BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048017
(566 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2WQ8|A Chain A, Glycan Labelling Using Engineered Variants Of Galactose
Oxidase Obtained By Directed Evolution
Length = 661
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 107/464 (23%), Positives = 179/464 (38%), Gaps = 70/464 (15%)
Query: 125 LLQTDTWCSSGAVLSDGTLVQTGGYNVGDRVIRLFTPCNDEGCDWVELSKNLWDRRWYAS 184
+ + D +C ++ +G +V TGG + + L+ +D W+ ++ R Y S
Sbjct: 243 VTKHDMFCPGISMDGNGQIVVTGGNDA--KKTSLYDSSSDS---WIP-GPDMQVARGYQS 296
Query: 185 NQILPDNRIIVVGGR-RVFTYEFYPKIDSLSSSLYLRFLIETRDPGEENNLYPFLHLLPD 243
+ + D R+ +GG +E ++ S SS + +P L D
Sbjct: 297 SATMSDGRVFTIGGSFSGGVFEKNGEVYSPSSKTWTSLPNAKVNP----------MLTAD 346
Query: 244 GNLFIFANRRSILFDYINNKLVKEFPVIPGNDKRNYPSTGSSILLPVKLSAGSDGNGTAA 303
++ + LF + K F P Y ++GS + SAG +
Sbjct: 347 KQGLYKSDNHAWLFGW---KKGSVFQAGPSTAMNWYYTSGSGDVK----SAGKRQSNRGV 399
Query: 304 LPDAEVMVCGGAP-----AGAFIKSDKESVYVEASRTCGRLKVTDKYP------VWSMEF 352
PDA +CG A G + Y ++ T +T P V++
Sbjct: 400 APDA---MCGNAVMYDAVKGKILTFGGSPDYTDSDATTNAHIITLGEPGTSPNTVFASNG 456
Query: 353 MPMPRVMSDMLLLPSGDVIIINGASNGTAGWEDAEE--------PDR-RFVVLNPSKIPR 403
+ R ++LP G I G G +ED+ P++ F NP+ I R
Sbjct: 457 LYFARTFHTSVVLPDGSTFITGGQRRGII-FEDSTPVFTPEIYVPEQDTFYKQNPNSIVR 515
Query: 404 MYHSSAVVLPDGRILVGGSNPHRRYNFTAYPYPTDLSLEAFHPHYLDPENAYM--RPSIL 461
YHS +++LPDGR+ GG + F P+YL N + RP I
Sbjct: 516 AYHSISLLLPDGRVFNGGG------GLCGDCTTNHFDAQIFTPNYLYDSNGNLATRPKI- 568
Query: 462 SLESIDRTVSYNEVFAVTFELSSYSPSGEISVSLMTPSFTTHSFAMNQRXXXXXXXXXXX 521
T + + V ++ + S SL+ TH+ +QR
Sbjct: 569 -------TRTSTQSVKVGGRITISTDSSISKASLIRYGTATHTVNTDQR-RIPLTLTNNG 620
Query: 522 XXXYAYKVVVNGPPTATVAPPGYYMMFVVH-AGIPSHAVWVKVT 564
Y+++V P + VA PGY+M+FV++ AG+PS A ++VT
Sbjct: 621 GNSYSFQV----PSDSGVALPGYWMLFVMNSAGVPSVASTIRVT 660
>pdb|2EIB|A Chain A, Crystal Structure Of Galactose Oxidase, W290h Mutant
Length = 639
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 107/464 (23%), Positives = 180/464 (38%), Gaps = 70/464 (15%)
Query: 125 LLQTDTWCSSGAVLSDGTLVQTGGYNVGDRVIRLFTPCNDEGCDWVELSKNLWDRRWYAS 184
+ + D +C ++ +G +V TGG + + L+ +D W+ ++ R Y S
Sbjct: 221 VTKHDMFCPGISMDGNGQIVVTGGNDA--KKTSLYDSSSDS---WIP-GPDMQVARGYQS 274
Query: 185 NQILPDNRIIVVGGRRVF-TYEFYPKIDSLSSSLYLRFLIETRDPGEENNLYPFLHLLPD 243
+ + D R+ +GG +E ++ S SS + +P L D
Sbjct: 275 SATMSDGRVFTIGGSHSGGVFEKNGEVYSPSSKTWTSLPNAKVNP----------MLTAD 324
Query: 244 GNLFIFANRRSILFDYINNKLVKEFPVIPGNDKRNYPSTGSSILLPVKLSAGSDGNGTAA 303
++ + LF + K F P Y ++GS + SAG +
Sbjct: 325 KQGLYRSDNHAWLFGW---KKGSVFQAGPSTAMNWYYTSGSGDVK----SAGKRQSNRGV 377
Query: 304 LPDAEVMVCGGAP-----AGAFIKSDKESVYVEASRTCGRLKVTDKYP------VWSMEF 352
PDA +CG A G + Y ++ T +T P V++
Sbjct: 378 APDA---MCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNG 434
Query: 353 MPMPRVMSDMLLLPSGDVIIINGASNGTAGWEDAEE--------PDR-RFVVLNPSKIPR 403
+ R ++LP G I G G +ED+ P++ F NP+ I R
Sbjct: 435 LYFARTFHTSVVLPDGSTFITGGQRRGIP-FEDSTPVFTPEIYVPEQDTFYKQNPNSIVR 493
Query: 404 MYHSSAVVLPDGRILVGGSNPHRRYNFTAYPYPTDLSLEAFHPHYLDPENAYM--RPSIL 461
+YHS +++LPDGR+ GG + F P+YL N + RP I
Sbjct: 494 VYHSISLLLPDGRVFNGGG------GLCGDCTTNHFDAQIFTPNYLYNSNGNLATRPKI- 546
Query: 462 SLESIDRTVSYNEVFAVTFELSSYSPSGEISVSLMTPSFTTHSFAMNQRXXXXXXXXXXX 521
T + + V ++ + S SL+ TH+ +QR
Sbjct: 547 -------TRTSTQSVKVGGRITISTDSSISKASLIRYGTATHTVNTDQR-RIPLTLTNNG 598
Query: 522 XXXYAYKVVVNGPPTATVAPPGYYMMFVVH-AGIPSHAVWVKVT 564
Y+++V P + VA PGY+M+FV++ AG+PS A ++VT
Sbjct: 599 GNSYSFQV----PSDSGVALPGYWMLFVMNSAGVPSVASTIRVT 638
>pdb|2EIC|A Chain A, Crystal Structure Of Galactose Oxidase Mutant W290f
Length = 639
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 107/464 (23%), Positives = 180/464 (38%), Gaps = 70/464 (15%)
Query: 125 LLQTDTWCSSGAVLSDGTLVQTGGYNVGDRVIRLFTPCNDEGCDWVELSKNLWDRRWYAS 184
+ + D +C ++ +G +V TGG + + L+ +D W+ ++ R Y S
Sbjct: 221 VTKHDMFCPGISMDGNGQIVVTGGNDA--KKTSLYDSSSDS---WIP-GPDMQVARGYQS 274
Query: 185 NQILPDNRIIVVGGR-RVFTYEFYPKIDSLSSSLYLRFLIETRDPGEENNLYPFLHLLPD 243
+ + D R+ +GG +E ++ S SS + +P L D
Sbjct: 275 SATMSDGRVFTIGGSFSGGVFEKNGEVYSPSSKTWTSLPNAKVNP----------MLTAD 324
Query: 244 GNLFIFANRRSILFDYINNKLVKEFPVIPGNDKRNYPSTGSSILLPVKLSAGSDGNGTAA 303
++ + LF + K F P Y ++GS + SAG +
Sbjct: 325 KQGLYRSDNHAWLFGW---KKGSVFQAGPSTAMNWYYTSGSGDVK----SAGKRQSNRGV 377
Query: 304 LPDAEVMVCGGAP-----AGAFIKSDKESVYVEASRTCGRLKVTDKYP------VWSMEF 352
PDA +CG A G + Y ++ T +T P V++
Sbjct: 378 APDA---MCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNG 434
Query: 353 MPMPRVMSDMLLLPSGDVIIINGASNGTAGWEDAEE--------PDR-RFVVLNPSKIPR 403
+ R ++LP G I G G +ED+ P++ F NP+ I R
Sbjct: 435 LYFARTFHTSVVLPDGSTFITGGQRRGIP-FEDSTPVFTPEIYVPEQDTFYKQNPNSIVR 493
Query: 404 MYHSSAVVLPDGRILVGGSNPHRRYNFTAYPYPTDLSLEAFHPHYLDPENAYM--RPSIL 461
+YHS +++LPDGR+ GG + F P+YL N + RP I
Sbjct: 494 VYHSISLLLPDGRVFNGGG------GLCGDCTTNHFDAQIFTPNYLYNSNGNLATRPKI- 546
Query: 462 SLESIDRTVSYNEVFAVTFELSSYSPSGEISVSLMTPSFTTHSFAMNQRXXXXXXXXXXX 521
T + + V ++ + S SL+ TH+ +QR
Sbjct: 547 -------TRTSTQSVKVGGRITISTDSSISKASLIRYGTATHTVNTDQR-RIPLTLTNNG 598
Query: 522 XXXYAYKVVVNGPPTATVAPPGYYMMFVVH-AGIPSHAVWVKVT 564
Y+++V P + VA PGY+M+FV++ AG+PS A ++VT
Sbjct: 599 GNSYSFQV----PSDSGVALPGYWMLFVMNSAGVPSVASTIRVT 638
>pdb|2EIE|A Chain A, Crystal Structure Of Galactose Oxidase Complexed With
Azide
pdb|1GOF|A Chain A, Novel Thioether Bond Revealed By A 1.7 Angstroms Crystal
Structure Of Galactose Oxidase
pdb|1GOG|A Chain A, Novel Thioether Bond Revealed By A 1.7 Angstroms Crystal
Structure Of Galactose Oxidase
pdb|1GOH|A Chain A, Novel Thioether Bond Revealed By A 1.7 Angstroms Crystal
Structure Of Galactose Oxidase
pdb|2JKX|A Chain A, Galactose Oxidase. Matgo. Copper Free, Expressed In Pichia
Pastoris.
pdb|2VZ1|A Chain A, Premat-Galactose Oxidase
pdb|2VZ3|A Chain A, Bleached Galactose Oxidase
Length = 639
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 107/464 (23%), Positives = 180/464 (38%), Gaps = 70/464 (15%)
Query: 125 LLQTDTWCSSGAVLSDGTLVQTGGYNVGDRVIRLFTPCNDEGCDWVELSKNLWDRRWYAS 184
+ + D +C ++ +G +V TGG + + L+ +D W+ ++ R Y S
Sbjct: 221 VTKHDMFCPGISMDGNGQIVVTGGNDA--KKTSLYDSSSDS---WIP-GPDMQVARGYQS 274
Query: 185 NQILPDNRIIVVGGR-RVFTYEFYPKIDSLSSSLYLRFLIETRDPGEENNLYPFLHLLPD 243
+ + D R+ +GG +E ++ S SS + +P L D
Sbjct: 275 SATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNP----------MLTAD 324
Query: 244 GNLFIFANRRSILFDYINNKLVKEFPVIPGNDKRNYPSTGSSILLPVKLSAGSDGNGTAA 303
++ + LF + K F P Y ++GS + SAG +
Sbjct: 325 KQGLYRSDNHAWLFGW---KKGSVFQAGPSTAMNWYYTSGSGDVK----SAGKRQSNRGV 377
Query: 304 LPDAEVMVCGGAP-----AGAFIKSDKESVYVEASRTCGRLKVTDKYP------VWSMEF 352
PDA +CG A G + Y ++ T +T P V++
Sbjct: 378 APDA---MCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNG 434
Query: 353 MPMPRVMSDMLLLPSGDVIIINGASNGTAGWEDAEE--------PDR-RFVVLNPSKIPR 403
+ R ++LP G I G G +ED+ P++ F NP+ I R
Sbjct: 435 LYFARTFHTSVVLPDGSTFITGGQRRGIP-FEDSTPVFTPEIYVPEQDTFYKQNPNSIVR 493
Query: 404 MYHSSAVVLPDGRILVGGSNPHRRYNFTAYPYPTDLSLEAFHPHYLDPENAYM--RPSIL 461
+YHS +++LPDGR+ GG + F P+YL N + RP I
Sbjct: 494 VYHSISLLLPDGRVFNGGG------GLCGDCTTNHFDAQIFTPNYLYNSNGNLATRPKI- 546
Query: 462 SLESIDRTVSYNEVFAVTFELSSYSPSGEISVSLMTPSFTTHSFAMNQRXXXXXXXXXXX 521
T + + V ++ + S SL+ TH+ +QR
Sbjct: 547 -------TRTSTQSVKVGGRITISTDSSISKASLIRYGTATHTVNTDQR-RIPLTLTNNG 598
Query: 522 XXXYAYKVVVNGPPTATVAPPGYYMMFVVH-AGIPSHAVWVKVT 564
Y+++V P + VA PGY+M+FV++ AG+PS A ++VT
Sbjct: 599 GNSYSFQV----PSDSGVALPGYWMLFVMNSAGVPSVASTIRVT 638
>pdb|2EID|A Chain A, Galactose Oxidase W290g Mutant
Length = 639
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 107/464 (23%), Positives = 180/464 (38%), Gaps = 70/464 (15%)
Query: 125 LLQTDTWCSSGAVLSDGTLVQTGGYNVGDRVIRLFTPCNDEGCDWVELSKNLWDRRWYAS 184
+ + D +C ++ +G +V TGG + + L+ +D W+ ++ R Y S
Sbjct: 221 VTKHDMFCPGISMDGNGQIVVTGGNDA--KKTSLYDSSSDS---WIP-GPDMQVARGYQS 274
Query: 185 NQILPDNRIIVVGGR-RVFTYEFYPKIDSLSSSLYLRFLIETRDPGEENNLYPFLHLLPD 243
+ + D R+ +GG +E ++ S SS + +P L D
Sbjct: 275 SATMSDGRVFTIGGSGSGGVFEKNGEVYSPSSKTWTSLPNAKVNP----------MLTAD 324
Query: 244 GNLFIFANRRSILFDYINNKLVKEFPVIPGNDKRNYPSTGSSILLPVKLSAGSDGNGTAA 303
++ + LF + K F P Y ++GS + SAG +
Sbjct: 325 KQGLYRSDNHAWLFGW---KKGSVFQAGPSTAMNWYYTSGSGDVK----SAGKRQSNRGV 377
Query: 304 LPDAEVMVCGGAP-----AGAFIKSDKESVYVEASRTCGRLKVTDKYP------VWSMEF 352
PDA +CG A G + Y ++ T +T P V++
Sbjct: 378 APDA---MCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNG 434
Query: 353 MPMPRVMSDMLLLPSGDVIIINGASNGTAGWEDAEE--------PDR-RFVVLNPSKIPR 403
+ R ++LP G I G G +ED+ P++ F NP+ I R
Sbjct: 435 LYFARTFHTSVVLPDGSTFITGGQRRGIP-FEDSTPVFTPEIYVPEQDTFYKQNPNSIVR 493
Query: 404 MYHSSAVVLPDGRILVGGSNPHRRYNFTAYPYPTDLSLEAFHPHYLDPENAYM--RPSIL 461
+YHS +++LPDGR+ GG + F P+YL N + RP I
Sbjct: 494 VYHSISLLLPDGRVFNGGG------GLCGDCTTNHFDAQIFTPNYLYNSNGNLATRPKI- 546
Query: 462 SLESIDRTVSYNEVFAVTFELSSYSPSGEISVSLMTPSFTTHSFAMNQRXXXXXXXXXXX 521
T + + V ++ + S SL+ TH+ +QR
Sbjct: 547 -------TRTSTQSVKVGGRITISTDSSISKASLIRYGTATHTVNTDQR-RIPLTLTNNG 598
Query: 522 XXXYAYKVVVNGPPTATVAPPGYYMMFVVH-AGIPSHAVWVKVT 564
Y+++V P + VA PGY+M+FV++ AG+PS A ++VT
Sbjct: 599 GNSYSFQV----PSDSGVALPGYWMLFVMNSAGVPSVASTIRVT 638
>pdb|1T2X|A Chain A, Glactose Oxidase C383s Mutant Identified By Directed
Evolution
Length = 639
Score = 62.4 bits (150), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 105/462 (22%), Positives = 181/462 (39%), Gaps = 66/462 (14%)
Query: 125 LLQTDTWCSSGAVLSDGTLVQTGGYNVGDRVIRLFTPCNDEGCDWVELSKNLWDRRWYAS 184
+ + D +C ++ +G +V TGG + + L+ +D W+ ++ R Y S
Sbjct: 221 VTKHDMFCPGISMDGNGQIVVTGGNDA--KKTSLYDSSSDS---WIP-GPDMQVARGYQS 274
Query: 185 NQILPDNRIIVVGGR-RVFTYEFYPKIDSLSSSLYLRFLIETRDPGEENNLYPFLHLLPD 243
+ + D R+ +GG +E ++ S SS + +P L D
Sbjct: 275 SATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNP----------MLTAD 324
Query: 244 GNLFIFANRRSILFDYINNKLVKEFPVIPGNDKRNYPSTGSSILLPVKLSAGSDG----- 298
++ + LF + K F P Y ++GS + + G
Sbjct: 325 KQGLYRSDNHAWLFGW---KKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDA 381
Query: 299 -NGTAALPDA---EVMVCGGAPAGAFIKSDKESVYVEASRTCGRLKVTDKYPVWSMEFMP 354
+G A + DA +++ GG+P D ++ T G T V++ +
Sbjct: 382 MSGNAVMYDAVKGKILTFGGSPD----YQDSDATTNAHIITLGEPG-TSPNTVFASNGLY 436
Query: 355 MPRVMSDMLLLPSGDVIIINGASNGTAGWEDAEE--------PDR-RFVVLNPSKIPRMY 405
R ++LP G I G G +ED+ P++ F NP+ I R+Y
Sbjct: 437 FARTFHTSVVLPDGSTFITGGQRRGIP-FEDSTPVFTPEIYVPEQDTFYKQNPNSIVRVY 495
Query: 406 HSSAVVLPDGRILVGGSNPHRRYNFTAYPYPTDLSLEAFHPHYLDPENAYM--RPSILSL 463
HS +++LPDGR+ GG + F P+YL N + RP I
Sbjct: 496 HSISLLLPDGRVFNGGG------GLCGDCTTNHFDAQIFTPNYLYNSNGNLATRPKI--- 546
Query: 464 ESIDRTVSYNEVFAVTFELSSYSPSGEISVSLMTPSFTTHSFAMNQRXXXXXXXXXXXXX 523
T + + V ++ + S SL+ TH+ +QR
Sbjct: 547 -----TRTSTQSVKVGGRITISTDSSISKASLIRYGTATHTVNTDQR-RIPLTLTNNGGN 600
Query: 524 XYAYKVVVNGPPTATVAPPGYYMMFVVH-AGIPSHAVWVKVT 564
Y+++V P + VA PGY+M+FV++ AG+PS A ++VT
Sbjct: 601 SYSFQV----PSDSGVALPGYWMLFVMNSAGVPSVASTIRVT 638
>pdb|1K3I|A Chain A, Crystal Structure Of The Precursor Of Galactose Oxidase
Length = 656
Score = 62.0 bits (149), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 105/449 (23%), Positives = 173/449 (38%), Gaps = 70/449 (15%)
Query: 140 DGTLVQTGGYNVGDRVIRLFTPCNDEGCDWVELSKNLWDRRWYASNQILPDNRIIVVGGR 199
+G +V TGG + + L+ +D W+ ++ R Y S+ + D R+ +GG
Sbjct: 253 NGQIVVTGGNDA--KKTSLYDSSSDS---WIP-GPDMQVARGYQSSATMSDGRVFTIGGS 306
Query: 200 -RVFTYEFYPKIDSLSSSLYLRFLIETRDPGEENNLYPFLHLLPDGNLFIFANRRSILFD 258
+E ++ S SS + +P L D ++ + LF
Sbjct: 307 WSGGVFEKNGEVYSPSSKTWTSLPNAKVNP----------MLTADKQGLYRSDNHAWLFG 356
Query: 259 YINNKLVKEFPVIPGNDKRNYPSTGSSILLPVKLSAGSDGNGTAALPDAEVMVCGGAP-- 316
+ K F P Y ++GS + SAG + PDA +CG A
Sbjct: 357 W---KKGSVFQAGPSTAMNWYYTSGSGDVK----SAGKRQSNRGVAPDA---MCGNAVMY 406
Query: 317 ---AGAFIKSDKESVYVEASRTCGRLKVTDKYP------VWSMEFMPMPRVMSDMLLLPS 367
G + Y ++ T +T P V++ + R ++LP
Sbjct: 407 DAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPD 466
Query: 368 GDVIIINGASNGTAGWEDAEE--------PDR-RFVVLNPSKIPRMYHSSAVVLPDGRIL 418
G I G G +ED+ P++ F NP+ I R+YHS +++LPDGR+
Sbjct: 467 GSTFITGGQRRGIP-FEDSTPVFTPEIYVPEQDTFYKQNPNSIVRVYHSISLLLPDGRVF 525
Query: 419 VGGSNPHRRYNFTAYPYPTDLSLEAFHPHYLDPENAYM--RPSILSLESIDRTVSYNEVF 476
GG + F P+YL N + RP I T + +
Sbjct: 526 NGGG------GLCGDCTTNHFDAQIFTPNYLYNSNGNLATRPKI--------TRTSTQSV 571
Query: 477 AVTFELSSYSPSGEISVSLMTPSFTTHSFAMNQRXXXXXXXXXXXXXXYAYKVVVNGPPT 536
V ++ + S SL+ TH+ +QR Y+++V P
Sbjct: 572 KVGGRITISTDSSISKASLIRYGTATHTVNTDQR-RIPLTLTNNGGNSYSFQV----PSD 626
Query: 537 ATVAPPGYYMMFVVH-AGIPSHAVWVKVT 564
+ VA PGY+M+FV++ AG+PS A ++VT
Sbjct: 627 SGVALPGYWMLFVMNSAGVPSVASTIRVT 655
>pdb|2ZU0|A Chain A, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
pdb|2ZU0|B Chain B, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
Length = 423
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 29/71 (40%), Gaps = 10/71 (14%)
Query: 135 GAVLSDGTLVQTGGYNVGDRVIRLFTPCNDEGCD---WVELSKNLWDRRWYASNQILPDN 191
GAVL T Q G N R+ L P +E CD W+E +K + R
Sbjct: 250 GAVLRHNTSTQLNGENSTLRINSLAMPVKNEVCDTRTWLEHNKGFCNSRQLHKT------ 303
Query: 192 RIIVVGGRRVF 202
I+ GR VF
Sbjct: 304 -IVSDKGRAVF 313
>pdb|1VH4|A Chain A, Crystal Structure Of A Stabilizer Of Iron Transporter
pdb|1VH4|B Chain B, Crystal Structure Of A Stabilizer Of Iron Transporter
Length = 435
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 29/71 (40%), Gaps = 10/71 (14%)
Query: 135 GAVLSDGTLVQTGGYNVGDRVIRLFTPCNDEGCD---WVELSKNLWDRRWYASNQILPDN 191
GAVL T Q G N R+ L P +E CD W+E +K + R
Sbjct: 252 GAVLRHNTSTQLNGENSTLRINSLAMPVKNEVCDTRTWLEHNKGFCNSRQLHKT------ 305
Query: 192 RIIVVGGRRVF 202
I+ GR VF
Sbjct: 306 -IVSDKGRAVF 315
>pdb|3MTR|A Chain A, Crystal Structure Of The Ig5-Fn1 Tandem Of Human Ncam
pdb|3MTR|B Chain B, Crystal Structure Of The Ig5-Fn1 Tandem Of Human Ncam
Length = 215
Score = 30.0 bits (66), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 23/106 (21%), Positives = 42/106 (39%), Gaps = 4/106 (3%)
Query: 99 EGDVGQLDCTAHSVLYDIASNTFRPLLLQTDTWCSSGAVLSDGTLVQTGGYNVGDRVIRL 158
E D G +CTA + I + +L+Q DT SS ++ T +
Sbjct: 85 ENDFGNYNCTA---VNRIGQESLEFILVQADT-PSSPSIDQVEPYSSTAQVQFDEPEATG 140
Query: 159 FTPCNDEGCDWVELSKNLWDRRWYASNQILPDNRIIVVGGRRVFTY 204
P +W + + +W +WY + + + + +VG + TY
Sbjct: 141 GVPILKYKAEWRAVGEEVWHSKWYDAKEASMEGIVTIVGLKPETTY 186
>pdb|3LKK|A Chain A, Crystal Structure Of The Isopentenyl Phosphate Kinase
Substr Complex
pdb|3LKK|B Chain B, Crystal Structure Of The Isopentenyl Phosphate Kinase
Substr Complex
Length = 249
Score = 29.3 bits (64), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 25/43 (58%)
Query: 58 QSSIGISAMHMQVLNNDKVIIFDRTDMGPSNLSLPIDKCRKEG 100
+SSIG S +H + N D ++I +MG +S+PI R +G
Sbjct: 69 RSSIGYSIVHRDMENLDLMVIDAMIEMGMRPISVPISALRYDG 111
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.137 0.423
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,148,259
Number of Sequences: 62578
Number of extensions: 731790
Number of successful extensions: 1631
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1602
Number of HSP's gapped (non-prelim): 15
length of query: 566
length of database: 14,973,337
effective HSP length: 104
effective length of query: 462
effective length of database: 8,465,225
effective search space: 3910933950
effective search space used: 3910933950
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)