Query 048017
Match_columns 566
No_of_seqs 348 out of 1919
Neff 7.5
Searched_HMMs 46136
Date Fri Mar 29 05:30:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048017.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048017hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF07250 Glyoxal_oxid_N: Glyox 100.0 2E-45 4.3E-50 361.6 24.2 238 66-314 1-243 (243)
2 KOG4441 Proteins containing BT 100.0 1.9E-36 4.2E-41 335.2 27.7 265 72-411 283-568 (571)
3 KOG4441 Proteins containing BT 100.0 2.6E-33 5.6E-38 310.3 24.4 245 139-449 283-548 (571)
4 cd02851 Galactose_oxidase_C_te 100.0 2.3E-34 5E-39 244.9 11.7 100 452-564 1-101 (101)
5 PF09118 DUF1929: Domain of un 100.0 7.9E-34 1.7E-38 242.0 10.2 97 457-563 1-98 (98)
6 PHA02713 hypothetical protein; 100.0 7.9E-32 1.7E-36 299.1 23.6 235 110-399 273-543 (557)
7 PHA02713 hypothetical protein; 100.0 6.4E-30 1.4E-34 283.9 24.3 250 142-449 259-535 (557)
8 TIGR03547 muta_rot_YjhT mutatr 100.0 9.1E-29 2E-33 259.9 26.9 242 134-426 11-333 (346)
9 PLN02153 epithiospecifier prot 100.0 4.6E-27 1E-31 246.6 27.3 286 50-426 5-326 (341)
10 PRK14131 N-acetylneuraminic ac 100.0 5E-27 1.1E-31 249.6 27.2 270 121-447 19-368 (376)
11 PHA02790 Kelch-like protein; P 100.0 2.2E-27 4.8E-32 259.7 24.0 217 114-448 251-471 (480)
12 TIGR03547 muta_rot_YjhT mutatr 100.0 2.6E-26 5.6E-31 241.3 27.0 251 67-378 11-332 (346)
13 TIGR03548 mutarot_permut cycli 99.9 1.2E-25 2.7E-30 234.0 25.2 261 66-427 6-316 (323)
14 PHA02790 Kelch-like protein; P 99.9 7.8E-26 1.7E-30 247.5 23.7 205 70-350 268-476 (480)
15 PRK14131 N-acetylneuraminic ac 99.9 3.5E-25 7.5E-30 235.4 25.7 281 53-394 18-373 (376)
16 PHA03098 kelch-like protein; P 99.9 7.8E-25 1.7E-29 243.2 24.4 242 110-404 265-526 (534)
17 PLN02193 nitrile-specifier pro 99.9 3E-24 6.5E-29 234.4 27.2 269 51-425 150-454 (470)
18 PHA03098 kelch-like protein; P 99.9 2.9E-23 6.4E-28 230.6 24.5 231 51-355 273-523 (534)
19 TIGR03548 mutarot_permut cycli 99.9 5.2E-23 1.1E-27 214.3 23.1 233 53-378 52-314 (323)
20 PLN02193 nitrile-specifier pro 99.9 4.2E-22 9.1E-27 217.6 28.4 266 137-450 117-413 (470)
21 PLN02153 epithiospecifier prot 99.9 3.2E-22 7E-27 209.9 25.6 251 116-450 4-287 (341)
22 KOG4693 Uncharacterized conser 99.7 2.3E-16 5E-21 152.6 21.1 279 53-425 3-313 (392)
23 KOG4693 Uncharacterized conser 99.7 1.2E-16 2.5E-21 154.7 16.1 231 51-377 53-312 (392)
24 KOG0379 Kelch repeat-containin 99.5 1.4E-12 3.1E-17 142.8 23.6 255 61-417 58-333 (482)
25 KOG0379 Kelch repeat-containin 99.4 3.8E-11 8.2E-16 131.6 20.0 211 130-426 60-287 (482)
26 KOG1230 Protein containing rep 99.1 5.4E-09 1.2E-13 107.4 17.4 229 141-451 79-338 (521)
27 COG3055 Uncharacterized protei 99.0 3.5E-08 7.5E-13 100.3 19.7 244 49-379 67-361 (381)
28 KOG4152 Host cell transcriptio 99.0 2.2E-08 4.8E-13 105.0 17.9 272 49-377 14-342 (830)
29 KOG1230 Protein containing rep 99.0 9.4E-09 2E-13 105.7 14.5 196 51-265 107-345 (521)
30 KOG4152 Host cell transcriptio 98.9 2.1E-08 4.6E-13 105.2 16.3 267 117-424 15-342 (830)
31 COG3055 Uncharacterized protei 98.9 1.4E-07 3.1E-12 95.9 20.2 255 123-427 29-362 (381)
32 PF07250 Glyoxal_oxid_N: Glyox 98.7 2.2E-07 4.8E-12 92.2 14.6 129 254-423 48-189 (243)
33 PF13964 Kelch_6: Kelch motif 98.4 4.6E-07 9.9E-12 67.5 5.1 47 356-403 1-50 (50)
34 PF13964 Kelch_6: Kelch motif 98.4 5.3E-07 1.1E-11 67.2 4.5 46 131-180 2-50 (50)
35 smart00612 Kelch Kelch domain. 98.1 4.9E-06 1.1E-10 60.3 4.9 45 142-191 1-47 (47)
36 PF01344 Kelch_1: Kelch motif; 97.9 1.7E-05 3.8E-10 57.9 5.0 45 64-127 2-46 (47)
37 smart00612 Kelch Kelch domain. 97.9 1.3E-05 2.8E-10 58.0 3.9 43 369-411 1-45 (47)
38 PF01344 Kelch_1: Kelch motif; 97.7 1.3E-05 2.8E-10 58.6 1.5 43 131-177 2-47 (47)
39 PF07646 Kelch_2: Kelch motif; 97.7 0.0001 2.3E-09 54.5 6.0 47 64-127 2-48 (49)
40 PF13415 Kelch_3: Galactose ox 97.5 0.00013 2.8E-09 54.0 4.7 44 140-187 1-48 (49)
41 PF13415 Kelch_3: Galactose ox 97.5 0.00011 2.4E-09 54.4 4.2 44 367-410 1-48 (49)
42 PF13418 Kelch_4: Galactose ox 97.5 5.6E-05 1.2E-09 55.8 1.8 45 356-400 1-48 (49)
43 PF13418 Kelch_4: Galactose ox 97.3 0.00048 1E-08 50.8 4.9 38 234-272 3-48 (49)
44 PF07646 Kelch_2: Kelch motif; 97.3 0.00037 8.1E-09 51.5 4.0 42 131-176 2-48 (49)
45 PRK11138 outer membrane biogen 96.5 1.5 3.3E-05 46.9 27.6 272 52-422 46-343 (394)
46 PLN02772 guanylate kinase 96.5 0.0062 1.3E-07 64.6 7.4 68 130-200 24-96 (398)
47 PLN02772 guanylate kinase 96.5 0.0057 1.2E-07 64.9 6.7 66 356-423 24-95 (398)
48 PRK13684 Ycf48-like protein; P 96.3 1.7 3.8E-05 45.6 29.3 74 345-423 245-322 (334)
49 KOG0286 G-protein beta subunit 96.1 1.8 3.9E-05 43.9 23.5 243 111-422 79-334 (343)
50 PRK11138 outer membrane biogen 95.6 3.9 8.5E-05 43.7 24.4 240 110-422 131-384 (394)
51 PF13088 BNR_2: BNR repeat-lik 94.4 3.3 7.2E-05 41.6 18.2 78 342-419 190-275 (275)
52 COG4257 Vgb Streptogramin lyas 94.1 7.4 0.00016 39.5 21.2 224 111-416 85-327 (353)
53 KOG0310 Conserved WD40 repeat- 94.1 6.5 0.00014 42.4 19.7 244 109-425 48-301 (487)
54 PF14870 PSII_BNR: Photosynthe 93.4 1.6 3.5E-05 45.1 13.6 160 52-254 134-297 (302)
55 TIGR01640 F_box_assoc_1 F-box 92.7 2.9 6.3E-05 41.1 13.9 143 109-262 70-230 (230)
56 PF14870 PSII_BNR: Photosynthe 92.6 15 0.00032 38.2 19.6 241 117-424 4-253 (302)
57 TIGR03300 assembly_YfgL outer 92.3 17 0.00037 38.4 23.8 53 111-171 77-131 (377)
58 PF13854 Kelch_5: Kelch motif 92.2 0.15 3.2E-06 36.3 3.0 24 353-377 1-24 (42)
59 PRK13684 Ycf48-like protein; P 92.2 8.3 0.00018 40.5 17.4 123 115-254 200-324 (334)
60 PF13854 Kelch_5: Kelch motif 91.9 0.17 3.7E-06 36.0 2.9 23 177-200 2-24 (42)
61 TIGR03866 PQQ_ABC_repeats PQQ- 91.7 15 0.00032 36.4 27.4 133 110-265 12-150 (300)
62 KOG0310 Conserved WD40 repeat- 90.4 30 0.00065 37.5 18.8 38 336-377 262-300 (487)
63 PRK11028 6-phosphogluconolacto 90.2 25 0.00054 36.3 27.3 138 111-262 14-158 (330)
64 KOG2437 Muskelin [Signal trans 90.2 0.31 6.8E-06 52.5 4.1 114 62-200 259-395 (723)
65 cd00200 WD40 WD40 domain, foun 89.7 19 0.00041 34.3 25.9 133 111-264 33-169 (289)
66 PF08450 SGL: SMP-30/Gluconola 89.7 22 0.00047 35.0 19.0 75 110-196 23-102 (246)
67 PF08450 SGL: SMP-30/Gluconola 89.6 12 0.00026 36.9 14.9 143 112-268 63-220 (246)
68 PF07893 DUF1668: Protein of u 88.1 17 0.00036 38.4 15.4 60 65-150 68-127 (342)
69 PF07893 DUF1668: Protein of u 87.4 9.7 0.00021 40.2 13.1 118 139-266 75-213 (342)
70 KOG2437 Muskelin [Signal trans 86.4 0.66 1.4E-05 50.1 3.6 131 52-200 298-457 (723)
71 TIGR01640 F_box_assoc_1 F-box 86.3 16 0.00034 35.8 13.3 151 243-422 5-161 (230)
72 PF10282 Lactonase: Lactonase, 85.9 49 0.0011 34.7 24.1 262 110-423 16-311 (345)
73 PRK11028 6-phosphogluconolacto 85.5 47 0.001 34.2 30.2 92 111-207 59-153 (330)
74 TIGR03300 assembly_YfgL outer 84.1 60 0.0013 34.2 24.5 54 110-171 116-171 (377)
75 TIGR03866 PQQ_ABC_repeats PQQ- 83.4 49 0.0011 32.6 26.0 132 111-265 55-192 (300)
76 PF13088 BNR_2: BNR repeat-lik 80.2 8.8 0.00019 38.4 8.9 120 52-195 145-275 (275)
77 COG4257 Vgb Streptogramin lyas 80.0 75 0.0016 32.5 16.0 141 110-279 125-279 (353)
78 KOG0278 Serine/threonine kinas 78.4 52 0.0011 33.1 12.9 55 238-316 190-245 (334)
79 PF03089 RAG2: Recombination a 78.2 51 0.0011 33.7 13.0 100 306-419 164-280 (337)
80 PLN00033 photosystem II stabil 77.5 1E+02 0.0022 33.2 16.3 122 113-254 264-392 (398)
81 KOG0296 Angio-associated migra 76.0 88 0.0019 33.0 14.3 132 111-265 88-225 (399)
82 PTZ00421 coronin; Provisional 74.9 1.4E+02 0.003 33.2 17.0 50 110-162 149-198 (493)
83 cd00200 WD40 WD40 domain, foun 73.9 82 0.0018 29.8 22.1 134 111-265 75-212 (289)
84 PLN00181 protein SPA1-RELATED; 73.9 1.9E+02 0.0041 34.0 21.6 25 135-162 489-513 (793)
85 KOG0286 G-protein beta subunit 70.8 1.3E+02 0.0029 30.9 22.3 206 110-377 120-336 (343)
86 KOG0278 Serine/threonine kinas 70.1 54 0.0012 32.9 10.7 93 153-265 164-259 (334)
87 PF12768 Rax2: Cortical protei 69.6 37 0.0008 34.8 10.1 98 51-174 25-130 (281)
88 KOG0279 G protein beta subunit 69.3 1.1E+02 0.0025 31.1 12.9 137 110-263 86-225 (315)
89 KOG0271 Notchless-like WD40 re 67.7 20 0.00043 37.9 7.6 51 110-163 138-188 (480)
90 PF13360 PQQ_2: PQQ-like domai 67.5 92 0.002 29.9 12.3 137 241-424 34-183 (238)
91 PTZ00420 coronin; Provisional 66.4 1.7E+02 0.0036 33.2 15.3 135 110-263 149-296 (568)
92 PLN00033 photosystem II stabil 64.6 2.1E+02 0.0046 30.9 31.2 69 348-423 318-390 (398)
93 PF12768 Rax2: Cortical protei 61.2 39 0.00084 34.7 8.4 62 109-174 16-81 (281)
94 PF13360 PQQ_2: PQQ-like domai 58.2 1.7E+02 0.0038 27.9 18.5 143 110-265 47-198 (238)
95 PLN00181 protein SPA1-RELATED; 57.7 3.8E+02 0.0082 31.6 22.9 87 110-207 556-645 (793)
96 KOG2055 WD40 repeat protein [G 56.2 1.9E+02 0.0042 31.5 12.5 130 110-261 281-418 (514)
97 PF15418 DUF4625: Domain of un 54.6 1.1E+02 0.0023 27.7 9.2 91 456-551 13-115 (132)
98 PRK04792 tolB translocation pr 54.5 2.3E+02 0.005 30.9 13.7 92 109-207 286-377 (448)
99 KOG0291 WD40-repeat-containing 54.2 4.1E+02 0.0089 30.9 24.2 50 110-162 331-380 (893)
100 KOG0649 WD40 repeat protein [G 53.4 2.5E+02 0.0055 28.3 13.8 126 111-259 138-273 (325)
101 PRK03629 tolB translocation pr 52.9 3.3E+02 0.0071 29.4 18.8 138 110-265 224-368 (429)
102 KOG0303 Actin-binding protein 52.2 1.8E+02 0.0039 31.1 11.4 82 109-200 154-237 (472)
103 PF03089 RAG2: Recombination a 49.9 47 0.001 34.0 6.5 86 59-150 83-174 (337)
104 PRK04792 tolB translocation pr 49.5 3.8E+02 0.0083 29.2 17.4 137 110-265 243-387 (448)
105 COG1520 FOG: WD40-like repeat 48.3 1.3E+02 0.0029 31.6 10.3 79 111-197 80-160 (370)
106 KOG0272 U4/U6 small nuclear ri 48.3 2.2E+02 0.0047 30.8 11.3 87 111-207 327-415 (459)
107 COG2706 3-carboxymuconate cycl 46.6 2.4E+02 0.0053 29.7 11.3 95 107-207 213-318 (346)
108 PF07433 DUF1513: Protein of u 46.3 2E+02 0.0044 29.8 10.7 105 66-199 7-120 (305)
109 TIGR03075 PQQ_enz_alc_DH PQQ-d 45.9 1.8E+02 0.0038 32.7 11.2 59 336-394 132-196 (527)
110 KOG0263 Transcription initiati 45.9 75 0.0016 36.4 8.1 98 35-162 543-649 (707)
111 cd00216 PQQ_DH Dehydrogenases 45.8 3.9E+02 0.0084 29.5 13.9 25 241-265 59-86 (488)
112 KOG1036 Mitotic spindle checkp 45.6 3.7E+02 0.008 27.9 13.2 84 110-207 76-160 (323)
113 PF06433 Me-amine-dh_H: Methyl 45.2 2.3E+02 0.0049 30.0 10.9 138 109-268 118-285 (342)
114 COG3490 Uncharacterized protei 45.1 84 0.0018 32.3 7.5 89 354-448 110-203 (366)
115 PF10282 Lactonase: Lactonase, 44.8 1.5E+02 0.0032 31.0 9.9 92 112-207 219-319 (345)
116 TIGR02608 delta_60_rpt delta-6 43.9 22 0.00048 27.0 2.5 17 408-424 5-21 (55)
117 TIGR02800 propeller_TolB tol-p 42.4 4.4E+02 0.0094 27.8 18.1 138 110-265 215-359 (417)
118 PRK01742 tolB translocation pr 42.3 2.4E+02 0.0053 30.4 11.4 134 110-265 229-366 (429)
119 PF13540 RCC1_2: Regulator of 42.2 31 0.00066 22.5 2.7 22 404-426 8-29 (30)
120 KOG0271 Notchless-like WD40 re 41.7 1.5E+02 0.0033 31.6 8.9 106 137-265 123-240 (480)
121 KOG2055 WD40 repeat protein [G 41.7 5.1E+02 0.011 28.4 15.5 110 139-265 223-338 (514)
122 PRK05137 tolB translocation pr 41.4 4.8E+02 0.01 28.1 18.4 81 110-197 227-307 (435)
123 TIGR02800 propeller_TolB tol-p 41.0 3.9E+02 0.0085 28.2 12.7 91 110-207 259-349 (417)
124 KOG0299 U3 snoRNP-associated p 39.6 2.9E+02 0.0064 30.1 10.8 61 184-259 291-353 (479)
125 PRK03629 tolB translocation pr 39.4 4.1E+02 0.0089 28.7 12.6 84 110-200 268-351 (429)
126 PTZ00421 coronin; Provisional 39.2 4E+02 0.0086 29.6 12.5 53 110-162 191-245 (493)
127 TIGR03075 PQQ_enz_alc_DH PQQ-d 38.4 1.8E+02 0.004 32.5 9.9 57 135-196 115-171 (527)
128 KOG0266 WD40 repeat-containing 36.1 4.1E+02 0.009 29.0 12.1 136 110-263 269-412 (456)
129 PRK05137 tolB translocation pr 35.8 5.9E+02 0.013 27.4 13.5 82 110-198 271-352 (435)
130 KOG0315 G-protein beta subunit 35.4 4.9E+02 0.011 26.4 17.5 53 107-162 59-113 (311)
131 KOG1427 Uncharacterized conser 35.3 1.5E+02 0.0032 30.7 7.4 137 359-518 68-215 (443)
132 PRK01029 tolB translocation pr 35.1 1.8E+02 0.0039 31.6 9.0 60 109-172 351-410 (428)
133 PF07433 DUF1513: Protein of u 34.5 5.5E+02 0.012 26.7 14.1 101 239-375 11-118 (305)
134 PF00868 Transglut_N: Transglu 34.4 3.2E+02 0.0069 24.0 10.0 76 468-550 27-115 (118)
135 PLN02919 haloacid dehalogenase 32.1 3.7E+02 0.008 33.1 11.7 65 136-207 810-885 (1057)
136 PRK04922 tolB translocation pr 31.9 5.4E+02 0.012 27.7 12.1 81 110-198 317-397 (433)
137 PRK00178 tolB translocation pr 31.6 6.6E+02 0.014 26.8 18.7 138 110-265 224-368 (430)
138 KOG1036 Mitotic spindle checkp 31.6 4.6E+02 0.01 27.2 10.3 87 110-209 117-209 (323)
139 TIGR02658 TTQ_MADH_Hv methylam 31.5 5.3E+02 0.012 27.4 11.4 36 234-269 47-94 (352)
140 PRK02889 tolB translocation pr 30.7 7E+02 0.015 26.8 18.0 137 110-265 221-365 (427)
141 KOG0291 WD40-repeat-containing 30.6 3.7E+02 0.0081 31.3 10.3 81 110-198 459-539 (893)
142 PTZ00420 coronin; Provisional 30.2 3.7E+02 0.0079 30.6 10.5 53 110-162 190-248 (568)
143 KOG0263 Transcription initiati 29.9 2E+02 0.0043 33.2 8.1 88 110-207 558-646 (707)
144 PF08662 eIF2A: Eukaryotic tra 29.3 1.6E+02 0.0036 28.0 6.7 79 110-198 84-162 (194)
145 PRK00178 tolB translocation pr 28.0 7.6E+02 0.016 26.3 13.4 82 110-199 312-393 (430)
146 KOG0316 Conserved WD40 repeat- 27.2 3.7E+02 0.0081 27.0 8.5 90 109-207 81-170 (307)
147 COG1520 FOG: WD40-like repeat 27.0 6.2E+02 0.013 26.5 11.3 83 336-422 165-252 (370)
148 PRK04922 tolB translocation pr 26.1 8.4E+02 0.018 26.2 17.6 138 110-265 229-373 (433)
149 PF10342 GPI-anchored: Ser-Thr 25.8 3.6E+02 0.0077 21.8 9.9 72 468-551 7-78 (93)
150 PF07705 CARDB: CARDB; InterP 25.8 3.6E+02 0.0078 21.8 8.2 74 459-551 7-83 (101)
151 PRK02889 tolB translocation pr 25.7 8.5E+02 0.019 26.1 12.4 84 109-199 264-347 (427)
152 PF08950 DUF1861: Protein of u 25.5 2.5E+02 0.0054 28.7 7.2 103 68-197 31-146 (298)
153 COG3490 Uncharacterized protei 25.1 4.1E+02 0.0089 27.5 8.6 84 110-197 92-179 (366)
154 cd02849 CGTase_C_term Cgtase ( 24.1 4E+02 0.0086 21.7 8.9 74 457-559 2-77 (81)
155 KOG0641 WD40 repeat protein [G 24.0 7.2E+02 0.016 24.7 15.2 30 237-266 236-267 (350)
156 KOG0639 Transducin-like enhanc 24.0 4.4E+02 0.0095 29.3 9.0 95 306-423 476-571 (705)
157 PRK02655 psbI photosystem II r 23.5 34 0.00073 23.6 0.5 23 2-24 3-25 (38)
158 CHL00024 psbI photosystem II p 23.1 33 0.00071 23.5 0.4 23 2-24 3-25 (36)
159 COG5184 ATS1 Alpha-tubulin sup 22.4 1.1E+03 0.023 26.1 18.1 106 359-481 350-463 (476)
160 COG4447 Uncharacterized protei 21.3 9.2E+02 0.02 24.9 10.4 168 52-261 158-333 (339)
161 smart00155 PLDc Phospholipase 20.7 1E+02 0.0023 19.4 2.4 22 357-378 3-24 (28)
162 KOG0639 Transducin-like enhanc 20.2 1.9E+02 0.0042 31.9 5.5 104 69-207 472-578 (705)
163 KOG0266 WD40 repeat-containing 20.0 1.1E+03 0.025 25.5 23.3 230 136-449 166-411 (456)
No 1
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=100.00 E-value=2e-45 Score=361.56 Aligned_cols=238 Identities=54% Similarity=0.998 Sum_probs=212.2
Q ss_pred eEEEEeeCCeEEEEeccCCCCCCCCCCCCccccCC--CCCCCcccceEEEEECCCCcEEeCcCCCcccccCCeecCCCcE
Q 048017 66 MHMQVLNNDKVIIFDRTDMGPSNLSLPIDKCRKEG--DVGQLDCTAHSVLYDIASNTFRPLLLQTDTWCSSGAVLSDGTL 143 (566)
Q Consensus 66 ~h~~~l~~gkV~~~gg~~~~~s~~~~p~G~~~~~~--~~~~~~~~~~~~~yDp~t~~w~~l~~~~~~~c~~~~~l~dG~l 143 (566)
||++++++|||+++++.+.|+|++++|+|+||.+. ...+.||++++.+||+.|++++++...++.||+++++|+||++
T Consensus 1 mh~~~~~~~~v~~~d~t~~g~s~~~~~~~~c~~~~~~~~~~~d~~a~s~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~l 80 (243)
T PF07250_consen 1 MHMALLHNNKVIMFDRTNFGPSNISLPDGRCRDNPEDNALKFDGPAHSVEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRL 80 (243)
T ss_pred CeEeEccCCEEEEEeCCCcccccccCCCCccccCccccccccCceEEEEEEecCCCcEEeccCCCCCcccCcCCCCCCCE
Confidence 79999999999999999999999999999999866 5677889999999999999999999999999999999999999
Q ss_pred EEEcCCCCCCCeEEEEcCCC-CCCCcccccCcccccccCcceEEEecCCcEEEEcCccCCeEEEEeCCCCCCCeeeeccc
Q 048017 144 VQTGGYNVGDRVIRLFTPCN-DEGCDWVELSKNLWDRRWYASNQILPDNRIIVVGGRRVFTYEFYPKIDSLSSSLYLRFL 222 (566)
Q Consensus 144 ~vvGG~~~g~~~v~~ydP~~-~~t~~W~~~~~~M~~~R~y~s~~~L~dG~VyvvGG~~~~s~E~yP~~~~~~~w~~~p~l 222 (566)
+++||+.+|.+.++.|+|+. +++++|.+.+..|..+|||+++++|+||+|+|+||+..+++|+||+.........++++
T Consensus 81 l~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L~DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l 160 (243)
T PF07250_consen 81 LQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTLPDGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFL 160 (243)
T ss_pred EEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceECCCCCEEEEeCcCCCcccccCCccCCCCceeeecc
Confidence 99999998999999999995 34689999876699999999999999999999999999999999764212233455666
Q ss_pred cccCCCCCCCCccceEEEecCCcEEEEEcCeeEEEeccCCeEEEeecccCCCCCCccCCCCceeeecc--cccCCCCCCC
Q 048017 223 IETRDPGEENNLYPFLHLLPDGNLFIFANRRSILFDYINNKLVKEFPVIPGNDKRNYPSTGSSILLPV--KLSAGSDGNG 300 (566)
Q Consensus 223 ~~~~d~~~~~~~yp~~~~l~~G~Ifv~Gg~~~e~yDp~t~~W~~~~p~lp~~~~r~~~~~g~avllpl--~~~~~~~~~~ 300 (566)
..+.+ ..+.++||+++++|||+||+++++.+++||++++++.+.+|.||++ .|.||.+|++||||| .+. |.
T Consensus 161 ~~~~~-~~~~nlYP~~~llPdG~lFi~an~~s~i~d~~~n~v~~~lP~lPg~-~R~YP~sgssvmLPl~~~~~-----~~ 233 (243)
T PF07250_consen 161 SQTSD-TLPNNLYPFVHLLPDGNLFIFANRGSIIYDYKTNTVVRTLPDLPGG-PRNYPASGSSVMLPLTDTPP-----NN 233 (243)
T ss_pred hhhhc-cCccccCceEEEcCCCCEEEEEcCCcEEEeCCCCeEEeeCCCCCCC-ceecCCCcceEEecCccCCC-----CC
Confidence 65544 2578999999999999999999999999999999987789999988 899999999999999 543 45
Q ss_pred CCCCCCCEEEEEcC
Q 048017 301 TAALPDAEVMVCGG 314 (566)
Q Consensus 301 y~~~~~gkI~v~GG 314 (566)
| ..+|+||||
T Consensus 234 ~----~~evlvCGG 243 (243)
T PF07250_consen 234 Y----TAEVLVCGG 243 (243)
T ss_pred C----CeEEEEeCC
Confidence 5 799999998
No 2
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=100.00 E-value=1.9e-36 Score=335.19 Aligned_cols=265 Identities=19% Similarity=0.302 Sum_probs=220.4
Q ss_pred eCCeEEEEeccCCCCCCCCCCCCccccCCCCCCCcccceEEEEECCCCcEEeCcCCCcccccCCeecCCCcEEEEcCCCC
Q 048017 72 NNDKVIIFDRTDMGPSNLSLPIDKCRKEGDVGQLDCTAHSVLYDIASNTFRPLLLQTDTWCSSGAVLSDGTLVQTGGYNV 151 (566)
Q Consensus 72 ~~gkV~~~gg~~~~~s~~~~p~G~~~~~~~~~~~~~~~~~~~yDp~t~~w~~l~~~~~~~c~~~~~l~dG~l~vvGG~~~ 151 (566)
..+++|++||... + +. ....+++|||.+++|..++.++.++|..+++..+|+||++||++.
T Consensus 283 ~~~~l~~vGG~~~--~------~~-----------~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~~~~lYv~GG~~~ 343 (571)
T KOG4441|consen 283 VSGKLVAVGGYNR--Q------GQ-----------SLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVLNGKLYVVGGYDS 343 (571)
T ss_pred CCCeEEEECCCCC--C------Cc-----------ccceeEEecCCcCcEeecCCCCcccccccEEEECCEEEEEccccC
Confidence 4688999999862 1 11 134689999999999999999999999999999999999999973
Q ss_pred ---CCCeEEEEcCCCCCCCcccccCcccccccCcceEEEecCCcEEEEcCccC----CeEEEE-eCCCCCCCee-eeccc
Q 048017 152 ---GDRVIRLFTPCNDEGCDWVELSKNLWDRRWYASNQILPDNRIIVVGGRRV----FTYEFY-PKIDSLSSSL-YLRFL 222 (566)
Q Consensus 152 ---g~~~v~~ydP~~~~t~~W~~~~~~M~~~R~y~s~~~L~dG~VyvvGG~~~----~s~E~y-P~~~~~~~w~-~~p~l 222 (566)
..+++++|||. +++|+.+++ |+.+|..++++++ +|+||++||.++ .++|+| |.++ .|. ..||+
T Consensus 344 ~~~~l~~ve~YD~~---~~~W~~~a~-M~~~R~~~~v~~l-~g~iYavGG~dg~~~l~svE~YDp~~~---~W~~va~m~ 415 (571)
T KOG4441|consen 344 GSDRLSSVERYDPR---TNQWTPVAP-MNTKRSDFGVAVL-DGKLYAVGGFDGEKSLNSVECYDPVTN---KWTPVAPML 415 (571)
T ss_pred CCcccceEEEecCC---CCceeccCC-ccCccccceeEEE-CCEEEEEeccccccccccEEEecCCCC---cccccCCCC
Confidence 35899999999 899999998 9999999999999 899999999986 379999 9886 786 45676
Q ss_pred cccCCCCCCCCccceEEEecCCcEEEEEc--------CeeEEEeccCCeEEEeecccCCCCCCccCCCCceeeecccccC
Q 048017 223 IETRDPGEENNLYPFLHLLPDGNLFIFAN--------RRSILFDYINNKLVKEFPVIPGNDKRNYPSTGSSILLPVKLSA 294 (566)
Q Consensus 223 ~~~~d~~~~~~~yp~~~~l~~G~Ifv~Gg--------~~~e~yDp~t~~W~~~~p~lp~~~~r~~~~~g~avllpl~~~~ 294 (566)
.. .+-++++..+|+||++|| +++|+|||.+|+|. .+|+|+ .+|.+ .|++++
T Consensus 416 ~~---------r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~-~~~~M~--~~R~~--~g~a~~------- 474 (571)
T KOG4441|consen 416 TR---------RSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWT-LIAPMN--TRRSG--FGVAVL------- 474 (571)
T ss_pred cc---------eeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCcee-ecCCcc--ccccc--ceEEEE-------
Confidence 53 245677888999999999 36899999999998 688554 45776 356665
Q ss_pred CCCCCCCCCCCCCEEEEEcCCCCCccccccccccccccCCeeEEEEeeCCCCCeEEe-ccCCCcccceeEEccCCeEEEE
Q 048017 295 GSDGNGTAALPDAEVMVCGGAPAGAFIKSDKESVYVEASRTCGRLKVTDKYPVWSME-FMPMPRVMSDMLLLPSGDVIII 373 (566)
Q Consensus 295 ~~~~~~y~~~~~gkI~v~GG~~~~~~~~~~~~~~~~pa~~s~~~~d~~~~~~~W~~~-~M~~~R~~~~~vvLpdG~V~vv 373 (566)
+++||++||.++ . -.+.++|+|||. .++|+.. +|..+|..++.+++ ++++|++
T Consensus 475 -----------~~~iYvvGG~~~-~-----------~~~~~VE~ydp~--~~~W~~v~~m~~~rs~~g~~~~-~~~ly~v 528 (571)
T KOG4441|consen 475 -----------NGKIYVVGGFDG-T-----------SALSSVERYDPE--TNQWTMVAPMTSPRSAVGVVVL-GGKLYAV 528 (571)
T ss_pred -----------CCEEEEECCccC-C-----------CccceEEEEcCC--CCceeEcccCccccccccEEEE-CCEEEEE
Confidence 899999999874 1 135779999998 5999998 89999999887666 9999999
Q ss_pred cCCCCCCCC--CccccCc-CCcEEeccCCCCCCcceeEEEE
Q 048017 374 NGASNGTAG--WEDAEEP-DRRFVVLNPSKIPRMYHSSAVV 411 (566)
Q Consensus 374 GG~~~g~~~--~~~~ydP-t~~Wt~~~~~~~~R~yhs~a~L 411 (566)
||.+ |... ..++||| +|+|+...+|...|...+++++
T Consensus 529 GG~~-~~~~l~~ve~ydp~~d~W~~~~~~~~~~~~~~~~~~ 568 (571)
T KOG4441|consen 529 GGFD-GNNNLNTVECYDPETDTWTEVTEPESGRGGAGVAVI 568 (571)
T ss_pred eccc-CccccceeEEcCCCCCceeeCCCccccccCcceEEe
Confidence 9976 4332 2368999 9999999888888888877765
No 3
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=100.00 E-value=2.6e-33 Score=310.32 Aligned_cols=245 Identities=20% Similarity=0.359 Sum_probs=200.8
Q ss_pred CCCcEEEEcCCCC---CCCeEEEEcCCCCCCCcccccCcccccccCcceEEEecCCcEEEEcCcc-C----CeEEEE-eC
Q 048017 139 SDGTLVQTGGYNV---GDRVIRLFTPCNDEGCDWVELSKNLWDRRWYASNQILPDNRIIVVGGRR-V----FTYEFY-PK 209 (566)
Q Consensus 139 ~dG~l~vvGG~~~---g~~~v~~ydP~~~~t~~W~~~~~~M~~~R~y~s~~~L~dG~VyvvGG~~-~----~s~E~y-P~ 209 (566)
..+.|+++||... ..+.+++|||. +++|..+++ |+.+|..++++++ +|+|||+||.+ + .++|+| |.
T Consensus 283 ~~~~l~~vGG~~~~~~~~~~ve~yd~~---~~~w~~~a~-m~~~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~ 357 (571)
T KOG4441|consen 283 VSGKLVAVGGYNRQGQSLRSVECYDPK---TNEWSSLAP-MPSPRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPR 357 (571)
T ss_pred CCCeEEEECCCCCCCcccceeEEecCC---cCcEeecCC-CCcccccccEEEE-CCEEEEEccccCCCcccceEEEecCC
Confidence 3588999999873 36899999999 899999998 9999999999999 89999999998 3 378999 98
Q ss_pred CCCCCCeee-eccccccCCCCCCCCccceEEEecCCcEEEEEcC-------eeEEEeccCCeEEEeecccCCCCCCccCC
Q 048017 210 IDSLSSSLY-LRFLIETRDPGEENNLYPFLHLLPDGNLFIFANR-------RSILFDYINNKLVKEFPVIPGNDKRNYPS 281 (566)
Q Consensus 210 ~~~~~~w~~-~p~l~~~~d~~~~~~~yp~~~~l~~G~Ifv~Gg~-------~~e~yDp~t~~W~~~~p~lp~~~~r~~~~ 281 (566)
++ +|.. .||...|.+ +.++..+|+||++||. ++|+|||.+|+|. ..++|+. +|..
T Consensus 358 ~~---~W~~~a~M~~~R~~---------~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~-~va~m~~--~r~~-- 420 (571)
T KOG4441|consen 358 TN---QWTPVAPMNTKRSD---------FGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWT-PVAPMLT--RRSG-- 420 (571)
T ss_pred CC---ceeccCCccCcccc---------ceeEEECCEEEEEeccccccccccEEEecCCCCccc-ccCCCCc--ceee--
Confidence 86 6875 566655432 4566789999999995 4899999999998 5775543 4554
Q ss_pred CCceeeecccccCCCCCCCCCCCCCCEEEEEcCCCCCccccccccccccccCCeeEEEEeeCCCCCeEEe-ccCCCcccc
Q 048017 282 TGSSILLPVKLSAGSDGNGTAALPDAEVMVCGGAPAGAFIKSDKESVYVEASRTCGRLKVTDKYPVWSME-FMPMPRVMS 360 (566)
Q Consensus 282 ~g~avllpl~~~~~~~~~~y~~~~~gkI~v~GG~~~~~~~~~~~~~~~~pa~~s~~~~d~~~~~~~W~~~-~M~~~R~~~ 360 (566)
.|++++ +|+||++||.+... -.++++|+|||. +++|+.. +|+.+|.++
T Consensus 421 ~gv~~~------------------~g~iYi~GG~~~~~-----------~~l~sve~YDP~--t~~W~~~~~M~~~R~~~ 469 (571)
T KOG4441|consen 421 HGVAVL------------------GGKLYIIGGGDGSS-----------NCLNSVECYDPE--TNTWTLIAPMNTRRSGF 469 (571)
T ss_pred eEEEEE------------------CCEEEEEcCcCCCc-----------cccceEEEEcCC--CCceeecCCcccccccc
Confidence 355554 89999999987432 147899999998 5999998 999999999
Q ss_pred eeEEccCCeEEEEcCCCCCCCCC--ccccCc-CCcEEeccCCCCCCcceeEEEEcCCCcEEEecCCCCcccccCCCCCCC
Q 048017 361 DMLLLPSGDVIIINGASNGTAGW--EDAEEP-DRRFVVLNPSKIPRMYHSSAVVLPDGRILVGGSNPHRRYNFTAYPYPT 437 (566)
Q Consensus 361 ~~vvLpdG~V~vvGG~~~g~~~~--~~~ydP-t~~Wt~~~~~~~~R~yhs~a~LlpdG~V~v~GG~~~~~~~~~~~~~~~ 437 (566)
+++++ +|+||++||.+ +.... .++||| +++|+.+++|+.+|..++++++ ++++|+.||..... .
T Consensus 470 g~a~~-~~~iYvvGG~~-~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~~~~--~~~ly~vGG~~~~~---------~ 536 (571)
T KOG4441|consen 470 GVAVL-NGKIYVVGGFD-GTSALSSVERYDPETNQWTMVAPMTSPRSAVGVVVL--GGKLYAVGGFDGNN---------N 536 (571)
T ss_pred eEEEE-CCEEEEECCcc-CCCccceEEEEcCCCCceeEcccCccccccccEEEE--CCEEEEEecccCcc---------c
Confidence 98777 99999999988 43322 378999 9999999999999999998888 99999999954432 3
Q ss_pred cceEEEEecccc
Q 048017 438 DLSLEAFHPHYL 449 (566)
Q Consensus 438 ~~~vE~y~Ppyl 449 (566)
..++|+|+|..=
T Consensus 537 l~~ve~ydp~~d 548 (571)
T KOG4441|consen 537 LNTVECYDPETD 548 (571)
T ss_pred cceeEEcCCCCC
Confidence 458999988763
No 4
>cd02851 Galactose_oxidase_C_term Galactose oxidase C-terminus domain. Galactose oxidase is an extracellular monomeric enzyme which catalyses the stereospecific oxidation of a broad range of primary alcohol substrates and possesses a unique mononuclear copper site essential for catalysing a two-electron transfer reaction during the oxidation of primary alcohols to corresponding aldehydes. The second redox active center necessary for the reaction was found to be situated at a tyrosine residue. The C-terminus of galactose oxidase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=100.00 E-value=2.3e-34 Score=244.90 Aligned_cols=100 Identities=32% Similarity=0.428 Sum_probs=89.3
Q ss_pred CCCCCCCceeecCCccceeecCCeEEEEEEecCCCCCcceEEEEEccCccccCCCCCcceEEeeeeeeeecccceEEEEE
Q 048017 452 ENAYMRPSILSLESIDRTVSYNEVFAVTFELSSYSPSGEISVSLMTPSFTTHSFAMNQRLVVLNVVSVSQLSVYAYKVVV 531 (566)
Q Consensus 452 ~~~~~RP~i~~~p~~~~~~~~g~~~~v~~~~~~~~~~~~~~v~l~~~~~~THs~n~~QR~v~L~~~~~~~~g~~~~~~~v 531 (566)
|++|.||+|+++|. .+++||++|+|+++. .+.+|+|+|++|+|||+|||||+|+|+++. +.+ ..+++
T Consensus 1 g~~a~RP~I~~~p~--~~i~yG~~f~v~~~~------~i~~v~Lvr~~~~THs~~~~QR~v~L~~~~--~~~---~~~~v 67 (101)
T cd02851 1 GTLASRPVITSAST--QTAKVGDTITVSTDS------PISSASLVRYGSATHTVNTDQRRIPLTLFS--VGG---NSYSV 67 (101)
T ss_pred CCCCCCCeeccCCc--cccccCCEEEEEEec------cceEEEEEecccccccccCCccEEEeeeEe--cCC---CEEEE
Confidence 46789999999995 679999999999872 589999999999999999999999999975 223 46778
Q ss_pred EcCCCCCcCCCcceEEEEEc-CCCCcccEEEEEE
Q 048017 532 NGPPTATVAPPGYYMMFVVH-AGIPSHAVWVKVT 564 (566)
Q Consensus 532 ~~P~~~~~~ppG~ymlfv~~-~gvPS~a~~v~v~ 564 (566)
++|+|++|||||||||||++ +||||+|+||+|+
T Consensus 68 ~~P~n~~vaPPGyYmLFvv~~~GvPS~a~wV~i~ 101 (101)
T cd02851 68 QIPSDPGVALPGYYMLFVMNSAGVPSVAKTIRIT 101 (101)
T ss_pred EcCCCCCcCCCcCeEEEEECCCCcccccEEEEeC
Confidence 88999999999999999995 9999999999985
No 5
>PF09118 DUF1929: Domain of unknown function (DUF1929); InterPro: IPR015202 This domain adopts a secondary structure consisting of a bundle of seven, mostly antiparallel, beta-strands surrounding a hydrophobic core. The 7 strands are arranged in 2 sheets, in a Greek-key topology. Their precise function, has not, as yet, been defined, though they are mostly found in sugar-utilising enzymes, such as galactose oxidase []. ; PDB: 2JKX_A 2EIC_A 1K3I_A 1GOH_A 2EIB_A 2WQ8_A 2VZ1_A 1GOF_A 2VZ3_A 1GOG_A ....
Probab=100.00 E-value=7.9e-34 Score=241.97 Aligned_cols=97 Identities=49% Similarity=0.839 Sum_probs=68.2
Q ss_pred CCceeecCCccceeecCCeEEEEEEecCCCCCcceEEEEEccCccccCCCCCcceEEeeeeeeeecccceEEEEEEcCCC
Q 048017 457 RPSILSLESIDRTVSYNEVFAVTFELSSYSPSGEISVSLMTPSFTTHSFAMNQRLVVLNVVSVSQLSVYAYKVVVNGPPT 536 (566)
Q Consensus 457 RP~i~~~p~~~~~~~~g~~~~v~~~~~~~~~~~~~~v~l~~~~~~THs~n~~QR~v~L~~~~~~~~g~~~~~~~v~~P~~ 536 (566)
||+|+++| ..+.||++|+|+++.+. ..++.+|+|+|+||+|||+|||||+|+|++.. .++ +++++++|+|
T Consensus 1 RP~i~~~p---~~i~yg~~~tv~~~~~~--~~~~~~v~L~~~~~~THs~~~~QR~v~L~~~~--~~~---~~~~v~~P~~ 70 (98)
T PF09118_consen 1 RPVITSAP---TTIKYGQTFTVTVTVPS--AASIVKVSLVRPGFVTHSFNMGQRMVELEFVS--GGG---NTVTVTAPPN 70 (98)
T ss_dssp ---EEES----SEEETT-EEEEEE--SS-----ESEEEEEE--EEETTB-SS-EEEEE-EEE--ESS---SEEEEE--S-
T ss_pred CCccccCC---CeEecCCEEEEEEECCC--ccceEEEEEEeCCcccccccCCCCEEeeeeec--CCC---CEEEEECCCC
Confidence 99999999 99999999999998654 22789999999999999999999999999943 223 6899999999
Q ss_pred CCcCCCcceEEEEEc-CCCCcccEEEEE
Q 048017 537 ATVAPPGYYMMFVVH-AGIPSHAVWVKV 563 (566)
Q Consensus 537 ~~~~ppG~ymlfv~~-~gvPS~a~~v~v 563 (566)
++|+|||||||||++ +||||+|+||+|
T Consensus 71 ~~vaPPG~YmLFvv~~~GvPS~a~wV~v 98 (98)
T PF09118_consen 71 PNVAPPGYYMLFVVNDDGVPSVAKWVQV 98 (98)
T ss_dssp TTTS-SEEEEEEEEETTS-B---EEEEE
T ss_pred CccCCCcCEEEEEEcCCCcccccEEEEC
Confidence 999999999999999 999999999997
No 6
>PHA02713 hypothetical protein; Provisional
Probab=100.00 E-value=7.9e-32 Score=299.12 Aligned_cols=235 Identities=15% Similarity=0.184 Sum_probs=186.9
Q ss_pred eEEEEECCCCcEEeCcCCCcccccCCeecCCCcEEEEcCCCC---CCCeEEEEcCCCCCCCcccccCcccccccCcceEE
Q 048017 110 HSVLYDIASNTFRPLLLQTDTWCSSGAVLSDGTLVQTGGYNV---GDRVIRLFTPCNDEGCDWVELSKNLWDRRWYASNQ 186 (566)
Q Consensus 110 ~~~~yDp~t~~w~~l~~~~~~~c~~~~~l~dG~l~vvGG~~~---g~~~v~~ydP~~~~t~~W~~~~~~M~~~R~y~s~~ 186 (566)
.+++|||.+++|+.++.++..++..+++..+++||++||... ..+++++|||. +++|.++++ |+.+|.+++++
T Consensus 273 ~v~~yd~~~~~W~~l~~mp~~r~~~~~a~l~~~IYviGG~~~~~~~~~~v~~Yd~~---~n~W~~~~~-m~~~R~~~~~~ 348 (557)
T PHA02713 273 CILVYNINTMEYSVISTIPNHIINYASAIVDNEIIIAGGYNFNNPSLNKVYKINIE---NKIHVELPP-MIKNRCRFSLA 348 (557)
T ss_pred CEEEEeCCCCeEEECCCCCccccceEEEEECCEEEEEcCCCCCCCccceEEEEECC---CCeEeeCCC-CcchhhceeEE
Confidence 478999999999999988777766666777999999999742 25789999999 899999998 99999999999
Q ss_pred EecCCcEEEEcCccC----CeEEEE-eCCCCCCCeee-eccccccCCCCCCCCccceEEEecCCcEEEEEcC--------
Q 048017 187 ILPDNRIIVVGGRRV----FTYEFY-PKIDSLSSSLY-LRFLIETRDPGEENNLYPFLHLLPDGNLFIFANR-------- 252 (566)
Q Consensus 187 ~L~dG~VyvvGG~~~----~s~E~y-P~~~~~~~w~~-~p~l~~~~d~~~~~~~yp~~~~l~~G~Ifv~Gg~-------- 252 (566)
++ +|+|||+||.++ .++|+| |.++ .|.. .||...+. . ++.+..+|+||++||.
T Consensus 349 ~~-~g~IYviGG~~~~~~~~sve~Ydp~~~---~W~~~~~mp~~r~--------~-~~~~~~~g~IYviGG~~~~~~~~~ 415 (557)
T PHA02713 349 VI-DDTIYAIGGQNGTNVERTIECYTMGDD---KWKMLPDMPIALS--------S-YGMCVLDQYIYIIGGRTEHIDYTS 415 (557)
T ss_pred EE-CCEEEEECCcCCCCCCceEEEEECCCC---eEEECCCCCcccc--------c-ccEEEECCEEEEEeCCCccccccc
Confidence 99 899999999864 368999 8875 7875 45543321 2 3345679999999984
Q ss_pred -----------------eeEEEeccCCeEEEeecccCCCCCCccCCCCceeeecccccCCCCCCCCCCCCCCEEEEEcCC
Q 048017 253 -----------------RSILFDYINNKLVKEFPVIPGNDKRNYPSTGSSILLPVKLSAGSDGNGTAALPDAEVMVCGGA 315 (566)
Q Consensus 253 -----------------~~e~yDp~t~~W~~~~p~lp~~~~r~~~~~g~avllpl~~~~~~~~~~y~~~~~gkI~v~GG~ 315 (566)
.+++|||++|+|+ .+++|+. +|.. ++++++ +++||++||.
T Consensus 416 ~~~~~~~~~~~~~~~~~~ve~YDP~td~W~-~v~~m~~--~r~~--~~~~~~------------------~~~IYv~GG~ 472 (557)
T PHA02713 416 VHHMNSIDMEEDTHSSNKVIRYDTVNNIWE-TLPNFWT--GTIR--PGVVSH------------------KDDIYVVCDI 472 (557)
T ss_pred ccccccccccccccccceEEEECCCCCeEe-ecCCCCc--cccc--CcEEEE------------------CCEEEEEeCC
Confidence 3789999999998 6886654 4654 345554 8999999997
Q ss_pred CCCccccccccccccccCCeeEEEEeeCCCCCeEEe-ccCCCcccceeEEccCCeEEEEcCCCCCCCCCccccCc-CCcE
Q 048017 316 PAGAFIKSDKESVYVEASRTCGRLKVTDKYPVWSME-FMPMPRVMSDMLLLPSGDVIIINGASNGTAGWEDAEEP-DRRF 393 (566)
Q Consensus 316 ~~~~~~~~~~~~~~~pa~~s~~~~d~~~~~~~W~~~-~M~~~R~~~~~vvLpdG~V~vvGG~~~g~~~~~~~ydP-t~~W 393 (566)
+... ...+++|+|||.. +++|+.. +|+.+|..++++++ +|+||++||.+ +.. ..++||| +++|
T Consensus 473 ~~~~-----------~~~~~ve~Ydp~~-~~~W~~~~~m~~~r~~~~~~~~-~~~iyv~Gg~~-~~~-~~e~yd~~~~~W 537 (557)
T PHA02713 473 KDEK-----------NVKTCIFRYNTNT-YNGWELITTTESRLSALHTILH-DNTIMMLHCYE-SYM-LQDTFNVYTYEW 537 (557)
T ss_pred CCCC-----------ccceeEEEecCCC-CCCeeEccccCcccccceeEEE-CCEEEEEeeec-cee-ehhhcCcccccc
Confidence 5211 1134689999972 2699998 99999999998877 99999999987 422 3579999 9999
Q ss_pred EeccCC
Q 048017 394 VVLNPS 399 (566)
Q Consensus 394 t~~~~~ 399 (566)
+.+++.
T Consensus 538 ~~~~~~ 543 (557)
T PHA02713 538 NHICHQ 543 (557)
T ss_pred cchhhh
Confidence 998875
No 7
>PHA02713 hypothetical protein; Provisional
Probab=99.97 E-value=6.4e-30 Score=283.87 Aligned_cols=250 Identities=12% Similarity=0.129 Sum_probs=185.9
Q ss_pred cEEEEcCCCC-CCCeEEEEcCCCCCCCcccccCcccccccCcceEEEecCCcEEEEcCccC-----CeEEEE-eCCCCCC
Q 048017 142 TLVQTGGYNV-GDRVIRLFTPCNDEGCDWVELSKNLWDRRWYASNQILPDNRIIVVGGRRV-----FTYEFY-PKIDSLS 214 (566)
Q Consensus 142 ~l~vvGG~~~-g~~~v~~ydP~~~~t~~W~~~~~~M~~~R~y~s~~~L~dG~VyvvGG~~~-----~s~E~y-P~~~~~~ 214 (566)
.|++.||... ....+++|||. +++|..+++ |+.+|.+++++++ +|+|||+||.+. .++|+| |.++
T Consensus 259 ~l~~~~g~~~~~~~~v~~yd~~---~~~W~~l~~-mp~~r~~~~~a~l-~~~IYviGG~~~~~~~~~~v~~Yd~~~n--- 330 (557)
T PHA02713 259 CLVCHDTKYNVCNPCILVYNIN---TMEYSVIST-IPNHIINYASAIV-DNEIIIAGGYNFNNPSLNKVYKINIENK--- 330 (557)
T ss_pred EEEEecCccccCCCCEEEEeCC---CCeEEECCC-CCccccceEEEEE-CCEEEEEcCCCCCCCccceEEEEECCCC---
Confidence 4555555321 12468999999 899999998 9999999988888 899999999741 368999 8875
Q ss_pred Ceeee-ccccccCCCCCCCCccceEEEecCCcEEEEEcC-------eeEEEeccCCeEEEeecccCCCCCCccCCCCcee
Q 048017 215 SSLYL-RFLIETRDPGEENNLYPFLHLLPDGNLFIFANR-------RSILFDYINNKLVKEFPVIPGNDKRNYPSTGSSI 286 (566)
Q Consensus 215 ~w~~~-p~l~~~~d~~~~~~~yp~~~~l~~G~Ifv~Gg~-------~~e~yDp~t~~W~~~~p~lp~~~~r~~~~~g~av 286 (566)
.|... ||...+ .-++.+..+|+||++||. ++|+|||.+++|. .+++||. +|... ++++
T Consensus 331 ~W~~~~~m~~~R---------~~~~~~~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~-~~~~mp~--~r~~~--~~~~ 396 (557)
T PHA02713 331 IHVELPPMIKNR---------CRFSLAVIDDTIYAIGGQNGTNVERTIECYTMGDDKWK-MLPDMPI--ALSSY--GMCV 396 (557)
T ss_pred eEeeCCCCcchh---------hceeEEEECCEEEEECCcCCCCCCceEEEEECCCCeEE-ECCCCCc--ccccc--cEEE
Confidence 68754 444332 124556779999999994 4899999999998 6887765 46542 3444
Q ss_pred eecccccCCCCCCCCCCCCCCEEEEEcCCCCCc-ccccc--cc---ccccccCCeeEEEEeeCCCCCeEEe-ccCCCccc
Q 048017 287 LLPVKLSAGSDGNGTAALPDAEVMVCGGAPAGA-FIKSD--KE---SVYVEASRTCGRLKVTDKYPVWSME-FMPMPRVM 359 (566)
Q Consensus 287 llpl~~~~~~~~~~y~~~~~gkI~v~GG~~~~~-~~~~~--~~---~~~~pa~~s~~~~d~~~~~~~W~~~-~M~~~R~~ 359 (566)
+ +++||++||.+... +.... ++ ......++++++|||. +++|+.. +|+.+|..
T Consensus 397 ~------------------~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~--td~W~~v~~m~~~r~~ 456 (557)
T PHA02713 397 L------------------DQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTV--NNIWETLPNFWTGTIR 456 (557)
T ss_pred E------------------CCEEEEEeCCCcccccccccccccccccccccccceEEEECCC--CCeEeecCCCCccccc
Confidence 4 89999999975210 00000 00 0000125789999997 5899998 99999999
Q ss_pred ceeEEccCCeEEEEcCCCCCCCC---CccccCc-C-CcEEeccCCCCCCcceeEEEEcCCCcEEEecCCCCcccccCCCC
Q 048017 360 SDMLLLPSGDVIIINGASNGTAG---WEDAEEP-D-RRFVVLNPSKIPRMYHSSAVVLPDGRILVGGSNPHRRYNFTAYP 434 (566)
Q Consensus 360 ~~~vvLpdG~V~vvGG~~~g~~~---~~~~ydP-t-~~Wt~~~~~~~~R~yhs~a~LlpdG~V~v~GG~~~~~~~~~~~~ 434 (566)
++++++ +|+|||+||.+ +... ..++||| + ++|+.+++|+.+|..|+++++ ||+|||+||....
T Consensus 457 ~~~~~~-~~~IYv~GG~~-~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~~--~~~iyv~Gg~~~~-------- 524 (557)
T PHA02713 457 PGVVSH-KDDIYVVCDIK-DEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTILH--DNTIMMLHCYESY-------- 524 (557)
T ss_pred CcEEEE-CCEEEEEeCCC-CCCccceeEEEecCCCCCCeeEccccCcccccceeEEE--CCEEEEEeeecce--------
Confidence 998776 99999999976 2221 2368999 8 799999999999999999998 9999999996431
Q ss_pred CCCcceEEEEecccc
Q 048017 435 YPTDLSLEAFHPHYL 449 (566)
Q Consensus 435 ~~~~~~vE~y~Ppyl 449 (566)
..+|+|+|..=
T Consensus 525 ----~~~e~yd~~~~ 535 (557)
T PHA02713 525 ----MLQDTFNVYTY 535 (557)
T ss_pred ----eehhhcCcccc
Confidence 15899988763
No 8
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=99.97 E-value=9.1e-29 Score=259.91 Aligned_cols=242 Identities=13% Similarity=0.098 Sum_probs=172.8
Q ss_pred CCeecCCCcEEEEcCCCCCCCeEEEEcCCCCCCCcccccCcccc-cccCcceEEEecCCcEEEEcCccC----------C
Q 048017 134 SGAVLSDGTLVQTGGYNVGDRVIRLFTPCNDEGCDWVELSKNLW-DRRWYASNQILPDNRIIVVGGRRV----------F 202 (566)
Q Consensus 134 ~~~~l~dG~l~vvGG~~~g~~~v~~ydP~~~~t~~W~~~~~~M~-~~R~y~s~~~L~dG~VyvvGG~~~----------~ 202 (566)
+.+++.+++|||+||.. .+.+.+||+.+. +++|+++++ |+ .+|..++++++ |++|||+||... .
T Consensus 11 ~~~~~~~~~vyv~GG~~--~~~~~~~d~~~~-~~~W~~l~~-~p~~~R~~~~~~~~-~~~iYv~GG~~~~~~~~~~~~~~ 85 (346)
T TIGR03547 11 GTGAIIGDKVYVGLGSA--GTSWYKLDLKKP-SKGWQKIAD-FPGGPRNQAVAAAI-DGKLYVFGGIGKANSEGSPQVFD 85 (346)
T ss_pred ceEEEECCEEEEEcccc--CCeeEEEECCCC-CCCceECCC-CCCCCcccceEEEE-CCEEEEEeCCCCCCCCCcceecc
Confidence 34556699999999974 367889996311 688999998 98 58999988888 899999999742 3
Q ss_pred eEEEE-eCCCCCCCeeeeccccccCCCCCCCCccceEEE-ecCCcEEEEEcC----------------------------
Q 048017 203 TYEFY-PKIDSLSSSLYLRFLIETRDPGEENNLYPFLHL-LPDGNLFIFANR---------------------------- 252 (566)
Q Consensus 203 s~E~y-P~~~~~~~w~~~p~l~~~~d~~~~~~~yp~~~~-l~~G~Ifv~Gg~---------------------------- 252 (566)
++|+| |.++ .|...+....+ ..+.++.+ +.+|+||++||.
T Consensus 86 ~v~~Yd~~~~---~W~~~~~~~p~-------~~~~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (346)
T TIGR03547 86 DVYRYDPKKN---SWQKLDTRSPV-------GLLGASGFSLHNGQAYFTGGVNKNIFDGYFADLSAADKDSEPKDKLIAA 155 (346)
T ss_pred cEEEEECCCC---EEecCCCCCCC-------cccceeEEEEeCCEEEEEcCcChHHHHHHHhhHhhcCccchhhhhhHHH
Confidence 57899 8875 78765422121 12223333 679999999983
Q ss_pred -------------eeEEEeccCCeEEEeecccCCCCCCccCCCCceeeecccccCCCCCCCCCCCCCCEEEEEcCCCCCc
Q 048017 253 -------------RSILFDYINNKLVKEFPVIPGNDKRNYPSTGSSILLPVKLSAGSDGNGTAALPDAEVMVCGGAPAGA 319 (566)
Q Consensus 253 -------------~~e~yDp~t~~W~~~~p~lp~~~~r~~~~~g~avllpl~~~~~~~~~~y~~~~~gkI~v~GG~~~~~ 319 (566)
++|+|||++++|+ .+++||.. +|.. ++++++ +++||++||.....
T Consensus 156 ~~~~~~~~~~~~~~v~~YDp~t~~W~-~~~~~p~~-~r~~--~~~~~~------------------~~~iyv~GG~~~~~ 213 (346)
T TIGR03547 156 YFSQPPEDYFWNKNVLSYDPSTNQWR-NLGENPFL-GTAG--SAIVHK------------------GNKLLLINGEIKPG 213 (346)
T ss_pred HhCCChhHcCccceEEEEECCCCcee-ECccCCCC-cCCC--ceEEEE------------------CCEEEEEeeeeCCC
Confidence 4789999999999 58877642 2432 233333 89999999974211
Q ss_pred cccccccccccccCCeeEEEEeeCCCCCeEEe-ccCCCcc-------cceeEEccCCeEEEEcCCCCCCC----------
Q 048017 320 FIKSDKESVYVEASRTCGRLKVTDKYPVWSME-FMPMPRV-------MSDMLLLPSGDVIIINGASNGTA---------- 381 (566)
Q Consensus 320 ~~~~~~~~~~~pa~~s~~~~d~~~~~~~W~~~-~M~~~R~-------~~~~vvLpdG~V~vvGG~~~g~~---------- 381 (566)
..+..++.||+....++|+.. +|+.+|. .+.+++ .+|+|||+||.+....
T Consensus 214 -----------~~~~~~~~y~~~~~~~~W~~~~~m~~~r~~~~~~~~~~~a~~-~~~~Iyv~GG~~~~~~~~~~~~~~~~ 281 (346)
T TIGR03547 214 -----------LRTAEVKQYLFTGGKLEWNKLPPLPPPKSSSQEGLAGAFAGI-SNGVLLVAGGANFPGAQENYKNGKLY 281 (346)
T ss_pred -----------ccchheEEEEecCCCceeeecCCCCCCCCCccccccEEeeeE-ECCEEEEeecCCCCCchhhhhcCCcc
Confidence 112345667764445799987 9988763 333445 4999999999752100
Q ss_pred --------CCccccCc-CCcEEeccCCCCCCcceeEEEEcCCCcEEEecCCCCc
Q 048017 382 --------GWEDAEEP-DRRFVVLNPSKIPRMYHSSAVVLPDGRILVGGSNPHR 426 (566)
Q Consensus 382 --------~~~~~ydP-t~~Wt~~~~~~~~R~yhs~a~LlpdG~V~v~GG~~~~ 426 (566)
...++||| +++|+.+++|+.+|.+|+++++ +|+|||+||....
T Consensus 282 ~~~~~~~~~~~e~yd~~~~~W~~~~~lp~~~~~~~~~~~--~~~iyv~GG~~~~ 333 (346)
T TIGR03547 282 AHEGLIKAWSSEVYALDNGKWSKVGKLPQGLAYGVSVSW--NNGVLLIGGENSG 333 (346)
T ss_pred ccCCCCceeEeeEEEecCCcccccCCCCCCceeeEEEEc--CCEEEEEeccCCC
Confidence 01368999 9999999999999998876666 9999999997543
No 9
>PLN02153 epithiospecifier protein
Probab=99.96 E-value=4.6e-27 Score=246.63 Aligned_cols=286 Identities=17% Similarity=0.186 Sum_probs=195.9
Q ss_pred CCCceEEccC----CCccceeEEEEeeCCeEEEEeccCCCCCCCCCCCCccccCCCCCCCcccceEEEEECCCCcEEeCc
Q 048017 50 SGGQWVLLQS----SIGISAMHMQVLNNDKVIIFDRTDMGPSNLSLPIDKCRKEGDVGQLDCTAHSVLYDIASNTFRPLL 125 (566)
Q Consensus 50 ~~g~W~~l~~----~~~~~a~h~~~l~~gkV~~~gg~~~~~s~~~~p~G~~~~~~~~~~~~~~~~~~~yDp~t~~w~~l~ 125 (566)
..++|+.+.. .+..+..|++++.+++||++||....... ....+++||+.+++|+.++
T Consensus 5 ~~~~W~~~~~~~~~~P~pR~~h~~~~~~~~iyv~GG~~~~~~~------------------~~~~~~~yd~~~~~W~~~~ 66 (341)
T PLN02153 5 LQGGWIKVEQKGGKGPGPRCSHGIAVVGDKLYSFGGELKPNEH------------------IDKDLYVFDFNTHTWSIAP 66 (341)
T ss_pred cCCeEEEecCCCCCCCCCCCcceEEEECCEEEEECCccCCCCc------------------eeCcEEEEECCCCEEEEcC
Confidence 4578999975 34456678888889999999997421100 1135889999999999987
Q ss_pred CCC-cc--cc-cCCeecCCCcEEEEcCCCCC--CCeEEEEcCCCCCCCcccccCccc-----ccccCcceEEEecCCcEE
Q 048017 126 LQT-DT--WC-SSGAVLSDGTLVQTGGYNVG--DRVIRLFTPCNDEGCDWVELSKNL-----WDRRWYASNQILPDNRII 194 (566)
Q Consensus 126 ~~~-~~--~c-~~~~~l~dG~l~vvGG~~~g--~~~v~~ydP~~~~t~~W~~~~~~M-----~~~R~y~s~~~L~dG~Vy 194 (566)
.+. .+ .| ...++..+++||++||.... .+.+++|||. +++|+++++ | +.+|..|+++++ +++||
T Consensus 67 ~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~---t~~W~~~~~-~~~~~~p~~R~~~~~~~~-~~~iy 141 (341)
T PLN02153 67 ANGDVPRISCLGVRMVAVGTKLYIFGGRDEKREFSDFYSYDTV---KNEWTFLTK-LDEEGGPEARTFHSMASD-ENHVY 141 (341)
T ss_pred ccCCCCCCccCceEEEEECCEEEEECCCCCCCccCcEEEEECC---CCEEEEecc-CCCCCCCCCceeeEEEEE-CCEEE
Confidence 643 12 23 33456679999999997532 4689999999 899999876 7 678999988877 89999
Q ss_pred EEcCccCCeEEEEeCCCCCCCeeeeccccccCCCCCCCCccceEEEecCCcEEEEEcCeeEEEeccCCeEEEeecccCCC
Q 048017 195 VVGGRRVFTYEFYPKIDSLSSSLYLRFLIETRDPGEENNLYPFLHLLPDGNLFIFANRRSILFDYINNKLVKEFPVIPGN 274 (566)
Q Consensus 195 vvGG~~~~s~E~yP~~~~~~~w~~~p~l~~~~d~~~~~~~yp~~~~l~~G~Ifv~Gg~~~e~yDp~t~~W~~~~p~lp~~ 274 (566)
|+||...... +... ..+ +++++||+++++|. .++++...
T Consensus 142 v~GG~~~~~~-----------------~~~~-------~~~----------------~~v~~yd~~~~~W~-~l~~~~~~ 180 (341)
T PLN02153 142 VFGGVSKGGL-----------------MKTP-------ERF----------------RTIEAYNIADGKWV-QLPDPGEN 180 (341)
T ss_pred EECCccCCCc-----------------cCCC-------ccc----------------ceEEEEECCCCeEe-eCCCCCCC
Confidence 9999752110 0000 000 14578999999998 57754211
Q ss_pred -CCCccCCCCceeeecccccCCCCCCCCCCCCCCEEEEEcCCCCCccccccccccccccCCeeEEEEeeCCCCCeEEe--
Q 048017 275 -DKRNYPSTGSSILLPVKLSAGSDGNGTAALPDAEVMVCGGAPAGAFIKSDKESVYVEASRTCGRLKVTDKYPVWSME-- 351 (566)
Q Consensus 275 -~~r~~~~~g~avllpl~~~~~~~~~~y~~~~~gkI~v~GG~~~~~~~~~~~~~~~~pa~~s~~~~d~~~~~~~W~~~-- 351 (566)
.+|... +++++ +++||++||.... +.... .....++.+++||+. +++|+..
T Consensus 181 ~~~r~~~--~~~~~------------------~~~iyv~GG~~~~-~~~gG---~~~~~~~~v~~yd~~--~~~W~~~~~ 234 (341)
T PLN02153 181 FEKRGGA--GFAVV------------------QGKIWVVYGFATS-ILPGG---KSDYESNAVQFFDPA--SGKWTEVET 234 (341)
T ss_pred CCCCCcc--eEEEE------------------CCeEEEEeccccc-cccCC---ccceecCceEEEEcC--CCcEEeccc
Confidence 234431 22332 8999999996421 00000 000124679999997 5899975
Q ss_pred --ccCCCcccceeEEccCCeEEEEcCCCC-------CCCC---CccccCc-CCcEEecc-----CCCCCCcceeEEEEcC
Q 048017 352 --FMPMPRVMSDMLLLPSGDVIIINGASN-------GTAG---WEDAEEP-DRRFVVLN-----PSKIPRMYHSSAVVLP 413 (566)
Q Consensus 352 --~M~~~R~~~~~vvLpdG~V~vvGG~~~-------g~~~---~~~~ydP-t~~Wt~~~-----~~~~~R~yhs~a~Llp 413 (566)
.||.+|..++++++ +++|||+||... +... ...+||| +++|+.+. +++..|.+|+++.+.-
T Consensus 235 ~g~~P~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~~W~~~~~~~~~~~pr~~~~~~~~~v~~ 313 (341)
T PLN02153 235 TGAKPSARSVFAHAVV-GKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETLVWEKLGECGEPAMPRGWTAYTTATVYG 313 (341)
T ss_pred cCCCCCCcceeeeEEE-CCEEEEECcccCCccccccccccccccEEEEEcCccEEEeccCCCCCCCCCccccccccccCC
Confidence 37889998887766 999999999631 1111 1247999 99999885 5666677677777656
Q ss_pred CCcEEEecCCCCc
Q 048017 414 DGRILVGGSNPHR 426 (566)
Q Consensus 414 dG~V~v~GG~~~~ 426 (566)
+++||+.||....
T Consensus 314 ~~~~~~~gG~~~~ 326 (341)
T PLN02153 314 KNGLLMHGGKLPT 326 (341)
T ss_pred cceEEEEcCcCCC
Confidence 6799999997543
No 10
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=99.96 E-value=5e-27 Score=249.58 Aligned_cols=270 Identities=14% Similarity=0.080 Sum_probs=181.9
Q ss_pred EEeCcCCCcccccCCeecCCCcEEEEcCCCCCCCeEEEEcCCCCCCCcccccCcccc-cccCcceEEEecCCcEEEEcCc
Q 048017 121 FRPLLLQTDTWCSSGAVLSDGTLVQTGGYNVGDRVIRLFTPCNDEGCDWVELSKNLW-DRRWYASNQILPDNRIIVVGGR 199 (566)
Q Consensus 121 w~~l~~~~~~~c~~~~~l~dG~l~vvGG~~~g~~~v~~ydP~~~~t~~W~~~~~~M~-~~R~y~s~~~L~dG~VyvvGG~ 199 (566)
++.++.++.++-...++..+++||++||.. .+.+.+||+... +++|.++++ |+ .+|..++++++ +++|||+||.
T Consensus 19 ~~~l~~lP~~~~~~~~~~~~~~iyv~gG~~--~~~~~~~d~~~~-~~~W~~l~~-~p~~~r~~~~~v~~-~~~IYV~GG~ 93 (376)
T PRK14131 19 AEQLPDLPVPFKNGTGAIDNNTVYVGLGSA--GTSWYKLDLNAP-SKGWTKIAA-FPGGPREQAVAAFI-DGKLYVFGGI 93 (376)
T ss_pred cccCCCCCcCccCCeEEEECCEEEEEeCCC--CCeEEEEECCCC-CCCeEECCc-CCCCCcccceEEEE-CCEEEEEcCC
Confidence 445555554433234555699999999974 356788987521 478999987 87 58988888888 8999999997
Q ss_pred cC----------CeEEEE-eCCCCCCCeeeeccccccCCCCCCCCccceEEEecCCcEEEEEcC----------------
Q 048017 200 RV----------FTYEFY-PKIDSLSSSLYLRFLIETRDPGEENNLYPFLHLLPDGNLFIFANR---------------- 252 (566)
Q Consensus 200 ~~----------~s~E~y-P~~~~~~~w~~~p~l~~~~d~~~~~~~yp~~~~l~~G~Ifv~Gg~---------------- 252 (566)
.. ..+++| |.++ .|...+.+..+. ...+.++++.+++||++||.
T Consensus 94 ~~~~~~~~~~~~~~v~~YD~~~n---~W~~~~~~~p~~------~~~~~~~~~~~~~IYv~GG~~~~~~~~~~~d~~~~~ 164 (376)
T PRK14131 94 GKTNSEGSPQVFDDVYKYDPKTN---SWQKLDTRSPVG------LAGHVAVSLHNGKAYITGGVNKNIFDGYFEDLAAAG 164 (376)
T ss_pred CCCCCCCceeEcccEEEEeCCCC---EEEeCCCCCCCc------ccceEEEEeeCCEEEEECCCCHHHHHHHHhhhhhcc
Confidence 53 257888 7765 787654321111 12233334379999999993
Q ss_pred -------------------------eeEEEeccCCeEEEeecccCCCCCCccCCCCceeeecccccCCCCCCCCCCCCCC
Q 048017 253 -------------------------RSILFDYINNKLVKEFPVIPGNDKRNYPSTGSSILLPVKLSAGSDGNGTAALPDA 307 (566)
Q Consensus 253 -------------------------~~e~yDp~t~~W~~~~p~lp~~~~r~~~~~g~avllpl~~~~~~~~~~y~~~~~g 307 (566)
.+++||+.+++|. .++++|.. +|.. +++++. ++
T Consensus 165 ~~~~~~~~i~~~~~~~~~~~~~~~~~v~~YD~~t~~W~-~~~~~p~~-~~~~--~a~v~~------------------~~ 222 (376)
T PRK14131 165 KDKTPKDKINDAYFDKKPEDYFFNKEVLSYDPSTNQWK-NAGESPFL-GTAG--SAVVIK------------------GN 222 (376)
T ss_pred cchhhhhhhHHHHhcCChhhcCcCceEEEEECCCCeee-ECCcCCCC-CCCc--ceEEEE------------------CC
Confidence 3789999999998 57767642 2332 122222 78
Q ss_pred EEEEEcCCCCCccccccccccccccCCeeEEEEeeCCCCCeEEe-ccCCCcccc-------eeEEccCCeEEEEcCCCCC
Q 048017 308 EVMVCGGAPAGAFIKSDKESVYVEASRTCGRLKVTDKYPVWSME-FMPMPRVMS-------DMLLLPSGDVIIINGASNG 379 (566)
Q Consensus 308 kI~v~GG~~~~~~~~~~~~~~~~pa~~s~~~~d~~~~~~~W~~~-~M~~~R~~~-------~~vvLpdG~V~vvGG~~~g 379 (566)
+||++||...... .+..+..+++....++|+.. +|+.+|..+ .++++.+|+|||+||....
T Consensus 223 ~iYv~GG~~~~~~-----------~~~~~~~~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~~a~~~~~~iyv~GG~~~~ 291 (376)
T PRK14131 223 KLWLINGEIKPGL-----------RTDAVKQGKFTGNNLKWQKLPDLPPAPGGSSQEGVAGAFAGYSNGVLLVAGGANFP 291 (376)
T ss_pred EEEEEeeeECCCc-----------CChhheEEEecCCCcceeecCCCCCCCcCCcCCccceEeceeECCEEEEeeccCCC
Confidence 9999999642110 12233333332235899987 999887421 2134459999999997521
Q ss_pred CC-------------C-----CccccCc-CCcEEeccCCCCCCcceeEEEEcCCCcEEEecCCCCcccccCCCCCCCcce
Q 048017 380 TA-------------G-----WEDAEEP-DRRFVVLNPSKIPRMYHSSAVVLPDGRILVGGSNPHRRYNFTAYPYPTDLS 440 (566)
Q Consensus 380 ~~-------------~-----~~~~ydP-t~~Wt~~~~~~~~R~yhs~a~LlpdG~V~v~GG~~~~~~~~~~~~~~~~~~ 440 (566)
.. + ..++||| +++|+.+++|+.+|.+|+++++ +|+|||.||....+. ...+
T Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~lp~~r~~~~av~~--~~~iyv~GG~~~~~~--------~~~~ 361 (376)
T PRK14131 292 GARENYQNGKLYAHEGLKKSWSDEIYALVNGKWQKVGELPQGLAYGVSVSW--NNGVLLIGGETAGGK--------AVSD 361 (376)
T ss_pred CChhhhhcCCcccccCCcceeehheEEecCCcccccCcCCCCccceEEEEe--CCEEEEEcCCCCCCc--------Eeee
Confidence 10 0 1357999 9999999999999999976666 999999999644321 2447
Q ss_pred EEEEecc
Q 048017 441 LEAFHPH 447 (566)
Q Consensus 441 vE~y~Pp 447 (566)
+++|.|.
T Consensus 362 v~~~~~~ 368 (376)
T PRK14131 362 VTLLSWD 368 (376)
T ss_pred EEEEEEc
Confidence 8888876
No 11
>PHA02790 Kelch-like protein; Provisional
Probab=99.96 E-value=2.2e-27 Score=259.68 Aligned_cols=217 Identities=15% Similarity=0.205 Sum_probs=171.5
Q ss_pred EECCCCcEEeCcCCCcccccCCeecCCCcEEEEcCCCC--CCCeEEEEcCCCCCCCcccccCcccccccCcceEEEecCC
Q 048017 114 YDIASNTFRPLLLQTDTWCSSGAVLSDGTLVQTGGYNV--GDRVIRLFTPCNDEGCDWVELSKNLWDRRWYASNQILPDN 191 (566)
Q Consensus 114 yDp~t~~w~~l~~~~~~~c~~~~~l~dG~l~vvGG~~~--g~~~v~~ydP~~~~t~~W~~~~~~M~~~R~y~s~~~L~dG 191 (566)
|++.+++|.... ..+.++..++.||++||... ..+++++|||. +++|.++++ |+.+|.+++++++ ||
T Consensus 251 ~~~~~~~~~~~~------~~~~~~~~~~~lyviGG~~~~~~~~~v~~Ydp~---~~~W~~~~~-m~~~r~~~~~v~~-~~ 319 (480)
T PHA02790 251 YPMNMDQIIDIF------HMCTSTHVGEVVYLIGGWMNNEIHNNAIAVNYI---SNNWIPIPP-MNSPRLYASGVPA-NN 319 (480)
T ss_pred cCCcccceeecc------CCcceEEECCEEEEEcCCCCCCcCCeEEEEECC---CCEEEECCC-CCchhhcceEEEE-CC
Confidence 456667776632 11223446889999999753 34789999999 899999998 9999999999888 89
Q ss_pred cEEEEcCccCCeEEEEeCCCCCCCeeeeccccccCCCCCCCCccceEEEecCCcEEEEEcCeeEEEeccCCeEEEeeccc
Q 048017 192 RIIVVGGRRVFTYEFYPKIDSLSSSLYLRFLIETRDPGEENNLYPFLHLLPDGNLFIFANRRSILFDYINNKLVKEFPVI 271 (566)
Q Consensus 192 ~VyvvGG~~~~s~E~yP~~~~~~~w~~~p~l~~~~d~~~~~~~yp~~~~l~~G~Ifv~Gg~~~e~yDp~t~~W~~~~p~l 271 (566)
+||++||.+.. .++|+|||.+|+|. .+|+|
T Consensus 320 ~iYviGG~~~~-------------------------------------------------~sve~ydp~~n~W~-~~~~l 349 (480)
T PHA02790 320 KLYVVGGLPNP-------------------------------------------------TSVERWFHGDAAWV-NMPSL 349 (480)
T ss_pred EEEEECCcCCC-------------------------------------------------CceEEEECCCCeEE-ECCCC
Confidence 99999995310 03578999999998 68877
Q ss_pred CCCCCCccCCCCceeeecccccCCCCCCCCCCCCCCEEEEEcCCCCCccccccccccccccCCeeEEEEeeCCCCCeEEe
Q 048017 272 PGNDKRNYPSTGSSILLPVKLSAGSDGNGTAALPDAEVMVCGGAPAGAFIKSDKESVYVEASRTCGRLKVTDKYPVWSME 351 (566)
Q Consensus 272 p~~~~r~~~~~g~avllpl~~~~~~~~~~y~~~~~gkI~v~GG~~~~~~~~~~~~~~~~pa~~s~~~~d~~~~~~~W~~~ 351 (566)
|. +|..+ +++++ +++||++||.+.. .+++++|||. +++|+..
T Consensus 350 ~~--~r~~~--~~~~~------------------~g~IYviGG~~~~--------------~~~ve~ydp~--~~~W~~~ 391 (480)
T PHA02790 350 LK--PRCNP--AVASI------------------NNVIYVIGGHSET--------------DTTTEYLLPN--HDQWQFG 391 (480)
T ss_pred CC--CCccc--EEEEE------------------CCEEEEecCcCCC--------------CccEEEEeCC--CCEEEeC
Confidence 64 46542 33443 8999999997521 2578999997 5899998
Q ss_pred -ccCCCcccceeEEccCCeEEEEcCCCCCCCCCccccCc-CCcEEeccCCCCCCcceeEEEEcCCCcEEEecCCCCcccc
Q 048017 352 -FMPMPRVMSDMLLLPSGDVIIINGASNGTAGWEDAEEP-DRRFVVLNPSKIPRMYHSSAVVLPDGRILVGGSNPHRRYN 429 (566)
Q Consensus 352 -~M~~~R~~~~~vvLpdG~V~vvGG~~~g~~~~~~~ydP-t~~Wt~~~~~~~~R~yhs~a~LlpdG~V~v~GG~~~~~~~ 429 (566)
+|+.+|..++++++ +|+|||+||. .++||| +++|+.+++|+.+|..|+++++ +|+|||+||.....
T Consensus 392 ~~m~~~r~~~~~~~~-~~~IYv~GG~-------~e~ydp~~~~W~~~~~m~~~r~~~~~~v~--~~~IYviGG~~~~~-- 459 (480)
T PHA02790 392 PSTYYPHYKSCALVF-GRRLFLVGRN-------AEFYCESSNTWTLIDDPIYPRDNPELIIV--DNKLLLIGGFYRGS-- 459 (480)
T ss_pred CCCCCccccceEEEE-CCEEEEECCc-------eEEecCCCCcEeEcCCCCCCccccEEEEE--CCEEEEECCcCCCc--
Confidence 99999999987776 9999999984 368999 9999999999999999998888 99999999964321
Q ss_pred cCCCCCCCcceEEEEeccc
Q 048017 430 FTAYPYPTDLSLEAFHPHY 448 (566)
Q Consensus 430 ~~~~~~~~~~~vE~y~Ppy 448 (566)
....+|+|+|..
T Consensus 460 -------~~~~ve~Yd~~~ 471 (480)
T PHA02790 460 -------YIDTIEVYNNRT 471 (480)
T ss_pred -------ccceEEEEECCC
Confidence 124799999974
No 12
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=99.95 E-value=2.6e-26 Score=241.28 Aligned_cols=251 Identities=15% Similarity=0.119 Sum_probs=172.6
Q ss_pred EEEEeeCCeEEEEeccCCCCCCCCCCCCccccCCCCCCCcccceEEEEEC--CCCcEEeCcCCC-cccccCCeecCCCcE
Q 048017 67 HMQVLNNDKVIIFDRTDMGPSNLSLPIDKCRKEGDVGQLDCTAHSVLYDI--ASNTFRPLLLQT-DTWCSSGAVLSDGTL 143 (566)
Q Consensus 67 h~~~l~~gkV~~~gg~~~~~s~~~~p~G~~~~~~~~~~~~~~~~~~~yDp--~t~~w~~l~~~~-~~~c~~~~~l~dG~l 143 (566)
+++++.+++||++||... ..+.+||+ .+++|+.++.++ ..++..+++..+++|
T Consensus 11 ~~~~~~~~~vyv~GG~~~------------------------~~~~~~d~~~~~~~W~~l~~~p~~~R~~~~~~~~~~~i 66 (346)
T TIGR03547 11 GTGAIIGDKVYVGLGSAG------------------------TSWYKLDLKKPSKGWQKIADFPGGPRNQAVAAAIDGKL 66 (346)
T ss_pred ceEEEECCEEEEEccccC------------------------CeeEEEECCCCCCCceECCCCCCCCcccceEEEECCEE
Confidence 566667999999999631 13567885 678999999886 467777777889999
Q ss_pred EEEcCCCC--------CCCeEEEEcCCCCCCCcccccCcccccccCcceEEEecCCcEEEEcCccC--------------
Q 048017 144 VQTGGYNV--------GDRVIRLFTPCNDEGCDWVELSKNLWDRRWYASNQILPDNRIIVVGGRRV-------------- 201 (566)
Q Consensus 144 ~vvGG~~~--------g~~~v~~ydP~~~~t~~W~~~~~~M~~~R~y~s~~~L~dG~VyvvGG~~~-------------- 201 (566)
|++||... ..+.+++|||. +++|++++..|+..|..++++++.+|+|||+||.+.
T Consensus 67 Yv~GG~~~~~~~~~~~~~~~v~~Yd~~---~~~W~~~~~~~p~~~~~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~ 143 (346)
T TIGR03547 67 YVFGGIGKANSEGSPQVFDDVYRYDPK---KNSWQKLDTRSPVGLLGASGFSLHNGQAYFTGGVNKNIFDGYFADLSAAD 143 (346)
T ss_pred EEEeCCCCCCCCCcceecccEEEEECC---CCEEecCCCCCCCcccceeEEEEeCCEEEEEcCcChHHHHHHHhhHhhcC
Confidence 99999742 14679999999 999999874366777667666334999999999742
Q ss_pred ------------------------CeEEEE-eCCCCCCCeeeec-cccccCCCCCCCCccceEEEecCCcEEEEEcCe--
Q 048017 202 ------------------------FTYEFY-PKIDSLSSSLYLR-FLIETRDPGEENNLYPFLHLLPDGNLFIFANRR-- 253 (566)
Q Consensus 202 ------------------------~s~E~y-P~~~~~~~w~~~p-~l~~~~d~~~~~~~yp~~~~l~~G~Ifv~Gg~~-- 253 (566)
.++|+| |.++ +|...+ +.... .+.++++..+++||++||..
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~YDp~t~---~W~~~~~~p~~~--------r~~~~~~~~~~~iyv~GG~~~~ 212 (346)
T TIGR03547 144 KDSEPKDKLIAAYFSQPPEDYFWNKNVLSYDPSTN---QWRNLGENPFLG--------TAGSAIVHKGNKLLLINGEIKP 212 (346)
T ss_pred ccchhhhhhHHHHhCCChhHcCccceEEEEECCCC---ceeECccCCCCc--------CCCceEEEECCEEEEEeeeeCC
Confidence 468999 8875 787543 32211 12345566799999999942
Q ss_pred ------eEEEe--ccCCeEEEeecccCCCCCCcc-CC--CCc-eeeecccccCCCCCCCCCCCCCCEEEEEcCCCCCccc
Q 048017 254 ------SILFD--YINNKLVKEFPVIPGNDKRNY-PS--TGS-SILLPVKLSAGSDGNGTAALPDAEVMVCGGAPAGAFI 321 (566)
Q Consensus 254 ------~e~yD--p~t~~W~~~~p~lp~~~~r~~-~~--~g~-avllpl~~~~~~~~~~y~~~~~gkI~v~GG~~~~~~~ 321 (566)
.++|| +++++|+ .+++||. +|.. +. ++. ++.+ +++||++||.......
T Consensus 213 ~~~~~~~~~y~~~~~~~~W~-~~~~m~~--~r~~~~~~~~~~~a~~~-----------------~~~Iyv~GG~~~~~~~ 272 (346)
T TIGR03547 213 GLRTAEVKQYLFTGGKLEWN-KLPPLPP--PKSSSQEGLAGAFAGIS-----------------NGVLLVAGGANFPGAQ 272 (346)
T ss_pred CccchheEEEEecCCCceee-ecCCCCC--CCCCccccccEEeeeEE-----------------CCEEEEeecCCCCCch
Confidence 34454 5778998 5887764 3421 11 111 2221 8999999997521000
Q ss_pred cc-cccccc----cccCCeeEEEEeeCCCCCeEEe-ccCCCcccceeEEccCCeEEEEcCCCC
Q 048017 322 KS-DKESVY----VEASRTCGRLKVTDKYPVWSME-FMPMPRVMSDMLLLPSGDVIIINGASN 378 (566)
Q Consensus 322 ~~-~~~~~~----~pa~~s~~~~d~~~~~~~W~~~-~M~~~R~~~~~vvLpdG~V~vvGG~~~ 378 (566)
.. ..+..+ ...+.++|+||+. .++|+.. +||.+|..+.++++ +|+|||+||.+.
T Consensus 273 ~~~~~~~~~~~~~~~~~~~~e~yd~~--~~~W~~~~~lp~~~~~~~~~~~-~~~iyv~GG~~~ 332 (346)
T TIGR03547 273 ENYKNGKLYAHEGLIKAWSSEVYALD--NGKWSKVGKLPQGLAYGVSVSW-NNGVLLIGGENS 332 (346)
T ss_pred hhhhcCCccccCCCCceeEeeEEEec--CCcccccCCCCCCceeeEEEEc-CCEEEEEeccCC
Confidence 00 000000 0113468999997 5899988 99999988776555 999999999863
No 13
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=99.94 E-value=1.2e-25 Score=234.04 Aligned_cols=261 Identities=15% Similarity=0.076 Sum_probs=181.7
Q ss_pred eEEEEeeCCeEEEEeccCCCCCCCCCC-CCccccCCCCCCCcccceEEEEE-CCCC-cEEeCcCCCcccccCCeecCCCc
Q 048017 66 MHMQVLNNDKVIIFDRTDMGPSNLSLP-IDKCRKEGDVGQLDCTAHSVLYD-IASN-TFRPLLLQTDTWCSSGAVLSDGT 142 (566)
Q Consensus 66 ~h~~~l~~gkV~~~gg~~~~~s~~~~p-~G~~~~~~~~~~~~~~~~~~~yD-p~t~-~w~~l~~~~~~~c~~~~~l~dG~ 142 (566)
.|.+.+.+++||++||.+. + ...+. .|. ..++..+.+|+ +..+ +|+.++.++.+++.++++..+++
T Consensus 6 g~~~~~~~~~l~v~GG~~~-~-~~~~~~~g~---------~~~~~~v~~~~~~~~~~~W~~~~~lp~~r~~~~~~~~~~~ 74 (323)
T TIGR03548 6 GCYAGIIGDYILVAGGCNF-P-EDPLAEGGK---------KKNYKGIYIAKDENSNLKWVKDGQLPYEAAYGASVSVENG 74 (323)
T ss_pred eEeeeEECCEEEEeeccCC-C-CCchhhCCc---------EEeeeeeEEEecCCCceeEEEcccCCccccceEEEEECCE
Confidence 3555558999999999863 2 11111 111 01223344454 4433 79999988777766666667999
Q ss_pred EEEEcCCCC--CCCeEEEEcCCCCCCCcc----cccCcccccccCcceEEEecCCcEEEEcCccCCeEEEEeCCCCCCCe
Q 048017 143 LVQTGGYNV--GDRVIRLFTPCNDEGCDW----VELSKNLWDRRWYASNQILPDNRIIVVGGRRVFTYEFYPKIDSLSSS 216 (566)
Q Consensus 143 l~vvGG~~~--g~~~v~~ydP~~~~t~~W----~~~~~~M~~~R~y~s~~~L~dG~VyvvGG~~~~s~E~yP~~~~~~~w 216 (566)
||++||... ..+.+++||+. +++| +.+++ |+.+|..++++++ +++|||+||..... .
T Consensus 75 lyviGG~~~~~~~~~v~~~d~~---~~~w~~~~~~~~~-lp~~~~~~~~~~~-~~~iYv~GG~~~~~------------~ 137 (323)
T TIGR03548 75 IYYIGGSNSSERFSSVYRITLD---ESKEELICETIGN-LPFTFENGSACYK-DGTLYVGGGNRNGK------------P 137 (323)
T ss_pred EEEEcCCCCCCCceeEEEEEEc---CCceeeeeeEcCC-CCcCccCceEEEE-CCEEEEEeCcCCCc------------c
Confidence 999999753 24789999998 7776 77787 9999998988888 89999999953110 0
Q ss_pred eeeccccccCCCCCCCCccceEEEecCCcEEEEEcCeeEEEeccCCeEEEeecccCCCCCCccCCCCceeeecccccCCC
Q 048017 217 LYLRFLIETRDPGEENNLYPFLHLLPDGNLFIFANRRSILFDYINNKLVKEFPVIPGNDKRNYPSTGSSILLPVKLSAGS 296 (566)
Q Consensus 217 ~~~p~l~~~~d~~~~~~~yp~~~~l~~G~Ifv~Gg~~~e~yDp~t~~W~~~~p~lp~~~~r~~~~~g~avllpl~~~~~~ 296 (566)
+ +++++||+++++|+ .+++||.. +|..+ .++++
T Consensus 138 -----~-----------------------------~~v~~yd~~~~~W~-~~~~~p~~-~r~~~--~~~~~--------- 170 (323)
T TIGR03548 138 -----S-----------------------------NKSYLFNLETQEWF-ELPDFPGE-PRVQP--VCVKL--------- 170 (323)
T ss_pred -----C-----------------------------ceEEEEcCCCCCee-ECCCCCCC-CCCcc--eEEEE---------
Confidence 0 14678999999998 58877643 35432 22222
Q ss_pred CCCCCCCCCCCEEEEEcCCCCCccccccccccccccCCeeEEEEeeCCCCCeEEe-ccC---CCc--ccceeEEccCCeE
Q 048017 297 DGNGTAALPDAEVMVCGGAPAGAFIKSDKESVYVEASRTCGRLKVTDKYPVWSME-FMP---MPR--VMSDMLLLPSGDV 370 (566)
Q Consensus 297 ~~~~y~~~~~gkI~v~GG~~~~~~~~~~~~~~~~pa~~s~~~~d~~~~~~~W~~~-~M~---~~R--~~~~~vvLpdG~V 370 (566)
+++||++||.+... ..++++||+. +++|+.. +|+ .+| ..+.++++.+++|
T Consensus 171 ---------~~~iYv~GG~~~~~-------------~~~~~~yd~~--~~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~i 226 (323)
T TIGR03548 171 ---------QNELYVFGGGSNIA-------------YTDGYKYSPK--KNQWQKVADPTTDSEPISLLGAASIKINESLL 226 (323)
T ss_pred ---------CCEEEEEcCCCCcc-------------ccceEEEecC--CCeeEECCCCCCCCCceeccceeEEEECCCEE
Confidence 78999999975211 2457899997 4899987 764 343 3344455668999
Q ss_pred EEEcCCCCCC---------------------------------CCCccccCc-CCcEEeccCCC-CCCcceeEEEEcCCC
Q 048017 371 IIINGASNGT---------------------------------AGWEDAEEP-DRRFVVLNPSK-IPRMYHSSAVVLPDG 415 (566)
Q Consensus 371 ~vvGG~~~g~---------------------------------~~~~~~ydP-t~~Wt~~~~~~-~~R~yhs~a~LlpdG 415 (566)
||+||.+... ....++||| +++|+.+++++ .+|..|+++++ |+
T Consensus 227 yv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~r~~~~~~~~--~~ 304 (323)
T TIGR03548 227 LCIGGFNKDVYNDAVIDLATMKDESLKGYKKEYFLKPPEWYNWNRKILIYNVRTGKWKSIGNSPFFARCGAALLLT--GN 304 (323)
T ss_pred EEECCcCHHHHHHHHhhhhhccchhhhhhHHHHhCCCccccCcCceEEEEECCCCeeeEcccccccccCchheEEE--CC
Confidence 9999976210 001358999 99999999887 58998887777 99
Q ss_pred cEEEecCCCCcc
Q 048017 416 RILVGGSNPHRR 427 (566)
Q Consensus 416 ~V~v~GG~~~~~ 427 (566)
+||++||....+
T Consensus 305 ~iyv~GG~~~pg 316 (323)
T TIGR03548 305 NIFSINGELKPG 316 (323)
T ss_pred EEEEEeccccCC
Confidence 999999975543
No 14
>PHA02790 Kelch-like protein; Provisional
Probab=99.94 E-value=7.8e-26 Score=247.52 Aligned_cols=205 Identities=16% Similarity=0.195 Sum_probs=161.1
Q ss_pred EeeCCeEEEEeccCCCCCCCCCCCCccccCCCCCCCcccceEEEEECCCCcEEeCcCCCcccccCCeecCCCcEEEEcCC
Q 048017 70 VLNNDKVIIFDRTDMGPSNLSLPIDKCRKEGDVGQLDCTAHSVLYDIASNTFRPLLLQTDTWCSSGAVLSDGTLVQTGGY 149 (566)
Q Consensus 70 ~l~~gkV~~~gg~~~~~s~~~~p~G~~~~~~~~~~~~~~~~~~~yDp~t~~w~~l~~~~~~~c~~~~~l~dG~l~vvGG~ 149 (566)
+..+++||++||.+. .. ....+++|||.+++|..++.++.+++..+++..||+||++||.
T Consensus 268 ~~~~~~lyviGG~~~-~~-------------------~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~~~~~iYviGG~ 327 (480)
T PHA02790 268 THVGEVVYLIGGWMN-NE-------------------IHNNAIAVNYISNNWIPIPPMNSPRLYASGVPANNKLYVVGGL 327 (480)
T ss_pred EEECCEEEEEcCCCC-CC-------------------cCCeEEEEECCCCEEEECCCCCchhhcceEEEECCEEEEECCc
Confidence 336899999999742 10 1245889999999999999988787776777789999999997
Q ss_pred CCCCCeEEEEcCCCCCCCcccccCcccccccCcceEEEecCCcEEEEcCccC--CeEEEE-eCCCCCCCeeee-cccccc
Q 048017 150 NVGDRVIRLFTPCNDEGCDWVELSKNLWDRRWYASNQILPDNRIIVVGGRRV--FTYEFY-PKIDSLSSSLYL-RFLIET 225 (566)
Q Consensus 150 ~~g~~~v~~ydP~~~~t~~W~~~~~~M~~~R~y~s~~~L~dG~VyvvGG~~~--~s~E~y-P~~~~~~~w~~~-p~l~~~ 225 (566)
. +.++++.|||. +++|..+++ |+.+|..++++++ +|+|||+||.+. .++|+| |.++ .|... ||..++
T Consensus 328 ~-~~~sve~ydp~---~n~W~~~~~-l~~~r~~~~~~~~-~g~IYviGG~~~~~~~ve~ydp~~~---~W~~~~~m~~~r 398 (480)
T PHA02790 328 P-NPTSVERWFHG---DAAWVNMPS-LLKPRCNPAVASI-NNVIYVIGGHSETDTTTEYLLPNHD---QWQFGPSTYYPH 398 (480)
T ss_pred C-CCCceEEEECC---CCeEEECCC-CCCCCcccEEEEE-CCEEEEecCcCCCCccEEEEeCCCC---EEEeCCCCCCcc
Confidence 4 34779999999 899999998 9999999999988 899999999764 468999 9875 78754 443332
Q ss_pred CCCCCCCCccceEEEecCCcEEEEEcCeeEEEeccCCeEEEeecccCCCCCCccCCCCceeeecccccCCCCCCCCCCCC
Q 048017 226 RDPGEENNLYPFLHLLPDGNLFIFANRRSILFDYINNKLVKEFPVIPGNDKRNYPSTGSSILLPVKLSAGSDGNGTAALP 305 (566)
Q Consensus 226 ~d~~~~~~~yp~~~~l~~G~Ifv~Gg~~~e~yDp~t~~W~~~~p~lp~~~~r~~~~~g~avllpl~~~~~~~~~~y~~~~ 305 (566)
.+ ++.+..+|+||++||. +|+|||++|+|+ .+++|+. +|.. .|++++
T Consensus 399 --------~~-~~~~~~~~~IYv~GG~-~e~ydp~~~~W~-~~~~m~~--~r~~--~~~~v~------------------ 445 (480)
T PHA02790 399 --------YK-SCALVFGRRLFLVGRN-AEFYCESSNTWT-LIDDPIY--PRDN--PELIIV------------------ 445 (480)
T ss_pred --------cc-ceEEEECCEEEEECCc-eEEecCCCCcEe-EcCCCCC--Cccc--cEEEEE------------------
Confidence 22 3455679999999985 799999999999 6886654 4654 344544
Q ss_pred CCEEEEEcCCCCCccccccccccccccCCeeEEEEeeCCCCCeEE
Q 048017 306 DAEVMVCGGAPAGAFIKSDKESVYVEASRTCGRLKVTDKYPVWSM 350 (566)
Q Consensus 306 ~gkI~v~GG~~~~~~~~~~~~~~~~pa~~s~~~~d~~~~~~~W~~ 350 (566)
+++||++||.+.+. .++++|+|||. +++|+.
T Consensus 446 ~~~IYviGG~~~~~------------~~~~ve~Yd~~--~~~W~~ 476 (480)
T PHA02790 446 DNKLLLIGGFYRGS------------YIDTIEVYNNR--TYSWNI 476 (480)
T ss_pred CCEEEEECCcCCCc------------ccceEEEEECC--CCeEEe
Confidence 89999999976321 14689999997 599975
No 15
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=99.94 E-value=3.5e-25 Score=235.45 Aligned_cols=281 Identities=14% Similarity=0.098 Sum_probs=183.3
Q ss_pred ceEEccCCCccceeEEEEeeCCeEEEEeccCCCCCCCCCCCCccccCCCCCCCcccceEEEEECC--CCcEEeCcCCC-c
Q 048017 53 QWVLLQSSIGISAMHMQVLNNDKVIIFDRTDMGPSNLSLPIDKCRKEGDVGQLDCTAHSVLYDIA--SNTFRPLLLQT-D 129 (566)
Q Consensus 53 ~W~~l~~~~~~~a~h~~~l~~gkV~~~gg~~~~~s~~~~p~G~~~~~~~~~~~~~~~~~~~yDp~--t~~w~~l~~~~-~ 129 (566)
.++.+++++..+..+++++.+++||++||... .....||+. +++|+.++.++ .
T Consensus 18 ~~~~l~~lP~~~~~~~~~~~~~~iyv~gG~~~------------------------~~~~~~d~~~~~~~W~~l~~~p~~ 73 (376)
T PRK14131 18 NAEQLPDLPVPFKNGTGAIDNNTVYVGLGSAG------------------------TSWYKLDLNAPSKGWTKIAAFPGG 73 (376)
T ss_pred ecccCCCCCcCccCCeEEEECCEEEEEeCCCC------------------------CeEEEEECCCCCCCeEECCcCCCC
Confidence 34455544333333466668999999998531 125678876 58899998765 3
Q ss_pred ccccCCeecCCCcEEEEcCCCC----C----CCeEEEEcCCCCCCCcccccCcccccccCcceEEEecCCcEEEEcCccC
Q 048017 130 TWCSSGAVLSDGTLVQTGGYNV----G----DRVIRLFTPCNDEGCDWVELSKNLWDRRWYASNQILPDNRIIVVGGRRV 201 (566)
Q Consensus 130 ~~c~~~~~l~dG~l~vvGG~~~----g----~~~v~~ydP~~~~t~~W~~~~~~M~~~R~y~s~~~L~dG~VyvvGG~~~ 201 (566)
.++...++..+++||++||... + .+.+++|||. +++|+.++..++..|..++++++.|++|||+||.+.
T Consensus 74 ~r~~~~~v~~~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~---~n~W~~~~~~~p~~~~~~~~~~~~~~~IYv~GG~~~ 150 (376)
T PRK14131 74 PREQAVAAFIDGKLYVFGGIGKTNSEGSPQVFDDVYKYDPK---TNSWQKLDTRSPVGLAGHVAVSLHNGKAYITGGVNK 150 (376)
T ss_pred CcccceEEEECCEEEEEcCCCCCCCCCceeEcccEEEEeCC---CCEEEeCCCCCCCcccceEEEEeeCCEEEEECCCCH
Confidence 5666666677999999999753 1 3679999999 899999885246677777777745999999999642
Q ss_pred --------------------------------------CeEEEE-eCCCCCCCeeeeccccccCCCCCCCCccceEEEec
Q 048017 202 --------------------------------------FTYEFY-PKIDSLSSSLYLRFLIETRDPGEENNLYPFLHLLP 242 (566)
Q Consensus 202 --------------------------------------~s~E~y-P~~~~~~~w~~~p~l~~~~d~~~~~~~yp~~~~l~ 242 (566)
..+|+| |.++ .|...+.+... ....++++..
T Consensus 151 ~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~YD~~t~---~W~~~~~~p~~-------~~~~~a~v~~ 220 (376)
T PRK14131 151 NIFDGYFEDLAAAGKDKTPKDKINDAYFDKKPEDYFFNKEVLSYDPSTN---QWKNAGESPFL-------GTAGSAVVIK 220 (376)
T ss_pred HHHHHHHhhhhhcccchhhhhhhHHHHhcCChhhcCcCceEEEEECCCC---eeeECCcCCCC-------CCCcceEEEE
Confidence 357899 8875 78754322210 1223456677
Q ss_pred CCcEEEEEcCe------eE----EEeccCCeEEEeecccCCCCCCccC--C--CC--ceeeecccccCCCCCCCCCCCCC
Q 048017 243 DGNLFIFANRR------SI----LFDYINNKLVKEFPVIPGNDKRNYP--S--TG--SSILLPVKLSAGSDGNGTAALPD 306 (566)
Q Consensus 243 ~G~Ifv~Gg~~------~e----~yDp~t~~W~~~~p~lp~~~~r~~~--~--~g--~avllpl~~~~~~~~~~y~~~~~ 306 (566)
+++||++||.. .+ .||+++++|. .+++||. +|..+ . .+ ++++ +
T Consensus 221 ~~~iYv~GG~~~~~~~~~~~~~~~~~~~~~~W~-~~~~~p~--~~~~~~~~~~~~~~a~~~------------------~ 279 (376)
T PRK14131 221 GNKLWLINGEIKPGLRTDAVKQGKFTGNNLKWQ-KLPDLPP--APGGSSQEGVAGAFAGYS------------------N 279 (376)
T ss_pred CCEEEEEeeeECCCcCChhheEEEecCCCccee-ecCCCCC--CCcCCcCCccceEeceeE------------------C
Confidence 99999999942 22 4588999998 5887765 23211 0 11 1222 7
Q ss_pred CEEEEEcCCCCCcccc-ccccccc----cccCCeeEEEEeeCCCCCeEEe-ccCCCcccceeEEccCCeEEEEcCCCCCC
Q 048017 307 AEVMVCGGAPAGAFIK-SDKESVY----VEASRTCGRLKVTDKYPVWSME-FMPMPRVMSDMLLLPSGDVIIINGASNGT 380 (566)
Q Consensus 307 gkI~v~GG~~~~~~~~-~~~~~~~----~pa~~s~~~~d~~~~~~~W~~~-~M~~~R~~~~~vvLpdG~V~vvGG~~~g~ 380 (566)
++|||+||........ ...+..+ .....++|+||+. +++|+.. +||.+|.++.++++ +|+|||+||...+.
T Consensus 280 ~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~--~~~W~~~~~lp~~r~~~~av~~-~~~iyv~GG~~~~~ 356 (376)
T PRK14131 280 GVLLVAGGANFPGARENYQNGKLYAHEGLKKSWSDEIYALV--NGKWQKVGELPQGLAYGVSVSW-NNGVLLIGGETAGG 356 (376)
T ss_pred CEEEEeeccCCCCChhhhhcCCcccccCCcceeehheEEec--CCcccccCcCCCCccceEEEEe-CCEEEEEcCCCCCC
Confidence 8999999975211000 0000000 0112357899997 4899987 99999999887666 99999999975321
Q ss_pred CCC--ccccCc-CCcEE
Q 048017 381 AGW--EDAEEP-DRRFV 394 (566)
Q Consensus 381 ~~~--~~~ydP-t~~Wt 394 (566)
... ..+|+| +++++
T Consensus 357 ~~~~~v~~~~~~~~~~~ 373 (376)
T PRK14131 357 KAVSDVTLLSWDGKKLT 373 (376)
T ss_pred cEeeeEEEEEEcCCEEE
Confidence 111 135666 44444
No 16
>PHA03098 kelch-like protein; Provisional
Probab=99.93 E-value=7.8e-25 Score=243.18 Aligned_cols=242 Identities=13% Similarity=0.167 Sum_probs=182.0
Q ss_pred eEEEEECCCCcEEeCcCCCcccccCCeecCCCcEEEEcCCCC---CCCeEEEEcCCCCCCCcccccCcccccccCcceEE
Q 048017 110 HSVLYDIASNTFRPLLLQTDTWCSSGAVLSDGTLVQTGGYNV---GDRVIRLFTPCNDEGCDWVELSKNLWDRRWYASNQ 186 (566)
Q Consensus 110 ~~~~yDp~t~~w~~l~~~~~~~c~~~~~l~dG~l~vvGG~~~---g~~~v~~ydP~~~~t~~W~~~~~~M~~~R~y~s~~ 186 (566)
...+|++.+++|..+...+...|. +++..+++||++||... ..+.+.+||+. +++|..+++ |+.+|.+++++
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~---~~~W~~~~~-~~~~R~~~~~~ 339 (534)
T PHA03098 265 NYITNYSPLSEINTIIDIHYVYCF-GSVVLNNVIYFIGGMNKNNLSVNSVVSYDTK---TKSWNKVPE-LIYPRKNPGVT 339 (534)
T ss_pred eeeecchhhhhcccccCccccccc-eEEEECCEEEEECCCcCCCCeeccEEEEeCC---CCeeeECCC-CCcccccceEE
Confidence 356899999999998766555554 45556999999999853 23578999999 999999998 99999999988
Q ss_pred EecCCcEEEEcCccC----CeEEEE-eCCCCCCCeeee-ccccccCCCCCCCCccceEEEecCCcEEEEEc--------C
Q 048017 187 ILPDNRIIVVGGRRV----FTYEFY-PKIDSLSSSLYL-RFLIETRDPGEENNLYPFLHLLPDGNLFIFAN--------R 252 (566)
Q Consensus 187 ~L~dG~VyvvGG~~~----~s~E~y-P~~~~~~~w~~~-p~l~~~~d~~~~~~~yp~~~~l~~G~Ifv~Gg--------~ 252 (566)
++ +|+||++||.+. .++|+| |.++ +|... ++... .+.++.+..+|+||++|| +
T Consensus 340 ~~-~~~lyv~GG~~~~~~~~~v~~yd~~~~---~W~~~~~lp~~---------r~~~~~~~~~~~iYv~GG~~~~~~~~~ 406 (534)
T PHA03098 340 VF-NNRIYVIGGIYNSISLNTVESWKPGES---KWREEPPLIFP---------RYNPCVVNVNNLIYVIGGISKNDELLK 406 (534)
T ss_pred EE-CCEEEEEeCCCCCEecceEEEEcCCCC---ceeeCCCcCcC---------CccceEEEECCEEEEECCcCCCCcccc
Confidence 88 899999999863 368999 8775 78654 33322 233455677999999999 3
Q ss_pred eeEEEeccCCeEEEeecccCCCCCCccCCCCceeeecccccCCCCCCCCCCCCCCEEEEEcCCCCCcccccccccccccc
Q 048017 253 RSILFDYINNKLVKEFPVIPGNDKRNYPSTGSSILLPVKLSAGSDGNGTAALPDAEVMVCGGAPAGAFIKSDKESVYVEA 332 (566)
Q Consensus 253 ~~e~yDp~t~~W~~~~p~lp~~~~r~~~~~g~avllpl~~~~~~~~~~y~~~~~gkI~v~GG~~~~~~~~~~~~~~~~pa 332 (566)
++++||+.+++|. .++++|. +|.. +++++. +++||++||...... ...
T Consensus 407 ~v~~yd~~t~~W~-~~~~~p~--~r~~--~~~~~~------------------~~~iyv~GG~~~~~~---------~~~ 454 (534)
T PHA03098 407 TVECFSLNTNKWS-KGSPLPI--SHYG--GCAIYH------------------DGKIYVIGGISYIDN---------IKV 454 (534)
T ss_pred eEEEEeCCCCeee-ecCCCCc--cccC--ceEEEE------------------CCEEEEECCccCCCC---------Ccc
Confidence 5799999999998 5786765 3543 122222 899999999752110 012
Q ss_pred CCeeEEEEeeCCCCCeEEe-ccCCCcccceeEEccCCeEEEEcCCCCCC-CCCccccCc-CCcEEeccCCCCCCc
Q 048017 333 SRTCGRLKVTDKYPVWSME-FMPMPRVMSDMLLLPSGDVIIINGASNGT-AGWEDAEEP-DRRFVVLNPSKIPRM 404 (566)
Q Consensus 333 ~~s~~~~d~~~~~~~W~~~-~M~~~R~~~~~vvLpdG~V~vvGG~~~g~-~~~~~~ydP-t~~Wt~~~~~~~~R~ 404 (566)
.+.+++||+. +++|+.. +|+.+|..++++++ +|+|||+||..... ....++||| +++|+.+..++....
T Consensus 455 ~~~v~~yd~~--~~~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~~ 526 (534)
T PHA03098 455 YNIVESYNPV--TNKWTELSSLNFPRINASLCIF-NNKIYVVGGDKYEYYINEIEVYDDKTNTWTLFCKFPKVIG 526 (534)
T ss_pred cceEEEecCC--CCceeeCCCCCcccccceEEEE-CCEEEEEcCCcCCcccceeEEEeCCCCEEEecCCCccccc
Confidence 4569999987 5899998 89999999887776 99999999986321 112368999 999999887654443
No 17
>PLN02193 nitrile-specifier protein
Probab=99.93 E-value=3e-24 Score=234.45 Aligned_cols=269 Identities=15% Similarity=0.183 Sum_probs=190.1
Q ss_pred CCceEEccC---CCccceeEEEEeeCCeEEEEeccCCCCCCCCCCCCccccCCCCCCCcccceEEEEECCCCcEEeCcCC
Q 048017 51 GGQWVLLQS---SIGISAMHMQVLNNDKVIIFDRTDMGPSNLSLPIDKCRKEGDVGQLDCTAHSVLYDIASNTFRPLLLQ 127 (566)
Q Consensus 51 ~g~W~~l~~---~~~~~a~h~~~l~~gkV~~~gg~~~~~s~~~~p~G~~~~~~~~~~~~~~~~~~~yDp~t~~w~~l~~~ 127 (566)
.++|..+.+ .+..|..|+++..+++||++||...... . ....+++||+.+++|+.++.+
T Consensus 150 ~~~W~~~~~~~~~P~pR~~h~~~~~~~~iyv~GG~~~~~~-------~-----------~~~~v~~yD~~~~~W~~~~~~ 211 (470)
T PLN02193 150 LGKWIKVEQKGEGPGLRCSHGIAQVGNKIYSFGGEFTPNQ-------P-----------IDKHLYVFDLETRTWSISPAT 211 (470)
T ss_pred hceEEEcccCCCCCCCccccEEEEECCEEEEECCcCCCCC-------C-----------eeCcEEEEECCCCEEEeCCCC
Confidence 379998875 2446778999989999999999641110 0 113588999999999987643
Q ss_pred ---Ccc-cccCCeecCCCcEEEEcCCCC--CCCeEEEEcCCCCCCCcccccCccc---ccccCcceEEEecCCcEEEEcC
Q 048017 128 ---TDT-WCSSGAVLSDGTLVQTGGYNV--GDRVIRLFTPCNDEGCDWVELSKNL---WDRRWYASNQILPDNRIIVVGG 198 (566)
Q Consensus 128 ---~~~-~c~~~~~l~dG~l~vvGG~~~--g~~~v~~ydP~~~~t~~W~~~~~~M---~~~R~y~s~~~L~dG~VyvvGG 198 (566)
+.. ++...++..+++||++||... ..+.+++|||. +++|+++++ | +.+|.+|+++++ +++|||+||
T Consensus 212 g~~P~~~~~~~~~v~~~~~lYvfGG~~~~~~~ndv~~yD~~---t~~W~~l~~-~~~~P~~R~~h~~~~~-~~~iYv~GG 286 (470)
T PLN02193 212 GDVPHLSCLGVRMVSIGSTLYVFGGRDASRQYNGFYSFDTT---TNEWKLLTP-VEEGPTPRSFHSMAAD-EENVYVFGG 286 (470)
T ss_pred CCCCCCcccceEEEEECCEEEEECCCCCCCCCccEEEEECC---CCEEEEcCc-CCCCCCCccceEEEEE-CCEEEEECC
Confidence 222 334455667999999999753 25789999999 899999887 7 788999988877 899999999
Q ss_pred ccCCeEEEEeCCCCCCCeeeeccccccCCCCCCCCccceEEEecCCcEEEEEcCeeEEEeccCCeEEEeecccC-CCCCC
Q 048017 199 RRVFTYEFYPKIDSLSSSLYLRFLIETRDPGEENNLYPFLHLLPDGNLFIFANRRSILFDYINNKLVKEFPVIP-GNDKR 277 (566)
Q Consensus 199 ~~~~s~E~yP~~~~~~~w~~~p~l~~~~d~~~~~~~yp~~~~l~~G~Ifv~Gg~~~e~yDp~t~~W~~~~p~lp-~~~~r 277 (566)
.+... . + ++.++||+.+++|. .+++.. +...|
T Consensus 287 ~~~~~------------~-----~-----------------------------~~~~~yd~~t~~W~-~~~~~~~~~~~R 319 (470)
T PLN02193 287 VSATA------------R-----L-----------------------------KTLDSYNIVDKKWF-HCSTPGDSFSIR 319 (470)
T ss_pred CCCCC------------C-----c-----------------------------ceEEEEECCCCEEE-eCCCCCCCCCCC
Confidence 64210 0 0 13568999999998 465311 11234
Q ss_pred ccCCCCceeeecccccCCCCCCCCCCCCCCEEEEEcCCCCCccccccccccccccCCeeEEEEeeCCCCCeEEe-cc---
Q 048017 278 NYPSTGSSILLPVKLSAGSDGNGTAALPDAEVMVCGGAPAGAFIKSDKESVYVEASRTCGRLKVTDKYPVWSME-FM--- 353 (566)
Q Consensus 278 ~~~~~g~avllpl~~~~~~~~~~y~~~~~gkI~v~GG~~~~~~~~~~~~~~~~pa~~s~~~~d~~~~~~~W~~~-~M--- 353 (566)
.. ++++++ +++||++||.+.. .++++++||+. +++|+.. .|
T Consensus 320 ~~--~~~~~~------------------~gkiyviGG~~g~-------------~~~dv~~yD~~--t~~W~~~~~~g~~ 364 (470)
T PLN02193 320 GG--AGLEVV------------------QGKVWVVYGFNGC-------------EVDDVHYYDPV--QDKWTQVETFGVR 364 (470)
T ss_pred CC--cEEEEE------------------CCcEEEEECCCCC-------------ccCceEEEECC--CCEEEEeccCCCC
Confidence 43 122322 7899999997521 14678999997 5899976 44
Q ss_pred CCCcccceeEEccCCeEEEEcCCCCCC------CC-C---ccccCc-CCcEEeccCC------CCCCcceeEE--EEcCC
Q 048017 354 PMPRVMSDMLLLPSGDVIIINGASNGT------AG-W---EDAEEP-DRRFVVLNPS------KIPRMYHSSA--VVLPD 414 (566)
Q Consensus 354 ~~~R~~~~~vvLpdG~V~vvGG~~~g~------~~-~---~~~ydP-t~~Wt~~~~~------~~~R~yhs~a--~Llpd 414 (566)
|.+|..++++++ +++|||+||..... .+ + ..+||| +++|+.+..+ +.+|..|+.+ .+..+
T Consensus 365 P~~R~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~t~~W~~~~~~~~~~~~P~~R~~~~~~~~~~~~~ 443 (470)
T PLN02193 365 PSERSVFASAAV-GKHIVIFGGEIAMDPLAHVGPGQLTDGTFALDTETLQWERLDKFGEEEETPSSRGWTASTTGTIDGK 443 (470)
T ss_pred CCCcceeEEEEE-CCEEEEECCccCCccccccCccceeccEEEEEcCcCEEEEcccCCCCCCCCCCCccccceeeEEcCC
Confidence 889999888766 99999999974210 11 1 247999 9999988643 5778888643 23223
Q ss_pred CcEEEecCCCC
Q 048017 415 GRILVGGSNPH 425 (566)
Q Consensus 415 G~V~v~GG~~~ 425 (566)
.++++.||...
T Consensus 444 ~~~~~fGG~~~ 454 (470)
T PLN02193 444 KGLVMHGGKAP 454 (470)
T ss_pred ceEEEEcCCCC
Confidence 44999999743
No 18
>PHA03098 kelch-like protein; Provisional
Probab=99.91 E-value=2.9e-23 Score=230.56 Aligned_cols=231 Identities=15% Similarity=0.163 Sum_probs=172.6
Q ss_pred CCceEEccCCCccceeEEEEeeCCeEEEEeccCCCCCCCCCCCCccccCCCCCCCcccceEEEEECCCCcEEeCcCCCcc
Q 048017 51 GGQWVLLQSSIGISAMHMQVLNNDKVIIFDRTDMGPSNLSLPIDKCRKEGDVGQLDCTAHSVLYDIASNTFRPLLLQTDT 130 (566)
Q Consensus 51 ~g~W~~l~~~~~~~a~h~~~l~~gkV~~~gg~~~~~s~~~~p~G~~~~~~~~~~~~~~~~~~~yDp~t~~w~~l~~~~~~ 130 (566)
.++|..++.. +.+..|++++.+++||++||.+... . ....+.+||+.+++|+.++.++.+
T Consensus 273 ~~~~~~~~~~-~~~~~~~~~~~~~~lyv~GG~~~~~--------~-----------~~~~v~~yd~~~~~W~~~~~~~~~ 332 (534)
T PHA03098 273 LSEINTIIDI-HYVYCFGSVVLNNVIYFIGGMNKNN--------L-----------SVNSVVSYDTKTKSWNKVPELIYP 332 (534)
T ss_pred hhhcccccCc-cccccceEEEECCEEEEECCCcCCC--------C-----------eeccEEEEeCCCCeeeECCCCCcc
Confidence 3578877543 3344567788899999999975211 0 123578999999999999988767
Q ss_pred cccCCeecCCCcEEEEcCCCC--CCCeEEEEcCCCCCCCcccccCcccccccCcceEEEecCCcEEEEcCccC-----Ce
Q 048017 131 WCSSGAVLSDGTLVQTGGYNV--GDRVIRLFTPCNDEGCDWVELSKNLWDRRWYASNQILPDNRIIVVGGRRV-----FT 203 (566)
Q Consensus 131 ~c~~~~~l~dG~l~vvGG~~~--g~~~v~~ydP~~~~t~~W~~~~~~M~~~R~y~s~~~L~dG~VyvvGG~~~-----~s 203 (566)
++..+++..+|+||++||... ..+++++|||. +++|+..++ |+.+|..++++++ +|+|||+||... .+
T Consensus 333 R~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~---~~~W~~~~~-lp~~r~~~~~~~~-~~~iYv~GG~~~~~~~~~~ 407 (534)
T PHA03098 333 RKNPGVTVFNNRIYVIGGIYNSISLNTVESWKPG---ESKWREEPP-LIFPRYNPCVVNV-NNLIYVIGGISKNDELLKT 407 (534)
T ss_pred cccceEEEECCEEEEEeCCCCCEecceEEEEcCC---CCceeeCCC-cCcCCccceEEEE-CCEEEEECCcCCCCcccce
Confidence 766677777999999999863 25789999999 899999998 9999999988887 899999999632 46
Q ss_pred EEEE-eCCCCCCCeeee-ccccccCCCCCCCCccceEEEecCCcEEEEEcC----------eeEEEeccCCeEEEeeccc
Q 048017 204 YEFY-PKIDSLSSSLYL-RFLIETRDPGEENNLYPFLHLLPDGNLFIFANR----------RSILFDYINNKLVKEFPVI 271 (566)
Q Consensus 204 ~E~y-P~~~~~~~w~~~-p~l~~~~d~~~~~~~yp~~~~l~~G~Ifv~Gg~----------~~e~yDp~t~~W~~~~p~l 271 (566)
+|+| |.++ .|... ++...+ +.+..+..+++||++||. .+++||+++++|+ .++++
T Consensus 408 v~~yd~~t~---~W~~~~~~p~~r---------~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~-~~~~~ 474 (534)
T PHA03098 408 VECFSLNTN---KWSKGSPLPISH---------YGGCAIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWT-ELSSL 474 (534)
T ss_pred EEEEeCCCC---eeeecCCCCccc---------cCceEEEECCEEEEECCccCCCCCcccceEEEecCCCCcee-eCCCC
Confidence 8999 8875 78654 333221 224456679999999994 2789999999998 57766
Q ss_pred CCCCCCccCCCCceeeecccccCCCCCCCCCCCCCCEEEEEcCCCCCccccccccccccccCCeeEEEEeeCCCCCeEEe
Q 048017 272 PGNDKRNYPSTGSSILLPVKLSAGSDGNGTAALPDAEVMVCGGAPAGAFIKSDKESVYVEASRTCGRLKVTDKYPVWSME 351 (566)
Q Consensus 272 p~~~~r~~~~~g~avllpl~~~~~~~~~~y~~~~~gkI~v~GG~~~~~~~~~~~~~~~~pa~~s~~~~d~~~~~~~W~~~ 351 (566)
|. +|.. ++++++ +++||++||..... ..+++++||+. +++|+..
T Consensus 475 ~~--~r~~--~~~~~~------------------~~~iyv~GG~~~~~------------~~~~v~~yd~~--~~~W~~~ 518 (534)
T PHA03098 475 NF--PRIN--ASLCIF------------------NNKIYVVGGDKYEY------------YINEIEVYDDK--TNTWTLF 518 (534)
T ss_pred Cc--cccc--ceEEEE------------------CCEEEEEcCCcCCc------------ccceeEEEeCC--CCEEEec
Confidence 54 4554 233333 78999999976321 24679999987 5899987
Q ss_pred -ccCC
Q 048017 352 -FMPM 355 (566)
Q Consensus 352 -~M~~ 355 (566)
.+|.
T Consensus 519 ~~~p~ 523 (534)
T PHA03098 519 CKFPK 523 (534)
T ss_pred CCCcc
Confidence 6554
No 19
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=99.91 E-value=5.2e-23 Score=214.34 Aligned_cols=233 Identities=16% Similarity=0.157 Sum_probs=163.5
Q ss_pred ceEEccCCCccceeEEEEeeCCeEEEEeccCCCCCCCCCCCCccccCCCCCCCcccceEEEEECCCCcE----EeCcCCC
Q 048017 53 QWVLLQSSIGISAMHMQVLNNDKVIIFDRTDMGPSNLSLPIDKCRKEGDVGQLDCTAHSVLYDIASNTF----RPLLLQT 128 (566)
Q Consensus 53 ~W~~l~~~~~~~a~h~~~l~~gkV~~~gg~~~~~s~~~~p~G~~~~~~~~~~~~~~~~~~~yDp~t~~w----~~l~~~~ 128 (566)
+|..+++++..++.|+++..+++||++||.+. .. ....+++||+.+++| +.++.++
T Consensus 52 ~W~~~~~lp~~r~~~~~~~~~~~lyviGG~~~-~~-------------------~~~~v~~~d~~~~~w~~~~~~~~~lp 111 (323)
T TIGR03548 52 KWVKDGQLPYEAAYGASVSVENGIYYIGGSNS-SE-------------------RFSSVYRITLDESKEELICETIGNLP 111 (323)
T ss_pred eEEEcccCCccccceEEEEECCEEEEEcCCCC-CC-------------------CceeEEEEEEcCCceeeeeeEcCCCC
Confidence 79999877666666766767999999999752 10 124689999999998 7778777
Q ss_pred cccccCCeecCCCcEEEEcCCCC--CCCeEEEEcCCCCCCCcccccCcccc-cccCcceEEEecCCcEEEEcCccCCeEE
Q 048017 129 DTWCSSGAVLSDGTLVQTGGYNV--GDRVIRLFTPCNDEGCDWVELSKNLW-DRRWYASNQILPDNRIIVVGGRRVFTYE 205 (566)
Q Consensus 129 ~~~c~~~~~l~dG~l~vvGG~~~--g~~~v~~ydP~~~~t~~W~~~~~~M~-~~R~y~s~~~L~dG~VyvvGG~~~~s~E 205 (566)
..++..++++.+++||++||..+ ..+++++|||. +++|+++++ |+ .+|..++++++ +++|||+||.+...
T Consensus 112 ~~~~~~~~~~~~~~iYv~GG~~~~~~~~~v~~yd~~---~~~W~~~~~-~p~~~r~~~~~~~~-~~~iYv~GG~~~~~-- 184 (323)
T TIGR03548 112 FTFENGSACYKDGTLYVGGGNRNGKPSNKSYLFNLE---TQEWFELPD-FPGEPRVQPVCVKL-QNELYVFGGGSNIA-- 184 (323)
T ss_pred cCccCceEEEECCEEEEEeCcCCCccCceEEEEcCC---CCCeeECCC-CCCCCCCcceEEEE-CCEEEEEcCCCCcc--
Confidence 77776677778999999999743 35789999999 899999987 87 47888877777 89999999964210
Q ss_pred EEeCCCCCCCeeeeccccccCCCCCCCCccceEEEecCCcEEEEEcCeeEEEeccCCeEEEeecccCCC-CCCccCCCCc
Q 048017 206 FYPKIDSLSSSLYLRFLIETRDPGEENNLYPFLHLLPDGNLFIFANRRSILFDYINNKLVKEFPVIPGN-DKRNYPSTGS 284 (566)
Q Consensus 206 ~yP~~~~~~~w~~~p~l~~~~d~~~~~~~yp~~~~l~~G~Ifv~Gg~~~e~yDp~t~~W~~~~p~lp~~-~~r~~~~~g~ 284 (566)
. .+.++||+++++|+ .+++|+.. .+|......+
T Consensus 185 ----------------~-----------------------------~~~~~yd~~~~~W~-~~~~~~~~~~p~~~~~~~~ 218 (323)
T TIGR03548 185 ----------------Y-----------------------------TDGYKYSPKKNQWQ-KVADPTTDSEPISLLGAAS 218 (323)
T ss_pred ----------------c-----------------------------cceEEEecCCCeeE-ECCCCCCCCCceeccceeE
Confidence 0 02468999999998 57755321 1332211111
Q ss_pred eeeecccccCCCCCCCCCCCCCCEEEEEcCCCCCcccccc------cc---------c----cccc-cCCeeEEEEeeCC
Q 048017 285 SILLPVKLSAGSDGNGTAALPDAEVMVCGGAPAGAFIKSD------KE---------S----VYVE-ASRTCGRLKVTDK 344 (566)
Q Consensus 285 avllpl~~~~~~~~~~y~~~~~gkI~v~GG~~~~~~~~~~------~~---------~----~~~p-a~~s~~~~d~~~~ 344 (566)
+++ .+++||++||.+...+.+.. .+ . ...+ -.+++++||+.
T Consensus 219 ~~~-----------------~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~-- 279 (323)
T TIGR03548 219 IKI-----------------NESLLLCIGGFNKDVYNDAVIDLATMKDESLKGYKKEYFLKPPEWYNWNRKILIYNVR-- 279 (323)
T ss_pred EEE-----------------CCCEEEEECCcCHHHHHHHHhhhhhccchhhhhhHHHHhCCCccccCcCceEEEEECC--
Confidence 222 16899999998632110000 00 0 0000 03579999998
Q ss_pred CCCeEEe-ccC-CCcccceeEEccCCeEEEEcCCCC
Q 048017 345 YPVWSME-FMP-MPRVMSDMLLLPSGDVIIINGASN 378 (566)
Q Consensus 345 ~~~W~~~-~M~-~~R~~~~~vvLpdG~V~vvGG~~~ 378 (566)
+++|+.. +|+ .+|..++++++ +++||++||..+
T Consensus 280 ~~~W~~~~~~p~~~r~~~~~~~~-~~~iyv~GG~~~ 314 (323)
T TIGR03548 280 TGKWKSIGNSPFFARCGAALLLT-GNNIFSINGELK 314 (323)
T ss_pred CCeeeEcccccccccCchheEEE-CCEEEEEecccc
Confidence 4899987 787 58988887766 999999999753
No 20
>PLN02193 nitrile-specifier protein
Probab=99.90 E-value=4.2e-22 Score=217.57 Aligned_cols=266 Identities=15% Similarity=0.127 Sum_probs=180.9
Q ss_pred ecCCCcEEEEcCCCC-CCCeEE--EEcCCCC-CCCcccccCc--ccccccCcceEEEecCCcEEEEcCccC------CeE
Q 048017 137 VLSDGTLVQTGGYNV-GDRVIR--LFTPCND-EGCDWVELSK--NLWDRRWYASNQILPDNRIIVVGGRRV------FTY 204 (566)
Q Consensus 137 ~l~dG~l~vvGG~~~-g~~~v~--~ydP~~~-~t~~W~~~~~--~M~~~R~y~s~~~L~dG~VyvvGG~~~------~s~ 204 (566)
++.+++|+.++|... ...++- +++|.+. ..++|.++.+ .++.+|..|+++++ +++|||+||... ..+
T Consensus 117 ~~~~~~ivgf~G~~~~~~~~ig~y~~~~~~~~~~~~W~~~~~~~~~P~pR~~h~~~~~-~~~iyv~GG~~~~~~~~~~~v 195 (470)
T PLN02193 117 VLQGGKIVGFHGRSTDVLHSLGAYISLPSTPKLLGKWIKVEQKGEGPGLRCSHGIAQV-GNKIYSFGGEFTPNQPIDKHL 195 (470)
T ss_pred EEcCCeEEEEeccCCCcEEeeEEEEecCCChhhhceEEEcccCCCCCCCccccEEEEE-CCEEEEECCcCCCCCCeeCcE
Confidence 346889999999752 234444 4487521 1379998765 25789999999988 799999999742 246
Q ss_pred EEE-eCCCCCCCeeeeccccccCCCCCCCCccceEEEecCCcEEEEEcC-------eeEEEeccCCeEEEeecccCC-CC
Q 048017 205 EFY-PKIDSLSSSLYLRFLIETRDPGEENNLYPFLHLLPDGNLFIFANR-------RSILFDYINNKLVKEFPVIPG-ND 275 (566)
Q Consensus 205 E~y-P~~~~~~~w~~~p~l~~~~d~~~~~~~yp~~~~l~~G~Ifv~Gg~-------~~e~yDp~t~~W~~~~p~lp~-~~ 275 (566)
++| +.++ .|...+.....- ......++.+..+++||++||. ++++||+++++|. .+++++. ..
T Consensus 196 ~~yD~~~~---~W~~~~~~g~~P----~~~~~~~~~v~~~~~lYvfGG~~~~~~~ndv~~yD~~t~~W~-~l~~~~~~P~ 267 (470)
T PLN02193 196 YVFDLETR---TWSISPATGDVP----HLSCLGVRMVSIGSTLYVFGGRDASRQYNGFYSFDTTTNEWK-LLTPVEEGPT 267 (470)
T ss_pred EEEECCCC---EEEeCCCCCCCC----CCcccceEEEEECCEEEEECCCCCCCCCccEEEEECCCCEEE-EcCcCCCCCC
Confidence 788 7764 787544221000 0011224456679999999993 5799999999998 4765521 22
Q ss_pred CCccCCCCceeeecccccCCCCCCCCCCCCCCEEEEEcCCCCCccccccccccccccCCeeEEEEeeCCCCCeEEe----
Q 048017 276 KRNYPSTGSSILLPVKLSAGSDGNGTAALPDAEVMVCGGAPAGAFIKSDKESVYVEASRTCGRLKVTDKYPVWSME---- 351 (566)
Q Consensus 276 ~r~~~~~g~avllpl~~~~~~~~~~y~~~~~gkI~v~GG~~~~~~~~~~~~~~~~pa~~s~~~~d~~~~~~~W~~~---- 351 (566)
+|.++ ++++. +++||++||.+... .++++++||+. +++|+..
T Consensus 268 ~R~~h--~~~~~------------------~~~iYv~GG~~~~~------------~~~~~~~yd~~--t~~W~~~~~~~ 313 (470)
T PLN02193 268 PRSFH--SMAAD------------------EENVYVFGGVSATA------------RLKTLDSYNIV--DKKWFHCSTPG 313 (470)
T ss_pred Cccce--EEEEE------------------CCEEEEECCCCCCC------------CcceEEEEECC--CCEEEeCCCCC
Confidence 46542 22222 78999999986321 24678999987 4899975
Q ss_pred ccCCCcccceeEEccCCeEEEEcCCCCCCC-CCccccCc-CCcEEeccCC---CCCCcceeEEEEcCCCcEEEecCCCCc
Q 048017 352 FMPMPRVMSDMLLLPSGDVIIINGASNGTA-GWEDAEEP-DRRFVVLNPS---KIPRMYHSSAVVLPDGRILVGGSNPHR 426 (566)
Q Consensus 352 ~M~~~R~~~~~vvLpdG~V~vvGG~~~g~~-~~~~~ydP-t~~Wt~~~~~---~~~R~yhs~a~LlpdG~V~v~GG~~~~ 426 (566)
.|+.+|..+.++++ +|+||++||.+ +.. ....+||| +++|+.++++ +.+|..|+++++ +++|||.||....
T Consensus 314 ~~~~~R~~~~~~~~-~gkiyviGG~~-g~~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~~~~--~~~iyv~GG~~~~ 389 (470)
T PLN02193 314 DSFSIRGGAGLEVV-QGKVWVVYGFN-GCEVDDVHYYDPVQDKWTQVETFGVRPSERSVFASAAV--GKHIVIFGGEIAM 389 (470)
T ss_pred CCCCCCCCcEEEEE-CCcEEEEECCC-CCccCceEEEECCCCEEEEeccCCCCCCCcceeEEEEE--CCEEEEECCccCC
Confidence 37788998887765 99999999975 322 12358999 9999998765 889999998877 9999999996431
Q ss_pred ccc-cCCCCCCCcceEEEEeccccC
Q 048017 427 RYN-FTAYPYPTDLSLEAFHPHYLD 450 (566)
Q Consensus 427 ~~~-~~~~~~~~~~~vE~y~Ppyl~ 450 (566)
... .... ......+++|+|...-
T Consensus 390 ~~~~~~~~-~~~~ndv~~~D~~t~~ 413 (470)
T PLN02193 390 DPLAHVGP-GQLTDGTFALDTETLQ 413 (470)
T ss_pred ccccccCc-cceeccEEEEEcCcCE
Confidence 100 0000 0012358999998753
No 21
>PLN02153 epithiospecifier protein
Probab=99.90 E-value=3.2e-22 Score=209.94 Aligned_cols=251 Identities=16% Similarity=0.189 Sum_probs=169.2
Q ss_pred CCCCcEEeCcC----CCcccccCCeecCCCcEEEEcCCCCC----CCeEEEEcCCCCCCCcccccCcccc-cccC---cc
Q 048017 116 IASNTFRPLLL----QTDTWCSSGAVLSDGTLVQTGGYNVG----DRVIRLFTPCNDEGCDWVELSKNLW-DRRW---YA 183 (566)
Q Consensus 116 p~t~~w~~l~~----~~~~~c~~~~~l~dG~l~vvGG~~~g----~~~v~~ydP~~~~t~~W~~~~~~M~-~~R~---y~ 183 (566)
|..++|+.+.. ++.+++..+++..+++|||+||.... .+.+++||+. +++|++++. |. .+|. .+
T Consensus 4 ~~~~~W~~~~~~~~~~P~pR~~h~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~---~~~W~~~~~-~~~~p~~~~~~~ 79 (341)
T PLN02153 4 TLQGGWIKVEQKGGKGPGPRCSHGIAVVGDKLYSFGGELKPNEHIDKDLYVFDFN---THTWSIAPA-NGDVPRISCLGV 79 (341)
T ss_pred ccCCeEEEecCCCCCCCCCCCcceEEEECCEEEEECCccCCCCceeCcEEEEECC---CCEEEEcCc-cCCCCCCccCce
Confidence 46678998865 44556555666679999999997421 3579999999 899999876 53 4543 46
Q ss_pred eEEEecCCcEEEEcCccCCeEEEEeCCCCCCCeeeeccccccCCCCCCCCccceEEEecCCcEEEEEcCeeEEEeccCCe
Q 048017 184 SNQILPDNRIIVVGGRRVFTYEFYPKIDSLSSSLYLRFLIETRDPGEENNLYPFLHLLPDGNLFIFANRRSILFDYINNK 263 (566)
Q Consensus 184 s~~~L~dG~VyvvGG~~~~s~E~yP~~~~~~~w~~~p~l~~~~d~~~~~~~yp~~~~l~~G~Ifv~Gg~~~e~yDp~t~~ 263 (566)
+++++ +++|||+||..... . + +++++||+++++
T Consensus 80 ~~~~~-~~~iyv~GG~~~~~------------~-----~-----------------------------~~v~~yd~~t~~ 112 (341)
T PLN02153 80 RMVAV-GTKLYIFGGRDEKR------------E-----F-----------------------------SDFYSYDTVKNE 112 (341)
T ss_pred EEEEE-CCEEEEECCCCCCC------------c-----c-----------------------------CcEEEEECCCCE
Confidence 66777 89999999964210 0 0 135789999999
Q ss_pred EEEeecccCC---CCCCccCCCCceeeecccccCCCCCCCCCCCCCCEEEEEcCCCCCccccccccccccccCCeeEEEE
Q 048017 264 LVKEFPVIPG---NDKRNYPSTGSSILLPVKLSAGSDGNGTAALPDAEVMVCGGAPAGAFIKSDKESVYVEASRTCGRLK 340 (566)
Q Consensus 264 W~~~~p~lp~---~~~r~~~~~g~avllpl~~~~~~~~~~y~~~~~gkI~v~GG~~~~~~~~~~~~~~~~pa~~s~~~~d 340 (566)
|. .+++|+. ..+|..+ +++++ +++|||+||........ ....++++++||
T Consensus 113 W~-~~~~~~~~~~p~~R~~~--~~~~~------------------~~~iyv~GG~~~~~~~~------~~~~~~~v~~yd 165 (341)
T PLN02153 113 WT-FLTKLDEEGGPEARTFH--SMASD------------------ENHVYVFGGVSKGGLMK------TPERFRTIEAYN 165 (341)
T ss_pred EE-EeccCCCCCCCCCceee--EEEEE------------------CCEEEEECCccCCCccC------CCcccceEEEEE
Confidence 98 5776521 1245542 22322 78999999986322110 011346789999
Q ss_pred eeCCCCCeEEe-ccC---CCcccceeEEccCCeEEEEcCCCC-----CCC----CCccccCc-CCcEEeccC---CCCCC
Q 048017 341 VTDKYPVWSME-FMP---MPRVMSDMLLLPSGDVIIINGASN-----GTA----GWEDAEEP-DRRFVVLNP---SKIPR 403 (566)
Q Consensus 341 ~~~~~~~W~~~-~M~---~~R~~~~~vvLpdG~V~vvGG~~~-----g~~----~~~~~ydP-t~~Wt~~~~---~~~~R 403 (566)
+. +++|+.. +|. .+|..+.++++ +|+|||+||... |.. ...++||| +++|+.++. ++.+|
T Consensus 166 ~~--~~~W~~l~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~g~~P~~r 242 (341)
T PLN02153 166 IA--DGKWVQLPDPGENFEKRGGAGFAVV-QGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEVETTGAKPSAR 242 (341)
T ss_pred CC--CCeEeeCCCCCCCCCCCCcceEEEE-CCeEEEEeccccccccCCccceecCceEEEEcCCCcEEeccccCCCCCCc
Confidence 87 5899986 553 78888887665 999999998642 111 11357999 999999864 68899
Q ss_pred cceeEEEEcCCCcEEEecCCCCcccc-cCCCCCCCcceEEEEeccccC
Q 048017 404 MYHSSAVVLPDGRILVGGSNPHRRYN-FTAYPYPTDLSLEAFHPHYLD 450 (566)
Q Consensus 404 ~yhs~a~LlpdG~V~v~GG~~~~~~~-~~~~~~~~~~~vE~y~Ppyl~ 450 (566)
..|+++++ +++|||.||.....-. ..+ .......+++|+|....
T Consensus 243 ~~~~~~~~--~~~iyv~GG~~~~~~~~~~~-~~~~~n~v~~~d~~~~~ 287 (341)
T PLN02153 243 SVFAHAVV--GKYIIIFGGEVWPDLKGHLG-PGTLSNEGYALDTETLV 287 (341)
T ss_pred ceeeeEEE--CCEEEEECcccCCccccccc-cccccccEEEEEcCccE
Confidence 99987776 9999999996321000 000 00012368999997653
No 22
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=99.74 E-value=2.3e-16 Score=152.64 Aligned_cols=279 Identities=16% Similarity=0.211 Sum_probs=187.6
Q ss_pred ceEEccCCCccceeEEEEeeCCeEEEEeccCCCCCCCCCCCCccccCCCCCCCcccceEEEEECCCCcEEeCcCC-----
Q 048017 53 QWVLLQSSIGISAMHMQVLNNDKVIIFDRTDMGPSNLSLPIDKCRKEGDVGQLDCTAHSVLYDIASNTFRPLLLQ----- 127 (566)
Q Consensus 53 ~W~~l~~~~~~~a~h~~~l~~gkV~~~gg~~~~~s~~~~p~G~~~~~~~~~~~~~~~~~~~yDp~t~~w~~l~~~----- 127 (566)
+|+.-..--+.+.-|+++-.+.+||-+||+-.|.. . +++. .-.+.+++..+-+|+.+++.
T Consensus 3 ~WTVHLeGGPrRVNHAavaVG~riYSFGGYCsGed---------y---~~~~---piDVH~lNa~~~RWtk~pp~~~ka~ 67 (392)
T KOG4693|consen 3 TWTVHLEGGPRRVNHAAVAVGSRIYSFGGYCSGED---------Y---DAKD---PIDVHVLNAENYRWTKMPPGITKAT 67 (392)
T ss_pred eEEEEecCCcccccceeeeecceEEecCCcccccc---------c---ccCC---cceeEEeeccceeEEecCccccccc
Confidence 57776544556677999989999999999853321 0 1111 13467889999999988751
Q ss_pred --------CcccccCCeecCCCcEEEEcCCCC--C-CCeEEEEcCCCCCCCcccccC--cccccccCcceEEEecCCcEE
Q 048017 128 --------TDTWCSSGAVLSDGTLVQTGGYNV--G-DRVIRLFTPCNDEGCDWVELS--KNLWDRRWYASNQILPDNRII 194 (566)
Q Consensus 128 --------~~~~c~~~~~l~dG~l~vvGG~~~--g-~~~v~~ydP~~~~t~~W~~~~--~~M~~~R~y~s~~~L~dG~Vy 194 (566)
+-.++...+++.++++|+-||.++ + .+....|||. +++|.+.. .-++-.|-.|++|++ ++.+|
T Consensus 68 i~~~yp~VPyqRYGHtvV~y~d~~yvWGGRND~egaCN~Ly~fDp~---t~~W~~p~v~G~vPgaRDGHsAcV~-gn~My 143 (392)
T KOG4693|consen 68 IESPYPAVPYQRYGHTVVEYQDKAYVWGGRNDDEGACNLLYEFDPE---TNVWKKPEVEGFVPGARDGHSACVW-GNQMY 143 (392)
T ss_pred ccCCCCccchhhcCceEEEEcceEEEEcCccCcccccceeeeeccc---cccccccceeeecCCccCCceeeEE-CcEEE
Confidence 224667778888999999999875 3 3667899999 99998643 236778999999999 78999
Q ss_pred EEcCccCCeEEEEeCCCCCCCeeeeccccccCCCCCCCCccceEEEecCCcEEEEEcCeeEEEeccCCeEEEeecccCCC
Q 048017 195 VVGGRRVFTYEFYPKIDSLSSSLYLRFLIETRDPGEENNLYPFLHLLPDGNLFIFANRRSILFDYINNKLVKEFPVIPGN 274 (566)
Q Consensus 195 vvGG~~~~s~E~yP~~~~~~~w~~~p~l~~~~d~~~~~~~yp~~~~l~~G~Ifv~Gg~~~e~yDp~t~~W~~~~p~lp~~ 274 (566)
|.||..... .+|. .+...+|..|-+|. .+-.. +.
T Consensus 144 iFGGye~~a-~~FS-------------------------------------------~d~h~ld~~TmtWr-~~~Tk-g~ 177 (392)
T KOG4693|consen 144 IFGGYEEDA-QRFS-------------------------------------------QDTHVLDFATMTWR-EMHTK-GD 177 (392)
T ss_pred EecChHHHH-Hhhh-------------------------------------------ccceeEeccceeee-ehhcc-CC
Confidence 999975311 0110 02335788888887 34221 11
Q ss_pred CCCccCCCCceeeecccccCCCCCCCCCCCCCCEEEEEcCCCCC--ccccccccccccccCCeeEEEEeeCCCCCeEE--
Q 048017 275 DKRNYPSTGSSILLPVKLSAGSDGNGTAALPDAEVMVCGGAPAG--AFIKSDKESVYVEASRTCGRLKVTDKYPVWSM-- 350 (566)
Q Consensus 275 ~~r~~~~~g~avllpl~~~~~~~~~~y~~~~~gkI~v~GG~~~~--~~~~~~~~~~~~pa~~s~~~~d~~~~~~~W~~-- 350 (566)
.+|+..+..++++ ++..||+||.... .|.. +...-.+....+|+. +..|..
T Consensus 178 PprwRDFH~a~~~------------------~~~MYiFGGR~D~~gpfHs-----~~e~Yc~~i~~ld~~--T~aW~r~p 232 (392)
T KOG4693|consen 178 PPRWRDFHTASVI------------------DGMMYIFGGRSDESGPFHS-----IHEQYCDTIMALDLA--TGAWTRTP 232 (392)
T ss_pred Cchhhhhhhhhhc------------------cceEEEeccccccCCCccc-----hhhhhcceeEEEecc--ccccccCC
Confidence 1343322333333 8999999997532 1110 000011233445655 588986
Q ss_pred e-c-cCCCcccceeEEccCCeEEEEcCCCCCCC--CCc--cccCc-CCcEEecc---CCCCCCcceeEEEEcCCCcEEEe
Q 048017 351 E-F-MPMPRVMSDMLLLPSGDVIIINGASNGTA--GWE--DAEEP-DRRFVVLN---PSKIPRMYHSSAVVLPDGRILVG 420 (566)
Q Consensus 351 ~-~-M~~~R~~~~~vvLpdG~V~vvGG~~~g~~--~~~--~~ydP-t~~Wt~~~---~~~~~R~yhs~a~LlpdG~V~v~ 420 (566)
+ . .|..|..|++-+. ||++|++||.+ |.- .+. .+||| +..|+.+. .-+.+|.-|++.+. .+||++.
T Consensus 233 ~~~~~P~GRRSHS~fvY-ng~~Y~FGGYn-g~ln~HfndLy~FdP~t~~W~~I~~~Gk~P~aRRRqC~~v~--g~kv~LF 308 (392)
T KOG4693|consen 233 ENTMKPGGRRSHSTFVY-NGKMYMFGGYN-GTLNVHFNDLYCFDPKTSMWSVISVRGKYPSARRRQCSVVS--GGKVYLF 308 (392)
T ss_pred CCCcCCCcccccceEEE-cceEEEecccc-hhhhhhhcceeecccccchheeeeccCCCCCcccceeEEEE--CCEEEEe
Confidence 3 3 5789999998776 99999999987 432 133 37899 99999864 46777887866665 9999999
Q ss_pred cCCCC
Q 048017 421 GSNPH 425 (566)
Q Consensus 421 GG~~~ 425 (566)
||..-
T Consensus 309 GGTsP 313 (392)
T KOG4693|consen 309 GGTSP 313 (392)
T ss_pred cCCCC
Confidence 99643
No 23
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=99.72 E-value=1.2e-16 Score=154.66 Aligned_cols=231 Identities=17% Similarity=0.248 Sum_probs=156.7
Q ss_pred CCceEEccCC-------------CccceeEEEEeeCCeEEEEeccCCCCCCCCCCCCccccCCCCCCCcccceEEEEECC
Q 048017 51 GGQWVLLQSS-------------IGISAMHMQVLNNDKVIIFDRTDMGPSNLSLPIDKCRKEGDVGQLDCTAHSVLYDIA 117 (566)
Q Consensus 51 ~g~W~~l~~~-------------~~~~a~h~~~l~~gkV~~~gg~~~~~s~~~~p~G~~~~~~~~~~~~~~~~~~~yDp~ 117 (566)
.=+|..+++. +.-+..|.++..++|+|+|||.+... |.| +...+|||+
T Consensus 53 ~~RWtk~pp~~~ka~i~~~yp~VPyqRYGHtvV~y~d~~yvWGGRND~e-------gaC------------N~Ly~fDp~ 113 (392)
T KOG4693|consen 53 NYRWTKMPPGITKATIESPYPAVPYQRYGHTVVEYQDKAYVWGGRNDDE-------GAC------------NLLYEFDPE 113 (392)
T ss_pred ceeEEecCcccccccccCCCCccchhhcCceEEEEcceEEEEcCccCcc-------ccc------------ceeeeeccc
Confidence 3578887641 12245699999999999999986321 334 357899999
Q ss_pred CCcEEeCcC---CCcccccCCeecCCCcEEEEcCCCC----CCCeEEEEcCCCCCCCcccccCcccccccC--cceEEEe
Q 048017 118 SNTFRPLLL---QTDTWCSSGAVLSDGTLVQTGGYNV----GDRVIRLFTPCNDEGCDWVELSKNLWDRRW--YASNQIL 188 (566)
Q Consensus 118 t~~w~~l~~---~~~~~c~~~~~l~dG~l~vvGG~~~----g~~~v~~ydP~~~~t~~W~~~~~~M~~~R~--y~s~~~L 188 (566)
+++|..... .+..+-...+++.+..+||+||+.+ -++.+..+|-. +-+|+++...=.-+|| +|+++++
T Consensus 114 t~~W~~p~v~G~vPgaRDGHsAcV~gn~MyiFGGye~~a~~FS~d~h~ld~~---TmtWr~~~Tkg~PprwRDFH~a~~~ 190 (392)
T KOG4693|consen 114 TNVWKKPEVEGFVPGARDGHSACVWGNQMYIFGGYEEDAQRFSQDTHVLDFA---TMTWREMHTKGDPPRWRDFHTASVI 190 (392)
T ss_pred cccccccceeeecCCccCCceeeEECcEEEEecChHHHHHhhhccceeEecc---ceeeeehhccCCCchhhhhhhhhhc
Confidence 999987653 3444555567777999999999863 25678889988 8999988652223566 6888888
Q ss_pred cCCcEEEEcCccCCeEEEEeCCCCCCCeeeeccccccCCCCCCCCccceEEEecCCcEEEEEcCeeEEEeccCCeEEEee
Q 048017 189 PDNRIIVVGGRRVFTYEFYPKIDSLSSSLYLRFLIETRDPGEENNLYPFLHLLPDGNLFIFANRRSILFDYINNKLVKEF 268 (566)
Q Consensus 189 ~dG~VyvvGG~~~~s~E~yP~~~~~~~w~~~p~l~~~~d~~~~~~~yp~~~~l~~G~Ifv~Gg~~~e~yDp~t~~W~~~~ 268 (566)
|+++||.||+...+. |-. ..++ .| .. ....+|.+|+.|.+ -
T Consensus 191 -~~~MYiFGGR~D~~g---pfH----------s~~e---------~Y-------c~--------~i~~ld~~T~aW~r-~ 231 (392)
T KOG4693|consen 191 -DGMMYIFGGRSDESG---PFH----------SIHE---------QY-------CD--------TIMALDLATGAWTR-T 231 (392)
T ss_pred -cceEEEeccccccCC---Ccc----------chhh---------hh-------cc--------eeEEEecccccccc-C
Confidence 899999999864321 100 0001 01 01 12358999999985 4
Q ss_pred ccc---CCCCCCccCCCCceeeecccccCCCCCCCCCCCCCCEEEEEcCCCCCccccccccccccccCCeeEEEEeeCCC
Q 048017 269 PVI---PGNDKRNYPSTGSSILLPVKLSAGSDGNGTAALPDAEVMVCGGAPAGAFIKSDKESVYVEASRTCGRLKVTDKY 345 (566)
Q Consensus 269 p~l---p~~~~r~~~~~g~avllpl~~~~~~~~~~y~~~~~gkI~v~GG~~~~~~~~~~~~~~~~pa~~s~~~~d~~~~~ 345 (566)
|+- |.+ +|+ .++- .| ++++|++||.++.- .-..+...++||. +
T Consensus 232 p~~~~~P~G-RRS----HS~f-------------vY----ng~~Y~FGGYng~l----------n~HfndLy~FdP~--t 277 (392)
T KOG4693|consen 232 PENTMKPGG-RRS----HSTF-------------VY----NGKMYMFGGYNGTL----------NVHFNDLYCFDPK--T 277 (392)
T ss_pred CCCCcCCCc-ccc----cceE-------------EE----cceEEEecccchhh----------hhhhcceeecccc--c
Confidence 432 333 333 2222 24 89999999987321 0124667888887 4
Q ss_pred CCeEEe----ccCCCcccceeEEccCCeEEEEcCCC
Q 048017 346 PVWSME----FMPMPRVMSDMLLLPSGDVIIINGAS 377 (566)
Q Consensus 346 ~~W~~~----~M~~~R~~~~~vvLpdG~V~vvGG~~ 377 (566)
..|... .-|.+|...++++. ++|||++||..
T Consensus 278 ~~W~~I~~~Gk~P~aRRRqC~~v~-g~kv~LFGGTs 312 (392)
T KOG4693|consen 278 SMWSVISVRGKYPSARRRQCSVVS-GGKVYLFGGTS 312 (392)
T ss_pred chheeeeccCCCCCcccceeEEEE-CCEEEEecCCC
Confidence 789863 56788888887776 99999999976
No 24
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=99.52 E-value=1.4e-12 Score=142.78 Aligned_cols=255 Identities=15% Similarity=0.179 Sum_probs=176.3
Q ss_pred CccceeEEEEeeCCeEEEEeccCCCCCCCCCCCCccccCCCCCCCcccceEEEEECCCCcEEeCcC---CCcccccCCee
Q 048017 61 IGISAMHMQVLNNDKVIIFDRTDMGPSNLSLPIDKCRKEGDVGQLDCTAHSVLYDIASNTFRPLLL---QTDTWCSSGAV 137 (566)
Q Consensus 61 ~~~~a~h~~~l~~gkV~~~gg~~~~~s~~~~p~G~~~~~~~~~~~~~~~~~~~yDp~t~~w~~l~~---~~~~~c~~~~~ 137 (566)
+..++.|++++.++|+|++||...+.. .. . ..+.++|..+..|..... .+..+.+...+
T Consensus 58 p~~R~~hs~~~~~~~~~vfGG~~~~~~---------~~--------~-~dl~~~d~~~~~w~~~~~~g~~p~~r~g~~~~ 119 (482)
T KOG0379|consen 58 PIPRAGHSAVLIGNKLYVFGGYGSGDR---------LT--------D-LDLYVLDLESQLWTKPAATGDEPSPRYGHSLS 119 (482)
T ss_pred cchhhccceeEECCEEEEECCCCCCCc---------cc--------c-ceeEEeecCCcccccccccCCCCCcccceeEE
Confidence 455788999999999999999753211 00 0 137889999999987653 22333344455
Q ss_pred cCCCcEEEEcCCCC---CCCeEEEEcCCCCCCCcccccCc--ccccccCcceEEEecCCcEEEEcCccCCeEEEEeCCCC
Q 048017 138 LSDGTLVQTGGYNV---GDRVIRLFTPCNDEGCDWVELSK--NLWDRRWYASNQILPDNRIIVVGGRRVFTYEFYPKIDS 212 (566)
Q Consensus 138 l~dG~l~vvGG~~~---g~~~v~~ydP~~~~t~~W~~~~~--~M~~~R~y~s~~~L~dG~VyvvGG~~~~s~E~yP~~~~ 212 (566)
..+.+||++||... ..+.+.+||+. +++|+.+.. .++.+|++|++++. +.++||.||.+...
T Consensus 120 ~~~~~l~lfGG~~~~~~~~~~l~~~d~~---t~~W~~l~~~~~~P~~r~~Hs~~~~-g~~l~vfGG~~~~~--------- 186 (482)
T KOG0379|consen 120 AVGDKLYLFGGTDKKYRNLNELHSLDLS---TRTWSLLSPTGDPPPPRAGHSATVV-GTKLVVFGGIGGTG--------- 186 (482)
T ss_pred EECCeEEEEccccCCCCChhheEeccCC---CCcEEEecCcCCCCCCcccceEEEE-CCEEEEECCccCcc---------
Confidence 56899999999863 23588999999 999997753 36889999998888 79999999965210
Q ss_pred CCCeeeeccccccCCCCCCCCccceEEEecCCcEEEEEcCeeEEEeccCCeEEEeeccc-CCCCCCccCCCCceeeeccc
Q 048017 213 LSSSLYLRFLIETRDPGEENNLYPFLHLLPDGNLFIFANRRSILFDYINNKLVKEFPVI-PGNDKRNYPSTGSSILLPVK 291 (566)
Q Consensus 213 ~~~w~~~p~l~~~~d~~~~~~~yp~~~~l~~G~Ifv~Gg~~~e~yDp~t~~W~~~~p~l-p~~~~r~~~~~g~avllpl~ 291 (566)
. .+ ++.++||.++.+|.+ +... +...+|..+ ++++.
T Consensus 187 --~-----~~-----------------------------ndl~i~d~~~~~W~~-~~~~g~~P~pR~gH--~~~~~---- 223 (482)
T KOG0379|consen 187 --D-----SL-----------------------------NDLHIYDLETSTWSE-LDTQGEAPSPRYGH--AMVVV---- 223 (482)
T ss_pred --c-----ce-----------------------------eeeeeecccccccee-cccCCCCCCCCCCc--eEEEE----
Confidence 0 00 246789999999984 4321 111145542 22322
Q ss_pred ccCCCCCCCCCCCCCCEEEEEcCCCCCccccccccccccccCCeeEEEEeeCCCCCeEEe----ccCCCcccceeEEccC
Q 048017 292 LSAGSDGNGTAALPDAEVMVCGGAPAGAFIKSDKESVYVEASRTCGRLKVTDKYPVWSME----FMPMPRVMSDMLLLPS 367 (566)
Q Consensus 292 ~~~~~~~~~y~~~~~gkI~v~GG~~~~~~~~~~~~~~~~pa~~s~~~~d~~~~~~~W~~~----~M~~~R~~~~~vvLpd 367 (566)
+.+++++||...+. -.++++..+|+.. .+|... .+|.+|..|.+++. +
T Consensus 224 --------------~~~~~v~gG~~~~~-----------~~l~D~~~ldl~~--~~W~~~~~~g~~p~~R~~h~~~~~-~ 275 (482)
T KOG0379|consen 224 --------------GNKLLVFGGGDDGD-----------VYLNDVHILDLST--WEWKLLPTGGDLPSPRSGHSLTVS-G 275 (482)
T ss_pred --------------CCeEEEEeccccCC-----------ceecceEeeeccc--ceeeeccccCCCCCCcceeeeEEE-C
Confidence 78999999876221 1367889999874 889852 68899999998854 7
Q ss_pred CeEEEEcCCCCCCC-CCcc--ccCc-CCcEEeccCC----CCCCcceeEEEEcCCCcE
Q 048017 368 GDVIIINGASNGTA-GWED--AEEP-DRRFVVLNPS----KIPRMYHSSAVVLPDGRI 417 (566)
Q Consensus 368 G~V~vvGG~~~g~~-~~~~--~ydP-t~~Wt~~~~~----~~~R~yhs~a~LlpdG~V 417 (566)
.+++++||...+.. .+.+ .+|. ++.|+.+... +.+|.-|...+.-..+..
T Consensus 276 ~~~~l~gG~~~~~~~~l~~~~~l~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (482)
T KOG0379|consen 276 DHLLLFGGGTDPKQEPLGDLYGLDLETLVWSKVESVGVVRPSPRLGHAAELIDELGKD 333 (482)
T ss_pred CEEEEEcCCcccccccccccccccccccceeeeeccccccccccccccceeeccCCcc
Confidence 89999999874311 2333 4566 8999886544 567888877766555553
No 25
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=99.35 E-value=3.8e-11 Score=131.64 Aligned_cols=211 Identities=18% Similarity=0.243 Sum_probs=146.8
Q ss_pred ccccCCeecCCCcEEEEcCCCCC--CC--eEEEEcCCCCCCCcccccCc--ccccccCcceEEEecCCcEEEEcCccCCe
Q 048017 130 TWCSSGAVLSDGTLVQTGGYNVG--DR--VIRLFTPCNDEGCDWVELSK--NLWDRRWYASNQILPDNRIIVVGGRRVFT 203 (566)
Q Consensus 130 ~~c~~~~~l~dG~l~vvGG~~~g--~~--~v~~ydP~~~~t~~W~~~~~--~M~~~R~y~s~~~L~dG~VyvvGG~~~~s 203 (566)
.+....+++.+.+++|+||...+ .. ++.+||-. +..|..... .-+.+|..++.+++ +.++|++||.+...
T Consensus 60 ~R~~hs~~~~~~~~~vfGG~~~~~~~~~~dl~~~d~~---~~~w~~~~~~g~~p~~r~g~~~~~~-~~~l~lfGG~~~~~ 135 (482)
T KOG0379|consen 60 PRAGHSAVLIGNKLYVFGGYGSGDRLTDLDLYVLDLE---SQLWTKPAATGDEPSPRYGHSLSAV-GDKLYLFGGTDKKY 135 (482)
T ss_pred hhhccceeEECCEEEEECCCCCCCccccceeEEeecC---CcccccccccCCCCCcccceeEEEE-CCeEEEEccccCCC
Confidence 34444555569999999997532 22 48899988 788987643 24568989998988 79999999976310
Q ss_pred EEEEeCCCCCCCeeeeccccccCCCCCCCCccceEEEecCCcEEEEEcCeeEEEeccCCeEEEeecccCC-CCCCccCCC
Q 048017 204 YEFYPKIDSLSSSLYLRFLIETRDPGEENNLYPFLHLLPDGNLFIFANRRSILFDYINNKLVKEFPVIPG-NDKRNYPST 282 (566)
Q Consensus 204 ~E~yP~~~~~~~w~~~p~l~~~~d~~~~~~~yp~~~~l~~G~Ifv~Gg~~~e~yDp~t~~W~~~~p~lp~-~~~r~~~~~ 282 (566)
+. + ++...||..+++|.. +.+... ..+|..+
T Consensus 136 ------------~~----~-----------------------------~~l~~~d~~t~~W~~-l~~~~~~P~~r~~H-- 167 (482)
T KOG0379|consen 136 ------------RN----L-----------------------------NELHSLDLSTRTWSL-LSPTGDPPPPRAGH-- 167 (482)
T ss_pred ------------CC----h-----------------------------hheEeccCCCCcEEE-ecCcCCCCCCcccc--
Confidence 00 0 134579999999984 432221 2246543
Q ss_pred CceeeecccccCCCCCCCCCCCCCCEEEEEcCCCCCccccccccccccccCCeeEEEEeeCCCCCeEEe----ccCCCcc
Q 048017 283 GSSILLPVKLSAGSDGNGTAALPDAEVMVCGGAPAGAFIKSDKESVYVEASRTCGRLKVTDKYPVWSME----FMPMPRV 358 (566)
Q Consensus 283 g~avllpl~~~~~~~~~~y~~~~~gkI~v~GG~~~~~~~~~~~~~~~~pa~~s~~~~d~~~~~~~W~~~----~M~~~R~ 358 (566)
+++.. +.++||+||.+... ..++++++||+.. .+|... .-|.||.
T Consensus 168 -s~~~~-----------------g~~l~vfGG~~~~~-----------~~~ndl~i~d~~~--~~W~~~~~~g~~P~pR~ 216 (482)
T KOG0379|consen 168 -SATVV-----------------GTKLVVFGGIGGTG-----------DSLNDLHIYDLET--STWSELDTQGEAPSPRY 216 (482)
T ss_pred -eEEEE-----------------CCEEEEECCccCcc-----------cceeeeeeecccc--ccceecccCCCCCCCCC
Confidence 23321 78999999986321 1367899999974 779873 6788999
Q ss_pred cceeEEccCCeEEEEcCCCCCCCCCcccc--Cc-CCcEEec---cCCCCCCcceeEEEEcCCCcEEEecCCCCc
Q 048017 359 MSDMLLLPSGDVIIINGASNGTAGWEDAE--EP-DRRFVVL---NPSKIPRMYHSSAVVLPDGRILVGGSNPHR 426 (566)
Q Consensus 359 ~~~~vvLpdG~V~vvGG~~~g~~~~~~~y--dP-t~~Wt~~---~~~~~~R~yhs~a~LlpdG~V~v~GG~~~~ 426 (566)
.|.+++. ++++|++||...+...+.++| |- +-+|..+ ...+.+|++|+.++. ...+++.||+...
T Consensus 217 gH~~~~~-~~~~~v~gG~~~~~~~l~D~~~ldl~~~~W~~~~~~g~~p~~R~~h~~~~~--~~~~~l~gG~~~~ 287 (482)
T KOG0379|consen 217 GHAMVVV-GNKLLVFGGGDDGDVYLNDVHILDLSTWEWKLLPTGGDLPSPRSGHSLTVS--GDHLLLFGGGTDP 287 (482)
T ss_pred CceEEEE-CCeEEEEeccccCCceecceEeeecccceeeeccccCCCCCCcceeeeEEE--CCEEEEEcCCccc
Confidence 9998776 899999998763322234443 44 8889865 457889999988855 7788888887654
No 26
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=99.07 E-value=5.4e-09 Score=107.44 Aligned_cols=229 Identities=20% Similarity=0.271 Sum_probs=151.5
Q ss_pred CcEEEEcCCC-CC-----CCeEEEEcCCCCCCCcccccCc-ccccccCcceEEEecCCcEEEEcCccCCeEEEEeCCCCC
Q 048017 141 GTLVQTGGYN-VG-----DRVIRLFTPCNDEGCDWVELSK-NLWDRRWYASNQILPDNRIIVVGGRRVFTYEFYPKIDSL 213 (566)
Q Consensus 141 G~l~vvGG~~-~g-----~~~v~~ydP~~~~t~~W~~~~~-~M~~~R~y~s~~~L~dG~VyvvGG~~~~s~E~yP~~~~~ 213 (566)
..|+++||.. +| .+....||-. +++|+.+.. +-+.+|..|.+++.+.|.+++.||--.. |...
T Consensus 79 eELilfGGEf~ngqkT~vYndLy~Yn~k---~~eWkk~~spn~P~pRsshq~va~~s~~l~~fGGEfaS-----Pnq~-- 148 (521)
T KOG1230|consen 79 EELILFGGEFYNGQKTHVYNDLYSYNTK---KNEWKKVVSPNAPPPRSSHQAVAVPSNILWLFGGEFAS-----PNQE-- 148 (521)
T ss_pred ceeEEecceeecceeEEEeeeeeEEecc---ccceeEeccCCCcCCCccceeEEeccCeEEEeccccCC-----cchh--
Confidence 4899999954 33 2567789988 899998753 2567899999999998999999994210 2210
Q ss_pred CCeeeeccccccCCCCCCCCccceEEEecCCcEEEEEcCeeEEEeccCCeEEEeecccCCC-CCCccCCCCceeeecccc
Q 048017 214 SSSLYLRFLIETRDPGEENNLYPFLHLLPDGNLFIFANRRSILFDYINNKLVKEFPVIPGN-DKRNYPSTGSSILLPVKL 292 (566)
Q Consensus 214 ~~w~~~p~l~~~~d~~~~~~~yp~~~~l~~G~Ifv~Gg~~~e~yDp~t~~W~~~~p~lp~~-~~r~~~~~g~avllpl~~ 292 (566)
. .|+. .+.|+||.++++|++ +. .+++ .+|+.++ +.+
T Consensus 149 ------q-------------F~HY--------------kD~W~fd~~trkweq-l~-~~g~PS~RSGHR--Mva------ 185 (521)
T KOG1230|consen 149 ------Q-------------FHHY--------------KDLWLFDLKTRKWEQ-LE-FGGGPSPRSGHR--MVA------ 185 (521)
T ss_pred ------h-------------hhhh--------------hheeeeeeccchhee-ec-cCCCCCCCccce--eEE------
Confidence 0 1111 256899999999995 53 2332 2465432 222
Q ss_pred cCCCCCCCCCCCCCCEEEEEcCCCCCccccccccccccccCCeeEEEEeeCCCCCeEEe--c--cCCCcccceeEEccCC
Q 048017 293 SAGSDGNGTAALPDAEVMVCGGAPAGAFIKSDKESVYVEASRTCGRLKVTDKYPVWSME--F--MPMPRVMSDMLLLPSG 368 (566)
Q Consensus 293 ~~~~~~~~y~~~~~gkI~v~GG~~~~~~~~~~~~~~~~pa~~s~~~~d~~~~~~~W~~~--~--M~~~R~~~~~vvLpdG 368 (566)
| +-+|+++||.....- ..+| .+.++++|+. +=+|+.. + -|.+|+.+++.+.|+|
T Consensus 186 --------w----K~~lilFGGFhd~nr-----~y~Y---yNDvy~FdLd--tykW~Klepsga~PtpRSGcq~~vtpqg 243 (521)
T KOG1230|consen 186 --------W----KRQLILFGGFHDSNR-----DYIY---YNDVYAFDLD--TYKWSKLEPSGAGPTPRSGCQFSVTPQG 243 (521)
T ss_pred --------e----eeeEEEEcceecCCC-----ceEE---eeeeEEEecc--ceeeeeccCCCCCCCCCCcceEEecCCC
Confidence 2 789999999753210 0122 5788999987 4789874 3 4899999999999999
Q ss_pred eEEEEcCCCCCCC------C--Ccccc--Cc------CCcEEeccC---CCCCCcceeEEEEcCCCcEEEecCCCCcccc
Q 048017 369 DVIIINGASNGTA------G--WEDAE--EP------DRRFVVLNP---SKIPRMYHSSAVVLPDGRILVGGSNPHRRYN 429 (566)
Q Consensus 369 ~V~vvGG~~~g~~------~--~~~~y--dP------t~~Wt~~~~---~~~~R~yhs~a~LlpdG~V~v~GG~~~~~~~ 429 (566)
.|+|.||..+-.. | ..+.| +| .=+|+.+.+ -+.||...|+++. ++++-|..||-..-.
T Consensus 244 ~i~vyGGYsK~~~kK~~dKG~~hsDmf~L~p~~~~~dKw~W~kvkp~g~kPspRsgfsv~va-~n~kal~FGGV~D~e-- 320 (521)
T KOG1230|consen 244 GIVVYGGYSKQRVKKDVDKGTRHSDMFLLKPEDGREDKWVWTKVKPSGVKPSPRSGFSVAVA-KNHKALFFGGVCDLE-- 320 (521)
T ss_pred cEEEEcchhHhhhhhhhhcCceeeeeeeecCCcCCCcceeEeeccCCCCCCCCCCceeEEEe-cCCceEEecceeccc--
Confidence 9999999753210 1 11222 55 235777755 5789999987764 899999999952211
Q ss_pred cCCCCCCCcceEEEEeccccCC
Q 048017 430 FTAYPYPTDLSLEAFHPHYLDP 451 (566)
Q Consensus 430 ~~~~~~~~~~~vE~y~Ppyl~~ 451 (566)
.-...+.-|.|+--|+|.
T Consensus 321 ----eeeEsl~g~F~NDLy~fd 338 (521)
T KOG1230|consen 321 ----EEEESLSGEFFNDLYFFD 338 (521)
T ss_pred ----ccchhhhhhhhhhhhhee
Confidence 001233556677777653
No 27
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.00 E-value=3.5e-08 Score=100.34 Aligned_cols=244 Identities=20% Similarity=0.334 Sum_probs=143.8
Q ss_pred CCCCceEEccCCC-ccceeEEEEeeCCeEEEEeccCCCCCCCCCCCCccccCCCCCCCcccceEEEEECCCCcEEeCcCC
Q 048017 49 KSGGQWVLLQSSI-GISAMHMQVLNNDKVIIFDRTDMGPSNLSLPIDKCRKEGDVGQLDCTAHSVLYDIASNTFRPLLLQ 127 (566)
Q Consensus 49 ~~~g~W~~l~~~~-~~~a~h~~~l~~gkV~~~gg~~~~~s~~~~p~G~~~~~~~~~~~~~~~~~~~yDp~t~~w~~l~~~ 127 (566)
+....|+.++.=+ +.|-....++.+||+|++||.....+ ..+ + ....+..|||++|+|..+...
T Consensus 67 ~~~k~W~~~a~FpG~~rnqa~~a~~~~kLyvFgG~Gk~~~--~~~--------~-----~~nd~Y~y~p~~nsW~kl~t~ 131 (381)
T COG3055 67 KPGKGWTKIADFPGGARNQAVAAVIGGKLYVFGGYGKSVS--SSP--------Q-----VFNDAYRYDPSTNSWHKLDTR 131 (381)
T ss_pred cCCCCceEcccCCCcccccchheeeCCeEEEeeccccCCC--CCc--------e-----EeeeeEEecCCCChhheeccc
Confidence 3457899987522 33445555667999999999863222 111 0 235688999999999998764
Q ss_pred Ccc-cccCCeecCCC-cEEEEcCCCC------------------------------------CCCeEEEEcCCCCCCCcc
Q 048017 128 TDT-WCSSGAVLSDG-TLVQTGGYNV------------------------------------GDRVIRLFTPCNDEGCDW 169 (566)
Q Consensus 128 ~~~-~c~~~~~l~dG-~l~vvGG~~~------------------------------------g~~~v~~ydP~~~~t~~W 169 (566)
..+ .-.+.++..++ +|+++||.+. -.+.+..|||+ ++.|
T Consensus 132 sP~gl~G~~~~~~~~~~i~f~GGvn~~if~~yf~dv~~a~~d~~~~~~i~~~yf~~~~~dy~~n~ev~sy~p~---~n~W 208 (381)
T COG3055 132 SPTGLVGASTFSLNGTKIYFFGGVNQNIFNGYFEDVGAAGKDKEAVDKIIAHYFDKKAEDYFFNKEVLSYDPS---TNQW 208 (381)
T ss_pred cccccccceeEecCCceEEEEccccHHhhhhhHHhhhhhcccHHHHHHHHHHHhCCCHHHhcccccccccccc---cchh
Confidence 333 33333444455 9999999520 02467789999 8999
Q ss_pred cccCcccc-cccCcceEEEecCCcEEEEcCccCCeEEEEeCCCCCCCeeeeccccccCCCCCCCCccceEEEecCCcEEE
Q 048017 170 VELSKNLW-DRRWYASNQILPDNRIIVVGGRRVFTYEFYPKIDSLSSSLYLRFLIETRDPGEENNLYPFLHLLPDGNLFI 248 (566)
Q Consensus 170 ~~~~~~M~-~~R~y~s~~~L~dG~VyvvGG~~~~s~E~yP~~~~~~~w~~~p~l~~~~d~~~~~~~yp~~~~l~~G~Ifv 248 (566)
+.+.. .+ .++.. ++++..++++.+|-| |++|-..+ .|. .
T Consensus 209 ~~~G~-~pf~~~aG-sa~~~~~n~~~lInG------EiKpGLRt--~~~---------------------k--------- 248 (381)
T COG3055 209 RNLGE-NPFYGNAG-SAVVIKGNKLTLING------EIKPGLRT--AEV---------------------K--------- 248 (381)
T ss_pred hhcCc-CcccCccC-cceeecCCeEEEEcc------eecCCccc--cce---------------------e---------
Confidence 98764 33 45554 455555777888877 34443210 010 0
Q ss_pred EEcCeeEEEeccCCeEEEeecccCCCCCCccCCCCceeeecccccCCCCCCCCCCCCCCEEEEEcCCCC-C---cccccc
Q 048017 249 FANRRSILFDYINNKLVKEFPVIPGNDKRNYPSTGSSILLPVKLSAGSDGNGTAALPDAEVMVCGGAPA-G---AFIKSD 324 (566)
Q Consensus 249 ~Gg~~~e~yDp~t~~W~~~~p~lp~~~~r~~~~~g~avllpl~~~~~~~~~~y~~~~~gkI~v~GG~~~-~---~~~~~~ 324 (566)
.-.|.-..-+|. .++.+|....-. . -|.+=-+ ..+. ++++++.||..- + +|.+.-
T Consensus 249 -----~~~~~~~~~~w~-~l~~lp~~~~~~-~-eGvAGaf----------~G~s---~~~~lv~GGAnF~Ga~~~y~~Gk 307 (381)
T COG3055 249 -----QADFGGDNLKWL-KLSDLPAPIGSN-K-EGVAGAF----------SGKS---NGEVLVAGGANFPGALKAYKNGK 307 (381)
T ss_pred -----EEEeccCceeee-eccCCCCCCCCC-c-cccceec----------ccee---CCeEEEecCCCChhHHHHHHhcc
Confidence 001223345676 466555431111 0 1211100 1233 789999999752 1 111110
Q ss_pred cccccc-cc-----CCeeEEEEeeCCCCCeEEe-ccCCCcccceeEEccCCeEEEEcCCCCC
Q 048017 325 KESVYV-EA-----SRTCGRLKVTDKYPVWSME-FMPMPRVMSDMLLLPSGDVIIINGASNG 379 (566)
Q Consensus 325 ~~~~~~-pa-----~~s~~~~d~~~~~~~W~~~-~M~~~R~~~~~vvLpdG~V~vvGG~~~g 379 (566)
.+. +. .+.++.+| ++.|+.. .||.++.++.++.. +++||++||...+
T Consensus 308 ---~~AH~Gl~K~w~~~Vy~~d----~g~Wk~~GeLp~~l~YG~s~~~-nn~vl~IGGE~~~ 361 (381)
T COG3055 308 ---FYAHEGLSKSWNSEVYIFD----NGSWKIVGELPQGLAYGVSLSY-NNKVLLIGGETSG 361 (381)
T ss_pred ---cccccchhhhhhceEEEEc----CCceeeecccCCCccceEEEec-CCcEEEEccccCC
Confidence 000 00 12355555 5899998 99999999887655 8899999998754
No 28
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=98.98 E-value=2.2e-08 Score=105.02 Aligned_cols=272 Identities=17% Similarity=0.225 Sum_probs=160.1
Q ss_pred CCCCceEEccC----CCccceeEEEEeeCCeEEEEeccCCCCCCCCCCCCccccCCCCCCCcccceEEEEECCCCcEEeC
Q 048017 49 KSGGQWVLLQS----SIGISAMHMQVLNNDKVIIFDRTDMGPSNLSLPIDKCRKEGDVGQLDCTAHSVLYDIASNTFRPL 124 (566)
Q Consensus 49 ~~~g~W~~l~~----~~~~~a~h~~~l~~gkV~~~gg~~~~~s~~~~p~G~~~~~~~~~~~~~~~~~~~yDp~t~~w~~l 124 (566)
+..-+|..+.. .+..|-.|-++....-+++|||-+.|- + ....+|+.++++|..-
T Consensus 14 ~~~~rWrrV~~~tGPvPrpRHGHRAVaikELiviFGGGNEGi---------------i------DELHvYNTatnqWf~P 72 (830)
T KOG4152|consen 14 KNVVRWRRVQQSTGPVPRPRHGHRAVAIKELIVIFGGGNEGI---------------I------DELHVYNTATNQWFAP 72 (830)
T ss_pred hcccceEEEecccCCCCCccccchheeeeeeEEEecCCcccc---------------h------hhhhhhccccceeecc
Confidence 44568998864 234455688887888899999843211 1 2356899999999865
Q ss_pred cCC--CcccccCCeecCCC-cEEEEcCCCC-CCCeEEEEcCCCCCCCcccccCc------ccccccCcceEEEecCCcEE
Q 048017 125 LLQ--TDTWCSSGAVLSDG-TLVQTGGYNV-GDRVIRLFTPCNDEGCDWVELSK------NLWDRRWYASNQILPDNRII 194 (566)
Q Consensus 125 ~~~--~~~~c~~~~~l~dG-~l~vvGG~~~-g~~~v~~ydP~~~~t~~W~~~~~------~M~~~R~y~s~~~L~dG~Vy 194 (566)
..- ...-|++..++.|| +||++||+.+ |.-+-+.|..+.. .=.|.++.+ ..+-+|-.|+-... .+|-|
T Consensus 73 avrGDiPpgcAA~GfvcdGtrilvFGGMvEYGkYsNdLYELQas-RWeWkrlkp~~p~nG~pPCPRlGHSFsl~-gnKcY 150 (830)
T KOG4152|consen 73 AVRGDIPPGCAAFGFVCDGTRILVFGGMVEYGKYSNDLYELQAS-RWEWKRLKPKTPKNGPPPCPRLGHSFSLV-GNKCY 150 (830)
T ss_pred hhcCCCCCchhhcceEecCceEEEEccEeeeccccchHHHhhhh-hhhHhhcCCCCCCCCCCCCCccCceeEEe-ccEeE
Confidence 432 34568877777776 6999999864 3223345665510 223555532 25678999987766 79999
Q ss_pred EEcCccCC------eE-----EEE-----eCCCCCCCeeeeccccccCCCCCCCCccceEEEec---C---CcEEEEEcC
Q 048017 195 VVGGRRVF------TY-----EFY-----PKIDSLSSSLYLRFLIETRDPGEENNLYPFLHLLP---D---GNLFIFANR 252 (566)
Q Consensus 195 vvGG~~~~------s~-----E~y-----P~~~~~~~w~~~p~l~~~~d~~~~~~~yp~~~~l~---~---G~Ifv~Gg~ 252 (566)
++||..+. .+ .+| |-.. --.|.. |.-... .+...-.+..+.. | .|++++||.
T Consensus 151 lFGGLaNdseDpknNvPrYLnDlY~leL~~Gsg-vv~W~i-p~t~Gv----~P~pRESHTAViY~eKDs~~skmvvyGGM 224 (830)
T KOG4152|consen 151 LFGGLANDSEDPKNNVPRYLNDLYILELRPGSG-VVAWDI-PITYGV----LPPPRESHTAVIYTEKDSKKSKMVVYGGM 224 (830)
T ss_pred EeccccccccCcccccchhhcceEEEEeccCCc-eEEEec-ccccCC----CCCCcccceeEEEEeccCCcceEEEEccc
Confidence 99996421 11 122 1110 001321 100000 0001111222222 3 479999994
Q ss_pred ------eeEEEeccCCeEEEeecccCCC--CCCccCCCCceeeecccccCCCCCCCCCCCCCCEEEEEcCCCC---Cc--
Q 048017 253 ------RSILFDYINNKLVKEFPVIPGN--DKRNYPSTGSSILLPVKLSAGSDGNGTAALPDAEVMVCGGAPA---GA-- 319 (566)
Q Consensus 253 ------~~e~yDp~t~~W~~~~p~lp~~--~~r~~~~~g~avllpl~~~~~~~~~~y~~~~~gkI~v~GG~~~---~~-- 319 (566)
+.|..|..+-.|.+ |.+.+- .+|..+. ++++ ..|.||+||.-. .+
T Consensus 225 ~G~RLgDLW~Ldl~Tl~W~k--p~~~G~~PlPRSLHs--a~~I------------------GnKMyvfGGWVPl~~~~~~ 282 (830)
T KOG4152|consen 225 SGCRLGDLWTLDLDTLTWNK--PSLSGVAPLPRSLHS--ATTI------------------GNKMYVFGGWVPLVMDDVK 282 (830)
T ss_pred ccccccceeEEecceeeccc--ccccCCCCCCccccc--ceee------------------cceeEEecceeeeeccccc
Confidence 46888999999974 332211 1477532 2332 789999999631 01
Q ss_pred cccccccccccccCCeeEEEEeeCCCCCeEE------e--ccCCCcccceeEEccCCeEEEEcCCC
Q 048017 320 FIKSDKESVYVEASRTCGRLKVTDKYPVWSM------E--FMPMPRVMSDMLLLPSGDVIIINGAS 377 (566)
Q Consensus 320 ~~~~~~~~~~~pa~~s~~~~d~~~~~~~W~~------~--~M~~~R~~~~~vvLpdG~V~vvGG~~ 377 (566)
-...++++ .++++..++++. +..|+. + ..|.+|..|++|.+ +.++|+-.|.+
T Consensus 283 ~~~hekEW---kCTssl~clNld--t~~W~tl~~d~~ed~tiPR~RAGHCAvAi-gtRlYiWSGRD 342 (830)
T KOG4152|consen 283 VATHEKEW---KCTSSLACLNLD--TMAWETLLMDTLEDNTIPRARAGHCAVAI-GTRLYIWSGRD 342 (830)
T ss_pred ccccccee---eeccceeeeeec--chheeeeeeccccccccccccccceeEEe-ccEEEEEeccc
Confidence 00111111 134555667765 478974 2 36788999999887 88999999876
No 29
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=98.97 E-value=9.4e-09 Score=105.69 Aligned_cols=196 Identities=14% Similarity=0.194 Sum_probs=128.3
Q ss_pred CCceEEccC--C-CccceeEEEEeeCCeEEEEeccCCCCCCCCCCCCccccCCCCCCCcccceEEEEECCCCcEEeCcCC
Q 048017 51 GGQWVLLQS--S-IGISAMHMQVLNNDKVIIFDRTDMGPSNLSLPIDKCRKEGDVGQLDCTAHSVLYDIASNTFRPLLLQ 127 (566)
Q Consensus 51 ~g~W~~l~~--~-~~~~a~h~~~l~~gkV~~~gg~~~~~s~~~~p~G~~~~~~~~~~~~~~~~~~~yDp~t~~w~~l~~~ 127 (566)
.++|..+.. . ++.++.++++++.|.+|++||.-.. |++.... ++....+||.+|++|+.+...
T Consensus 107 ~~eWkk~~spn~P~pRsshq~va~~s~~l~~fGGEfaS------Pnq~qF~--------HYkD~W~fd~~trkweql~~~ 172 (521)
T KOG1230|consen 107 KNEWKKVVSPNAPPPRSSHQAVAVPSNILWLFGGEFAS------PNQEQFH--------HYKDLWLFDLKTRKWEQLEFG 172 (521)
T ss_pred ccceeEeccCCCcCCCccceeEEeccCeEEEeccccCC------cchhhhh--------hhhheeeeeeccchheeeccC
Confidence 478998863 2 2334455666677899999995322 3322111 345678999999999999754
Q ss_pred --CcccccCCeecCCCcEEEEcCCCCC------CCeEEEEcCCCCCCCcccccCcc--cccccCcceEEEecCCcEEEEc
Q 048017 128 --TDTWCSSGAVLSDGTLVQTGGYNVG------DRVIRLFTPCNDEGCDWVELSKN--LWDRRWYASNQILPDNRIIVVG 197 (566)
Q Consensus 128 --~~~~c~~~~~l~dG~l~vvGG~~~g------~~~v~~ydP~~~~t~~W~~~~~~--M~~~R~y~s~~~L~dG~VyvvG 197 (566)
+..+...-+++.-.+|+++||+.+. .+.+++||.. +-+|+++.+. -+.+|..+...+.++|.|||.|
T Consensus 173 g~PS~RSGHRMvawK~~lilFGGFhd~nr~y~YyNDvy~FdLd---tykW~Klepsga~PtpRSGcq~~vtpqg~i~vyG 249 (521)
T KOG1230|consen 173 GGPSPRSGHRMVAWKRQLILFGGFHDSNRDYIYYNDVYAFDLD---TYKWSKLEPSGAGPTPRSGCQFSVTPQGGIVVYG 249 (521)
T ss_pred CCCCCCccceeEEeeeeEEEEcceecCCCceEEeeeeEEEecc---ceeeeeccCCCCCCCCCCcceEEecCCCcEEEEc
Confidence 3455555567778899999998643 3688999998 8999988652 3688999988888999999999
Q ss_pred CccC----C-------eEEEE---eCCCCCCCeeeeccccccCCCCCCCCccceEEEecCCcEEEEEcC-----------
Q 048017 198 GRRV----F-------TYEFY---PKIDSLSSSLYLRFLIETRDPGEENNLYPFLHLLPDGNLFIFANR----------- 252 (566)
Q Consensus 198 G~~~----~-------s~E~y---P~~~~~~~w~~~p~l~~~~d~~~~~~~yp~~~~l~~G~Ifv~Gg~----------- 252 (566)
|... + ....| |..+..+.|.-.++-..-..+ .+..-| .+.+.++++-+.|||-
T Consensus 250 GYsK~~~kK~~dKG~~hsDmf~L~p~~~~~dKw~W~kvkp~g~kP-spRsgf-sv~va~n~kal~FGGV~D~eeeeEsl~ 327 (521)
T KOG1230|consen 250 GYSKQRVKKDVDKGTRHSDMFLLKPEDGREDKWVWTKVKPSGVKP-SPRSGF-SVAVAKNHKALFFGGVCDLEEEEESLS 327 (521)
T ss_pred chhHhhhhhhhhcCceeeeeeeecCCcCCCcceeEeeccCCCCCC-CCCCce-eEEEecCCceEEecceecccccchhhh
Confidence 9641 1 11233 555323355422221000000 001112 3456679999999992
Q ss_pred -----eeEEEeccCCeEE
Q 048017 253 -----RSILFDYINNKLV 265 (566)
Q Consensus 253 -----~~e~yDp~t~~W~ 265 (566)
+...||...|+|.
T Consensus 328 g~F~NDLy~fdlt~nrW~ 345 (521)
T KOG1230|consen 328 GEFFNDLYFFDLTRNRWS 345 (521)
T ss_pred hhhhhhhhheecccchhh
Confidence 2346899999997
No 30
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=98.94 E-value=2.1e-08 Score=105.17 Aligned_cols=267 Identities=15% Similarity=0.194 Sum_probs=156.6
Q ss_pred CCCcEEeCcC----CCcccccCCeecCCCcEEEEcCCCCC-CCeEEEEcCCCCCCCcccccC--cccccccCcceEEEec
Q 048017 117 ASNTFRPLLL----QTDTWCSSGAVLSDGTLVQTGGYNVG-DRVIRLFTPCNDEGCDWVELS--KNLWDRRWYASNQILP 189 (566)
Q Consensus 117 ~t~~w~~l~~----~~~~~c~~~~~l~dG~l~vvGG~~~g-~~~v~~ydP~~~~t~~W~~~~--~~M~~~R~y~s~~~L~ 189 (566)
.--+|+.+.. .+..+...-++.....|+|+||-++| ......|+-. +++|..-+ .+.+.+-..++.+.+
T Consensus 15 ~~~rWrrV~~~tGPvPrpRHGHRAVaikELiviFGGGNEGiiDELHvYNTa---tnqWf~PavrGDiPpgcAA~Gfvcd- 90 (830)
T KOG4152|consen 15 NVVRWRRVQQSTGPVPRPRHGHRAVAIKELIVIFGGGNEGIIDELHVYNTA---TNQWFAPAVRGDIPPGCAAFGFVCD- 90 (830)
T ss_pred cccceEEEecccCCCCCccccchheeeeeeEEEecCCcccchhhhhhhccc---cceeecchhcCCCCCchhhcceEec-
Confidence 3446777643 22334444455667889999997766 4678889998 89997532 134555545555555
Q ss_pred CCcEEEEcCccC---CeEEEE-eCCCCCCCeeee-ccccccCCCCCCCCccceEEEecCCcEEEEEcCeeEEEeccCC--
Q 048017 190 DNRIIVVGGRRV---FTYEFY-PKIDSLSSSLYL-RFLIETRDPGEENNLYPFLHLLPDGNLFIFANRRSILFDYINN-- 262 (566)
Q Consensus 190 dG~VyvvGG~~~---~s~E~y-P~~~~~~~w~~~-p~l~~~~d~~~~~~~yp~~~~l~~G~Ifv~Gg~~~e~yDp~t~-- 262 (566)
..|||++||.-+ .+-|.| -+..++ .|..+ |-... +.. .++..--+.+.+...|-|+|||-.-+.=||++|
T Consensus 91 GtrilvFGGMvEYGkYsNdLYELQasRW-eWkrlkp~~p~-nG~-pPCPRlGHSFsl~gnKcYlFGGLaNdseDpknNvP 167 (830)
T KOG4152|consen 91 GTRILVFGGMVEYGKYSNDLYELQASRW-EWKRLKPKTPK-NGP-PPCPRLGHSFSLVGNKCYLFGGLANDSEDPKNNVP 167 (830)
T ss_pred CceEEEEccEeeeccccchHHHhhhhhh-hHhhcCCCCCC-CCC-CCCCccCceeEEeccEeEEeccccccccCcccccc
Confidence 569999999753 233444 221111 23322 21111 111 122233356788899999999943333344433
Q ss_pred ------------------eEEEeec--ccCCCCCCccCCCCceeeecccccCCCCCCCCCCCCCCEEEEEcCCCCCcccc
Q 048017 263 ------------------KLVKEFP--VIPGNDKRNYPSTGSSILLPVKLSAGSDGNGTAALPDAEVMVCGGAPAGAFIK 322 (566)
Q Consensus 263 ------------------~W~~~~p--~lp~~~~r~~~~~g~avllpl~~~~~~~~~~y~~~~~gkI~v~GG~~~~~~~~ 322 (566)
.|..... .+| .+|.. ..+|++.-. ++- ..|++|.||..+ .
T Consensus 168 rYLnDlY~leL~~Gsgvv~W~ip~t~Gv~P--~pRES---HTAViY~eK-------Ds~----~skmvvyGGM~G-~--- 227 (830)
T KOG4152|consen 168 RYLNDLYILELRPGSGVVAWDIPITYGVLP--PPRES---HTAVIYTEK-------DSK----KSKMVVYGGMSG-C--- 227 (830)
T ss_pred hhhcceEEEEeccCCceEEEecccccCCCC--CCccc---ceeEEEEec-------cCC----cceEEEEccccc-c---
Confidence 2431111 122 24553 346665321 111 579999999863 2
Q ss_pred ccccccccccCCeeEEEEeeCCCCCeEEe----ccCCCcccceeEEccCCeEEEEcCCCC--C----CC----CCc----
Q 048017 323 SDKESVYVEASRTCGRLKVTDKYPVWSME----FMPMPRVMSDMLLLPSGDVIIINGASN--G----TA----GWE---- 384 (566)
Q Consensus 323 ~~~~~~~~pa~~s~~~~d~~~~~~~W~~~----~M~~~R~~~~~vvLpdG~V~vvGG~~~--g----~~----~~~---- 384 (566)
.+.+...+|++ +-.|... --|.||+.|.++++ .+|+||+||.-- + .+ .|.
T Consensus 228 ---------RLgDLW~Ldl~--Tl~W~kp~~~G~~PlPRSLHsa~~I-GnKMyvfGGWVPl~~~~~~~~~hekEWkCTss 295 (830)
T KOG4152|consen 228 ---------RLGDLWTLDLD--TLTWNKPSLSGVAPLPRSLHSATTI-GNKMYVFGGWVPLVMDDVKVATHEKEWKCTSS 295 (830)
T ss_pred ---------cccceeEEecc--eeecccccccCCCCCCcccccceee-cceeEEecceeeeeccccccccccceeeeccc
Confidence 25667778876 4788763 35788999998766 899999999521 0 01 011
Q ss_pred -cccCc-CCcEEecc-----C--CCCCCcceeEEEEcCCCcEEEecCCC
Q 048017 385 -DAEEP-DRRFVVLN-----P--SKIPRMYHSSAVVLPDGRILVGGSNP 424 (566)
Q Consensus 385 -~~ydP-t~~Wt~~~-----~--~~~~R~yhs~a~LlpdG~V~v~GG~~ 424 (566)
.|.|- +.+|+.+- . .+.+|..|+++.+ +-|+|+=-|.+
T Consensus 296 l~clNldt~~W~tl~~d~~ed~tiPR~RAGHCAvAi--gtRlYiWSGRD 342 (830)
T KOG4152|consen 296 LACLNLDTMAWETLLMDTLEDNTIPRARAGHCAVAI--GTRLYIWSGRD 342 (830)
T ss_pred eeeeeecchheeeeeeccccccccccccccceeEEe--ccEEEEEeccc
Confidence 13455 88898632 2 4567888976666 88999877754
No 31
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.91 E-value=1.4e-07 Score=95.94 Aligned_cols=255 Identities=15% Similarity=0.175 Sum_probs=155.0
Q ss_pred eCcCCCcccccCCeecCCCcEEEEcCCCCCCCeEEEEcCCCCCCCcccccCcccccccCcceEEEecCCcEEEEcCccC-
Q 048017 123 PLLLQTDTWCSSGAVLSDGTLVQTGGYNVGDRVIRLFTPCNDEGCDWVELSKNLWDRRWYASNQILPDNRIIVVGGRRV- 201 (566)
Q Consensus 123 ~l~~~~~~~c~~~~~l~dG~l~vvGG~~~g~~~v~~ydP~~~~t~~W~~~~~~M~~~R~y~s~~~L~dG~VyvvGG~~~- 201 (566)
.+|.++..+-++...+.+..+||.=|.. ..+-...|.... ...|++.+.-.-.+|-.+.++++ +|++||.||...
T Consensus 29 ~lPdlPvg~KnG~Ga~ig~~~YVGLGs~--G~afy~ldL~~~-~k~W~~~a~FpG~~rnqa~~a~~-~~kLyvFgG~Gk~ 104 (381)
T COG3055 29 QLPDLPVGFKNGAGALIGDTVYVGLGSA--GTAFYVLDLKKP-GKGWTKIADFPGGARNQAVAAVI-GGKLYVFGGYGKS 104 (381)
T ss_pred cCCCCCccccccccceecceEEEEeccC--CccceehhhhcC-CCCceEcccCCCcccccchheee-CCeEEEeeccccC
Confidence 4455555565665556566777754532 123334454421 46899998723356877777777 899999999642
Q ss_pred ----C----eEEEE-eCCCCCCCeeeeccccccCCCCCCCCccceEEEecCCcEEEEEcC--------------------
Q 048017 202 ----F----TYEFY-PKIDSLSSSLYLRFLIETRDPGEENNLYPFLHLLPDGNLFIFANR-------------------- 252 (566)
Q Consensus 202 ----~----s~E~y-P~~~~~~~w~~~p~l~~~~d~~~~~~~yp~~~~l~~G~Ifv~Gg~-------------------- 252 (566)
. ++-+| |.++ +|..++-...+. ..-..++.+-+.+|+++||.
T Consensus 105 ~~~~~~~~nd~Y~y~p~~n---sW~kl~t~sP~g------l~G~~~~~~~~~~i~f~GGvn~~if~~yf~dv~~a~~d~~ 175 (381)
T COG3055 105 VSSSPQVFNDAYRYDPSTN---SWHKLDTRSPTG------LVGASTFSLNGTKIYFFGGVNQNIFNGYFEDVGAAGKDKE 175 (381)
T ss_pred CCCCceEeeeeEEecCCCC---hhheeccccccc------cccceeEecCCceEEEEccccHHhhhhhHHhhhhhcccHH
Confidence 1 23456 8876 786554332221 11122333334499999991
Q ss_pred ---------------------eeEEEeccCCeEEEeecccCCCCCCccCCCCceeeecccccCCCCCCCCCCCCCCEEEE
Q 048017 253 ---------------------RSILFDYINNKLVKEFPVIPGNDKRNYPSTGSSILLPVKLSAGSDGNGTAALPDAEVMV 311 (566)
Q Consensus 253 ---------------------~~e~yDp~t~~W~~~~p~lp~~~~r~~~~~g~avllpl~~~~~~~~~~y~~~~~gkI~v 311 (566)
.+..|||+++.|. .+-..| .++.+|++++.- ++++.+
T Consensus 176 ~~~~i~~~yf~~~~~dy~~n~ev~sy~p~~n~W~-~~G~~p-----f~~~aGsa~~~~----------------~n~~~l 233 (381)
T COG3055 176 AVDKIIAHYFDKKAEDYFFNKEVLSYDPSTNQWR-NLGENP-----FYGNAGSAVVIK----------------GNKLTL 233 (381)
T ss_pred HHHHHHHHHhCCCHHHhcccccccccccccchhh-hcCcCc-----ccCccCcceeec----------------CCeEEE
Confidence 1467999999997 443333 455567766521 567877
Q ss_pred EcCCCCCccccccccccccccCCe--eEEEEeeCCCCCeEEe-ccCCCcccc------eeEEccCCeEEEEcCCCCCCC-
Q 048017 312 CGGAPAGAFIKSDKESVYVEASRT--CGRLKVTDKYPVWSME-FMPMPRVMS------DMLLLPSGDVIIINGASNGTA- 381 (566)
Q Consensus 312 ~GG~~~~~~~~~~~~~~~~pa~~s--~~~~d~~~~~~~W~~~-~M~~~R~~~------~~vvLpdG~V~vvGG~~~g~~- 381 (566)
+-|.-. |-+++ +.+++....+-+|... +++.+-... +.--..+|.++|.||+..-.+
T Consensus 234 InGEiK-------------pGLRt~~~k~~~~~~~~~~w~~l~~lp~~~~~~~eGvAGaf~G~s~~~~lv~GGAnF~Ga~ 300 (381)
T COG3055 234 INGEIK-------------PGLRTAEVKQADFGGDNLKWLKLSDLPAPIGSNKEGVAGAFSGKSNGEVLVAGGANFPGAL 300 (381)
T ss_pred Ecceec-------------CCccccceeEEEeccCceeeeeccCCCCCCCCCccccceeccceeCCeEEEecCCCChhHH
Confidence 777531 23444 4457776556789986 666443221 111124789999999864211
Q ss_pred ------------CCccccCc------CCcEEeccCCCCCCcceeEEEEcCCCcEEEecCCCCcc
Q 048017 382 ------------GWEDAEEP------DRRFVVLNPSKIPRMYHSSAVVLPDGRILVGGSNPHRR 427 (566)
Q Consensus 382 ------------~~~~~ydP------t~~Wt~~~~~~~~R~yhs~a~LlpdG~V~v~GG~~~~~ 427 (566)
+....|+- ++.|+.+..++.++.|- +.++-++.||++||...++
T Consensus 301 ~~y~~Gk~~AH~Gl~K~w~~~Vy~~d~g~Wk~~GeLp~~l~YG--~s~~~nn~vl~IGGE~~~G 362 (381)
T COG3055 301 KAYKNGKFYAHEGLSKSWNSEVYIFDNGSWKIVGELPQGLAYG--VSLSYNNKVLLIGGETSGG 362 (381)
T ss_pred HHHHhcccccccchhhhhhceEEEEcCCceeeecccCCCccce--EEEecCCcEEEEccccCCC
Confidence 01112222 89999999999999886 3344688999999986654
No 32
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=98.73 E-value=2.2e-07 Score=92.23 Aligned_cols=129 Identities=21% Similarity=0.404 Sum_probs=82.0
Q ss_pred eEEEeccCCeEEEeecccCCCCCCccCCCCceeeecccccCCCCCCCCCCCCCCEEEEEcCCCCCccccccccccccccC
Q 048017 254 SILFDYINNKLVKEFPVIPGNDKRNYPSTGSSILLPVKLSAGSDGNGTAALPDAEVMVCGGAPAGAFIKSDKESVYVEAS 333 (566)
Q Consensus 254 ~e~yDp~t~~W~~~~p~lp~~~~r~~~~~g~avllpl~~~~~~~~~~y~~~~~gkI~v~GG~~~~~~~~~~~~~~~~pa~ 333 (566)
+.+||+.++++. .+. +.. -.+ +++.++|+ +|++++.||...+.
T Consensus 48 s~~yD~~tn~~r-pl~-v~t---d~F--CSgg~~L~----------------dG~ll~tGG~~~G~-------------- 90 (243)
T PF07250_consen 48 SVEYDPNTNTFR-PLT-VQT---DTF--CSGGAFLP----------------DGRLLQTGGDNDGN-------------- 90 (243)
T ss_pred EEEEecCCCcEE-ecc-CCC---CCc--ccCcCCCC----------------CCCEEEeCCCCccc--------------
Confidence 567999999986 453 121 122 23344443 89999999975332
Q ss_pred CeeEEEEeeC--CCCCeEEe--ccCCCcccceeEEccCCeEEEEcCCCCCCCCCccccCc------CCcEEeccCC--CC
Q 048017 334 RTCGRLKVTD--KYPVWSME--FMPMPRVMSDMLLLPSGDVIIINGASNGTAGWEDAEEP------DRRFVVLNPS--KI 401 (566)
Q Consensus 334 ~s~~~~d~~~--~~~~W~~~--~M~~~R~~~~~vvLpdG~V~vvGG~~~g~~~~~~~ydP------t~~Wt~~~~~--~~ 401 (566)
+.+..|++.. ....|... .|..+|.+..++.|+||+|+|+||.... .+ |.+.+ .-.|..+... ..
T Consensus 91 ~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L~DG~vlIvGG~~~~--t~-E~~P~~~~~~~~~~~~~l~~~~~~~ 167 (243)
T PF07250_consen 91 KAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTLPDGRVLIVGGSNNP--TY-EFWPPKGPGPGPVTLPFLSQTSDTL 167 (243)
T ss_pred cceEEEecCCCCCCCCceECcccccCCCccccceECCCCCEEEEeCcCCC--cc-cccCCccCCCCceeeecchhhhccC
Confidence 2334455532 23579875 6999999999999999999999998722 11 22222 1223223221 22
Q ss_pred C-CcceeEEEEcCCCcEEEecCC
Q 048017 402 P-RMYHSSAVVLPDGRILVGGSN 423 (566)
Q Consensus 402 ~-R~yhs~a~LlpdG~V~v~GG~ 423 (566)
+ -.|. -..|||||+||+.+..
T Consensus 168 ~~nlYP-~~~llPdG~lFi~an~ 189 (243)
T PF07250_consen 168 PNNLYP-FVHLLPDGNLFIFANR 189 (243)
T ss_pred ccccCc-eEEEcCCCCEEEEEcC
Confidence 3 3354 4667899999999885
No 33
>PF13964 Kelch_6: Kelch motif
Probab=98.40 E-value=4.6e-07 Score=67.53 Aligned_cols=47 Identities=21% Similarity=0.384 Sum_probs=37.8
Q ss_pred CcccceeEEccCCeEEEEcCCCCCCCC--CccccCc-CCcEEeccCCCCCC
Q 048017 356 PRVMSDMLLLPSGDVIIINGASNGTAG--WEDAEEP-DRRFVVLNPSKIPR 403 (566)
Q Consensus 356 ~R~~~~~vvLpdG~V~vvGG~~~g~~~--~~~~ydP-t~~Wt~~~~~~~~R 403 (566)
+|..++++++ +++|||+||....... ..++||| +++|+.+++|+.+|
T Consensus 1 pR~~~s~v~~-~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~mp~pR 50 (50)
T PF13964_consen 1 PRYGHSAVVV-GGKIYVFGGYDNSGKYSNDVERYDPETNTWEQLPPMPTPR 50 (50)
T ss_pred CCccCEEEEE-CCEEEEECCCCCCCCccccEEEEcCCCCcEEECCCCCCCC
Confidence 6888888775 9999999998742111 2358999 99999999999998
No 34
>PF13964 Kelch_6: Kelch motif
Probab=98.35 E-value=5.3e-07 Score=67.18 Aligned_cols=46 Identities=22% Similarity=0.380 Sum_probs=40.1
Q ss_pred cccCCeecCCCcEEEEcCCCC---CCCeEEEEcCCCCCCCcccccCccccccc
Q 048017 131 WCSSGAVLSDGTLVQTGGYNV---GDRVIRLFTPCNDEGCDWVELSKNLWDRR 180 (566)
Q Consensus 131 ~c~~~~~l~dG~l~vvGG~~~---g~~~v~~ydP~~~~t~~W~~~~~~M~~~R 180 (566)
+|+.+++..+++||++||..+ ..+.+++|||. +++|+.+++ |+.+|
T Consensus 2 R~~~s~v~~~~~iyv~GG~~~~~~~~~~v~~yd~~---t~~W~~~~~-mp~pR 50 (50)
T PF13964_consen 2 RYGHSAVVVGGKIYVFGGYDNSGKYSNDVERYDPE---TNTWEQLPP-MPTPR 50 (50)
T ss_pred CccCEEEEECCEEEEECCCCCCCCccccEEEEcCC---CCcEEECCC-CCCCC
Confidence 566777888999999999864 35889999999 999999998 99988
No 35
>smart00612 Kelch Kelch domain.
Probab=98.10 E-value=4.9e-06 Score=60.29 Aligned_cols=45 Identities=13% Similarity=0.335 Sum_probs=38.6
Q ss_pred cEEEEcCCCC--CCCeEEEEcCCCCCCCcccccCcccccccCcceEEEecCC
Q 048017 142 TLVQTGGYNV--GDRVIRLFTPCNDEGCDWVELSKNLWDRRWYASNQILPDN 191 (566)
Q Consensus 142 ~l~vvGG~~~--g~~~v~~ydP~~~~t~~W~~~~~~M~~~R~y~s~~~L~dG 191 (566)
+||++||... ..+++++|||. +++|++.++ |+.+|.+++++++ +|
T Consensus 1 ~iyv~GG~~~~~~~~~v~~yd~~---~~~W~~~~~-~~~~r~~~~~~~~-~g 47 (47)
T smart00612 1 KIYVVGGFDGGQRLKSVEVYDPE---TNKWTPLPS-MPTPRSGHGVAVI-NG 47 (47)
T ss_pred CEEEEeCCCCCceeeeEEEECCC---CCeEccCCC-CCCccccceEEEe-CC
Confidence 5899999853 35789999999 899999997 9999999998887 43
No 36
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=97.93 E-value=1.7e-05 Score=57.90 Aligned_cols=45 Identities=22% Similarity=0.256 Sum_probs=36.2
Q ss_pred ceeEEEEeeCCeEEEEeccCCCCCCCCCCCCccccCCCCCCCcccceEEEEECCCCcEEeCcCC
Q 048017 64 SAMHMQVLNNDKVIIFDRTDMGPSNLSLPIDKCRKEGDVGQLDCTAHSVLYDIASNTFRPLLLQ 127 (566)
Q Consensus 64 ~a~h~~~l~~gkV~~~gg~~~~~s~~~~p~G~~~~~~~~~~~~~~~~~~~yDp~t~~w~~l~~~ 127 (566)
+..|+++..+++||++||... ... ....+++||+.+++|+.++.|
T Consensus 2 R~~~~~~~~~~~iyv~GG~~~-~~~------------------~~~~v~~yd~~~~~W~~~~~m 46 (47)
T PF01344_consen 2 RSGHAAVVVGNKIYVIGGYDG-NNQ------------------PTNSVEVYDPETNTWEELPPM 46 (47)
T ss_dssp BBSEEEEEETTEEEEEEEBES-TSS------------------BEEEEEEEETTTTEEEEEEEE
T ss_pred CccCEEEEECCEEEEEeeecc-cCc------------------eeeeEEEEeCCCCEEEEcCCC
Confidence 467888889999999999863 110 246799999999999998765
No 37
>smart00612 Kelch Kelch domain.
Probab=97.90 E-value=1.3e-05 Score=58.03 Aligned_cols=43 Identities=21% Similarity=0.402 Sum_probs=34.1
Q ss_pred eEEEEcCCCCCCC-CCccccCc-CCcEEeccCCCCCCcceeEEEE
Q 048017 369 DVIIINGASNGTA-GWEDAEEP-DRRFVVLNPSKIPRMYHSSAVV 411 (566)
Q Consensus 369 ~V~vvGG~~~g~~-~~~~~ydP-t~~Wt~~~~~~~~R~yhs~a~L 411 (566)
+|||+||...... ...++||| +++|+.+++|+.+|.+|+++++
T Consensus 1 ~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~ 45 (47)
T smart00612 1 KIYVVGGFDGGQRLKSVEVYDPETNKWTPLPSMPTPRSGHGVAVI 45 (47)
T ss_pred CEEEEeCCCCCceeeeEEEECCCCCeEccCCCCCCccccceEEEe
Confidence 5899999763111 12357999 9999999999999999988776
No 38
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=97.73 E-value=1.3e-05 Score=58.59 Aligned_cols=43 Identities=21% Similarity=0.414 Sum_probs=35.9
Q ss_pred cccCCeecCCCcEEEEcCCCC---CCCeEEEEcCCCCCCCcccccCcccc
Q 048017 131 WCSSGAVLSDGTLVQTGGYNV---GDRVIRLFTPCNDEGCDWVELSKNLW 177 (566)
Q Consensus 131 ~c~~~~~l~dG~l~vvGG~~~---g~~~v~~ydP~~~~t~~W~~~~~~M~ 177 (566)
++..+++..+++||++||... ..+++++||+. +++|+++++ |+
T Consensus 2 R~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~---~~~W~~~~~-mp 47 (47)
T PF01344_consen 2 RSGHAAVVVGNKIYVIGGYDGNNQPTNSVEVYDPE---TNTWEELPP-MP 47 (47)
T ss_dssp BBSEEEEEETTEEEEEEEBESTSSBEEEEEEEETT---TTEEEEEEE-ES
T ss_pred CccCEEEEECCEEEEEeeecccCceeeeEEEEeCC---CCEEEEcCC-CC
Confidence 556677778999999999864 25789999999 999999987 75
No 39
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=97.70 E-value=0.0001 Score=54.52 Aligned_cols=47 Identities=15% Similarity=0.214 Sum_probs=35.3
Q ss_pred ceeEEEEeeCCeEEEEeccCCCCCCCCCCCCccccCCCCCCCcccceEEEEECCCCcEEeCcCC
Q 048017 64 SAMHMQVLNNDKVIIFDRTDMGPSNLSLPIDKCRKEGDVGQLDCTAHSVLYDIASNTFRPLLLQ 127 (566)
Q Consensus 64 ~a~h~~~l~~gkV~~~gg~~~~~s~~~~p~G~~~~~~~~~~~~~~~~~~~yDp~t~~w~~l~~~ 127 (566)
+..|+++++++|||++||.+.+.. .+ ....+++||+++++|+.++.+
T Consensus 2 r~~hs~~~~~~kiyv~GG~~~~~~-------~~----------~~~~v~~~d~~t~~W~~~~~~ 48 (49)
T PF07646_consen 2 RYGHSAVVLDGKIYVFGGYGTDNG-------GS----------SSNDVWVFDTETNQWTELSPM 48 (49)
T ss_pred ccceEEEEECCEEEEECCcccCCC-------Cc----------ccceeEEEECCCCEEeecCCC
Confidence 467999999999999999821110 00 134689999999999998765
No 40
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=97.55 E-value=0.00013 Score=53.98 Aligned_cols=44 Identities=18% Similarity=0.237 Sum_probs=37.7
Q ss_pred CCcEEEEcCCCC----CCCeEEEEcCCCCCCCcccccCcccccccCcceEEE
Q 048017 140 DGTLVQTGGYNV----GDRVIRLFTPCNDEGCDWVELSKNLWDRRWYASNQI 187 (566)
Q Consensus 140 dG~l~vvGG~~~----g~~~v~~ydP~~~~t~~W~~~~~~M~~~R~y~s~~~ 187 (566)
+++|||+||... ..+++..||+. +++|+++++ ++.+|..|++++
T Consensus 1 g~~~~vfGG~~~~~~~~~nd~~~~~~~---~~~W~~~~~-~P~~R~~h~~~~ 48 (49)
T PF13415_consen 1 GNKLYVFGGYDDDGGTRLNDVWVFDLD---TNTWTRIGD-LPPPRSGHTATV 48 (49)
T ss_pred CCEEEEECCcCCCCCCEecCEEEEECC---CCEEEECCC-CCCCccceEEEE
Confidence 578999999872 24789999999 899999977 999999998875
No 41
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=97.54 E-value=0.00011 Score=54.38 Aligned_cols=44 Identities=14% Similarity=0.222 Sum_probs=34.3
Q ss_pred CCeEEEEcCCCC-CCCCCc--cccCc-CCcEEeccCCCCCCcceeEEE
Q 048017 367 SGDVIIINGASN-GTAGWE--DAEEP-DRRFVVLNPSKIPRMYHSSAV 410 (566)
Q Consensus 367 dG~V~vvGG~~~-g~~~~~--~~ydP-t~~Wt~~~~~~~~R~yhs~a~ 410 (566)
+++|||+||... +..... .+||+ +++|+++++++.+|..|++++
T Consensus 1 g~~~~vfGG~~~~~~~~~nd~~~~~~~~~~W~~~~~~P~~R~~h~~~~ 48 (49)
T PF13415_consen 1 GNKLYVFGGYDDDGGTRLNDVWVFDLDTNTWTRIGDLPPPRSGHTATV 48 (49)
T ss_pred CCEEEEECCcCCCCCCEecCEEEEECCCCEEEECCCCCCCccceEEEE
Confidence 578999999873 111122 36899 999999999999999998764
No 42
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=97.47 E-value=5.6e-05 Score=55.82 Aligned_cols=45 Identities=9% Similarity=0.123 Sum_probs=26.9
Q ss_pred CcccceeEEccCCeEEEEcCCCCCCCCCc--cccCc-CCcEEeccCCC
Q 048017 356 PRVMSDMLLLPSGDVIIINGASNGTAGWE--DAEEP-DRRFVVLNPSK 400 (566)
Q Consensus 356 ~R~~~~~vvLpdG~V~vvGG~~~g~~~~~--~~ydP-t~~Wt~~~~~~ 400 (566)
||..|.++.+.+++||++||.+.....+. ..||+ +++|+++++||
T Consensus 1 pR~~h~~~~~~~~~i~v~GG~~~~~~~~~d~~~~d~~~~~W~~~~~~P 48 (49)
T PF13418_consen 1 PRYGHSAVSIGDNSIYVFGGRDSSGSPLNDLWIFDIETNTWTRLPSMP 48 (49)
T ss_dssp --BS-EEEEE-TTEEEEE--EEE-TEE---EEEEETTTTEEEE--SS-
T ss_pred CcceEEEEEEeCCeEEEECCCCCCCcccCCEEEEECCCCEEEECCCCC
Confidence 68999999888899999999874211122 47899 99999998876
No 43
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=97.28 E-value=0.00048 Score=50.76 Aligned_cols=38 Identities=21% Similarity=0.416 Sum_probs=24.2
Q ss_pred ccceEEEecCCcEEEEEcC--------eeEEEeccCCeEEEeecccC
Q 048017 234 LYPFLHLLPDGNLFIFANR--------RSILFDYINNKLVKEFPVIP 272 (566)
Q Consensus 234 ~yp~~~~l~~G~Ifv~Gg~--------~~e~yDp~t~~W~~~~p~lp 272 (566)
.++.++.+.+++||++||. +.++||+++++|+ .++++|
T Consensus 3 ~~h~~~~~~~~~i~v~GG~~~~~~~~~d~~~~d~~~~~W~-~~~~~P 48 (49)
T PF13418_consen 3 YGHSAVSIGDNSIYVFGGRDSSGSPLNDLWIFDIETNTWT-RLPSMP 48 (49)
T ss_dssp BS-EEEEE-TTEEEEE--EEE-TEE---EEEEETTTTEEE-E--SS-
T ss_pred ceEEEEEEeCCeEEEECCCCCCCcccCCEEEEECCCCEEE-ECCCCC
Confidence 3455555668999999994 5789999999998 577665
No 44
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=97.25 E-value=0.00037 Score=51.54 Aligned_cols=42 Identities=29% Similarity=0.511 Sum_probs=33.1
Q ss_pred cccCCeecCCCcEEEEcCC--CC---CCCeEEEEcCCCCCCCcccccCccc
Q 048017 131 WCSSGAVLSDGTLVQTGGY--NV---GDRVIRLFTPCNDEGCDWVELSKNL 176 (566)
Q Consensus 131 ~c~~~~~l~dG~l~vvGG~--~~---g~~~v~~ydP~~~~t~~W~~~~~~M 176 (566)
++..++++.+++||++||+ .. -.+.+++||+. +.+|++++. |
T Consensus 2 r~~hs~~~~~~kiyv~GG~~~~~~~~~~~~v~~~d~~---t~~W~~~~~-~ 48 (49)
T PF07646_consen 2 RYGHSAVVLDGKIYVFGGYGTDNGGSSSNDVWVFDTE---TNQWTELSP-M 48 (49)
T ss_pred ccceEEEEECCEEEEECCcccCCCCcccceeEEEECC---CCEEeecCC-C
Confidence 3445566779999999999 21 24789999999 999999876 5
No 45
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=96.52 E-value=1.5 Score=46.89 Aligned_cols=272 Identities=12% Similarity=0.128 Sum_probs=129.4
Q ss_pred CceEEccCCCccce---eEEEEeeCCeEEEEeccCCCCCCCCCCCCccccCCCCCCCcccceEEEEECCCCc--EEeCcC
Q 048017 52 GQWVLLQSSIGISA---MHMQVLNNDKVIIFDRTDMGPSNLSLPIDKCRKEGDVGQLDCTAHSVLYDIASNT--FRPLLL 126 (566)
Q Consensus 52 g~W~~l~~~~~~~a---~h~~~l~~gkV~~~gg~~~~~s~~~~p~G~~~~~~~~~~~~~~~~~~~yDp~t~~--w~~l~~ 126 (566)
-.|+.-.. .+... ....++.+|+||+.+... .+.++|.++++ |+.-..
T Consensus 46 ~~W~~~~g-~g~~~~~~~~sPvv~~~~vy~~~~~g--------------------------~l~ald~~tG~~~W~~~~~ 98 (394)
T PRK11138 46 TVWSTSVG-DGVGDYYSRLHPAVAYNKVYAADRAG--------------------------LVKALDADTGKEIWSVDLS 98 (394)
T ss_pred eeeEEEcC-CCCccceeeeccEEECCEEEEECCCC--------------------------eEEEEECCCCcEeeEEcCC
Confidence 56886543 23321 123355799999876421 35677877665 664221
Q ss_pred C-C-------cccccCCeecCCCcEEEEcCCCCCCCeEEEEcCCCCCCCcccccCcccccccCcceEEEecCCcEEEEcC
Q 048017 127 Q-T-------DTWCSSGAVLSDGTLVQTGGYNVGDRVIRLFTPCNDEGCDWVELSKNLWDRRWYASNQILPDNRIIVVGG 198 (566)
Q Consensus 127 ~-~-------~~~c~~~~~l~dG~l~vvGG~~~g~~~v~~ydP~~~~t~~W~~~~~~M~~~R~y~s~~~L~dG~VyvvGG 198 (566)
. . .....++.+..+++||+.+. ...+..+|+.+. .-.|+.-. ...- +. ..++.+++||+..+
T Consensus 99 ~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~----~g~l~ald~~tG-~~~W~~~~---~~~~-~s-sP~v~~~~v~v~~~ 168 (394)
T PRK11138 99 EKDGWFSKNKSALLSGGVTVAGGKVYIGSE----KGQVYALNAEDG-EVAWQTKV---AGEA-LS-RPVVSDGLVLVHTS 168 (394)
T ss_pred CcccccccccccccccccEEECCEEEEEcC----CCEEEEEECCCC-CCcccccC---CCce-ec-CCEEECCEEEEECC
Confidence 1 0 11223445556778876543 246888998732 45687532 2111 22 22344888887544
Q ss_pred ccCCeEEEE-eCCCCCCCeeee---ccccccCCCCCCCCccceEEEecCCcEEEEEcC-eeEEEeccCCe--EEEeeccc
Q 048017 199 RRVFTYEFY-PKIDSLSSSLYL---RFLIETRDPGEENNLYPFLHLLPDGNLFIFANR-RSILFDYINNK--LVKEFPVI 271 (566)
Q Consensus 199 ~~~~s~E~y-P~~~~~~~w~~~---p~l~~~~d~~~~~~~yp~~~~l~~G~Ifv~Gg~-~~e~yDp~t~~--W~~~~p~l 271 (566)
.. .+..+ +++. ...|... |.+..+ ...-| ++.+|.+|+..+. ....+|+++++ |...+. .
T Consensus 169 ~g--~l~ald~~tG-~~~W~~~~~~~~~~~~------~~~sP---~v~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~-~ 235 (394)
T PRK11138 169 NG--MLQALNESDG-AVKWTVNLDVPSLTLR------GESAP---ATAFGGAIVGGDNGRVSAVLMEQGQLIWQQRIS-Q 235 (394)
T ss_pred CC--EEEEEEccCC-CEeeeecCCCCccccc------CCCCC---EEECCEEEEEcCCCEEEEEEccCChhhheeccc-c
Confidence 22 23333 4432 1235321 111000 00112 2336677765443 35567888764 653221 1
Q ss_pred CCCCC---CccCCCCceeeecccccCCCCCCCCCCCCCCEEEEEcCCCCCccccccccccccccCCeeEEEEeeCCCCCe
Q 048017 272 PGNDK---RNYPSTGSSILLPVKLSAGSDGNGTAALPDAEVMVCGGAPAGAFIKSDKESVYVEASRTCGRLKVTDKYPVW 348 (566)
Q Consensus 272 p~~~~---r~~~~~g~avllpl~~~~~~~~~~y~~~~~gkI~v~GG~~~~~~~~~~~~~~~~pa~~s~~~~d~~~~~~~W 348 (566)
|.... |......+-++ .++.||+++. + .....+|+...+..|
T Consensus 236 ~~~~~~~~~~~~~~~sP~v-----------------~~~~vy~~~~-~-----------------g~l~ald~~tG~~~W 280 (394)
T PRK11138 236 PTGATEIDRLVDVDTTPVV-----------------VGGVVYALAY-N-----------------GNLVALDLRSGQIVW 280 (394)
T ss_pred CCCccchhcccccCCCcEE-----------------ECCEEEEEEc-C-----------------CeEEEEECCCCCEEE
Confidence 11000 10000011111 1678887542 1 234567776545678
Q ss_pred EEeccCCCcccceeEEccCCeEEEEcCCCCCCCCCccccCc---CCcEEeccCCCCCCcceeEEEEcCCCcEEEecC
Q 048017 349 SMEFMPMPRVMSDMLLLPSGDVIIINGASNGTAGWEDAEEP---DRRFVVLNPSKIPRMYHSSAVVLPDGRILVGGS 422 (566)
Q Consensus 349 ~~~~M~~~R~~~~~vvLpdG~V~vvGG~~~g~~~~~~~ydP---t~~Wt~~~~~~~~R~yhs~a~LlpdG~V~v~GG 422 (566)
+.. ....+ . .++.+|+||+..... ...+.|+ ...|+.-.. ..+..-+.++ .+|+||+...
T Consensus 281 ~~~-~~~~~---~-~~~~~~~vy~~~~~g-----~l~ald~~tG~~~W~~~~~--~~~~~~sp~v--~~g~l~v~~~ 343 (394)
T PRK11138 281 KRE-YGSVN---D-FAVDGGRIYLVDQND-----RVYALDTRGGVELWSQSDL--LHRLLTAPVL--YNGYLVVGDS 343 (394)
T ss_pred eec-CCCcc---C-cEEECCEEEEEcCCC-----eEEEEECCCCcEEEccccc--CCCcccCCEE--ECCEEEEEeC
Confidence 764 11111 2 234588999876422 2446677 456864211 1233233333 4899987644
No 46
>PLN02772 guanylate kinase
Probab=96.52 E-value=0.0062 Score=64.59 Aligned_cols=68 Identities=16% Similarity=0.128 Sum_probs=53.4
Q ss_pred ccccCCeecCCCcEEEEcCCCCC---CCeEEEEcCCCCCCCcccccC--cccccccCcceEEEecCCcEEEEcCcc
Q 048017 130 TWCSSGAVLSDGTLVQTGGYNVG---DRVIRLFTPCNDEGCDWVELS--KNLWDRRWYASNQILPDNRIIVVGGRR 200 (566)
Q Consensus 130 ~~c~~~~~l~dG~l~vvGG~~~g---~~~v~~ydP~~~~t~~W~~~~--~~M~~~R~y~s~~~L~dG~VyvvGG~~ 200 (566)
..|...++..++++|++||..+. ...+++||+. +.+|.... ..-+.+|-.|+++++.|+||+|+++-.
T Consensus 24 ~~~~~tav~igdk~yv~GG~~d~~~~~~~v~i~D~~---t~~W~~P~V~G~~P~~r~GhSa~v~~~~rilv~~~~~ 96 (398)
T PLN02772 24 PKNRETSVTIGDKTYVIGGNHEGNTLSIGVQILDKI---TNNWVSPIVLGTGPKPCKGYSAVVLNKDRILVIKKGS 96 (398)
T ss_pred CCCcceeEEECCEEEEEcccCCCccccceEEEEECC---CCcEecccccCCCCCCCCcceEEEECCceEEEEeCCC
Confidence 33444566668999999997753 3579999999 99998654 125778999999999999999998754
No 47
>PLN02772 guanylate kinase
Probab=96.47 E-value=0.0057 Score=64.89 Aligned_cols=66 Identities=24% Similarity=0.270 Sum_probs=50.5
Q ss_pred CcccceeEEccCCeEEEEcCCCCCC--CCCccccCc-CCcEEe---ccCCCCCCcceeEEEEcCCCcEEEecCC
Q 048017 356 PRVMSDMLLLPSGDVIIINGASNGT--AGWEDAEEP-DRRFVV---LNPSKIPRMYHSSAVVLPDGRILVGGSN 423 (566)
Q Consensus 356 ~R~~~~~vvLpdG~V~vvGG~~~g~--~~~~~~ydP-t~~Wt~---~~~~~~~R~yhs~a~LlpdG~V~v~GG~ 423 (566)
+|..+.++++ ++++||+||.+... ..-..+||+ +.+|+. .+.-|.+|-.|| |+++.|+||||.+++
T Consensus 24 ~~~~~tav~i-gdk~yv~GG~~d~~~~~~~v~i~D~~t~~W~~P~V~G~~P~~r~GhS-a~v~~~~rilv~~~~ 95 (398)
T PLN02772 24 PKNRETSVTI-GDKTYVIGGNHEGNTLSIGVQILDKITNNWVSPIVLGTGPKPCKGYS-AVVLNKDRILVIKKG 95 (398)
T ss_pred CCCcceeEEE-CCEEEEEcccCCCccccceEEEEECCCCcEecccccCCCCCCCCcce-EEEECCceEEEEeCC
Confidence 6667777665 99999999976431 112358999 999985 467899999997 555689999999865
No 48
>PRK13684 Ycf48-like protein; Provisional
Probab=96.33 E-value=1.7 Score=45.57 Aligned_cols=74 Identities=16% Similarity=0.218 Sum_probs=42.4
Q ss_pred CCCeEEeccCCC---cccceeEEccCCeEEEEcCCCCCCCCCccccCcCCcEEeccC-CCCCCcceeEEEEcCCCcEEEe
Q 048017 345 YPVWSMEFMPMP---RVMSDMLLLPSGDVIIINGASNGTAGWEDAEEPDRRFVVLNP-SKIPRMYHSSAVVLPDGRILVG 420 (566)
Q Consensus 345 ~~~W~~~~M~~~---R~~~~~vvLpdG~V~vvGG~~~g~~~~~~~ydPt~~Wt~~~~-~~~~R~yhs~a~LlpdG~V~v~ 420 (566)
...|+...++.. ....+....++++++++|... . .....|-+.+|+.+.. ...+..+.. .+...++++|++
T Consensus 245 G~sW~~~~~~~~~~~~~l~~v~~~~~~~~~~~G~~G--~--v~~S~d~G~tW~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 319 (334)
T PRK13684 245 LESWSKPIIPEITNGYGYLDLAYRTPGEIWAGGGNG--T--LLVSKDGGKTWEKDPVGEEVPSNFYK-IVFLDPEKGFVL 319 (334)
T ss_pred CCccccccCCccccccceeeEEEcCCCCEEEEcCCC--e--EEEeCCCCCCCeECCcCCCCCcceEE-EEEeCCCceEEE
Confidence 468987544422 222344556788999887642 1 1111233789998753 334444543 344578888888
Q ss_pred cCC
Q 048017 421 GSN 423 (566)
Q Consensus 421 GG~ 423 (566)
|..
T Consensus 320 G~~ 322 (334)
T PRK13684 320 GQR 322 (334)
T ss_pred CCC
Confidence 764
No 49
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=96.14 E-value=1.8 Score=43.87 Aligned_cols=243 Identities=21% Similarity=0.264 Sum_probs=122.3
Q ss_pred EEEEECCC-CcEEeC--cCCCcccccCCeecCCCcEEEEcCCCCCCCeEEEEcCCCCCCCcccccCcccccccCcceEEE
Q 048017 111 SVLYDIAS-NTFRPL--LLQTDTWCSSGAVLSDGTLVQTGGYNVGDRVIRLFTPCNDEGCDWVELSKNLWDRRWYASNQI 187 (566)
Q Consensus 111 ~~~yDp~t-~~w~~l--~~~~~~~c~~~~~l~dG~l~vvGG~~~g~~~v~~ydP~~~~t~~W~~~~~~M~~~R~y~s~~~ 187 (566)
.-+||.-| |+-..+ +..--+-| +..|.|..++.||.+ +.+.+|+..+.+...=..+...+..-+.|-+++.
T Consensus 79 lIvWDs~TtnK~haipl~s~WVMtC---A~sPSg~~VAcGGLd---N~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~ 152 (343)
T KOG0286|consen 79 LIVWDSFTTNKVHAIPLPSSWVMTC---AYSPSGNFVACGGLD---NKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCR 152 (343)
T ss_pred EEEEEcccccceeEEecCceeEEEE---EECCCCCeEEecCcC---ceeEEEecccccccccceeeeeecCccceeEEEE
Confidence 45566543 343333 32233445 345899999999985 5677888762101111122222455677888887
Q ss_pred ec-CCcEEEEcCccCCeEEEEeCCCCCCCeeeeccccccCCCCCCCCccceEEEec-CCcEEEEEcC--eeEEEeccCCe
Q 048017 188 LP-DNRIIVVGGRRVFTYEFYPKIDSLSSSLYLRFLIETRDPGEENNLYPFLHLLP-DGNLFIFANR--RSILFDYINNK 263 (566)
Q Consensus 188 L~-dG~VyvvGG~~~~s~E~yP~~~~~~~w~~~p~l~~~~d~~~~~~~yp~~~~l~-~G~Ifv~Gg~--~~e~yDp~t~~ 263 (566)
.. |+.|+.-.| ..+.-.|.-.. .-....+.-.+.|. -...+.| +++.|+.|+. .+.++|.+...
T Consensus 153 f~dD~~ilT~SG--D~TCalWDie~---g~~~~~f~GH~gDV-------~slsl~p~~~ntFvSg~cD~~aklWD~R~~~ 220 (343)
T KOG0286|consen 153 FLDDNHILTGSG--DMTCALWDIET---GQQTQVFHGHTGDV-------MSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQ 220 (343)
T ss_pred EcCCCceEecCC--CceEEEEEccc---ceEEEEecCCcccE-------EEEecCCCCCCeEEecccccceeeeeccCcc
Confidence 55 455554334 23455551110 11112221111110 1223445 8999999985 46788888876
Q ss_pred EEEeecccCCCCCCccCCCCceeeecccccCCCCCCCCCCCCCCEEEEEcCCCCCccccccccccccccCCeeEEEEeeC
Q 048017 264 LVKEFPVIPGNDKRNYPSTGSSILLPVKLSAGSDGNGTAALPDAEVMVCGGAPAGAFIKSDKESVYVEASRTCGRLKVTD 343 (566)
Q Consensus 264 W~~~~p~lp~~~~r~~~~~g~avllpl~~~~~~~~~~y~~~~~gkI~v~GG~~~~~~~~~~~~~~~~pa~~s~~~~d~~~ 343 (566)
-.+.+ ++.+. . -.+...+| +|.-++.|-.+ .+|-.||++.
T Consensus 221 c~qtF---~ghes--D--INsv~ffP----------------~G~afatGSDD-----------------~tcRlyDlRa 260 (343)
T KOG0286|consen 221 CVQTF---EGHES--D--INSVRFFP----------------SGDAFATGSDD-----------------ATCRLYDLRA 260 (343)
T ss_pred eeEee---ccccc--c--cceEEEcc----------------CCCeeeecCCC-----------------ceeEEEeecC
Confidence 54433 43311 0 11222332 45555554322 3577788874
Q ss_pred CCCC---eEEeccCCCcccceeEEc-cCCeEEEEcCCCCCCCCCccccCc--CCcEEeccCCCCCCcceeEEEEcCCCcE
Q 048017 344 KYPV---WSMEFMPMPRVMSDMLLL-PSGDVIIINGASNGTAGWEDAEEP--DRRFVVLNPSKIPRMYHSSAVVLPDGRI 417 (566)
Q Consensus 344 ~~~~---W~~~~M~~~R~~~~~vvL-pdG~V~vvGG~~~g~~~~~~~ydP--t~~Wt~~~~~~~~R~yhs~a~LlpdG~V 417 (566)
..+ ++.+....+= .+|.+ ..|+++..|..+.. ..+||- .++-..+.- ..-| -|+.-+-|||.-
T Consensus 261 -D~~~a~ys~~~~~~gi---tSv~FS~SGRlLfagy~d~~----c~vWDtlk~e~vg~L~G-HeNR--vScl~~s~DG~a 329 (343)
T KOG0286|consen 261 -DQELAVYSHDSIICGI---TSVAFSKSGRLLFAGYDDFT----CNVWDTLKGERVGVLAG-HENR--VSCLGVSPDGMA 329 (343)
T ss_pred -CcEEeeeccCcccCCc---eeEEEcccccEEEeeecCCc----eeEeeccccceEEEeec-cCCe--eEEEEECCCCcE
Confidence 111 1212222222 22221 36999998865532 234555 333333331 1223 356667789998
Q ss_pred EEecC
Q 048017 418 LVGGS 422 (566)
Q Consensus 418 ~v~GG 422 (566)
+..|+
T Consensus 330 v~TgS 334 (343)
T KOG0286|consen 330 VATGS 334 (343)
T ss_pred EEecc
Confidence 88877
No 50
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=95.62 E-value=3.9 Score=43.69 Aligned_cols=240 Identities=11% Similarity=0.126 Sum_probs=114.8
Q ss_pred eEEEEECCCCc--EEeCcCCCcccccCCeecCCCcEEEEcCCCCCCCeEEEEcCCCCCCCcccccCcccc--cccCcceE
Q 048017 110 HSVLYDIASNT--FRPLLLQTDTWCSSGAVLSDGTLVQTGGYNVGDRVIRLFTPCNDEGCDWVELSKNLW--DRRWYASN 185 (566)
Q Consensus 110 ~~~~yDp~t~~--w~~l~~~~~~~c~~~~~l~dG~l~vvGG~~~g~~~v~~ydP~~~~t~~W~~~~~~M~--~~R~y~s~ 185 (566)
...++|.+|++ |+.-... .. .+..++.+++||+..+. ..+..||+.+. .-.|+.-.. .+ ..|...+.
T Consensus 131 ~l~ald~~tG~~~W~~~~~~-~~--~ssP~v~~~~v~v~~~~----g~l~ald~~tG-~~~W~~~~~-~~~~~~~~~~sP 201 (394)
T PRK11138 131 QVYALNAEDGEVAWQTKVAG-EA--LSRPVVSDGLVLVHTSN----GMLQALNESDG-AVKWTVNLD-VPSLTLRGESAP 201 (394)
T ss_pred EEEEEECCCCCCcccccCCC-ce--ecCCEEECCEEEEECCC----CEEEEEEccCC-CEeeeecCC-CCcccccCCCCC
Confidence 46788988875 7643221 11 12334457888875442 46889999832 345875322 11 11222333
Q ss_pred EEecCCcEEEEcCccCCeEEEE-eCCCCCCCeee-eccccccCCCC--CCCCccceEEEecCCcEEEEEc-CeeEEEecc
Q 048017 186 QILPDNRIIVVGGRRVFTYEFY-PKIDSLSSSLY-LRFLIETRDPG--EENNLYPFLHLLPDGNLFIFAN-RRSILFDYI 260 (566)
Q Consensus 186 ~~L~dG~VyvvGG~~~~s~E~y-P~~~~~~~w~~-~p~l~~~~d~~--~~~~~yp~~~~l~~G~Ifv~Gg-~~~e~yDp~ 260 (566)
++ .+|.+|+..+. +. +-.+ +.+. ...|.. ........... .....-| ++.+|.||+.+. ....++|++
T Consensus 202 ~v-~~~~v~~~~~~-g~-v~a~d~~~G-~~~W~~~~~~~~~~~~~~~~~~~~~sP---~v~~~~vy~~~~~g~l~ald~~ 274 (394)
T PRK11138 202 AT-AFGGAIVGGDN-GR-VSAVLMEQG-QLIWQQRISQPTGATEIDRLVDVDTTP---VVVGGVVYALAYNGNLVALDLR 274 (394)
T ss_pred EE-ECCEEEEEcCC-CE-EEEEEccCC-hhhheeccccCCCccchhcccccCCCc---EEECCEEEEEEcCCeEEEEECC
Confidence 33 36777775442 21 1122 3332 123432 10000000000 0000112 245888888664 356788998
Q ss_pred CCe--EEEeecccCCCCCCccCCCCceeeecccccCCCCCCCCCCCCCCEEEEEcCCCCCccccccccccccccCCeeEE
Q 048017 261 NNK--LVKEFPVIPGNDKRNYPSTGSSILLPVKLSAGSDGNGTAALPDAEVMVCGGAPAGAFIKSDKESVYVEASRTCGR 338 (566)
Q Consensus 261 t~~--W~~~~p~lp~~~~r~~~~~g~avllpl~~~~~~~~~~y~~~~~gkI~v~GG~~~~~~~~~~~~~~~~pa~~s~~~ 338 (566)
+++ |.+.. .. . ...++. +++||+.... ..+..
T Consensus 275 tG~~~W~~~~---~~-----~--~~~~~~------------------~~~vy~~~~~------------------g~l~a 308 (394)
T PRK11138 275 SGQIVWKREY---GS-----V--NDFAVD------------------GGRIYLVDQN------------------DRVYA 308 (394)
T ss_pred CCCEEEeecC---CC-----c--cCcEEE------------------CCEEEEEcCC------------------CeEEE
Confidence 875 54311 10 0 011111 6888886432 23556
Q ss_pred EEeeCCCCCeEEeccCCCcccceeEEccCCeEEEEcCCCCCCCCCccccCc-C--CcEEeccCCCCCCcceeEEEEcCCC
Q 048017 339 LKVTDKYPVWSMEFMPMPRVMSDMLLLPSGDVIIINGASNGTAGWEDAEEP-D--RRFVVLNPSKIPRMYHSSAVVLPDG 415 (566)
Q Consensus 339 ~d~~~~~~~W~~~~M~~~R~~~~~vvLpdG~V~vvGG~~~g~~~~~~~ydP-t--~~Wt~~~~~~~~R~yhs~a~LlpdG 415 (566)
+|+......|+...+. .+.....++ .+|+||+.... | ...+.|+ + -.|+.- ......+.+-++ .||
T Consensus 309 ld~~tG~~~W~~~~~~-~~~~~sp~v-~~g~l~v~~~~--G---~l~~ld~~tG~~~~~~~--~~~~~~~s~P~~--~~~ 377 (394)
T PRK11138 309 LDTRGGVELWSQSDLL-HRLLTAPVL-YNGYLVVGDSE--G---YLHWINREDGRFVAQQK--VDSSGFLSEPVV--ADD 377 (394)
T ss_pred EECCCCcEEEcccccC-CCcccCCEE-ECCEEEEEeCC--C---EEEEEECCCCCEEEEEE--cCCCcceeCCEE--ECC
Confidence 7766545678754332 233333333 48999875331 2 3456777 3 345531 111123333344 389
Q ss_pred cEEEecC
Q 048017 416 RILVGGS 422 (566)
Q Consensus 416 ~V~v~GG 422 (566)
+|||..-
T Consensus 378 ~l~v~t~ 384 (394)
T PRK11138 378 KLLIQAR 384 (394)
T ss_pred EEEEEeC
Confidence 9988743
No 51
>PF13088 BNR_2: BNR repeat-like domain; PDB: 2F11_A 2F0Z_A 1VCU_B 2F25_B 1SO7_A 2F29_A 1SNT_A 2F13_A 2F28_A 2F27_A ....
Probab=94.44 E-value=3.3 Score=41.55 Aligned_cols=78 Identities=18% Similarity=0.285 Sum_probs=48.0
Q ss_pred eCCCCCeEEe---ccCCCcccceeEEccCCeEEEEcCCCCCCCCCccccCc--CCcEEeccCCCCCC---cceeEEEEcC
Q 048017 342 TDKYPVWSME---FMPMPRVMSDMLLLPSGDVIIINGASNGTAGWEDAEEP--DRRFVVLNPSKIPR---MYHSSAVVLP 413 (566)
Q Consensus 342 ~~~~~~W~~~---~M~~~R~~~~~vvLpdG~V~vvGG~~~g~~~~~~~ydP--t~~Wt~~~~~~~~R---~yhs~a~Llp 413 (566)
.+...+|+.. .++.+......+.+.+|+++++.....+.......+.. +.+|+......... ...+..+.++
T Consensus 190 ~D~G~TWs~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~r~~l~l~~S~D~g~tW~~~~~i~~~~~~~~~Y~~~~~~~ 269 (275)
T PF13088_consen 190 TDGGRTWSPPQPTNLPNPNSSISLVRLSDGRLLLVYNNPDGRSNLSLYVSEDGGKTWSRPKTIDDGPNGDSGYPSLTQLP 269 (275)
T ss_dssp SSTTSS-EEEEEEECSSCCEEEEEEECTTSEEEEEEECSSTSEEEEEEEECTTCEEEEEEEEEEEEE-CCEEEEEEEEEE
T ss_pred CCCCCcCCCceecccCcccCCceEEEcCCCCEEEEEECCCCCCceEEEEEeCCCCcCCccEEEeCCCCCcEECCeeEEeC
Confidence 3446789852 67887777777888999999988742221111112222 88998654433322 4445667779
Q ss_pred CCcEEE
Q 048017 414 DGRILV 419 (566)
Q Consensus 414 dG~V~v 419 (566)
||+|+|
T Consensus 270 dg~l~i 275 (275)
T PF13088_consen 270 DGKLYI 275 (275)
T ss_dssp TTEEEE
T ss_pred CCcCCC
Confidence 999986
No 52
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=94.14 E-value=7.4 Score=39.46 Aligned_cols=224 Identities=21% Similarity=0.188 Sum_probs=122.6
Q ss_pred EEEEECCCCcEEeCcCCCcccccCCeecCCCcEEEEcCCCCCCCeEEEEcCCCCCCCcccccCcccccccCcc---eEEE
Q 048017 111 SVLYDIASNTFRPLLLQTDTWCSSGAVLSDGTLVQTGGYNVGDRVIRLFTPCNDEGCDWVELSKNLWDRRWYA---SNQI 187 (566)
Q Consensus 111 ~~~yDp~t~~w~~l~~~~~~~c~~~~~l~dG~l~vvGG~~~g~~~v~~ydP~~~~t~~W~~~~~~M~~~R~y~---s~~~ 187 (566)
....||+|++....+...-..=++.++=+||...++-+ ...|..+||+ +..-++.+ ++..+.+. +++.
T Consensus 85 iGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~----~~aI~R~dpk---t~evt~f~--lp~~~a~~nlet~vf 155 (353)
T COG4257 85 IGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDT----GLAIGRLDPK---TLEVTRFP--LPLEHADANLETAVF 155 (353)
T ss_pred ceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecC----cceeEEecCc---ccceEEee--cccccCCCcccceee
Confidence 45679999998887765443334555667887777632 3478899998 44444332 33333332 2333
Q ss_pred ecCCcEEEEcCccC--------CeEEEEeCCCCCCCeeeeccccccCCCCCCCCccceEEEecCCcEEEE--EcCeeEEE
Q 048017 188 LPDNRIIVVGGRRV--------FTYEFYPKIDSLSSSLYLRFLIETRDPGEENNLYPFLHLLPDGNLFIF--ANRRSILF 257 (566)
Q Consensus 188 L~dG~VyvvGG~~~--------~s~E~yP~~~~~~~w~~~p~l~~~~d~~~~~~~yp~~~~l~~G~Ifv~--Gg~~~e~y 257 (566)
=.+|.+.-.|-..- ..+++||.- .. ..-| ..++.+||.+|+. .|+...+.
T Consensus 156 D~~G~lWFt~q~G~yGrLdPa~~~i~vfpaP------------qG-------~gpy-Gi~atpdGsvwyaslagnaiari 215 (353)
T COG4257 156 DPWGNLWFTGQIGAYGRLDPARNVISVFPAP------------QG-------GGPY-GICATPDGSVWYASLAGNAIARI 215 (353)
T ss_pred CCCccEEEeeccccceecCcccCceeeeccC------------CC-------CCCc-ceEECCCCcEEEEeccccceEEc
Confidence 34688887774321 123444221 00 1112 3567899999987 67777788
Q ss_pred eccCCeEEEeecccCCC---CCCccCCCCceeeecccccCCCCCCCCCCCCCCEEEEEcCCCCCccccccccccccccCC
Q 048017 258 DYINNKLVKEFPVIPGN---DKRNYPSTGSSILLPVKLSAGSDGNGTAALPDAEVMVCGGAPAGAFIKSDKESVYVEASR 334 (566)
Q Consensus 258 Dp~t~~W~~~~p~lp~~---~~r~~~~~g~avllpl~~~~~~~~~~y~~~~~gkI~v~GG~~~~~~~~~~~~~~~~pa~~ 334 (566)
||.+..=+ .+| .|.. ..|.. .+. .-|++.+. .. ...
T Consensus 216 dp~~~~ae-v~p-~P~~~~~gsRri---wsd-------------------pig~~wit---tw--------------g~g 254 (353)
T COG4257 216 DPFAGHAE-VVP-QPNALKAGSRRI---WSD-------------------PIGRAWIT---TW--------------GTG 254 (353)
T ss_pred ccccCCcc-eec-CCCccccccccc---ccC-------------------ccCcEEEe---cc--------------CCc
Confidence 98887533 343 2322 01211 000 04666664 10 124
Q ss_pred eeEEEEeeCCCCCeEEeccC--CCcccceeEEccCCeEEEEcCCCCCCCCCccccCc-CCcEEeccCCCCCCcceeEEEE
Q 048017 335 TCGRLKVTDKYPVWSMEFMP--MPRVMSDMLLLPSGDVIIINGASNGTAGWEDAEEP-DRRFVVLNPSKIPRMYHSSAVV 411 (566)
Q Consensus 335 s~~~~d~~~~~~~W~~~~M~--~~R~~~~~vvLpdG~V~vvGG~~~g~~~~~~~ydP-t~~Wt~~~~~~~~R~yhs~a~L 411 (566)
++.+|||.. ..|..-+|| .+|-+.-- |=-.|+|+..- +. ++....+|| +.+|+.+ +++|-..+...|
T Consensus 255 ~l~rfdPs~--~sW~eypLPgs~arpys~r-VD~~grVW~se-a~---agai~rfdpeta~ftv~---p~pr~n~gn~ql 324 (353)
T COG4257 255 SLHRFDPSV--TSWIEYPLPGSKARPYSMR-VDRHGRVWLSE-AD---AGAIGRFDPETARFTVL---PIPRPNSGNIQL 324 (353)
T ss_pred eeeEeCccc--ccceeeeCCCCCCCcceee-eccCCcEEeec-cc---cCceeecCcccceEEEe---cCCCCCCCceec
Confidence 578899874 569886665 45544322 22246777632 11 123457999 9999875 345543333333
Q ss_pred cCCCc
Q 048017 412 LPDGR 416 (566)
Q Consensus 412 lpdG~ 416 (566)
|||
T Consensus 325 --~gr 327 (353)
T COG4257 325 --DGR 327 (353)
T ss_pred --cCC
Confidence 555
No 53
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=94.14 E-value=6.5 Score=42.38 Aligned_cols=244 Identities=17% Similarity=0.184 Sum_probs=117.9
Q ss_pred ceEEEEECCCCcEEe-CcCCCcccccCCeecCCCcEEEEcCCCCCCCeEEEEcCCCCCCCcccccCcccccccCcceEEE
Q 048017 109 AHSVLYDIASNTFRP-LLLQTDTWCSSGAVLSDGTLVQTGGYNVGDRVIRLFTPCNDEGCDWVELSKNLWDRRWYASNQI 187 (566)
Q Consensus 109 ~~~~~yDp~t~~w~~-l~~~~~~~c~~~~~l~dG~l~vvGG~~~g~~~v~~ydP~~~~t~~W~~~~~~M~~~R~y~s~~~ 187 (566)
..+.+|+..+..-.. .....+.-|+ ..+-.||+|+++|+.. -.|.+||-. +. ..+-. |. +.-.+.-.+
T Consensus 48 ~rvqly~~~~~~~~k~~srFk~~v~s-~~fR~DG~LlaaGD~s---G~V~vfD~k---~r--~iLR~-~~-ah~apv~~~ 116 (487)
T KOG0310|consen 48 VRVQLYSSVTRSVRKTFSRFKDVVYS-VDFRSDGRLLAAGDES---GHVKVFDMK---SR--VILRQ-LY-AHQAPVHVT 116 (487)
T ss_pred cEEEEEecchhhhhhhHHhhccceeE-EEeecCCeEEEccCCc---CcEEEeccc---cH--HHHHH-Hh-hccCceeEE
Confidence 567888887755433 2222232232 3444699999999853 468899944 21 11111 11 011111111
Q ss_pred ---ecCCcEEEEcCccCCeEEEEeCCCCCCCeeeeccccccCCCCCCCCccceEE--EecCCcEEEEEcCe--eEEEecc
Q 048017 188 ---LPDNRIIVVGGRRVFTYEFYPKIDSLSSSLYLRFLIETRDPGEENNLYPFLH--LLPDGNLFIFANRR--SILFDYI 260 (566)
Q Consensus 188 ---L~dG~VyvvGG~~~~s~E~yP~~~~~~~w~~~p~l~~~~d~~~~~~~yp~~~--~l~~G~Ifv~Gg~~--~e~yDp~ 260 (566)
-.|+.+++.|+-+ ....+|-... ...... +....| |-++. .-.+++|++.||.+ +-+||.+
T Consensus 117 ~f~~~d~t~l~s~sDd-~v~k~~d~s~---a~v~~~-l~~htD-------YVR~g~~~~~~~hivvtGsYDg~vrl~DtR 184 (487)
T KOG0310|consen 117 KFSPQDNTMLVSGSDD-KVVKYWDLST---AYVQAE-LSGHTD-------YVRCGDISPANDHIVVTGSYDGKVRLWDTR 184 (487)
T ss_pred EecccCCeEEEecCCC-ceEEEEEcCC---cEEEEE-ecCCcc-------eeEeeccccCCCeEEEecCCCceEEEEEec
Confidence 1378888887754 3333332111 111111 111111 33322 22378899999975 5679988
Q ss_pred CC-eEEEeecccCCCCCCccCCCCceeeecccccCCCCCCCCCCCCCCEEEEEcCCCCCccccccccccccccCCeeEEE
Q 048017 261 NN-KLVKEFPVIPGNDKRNYPSTGSSILLPVKLSAGSDGNGTAALPDAEVMVCGGAPAGAFIKSDKESVYVEASRTCGRL 339 (566)
Q Consensus 261 t~-~W~~~~p~lp~~~~r~~~~~g~avllpl~~~~~~~~~~y~~~~~gkI~v~GG~~~~~~~~~~~~~~~~pa~~s~~~~ 339 (566)
.. .|...+ ..+ .| ...+++|.+ ...|..+||. ++-.+
T Consensus 185 ~~~~~v~el---nhg----~p---Ve~vl~lps-------------gs~iasAgGn-------------------~vkVW 222 (487)
T KOG0310|consen 185 SLTSRVVEL---NHG----CP---VESVLALPS-------------GSLIASAGGN-------------------SVKVW 222 (487)
T ss_pred cCCceeEEe---cCC----Cc---eeeEEEcCC-------------CCEEEEcCCC-------------------eEEEE
Confidence 76 565333 211 11 223344321 3556666663 24445
Q ss_pred EeeCCCCCeEEeccC-CCcccceeEEccCCeEEEEcCCCCCCCCCccccCcCCcEEeccCCCCCCcceeEEEEcCCCcEE
Q 048017 340 KVTDKYPVWSMEFMP-MPRVMSDMLLLPSGDVIIINGASNGTAGWEDAEEPDRRFVVLNPSKIPRMYHSSAVVLPDGRIL 418 (566)
Q Consensus 340 d~~~~~~~W~~~~M~-~~R~~~~~vvLpdG~V~vvGG~~~g~~~~~~~ydPt~~Wt~~~~~~~~R~yhs~a~LlpdG~V~ 418 (566)
|+... . -....|. +-..--+....-|++=++.||-+ + ...+|| +..|+.+-.+..+----|.++ -||++.+
T Consensus 223 Dl~~G-~-qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD-~---~VKVfd-~t~~Kvv~s~~~~~pvLsiav-s~dd~t~ 294 (487)
T KOG0310|consen 223 DLTTG-G-QLLTSMFNHNKTVTCLRLASDSTRLLSGSLD-R---HVKVFD-TTNYKVVHSWKYPGPVLSIAV-SPDDQTV 294 (487)
T ss_pred EecCC-c-eehhhhhcccceEEEEEeecCCceEeecccc-c---ceEEEE-ccceEEEEeeecccceeeEEe-cCCCceE
Confidence 55421 1 0001221 11110111122245556666655 2 345676 556666666555544446554 5899999
Q ss_pred EecCCCC
Q 048017 419 VGGSNPH 425 (566)
Q Consensus 419 v~GG~~~ 425 (566)
|+|...+
T Consensus 295 viGmsnG 301 (487)
T KOG0310|consen 295 VIGMSNG 301 (487)
T ss_pred EEecccc
Confidence 9987543
No 54
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=93.38 E-value=1.6 Score=45.14 Aligned_cols=160 Identities=16% Similarity=0.195 Sum_probs=78.6
Q ss_pred CceEEccCCCccceeE-EEEeeCCeEEEEeccCCCCCCCCCCCCccccCCCCCCCcccceEEEEECCCCcEEeCcCCCcc
Q 048017 52 GQWVLLQSSIGISAMH-MQVLNNDKVIIFDRTDMGPSNLSLPIDKCRKEGDVGQLDCTAHSVLYDIASNTFRPLLLQTDT 130 (566)
Q Consensus 52 g~W~~l~~~~~~~a~h-~~~l~~gkV~~~gg~~~~~s~~~~p~G~~~~~~~~~~~~~~~~~~~yDp~t~~w~~l~~~~~~ 130 (566)
.+|+.+... ...++- .....+|++++++-.. .....+||-...|++......+
T Consensus 134 ~tW~~~~~~-~~gs~~~~~r~~dG~~vavs~~G-------------------------~~~~s~~~G~~~w~~~~r~~~~ 187 (302)
T PF14870_consen 134 KTWQAVVSE-TSGSINDITRSSDGRYVAVSSRG-------------------------NFYSSWDPGQTTWQPHNRNSSR 187 (302)
T ss_dssp SSEEEEE-S-----EEEEEE-TTS-EEEEETTS-------------------------SEEEEE-TT-SS-EEEE--SSS
T ss_pred CCeeEcccC-CcceeEeEEECCCCcEEEEECcc-------------------------cEEEEecCCCccceEEccCccc
Confidence 689987643 333343 3445799988887532 1245678888899998876666
Q ss_pred cccCCeecCCCcEEEEcCCCCCCCeEEEEc-CCCCCCCcccccCcccccccC-cceEEEecCCcEEEEcCccCCeEEEE-
Q 048017 131 WCSSGAVLSDGTLVQTGGYNVGDRVIRLFT-PCNDEGCDWVELSKNLWDRRW-YASNQILPDNRIIVVGGRRVFTYEFY- 207 (566)
Q Consensus 131 ~c~~~~~l~dG~l~vvGG~~~g~~~v~~yd-P~~~~t~~W~~~~~~M~~~R~-y~s~~~L~dG~VyvvGG~~~~s~E~y- 207 (566)
+-....+-+|+.|+++. .. -.+++=+ +.. ..+|.+...+.....+ +..++.-.++.++++||... +|
T Consensus 188 riq~~gf~~~~~lw~~~-~G---g~~~~s~~~~~--~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~G~----l~~ 257 (302)
T PF14870_consen 188 RIQSMGFSPDGNLWMLA-RG---GQIQFSDDPDD--GETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGSGT----LLV 257 (302)
T ss_dssp -EEEEEE-TTS-EEEEE-TT---TEEEEEE-TTE--EEEE---B-TTSS--S-EEEEEESSSS-EEEEESTT-----EEE
T ss_pred eehhceecCCCCEEEEe-CC---cEEEEccCCCC--ccccccccCCcccCceeeEEEEecCCCCEEEEeCCcc----EEE
Confidence 66666677888887764 11 1222222 221 5678873221223333 35667777899999999753 33
Q ss_pred eCCCCCCCeeeeccccccCCCCCCCCccceEEEecCCcEEEEEcCee
Q 048017 208 PKIDSLSSSLYLRFLIETRDPGEENNLYPFLHLLPDGNLFIFANRRS 254 (566)
Q Consensus 208 P~~~~~~~w~~~p~l~~~~d~~~~~~~yp~~~~l~~G~Ifv~Gg~~~ 254 (566)
... ...+|...+.... .+.++|-..+. .+.+-|++|.+.+
T Consensus 258 S~D-gGktW~~~~~~~~-----~~~n~~~i~f~-~~~~gf~lG~~G~ 297 (302)
T PF14870_consen 258 STD-GGKTWQKDRVGEN-----VPSNLYRIVFV-NPDKGFVLGQDGV 297 (302)
T ss_dssp ESS-TTSS-EE-GGGTT-----SSS---EEEEE-ETTEEEEE-STTE
T ss_pred eCC-CCccceECccccC-----CCCceEEEEEc-CCCceEEECCCcE
Confidence 222 2457876554332 23467755544 4578888887654
No 55
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=92.66 E-value=2.9 Score=41.06 Aligned_cols=143 Identities=13% Similarity=0.119 Sum_probs=81.7
Q ss_pred ceEEEEECCCCcEEeCcCCCc--ccccCCeecCCCcEEEEcCCCCCC--CeEEEEcCCCCCCCcccc-cCccccccc---
Q 048017 109 AHSVLYDIASNTFRPLLLQTD--TWCSSGAVLSDGTLVQTGGYNVGD--RVIRLFTPCNDEGCDWVE-LSKNLWDRR--- 180 (566)
Q Consensus 109 ~~~~~yDp~t~~w~~l~~~~~--~~c~~~~~l~dG~l~vvGG~~~g~--~~v~~ydP~~~~t~~W~~-~~~~M~~~R--- 180 (566)
..+++|+..+++|+.+..... ..... .++.+|.||-+.-...+. ..+-.||.. +.+|.+ ++ ++..+
T Consensus 70 ~~~~Vys~~~~~Wr~~~~~~~~~~~~~~-~v~~~G~lyw~~~~~~~~~~~~IvsFDl~---~E~f~~~i~--~P~~~~~~ 143 (230)
T TIGR01640 70 SEHQVYTLGSNSWRTIECSPPHHPLKSR-GVCINGVLYYLAYTLKTNPDYFIVSFDVS---SERFKEFIP--LPCGNSDS 143 (230)
T ss_pred ccEEEEEeCCCCccccccCCCCccccCC-eEEECCEEEEEEEECCCCCcEEEEEEEcc---cceEeeeee--cCcccccc
Confidence 357999999999999874321 11222 455688888776432211 268889999 888985 43 33322
Q ss_pred -CcceEEEecCCcEEEEcCccC-CeEEEE-eCCCCCCCeee---eccccccCCCCCCCCccceEEEecCCcEEEEEcC--
Q 048017 181 -WYASNQILPDNRIIVVGGRRV-FTYEFY-PKIDSLSSSLY---LRFLIETRDPGEENNLYPFLHLLPDGNLFIFANR-- 252 (566)
Q Consensus 181 -~y~s~~~L~dG~VyvvGG~~~-~s~E~y-P~~~~~~~w~~---~p~l~~~~d~~~~~~~yp~~~~l~~G~Ifv~Gg~-- 252 (566)
.+.....+ +|++.++..... ...|+| -+......|.. .++.... +. ....+ .....-+|+|++....
T Consensus 144 ~~~~~L~~~-~G~L~~v~~~~~~~~~~IWvl~d~~~~~W~k~~~i~~~~~~-~~--~~~~~-~~~~~~~g~I~~~~~~~~ 218 (230)
T TIGR01640 144 VDYLSLINY-KGKLAVLKQKKDTNNFDLWVLNDAGKQEWSKLFTVPIPPLP-DL--VDDNF-LSGFTDKGEIVLCCEDEN 218 (230)
T ss_pred ccceEEEEE-CCEEEEEEecCCCCcEEEEEECCCCCCceeEEEEEcCcchh-hh--hhhee-EeEEeeCCEEEEEeCCCC
Confidence 24456677 699988876432 347888 33211234742 2321000 00 00112 2345668998886653
Q ss_pred -e-eEEEeccCC
Q 048017 253 -R-SILFDYINN 262 (566)
Q Consensus 253 -~-~e~yDp~t~ 262 (566)
. ...||+++|
T Consensus 219 ~~~~~~y~~~~~ 230 (230)
T TIGR01640 219 PFYIFYYNVGEN 230 (230)
T ss_pred ceEEEEEeccCC
Confidence 2 667888765
No 56
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=92.56 E-value=15 Score=38.16 Aligned_cols=241 Identities=14% Similarity=0.157 Sum_probs=99.6
Q ss_pred CCCcEEeCcCCCcccccCCeecCCCcEEEEcCCCCCCCeEEEEcCCCCCCCcccccCcccccc-cCcceEEEecCCcEEE
Q 048017 117 ASNTFRPLLLQTDTWCSSGAVLSDGTLVQTGGYNVGDRVIRLFTPCNDEGCDWVELSKNLWDR-RWYASNQILPDNRIIV 195 (566)
Q Consensus 117 ~t~~w~~l~~~~~~~c~~~~~l~dG~l~vvGG~~~g~~~v~~ydP~~~~t~~W~~~~~~M~~~-R~y~s~~~L~dG~Vyv 195 (566)
+.+.|+.+....+.......++-+.+-+++|-.. . +|--. |...+|+........+ .....++...+.+.||
T Consensus 4 ~~~~W~~v~l~t~~~l~dV~F~d~~~G~~VG~~g----~--il~T~-DGG~tW~~~~~~~~~~~~~~l~~I~f~~~~g~i 76 (302)
T PF14870_consen 4 SGNSWQQVSLPTDKPLLDVAFVDPNHGWAVGAYG----T--ILKTT-DGGKTWQPVSLDLDNPFDYHLNSISFDGNEGWI 76 (302)
T ss_dssp SS--EEEEE-S-SS-EEEEEESSSS-EEEEETTT----E--EEEES-STTSS-EE-----S-----EEEEEEEETTEEEE
T ss_pred cCCCcEEeecCCCCceEEEEEecCCEEEEEecCC----E--EEEEC-CCCccccccccCCCccceeeEEEEEecCCceEE
Confidence 3567887776555444445555557788887542 1 23222 1257898875423332 2333344445788998
Q ss_pred EcCccCCeEEEEeCCCCCCCeeeeccccccCCCCCCCCccceEEEecCCcEEEEEcCeeEEEec--cCCeEEEeecccCC
Q 048017 196 VGGRRVFTYEFYPKIDSLSSSLYLRFLIETRDPGEENNLYPFLHLLPDGNLFIFANRRSILFDY--INNKLVKEFPVIPG 273 (566)
Q Consensus 196 vGG~~~~s~E~yP~~~~~~~w~~~p~l~~~~d~~~~~~~yp~~~~l~~G~Ifv~Gg~~~e~yDp--~t~~W~~~~p~lp~ 273 (566)
+|-.. -++-.++...+|...++..+. . ...+ ....+.++.+.+++... .+|-. ...+|.. +.. +.
T Consensus 77 vG~~g----~ll~T~DgG~tW~~v~l~~~l-p----gs~~-~i~~l~~~~~~l~~~~G-~iy~T~DgG~tW~~-~~~-~~ 143 (302)
T PF14870_consen 77 VGEPG----LLLHTTDGGKTWERVPLSSKL-P----GSPF-GITALGDGSAELAGDRG-AIYRTTDGGKTWQA-VVS-ET 143 (302)
T ss_dssp EEETT----EEEEESSTTSS-EE----TT--S----S-EE-EEEEEETTEEEEEETT---EEEESSTTSSEEE-EE--S-
T ss_pred EcCCc----eEEEecCCCCCcEEeecCCCC-C----CCee-EEEEcCCCcEEEEcCCC-cEEEeCCCCCCeeE-ccc-CC
Confidence 87431 133222234578765432110 0 0111 23344566777766543 33432 2358974 321 11
Q ss_pred CCCCccCCCCce-eeecccccCCCCCCCCCCCCCCEEEEEcCCCCCccccccccccccccCCeeEEEEeeCCCCCeEEec
Q 048017 274 NDKRNYPSTGSS-ILLPVKLSAGSDGNGTAALPDAEVMVCGGAPAGAFIKSDKESVYVEASRTCGRLKVTDKYPVWSMEF 352 (566)
Q Consensus 274 ~~~r~~~~~g~a-vllpl~~~~~~~~~~y~~~~~gkI~v~GG~~~~~~~~~~~~~~~~pa~~s~~~~d~~~~~~~W~~~~ 352 (566)
.|+. .+..+ . +|++++++-.. .-| ...|+. ...|+.-.
T Consensus 144 --------~gs~~~~~r~-----------~---dG~~vavs~~G-~~~----------------~s~~~G--~~~w~~~~ 182 (302)
T PF14870_consen 144 --------SGSINDITRS-----------S---DGRYVAVSSRG-NFY----------------SSWDPG--QTTWQPHN 182 (302)
T ss_dssp -----------EEEEEE------------T---TS-EEEEETTS-SEE----------------EEE-TT---SS-EEEE
T ss_pred --------cceeEeEEEC-----------C---CCcEEEEECcc-cEE----------------EEecCC--CccceEEc
Confidence 0111 11100 1 78887777432 111 112222 24698876
Q ss_pred cCCCcccceeEEccCCeEEEEcCCCCCCCCCcccc-Cc--CCcEEeccCCCCCCcce--eEEEEcCCCcEEEecCCC
Q 048017 353 MPMPRVMSDMLLLPSGDVIIINGASNGTAGWEDAE-EP--DRRFVVLNPSKIPRMYH--SSAVVLPDGRILVGGSNP 424 (566)
Q Consensus 353 M~~~R~~~~~vvLpdG~V~vvGG~~~g~~~~~~~y-dP--t~~Wt~~~~~~~~R~yh--s~a~LlpdG~V~v~GG~~ 424 (566)
.+..|..-++.--+|+.++++. . |.. ...- +| .++|++-. .++....+ -...--+++.|+++||..
T Consensus 183 r~~~~riq~~gf~~~~~lw~~~--~-Gg~--~~~s~~~~~~~~w~~~~-~~~~~~~~~~ld~a~~~~~~~wa~gg~G 253 (302)
T PF14870_consen 183 RNSSRRIQSMGFSPDGNLWMLA--R-GGQ--IQFSDDPDDGETWSEPI-IPIKTNGYGILDLAYRPPNEIWAVGGSG 253 (302)
T ss_dssp --SSS-EEEEEE-TTS-EEEEE--T-TTE--EEEEE-TTEEEEE---B--TTSS--S-EEEEEESSSS-EEEEESTT
T ss_pred cCccceehhceecCCCCEEEEe--C-CcE--EEEccCCCCcccccccc-CCcccCceeeEEEEecCCCCEEEEeCCc
Confidence 6666665666677999998865 1 211 1111 34 67888722 33322222 223446889999999874
No 57
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=92.32 E-value=17 Score=38.37 Aligned_cols=53 Identities=13% Similarity=0.131 Sum_probs=28.7
Q ss_pred EEEEECCCCc--EEeCcCCCcccccCCeecCCCcEEEEcCCCCCCCeEEEEcCCCCCCCcccc
Q 048017 111 SVLYDIASNT--FRPLLLQTDTWCSSGAVLSDGTLVQTGGYNVGDRVIRLFTPCNDEGCDWVE 171 (566)
Q Consensus 111 ~~~yDp~t~~--w~~l~~~~~~~c~~~~~l~dG~l~vvGG~~~g~~~v~~ydP~~~~t~~W~~ 171 (566)
+.+||+++++ |+.-.. ...+. +.++.++++|+... . ..+..+|+.+. ...|+.
T Consensus 77 v~a~d~~tG~~~W~~~~~--~~~~~-~p~v~~~~v~v~~~-~---g~l~ald~~tG-~~~W~~ 131 (377)
T TIGR03300 77 VVALDAETGKRLWRVDLD--ERLSG-GVGADGGLVFVGTE-K---GEVIALDAEDG-KELWRA 131 (377)
T ss_pred EEEEEccCCcEeeeecCC--CCccc-ceEEcCCEEEEEcC-C---CEEEEEECCCC-cEeeee
Confidence 6788888776 653221 12222 33444566665432 2 46888998622 335754
No 58
>PF13854 Kelch_5: Kelch motif
Probab=92.24 E-value=0.15 Score=36.27 Aligned_cols=24 Identities=25% Similarity=0.540 Sum_probs=21.3
Q ss_pred cCCCcccceeEEccCCeEEEEcCCC
Q 048017 353 MPMPRVMSDMLLLPSGDVIIINGAS 377 (566)
Q Consensus 353 M~~~R~~~~~vvLpdG~V~vvGG~~ 377 (566)
+|.+|..|+++++ +++||+.||..
T Consensus 1 ~P~~R~~hs~~~~-~~~iyi~GG~~ 24 (42)
T PF13854_consen 1 IPSPRYGHSAVVV-GNNIYIFGGYS 24 (42)
T ss_pred CCCCccceEEEEE-CCEEEEEcCcc
Confidence 4789999998876 89999999987
No 59
>PRK13684 Ycf48-like protein; Provisional
Probab=92.23 E-value=8.3 Score=40.46 Aligned_cols=123 Identities=15% Similarity=0.127 Sum_probs=64.7
Q ss_pred ECCCCcEEeCcCCCcccccCCeecCCCcEEEEcCCCCCCCeEEEEc-CCCCCCCcccccCcccccccC-cceEEEecCCc
Q 048017 115 DIASNTFRPLLLQTDTWCSSGAVLSDGTLVQTGGYNVGDRVIRLFT-PCNDEGCDWVELSKNLWDRRW-YASNQILPDNR 192 (566)
Q Consensus 115 Dp~t~~w~~l~~~~~~~c~~~~~l~dG~l~vvGG~~~g~~~v~~yd-P~~~~t~~W~~~~~~M~~~R~-y~s~~~L~dG~ 192 (566)
|....+|+.+.........+.....+|+++++|... ..++. .. +..+|+..........+ ..+++..++++
T Consensus 200 ~~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg~~G-----~~~~~s~d--~G~sW~~~~~~~~~~~~~l~~v~~~~~~~ 272 (334)
T PRK13684 200 EPGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLARGG-----QIRFNDPD--DLESWSKPIIPEITNGYGYLDLAYRTPGE 272 (334)
T ss_pred CCCCCeEEEeeCCCcccceeeeEcCCCCEEEEecCC-----EEEEccCC--CCCccccccCCccccccceeeEEEcCCCC
Confidence 444567988866555555556667789999987532 22342 22 15689965321111122 23445556788
Q ss_pred EEEEcCccCCeEEEEeCCCCCCCeeeeccccccCCCCCCCCccceEEEecCCcEEEEEcCee
Q 048017 193 IIVVGGRRVFTYEFYPKIDSLSSSLYLRFLIETRDPGEENNLYPFLHLLPDGNLFIFANRRS 254 (566)
Q Consensus 193 VyvvGG~~~~s~E~yP~~~~~~~w~~~p~l~~~~d~~~~~~~yp~~~~l~~G~Ifv~Gg~~~ 254 (566)
++++|... .+|-..+....|...+..... ..++|. .....++++|+.|+...
T Consensus 273 ~~~~G~~G----~v~~S~d~G~tW~~~~~~~~~-----~~~~~~-~~~~~~~~~~~~G~~G~ 324 (334)
T PRK13684 273 IWAGGGNG----TLLVSKDGGKTWEKDPVGEEV-----PSNFYK-IVFLDPEKGFVLGQRGV 324 (334)
T ss_pred EEEEcCCC----eEEEeCCCCCCCeECCcCCCC-----CcceEE-EEEeCCCceEEECCCce
Confidence 98887643 133112223467654321111 112342 33345788888877543
No 60
>PF13854 Kelch_5: Kelch motif
Probab=91.91 E-value=0.17 Score=35.99 Aligned_cols=23 Identities=26% Similarity=0.375 Sum_probs=20.5
Q ss_pred ccccCcceEEEecCCcEEEEcCcc
Q 048017 177 WDRRWYASNQILPDNRIIVVGGRR 200 (566)
Q Consensus 177 ~~~R~y~s~~~L~dG~VyvvGG~~ 200 (566)
+.+|+.|++++. +++||+.||..
T Consensus 2 P~~R~~hs~~~~-~~~iyi~GG~~ 24 (42)
T PF13854_consen 2 PSPRYGHSAVVV-GNNIYIFGGYS 24 (42)
T ss_pred CCCccceEEEEE-CCEEEEEcCcc
Confidence 568999999988 79999999987
No 61
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=91.69 E-value=15 Score=36.38 Aligned_cols=133 Identities=11% Similarity=0.083 Sum_probs=64.6
Q ss_pred eEEEEECCCCcEEeCcCCCcccccCCeecCCCcE-EEEcCCCCCCCeEEEEcCCCCCCCcccccCcccccccCcceEEEe
Q 048017 110 HSVLYDIASNTFRPLLLQTDTWCSSGAVLSDGTL-VQTGGYNVGDRVIRLFTPCNDEGCDWVELSKNLWDRRWYASNQIL 188 (566)
Q Consensus 110 ~~~~yDp~t~~w~~l~~~~~~~c~~~~~l~dG~l-~vvGG~~~g~~~v~~ydP~~~~t~~W~~~~~~M~~~R~y~s~~~L 188 (566)
.+.+||+.+++....-.... ...+....+||+. |++++. ...+.+||.. +.+.... +.....-...+..
T Consensus 12 ~v~~~d~~t~~~~~~~~~~~-~~~~l~~~~dg~~l~~~~~~---~~~v~~~d~~---~~~~~~~---~~~~~~~~~~~~~ 81 (300)
T TIGR03866 12 TISVIDTATLEVTRTFPVGQ-RPRGITLSKDGKLLYVCASD---SDTIQVIDLA---TGEVIGT---LPSGPDPELFALH 81 (300)
T ss_pred EEEEEECCCCceEEEEECCC-CCCceEECCCCCEEEEEECC---CCeEEEEECC---CCcEEEe---ccCCCCccEEEEC
Confidence 36677877765433221111 1223455678874 566553 2578899987 5544321 1111111234455
Q ss_pred cCCcEEEEcCccCCeEEEE-eCCCCCCCeeeeccccccCCCCCCCCccc-eEEEecCCcEEEEEcCe---eEEEeccCCe
Q 048017 189 PDNRIIVVGGRRVFTYEFY-PKIDSLSSSLYLRFLIETRDPGEENNLYP-FLHLLPDGNLFIFANRR---SILFDYINNK 263 (566)
Q Consensus 189 ~dG~VyvvGG~~~~s~E~y-P~~~~~~~w~~~p~l~~~~d~~~~~~~yp-~~~~l~~G~Ifv~Gg~~---~e~yDp~t~~ 263 (566)
+||+.+.+.+.....+.+| ..+. ......+. . ..+ .+...++|++++++... ...||..+.+
T Consensus 82 ~~g~~l~~~~~~~~~l~~~d~~~~--~~~~~~~~--~---------~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~ 148 (300)
T TIGR03866 82 PNGKILYIANEDDNLVTVIDIETR--KVLAEIPV--G---------VEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYE 148 (300)
T ss_pred CCCCEEEEEcCCCCeEEEEECCCC--eEEeEeeC--C---------CCcceEEECCCCCEEEEEecCCCeEEEEeCCCCe
Confidence 6777544443333345556 3321 00111110 0 011 23446799988887643 3457887765
Q ss_pred EE
Q 048017 264 LV 265 (566)
Q Consensus 264 W~ 265 (566)
..
T Consensus 149 ~~ 150 (300)
T TIGR03866 149 IV 150 (300)
T ss_pred EE
Confidence 43
No 62
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=90.37 E-value=30 Score=37.54 Aligned_cols=38 Identities=8% Similarity=0.183 Sum_probs=25.6
Q ss_pred eEEEEeeCCCCCeEEe-ccCCCcccceeEEccCCeEEEEcCCC
Q 048017 336 CGRLKVTDKYPVWSME-FMPMPRVMSDMLLLPSGDVIIINGAS 377 (566)
Q Consensus 336 ~~~~d~~~~~~~W~~~-~M~~~R~~~~~vvLpdG~V~vvGG~~ 377 (566)
+-.||. ..|+.. .|.++---.++.+-||++..++|+.+
T Consensus 262 VKVfd~----t~~Kvv~s~~~~~pvLsiavs~dd~t~viGmsn 300 (487)
T KOG0310|consen 262 VKVFDT----TNYKVVHSWKYPGPVLSIAVSPDDQTVVIGMSN 300 (487)
T ss_pred eEEEEc----cceEEEEeeecccceeeEEecCCCceEEEeccc
Confidence 445553 357766 56555444556677899999999876
No 63
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=90.18 E-value=25 Score=36.30 Aligned_cols=138 Identities=7% Similarity=-0.050 Sum_probs=65.0
Q ss_pred EEEEECCC-CcEEeCcCCCcc-cccCCeecCCCcEEEEcCCCCCCCeEEEEcCCCCCCCcccccCcccccccCcceEEEe
Q 048017 111 SVLYDIAS-NTFRPLLLQTDT-WCSSGAVLSDGTLVQTGGYNVGDRVIRLFTPCNDEGCDWVELSKNLWDRRWYASNQIL 188 (566)
Q Consensus 111 ~~~yDp~t-~~w~~l~~~~~~-~c~~~~~l~dG~l~vvGG~~~g~~~v~~ydP~~~~t~~W~~~~~~M~~~R~y~s~~~L 188 (566)
+.+||..+ ++++.+...... ....-++-+||+.+.+|+.. ...+..|+... ..+++.... ...+......+.-
T Consensus 14 I~~~~~~~~g~l~~~~~~~~~~~~~~l~~spd~~~lyv~~~~--~~~i~~~~~~~--~g~l~~~~~-~~~~~~p~~i~~~ 88 (330)
T PRK11028 14 IHVWNLNHEGALTLLQVVDVPGQVQPMVISPDKRHLYVGVRP--EFRVLSYRIAD--DGALTFAAE-SPLPGSPTHISTD 88 (330)
T ss_pred EEEEEECCCCceeeeeEEecCCCCccEEECCCCCEEEEEECC--CCcEEEEEECC--CCceEEeee-ecCCCCceEEEEC
Confidence 56777754 456554432211 11123445688866666543 35677777641 345544332 2222222234555
Q ss_pred cCCcEEEEcCccCCeEEEE-eCCCCCCCeeeeccccccCCCCCCCCccceEE-EecCCcEEEEEc---CeeEEEeccCC
Q 048017 189 PDNRIIVVGGRRVFTYEFY-PKIDSLSSSLYLRFLIETRDPGEENNLYPFLH-LLPDGNLFIFAN---RRSILFDYINN 262 (566)
Q Consensus 189 ~dG~VyvvGG~~~~s~E~y-P~~~~~~~w~~~p~l~~~~d~~~~~~~yp~~~-~l~~G~Ifv~Gg---~~~e~yDp~t~ 262 (566)
+||+.+.+.......+-+| ..++ .........+. ....|+.. +.++|+.+++.+ ....+||..++
T Consensus 89 ~~g~~l~v~~~~~~~v~v~~~~~~-g~~~~~~~~~~--------~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~ 158 (330)
T PRK11028 89 HQGRFLFSASYNANCVSVSPLDKD-GIPVAPIQIIE--------GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDD 158 (330)
T ss_pred CCCCEEEEEEcCCCeEEEEEECCC-CCCCCceeecc--------CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCC
Confidence 6887555555444445556 3221 00001111110 01123333 456887554433 56788998764
No 64
>KOG2437 consensus Muskelin [Signal transduction mechanisms]
Probab=90.18 E-value=0.31 Score=52.46 Aligned_cols=114 Identities=20% Similarity=0.216 Sum_probs=73.9
Q ss_pred ccceeEEEEeeC--CeEEEEeccCCCCCCCCCCCCccccCCCCCCCcccceEEEEECCCCcEEeCcC----CCcccccCC
Q 048017 62 GISAMHMQVLNN--DKVIIFDRTDMGPSNLSLPIDKCRKEGDVGQLDCTAHSVLYDIASNTFRPLLL----QTDTWCSSG 135 (566)
Q Consensus 62 ~~~a~h~~~l~~--gkV~~~gg~~~~~s~~~~p~G~~~~~~~~~~~~~~~~~~~yDp~t~~w~~l~~----~~~~~c~~~ 135 (566)
..+..|-.|... .-||++||.+ |.. .......|.-..+.|+.... +..+.|+--
T Consensus 259 ~~RgGHQMV~~~~~~CiYLYGGWd-G~~-------------------~l~DFW~Y~v~e~~W~~iN~~t~~PG~RsCHRM 318 (723)
T KOG2437|consen 259 GMRGGHQMVIDVQTECVYLYGGWD-GTQ-------------------DLADFWAYSVKENQWTCINRDTEGPGARSCHRM 318 (723)
T ss_pred cccCcceEEEeCCCcEEEEecCcc-cch-------------------hHHHHHhhcCCcceeEEeecCCCCCcchhhhhh
Confidence 456677666544 4899999986 221 12345688889999998764 235567643
Q ss_pred ee-cCCCcEEEEcCCC--------CCCCeEEEEcCCCCCCCcccccCcccccc-------cCcceEEEecC-CcEEEEcC
Q 048017 136 AV-LSDGTLVQTGGYN--------VGDRVIRLFTPCNDEGCDWVELSKNLWDR-------RWYASNQILPD-NRIIVVGG 198 (566)
Q Consensus 136 ~~-l~dG~l~vvGG~~--------~g~~~v~~ydP~~~~t~~W~~~~~~M~~~-------R~y~s~~~L~d-G~VyvvGG 198 (566)
+. ....++|..|-+. ++...++.||-. ++.|.-+. |... -+-|.+++-.+ |-|||.||
T Consensus 319 Vid~S~~KLYLlG~Y~~sS~r~~~s~RsDfW~FDi~---~~~W~~ls--~dt~~dGGP~~vfDHqM~Vd~~k~~iyVfGG 393 (723)
T KOG2437|consen 319 VIDISRRKLYLLGRYLDSSVRNSKSLRSDFWRFDID---TNTWMLLS--EDTAADGGPKLVFDHQMCVDSEKHMIYVFGG 393 (723)
T ss_pred hhhhhHhHHhhhhhccccccccccccccceEEEecC---CceeEEec--ccccccCCcceeecceeeEecCcceEEEecC
Confidence 22 1235899999764 234678999998 89998764 3322 34466666632 34999999
Q ss_pred cc
Q 048017 199 RR 200 (566)
Q Consensus 199 ~~ 200 (566)
+.
T Consensus 394 r~ 395 (723)
T KOG2437|consen 394 RI 395 (723)
T ss_pred ee
Confidence 74
No 65
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=89.75 E-value=19 Score=34.33 Aligned_cols=133 Identities=21% Similarity=0.267 Sum_probs=62.5
Q ss_pred EEEEECCCCcEEeCcCCCcccccCCeecCCCcEEEEcCCCCCCCeEEEEcCCCCCCCcccccCccccccc-CcceEEEec
Q 048017 111 SVLYDIASNTFRPLLLQTDTWCSSGAVLSDGTLVQTGGYNVGDRVIRLFTPCNDEGCDWVELSKNLWDRR-WYASNQILP 189 (566)
Q Consensus 111 ~~~yDp~t~~w~~l~~~~~~~c~~~~~l~dG~l~vvGG~~~g~~~v~~ydP~~~~t~~W~~~~~~M~~~R-~y~s~~~L~ 189 (566)
+.+||..+++-......+..........++++.+++++.. ..+.+||.. +.+.. .. +.... .-.+....+
T Consensus 33 i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~---~~i~i~~~~---~~~~~--~~-~~~~~~~i~~~~~~~ 103 (289)
T cd00200 33 IKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSD---KTIRLWDLE---TGECV--RT-LTGHTSYVSSVAFSP 103 (289)
T ss_pred EEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCC---CeEEEEEcC---cccce--EE-EeccCCcEEEEEEcC
Confidence 5677777664221111111112233455677788888753 578889887 33211 11 11111 122334445
Q ss_pred CCcEEEEcCccCCeEEEE-eCCCCCCCeeeeccccccCCCCCCCCccceEEEecCCcEEEEEc--CeeEEEeccCCeE
Q 048017 190 DNRIIVVGGRRVFTYEFY-PKIDSLSSSLYLRFLIETRDPGEENNLYPFLHLLPDGNLFIFAN--RRSILFDYINNKL 264 (566)
Q Consensus 190 dG~VyvvGG~~~~s~E~y-P~~~~~~~w~~~p~l~~~~d~~~~~~~yp~~~~l~~G~Ifv~Gg--~~~e~yDp~t~~W 264 (566)
++++++.|+.+ ..+.+| ..+. ....... ...+ .--.+...+++++++.+. ....+||..+++-
T Consensus 104 ~~~~~~~~~~~-~~i~~~~~~~~--~~~~~~~---~~~~------~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~ 169 (289)
T cd00200 104 DGRILSSSSRD-KTIKVWDVETG--KCLTTLR---GHTD------WVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKC 169 (289)
T ss_pred CCCEEEEecCC-CeEEEEECCCc--EEEEEec---cCCC------cEEEEEEcCcCCEEEEEcCCCcEEEEEcccccc
Confidence 66777777743 344555 3321 0111111 0000 001222345677777764 3567888876543
No 66
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=89.75 E-value=22 Score=35.04 Aligned_cols=75 Identities=19% Similarity=0.092 Sum_probs=46.4
Q ss_pred eEEEEECCCCcEEeCcCCCcccccCCeec-CCCcEEEEcCCCCCCCeEEEEcCCCCCCCcccccCccccc---c-cCcce
Q 048017 110 HSVLYDIASNTFRPLLLQTDTWCSSGAVL-SDGTLVQTGGYNVGDRVIRLFTPCNDEGCDWVELSKNLWD---R-RWYAS 184 (566)
Q Consensus 110 ~~~~yDp~t~~w~~l~~~~~~~c~~~~~l-~dG~l~vvGG~~~g~~~v~~ydP~~~~t~~W~~~~~~M~~---~-R~y~s 184 (566)
.+..||+.+++.+...... ..+.++. .+|++|+.... ...++|+. +.+++.+.. ... + ..-.-
T Consensus 23 ~i~~~~~~~~~~~~~~~~~---~~G~~~~~~~g~l~v~~~~-----~~~~~d~~---~g~~~~~~~-~~~~~~~~~~~ND 90 (246)
T PF08450_consen 23 RIYRVDPDTGEVEVIDLPG---PNGMAFDRPDGRLYVADSG-----GIAVVDPD---TGKVTVLAD-LPDGGVPFNRPND 90 (246)
T ss_dssp EEEEEETTTTEEEEEESSS---EEEEEEECTTSEEEEEETT-----CEEEEETT---TTEEEEEEE-EETTCSCTEEEEE
T ss_pred EEEEEECCCCeEEEEecCC---CceEEEEccCCEEEEEEcC-----ceEEEecC---CCcEEEEee-ccCCCcccCCCce
Confidence 3678899988876544332 3334444 68999988653 35667998 788877665 421 1 11234
Q ss_pred EEEecCCcEEEE
Q 048017 185 NQILPDNRIIVV 196 (566)
Q Consensus 185 ~~~L~dG~Vyvv 196 (566)
.++-++|++|+.
T Consensus 91 ~~vd~~G~ly~t 102 (246)
T PF08450_consen 91 VAVDPDGNLYVT 102 (246)
T ss_dssp EEE-TTS-EEEE
T ss_pred EEEcCCCCEEEE
Confidence 666779999985
No 67
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=89.58 E-value=12 Score=36.95 Aligned_cols=143 Identities=20% Similarity=0.111 Sum_probs=75.1
Q ss_pred EEEECCCCcEEeCcCC-----CcccccCCeecCCCcEEEEcCCC--C-CC--CeEEEEcCCCCCCCcccccCcccccccC
Q 048017 112 VLYDIASNTFRPLLLQ-----TDTWCSSGAVLSDGTLVQTGGYN--V-GD--RVIRLFTPCNDEGCDWVELSKNLWDRRW 181 (566)
Q Consensus 112 ~~yDp~t~~w~~l~~~-----~~~~c~~~~~l~dG~l~vvGG~~--~-g~--~~v~~ydP~~~~t~~W~~~~~~M~~~R~ 181 (566)
.++|+++++++.+... ...++...++-++|+||+.-=.. . .. ..+.++++. .+.+.+...|..+
T Consensus 63 ~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~----~~~~~~~~~~~~p-- 136 (246)
T PF08450_consen 63 AVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD----GKVTVVADGLGFP-- 136 (246)
T ss_dssp EEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT----SEEEEEEEEESSE--
T ss_pred EEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC----CeEEEEecCcccc--
Confidence 4569999999887643 34567778888999999864211 1 11 457888886 2333333223322
Q ss_pred cceEEEecCCcEEEEcCccCCeEEEE-eCCCCCCCeee-eccccccCCCCCCCCccceE-EEecCCcEEEE--EcCeeEE
Q 048017 182 YASNQILPDNRIIVVGGRRVFTYEFY-PKIDSLSSSLY-LRFLIETRDPGEENNLYPFL-HLLPDGNLFIF--ANRRSIL 256 (566)
Q Consensus 182 y~s~~~L~dG~VyvvGG~~~~s~E~y-P~~~~~~~w~~-~p~l~~~~d~~~~~~~yp~~-~~l~~G~Ifv~--Gg~~~e~ 256 (566)
.+.+.-+||+.+.+.-+....+..| .... ...+.. ..+..-. . ..-+|-. .+-.+|+||+. ++..+.+
T Consensus 137 -NGi~~s~dg~~lyv~ds~~~~i~~~~~~~~-~~~~~~~~~~~~~~-~----~~g~pDG~~vD~~G~l~va~~~~~~I~~ 209 (246)
T PF08450_consen 137 -NGIAFSPDGKTLYVADSFNGRIWRFDLDAD-GGELSNRRVFIDFP-G----GPGYPDGLAVDSDGNLWVADWGGGRIVV 209 (246)
T ss_dssp -EEEEEETTSSEEEEEETTTTEEEEEEEETT-TCCEEEEEEEEE-S-S----SSCEEEEEEEBTTS-EEEEEETTTEEEE
T ss_pred -cceEECCcchheeecccccceeEEEecccc-ccceeeeeeEEEcC-C----CCcCCCcceEcCCCCEEEEEcCCCEEEE
Confidence 3556667887544433333344555 3221 111211 1111100 0 0123443 34468999987 5678899
Q ss_pred EeccCCeEEEee
Q 048017 257 FDYINNKLVKEF 268 (566)
Q Consensus 257 yDp~t~~W~~~~ 268 (566)
|||. ++-...+
T Consensus 210 ~~p~-G~~~~~i 220 (246)
T PF08450_consen 210 FDPD-GKLLREI 220 (246)
T ss_dssp EETT-SCEEEEE
T ss_pred ECCC-ccEEEEE
Confidence 9999 4444334
No 68
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=88.14 E-value=17 Score=38.37 Aligned_cols=60 Identities=13% Similarity=0.152 Sum_probs=43.2
Q ss_pred eeEEEEeeCCeEEEEeccCCCCCCCCCCCCccccCCCCCCCcccceEEEEECCCCcEEeCcCCCcccccCCeecCCCcEE
Q 048017 65 AMHMQVLNNDKVIIFDRTDMGPSNLSLPIDKCRKEGDVGQLDCTAHSVLYDIASNTFRPLLLQTDTWCSSGAVLSDGTLV 144 (566)
Q Consensus 65 a~h~~~l~~gkV~~~gg~~~~~s~~~~p~G~~~~~~~~~~~~~~~~~~~yDp~t~~w~~l~~~~~~~c~~~~~l~dG~l~ 144 (566)
.++-+.+.+.||+.++... .+-+||++|.....++.+....+...++..+++||
T Consensus 68 ~~~F~al~gskIv~~d~~~--------------------------~t~vyDt~t~av~~~P~l~~pk~~pisv~VG~~LY 121 (342)
T PF07893_consen 68 SMDFFALHGSKIVAVDQSG--------------------------RTLVYDTDTRAVATGPRLHSPKRCPISVSVGDKLY 121 (342)
T ss_pred eeEEEEecCCeEEEEcCCC--------------------------CeEEEECCCCeEeccCCCCCCCcceEEEEeCCeEE
Confidence 4556666788999986531 26799999999999988765444444455578899
Q ss_pred EEcCCC
Q 048017 145 QTGGYN 150 (566)
Q Consensus 145 vvGG~~ 150 (566)
+.....
T Consensus 122 ~m~~~~ 127 (342)
T PF07893_consen 122 AMDRSP 127 (342)
T ss_pred EeeccC
Confidence 998753
No 69
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=87.42 E-value=9.7 Score=40.16 Aligned_cols=118 Identities=11% Similarity=0.036 Sum_probs=71.5
Q ss_pred CCCcEEEEcCCCCCCCeEEEEcCCCCCCCcccccCcccccccCcceEEEecCCcEEEEcCccCC---------eEEEE--
Q 048017 139 SDGTLVQTGGYNVGDRVIRLFTPCNDEGCDWVELSKNLWDRRWYASNQILPDNRIIVVGGRRVF---------TYEFY-- 207 (566)
Q Consensus 139 ~dG~l~vvGG~~~g~~~v~~ydP~~~~t~~W~~~~~~M~~~R~y~s~~~L~dG~VyvvGG~~~~---------s~E~y-- 207 (566)
.+.+|+.++.. ..+-+||+. +..-..+|. |..+..++.++.+ ++++||+...... ..|.+
T Consensus 75 ~gskIv~~d~~----~~t~vyDt~---t~av~~~P~-l~~pk~~pisv~V-G~~LY~m~~~~~~~~~~~~~~~~FE~l~~ 145 (342)
T PF07893_consen 75 HGSKIVAVDQS----GRTLVYDTD---TRAVATGPR-LHSPKRCPISVSV-GDKLYAMDRSPFPEPAGRPDFPCFEALVY 145 (342)
T ss_pred cCCeEEEEcCC----CCeEEEECC---CCeEeccCC-CCCCCcceEEEEe-CCeEEEeeccCccccccCccceeEEEecc
Confidence 57788888664 336789999 777777777 8888888877777 6789999876321 56655
Q ss_pred -eC-----CCCCCCeeeeccccccCCCCCCCCccceEEEec-CCcEEEE-EcC--eeEEEeccCCeEEE
Q 048017 208 -PK-----IDSLSSSLYLRFLIETRDPGEENNLYPFLHLLP-DGNLFIF-ANR--RSILFDYINNKLVK 266 (566)
Q Consensus 208 -P~-----~~~~~~w~~~p~l~~~~d~~~~~~~yp~~~~l~-~G~Ifv~-Gg~--~~e~yDp~t~~W~~ 266 (566)
+. ....-.|..+|...-..+. ......-.++++. +..|||. -+. ....||..+.+|.+
T Consensus 146 ~~~~~~~~~~~~w~W~~LP~PPf~~~~-~~~~~~i~sYavv~g~~I~vS~~~~~~GTysfDt~~~~W~~ 213 (342)
T PF07893_consen 146 RPPPDDPSPEESWSWRSLPPPPFVRDR-RYSDYRITSYAVVDGRTIFVSVNGRRWGTYSFDTESHEWRK 213 (342)
T ss_pred ccccccccCCCcceEEcCCCCCccccC-CcccceEEEEEEecCCeEEEEecCCceEEEEEEcCCcceee
Confidence 21 1111134444322111110 0000002344555 4569984 444 58899999999985
No 70
>KOG2437 consensus Muskelin [Signal transduction mechanisms]
Probab=86.41 E-value=0.66 Score=50.10 Aligned_cols=131 Identities=19% Similarity=0.213 Sum_probs=79.9
Q ss_pred CceEEccC---CCccceeEEEEeeCC--eEEEEeccCCCCCCCCCCCCccccCCCCCCCcccceEEEEECCCCcEEeCcC
Q 048017 52 GQWVLLQS---SIGISAMHMQVLNND--KVIIFDRTDMGPSNLSLPIDKCRKEGDVGQLDCTAHSVLYDIASNTFRPLLL 126 (566)
Q Consensus 52 g~W~~l~~---~~~~~a~h~~~l~~g--kV~~~gg~~~~~s~~~~p~G~~~~~~~~~~~~~~~~~~~yDp~t~~w~~l~~ 126 (566)
..|.-.-- .++.++-|-.|.... |+|++|.+- +.|... ..+.-....+||..++.|.-|..
T Consensus 298 ~~W~~iN~~t~~PG~RsCHRMVid~S~~KLYLlG~Y~-~sS~r~-------------~~s~RsDfW~FDi~~~~W~~ls~ 363 (723)
T KOG2437|consen 298 NQWTCINRDTEGPGARSCHRMVIDISRRKLYLLGRYL-DSSVRN-------------SKSLRSDFWRFDIDTNTWMLLSE 363 (723)
T ss_pred ceeEEeecCCCCCcchhhhhhhhhhhHhHHhhhhhcc-cccccc-------------ccccccceEEEecCCceeEEecc
Confidence 46887642 356777888887755 999999874 222111 11122357899999999998875
Q ss_pred CC-------cccccCCeecCCCc--EEEEcCCCC-----CCCeEEEEcCCCCCCCcccccCcc---------cccccCcc
Q 048017 127 QT-------DTWCSSGAVLSDGT--LVQTGGYNV-----GDRVIRLFTPCNDEGCDWVELSKN---------LWDRRWYA 183 (566)
Q Consensus 127 ~~-------~~~c~~~~~l~dG~--l~vvGG~~~-----g~~~v~~ydP~~~~t~~W~~~~~~---------M~~~R~y~ 183 (566)
.+ ..|-+ +.++...+ |||+||..- .......||-. ...|..++.. -...|-.+
T Consensus 364 dt~~dGGP~~vfDH-qM~Vd~~k~~iyVfGGr~~~~~e~~f~GLYaf~~~---~~~w~~l~e~~~~~~~vvE~~~sR~gh 439 (723)
T KOG2437|consen 364 DTAADGGPKLVFDH-QMCVDSEKHMIYVFGGRILTCNEPQFSGLYAFNCQ---CQTWKLLREDSCNAGPVVEDIQSRIGH 439 (723)
T ss_pred cccccCCcceeecc-eeeEecCcceEEEecCeeccCCCccccceEEEecC---CccHHHHHHHHhhcCcchhHHHHHHHH
Confidence 32 23433 33333334 999999741 12457788887 6778765421 12345556
Q ss_pred eEEEecCC-cEEEEcCcc
Q 048017 184 SNQILPDN-RIIVVGGRR 200 (566)
Q Consensus 184 s~~~L~dG-~VyvvGG~~ 200 (566)
.+...+|+ +.|+.||..
T Consensus 440 cmE~~~~n~~ly~fggq~ 457 (723)
T KOG2437|consen 440 CMEFHSKNRCLYVFGGQR 457 (723)
T ss_pred HHHhcCCCCeEEeccCcc
Confidence 66666655 556655543
No 71
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=86.31 E-value=16 Score=35.78 Aligned_cols=151 Identities=11% Similarity=0.091 Sum_probs=75.9
Q ss_pred CCcEEEEEcCeeEEEeccCCeEEEeecccCCCCCCccCCCCceeeecccccCCCCCCCCCCCCCCEEEEEcCCCCCcccc
Q 048017 243 DGNLFIFANRRSILFDYINNKLVKEFPVIPGNDKRNYPSTGSSILLPVKLSAGSDGNGTAALPDAEVMVCGGAPAGAFIK 322 (566)
Q Consensus 243 ~G~Ifv~Gg~~~e~yDp~t~~W~~~~p~lp~~~~r~~~~~g~avllpl~~~~~~~~~~y~~~~~gkI~v~GG~~~~~~~~ 322 (566)
||-|.+.......++||.|.+|. .+|+.+.. +.++... ...+-..+. .+.| ||+.+.....+.
T Consensus 5 nGLlc~~~~~~~~V~NP~T~~~~-~LP~~~~~--~~~~~~~-~~~~G~d~~----~~~Y------KVv~~~~~~~~~--- 67 (230)
T TIGR01640 5 DGLICFSYGKRLVVWNPSTGQSR-WLPTPKSR--RSNKESD-TYFLGYDPI----EKQY------KVLCFSDRSGNR--- 67 (230)
T ss_pred ceEEEEecCCcEEEECCCCCCEE-ecCCCCCc--ccccccc-eEEEeeccc----CCcE------EEEEEEeecCCC---
Confidence 45554443345678999999997 68753321 1221111 112222221 1233 777775432110
Q ss_pred ccccccccccCCeeEEEEeeCCCCCeEEe-ccC-CCcccceeEEccCCeEEEEcCCCCCCCC-CccccCc-CCcEEeccC
Q 048017 323 SDKESVYVEASRTCGRLKVTDKYPVWSME-FMP-MPRVMSDMLLLPSGDVIIINGASNGTAG-WEDAEEP-DRRFVVLNP 398 (566)
Q Consensus 323 ~~~~~~~~pa~~s~~~~d~~~~~~~W~~~-~M~-~~R~~~~~vvLpdG~V~vvGG~~~g~~~-~~~~ydP-t~~Wt~~~~ 398 (566)
....+++|++. ++.|+.. ..+ ........|. .+|.+|.+.-...+... ..-+||- +++|+..-+
T Consensus 68 ---------~~~~~~Vys~~--~~~Wr~~~~~~~~~~~~~~~v~-~~G~lyw~~~~~~~~~~~~IvsFDl~~E~f~~~i~ 135 (230)
T TIGR01640 68 ---------NQSEHQVYTLG--SNSWRTIECSPPHHPLKSRGVC-INGVLYYLAYTLKTNPDYFIVSFDVSSERFKEFIP 135 (230)
T ss_pred ---------CCccEEEEEeC--CCCccccccCCCCccccCCeEE-ECCEEEEEEEECCCCCcEEEEEEEcccceEeeeee
Confidence 12468899987 4799875 222 1111122444 49999998743222111 1346888 899995223
Q ss_pred CCCCCc-ce-eEEEEcCCCcEEEecC
Q 048017 399 SKIPRM-YH-SSAVVLPDGRILVGGS 422 (566)
Q Consensus 399 ~~~~R~-yh-s~a~LlpdG~V~v~GG 422 (566)
++..+. .+ ...+...+|++-++..
T Consensus 136 ~P~~~~~~~~~~~L~~~~G~L~~v~~ 161 (230)
T TIGR01640 136 LPCGNSDSVDYLSLINYKGKLAVLKQ 161 (230)
T ss_pred cCccccccccceEEEEECCEEEEEEe
Confidence 333332 11 1222223688776654
No 72
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=85.88 E-value=49 Score=34.67 Aligned_cols=262 Identities=16% Similarity=0.197 Sum_probs=120.4
Q ss_pred eEEEEECCCCcEEeCcCCCcccccCCeec-CC-CcEEEEcCCCCCCCeEEEEcCCCCCCCcccccCcccc-cccCcceEE
Q 048017 110 HSVLYDIASNTFRPLLLQTDTWCSSGAVL-SD-GTLVQTGGYNVGDRVIRLFTPCNDEGCDWVELSKNLW-DRRWYASNQ 186 (566)
Q Consensus 110 ~~~~yDp~t~~w~~l~~~~~~~c~~~~~l-~d-G~l~vvGG~~~g~~~v~~ydP~~~~t~~W~~~~~~M~-~~R~y~s~~ 186 (566)
.+..||.++++++.+......-...-..+ ++ ..||++.-.......+..|+...+ +.+.+.+.. .. .+..-...+
T Consensus 16 ~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~-~g~L~~~~~-~~~~g~~p~~i~ 93 (345)
T PF10282_consen 16 YVFRFDEETGTLTLVQTVAEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPD-TGTLTLLNS-VPSGGSSPCHIA 93 (345)
T ss_dssp EEEEEETTTTEEEEEEEEEESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETT-TTEEEEEEE-EEESSSCEEEEE
T ss_pred EEEEEcCCCCCceEeeeecCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCC-cceeEEeee-eccCCCCcEEEE
Confidence 35667889999987764211111122222 34 456766543212345555554311 456666554 33 344323334
Q ss_pred EecCCcEEEEcCccCCeEEEEeCCCCCCCee-ee-cccc----ccCCCCCCCCccceE-EEecCCcEEEE---EcCeeEE
Q 048017 187 ILPDNRIIVVGGRRVFTYEFYPKIDSLSSSL-YL-RFLI----ETRDPGEENNLYPFL-HLLPDGNLFIF---ANRRSIL 256 (566)
Q Consensus 187 ~L~dG~VyvvGG~~~~s~E~yP~~~~~~~w~-~~-p~l~----~~~d~~~~~~~yp~~-~~l~~G~Ifv~---Gg~~~e~ 256 (566)
.-+||+.+++.-..+.++.+|+-.. +... .. .... ... ........||. ...|||+.+++ |.+...+
T Consensus 94 ~~~~g~~l~vany~~g~v~v~~l~~--~g~l~~~~~~~~~~g~g~~-~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~ 170 (345)
T PF10282_consen 94 VDPDGRFLYVANYGGGSVSVFPLDD--DGSLGEVVQTVRHEGSGPN-PDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYV 170 (345)
T ss_dssp ECTTSSEEEEEETTTTEEEEEEECT--TSEEEEEEEEEESEEEESS-TTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEE
T ss_pred EecCCCEEEEEEccCCeEEEEEccC--CcccceeeeecccCCCCCc-ccccccccceeEEECCCCCEEEEEecCCCEEEE
Confidence 4467776666544445667773321 0111 11 1110 000 00012234554 34578885544 4466788
Q ss_pred EeccCCe--EEEeecc--c-CCCCCCccCCCCceeeecccccCCCCCCCCCCCCCCEEEEEcCCCCCccccccccccccc
Q 048017 257 FDYINNK--LVKEFPV--I-PGNDKRNYPSTGSSILLPVKLSAGSDGNGTAALPDAEVMVCGGAPAGAFIKSDKESVYVE 331 (566)
Q Consensus 257 yDp~t~~--W~~~~p~--l-p~~~~r~~~~~g~avllpl~~~~~~~~~~y~~~~~gkI~v~GG~~~~~~~~~~~~~~~~p 331 (566)
|+...+. ... ... + ++..+|. .++.| + ...+|++.-..
T Consensus 171 ~~~~~~~~~l~~-~~~~~~~~G~GPRh------~~f~p------------d---g~~~Yv~~e~s--------------- 213 (345)
T PF10282_consen 171 YDIDDDTGKLTP-VDSIKVPPGSGPRH------LAFSP------------D---GKYAYVVNELS--------------- 213 (345)
T ss_dssp EEE-TTS-TEEE-EEEEECSTTSSEEE------EEE-T------------T---SSEEEEEETTT---------------
T ss_pred EEEeCCCceEEE-eeccccccCCCCcE------EEEcC------------C---cCEEEEecCCC---------------
Confidence 8887655 432 111 1 2222332 22321 0 45677765432
Q ss_pred cCCeeEEEEeeCCCCCeEE---e-ccCC---Cc-ccceeEEccCCe-EEEEcCCCCCCCCCcccc--Cc-CCcEEeccCC
Q 048017 332 ASRTCGRLKVTDKYPVWSM---E-FMPM---PR-VMSDMLLLPSGD-VIIINGASNGTAGWEDAE--EP-DRRFVVLNPS 399 (566)
Q Consensus 332 a~~s~~~~d~~~~~~~W~~---~-~M~~---~R-~~~~~vvLpdG~-V~vvGG~~~g~~~~~~~y--dP-t~~Wt~~~~~ 399 (566)
+++..|+....+..++. . .++. .. .-+...+-|||+ |||.+-.... ..+| |+ +.+.+.+...
T Consensus 214 --~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~s----I~vf~~d~~~g~l~~~~~~ 287 (345)
T PF10282_consen 214 --NTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNS----ISVFDLDPATGTLTLVQTV 287 (345)
T ss_dssp --TEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTE----EEEEEECTTTTTEEEEEEE
T ss_pred --CcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCE----EEEEEEecCCCceEEEEEE
Confidence 45556666533345543 2 2322 11 233445668887 6776633211 2233 34 4555554433
Q ss_pred C----CCCcceeEEEEcCCCcEEEecCC
Q 048017 400 K----IPRMYHSSAVVLPDGRILVGGSN 423 (566)
Q Consensus 400 ~----~~R~yhs~a~LlpdG~V~v~GG~ 423 (566)
+ .||. ..+-|||+.+++++.
T Consensus 288 ~~~G~~Pr~----~~~s~~g~~l~Va~~ 311 (345)
T PF10282_consen 288 PTGGKFPRH----FAFSPDGRYLYVANQ 311 (345)
T ss_dssp EESSSSEEE----EEE-TTSSEEEEEET
T ss_pred eCCCCCccE----EEEeCCCCEEEEEec
Confidence 3 2442 335799997766553
No 73
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=85.53 E-value=47 Score=34.19 Aligned_cols=92 Identities=16% Similarity=0.139 Sum_probs=46.2
Q ss_pred EEEEECC-CCcEEeCcCCC--cccccCCeecCCCcEEEEcCCCCCCCeEEEEcCCCCCCCcccccCcccccccCcceEEE
Q 048017 111 SVLYDIA-SNTFRPLLLQT--DTWCSSGAVLSDGTLVQTGGYNVGDRVIRLFTPCNDEGCDWVELSKNLWDRRWYASNQI 187 (566)
Q Consensus 111 ~~~yDp~-t~~w~~l~~~~--~~~c~~~~~l~dG~l~vvGG~~~g~~~v~~ydP~~~~t~~W~~~~~~M~~~R~y~s~~~ 187 (566)
+..|+.. +++++.+.... ..-| ..++.++|+.+.+..+. ...+.+||...+ ......... +.....-++++.
T Consensus 59 i~~~~~~~~g~l~~~~~~~~~~~p~-~i~~~~~g~~l~v~~~~--~~~v~v~~~~~~-g~~~~~~~~-~~~~~~~~~~~~ 133 (330)
T PRK11028 59 VLSYRIADDGALTFAAESPLPGSPT-HISTDHQGRFLFSASYN--ANCVSVSPLDKD-GIPVAPIQI-IEGLEGCHSANI 133 (330)
T ss_pred EEEEEECCCCceEEeeeecCCCCce-EEEECCCCCEEEEEEcC--CCeEEEEEECCC-CCCCCceee-ccCCCcccEeEe
Confidence 4456654 45565443211 1112 23445688866665543 357778877521 111111111 222223345556
Q ss_pred ecCCcEEEEcCccCCeEEEE
Q 048017 188 LPDNRIIVVGGRRVFTYEFY 207 (566)
Q Consensus 188 L~dG~VyvvGG~~~~s~E~y 207 (566)
-+||+.+.+.......+.+|
T Consensus 134 ~p~g~~l~v~~~~~~~v~v~ 153 (330)
T PRK11028 134 DPDNRTLWVPCLKEDRIRLF 153 (330)
T ss_pred CCCCCEEEEeeCCCCEEEEE
Confidence 66887666666555667777
No 74
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=84.10 E-value=60 Score=34.17 Aligned_cols=54 Identities=15% Similarity=0.263 Sum_probs=30.5
Q ss_pred eEEEEECCCCc--EEeCcCCCcccccCCeecCCCcEEEEcCCCCCCCeEEEEcCCCCCCCcccc
Q 048017 110 HSVLYDIASNT--FRPLLLQTDTWCSSGAVLSDGTLVQTGGYNVGDRVIRLFTPCNDEGCDWVE 171 (566)
Q Consensus 110 ~~~~yDp~t~~--w~~l~~~~~~~c~~~~~l~dG~l~vvGG~~~g~~~v~~ydP~~~~t~~W~~ 171 (566)
.+.++|+++++ |+.-... . ..+...+.++++++..+ ...+..+|+.+. ...|+.
T Consensus 116 ~l~ald~~tG~~~W~~~~~~-~--~~~~p~v~~~~v~v~~~----~g~l~a~d~~tG-~~~W~~ 171 (377)
T TIGR03300 116 EVIALDAEDGKELWRAKLSS-E--VLSPPLVANGLVVVRTN----DGRLTALDAATG-ERLWTY 171 (377)
T ss_pred EEEEEECCCCcEeeeeccCc-e--eecCCEEECCEEEEECC----CCeEEEEEcCCC-ceeeEE
Confidence 56788887775 7643211 1 11223344677776543 245888998732 345864
No 75
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=83.40 E-value=49 Score=32.62 Aligned_cols=132 Identities=15% Similarity=0.160 Sum_probs=66.1
Q ss_pred EEEEECCCCcEEe-CcCCCcccccCCeecCCCcEEEEcCCCCCCCeEEEEcCCCCCCCcccccCcccccccCcceEEEec
Q 048017 111 SVLYDIASNTFRP-LLLQTDTWCSSGAVLSDGTLVQTGGYNVGDRVIRLFTPCNDEGCDWVELSKNLWDRRWYASNQILP 189 (566)
Q Consensus 111 ~~~yDp~t~~w~~-l~~~~~~~c~~~~~l~dG~l~vvGG~~~g~~~v~~ydP~~~~t~~W~~~~~~M~~~R~y~s~~~L~ 189 (566)
+.+||..+++... +...... ...++.++|+.+.+.+.. ...+.+||.. +.+- +.. +.....-.+.+.-+
T Consensus 55 v~~~d~~~~~~~~~~~~~~~~--~~~~~~~~g~~l~~~~~~--~~~l~~~d~~---~~~~--~~~-~~~~~~~~~~~~~~ 124 (300)
T TIGR03866 55 IQVIDLATGEVIGTLPSGPDP--ELFALHPNGKILYIANED--DNLVTVIDIE---TRKV--LAE-IPVGVEPEGMAVSP 124 (300)
T ss_pred EEEEECCCCcEEEeccCCCCc--cEEEECCCCCEEEEEcCC--CCeEEEEECC---CCeE--EeE-eeCCCCcceEEECC
Confidence 6788988877654 2222121 223455677755443322 2478899987 4321 111 22121123345557
Q ss_pred CCcEEEEcCccCCeEEEE-eCCCCCCCeeeeccccccCCCCCCCCccc-eEEEecCCcEEEEEc---CeeEEEeccCCeE
Q 048017 190 DNRIIVVGGRRVFTYEFY-PKIDSLSSSLYLRFLIETRDPGEENNLYP-FLHLLPDGNLFIFAN---RRSILFDYINNKL 264 (566)
Q Consensus 190 dG~VyvvGG~~~~s~E~y-P~~~~~~~w~~~p~l~~~~d~~~~~~~yp-~~~~l~~G~Ifv~Gg---~~~e~yDp~t~~W 264 (566)
||++++++.........| ..+. ......+ .. ..| .....++|+.+++++ ....+||.++.+.
T Consensus 125 dg~~l~~~~~~~~~~~~~d~~~~--~~~~~~~--~~---------~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~ 191 (300)
T TIGR03866 125 DGKIVVNTSETTNMAHFIDTKTY--EIVDNVL--VD---------QRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKV 191 (300)
T ss_pred CCCEEEEEecCCCeEEEEeCCCC--eEEEEEE--cC---------CCccEEEECCCCCEEEEEcCCCCEEEEEEcCccee
Confidence 899988877543333334 3221 0111111 00 012 223456888665543 3467899988765
Q ss_pred E
Q 048017 265 V 265 (566)
Q Consensus 265 ~ 265 (566)
.
T Consensus 192 ~ 192 (300)
T TIGR03866 192 I 192 (300)
T ss_pred e
Confidence 4
No 76
>PF13088 BNR_2: BNR repeat-like domain; PDB: 2F11_A 2F0Z_A 1VCU_B 2F25_B 1SO7_A 2F29_A 1SNT_A 2F13_A 2F28_A 2F27_A ....
Probab=80.17 E-value=8.8 Score=38.41 Aligned_cols=120 Identities=19% Similarity=0.233 Sum_probs=65.7
Q ss_pred CceEEccCCCcc-ceeEEEEe--eCCeEEEEeccCCCCCCCCCCCCccccCCCCCCCcccceEEEEECC-CCcEEeCcC-
Q 048017 52 GQWVLLQSSIGI-SAMHMQVL--NNDKVIIFDRTDMGPSNLSLPIDKCRKEGDVGQLDCTAHSVLYDIA-SNTFRPLLL- 126 (566)
Q Consensus 52 g~W~~l~~~~~~-~a~h~~~l--~~gkV~~~gg~~~~~s~~~~p~G~~~~~~~~~~~~~~~~~~~yDp~-t~~w~~l~~- 126 (566)
.+|+........ ...+..++ .+|+|+++-+.+ +.. + ....+... -.+|+....
T Consensus 145 ~tW~~~~~~~~~~~~~e~~~~~~~dG~l~~~~R~~-~~~--------~-------------~~~~~S~D~G~TWs~~~~~ 202 (275)
T PF13088_consen 145 KTWSSGSPIPDGQGECEPSIVELPDGRLLAVFRTE-GND--------D-------------IYISRSTDGGRTWSPPQPT 202 (275)
T ss_dssp SSEEEEEECECSEEEEEEEEEEETTSEEEEEEEEC-SST--------E-------------EEEEEESSTTSS-EEEEEE
T ss_pred ceeeccccccccCCcceeEEEECCCCcEEEEEEcc-CCC--------c-------------EEEEEECCCCCcCCCceec
Confidence 569887543222 45555554 699999997753 111 0 01112122 235665331
Q ss_pred -CCccccc-CCeecCCCcEEEEcCCCCCCCeEEEEcCCCCCCCcccccCccccccc----CcceEEEecCCcEEE
Q 048017 127 -QTDTWCS-SGAVLSDGTLVQTGGYNVGDRVIRLFTPCNDEGCDWVELSKNLWDRR----WYASNQILPDNRIIV 195 (566)
Q Consensus 127 -~~~~~c~-~~~~l~dG~l~vvGG~~~g~~~v~~ydP~~~~t~~W~~~~~~M~~~R----~y~s~~~L~dG~Vyv 195 (566)
.++..|. ....+.+|+++++....++...+.++=-.+ +..+|..... +...- .|++++.+.||+|+|
T Consensus 203 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~r~~l~l~~S~D-~g~tW~~~~~-i~~~~~~~~~Y~~~~~~~dg~l~i 275 (275)
T PF13088_consen 203 NLPNPNSSISLVRLSDGRLLLVYNNPDGRSNLSLYVSED-GGKTWSRPKT-IDDGPNGDSGYPSLTQLPDGKLYI 275 (275)
T ss_dssp ECSSCCEEEEEEECTTSEEEEEEECSSTSEEEEEEEECT-TCEEEEEEEE-EEEEE-CCEEEEEEEEEETTEEEE
T ss_pred ccCcccCCceEEEcCCCCEEEEEECCCCCCceEEEEEeC-CCCcCCccEE-EeCCCCCcEECCeeEEeCCCcCCC
Confidence 2222222 234467899999887433444444432221 1678987654 44333 699999999999986
No 77
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=79.99 E-value=75 Score=32.50 Aligned_cols=141 Identities=17% Similarity=0.113 Sum_probs=76.0
Q ss_pred eEEEEECCCCcEEeCcCCCc---ccccCCeecCCCcEEEEcCCCCCCCeEEEEcCCCCCCCcccccCcccccccCcceEE
Q 048017 110 HSVLYDIASNTFRPLLLQTD---TWCSSGAVLSDGTLVQTGGYNVGDRVIRLFTPCNDEGCDWVELSKNLWDRRWYASNQ 186 (566)
Q Consensus 110 ~~~~yDp~t~~w~~l~~~~~---~~c~~~~~l~dG~l~vvGG~~~g~~~v~~ydP~~~~t~~W~~~~~~M~~~R~y~s~~ 186 (566)
-...+||++...+..+...+ .--...++-.+|+|..+|-..- --..||. ++.-+..+. +.+-.-.+.|
T Consensus 125 aI~R~dpkt~evt~f~lp~~~a~~nlet~vfD~~G~lWFt~q~G~----yGrLdPa---~~~i~vfpa--PqG~gpyGi~ 195 (353)
T COG4257 125 AIGRLDPKTLEVTRFPLPLEHADANLETAVFDPWGNLWFTGQIGA----YGRLDPA---RNVISVFPA--PQGGGPYGIC 195 (353)
T ss_pred eeEEecCcccceEEeecccccCCCcccceeeCCCccEEEeecccc----ceecCcc---cCceeeecc--CCCCCCcceE
Confidence 46788999988876654322 2223455666799999884320 0134555 333222221 1222223577
Q ss_pred EecCCcEEEEc--Ccc-----C--CeEEEEeCCCCCCCeeeeccccccCCCCCCCCccceEEEecCCcEEEE--EcCeeE
Q 048017 187 ILPDNRIIVVG--GRR-----V--FTYEFYPKIDSLSSSLYLRFLIETRDPGEENNLYPFLHLLPDGNLFIF--ANRRSI 255 (566)
Q Consensus 187 ~L~dG~VyvvG--G~~-----~--~s~E~yP~~~~~~~w~~~p~l~~~~d~~~~~~~yp~~~~l~~G~Ifv~--Gg~~~e 255 (566)
+-+||.|+... |.- . ...|++|.-+ -+++ + --..+.-+-|++.+. |+-...
T Consensus 196 atpdGsvwyaslagnaiaridp~~~~aev~p~P~---------~~~~--g-------sRriwsdpig~~wittwg~g~l~ 257 (353)
T COG4257 196 ATPDGSVWYASLAGNAIARIDPFAGHAEVVPQPN---------ALKA--G-------SRRIWSDPIGRAWITTWGTGSLH 257 (353)
T ss_pred ECCCCcEEEEeccccceEEcccccCCcceecCCC---------cccc--c-------ccccccCccCcEEEeccCCceee
Confidence 88899999873 321 0 1234442111 0010 0 002334456777664 444678
Q ss_pred EEeccCCeEEEeecccCCCCCCcc
Q 048017 256 LFDYINNKLVKEFPVIPGNDKRNY 279 (566)
Q Consensus 256 ~yDp~t~~W~~~~p~lp~~~~r~~ 279 (566)
+|||.+.+|. +.| ||...+|-|
T Consensus 258 rfdPs~~sW~-eyp-LPgs~arpy 279 (353)
T COG4257 258 RFDPSVTSWI-EYP-LPGSKARPY 279 (353)
T ss_pred EeCcccccce-eee-CCCCCCCcc
Confidence 9999999997 564 787656665
No 78
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=78.38 E-value=52 Score=33.07 Aligned_cols=55 Identities=29% Similarity=0.482 Sum_probs=34.6
Q ss_pred EEEecCCcEEEEE-cCeeEEEeccCCeEEEeecccCCCCCCccCCCCceeeecccccCCCCCCCCCCCCCCEEEEEcCCC
Q 048017 238 LHLLPDGNLFIFA-NRRSILFDYINNKLVKEFPVIPGNDKRNYPSTGSSILLPVKLSAGSDGNGTAALPDAEVMVCGGAP 316 (566)
Q Consensus 238 ~~~l~~G~Ifv~G-g~~~e~yDp~t~~W~~~~p~lp~~~~r~~~~~g~avllpl~~~~~~~~~~y~~~~~gkI~v~GG~~ 316 (566)
+-+..+|+|..+. |.++..+|+++-.-.+.. .||-. ..++.|-| +-.+|||||.+
T Consensus 190 lEvs~dG~ilTia~gssV~Fwdaksf~~lKs~-k~P~n-------V~SASL~P----------------~k~~fVaGged 245 (334)
T KOG0278|consen 190 LEVSQDGRILTIAYGSSVKFWDAKSFGLLKSY-KMPCN-------VESASLHP----------------KKEFFVAGGED 245 (334)
T ss_pred eeeccCCCEEEEecCceeEEeccccccceeec-cCccc-------cccccccC----------------CCceEEecCcc
Confidence 3456799999876 456777888875544322 34432 12344433 55899999976
No 79
>PF03089 RAG2: Recombination activating protein 2; InterPro: IPR004321 The variable portion of the genes encoding immunoglobulins and T cell receptors are assembled from component V, D, and J DNA segments by a site-specific recombination reaction termed V(D)J recombination. V(D)J recombination is targeted to specific sites on the chromosome by recombination signal sequences (RSSs) that flank antigen receptor gene segments. The RSS consists of a conserved heptamer (consensus, 5'-CACAGTG-3') and nonamer (consensus, 5'-ACAAAAACC-3') separated by a spacer of either 12 or 23 bp. Efficient recombination occurs between a 12-RSS and a 23-RSS, a restriction known as the 12/23 rule. V(D)J recombination can be divided into two phases, DNA cleavage and DNA joining. DNA cleavage requires two lymphocyte-specific factors, the products of the recombination activating genes, RAG1 and RAG2, which together recognise the RSSs and create double strand breaks at the RSS-coding segment junctions []. RAG-mediated DNA cleavage occurs in a synaptic complex termed the paired complex, which is constituted from two distinct RSS-RAG complexes, a 12-SC and a 23-SC (where SC stands for signal complex). The DNA cleavage reaction involves two distinct enzymatic steps, initial nicking that creates a 3'-OH between a coding segment and its RSS, followed by hairpin formation in which the newly created 3'-OH attacks a phosphodiester bond on the opposite DNA strand. This generates a blunt, 5' phosphorylated signal end containing all of the RSS elements, and a covalently sealed hairpin coding end. The second phase of V(D)J recombination, in which broken DNA fragments are processed and joined, is less well characterised. Signal ends are typically joined precisely to form a signal joint, whereas joining of the coding ends requires the hairpin structure to be opened and typically involves nucleotide addition and deletion before formation of the coding joint. The factors involved in these processes include ubiquitously expressed proteins involved in the repair of DNA double strand breaks by nonhomologous end joining, terminal deoxynucleotidyl transferase, and Artemis protein. In addition to their critical roles in RSS recognition and DNA cleavage, the RAG proteins may perform two distinct types of functions in the postcleavage phase of V(D)J. A structural function has been inferred from the finding that, after DNA cleavage in vitro, the DNA ends remain associated with the RAG proteins in a "four end" complex known as the cleaved signal complex. After release of the coding ends in vitro, and after coding joint formation in vivo, the RAG proteins remain in a stable signal end complex (SEC) containing the two signal ends. These postcleavage complexes may serve as essential scaffolds for the second phase of the reaction, with the RAG proteins acting to organise the DNA processing and joining events. The second type of RAG protein-mediated postcleavage activity is the catalysis of phosphodiester bond hydrolysis and strand transfer reactions. The RAG proteins are capable of opening hairpin coding ends in vitro. The RAG proteins also show 3' flap endonuclease activity that may contribute to coding end processing/joining and can utilise the 3' OH group on the signal ends to attack hairpin coding ends (forming hybrid or open/shut joints) or virtually any DNA duplex (forming a transposition product).; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005634 nucleus
Probab=78.22 E-value=51 Score=33.72 Aligned_cols=100 Identities=15% Similarity=0.185 Sum_probs=51.3
Q ss_pred CCEEEEEcCCCCCccccccccccccccCCeeEE--EEeeCCCCCeEEeccCCCcccceeEEccC--CeEEEEcCCCCCCC
Q 048017 306 DAEVMVCGGAPAGAFIKSDKESVYVEASRTCGR--LKVTDKYPVWSMEFMPMPRVMSDMLLLPS--GDVIIINGASNGTA 381 (566)
Q Consensus 306 ~gkI~v~GG~~~~~~~~~~~~~~~~pa~~s~~~--~d~~~~~~~W~~~~M~~~R~~~~~vvLpd--G~V~vvGG~~~g~~ 381 (566)
++.||++||..-.... ......+ +|+...++.-+-.-+...-....+++.+- .+.+|+||......
T Consensus 164 ~D~VYilGGHsl~sd~----------Rpp~l~rlkVdLllGSP~vsC~vl~~glSisSAIvt~~~~~e~iIlGGY~sdsQ 233 (337)
T PF03089_consen 164 NDCVYILGGHSLESDS----------RPPRLYRLKVDLLLGSPAVSCTVLQGGLSISSAIVTQTGPHEYIILGGYQSDSQ 233 (337)
T ss_pred CceEEEEccEEccCCC----------CCCcEEEEEEeecCCCceeEEEECCCCceEeeeeEeecCCCceEEEecccccce
Confidence 7899999997522110 0112333 34333234333334555555555555433 46788899864322
Q ss_pred CCccc-----------cCc--CCcEEeccCCCCCCcceeEEEEcCCCcEEE
Q 048017 382 GWEDA-----------EEP--DRRFVVLNPSKIPRMYHSSAVVLPDGRILV 419 (566)
Q Consensus 382 ~~~~~-----------ydP--t~~Wt~~~~~~~~R~yhs~a~LlpdG~V~v 419 (566)
-..+| ..| .-+|+ ......|...+..+ -.|.+++
T Consensus 234 KRm~C~~V~Ldd~~I~ie~~E~P~Wt--~dI~hSrtWFGgs~--G~G~~Li 280 (337)
T PF03089_consen 234 KRMECNTVSLDDDGIHIEEREPPEWT--GDIKHSRTWFGGSM--GKGSALI 280 (337)
T ss_pred eeeeeeEEEEeCCceEeccCCCCCCC--CCcCcCcccccccc--CCceEEE
Confidence 11111 223 66776 35666676665543 3666654
No 80
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=77.52 E-value=1e+02 Score=33.24 Aligned_cols=122 Identities=14% Similarity=0.096 Sum_probs=63.7
Q ss_pred EEECCCCcEEeCcCCCcccccCCeecCCCcEEEEcCCCCCCCeEEEEcCCCCCCC-----cccccCcccccccC-cceEE
Q 048017 113 LYDIASNTFRPLLLQTDTWCSSGAVLSDGTLVQTGGYNVGDRVIRLFTPCNDEGC-----DWVELSKNLWDRRW-YASNQ 186 (566)
Q Consensus 113 ~yDp~t~~w~~l~~~~~~~c~~~~~l~dG~l~vvGG~~~g~~~v~~ydP~~~~t~-----~W~~~~~~M~~~R~-y~s~~ 186 (566)
.+|.-...|+++.......-.+.....||.++++|... .+..-+-. .. +|.+.+ ++..+. ..++.
T Consensus 264 s~d~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g~~G----~l~~S~d~---G~~~~~~~f~~~~--~~~~~~~l~~v~ 334 (398)
T PLN00033 264 TWEPGQPYWQPHNRASARRIQNMGWRADGGLWLLTRGG----GLYVSKGT---GLTEEDFDFEEAD--IKSRGFGILDVG 334 (398)
T ss_pred ecCCCCcceEEecCCCccceeeeeEcCCCCEEEEeCCc----eEEEecCC---CCcccccceeecc--cCCCCcceEEEE
Confidence 34555555888876555444555667899999988542 11111111 23 344432 222222 33445
Q ss_pred EecCCcEEEEcCccCCeEEEE-eCCCCCCCeeeeccccccCCCCCCCCccceEEEecCCcEEEEEcCee
Q 048017 187 ILPDNRIIVVGGRRVFTYEFY-PKIDSLSSSLYLRFLIETRDPGEENNLYPFLHLLPDGNLFIFANRRS 254 (566)
Q Consensus 187 ~L~dG~VyvvGG~~~~s~E~y-P~~~~~~~w~~~p~l~~~~d~~~~~~~yp~~~~l~~G~Ifv~Gg~~~ 254 (566)
...|+.++++|.... ++ ... ....|...+...+ .+.++| .+.-..+++.|+.|.+.+
T Consensus 335 ~~~d~~~~a~G~~G~----v~~s~D-~G~tW~~~~~~~~-----~~~~ly-~v~f~~~~~g~~~G~~G~ 392 (398)
T PLN00033 335 YRSKKEAWAAGGSGI----LLRSTD-GGKSWKRDKGADN-----IAANLY-SVKFFDDKKGFVLGNDGV 392 (398)
T ss_pred EcCCCcEEEEECCCc----EEEeCC-CCcceeEccccCC-----CCccee-EEEEcCCCceEEEeCCcE
Confidence 566889998887531 22 222 1346764332111 123566 222245688998887643
No 81
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=75.99 E-value=88 Score=32.98 Aligned_cols=132 Identities=17% Similarity=0.265 Sum_probs=73.9
Q ss_pred EEEEECCCCcEEeCcCCCcccccCCeecCCCcEEEEcCCCCCCCeEEEEcCCCCCCCcccccCc--ccccccCcceEEEe
Q 048017 111 SVLYDIASNTFRPLLLQTDTWCSSGAVLSDGTLVQTGGYNVGDRVIRLFTPCNDEGCDWVELSK--NLWDRRWYASNQIL 188 (566)
Q Consensus 111 ~~~yDp~t~~w~~l~~~~~~~c~~~~~l~dG~l~vvGG~~~g~~~v~~ydP~~~~t~~W~~~~~--~M~~~R~y~s~~~L 188 (566)
+.+||..++.|--.-.-+.-.--...+-.||.++++|+.. ..+.+|.-.+. ..+|.-... .|..-+|-|
T Consensus 88 AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdms---G~v~v~~~stg-~~~~~~~~e~~dieWl~WHp----- 158 (399)
T KOG0296|consen 88 AFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMS---GKVLVFKVSTG-GEQWKLDQEVEDIEWLKWHP----- 158 (399)
T ss_pred EEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCC---ccEEEEEcccC-ceEEEeecccCceEEEEecc-----
Confidence 6789999988654322221111113345699999999975 45677776532 456764321 266667765
Q ss_pred cCCcEEEEcCccCCeEEEE--eCCCCCCCeeeeccccccCCCCCCCCccceEEEecCCcEEEEEcC--eeEEEeccCCeE
Q 048017 189 PDNRIIVVGGRRVFTYEFY--PKIDSLSSSLYLRFLIETRDPGEENNLYPFLHLLPDGNLFIFANR--RSILFDYINNKL 264 (566)
Q Consensus 189 ~dG~VyvvGG~~~~s~E~y--P~~~~~~~w~~~p~l~~~~d~~~~~~~yp~~~~l~~G~Ifv~Gg~--~~e~yDp~t~~W 264 (566)
-+.|+..|-.+ .++.+| |... .-..++--... --..-.+|+||..+.|-. ...+|||++.+-
T Consensus 159 -~a~illAG~~D-GsvWmw~ip~~~---~~kv~~Gh~~~---------ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p 224 (399)
T KOG0296|consen 159 -RAHILLAGSTD-GSVWMWQIPSQA---LCKVMSGHNSP---------CTCGEFIPDGKRILTGYDDGTIIVWNPKTGQP 224 (399)
T ss_pred -cccEEEeecCC-CcEEEEECCCcc---eeeEecCCCCC---------cccccccCCCceEEEEecCceEEEEecCCCce
Confidence 35666666544 455666 5421 11122211000 011235789998877754 467899999864
Q ss_pred E
Q 048017 265 V 265 (566)
Q Consensus 265 ~ 265 (566)
.
T Consensus 225 ~ 225 (399)
T KOG0296|consen 225 L 225 (399)
T ss_pred e
Confidence 4
No 82
>PTZ00421 coronin; Provisional
Probab=74.95 E-value=1.4e+02 Score=33.23 Aligned_cols=50 Identities=14% Similarity=0.159 Sum_probs=31.3
Q ss_pred eEEEEECCCCcEEeCcCCCcccccCCeecCCCcEEEEcCCCCCCCeEEEEcCC
Q 048017 110 HSVLYDIASNTFRPLLLQTDTWCSSGAVLSDGTLVQTGGYNVGDRVIRLFTPC 162 (566)
Q Consensus 110 ~~~~yDp~t~~w~~l~~~~~~~c~~~~~l~dG~l~vvGG~~~g~~~v~~ydP~ 162 (566)
.+.+||..+++-...-..+.....+...-+||.++++|+.+ +.+++||+.
T Consensus 149 tVrIWDl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~D---g~IrIwD~r 198 (493)
T PTZ00421 149 VVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKD---KKLNIIDPR 198 (493)
T ss_pred EEEEEECCCCeEEEEEcCCCCceEEEEEECCCCEEEEecCC---CEEEEEECC
Confidence 47788888765332111111122223445689999999864 679999998
No 83
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=73.89 E-value=82 Score=29.80 Aligned_cols=134 Identities=16% Similarity=0.246 Sum_probs=61.8
Q ss_pred EEEEECCCCcEEeCcCCCcccccCCeecCCCcEEEEcCCCCCCCeEEEEcCCCCCCCcccccCcccc-cccCcceEEEec
Q 048017 111 SVLYDIASNTFRPLLLQTDTWCSSGAVLSDGTLVQTGGYNVGDRVIRLFTPCNDEGCDWVELSKNLW-DRRWYASNQILP 189 (566)
Q Consensus 111 ~~~yDp~t~~w~~l~~~~~~~c~~~~~l~dG~l~vvGG~~~g~~~v~~ydP~~~~t~~W~~~~~~M~-~~R~y~s~~~L~ 189 (566)
+.+||..+++....-..+...........+++++++|+.. ..+.+||.. +.+-.. . +. ....-.+....+
T Consensus 75 i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~---~~i~~~~~~---~~~~~~--~-~~~~~~~i~~~~~~~ 145 (289)
T cd00200 75 IRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRD---KTIKVWDVE---TGKCLT--T-LRGHTDWVNSVAFSP 145 (289)
T ss_pred EEEEEcCcccceEEEeccCCcEEEEEEcCCCCEEEEecCC---CeEEEEECC---CcEEEE--E-eccCCCcEEEEEEcC
Confidence 6678877643221111111112223344567888887732 568889886 322111 1 22 111222344444
Q ss_pred CCcEEEEcCccCCeEEEE-eCCCCCCCeeeeccccccCCCCCCCCccceEEEecCCcEEEEEcC--eeEEEeccCCeEE
Q 048017 190 DNRIIVVGGRRVFTYEFY-PKIDSLSSSLYLRFLIETRDPGEENNLYPFLHLLPDGNLFIFANR--RSILFDYINNKLV 265 (566)
Q Consensus 190 dG~VyvvGG~~~~s~E~y-P~~~~~~~w~~~p~l~~~~d~~~~~~~yp~~~~l~~G~Ifv~Gg~--~~e~yDp~t~~W~ 265 (566)
++++++.|..+ ..+.+| .... ......... . ..--.+...++++.+++++. ...+||..+.+..
T Consensus 146 ~~~~l~~~~~~-~~i~i~d~~~~--~~~~~~~~~-~--------~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~ 212 (289)
T cd00200 146 DGTFVASSSQD-GTIKLWDLRTG--KCVATLTGH-T--------GEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCL 212 (289)
T ss_pred cCCEEEEEcCC-CcEEEEEcccc--ccceeEecC-c--------cccceEEECCCcCEEEEecCCCcEEEEECCCCcee
Confidence 56766666533 345555 3221 011111100 0 00112334567766666653 4678898876544
No 84
>PLN00181 protein SPA1-RELATED; Provisional
Probab=73.86 E-value=1.9e+02 Score=34.04 Aligned_cols=25 Identities=28% Similarity=0.383 Sum_probs=18.8
Q ss_pred CeecCCCcEEEEcCCCCCCCeEEEEcCC
Q 048017 135 GAVLSDGTLVQTGGYNVGDRVIRLFTPC 162 (566)
Q Consensus 135 ~~~l~dG~l~vvGG~~~g~~~v~~ydP~ 162 (566)
..+-+||+++++||.+ ..+.+||..
T Consensus 489 i~fs~dg~~latgg~D---~~I~iwd~~ 513 (793)
T PLN00181 489 IGFDRDGEFFATAGVN---KKIKIFECE 513 (793)
T ss_pred EEECCCCCEEEEEeCC---CEEEEEECC
Confidence 3455799999999964 578888864
No 85
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=70.83 E-value=1.3e+02 Score=30.91 Aligned_cols=206 Identities=14% Similarity=0.145 Sum_probs=99.0
Q ss_pred eEEEEECCCCcEEe---Cc---CCCcccccCCeecCCCcEEEEcCCCCCCCeEEEEcCCCCCCCcccccCcccccccC--
Q 048017 110 HSVLYDIASNTFRP---LL---LQTDTWCSSGAVLSDGTLVQTGGYNVGDRVIRLFTPCNDEGCDWVELSKNLWDRRW-- 181 (566)
Q Consensus 110 ~~~~yDp~t~~w~~---l~---~~~~~~c~~~~~l~dG~l~vvGG~~~g~~~v~~ydP~~~~t~~W~~~~~~M~~~R~-- 181 (566)
...+|+..+..-+- +. ..+.-+-+...++.|+.|+-..|. .++..+|-. +.+=+.. .. +..
T Consensus 120 ~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~~ilT~SGD----~TCalWDie---~g~~~~~---f~-GH~gD 188 (343)
T KOG0286|consen 120 KCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDNHILTGSGD----MTCALWDIE---TGQQTQV---FH-GHTGD 188 (343)
T ss_pred eeEEEecccccccccceeeeeecCccceeEEEEEcCCCceEecCCC----ceEEEEEcc---cceEEEE---ec-CCccc
Confidence 46788887653321 11 123334344566767777776664 456667765 3221110 00 000
Q ss_pred cceEEEec-CCcEEEEcCccCCeEEEEeCCCCCCCeeeeccccccCCCCCCCCccceEEEecCCcEEEEEcCe--eEEEe
Q 048017 182 YASNQILP-DNRIIVVGGRRVFTYEFYPKIDSLSSSLYLRFLIETRDPGEENNLYPFLHLLPDGNLFIFANRR--SILFD 258 (566)
Q Consensus 182 y~s~~~L~-dG~VyvvGG~~~~s~E~yP~~~~~~~w~~~p~l~~~~d~~~~~~~yp~~~~l~~G~Ifv~Gg~~--~e~yD 258 (566)
-.+....+ +++-||.||.+.. ..+|.... ..- ...|.-...|. | .+.-.|+|.-|+.|..+ +.+||
T Consensus 189 V~slsl~p~~~ntFvSg~cD~~-aklWD~R~--~~c-~qtF~ghesDI----N---sv~ffP~G~afatGSDD~tcRlyD 257 (343)
T KOG0286|consen 189 VMSLSLSPSDGNTFVSGGCDKS-AKLWDVRS--GQC-VQTFEGHESDI----N---SVRFFPSGDAFATGSDDATCRLYD 257 (343)
T ss_pred EEEEecCCCCCCeEEecccccc-eeeeeccC--cce-eEeeccccccc----c---eEEEccCCCeeeecCCCceeEEEe
Confidence 11222334 8999999998742 22331110 011 11111111121 0 12234789999888754 67899
Q ss_pred ccCCeEEEeecccCCCCCCccCCCCceeeecccccCCCCCCCCCCCCCCEEEEEcCCCCCccccccccccccccCCeeEE
Q 048017 259 YINNKLVKEFPVIPGNDKRNYPSTGSSILLPVKLSAGSDGNGTAALPDAEVMVCGGAPAGAFIKSDKESVYVEASRTCGR 338 (566)
Q Consensus 259 p~t~~W~~~~p~lp~~~~r~~~~~g~avllpl~~~~~~~~~~y~~~~~gkI~v~GG~~~~~~~~~~~~~~~~pa~~s~~~ 338 (566)
.+.++-..... +. .-..+. .++.+. ..|+++.+|..+ .+|+.
T Consensus 258 lRaD~~~a~ys--~~--~~~~gi--tSv~FS---------------~SGRlLfagy~d-----------------~~c~v 299 (343)
T KOG0286|consen 258 LRADQELAVYS--HD--SIICGI--TSVAFS---------------KSGRLLFAGYDD-----------------FTCNV 299 (343)
T ss_pred ecCCcEEeeec--cC--cccCCc--eeEEEc---------------ccccEEEeeecC-----------------CceeE
Confidence 99987553332 11 122221 233332 179999998643 23555
Q ss_pred EEeeCCCCCeEEeccCCCcccceeEEccCCeEEEEcCCC
Q 048017 339 LKVTDKYPVWSMEFMPMPRVMSDMLLLPSGDVIIINGAS 377 (566)
Q Consensus 339 ~d~~~~~~~W~~~~M~~~R~~~~~vvLpdG~V~vvGG~~ 377 (566)
.|.-. ...-....-+.-|...- -+-|||.-+..|-.+
T Consensus 300 WDtlk-~e~vg~L~GHeNRvScl-~~s~DG~av~TgSWD 336 (343)
T KOG0286|consen 300 WDTLK-GERVGVLAGHENRVSCL-GVSPDGMAVATGSWD 336 (343)
T ss_pred eeccc-cceEEEeeccCCeeEEE-EECCCCcEEEecchh
Confidence 55321 00000113345565433 355788877766543
No 86
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=70.06 E-value=54 Score=32.94 Aligned_cols=93 Identities=20% Similarity=0.223 Sum_probs=52.1
Q ss_pred CCeEEEEcCCCCCCCcccccCcccccccCcceEEEecCCcEEEEcCccCCeEEEE-eCCCCCCCeeeeccccccCCCCCC
Q 048017 153 DRVIRLFTPCNDEGCDWVELSKNLWDRRWYASNQILPDNRIIVVGGRRVFTYEFY-PKIDSLSSSLYLRFLIETRDPGEE 231 (566)
Q Consensus 153 ~~~v~~ydP~~~~t~~W~~~~~~M~~~R~y~s~~~L~dG~VyvvGG~~~~s~E~y-P~~~~~~~w~~~p~l~~~~d~~~~ 231 (566)
.+.|+++|-. +.+= +.. |..+.---++.+-+||+|+.+-= +.++-+| ++.-..-+-..+|....
T Consensus 164 d~tVRLWD~r---Tgt~--v~s-L~~~s~VtSlEvs~dG~ilTia~--gssV~Fwdaksf~~lKs~k~P~nV~------- 228 (334)
T KOG0278|consen 164 DKTVRLWDHR---TGTE--VQS-LEFNSPVTSLEVSQDGRILTIAY--GSSVKFWDAKSFGLLKSYKMPCNVE------- 228 (334)
T ss_pred CCceEEEEec---cCcE--EEE-EecCCCCcceeeccCCCEEEEec--CceeEEeccccccceeeccCccccc-------
Confidence 3678888877 4442 222 44444334566667999998742 2245555 43210001112332111
Q ss_pred CCccceEEEecCCcEEEEEcCeeE--EEeccCCeEE
Q 048017 232 NNLYPFLHLLPDGNLFIFANRRSI--LFDYINNKLV 265 (566)
Q Consensus 232 ~~~yp~~~~l~~G~Ifv~Gg~~~e--~yDp~t~~W~ 265 (566)
.+.+-|+-.+||.||.+.+ .||..++.-.
T Consensus 229 -----SASL~P~k~~fVaGged~~~~kfDy~TgeEi 259 (334)
T KOG0278|consen 229 -----SASLHPKKEFFVAGGEDFKVYKFDYNTGEEI 259 (334)
T ss_pred -----cccccCCCceEEecCcceEEEEEeccCCcee
Confidence 2346678899999998754 5788887643
No 87
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=69.60 E-value=37 Score=34.82 Aligned_cols=98 Identities=15% Similarity=0.282 Sum_probs=57.8
Q ss_pred CCceEEccCCCccce-eEEEEe-eCCeEEEEeccCCCCCCCCCCCCccccCCCCCCCcccceEEEEECCCCcEEeCcCCC
Q 048017 51 GGQWVLLQSSIGISA-MHMQVL-NNDKVIIFDRTDMGPSNLSLPIDKCRKEGDVGQLDCTAHSVLYDIASNTFRPLLLQT 128 (566)
Q Consensus 51 ~g~W~~l~~~~~~~a-~h~~~l-~~gkV~~~gg~~~~~s~~~~p~G~~~~~~~~~~~~~~~~~~~yDp~t~~w~~l~~~~ 128 (566)
..+|..+... +.. ++.... .+++||+.|-...+.. .......||.++++|..+....
T Consensus 25 ~~qW~~~g~~--i~G~V~~l~~~~~~~Llv~G~ft~~~~-------------------~~~~la~yd~~~~~w~~~~~~~ 83 (281)
T PF12768_consen 25 NSQWSSPGNG--ISGTVTDLQWASNNQLLVGGNFTLNGT-------------------NSSNLATYDFKNQTWSSLGGGS 83 (281)
T ss_pred CCEeecCCCC--ceEEEEEEEEecCCEEEEEEeeEECCC-------------------CceeEEEEecCCCeeeecCCcc
Confidence 5799998643 332 344443 3677777775542110 1235789999999999887622
Q ss_pred -----cccccCCeecCCC-cEEEEcCCCCCCCeEEEEcCCCCCCCcccccCc
Q 048017 129 -----DTWCSSGAVLSDG-TLVQTGGYNVGDRVIRLFTPCNDEGCDWVELSK 174 (566)
Q Consensus 129 -----~~~c~~~~~l~dG-~l~vvGG~~~g~~~v~~ydP~~~~t~~W~~~~~ 174 (566)
.+.-.......|+ ++++.|....+...+..|| ..+|..+..
T Consensus 84 s~~ipgpv~a~~~~~~d~~~~~~aG~~~~g~~~l~~~d-----Gs~W~~i~~ 130 (281)
T PF12768_consen 84 SNSIPGPVTALTFISNDGSNFWVAGRSANGSTFLMKYD-----GSSWSSIGS 130 (281)
T ss_pred cccCCCcEEEEEeeccCCceEEEeceecCCCceEEEEc-----CCceEeccc
Confidence 1111111112244 5777776555667788886 457987654
No 88
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=69.28 E-value=1.1e+02 Score=31.13 Aligned_cols=137 Identities=17% Similarity=0.247 Sum_probs=70.5
Q ss_pred eEEEEECCCCcEEeCcCCCcccccCCeecCCCcEEEEcCCCCCCCeEEEEcCCCCCCCcccccCcccccccCcceEEEec
Q 048017 110 HSVLYDIASNTFRPLLLQTDTWCSSGAVLSDGTLVQTGGYNVGDRVIRLFTPCNDEGCDWVELSKNLWDRRWYASNQILP 189 (566)
Q Consensus 110 ~~~~yDp~t~~w~~l~~~~~~~c~~~~~l~dG~l~vvGG~~~g~~~v~~ydP~~~~t~~W~~~~~~M~~~R~y~s~~~L~ 189 (566)
...+||.++++-+..-.-+.+---+.++-+|.+-++.|-.+ +++..||-.. .++.+.... |. .-|-.++...|
T Consensus 86 ~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrD---kTiklwnt~g--~ck~t~~~~-~~-~~WVscvrfsP 158 (315)
T KOG0279|consen 86 TLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRD---KTIKLWNTLG--VCKYTIHED-SH-REWVSCVRFSP 158 (315)
T ss_pred eEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCc---ceeeeeeecc--cEEEEEecC-CC-cCcEEEEEEcC
Confidence 36788888864333211111100123445678888877653 6788888763 344443332 33 34544444455
Q ss_pred CC-cEEEEcCccCCeEEEEeCCCCCCCeeeeccccccCCCCCCCCccceEEEecCCcEEEEEcCeeEE--EeccCCe
Q 048017 190 DN-RIIVVGGRRVFTYEFYPKIDSLSSSLYLRFLIETRDPGEENNLYPFLHLLPDGNLFIFANRRSIL--FDYINNK 263 (566)
Q Consensus 190 dG-~VyvvGG~~~~s~E~yP~~~~~~~w~~~p~l~~~~d~~~~~~~yp~~~~l~~G~Ifv~Gg~~~e~--yDp~t~~ 263 (566)
+. ..+++.+.+.+++.+|-..+ .....+.... ..+--.+.+.|||.+.+.||.+.+. +|....+
T Consensus 159 ~~~~p~Ivs~s~DktvKvWnl~~----~~l~~~~~gh------~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k 225 (315)
T KOG0279|consen 159 NESNPIIVSASWDKTVKVWNLRN----CQLRTTFIGH------SGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGK 225 (315)
T ss_pred CCCCcEEEEccCCceEEEEccCC----cchhhccccc------cccEEEEEECCCCCEEecCCCCceEEEEEccCCc
Confidence 42 45555555667777762111 1111111111 1122235677899999999987654 5555443
No 89
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=67.70 E-value=20 Score=37.87 Aligned_cols=51 Identities=24% Similarity=0.324 Sum_probs=34.6
Q ss_pred eEEEEECCCCcEEeCcCCCcccccCCeecCCCcEEEEcCCCCCCCeEEEEcCCC
Q 048017 110 HSVLYDIASNTFRPLLLQTDTWCSSGAVLSDGTLVQTGGYNVGDRVIRLFTPCN 163 (566)
Q Consensus 110 ~~~~yDp~t~~w~~l~~~~~~~c~~~~~l~dG~l~vvGG~~~g~~~v~~ydP~~ 163 (566)
.+.+||+.|.+=...-.-+..+--+.+-.+||+.++.|-.+ .+|++|||++
T Consensus 138 TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~d---g~I~lwdpkt 188 (480)
T KOG0271|consen 138 TVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKD---GSIRLWDPKT 188 (480)
T ss_pred eEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccC---CeEEEecCCC
Confidence 47899998864222222344444445667899999987653 5799999984
No 90
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=67.51 E-value=92 Score=29.90 Aligned_cols=137 Identities=18% Similarity=0.224 Sum_probs=69.4
Q ss_pred ecCCcEEEEE-cCeeEEEeccCCeEEEeecccCCCCCCccCCCCceeeecccccCCCCCCCCCCCCCCEEEEEcCCCCCc
Q 048017 241 LPDGNLFIFA-NRRSILFDYINNKLVKEFPVIPGNDKRNYPSTGSSILLPVKLSAGSDGNGTAALPDAEVMVCGGAPAGA 319 (566)
Q Consensus 241 l~~G~Ifv~G-g~~~e~yDp~t~~W~~~~p~lp~~~~r~~~~~g~avllpl~~~~~~~~~~y~~~~~gkI~v~GG~~~~~ 319 (566)
..+|++|+.. .....+||.++++...... ++. +.. ..-+. . +++||+....
T Consensus 34 ~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~-~~~---~~~---~~~~~--------------~---~~~v~v~~~~---- 85 (238)
T PF13360_consen 34 PDGGRVYVASGDGNLYALDAKTGKVLWRFD-LPG---PIS---GAPVV--------------D---GGRVYVGTSD---- 85 (238)
T ss_dssp EETTEEEEEETTSEEEEEETTTSEEEEEEE-CSS---CGG---SGEEE--------------E---TTEEEEEETT----
T ss_pred EeCCEEEEEcCCCEEEEEECCCCCEEEEee-ccc---ccc---ceeee--------------c---ccccccccce----
Confidence 3678888873 4567889998876442222 222 111 11111 0 7888876521
Q ss_pred cccccccccccccCCeeEEEEeeCCCCCeEE-e-ccCCCccccee-EEccCCeEEEEcCCCCCCCCCccccCc---CCcE
Q 048017 320 FIKSDKESVYVEASRTCGRLKVTDKYPVWSM-E-FMPMPRVMSDM-LLLPSGDVIIINGASNGTAGWEDAEEP---DRRF 393 (566)
Q Consensus 320 ~~~~~~~~~~~pa~~s~~~~d~~~~~~~W~~-~-~M~~~R~~~~~-vvLpdG~V~vvGG~~~g~~~~~~~ydP---t~~W 393 (566)
+.+..+|..+.+..|+. . ..+..+..... ..+-++++|+.. .. + ...++|+ ...|
T Consensus 86 --------------~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-g---~l~~~d~~tG~~~w 146 (238)
T PF13360_consen 86 --------------GSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGT-SS-G---KLVALDPKTGKLLW 146 (238)
T ss_dssp --------------SEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEE-TC-S---EEEEEETTTTEEEE
T ss_pred --------------eeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEe-cc-C---cEEEEecCCCcEEE
Confidence 24566776655678984 4 32332222222 222244454443 22 1 2456888 3457
Q ss_pred EeccCCCCC-C----cc-eeEEEEcCCCcEEEecCCC
Q 048017 394 VVLNPSKIP-R----MY-HSSAVVLPDGRILVGGSNP 424 (566)
Q Consensus 394 t~~~~~~~~-R----~y-hs~a~LlpdG~V~v~GG~~ 424 (566)
+.-...+.. - .. ....+++.+|+||+..+..
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g 183 (238)
T PF13360_consen 147 KYPVGEPRGSSPISSFSDINGSPVISDGRVYVSSGDG 183 (238)
T ss_dssp EEESSTT-SS--EEEETTEEEEEECCTTEEEEECCTS
T ss_pred EeecCCCCCCcceeeecccccceEEECCEEEEEcCCC
Confidence 763333221 0 11 1244556678999988754
No 91
>PTZ00420 coronin; Provisional
Probab=66.39 E-value=1.7e+02 Score=33.23 Aligned_cols=135 Identities=13% Similarity=0.117 Sum_probs=65.3
Q ss_pred eEEEEECCCCcEE-eCcCCCcccccCCeecCCCcEEEEcCCCCCCCeEEEEcCCCCCCCcccccCcccccccC-cceEE-
Q 048017 110 HSVLYDIASNTFR-PLLLQTDTWCSSGAVLSDGTLVQTGGYNVGDRVIRLFTPCNDEGCDWVELSKNLWDRRW-YASNQ- 186 (566)
Q Consensus 110 ~~~~yDp~t~~w~-~l~~~~~~~c~~~~~l~dG~l~vvGG~~~g~~~v~~ydP~~~~t~~W~~~~~~M~~~R~-y~s~~- 186 (566)
.+.+||..+.+-. .+. ......+...-++|.++++++.+ +.+++||+. +.+ .+.. +..... ..+.+
T Consensus 149 tIrIWDl~tg~~~~~i~--~~~~V~SlswspdG~lLat~s~D---~~IrIwD~R---sg~--~i~t-l~gH~g~~~s~~v 217 (568)
T PTZ00420 149 FVNIWDIENEKRAFQIN--MPKKLSSLKWNIKGNLLSGTCVG---KHMHIIDPR---KQE--IASS-FHIHDGGKNTKNI 217 (568)
T ss_pred eEEEEECCCCcEEEEEe--cCCcEEEEEECCCCCEEEEEecC---CEEEEEECC---CCc--EEEE-EecccCCceeEEE
Confidence 3678998877522 111 11112233445799999988753 579999998 432 2111 211110 01111
Q ss_pred Ee----cCCcEEEEcCccC---CeEEEE-eCCCCCCCeeeeccccccCCCCCCCCccceEEEecCCcEEEEEc--CeeEE
Q 048017 187 IL----PDNRIIVVGGRRV---FTYEFY-PKIDSLSSSLYLRFLIETRDPGEENNLYPFLHLLPDGNLFIFAN--RRSIL 256 (566)
Q Consensus 187 ~L----~dG~VyvvGG~~~---~s~E~y-P~~~~~~~w~~~p~l~~~~d~~~~~~~yp~~~~l~~G~Ifv~Gg--~~~e~ 256 (566)
.+ +|+..++.+|.+. ..+-+| .+.. ...... ...+. ....+.|+. --.+|.+|+.|. ....+
T Consensus 218 ~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~--~~pl~~----~~ld~-~~~~L~p~~-D~~tg~l~lsGkGD~tIr~ 289 (568)
T PTZ00420 218 WIDGLGGDDNYILSTGFSKNNMREMKLWDLKNT--TSALVT----MSIDN-ASAPLIPHY-DESTGLIYLIGKGDGNCRY 289 (568)
T ss_pred EeeeEcCCCCEEEEEEcCCCCccEEEEEECCCC--CCceEE----EEecC-CccceEEee-eCCCCCEEEEEECCCeEEE
Confidence 11 4667777766553 356677 3321 111110 00010 001112221 133688998884 45677
Q ss_pred EeccCCe
Q 048017 257 FDYINNK 263 (566)
Q Consensus 257 yDp~t~~ 263 (566)
|+...+.
T Consensus 290 ~e~~~~~ 296 (568)
T PTZ00420 290 YQHSLGS 296 (568)
T ss_pred EEccCCc
Confidence 8877664
No 92
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=64.61 E-value=2.1e+02 Score=30.89 Aligned_cols=69 Identities=12% Similarity=0.125 Sum_probs=37.5
Q ss_pred eEEeccCCCcc-cceeEEccCCeEEEEcCCCCCCCCCcccc-CcCCcEEeccC-CCC-CCcceeEEEEcCCCcEEEecCC
Q 048017 348 WSMEFMPMPRV-MSDMLLLPSGDVIIINGASNGTAGWEDAE-EPDRRFVVLNP-SKI-PRMYHSSAVVLPDGRILVGGSN 423 (566)
Q Consensus 348 W~~~~M~~~R~-~~~~vvLpdG~V~vvGG~~~g~~~~~~~y-dPt~~Wt~~~~-~~~-~R~yhs~a~LlpdG~V~v~GG~ 423 (566)
|...+++..+. ..+.+...|++++++|... . ...- |-+++|+.... -.+ .-.| + .....+++.|++|-+
T Consensus 318 f~~~~~~~~~~~l~~v~~~~d~~~~a~G~~G--~---v~~s~D~G~tW~~~~~~~~~~~~ly-~-v~f~~~~~g~~~G~~ 390 (398)
T PLN00033 318 FEEADIKSRGFGILDVGYRSKKEAWAAGGSG--I---LLRSTDGGKSWKRDKGADNIAANLY-S-VKFFDDKKGFVLGND 390 (398)
T ss_pred eeecccCCCCcceEEEEEcCCCcEEEEECCC--c---EEEeCCCCcceeEccccCCCCccee-E-EEEcCCCceEEEeCC
Confidence 34434443333 3344455688999888652 1 1111 22889998653 222 2334 2 222567899998854
No 93
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=61.25 E-value=39 Score=34.68 Aligned_cols=62 Identities=13% Similarity=0.143 Sum_probs=38.4
Q ss_pred ceEEEEECCCCcEEeCcCCCcccccCCeecCCCcEEEEcCCC--CC--CCeEEEEcCCCCCCCcccccCc
Q 048017 109 AHSVLYDIASNTFRPLLLQTDTWCSSGAVLSDGTLVQTGGYN--VG--DRVIRLFTPCNDEGCDWVELSK 174 (566)
Q Consensus 109 ~~~~~yDp~t~~w~~l~~~~~~~c~~~~~l~dG~l~vvGG~~--~g--~~~v~~ydP~~~~t~~W~~~~~ 174 (566)
..+..||+.+.+|..+...-.-- -......++.-+++||.. .+ ...+-.||.. +.+|+.+..
T Consensus 16 ~~lC~yd~~~~qW~~~g~~i~G~-V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~---~~~w~~~~~ 81 (281)
T PF12768_consen 16 PGLCLYDTDNSQWSSPGNGISGT-VTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFK---NQTWSSLGG 81 (281)
T ss_pred CEEEEEECCCCEeecCCCCceEE-EEEEEEecCCEEEEEEeeEECCCCceeEEEEecC---CCeeeecCC
Confidence 35789999999999886431110 112222345555555542 22 3567789999 889987654
No 94
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=58.24 E-value=1.7e+02 Score=27.89 Aligned_cols=143 Identities=11% Similarity=0.056 Sum_probs=65.3
Q ss_pred eEEEEECCCCc--EEeCcCCCcccccCCeecCCCcEEEEcCCCCCCCeEEEEcCCCCCCCccc-ccCcccccc-cCcceE
Q 048017 110 HSVLYDIASNT--FRPLLLQTDTWCSSGAVLSDGTLVQTGGYNVGDRVIRLFTPCNDEGCDWV-ELSKNLWDR-RWYASN 185 (566)
Q Consensus 110 ~~~~yDp~t~~--w~~l~~~~~~~c~~~~~l~dG~l~vvGG~~~g~~~v~~ydP~~~~t~~W~-~~~~~M~~~-R~y~s~ 185 (566)
...+||+.+++ |+.-. ....... ....+++||+.... ..+..+|..+. .-.|+ .... .+.. -.....
T Consensus 47 ~l~~~d~~tG~~~W~~~~--~~~~~~~-~~~~~~~v~v~~~~----~~l~~~d~~tG-~~~W~~~~~~-~~~~~~~~~~~ 117 (238)
T PF13360_consen 47 NLYALDAKTGKVLWRFDL--PGPISGA-PVVDGGRVYVGTSD----GSLYALDAKTG-KVLWSIYLTS-SPPAGVRSSSS 117 (238)
T ss_dssp EEEEEETTTSEEEEEEEC--SSCGGSG-EEEETTEEEEEETT----SEEEEEETTTS-CEEEEEEE-S-SCTCSTB--SE
T ss_pred EEEEEECCCCCEEEEeec--cccccce-eeecccccccccce----eeeEecccCCc-ceeeeecccc-ccccccccccC
Confidence 37789998887 44332 2222222 35567888877632 37899997632 45687 3322 1111 222333
Q ss_pred EEecCCcEEEEcCccCCeEEEE-eCCCCCCCeee-eccccccCCCCCCCCccceEEEecCCcEEEEEcCe-eEEEeccCC
Q 048017 186 QILPDNRIIVVGGRRVFTYEFY-PKIDSLSSSLY-LRFLIETRDPGEENNLYPFLHLLPDGNLFIFANRR-SILFDYINN 262 (566)
Q Consensus 186 ~~L~dG~VyvvGG~~~~s~E~y-P~~~~~~~w~~-~p~l~~~~d~~~~~~~yp~~~~l~~G~Ifv~Gg~~-~e~yDp~t~ 262 (566)
..+.++++|+.. ..+ .+-.+ +++. ...|.. .......... .....-....+..+|+||+..+.. ...+|.+++
T Consensus 118 ~~~~~~~~~~~~-~~g-~l~~~d~~tG-~~~w~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~~g~~~~~d~~tg 193 (238)
T PF13360_consen 118 PAVDGDRLYVGT-SSG-KLVALDPKTG-KLLWKYPVGEPRGSSPI-SSFSDINGSPVISDGRVYVSSGDGRVVAVDLATG 193 (238)
T ss_dssp EEEETTEEEEEE-TCS-EEEEEETTTT-EEEEEEESSTT-SS--E-EEETTEEEEEECCTTEEEEECCTSSEEEEETTTT
T ss_pred ceEecCEEEEEe-ccC-cEEEEecCCC-cEEEEeecCCCCCCcce-eeecccccceEEECCEEEEEcCCCeEEEEECCCC
Confidence 444244555443 221 22223 3332 112321 1110000000 000000122344468899887655 344599998
Q ss_pred e--EE
Q 048017 263 K--LV 265 (566)
Q Consensus 263 ~--W~ 265 (566)
+ |.
T Consensus 194 ~~~w~ 198 (238)
T PF13360_consen 194 EKLWS 198 (238)
T ss_dssp EEEEE
T ss_pred CEEEE
Confidence 7 64
No 95
>PLN00181 protein SPA1-RELATED; Provisional
Probab=57.73 E-value=3.8e+02 Score=31.57 Aligned_cols=87 Identities=13% Similarity=0.177 Sum_probs=45.7
Q ss_pred eEEEEECCCCcEEeCcCCCcccccCCeec-CCCcEEEEcCCCCCCCeEEEEcCCCCCCCcccccCcccccccCcceEEEe
Q 048017 110 HSVLYDIASNTFRPLLLQTDTWCSSGAVL-SDGTLVQTGGYNVGDRVIRLFTPCNDEGCDWVELSKNLWDRRWYASNQIL 188 (566)
Q Consensus 110 ~~~~yDp~t~~w~~l~~~~~~~c~~~~~l-~dG~l~vvGG~~~g~~~v~~ydP~~~~t~~W~~~~~~M~~~R~y~s~~~L 188 (566)
.+.+||..+++....-..+.....+.... .++.++++||.+ ..+++||.. +.. .... +.... ....+..
T Consensus 556 ~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~D---g~v~iWd~~---~~~--~~~~-~~~~~-~v~~v~~ 625 (793)
T PLN00181 556 VVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDD---GSVKLWSIN---QGV--SIGT-IKTKA-NICCVQF 625 (793)
T ss_pred eEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCC---CEEEEEECC---CCc--EEEE-EecCC-CeEEEEE
Confidence 46778887765432212222222222233 378899999864 578999976 322 1111 21111 1112222
Q ss_pred --cCCcEEEEcCccCCeEEEE
Q 048017 189 --PDNRIIVVGGRRVFTYEFY 207 (566)
Q Consensus 189 --~dG~VyvvGG~~~~s~E~y 207 (566)
.+|..+++|+.++ .+.+|
T Consensus 626 ~~~~g~~latgs~dg-~I~iw 645 (793)
T PLN00181 626 PSESGRSLAFGSADH-KVYYY 645 (793)
T ss_pred eCCCCCEEEEEeCCC-eEEEE
Confidence 3688999888664 45566
No 96
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=56.25 E-value=1.9e+02 Score=31.51 Aligned_cols=130 Identities=12% Similarity=0.091 Sum_probs=67.8
Q ss_pred eEEEEECCCCcEEeCcCCC---cccccCCeecCCCcEEEEcCCCCCCCeEEEEcCCCCCCCcccccCcccccccCcceEE
Q 048017 110 HSVLYDIASNTFRPLLLQT---DTWCSSGAVLSDGTLVQTGGYNVGDRVIRLFTPCNDEGCDWVELSKNLWDRRWYASNQ 186 (566)
Q Consensus 110 ~~~~yDp~t~~w~~l~~~~---~~~c~~~~~l~dG~l~vvGG~~~g~~~v~~ydP~~~~t~~W~~~~~~M~~~R~y~s~~ 186 (566)
....||..+.+.+.+..+. ..+-..-.+.+++..+++-|.. ..+.+..-. +..|...-. |. ++ -...+
T Consensus 281 y~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~---G~I~lLhak---T~eli~s~K-ie-G~-v~~~~ 351 (514)
T KOG2055|consen 281 YLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNN---GHIHLLHAK---TKELITSFK-IE-GV-VSDFT 351 (514)
T ss_pred EEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccC---ceEEeehhh---hhhhhheee-ec-cE-EeeEE
Confidence 4678999999998886542 2233333445678877777754 346666666 777764322 22 22 12233
Q ss_pred EecCCcEEEEcCccCCeEEEE-eCCC-CCCCeeeeccccccCCCCCCCCccc-eEEEecCCcEEEEEcCe--eEEEeccC
Q 048017 187 ILPDNRIIVVGGRRVFTYEFY-PKID-SLSSSLYLRFLIETRDPGEENNLYP-FLHLLPDGNLFIFANRR--SILFDYIN 261 (566)
Q Consensus 187 ~L~dG~VyvvGG~~~~s~E~y-P~~~-~~~~w~~~p~l~~~~d~~~~~~~yp-~~~~l~~G~Ifv~Gg~~--~e~yDp~t 261 (566)
.-+||+.+++-|..+ .+.+| -..+ -...|..-. ..+- ..+..++|.+|++|... +-+||-.+
T Consensus 352 fsSdsk~l~~~~~~G-eV~v~nl~~~~~~~rf~D~G------------~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s 418 (514)
T KOG2055|consen 352 FSSDSKELLASGGTG-EVYVWNLRQNSCLHRFVDDG------------SVHGTSLCISLNGSYLATGSDSGIVNIYDGNS 418 (514)
T ss_pred EecCCcEEEEEcCCc-eEEEEecCCcceEEEEeecC------------ccceeeeeecCCCceEEeccCcceEEEeccch
Confidence 336776555544333 22222 1111 000111111 1111 22334799999998865 56788655
No 97
>PF15418 DUF4625: Domain of unknown function (DUF4625)
Probab=54.55 E-value=1.1e+02 Score=27.68 Aligned_cols=91 Identities=14% Similarity=0.198 Sum_probs=47.5
Q ss_pred CCCceeec-----CCccceeecCCeEEEEEEecCCCCCcceEEEE-EccCccccCCCCCcc--eEEeeeeee-eec-c--
Q 048017 456 MRPSILSL-----ESIDRTVSYNEVFAVTFELSSYSPSGEISVSL-MTPSFTTHSFAMNQR--LVVLNVVSV-SQL-S-- 523 (566)
Q Consensus 456 ~RP~i~~~-----p~~~~~~~~g~~~~v~~~~~~~~~~~~~~v~l-~~~~~~THs~n~~QR--~v~L~~~~~-~~~-g-- 523 (566)
..|+|+.. |.....+..|+.|.|++...... .+.++.+ |..-|-.|+-...-+ ..+..|... ... |
T Consensus 13 ~~P~I~~~~~~~~p~~~~~~~~G~~ihfe~~i~d~~--~i~si~VeIH~nfd~H~h~~~~~~~~~~~~~~~~~~~~~g~~ 90 (132)
T PF15418_consen 13 EKPVITLNEIGAFPENCKVATRGDDIHFEADISDNS--AIKSIKVEIHNNFDHHTHSTEAGECEKPWVFEQDYDIYGGKK 90 (132)
T ss_pred CCCEEEeeecccCCCCCeEEecCCcEEEEEEEEccc--ceeEEEEEEecCcCcccccccccccccCcEEEEEEcccCCcc
Confidence 57888766 32235678899999998876432 4555544 122223333221100 111222110 001 1
Q ss_pred cceEEEEEEcCCCCCcCCCcceEEEEEc
Q 048017 524 VYAYKVVVNGPPTATVAPPGYYMMFVVH 551 (566)
Q Consensus 524 ~~~~~~~v~~P~~~~~~ppG~ymlfv~~ 551 (566)
.......+++|++ |+||-|-+++..
T Consensus 91 ~~~~h~~i~IPa~---a~~G~YH~~i~V 115 (132)
T PF15418_consen 91 NYDFHEHIDIPAD---APAGDYHFMITV 115 (132)
T ss_pred cEeEEEeeeCCCC---CCCcceEEEEEE
Confidence 1123455678988 899999777663
No 98
>PRK04792 tolB translocation protein TolB; Provisional
Probab=54.47 E-value=2.3e+02 Score=30.89 Aligned_cols=92 Identities=14% Similarity=0.111 Sum_probs=54.1
Q ss_pred ceEEEEECCCCcEEeCcCCCcccccCCeecCCCcEEEEcCCCCCCCeEEEEcCCCCCCCcccccCcccccccCcceEEEe
Q 048017 109 AHSVLYDIASNTFRPLLLQTDTWCSSGAVLSDGTLVQTGGYNVGDRVIRLFTPCNDEGCDWVELSKNLWDRRWYASNQIL 188 (566)
Q Consensus 109 ~~~~~yDp~t~~w~~l~~~~~~~c~~~~~l~dG~l~vvGG~~~g~~~v~~ydP~~~~t~~W~~~~~~M~~~R~y~s~~~L 188 (566)
....++|..+++.+.+..... ........+||+.+++....++...+..+|.. +.+++.+.. ...++.+...-
T Consensus 286 ~~Iy~~dl~tg~~~~lt~~~~-~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~---~g~~~~Lt~---~g~~~~~~~~S 358 (448)
T PRK04792 286 PEIYVVDIATKALTRITRHRA-IDTEPSWHPDGKSLIFTSERGGKPQIYRVNLA---SGKVSRLTF---EGEQNLGGSIT 358 (448)
T ss_pred eEEEEEECCCCCeEECccCCC-CccceEECCCCCEEEEEECCCCCceEEEEECC---CCCEEEEec---CCCCCcCeeEC
Confidence 356778999999888764321 12234456788866654433455678888987 667765431 23333344555
Q ss_pred cCCcEEEEcCccCCeEEEE
Q 048017 189 PDNRIIVVGGRRVFTYEFY 207 (566)
Q Consensus 189 ~dG~VyvvGG~~~~s~E~y 207 (566)
+||+.+++.........+|
T Consensus 359 pDG~~l~~~~~~~g~~~I~ 377 (448)
T PRK04792 359 PDGRSMIMVNRTNGKFNIA 377 (448)
T ss_pred CCCCEEEEEEecCCceEEE
Confidence 6887776655443333443
No 99
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=54.15 E-value=4.1e+02 Score=30.95 Aligned_cols=50 Identities=16% Similarity=0.248 Sum_probs=31.6
Q ss_pred eEEEEECCCCcEEeCcCCCcccccCCeecCCCcEEEEcCCCCCCCeEEEEcCC
Q 048017 110 HSVLYDIASNTFRPLLLQTDTWCSSGAVLSDGTLVQTGGYNVGDRVIRLFTPC 162 (566)
Q Consensus 110 ~~~~yDp~t~~w~~l~~~~~~~c~~~~~l~dG~l~vvGG~~~g~~~v~~ydP~ 162 (566)
...+|+-+++++.--..-+-.+-.+.+.-+||.++++|+.+ .+|.+||-.
T Consensus 331 QLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eD---gKVKvWn~~ 380 (893)
T KOG0291|consen 331 QLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAED---GKVKVWNTQ 380 (893)
T ss_pred eEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCC---CcEEEEecc
Confidence 45666666665543333232333345566899999999975 567888865
No 100
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=53.41 E-value=2.5e+02 Score=28.26 Aligned_cols=126 Identities=13% Similarity=0.167 Sum_probs=61.6
Q ss_pred EEEEECCCCcEEeCcCCCcccccCCee-cCCCcEEEEcCCCCCCCeEEEEcCCCCCCCcccccCc-----ccc---cccC
Q 048017 111 SVLYDIASNTFRPLLLQTDTWCSSGAV-LSDGTLVQTGGYNVGDRVIRLFTPCNDEGCDWVELSK-----NLW---DRRW 181 (566)
Q Consensus 111 ~~~yDp~t~~w~~l~~~~~~~c~~~~~-l~dG~l~vvGG~~~g~~~v~~ydP~~~~t~~W~~~~~-----~M~---~~R~ 181 (566)
..++|.++++.+..---+.-.-+..+. -.++.|+ .|+. + .+++++|-+ +.+-..+-. ++. ..||
T Consensus 138 ~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~qil-sG~E-D--GtvRvWd~k---t~k~v~~ie~yk~~~~lRp~~g~w 210 (325)
T KOG0649|consen 138 IYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQIL-SGAE-D--GTVRVWDTK---TQKHVSMIEPYKNPNLLRPDWGKW 210 (325)
T ss_pred EEEEEecCCEEEEEEcCCcceeeeeeecccCccee-ecCC-C--ccEEEEecc---ccceeEEeccccChhhcCcccCce
Confidence 567889999887653322222111111 1245554 3443 2 357778877 444332210 122 3455
Q ss_pred cceEEEecCCcEEEEcCccCCeEEEEeCCCCCCCeeeeccccccCCCCCCCCccceEEEecCCcEEEEE-cCeeEEEec
Q 048017 182 YASNQILPDNRIIVVGGRRVFTYEFYPKIDSLSSSLYLRFLIETRDPGEENNLYPFLHLLPDGNLFIFA-NRRSILFDY 259 (566)
Q Consensus 182 y~s~~~L~dG~VyvvGG~~~~s~E~yP~~~~~~~w~~~p~l~~~~d~~~~~~~yp~~~~l~~G~Ifv~G-g~~~e~yDp 259 (566)
-- +... |-.-+|.||....+..-.+... ...+.|+.... +.+...+..|++.| |+++..|..
T Consensus 211 ig-ala~-~edWlvCGgGp~lslwhLrsse---~t~vfpipa~v-----------~~v~F~~d~vl~~G~g~~v~~~~l 273 (325)
T KOG0649|consen 211 IG-ALAV-NEDWLVCGGGPKLSLWHLRSSE---STCVFPIPARV-----------HLVDFVDDCVLIGGEGNHVQSYTL 273 (325)
T ss_pred eE-EEec-cCceEEecCCCceeEEeccCCC---ceEEEecccce-----------eEeeeecceEEEeccccceeeeee
Confidence 43 3333 6788888886443322224321 23345543221 12233466777777 677766654
No 101
>PRK03629 tolB translocation protein TolB; Provisional
Probab=52.92 E-value=3.3e+02 Score=29.44 Aligned_cols=138 Identities=9% Similarity=0.076 Sum_probs=71.6
Q ss_pred eEEEEECCCCcEEeCcCCCcccccCCeecCCCcEEEEcCCCCCCCeEEEEcCCCCCCCcccccCcccccccCcceEEEec
Q 048017 110 HSVLYDIASNTFRPLLLQTDTWCSSGAVLSDGTLVQTGGYNVGDRVIRLFTPCNDEGCDWVELSKNLWDRRWYASNQILP 189 (566)
Q Consensus 110 ~~~~yDp~t~~w~~l~~~~~~~c~~~~~l~dG~l~vvGG~~~g~~~v~~ydP~~~~t~~W~~~~~~M~~~R~y~s~~~L~ 189 (566)
...++|..+++-+.+...... .......+||+.+++....++...+.++|.. +.+.+.+.. -.. ......--+
T Consensus 224 ~i~i~dl~~G~~~~l~~~~~~-~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~---tg~~~~lt~-~~~--~~~~~~wSP 296 (429)
T PRK03629 224 ALVIQTLANGAVRQVASFPRH-NGAPAFSPDGSKLAFALSKTGSLNLYVMDLA---SGQIRQVTD-GRS--NNTEPTWFP 296 (429)
T ss_pred EEEEEECCCCCeEEccCCCCC-cCCeEECCCCCEEEEEEcCCCCcEEEEEECC---CCCEEEccC-CCC--CcCceEECC
Confidence 467788888887776543221 2235677899866654333445678889987 555554432 110 112233456
Q ss_pred CCcEEEEcCccCCeEEEE--eCCCCCCCeeeeccccccCCCCCCCCccceEEEecCCcEEEEEcC-----eeEEEeccCC
Q 048017 190 DNRIIVVGGRRVFTYEFY--PKIDSLSSSLYLRFLIETRDPGEENNLYPFLHLLPDGNLFIFANR-----RSILFDYINN 262 (566)
Q Consensus 190 dG~VyvvGG~~~~s~E~y--P~~~~~~~w~~~p~l~~~~d~~~~~~~yp~~~~l~~G~Ifv~Gg~-----~~e~yDp~t~ 262 (566)
||+-++.........++| .... .....+... . .........+||+.+++... ...++|..++
T Consensus 297 DG~~I~f~s~~~g~~~Iy~~d~~~--g~~~~lt~~-~--------~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g 365 (429)
T PRK03629 297 DSQNLAYTSDQAGRPQVYKVNING--GAPQRITWE-G--------SQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATG 365 (429)
T ss_pred CCCEEEEEeCCCCCceEEEEECCC--CCeEEeecC-C--------CCccCEEECCCCCEEEEEEccCCCceEEEEECCCC
Confidence 887555443222223455 2221 111111110 0 01112335689987666432 3567898888
Q ss_pred eEE
Q 048017 263 KLV 265 (566)
Q Consensus 263 ~W~ 265 (566)
++.
T Consensus 366 ~~~ 368 (429)
T PRK03629 366 GVQ 368 (429)
T ss_pred CeE
Confidence 776
No 102
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=52.19 E-value=1.8e+02 Score=31.14 Aligned_cols=82 Identities=18% Similarity=0.179 Sum_probs=47.7
Q ss_pred ceEEEEECCCCcEE-eCcCCCcccccCCeecCCCcEEEEcCCCCCCCeEEEEcCCCCCCCcccccCcccc-cccCcceEE
Q 048017 109 AHSVLYDIASNTFR-PLLLQTDTWCSSGAVLSDGTLVQTGGYNVGDRVIRLFTPCNDEGCDWVELSKNLW-DRRWYASNQ 186 (566)
Q Consensus 109 ~~~~~yDp~t~~w~-~l~~~~~~~c~~~~~l~dG~l~vvGG~~~g~~~v~~ydP~~~~t~~W~~~~~~M~-~~R~y~s~~ 186 (566)
+.+.+||..|++-- .+. +.-.|.+..+-.||.++++.-. .+.++++||. +++-..-. |. .+---.-+.
T Consensus 154 n~v~iWnv~tgeali~l~--hpd~i~S~sfn~dGs~l~Ttck---DKkvRv~dpr---~~~~v~e~--~~heG~k~~Rai 223 (472)
T KOG0303|consen 154 NTVSIWNVGTGEALITLD--HPDMVYSMSFNRDGSLLCTTCK---DKKVRVIDPR---RGTVVSEG--VAHEGAKPARAI 223 (472)
T ss_pred ceEEEEeccCCceeeecC--CCCeEEEEEeccCCceeeeecc---cceeEEEcCC---CCcEeeec--ccccCCCcceeE
Confidence 45778888887632 222 2223333444457887777543 3789999999 44422111 11 111123467
Q ss_pred EecCCcEEEEcCcc
Q 048017 187 ILPDNRIIVVGGRR 200 (566)
Q Consensus 187 ~L~dG~VyvvGG~~ 200 (566)
-|.+|+|+..|-+.
T Consensus 224 fl~~g~i~tTGfsr 237 (472)
T KOG0303|consen 224 FLASGKIFTTGFSR 237 (472)
T ss_pred EeccCceeeecccc
Confidence 78899988887653
No 103
>PF03089 RAG2: Recombination activating protein 2; InterPro: IPR004321 The variable portion of the genes encoding immunoglobulins and T cell receptors are assembled from component V, D, and J DNA segments by a site-specific recombination reaction termed V(D)J recombination. V(D)J recombination is targeted to specific sites on the chromosome by recombination signal sequences (RSSs) that flank antigen receptor gene segments. The RSS consists of a conserved heptamer (consensus, 5'-CACAGTG-3') and nonamer (consensus, 5'-ACAAAAACC-3') separated by a spacer of either 12 or 23 bp. Efficient recombination occurs between a 12-RSS and a 23-RSS, a restriction known as the 12/23 rule. V(D)J recombination can be divided into two phases, DNA cleavage and DNA joining. DNA cleavage requires two lymphocyte-specific factors, the products of the recombination activating genes, RAG1 and RAG2, which together recognise the RSSs and create double strand breaks at the RSS-coding segment junctions []. RAG-mediated DNA cleavage occurs in a synaptic complex termed the paired complex, which is constituted from two distinct RSS-RAG complexes, a 12-SC and a 23-SC (where SC stands for signal complex). The DNA cleavage reaction involves two distinct enzymatic steps, initial nicking that creates a 3'-OH between a coding segment and its RSS, followed by hairpin formation in which the newly created 3'-OH attacks a phosphodiester bond on the opposite DNA strand. This generates a blunt, 5' phosphorylated signal end containing all of the RSS elements, and a covalently sealed hairpin coding end. The second phase of V(D)J recombination, in which broken DNA fragments are processed and joined, is less well characterised. Signal ends are typically joined precisely to form a signal joint, whereas joining of the coding ends requires the hairpin structure to be opened and typically involves nucleotide addition and deletion before formation of the coding joint. The factors involved in these processes include ubiquitously expressed proteins involved in the repair of DNA double strand breaks by nonhomologous end joining, terminal deoxynucleotidyl transferase, and Artemis protein. In addition to their critical roles in RSS recognition and DNA cleavage, the RAG proteins may perform two distinct types of functions in the postcleavage phase of V(D)J. A structural function has been inferred from the finding that, after DNA cleavage in vitro, the DNA ends remain associated with the RAG proteins in a "four end" complex known as the cleaved signal complex. After release of the coding ends in vitro, and after coding joint formation in vivo, the RAG proteins remain in a stable signal end complex (SEC) containing the two signal ends. These postcleavage complexes may serve as essential scaffolds for the second phase of the reaction, with the RAG proteins acting to organise the DNA processing and joining events. The second type of RAG protein-mediated postcleavage activity is the catalysis of phosphodiester bond hydrolysis and strand transfer reactions. The RAG proteins are capable of opening hairpin coding ends in vitro. The RAG proteins also show 3' flap endonuclease activity that may contribute to coding end processing/joining and can utilise the 3' OH group on the signal ends to attack hairpin coding ends (forming hybrid or open/shut joints) or virtually any DNA duplex (forming a transposition product).; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005634 nucleus
Probab=49.93 E-value=47 Score=33.96 Aligned_cols=86 Identities=15% Similarity=0.143 Sum_probs=51.7
Q ss_pred CCCccceeEEEEe-e-CCe--EEEEeccCCCCCCCCCCCCccccCCCCCCCcccceEEEEECCCCcEEe--CcCCCcccc
Q 048017 59 SSIGISAMHMQVL-N-NDK--VIIFDRTDMGPSNLSLPIDKCRKEGDVGQLDCTAHSVLYDIASNTFRP--LLLQTDTWC 132 (566)
Q Consensus 59 ~~~~~~a~h~~~l-~-~gk--V~~~gg~~~~~s~~~~p~G~~~~~~~~~~~~~~~~~~~yDp~t~~w~~--l~~~~~~~c 132 (566)
..+..|..|..-+ + .|| ++++||...-+ -|+.....=-.-.||.-.+.+.|++-+-.+. ++.+.+-+.
T Consensus 83 dvP~aRYGHt~~vV~SrGKta~VlFGGRSY~P------~~qRTTenWNsVvDC~P~VfLiDleFGC~tah~lpEl~dG~S 156 (337)
T PF03089_consen 83 DVPEARYGHTINVVHSRGKTACVLFGGRSYMP------PGQRTTENWNSVVDCPPQVFLIDLEFGCCTAHTLPELQDGQS 156 (337)
T ss_pred CCCcccccceEEEEEECCcEEEEEECCcccCC------ccccchhhcceeccCCCeEEEEeccccccccccchhhcCCeE
Confidence 3456677775544 3 676 77888864322 1211000000113577788888998877654 455566655
Q ss_pred cCCeecCCCcEEEEcCCC
Q 048017 133 SSGAVLSDGTLVQTGGYN 150 (566)
Q Consensus 133 ~~~~~l~dG~l~vvGG~~ 150 (566)
...++.-++.||++||+.
T Consensus 157 FHvslar~D~VYilGGHs 174 (337)
T PF03089_consen 157 FHVSLARNDCVYILGGHS 174 (337)
T ss_pred EEEEEecCceEEEEccEE
Confidence 545556689999999974
No 104
>PRK04792 tolB translocation protein TolB; Provisional
Probab=49.49 E-value=3.8e+02 Score=29.18 Aligned_cols=137 Identities=15% Similarity=0.098 Sum_probs=69.7
Q ss_pred eEEEEECCCCcEEeCcCCCcccccCCeecCCCcEEEEcCCCCCCCeEEEEcCCCCCCCcccccCcccccccCc-ceEEEe
Q 048017 110 HSVLYDIASNTFRPLLLQTDTWCSSGAVLSDGTLVQTGGYNVGDRVIRLFTPCNDEGCDWVELSKNLWDRRWY-ASNQIL 188 (566)
Q Consensus 110 ~~~~yDp~t~~w~~l~~~~~~~c~~~~~l~dG~l~vvGG~~~g~~~v~~ydP~~~~t~~W~~~~~~M~~~R~y-~s~~~L 188 (566)
...++|..+++-+.+...... -......+||+-+++-...++...+.++|.. +++.+.+.. .+.. ...+.-
T Consensus 243 ~L~~~dl~tg~~~~lt~~~g~-~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~---tg~~~~lt~----~~~~~~~p~wS 314 (448)
T PRK04792 243 EIFVQDIYTQVREKVTSFPGI-NGAPRFSPDGKKLALVLSKDGQPEIYVVDIA---TKALTRITR----HRAIDTEPSWH 314 (448)
T ss_pred EEEEEECCCCCeEEecCCCCC-cCCeeECCCCCEEEEEEeCCCCeEEEEEECC---CCCeEECcc----CCCCccceEEC
Confidence 467889988887766543211 1234567899855543333455678888987 666655433 1111 122334
Q ss_pred cCCcEEEEcCccCCeEEEE--eCCCCCCCeeeeccccccCCCCCCCCccceEEEecCCcEEEEEcC-----eeEEEeccC
Q 048017 189 PDNRIIVVGGRRVFTYEFY--PKIDSLSSSLYLRFLIETRDPGEENNLYPFLHLLPDGNLFIFANR-----RSILFDYIN 261 (566)
Q Consensus 189 ~dG~VyvvGG~~~~s~E~y--P~~~~~~~w~~~p~l~~~~d~~~~~~~yp~~~~l~~G~Ifv~Gg~-----~~e~yDp~t 261 (566)
+||+-+++........++| .... ..+..+.. .. ..+......+||+.+++.+. ..+++|..+
T Consensus 315 pDG~~I~f~s~~~g~~~Iy~~dl~~--g~~~~Lt~-~g--------~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~ 383 (448)
T PRK04792 315 PDGKSLIFTSERGGKPQIYRVNLAS--GKVSRLTF-EG--------EQNLGGSITPDGRSMIMVNRTNGKFNIARQDLET 383 (448)
T ss_pred CCCCEEEEEECCCCCceEEEEECCC--CCEEEEec-CC--------CCCcCeeECCCCCEEEEEEecCCceEEEEEECCC
Confidence 5887554433222223444 3221 12322211 00 01112234688886666432 356688888
Q ss_pred CeEE
Q 048017 262 NKLV 265 (566)
Q Consensus 262 ~~W~ 265 (566)
++..
T Consensus 384 g~~~ 387 (448)
T PRK04792 384 GAMQ 387 (448)
T ss_pred CCeE
Confidence 7654
No 105
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=48.35 E-value=1.3e+02 Score=31.62 Aligned_cols=79 Identities=14% Similarity=0.057 Sum_probs=51.4
Q ss_pred EEEEECCCCc--EEeCcCCCcccccCCeecCCCcEEEEcCCCCCCCeEEEEcCCCCCCCcccccCcccccccCcceEEEe
Q 048017 111 SVLYDIASNT--FRPLLLQTDTWCSSGAVLSDGTLVQTGGYNVGDRVIRLFTPCNDEGCDWVELSKNLWDRRWYASNQIL 188 (566)
Q Consensus 111 ~~~yDp~t~~--w~~l~~~~~~~c~~~~~l~dG~l~vvGG~~~g~~~v~~ydP~~~~t~~W~~~~~~M~~~R~y~s~~~L 188 (566)
+..+|+.+.+ |+.........+++.....||+||+-... + ...+||+.+. +..|..-.. .. .+|. +.++.
T Consensus 80 i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~i~~g~~~--g--~~y~ld~~~G-~~~W~~~~~-~~-~~~~-~~~v~ 151 (370)
T COG1520 80 IFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGKIYVGSWD--G--KLYALDASTG-TLVWSRNVG-GS-PYYA-SPPVV 151 (370)
T ss_pred EEEEeCCCCcEEecccCcCcceeccCceEEeCCeEEEeccc--c--eEEEEECCCC-cEEEEEecC-CC-eEEe-cCcEE
Confidence 5567888876 86554433445677777779998876543 2 6888998522 667986554 22 5554 34555
Q ss_pred cCCcEEEEc
Q 048017 189 PDNRIIVVG 197 (566)
Q Consensus 189 ~dG~VyvvG 197 (566)
.|+.||+.-
T Consensus 152 ~~~~v~~~s 160 (370)
T COG1520 152 GDGTVYVGT 160 (370)
T ss_pred cCcEEEEec
Confidence 589998864
No 106
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=48.33 E-value=2.2e+02 Score=30.76 Aligned_cols=87 Identities=14% Similarity=0.100 Sum_probs=48.8
Q ss_pred EEEEECCCCcEEeCcCCCcccccCCeecCCCcEEEEcCCCCCCCeEEEEcCCCCCCCcccccCcccccccCcceEEEe--
Q 048017 111 SVLYDIASNTFRPLLLQTDTWCSSGAVLSDGTLVQTGGYNVGDRVIRLFTPCNDEGCDWVELSKNLWDRRWYASNQIL-- 188 (566)
Q Consensus 111 ~~~yDp~t~~w~~l~~~~~~~c~~~~~l~dG~l~vvGG~~~g~~~v~~ydP~~~~t~~W~~~~~~M~~~R~y~s~~~L-- 188 (566)
..+||..|++-.-.-.-+..--.+....+||..+++||.+ ++++++|.. ..+ ++-. |+.-+---+-+..
T Consensus 327 ~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~D---nt~kVWDLR---~r~--~ly~-ipAH~nlVS~Vk~~p 397 (459)
T KOG0272|consen 327 GRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSD---NTCKVWDLR---MRS--ELYT-IPAHSNLVSQVKYSP 397 (459)
T ss_pred hheeecccCcEEEEecccccceeeEeECCCceEEeecCCC---CcEEEeeec---ccc--ccee-cccccchhhheEecc
Confidence 5688988887543222222222345667899999999864 577888876 211 1211 3322211111222
Q ss_pred cCCcEEEEcCccCCeEEEE
Q 048017 189 PDNRIIVVGGRRVFTYEFY 207 (566)
Q Consensus 189 ~dG~VyvvGG~~~~s~E~y 207 (566)
..|+.++..+.++ ++.+|
T Consensus 398 ~~g~fL~TasyD~-t~kiW 415 (459)
T KOG0272|consen 398 QEGYFLVTASYDN-TVKIW 415 (459)
T ss_pred cCCeEEEEcccCc-ceeee
Confidence 1578888888764 45566
No 107
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=46.59 E-value=2.4e+02 Score=29.65 Aligned_cols=95 Identities=18% Similarity=0.282 Sum_probs=58.0
Q ss_pred ccceEEEEECCCCcEEeCcC---CC-----cccccCCeecCCCcEEEEcCCCCCCCeEEEEcCCCCCCCcccccCcc---
Q 048017 107 CTAHSVLYDIASNTFRPLLL---QT-----DTWCSSGAVLSDGTLVQTGGYNVGDRVIRLFTPCNDEGCDWVELSKN--- 175 (566)
Q Consensus 107 ~~~~~~~yDp~t~~w~~l~~---~~-----~~~c~~~~~l~dG~l~vvGG~~~g~~~v~~ydP~~~~t~~W~~~~~~--- 175 (566)
.+-.+..||+..++.+.+.. ++ +.+|+.-...+||+.|-+-= .+.+++.+|.-..+ +++-.-....
T Consensus 213 stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasN--Rg~dsI~~f~V~~~-~g~L~~~~~~~te 289 (346)
T COG2706 213 STVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASN--RGHDSIAVFSVDPD-GGKLELVGITPTE 289 (346)
T ss_pred CEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEec--CCCCeEEEEEEcCC-CCEEEEEEEeccC
Confidence 34456778888889887753 22 34567667778999776642 35567777643311 3432211111
Q ss_pred cccccCcceEEEecCCcEEEEcCccCCeEEEE
Q 048017 176 LWDRRWYASNQILPDNRIIVVGGRRVFTYEFY 207 (566)
Q Consensus 176 M~~~R~y~s~~~L~dG~VyvvGG~~~~s~E~y 207 (566)
-..||.. ..-++|+.+++-+.++.++.+|
T Consensus 290 g~~PR~F---~i~~~g~~Liaa~q~sd~i~vf 318 (346)
T COG2706 290 GQFPRDF---NINPSGRFLIAANQKSDNITVF 318 (346)
T ss_pred CcCCccc---eeCCCCCEEEEEccCCCcEEEE
Confidence 2346643 2335789999998887777777
No 108
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=46.25 E-value=2e+02 Score=29.80 Aligned_cols=105 Identities=18% Similarity=0.287 Sum_probs=64.4
Q ss_pred eEEEEe-e-CCeEEEEeccCCCCCCCCCCCCccccCCCCCCCcccceEEEEECCCCcEEe-CcCC-CcccccCCeecCCC
Q 048017 66 MHMQVL-N-NDKVIIFDRTDMGPSNLSLPIDKCRKEGDVGQLDCTAHSVLYDIASNTFRP-LLLQ-TDTWCSSGAVLSDG 141 (566)
Q Consensus 66 ~h~~~l-~-~gkV~~~gg~~~~~s~~~~p~G~~~~~~~~~~~~~~~~~~~yDp~t~~w~~-l~~~-~~~~c~~~~~l~dG 141 (566)
.|.++. + .+.+++++..- | .+..+||+.+++-.. +... ...|+..+++.+||
T Consensus 7 gH~~a~~p~~~~avafaRRP----------G--------------~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG 62 (305)
T PF07433_consen 7 GHGVAAHPTRPEAVAFARRP----------G--------------TFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDG 62 (305)
T ss_pred ccceeeCCCCCeEEEEEeCC----------C--------------cEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCC
Confidence 355554 4 67888888742 2 257899999988653 3333 34577778888899
Q ss_pred cEEEEc-CCC-CCCCeEEEEcCCCCCCCcccccCcccc-cccCcceEEEecCCcEEEE--cCc
Q 048017 142 TLVQTG-GYN-VGDRVIRLFTPCNDEGCDWVELSKNLW-DRRWYASNQILPDNRIIVV--GGR 199 (566)
Q Consensus 142 ~l~vvG-G~~-~g~~~v~~ydP~~~~t~~W~~~~~~M~-~~R~y~s~~~L~dG~Vyvv--GG~ 199 (566)
+++.+= ... .+.-.|-+||.. ....++.. .+ .+-.-|-...++||+-+|| ||.
T Consensus 63 ~~LytTEnd~~~g~G~IgVyd~~----~~~~ri~E-~~s~GIGPHel~l~pDG~tLvVANGGI 120 (305)
T PF07433_consen 63 RLLYTTENDYETGRGVIGVYDAA----RGYRRIGE-FPSHGIGPHELLLMPDGETLVVANGGI 120 (305)
T ss_pred CEEEEeccccCCCcEEEEEEECc----CCcEEEeE-ecCCCcChhhEEEcCCCCEEEEEcCCC
Confidence 866553 322 234567889986 34444443 22 2334455677889955555 564
No 109
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=45.94 E-value=1.8e+02 Score=32.68 Aligned_cols=59 Identities=19% Similarity=0.168 Sum_probs=30.0
Q ss_pred eEEEEeeCCCCCeEEe--ccCCCcccceeEEccCCeEEEEcC-CCCCCCCCccccCc---CCcEE
Q 048017 336 CGRLKVTDKYPVWSME--FMPMPRVMSDMLLLPSGDVIIING-ASNGTAGWEDAEEP---DRRFV 394 (566)
Q Consensus 336 ~~~~d~~~~~~~W~~~--~M~~~R~~~~~vvLpdG~V~vvGG-~~~g~~~~~~~ydP---t~~Wt 394 (566)
+..+|....+..|+.. .+.......++-++.+|+||+... ...+..+...++|+ ...|+
T Consensus 132 l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~ 196 (527)
T TIGR03075 132 LVALDAKTGKVVWSKKNGDYKAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWR 196 (527)
T ss_pred EEEEECCCCCEEeecccccccccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEe
Confidence 4567766556778864 332221222333445888877532 21122234456777 34565
No 110
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=45.94 E-value=75 Score=36.42 Aligned_cols=98 Identities=17% Similarity=0.316 Sum_probs=54.7
Q ss_pred cCCCCCCCCCCCCCCCCCceEEccCCCccc-------eeEEEEe-eCCeEEEEeccCCCCCCCCCCCCccccCCCCCCCc
Q 048017 35 YSPNNNNNNNNMPSKSGGQWVLLQSSIGIS-------AMHMQVL-NNDKVIIFDRTDMGPSNLSLPIDKCRKEGDVGQLD 106 (566)
Q Consensus 35 ~~~~~~~~~~~~~~~~~g~W~~l~~~~~~~-------a~h~~~l-~~gkV~~~gg~~~~~s~~~~p~G~~~~~~~~~~~~ 106 (566)
.+|+++=-+.-+.+..-..|....++. +| .+++..+ ++|+-++-|+.+
T Consensus 543 FHPNs~Y~aTGSsD~tVRlWDv~~G~~-VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed----------------------- 598 (707)
T KOG0263|consen 543 FHPNSNYVATGSSDRTVRLWDVSTGNS-VRIFTGHKGPVTALAFSPCGRYLASGDED----------------------- 598 (707)
T ss_pred ECCcccccccCCCCceEEEEEcCCCcE-EEEecCCCCceEEEEEcCCCceEeecccC-----------------------
Confidence 344444433444445557899876542 22 2333333 577777776643
Q ss_pred ccceEEEEECCCCcE-EeCcCCCcccccCCeecCCCcEEEEcCCCCCCCeEEEEcCC
Q 048017 107 CTAHSVLYDIASNTF-RPLLLQTDTWCSSGAVLSDGTLVQTGGYNVGDRVIRLFTPC 162 (566)
Q Consensus 107 ~~~~~~~yDp~t~~w-~~l~~~~~~~c~~~~~l~dG~l~vvGG~~~g~~~v~~ydP~ 162 (566)
..+-+||..+++- ..+-.-+..-|+ -.+-.||.|+++||.+ ++++++|-.
T Consensus 599 --~~I~iWDl~~~~~v~~l~~Ht~ti~S-lsFS~dg~vLasgg~D---nsV~lWD~~ 649 (707)
T KOG0263|consen 599 --GLIKIWDLANGSLVKQLKGHTGTIYS-LSFSRDGNVLASGGAD---NSVRLWDLT 649 (707)
T ss_pred --CcEEEEEcCCCcchhhhhcccCceeE-EEEecCCCEEEecCCC---CeEEEEEch
Confidence 1267889887542 111111111111 2234699999999965 788888865
No 111
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=45.81 E-value=3.9e+02 Score=29.50 Aligned_cols=25 Identities=16% Similarity=0.317 Sum_probs=17.3
Q ss_pred ecCCcEEEEEc-CeeEEEeccCCe--EE
Q 048017 241 LPDGNLFIFAN-RRSILFDYINNK--LV 265 (566)
Q Consensus 241 l~~G~Ifv~Gg-~~~e~yDp~t~~--W~ 265 (566)
..+|+||+... .....+|.++++ |.
T Consensus 59 v~~g~vy~~~~~g~l~AlD~~tG~~~W~ 86 (488)
T cd00216 59 VVDGDMYFTTSHSALFALDAATGKVLWR 86 (488)
T ss_pred EECCEEEEeCCCCcEEEEECCCChhhce
Confidence 45888887654 356778988764 65
No 112
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=45.57 E-value=3.7e+02 Score=27.88 Aligned_cols=84 Identities=15% Similarity=0.234 Sum_probs=48.7
Q ss_pred eEEEEECCCCcEEeCcCCC-cccccCCeecCCCcEEEEcCCCCCCCeEEEEcCCCCCCCcccccCcccccccCcceEEEe
Q 048017 110 HSVLYDIASNTFRPLLLQT-DTWCSSGAVLSDGTLVQTGGYNVGDRVIRLFTPCNDEGCDWVELSKNLWDRRWYASNQIL 188 (566)
Q Consensus 110 ~~~~yDp~t~~w~~l~~~~-~~~c~~~~~l~dG~l~vvGG~~~g~~~v~~ydP~~~~t~~W~~~~~~M~~~R~y~s~~~L 188 (566)
.+..||..++.-..+..-. ..+|-... ..-..+|.|||+ ++++++||+ . +-....- ++..+-| ++. +
T Consensus 76 ~vr~~Dln~~~~~~igth~~~i~ci~~~--~~~~~vIsgsWD---~~ik~wD~R---~-~~~~~~~-d~~kkVy-~~~-v 143 (323)
T KOG1036|consen 76 QVRRYDLNTGNEDQIGTHDEGIRCIEYS--YEVGCVISGSWD---KTIKFWDPR---N-KVVVGTF-DQGKKVY-CMD-V 143 (323)
T ss_pred eEEEEEecCCcceeeccCCCceEEEEee--ccCCeEEEcccC---ccEEEEecc---c-ccccccc-ccCceEE-EEe-c
Confidence 4778898888766654322 22342222 234467889996 689999998 3 2222222 4444544 233 3
Q ss_pred cCCcEEEEcCccCCeEEEE
Q 048017 189 PDNRIIVVGGRRVFTYEFY 207 (566)
Q Consensus 189 ~dG~VyvvGG~~~~s~E~y 207 (566)
.|..+|+|+.+. .+-+|
T Consensus 144 -~g~~LvVg~~~r-~v~iy 160 (323)
T KOG1036|consen 144 -SGNRLVVGTSDR-KVLIY 160 (323)
T ss_pred -cCCEEEEeecCc-eEEEE
Confidence 477888888764 34455
No 113
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=45.23 E-value=2.3e+02 Score=29.97 Aligned_cols=138 Identities=13% Similarity=0.145 Sum_probs=67.0
Q ss_pred ceEEEEECCCCcEEeCcCCCcccccCC---------eecCCCcEEEEcCCCCC---CCeEEEEcCCCCCCCcccccCccc
Q 048017 109 AHSVLYDIASNTFRPLLLQTDTWCSSG---------AVLSDGTLVQTGGYNVG---DRVIRLFTPCNDEGCDWVELSKNL 176 (566)
Q Consensus 109 ~~~~~yDp~t~~w~~l~~~~~~~c~~~---------~~l~dG~l~vvGG~~~g---~~~v~~ydP~~~~t~~W~~~~~~M 176 (566)
..+.+-|.+.++....- ..+-|... +.=.||.++.+.=..+| .+..++|++. .+-.-.-+. +
T Consensus 118 ~SVtVVDl~~~kvv~ei--~~PGC~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~---~dp~f~~~~-~ 191 (342)
T PF06433_consen 118 TSVTVVDLAAKKVVGEI--DTPGCWLIYPSGNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPD---DDPLFEHPA-Y 191 (342)
T ss_dssp EEEEEEETTTTEEEEEE--EGTSEEEEEEEETTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTT---TS-B-S--E-E
T ss_pred CeEEEEECCCCceeeee--cCCCEEEEEecCCCceEEEecCCceEEEEECCCCCEeEeeccccCCC---Ccccccccc-e
Confidence 46788899888874321 11112111 11136666655311122 2445789987 443433332 2
Q ss_pred --ccccCcceEEEecCCcEEE--EcCccCCeEEEEe-CC--CCCCCeeeeccccccCCCCCCCCccceEEEecCCcEEEE
Q 048017 177 --WDRRWYASNQILPDNRIIV--VGGRRVFTYEFYP-KI--DSLSSSLYLRFLIETRDPGEENNLYPFLHLLPDGNLFIF 249 (566)
Q Consensus 177 --~~~R~y~s~~~L~dG~Vyv--vGG~~~~s~E~yP-~~--~~~~~w~~~p~l~~~~d~~~~~~~yp~~~~l~~G~Ifv~ 249 (566)
...|||. .+. +|+||. ++|......+-|+ .+ +..+.|+. ..|-..++--..++||+.
T Consensus 192 ~~~~~~~~F--~Sy-~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrP-------------GG~Q~~A~~~~~~rlyvL 255 (342)
T PF06433_consen 192 SRDGGRLYF--VSY-EGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRP-------------GGWQLIAYHAASGRLYVL 255 (342)
T ss_dssp ETTTTEEEE--EBT-TSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE--------------SSS-EEEETTTTEEEEE
T ss_pred ECCCCeEEE--Eec-CCEEEEEeccCCcccccCcccccCccccccCcCC-------------cceeeeeeccccCeEEEE
Confidence 1245654 455 899998 4554311111111 00 00123432 122333333457888887
Q ss_pred Ec-----------CeeEEEeccCCeEEEee
Q 048017 250 AN-----------RRSILFDYINNKLVKEF 268 (566)
Q Consensus 250 Gg-----------~~~e~yDp~t~~W~~~~ 268 (566)
-. ..+|.||.++.+-...+
T Consensus 256 Mh~g~~gsHKdpgteVWv~D~~t~krv~Ri 285 (342)
T PF06433_consen 256 MHQGGEGSHKDPGTEVWVYDLKTHKRVARI 285 (342)
T ss_dssp EEE--TT-TTS-EEEEEEEETTTTEEEEEE
T ss_pred ecCCCCCCccCCceEEEEEECCCCeEEEEE
Confidence 43 24799999999866544
No 114
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=45.08 E-value=84 Score=32.29 Aligned_cols=89 Identities=18% Similarity=0.290 Sum_probs=51.5
Q ss_pred CCCc-ccceeEEccCCeEE-EEcCCCCCCCCCccccCcCCcEEeccCCCCCCcceeEEEEcCCCcEEEe-cCC--CCccc
Q 048017 354 PMPR-VMSDMLLLPSGDVI-IINGASNGTAGWEDAEEPDRRFVVLNPSKIPRMYHSSAVVLPDGRILVG-GSN--PHRRY 428 (566)
Q Consensus 354 ~~~R-~~~~~vvLpdG~V~-vvGG~~~g~~~~~~~ydPt~~Wt~~~~~~~~R~yhs~a~LlpdG~V~v~-GG~--~~~~~ 428 (566)
...| .++-.|--+||+++ ..=+......+..-.||-+..++.++.-+.--+...-.+|++|||.+|+ +|+ .+..
T Consensus 110 ~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpd- 188 (366)
T COG3490 110 QEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPD- 188 (366)
T ss_pred ccCceeecccccCCCCcEEEeecCCCCCCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeCCceecccc-
Confidence 3445 34444677899854 4433222333333468887777777665544343335778899997754 443 2221
Q ss_pred ccCCCCCCCcceEEEEeccc
Q 048017 429 NFTAYPYPTDLSLEAFHPHY 448 (566)
Q Consensus 429 ~~~~~~~~~~~~vE~y~Ppy 448 (566)
|. .+++++|-..|.+
T Consensus 189 -fg----R~~lNldsMePSl 203 (366)
T COG3490 189 -FG----RTELNLDSMEPSL 203 (366)
T ss_pred -cC----ccccchhhcCccE
Confidence 11 2577888888887
No 115
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=44.76 E-value=1.5e+02 Score=31.03 Aligned_cols=92 Identities=14% Similarity=0.170 Sum_probs=49.3
Q ss_pred EEEECCCCcEEeCcC---CC-----cccccCCeecCCCcEEEEcCCCCCCCeEEEEcCCCCCCCcccccCccccc-ccCc
Q 048017 112 VLYDIASNTFRPLLL---QT-----DTWCSSGAVLSDGTLVQTGGYNVGDRVIRLFTPCNDEGCDWVELSKNLWD-RRWY 182 (566)
Q Consensus 112 ~~yDp~t~~w~~l~~---~~-----~~~c~~~~~l~dG~l~vvGG~~~g~~~v~~ydP~~~~t~~W~~~~~~M~~-~R~y 182 (566)
..|++.+++++.+.. .. ...++..++.+||+.+.+.- .+.+++.+|+.... +.+.+.+.. ... +++-
T Consensus 219 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsn--r~~~sI~vf~~d~~-~g~l~~~~~-~~~~G~~P 294 (345)
T PF10282_consen 219 FDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSN--RGSNSISVFDLDPA-TGTLTLVQT-VPTGGKFP 294 (345)
T ss_dssp EEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEE--CTTTEEEEEEECTT-TTTEEEEEE-EEESSSSE
T ss_pred EeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEe--ccCCEEEEEEEecC-CCceEEEEE-EeCCCCCc
Confidence 344555777765432 11 12445556667888555432 23577888876311 344444332 322 2221
Q ss_pred ceEEEecCCcEEEEcCccCCeEEEE
Q 048017 183 ASNQILPDNRIIVVGGRRVFTYEFY 207 (566)
Q Consensus 183 ~s~~~L~dG~VyvvGG~~~~s~E~y 207 (566)
-..+.-+||+.++++...+..+.+|
T Consensus 295 r~~~~s~~g~~l~Va~~~s~~v~vf 319 (345)
T PF10282_consen 295 RHFAFSPDGRYLYVANQDSNTVSVF 319 (345)
T ss_dssp EEEEE-TTSSEEEEEETTTTEEEEE
T ss_pred cEEEEeCCCCEEEEEecCCCeEEEE
Confidence 1244447899888888777777777
No 116
>TIGR02608 delta_60_rpt delta-60 repeat domain. This domain occurs in tandem repeats, as many as 13, in proteins from Bdellovibrio bacteriovorus, Azotobacter vinelandii, Geobacter sulfurreducens, Pirellula sp. 1, Myxococcus xanthus, and others, many of which are Deltaproteobacteria. The periodicity of the repeat ranges from about 57 to 61 amino acids, and a core region of about 54 is represented by this model and seed alignment.
Probab=43.94 E-value=22 Score=26.97 Aligned_cols=17 Identities=41% Similarity=0.612 Sum_probs=13.2
Q ss_pred EEEEcCCCcEEEecCCC
Q 048017 408 SAVVLPDGRILVGGSNP 424 (566)
Q Consensus 408 ~a~LlpdG~V~v~GG~~ 424 (566)
...++|||||+++|...
T Consensus 5 ~~~~q~DGkIlv~G~~~ 21 (55)
T TIGR02608 5 AVAVQSDGKILVAGYVD 21 (55)
T ss_pred EEEECCCCcEEEEEEee
Confidence 34567999999999753
No 117
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=42.37 E-value=4.4e+02 Score=27.81 Aligned_cols=138 Identities=17% Similarity=0.120 Sum_probs=67.1
Q ss_pred eEEEEECCCCcEEeCcCCCcccccCCeecCCCcEEEEcCCCCCCCeEEEEcCCCCCCCcccccCcccccccCcceEEEec
Q 048017 110 HSVLYDIASNTFRPLLLQTDTWCSSGAVLSDGTLVQTGGYNVGDRVIRLFTPCNDEGCDWVELSKNLWDRRWYASNQILP 189 (566)
Q Consensus 110 ~~~~yDp~t~~w~~l~~~~~~~c~~~~~l~dG~l~vvGG~~~g~~~v~~ydP~~~~t~~W~~~~~~M~~~R~y~s~~~L~ 189 (566)
...+||..+++.+.+...... .......+||+-+++....++...+.++|.. +...+.+.. .. .........+
T Consensus 215 ~i~v~d~~~g~~~~~~~~~~~-~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~---~~~~~~l~~-~~--~~~~~~~~s~ 287 (417)
T TIGR02800 215 EIYVQDLATGQREKVASFPGM-NGAPAFSPDGSKLAVSLSKDGNPDIYVMDLD---GKQLTRLTN-GP--GIDTEPSWSP 287 (417)
T ss_pred EEEEEECCCCCEEEeecCCCC-ccceEECCCCCEEEEEECCCCCccEEEEECC---CCCEEECCC-CC--CCCCCEEECC
Confidence 467889988877665543221 1234567888744443323344678888887 555444432 11 1111122345
Q ss_pred CCcEEEEcCccCCeEEEE--eCCCCCCCeeeeccccccCCCCCCCCccceEEEecCCcEEEEEcC-----eeEEEeccCC
Q 048017 190 DNRIIVVGGRRVFTYEFY--PKIDSLSSSLYLRFLIETRDPGEENNLYPFLHLLPDGNLFIFANR-----RSILFDYINN 262 (566)
Q Consensus 190 dG~VyvvGG~~~~s~E~y--P~~~~~~~w~~~p~l~~~~d~~~~~~~yp~~~~l~~G~Ifv~Gg~-----~~e~yDp~t~ 262 (566)
||+-+++.........+| .... ..+..+... . .........+||+.+++... ...++|..++
T Consensus 288 dg~~l~~~s~~~g~~~iy~~d~~~--~~~~~l~~~-~--------~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~ 356 (417)
T TIGR02800 288 DGKSIAFTSDRGGSPQIYMMDADG--GEVRRLTFR-G--------GYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGG 356 (417)
T ss_pred CCCEEEEEECCCCCceEEEEECCC--CCEEEeecC-C--------CCccCeEECCCCCEEEEEEccCCceEEEEEeCCCC
Confidence 786554433222122333 2221 122211110 0 01112234678887776543 4567888876
Q ss_pred eEE
Q 048017 263 KLV 265 (566)
Q Consensus 263 ~W~ 265 (566)
.+.
T Consensus 357 ~~~ 359 (417)
T TIGR02800 357 GER 359 (417)
T ss_pred CeE
Confidence 554
No 118
>PRK01742 tolB translocation protein TolB; Provisional
Probab=42.27 E-value=2.4e+02 Score=30.39 Aligned_cols=134 Identities=14% Similarity=0.138 Sum_probs=68.3
Q ss_pred eEEEEECCCCcEEeCcCCCcccccCCeecCCCcEEEEcCCCCCCCeEEEEcCCCCCCCcccccCcccccccC-cceEEEe
Q 048017 110 HSVLYDIASNTFRPLLLQTDTWCSSGAVLSDGTLVQTGGYNVGDRVIRLFTPCNDEGCDWVELSKNLWDRRW-YASNQIL 188 (566)
Q Consensus 110 ~~~~yDp~t~~w~~l~~~~~~~c~~~~~l~dG~l~vvGG~~~g~~~v~~ydP~~~~t~~W~~~~~~M~~~R~-y~s~~~L 188 (566)
...++|..+++-+.+..... ........+||+.++++...++...++.+|.. +.+.+.+.. ... .....--
T Consensus 229 ~i~i~dl~tg~~~~l~~~~g-~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~---~~~~~~lt~----~~~~~~~~~wS 300 (429)
T PRK01742 229 QLVVHDLRSGARKVVASFRG-HNGAPAFSPDGSRLAFASSKDGVLNIYVMGAN---GGTPSQLTS----GAGNNTEPSWS 300 (429)
T ss_pred EEEEEeCCCCceEEEecCCC-ccCceeECCCCCEEEEEEecCCcEEEEEEECC---CCCeEeecc----CCCCcCCEEEC
Confidence 36778888877665543321 12235667899877776544444567777876 555444322 111 1233445
Q ss_pred cCCcEEEEcCccCCeEEEE--eCCCCCCCeeeeccccccCCCCCCCCccceEEEecCCcEEEEE-cCeeEEEeccCCeEE
Q 048017 189 PDNRIIVVGGRRVFTYEFY--PKIDSLSSSLYLRFLIETRDPGEENNLYPFLHLLPDGNLFIFA-NRRSILFDYINNKLV 265 (566)
Q Consensus 189 ~dG~VyvvGG~~~~s~E~y--P~~~~~~~w~~~p~l~~~~d~~~~~~~yp~~~~l~~G~Ifv~G-g~~~e~yDp~t~~W~ 265 (566)
+||+-+++........++| +... ... ..+.. .. |. ....+||+.+++. +....++|..++++.
T Consensus 301 pDG~~i~f~s~~~g~~~I~~~~~~~---~~~--~~l~~-------~~-~~-~~~SpDG~~ia~~~~~~i~~~Dl~~g~~~ 366 (429)
T PRK01742 301 PDGQSILFTSDRSGSPQVYRMSASG---GGA--SLVGG-------RG-YS-AQISADGKTLVMINGDNVVKQDLTSGSTE 366 (429)
T ss_pred CCCCEEEEEECCCCCceEEEEECCC---CCe--EEecC-------CC-CC-ccCCCCCCEEEEEcCCCEEEEECCCCCeE
Confidence 6887544433222233455 2211 111 01110 01 21 2246788755444 445667888888775
No 119
>PF13540 RCC1_2: Regulator of chromosome condensation (RCC1) repeat; PDB: 3QI0_D 1JTD_B 3QHY_B.
Probab=42.16 E-value=31 Score=22.47 Aligned_cols=22 Identities=32% Similarity=0.498 Sum_probs=14.0
Q ss_pred cceeEEEEcCCCcEEEecCCCCc
Q 048017 404 MYHSSAVVLPDGRILVGGSNPHR 426 (566)
Q Consensus 404 ~yhs~a~LlpdG~V~v~GG~~~~ 426 (566)
.+|+++ |+.||+||.-|.+..+
T Consensus 8 ~~ht~a-l~~~g~v~~wG~n~~G 29 (30)
T PF13540_consen 8 GYHTCA-LTSDGEVYCWGDNNYG 29 (30)
T ss_dssp SSEEEE-EE-TTEEEEEE--TTS
T ss_pred CCEEEE-EEcCCCEEEEcCCcCC
Confidence 468655 5589999999987543
No 120
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=41.72 E-value=1.5e+02 Score=31.56 Aligned_cols=106 Identities=21% Similarity=0.288 Sum_probs=62.7
Q ss_pred ecCCCcEEEEcCCCCCCCeEEEEcCCCCCCCcccccCcccc-cccCcceEEEecCCcEEEEcCccCCeEEEE-eCCCC--
Q 048017 137 VLSDGTLVQTGGYNVGDRVIRLFTPCNDEGCDWVELSKNLW-DRRWYASNQILPDNRIIVVGGRRVFTYEFY-PKIDS-- 212 (566)
Q Consensus 137 ~l~dG~l~vvGG~~~g~~~v~~ydP~~~~t~~W~~~~~~M~-~~R~y~s~~~L~dG~VyvvGG~~~~s~E~y-P~~~~-- 212 (566)
+-++|+.++.|+ |..+++++|+. +.+ .... +. ...|-.++.--+||+.++.|-.+ .++-+| |++..
T Consensus 123 fsp~g~~l~tGs---GD~TvR~WD~~---TeT--p~~t-~KgH~~WVlcvawsPDgk~iASG~~d-g~I~lwdpktg~~~ 192 (480)
T KOG0271|consen 123 FSPTGSRLVTGS---GDTTVRLWDLD---TET--PLFT-CKGHKNWVLCVAWSPDGKKIASGSKD-GSIRLWDPKTGQQI 192 (480)
T ss_pred ecCCCceEEecC---CCceEEeeccC---CCC--ccee-ecCCccEEEEEEECCCcchhhccccC-CeEEEecCCCCCcc
Confidence 346888888886 34789999998 433 1111 22 45677777777899998877654 456677 77640
Q ss_pred ------CCCeeeeccccccCCCCCCCCccceEEEecCCcEEEEEc--CeeEEEeccCCeEE
Q 048017 213 ------LSSSLYLRFLIETRDPGEENNLYPFLHLLPDGNLFIFAN--RRSILFDYINNKLV 265 (566)
Q Consensus 213 ------~~~w~~~p~l~~~~d~~~~~~~yp~~~~l~~G~Ifv~Gg--~~~e~yDp~t~~W~ 265 (566)
-.+|... ..|.| .++.+..+.++.++ .++.++|.+.++-.
T Consensus 193 g~~l~gH~K~It~------------Lawep-~hl~p~~r~las~skDg~vrIWd~~~~~~~ 240 (480)
T KOG0271|consen 193 GRALRGHKKWITA------------LAWEP-LHLVPPCRRLASSSKDGSVRIWDTKLGTCV 240 (480)
T ss_pred cccccCcccceeE------------Eeecc-cccCCCccceecccCCCCEEEEEccCceEE
Confidence 1123211 01111 23455666666654 34667888776654
No 121
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=41.66 E-value=5.1e+02 Score=28.41 Aligned_cols=110 Identities=15% Similarity=0.247 Sum_probs=57.2
Q ss_pred CCCcEEEEcCCCCCCCeEEEEcCCCCCCCcccccCcccccccCc-ceEEEecCCc-EEEEcCccCCeEEEE-eCCCCCCC
Q 048017 139 SDGTLVQTGGYNVGDRVIRLFTPCNDEGCDWVELSKNLWDRRWY-ASNQILPDNR-IIVVGGRRVFTYEFY-PKIDSLSS 215 (566)
Q Consensus 139 ~dG~l~vvGG~~~g~~~v~~ydP~~~~t~~W~~~~~~M~~~R~y-~s~~~L~dG~-VyvvGG~~~~s~E~y-P~~~~~~~ 215 (566)
+.-.+++++|.+ +.+++|--. ..+=..+.+ |...+.- .+++..++|. +.+.+|+...- -.| -.+. .
T Consensus 223 p~~plllvaG~d---~~lrifqvD---Gk~N~~lqS-~~l~~fPi~~a~f~p~G~~~i~~s~rrky~-ysyDle~a---k 291 (514)
T KOG2055|consen 223 PTAPLLLVAGLD---GTLRIFQVD---GKVNPKLQS-IHLEKFPIQKAEFAPNGHSVIFTSGRRKYL-YSYDLETA---K 291 (514)
T ss_pred CCCceEEEecCC---CcEEEEEec---CccChhhee-eeeccCccceeeecCCCceEEEecccceEE-EEeecccc---c
Confidence 456688888875 456666544 222224444 5554432 3566677898 88888876421 122 1110 1
Q ss_pred ee-eeccccccCCCCCCCCccceEEEecCCcEEEEEcCeeEE--EeccCCeEE
Q 048017 216 SL-YLRFLIETRDPGEENNLYPFLHLLPDGNLFIFANRRSIL--FDYINNKLV 265 (566)
Q Consensus 216 w~-~~p~l~~~~d~~~~~~~yp~~~~l~~G~Ifv~Gg~~~e~--yDp~t~~W~ 265 (566)
-. ..|+. .. +....-..-+.++++..++.|+..++ ...+++.|.
T Consensus 292 ~~k~~~~~-g~-----e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli 338 (514)
T KOG2055|consen 292 VTKLKPPY-GV-----EEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELI 338 (514)
T ss_pred cccccCCC-Cc-----ccchhheeEecCCCCeEEEcccCceEEeehhhhhhhh
Confidence 11 11110 00 00011123466788888888876654 456677775
No 122
>PRK05137 tolB translocation protein TolB; Provisional
Probab=41.41 E-value=4.8e+02 Score=28.06 Aligned_cols=81 Identities=16% Similarity=0.016 Sum_probs=45.7
Q ss_pred eEEEEECCCCcEEeCcCCCcccccCCeecCCCcEEEEcCCCCCCCeEEEEcCCCCCCCcccccCcccccccCcceEEEec
Q 048017 110 HSVLYDIASNTFRPLLLQTDTWCSSGAVLSDGTLVQTGGYNVGDRVIRLFTPCNDEGCDWVELSKNLWDRRWYASNQILP 189 (566)
Q Consensus 110 ~~~~yDp~t~~w~~l~~~~~~~c~~~~~l~dG~l~vvGG~~~g~~~v~~ydP~~~~t~~W~~~~~~M~~~R~y~s~~~L~ 189 (566)
.+.++|+.+++.+.+..... ........+||+-+++....++...+.++|.. +...+.+.. -.. .......-+
T Consensus 227 ~i~~~dl~~g~~~~l~~~~g-~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~---~~~~~~Lt~-~~~--~~~~~~~sp 299 (435)
T PRK05137 227 RVYLLDLETGQRELVGNFPG-MTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLR---SGTTTRLTD-SPA--IDTSPSYSP 299 (435)
T ss_pred EEEEEECCCCcEEEeecCCC-cccCcEECCCCCEEEEEEecCCCceEEEEECC---CCceEEccC-CCC--ccCceeEcC
Confidence 47889999998887764322 12245667899765544333455678888887 555444432 110 011123345
Q ss_pred CCcEEEEc
Q 048017 190 DNRIIVVG 197 (566)
Q Consensus 190 dG~VyvvG 197 (566)
||+-+++.
T Consensus 300 DG~~i~f~ 307 (435)
T PRK05137 300 DGSQIVFE 307 (435)
T ss_pred CCCEEEEE
Confidence 88755544
No 123
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=41.03 E-value=3.9e+02 Score=28.16 Aligned_cols=91 Identities=15% Similarity=0.123 Sum_probs=51.8
Q ss_pred eEEEEECCCCcEEeCcCCCcccccCCeecCCCcEEEEcCCCCCCCeEEEEcCCCCCCCcccccCcccccccCcceEEEec
Q 048017 110 HSVLYDIASNTFRPLLLQTDTWCSSGAVLSDGTLVQTGGYNVGDRVIRLFTPCNDEGCDWVELSKNLWDRRWYASNQILP 189 (566)
Q Consensus 110 ~~~~yDp~t~~w~~l~~~~~~~c~~~~~l~dG~l~vvGG~~~g~~~v~~ydP~~~~t~~W~~~~~~M~~~R~y~s~~~L~ 189 (566)
...+||..+++.+.+...... -......+||+.+++.....+...+..+|.. +.++..+.. ...+......-+
T Consensus 259 ~i~~~d~~~~~~~~l~~~~~~-~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~---~~~~~~l~~---~~~~~~~~~~sp 331 (417)
T TIGR02800 259 DIYVMDLDGKQLTRLTNGPGI-DTEPSWSPDGKSIAFTSDRGGSPQIYMMDAD---GGEVRRLTF---RGGYNASPSWSP 331 (417)
T ss_pred cEEEEECCCCCEEECCCCCCC-CCCEEECCCCCEEEEEECCCCCceEEEEECC---CCCEEEeec---CCCCccCeEECC
Confidence 467789988888777543211 1122445688766554433345578888887 666654432 122233344456
Q ss_pred CCcEEEEcCccCCeEEEE
Q 048017 190 DNRIIVVGGRRVFTYEFY 207 (566)
Q Consensus 190 dG~VyvvGG~~~~s~E~y 207 (566)
||+.+++.........+|
T Consensus 332 dg~~i~~~~~~~~~~~i~ 349 (417)
T TIGR02800 332 DGDLIAFVHREGGGFNIA 349 (417)
T ss_pred CCCEEEEEEccCCceEEE
Confidence 888887766554333443
No 124
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=39.56 E-value=2.9e+02 Score=30.07 Aligned_cols=61 Identities=20% Similarity=0.252 Sum_probs=34.3
Q ss_pred eEEEecCCcEEEEcCccCCeEEEE--eCCCCCCCeeeeccccccCCCCCCCCccceEEEecCCcEEEEEcCeeEEEec
Q 048017 184 SNQILPDNRIIVVGGRRVFTYEFY--PKIDSLSSSLYLRFLIETRDPGEENNLYPFLHLLPDGNLFIFANRRSILFDY 259 (566)
Q Consensus 184 s~~~L~dG~VyvvGG~~~~s~E~y--P~~~~~~~w~~~p~l~~~~d~~~~~~~yp~~~~l~~G~Ifv~Gg~~~e~yDp 259 (566)
+.-+|.-+|+..+||++. ++.+| |.. .-.... +..-.+-++++.|..=|+.|.....++=+
T Consensus 291 ~IdaL~reR~vtVGgrDr-T~rlwKi~ee----sqlifr----------g~~~sidcv~~In~~HfvsGSdnG~IaLW 353 (479)
T KOG0299|consen 291 GIDALSRERCVTVGGRDR-TVRLWKIPEE----SQLIFR----------GGEGSIDCVAFINDEHFVSGSDNGSIALW 353 (479)
T ss_pred eechhcccceEEeccccc-eeEEEecccc----ceeeee----------CCCCCeeeEEEecccceeeccCCceEEEe
Confidence 344566789999999874 44555 332 010000 00113345667788888888876655433
No 125
>PRK03629 tolB translocation protein TolB; Provisional
Probab=39.37 E-value=4.1e+02 Score=28.69 Aligned_cols=84 Identities=11% Similarity=0.078 Sum_probs=48.6
Q ss_pred eEEEEECCCCcEEeCcCCCcccccCCeecCCCcEEEEcCCCCCCCeEEEEcCCCCCCCcccccCcccccccCcceEEEec
Q 048017 110 HSVLYDIASNTFRPLLLQTDTWCSSGAVLSDGTLVQTGGYNVGDRVIRLFTPCNDEGCDWVELSKNLWDRRWYASNQILP 189 (566)
Q Consensus 110 ~~~~yDp~t~~w~~l~~~~~~~c~~~~~l~dG~l~vvGG~~~g~~~v~~ydP~~~~t~~W~~~~~~M~~~R~y~s~~~L~ 189 (566)
...+||.++++.+.+..... ........+||+.+++.....+...+..+|.. +.+-..+.. ...........+
T Consensus 268 ~I~~~d~~tg~~~~lt~~~~-~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~---~g~~~~lt~---~~~~~~~~~~Sp 340 (429)
T PRK03629 268 NLYVMDLASGQIRQVTDGRS-NNTEPTWFPDSQNLAYTSDQAGRPQVYKVNIN---GGAPQRITW---EGSQNQDADVSS 340 (429)
T ss_pred EEEEEECCCCCEEEccCCCC-CcCceEECCCCCEEEEEeCCCCCceEEEEECC---CCCeEEeec---CCCCccCEEECC
Confidence 46778999998888764322 22345667899866655433344567777877 444433321 111122344457
Q ss_pred CCcEEEEcCcc
Q 048017 190 DNRIIVVGGRR 200 (566)
Q Consensus 190 dG~VyvvGG~~ 200 (566)
||+.++..+..
T Consensus 341 DG~~Ia~~~~~ 351 (429)
T PRK03629 341 DGKFMVMVSSN 351 (429)
T ss_pred CCCEEEEEEcc
Confidence 88877665543
No 126
>PTZ00421 coronin; Provisional
Probab=39.21 E-value=4e+02 Score=29.65 Aligned_cols=53 Identities=15% Similarity=0.077 Sum_probs=27.0
Q ss_pred eEEEEECCCCcEEe-CcCCCcccccCCeecCCCcEEEEcCCC-CCCCeEEEEcCC
Q 048017 110 HSVLYDIASNTFRP-LLLQTDTWCSSGAVLSDGTLVQTGGYN-VGDRVIRLFTPC 162 (566)
Q Consensus 110 ~~~~yDp~t~~w~~-l~~~~~~~c~~~~~l~dG~l~vvGG~~-~g~~~v~~ydP~ 162 (566)
.+.+||+.+++-.. +...............++..+++.|.. ...+.+.+||..
T Consensus 191 ~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr 245 (493)
T PTZ00421 191 KLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTR 245 (493)
T ss_pred EEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCC
Confidence 47789998776321 111111111112233455555555543 234689999986
No 127
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=38.40 E-value=1.8e+02 Score=32.52 Aligned_cols=57 Identities=11% Similarity=0.109 Sum_probs=30.3
Q ss_pred CeecCCCcEEEEcCCCCCCCeEEEEcCCCCCCCcccccCcccccccCcceEEEecCCcEEEE
Q 048017 135 GAVLSDGTLVQTGGYNVGDRVIRLFTPCNDEGCDWVELSKNLWDRRWYASNQILPDNRIIVV 196 (566)
Q Consensus 135 ~~~l~dG~l~vvGG~~~g~~~v~~ydP~~~~t~~W~~~~~~M~~~R~y~s~~~L~dG~Vyvv 196 (566)
+..+.+++||+.... ..+..+|..+. .-.|......+.......++-++.+|+||+-
T Consensus 115 g~av~~~~v~v~t~d----g~l~ALDa~TG-k~~W~~~~~~~~~~~~~tssP~v~~g~Vivg 171 (527)
T TIGR03075 115 GVALYDGKVFFGTLD----ARLVALDAKTG-KVVWSKKNGDYKAGYTITAAPLVVKGKVITG 171 (527)
T ss_pred cceEECCEEEEEcCC----CEEEEEECCCC-CEEeecccccccccccccCCcEEECCEEEEe
Confidence 445667888775332 46788998732 4458653221221111122334458888874
No 128
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=36.12 E-value=4.1e+02 Score=28.97 Aligned_cols=136 Identities=15% Similarity=0.149 Sum_probs=71.5
Q ss_pred eEEEEECCCCcEEeCcCCCcccccCCeecCCCcEEEEcCCCCCCCeEEEEcCCCCCCCccc---ccCcccccccCcceEE
Q 048017 110 HSVLYDIASNTFRPLLLQTDTWCSSGAVLSDGTLVQTGGYNVGDRVIRLFTPCNDEGCDWV---ELSKNLWDRRWYASNQ 186 (566)
Q Consensus 110 ~~~~yDp~t~~w~~l~~~~~~~c~~~~~l~dG~l~vvGG~~~g~~~v~~ydP~~~~t~~W~---~~~~~M~~~R~y~s~~ 186 (566)
.+.+||..+.+-...-..+.....+..+-.||.+++++.++ ..+++||.. +..-. .+.. ...+. -.+.+
T Consensus 269 tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d---~~i~vwd~~---~~~~~~~~~~~~-~~~~~-~~~~~ 340 (456)
T KOG0266|consen 269 TVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYD---GTIRVWDLE---TGSKLCLKLLSG-AENSA-PVTSV 340 (456)
T ss_pred cEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCC---ccEEEEECC---CCceeeeecccC-CCCCC-ceeEE
Confidence 47788888866655544455555566677899999999653 678999987 43311 2222 22222 12233
Q ss_pred E-ecCCcEEEEcCccCCeEEEE-eCCC-CCCCeeeeccccccCCCCCCCCccceEEEecCCcEEEEEcCe--eEEEeccC
Q 048017 187 I-LPDNRIIVVGGRRVFTYEFY-PKID-SLSSSLYLRFLIETRDPGEENNLYPFLHLLPDGNLFIFANRR--SILFDYIN 261 (566)
Q Consensus 187 ~-L~dG~VyvvGG~~~~s~E~y-P~~~-~~~~w~~~p~l~~~~d~~~~~~~yp~~~~l~~G~Ifv~Gg~~--~e~yDp~t 261 (566)
. -+||+.++++..+. .+-.| .... ....+...... .+ ..+ ......+|+..+.|..+ +.+||+.+
T Consensus 341 ~fsp~~~~ll~~~~d~-~~~~w~l~~~~~~~~~~~~~~~-~~-------~~~-~~~~~~~~~~i~sg~~d~~v~~~~~~s 410 (456)
T KOG0266|consen 341 QFSPNGKYLLSASLDR-TLKLWDLRSGKSVGTYTGHSNL-VR-------CIF-SPTLSTGGKLIYSGSEDGSVYVWDSSS 410 (456)
T ss_pred EECCCCcEEEEecCCC-eEEEEEccCCcceeeecccCCc-ce-------eEe-cccccCCCCeEEEEeCCceEEEEeCCc
Confidence 3 36777777776542 33333 1110 00011100100 00 001 11224578888888754 67788887
Q ss_pred Ce
Q 048017 262 NK 263 (566)
Q Consensus 262 ~~ 263 (566)
..
T Consensus 411 ~~ 412 (456)
T KOG0266|consen 411 GG 412 (456)
T ss_pred cc
Confidence 43
No 129
>PRK05137 tolB translocation protein TolB; Provisional
Probab=35.79 E-value=5.9e+02 Score=27.40 Aligned_cols=82 Identities=16% Similarity=0.120 Sum_probs=47.1
Q ss_pred eEEEEECCCCcEEeCcCCCcccccCCeecCCCcEEEEcCCCCCCCeEEEEcCCCCCCCcccccCcccccccCcceEEEec
Q 048017 110 HSVLYDIASNTFRPLLLQTDTWCSSGAVLSDGTLVQTGGYNVGDRVIRLFTPCNDEGCDWVELSKNLWDRRWYASNQILP 189 (566)
Q Consensus 110 ~~~~yDp~t~~w~~l~~~~~~~c~~~~~l~dG~l~vvGG~~~g~~~v~~ydP~~~~t~~W~~~~~~M~~~R~y~s~~~L~ 189 (566)
...++|.++++.+.+..... ........+||+-+++.....+...++++|.. +.+.+.+.. ....+.....-+
T Consensus 271 ~Iy~~d~~~~~~~~Lt~~~~-~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~---g~~~~~lt~---~~~~~~~~~~Sp 343 (435)
T PRK05137 271 DIYTMDLRSGTTTRLTDSPA-IDTSPSYSPDGSQIVFESDRSGSPQLYVMNAD---GSNPRRISF---GGGRYSTPVWSP 343 (435)
T ss_pred eEEEEECCCCceEEccCCCC-ccCceeEcCCCCEEEEEECCCCCCeEEEEECC---CCCeEEeec---CCCcccCeEECC
Confidence 46677999988887764321 11234566899866665443455678888876 444444322 122233334446
Q ss_pred CCcEEEEcC
Q 048017 190 DNRIIVVGG 198 (566)
Q Consensus 190 dG~VyvvGG 198 (566)
||+.+++..
T Consensus 344 dG~~ia~~~ 352 (435)
T PRK05137 344 RGDLIAFTK 352 (435)
T ss_pred CCCEEEEEE
Confidence 887766544
No 130
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=35.36 E-value=4.9e+02 Score=26.38 Aligned_cols=53 Identities=21% Similarity=0.305 Sum_probs=32.3
Q ss_pred ccceEEEEECCCCcEEeCcCC--CcccccCCeecCCCcEEEEcCCCCCCCeEEEEcCC
Q 048017 107 CTAHSVLYDIASNTFRPLLLQ--TDTWCSSGAVLSDGTLVQTGGYNVGDRVIRLFTPC 162 (566)
Q Consensus 107 ~~~~~~~yDp~t~~w~~l~~~--~~~~c~~~~~l~dG~l~vvGG~~~g~~~v~~ydP~ 162 (566)
++.++.+||..++.=.++... +..--.+..+-.||+.+..||.+ -.++++|-.
T Consensus 59 ~~qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseD---gt~kIWdlR 113 (311)
T KOG0315|consen 59 GNQHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSED---GTVKIWDLR 113 (311)
T ss_pred cCCeeEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEEecCCC---ceEEEEecc
Confidence 345799999998764333221 11111123344699999999964 357778765
No 131
>KOG1427 consensus Uncharacterized conserved protein, contains RCC1 domain [Function unknown]
Probab=35.33 E-value=1.5e+02 Score=30.69 Aligned_cols=137 Identities=17% Similarity=0.133 Sum_probs=81.0
Q ss_pred cceeEEccCCeEEEEcCCCCCCCCCcc---ccCc----CCcEEeccCCCCCCcceeEEEEcCCCcEEEecCCCCcccccC
Q 048017 359 MSDMLLLPSGDVIIINGASNGTAGWED---AEEP----DRRFVVLNPSKIPRMYHSSAVVLPDGRILVGGSNPHRRYNFT 431 (566)
Q Consensus 359 ~~~~vvLpdG~V~vvGG~~~g~~~~~~---~ydP----t~~Wt~~~~~~~~R~yhs~a~LlpdG~V~v~GG~~~~~~~~~ 431 (566)
.|+..+-.+||.|-.|=..+|.-+..+ +--| +-.=..+-.....| |.+.+|.-+|.||..|=|--+.+...
T Consensus 68 aH~vli~megk~~~wGRNekGQLGhgD~k~~e~Ptvi~gL~~~~iv~AA~Gr--nHTl~ltdtG~v~afGeNK~GQlGlg 145 (443)
T KOG1427|consen 68 AHCVLIDMEGKCYTWGRNEKGQLGHGDMKQRERPTVISGLSKHKIVKAAAGR--NHTLVLTDTGQVLAFGENKYGQLGLG 145 (443)
T ss_pred hhEEEEecccceeecccCccCccCccchhhccCCchhhhhhhhhHHHHhhcc--CcEEEEecCCcEEEeccccccccccc
Confidence 455555568888888755444322222 1223 10000111222334 34777888999999998765544321
Q ss_pred CCCCCCcceEEEEeccccCCCCCCCCCceeecCCccceeecCCeEEEEEEecCCCCCcceEEEEEccCccccCC----CC
Q 048017 432 AYPYPTDLSLEAFHPHYLDPENAYMRPSILSLESIDRTVSYNEVFAVTFELSSYSPSGEISVSLMTPSFTTHSF----AM 507 (566)
Q Consensus 432 ~~~~~~~~~vE~y~Ppyl~~~~~~~RP~i~~~p~~~~~~~~g~~~~v~~~~~~~~~~~~~~v~l~~~~~~THs~----n~ 507 (566)
....|+|+||-..-- -| |. ..|..|..|+|-++... .+..+-|-..|---|.. ||
T Consensus 146 ------n~~~~v~s~~~~~~~----~~-----~v--~~v~cga~ftv~l~~~~----si~t~glp~ygqlgh~td~~~~~ 204 (443)
T KOG1427|consen 146 ------NAKNEVESTPLPCVV----SD-----EV--TNVACGADFTVWLSSTE----SILTAGLPQYGQLGHGTDNEFNM 204 (443)
T ss_pred ------ccccccccCCCcccc----Cc-----cc--eeeccccceEEEeeccc----ceeecCCccccccccCcchhhcc
Confidence 223589998876421 12 21 44677999999887432 57777787777777775 67
Q ss_pred CcceEEeeeee
Q 048017 508 NQRLVVLNVVS 518 (566)
Q Consensus 508 ~QR~v~L~~~~ 518 (566)
+.-.|.|.|..
T Consensus 205 ~~~~~~~~~e~ 215 (443)
T KOG1427|consen 205 KDSSVRLAYEA 215 (443)
T ss_pred ccccceeeeec
Confidence 77777777754
No 132
>PRK01029 tolB translocation protein TolB; Provisional
Probab=35.14 E-value=1.8e+02 Score=31.56 Aligned_cols=60 Identities=13% Similarity=0.027 Sum_probs=38.7
Q ss_pred ceEEEEECCCCcEEeCcCCCcccccCCeecCCCcEEEEcCCCCCCCeEEEEcCCCCCCCccccc
Q 048017 109 AHSVLYDIASNTFRPLLLQTDTWCSSGAVLSDGTLVQTGGYNVGDRVIRLFTPCNDEGCDWVEL 172 (566)
Q Consensus 109 ~~~~~yDp~t~~w~~l~~~~~~~c~~~~~l~dG~l~vvGG~~~g~~~v~~ydP~~~~t~~W~~~ 172 (566)
....+||+.+++.+.+... ..........+||+.+++-....+...+..+|.. +.+.+.+
T Consensus 351 ~~I~v~dl~~g~~~~Lt~~-~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~---~g~~~~L 410 (428)
T PRK01029 351 RQICVYDLATGRDYQLTTS-PENKESPSWAIDSLHLVYSAGNSNESELYLISLI---TKKTRKI 410 (428)
T ss_pred cEEEEEECCCCCeEEccCC-CCCccceEECCCCCEEEEEECCCCCceEEEEECC---CCCEEEe
Confidence 3578899999999888643 2223445667899866654433345677788876 5555544
No 133
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=34.53 E-value=5.5e+02 Score=26.70 Aligned_cols=101 Identities=19% Similarity=0.369 Sum_probs=51.6
Q ss_pred EEec-CCcEEEEEc---CeeEEEeccCCeEEEeecccCCCCCCccCCCCceeeecccccCCCCCCCCCCCCCCEEEEEcC
Q 048017 239 HLLP-DGNLFIFAN---RRSILFDYINNKLVKEFPVIPGNDKRNYPSTGSSILLPVKLSAGSDGNGTAALPDAEVMVCGG 314 (566)
Q Consensus 239 ~~l~-~G~Ifv~Gg---~~~e~yDp~t~~W~~~~p~lp~~~~r~~~~~g~avllpl~~~~~~~~~~y~~~~~gkI~v~GG 314 (566)
.+.| ++.+.+|+- .-..+||+.+++-.+.+.+ |. .|.+ -|-++..+ +|+.+..==
T Consensus 11 a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a-~~--gRHF--yGHg~fs~----------------dG~~LytTE 69 (305)
T PF07433_consen 11 AAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWA-PP--GRHF--YGHGVFSP----------------DGRLLYTTE 69 (305)
T ss_pred eeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcC-CC--CCEE--ecCEEEcC----------------CCCEEEEec
Confidence 3345 455666664 3467899999876654542 22 2543 24455422 455554321
Q ss_pred CCCCccccccccccccccCCeeEEEEeeCCCCCeEEe-ccC-CCcccceeEEccCC-eEEEEcC
Q 048017 315 APAGAFIKSDKESVYVEASRTCGRLKVTDKYPVWSME-FMP-MPRVMSDMLLLPSG-DVIIING 375 (566)
Q Consensus 315 ~~~~~~~~~~~~~~~~pa~~s~~~~d~~~~~~~W~~~-~M~-~~R~~~~~vvLpdG-~V~vvGG 375 (566)
+.+. ....-+.+||.. ..++.. ..+ ..-.=|...++||| ++.|.+|
T Consensus 70 ---nd~~---------~g~G~IgVyd~~---~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANG 118 (305)
T PF07433_consen 70 ---NDYE---------TGRGVIGVYDAA---RGYRRIGEFPSHGIGPHELLLMPDGETLVVANG 118 (305)
T ss_pred ---cccC---------CCcEEEEEEECc---CCcEEEeEecCCCcChhhEEEcCCCCEEEEEcC
Confidence 1121 112234556654 344443 222 23344778899999 5555555
No 134
>PF00868 Transglut_N: Transglutaminase family; InterPro: IPR001102 Synonym(s): Protein-glutamine gamma-glutamyltransferase, Fibrinoligase, TGase Protein-glutamine gamma-glutamyltransferases (2.3.2.13 from EC) (TGase) are calcium-dependent enzymes that catalyse the cross-linking of proteins by promoting the formation of isopeptide bonds between the gamma-carboxyl group of a glutamine in one polypeptide chain and the epsilon-amino group of a lysine in a second polypeptide chain. TGases also catalyse the conjugation of polyamines to proteins [, ]. Transglutaminases are widely distributed in various organs, tissues and body fluids. The best known transglutaminase is blood coagulation factor XIII, a plasma tetrameric protein composed of two catalytic A subunits and two non-catalytic B subunits. Factor XIII is responsible for cross-linking fibrin chains, thus stabilising the fibrin clot. There are commonly three domains: N-terminal, middle (IPR013808 from INTERPRO) and C-terminal (IPR013807 from INTERPRO). This entry represents the N-terminal domain found in transglutaminases.; GO: 0018149 peptide cross-linking; PDB: 1L9N_B 1NUF_A 1NUD_A 1NUG_B 1L9M_A 1KV3_C 3S3S_A 2Q3Z_A 3LY6_A 3S3P_A ....
Probab=34.42 E-value=3.2e+02 Score=23.96 Aligned_cols=76 Identities=28% Similarity=0.301 Sum_probs=36.3
Q ss_pred ceeecCCeEEEEEEecCC-CCCcceEEEEEc-cCccccCCCCCcceEEeeeeee-----------eecccceEEEEEEcC
Q 048017 468 RTVSYNEVFAVTFELSSY-SPSGEISVSLMT-PSFTTHSFAMNQRLVVLNVVSV-----------SQLSVYAYKVVVNGP 534 (566)
Q Consensus 468 ~~~~~g~~~~v~~~~~~~-~~~~~~~v~l~~-~~~~THs~n~~QR~v~L~~~~~-----------~~~g~~~~~~~v~~P 534 (566)
-.|..||+|+|++....+ .. ....+.|+- .| .-=+..-+- .+.|++... .+.| +.-++.|+.|
T Consensus 27 LVVRRGQ~F~i~l~f~r~~~~-~~d~l~l~~~~G-~~P~~~~gT-~~~~~~~~~~~~~~W~a~v~~~~~-~~~tv~V~sp 102 (118)
T PF00868_consen 27 LVVRRGQPFTITLRFNRPFDP-SKDQLSLEFETG-PNPSESKGT-KVVFPVSSSLDSSSWSARVESQDG-NSVTVSVTSP 102 (118)
T ss_dssp EEEETTSEEEEEEEESSS--T-TTEEEEEEEEES-SS--TTTTS-EEEEEECSSS-TSSSEEEEEEEET-TEEEEEEE--
T ss_pred EEEECCCEEEEEEEEcCCcCC-CCcEEEEEEEEe-cccccCCCc-EEEEEEccCCCCCCEEEEEEecCC-CEEEEEEECC
Confidence 347889999999887665 22 334444432 12 000111111 233333110 1223 3467778888
Q ss_pred CCCCcCCCcceEEEEE
Q 048017 535 PTATVAPPGYYMMFVV 550 (566)
Q Consensus 535 ~~~~~~ppG~ymlfv~ 550 (566)
+|+ |=|.|-|-|-
T Consensus 103 a~A---~VG~y~l~v~ 115 (118)
T PF00868_consen 103 ANA---PVGRYKLSVE 115 (118)
T ss_dssp TTS-----EEEEEEEE
T ss_pred CCC---ceEEEEEEEE
Confidence 874 5599988764
No 135
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=32.13 E-value=3.7e+02 Score=33.05 Aligned_cols=65 Identities=14% Similarity=0.188 Sum_probs=36.2
Q ss_pred eecCCCcEEEEcCCCCCCCeEEEEcCCCCCCCcccccCc----------ccccccCcc-eEEEecCCcEEEEcCccCCeE
Q 048017 136 AVLSDGTLVQTGGYNVGDRVIRLFTPCNDEGCDWVELSK----------NLWDRRWYA-SNQILPDNRIIVVGGRRVFTY 204 (566)
Q Consensus 136 ~~l~dG~l~vvGG~~~g~~~v~~ydP~~~~t~~W~~~~~----------~M~~~R~y~-s~~~L~dG~VyvvGG~~~~s~ 204 (566)
++..+|.|||+-.. ...|++||+. +.....+.. .....-..| +++.-+||++||.-..++ .+
T Consensus 810 avd~dG~LYVADs~---N~rIrviD~~---tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn-~I 882 (1057)
T PLN02919 810 LCAKDGQIYVADSY---NHKIKKLDPA---TKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNS-LI 882 (1057)
T ss_pred eEeCCCcEEEEECC---CCEEEEEECC---CCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCC-EE
Confidence 44568899998643 3679999997 444432221 000001123 344456899998765443 34
Q ss_pred EEE
Q 048017 205 EFY 207 (566)
Q Consensus 205 E~y 207 (566)
.++
T Consensus 883 rvi 885 (1057)
T PLN02919 883 RYL 885 (1057)
T ss_pred EEE
Confidence 444
No 136
>PRK04922 tolB translocation protein TolB; Provisional
Probab=31.92 E-value=5.4e+02 Score=27.67 Aligned_cols=81 Identities=12% Similarity=0.116 Sum_probs=46.5
Q ss_pred eEEEEECCCCcEEeCcCCCcccccCCeecCCCcEEEEcCCCCCCCeEEEEcCCCCCCCcccccCcccccccCcceEEEec
Q 048017 110 HSVLYDIASNTFRPLLLQTDTWCSSGAVLSDGTLVQTGGYNVGDRVIRLFTPCNDEGCDWVELSKNLWDRRWYASNQILP 189 (566)
Q Consensus 110 ~~~~yDp~t~~w~~l~~~~~~~c~~~~~l~dG~l~vvGG~~~g~~~v~~ydP~~~~t~~W~~~~~~M~~~R~y~s~~~L~ 189 (566)
....+|..+++.+.+... ...+......+||+.+++....++...+.++|.. +.+.+.+.. ..+......-+
T Consensus 317 ~iy~~dl~~g~~~~lt~~-g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~---~g~~~~Lt~----~~~~~~p~~sp 388 (433)
T PRK04922 317 QIYRVAASGGSAERLTFQ-GNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLS---TGSVRTLTP----GSLDESPSFAP 388 (433)
T ss_pred eEEEEECCCCCeEEeecC-CCCccCEEECCCCCEEEEEECCCCceeEEEEECC---CCCeEECCC----CCCCCCceECC
Confidence 456667778887776532 2233345667788876664333344578899987 566654432 11212233456
Q ss_pred CCcEEEEcC
Q 048017 190 DNRIIVVGG 198 (566)
Q Consensus 190 dG~VyvvGG 198 (566)
||+.++...
T Consensus 389 dG~~i~~~s 397 (433)
T PRK04922 389 NGSMVLYAT 397 (433)
T ss_pred CCCEEEEEE
Confidence 888666544
No 137
>PRK00178 tolB translocation protein TolB; Provisional
Probab=31.58 E-value=6.6e+02 Score=26.77 Aligned_cols=138 Identities=12% Similarity=0.047 Sum_probs=69.5
Q ss_pred eEEEEECCCCcEEeCcCCCcccccCCeecCCCcEEEEcCCCCCCCeEEEEcCCCCCCCcccccCcccccccCcceEEEec
Q 048017 110 HSVLYDIASNTFRPLLLQTDTWCSSGAVLSDGTLVQTGGYNVGDRVIRLFTPCNDEGCDWVELSKNLWDRRWYASNQILP 189 (566)
Q Consensus 110 ~~~~yDp~t~~w~~l~~~~~~~c~~~~~l~dG~l~vvGG~~~g~~~v~~ydP~~~~t~~W~~~~~~M~~~R~y~s~~~L~ 189 (566)
...++|..+++-+.+...... -......+||+-+++.-..++...++++|.. +.+.+.+.. -. ........-+
T Consensus 224 ~l~~~~l~~g~~~~l~~~~g~-~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~---~~~~~~lt~-~~--~~~~~~~~sp 296 (430)
T PRK00178 224 RIFVQNLDTGRREQITNFEGL-NGAPAWSPDGSKLAFVLSKDGNPEIYVMDLA---SRQLSRVTN-HP--AIDTEPFWGK 296 (430)
T ss_pred EEEEEECCCCCEEEccCCCCC-cCCeEECCCCCEEEEEEccCCCceEEEEECC---CCCeEEccc-CC--CCcCCeEECC
Confidence 467889999888877643211 1234566798766554333445678889988 666655443 11 0111223345
Q ss_pred CCcEEEEcCccCCeEEEE--eCCCCCCCeeeeccccccCCCCCCCCccceEEEecCCcEEEEEcC-----eeEEEeccCC
Q 048017 190 DNRIIVVGGRRVFTYEFY--PKIDSLSSSLYLRFLIETRDPGEENNLYPFLHLLPDGNLFIFANR-----RSILFDYINN 262 (566)
Q Consensus 190 dG~VyvvGG~~~~s~E~y--P~~~~~~~w~~~p~l~~~~d~~~~~~~yp~~~~l~~G~Ifv~Gg~-----~~e~yDp~t~ 262 (566)
||+-+++........++| .... ..+..+... . ..+......+||+..++... ...++|..++
T Consensus 297 Dg~~i~f~s~~~g~~~iy~~d~~~--g~~~~lt~~-~--------~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg 365 (430)
T PRK00178 297 DGRTLYFTSDRGGKPQIYKVNVNG--GRAERVTFV-G--------NYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRG 365 (430)
T ss_pred CCCEEEEEECCCCCceEEEEECCC--CCEEEeecC-C--------CCccceEECCCCCEEEEEEccCCceEEEEEECCCC
Confidence 776444332222222344 3211 122222110 0 01112234678876655432 3567888887
Q ss_pred eEE
Q 048017 263 KLV 265 (566)
Q Consensus 263 ~W~ 265 (566)
++.
T Consensus 366 ~~~ 368 (430)
T PRK00178 366 SVR 368 (430)
T ss_pred CEE
Confidence 765
No 138
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=31.58 E-value=4.6e+02 Score=27.18 Aligned_cols=87 Identities=15% Similarity=0.203 Sum_probs=47.6
Q ss_pred eEEEEECCCCcEEeCcCCC-cccccCCeecCCCcEEEEcCCCCCCCeEEEEcCCCCCCCcc--cccCcccccc-cCcceE
Q 048017 110 HSVLYDIASNTFRPLLLQT-DTWCSSGAVLSDGTLVQTGGYNVGDRVIRLFTPCNDEGCDW--VELSKNLWDR-RWYASN 185 (566)
Q Consensus 110 ~~~~yDp~t~~w~~l~~~~-~~~c~~~~~l~dG~l~vvGG~~~g~~~v~~ydP~~~~t~~W--~~~~~~M~~~-R~y~s~ 185 (566)
.+.+|||....-.-..... ..+| .-..|..+++|+.+ +.+.+||.. ...- +.-...+... | ++
T Consensus 117 ~ik~wD~R~~~~~~~~d~~kkVy~----~~v~g~~LvVg~~~---r~v~iyDLR---n~~~~~q~reS~lkyqtR---~v 183 (323)
T KOG1036|consen 117 TIKFWDPRNKVVVGTFDQGKKVYC----MDVSGNRLVVGTSD---RKVLIYDLR---NLDEPFQRRESSLKYQTR---CV 183 (323)
T ss_pred cEEEEeccccccccccccCceEEE----EeccCCEEEEeecC---ceEEEEEcc---cccchhhhccccceeEEE---EE
Confidence 3678888752111111111 2233 22467888888754 688899987 2221 1111113322 3 35
Q ss_pred EEecCCcEEEEcCccCC-eEEEE-eC
Q 048017 186 QILPDNRIIVVGGRRVF-TYEFY-PK 209 (566)
Q Consensus 186 ~~L~dG~VyvvGG~~~~-s~E~y-P~ 209 (566)
+.++++.=|++|-.++. .+|++ +.
T Consensus 184 ~~~pn~eGy~~sSieGRVavE~~d~s 209 (323)
T KOG1036|consen 184 ALVPNGEGYVVSSIEGRVAVEYFDDS 209 (323)
T ss_pred EEecCCCceEEEeecceEEEEccCCc
Confidence 66778888888876664 57777 44
No 139
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=31.54 E-value=5.3e+02 Score=27.35 Aligned_cols=36 Identities=11% Similarity=0.114 Sum_probs=24.4
Q ss_pred ccceEEEecCCc-EEEEEc-----------CeeEEEeccCCeEEEeec
Q 048017 234 LYPFLHLLPDGN-LFIFAN-----------RRSILFDYINNKLVKEFP 269 (566)
Q Consensus 234 ~yp~~~~l~~G~-Ifv~Gg-----------~~~e~yDp~t~~W~~~~p 269 (566)
..|+..+.+||+ ||+... ...++||.++.+-...++
T Consensus 47 ~~P~~~~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~ 94 (352)
T TIGR02658 47 FLPNPVVASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIE 94 (352)
T ss_pred CCCceeECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEc
Confidence 345555677877 555444 247899999998776554
No 140
>PRK02889 tolB translocation protein TolB; Provisional
Probab=30.68 E-value=7e+02 Score=26.78 Aligned_cols=137 Identities=19% Similarity=0.197 Sum_probs=67.6
Q ss_pred eEEEEECCCCcEEeCcCCCcccccCCeecCCCcEEEEcCCCCCCCeEEEEcCCCCCCCcccccCcccccccC-cceEEEe
Q 048017 110 HSVLYDIASNTFRPLLLQTDTWCSSGAVLSDGTLVQTGGYNVGDRVIRLFTPCNDEGCDWVELSKNLWDRRW-YASNQIL 188 (566)
Q Consensus 110 ~~~~yDp~t~~w~~l~~~~~~~c~~~~~l~dG~l~vvGG~~~g~~~v~~ydP~~~~t~~W~~~~~~M~~~R~-y~s~~~L 188 (566)
...+||..+++-+.+..... .-......+||+-+++....++...++.+|.. +...+.+.. ... .....--
T Consensus 221 ~I~~~dl~~g~~~~l~~~~g-~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~---~~~~~~lt~----~~~~~~~~~wS 292 (427)
T PRK02889 221 VVYVHDLATGRRRVVANFKG-SNSAPAWSPDGRTLAVALSRDGNSQIYTVNAD---GSGLRRLTQ----SSGIDTEPFFS 292 (427)
T ss_pred EEEEEECCCCCEEEeecCCC-CccceEECCCCCEEEEEEccCCCceEEEEECC---CCCcEECCC----CCCCCcCeEEc
Confidence 46788998887666643221 11245667899766554333455677777776 444443322 111 1123345
Q ss_pred cCCcEEEEcCccCCeEEEE--eCCCCCCCeeeeccccccCCCCCCCCccceEEEecCCcEEEEEcC-----eeEEEeccC
Q 048017 189 PDNRIIVVGGRRVFTYEFY--PKIDSLSSSLYLRFLIETRDPGEENNLYPFLHLLPDGNLFIFANR-----RSILFDYIN 261 (566)
Q Consensus 189 ~dG~VyvvGG~~~~s~E~y--P~~~~~~~w~~~p~l~~~~d~~~~~~~yp~~~~l~~G~Ifv~Gg~-----~~e~yDp~t 261 (566)
+||+-+++........++| +... .......+ ... .+. .....+||+..++... ...++|..+
T Consensus 293 pDG~~l~f~s~~~g~~~Iy~~~~~~--g~~~~lt~-~g~------~~~--~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~ 361 (427)
T PRK02889 293 PDGRSIYFTSDRGGAPQIYRMPASG--GAAQRVTF-TGS------YNT--SPRISPDGKLLAYISRVGGAFKLYVQDLAT 361 (427)
T ss_pred CCCCEEEEEecCCCCcEEEEEECCC--CceEEEec-CCC------CcC--ceEECCCCCEEEEEEccCCcEEEEEEECCC
Confidence 6887555433222223455 3221 12221111 000 111 1234678886655432 356778877
Q ss_pred CeEE
Q 048017 262 NKLV 265 (566)
Q Consensus 262 ~~W~ 265 (566)
++..
T Consensus 362 g~~~ 365 (427)
T PRK02889 362 GQVT 365 (427)
T ss_pred CCeE
Confidence 7654
No 141
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=30.63 E-value=3.7e+02 Score=31.29 Aligned_cols=81 Identities=15% Similarity=0.243 Sum_probs=47.0
Q ss_pred eEEEEECCCCcEEeCcCCCcccccCCeecCCCcEEEEcCCCCCCCeEEEEcCCCCCCCcccccCcccccccCcceEEEec
Q 048017 110 HSVLYDIASNTFRPLLLQTDTWCSSGAVLSDGTLVQTGGYNVGDRVIRLFTPCNDEGCDWVELSKNLWDRRWYASNQILP 189 (566)
Q Consensus 110 ~~~~yDp~t~~w~~l~~~~~~~c~~~~~l~dG~l~vvGG~~~g~~~v~~ydP~~~~t~~W~~~~~~M~~~R~y~s~~~L~ 189 (566)
..-+|+.+|++-..+-.-++.--++-++-++|.+++.|-|+ ++|+++|-- .+|..+.. +....---+++.-|
T Consensus 459 ~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWD---kTVRiW~if----~s~~~vEt-l~i~sdvl~vsfrP 530 (893)
T KOG0291|consen 459 EIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWD---KTVRIWDIF----SSSGTVET-LEIRSDVLAVSFRP 530 (893)
T ss_pred EEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEecccc---ceEEEEEee----ccCceeee-EeeccceeEEEEcC
Confidence 45678888887766544443322334556789999999886 678887764 34544433 33333222333334
Q ss_pred CCcEEEEcC
Q 048017 190 DNRIIVVGG 198 (566)
Q Consensus 190 dG~VyvvGG 198 (566)
||+=+++--
T Consensus 531 dG~elaVaT 539 (893)
T KOG0291|consen 531 DGKELAVAT 539 (893)
T ss_pred CCCeEEEEE
Confidence 565555443
No 142
>PTZ00420 coronin; Provisional
Probab=30.21 E-value=3.7e+02 Score=30.56 Aligned_cols=53 Identities=13% Similarity=0.135 Sum_probs=28.5
Q ss_pred eEEEEECCCCcEEeCcCCCcc----cc-cCCeecCCCcEEEEcCCCC-CCCeEEEEcCC
Q 048017 110 HSVLYDIASNTFRPLLLQTDT----WC-SSGAVLSDGTLVQTGGYNV-GDRVIRLFTPC 162 (566)
Q Consensus 110 ~~~~yDp~t~~w~~l~~~~~~----~c-~~~~~l~dG~l~vvGG~~~-g~~~v~~ydP~ 162 (566)
.+.+||+.+++-..--..+.. .+ ....+-.|+..++++|.++ ..+.+.+||..
T Consensus 190 ~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr 248 (568)
T PTZ00420 190 HMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLK 248 (568)
T ss_pred EEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECC
Confidence 478899988653221111111 00 0001125777777777653 34689999987
No 143
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=29.87 E-value=2e+02 Score=33.17 Aligned_cols=88 Identities=13% Similarity=0.191 Sum_probs=50.4
Q ss_pred eEEEEECCCCcEEeCcCCCcccccCCeecCCCcEEEEcCCCCCCCeEEEEcCCCCCCCcccccCcccccccCc-ceEEEe
Q 048017 110 HSVLYDIASNTFRPLLLQTDTWCSSGAVLSDGTLVQTGGYNVGDRVIRLFTPCNDEGCDWVELSKNLWDRRWY-ASNQIL 188 (566)
Q Consensus 110 ~~~~yDp~t~~w~~l~~~~~~~c~~~~~l~dG~l~vvGG~~~g~~~v~~ydP~~~~t~~W~~~~~~M~~~R~y-~s~~~L 188 (566)
.+.+||..++.-..+=.-+...-.+-++-++|+-++.|+.. ..+.+||-. +.+- +.. |..-..- .+...-
T Consensus 558 tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed---~~I~iWDl~---~~~~--v~~-l~~Ht~ti~SlsFS 628 (707)
T KOG0263|consen 558 TVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDED---GLIKIWDLA---NGSL--VKQ-LKGHTGTIYSLSFS 628 (707)
T ss_pred eEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccC---CcEEEEEcC---CCcc--hhh-hhcccCceeEEEEe
Confidence 47888888877655433222222234455799999999864 467888876 3221 111 2222111 112222
Q ss_pred cCCcEEEEcCccCCeEEEE
Q 048017 189 PDNRIIVVGGRRVFTYEFY 207 (566)
Q Consensus 189 ~dG~VyvvGG~~~~s~E~y 207 (566)
.||.|+|+||.++ ++.+|
T Consensus 629 ~dg~vLasgg~Dn-sV~lW 646 (707)
T KOG0263|consen 629 RDGNVLASGGADN-SVRLW 646 (707)
T ss_pred cCCCEEEecCCCC-eEEEE
Confidence 3999999999874 34444
No 144
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=29.30 E-value=1.6e+02 Score=28.00 Aligned_cols=79 Identities=13% Similarity=0.154 Sum_probs=44.7
Q ss_pred eEEEEECCCCcEEeCcCCCcccccCCeecCCCcEEEEcCCCCCCCeEEEEcCCCCCCCcccccCcccccccCcceEEEec
Q 048017 110 HSVLYDIASNTFRPLLLQTDTWCSSGAVLSDGTLVQTGGYNVGDRVIRLFTPCNDEGCDWVELSKNLWDRRWYASNQILP 189 (566)
Q Consensus 110 ~~~~yDp~t~~w~~l~~~~~~~c~~~~~l~dG~l~vvGG~~~g~~~v~~ydP~~~~t~~W~~~~~~M~~~R~y~s~~~L~ 189 (566)
.+.+||.+...-..+.. ........-++|+.+++||..+....+++||.. ++..+.. ..... -..+.--+
T Consensus 84 ~v~lyd~~~~~i~~~~~---~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~-----~~~~i~~-~~~~~-~t~~~WsP 153 (194)
T PF08662_consen 84 KVTLYDVKGKKIFSFGT---QPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVR-----KKKKIST-FEHSD-ATDVEWSP 153 (194)
T ss_pred ccEEEcCcccEeEeecC---CCceEEEECCCCCEEEEEEccCCCcEEEEEECC-----CCEEeec-cccCc-EEEEEEcC
Confidence 46789987444444332 111234455899999999976434578999976 3333332 22221 11122235
Q ss_pred CCcEEEEcC
Q 048017 190 DNRIIVVGG 198 (566)
Q Consensus 190 dG~VyvvGG 198 (566)
||+.++...
T Consensus 154 dGr~~~ta~ 162 (194)
T PF08662_consen 154 DGRYLATAT 162 (194)
T ss_pred CCCEEEEEE
Confidence 888887654
No 145
>PRK00178 tolB translocation protein TolB; Provisional
Probab=27.99 E-value=7.6e+02 Score=26.31 Aligned_cols=82 Identities=9% Similarity=0.050 Sum_probs=47.7
Q ss_pred eEEEEECCCCcEEeCcCCCcccccCCeecCCCcEEEEcCCCCCCCeEEEEcCCCCCCCcccccCcccccccCcceEEEec
Q 048017 110 HSVLYDIASNTFRPLLLQTDTWCSSGAVLSDGTLVQTGGYNVGDRVIRLFTPCNDEGCDWVELSKNLWDRRWYASNQILP 189 (566)
Q Consensus 110 ~~~~yDp~t~~w~~l~~~~~~~c~~~~~l~dG~l~vvGG~~~g~~~v~~ydP~~~~t~~W~~~~~~M~~~R~y~s~~~L~ 189 (566)
....+|..+++++.+.... ..+......+||+.+++-...++...+.++|.. +.+++.+.. -. +......-+
T Consensus 312 ~iy~~d~~~g~~~~lt~~~-~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~---tg~~~~lt~-~~---~~~~p~~sp 383 (430)
T PRK00178 312 QIYKVNVNGGRAERVTFVG-NYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQ---RGSVRILTD-TS---LDESPSVAP 383 (430)
T ss_pred eEEEEECCCCCEEEeecCC-CCccceEECCCCCEEEEEEccCCceEEEEEECC---CCCEEEccC-CC---CCCCceECC
Confidence 4667788888887775321 223334566788877665543444568889988 666655443 11 111223345
Q ss_pred CCcEEEEcCc
Q 048017 190 DNRIIVVGGR 199 (566)
Q Consensus 190 dG~VyvvGG~ 199 (566)
||+.++....
T Consensus 384 dg~~i~~~~~ 393 (430)
T PRK00178 384 NGTMLIYATR 393 (430)
T ss_pred CCCEEEEEEe
Confidence 8887776543
No 146
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=27.23 E-value=3.7e+02 Score=26.99 Aligned_cols=90 Identities=12% Similarity=0.132 Sum_probs=52.7
Q ss_pred ceEEEEECCCCcEEeCcCCCcccccCCeecCCCcEEEEcCCCCCCCeEEEEcCCCCCCCcccccCcccccccCcceEEEe
Q 048017 109 AHSVLYDIASNTFRPLLLQTDTWCSSGAVLSDGTLVQTGGYNVGDRVIRLFTPCNDEGCDWVELSKNLWDRRWYASNQIL 188 (566)
Q Consensus 109 ~~~~~yDp~t~~w~~l~~~~~~~c~~~~~l~dG~l~vvGG~~~g~~~v~~ydP~~~~t~~W~~~~~~M~~~R~y~s~~~L 188 (566)
..+.+||.+|++...----+...-....+--+-.|++.|+++ .++++||-. +.+..++.- +.+.+-.-+++.+
T Consensus 81 k~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD---~s~r~wDCR---S~s~ePiQi-ldea~D~V~Si~v 153 (307)
T KOG0316|consen 81 KAVQVWDVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFD---SSVRLWDCR---SRSFEPIQI-LDEAKDGVSSIDV 153 (307)
T ss_pred ceEEEEEcccCeeeeecccccceeeEEEecCcceEEEecccc---ceeEEEEcc---cCCCCccch-hhhhcCceeEEEe
Confidence 357899999987532111111000011111234577777765 689999987 677776665 7777777777777
Q ss_pred cCCcEEEEcCccCCeEEEE
Q 048017 189 PDNRIIVVGGRRVFTYEFY 207 (566)
Q Consensus 189 ~dG~VyvvGG~~~~s~E~y 207 (566)
. +. -|++|+-..++..|
T Consensus 154 ~-~h-eIvaGS~DGtvRty 170 (307)
T KOG0316|consen 154 A-EH-EIVAGSVDGTVRTY 170 (307)
T ss_pred c-cc-EEEeeccCCcEEEE
Confidence 3 33 34566655556666
No 147
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=26.98 E-value=6.2e+02 Score=26.48 Aligned_cols=83 Identities=17% Similarity=0.139 Sum_probs=42.8
Q ss_pred eEEEEeeCCCCCeEEe-cc-CCCcccceeEEccCCeEEEEcCCCCCCCCCccccCc---CCcEEeccCCCCCCcceeEEE
Q 048017 336 CGRLKVTDKYPVWSME-FM-PMPRVMSDMLLLPSGDVIIINGASNGTAGWEDAEEP---DRRFVVLNPSKIPRMYHSSAV 410 (566)
Q Consensus 336 ~~~~d~~~~~~~W~~~-~M-~~~R~~~~~vvLpdG~V~vvGG~~~g~~~~~~~ydP---t~~Wt~~~~~~~~R~yhs~a~ 410 (566)
+.++|.......|+.. +. ...+.....+ .-+|.||+..-. . .+...++|+ +..|+.-....+.+..-+...
T Consensus 165 ~~al~~~tG~~~W~~~~~~~~~~~~~~~~~-~~~~~vy~~~~~--~-~~~~~a~~~~~G~~~w~~~~~~~~~~~~~~~~~ 240 (370)
T COG1520 165 LYALNADTGTLKWTYETPAPLSLSIYGSPA-IASGTVYVGSDG--Y-DGILYALNAEDGTLKWSQKVSQTIGRTAISTTP 240 (370)
T ss_pred EEEEEccCCcEEEEEecCCccccccccCce-eecceEEEecCC--C-cceEEEEEccCCcEeeeeeeecccCcccccccc
Confidence 4455655445789875 43 3455544444 558888886432 1 123446788 667875444444432111011
Q ss_pred EcCCCcEEEecC
Q 048017 411 VLPDGRILVGGS 422 (566)
Q Consensus 411 LlpdG~V~v~GG 422 (566)
....++|++.|+
T Consensus 241 ~~~~~~v~v~~~ 252 (370)
T COG1520 241 AVDGGPVYVDGG 252 (370)
T ss_pred cccCceEEECCc
Confidence 123556666555
No 148
>PRK04922 tolB translocation protein TolB; Provisional
Probab=26.10 E-value=8.4e+02 Score=26.18 Aligned_cols=138 Identities=15% Similarity=0.126 Sum_probs=69.0
Q ss_pred eEEEEECCCCcEEeCcCCCcccccCCeecCCCcEEEEcCCCCCCCeEEEEcCCCCCCCcccccCcccccccCcceEEEec
Q 048017 110 HSVLYDIASNTFRPLLLQTDTWCSSGAVLSDGTLVQTGGYNVGDRVIRLFTPCNDEGCDWVELSKNLWDRRWYASNQILP 189 (566)
Q Consensus 110 ~~~~yDp~t~~w~~l~~~~~~~c~~~~~l~dG~l~vvGG~~~g~~~v~~ydP~~~~t~~W~~~~~~M~~~R~y~s~~~L~ 189 (566)
...+||..+++.+.+..... ........+||+-+++....++...+.++|.. +.+.+.+... . .. .......+
T Consensus 229 ~l~~~dl~~g~~~~l~~~~g-~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~---~g~~~~lt~~-~-~~-~~~~~~sp 301 (433)
T PRK04922 229 AIYVQDLATGQRELVASFRG-INGAPSFSPDGRRLALTLSRDGNPEIYVMDLG---SRQLTRLTNH-F-GI-DTEPTWAP 301 (433)
T ss_pred EEEEEECCCCCEEEeccCCC-CccCceECCCCCEEEEEEeCCCCceEEEEECC---CCCeEECccC-C-CC-ccceEECC
Confidence 46788998888877654322 11234667899755543333445678889987 5554443321 0 01 11233456
Q ss_pred CCcEEEEcCccCCeEEEE--eCCCCCCCeeeeccccccCCCCCCCCccceEEEecCCcEEEEEc-----CeeEEEeccCC
Q 048017 190 DNRIIVVGGRRVFTYEFY--PKIDSLSSSLYLRFLIETRDPGEENNLYPFLHLLPDGNLFIFAN-----RRSILFDYINN 262 (566)
Q Consensus 190 dG~VyvvGG~~~~s~E~y--P~~~~~~~w~~~p~l~~~~d~~~~~~~yp~~~~l~~G~Ifv~Gg-----~~~e~yDp~t~ 262 (566)
||+-+++.........+| .... .....+... .. .+. .....+||+..++.. ....++|..++
T Consensus 302 DG~~l~f~sd~~g~~~iy~~dl~~--g~~~~lt~~-g~------~~~--~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g 370 (433)
T PRK04922 302 DGKSIYFTSDRGGRPQIYRVAASG--GSAERLTFQ-GN------YNA--RASVSPDGKKIAMVHGSGGQYRIAVMDLSTG 370 (433)
T ss_pred CCCEEEEEECCCCCceEEEEECCC--CCeEEeecC-CC------Ccc--CEEECCCCCEEEEEECCCCceeEEEEECCCC
Confidence 887555443221122344 3211 122221110 00 111 223467888665532 24677888877
Q ss_pred eEE
Q 048017 263 KLV 265 (566)
Q Consensus 263 ~W~ 265 (566)
+..
T Consensus 371 ~~~ 373 (433)
T PRK04922 371 SVR 373 (433)
T ss_pred CeE
Confidence 765
No 149
>PF10342 GPI-anchored: Ser-Thr-rich glycosyl-phosphatidyl-inositol-anchored membrane family; InterPro: IPR018466 This entry represents glycoproteins involved in cell wall (1-->6)-beta-glucan assembly. In yeast a null mutation leads to severe growth defects, aberrant multi-budded morphology, and mating defects [, ]. The entry includes DRMIP and Hesp-379, which are involved in both fruiting body formation and in host attack respectively. Hesp-379 is a haustorially expressed secreted protein; the haustorium being the small sucker that penetrates host tissue [].
Probab=25.82 E-value=3.6e+02 Score=21.77 Aligned_cols=72 Identities=15% Similarity=0.213 Sum_probs=41.6
Q ss_pred ceeecCCeEEEEEEecCCCCCcceEEEEEccCccccCCCCCcceEEeeeeeeeecccceEEEEEEcCCCCCcCCCcceEE
Q 048017 468 RTVSYNEVFAVTFELSSYSPSGEISVSLMTPSFTTHSFAMNQRLVVLNVVSVSQLSVYAYKVVVNGPPTATVAPPGYYMM 547 (566)
Q Consensus 468 ~~~~~g~~~~v~~~~~~~~~~~~~~v~l~~~~~~THs~n~~QR~v~L~~~~~~~~g~~~~~~~v~~P~~~~~~ppG~yml 547 (566)
+.+..|+.++|+-+....+. ....+.|+.... +. . +-...| ........ ..+++++|+ ++.+-+.|.|
T Consensus 7 ~~~~~g~~~~I~W~~~~~~~-~~~~I~L~~g~~-~~-~---~~~~~i--a~~v~~~~--gs~~~~~p~--~l~~~~~Y~i 74 (93)
T PF10342_consen 7 TVWTAGQPITITWTSDGTDP-GNVTIYLCNGNN-TN-L---NFVQTI--ASNVSNSD--GSYTWTIPS--DLPSGGDYFI 74 (93)
T ss_pred CEEECCCcEEEEEeCCCCCC-cEEEEEEEcCCC-CC-c---ceeEEE--EecccCCC--CEEEEEcCC--CCCCCCcEEE
Confidence 67899999999987543233 677888888776 11 1 111222 11111111 256666666 4665566766
Q ss_pred EEEc
Q 048017 548 FVVH 551 (566)
Q Consensus 548 fv~~ 551 (566)
-+++
T Consensus 75 ~~~~ 78 (93)
T PF10342_consen 75 QIVN 78 (93)
T ss_pred EEEE
Confidence 6666
No 150
>PF07705 CARDB: CARDB; InterPro: IPR011635 The APHP (acidic peptide-dependent hydrolases/peptidase) domain is found in a variety of different proteins.; PDB: 2KUT_A 2L0D_A 3IDU_A 2KL6_A.
Probab=25.76 E-value=3.6e+02 Score=21.79 Aligned_cols=74 Identities=20% Similarity=0.221 Sum_probs=41.1
Q ss_pred ceeecCCccceeecCCeEEEEEEec--CCCCCcceEEEEEccCccccCCCCCcceE-EeeeeeeeecccceEEEEEEcCC
Q 048017 459 SILSLESIDRTVSYNEVFAVTFELS--SYSPSGEISVSLMTPSFTTHSFAMNQRLV-VLNVVSVSQLSVYAYKVVVNGPP 535 (566)
Q Consensus 459 ~i~~~p~~~~~~~~g~~~~v~~~~~--~~~~~~~~~v~l~~~~~~THs~n~~QR~v-~L~~~~~~~~g~~~~~~~v~~P~ 535 (566)
.+...| ..+..|+.++|++... +........|.|..-+... +++.| .|. .| ...+++++..+
T Consensus 7 ~~~~~~---~~~~~g~~~~i~~~V~N~G~~~~~~~~v~~~~~~~~~-----~~~~i~~L~------~g-~~~~v~~~~~~ 71 (101)
T PF07705_consen 7 SITVSP---SNVVPGEPVTITVTVKNNGTADAENVTVRLYLDGNSV-----STVTIPSLA------PG-ESETVTFTWTP 71 (101)
T ss_dssp -EEEC----SEEETTSEEEEEEEEEE-SSS-BEEEEEEEEETTEEE-----EEEEESEB-------TT-EEEEEEEEEE-
T ss_pred EEeeCC---CcccCCCEEEEEEEEEECCCCCCCCEEEEEEECCcee-----ccEEECCcC------CC-cEEEEEEEEEe
Confidence 356667 8889999888887752 2222244567776666555 44444 332 23 23555565544
Q ss_pred CCCcCCCcceEEEEEc
Q 048017 536 TATVAPPGYYMMFVVH 551 (566)
Q Consensus 536 ~~~~~ppG~ymlfv~~ 551 (566)
. -||.|-|.++.
T Consensus 72 ~----~~G~~~i~~~i 83 (101)
T PF07705_consen 72 P----SPGSYTIRVVI 83 (101)
T ss_dssp S----S-CEEEEEEEE
T ss_pred C----CCCeEEEEEEE
Confidence 4 67888877764
No 151
>PRK02889 tolB translocation protein TolB; Provisional
Probab=25.66 E-value=8.5e+02 Score=26.12 Aligned_cols=84 Identities=14% Similarity=0.128 Sum_probs=44.1
Q ss_pred ceEEEEECCCCcEEeCcCCCcccccCCeecCCCcEEEEcCCCCCCCeEEEEcCCCCCCCcccccCcccccccCcceEEEe
Q 048017 109 AHSVLYDIASNTFRPLLLQTDTWCSSGAVLSDGTLVQTGGYNVGDRVIRLFTPCNDEGCDWVELSKNLWDRRWYASNQIL 188 (566)
Q Consensus 109 ~~~~~yDp~t~~w~~l~~~~~~~c~~~~~l~dG~l~vvGG~~~g~~~v~~ydP~~~~t~~W~~~~~~M~~~R~y~s~~~L 188 (566)
.....+|..++..+.+.... .........+||+.+++.....+...++.+|.. +.+.+.+.. ...+......-
T Consensus 264 ~~Iy~~d~~~~~~~~lt~~~-~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~---~g~~~~lt~---~g~~~~~~~~S 336 (427)
T PRK02889 264 SQIYTVNADGSGLRRLTQSS-GIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPAS---GGAAQRVTF---TGSYNTSPRIS 336 (427)
T ss_pred ceEEEEECCCCCcEECCCCC-CCCcCeEEcCCCCEEEEEecCCCCcEEEEEECC---CCceEEEec---CCCCcCceEEC
Confidence 34566677777776664321 122234567899866654433344567777765 444443321 12222233444
Q ss_pred cCCcEEEEcCc
Q 048017 189 PDNRIIVVGGR 199 (566)
Q Consensus 189 ~dG~VyvvGG~ 199 (566)
+||+.++....
T Consensus 337 pDG~~Ia~~s~ 347 (427)
T PRK02889 337 PDGKLLAYISR 347 (427)
T ss_pred CCCCEEEEEEc
Confidence 68876665443
No 152
>PF08950 DUF1861: Protein of unknown function (DUF1861); InterPro: IPR015045 This hypothetical protein, found in bacteria and in the eukaryote Leishmania, has no known function. ; PDB: 2B4W_A.
Probab=25.52 E-value=2.5e+02 Score=28.72 Aligned_cols=103 Identities=17% Similarity=0.147 Sum_probs=46.1
Q ss_pred EEEeeCCeEEEEeccCCCCCCCCCCCCccccCCCCCCCcccceEEEEECC-CCcEEeCcC-----CCcccccCCeecCCC
Q 048017 68 MQVLNNDKVIIFDRTDMGPSNLSLPIDKCRKEGDVGQLDCTAHSVLYDIA-SNTFRPLLL-----QTDTWCSSGAVLSDG 141 (566)
Q Consensus 68 ~~~l~~gkV~~~gg~~~~~s~~~~p~G~~~~~~~~~~~~~~~~~~~yDp~-t~~w~~l~~-----~~~~~c~~~~~l~dG 141 (566)
+-...+||.++.|+.|...+.. ..++..|--. .++|++++. +.++|- +-.+|
T Consensus 31 aPF~~~Gk~~IaGRVE~Rdswe------------------~S~V~fF~e~g~~~w~~v~~~~~~~LqDPF~----t~I~g 88 (298)
T PF08950_consen 31 APFEYNGKTVIAGRVEKRDSWE------------------HSEVRFFEETGKDEWTPVEGAPVFQLQDPFV----TRIQG 88 (298)
T ss_dssp --EEETTEEEEEEEEE-TT-SS--------------------EEEEEEEEETTEEEE-TT---BS-EEEEE----EEETT
T ss_pred cceeECCEEEEEeeeecCCchh------------------ccEEEEEEEeCCCeEEECCCcceEEecCcce----eeECC
Confidence 3344699999999988433210 1345666555 899999875 234542 22355
Q ss_pred cEEEEcCCC---CCCC----eEEEEcCCCCCCCcccccCcccccccCcceEEEecCCcEEEEc
Q 048017 142 TLVQTGGYN---VGDR----VIRLFTPCNDEGCDWVELSKNLWDRRWYASNQILPDNRIIVVG 197 (566)
Q Consensus 142 ~l~vvGG~~---~g~~----~v~~ydP~~~~t~~W~~~~~~M~~~R~y~s~~~L~dG~VyvvG 197 (566)
.+ ++||-. .... ....|--...+-......|+-|..-| .+.|.||+|-|.-
T Consensus 89 el-ifGGvev~~~~~~~l~wrt~FYrG~~~~L~~f~~GPd~MKDiR----lveL~DG~IGVfT 146 (298)
T PF08950_consen 89 EL-IFGGVEVFPNDGGVLSWRTVFYRGKIHDLKYFFTGPDGMKDIR----LVELADGRIGVFT 146 (298)
T ss_dssp EE-EEEEEEEE-------EEEEEEEEEETTEEEEEEE--TT----E----EEE-TTS-EEEEE
T ss_pred EE-EEeeEEEeecCCCceEEEEEEEecChhheeeeecCCcccceeE----EEEecCCeEEEEe
Confidence 54 566631 0000 01111100000112333454588777 6889999999875
No 153
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.14 E-value=4.1e+02 Score=27.52 Aligned_cols=84 Identities=17% Similarity=0.177 Sum_probs=51.1
Q ss_pred eEEEEECCCCcEE-eCcCC-CcccccCCeecCCCcE-EEEcCCCC-CCCeEEEEcCCCCCCCcccccCcccccccCcceE
Q 048017 110 HSVLYDIASNTFR-PLLLQ-TDTWCSSGAVLSDGTL-VQTGGYNV-GDRVIRLFTPCNDEGCDWVELSKNLWDRRWYASN 185 (566)
Q Consensus 110 ~~~~yDp~t~~w~-~l~~~-~~~~c~~~~~l~dG~l-~vvGG~~~-g~~~v~~ydP~~~~t~~W~~~~~~M~~~R~y~s~ 185 (566)
...+||+...+-- .+... ...|+..+++-+||++ |.+-+..+ +.--+-+||-. .....+..--..+-.-|-+
T Consensus 92 f~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r----~~fqrvgE~~t~GiGpHev 167 (366)
T COG3490 92 FAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAR----EGFQRVGEFSTHGIGPHEV 167 (366)
T ss_pred eEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEecc----cccceecccccCCcCccee
Confidence 4678898876532 23333 3457888889999985 45544333 33456788875 3344443311233445667
Q ss_pred EEecCCcEEEEc
Q 048017 186 QILPDNRIIVVG 197 (566)
Q Consensus 186 ~~L~dG~VyvvG 197 (566)
..+.||+.+|+-
T Consensus 168 ~lm~DGrtlvva 179 (366)
T COG3490 168 TLMADGRTLVVA 179 (366)
T ss_pred EEecCCcEEEEe
Confidence 888899988874
No 154
>cd02849 CGTase_C_term Cgtase (cyclodextrin glycosyltransferase) C-terminus domain. Enzymes such as amylases, cyclomaltodextrinase (CDase), and CGTase degrade starch to smaller oligosaccharides by hydrolyzing the alpha-D-(1,4) linkages between glucose residues present in starch. In the case of CGTases, an additional cyclization reaction is catalyzed yielding mixtures of cyclic oligosaccharides which are referred to as alpha-, beta-, or gamma-cyclodextrins (CDs) (consisting of six, seven, or eight glucoses, respectively). CGTases are characterized as depending on the major product of the cyclization reaction. Besides having similar catalytic site residues, amylases and CGTases contain carbohydrate binding domains that are distant from the active site and which are implicated in attaching the enzyme to raw starch granules and in guiding the amylose chain into the active site. The C-terminus of CGTase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These d
Probab=24.09 E-value=4e+02 Score=21.73 Aligned_cols=74 Identities=20% Similarity=0.181 Sum_probs=45.6
Q ss_pred CCceeec-CCccceeecCCeEEEEEEecCCCCCcceEEEEEccCccccCCCCCcceEEeeeeeeeecccceEEEEEEcCC
Q 048017 457 RPSILSL-ESIDRTVSYNEVFAVTFELSSYSPSGEISVSLMTPSFTTHSFAMNQRLVVLNVVSVSQLSVYAYKVVVNGPP 535 (566)
Q Consensus 457 RP~i~~~-p~~~~~~~~g~~~~v~~~~~~~~~~~~~~v~l~~~~~~THs~n~~QR~v~L~~~~~~~~g~~~~~~~v~~P~ 535 (566)
-|.|.++ | ..-..|++++|+=+--+. ...+|.+ + -...++... +. ..+++++|.
T Consensus 2 ~P~I~~i~P---~~g~~G~~VtI~G~gFg~---~~~~V~~---g-----------~~~a~v~s~--sd---t~I~~~vP~ 56 (81)
T cd02849 2 TPLIGHVGP---MMGKAGNTVTISGEGFGS---APGTVYF---G-----------TTAATVISW--SD---TRIVVTVPN 56 (81)
T ss_pred CCEEeeEcC---CCCCCCCEEEEEEECCCC---CCcEEEE---C-----------CEEeEEEEE--CC---CEEEEEeCC
Confidence 3778777 5 555679988886432211 1123322 2 133344432 22 578999996
Q ss_pred CCCcCCCcceEEEEEc-CCCCcccE
Q 048017 536 TATVAPPGYYMMFVVH-AGIPSHAV 559 (566)
Q Consensus 536 ~~~~~ppG~ymlfv~~-~gvPS~a~ 559 (566)
. ++|.|-++|.. +|.=|.+.
T Consensus 57 ~----~aG~~~V~V~~~~G~~Sn~~ 77 (81)
T cd02849 57 V----PAGNYDVTVKTADGATSNGY 77 (81)
T ss_pred C----CCceEEEEEEeCCCcccCcE
Confidence 4 78999999997 68877644
No 155
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=24.01 E-value=7.2e+02 Score=24.70 Aligned_cols=30 Identities=17% Similarity=0.434 Sum_probs=22.7
Q ss_pred eEEEecCCcEEEEEcC--eeEEEeccCCeEEE
Q 048017 237 FLHLLPDGNLFIFANR--RSILFDYINNKLVK 266 (566)
Q Consensus 237 ~~~~l~~G~Ifv~Gg~--~~e~yDp~t~~W~~ 266 (566)
.+.+-|.|++++.|.. ++.+||...++-.+
T Consensus 236 av~vdpsgrll~sg~~dssc~lydirg~r~iq 267 (350)
T KOG0641|consen 236 AVAVDPSGRLLASGHADSSCMLYDIRGGRMIQ 267 (350)
T ss_pred EEEECCCcceeeeccCCCceEEEEeeCCceee
Confidence 3445578999999874 57889999887554
No 156
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=23.98 E-value=4.4e+02 Score=29.27 Aligned_cols=95 Identities=16% Similarity=0.126 Sum_probs=48.6
Q ss_pred CCEEEEEcCCCCCccccccccccccccCCeeEEEEeeCCCCCeEEe-ccCCCcccceeEEccCCeEEEEcCCCCCCCCCc
Q 048017 306 DAEVMVCGGAPAGAFIKSDKESVYVEASRTCGRLKVTDKYPVWSME-FMPMPRVMSDMLLLPSGDVIIINGASNGTAGWE 384 (566)
Q Consensus 306 ~gkI~v~GG~~~~~~~~~~~~~~~~pa~~s~~~~d~~~~~~~W~~~-~M~~~R~~~~~vvLpdG~V~vvGG~~~g~~~~~ 384 (566)
+|+-+++||.. .++.+.|+..++..-..+ +-..+-+++- .+-||-+|.+.-=.+ | ..
T Consensus 476 dgrtLivGGea-----------------stlsiWDLAapTprikaeltssapaCyAL-a~spDakvcFsccsd-G---nI 533 (705)
T KOG0639|consen 476 DGRTLIVGGEA-----------------STLSIWDLAAPTPRIKAELTSSAPACYAL-AISPDAKVCFSCCSD-G---NI 533 (705)
T ss_pred CCceEEecccc-----------------ceeeeeeccCCCcchhhhcCCcchhhhhh-hcCCccceeeeeccC-C---cE
Confidence 89999999962 345667777655555444 3333444433 344677776543222 2 12
Q ss_pred cccCcCCcEEeccCCCCCCcceeEEEEcCCCcEEEecCC
Q 048017 385 DAEEPDRRFVVLNPSKIPRMYHSSAVVLPDGRILVGGSN 423 (566)
Q Consensus 385 ~~ydPt~~Wt~~~~~~~~R~yhs~a~LlpdG~V~v~GG~ 423 (566)
.+||-.|+- .+...+----..|+-.+-+||.=+-.||-
T Consensus 534 ~vwDLhnq~-~VrqfqGhtDGascIdis~dGtklWTGGl 571 (705)
T KOG0639|consen 534 AVWDLHNQT-LVRQFQGHTDGASCIDISKDGTKLWTGGL 571 (705)
T ss_pred EEEEcccce-eeecccCCCCCceeEEecCCCceeecCCC
Confidence 345552111 11111111112345556678876667774
No 157
>PRK02655 psbI photosystem II reaction center I protein I; Provisional
Probab=23.55 E-value=34 Score=23.64 Aligned_cols=23 Identities=26% Similarity=0.348 Sum_probs=16.0
Q ss_pred cEEeecceeeeehhhhhhhcccc
Q 048017 2 TIKFKNRSFFTFLTLFFSFSTLS 24 (566)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~ 24 (566)
|+|+.--...++...+|+|++++
T Consensus 3 tLKi~Vy~vV~ffvsLFiFGfls 25 (38)
T PRK02655 3 ALKISVYIVVFFFVGLFVFGFLS 25 (38)
T ss_pred eEEeeehhhHHHHHHHHHcccCC
Confidence 67777666666666677777764
No 158
>CHL00024 psbI photosystem II protein I
Probab=23.12 E-value=33 Score=23.47 Aligned_cols=23 Identities=30% Similarity=0.433 Sum_probs=14.2
Q ss_pred cEEeecceeeeehhhhhhhcccc
Q 048017 2 TIKFKNRSFFTFLTLFFSFSTLS 24 (566)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~ 24 (566)
|+|+.--...++...+|+|++++
T Consensus 3 ~LKi~Vy~vV~ffvsLFifGFls 25 (36)
T CHL00024 3 TLKLFVYTVVIFFVSLFIFGFLS 25 (36)
T ss_pred eEEeeehhHHHHHHHHHHccccC
Confidence 56766555555556666666654
No 159
>COG5184 ATS1 Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton]
Probab=22.40 E-value=1.1e+03 Score=26.10 Aligned_cols=106 Identities=17% Similarity=0.148 Sum_probs=54.4
Q ss_pred cceeEEccCCeEEEEcCCCCCCCCCcc--ccCcCCcEEeccCCC-----CCCcceeEEEEcCCCcEEEecCCCCcccccC
Q 048017 359 MSDMLLLPSGDVIIINGASNGTAGWED--AEEPDRRFVVLNPSK-----IPRMYHSSAVVLPDGRILVGGSNPHRRYNFT 431 (566)
Q Consensus 359 ~~~~vvLpdG~V~vvGG~~~g~~~~~~--~ydPt~~Wt~~~~~~-----~~R~yhs~a~LlpdG~V~v~GG~~~~~~~~~ 431 (566)
.|..++.-||.||..|=...+.-+..+ .++ -..|+.++... ..+..|+.+. .-+|.||.=|-+.++....
T Consensus 350 ~H~l~L~~~G~l~a~Gr~~~~qlg~~~~~~~~-~~~~~~ls~~~~~~~v~~gt~~~~~~-t~~gsvy~wG~ge~gnlG~- 426 (476)
T COG5184 350 SHSLILRKDGTLYAFGRGDRGQLGIQEEITID-VSTPTKLSVAIKLEQVACGTHHNIAR-TDDGSVYSWGWGEHGNLGN- 426 (476)
T ss_pred ceEEEEecCceEEEecCCccccccCcccceee-cCCccccccccceEEEEecCccceee-ccCCceEEecCchhhhccC-
Confidence 355566779999999965543222211 111 11222222111 2355666665 4688999999776654321
Q ss_pred CCCCCCcceEEEEeccccCCCCCCCCCc-eeecCCccceeecCCeEEEEEE
Q 048017 432 AYPYPTDLSLEAFHPHYLDPENAYMRPS-ILSLESIDRTVSYNEVFAVTFE 481 (566)
Q Consensus 432 ~~~~~~~~~vE~y~Ppyl~~~~~~~RP~-i~~~p~~~~~~~~g~~~~v~~~ 481 (566)
-| .-|.+.+|.+- |+. +...+. ....||.+|.|-..
T Consensus 427 ---g~---~~~~~~~pt~i------~~~~~~~~~~--i~~g~~~~~~v~~~ 463 (476)
T COG5184 427 ---GP---KEADVLVPTLI------RQPLLSGHNI--ILAGYGNQFSVIEE 463 (476)
T ss_pred ---Cc---hhhhccccccc------cccccCCCce--EEeccCcceEEEec
Confidence 11 12344566664 332 233331 33578888877544
No 160
>COG4447 Uncharacterized protein related to plant photosystem II stability/assembly factor [General function prediction only]
Probab=21.29 E-value=9.2e+02 Score=24.93 Aligned_cols=168 Identities=12% Similarity=0.099 Sum_probs=0.0
Q ss_pred CceEEccCCCcc--ceeEEEEeeCCeEEEEeccCCCCCCCCCCCCccccCCCCCCCcccceEEEEECCCCcEEeCcCCCc
Q 048017 52 GQWVLLQSSIGI--SAMHMQVLNNDKVIIFDRTDMGPSNLSLPIDKCRKEGDVGQLDCTAHSVLYDIASNTFRPLLLQTD 129 (566)
Q Consensus 52 g~W~~l~~~~~~--~a~h~~~l~~gkV~~~gg~~~~~s~~~~p~G~~~~~~~~~~~~~~~~~~~yDp~t~~w~~l~~~~~ 129 (566)
..|+.+..-.-- .....+...+|+.+++|-.. ....-+++-...|.+-.....
T Consensus 158 k~Wk~l~e~~v~~~~~n~ia~s~dng~vaVg~rG-------------------------s~f~T~~aGqt~~~~~g~~s~ 212 (339)
T COG4447 158 KNWKALVEKAVGLAVPNEIARSADNGYVAVGARG-------------------------SFFSTWGAGQTVWLPHGRNSS 212 (339)
T ss_pred ccHhHhcccccchhhhhhhhhhccCCeEEEecCc-------------------------ceEecCCCCccEEeccCCCcc
Q ss_pred ccccCCeecCCC--cEEEEcCCCCCCCeEEEEcCCCCCCCcccccCcccccccCcceEEEec---CCcEEEEcCccCCeE
Q 048017 130 TWCSSGAVLSDG--TLVQTGGYNVGDRVIRLFTPCNDEGCDWVELSKNLWDRRWYASNQILP---DNRIIVVGGRRVFTY 204 (566)
Q Consensus 130 ~~c~~~~~l~dG--~l~vvGG~~~g~~~v~~ydP~~~~t~~W~~~~~~M~~~R~y~s~~~L~---dG~VyvvGG~~~~s~ 204 (566)
++-..-...-+| -+++.||.. ...-+++. .+.|.+....-...|..++..-+. +++|||.|+..+
T Consensus 213 ~~letmg~adag~~g~la~g~qg-----~~f~~~~~--gD~wsd~~~~~~~g~~~~Gl~d~a~~a~~~v~v~G~gGn--- 282 (339)
T COG4447 213 RRLETMGLADAGSKGLLARGGQG-----DQFSWVCG--GDEWSDQGEPVNLGRRSWGLLDFAPRAPPEVWVSGIGGN--- 282 (339)
T ss_pred chhcccccccCCccceEEEcccc-----ceeecCCC--cccccccccchhcccCCCccccccccCCCCeEEeccCcc---
Q ss_pred EEEeCCCCCCCeeeeccccccCCCCCCCCccceEEEecCCcEEEEEcCeeEE-EeccC
Q 048017 205 EFYPKIDSLSSSLYLRFLIETRDPGEENNLYPFLHLLPDGNLFIFANRRSIL-FDYIN 261 (566)
Q Consensus 205 E~yP~~~~~~~w~~~p~l~~~~d~~~~~~~yp~~~~l~~G~Ifv~Gg~~~e~-yDp~t 261 (566)
+.-.++....|..---..++ ..++| .+..+.+++.|++|-..+.. |+|..
T Consensus 283 -vl~StdgG~t~skd~g~~er-----~s~l~-~V~~ts~~~~~l~Gq~Gvll~~n~~a 333 (339)
T COG4447 283 -VLASTDGGTTWSKDGGVEER-----VSNLY-SVVFTSPKAGFLCGQKGVLLKYNPGA 333 (339)
T ss_pred -EEEecCCCeeEeccCChhhh-----hhhhh-eEEeccCCceEEEcCCceEEEecCcc
No 161
>smart00155 PLDc Phospholipase D. Active site motifs. Phosphatidylcholine-hydrolyzing phospholipase D (PLD) isoforms are activated by ADP-ribosylation factors (ARFs). PLD produces phosphatidic acid from phosphatidylcholine, which may be essential for the formation of certain types of transport vesicles or may be constitutive vesicular transport to signal transduction pathways. PC-hydrolysing PLD is a homologue of cardiolipin synthase, phosphatidylserine synthase, bacterial PLDs, and viral proteins. Each of these appears to possess a domain duplication which is apparent by the presence of two motifs containing well-conserved histidine, lysine, aspartic acid, and/or asparagine residues which may contribute to the active site. An E. coli endonuclease (nuc) and similar proteins appear to be PLD homologues but possess only one of these motifs. The profile contained here represents only the putative active site regions, since an accurate multiple alignment of the repeat units has not be
Probab=20.73 E-value=1e+02 Score=19.44 Aligned_cols=22 Identities=18% Similarity=0.326 Sum_probs=16.0
Q ss_pred cccceeEEccCCeEEEEcCCCC
Q 048017 357 RVMSDMLLLPSGDVIIINGASN 378 (566)
Q Consensus 357 R~~~~~vvLpdG~V~vvGG~~~ 378 (566)
+.+|.-.++.|++..++|+.+.
T Consensus 3 ~~~H~K~~v~D~~~~~iGs~N~ 24 (28)
T smart00155 3 GVLHTKLMIVDDEIAYIGSANL 24 (28)
T ss_pred CcEEeEEEEEcCCEEEEeCccC
Confidence 3455556667999999999863
No 162
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=20.17 E-value=1.9e+02 Score=31.88 Aligned_cols=104 Identities=16% Similarity=0.144 Sum_probs=58.5
Q ss_pred EEeeCCeEEEEeccCCCCCCCCCCCCccccCCCCCCCcccceEEEEECCCCcEEeCcCCCc--ccccCCeecCCCcEEEE
Q 048017 69 QVLNNDKVIIFDRTDMGPSNLSLPIDKCRKEGDVGQLDCTAHSVLYDIASNTFRPLLLQTD--TWCSSGAVLSDGTLVQT 146 (566)
Q Consensus 69 ~~l~~gkV~~~gg~~~~~s~~~~p~G~~~~~~~~~~~~~~~~~~~yDp~t~~w~~l~~~~~--~~c~~~~~l~dG~l~vv 146 (566)
-+++||+-+++||.. ..+.+||.++-+=+--..++. .-|.+-+.-+|-+|...
T Consensus 472 kL~pdgrtLivGGea-------------------------stlsiWDLAapTprikaeltssapaCyALa~spDakvcFs 526 (705)
T KOG0639|consen 472 KLLPDGRTLIVGGEA-------------------------STLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFS 526 (705)
T ss_pred EecCCCceEEecccc-------------------------ceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeee
Confidence 344688888888852 247789998766544333332 55777777778776554
Q ss_pred cCCCCCCCeEEEEcCCCCCCCcccccCcccccccCcceEEEec-CCcEEEEcCccCCeEEEE
Q 048017 147 GGYNVGDRVIRLFTPCNDEGCDWVELSKNLWDRRWYASNQILP-DNRIIVVGGRRVFTYEFY 207 (566)
Q Consensus 147 GG~~~g~~~v~~ydP~~~~t~~W~~~~~~M~~~R~y~s~~~L~-dG~VyvvGG~~~~s~E~y 207 (566)
-= .+ ..|.+||.. ..+- +.. ++----..++..+. ||.=+=.||.++ ++.+|
T Consensus 527 cc-sd--GnI~vwDLh---nq~~--Vrq-fqGhtDGascIdis~dGtklWTGGlDn-tvRcW 578 (705)
T KOG0639|consen 527 CC-SD--GNIAVWDLH---NQTL--VRQ-FQGHTDGASCIDISKDGTKLWTGGLDN-TVRCW 578 (705)
T ss_pred ec-cC--CcEEEEEcc---ccee--eec-ccCCCCCceeEEecCCCceeecCCCcc-ceeeh
Confidence 22 12 357788876 2221 112 33222233444443 676667788764 34444
No 163
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=20.01 E-value=1.1e+03 Score=25.50 Aligned_cols=230 Identities=16% Similarity=0.183 Sum_probs=115.5
Q ss_pred eecCCCcEEEEcCCCCCCCeEEEEcCCCCCCCcc-cccCccc-ccccCcceEEEecCCcEEEEcCccCCeEEEEeCCCCC
Q 048017 136 AVLSDGTLVQTGGYNVGDRVIRLFTPCNDEGCDW-VELSKNL-WDRRWYASNQILPDNRIIVVGGRRVFTYEFYPKIDSL 213 (566)
Q Consensus 136 ~~l~dG~l~vvGG~~~g~~~v~~ydP~~~~t~~W-~~~~~~M-~~~R~y~s~~~L~dG~VyvvGG~~~~s~E~yP~~~~~ 213 (566)
.+-+||+.++.+... +.+.+++.. + .+ ...-. + ...++-...+.-+||+ |++.|....++.+|-...
T Consensus 166 ~fs~~g~~l~~~~~~---~~i~~~~~~---~-~~~~~~~~-l~~h~~~v~~~~fs~d~~-~l~s~s~D~tiriwd~~~-- 234 (456)
T KOG0266|consen 166 DFSPDGRALAAASSD---GLIRIWKLE---G-IKSNLLRE-LSGHTRGVSDVAFSPDGS-YLLSGSDDKTLRIWDLKD-- 234 (456)
T ss_pred EEcCCCCeEEEccCC---CcEEEeecc---c-ccchhhcc-ccccccceeeeEECCCCc-EEEEecCCceEEEeeccC--
Confidence 446789987776543 456666664 1 22 11222 2 2334444455556888 556666667777772211
Q ss_pred CCeeeeccccccCCCCCCCCccceEEEecCCcEEEEEcC--eeEEEeccCCeEEEeecccCCCCCCccCCCCceeeeccc
Q 048017 214 SSSLYLRFLIETRDPGEENNLYPFLHLLPDGNLFIFANR--RSILFDYINNKLVKEFPVIPGNDKRNYPSTGSSILLPVK 291 (566)
Q Consensus 214 ~~w~~~p~l~~~~d~~~~~~~yp~~~~l~~G~Ifv~Gg~--~~e~yDp~t~~W~~~~p~lp~~~~r~~~~~g~avllpl~ 291 (566)
.-..+.-+..... .-| .+.-.++|++++.|+. .+-+||.++.+-.+.+ +.. ..+ -+++.++
T Consensus 235 -~~~~~~~l~gH~~-----~v~-~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l---~~h---s~~--is~~~f~-- 297 (456)
T KOG0266|consen 235 -DGRNLKTLKGHST-----YVT-SVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKL---KGH---SDG--ISGLAFS-- 297 (456)
T ss_pred -CCeEEEEecCCCC-----ceE-EEEecCCCCEEEEecCCCcEEEEeccCCeEEEee---ecc---CCc--eEEEEEC--
Confidence 1011111111110 111 2223468899999885 4678999987655433 332 111 1122221
Q ss_pred ccCCCCCCCCCCCCCCEEEEEcCCCCCccccccccccccccCCeeEEEEeeCCCCCeE-----Ee-ccCCCcccceeEEc
Q 048017 292 LSAGSDGNGTAALPDAEVMVCGGAPAGAFIKSDKESVYVEASRTCGRLKVTDKYPVWS-----ME-FMPMPRVMSDMLLL 365 (566)
Q Consensus 292 ~~~~~~~~~y~~~~~gkI~v~GG~~~~~~~~~~~~~~~~pa~~s~~~~d~~~~~~~W~-----~~-~M~~~R~~~~~vvL 365 (566)
.++.+++.+..+ ..+..+|+. +|. .. ....+. ....+..
T Consensus 298 -------------~d~~~l~s~s~d-----------------~~i~vwd~~----~~~~~~~~~~~~~~~~~-~~~~~~f 342 (456)
T KOG0266|consen 298 -------------PDGNLLVSASYD-----------------GTIRVWDLE----TGSKLCLKLLSGAENSA-PVTSVQF 342 (456)
T ss_pred -------------CCCCEEEEcCCC-----------------ccEEEEECC----CCceeeeecccCCCCCC-ceeEEEE
Confidence 167888887543 234556654 232 11 222231 2233333
Q ss_pred -cCCeEEEEcCCCCCCCCCccccCc-----CCcEEeccCCCCCCcceeEEEEcCCCcEEEecCCCCcccccCCCCCCCcc
Q 048017 366 -PSGDVIIINGASNGTAGWEDAEEP-----DRRFVVLNPSKIPRMYHSSAVVLPDGRILVGGSNPHRRYNFTAYPYPTDL 439 (566)
Q Consensus 366 -pdG~V~vvGG~~~g~~~~~~~ydP-----t~~Wt~~~~~~~~R~yhs~a~LlpdG~V~v~GG~~~~~~~~~~~~~~~~~ 439 (566)
|+|+.++++..+.- ...||. -.+|+..... .|... ..+..++|+.++.|+...
T Consensus 343 sp~~~~ll~~~~d~~----~~~w~l~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~i~sg~~d~-------------- 401 (456)
T KOG0266|consen 343 SPNGKYLLSASLDRT----LKLWDLRSGKSVGTYTGHSNL--VRCIF-SPTLSTGGKLIYSGSEDG-------------- 401 (456)
T ss_pred CCCCcEEEEecCCCe----EEEEEccCCcceeeecccCCc--ceeEe-cccccCCCCeEEEEeCCc--------------
Confidence 88888777765521 122333 2233332222 13322 234467999999998643
Q ss_pred eEEEEecccc
Q 048017 440 SLEAFHPHYL 449 (566)
Q Consensus 440 ~vE~y~Ppyl 449 (566)
.|++|++..+
T Consensus 402 ~v~~~~~~s~ 411 (456)
T KOG0266|consen 402 SVYVWDSSSG 411 (456)
T ss_pred eEEEEeCCcc
Confidence 4778887764
Done!