVFCLCPLGW-APWSPRLVEAVIFGCIPVIIADDIVLPFADAIPWEEIGV-FIDEKDVPNLDAILTA-IPT 346 (416)
Q Consensus 270 ~~y~~~~~~S~FCl~p~G~-~~~s~Rl~dal~~GCIPVii~d~~~lPf~~~idw~~fsv-~v~~~~~~~l~~~L~~-i~~ 346 (416)
.+..+.++.|..+++|..+ .+.+.-++|||.+| +|||.++.-- ..+++.=..-.. .++..+...+.+.|.. +.+
T Consensus 268 ~~l~~~~~~aDv~v~pS~~~E~f~~~~lEAma~G-~PVI~s~~gg--~~Eiv~~~~~G~~l~~~~d~~~la~~I~~ll~d 344 (380)
T PRK15484 268 EKMHNYYPLADLVVVPSQVEEAFCMVAVEAMAAG-KPVLASTKGG--ITEFVLEGITGYHLAEPMTSDSIISDINRTLAD 344 (380)
T ss_pred HHHHHHHHhCCEEEeCCCCccccccHHHHHHHcC-CCEEEeCCCC--cHhhcccCCceEEEeCCCCHHHHHHHHHHHHcC
Confidence 4567789999999999864 66778899999999 7899887522 223332122233 4456666665555533 344
Q ss_pred HHHHHHHHHhcccccccceee
Q 048016 347 EVILRKQRLLANPSMKQAMLF 367 (416)
Q Consensus 347 ~~~~~mq~~l~~~~~~~~f~y 367 (416)
.+..+|.++..+ .+..+|.|
T Consensus 345 ~~~~~~~~~ar~-~~~~~fsw 364 (380)
T PRK15484 345 PELTQIAEQAKD-FVFSKYSW 364 (380)
T ss_pred HHHHHHHHHHHH-HHHHhCCH
Confidence 445666655442 23445555
No 33
>PF13692 Glyco_trans_1_4: Glycosyl transferases group 1; PDB: 3OY2_A 3OY7_B 2Q6V_A 2HY7_A 3CV3_A 3CUY_A.
Probab=89.16 E-value=0.3 Score=41.34 Aligned_cols=68 Identities=21% Similarity=0.219 Sum_probs=40.0
Q ss_pred ccHHHhcccceeEEecCC-CCCCchhHHHHHHhCceeEEeeccccCCCCCCCCCCceEEEEcCCChhcHHHHHh
Q 048016 270 TTYYEDMQRAVFCLCPLG-WAPWSPRLVEAVIFGCIPVIIADDIVLPFADAIPWEEIGVFIDEKDVPNLDAILT 342 (416)
Q Consensus 270 ~~y~~~~~~S~FCl~p~G-~~~~s~Rl~dal~~GCIPVii~d~~~lPf~~~idw~~fsv~v~~~~~~~l~~~L~ 342 (416)
.++.+.++++.++++|.- ++..+..++|++.+||-. |.++. ++.+.+.-....+.+ ..+..++.+.|.
T Consensus 62 ~e~~~~l~~~dv~l~p~~~~~~~~~k~~e~~~~G~pv-i~~~~---~~~~~~~~~~~~~~~-~~~~~~l~~~i~ 130 (135)
T PF13692_consen 62 EELPEILAAADVGLIPSRFNEGFPNKLLEAMAAGKPV-IASDN---GAEGIVEEDGCGVLV-ANDPEELAEAIE 130 (135)
T ss_dssp HHHHHHHHC-SEEEE-BSS-SCC-HHHHHHHCTT--E-EEEHH---HCHCHS---SEEEE--TT-HHHHHHHHH
T ss_pred HHHHHHHHhCCEEEEEeeCCCcCcHHHHHHHHhCCCE-EECCc---chhhheeecCCeEEE-CCCHHHHHHHHH
Confidence 368888999999999863 235678999999999854 55554 344433335566666 666666665554
No 34
>PRK10307 putative glycosyl transferase; Provisional
Probab=88.53 E-value=0.71 Score=47.16 Aligned_cols=94 Identities=14% Similarity=0.130 Sum_probs=62.3
Q ss_pred ccHHHhcccceeEEecCCCCC----CchhHHHHHHhCceeEEeeccccCCCCCCCCCCceEEEEcCCChhcHHHHHhcC-
Q 048016 270 TTYYEDMQRAVFCLCPLGWAP----WSPRLVEAVIFGCIPVIIADDIVLPFADAIPWEEIGVFIDEKDVPNLDAILTAI- 344 (416)
Q Consensus 270 ~~y~~~~~~S~FCl~p~G~~~----~s~Rl~dal~~GCIPVii~d~~~lPf~~~idw~~fsv~v~~~~~~~l~~~L~~i- 344 (416)
.+..+.++.|..++.|.=.+. ....++|||.+| +|||.++.--....+++. .-.+.++..+..++.+.|..+
T Consensus 295 ~~~~~~~~~aDi~v~ps~~e~~~~~~p~kl~eama~G-~PVi~s~~~g~~~~~~i~--~~G~~~~~~d~~~la~~i~~l~ 371 (412)
T PRK10307 295 DRLPALLKMADCHLLPQKAGAADLVLPSKLTNMLASG-RNVVATAEPGTELGQLVE--GIGVCVEPESVEALVAAIAALA 371 (412)
T ss_pred HHHHHHHHhcCEeEEeeccCcccccCcHHHHHHHHcC-CCEEEEeCCCchHHHHHh--CCcEEeCCCCHHHHHHHHHHHH
Confidence 466788899999888753222 244589999999 688888642222334555 467778888888888777655
Q ss_pred -ChHHHHHHHHHhcccccccceee
Q 048016 345 -PTEVILRKQRLLANPSMKQAMLF 367 (416)
Q Consensus 345 -~~~~~~~mq~~l~~~~~~~~f~y 367 (416)
+++...+|+++..+ .+..+|.|
T Consensus 372 ~~~~~~~~~~~~a~~-~~~~~fs~ 394 (412)
T PRK10307 372 RQALLRPKLGTVARE-YAERTLDK 394 (412)
T ss_pred hCHHHHHHHHHHHHH-HHHHHcCH
Confidence 34566777776653 24455655
No 35
>cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=88.43 E-value=1.8 Score=42.32 Aligned_cols=82 Identities=20% Similarity=0.242 Sum_probs=49.9
Q ss_pred ccHHHhcccceeEEecCCC-CCCchhHHHHHHhCceeEEeeccccCCCCCCCCCCceEEEEcCCC-hhcHHHHHhcCChH
Q 048016 270 TTYYEDMQRAVFCLCPLGW-APWSPRLVEAVIFGCIPVIIADDIVLPFADAIPWEEIGVFIDEKD-VPNLDAILTAIPTE 347 (416)
Q Consensus 270 ~~y~~~~~~S~FCl~p~G~-~~~s~Rl~dal~~GCIPVii~d~~~lPf~~~idw~~fsv~v~~~~-~~~l~~~L~~i~~~ 347 (416)
.+..+.+..+..++.|.-. ++.+..++|||.+|| |||.++.- +..+++.- -...++..+ +.+....|-. .++
T Consensus 259 ~~~~~~~~~ad~~v~ps~~~e~~~~~~~EAma~G~-PvI~s~~~--~~~e~~~~--~g~~~~~~~~l~~~i~~l~~-~~~ 332 (363)
T cd04955 259 QELLELLRYAALFYLHGHSVGGTNPSLLEAMAYGC-PVLASDNP--FNREVLGD--KAIYFKVGDDLASLLEELEA-DPE 332 (363)
T ss_pred HHHHHHHHhCCEEEeCCccCCCCChHHHHHHHcCC-CEEEecCC--ccceeecC--CeeEecCchHHHHHHHHHHh-CHH
Confidence 4566788888888888765 667888999999999 77777632 23344432 233445555 3333333322 235
Q ss_pred HHHHHHHHhc
Q 048016 348 VILRKQRLLA 357 (416)
Q Consensus 348 ~~~~mq~~l~ 357 (416)
.+.+|.++..
T Consensus 333 ~~~~~~~~~~ 342 (363)
T cd04955 333 EVSAMAKAAR 342 (363)
T ss_pred HHHHHHHHHH
Confidence 5666666543
No 36
>cd03792 GT1_Trehalose_phosphorylase Trehalose phosphorylase (TP) reversibly catalyzes trehalose synthesis and degradation from alpha-glucose-1-phosphate (alpha-Glc-1-P) and glucose. The catalyzing activity includes the phosphorolysis of trehalose, which produce alpha-Glc-1-P and glucose, and the subsequent synthesis of trehalose. This family is most closely related to the GT1 family of glycosyltransferases.
Probab=88.39 E-value=3.8 Score=41.05 Aligned_cols=92 Identities=16% Similarity=0.126 Sum_probs=56.7
Q ss_pred ccHHHhcccceeEEecCCCCCCchhHHHHHHhCceeEEeeccccCCCCCCCCCCceEEEEcCCC-hh-cHHHHHhcCChH
Q 048016 270 TTYYEDMQRAVFCLCPLGWAPWSPRLVEAVIFGCIPVIIADDIVLPFADAIPWEEIGVFIDEKD-VP-NLDAILTAIPTE 347 (416)
Q Consensus 270 ~~y~~~~~~S~FCl~p~G~~~~s~Rl~dal~~GCIPVii~d~~~lPf~~~idw~~fsv~v~~~~-~~-~l~~~L~~i~~~ 347 (416)
.+....++.+..++.|....+.+.-+.|||.+| +|||.++.--++ +.+.-....+.++..+ +. .|...|. +++
T Consensus 265 ~~~~~~~~~ad~~v~~s~~Eg~g~~~lEA~a~G-~Pvv~s~~~~~~--~~i~~~~~g~~~~~~~~~a~~i~~ll~--~~~ 339 (372)
T cd03792 265 LEVNALQRASTVVLQKSIREGFGLTVTEALWKG-KPVIAGPVGGIP--LQIEDGETGFLVDTVEEAAVRILYLLR--DPE 339 (372)
T ss_pred HHHHHHHHhCeEEEeCCCccCCCHHHHHHHHcC-CCEEEcCCCCch--hhcccCCceEEeCCcHHHHHHHHHHHc--CHH
Confidence 456678899999999988888899999999999 599998743222 3332233344444322 11 2333332 355
Q ss_pred HHHHHHHHhcccccccceee
Q 048016 348 VILRKQRLLANPSMKQAMLF 367 (416)
Q Consensus 348 ~~~~mq~~l~~~~~~~~f~y 367 (416)
...+|.++..+ .+...|.|
T Consensus 340 ~~~~~~~~a~~-~~~~~~s~ 358 (372)
T cd03792 340 LRRKMGANARE-HVRENFLI 358 (372)
T ss_pred HHHHHHHHHHH-HHHHHcCH
Confidence 66777766543 13344544
No 37
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=88.35 E-value=1.2 Score=43.26 Aligned_cols=70 Identities=23% Similarity=0.275 Sum_probs=46.1
Q ss_pred ccHHHhcccceeEEecCC-CCCCchhHHHHHHhCceeEEeeccccCCCCCCCCCCceEEEEcCCChhcHHHHHhcC
Q 048016 270 TTYYEDMQRAVFCLCPLG-WAPWSPRLVEAVIFGCIPVIIADDIVLPFADAIPWEEIGVFIDEKDVPNLDAILTAI 344 (416)
Q Consensus 270 ~~y~~~~~~S~FCl~p~G-~~~~s~Rl~dal~~GCIPVii~d~~~lPf~~~idw~~fsv~v~~~~~~~l~~~L~~i 344 (416)
.+..+.++.+.+++.|.- ..+.+..++|||.+|+ |||.+|.--. .++++=..-.+.++. ..++.+.|+.+
T Consensus 235 ~~~~~~~~~~d~~v~ps~~~E~~~~~~lEAma~G~-PvI~~~~~~~--~e~i~~~~~g~l~~~--~~~l~~~l~~l 305 (335)
T cd03802 235 AEKAELLGNARALLFPILWEEPFGLVMIEAMACGT-PVIAFRRGAV--PEVVEDGVTGFLVDS--VEELAAAVARA 305 (335)
T ss_pred HHHHHHHHhCcEEEeCCcccCCcchHHHHHHhcCC-CEEEeCCCCc--hhheeCCCcEEEeCC--HHHHHHHHHHH
Confidence 345678999999999975 3567788999999997 9999875322 243332222334443 55555555544
No 38
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=87.89 E-value=0.67 Score=46.46 Aligned_cols=84 Identities=14% Similarity=0.080 Sum_probs=52.8
Q ss_pred ccHHHhcccceeEEecCCCCCCchhHHHHHHhCceeEEeeccccCCCCCCCCCCceEEEEcCCChhcHHHHHhcC--ChH
Q 048016 270 TTYYEDMQRAVFCLCPLGWAPWSPRLVEAVIFGCIPVIIADDIVLPFADAIPWEEIGVFIDEKDVPNLDAILTAI--PTE 347 (416)
Q Consensus 270 ~~y~~~~~~S~FCl~p~G~~~~s~Rl~dal~~GCIPVii~d~~~lPf~~~idw~~fsv~v~~~~~~~l~~~L~~i--~~~ 347 (416)
.+..+.++.+.+++.|....+.+.-++|||.+| +|||.+|.-- + .+.+.=..-.+.++. +..++.+.+..+ .++
T Consensus 291 ~~~~~~l~~ad~~l~~s~~E~~g~~~lEAma~G-~PvI~s~~~~-~-~e~i~~~~~g~~~~~-~~~~~a~~i~~l~~~~~ 366 (392)
T cd03805 291 SQKELLLSSARALLYTPSNEHFGIVPLEAMYAG-KPVIACNSGG-P-LETVVDGETGFLCEP-TPEEFAEAMLKLANDPD 366 (392)
T ss_pred HHHHHHHhhCeEEEECCCcCCCCchHHHHHHcC-CCEEEECCCC-c-HHHhccCCceEEeCC-CHHHHHHHHHHHHhChH
Confidence 345678899999999988777788899999999 6777776421 1 233322233444554 555554444332 244
Q ss_pred HHHHHHHHhc
Q 048016 348 VILRKQRLLA 357 (416)
Q Consensus 348 ~~~~mq~~l~ 357 (416)
...+|+++..
T Consensus 367 ~~~~~~~~a~ 376 (392)
T cd03805 367 LADRMGAAGR 376 (392)
T ss_pred HHHHHHHHHH
Confidence 5677766544
No 39
>cd03813 GT1_like_3 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=87.44 E-value=1.4 Score=46.35 Aligned_cols=86 Identities=14% Similarity=0.025 Sum_probs=58.7
Q ss_pred cccHHHhcccceeEEecCCCCCCchhHHHHHHhCceeEEeeccccCCCCCCCCC------CceEEEEcCCChhcHHHHHh
Q 048016 269 PTTYYEDMQRAVFCLCPLGWAPWSPRLVEAVIFGCIPVIIADDIVLPFADAIPW------EEIGVFIDEKDVPNLDAILT 342 (416)
Q Consensus 269 ~~~y~~~~~~S~FCl~p~G~~~~s~Rl~dal~~GCIPVii~d~~~lPf~~~idw------~~fsv~v~~~~~~~l~~~L~ 342 (416)
..+..+.|..+..++.|.-..+...-++|||.+|| |||.+|.- ...++++= ....+.++..+..++.+.+.
T Consensus 361 ~~~v~~~l~~aDv~vlpS~~Eg~p~~vlEAma~G~-PVVatd~g--~~~elv~~~~~~~~g~~G~lv~~~d~~~la~ai~ 437 (475)
T cd03813 361 FQNVKEYLPKLDVLVLTSISEGQPLVILEAMAAGI-PVVATDVG--SCRELIEGADDEALGPAGEVVPPADPEALARAIL 437 (475)
T ss_pred CccHHHHHHhCCEEEeCchhhcCChHHHHHHHcCC-CEEECCCC--ChHHHhcCCcccccCCceEEECCCCHHHHHHHHH
Confidence 34567788889999988766667888999999999 88887642 11222211 23677888888777666655
Q ss_pred cC--ChHHHHHHHHHhc
Q 048016 343 AI--PTEVILRKQRLLA 357 (416)
Q Consensus 343 ~i--~~~~~~~mq~~l~ 357 (416)
.+ +++...+|.++..
T Consensus 438 ~ll~~~~~~~~~~~~a~ 454 (475)
T cd03813 438 RLLKDPELRRAMGEAGR 454 (475)
T ss_pred HHhcCHHHHHHHHHHHH
Confidence 43 4566777776654
No 40
>TIGR03087 stp1 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=87.20 E-value=2 Score=43.68 Aligned_cols=91 Identities=12% Similarity=0.131 Sum_probs=54.7
Q ss_pred cHHHhcccceeEEecCC-CCCCchhHHHHHHhCceeEEeeccccCCCCCCCCCCceEEEEcCCChhcHHHHHhcC--ChH
Q 048016 271 TYYEDMQRAVFCLCPLG-WAPWSPRLVEAVIFGCIPVIIADDIVLPFADAIPWEEIGVFIDEKDVPNLDAILTAI--PTE 347 (416)
Q Consensus 271 ~y~~~~~~S~FCl~p~G-~~~~s~Rl~dal~~GCIPVii~d~~~lPf~~~idw~~fsv~v~~~~~~~l~~~L~~i--~~~ 347 (416)
+....++.+..+++|.= .++....+.|||.+|| |||.++.- .+.+..=..-.+.++ .+..++.+.+..+ +++
T Consensus 290 ~~~~~~~~adv~v~Ps~~~eG~~~~~lEAma~G~-PVV~t~~~---~~~i~~~~~~g~lv~-~~~~~la~ai~~ll~~~~ 364 (397)
T TIGR03087 290 DVRPYLAHAAVAVAPLRIARGIQNKVLEAMAMAK-PVVASPEA---AEGIDALPGAELLVA-ADPADFAAAILALLANPA 364 (397)
T ss_pred CHHHHHHhCCEEEecccccCCcccHHHHHHHcCC-CEEecCcc---cccccccCCcceEeC-CCHHHHHHHHHHHHcCHH
Confidence 45677888999998852 1345667999999998 99988742 122111123345565 5666555554432 345
Q ss_pred HHHHHHHHhcccccccceee
Q 048016 348 VILRKQRLLANPSMKQAMLF 367 (416)
Q Consensus 348 ~~~~mq~~l~~~~~~~~f~y 367 (416)
...+|.++..+ .+...|.|
T Consensus 365 ~~~~~~~~ar~-~v~~~fsw 383 (397)
T TIGR03087 365 EREELGQAARR-RVLQHYHW 383 (397)
T ss_pred HHHHHHHHHHH-HHHHhCCH
Confidence 56677666543 23445655
No 41
>TIGR02472 sucr_P_syn_N sucrose-phosphate synthase, putative, glycosyltransferase domain. This family consists of the N-terminal regions, or in some cases the entirety, of bacterial proteins closely related to plant sucrose-phosphate synthases (SPS). The C-terminal domain (TIGR02471), found with most members of this family, resembles both bona fide plant sucrose-phosphate phosphatases (SPP) and the SPP-like domain of plant SPS. At least two members of this family lack the SPP-like domain, which may have binding or regulatory rather than enzymatic activity by analogy to plant SPS. This enzyme produces sucrose 6-phosphate and UDP from UDP-glucose and D-fructose 6-phosphate, and may be encoded near the gene for fructokinase.
Probab=86.60 E-value=0.83 Score=47.45 Aligned_cols=93 Identities=19% Similarity=0.177 Sum_probs=57.1
Q ss_pred cHHHhcccc----eeEEecCCCCCCchhHHHHHHhCceeEEeeccccCCCCCCCCCCceEEEEcCCChhcHHHHHhcC--
Q 048016 271 TYYEDMQRA----VFCLCPLGWAPWSPRLVEAVIFGCIPVIIADDIVLPFADAIPWEEIGVFIDEKDVPNLDAILTAI-- 344 (416)
Q Consensus 271 ~y~~~~~~S----~FCl~p~G~~~~s~Rl~dal~~GCIPVii~d~~~lPf~~~idw~~fsv~v~~~~~~~l~~~L~~i-- 344 (416)
+..+.++.+ ..++.|.-..+.+.-+.|||.+|| |||.++.= ...++++=..-.+.++..|...+-+.+..+
T Consensus 329 ~~~~~~~~a~~~~Dv~v~pS~~E~fg~~~lEAma~G~-PvV~s~~g--g~~eiv~~~~~G~lv~~~d~~~la~~i~~ll~ 405 (439)
T TIGR02472 329 DVPELYRLAARSRGIFVNPALTEPFGLTLLEAAACGL-PIVATDDG--GPRDIIANCRNGLLVDVLDLEAIASALEDALS 405 (439)
T ss_pred HHHHHHHHHhhcCCEEecccccCCcccHHHHHHHhCC-CEEEeCCC--CcHHHhcCCCcEEEeCCCCHHHHHHHHHHHHh
Confidence 344445544 445556656677888999999999 99998742 233444324456778888877766655443
Q ss_pred ChHHHHHHHHHhcccccccceee
Q 048016 345 PTEVILRKQRLLANPSMKQAMLF 367 (416)
Q Consensus 345 ~~~~~~~mq~~l~~~~~~~~f~y 367 (416)
+++...+|.++..+ .+..+|.|
T Consensus 406 ~~~~~~~~~~~a~~-~~~~~fsw 427 (439)
T TIGR02472 406 DSSQWQLWSRNGIE-GVRRHYSW 427 (439)
T ss_pred CHHHHHHHHHHHHH-HHHHhCCH
Confidence 34555556555432 23455655
No 42
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=86.33 E-value=1.6 Score=45.69 Aligned_cols=91 Identities=20% Similarity=0.211 Sum_probs=59.4
Q ss_pred cHHHhcccceeEEecCCCCCCchhHHHHHHhCceeEEeeccccCCCCCCC-CCC-----ceEEEEcCCChhcHHHHHhcC
Q 048016 271 TYYEDMQRAVFCLCPLGWAPWSPRLVEAVIFGCIPVIIADDIVLPFADAI-PWE-----EIGVFIDEKDVPNLDAILTAI 344 (416)
Q Consensus 271 ~y~~~~~~S~FCl~p~G~~~~s~Rl~dal~~GCIPVii~d~~~lPf~~~i-dw~-----~fsv~v~~~~~~~l~~~L~~i 344 (416)
...+.++.+.++++|.-+.+.+.-..|||.+||.||+ ++.- ...+.+ |.+ .-.+.+++.+..++.+.|..+
T Consensus 358 ~~~~~~~~aDv~l~pS~~E~~gl~~lEAma~G~pvI~-s~~g--g~~e~v~~~~~~~~~~~G~l~~~~d~~~la~~i~~~ 434 (473)
T TIGR02095 358 LAHLIYAGADFILMPSRFEPCGLTQLYAMRYGTVPIV-RRTG--GLADTVVDGDPEAESGTGFLFEEYDPGALLAALSRA 434 (473)
T ss_pred HHHHHHHhCCEEEeCCCcCCcHHHHHHHHHCCCCeEE-ccCC--CccceEecCCCCCCCCceEEeCCCCHHHHHHHHHHH
Confidence 3567889999999999888889999999999997665 4321 222322 221 456777887777665554432
Q ss_pred ------ChHHHHHHHHHhcccccccceeec
Q 048016 345 ------PTEVILRKQRLLANPSMKQAMLFP 368 (416)
Q Consensus 345 ------~~~~~~~mq~~l~~~~~~~~f~y~ 368 (416)
.++...+|.++.. ...|.|.
T Consensus 435 l~~~~~~~~~~~~~~~~~~----~~~fsw~ 460 (473)
T TIGR02095 435 LRLYRQDPSLWEALQKNAM----SQDFSWD 460 (473)
T ss_pred HHHHhcCHHHHHHHHHHHh----ccCCCcH
Confidence 4555666766543 2455553
No 43
>cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases. wbaZ in Salmonella enterica has been shown to possess the mannosyl transferase activity. The members of this family are found in certain bacteria and Archaea.
Probab=86.10 E-value=1.6 Score=43.17 Aligned_cols=70 Identities=23% Similarity=0.213 Sum_probs=48.4
Q ss_pred ccHHHhcccceeEEecCCCCCCchhHHHHHHhCceeEEeeccccCCCCCCCCCCceEEEEcCCChhcHHHHHhc
Q 048016 270 TTYYEDMQRAVFCLCPLGWAPWSPRLVEAVIFGCIPVIIADDIVLPFADAIPWEEIGVFIDEKDVPNLDAILTA 343 (416)
Q Consensus 270 ~~y~~~~~~S~FCl~p~G~~~~s~Rl~dal~~GCIPVii~d~~~lPf~~~idw~~fsv~v~~~~~~~l~~~L~~ 343 (416)
.+..+.++.+..+++|.- .+.+..++|||.+|| |||.++.-- ..+++.=.+..+.++..+...+.+.|..
T Consensus 253 ~~~~~~~~~ad~~v~ps~-e~~g~~~~Eama~G~-Pvi~~~~~~--~~e~i~~~~~G~~~~~~~~~~la~~i~~ 322 (351)
T cd03804 253 EELRDLYARARAFLFPAE-EDFGIVPVEAMASGT-PVIAYGKGG--ALETVIDGVTGILFEEQTVESLAAAVER 322 (351)
T ss_pred HHHHHHHHhCCEEEECCc-CCCCchHHHHHHcCC-CEEEeCCCC--CcceeeCCCCEEEeCCCCHHHHHHHHHH
Confidence 457788999999999866 666777899999998 999887422 2233321345677777776665555443
No 44
>PRK00654 glgA glycogen synthase; Provisional
Probab=85.56 E-value=2.1 Score=44.83 Aligned_cols=90 Identities=19% Similarity=0.248 Sum_probs=58.9
Q ss_pred HHHhcccceeEEecCCCCCCchhHHHHHHhCceeEEeeccccCCCCCC-CCCC-----ceEEEEcCCChhcHHHHHhcC-
Q 048016 272 YYEDMQRAVFCLCPLGWAPWSPRLVEAVIFGCIPVIIADDIVLPFADA-IPWE-----EIGVFIDEKDVPNLDAILTAI- 344 (416)
Q Consensus 272 y~~~~~~S~FCl~p~G~~~~s~Rl~dal~~GCIPVii~d~~~lPf~~~-idw~-----~fsv~v~~~~~~~l~~~L~~i- 344 (416)
....++.|.+++.|.=..+++.-..|||.+||+||+-.-+ -..+. .|.. .-.+.++..+...+.+.|..+
T Consensus 350 ~~~~~~~aDv~v~PS~~E~~gl~~lEAma~G~p~V~~~~g---G~~e~v~~~~~~~~~~~G~lv~~~d~~~la~~i~~~l 426 (466)
T PRK00654 350 AHRIYAGADMFLMPSRFEPCGLTQLYALRYGTLPIVRRTG---GLADTVIDYNPEDGEATGFVFDDFNAEDLLRALRRAL 426 (466)
T ss_pred HHHHHhhCCEEEeCCCCCCchHHHHHHHHCCCCEEEeCCC---CccceeecCCCCCCCCceEEeCCCCHHHHHHHHHHHH
Confidence 4567899999999988888999999999999988774321 11222 2321 446778888877666555432
Q ss_pred ----ChHHHHHHHHHhcccccccceeec
Q 048016 345 ----PTEVILRKQRLLANPSMKQAMLFP 368 (416)
Q Consensus 345 ----~~~~~~~mq~~l~~~~~~~~f~y~ 368 (416)
.++...+|.++.. ...|.|+
T Consensus 427 ~~~~~~~~~~~~~~~~~----~~~fsw~ 450 (466)
T PRK00654 427 ELYRQPPLWRALQRQAM----AQDFSWD 450 (466)
T ss_pred HHhcCHHHHHHHHHHHh----ccCCChH
Confidence 3445666665543 2455553
No 45
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=85.40 E-value=1.4 Score=43.02 Aligned_cols=85 Identities=15% Similarity=0.098 Sum_probs=56.4
Q ss_pred ccHHHhcccceeEEecCCC------CCCchhHHHHHHhCceeEEeeccccCCCCCCCCCCceEEEEcCCChhcHHHHHhc
Q 048016 270 TTYYEDMQRAVFCLCPLGW------APWSPRLVEAVIFGCIPVIIADDIVLPFADAIPWEEIGVFIDEKDVPNLDAILTA 343 (416)
Q Consensus 270 ~~y~~~~~~S~FCl~p~G~------~~~s~Rl~dal~~GCIPVii~d~~~lPf~~~idw~~fsv~v~~~~~~~l~~~L~~ 343 (416)
.+..+.++++.++++|... .+.+..++|||.+||-.|. ++. ..+.+.+.=..-...+++.+..++.+.|..
T Consensus 247 ~~l~~~~~~adi~l~~s~~~~~~~~e~~~~~~~Ea~a~G~Pvi~-~~~--~~~~~~i~~~~~g~~~~~~~~~~l~~~i~~ 323 (355)
T cd03799 247 EEVRELLRAADLFVLPSVTAADGDREGLPVVLMEAMAMGLPVIS-TDV--SGIPELVEDGETGLLVPPGDPEALADAIER 323 (355)
T ss_pred HHHHHHHHhCCEEEecceecCCCCccCccHHHHHHHHcCCCEEe-cCC--CCcchhhhCCCceEEeCCCCHHHHHHHHHH
Confidence 4677889999999998765 5678899999999986654 443 123344432334667777777666655554
Q ss_pred C--ChHHHHHHHHHhc
Q 048016 344 I--PTEVILRKQRLLA 357 (416)
Q Consensus 344 i--~~~~~~~mq~~l~ 357 (416)
+ .+++..+|.++..
T Consensus 324 ~~~~~~~~~~~~~~a~ 339 (355)
T cd03799 324 LLDDPELRREMGEAGR 339 (355)
T ss_pred HHhCHHHHHHHHHHHH
Confidence 3 3455666666554
No 46
>PRK14099 glycogen synthase; Provisional
Probab=85.13 E-value=2.3 Score=45.11 Aligned_cols=93 Identities=19% Similarity=0.161 Sum_probs=60.4
Q ss_pred ccHHHhc-ccceeEEecCCCCCCchhHHHHHHhCceeEEeeccccCCCCCCCCCC--------ceEEEEcCCChhcHHHH
Q 048016 270 TTYYEDM-QRAVFCLCPLGWAPWSPRLVEAVIFGCIPVIIADDIVLPFADAIPWE--------EIGVFIDEKDVPNLDAI 340 (416)
Q Consensus 270 ~~y~~~~-~~S~FCl~p~G~~~~s~Rl~dal~~GCIPVii~d~~~lPf~~~idw~--------~fsv~v~~~~~~~l~~~ 340 (416)
.+....+ +.|.+.+.|.=+.+.+.-..|||.+||+||+ ++.=-++ +-+.|.+ .-.+.++..+...|.+.
T Consensus 360 ~~l~~~~~a~aDifv~PS~~E~fGl~~lEAma~G~ppVv-s~~GGl~-d~V~~~~~~~~~~~~~~G~l~~~~d~~~La~a 437 (485)
T PRK14099 360 EALAHLIQAGADALLVPSRFEPCGLTQLCALRYGAVPVV-ARVGGLA-DTVVDANEMAIATGVATGVQFSPVTADALAAA 437 (485)
T ss_pred HHHHHHHHhcCCEEEECCccCCCcHHHHHHHHCCCCcEE-eCCCCcc-ceeecccccccccCCCceEEeCCCCHHHHHHH
Confidence 3445555 4688889998888999999999999999988 4321111 1123432 34677888887776665
Q ss_pred Hhc----C-ChHHHHHHHHHhcccccccceeec
Q 048016 341 LTA----I-PTEVILRKQRLLANPSMKQAMLFP 368 (416)
Q Consensus 341 L~~----i-~~~~~~~mq~~l~~~~~~~~f~y~ 368 (416)
|.. + .++...+|+++.. ...|.|.
T Consensus 438 i~~a~~l~~d~~~~~~l~~~~~----~~~fSw~ 466 (485)
T PRK14099 438 LRKTAALFADPVAWRRLQRNGM----TTDVSWR 466 (485)
T ss_pred HHHHHHHhcCHHHHHHHHHHhh----hhcCChH
Confidence 542 2 3566677776643 3456664
No 47
>cd03806 GT1_ALG11_like This family is most closely related to the GT1 family of glycosyltransferases. ALG11 in yeast is involved in adding the final 1,2-linked Man to the Man5GlcNAc2-PP-Dol synthesized on the cytosolic face of the ER. The deletion analysis of ALG11 was shown to block the early steps of core biosynthesis that takes place on the cytoplasmic face of the ER and lead to a defect in the assembly of lipid-linked oligosaccharides.
Probab=84.70 E-value=1.5 Score=45.34 Aligned_cols=50 Identities=20% Similarity=0.220 Sum_probs=38.3
Q ss_pred cccHHHhcccceeEEecCCCCCCchhHHHHHHhCceeEEeeccccCCCCCCC
Q 048016 269 PTTYYEDMQRAVFCLCPLGWAPWSPRLVEAVIFGCIPVIIADDIVLPFADAI 320 (416)
Q Consensus 269 ~~~y~~~~~~S~FCl~p~G~~~~s~Rl~dal~~GCIPVii~d~~~lPf~~~i 320 (416)
..+..+.|+.|..++.|.=+.+.+.-++|||.+||.||. ++. --|.++++
T Consensus 315 ~~~l~~~l~~adv~v~~s~~E~Fgi~~lEAMa~G~pvIa-~~~-ggp~~~iv 364 (419)
T cd03806 315 FEELLEELSTASIGLHTMWNEHFGIGVVEYMAAGLIPLA-HAS-GGPLLDIV 364 (419)
T ss_pred HHHHHHHHHhCeEEEECCccCCcccHHHHHHHcCCcEEE-EcC-CCCchhee
Confidence 356788999999999988777889999999999997765 442 13555555
No 48
>cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltra
Probab=84.68 E-value=2.2 Score=42.51 Aligned_cols=86 Identities=21% Similarity=0.218 Sum_probs=57.3
Q ss_pred ccHHHhcccceeEEecCCCCCCchhHHHHHHhCceeEEeeccccCCCCCCCCCCceEEEEcCCChhcHHHHHhcC--ChH
Q 048016 270 TTYYEDMQRAVFCLCPLGWAPWSPRLVEAVIFGCIPVIIADDIVLPFADAIPWEEIGVFIDEKDVPNLDAILTAI--PTE 347 (416)
Q Consensus 270 ~~y~~~~~~S~FCl~p~G~~~~s~Rl~dal~~GCIPVii~d~~~lPf~~~idw~~fsv~v~~~~~~~l~~~L~~i--~~~ 347 (416)
.+..+.++++..++.|.-.++.+..+.|||.+|| |||..+.-.-| .+.+.=..-.+.++..+..++.+.|..+ .++
T Consensus 270 ~~~~~~~~~ad~~v~~S~~Eg~~~~~lEAma~G~-PvI~~~~~~g~-~~~v~~~~~G~lv~~~d~~~la~~i~~ll~~~~ 347 (372)
T cd04949 270 RDLDEVYQKAQLSLLTSQSEGFGLSLMEALSHGL-PVISYDVNYGP-SEIIEDGENGYLVPKGDIEALAEAIIELLNDPK 347 (372)
T ss_pred CCHHHHHhhhhEEEecccccccChHHHHHHhCCC-CEEEecCCCCc-HHHcccCCCceEeCCCcHHHHHHHHHHHHcCHH
Confidence 4566788999999999866678889999999999 77776521111 1222223456677777776666555433 345
Q ss_pred HHHHHHHHhc
Q 048016 348 VILRKQRLLA 357 (416)
Q Consensus 348 ~~~~mq~~l~ 357 (416)
...+|+++..
T Consensus 348 ~~~~~~~~a~ 357 (372)
T cd04949 348 LLQKFSEAAY 357 (372)
T ss_pred HHHHHHHHHH
Confidence 6777776654
No 49
>PRK14098 glycogen synthase; Provisional
Probab=84.10 E-value=2.7 Score=44.62 Aligned_cols=91 Identities=16% Similarity=0.101 Sum_probs=59.7
Q ss_pred cHHHhcccceeEEecCCCCCCchhHHHHHHhCceeEEeeccccCCCCCCC-CC---CceEEEEcCCChhcHHHHHhcC--
Q 048016 271 TYYEDMQRAVFCLCPLGWAPWSPRLVEAVIFGCIPVIIADDIVLPFADAI-PW---EEIGVFIDEKDVPNLDAILTAI-- 344 (416)
Q Consensus 271 ~y~~~~~~S~FCl~p~G~~~~s~Rl~dal~~GCIPVii~d~~~lPf~~~i-dw---~~fsv~v~~~~~~~l~~~L~~i-- 344 (416)
...+.++.|.+++.|.-..+.+.-..|||++||+||+...+- + .+.+ |+ ..-.+.+++.+...+.+.|..+
T Consensus 374 ~~~~~~a~aDi~l~PS~~E~~Gl~~lEAma~G~ppVv~~~GG-l--~d~v~~~~~~~~~G~l~~~~d~~~la~ai~~~l~ 450 (489)
T PRK14098 374 FFHLAIAGLDMLLMPGKIESCGMLQMFAMSYGTIPVAYAGGG-I--VETIEEVSEDKGSGFIFHDYTPEALVAKLGEALA 450 (489)
T ss_pred HHHHHHHhCCEEEeCCCCCCchHHHHHHHhCCCCeEEecCCC-C--ceeeecCCCCCCceeEeCCCCHHHHHHHHHHHHH
Confidence 356788999999999888889999999999999999865321 1 1111 21 2345677887877666555431
Q ss_pred ---ChHHHHHHHHHhcccccccceeec
Q 048016 345 ---PTEVILRKQRLLANPSMKQAMLFP 368 (416)
Q Consensus 345 ---~~~~~~~mq~~l~~~~~~~~f~y~ 368 (416)
.++...+|+++- +...|.|+
T Consensus 451 ~~~~~~~~~~~~~~~----~~~~fsw~ 473 (489)
T PRK14098 451 LYHDEERWEELVLEA----MERDFSWK 473 (489)
T ss_pred HHcCHHHHHHHHHHH----hcCCCChH
Confidence 345566665543 23456553
No 50
>PF00919 UPF0004: Uncharacterized protein family UPF0004; InterPro: IPR013848 The methylthiotransferase (MTTase) or miaB-like family is named after the (dimethylallyl)adenosine tRNA MTTase miaB protein, which catalyses a C-H to C-S bond conversion in the methylthiolation of tRNA. A related bacterial enzyme rimO performs a similar methylthiolation, but on a protein substrate. RimO acts on the ribosomal protein S12 and forms a separate MTTase subfamily. The miaB-subfamily includes mammalian CDK5 regulatory subunit-associated proteins and similar proteins in other eukaryotes. Two other subfamilies, yqeV and CDKAL1, are named after a Bacillus subtilis and a human protein, respectively. While yqeV-like proteins are found in bacteria, CDKAL1 subfamily members occur in eukaryotes and in archaebacteria. The likely MTTases from these 4 subfamilies contain an N-terminal MTTase domain, a central radical generating fold and a C-terminal TRAM domain (see PDOC50926 from PROSITEDOC). The core forms a radical SAM fold (or AdoMet radical), containing a cysteine motif CxxxCxxC that binds a [4Fe-4S] cluster [, , ]. A reducing equivalent from the [4Fe-4S]+ cluster is used to cleave S-adenosylmethionine (SAM) to generate methionine and a 5'-deoxyadenosyl radical. The latter is thought to produce a reactive substrate radical that is amenable to sulphur insertion [, ]. The N-terminal MTTase domain contains 3 cysteines that bind a second [4Fe-4S] cluster, in addition to the radical-generating [4Fe-4S] cluster, which could be involved in the thiolation reaction. The C-terminal TRAM domain is not shared with other radical SAM proteins outside the MTTase family. The TRAM domain can bind to RNA substrate and seems to be important for substrate recognition. The tertiary structure of the central radical SAM fold has six beta/alpha motifs resembling a three-quarter TIM barrel core (see PDOC00155 from PROSITEDOC) []. The N-terminal MTTase domain might form an additional [beta/alpha]2 TIM barrel unit []. ; GO: 0003824 catalytic activity, 0051539 4 iron, 4 sulfur cluster binding, 0009451 RNA modification
Probab=80.90 E-value=2.4 Score=35.11 Aligned_cols=40 Identities=25% Similarity=0.367 Sum_probs=28.3
Q ss_pred ccccCcchHHHHHHHHHhcCC-CcCCCcCCCcEEEEecccccccC
Q 048016 71 RCLTHMFAAEIFMHRFLLSSP-VRTLNPEEADWFYTPVYTTCDLT 114 (416)
Q Consensus 71 ~~~~~~y~~E~~~~~~L~~S~-~rT~dP~eAdlFyVP~~~~~~~~ 114 (416)
.|...++.+|.+.-. |.+.. -.|++|++||+++|= +|.+.
T Consensus 8 GC~~N~~Dse~i~~~-l~~~G~~~~~~~e~AD~iiiN---TC~V~ 48 (98)
T PF00919_consen 8 GCQMNQYDSERIASI-LQAAGYEIVDDPEEADVIIIN---TCTVR 48 (98)
T ss_pred CCcccHHHHHHHHHH-HHhcCCeeecccccCCEEEEE---cCCCC
Confidence 366678888876644 54444 589999999999763 56553
No 51
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=80.32 E-value=5 Score=38.65 Aligned_cols=84 Identities=19% Similarity=0.154 Sum_probs=52.9
Q ss_pred ccHHHhcccceeEEecCCCCCCchhHHHHHHhCceeEEeeccccCCCCCCCCCCceEEEEcCCChhcHHHHHhcC--ChH
Q 048016 270 TTYYEDMQRAVFCLCPLGWAPWSPRLVEAVIFGCIPVIIADDIVLPFADAIPWEEIGVFIDEKDVPNLDAILTAI--PTE 347 (416)
Q Consensus 270 ~~y~~~~~~S~FCl~p~G~~~~s~Rl~dal~~GCIPVii~d~~~lPf~~~idw~~fsv~v~~~~~~~l~~~L~~i--~~~ 347 (416)
.+..+.++.|.+.++|....+.+..++|||.+|+ |||.++.- .+.+.+.=..-.+.++..+. ++.+.+..+ .++
T Consensus 270 ~~~~~~~~~ad~~l~~s~~e~~~~~~~Ea~~~g~-PvI~~~~~--~~~~~i~~~~~g~~~~~~~~-~~~~~i~~l~~~~~ 345 (374)
T cd03817 270 EELPDYYKAADLFVFASTTETQGLVLLEAMAAGL-PVVAVDAP--GLPDLVADGENGFLFPPGDE-ALAEALLRLLQDPE 345 (374)
T ss_pred HHHHHHHHHcCEEEecccccCcChHHHHHHHcCC-cEEEeCCC--ChhhheecCceeEEeCCCCH-HHHHHHHHHHhChH
Confidence 4577889999999999877778889999999986 55555532 23343332345566666553 444333332 234
Q ss_pred HHHHHHHHhc
Q 048016 348 VILRKQRLLA 357 (416)
Q Consensus 348 ~~~~mq~~l~ 357 (416)
..++|+++..
T Consensus 346 ~~~~~~~~~~ 355 (374)
T cd03817 346 LRRRLSKNAE 355 (374)
T ss_pred HHHHHHHHHH
Confidence 4466666554
No 52
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=79.97 E-value=11 Score=35.60 Aligned_cols=65 Identities=18% Similarity=0.217 Sum_probs=46.1
Q ss_pred ccHHHhcccceeEEecCCCCCCchhHHHHHHhCceeEEeeccccCCCCCCCCCCceEEEEcCCChhcH
Q 048016 270 TTYYEDMQRAVFCLCPLGWAPWSPRLVEAVIFGCIPVIIADDIVLPFADAIPWEEIGVFIDEKDVPNL 337 (416)
Q Consensus 270 ~~y~~~~~~S~FCl~p~G~~~~s~Rl~dal~~GCIPVii~d~~~lPf~~~idw~~fsv~v~~~~~~~l 337 (416)
.+..+.++.|.++++|.-.++.+..++|||.+||. ||.+|.- ...+++.=....+.++.++...+
T Consensus 255 ~~~~~~~~~~d~~i~ps~~e~~~~~~~Ea~~~G~P-vI~~~~~--~~~e~i~~~~~g~~~~~~~~~~~ 319 (353)
T cd03811 255 SNPYPYLKAADLFVLSSRYEGFPNVLLEAMALGTP-VVATDCP--GPREILEDGENGLLVPVGDEAAL 319 (353)
T ss_pred CCHHHHHHhCCEEEeCcccCCCCcHHHHHHHhCCC-EEEcCCC--ChHHHhcCCCceEEECCCCHHHH
Confidence 34567899999999998777788899999999986 4555432 22333433455677788777665
No 53
>PHA01630 putative group 1 glycosyl transferase
Probab=79.19 E-value=3.2 Score=41.79 Aligned_cols=40 Identities=15% Similarity=0.326 Sum_probs=32.5
Q ss_pred ccHHHhcccceeEEecCCCCCCchhHHHHHHhCceeEEeec
Q 048016 270 TTYYEDMQRAVFCLCPLGWAPWSPRLVEAVIFGCIPVIIAD 310 (416)
Q Consensus 270 ~~y~~~~~~S~FCl~p~G~~~~s~Rl~dal~~GCIPVii~d 310 (416)
.+..+.++.+..++.|.-..+.+.-+.|||.+|| |||.+|
T Consensus 201 ~~l~~~y~~aDv~v~pS~~E~fgl~~lEAMA~G~-PVIas~ 240 (331)
T PHA01630 201 DDIYSLFAGCDILFYPVRGGAFEIPVIEALALGL-DVVVTE 240 (331)
T ss_pred HHHHHHHHhCCEEEECCccccCChHHHHHHHcCC-CEEEeC
Confidence 4556788999999999777777888999999998 566665
No 54
>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms.
Probab=78.91 E-value=4.4 Score=42.16 Aligned_cols=84 Identities=23% Similarity=0.259 Sum_probs=55.5
Q ss_pred cHHHhcccceeEEecCCCCCCchhHHHHHHhCceeEEeeccccCCCCCC-CCCC-----ceEEEEcCCChhcHHHHHhcC
Q 048016 271 TYYEDMQRAVFCLCPLGWAPWSPRLVEAVIFGCIPVIIADDIVLPFADA-IPWE-----EIGVFIDEKDVPNLDAILTAI 344 (416)
Q Consensus 271 ~y~~~~~~S~FCl~p~G~~~~s~Rl~dal~~GCIPVii~d~~~lPf~~~-idw~-----~fsv~v~~~~~~~l~~~L~~i 344 (416)
...+.++.+.+.+.|.-+.+++....|||.+||.||.-... ...+. .|.. .-.+.++..+...+.+.|..+
T Consensus 363 ~~~~~~~~aDv~l~pS~~E~~gl~~lEAma~G~pvI~~~~g---g~~e~v~~~~~~~~~~~G~~~~~~~~~~l~~~i~~~ 439 (476)
T cd03791 363 LAHLIYAGADFFLMPSRFEPCGLTQMYAMRYGTVPIVRATG---GLADTVIDYNEDTGEGTGFVFEGYNADALLAALRRA 439 (476)
T ss_pred HHHHHHHhCCEEECCCCCCCCcHHHHHHhhCCCCCEECcCC---CccceEeCCcCCCCCCCeEEeCCCCHHHHHHHHHHH
Confidence 34567889999999988888899999999999998764322 11222 2332 146677777776665555432
Q ss_pred -----ChHHHHHHHHHhc
Q 048016 345 -----PTEVILRKQRLLA 357 (416)
Q Consensus 345 -----~~~~~~~mq~~l~ 357 (416)
.++...+|.++..
T Consensus 440 l~~~~~~~~~~~~~~~~~ 457 (476)
T cd03791 440 LALYRDPEAWRKLQRNAM 457 (476)
T ss_pred HHHHcCHHHHHHHHHHHh
Confidence 2466666666553
No 55
>cd04946 GT1_AmsK_like This family is most closely related to the GT1 family of glycosyltransferases. AmsK is involved in the biosynthesis of amylovoran, which functions as a virulence factor. It functions as a glycosyl transferase which transfers galactose from UDP-galactose to a lipid-linked amylovoran-subunit precursor. The members of this family are found mainly in bacteria and Archaea.
Probab=78.88 E-value=3.1 Score=42.82 Aligned_cols=85 Identities=14% Similarity=0.113 Sum_probs=51.5
Q ss_pred cHHHhcccc--eeEEecCCCCCCchhHHHHHHhCceeEEeeccccCCCCCCCCCCceEEEEcC-CChhcHHHHHhcC--C
Q 048016 271 TYYEDMQRA--VFCLCPLGWAPWSPRLVEAVIFGCIPVIIADDIVLPFADAIPWEEIGVFIDE-KDVPNLDAILTAI--P 345 (416)
Q Consensus 271 ~y~~~~~~S--~FCl~p~G~~~~s~Rl~dal~~GCIPVii~d~~~lPf~~~idw~~fsv~v~~-~~~~~l~~~L~~i--~ 345 (416)
+..+.++.+ ...+.|.-..+.+..+.|||.+|+ |||.++.--. .++++=..-.+.++. .+..++.+.|..+ +
T Consensus 301 e~~~~~~~~~~~v~v~~S~~Eg~p~~llEAma~G~-PVIas~vgg~--~e~i~~~~~G~l~~~~~~~~~la~~I~~ll~~ 377 (407)
T cd04946 301 EVYKLYKENPVDVFVNLSESEGLPVSIMEAMSFGI-PVIATNVGGT--PEIVDNGGNGLLLSKDPTPNELVSSLSKFIDN 377 (407)
T ss_pred HHHHHHhhcCCCEEEeCCccccccHHHHHHHHcCC-CEEeCCCCCc--HHHhcCCCcEEEeCCCCCHHHHHHHHHHHHhC
Confidence 445566543 334446555667888999999995 9998874222 234432334555654 3555555555443 4
Q ss_pred hHHHHHHHHHhcc
Q 048016 346 TEVILRKQRLLAN 358 (416)
Q Consensus 346 ~~~~~~mq~~l~~ 358 (416)
+++..+|+++..+
T Consensus 378 ~~~~~~m~~~ar~ 390 (407)
T cd04946 378 EEEYQTMREKARE 390 (407)
T ss_pred HHHHHHHHHHHHH
Confidence 6778888876553
No 56
>PLN02949 transferase, transferring glycosyl groups
Probab=77.87 E-value=2.4 Score=44.82 Aligned_cols=86 Identities=14% Similarity=0.105 Sum_probs=52.7
Q ss_pred ccHHHhcccceeEEecCCCCCCchhHHHHHHhCceeEEeeccccCCCCCCC-CCC-ceEEEEcCCChhcHHHHHhcC---
Q 048016 270 TTYYEDMQRAVFCLCPLGWAPWSPRLVEAVIFGCIPVIIADDIVLPFADAI-PWE-EIGVFIDEKDVPNLDAILTAI--- 344 (416)
Q Consensus 270 ~~y~~~~~~S~FCl~p~G~~~~s~Rl~dal~~GCIPVii~d~~~lPf~~~i-dw~-~fsv~v~~~~~~~l~~~L~~i--- 344 (416)
.+..+.++++.+++.|.-+++.+.-+.|||.+||+||.-... =|-++++ +.. .-.-.+. .+..++-+.|..+
T Consensus 346 ~el~~ll~~a~~~v~~s~~E~FGivvlEAMA~G~PVIa~~~g--Gp~~eIV~~~~~g~tG~l~-~~~~~la~ai~~ll~~ 422 (463)
T PLN02949 346 RDLVRLLGGAVAGLHSMIDEHFGISVVEYMAAGAVPIAHNSA--GPKMDIVLDEDGQQTGFLA-TTVEEYADAILEVLRM 422 (463)
T ss_pred HHHHHHHHhCcEEEeCCccCCCChHHHHHHHcCCcEEEeCCC--CCcceeeecCCCCcccccC-CCHHHHHHHHHHHHhC
Confidence 456778899999998887788899999999999887775432 1322322 111 1111111 2555554444332
Q ss_pred ChHHHHHHHHHhcc
Q 048016 345 PTEVILRKQRLLAN 358 (416)
Q Consensus 345 ~~~~~~~mq~~l~~ 358 (416)
++++..+|+++..+
T Consensus 423 ~~~~r~~m~~~ar~ 436 (463)
T PLN02949 423 RETERLEIAAAARK 436 (463)
T ss_pred CHHHHHHHHHHHHH
Confidence 55667778777653
No 57
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=77.40 E-value=4.2 Score=39.62 Aligned_cols=93 Identities=15% Similarity=0.118 Sum_probs=59.5
Q ss_pred ccHHHhcccceeEEecCC--CCCCchhHHHHHHhCceeEEeeccccCCCCCCC-CCCceEEEEcCCChhcHHHHHhcC--
Q 048016 270 TTYYEDMQRAVFCLCPLG--WAPWSPRLVEAVIFGCIPVIIADDIVLPFADAI-PWEEIGVFIDEKDVPNLDAILTAI-- 344 (416)
Q Consensus 270 ~~y~~~~~~S~FCl~p~G--~~~~s~Rl~dal~~GCIPVii~d~~~lPf~~~i-dw~~fsv~v~~~~~~~l~~~L~~i-- 344 (416)
.++.+.++.+..+++|.- ..+.+..+.|||.+|+ |||.++.-..+ +.+ +.....+.++..+..++.+.+..+
T Consensus 255 ~~~~~~~~~ad~~i~ps~~~~e~~g~~~~Ea~~~g~-Pvi~~~~~~~~--~~i~~~~~~g~~~~~~d~~~~~~~i~~l~~ 331 (357)
T cd03795 255 EEKAALLAACDVFVFPSVERSEAFGIVLLEAMAFGK-PVISTEIGTGG--SYVNLHGVTGLVVPPGDPAALAEAIRRLLE 331 (357)
T ss_pred HHHHHHHHhCCEEEeCCcccccccchHHHHHHHcCC-CEEecCCCCch--hHHhhCCCceEEeCCCCHHHHHHHHHHHHH
Confidence 346778888999998852 2456778999999975 66766532111 222 224566777778877766666543
Q ss_pred ChHHHHHHHHHhccccccccee
Q 048016 345 PTEVILRKQRLLANPSMKQAML 366 (416)
Q Consensus 345 ~~~~~~~mq~~l~~~~~~~~f~ 366 (416)
.+++..+|+++..+ .+.++|.
T Consensus 332 ~~~~~~~~~~~~~~-~~~~~~s 352 (357)
T cd03795 332 DPELRERLGEAARE-RAEEEFT 352 (357)
T ss_pred CHHHHHHHHHHHHH-HHHHhcc
Confidence 45667788877653 2344443
No 58
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=75.93 E-value=3.2 Score=41.58 Aligned_cols=72 Identities=19% Similarity=0.261 Sum_probs=49.6
Q ss_pred cHHHhcccceeEEecCCCCCCchhHHHHHHhCceeEEeeccccCCCCCCCCCCceEEEEcCCChhcHHHHHhcC
Q 048016 271 TYYEDMQRAVFCLCPLGWAPWSPRLVEAVIFGCIPVIIADDIVLPFADAIPWEEIGVFIDEKDVPNLDAILTAI 344 (416)
Q Consensus 271 ~y~~~~~~S~FCl~p~G~~~~s~Rl~dal~~GCIPVii~d~~~lPf~~~idw~~fsv~v~~~~~~~l~~~L~~i 344 (416)
.+.+.++.+..++.|....+.+.-++|||.+| +|||.+|..--+ .+++.=..-.+.++..+..++.+.+..+
T Consensus 250 ~~~~~~~~~d~~v~~s~~Egf~~~~lEAma~G-~Pvv~s~~~~g~-~eiv~~~~~G~lv~~~d~~~la~~i~~l 321 (359)
T PRK09922 250 VVQQKIKNVSALLLTSKFEGFPMTLLEAMSYG-IPCISSDCMSGP-RDIIKPGLNGELYTPGNIDEFVGKLNKV 321 (359)
T ss_pred HHHHHHhcCcEEEECCcccCcChHHHHHHHcC-CCEEEeCCCCCh-HHHccCCCceEEECCCCHHHHHHHHHHH
Confidence 34566778889999988788899999999999 688888722222 2333223445666778887766665543
No 59
>PLN02939 transferase, transferring glycosyl groups
Probab=75.57 E-value=6.5 Score=45.05 Aligned_cols=90 Identities=14% Similarity=0.173 Sum_probs=59.0
Q ss_pred HHhcccceeEEecCCCCCCchhHHHHHHhCceeEEeeccccCCCCCCCCCC--------ceEEEEcCCChhcHHHHHhc-
Q 048016 273 YEDMQRAVFCLCPLGWAPWSPRLVEAVIFGCIPVIIADDIVLPFADAIPWE--------EIGVFIDEKDVPNLDAILTA- 343 (416)
Q Consensus 273 ~~~~~~S~FCl~p~G~~~~s~Rl~dal~~GCIPVii~d~~~lPf~~~idw~--------~fsv~v~~~~~~~l~~~L~~- 343 (416)
...++.|.++++|.=+.+++.-..|||.+||+||+...+= ++ +-+.|++ .-.+.++..+...+.+.|..
T Consensus 851 h~IYAaADIFLmPSr~EPfGLvqLEAMAyGtPPVVs~vGG-L~-DtV~d~d~e~i~~eg~NGfLf~~~D~eaLa~AL~rA 928 (977)
T PLN02939 851 HSIYAASDMFIIPSMFEPCGLTQMIAMRYGSVPIVRKTGG-LN-DSVFDFDDETIPVELRNGFTFLTPDEQGLNSALERA 928 (977)
T ss_pred HHHHHhCCEEEECCCccCCcHHHHHHHHCCCCEEEecCCC-Cc-ceeecCCccccccCCCceEEecCCCHHHHHHHHHHH
Confidence 3578999999999888999999999999999999753221 11 1122332 23556777777665544432
Q ss_pred ---C--ChHHHHHHHHHhcccccccceeec
Q 048016 344 ---I--PTEVILRKQRLLANPSMKQAMLFP 368 (416)
Q Consensus 344 ---i--~~~~~~~mq~~l~~~~~~~~f~y~ 368 (416)
+ .++...+|+++. +...|.|.
T Consensus 929 L~~~~~dpe~~~~L~~~a----m~~dFSWe 954 (977)
T PLN02939 929 FNYYKRKPEVWKQLVQKD----MNIDFSWD 954 (977)
T ss_pred HHHhccCHHHHHHHHHHH----HHhcCCHH
Confidence 2 467777777653 33456664
No 60
>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases. Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder.
Probab=71.11 E-value=9.2 Score=38.84 Aligned_cols=67 Identities=15% Similarity=0.139 Sum_probs=43.2
Q ss_pred ccHHHhcccceeEEecCCCCCCchhHHHHHHhCceeEEeeccccCCCCCCCCCCceEEEEcCCChhcHHHHH
Q 048016 270 TTYYEDMQRAVFCLCPLGWAPWSPRLVEAVIFGCIPVIIADDIVLPFADAIPWEEIGVFIDEKDVPNLDAIL 341 (416)
Q Consensus 270 ~~y~~~~~~S~FCl~p~G~~~~s~Rl~dal~~GCIPVii~d~~~lPf~~~idw~~fsv~v~~~~~~~l~~~L 341 (416)
.+..+.++.+..++.|.-.++.+..+.|||.+|| |||.++.-- ..+++. +...+.++. +...+.+.|
T Consensus 261 ~~~~~~l~~ad~~v~pS~~E~~g~~~~EAma~G~-PVI~s~~gg--~~e~i~-~~~~~~~~~-~~~~l~~~l 327 (398)
T cd03796 261 ERVRDVLVQGHIFLNTSLTEAFCIAIVEAASCGL-LVVSTRVGG--IPEVLP-PDMILLAEP-DVESIVRKL 327 (398)
T ss_pred HHHHHHHHhCCEEEeCChhhccCHHHHHHHHcCC-CEEECCCCC--chhhee-CCceeecCC-CHHHHHHHH
Confidence 5677888999999998766677889999999998 556665422 224443 222344443 544444443
No 61
>PHA01633 putative glycosyl transferase group 1
Probab=71.00 E-value=4.1 Score=41.24 Aligned_cols=41 Identities=20% Similarity=0.261 Sum_probs=35.6
Q ss_pred ccHHHhcccceeEEecCCCCCCchhHHHHHHhCceeEEeecc
Q 048016 270 TTYYEDMQRAVFCLCPLGWAPWSPRLVEAVIFGCIPVIIADD 311 (416)
Q Consensus 270 ~~y~~~~~~S~FCl~p~G~~~~s~Rl~dal~~GCIPVii~d~ 311 (416)
.+..+.++.|.+.+.|.-..+++.-+.|||.+|| |||.++.
T Consensus 215 ~dl~~~y~~aDifV~PS~~EgfGlvlLEAMA~G~-PVVas~~ 255 (335)
T PHA01633 215 EYIFAFYGAMDFTIVPSGTEGFGMPVLESMAMGT-PVIHQLM 255 (335)
T ss_pred HHHHHHHHhCCEEEECCccccCCHHHHHHHHcCC-CEEEccC
Confidence 3456788999999999888889999999999999 9998865
No 62
>KOG2619 consensus Fucosyltransferase [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=70.96 E-value=20 Score=36.84 Aligned_cols=101 Identities=15% Similarity=0.155 Sum_probs=64.6
Q ss_pred chHHHHHHHhcCCCceeee--cC-------CcccHHHhcccceeEEecCC---CCCCchhHHHHHHhCceeEEeeccccC
Q 048016 247 GARAAVWENFKDNPLFDIS--TE-------HPTTYYEDMQRAVFCLCPLG---WAPWSPRLVEAVIFGCIPVIIADDIVL 314 (416)
Q Consensus 247 ~vR~~l~~~~~~~~~~~~~--~~-------~~~~y~~~~~~S~FCl~p~G---~~~~s~Rl~dal~~GCIPVii~d~~~l 314 (416)
.-|..+++.+...-.+++- |. ......+.+.+-||-|.-.. ..--+-.|+-|+.+|.|||+++.....
T Consensus 210 ~~R~~~~~~L~k~l~iD~YG~c~~~~~~~~~~~~~~~~~s~YKFyLAfENS~c~DYVTEKfw~al~~gsVPVvlg~~n~e 289 (372)
T KOG2619|consen 210 SARLDYYKELMKHLEIDSYGECLRKNANRDPSDCLLETLSHYKFYLAFENSNCEDYVTEKFWNALDAGSVPVVLGPPNYE 289 (372)
T ss_pred hHHHHHHHHHHhhCceeeccccccccccCCCCCcceeecccceEEEEecccCCcccccHHHHhhhhcCcccEEECCcccc
Confidence 4566666655444333321 21 12346678889999998543 234478899999999999999985544
Q ss_pred CCCCCCCCCceEEEEcC-CChhcHHHHHhcCChHHHHH
Q 048016 315 PFADAIPWEEIGVFIDE-KDVPNLDAILTAIPTEVILR 351 (416)
Q Consensus 315 Pf~~~idw~~fsv~v~~-~~~~~l~~~L~~i~~~~~~~ 351 (416)
.|-+ ++.-|.|+. ..+.+|...|+.+.+++.+=
T Consensus 290 ~fvP----~~SfI~vdDF~s~~ela~ylk~L~~n~~~Y 323 (372)
T KOG2619|consen 290 NFVP----PDSFIHVDDFQSPQELAAYLKKLDKNPAAY 323 (372)
T ss_pred ccCC----CcceEehhhcCCHHHHHHHHHHhhcCHHHH
Confidence 4432 455566654 44667888898886554433
No 63
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=67.66 E-value=10 Score=39.07 Aligned_cols=84 Identities=14% Similarity=0.106 Sum_probs=51.5
Q ss_pred cccHHHhcccceeEEecCCC---CCCchhHHHHHHhCceeEEeeccccCCCCCCCCCCceEEEEcCCChhcHHHHHhcC-
Q 048016 269 PTTYYEDMQRAVFCLCPLGW---APWSPRLVEAVIFGCIPVIIADDIVLPFADAIPWEEIGVFIDEKDVPNLDAILTAI- 344 (416)
Q Consensus 269 ~~~y~~~~~~S~FCl~p~G~---~~~s~Rl~dal~~GCIPVii~d~~~lPf~~~idw~~fsv~v~~~~~~~l~~~L~~i- 344 (416)
..++.+.|+.|..++.|... .+...-++|||.+|+ |||.++.-- ..+++.=..-.+.++ +..+|-+.|..+
T Consensus 305 ~~~~~~~l~~aDv~v~~~~~~~~~~~p~~~~Eama~G~-PVI~s~~~~--~~eiv~~~~~G~lv~--d~~~la~~i~~ll 379 (415)
T cd03816 305 AEDYPKLLASADLGVSLHTSSSGLDLPMKVVDMFGCGL-PVCALDFKC--IDELVKHGENGLVFG--DSEELAEQLIDLL 379 (415)
T ss_pred HHHHHHHHHhCCEEEEccccccccCCcHHHHHHHHcCC-CEEEeCCCC--HHHHhcCCCCEEEEC--CHHHHHHHHHHHH
Confidence 46678888999888764221 235678999999999 999987422 123332223334443 555554444322
Q ss_pred ----ChHHHHHHHHHhc
Q 048016 345 ----PTEVILRKQRLLA 357 (416)
Q Consensus 345 ----~~~~~~~mq~~l~ 357 (416)
++++..+|.++..
T Consensus 380 ~~~~~~~~~~~m~~~~~ 396 (415)
T cd03816 380 SNFPNRGKLNSLKKGAQ 396 (415)
T ss_pred hcCCCHHHHHHHHHHHH
Confidence 2677888877665
No 64
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=66.71 E-value=20 Score=34.96 Aligned_cols=72 Identities=15% Similarity=0.040 Sum_probs=47.1
Q ss_pred cccHHHhcccceeEEecCCCCCCchhHHHHHHhCceeEEeeccccCCCCCCCCCCceEEEEcCCChhcHHHHHhcC
Q 048016 269 PTTYYEDMQRAVFCLCPLGWAPWSPRLVEAVIFGCIPVIIADDIVLPFADAIPWEEIGVFIDEKDVPNLDAILTAI 344 (416)
Q Consensus 269 ~~~y~~~~~~S~FCl~p~G~~~~s~Rl~dal~~GCIPVii~d~~~lPf~~~idw~~fsv~v~~~~~~~l~~~L~~i 344 (416)
..+..+.++++.++++|.-.++.+.-+.|||.+||-. |.++.- ...+.+.= ........++..++.+.+..+
T Consensus 257 ~~~~~~~~~~adi~v~ps~~E~~~~~~lEAma~G~Pv-I~s~~~--~~~~~i~~-~~~~~~~~~~~~~~a~~i~~l 328 (358)
T cd03812 257 RNDVPELLQAMDVFLFPSLYEGLPLVLIEAQASGLPC-ILSDTI--TKEVDLTD-LVKFLSLDESPEIWAEEILKL 328 (358)
T ss_pred cCCHHHHHHhcCEEEecccccCCCHHHHHHHHhCCCE-EEEcCC--chhhhhcc-CccEEeCCCCHHHHHHHHHHH
Confidence 4567788999999999988788899999999999855 455532 12222221 334444555555555555443
No 65
>COG4698 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=65.43 E-value=5.9 Score=36.33 Aligned_cols=22 Identities=23% Similarity=0.688 Sum_probs=17.7
Q ss_pred CchHHHHHHHHHHHHHHhhhhh
Q 048016 1 MKIWRWVFVGLVCTAFILRIDA 22 (416)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~ 22 (416)
|++|||+|++|+..-.+++..+
T Consensus 8 ~n~WKw~f~iLLAln~l~~~~i 29 (197)
T COG4698 8 LNYWKWLFFILLALNTLLAVLI 29 (197)
T ss_pred ccHHHHHHHHHHHHHHHHHHHh
Confidence 5789999999998777776544
No 66
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=64.70 E-value=10 Score=41.07 Aligned_cols=65 Identities=20% Similarity=0.148 Sum_probs=46.0
Q ss_pred ccHHHhcccceeEEecCCCCCCchhHHHHHHhCceeEEeeccccCCCCCCCCCCceEEEEcCCChhcH
Q 048016 270 TTYYEDMQRAVFCLCPLGWAPWSPRLVEAVIFGCIPVIIADDIVLPFADAIPWEEIGVFIDEKDVPNL 337 (416)
Q Consensus 270 ~~y~~~~~~S~FCl~p~G~~~~s~Rl~dal~~GCIPVii~d~~~lPf~~~idw~~fsv~v~~~~~~~l 337 (416)
.+..+.|+.+..++.|.-.++.+.-+.|||.+|| |||.++.--. .+.+.=..-.+.++..|...+
T Consensus 464 ~Dv~~~LaaADVfVlPS~~EGfp~vlLEAMA~Gl-PVVATdvGG~--~EiV~dG~nG~LVp~~D~~aL 528 (578)
T PRK15490 464 RDVGYWLQKMNVFILFSRYEGLPNVLIEAQMVGV-PVISTPAGGS--AECFIEGVSGFILDDAQTVNL 528 (578)
T ss_pred hhHHHHHHhCCEEEEcccccCccHHHHHHHHhCC-CEEEeCCCCc--HHHcccCCcEEEECCCChhhH
Confidence 4566778888888888777888999999999999 9998874222 233322445566777665443
No 67
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant. Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.
Probab=64.62 E-value=18 Score=42.08 Aligned_cols=92 Identities=15% Similarity=0.196 Sum_probs=59.6
Q ss_pred HHHhcccc----eeEEecCCCCCCchhHHHHHHhCceeEEeeccccCCCCCCCCCCceEEEEcCCChhcHHHHHhcC--C
Q 048016 272 YYEDMQRA----VFCLCPLGWAPWSPRLVEAVIFGCIPVIIADDIVLPFADAIPWEEIGVFIDEKDVPNLDAILTAI--P 345 (416)
Q Consensus 272 y~~~~~~S----~FCl~p~G~~~~s~Rl~dal~~GCIPVii~d~~~lPf~~~idw~~fsv~v~~~~~~~l~~~L~~i--~ 345 (416)
..+.++.+ ..++.|.=..++..-+.|||.+|+ |||.++.- ...+++.-..-.+.|+..+...|-+.|..+ .
T Consensus 561 vp~lYr~Ad~s~DVFV~PS~~EgFGLvlLEAMAcGl-PVVASdvG--G~~EII~~g~nGlLVdP~D~eaLA~AL~~LL~D 637 (1050)
T TIGR02468 561 VPDIYRLAAKTKGVFINPAFIEPFGLTLIEAAAHGL-PMVATKNG--GPVDIHRVLDNGLLVDPHDQQAIADALLKLVAD 637 (1050)
T ss_pred HHHHHHHhhhcCCeeeCCcccCCCCHHHHHHHHhCC-CEEEeCCC--CcHHHhccCCcEEEECCCCHHHHHHHHHHHhhC
Confidence 34445444 355557767788999999999995 99988742 233444444567788888887776665543 3
Q ss_pred hHHHHHHHHHhcccccccceeec
Q 048016 346 TEVILRKQRLLANPSMKQAMLFP 368 (416)
Q Consensus 346 ~~~~~~mq~~l~~~~~~~~f~y~ 368 (416)
++...+|.++..+ .+ ..|.|.
T Consensus 638 pelr~~m~~~gr~-~v-~~FSWe 658 (1050)
T TIGR02468 638 KQLWAECRQNGLK-NI-HLFSWP 658 (1050)
T ss_pred HHHHHHHHHHHHH-HH-HHCCHH
Confidence 4556778776553 22 346553
No 68
>PLN02316 synthase/transferase
Probab=63.37 E-value=9.9 Score=44.09 Aligned_cols=90 Identities=21% Similarity=0.217 Sum_probs=56.8
Q ss_pred HhcccceeEEecCCCCCCchhHHHHHHhCceeEEeeccccCCCCCCCCCC------------ceEEEEcCCChhcHHHHH
Q 048016 274 EDMQRAVFCLCPLGWAPWSPRLVEAVIFGCIPVIIADDIVLPFADAIPWE------------EIGVFIDEKDVPNLDAIL 341 (416)
Q Consensus 274 ~~~~~S~FCl~p~G~~~~s~Rl~dal~~GCIPVii~d~~~lPf~~~idw~------------~fsv~v~~~~~~~l~~~L 341 (416)
..++.+.+.++|.=+.+.+.-..|||++||+||+-..+ =+| +-+.|++ .-.+.++..+...|...|
T Consensus 915 ~iyaaADiflmPS~~EP~GLvqLEAMa~GtppVvs~vG-GL~-DtV~d~d~~~~~~~~~g~~~tGflf~~~d~~aLa~AL 992 (1036)
T PLN02316 915 LIYAGADFILVPSIFEPCGLTQLTAMRYGSIPVVRKTG-GLF-DTVFDVDHDKERAQAQGLEPNGFSFDGADAAGVDYAL 992 (1036)
T ss_pred HHHHhCcEEEeCCcccCccHHHHHHHHcCCCeEEEcCC-CcH-hhccccccccccccccccCCceEEeCCCCHHHHHHHH
Confidence 57899999999998899999999999999999995432 111 1123332 346677877766544433
Q ss_pred ----hcCC--hHHHHHHHHHhcccccccceeecC
Q 048016 342 ----TAIP--TEVILRKQRLLANPSMKQAMLFPQ 369 (416)
Q Consensus 342 ----~~i~--~~~~~~mq~~l~~~~~~~~f~y~~ 369 (416)
.... .+.+.+++++. +.+.|.|..
T Consensus 993 ~raL~~~~~~~~~~~~~~r~~----m~~dFSW~~ 1022 (1036)
T PLN02316 993 NRAISAWYDGRDWFNSLCKRV----MEQDWSWNR 1022 (1036)
T ss_pred HHHHhhhhhhHHHHHHHHHHH----HHhhCCHHH
Confidence 3221 22334444443 345677653
No 69
>PRK13731 conjugal transfer surface exclusion protein TraT; Provisional
Probab=61.74 E-value=26 Score=33.78 Aligned_cols=89 Identities=17% Similarity=0.150 Sum_probs=51.4
Q ss_pred CchHHHHHHHHHHHHHHhhh-hh---hhhccCCCccccccCCCCCCCCCCCCceeEEEEcCCCCCChhhhccccccccCc
Q 048016 1 MKIWRWVFVGLVCTAFILRI-DA---VELGRRHPTERISGSAGDVLEDDPVGRLKVFVYELPSKYNKKILQKDQRCLTHM 76 (416)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~kIYVYdlP~~fn~~ll~~~~~~~~~~ 76 (416)
||++++++++++|+++.+.= .| .---+-+|.++-=|..... +|.....|||=== |+. ....
T Consensus 1 M~~~~~~~~~~~~~~l~lsGC~a~~taI~kr~L~vqTkMS~TIfL---dP~~~ktVyv~vr----NTS--------d~~~ 65 (243)
T PRK13731 1 MKTKKLMMVALVSSTLALSGCGAMSTAIKKRNLEVKTQMSETIWL---EPASERTVFLQIK----NTS--------DKDM 65 (243)
T ss_pred CchhHHHHHHHHHHHHhhcCchhhhhhhhhcCcceeeeccccEEE---cCCCCceEEEEEe----eCC--------Ccch
Confidence 89999988776665554421 11 1112334444444444443 4444566776420 111 1134
Q ss_pred chHHHHHHHHHhcCCCc-CCCcCCCcEEE
Q 048016 77 FAAEIFMHRFLLSSPVR-TLNPEEADWFY 104 (416)
Q Consensus 77 y~~E~~~~~~L~~S~~r-T~dP~eAdlFy 104 (416)
..+|.-+...|....|+ |+||++|++.+
T Consensus 66 ~~l~~~i~~~L~~kGY~iv~~P~~A~Y~l 94 (243)
T PRK13731 66 SGLQGKIADAVKAKGYQVVTSPDKAYYWI 94 (243)
T ss_pred HHHHHHHHHHHHhCCeEEecChhhceeee
Confidence 56888888888877764 79999999875
No 70
>cd01635 Glycosyltransferase_GTB_type Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. The structures of the formed glycoconjugates are extremely diverse, reflecting a wide range of biological functions. The members of this family share a common GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=60.76 E-value=32 Score=30.49 Aligned_cols=41 Identities=17% Similarity=0.037 Sum_probs=31.6
Q ss_pred ccHHHhcccceeEEecCCCCCCchhHHHHHHhCceeEEeecc
Q 048016 270 TTYYEDMQRAVFCLCPLGWAPWSPRLVEAVIFGCIPVIIADD 311 (416)
Q Consensus 270 ~~y~~~~~~S~FCl~p~G~~~~s~Rl~dal~~GCIPVii~d~ 311 (416)
..+...+..|..+++|...++++..++|||.+||-. |.++.
T Consensus 173 ~~~~~~~~~~di~l~~~~~e~~~~~~~Eam~~g~pv-i~s~~ 213 (229)
T cd01635 173 ELLALLLAAADVFVLPSLREGFGLVVLEAMACGLPV-IATDV 213 (229)
T ss_pred HHHHHHhhcCCEEEecccccCcChHHHHHHhCCCCE-EEcCC
Confidence 344555566999999998888999999999998755 55543
No 71
>cd03793 GT1_Glycogen_synthase_GSY2_like Glycogen synthase, which is most closely related to the GT1 family of glycosyltransferases, catalyzes the transfer of a glucose molecule from UDP-glucose to a terminal branch of a glycogen molecule, a rate-limit step of glycogen biosynthesis. GSY2, the member of this family in S. cerevisiae, has been shown to possess glycogen synthase activity.
Probab=60.50 E-value=12 Score=40.57 Aligned_cols=60 Identities=23% Similarity=0.383 Sum_probs=45.0
Q ss_pred ccHHHhcccceeEEecCCCCCCchhHHHHHHhCceeEEeeccccCCC--CCCC-CCCceEEEEc
Q 048016 270 TTYYEDMQRAVFCLCPLGWAPWSPRLVEAVIFGCIPVIIADDIVLPF--ADAI-PWEEIGVFID 330 (416)
Q Consensus 270 ~~y~~~~~~S~FCl~p~G~~~~s~Rl~dal~~GCIPVii~d~~~lPf--~~~i-dw~~fsv~v~ 330 (416)
..|.+.++.+.-++.|.-+.+++.-..|||.+| +|||.++.--++- .+++ +-....+.|.
T Consensus 466 ~~y~E~~~g~dl~v~PS~yE~fG~~~lEAma~G-~PvI~t~~~gf~~~v~E~v~~~~~~gi~V~ 528 (590)
T cd03793 466 LDYEEFVRGCHLGVFPSYYEPWGYTPAECTVMG-IPSITTNLSGFGCFMEEHIEDPESYGIYIV 528 (590)
T ss_pred cchHHHhhhceEEEeccccCCCCcHHHHHHHcC-CCEEEccCcchhhhhHHHhccCCCceEEEe
Confidence 468999999999999998899999999999999 5999988643310 1222 3334567775
No 72
>PLN02605 monogalactosyldiacylglycerol synthase
Probab=58.50 E-value=31 Score=35.00 Aligned_cols=77 Identities=18% Similarity=0.275 Sum_probs=47.3
Q ss_pred cHHHhcccceeEEecCCCCCCchhHHHHHHhCceeEEeeccccCCCCCC------CCCCceEEEEcCCChhcHHHHHhcC
Q 048016 271 TYYEDMQRAVFCLCPLGWAPWSPRLVEAVIFGCIPVIIADDIVLPFADA------IPWEEIGVFIDEKDVPNLDAILTAI 344 (416)
Q Consensus 271 ~y~~~~~~S~FCl~p~G~~~~s~Rl~dal~~GCIPVii~d~~~lPf~~~------idw~~fsv~v~~~~~~~l~~~L~~i 344 (416)
+..+.|+.|...+.++| + --+.|||.+|+ |||+.+. .|-++. ++ ....+.+ .+...|.+.+..+
T Consensus 275 ~~~~l~~aaDv~V~~~g--~--~ti~EAma~g~-PvI~~~~--~pgqe~gn~~~i~~-~g~g~~~--~~~~~la~~i~~l 344 (382)
T PLN02605 275 NMEEWMGACDCIITKAG--P--GTIAEALIRGL-PIILNGY--IPGQEEGNVPYVVD-NGFGAFS--ESPKEIARIVAEW 344 (382)
T ss_pred cHHHHHHhCCEEEECCC--c--chHHHHHHcCC-CEEEecC--CCccchhhHHHHHh-CCceeec--CCHHHHHHHHHHH
Confidence 57788999998888776 2 24899999997 7777663 233331 22 3444443 4444444444332
Q ss_pred ---ChHHHHHHHHHhc
Q 048016 345 ---PTEVILRKQRLLA 357 (416)
Q Consensus 345 ---~~~~~~~mq~~l~ 357 (416)
.++..++|+++..
T Consensus 345 l~~~~~~~~~m~~~~~ 360 (382)
T PLN02605 345 FGDKSDELEAMSENAL 360 (382)
T ss_pred HcCCHHHHHHHHHHHH
Confidence 2667777877654
No 73
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=57.45 E-value=13 Score=38.24 Aligned_cols=105 Identities=17% Similarity=0.133 Sum_probs=58.4
Q ss_pred cHHHhcccceeEEecCCC-CCCchhHHHHHHhCceeEEeeccccCCCCCC---CCCCceEEEEcCCChhcHHHHHhcC--
Q 048016 271 TYYEDMQRAVFCLCPLGW-APWSPRLVEAVIFGCIPVIIADDIVLPFADA---IPWEEIGVFIDEKDVPNLDAILTAI-- 344 (416)
Q Consensus 271 ~y~~~~~~S~FCl~p~G~-~~~s~Rl~dal~~GCIPVii~d~~~lPf~~~---idw~~fsv~v~~~~~~~l~~~L~~i-- 344 (416)
+..+.++.+..++++... ...+.-+.|||.+|| |||.++... -+.+. +.=..+.+ +..|..+|-+.|..+
T Consensus 312 el~~~y~~aDi~~v~~S~~e~~g~~~lEAma~G~-PVI~g~~~~-~~~e~~~~~~~~g~~~--~~~d~~~La~~l~~ll~ 387 (425)
T PRK05749 312 ELGLLYAIADIAFVGGSLVKRGGHNPLEPAAFGV-PVISGPHTF-NFKEIFERLLQAGAAI--QVEDAEDLAKAVTYLLT 387 (425)
T ss_pred HHHHHHHhCCEEEECCCcCCCCCCCHHHHHHhCC-CEEECCCcc-CHHHHHHHHHHCCCeE--EECCHHHHHHHHHHHhc
Confidence 566788888887775432 234556999999996 888765421 11111 11123333 344555555544432
Q ss_pred ChHHHHHHHHHhcccccccceeecCCCCcchHHHHHHHHHHHHcC
Q 048016 345 PTEVILRKQRLLANPSMKQAMLFPQPAQPGDAFHQVLNGLARKLP 389 (416)
Q Consensus 345 ~~~~~~~mq~~l~~~~~~~~f~y~~~~~~~DAf~~il~~L~~r~~ 389 (416)
+++...+|.++..+ .+.. ..+|.+.+++.+..-++
T Consensus 388 ~~~~~~~m~~~a~~-~~~~---------~~~~~~~~~~~l~~~l~ 422 (425)
T PRK05749 388 DPDARQAYGEAGVA-FLKQ---------NQGALQRTLQLLEPYLP 422 (425)
T ss_pred CHHHHHHHHHHHHH-HHHh---------CccHHHHHHHHHHHhcc
Confidence 35566677665542 1111 14688888888765443
No 74
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=57.02 E-value=20 Score=35.26 Aligned_cols=82 Identities=13% Similarity=0.090 Sum_probs=49.2
Q ss_pred cHHHhcccceeEEecCCCCCCchhHHHHHHhCceeEEeeccccCCCC-----CCCCCCceEEEEcCCC--hhcHHHHHhc
Q 048016 271 TYYEDMQRAVFCLCPLGWAPWSPRLVEAVIFGCIPVIIADDIVLPFA-----DAIPWEEIGVFIDEKD--VPNLDAILTA 343 (416)
Q Consensus 271 ~y~~~~~~S~FCl~p~G~~~~s~Rl~dal~~GCIPVii~d~~~lPf~-----~~idw~~fsv~v~~~~--~~~l~~~L~~ 343 (416)
++.+.|..+..++.+.| +.-++|||.+|+ |||+.+.-..+-+ +.+.-....+.++..+ ...|.+.|+.
T Consensus 243 ~~~~~l~~ad~~v~~~g----~~~l~Ea~~~g~-Pvv~~~~~~~~~~~~~~~~~i~~~~~G~~~~~~~~~~~~l~~~i~~ 317 (348)
T TIGR01133 243 NMAAAYAAADLVISRAG----ASTVAELAAAGV-PAILIPYPYAADDQYYNAKFLEDLGAGLVIRQKELLPEKLLEALLK 317 (348)
T ss_pred CHHHHHHhCCEEEECCC----hhHHHHHHHcCC-CEEEeeCCCCccchhhHHHHHHHCCCEEEEecccCCHHHHHHHHHH
Confidence 67889999999998766 346899999996 7776531000000 1222245566666554 5555544432
Q ss_pred C--ChHHHHHHHHHhc
Q 048016 344 I--PTEVILRKQRLLA 357 (416)
Q Consensus 344 i--~~~~~~~mq~~l~ 357 (416)
+ +++...+|.++..
T Consensus 318 ll~~~~~~~~~~~~~~ 333 (348)
T TIGR01133 318 LLLDPANLEAMAEAAR 333 (348)
T ss_pred HHcCHHHHHHHHHHHH
Confidence 1 4566677776654
No 75
>PLN00142 sucrose synthase
Probab=54.17 E-value=18 Score=40.91 Aligned_cols=93 Identities=13% Similarity=0.059 Sum_probs=56.9
Q ss_pred HHHhccc-ceeEEecCCCCCCchhHHHHHHhCceeEEeeccccCCCCCCCCCCceEEEEcCCChhcHHHHHhc------C
Q 048016 272 YYEDMQR-AVFCLCPLGWAPWSPRLVEAVIFGCIPVIIADDIVLPFADAIPWEEIGVFIDEKDVPNLDAILTA------I 344 (416)
Q Consensus 272 y~~~~~~-S~FCl~p~G~~~~s~Rl~dal~~GCIPVii~d~~~lPf~~~idw~~fsv~v~~~~~~~l~~~L~~------i 344 (416)
....+++ +..+++|.=+.+.+.-+.|||.+|+ |||.++.=-+ .++|.=..-.+.|+..+...+-+.|.. -
T Consensus 659 Lyr~iadaaDVfVlPS~~EgFGLvvLEAMA~Gl-PVVATdvGG~--~EIV~dG~tG~LV~P~D~eaLA~aI~~lLekLl~ 735 (815)
T PLN00142 659 LYRYIADTKGAFVQPALYEAFGLTVVEAMTCGL-PTFATCQGGP--AEIIVDGVSGFHIDPYHGDEAANKIADFFEKCKE 735 (815)
T ss_pred HHHHHHhhCCEEEeCCcccCCCHHHHHHHHcCC-CEEEcCCCCH--HHHhcCCCcEEEeCCCCHHHHHHHHHHHHHHhcC
Confidence 3344443 3455678777888999999999997 7777764211 123333455777888887665544432 2
Q ss_pred ChHHHHHHHHHhcccccccceeec
Q 048016 345 PTEVILRKQRLLANPSMKQAMLFP 368 (416)
Q Consensus 345 ~~~~~~~mq~~l~~~~~~~~f~y~ 368 (416)
+++...+|.++..+ ++...|.|.
T Consensus 736 Dp~lr~~mg~~Ar~-rv~e~FSWe 758 (815)
T PLN00142 736 DPSYWNKISDAGLQ-RIYECYTWK 758 (815)
T ss_pred CHHHHHHHHHHHHH-HHHHhCCHH
Confidence 45666777766543 344566664
No 76
>cd04950 GT1_like_1 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=51.80 E-value=16 Score=36.84 Aligned_cols=67 Identities=16% Similarity=0.207 Sum_probs=40.8
Q ss_pred ccHHHhcccceeEEecCCCC-----CCchhHHHHHHhCceeEEeeccccCCCCCCCCCCceEEEEcCCChhcHHHHHhc
Q 048016 270 TTYYEDMQRAVFCLCPLGWA-----PWSPRLVEAVIFGCIPVIIADDIVLPFADAIPWEEIGVFIDEKDVPNLDAILTA 343 (416)
Q Consensus 270 ~~y~~~~~~S~FCl~p~G~~-----~~s~Rl~dal~~GCIPVii~d~~~lPf~~~idw~~fsv~v~~~~~~~l~~~L~~ 343 (416)
.+..+.++.+..|+.|.-.+ .....++|+|.+|+ |||.++ +.+..+...-.+.+ ..+..++.+.|+.
T Consensus 265 ~~l~~~l~~~Dv~l~P~~~~~~~~~~~P~Kl~EylA~G~-PVVat~-----~~~~~~~~~~~~~~-~~d~~~~~~ai~~ 336 (373)
T cd04950 265 KELPAYLAGFDVAILPFRLNELTRATSPLKLFEYLAAGK-PVVATP-----LPEVRRYEDEVVLI-ADDPEEFVAAIEK 336 (373)
T ss_pred HHHHHHHHhCCEEecCCccchhhhcCCcchHHHHhccCC-CEEecC-----cHHHHhhcCcEEEe-CCCHHHHHHHHHH
Confidence 45677899999999985322 23567999999996 777654 22333323323333 3455555544443
No 77
>TIGR02918 accessory Sec system glycosylation protein GtfA. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus. Members are associated with glycosylation of serine-rich glycoproteins exported by the accessory Sec system.
Probab=50.11 E-value=65 Score=34.39 Aligned_cols=85 Identities=18% Similarity=0.022 Sum_probs=49.3
Q ss_pred cHHHhcccceeEEecCCCCCCchhHHHHHHhCceeEEeeccccCCCCCCCCCCceEEEEcC----CC----hhcHHHHHh
Q 048016 271 TYYEDMQRAVFCLCPLGWAPWSPRLVEAVIFGCIPVIIADDIVLPFADAIPWEEIGVFIDE----KD----VPNLDAILT 342 (416)
Q Consensus 271 ~y~~~~~~S~FCl~p~G~~~~s~Rl~dal~~GCIPVii~d~~~lPf~~~idw~~fsv~v~~----~~----~~~l~~~L~ 342 (416)
+..+.+..+.-++.|.=..+.+.-+.|||.+|| |||.+|----| .+.|.=..-.+.++. .+ +..+-+.+.
T Consensus 385 ~~~~~~~~adv~v~pS~~Egfgl~~lEAma~G~-PVI~~dv~~G~-~eiI~~g~nG~lv~~~~~~~d~~~~~~~la~~I~ 462 (500)
T TIGR02918 385 NLSEVYKDYELYLSASTSEGFGLTLMEAVGSGL-GMIGFDVNYGN-PTFIEDNKNGYLIPIDEEEDDEDQIITALAEKIV 462 (500)
T ss_pred CHHHHHHhCCEEEEcCccccccHHHHHHHHhCC-CEEEecCCCCC-HHHccCCCCEEEEeCCccccchhHHHHHHHHHHH
Confidence 456777788877777766778899999999997 77776621011 122321333444541 22 333333322
Q ss_pred -cCChHHHHHHHHHhc
Q 048016 343 -AIPTEVILRKQRLLA 357 (416)
Q Consensus 343 -~i~~~~~~~mq~~l~ 357 (416)
-+.++.+.+|.++..
T Consensus 463 ~ll~~~~~~~~~~~a~ 478 (500)
T TIGR02918 463 EYFNSNDIDAFHEYSY 478 (500)
T ss_pred HHhChHHHHHHHHHHH
Confidence 224556777776655
No 78
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=49.32 E-value=42 Score=33.29 Aligned_cols=83 Identities=12% Similarity=0.142 Sum_probs=49.9
Q ss_pred ccHHHhcccceeEEecCCCCCCchhHHHHHHhCceeEEeeccccCC------CCCCCCCCceEEEEcCCC--hhcHHHHH
Q 048016 270 TTYYEDMQRAVFCLCPLGWAPWSPRLVEAVIFGCIPVIIADDIVLP------FADAIPWEEIGVFIDEKD--VPNLDAIL 341 (416)
Q Consensus 270 ~~y~~~~~~S~FCl~p~G~~~~s~Rl~dal~~GCIPVii~d~~~lP------f~~~idw~~fsv~v~~~~--~~~l~~~L 341 (416)
.++.+.|..+..+++..| +.-++|||.+|+--|++....... .+.+.+ ....+.++.++ ...|.+.+
T Consensus 244 ~~~~~~~~~~d~~i~~~g----~~~~~Ea~~~g~Pvv~~~~~~~~~~~~~~~~~~i~~-~~~g~~~~~~~~~~~~l~~~i 318 (357)
T PRK00726 244 DDMAAAYAAADLVICRAG----ASTVAELAAAGLPAILVPLPHAADDHQTANARALVD-AGAALLIPQSDLTPEKLAEKL 318 (357)
T ss_pred hhHHHHHHhCCEEEECCC----HHHHHHHHHhCCCEEEecCCCCCcCcHHHHHHHHHH-CCCEEEEEcccCCHHHHHHHH
Confidence 356788899999998766 345899999997555443211110 011223 34567777766 44555555
Q ss_pred hcC--ChHHHHHHHHHhc
Q 048016 342 TAI--PTEVILRKQRLLA 357 (416)
Q Consensus 342 ~~i--~~~~~~~mq~~l~ 357 (416)
+.+ .++...+|+++..
T Consensus 319 ~~ll~~~~~~~~~~~~~~ 336 (357)
T PRK00726 319 LELLSDPERLEAMAEAAR 336 (357)
T ss_pred HHHHcCHHHHHHHHHHHH
Confidence 432 3566677877654
No 79
>PRK14862 rimO ribosomal protein S12 methylthiotransferase; Provisional
Probab=48.31 E-value=30 Score=36.25 Aligned_cols=53 Identities=17% Similarity=0.220 Sum_probs=38.0
Q ss_pred CCCCceeEEEEcCCCCCChhhhccccccccCcchHHHHHHHHHhcCCC-cCCCcCCCcEEEEecccccccC
Q 048016 45 DPVGRLKVFVYELPSKYNKKILQKDQRCLTHMFAAEIFMHRFLLSSPV-RTLNPEEADWFYTPVYTTCDLT 114 (416)
Q Consensus 45 ~~~~~~kIYVYdlP~~fn~~ll~~~~~~~~~~y~~E~~~~~~L~~S~~-rT~dP~eAdlFyVP~~~~~~~~ 114 (416)
.|..+.|||+.-+ .|...++.+|.+... |....+ .|+++++||+++|= +|.+.
T Consensus 3 ~~~~~~~~~i~t~-------------GC~~N~~dse~~~~~-l~~~G~~~~~~~~~aD~ivin---TC~v~ 56 (440)
T PRK14862 3 KMTAAPKIGFVSL-------------GCPKALVDSERILTQ-LRAEGYEISPSYDGADLVIVN---TCGFI 56 (440)
T ss_pred CCCCCCEEEEEEc-------------CCCCcHHHHHHHHHH-HHHCcCEECCCcccCCEEEEe---ccccc
Confidence 3455668998876 466778888876654 555555 78899999999873 67654
No 80
>PRK14329 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=46.45 E-value=36 Score=36.03 Aligned_cols=59 Identities=29% Similarity=0.374 Sum_probs=41.8
Q ss_pred CCCCCCCCCCceeEEEEcCCCCCChhhhccccccccCcchHHHHHHHHHhcCCC-cCCCcCCCcEEEEecccccccC
Q 048016 39 GDVLEDDPVGRLKVFVYELPSKYNKKILQKDQRCLTHMFAAEIFMHRFLLSSPV-RTLNPEEADWFYTPVYTTCDLT 114 (416)
Q Consensus 39 ~~~~~~~~~~~~kIYVYdlP~~fn~~ll~~~~~~~~~~y~~E~~~~~~L~~S~~-rT~dP~eAdlFyVP~~~~~~~~ 114 (416)
+-+.|..+.+.-|||+.-+ .|...++.+|.+.- .|....+ .|.++++||+.+|= +|.+.
T Consensus 13 ~~~~~~~~~~~~~~~i~t~-------------GC~~N~~dse~~~~-~l~~~G~~~~~~~~~ADiviiN---TC~v~ 72 (467)
T PRK14329 13 ALVKEAKPKNTKKLFIESY-------------GCQMNFADSEIVAS-ILQMAGYNTTENLEEADLVLVN---TCSIR 72 (467)
T ss_pred cccccccCCCCCEEEEEec-------------CCCCcHHHHHHHHH-HHHHCcCEECCCcccCCEEEEe---Cccee
Confidence 3466777777678999976 46677888887554 4555555 78889999999873 56543
No 81
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=44.61 E-value=1.1e+02 Score=31.25 Aligned_cols=79 Identities=14% Similarity=0.129 Sum_probs=47.7
Q ss_pred ccHHHhcccceeEEecCCCCCCchhHHHHHHhCceeEEeeccccCCCCCCCC-----CCceEEEEcCCChhcHHHHHhcC
Q 048016 270 TTYYEDMQRAVFCLCPLGWAPWSPRLVEAVIFGCIPVIIADDIVLPFADAIP-----WEEIGVFIDEKDVPNLDAILTAI 344 (416)
Q Consensus 270 ~~y~~~~~~S~FCl~p~G~~~~s~Rl~dal~~GCIPVii~d~~~lPf~~~id-----w~~fsv~v~~~~~~~l~~~L~~i 344 (416)
.+..+.|+.|.+++..+| +.-+.||+.+|+ |||+.+. .|-++..+ =..+++.+. +..++.+.|..+
T Consensus 265 ~~~~~~~~~aDl~I~k~g----g~tl~EA~a~G~-PvI~~~~--~pgqe~~N~~~~~~~G~g~~~~--~~~~l~~~i~~l 335 (391)
T PRK13608 265 KHMNEWMASSQLMITKPG----GITISEGLARCI-PMIFLNP--APGQELENALYFEEKGFGKIAD--TPEEAIKIVASL 335 (391)
T ss_pred chHHHHHHhhhEEEeCCc----hHHHHHHHHhCC-CEEECCC--CCCcchhHHHHHHhCCcEEEeC--CHHHHHHHHHHH
Confidence 356778999999988554 235899999995 8888764 24333211 123444332 333444444332
Q ss_pred --ChHHHHHHHHHhc
Q 048016 345 --PTEVILRKQRLLA 357 (416)
Q Consensus 345 --~~~~~~~mq~~l~ 357 (416)
.++.+.+|+++..
T Consensus 336 l~~~~~~~~m~~~~~ 350 (391)
T PRK13608 336 TNGNEQLTNMISTME 350 (391)
T ss_pred hcCHHHHHHHHHHHH
Confidence 4677888888775
No 82
>TIGR02470 sucr_synth sucrose synthase. This model represents sucrose synthase, an enzyme that, despite its name, generally uses rather produces sucrose. Sucrose plus UDP (or ADP) becomes D-fructose plus UDP-glucose (or ADP-glucose), which is then available for cell wall (or starch) biosynthesis. The enzyme is homologous to sucrose phosphate synthase, which catalyzes the penultimate step in sucrose synthesis. Sucrose synthase is found, so far, exclusively in plants and cyanobacteria.
Probab=43.55 E-value=36 Score=38.51 Aligned_cols=86 Identities=9% Similarity=-0.011 Sum_probs=55.9
Q ss_pred eeEEecCCCCCCchhHHHHHHhCceeEEeeccccCCCCCCCCCCceEEEEcCCChhcHHHHHhcC------ChHHHHHHH
Q 048016 280 VFCLCPLGWAPWSPRLVEAVIFGCIPVIIADDIVLPFADAIPWEEIGVFIDEKDVPNLDAILTAI------PTEVILRKQ 353 (416)
Q Consensus 280 ~FCl~p~G~~~~s~Rl~dal~~GCIPVii~d~~~lPf~~~idw~~fsv~v~~~~~~~l~~~L~~i------~~~~~~~mq 353 (416)
..+++|.=+.+.+.-+.|||.+|+-. |.++.=-+ .++|.=..-.+.|+..+...+-+.|..+ +++...+|.
T Consensus 645 dVfV~PS~~EpFGLvvLEAMAcGlPV-VAT~~GG~--~EiV~dg~tGfLVdp~D~eaLA~aL~~ll~kll~dp~~~~~ms 721 (784)
T TIGR02470 645 GIFVQPALYEAFGLTVLEAMTCGLPT-FATRFGGP--LEIIQDGVSGFHIDPYHGEEAAEKIVDFFEKCDEDPSYWQKIS 721 (784)
T ss_pred cEEEECCcccCCCHHHHHHHHcCCCE-EEcCCCCH--HHHhcCCCcEEEeCCCCHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 46677887889999999999999855 44542111 1223224567778888877666555432 566777787
Q ss_pred HHhcccccccceeecC
Q 048016 354 RLLANPSMKQAMLFPQ 369 (416)
Q Consensus 354 ~~l~~~~~~~~f~y~~ 369 (416)
++..+ .+..+|.|..
T Consensus 722 ~~a~~-rV~~~FSW~~ 736 (784)
T TIGR02470 722 QGGLQ-RIYEKYTWKI 736 (784)
T ss_pred HHHHH-HHHHhCCHHH
Confidence 76543 3556777753
No 83
>PRK14332 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=42.45 E-value=45 Score=35.11 Aligned_cols=57 Identities=21% Similarity=0.419 Sum_probs=38.5
Q ss_pred CCCCCCCCCceeEEEEcCCCCCChhhhccccccccCcchHHHHHHHHHhcCCC-cCCCcCCCcEEEEecccccccC
Q 048016 40 DVLEDDPVGRLKVFVYELPSKYNKKILQKDQRCLTHMFAAEIFMHRFLLSSPV-RTLNPEEADWFYTPVYTTCDLT 114 (416)
Q Consensus 40 ~~~~~~~~~~~kIYVYdlP~~fn~~ll~~~~~~~~~~y~~E~~~~~~L~~S~~-rT~dP~eAdlFyVP~~~~~~~~ 114 (416)
++++++.. ..|||+.-+ .|...++.+|.+. ..|....+ .|.++++||+.+|= +|.+.
T Consensus 2 ~~~~~~~~-~~~~~i~t~-------------GC~~N~~dse~~~-~~l~~~G~~~~~~~~~ADvviiN---TC~v~ 59 (449)
T PRK14332 2 QVLEPEKK-LGKVYIETY-------------GCQMNEYDSGIVS-SLMRDAEYSTSNDPENSDIIFLN---TCAIR 59 (449)
T ss_pred CccccccC-CCEEEEEec-------------CCCCCHHHHHHHH-HHHHHCcCEECCCcccCCEEEEE---ccCee
Confidence 34555443 578888875 3666778888766 44555555 78899999999763 56543
No 84
>KOG1387 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=41.82 E-value=1.2e+02 Score=31.15 Aligned_cols=85 Identities=20% Similarity=0.261 Sum_probs=52.5
Q ss_pred cHHHhcccceeEEecCCCCCCchhHHHHHHhCceeEEeeccccCCCCC-CCCCCce-EEEEcCCChhcHHHHHhc--CCh
Q 048016 271 TYYEDMQRAVFCLCPLGWAPWSPRLVEAVIFGCIPVIIADDIVLPFAD-AIPWEEI-GVFIDEKDVPNLDAILTA--IPT 346 (416)
Q Consensus 271 ~y~~~~~~S~FCl~p~G~~~~s~Rl~dal~~GCIPVii~d~~~lPf~~-~idw~~f-sv~v~~~~~~~l~~~L~~--i~~ 346 (416)
+..+.+..+.+.+.-.=+...+..++|+|++|.|||.=..+ =|--| +.+|+.- .=++.+++..-...+|+. ...
T Consensus 349 ~lv~lL~~a~iGvh~MwNEHFGIsVVEyMAAGlIpi~h~Sg--GP~lDIV~~~~G~~tGFla~t~~EYaE~iLkIv~~~~ 426 (465)
T KOG1387|consen 349 KLVELLGKATIGVHTMWNEHFGISVVEYMAAGLIPIVHNSG--GPLLDIVTPWDGETTGFLAPTDEEYAEAILKIVKLNY 426 (465)
T ss_pred HHHHHhccceeehhhhhhhhcchhHHHHHhcCceEEEeCCC--CCceeeeeccCCccceeecCChHHHHHHHHHHHHcCH
Confidence 45678899999998887788899999999999999875432 23223 2445432 223334443333333432 244
Q ss_pred HHHHHHHHHhc
Q 048016 347 EVILRKQRLLA 357 (416)
Q Consensus 347 ~~~~~mq~~l~ 357 (416)
++...||++-.
T Consensus 427 ~~r~~~r~~AR 437 (465)
T KOG1387|consen 427 DERNMMRRNAR 437 (465)
T ss_pred HHHHHHHHHHH
Confidence 55666776543
No 85
>cd03788 GT1_TPS Trehalose-6-Phosphate Synthase (TPS) is a glycosyltransferase that catalyses the synthesis of alpha,alpha-1,1-trehalose-6-phosphate from glucose-6-phosphate using a UDP-glucose donor. It is a key enzyme in the trehalose synthesis pathway. Trehalose is a nonreducing disaccharide present in a wide variety of organisms and may serve as a source of energy and carbon. It is characterized most notably in insect, plant, and microbial cells. Its production is often associated with a variety of stress conditions, including desiccation, dehydration, heat, cold, and oxidation. This family represents the catalytic domain of the TPS. Some members of this domain family coexist with a C-terminal trehalose phosphatase domain.
Probab=40.51 E-value=25 Score=36.90 Aligned_cols=84 Identities=12% Similarity=-0.002 Sum_probs=57.7
Q ss_pred cccHHHhcccceeEEecCCCCCCchhHHHHHHhCce---eEEeeccccCCCCCCCCCCceEEEEcCCChhcHHHHHhc--
Q 048016 269 PTTYYEDMQRAVFCLCPLGWAPWSPRLVEAVIFGCI---PVIIADDIVLPFADAIPWEEIGVFIDEKDVPNLDAILTA-- 343 (416)
Q Consensus 269 ~~~y~~~~~~S~FCl~p~G~~~~s~Rl~dal~~GCI---PVii~d~~~lPf~~~idw~~fsv~v~~~~~~~l~~~L~~-- 343 (416)
..+....++.+.-++.|.-..+...-..|||.+||= |||+++.--.+-. ..-.+.|+..+...+-+.|..
T Consensus 351 ~~el~~~y~~aDv~v~pS~~Eg~~lv~lEAma~g~p~~g~vV~S~~~G~~~~-----~~~g~lv~p~d~~~la~ai~~~l 425 (460)
T cd03788 351 REELAALYRAADVALVTPLRDGMNLVAKEYVACQDDDPGVLILSEFAGAAEE-----LSGALLVNPYDIDEVADAIHRAL 425 (460)
T ss_pred HHHHHHHHHhccEEEeCccccccCcccceeEEEecCCCceEEEeccccchhh-----cCCCEEECCCCHHHHHHHHHHHH
Confidence 456778899999999988777788889999999996 6898874322111 133678888887776665542
Q ss_pred -CChHHHHHHHHHhc
Q 048016 344 -IPTEVILRKQRLLA 357 (416)
Q Consensus 344 -i~~~~~~~mq~~l~ 357 (416)
.++++..+|.++..
T Consensus 426 ~~~~~e~~~~~~~~~ 440 (460)
T cd03788 426 TMPLEERRERHRKLR 440 (460)
T ss_pred cCCHHHHHHHHHHHH
Confidence 35566555555444
No 86
>TIGR02400 trehalose_OtsA alpha,alpha-trehalose-phosphate synthase [UDP-forming]. This enzyme catalyzes the key, penultimate step in biosynthesis of trehalose, a compatible solute made as an osmoprotectant in some species in all three domains of life. The gene symbol OtsA stands for osmotically regulated trehalose synthesis A. Trehalose helps protect against both osmotic and thermal stresses, and is made from two glucose subunits. This model excludes glucosylglycerol-phosphate synthase, an enzyme of an analogous osmoprotectant system in many cyanobacterial strains. This model does not identify archaeal examples, as they are more divergent than glucosylglycerol-phosphate synthase. Sequences that score in the gray zone between the trusted and noise cutoffs include a number of yeast multidomain proteins in which the N-terminal domain may be functionally equivalent to this family. The gray zone also includes the OtsA of Cornyebacterium glutamicum (and related species), shown to be responsib
Probab=37.59 E-value=65 Score=33.98 Aligned_cols=83 Identities=12% Similarity=0.082 Sum_probs=56.7
Q ss_pred cccHHHhcccceeEEecCCCCCCchhHHHHHHhCcee----EEeeccccCCCCCCCCCCceEEEEcCCChhcHHHHHhc-
Q 048016 269 PTTYYEDMQRAVFCLCPLGWAPWSPRLVEAVIFGCIP----VIIADDIVLPFADAIPWEEIGVFIDEKDVPNLDAILTA- 343 (416)
Q Consensus 269 ~~~y~~~~~~S~FCl~p~G~~~~s~Rl~dal~~GCIP----Vii~d~~~lPf~~~idw~~fsv~v~~~~~~~l~~~L~~- 343 (416)
..+....++.+.-|++|+=..+..--..|||.+|+ | ||+++..=.+ +.+. -++.|+..|...+-+.|..
T Consensus 346 ~~el~aly~aaDv~vv~S~~EG~~Lv~lEamA~g~-P~~g~vVlS~~~G~~--~~l~---~gllVnP~d~~~lA~aI~~a 419 (456)
T TIGR02400 346 REELMALYRAADVGLVTPLRDGMNLVAKEYVAAQD-PKDGVLILSEFAGAA--QELN---GALLVNPYDIDGMADAIARA 419 (456)
T ss_pred HHHHHHHHHhCcEEEECccccccCccHHHHHHhcC-CCCceEEEeCCCCCh--HHhC---CcEEECCCCHHHHHHHHHHH
Confidence 35677889999999998866778888999999996 7 8888743211 1222 3678888888776665532
Q ss_pred --CChHHHHHHHHHhc
Q 048016 344 --IPTEVILRKQRLLA 357 (416)
Q Consensus 344 --i~~~~~~~mq~~l~ 357 (416)
.+.++..++.+++.
T Consensus 420 L~~~~~er~~r~~~~~ 435 (456)
T TIGR02400 420 LTMPLEEREERHRAMM 435 (456)
T ss_pred HcCCHHHHHHHHHHHH
Confidence 35555554444443
No 87
>PRK14333 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=33.43 E-value=58 Score=34.18 Aligned_cols=48 Identities=15% Similarity=0.186 Sum_probs=34.8
Q ss_pred eeEEEEcCCCCCChhhhccccccccCcchHHHHHHHHHhcCCC-cCCCcCCCcEEEEecccccccC
Q 048016 50 LKVFVYELPSKYNKKILQKDQRCLTHMFAAEIFMHRFLLSSPV-RTLNPEEADWFYTPVYTTCDLT 114 (416)
Q Consensus 50 ~kIYVYdlP~~fn~~ll~~~~~~~~~~y~~E~~~~~~L~~S~~-rT~dP~eAdlFyVP~~~~~~~~ 114 (416)
-|||+.-+ .|...++.+|.+.. .|.+..+ .|+++++||+++|= +|.+.
T Consensus 7 ~~~~i~t~-------------GC~~N~~ds~~~~~-~l~~~G~~~~~~~~~ADiiiiN---TC~v~ 55 (448)
T PRK14333 7 RSYWITTF-------------GCQMNKADSERMAG-ILEDMGYQWAEDELQADLVLYN---TCTIR 55 (448)
T ss_pred cEEEEEEc-------------CCCCcHHHHHHHHH-HHHHCcCEECCCcccCCEEEEE---eeeee
Confidence 37888875 46677888887664 4555555 78999999999873 57654
No 88
>PRK14340 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=32.46 E-value=72 Score=33.52 Aligned_cols=48 Identities=21% Similarity=0.315 Sum_probs=34.2
Q ss_pred eeEEEEcCCCCCChhhhccccccccCcchHHHHHHHHHhcCCC-cCCCcCCCcEEEEecccccccC
Q 048016 50 LKVFVYELPSKYNKKILQKDQRCLTHMFAAEIFMHRFLLSSPV-RTLNPEEADWFYTPVYTTCDLT 114 (416)
Q Consensus 50 ~kIYVYdlP~~fn~~ll~~~~~~~~~~y~~E~~~~~~L~~S~~-rT~dP~eAdlFyVP~~~~~~~~ 114 (416)
.|||+.-+ .|...++.+|.+... |....+ .|+++++||+++|= +|.+.
T Consensus 7 ~~~~i~tl-------------GC~~N~~dse~~~~~-l~~~G~~~~~~~~~ADviiiN---TC~v~ 55 (445)
T PRK14340 7 RKFYIHTF-------------GCQMNQADSEIITAL-LQDEGYVPAASEEDADIVLLN---TCAVR 55 (445)
T ss_pred cEEEEEec-------------CCCCcHHHHHHHHHH-HHHCcCEECCCcccCCEEEEE---eeeee
Confidence 36777765 466778888876654 555554 78899999999873 57654
No 89
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=31.35 E-value=66 Score=31.48 Aligned_cols=82 Identities=13% Similarity=0.114 Sum_probs=49.8
Q ss_pred ccHHHhcccceeEEecCCCCCCchhHHHHHHhCceeEEeecc-c------cCCCCCCCCCCceEEEEcCC--ChhcHHHH
Q 048016 270 TTYYEDMQRAVFCLCPLGWAPWSPRLVEAVIFGCIPVIIADD-I------VLPFADAIPWEEIGVFIDEK--DVPNLDAI 340 (416)
Q Consensus 270 ~~y~~~~~~S~FCl~p~G~~~~s~Rl~dal~~GCIPVii~d~-~------~lPf~~~idw~~fsv~v~~~--~~~~l~~~ 340 (416)
.++.+.|..+.+.+++.| ..-+.|||.+|+- ||+.+. . ..+.+.+.+ ....+.++.. +..+|.+.
T Consensus 244 ~~~~~~l~~ad~~v~~sg----~~t~~Eam~~G~P-vv~~~~~~~~~~~~~~~~~~l~~-~g~g~~v~~~~~~~~~l~~~ 317 (350)
T cd03785 244 DDMAAAYAAADLVISRAG----ASTVAELAALGLP-AILIPLPYAADDHQTANARALVK-AGAAVLIPQEELTPERLAAA 317 (350)
T ss_pred hhHHHHHHhcCEEEECCC----HhHHHHHHHhCCC-EEEeecCCCCCCcHHHhHHHHHh-CCCEEEEecCCCCHHHHHHH
Confidence 466778889999888776 2348999999975 555431 1 011111222 4556677655 56666655
Q ss_pred HhcC--ChHHHHHHHHHhc
Q 048016 341 LTAI--PTEVILRKQRLLA 357 (416)
Q Consensus 341 L~~i--~~~~~~~mq~~l~ 357 (416)
|+.+ +++...+|+++..
T Consensus 318 i~~ll~~~~~~~~~~~~~~ 336 (350)
T cd03785 318 LLELLSDPERLKAMAEAAR 336 (350)
T ss_pred HHHHhcCHHHHHHHHHHHH
Confidence 5443 4566777777654
No 90
>PRK14338 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=31.26 E-value=68 Score=33.82 Aligned_cols=48 Identities=19% Similarity=0.392 Sum_probs=34.1
Q ss_pred eeEEEEcCCCCCChhhhccccccccCcchHHHHHHHHHhcCCC-cCCCcCCCcEEEEecccccccC
Q 048016 50 LKVFVYELPSKYNKKILQKDQRCLTHMFAAEIFMHRFLLSSPV-RTLNPEEADWFYTPVYTTCDLT 114 (416)
Q Consensus 50 ~kIYVYdlP~~fn~~ll~~~~~~~~~~y~~E~~~~~~L~~S~~-rT~dP~eAdlFyVP~~~~~~~~ 114 (416)
.|||+.-+ .|...++.+|.+... |....+ .|+++++||+++|= +|.+.
T Consensus 21 ~~~~i~t~-------------GC~~N~~dse~~~~~-l~~~G~~~~~~~~~AD~~iiN---TC~v~ 69 (459)
T PRK14338 21 RRYYVWTV-------------GCQMNVSDSERLEAA-LQGVGYSPAERPEDADFIVLN---SCSVR 69 (459)
T ss_pred CEEEEEec-------------CCCCCHHHHHHHHHH-HHHCcCEECCCcccCCEEEEe---cccee
Confidence 35777764 466778888886655 554554 79999999999763 57554
No 91
>COG2355 Zn-dependent dipeptidase, microsomal dipeptidase homolog [Amino acid transport and metabolism]
Probab=30.02 E-value=26 Score=35.17 Aligned_cols=71 Identities=14% Similarity=0.055 Sum_probs=65.4
Q ss_pred CCCCCCchhHHHHHHhCceeEEeeccccCCCCCCCCCCceEEEEcCCChhcHHHHHhcCChHHHHHHHHHh
Q 048016 286 LGWAPWSPRLVEAVIFGCIPVIIADDIVLPFADAIPWEEIGVFIDEKDVPNLDAILTAIPTEVILRKQRLL 356 (416)
Q Consensus 286 ~G~~~~s~Rl~dal~~GCIPVii~d~~~lPf~~~idw~~fsv~v~~~~~~~l~~~L~~i~~~~~~~mq~~l 356 (416)
.|-++.++.+++.+.---|+|=+|.--.--|.|+++++++-|....+....|.+.=|++++++++++.+..
T Consensus 145 ~GLs~~Gk~lV~~~N~LgIiiDlSH~s~kt~~Dvl~~s~~PviaSHSN~~al~~h~RNl~D~qlkaI~~~g 215 (313)
T COG2355 145 GGLTPFGKELVREMNELGIIIDLSHLSDKTFWDVLDLSKAPVVASHSNARALVDHPRNLSDEQLKAIAETG 215 (313)
T ss_pred CCCCHHHHHHHHHHHhcCCEEEecccCCccHHHHHhccCCceEEecCCchhccCCCCCCCHHHHHHHHhcC
Confidence 57788899999999999999999988888999999999999999999999999999999999999998864
No 92
>COG0438 RfaG Glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=29.85 E-value=49 Score=30.64 Aligned_cols=41 Identities=27% Similarity=0.229 Sum_probs=31.1
Q ss_pred ccHHHhcccceeEEecCCCCCCchhHHHHHHhCceeEEeecc
Q 048016 270 TTYYEDMQRAVFCLCPLGWAPWSPRLVEAVIFGCIPVIIADD 311 (416)
Q Consensus 270 ~~y~~~~~~S~FCl~p~G~~~~s~Rl~dal~~GCIPVii~d~ 311 (416)
....+.++.+...+.|.-....+.-+.||+.+| +|||.++.
T Consensus 268 ~~~~~~~~~~~~~v~ps~~e~~~~~~~Ea~a~g-~pvi~~~~ 308 (381)
T COG0438 268 EELAELLASADVFVLPSLSEGFGLVLLEAMAAG-TPVIASDV 308 (381)
T ss_pred HHHHHHHHhCCEEEeccccccchHHHHHHHhcC-CcEEECCC
Confidence 345567777889999854445555699999999 99988764
No 93
>PRK10125 putative glycosyl transferase; Provisional
Probab=29.33 E-value=54 Score=33.83 Aligned_cols=66 Identities=17% Similarity=0.221 Sum_probs=48.7
Q ss_pred cHHHhcccceeEEecCCCCCCchhHHHHHHhCceeEEeeccccCCCCCCCCCCceEEEEcCCChhcHHHH
Q 048016 271 TYYEDMQRAVFCLCPLGWAPWSPRLVEAVIFGCIPVIIADDIVLPFADAIPWEEIGVFIDEKDVPNLDAI 340 (416)
Q Consensus 271 ~y~~~~~~S~FCl~p~G~~~~s~Rl~dal~~GCIPVii~d~~~lPf~~~idw~~fsv~v~~~~~~~l~~~ 340 (416)
+..+.++.+...+.|.-.++...-+.|||++|| |||.+|-=-.| ++++ ..-.+.++..|...|-+.
T Consensus 299 ~l~~~y~~aDvfV~pS~~Egfp~vilEAmA~G~-PVVat~~gG~~--Eiv~-~~~G~lv~~~d~~~La~~ 364 (405)
T PRK10125 299 KLMSALNQMDALVFSSRVDNYPLILCEALSIGV-PVIATHSDAAR--EVLQ-KSGGKTVSEEEVLQLAQL 364 (405)
T ss_pred HHHHHHHhCCEEEECCccccCcCHHHHHHHcCC-CEEEeCCCChH--HhEe-CCcEEEECCCCHHHHHhc
Confidence 456778888888888878888999999999995 88888743222 3443 235778888888777653
No 94
>COG0297 GlgA Glycogen synthase [Carbohydrate transport and metabolism]
Probab=28.60 E-value=60 Score=34.69 Aligned_cols=39 Identities=18% Similarity=0.226 Sum_probs=34.3
Q ss_pred HHHhcccceeEEecCCCCCCchhHHHHHHhCceeEEeec
Q 048016 272 YYEDMQRAVFCLCPLGWAPWSPRLVEAVIFGCIPVIIAD 310 (416)
Q Consensus 272 y~~~~~~S~FCl~p~G~~~~s~Rl~dal~~GCIPVii~d 310 (416)
+.+.++.|.+=++|.=+.|.+---..||+.|||||+-.-
T Consensus 362 a~~i~agaD~~lmPSrfEPcGL~ql~amryGtvpIv~~t 400 (487)
T COG0297 362 AHLIYAGADVILMPSRFEPCGLTQLYAMRYGTLPIVRET 400 (487)
T ss_pred HHHHHhcCCEEEeCCcCcCCcHHHHHHHHcCCcceEccc
Confidence 556778999999998889999999999999999998753
No 95
>cd02133 PA_C5a_like PA_C5a_like: Protease-associated domain containing proteins like Streptococcus pyogenes C5a peptidase. This group contains various PA domain-containing proteins similar to S. pyogenes C5a, including, i) Vpr, a minor extracellular serine protease from Bacillus subtilis, ii) a large molecular mass collagenolytic protease from Geobacillus collagenovorans MO-1, and iii) PrtS, a cell envelope protease from Streptococcus thermophilus CNRZ 385. Proteins in this group belong to the peptidase S8 family. C5a peptidase is a cell surface serine protease which specifically inactivates C5a [a chemotactic peptide, which attracts polymorphonuclear leukocytes (PMNs)], by cleaving it to release a 7-residue carboxy-terminal fragment which contains the PMN binding site. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promotin
Probab=28.59 E-value=1.2e+02 Score=26.36 Aligned_cols=42 Identities=17% Similarity=0.273 Sum_probs=29.9
Q ss_pred cHHHhcccceeEEecCCCCCCchhHHHHHHhCceeEEeeccc
Q 048016 271 TYYEDMQRAVFCLCPLGWAPWSPRLVEAVIFGCIPVIIADDI 312 (416)
Q Consensus 271 ~y~~~~~~S~FCl~p~G~~~~s~Rl~dal~~GCIPVii~d~~ 312 (416)
+|...-.+.+..||.+|.-........|...|..-|||.++-
T Consensus 40 d~~~~dv~GkIvL~~rg~c~~~~K~~~a~~aGA~gvIi~n~~ 81 (143)
T cd02133 40 DFEGKDVKGKIALIQRGEITFVEKIANAKAAGAVGVIIYNNV 81 (143)
T ss_pred ccCCCCccceEEEEECCCCCHHHHHHHHHHCCCeEEEEeecC
Confidence 343333467888888886444566778999999999997554
No 96
>PRK14326 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=28.21 E-value=1.1e+02 Score=32.67 Aligned_cols=51 Identities=20% Similarity=0.255 Sum_probs=34.9
Q ss_pred CCceeEEEEcCCCCCChhhhccccccccCcchHHHHHHHHHhcCCC-cCCCcCCCcEEEEecccccccC
Q 048016 47 VGRLKVFVYELPSKYNKKILQKDQRCLTHMFAAEIFMHRFLLSSPV-RTLNPEEADWFYTPVYTTCDLT 114 (416)
Q Consensus 47 ~~~~kIYVYdlP~~fn~~ll~~~~~~~~~~y~~E~~~~~~L~~S~~-rT~dP~eAdlFyVP~~~~~~~~ 114 (416)
.+.-||||.-+ .|...++.+|.+.. .|.+..+ .|+++++||+++|= +|.+.
T Consensus 11 ~~~~~~~i~T~-------------GC~~N~~dse~~~~-~L~~~G~~~~~~~e~ADvvviN---TCtv~ 62 (502)
T PRK14326 11 RGARTYQVRTY-------------GCQMNVHDSERLAG-LLEAAGYVRAAEGQDADVVVFN---TCAVR 62 (502)
T ss_pred CCCCEEEEEec-------------CCCCcHHHHHHHHH-HHHHCCCEECCCcCCCCEEEEE---CCCee
Confidence 33456888765 46667888887654 4555555 78889999999763 56543
No 97
>PRK14328 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=28.20 E-value=80 Score=32.99 Aligned_cols=40 Identities=33% Similarity=0.281 Sum_probs=28.5
Q ss_pred ccccCcchHHHHHHHHHhcCCC-cCCCcCCCcEEEEecccccccC
Q 048016 71 RCLTHMFAAEIFMHRFLLSSPV-RTLNPEEADWFYTPVYTTCDLT 114 (416)
Q Consensus 71 ~~~~~~y~~E~~~~~~L~~S~~-rT~dP~eAdlFyVP~~~~~~~~ 114 (416)
.|...++.+|.+... |....+ .|+++++||+..|= +|.+.
T Consensus 10 GC~~N~~ds~~~~~~-l~~~G~~~~~~~~~ADv~iiN---TC~v~ 50 (439)
T PRK14328 10 GCQMNEEDSEKLAGM-LKSMGYERTENREEADIIIFN---TCCVR 50 (439)
T ss_pred CCCCCHHHHHHHHHH-HHHCcCEECCCcCcCCEEEEe---cccEe
Confidence 466778888876654 555554 78899999999873 56553
No 98
>PRK14334 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=27.32 E-value=88 Score=32.73 Aligned_cols=40 Identities=20% Similarity=0.324 Sum_probs=28.7
Q ss_pred ccccCcchHHHHHHHHHhcCCC-cCCCcCCCcEEEEecccccccC
Q 048016 71 RCLTHMFAAEIFMHRFLLSSPV-RTLNPEEADWFYTPVYTTCDLT 114 (416)
Q Consensus 71 ~~~~~~y~~E~~~~~~L~~S~~-rT~dP~eAdlFyVP~~~~~~~~ 114 (416)
.|...++.+|.+.. .|....+ .|+++++||+.+|= +|.+.
T Consensus 9 GC~~N~~ds~~~~~-~l~~~G~~~~~~~~~ADi~iiN---TC~v~ 49 (440)
T PRK14334 9 GCQMNEYDTHLVES-ELVSLGAEIVDSVDEADFVLVN---TCAVR 49 (440)
T ss_pred CCCCcHHHHHHHHH-HHHHCcCEECCCcccCCEEEEe---cccee
Confidence 46677888887665 4555555 78899999999873 57554
No 99
>KOG3185 consensus Translation initiation factor 6 (eIF-6) [Translation, ribosomal structure and biogenesis]
Probab=26.45 E-value=51 Score=30.74 Aligned_cols=33 Identities=21% Similarity=0.325 Sum_probs=27.9
Q ss_pred ccceeEEecCCCCCCchhHHHHHHhCceeEEee
Q 048016 277 QRAVFCLCPLGWAPWSPRLVEAVIFGCIPVIIA 309 (416)
Q Consensus 277 ~~S~FCl~p~G~~~~s~Rl~dal~~GCIPVii~ 309 (416)
..-+|||+..|-+..-...|||=..+.|||+-.
T Consensus 19 LTNtYclva~ggS~nfys~~e~el~d~IPiV~t 51 (245)
T KOG3185|consen 19 LTNTYCLVAIGGSENFYSAFEAELGDVIPIVHT 51 (245)
T ss_pred cccceEEEEecCchhHHHHHHHHhcCccceEEe
Confidence 345799999888877888999999999999854
No 100
>PRK14335 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=26.04 E-value=65 Score=33.93 Aligned_cols=40 Identities=18% Similarity=0.343 Sum_probs=28.8
Q ss_pred ccccCcchHHHHHHHHHhcCCC-cCCCcCCCcEEEEecccccccC
Q 048016 71 RCLTHMFAAEIFMHRFLLSSPV-RTLNPEEADWFYTPVYTTCDLT 114 (416)
Q Consensus 71 ~~~~~~y~~E~~~~~~L~~S~~-rT~dP~eAdlFyVP~~~~~~~~ 114 (416)
.|...++.+|.+... |.+..+ .|.+|++||+.+|= +|.+.
T Consensus 9 GC~~N~~dse~~~~~-l~~~G~~~~~~~~~ADv~iiN---TC~v~ 49 (455)
T PRK14335 9 GCQMNVAESASMEQL-LLARGWTKAVDAETCDVLIIN---TCSVR 49 (455)
T ss_pred CCCCcHHHHHHHHHH-HHHCcCEECCCcccCCEEEEe---cccee
Confidence 466778888876654 544444 79999999999873 57654
No 101
>PRK14331 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=24.94 E-value=1e+02 Score=32.13 Aligned_cols=40 Identities=23% Similarity=0.238 Sum_probs=28.3
Q ss_pred ccccCcchHHHHHHHHHhcCCC-cCCCcCCCcEEEEecccccccC
Q 048016 71 RCLTHMFAAEIFMHRFLLSSPV-RTLNPEEADWFYTPVYTTCDLT 114 (416)
Q Consensus 71 ~~~~~~y~~E~~~~~~L~~S~~-rT~dP~eAdlFyVP~~~~~~~~ 114 (416)
.|...++.+|.+... |....+ .|+++++||+.+|= +|.+.
T Consensus 9 GC~~N~~ds~~~~~~-l~~~G~~~~~~~~~aDviiiN---TC~v~ 49 (437)
T PRK14331 9 GCQMNFNDSEKIKGI-LQTLGYEPADDWEEADLILVN---TCTIR 49 (437)
T ss_pred CCCCcHHHHHHHHHH-HHHCcCEECCCcccCCEEEEe---Cccee
Confidence 466778888876654 555554 78899999999763 56543
No 102
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=24.79 E-value=1e+02 Score=29.94 Aligned_cols=34 Identities=21% Similarity=0.241 Sum_probs=27.6
Q ss_pred ccHHHhcccceeEEecCCCCCCchhHHHHHHhCceeEEee
Q 048016 270 TTYYEDMQRAVFCLCPLGWAPWSPRLVEAVIFGCIPVIIA 309 (416)
Q Consensus 270 ~~y~~~~~~S~FCl~p~G~~~~s~Rl~dal~~GCIPVii~ 309 (416)
.+..+.|..|...++..|- -++|++.+| +|+|+-
T Consensus 233 ~~m~~lm~~aDl~Is~~G~-----T~~E~~a~g-~P~i~i 266 (279)
T TIGR03590 233 ENMAELMNEADLAIGAAGS-----TSWERCCLG-LPSLAI 266 (279)
T ss_pred HHHHHHHHHCCEEEECCch-----HHHHHHHcC-CCEEEE
Confidence 4577899999999998762 299999999 777763
No 103
>smart00672 CAP10 Putative lipopolysaccharide-modifying enzyme.
Probab=24.36 E-value=5.7e+02 Score=24.70 Aligned_cols=112 Identities=15% Similarity=0.187 Sum_probs=68.8
Q ss_pred CCCceeEeecccccccCCCCCCCCcccchHHHHHHHhcCCCc-e--eee--cC---------Cc---ccHHHhcccceeE
Q 048016 220 TPRSIFVYFRGLFYDVGNDPEGGYYARGARAAVWENFKDNPL-F--DIS--TE---------HP---TTYYEDMQRAVFC 282 (416)
Q Consensus 220 ~~R~~L~~FaG~~~~~~~~~~~~~ys~~vR~~l~~~~~~~~~-~--~~~--~~---------~~---~~y~~~~~~S~FC 282 (416)
+.|.-.++|+|+... +..|+.|++...+.++ + .+. +. .+ ..-.+...+-||=
T Consensus 81 ~~K~~~a~WRG~~~~-----------~~~R~~Lv~~~~~~p~~~da~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yKyl 149 (256)
T smart00672 81 SDKNAYAYWRGNPTV-----------ASERLDLIKCNQSSPELVNARITIQDWPGKCDGEEDAPGFKKSPLEEQCKHKYK 149 (256)
T ss_pred cccCcCccccCCCCC-----------CcchHHHHHHhcCCcccceeEEEEecCCCCChHHhcccCcCCCCHHHHhhcceE
Confidence 467788999998532 1278888887666553 2 221 10 00 1123455678999
Q ss_pred EecCCCCCCchhHHHHHHhCceeEEeeccccCCCCC-CCCCCceEEEEcC--CC--hhcHHHHHhcC
Q 048016 283 LCPLGWAPWSPRLVEAVIFGCIPVIIADDIVLPFAD-AIPWEEIGVFIDE--KD--VPNLDAILTAI 344 (416)
Q Consensus 283 l~p~G~~~~s~Rl~dal~~GCIPVii~d~~~lPf~~-~idw~~fsv~v~~--~~--~~~l~~~L~~i 344 (416)
+...|. .+|-||.--|.+++|++.....+..=|.+ ..+|.-|. -|.. ++ +.+..+.+++-
T Consensus 150 i~~dG~-~~S~rl~~~l~~~Svvl~~~~~~~~~~~~~L~P~~HYv-Pv~~d~sd~~l~~~i~~~~~~ 214 (256)
T smart00672 150 INIEGV-AWSVRLKYILACDSVVLKVKPEYYEFFSRGLQPWVHYW-PIKSDLSCRELKEAVDWGNEH 214 (256)
T ss_pred EecCCc-cchhhHHHHHhcCceEEEeCCchhHHHHhcccCccceE-EeeCCCchhhHHHHHHHHHhC
Confidence 999996 57889999999999999887544322332 34565552 3322 22 55555555553
No 104
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=24.18 E-value=99 Score=34.59 Aligned_cols=62 Identities=16% Similarity=0.048 Sum_probs=41.7
Q ss_pred ccHHHhcccceeEEecCCCCCCchhHHHHHHhCceeEEeeccccCCCCCCCCCCceEEEEcCCCh
Q 048016 270 TTYYEDMQRAVFCLCPLGWAPWSPRLVEAVIFGCIPVIIADDIVLPFADAIPWEEIGVFIDEKDV 334 (416)
Q Consensus 270 ~~y~~~~~~S~FCl~p~G~~~~s~Rl~dal~~GCIPVii~d~~~lPf~~~idw~~fsv~v~~~~~ 334 (416)
.+....|+.+...+.|.-..+.+.-++|||.+|| |||.++.-- ..++|.=..-.+.++..+.
T Consensus 583 ~dv~~ll~aaDv~VlpS~~Egfp~vlLEAMA~G~-PVVat~~gG--~~EiV~dg~~GlLv~~~d~ 644 (694)
T PRK15179 583 RRVGYWLTQFNAFLLLSRFEGLPNVLIEAQFSGV-PVVTTLAGG--AGEAVQEGVTGLTLPADTV 644 (694)
T ss_pred chHHHHHHhcCEEEeccccccchHHHHHHHHcCC-eEEEECCCC--hHHHccCCCCEEEeCCCCC
Confidence 3466778888888888766788999999999995 788776421 2233322444666775553
No 105
>PRK14336 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=23.28 E-value=79 Score=32.90 Aligned_cols=41 Identities=17% Similarity=0.194 Sum_probs=28.7
Q ss_pred ccccCcchHHHHHHHHHhcCCCcCCCcCCCcEEEEecccccccC
Q 048016 71 RCLTHMFAAEIFMHRFLLSSPVRTLNPEEADWFYTPVYTTCDLT 114 (416)
Q Consensus 71 ~~~~~~y~~E~~~~~~L~~S~~rT~dP~eAdlFyVP~~~~~~~~ 114 (416)
.|...++.+|.+........--.|+++++||+++|= +|.+.
T Consensus 10 GC~~N~~dse~~~~~l~~~G~~~~~~~~~AD~viiN---TC~v~ 50 (418)
T PRK14336 10 GCQMNQAESERLGRLFELWGYSLADKAEDAELVLVN---SCVVR 50 (418)
T ss_pred CCCCcHHHHHHHHHHHHHCcCEECCCcccCCEEEEe---cccEe
Confidence 466778888886655444433478999999999763 56554
No 106
>PRK14325 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=23.20 E-value=1.1e+02 Score=31.85 Aligned_cols=40 Identities=25% Similarity=0.365 Sum_probs=28.2
Q ss_pred ccccCcchHHHHHHHHHhcCC-CcCCCcCCCcEEEEecccccccC
Q 048016 71 RCLTHMFAAEIFMHRFLLSSP-VRTLNPEEADWFYTPVYTTCDLT 114 (416)
Q Consensus 71 ~~~~~~y~~E~~~~~~L~~S~-~rT~dP~eAdlFyVP~~~~~~~~ 114 (416)
.|...++.+|.+... |.... -.|+++++||+++|= +|.+.
T Consensus 12 GC~~N~~ds~~~~~~-l~~~g~~~~~~~~~aDvviin---TC~v~ 52 (444)
T PRK14325 12 GCQMNEYDSSKMADL-LGAEGYELTDDPEEADLILLN---TCSIR 52 (444)
T ss_pred CCCCcHHHHHHHHHH-HHHCcCEECCCcCCCCEEEEE---cceee
Confidence 466778888886655 44444 478899999999873 45443
No 107
>COG0621 MiaB 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis]
Probab=22.87 E-value=90 Score=32.88 Aligned_cols=40 Identities=25% Similarity=0.387 Sum_probs=28.6
Q ss_pred ccccCcchHHHHHHHHHhcCC--CcCCCcCCCcEEEEecccccccC
Q 048016 71 RCLTHMFAAEIFMHRFLLSSP--VRTLNPEEADWFYTPVYTTCDLT 114 (416)
Q Consensus 71 ~~~~~~y~~E~~~~~~L~~S~--~rT~dP~eAdlFyVP~~~~~~~~ 114 (416)
.|....|.+|.+.-. |.... -.|+||+|||+.+|= +|.+.
T Consensus 11 GC~~N~~DSe~m~~~-L~~~G~~~~~~~~~eADvviiN---TC~V~ 52 (437)
T COG0621 11 GCQMNLYDSERMAGL-LEAAGYEELVEDPEEADVVIIN---TCAVR 52 (437)
T ss_pred CCCccHHHHHHHHHH-HHHcCCccccCCcccCCEEEEe---cCeee
Confidence 466778989986644 54444 489999999999763 56553
No 108
>PF07038 DUF1324: Protein of unknown function (DUF1324); InterPro: IPR009757 This family consists of several Circovirus proteins of around 60 residues in length. The function of this family is unknown.
Probab=21.67 E-value=56 Score=23.40 Aligned_cols=40 Identities=28% Similarity=0.639 Sum_probs=28.5
Q ss_pred cccceeEEecCCC-CCCchhHHHHHHhCceeEEeeccccCCCCC
Q 048016 276 MQRAVFCLCPLGW-APWSPRLVEAVIFGCIPVIIADDIVLPFAD 318 (416)
Q Consensus 276 ~~~S~FCl~p~G~-~~~s~Rl~dal~~GCIPVii~d~~~lPf~~ 318 (416)
.-+|.||+.|--+ +..++|-|-.-..||----+. .||.++
T Consensus 6 vfqsrfcifpltfkssasprkfltnvtgccsatvt---rlplsn 46 (59)
T PF07038_consen 6 VFQSRFCIFPLTFKSSASPRKFLTNVTGCCSATVT---RLPLSN 46 (59)
T ss_pred EEeeeeEEEEeeeccCCChHHHhhcccceeeeeEE---eccchh
Confidence 3579999999755 345889888888999765543 456543
No 109
>PF09911 DUF2140: Uncharacterized protein conserved in bacteria (DUF2140); InterPro: IPR018672 This family of conserved hypothetical proteins has no known function.
Probab=21.53 E-value=76 Score=29.34 Aligned_cols=17 Identities=24% Similarity=0.831 Sum_probs=12.1
Q ss_pred chHHHHHHHHHHHHHHh
Q 048016 2 KIWRWVFVGLVCTAFIL 18 (416)
Q Consensus 2 ~~~~~~~~~~~~~~~~~ 18 (416)
..|||+|++|+..-.++
T Consensus 1 N~WK~aF~~Lla~~l~~ 17 (187)
T PF09911_consen 1 NWWKWAFLILLALNLAF 17 (187)
T ss_pred ChHHHHHHHHHHHHHHH
Confidence 36999999986554433
No 110
>TIGR00089 RNA modification enzyme, MiaB family. This subfamily is aparrently a part of a larger superfamily of enzymes utilizing both a 4Fe4S cluster and S-adenosyl methionine (SAM) to initiate radical reactions. MiaB acts on a particular isoprenylated Adenine base of certain tRNAs causing thiolation at an aromatic carbon, and probably also transferring a methyl grouyp from SAM to the thiol. The particular substrate of the three other clades is unknown but may be very closely related.
Probab=20.56 E-value=1.3e+02 Score=31.15 Aligned_cols=35 Identities=29% Similarity=0.270 Sum_probs=26.1
Q ss_pred ccccCcchHHHHHHHHHhcCCC-cCCCcCCCcEEEEe
Q 048016 71 RCLTHMFAAEIFMHRFLLSSPV-RTLNPEEADWFYTP 106 (416)
Q Consensus 71 ~~~~~~y~~E~~~~~~L~~S~~-rT~dP~eAdlFyVP 106 (416)
.|...++.+|.+... |....+ .|+++++||+..|=
T Consensus 8 GC~~N~~ds~~~~~~-l~~~g~~~~~~~~~aD~v~in 43 (429)
T TIGR00089 8 GCQMNEADSEIMAGL-LKEAGYEVTDDPEEADVIIIN 43 (429)
T ss_pred CCCCcHHHHHHHHHH-HHHCcCEECCCcccCCEEEEe
Confidence 466778888876644 555555 78899999999874
No 111
>TIGR01574 miaB-methiolase tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB. Hits to this model span all major groups of bacteria and eukaryotes, but not archaea, which are known to lack this particular tRNA modification. The enzyme from Thermotoga maritima has been cloned, expressed, spectroscopically characterized and shown to complement the E. coli MiaB enzyme.
Probab=20.35 E-value=1.3e+02 Score=31.37 Aligned_cols=40 Identities=23% Similarity=0.294 Sum_probs=28.2
Q ss_pred ccccCcchHHHHHHHHHhcC-CC-cCCCcCCCcEEEEecccccccC
Q 048016 71 RCLTHMFAAEIFMHRFLLSS-PV-RTLNPEEADWFYTPVYTTCDLT 114 (416)
Q Consensus 71 ~~~~~~y~~E~~~~~~L~~S-~~-rT~dP~eAdlFyVP~~~~~~~~ 114 (416)
.|...++.+|.+... |... .+ .|.++++||+..|= +|.+.
T Consensus 8 GC~~N~~dse~~~~~-l~~~~G~~~~~~~~~aDv~iiN---TC~v~ 49 (438)
T TIGR01574 8 GCQMNVRDSEHMAAL-LTAKEGYALTEDAKEADVLLIN---TCSVR 49 (438)
T ss_pred CCCCcHHHHHHHHHH-HHhcCCcEECCCcccCCEEEEe---ccCee
Confidence 366778888876655 4444 44 78899999999763 56553
No 112
>KOG3397 consensus Acetyltransferases [General function prediction only]
Probab=20.03 E-value=1.3e+02 Score=27.74 Aligned_cols=34 Identities=32% Similarity=0.817 Sum_probs=26.6
Q ss_pred cCCCcCCCcEEEEecccccccCCCCCCCCCChhHHHHHHHHHHhhcCc
Q 048016 93 RTLNPEEADWFYTPVYTTCDLTPNGLPLPFKSPRMMRSAIQLISSNWP 140 (416)
Q Consensus 93 rT~dP~eAdlFyVP~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~P 140 (416)
-|-+|.-|+||+||+-.+ .+++++....|.++||
T Consensus 4 etpapS~~~l~~vPiH~r--------------PELlk~~~~LIN~eWP 37 (225)
T KOG3397|consen 4 ETPAPSMPDLFFVPLHDR--------------PELLKESMTLINSEWP 37 (225)
T ss_pred CCCCCCCCcceeEecccc--------------HHHHHHHHHHHhccCC
Confidence 467899999999998542 3778888888877655
Done!