BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048020
(304 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|225457353|ref|XP_002281793.1| PREDICTED: uncharacterized protein LOC100265514 [Vitis vinifera]
Length = 497
Score = 325 bits (832), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 182/335 (54%), Positives = 216/335 (64%), Gaps = 46/335 (13%)
Query: 1 MGPTQDRSEIVFFDVETTFPIR-----HIWEFGAILVCPRKLEELDKYTTLVRPADPSLV 55
MGP ++RSEI FFDVETT P R I EFGAILVCPRKL EL+ Y+TLVRP D SLV
Sbjct: 1 MGPGEERSEIAFFDVETTVPTRVGQGFAILEFGAILVCPRKLVELESYSTLVRPHDLSLV 60
Query: 56 SNLCARRNDITPEDVFSAPTFADIADTVFDILQ--------------------------- 88
S+L R N IT + V SAP F DIAD V+DIL
Sbjct: 61 SSLSVRCNGITRDAVVSAPNFRDIADRVYDILHGRIWAGHNILRFDCARIREAFAEIGRP 120
Query: 89 APKPKGTIDSLNLLTERFGRRAGDMKMASLATYFGLGQQTHRSLDDVLMNLEVLKYCATV 148
AP+PKG+IDSL LLT+RFGRRAGDMKMA+LATYFGLGQQTHRSLDDV MNLEVLKYCATV
Sbjct: 121 APEPKGSIDSLALLTQRFGRRAGDMKMATLATYFGLGQQTHRSLDDVRMNLEVLKYCATV 180
Query: 149 LLLESSLPDIFTGNGCVSQNATARSRINVRSSPEGTSQNLSAPSSKFKFENASNVSPPDQ 208
L LESSLPDIFT N VS NA RSR N ++SP G + N+S PSS KFEN +
Sbjct: 181 LFLESSLPDIFTTNSWVSPNAVTRSRSNGKASPVGMNLNMSTPSSSIKFEN--HSISSPS 238
Query: 209 GKEGIHPIFTLVTQGTGELDSVLAVTTADQPNPFDMSQLSNQMETQSLQPDDTMEDKSAP 268
+ I LV T +QP+PF++ LS+++E +SL+PD +E+K
Sbjct: 239 THSSMEGILNLVEPNT------------NQPDPFNLGALSSEIERESLKPDYALEEKPVT 286
Query: 269 ESREMCSTASVSEGSSGYAGFMEPDEVSITSISAA 303
ES EM ST + S+ YAGF++P EVS+ SISA+
Sbjct: 287 ESLEMLSTTTASQDCCDYAGFLDPAEVSVASISAS 321
>gi|147817752|emb|CAN66660.1| hypothetical protein VITISV_031720 [Vitis vinifera]
Length = 535
Score = 323 bits (828), Expect = 6e-86, Method: Compositional matrix adjust.
Identities = 181/335 (54%), Positives = 216/335 (64%), Gaps = 46/335 (13%)
Query: 1 MGPTQDRSEIVFFDVETTFPIR-----HIWEFGAILVCPRKLEELDKYTTLVRPADPSLV 55
MGP ++RSEI FFDVETT P R I EFGAILVCPRKL EL+ Y+TLVRP D SLV
Sbjct: 1 MGPGEERSEIAFFDVETTVPTRVGQGFAILEFGAILVCPRKLVELESYSTLVRPHDLSLV 60
Query: 56 SNLCARRNDITPEDVFSAPTFADIADTVFDILQ--------------------------- 88
S+L R N IT + V SAP F DIAD V+DIL
Sbjct: 61 SSLSVRCNGITRDAVVSAPNFRDIADRVYDILHGRIWAGHNILRFDCARIREAFAEIGRP 120
Query: 89 APKPKGTIDSLNLLTERFGRRAGDMKMASLATYFGLGQQTHRSLDDVLMNLEVLKYCATV 148
AP+PKG+IDSL LLT+RFGRRAGDMKMA+LATYFGLGQQTHRSLDDV MNLEVLKYCATV
Sbjct: 121 APEPKGSIDSLALLTQRFGRRAGDMKMATLATYFGLGQQTHRSLDDVRMNLEVLKYCATV 180
Query: 149 LLLESSLPDIFTGNGCVSQNATARSRINVRSSPEGTSQNLSAPSSKFKFENASNVSPPDQ 208
L LESSLPDIFT N VS NA RSR N ++SP G + N+S PSS KFEN +
Sbjct: 181 LFLESSLPDIFTTNSWVSPNAVTRSRSNGKASPVGMNLNMSTPSSSIKFEN--HSISSPS 238
Query: 209 GKEGIHPIFTLVTQGTGELDSVLAVTTADQPNPFDMSQLSNQMETQSLQPDDTMEDKSAP 268
+ I LV T ++P+PF++ LS+++E +SL+PD +E+K
Sbjct: 239 THSSMEGILNLVEPNT------------NRPDPFNLGALSSEIERESLKPDYALEEKPVT 286
Query: 269 ESREMCSTASVSEGSSGYAGFMEPDEVSITSISAA 303
ES EM ST + S+ YAGF++P EVS+ SISA+
Sbjct: 287 ESLEMLSTTTASQDCCDYAGFLDPAEVSVASISAS 321
>gi|255547339|ref|XP_002514727.1| exonuclease, putative [Ricinus communis]
gi|223546331|gb|EEF47833.1| exonuclease, putative [Ricinus communis]
Length = 501
Score = 308 bits (788), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 184/334 (55%), Positives = 213/334 (63%), Gaps = 44/334 (13%)
Query: 2 GPTQDRSEIVFFDVETTFPIR-----HIWEFGAILVCPRKLEELDKYTTLVRPADPSLVS 56
GPT +RSEI FFD+ETT P R I EFGAILVC RKLEEL Y+TLVRPA+ SL+S
Sbjct: 4 GPTDERSEIAFFDLETTVPNRPGQGFAILEFGAILVCSRKLEELHSYSTLVRPANLSLIS 63
Query: 57 NLCARRNDITPEDVFSAPTFADIADTVFDIL---------------------------QA 89
R N IT + V APTFA+IAD V++IL Q
Sbjct: 64 PTSVRCNGITHDAVVLAPTFAEIADIVYEILNGRIWAGHNIQRFDCVRIREAFAEIGRQP 123
Query: 90 PKPKGTIDSLNLLTERFGRRAGDMKMASLATYFGLGQQTHRSLDDVLMNLEVLKYCATVL 149
P+ KG ID+L LLT +FGRRAGDMKMASLATYFGLG+QTHRSLDDV MNLEVLKYCATVL
Sbjct: 124 PENKGIIDTLALLTHKFGRRAGDMKMASLATYFGLGKQTHRSLDDVRMNLEVLKYCATVL 183
Query: 150 LLESSLPDIFTGNGCVSQNATARSRINVRSSPEGTSQNLSAPSSKFKFENASNVSPPDQG 209
LESSLPD F VS NAT RSR N +S E ++ APSS KFE N+S
Sbjct: 184 FLESSLPDAFPEKSWVSPNATTRSRKNGKSPLERPGTDVDAPSSSSKFE---NISLAGHE 240
Query: 210 KEGIHPIFTLVTQGTGELDSVLAVTTADQPNPFDMSQLSNQMETQSLQPDDTMEDKSAPE 269
E HPI L+T SV + TT Q +PFDM LSN+M T SLQ D TME+KS E
Sbjct: 241 PERSHPIIYLLT-------SVGSNTT--QTDPFDMGTLSNEMTTSSLQQDVTMEEKSLTE 291
Query: 270 SREMCSTASVSEGSSGYAGFMEPDEVSITSISAA 303
S EM S +V +G S YAGF+E ++VSI+SI A+
Sbjct: 292 SSEMPSLVTVRDGGSAYAGFLETEKVSISSIRAS 325
>gi|297733948|emb|CBI15195.3| unnamed protein product [Vitis vinifera]
Length = 447
Score = 293 bits (749), Expect = 9e-77, Method: Compositional matrix adjust.
Identities = 172/332 (51%), Positives = 199/332 (59%), Gaps = 65/332 (19%)
Query: 1 MGPTQDRSEIVFFDVETTFPIR-----HIWEFGAILVCPRKLEELDKYTTLVRPADPSLV 55
MGP ++RSEI FFDVETT P R I EFGAILVCPRKL EL+ Y+TLVRP D SLV
Sbjct: 1 MGPGEERSEIAFFDVETTVPTRVGQGFAILEFGAILVCPRKLVELESYSTLVRPHDLSLV 60
Query: 56 SNLCARRNDITPEDVFSAPTFADIADTVFDILQ--------------------------- 88
S+L R N IT + V SAP F DIAD V+DIL
Sbjct: 61 SSLSVRCNGITRDAVVSAPNFRDIADRVYDILHGRIWAGHNILRFDCARIREAFAEIGRP 120
Query: 89 APKPKGTIDSLNLLTERFGRRAGDMKMASLATYFGLGQQTHRSLDDVLMNLEVLKYCATV 148
AP+PKG+IDSL LLT+RFGRRAGDMKMA+LATYFGLGQQTHRSLDDV MNLEVLKYCATV
Sbjct: 121 APEPKGSIDSLALLTQRFGRRAGDMKMATLATYFGLGQQTHRSLDDVRMNLEVLKYCATV 180
Query: 149 LLLESSLPDIFTGNGCVSQNATARSRINVRSSPEGTSQNLSAPSSKFKFENASNVSPPDQ 208
L LESSLPDIFT N VS NA RSR N ++SP G + N+S PSS KFEN +
Sbjct: 181 LFLESSLPDIFTTNSWVSPNAVTRSRSNGKASPVGMNLNMSTPSSSIKFEN--HSISSPS 238
Query: 209 GKEGIHPIFTLVTQGTGELDSVLAVTTADQPNPFDMSQLSNQMETQSLQPDDTMEDKSAP 268
+ I LV T +QP+PF++ +K
Sbjct: 239 THSSMEGILNLVEPNT------------NQPDPFNL-------------------EKPVT 267
Query: 269 ESREMCSTASVSEGSSGYAGFMEPDEVSITSI 300
ES EM ST + S+ YAGF++P EVS+ SI
Sbjct: 268 ESLEMLSTTTASQDCCDYAGFLDPAEVSVASI 299
>gi|356562862|ref|XP_003549687.1| PREDICTED: uncharacterized protein LOC100818863 [Glycine max]
Length = 501
Score = 263 bits (671), Expect = 9e-68, Method: Compositional matrix adjust.
Identities = 156/332 (46%), Positives = 205/332 (61%), Gaps = 40/332 (12%)
Query: 5 QDRSEIVFFDVETTFPIR-----HIWEFGAILVCPRKLEELDKYTTLVRPADPSLVSNLC 59
+DRSEIVFFDVET+ P R + EFGAILVCP+ L EL Y+TLVRPA+ S++S L
Sbjct: 3 EDRSEIVFFDVETSVPTRTGQGFALLEFGAILVCPKTLTELRNYSTLVRPANLSVISPLS 62
Query: 60 ARRNDITPEDVFSAPTFADIADTVFDILQA---------------------------PKP 92
R N IT V +AP+FADIA V+D+L P+P
Sbjct: 63 ERCNGITAAAVSAAPSFADIAHLVYDLLHGRIWAGHNIIRFDCVRIRDAFAEINQPPPEP 122
Query: 93 KGTIDSLNLLTERFGRRAGDMKMASLATYFGLGQQTHRSLDDVLMNLEVLKYCATVLLLE 152
KGTIDSL LLT++FGRRAGDMKMA+LATYFGLG+QTHRSLDDV MNLEVLKYCATVL LE
Sbjct: 123 KGTIDSLVLLTQKFGRRAGDMKMATLATYFGLGRQTHRSLDDVRMNLEVLKYCATVLFLE 182
Query: 153 SSLPDIFTGNGCVSQNATARSRINVRSSPEGTSQNLSAPSSKFKFENASNVSPPDQGKEG 212
SSLPDIFT N VS N+ RSR N +S +G N++ +++ SP + K+
Sbjct: 183 SSLPDIFTANSWVSPNSITRSRSNEKSLSQGGLLNIN--------KDSVLSSPATESKDK 234
Query: 213 IHPIFTLVTQGTGELDSVLAVTTADQPNPFDMSQLSNQMETQSLQPDDTMEDKSAPESRE 272
HPI + +A DQ +PF++S L +++ +S++ D ME+K+ ES +
Sbjct: 235 NHPIISFALSSLKGNVPNIADPNIDQSDPFNLSALEAEIKRESIKSDAAMEEKTMQESPD 294
Query: 273 MCSTASVSEGSSGYAGFMEPDEVSITSISAAV 304
+ S++SVS+ S +EPD + I I A++
Sbjct: 295 LASSSSVSQPCSSSIAVLEPDGICIPFIDASL 326
>gi|356512002|ref|XP_003524710.1| PREDICTED: uncharacterized protein LOC100788659 [Glycine max]
Length = 501
Score = 259 bits (663), Expect = 8e-67, Method: Compositional matrix adjust.
Identities = 156/332 (46%), Positives = 204/332 (61%), Gaps = 40/332 (12%)
Query: 5 QDRSEIVFFDVETTFPIRH-----IWEFGAILVCPRKLEELDKYTTLVRPADPSLVSNLC 59
++RSEIVFFDVET+ P R + EFGAILVCPR L EL Y+TLVRPA+ S+++ L
Sbjct: 3 EERSEIVFFDVETSVPTRAGQGFALLEFGAILVCPRTLTELRDYSTLVRPANLSVITPLS 62
Query: 60 ARRNDITPEDVFSAPTFADIADTVFDILQA---------------------------PKP 92
R N I V +APTFADIA V+D+L P+P
Sbjct: 63 ERCNGINAAAVSAAPTFADIAHLVYDLLHGRIWAGHNIIRFDCVRIRDAFAEINQPPPEP 122
Query: 93 KGTIDSLNLLTERFGRRAGDMKMASLATYFGLGQQTHRSLDDVLMNLEVLKYCATVLLLE 152
KGTIDSL LLT++FGRRAGDMKMA+LATYFGLG+QTHRSLDDV MNLEVLKYCATVL LE
Sbjct: 123 KGTIDSLVLLTQKFGRRAGDMKMATLATYFGLGRQTHRSLDDVRMNLEVLKYCATVLFLE 182
Query: 153 SSLPDIFTGNGCVSQNATARSRINVRSSPEGTSQNLSAPSSKFKFENASNVSPPDQGKEG 212
SSLPDIFT N VS NAT RSR N +S + N++ +++ SP + K+
Sbjct: 183 SSLPDIFTANSWVSPNATTRSRSNGKSPSQWGLLNIN--------KDSVLSSPATESKDK 234
Query: 213 IHPIFTLVTQGTGELDSVLAVTTADQPNPFDMSQLSNQMETQSLQPDDTMEDKSAPESRE 272
PI + S +A DQ +PF++S L +++ +S++ D +E+K ES +
Sbjct: 235 NRPIISFALSSPKGNVSNIADPNMDQSDPFNLSTLEAEIKRESIKSDVALEEKPMQESTD 294
Query: 273 MCSTASVSEGSSGYAGFMEPDEVSITSISAAV 304
+ S++SVS+ S +EPD + I SI A++
Sbjct: 295 LASSSSVSQPCSSSIAVLEPDGICIPSIDASL 326
>gi|224124082|ref|XP_002330100.1| predicted protein [Populus trichocarpa]
gi|222871234|gb|EEF08365.1| predicted protein [Populus trichocarpa]
Length = 470
Score = 258 bits (658), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 155/330 (46%), Positives = 191/330 (57%), Gaps = 70/330 (21%)
Query: 5 QDRSEIVFFDVETTFPIR-----HIWEFGAILVCPRKLEELDKYTTLVRPADPSLVSNLC 59
++++EI FFDVETT P R I EFGAILVCP+KLEE+ Y+TLVRP++P L+S+L
Sbjct: 2 ENKTEIAFFDVETTVPTRPGQGYAILEFGAILVCPQKLEEIRSYSTLVRPSNPKLISSLS 61
Query: 60 ARRNDITPEDVFSAPTFADIADTVFDILQ---------------------------APKP 92
R N I PE V SAP+FADIADTV+DIL AP+P
Sbjct: 62 VRCNGIIPEAVVSAPSFADIADTVYDILHGRIWAGHNIVRFDCVRIREAFAEIGRAAPEP 121
Query: 93 KGTIDSLNLLTERFGRRAGDMKMASLATYFGLGQQTHRSLDDVLMNLEVLKYCATVLLLE 152
KGTIDSL LLT++FGRRAG+MKMASLATYFGLG QTHRSLDDV MN+EVLK+CATVL L
Sbjct: 122 KGTIDSLALLTQKFGRRAGNMKMASLATYFGLGNQTHRSLDDVRMNVEVLKHCATVLFLN 181
Query: 153 SSLPDIFTGNGCVSQNATARSRINVRSSPEGTSQNLSAPSSKFKFENASNVSPPDQGKEG 212
S S +V+S+P +SP + E
Sbjct: 182 SPS-----------------SSSHVKSTPA--------------------LSPENDRTEE 204
Query: 213 IHPIFTLVTQGTGELDSVLAVTTADQPNPFDMSQLSNQMETQSLQPDDTMEDKSAPESRE 272
P+F+L+T T E +A TA P+ FDM L N+M S QPD ME+ + E
Sbjct: 205 KRPVFSLLTSNTAEAQYSVASNTA-HPDTFDMVALGNEMNAASFQPDVAMEENPILQPPE 263
Query: 273 MCSTASVSEGSSGYAGFMEPDEVSITSISA 302
M ST +V E S GF+E DEVS++SI A
Sbjct: 264 MPSTVTVPESCSDVLGFLELDEVSLSSIRA 293
>gi|42568689|ref|NP_200947.3| exonuclease-like protein [Arabidopsis thaliana]
gi|111074224|gb|ABH04485.1| At5g61390 [Arabidopsis thaliana]
gi|332010078|gb|AED97461.1| exonuclease-like protein [Arabidopsis thaliana]
Length = 487
Score = 252 bits (643), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 152/336 (45%), Positives = 191/336 (56%), Gaps = 68/336 (20%)
Query: 1 MGPTQDRSEIVFFDVETTFPIR-----HIWEFGAILVCPRKLEELDKYTTLVRPADPSLV 55
+ P +DRSEI FFDVETT P R I EFG+ILVCP+KL EL Y+ LVRPA+ +L+
Sbjct: 7 LTPAEDRSEIAFFDVETTIPFRVGQGYAILEFGSILVCPKKLVELKNYSVLVRPANLNLI 66
Query: 56 SNLCARRNDITPEDVFSAPTFADIADTVFDILQA-------------------------- 89
+ + N I EDV SA TFADIADTV+DIL
Sbjct: 67 TPRSVKCNGIKREDVESALTFADIADTVYDILHGRIWAGHNILKFDCPRIREAFAEIGRD 126
Query: 90 -PKPKGTIDSLNLLTERFGRRAGDMKMASLATYFGLGQQTHRSLDDVLMNLEVLKYCATV 148
P+PKGTIDSL LLT+RFGRRAGDMKMA+LATYFGLG QTHRSLDDV MN EVLKYCATV
Sbjct: 127 PPEPKGTIDSLALLTQRFGRRAGDMKMATLATYFGLGNQTHRSLDDVRMNFEVLKYCATV 186
Query: 149 LLLESSLPDIFTGNGCVSQN--ATARSRINVRSSPEGTSQNLSAPSSKFKFENASNVSPP 206
L LESSLPD N + ++R R ++ SP L +P+ + EN + +
Sbjct: 187 LFLESSLPDELIENSVTTTTPETSSRRRRTIKKSP------LQSPTDQQTGENMTTI--- 237
Query: 207 DQGKEGIHPIFTLVTQGTGELDSVLAVTTADQPNPFDMSQLSNQMETQSLQPDDTMEDKS 266
PI + V+ + D PFDMS L N++ + LQ D ME++
Sbjct: 238 --------PILSFVSSAEAQTD------------PFDMSTLRNEIAPEVLQSDVPMEEEQ 277
Query: 267 APESREMCSTASVSEGSSGYAGFMEPDEVSITSISA 302
+S + SEG+ GFME D++S++SI A
Sbjct: 278 NQQSETVA-----SEGTGDQEGFMELDKISVSSIRA 308
>gi|297797093|ref|XP_002866431.1| exonuclease family protein [Arabidopsis lyrata subsp. lyrata]
gi|297312266|gb|EFH42690.1| exonuclease family protein [Arabidopsis lyrata subsp. lyrata]
Length = 484
Score = 251 bits (640), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 152/332 (45%), Positives = 192/332 (57%), Gaps = 68/332 (20%)
Query: 5 QDRSEIVFFDVETTFPIRH-----IWEFGAILVCPRKLEELDKYTTLVRPADPSLVSNLC 59
+DRSEI FFDVETT P R I EFG+ILVCP+KL EL Y+ LVRPA+ +L++
Sbjct: 8 EDRSEIAFFDVETTIPFRAGQGYAILEFGSILVCPKKLVELRNYSVLVRPANLNLITPRS 67
Query: 60 ARRNDITPEDVFSAPTFADIADTVFDILQA---------------------------PKP 92
+ N I EDV SA TFADIADTV+DIL P+P
Sbjct: 68 VKCNGIKREDVESAATFADIADTVYDILHGRIWAGHNILKFDCPRISEAFAEIGRDPPEP 127
Query: 93 KGTIDSLNLLTERFGRRAGDMKMASLATYFGLGQQTHRSLDDVLMNLEVLKYCATVLLLE 152
KGTIDSL LLT+RFGRRAGDMKMA+LA+YFGLG QTHRSLDDV MNLEVLKYCATVL LE
Sbjct: 128 KGTIDSLALLTQRFGRRAGDMKMATLASYFGLGNQTHRSLDDVRMNLEVLKYCATVLFLE 187
Query: 153 SSLPDIFTGNGCVSQ--NATARSRINVRSSPEGTSQNLSAPSSKFKFENASNVSPPDQGK 210
SSLPD N + ++R R N+++SP L +P+ EN++ +
Sbjct: 188 SSLPDELIENSVTTTTPETSSRRRRNIKTSP------LQSPADHQTGENSTTI------- 234
Query: 211 EGIHPIFTLVTQGTGELDSVLAVTTADQPNPFDMSQLSNQMETQSLQPDDTMEDKSAPES 270
PI + V+ + D PFDMS L N++ + LQ D ME++ +S
Sbjct: 235 ----PILSFVSSAEAQTD------------PFDMSTLRNEIAPEVLQSDVPMEEEQNQQS 278
Query: 271 REMCSTASVSEGSSGYAGFMEPDEVSITSISA 302
+ SEG+ GF+E D++SI+SI A
Sbjct: 279 ETV-----TSEGTCDQEGFLELDKMSISSIRA 305
>gi|449440810|ref|XP_004138177.1| PREDICTED: uncharacterized protein LOC101203629 [Cucumis sativus]
Length = 471
Score = 247 bits (631), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 157/338 (46%), Positives = 200/338 (59%), Gaps = 77/338 (22%)
Query: 1 MGPTQDRSEIVFFDVETTFPIRH-----IWEFGAILVCPRKLEELDKYTTLVRPADPSLV 55
MGPT+DRSEI FFDVETT P R I EFGAILVCP+KL EL+ Y+TLV+P+D SL+
Sbjct: 1 MGPTEDRSEIAFFDVETTVPTRQGQKFSILEFGAILVCPKKLVELESYSTLVKPSDLSLI 60
Query: 56 SNLCARRNDITPEDVFSAPTFADIADTVFDILQ--------------------------- 88
S+L R N IT + V S+PTFA IAD V+DIL
Sbjct: 61 SSLSVRCNGITRDAVISSPTFAQIADRVYDILHGRIWAGHNILRFDCARIREAFAEIGVP 120
Query: 89 APKPKGTIDSLNLLTERFGRRAGDMKMASLATYFGLGQQTHRSLDDVLMNLEVLKYCATV 148
AP+PKGTIDSL LLT+RFGRRAGDMKMA+LA+YFG+GQQTHRSLDDV MNLEVLKYCATV
Sbjct: 121 APEPKGTIDSLALLTQRFGRRAGDMKMATLASYFGIGQQTHRSLDDVRMNLEVLKYCATV 180
Query: 149 LLLESSLPDIFTGNGCVSQNATARSRINVRSSPEGTSQNLSAPSSKFKFENASNVSPPDQ 208
L LESSLP++F N VS NA R R +SSP+G + + D+
Sbjct: 181 LFLESSLPEVFPENSWVSPNAVTRRR-AAKSSPQGNT-----------------ICSEDR 222
Query: 209 GKEGIHPIFTLVTQGTGELDSVLAVTTADQPNPFDMSQLSNQMETQSLQPDDTMEDKSAP 268
S+LA +A + + F+M S+Q+ +L+ D ME+ +
Sbjct: 223 A-------------------SILAEPSATESDSFNMHTTSDQITGATLETDINMEEHAT- 262
Query: 269 ESREMCSTASVSEGSSG---YAGFMEPDEVSITSISAA 303
+ + AS SE +S F+EPD+VS++ I+A+
Sbjct: 263 ----VSTEASPSEDTSTSLCTTKFLEPDQVSVSFITAS 296
>gi|9757860|dbj|BAB08494.1| exonuclease-like protein [Arabidopsis thaliana]
Length = 500
Score = 241 bits (616), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 152/352 (43%), Positives = 191/352 (54%), Gaps = 84/352 (23%)
Query: 1 MGPTQDRSEIVFFDVETTFPIR-----HIWEFGAILVCPRKLEELDKYTTLVRPADPSLV 55
+ P +DRSEI FFDVETT P R I EFG+ILVCP+KL EL Y+ LVRPA+ +L+
Sbjct: 4 LTPAEDRSEIAFFDVETTIPFRVGQGYAILEFGSILVCPKKLVELKNYSVLVRPANLNLI 63
Query: 56 SNLCARRNDITPEDVFSAPTFADIADTVFDILQA-------------------------- 89
+ + N I EDV SA TFADIADTV+DIL
Sbjct: 64 TPRSVKCNGIKREDVESALTFADIADTVYDILHGRIWAGHNILKFDCPRIREAFAEIGRD 123
Query: 90 -PKPKGTIDSLNLLTERFGRRAGDMKMASLATYFGLGQQTHRSLDDVLMNLEVLKYCATV 148
P+PKGTIDSL LLT+RFGRRAGDMKMA+LATYFGLG QTHRSLDDV MN EVLKYCATV
Sbjct: 124 PPEPKGTIDSLALLTQRFGRRAGDMKMATLATYFGLGNQTHRSLDDVRMNFEVLKYCATV 183
Query: 149 LLL----------------ESSLPDIFTGNGCVSQ--NATARSRINVRSSPEGTSQNLSA 190
L L ESSLPD N + ++R R ++ SP L +
Sbjct: 184 LFLVCSLYELIQKHAIFQQESSLPDELIENSVTTTTPETSSRRRRTIKKSP------LQS 237
Query: 191 PSSKFKFENASNVSPPDQGKEGIHPIFTLVTQGTGELDSVLAVTTADQPNPFDMSQLSNQ 250
P+ + EN + + PI + V+ + D PFDMS L N+
Sbjct: 238 PTDQQTGENMTTI-----------PILSFVSSAEAQTD------------PFDMSTLRNE 274
Query: 251 METQSLQPDDTMEDKSAPESREMCSTASVSEGSSGYAGFMEPDEVSITSISA 302
+ + LQ D ME++ +S + SEG+ GFME D++S++SI A
Sbjct: 275 IAPEVLQSDVPMEEEQNQQSETVA-----SEGTGDQEGFMELDKISVSSIRA 321
>gi|15240840|ref|NP_196388.1| exonuclease family protein [Arabidopsis thaliana]
gi|9759593|dbj|BAB11450.1| exonuclease-like protein [Arabidopsis thaliana]
gi|332003813|gb|AED91196.1| exonuclease family protein [Arabidopsis thaliana]
Length = 468
Score = 241 bits (615), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 146/332 (43%), Positives = 184/332 (55%), Gaps = 75/332 (22%)
Query: 5 QDRSEIVFFDVETTFPIR----HIWEFGAILVCPRKLEELDKYTTLVRPADPSLVSNLCA 60
+DRSEI FFDVETT P R I EFG+ILVCP+KL EL YTTLV+PAD SL+S+L
Sbjct: 4 EDRSEIAFFDVETTVPKRGQRFAILEFGSILVCPKKLTELRSYTTLVQPADLSLISSLSV 63
Query: 61 RRNDITPEDVFSAPTFADIADTVFDIL---------------------------QAPKPK 93
R N I +DV AP FADIADTV+DIL Q P+PK
Sbjct: 64 RCNGIKRDDVVLAPLFADIADTVYDILHGRIWAGHNILRFDCARIREAFAEIGRQPPEPK 123
Query: 94 GTIDSLNLLTERFGRRAGDMKMASLATYFGLGQQTHRSLDDVLMNLEVLKYCATVLLLES 153
G IDSL LLT++FGRRAGDMKMA+LA YFGLG QTHRSLDDV MNLEVLKYCATVL LES
Sbjct: 124 GAIDSLGLLTQKFGRRAGDMKMATLARYFGLGNQTHRSLDDVRMNLEVLKYCATVLFLES 183
Query: 154 SLPDIFTGNGCVSQNATARSRINVRSSPEGTSQNLSAPSSKFKFENASNVSPPDQGKEGI 213
SLP N + ++R RI+ + ++ PS
Sbjct: 184 SLPYAHVDNSVSPETISSRRRIDASREGNTVTTSVRLPS--------------------- 222
Query: 214 HPIFTLVTQGTGELDSVLAVTTADQPNPFDMSQLSNQMETQS-LQPDDTMEDKSAPESRE 272
++ +A QP+PF+MS L N+M + + +Q D ME++
Sbjct: 223 -----------------ISENSAAQPDPFNMSVLRNEMASDNHIQSDILMEEEQIEP--- 262
Query: 273 MCSTASVSEGSSGYAGFMEPDEVSITSISAAV 304
S SE +S + GF+ PD +S+++I A +
Sbjct: 263 --SDVVASENTSDHEGFLTPDAMSLSNIKAML 292
>gi|297806807|ref|XP_002871287.1| exonuclease family protein [Arabidopsis lyrata subsp. lyrata]
gi|297317124|gb|EFH47546.1| exonuclease family protein [Arabidopsis lyrata subsp. lyrata]
Length = 468
Score = 237 bits (605), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 148/332 (44%), Positives = 182/332 (54%), Gaps = 75/332 (22%)
Query: 5 QDRSEIVFFDVETTFPIR----HIWEFGAILVCPRKLEELDKYTTLVRPADPSLVSNLCA 60
+DRSEI FFDVETT P R I EFG+ILVCP+KL EL YTTLV+PAD SL+S+L
Sbjct: 4 EDRSEIAFFDVETTVPNRGQRFAILEFGSILVCPKKLTELRSYTTLVQPADLSLISSLSV 63
Query: 61 RRNDITPEDVFSAPTFADIADTVFDIL---------------------------QAPKPK 93
R N I +DV AP FADIADTV+DIL Q P+PK
Sbjct: 64 RCNGIKRDDVVLAPLFADIADTVYDILHGRIWAGHNILRFDCARIREAFAEIGRQPPEPK 123
Query: 94 GTIDSLNLLTERFGRRAGDMKMASLATYFGLGQQTHRSLDDVLMNLEVLKYCATVLLLES 153
G IDSL LLT++FGRRAGDMKMA+LA YFGLG QTHRSLDDV MNLEVLKYCATVL LES
Sbjct: 124 GAIDSLGLLTQQFGRRAGDMKMATLARYFGLGNQTHRSLDDVRMNLEVLKYCATVLFLES 183
Query: 154 SLPDIFTGNGCVSQNATARSRINVRSSPEGTSQNLSAPSSKFKFENASNVSPPDQGKEGI 213
SLP + ++R RI+ + ++ PS
Sbjct: 184 SLPYAHVDHSVSPGTTSSRRRIDASHEGNTVTTSVRLPS--------------------- 222
Query: 214 HPIFTLVTQGTGELDSVLAVTTADQPNPFDMSQLSNQMETQS-LQPDDTMEDKSAPESRE 272
++ +A QP+PF+MS L N+M + + LQ D ME E +
Sbjct: 223 -----------------ISENSAAQPDPFNMSILRNEMASDNHLQSDILME-----EEQI 260
Query: 273 MCSTASVSEGSSGYAGFMEPDEVSITSISAAV 304
S V E +S + GF+ PD VS+ +I A +
Sbjct: 261 QPSDIVVPENTSDHEGFLAPDAVSLPNIKAIL 292
>gi|15221225|ref|NP_177579.1| polynucleotidyl transferase, ribonuclease H-like protein
[Arabidopsis thaliana]
gi|12324816|gb|AAG52378.1|AC011765_30 putative exonuclease; 20146-18080 [Arabidopsis thaliana]
gi|20466502|gb|AAM20568.1| putative exonuclease [Arabidopsis thaliana]
gi|23198160|gb|AAN15607.1| putative exonuclease [Arabidopsis thaliana]
gi|332197464|gb|AEE35585.1| polynucleotidyl transferase, ribonuclease H-like protein
[Arabidopsis thaliana]
Length = 506
Score = 225 bits (574), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 143/331 (43%), Positives = 196/331 (59%), Gaps = 42/331 (12%)
Query: 6 DRSEIVFFDVETTFPIRH-----IWEFGAILVCPRKLEELDKYTTLVRPADPSLVSNLCA 60
+RSEI FFD+ET P + I EFGAILVCPR+LEEL Y+TLVRP D SL+S L
Sbjct: 9 ERSEIAFFDLETAVPTKSGEPFAILEFGAILVCPRRLEELYSYSTLVRPTDLSLISTLTK 68
Query: 61 RRNDITPEDVFSAPTFADIADTVFDILQA---------------------------PKPK 93
RR+ IT + V SA TF++IAD V+DIL P+PK
Sbjct: 69 RRSGITRDGVLSAHTFSEIADKVYDILHGRIWAGHNIIRFDCVRIREAFAEIGLSPPEPK 128
Query: 94 GTIDSLNLLTERFGRRAGDMKMASLATYFGLGQQTHRSLDDVLMNLEVLKYCATVLLLES 153
TIDSL+LL+++FG+RAGDMKMASLATYFGLG Q HRSLDDV MNLEV+KYCATVL LES
Sbjct: 129 ATIDSLSLLSQKFGKRAGDMKMASLATYFGLGDQAHRSLDDVRMNLEVVKYCATVLFLES 188
Query: 154 SLPDIFTGNGCVSQNATARSRINVRSSPEGTSQNLSAPSSKFKFENASNVSPPDQGKEGI 213
S+PDI T S + R+R N + G ++ ++ SS K + +S+ K
Sbjct: 189 SVPDILTDMSWFSPRKSPRTRSNGKLVANGVRESSTSSSSSPKTDPSSSSVDATIVKN-- 246
Query: 214 HPIFTLVTQGTGELDSVLAVTTADQPNPFDMSQLSNQMETQSLQPDDTMEDKSAPESREM 273
HPI +L+T+ + E D+ ++ D +P D++ L ++ +LQ D E K+ R+
Sbjct: 247 HPIVSLLTECS-ESDA----SSYDIEDPIDITTLIGKLRIGTLQTDAAEEAKTV---RQQ 298
Query: 274 CSTASVSEGSSGYAGFMEPDEVSITSISAAV 304
+ + + F+ +EVS++SI A++
Sbjct: 299 DESPPSPDSDAKDESFLGVNEVSVSSIRASL 329
>gi|226498878|ref|NP_001148000.1| UTP-glucose-P-uridyltransferase homolog [Zea mays]
gi|194706488|gb|ACF87328.1| unknown [Zea mays]
gi|195615060|gb|ACG29360.1| exonuclease [Zea mays]
gi|413934232|gb|AFW68783.1| exonuclease [Zea mays]
Length = 499
Score = 222 bits (565), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 145/335 (43%), Positives = 179/335 (53%), Gaps = 70/335 (20%)
Query: 3 PTQDRSEIVFFDVETTFPIRH-----IWEFGAILVCPRKLEELDKYTTLVRPADP-SLVS 56
P + +EI FFDVET+ P R + EFGAILVCPR+L E+ Y TLVRPADP S VS
Sbjct: 28 PAEGPTEIAFFDVETSVPQRAGQGYALLEFGAILVCPRRLVEVASYATLVRPADPASAVS 87
Query: 57 NLCARRNDITPEDVFSAPTFADIADTVFDILQA--------------------------- 89
R N IT + V +AP F D+AD V+D+L
Sbjct: 88 AASVRCNGITRDAVSAAPPFRDVADAVYDLLNGRVWAGHNIVRFDSARIREAFTEIGRSP 147
Query: 90 PKPKGTIDSLNLLTERFGRRAGDMKMASLATYFGLGQQTHRSLDDVLMNLEVLKYCATVL 149
P+PKG ID+L LLT+RFGRRAGDMKMASLA YFGLG+Q HRSLDDV MNLEVLKYCATVL
Sbjct: 148 PQPKGMIDTLPLLTQRFGRRAGDMKMASLANYFGLGKQRHRSLDDVRMNLEVLKYCATVL 207
Query: 150 LLESSLPDIFTGNGCVSQNATARSRINVRSSPEGTSQNLSAPSSKFKFENASNVSPPDQG 209
LE+SLP++ T V + A RSR N +SP+ L P + SPPD
Sbjct: 208 FLEASLPEVLTVENLV-ERAMTRSRANGTASPD-----LPKPEAN---------SPPDSS 252
Query: 210 KEGIHPIFTLVTQGTGELDSVLAVTTADQPNPFDMSQLSNQMETQSLQPDDTMEDKSAPE 269
K + +D V M NQ + +++E S E
Sbjct: 253 KR---------QRTVSPVDCV-------------MPAEGNQGTSDPSTNRESVELVSHIE 290
Query: 270 SREMCSTASVSEGSSGYAGFMEPDEVSITSISAAV 304
++ +T V SSGY GF+EPD+VSI I +V
Sbjct: 291 EMKLNTTTHVDASSSGYPGFLEPDDVSIECIKISV 325
>gi|297842185|ref|XP_002888974.1| exonuclease family protein [Arabidopsis lyrata subsp. lyrata]
gi|297334815|gb|EFH65233.1| exonuclease family protein [Arabidopsis lyrata subsp. lyrata]
Length = 506
Score = 222 bits (565), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 144/332 (43%), Positives = 196/332 (59%), Gaps = 44/332 (13%)
Query: 6 DRSEIVFFDVETTFPIRH-----IWEFGAILVCPRKLEELDKYTTLVRPADPSLVSNLCA 60
+RSEI FFD+ET P + I EFGAILVCPRKL EL Y+TLV+P D SL+S L
Sbjct: 9 ERSEIAFFDLETAVPTKSGQPFAILEFGAILVCPRKLVELYSYSTLVQPTDLSLISTLTK 68
Query: 61 RRNDITPEDVFSAPTFADIADTVFDILQA---------------------------PKPK 93
RR+ IT + V SAPTF++IAD V+DIL P+PK
Sbjct: 69 RRSGITRDGVLSAPTFSEIADEVYDILHGRIWAGHNIKRFDCVRIRDAFAEIGLCPPEPK 128
Query: 94 GTIDSLNLLTERFGRRAGDMKMASLATYFGLGQQTHRSLDDVLMNLEVLKYCATVLLLES 153
TIDSL+LL+++FG+RAGDMKMASLATYFGLG Q HRSLDDV MNLEV+KYCATVL LES
Sbjct: 129 ATIDSLSLLSQKFGKRAGDMKMASLATYFGLGDQAHRSLDDVRMNLEVVKYCATVLFLES 188
Query: 154 SLPDIFTGNGCVSQNATARS-RINVRSSPEGTSQNLSAPSSKFKFENASNVSPPDQGKEG 212
S+PDI T S + R+ R N S +G ++ ++ SS K + ++S D
Sbjct: 189 SVPDILTDMSWFSPRKSPRARRSNEESVRDGVRESSTSSSSSPKTD--PSLSSADATIVK 246
Query: 213 IHPIFTLVTQGTGELDSVLAVTTADQPNPFDMSQLSNQMETQSLQPDDTMEDKSAPESRE 272
HPI +L+T+ + E D T++ + +P D++ L +++ +LQ D E K+ + E
Sbjct: 247 NHPIVSLLTECS-ESD-----TSSCEIDPSDITTLISKLHIGTLQTDAADEAKTVRQQGE 300
Query: 273 MCSTASVSEGSSGYAGFMEPDEVSITSISAAV 304
+ + G +EVS++SI A++
Sbjct: 301 SPPSPDTDAKDDSFLGV---NEVSVSSIRASL 329
>gi|242039735|ref|XP_002467262.1| hypothetical protein SORBIDRAFT_01g022250 [Sorghum bicolor]
gi|241921116|gb|EER94260.1| hypothetical protein SORBIDRAFT_01g022250 [Sorghum bicolor]
Length = 505
Score = 220 bits (561), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 145/335 (43%), Positives = 180/335 (53%), Gaps = 70/335 (20%)
Query: 3 PTQDRSEIVFFDVETTFPIRH-----IWEFGAILVCPRKLEELDKYTTLVRPADP-SLVS 56
P + EI FFDVET+ P R + EFGAILVCPR+L E+ Y TLVRPADP S VS
Sbjct: 34 PGEGGPEIAFFDVETSVPQRAGQGYALLEFGAILVCPRRLVEVASYATLVRPADPVSAVS 93
Query: 57 NLCARRNDITPEDVFSAPTFADIADTVFDILQA--------------------------- 89
R N IT + V AP F D+AD V+D+L
Sbjct: 94 AASVRCNGITRDAVSGAPPFRDVADAVYDLLNGRVWAGHNIVRFDSARIREAFTEIGRSP 153
Query: 90 PKPKGTIDSLNLLTERFGRRAGDMKMASLATYFGLGQQTHRSLDDVLMNLEVLKYCATVL 149
P+PKG ID+L LLT+RFGRRAGDMKMASLA YFGLG+Q HRSLDDV MNLEVLKYCATVL
Sbjct: 154 PQPKGMIDTLPLLTQRFGRRAGDMKMASLANYFGLGKQRHRSLDDVRMNLEVLKYCATVL 213
Query: 150 LLESSLPDIFTGNGCVSQNATARSRINVRSSPEGTSQNLSAPSSKFKFENASNVSPPDQG 209
LE+SLP++ T V + AT RSR N SP+ L P + SPPD
Sbjct: 214 FLEASLPEVLTVENLV-ERATTRSRANGIVSPD-----LPKPEAN---------SPPDSS 258
Query: 210 KEGIHPIFTLVTQGTGELDSVLAVTTADQPNPFDMSQLSNQMETQSLQPDDTMEDKSAPE 269
K + +DSV+ + NQ + +++E S E
Sbjct: 259 KR---------QRIVSPIDSVIP-------------EEGNQRTSGPSTNRESVELVSHIE 296
Query: 270 SREMCSTASVSEGSSGYAGFMEPDEVSITSISAAV 304
++ +T + SSGY+GF+EPD+VSI I +V
Sbjct: 297 EMKLDTTTHMDASSSGYSGFLEPDDVSIECIEISV 331
>gi|357146112|ref|XP_003573879.1| PREDICTED: uncharacterized protein LOC100834632 [Brachypodium
distachyon]
Length = 492
Score = 210 bits (535), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 140/338 (41%), Positives = 173/338 (51%), Gaps = 75/338 (22%)
Query: 2 GPTQDRSEIVFFDVETTFPIR-----HIWEFGAILVCPRKLEELDKYTTLVRPADPSLVS 56
P EI FFDVET+ P R + EFGAILVCPR+L E+ Y TLVRP D +VS
Sbjct: 21 APVAGGPEIAFFDVETSVPQRTGQGYALLEFGAILVCPRRLVEVACYATLVRPNDLGVVS 80
Query: 57 NLCARRNDITPEDVFSAPTFADIADTVFDILQA--------------------------- 89
R N IT + V AP F D+AD V+D+L
Sbjct: 81 AASVRCNGITRDAVAGAPGFRDVADAVYDVLHGRVWAGHNIVRFDLPRIREAFTEIGRSP 140
Query: 90 PKPKGTIDSLNLLTERFGRRAGDMKMASLATYFGLGQQTHRSLDDVLMNLEVLKYCATVL 149
P+PKGTID+L LLT+RFGRRAGDMKMASLA YFGLG+Q HRSLDDV MNL+VLKYCATVL
Sbjct: 141 PEPKGTIDTLPLLTQRFGRRAGDMKMASLANYFGLGRQKHRSLDDVRMNLDVLKYCATVL 200
Query: 150 LLESSLPDIFTGNGCVSQNATARSRINVRSSPEGTSQNL-SAPSSKFKFENASNV--SPP 206
LE+SLP++ T + + A RS+ N +SPE + S+P S + S V S P
Sbjct: 201 FLEASLPEVLTVENLL-ERAITRSKANGATSPEAPKPDATSSPDSSKRQRTVSRVNNSIP 259
Query: 207 DQGKEGIHPIFTLVTQGTGELDSVLAVTTADQPNPFDMSQLSNQMETQSLQPDDTMEDKS 266
D + T D + SQL + +E L D TM+
Sbjct: 260 DGDNQ----------------------ETVDLATNNESSQLISHIEEMKL--DGTMK--- 292
Query: 267 APESREMCSTASVSEGSSGYAGFMEPDEVSITSISAAV 304
+ SSGY+GF+EP +VS I V
Sbjct: 293 ------------MDASSSGYSGFLEPQDVSTVCIKICV 318
>gi|125531875|gb|EAY78440.1| hypothetical protein OsI_33531 [Oryza sativa Indica Group]
Length = 482
Score = 209 bits (532), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 134/318 (42%), Positives = 169/318 (53%), Gaps = 59/318 (18%)
Query: 9 EIVFFDVETTFPIRH-----IWEFGAILVCPRKLEELDKYTTLVRPADPSLVSNLCARRN 63
EI FFDVET+ P R + EFGAILVCPR+L + Y TLVRP D +VS R N
Sbjct: 28 EIAFFDVETSVPQRAGQGYALLEFGAILVCPRRLVVVGSYATLVRPGDLGVVSAASVRCN 87
Query: 64 DITPEDVFSAPTFADIADTVFDILQA-----------------PKPKGTIDSLNLLTERF 106
IT + V +AP F D+AD V+ +L P+PKG ID+L LLT++F
Sbjct: 88 GITRDAVAAAPAFRDVADAVYSVLHGLTRTRIREAFAEIGRPPPEPKGMIDTLPLLTQKF 147
Query: 107 GRRAGDMKMASLATYFGLGQQTHRSLDDVLMNLEVLKYCATVLLLESSLPDIFTGNGCVS 166
GRRAGDMKMASLA YFGLG+Q+HRSLDDV MNLEVLKYCATVL LE+SLP + T V
Sbjct: 148 GRRAGDMKMASLANYFGLGRQSHRSLDDVRMNLEVLKYCATVLFLEASLPGVLTVENLV- 206
Query: 167 QNATARSRINVRSSPEGTSQNLSAPSSKFKFENASNVSPPDQGKEGIHPIFTLVTQGTGE 226
+ A RS+ N +SPE + P ++ S PD K
Sbjct: 207 ERAITRSQANGAASPE-----VPKPVAR---------SSPDSSK---------------R 237
Query: 227 LDSVLAVTTADQPNPFDMSQLSNQMETQSLQPDDTMEDKSAPESREMCSTASVSEGSSGY 286
++ V A Q NQ + +E S E + S + SSG+
Sbjct: 238 QRTISRVDNAIQAG-------GNQQSIDPATNKEPIELISNIEEMTLGSGIQIDASSSGF 290
Query: 287 AGFMEPDEVSITSISAAV 304
+GF+EPD+VS SI +V
Sbjct: 291 SGFLEPDDVSTESIQISV 308
>gi|15451563|gb|AAK98687.1|AC021893_21 Putative exonuclease [Oryza sativa Japonica Group]
gi|31432001|gb|AAP53700.1| exonuclease family protein, putative, expressed [Oryza sativa
Japonica Group]
Length = 493
Score = 205 bits (521), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 134/328 (40%), Positives = 169/328 (51%), Gaps = 69/328 (21%)
Query: 9 EIVFFDVETTFPIRH-----IWEFGAILVCPRKLEELDKYTTLVRPADPSLVSNLCARRN 63
EI FFDVET+ P R + EFGAILVCPR+L + Y TLVRP D +VS R N
Sbjct: 29 EIAFFDVETSVPQRAGQGYALLEFGAILVCPRRLVVVGSYATLVRPGDLGVVSAASVRCN 88
Query: 64 DITPEDVFSAPTFADIADTVFDILQA---------------------------PKPKGTI 96
IT + V +AP F D+AD V+ +L P+PKG I
Sbjct: 89 GITRDAVAAAPAFRDVADAVYSVLHGRVWAGHNIVRFDLARIREAFAEIGRPPPEPKGMI 148
Query: 97 DSLNLLTERFGRRAGDMKMASLATYFGLGQQTHRSLDDVLMNLEVLKYCATVLLLESSLP 156
D+L LLT++FGRRAGDMKMASLA YFGLG+Q+HRSLDDV MNLEVLKYCATVL LE+SLP
Sbjct: 149 DTLPLLTQKFGRRAGDMKMASLANYFGLGRQSHRSLDDVRMNLEVLKYCATVLFLEASLP 208
Query: 157 DIFTGNGCVSQNATARSRINVRSSPEGTSQNLSAPSSKFKFENASNVSPPDQGKEGIHPI 216
+ T V + A RS+ N +SPE + P ++ S PD K
Sbjct: 209 GVLTVENLV-ERAITRSQANGAASPE-----VPKPVAR---------SSPDSSKRQ---- 249
Query: 217 FTLVTQGTGELDSVLAVTTADQPNPFDMSQLSNQMETQSLQPDDTMEDKSAPESREMCST 276
++ V A Q NQ + +E S E + S
Sbjct: 250 -----------RTISRVDNAIQAG-------GNQQSIDPATNKEPIELISNIEEMTLGSG 291
Query: 277 ASVSEGSSGYAGFMEPDEVSITSISAAV 304
+ SSG++GF+EPD+VS SI +V
Sbjct: 292 IQIDASSSGFSGFLEPDDVSTESIQISV 319
>gi|297610461|ref|NP_001064570.2| Os10g0407500 [Oryza sativa Japonica Group]
gi|255679392|dbj|BAF26484.2| Os10g0407500 [Oryza sativa Japonica Group]
Length = 517
Score = 203 bits (516), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 134/332 (40%), Positives = 169/332 (50%), Gaps = 73/332 (21%)
Query: 9 EIVFFDVETTFPIRH-----IWEFGAILVCPRKLEELDKYTTLVRPADPSLVSNLCARRN 63
EI FFDVET+ P R + EFGAILVCPR+L + Y TLVRP D +VS R N
Sbjct: 29 EIAFFDVETSVPQRAGQGYALLEFGAILVCPRRLVVVGSYATLVRPGDLGVVSAASVRCN 88
Query: 64 DITPEDVFSAPTFADIADTVFDILQA-------------------------------PKP 92
IT + V +AP F D+AD V+ +L P+P
Sbjct: 89 GITRDAVAAAPAFRDVADAVYSVLHEFSIGRVWAGHNIVRFDLARIREAFAEIGRPPPEP 148
Query: 93 KGTIDSLNLLTERFGRRAGDMKMASLATYFGLGQQTHRSLDDVLMNLEVLKYCATVLLLE 152
KG ID+L LLT++FGRRAGDMKMASLA YFGLG+Q+HRSLDDV MNLEVLKYCATVL LE
Sbjct: 149 KGMIDTLPLLTQKFGRRAGDMKMASLANYFGLGRQSHRSLDDVRMNLEVLKYCATVLFLE 208
Query: 153 SSLPDIFTGNGCVSQNATARSRINVRSSPEGTSQNLSAPSSKFKFENASNVSPPDQGKEG 212
+SLP + T V + A RS+ N +SPE + P ++ S PD K
Sbjct: 209 ASLPGVLTVENLV-ERAITRSQANGAASPE-----VPKPVAR---------SSPDSSKRQ 253
Query: 213 IHPIFTLVTQGTGELDSVLAVTTADQPNPFDMSQLSNQMETQSLQPDDTMEDKSAPESRE 272
++ V A Q NQ + +E S E
Sbjct: 254 ---------------RTISRVDNAIQAG-------GNQQSIDPATNKEPIELISNIEEMT 291
Query: 273 MCSTASVSEGSSGYAGFMEPDEVSITSISAAV 304
+ S + SSG++GF+EPD+VS SI +V
Sbjct: 292 LGSGIQIDASSSGFSGFLEPDDVSTESIQISV 323
>gi|296082445|emb|CBI21450.3| unnamed protein product [Vitis vinifera]
Length = 303
Score = 202 bits (514), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 124/268 (46%), Positives = 153/268 (57%), Gaps = 35/268 (13%)
Query: 4 TQDRS-EIVFFDVETTFPIR---HIW--EFGAILVCPRKLEELDKYTTLVRPADPSLVSN 57
+Q+R+ EIVFFD+ETT P R W EFGAI+VCPRKL EL+ Y+TL+RP D S V+
Sbjct: 8 SQERAAEIVFFDLETTVPNRAGQRFWVLEFGAIVVCPRKLVELESYSTLIRPGDLSAVAL 67
Query: 58 LCARRNDITPEDVFSAPTFADIADTVFDILQ---------------------------AP 90
R + IT E V AP F ++AD +F IL AP
Sbjct: 68 RSGRSDGITREVVAGAPGFEEVADQIFSILNGRVWAGHNIQRFDCVRIKEAFAEIGRAAP 127
Query: 91 KPKGTIDSLNLLTERFGRRAGDMKMASLATYFGLGQQTHRSLDDVLMNLEVLKYCATVLL 150
P G IDSL +LTE+FGRRAG+MKMA+LATYFGLGQQ HRSLDDV MNLEVLK+CATVL
Sbjct: 128 VPVGMIDSLGVLTEKFGRRAGNMKMATLATYFGLGQQKHRSLDDVRMNLEVLKHCATVLF 187
Query: 151 LESSLPDIFTGNGCVSQNATARSRINVRSSPEGTSQNLSAPSSKFKFENASNVSPPDQGK 210
LESSLP + +G S T RSR N + S S P++ ++ A + GK
Sbjct: 188 LESSLPSVLSGKWHDSTTITTRSRSNGKLMCREESSRKS-PTTSLGYQRAVPYARGGLGK 246
Query: 211 EGIHPIFTLVTQGTGELDSVLAVTTADQ 238
P F+L+ G L L + Q
Sbjct: 247 VSSFP-FSLLKNLHGYLSMPLTNNKSKQ 273
>gi|147791948|emb|CAN61478.1| hypothetical protein VITISV_013817 [Vitis vinifera]
Length = 293
Score = 202 bits (513), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 111/206 (53%), Positives = 131/206 (63%), Gaps = 33/206 (16%)
Query: 4 TQDRS-EIVFFDVETTFPIR---HIW--EFGAILVCPRKLEELDKYTTLVRPADPSLVSN 57
+Q+R+ EIVFFD+ETT P R W EFGAI+VCPRKL EL+ Y+TL+RP D S V+
Sbjct: 41 SQERAAEIVFFDLETTVPNRAGQRFWVLEFGAIVVCPRKLVELESYSTLIRPGDLSAVAL 100
Query: 58 LCARRNDITPEDVFSAPTFADIADTVFDILQ---------------------------AP 90
R + IT E V AP F ++AD +F IL AP
Sbjct: 101 RSGRSDGITREVVAGAPGFEEVADQIFSILNGRVWAGHNIQRFDCVRIKEAFAEIGRAAP 160
Query: 91 KPKGTIDSLNLLTERFGRRAGDMKMASLATYFGLGQQTHRSLDDVLMNLEVLKYCATVLL 150
P G IDSL +LTE+FGRRAG+MKMA+LATYFGLGQQ HRSLDDV MNLEVLK+CATVL
Sbjct: 161 VPVGMIDSLGVLTEKFGRRAGNMKMATLATYFGLGQQKHRSLDDVRMNLEVLKHCATVLF 220
Query: 151 LESSLPDIFTGNGCVSQNATARSRIN 176
LESSLP + +G S T RSR N
Sbjct: 221 LESSLPSVLSGKWHDSTTITTRSRSN 246
>gi|334183910|ref|NP_001185397.1| polynucleotidyl transferase, ribonuclease H-like protein
[Arabidopsis thaliana]
gi|332197465|gb|AEE35586.1| polynucleotidyl transferase, ribonuclease H-like protein
[Arabidopsis thaliana]
Length = 495
Score = 197 bits (500), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 134/331 (40%), Positives = 186/331 (56%), Gaps = 53/331 (16%)
Query: 6 DRSEIVFFDVETTFPIRH-----IWEFGAILVCPRKLEELDKYTTLVRPADPSLVSNLCA 60
+RSEI FFD+ET P + I EFGAILVCPR+LEEL Y+TLVRP D SL+S L
Sbjct: 9 ERSEIAFFDLETAVPTKSGEPFAILEFGAILVCPRRLEELYSYSTLVRPTDLSLISTLTK 68
Query: 61 RRNDITPEDVFSAPTFADIADTVFDILQA---------------------------PKPK 93
RR+ IT + V SA TF++IAD V+DIL P+PK
Sbjct: 69 RRSGITRDGVLSAHTFSEIADKVYDILHGRIWAGHNIIRFDCVRIREAFAEIGLSPPEPK 128
Query: 94 GTIDSLNLLTERFGRRAGDMKMASLATYFGLGQQTHRSLDDVLMNLEVLKYCATVLLLES 153
TIDSL+LL+++FG+RAGDMKMASLATYFGLG Q HRSLDDV MNLE ES
Sbjct: 129 ATIDSLSLLSQKFGKRAGDMKMASLATYFGLGDQAHRSLDDVRMNLE-----------ES 177
Query: 154 SLPDIFTGNGCVSQNATARSRINVRSSPEGTSQNLSAPSSKFKFENASNVSPPDQGKEGI 213
S+PDI T S + R+R N + G ++ ++ SS K + +S+ K
Sbjct: 178 SVPDILTDMSWFSPRKSPRTRSNGKLVANGVRESSTSSSSSPKTDPSSSSVDATIVKN-- 235
Query: 214 HPIFTLVTQGTGELDSVLAVTTADQPNPFDMSQLSNQMETQSLQPDDTMEDKSAPESREM 273
HPI +L+T+ + E D+ ++ D +P D++ L ++ +LQ D E K+ R+
Sbjct: 236 HPIVSLLTECS-ESDA----SSYDIEDPIDITTLIGKLRIGTLQTDAAEEAKTV---RQQ 287
Query: 274 CSTASVSEGSSGYAGFMEPDEVSITSISAAV 304
+ + + F+ +EVS++SI A++
Sbjct: 288 DESPPSPDSDAKDESFLGVNEVSVSSIRASL 318
>gi|110289067|gb|ABG66074.1| exonuclease family protein, putative, expressed [Oryza sativa
Japonica Group]
Length = 267
Score = 196 bits (498), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 107/206 (51%), Positives = 128/206 (62%), Gaps = 33/206 (16%)
Query: 9 EIVFFDVETTFPIRH-----IWEFGAILVCPRKLEELDKYTTLVRPADPSLVSNLCARRN 63
EI FFDVET+ P R + EFGAILVCPR+L + Y TLVRP D +VS R N
Sbjct: 29 EIAFFDVETSVPQRAGQGYALLEFGAILVCPRRLVVVGSYATLVRPGDLGVVSAASVRCN 88
Query: 64 DITPEDVFSAPTFADIADTVFDILQA---------------------------PKPKGTI 96
IT + V +AP F D+AD V+ +L P+PKG I
Sbjct: 89 GITRDAVAAAPAFRDVADAVYSVLHGRVWAGHNIVRFDLARIREAFAEIGRPPPEPKGMI 148
Query: 97 DSLNLLTERFGRRAGDMKMASLATYFGLGQQTHRSLDDVLMNLEVLKYCATVLLLESSLP 156
D+L LLT++FGRRAGDMKMASLA YFGLG+Q+HRSLDDV MNLEVLKYCATVL LE+SLP
Sbjct: 149 DTLPLLTQKFGRRAGDMKMASLANYFGLGRQSHRSLDDVRMNLEVLKYCATVLFLEASLP 208
Query: 157 DIFTGNGCVSQNATARSRINVRSSPE 182
+ T V + A RS+ N +SPE
Sbjct: 209 GVLTVENLV-ERAITRSQANGAASPE 233
>gi|326496743|dbj|BAJ98398.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 485
Score = 195 bits (495), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 111/221 (50%), Positives = 134/221 (60%), Gaps = 36/221 (16%)
Query: 8 SEIVFFDVETTFPIRH-----IWEFGAILVCPRKLEELDKYTTLVRPADPSLVSNLCARR 62
+EI FFD+ET+ P R + EFGAILVCPR+L E+ Y TLVRPAD +VS R
Sbjct: 24 AEIAFFDLETSVPQRAGQGYALLEFGAILVCPRRLVEVACYATLVRPADLGVVSAASMRC 83
Query: 63 NDITPEDVFSAPTFADIADTVFDILQA---------------------------PKPKGT 95
N IT + V +AP F D+AD +D+L P+PKG
Sbjct: 84 NGITRDAVAAAPCFRDVADKAYDLLHGRVWAGHNIVRFDVPRIREAFIEIGRPPPEPKGM 143
Query: 96 IDSLNLLTERFGRRAGDMKMASLATYFGLGQQTHRSLDDVLMNLEVLKYCATVLLLESSL 155
ID+L LLT+RFGRRAGDMKMASLA YFGLG+Q HRSLDDV MNLEVLKYCATVL LE+SL
Sbjct: 144 IDTLPLLTQRFGRRAGDMKMASLANYFGLGRQKHRSLDDVRMNLEVLKYCATVLFLEASL 203
Query: 156 PDIFTGNGCVSQNATARSRINVRSSPE--GTSQNLSAPSSK 194
P++ V RS+ + +SPE N+S SSK
Sbjct: 204 PEVLIVENLV--GTITRSKTDGATSPEVKKLEANMSPDSSK 242
>gi|224083745|ref|XP_002307108.1| predicted protein [Populus trichocarpa]
gi|222856557|gb|EEE94104.1| predicted protein [Populus trichocarpa]
Length = 244
Score = 188 bits (477), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 103/200 (51%), Positives = 122/200 (61%), Gaps = 32/200 (16%)
Query: 9 EIVFFDVETTFPIR---HIW--EFGAILVCPRKLEELDKYTTLVRPADPSLVSNLCARRN 63
EIVFFD+ETT P + W EFGAI+VCPRKL ELD Y+TL+RP D S V+ R +
Sbjct: 11 EIVFFDLETTVPNKAGQRFWVLEFGAIIVCPRKLVELDSYSTLIRPEDLSAVALKSGRCD 70
Query: 64 DITPEDVFSAPTFADIADTVFDILQ---------------------------APKPKGTI 96
IT E V +AP F ++AD +F IL AP P G
Sbjct: 71 GITREAVANAPAFEEVADKIFTILNGRIWAGHNIQRFDCVRIKEAFAEIGRPAPMPVGMF 130
Query: 97 DSLNLLTERFGRRAGDMKMASLATYFGLGQQTHRSLDDVLMNLEVLKYCATVLLLESSLP 156
DSL +LTE+FGRRAG+MKMA+LATYFGLGQQ HRSL+DV MNLEVLK+CA VL +ESSLP
Sbjct: 131 DSLGVLTEKFGRRAGNMKMATLATYFGLGQQKHRSLEDVRMNLEVLKHCAAVLFVESSLP 190
Query: 157 DIFTGNGCVSQNATARSRIN 176
+ G RSR N
Sbjct: 191 SVMNGKWHNPSTMVTRSRSN 210
>gi|255547337|ref|XP_002514726.1| exonuclease, putative [Ricinus communis]
gi|223546330|gb|EEF47832.1| exonuclease, putative [Ricinus communis]
Length = 448
Score = 187 bits (475), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 106/187 (56%), Positives = 122/187 (65%), Gaps = 33/187 (17%)
Query: 7 RSEIVFFDVETTFPIR----HIWEFGAILVCPRKLEELDKYTTLVRPA-DPSLV-SNLCA 60
RSEI FFD+ETT P I EFGAILVCPR L EL Y T V+PA DPSL+ S+
Sbjct: 11 RSEIAFFDLETTLPGECEGFAILEFGAILVCPRTLVELHTYATFVQPAADPSLIFSSSFL 70
Query: 61 RRNDITPEDVFSAPTFADIADTVFDIL---------------------------QAPKPK 93
R N IT +++ SAPTF+DIADTV++IL Q P PK
Sbjct: 71 RSNGITYDNIVSAPTFSDIADTVYEILNGRLWAGHNVQKFDSVKIREAFAEIGRQPPVPK 130
Query: 94 GTIDSLNLLTERFGRRAGDMKMASLATYFGLGQQTHRSLDDVLMNLEVLKYCATVLLLES 153
G ID+ LLT +FGRRAGDMKMASLATYFGLG+QTHRSLDDV MN++VLK CATVLLL +
Sbjct: 131 GVIDTWELLTHKFGRRAGDMKMASLATYFGLGKQTHRSLDDVRMNVDVLKCCATVLLLVT 190
Query: 154 SLPDIFT 160
LP F
Sbjct: 191 ILPYAFV 197
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/70 (47%), Positives = 44/70 (62%), Gaps = 2/70 (2%)
Query: 234 TTADQPNPFDMSQLSNQMETQSLQPDDTMEDKSAPESREMCSTASVSEGSSGYAGFMEPD 293
+T QP PF L N+M SLQ D +E K ES E+ S+ +V EG SG+ GF+EPD
Sbjct: 203 STTFQPAPFSRGTLGNEMNIDSLQQDAAIEPKK--ESSEIPSSLTVPEGGSGHGGFLEPD 260
Query: 294 EVSITSISAA 303
EVS++ I A+
Sbjct: 261 EVSVSFIRAS 270
>gi|224096223|ref|XP_002310581.1| predicted protein [Populus trichocarpa]
gi|222853484|gb|EEE91031.1| predicted protein [Populus trichocarpa]
Length = 231
Score = 187 bits (474), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 103/200 (51%), Positives = 119/200 (59%), Gaps = 32/200 (16%)
Query: 9 EIVFFDVETTFPIR-----HIWEFGAILVCPRKLEELDKYTTLVRPADPSLVSNLCARRN 63
EIV FD+ETT P R + EFGAI VCPRKL ELD Y+TL+RP D S V+ R +
Sbjct: 13 EIVVFDLETTVPNRAGQRFRVLEFGAITVCPRKLVELDSYSTLIRPKDLSAVALKSGRCD 72
Query: 64 DITPEDVFSAPTFADIADTVFDILQ---------------------------APKPKGTI 96
IT V +AP F ++AD +F IL AP P G I
Sbjct: 73 GITRGAVSNAPAFEEVADKIFSILNGRIWAGHNIQRFDCVRIKEAFAEIGKPAPVPAGMI 132
Query: 97 DSLNLLTERFGRRAGDMKMASLATYFGLGQQTHRSLDDVLMNLEVLKYCATVLLLESSLP 156
DSL +LTERFGRRAG+MKMA+LA YFGLG+Q HRSLDDV MNLEVLK+CATVL LES LP
Sbjct: 133 DSLGVLTERFGRRAGNMKMATLAAYFGLGKQKHRSLDDVRMNLEVLKHCATVLFLESCLP 192
Query: 157 DIFTGNGCVSQNATARSRIN 176
+ C RSR N
Sbjct: 193 SVSNAKWCNPSTIVTRSRSN 212
>gi|297802094|ref|XP_002868931.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297314767|gb|EFH45190.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 227
Score = 184 bits (468), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 102/203 (50%), Positives = 130/203 (64%), Gaps = 32/203 (15%)
Query: 8 SEIVFFDVETTFPIR-----HIWEFGAILVCPRKLEELDKYTTLVRPADPSLVSNLCARR 62
+EIVFFD+ETT P + HI EFGAI+VCPRKLEEL+ +TTL++P D S+VS +R
Sbjct: 8 TEIVFFDLETTVPNKVGQYFHILEFGAIIVCPRKLEELESFTTLIQPKDLSVVSIRSSRS 67
Query: 63 NDITPEDVFSAPTFADIADTVFDILQ---------------------------APKPKGT 95
+ IT V +AP+F D+A+ ++ +L AP+P G
Sbjct: 68 DGITRAKVTNAPSFEDVAEKIYGLLNGRIWAGHNIRRFDCIRIKEAFAEIGKAAPEPSGI 127
Query: 96 IDSLNLLTERFGRRAGDMKMASLATYFGLGQQTHRSLDDVLMNLEVLKYCATVLLLESSL 155
IDSL LL+++FG+RAG+MKMASLA YFGLG Q HRSLDDV MNLEVLK+CATVL LES+L
Sbjct: 128 IDSLGLLSDKFGKRAGNMKMASLAAYFGLGVQKHRSLDDVRMNLEVLKHCATVLFLESTL 187
Query: 156 PDIFTGNGCVSQNATARSRINVR 178
P+ G S RSR N +
Sbjct: 188 PNQLEGKWQSSSKIMTRSRSNYQ 210
>gi|449451459|ref|XP_004143479.1| PREDICTED: DNA polymerase III PolC-type-like [Cucumis sativus]
gi|449504833|ref|XP_004162307.1| PREDICTED: DNA polymerase III PolC-type-like [Cucumis sativus]
Length = 269
Score = 184 bits (467), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 101/201 (50%), Positives = 123/201 (61%), Gaps = 32/201 (15%)
Query: 8 SEIVFFDVETTFPIR-----HIWEFGAILVCPRKLEELDKYTTLVRPADPSLVSNLCARR 62
+EIVFFD+ETT P R + EFGAI+VCP KL EL+ +TTL+RP D S V+ +R
Sbjct: 16 AEIVFFDLETTVPKRVGQRFRVLEFGAIVVCPMKLVELESFTTLIRPTDLSAVALRSSRP 75
Query: 63 NDITPEDVFSAPTFADIADTVFDILQ---------------------------APKPKGT 95
+ IT V +AP F ++AD +F IL AP P G
Sbjct: 76 DGITRAAVATAPLFEEVADKIFSILNGRIWAGHNIRRFDCVRIKEAFAEIGRPAPIPVGM 135
Query: 96 IDSLNLLTERFGRRAGDMKMASLATYFGLGQQTHRSLDDVLMNLEVLKYCATVLLLESSL 155
+DSL +LT +FG+RAG+MKMASLA+YF LGQQ HRSLDDV MNLEVLK+CATVL LES+L
Sbjct: 136 VDSLGVLTNKFGKRAGNMKMASLASYFQLGQQKHRSLDDVRMNLEVLKHCATVLFLESTL 195
Query: 156 PDIFTGNGCVSQNATARSRIN 176
P I S T RSR N
Sbjct: 196 PSILQEKWKTSSTKTTRSRAN 216
>gi|240256240|ref|NP_195691.4| exonuclease/ nucleic acid binding protein [Arabidopsis thaliana]
gi|332661722|gb|AEE87122.1| exonuclease/ nucleic acid binding protein [Arabidopsis thaliana]
Length = 255
Score = 183 bits (464), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 108/245 (44%), Positives = 142/245 (57%), Gaps = 42/245 (17%)
Query: 8 SEIVFFDVETTFPIR-----HIWEFGAILVCPRKLEELDKYTTLVRPADPSLVSNLCARR 62
+EIVFFD+ET P + HI EFGAI+VCP+KLEEL+ +TTL++P D S+VS +R
Sbjct: 8 NEIVFFDLETNVPNKAGQHFHILEFGAIIVCPKKLEELESFTTLIQPKDLSVVSIRSSRS 67
Query: 63 NDITPEDVFSAPTFADIADTVFDILQ---------------------------APKPKGT 95
+ IT V +AP+F D+A+ + +L AP+P G
Sbjct: 68 DGITRAKVTNAPSFEDVAEKIHGLLNGRIWAGHNIRRFDCVRIKEAFAEIGKAAPEPSGI 127
Query: 96 IDSLNLLTERFGRRAGDMKMASLATYFGLGQQTHRSLDDVLMNLEVLKYCATVLLLESSL 155
IDSL LL+++FG+RAG+MKMASLA YFGLG Q HRSLDDV MNLEVLK+CATVL LES+L
Sbjct: 128 IDSLGLLSDKFGKRAGNMKMASLAAYFGLGVQKHRSLDDVRMNLEVLKHCATVLFLESTL 187
Query: 156 PDIFTGNGCVSQNATARSRINVRSSPEGTSQNLSAPSSKFKFE----NASNVSPPDQGKE 211
P+ G S RSR N + + + P SK E N N+ QG +
Sbjct: 188 PNHLEGKWHTSSKIMTRSRRNYQIAQR------AMPYSKGSLEKMTQNVKNLLSKAQGNQ 241
Query: 212 GIHPI 216
+ +
Sbjct: 242 TLQSL 246
>gi|356528495|ref|XP_003532838.1| PREDICTED: uncharacterized protein LOC100791906 [Glycine max]
Length = 276
Score = 183 bits (464), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 108/221 (48%), Positives = 136/221 (61%), Gaps = 32/221 (14%)
Query: 5 QDRSEIVFFDVETTFPIR---HIW--EFGAILVCPRKLEELDKYTTLVRPADPSLVSNLC 59
Q EIVFFD+ETT P + W EFGAI+V P KL E++ YTTL+RP D S+VS
Sbjct: 10 QQAPEIVFFDLETTVPKKGGERFWVLEFGAIVVTPHKLTEIESYTTLIRPKDLSVVSVKS 69
Query: 60 ARRNDITPEDVFSAPTFADIADTVFDILQ---------------------------APKP 92
+R + IT + V +AP+F D+AD +F IL AP P
Sbjct: 70 SRSDGITRKAVENAPSFEDVADRIFSILNGRVWAGHNIQRFDCVRIKEAFDDINRPAPVP 129
Query: 93 KGTIDSLNLLTERFGRRAGDMKMASLATYFGLGQQTHRSLDDVLMNLEVLKYCATVLLLE 152
G IDSL +LTE+FGRRAG+MKMA+LA+YFGLGQQ HRSLDDV MNLEVLK+CATVL LE
Sbjct: 130 VGIIDSLGVLTEKFGRRAGNMKMATLASYFGLGQQKHRSLDDVRMNLEVLKHCATVLFLE 189
Query: 153 SSLPDIFTGNGCVSQNATARSRINVRSSPEGTSQNLSAPSS 193
SSLP++ S + RSR N +S + + S P++
Sbjct: 190 SSLPNMLHSKSHGSPSVMTRSRSNGKSPCKEETSRKSPPAT 230
>gi|356511111|ref|XP_003524273.1| PREDICTED: uncharacterized protein LOC100805245 [Glycine max]
Length = 276
Score = 183 bits (464), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 109/221 (49%), Positives = 135/221 (61%), Gaps = 32/221 (14%)
Query: 5 QDRSEIVFFDVETTFPIR---HIW--EFGAILVCPRKLEELDKYTTLVRPADPSLVSNLC 59
Q EIVFFD+ETT P R W EFGAI+V P KL E++ YTTL+RP D S+VS
Sbjct: 10 QQALEIVFFDLETTVPKRGGERFWVLEFGAIVVTPHKLTEIESYTTLIRPKDLSVVSVKS 69
Query: 60 ARRNDITPEDVFSAPTFADIADTVFDILQ---------------------------APKP 92
+R + IT + V +AP+F D+AD +F IL AP P
Sbjct: 70 SRSDGITRKAVENAPSFEDVADRIFSILNGRVWAGHNIQRFDCVRIKEAFNDINRSAPVP 129
Query: 93 KGTIDSLNLLTERFGRRAGDMKMASLATYFGLGQQTHRSLDDVLMNLEVLKYCATVLLLE 152
G IDSL +LTE+FGRRAG+MKMA+LA+YFGLGQQ HRSLDDV MNLEVLK+CATVL LE
Sbjct: 130 VGIIDSLGVLTEKFGRRAGNMKMATLASYFGLGQQKHRSLDDVRMNLEVLKHCATVLFLE 189
Query: 153 SSLPDIFTGNGCVSQNATARSRINVRSSPEGTSQNLSAPSS 193
SSLP+ S + RSR + +S + + S P+S
Sbjct: 190 SSLPNTLHSKWYGSSSVMTRSRSDGKSPCKEETSRKSPPTS 230
>gi|413942456|gb|AFW75105.1| hypothetical protein ZEAMMB73_060834 [Zea mays]
Length = 308
Score = 180 bits (457), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 102/190 (53%), Positives = 115/190 (60%), Gaps = 35/190 (18%)
Query: 4 TQDRSEIVFFDVETTFPIR--HIW--EFGAILVCPRKLEELDKYTTLVRPADPSLVSNLC 59
T R EIVF DVETT P W EFGAILVCPRKL E+ Y TL+RP D S VS
Sbjct: 3 TTSRDEIVFLDVETTAPTSAGRWWLLEFGAILVCPRKLVEVGSYDTLIRPGDLSAVS--- 59
Query: 60 ARRNDITPEDVFSAPTFADIADTVFDILQ---------------------------APKP 92
RR E + SAP F D+AD +F IL AP+P
Sbjct: 60 -RRFTDGVEAIASAPPFKDVADKIFGILDGRVWAGHNIQRFDCPRIREAFADIGRPAPEP 118
Query: 93 KGTIDSLNLLTERFGRRAGDMKMASLATYFGLGQQTHRSLDDVLMNLEVLKYCATVLLLE 152
G IDSLN+L FGRRAGD+KMA+LATYFG+G+Q HRSLDD MNLEVLK+CATVLLLE
Sbjct: 119 AGVIDSLNVLAAEFGRRAGDLKMATLATYFGIGKQKHRSLDDARMNLEVLKHCATVLLLE 178
Query: 153 SSLPDIFTGN 162
SSLP + G
Sbjct: 179 SSLPHVLCGR 188
>gi|226493850|ref|NP_001151909.1| exonuclease [Zea mays]
gi|195650883|gb|ACG44909.1| exonuclease [Zea mays]
gi|413950294|gb|AFW82943.1| exonuclease [Zea mays]
Length = 302
Score = 180 bits (457), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 105/200 (52%), Positives = 121/200 (60%), Gaps = 43/200 (21%)
Query: 7 RSEIVFFDVETTFPIR----HIW--EFGAILVCPRKLEELDKYTTLVRPADPSLVSNLCA 60
R EIVFFDVETT P W EFGAILVCPRKL E+ Y TL+RP D S VS
Sbjct: 4 RDEIVFFDVETTAPSAAGPGRWWLLEFGAILVCPRKLVEVGSYDTLIRPGDLSAVS---- 59
Query: 61 RR--NDITPEDVFSAPTFADIADTVFDILQ---------------------------APK 91
RR +D+ + SAP F D+AD +FDIL AP+
Sbjct: 60 RRFTDDVEAAIMASAPPFKDVADKIFDILDGRVWAGHNIQRFDCPRIREAFADIGRPAPE 119
Query: 92 PKGTIDSLNLLTERFGRRAGDMKMASLATYFGLGQQTHRSLDDVLMNLEVLKYCATVLLL 151
P G IDSLN+L FGRRAGD+KMA+LATYFG+G+Q HR LDD MNLEVLK+CATVLLL
Sbjct: 120 PVGVIDSLNVLAAHFGRRAGDLKMATLATYFGIGKQKHRGLDDARMNLEVLKHCATVLLL 179
Query: 152 ESSLPDIFTGNGCVSQNATA 171
ESSLPD+ C Q+ A
Sbjct: 180 ESSLPDVL----CAQQSRRA 195
>gi|3080450|emb|CAA18767.1| hypothetical protein [Arabidopsis thaliana]
gi|7270965|emb|CAB80644.1| hypothetical protein [Arabidopsis thaliana]
Length = 236
Score = 180 bits (456), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 100/203 (49%), Positives = 128/203 (63%), Gaps = 32/203 (15%)
Query: 8 SEIVFFDVETTFPIR-----HIWEFGAILVCPRKLEELDKYTTLVRPADPSLVSNLCARR 62
+EIVFFD+ET P + HI EFGAI+VCP+KLEEL+ +TTL++P D S+VS +R
Sbjct: 8 NEIVFFDLETNVPNKAGQHFHILEFGAIIVCPKKLEELESFTTLIQPKDLSVVSIRSSRS 67
Query: 63 NDITPEDVFSAPTFADIADTVFDILQ---------------------------APKPKGT 95
+ IT V +AP+F D+A+ + +L AP+P G
Sbjct: 68 DGITRAKVTNAPSFEDVAEKIHGLLNGRIWAGHNIRRFDCVRIKEAFAEIGKAAPEPSGI 127
Query: 96 IDSLNLLTERFGRRAGDMKMASLATYFGLGQQTHRSLDDVLMNLEVLKYCATVLLLESSL 155
IDSL LL+++FG+RAG+MKMASLA YFGLG Q HRSLDDV MNLEVLK+CATVL LES+L
Sbjct: 128 IDSLGLLSDKFGKRAGNMKMASLAAYFGLGVQKHRSLDDVRMNLEVLKHCATVLFLESTL 187
Query: 156 PDIFTGNGCVSQNATARSRINVR 178
P+ G S RSR N +
Sbjct: 188 PNHLEGKWHTSSKIMTRSRRNYQ 210
>gi|242086513|ref|XP_002439089.1| hypothetical protein SORBIDRAFT_09g000300 [Sorghum bicolor]
gi|241944374|gb|EES17519.1| hypothetical protein SORBIDRAFT_09g000300 [Sorghum bicolor]
Length = 319
Score = 179 bits (454), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 99/185 (53%), Positives = 117/185 (63%), Gaps = 35/185 (18%)
Query: 9 EIVFFDVETTFPI--RHIW--EFGAILVCPRKLEELDKYTTLVRPADPSLVSNLCARRND 64
EIVFFDVETT P W EFGAILVCPRKL E+ Y TL+RP D S+ + R +D
Sbjct: 10 EIVFFDVETTAPTPAGRWWLLEFGAILVCPRKLVEVASYDTLIRPGDLSVA--VTKRFSD 67
Query: 65 ITPEDVFSAPTFADIADTVFDILQ---------------------------APKPKGTID 97
+ E + SAP F D+AD +F+IL AP+P G ID
Sbjct: 68 V--EAIASAPPFKDVADKIFEILDGRVWAGHNIQRFDCPRIREAFADIGRPAPEPAGVID 125
Query: 98 SLNLLTERFGRRAGDMKMASLATYFGLGQQTHRSLDDVLMNLEVLKYCATVLLLESSLPD 157
SLN+L FGRRAGD+KMA+LATYFG+G+Q HRSLDD MNLEVLK+CATVLLLESSLP
Sbjct: 126 SLNVLAADFGRRAGDLKMATLATYFGIGKQKHRSLDDARMNLEVLKHCATVLLLESSLPH 185
Query: 158 IFTGN 162
+ G
Sbjct: 186 VLGGT 190
>gi|357519533|ref|XP_003630055.1| DNA polymerase III polC-type [Medicago truncatula]
gi|355524077|gb|AET04531.1| DNA polymerase III polC-type [Medicago truncatula]
Length = 281
Score = 176 bits (446), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 103/220 (46%), Positives = 129/220 (58%), Gaps = 35/220 (15%)
Query: 9 EIVFFDVETTFPIR---HIW--EFGAILVCPRKLEELDKYTTLVRPADPSLVSNLCARRN 63
EIVFFD+ET P + W EFGAI+V KL E++ YTTL+RP D S+ +R +
Sbjct: 16 EIVFFDLETNVPKKIGQRFWVLEFGAIVVSAHKLSEIESYTTLIRPEDLSVAPMKSSRSD 75
Query: 64 DITPEDVFSAPTFADIADTVFDILQ---------------------------APKPKGTI 96
IT E V +AP F D+A+ +F IL AP P G I
Sbjct: 76 GITREAVKNAPCFEDVAEKIFSILNGRVWAGHNIQRFDCVRIKEAFDGINRPAPVPVGII 135
Query: 97 DSLNLLTERFGRRAGDMKMASLATYFGLGQQTHRSLDDVLMNLEVLKYCATVLLLESSLP 156
DSL +LTE+FGRRAG+MKMA+LA+YFGLGQQ HRSLDDV MNLEV+K+CATVL LES+LP
Sbjct: 136 DSLGVLTEKFGRRAGNMKMATLASYFGLGQQKHRSLDDVRMNLEVVKHCATVLFLESTLP 195
Query: 157 D---IFTGNGCVSQNATARSRINVRSSPEGTSQNLSAPSS 193
+ I S + RSR N +S + S P+S
Sbjct: 196 NTLHIDKSKWYGSSSIMTRSRTNGKSPCREETSRKSPPAS 235
>gi|222629868|gb|EEE62000.1| hypothetical protein OsJ_16781 [Oryza sativa Japonica Group]
Length = 252
Score = 169 bits (428), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 100/248 (40%), Positives = 136/248 (54%), Gaps = 37/248 (14%)
Query: 7 RSEIVFFDVETTFPI-----RHIWEFGAILVCPRKLEELDKYTTLVRPADPSLVSNLCAR 61
R E+VFFDVETT R + EFGAI+VCPR+L E+D Y T++RP D S VS A
Sbjct: 3 RPEMVFFDVETTAASADEGQRSVLEFGAIVVCPRRLVEVDSYHTVIRPGDMSAVSKRFAA 62
Query: 62 RNDITPEDVFSAPTFADIADTVFDIL---------------------------QAPKPKG 94
D+ DV SAP+F +A+ +F +L AP+P
Sbjct: 63 MVDV---DVASAPSFDQVAERIFGVLDGRVWAGHNIQRFDCHRIREAFAAIGRAAPEPVA 119
Query: 95 TIDSLNLLTERFGRRAGDMKMASLATYFGLGQQTHRSLDDVLMNLEVLKYCATVLLLESS 154
+DSLN+L FGRRAGD+KMA+LA+YFG+G+Q+HRSLDD MNLEVLK CAT+LLLES+
Sbjct: 120 IVDSLNVLAHDFGRRAGDLKMATLASYFGIGKQSHRSLDDARMNLEVLKRCATLLLLEST 179
Query: 155 LPDIFTGNGCVSQNATARSRINVRSSPEGTSQNLSAPSSKFKFENASNVSPPDQGKEGIH 214
LP + + + R R N + P +S PS + + + + P
Sbjct: 180 LPPGMLHSS--AAGSITRKRSNHQEEPSSSSLVNVTPSKRKQRQGSGGKIRPKAATTTPK 237
Query: 215 PIFTLVTQ 222
P F ++ +
Sbjct: 238 PCFHMILR 245
>gi|242035185|ref|XP_002464987.1| hypothetical protein SORBIDRAFT_01g029940 [Sorghum bicolor]
gi|241918841|gb|EER91985.1| hypothetical protein SORBIDRAFT_01g029940 [Sorghum bicolor]
Length = 435
Score = 168 bits (425), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 91/181 (50%), Positives = 114/181 (62%), Gaps = 28/181 (15%)
Query: 7 RSEIVFFDVETTFPIRHIWEFGAILVCPRKLEELDKYTTLVRPADP-SLVSNLCARRNDI 65
R EIVF DVET+ P R + EFGA++VC R+L ++ Y TLVRPADP + V + AR + I
Sbjct: 17 REEIVFLDVETSTPPRVLLEFGAVVVCSRRLVDVSSYATLVRPADPDAAVPDPTARCSGI 76
Query: 66 TPEDVFSAPTFADIADTVFDILQA---------------------------PKPKGTIDS 98
T + V AP F D+AD V+D+L P+PKG +D+
Sbjct: 77 TRDAVADAPPFRDVADKVYDVLHGRVWAGHNIVKFDSVIIRDAFAEIGRPPPEPKGMVDT 136
Query: 99 LNLLTERFGRRAGDMKMASLATYFGLGQQTHRSLDDVLMNLEVLKYCATVLLLESSLPDI 158
L LLT+ FG RAGDMK+ASLA YFGLG+Q HRSLDDV MN++VLK CATVL LE SL +
Sbjct: 137 LPLLTQWFGPRAGDMKLASLANYFGLGKQRHRSLDDVKMNIDVLKNCATVLFLEESLRGV 196
Query: 159 F 159
Sbjct: 197 L 197
>gi|357130185|ref|XP_003566731.1| PREDICTED: uncharacterized protein LOC100832440 [Brachypodium
distachyon]
Length = 265
Score = 162 bits (409), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 88/203 (43%), Positives = 115/203 (56%), Gaps = 39/203 (19%)
Query: 9 EIVFFDVETTFP---IRHIW---EFGAILVCPRKLEELDKYTTLVRPADPSLVSNLCARR 62
E+VFFDVET H W EFGAILVCPR+L EL Y+TL+RP DP + + R
Sbjct: 9 EMVFFDVETAAAPSSCSHQWWILEFGAILVCPRRLLELSSYSTLIRPDDPQ--AAISKRF 66
Query: 63 NDITP----EDVFSAPTFADIADTVFDILQA---------------------------PK 91
D P +D SAPTF+++A + +L P+
Sbjct: 67 LDSIPSDSGQDHSSAPTFSEVAGEIHALLHGRVWAGHNIRRFDVPRLRAAFAAAGLPPPE 126
Query: 92 PKGTIDSLNLLTERFGRRAGDMKMASLATYFGLGQQTHRSLDDVLMNLEVLKYCATVLLL 151
P +DSL+LL FGRRAGD+KMA+LA YFG+G+Q HR LDD MNLEV+K+CA VLLL
Sbjct: 127 PAAVVDSLDLLASEFGRRAGDLKMATLAAYFGIGKQRHRGLDDARMNLEVIKHCAAVLLL 186
Query: 152 ESSLPDIFTGNGCVSQNATARSR 174
ES+LP + G + + + + R
Sbjct: 187 ESTLPGLLAAAGVIHKGNSCKKR 209
>gi|195657335|gb|ACG48135.1| hypothetical protein [Zea mays]
Length = 458
Score = 161 bits (408), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 87/177 (49%), Positives = 108/177 (61%), Gaps = 27/177 (15%)
Query: 6 DRSEIVFFDVETTFPIRHIWEFGAILVCPRKLEELDKYTTLVRPADPSLVSNLCARRNDI 65
DR EIVF DVET+ P + EFGA++VC R+L E+ + TLVRPA+ + + AR N I
Sbjct: 11 DREEIVFLDVETSTPPCVLLEFGAVVVCSRRLVEVSSFATLVRPANLDALPDPTARSNGI 70
Query: 66 TPEDVFSAPTFADIADTVFDILQA---------------------------PKPKGTIDS 98
T + AP F D+AD V+D+L P+PK ID+
Sbjct: 71 TRGTLADAPPFGDVADMVYDVLHGRVWAGHNIVHFDSMIIMDAFAEIGRPPPQPKAMIDT 130
Query: 99 LNLLTERFGRRAGDMKMASLATYFGLGQQTHRSLDDVLMNLEVLKYCATVLLLESSL 155
L LLT+ FG RAGDMK+ASLA YFGLG+Q HRSLDDV MN++V K CATVL LE SL
Sbjct: 131 LPLLTQCFGPRAGDMKLASLANYFGLGKQRHRSLDDVKMNIDVFKNCATVLFLEESL 187
>gi|224029725|gb|ACN33938.1| unknown [Zea mays]
gi|414867639|tpg|DAA46196.1| TPA: hypothetical protein ZEAMMB73_898479 [Zea mays]
Length = 457
Score = 159 bits (401), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 86/177 (48%), Positives = 108/177 (61%), Gaps = 27/177 (15%)
Query: 6 DRSEIVFFDVETTFPIRHIWEFGAILVCPRKLEELDKYTTLVRPADPSLVSNLCARRNDI 65
DR EIVF DVET+ P + EFGA++VC R+L ++ + TLVRPA+ + + AR N I
Sbjct: 11 DREEIVFLDVETSTPPCVLLEFGAVVVCSRRLVDVSSFATLVRPANLDALPDPTARSNGI 70
Query: 66 TPEDVFSAPTFADIADTVFDILQA---------------------------PKPKGTIDS 98
T + AP F D+AD V+D+L P+PK ID+
Sbjct: 71 TRGTLADAPPFRDVADMVYDVLHGRVWAGHNIVHFDSMIIMDAFAEIGRPPPQPKAMIDT 130
Query: 99 LNLLTERFGRRAGDMKMASLATYFGLGQQTHRSLDDVLMNLEVLKYCATVLLLESSL 155
L LLT+ FG RAGDMK+ASLA YFGLG+Q HRSLDDV MN++V K CATVL LE SL
Sbjct: 131 LPLLTQCFGPRAGDMKLASLANYFGLGKQRHRSLDDVKMNIDVFKNCATVLFLEESL 187
>gi|300681549|emb|CBH32646.1| exonuclease, putative [Triticum aestivum]
Length = 283
Score = 152 bits (384), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 92/191 (48%), Positives = 115/191 (60%), Gaps = 42/191 (21%)
Query: 4 TQDRSEIVFFDVET------TFPIRHIW--EFGAILVCPRKLEELDKYTTLVRPADPSLV 55
T+ + E+VFFDVET T W EFGAILVCPR+L EL Y+TL+RP DP+ V
Sbjct: 3 TEAKEEMVFFDVETAAAPSPTDASTQWWLLEFGAILVCPRRLVELSSYSTLIRPGDPAAV 62
Query: 56 SNLCARRNDITPE---DVFSAPTFADIADTVFDILQA----------------------- 89
S RR P +AP FAD+AD +F +L
Sbjct: 63 S----RRFSGDPALSAAFRAAPPFADVADDIFALLHGRVWAGHNIRRFDCHRVRDAFAAA 118
Query: 90 ----PKPKGTIDSLNLLTERFGRRAGDMKMASLATYFGLGQQTHRSLDDVLMNLEVLKYC 145
P+P +DSL++L + FGRRAGD+KMA+LA YFG+G+QTHRSLDDV MNLEVLK+C
Sbjct: 119 GRAAPEPVAVVDSLSVLAQGFGRRAGDLKMATLAAYFGIGKQTHRSLDDVRMNLEVLKHC 178
Query: 146 ATVLLLESSLP 156
A VL+LES+LP
Sbjct: 179 AAVLMLESNLP 189
>gi|383100770|emb|CCG48001.1| exonuclease, putative [Triticum aestivum]
Length = 282
Score = 150 bits (379), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 97/214 (45%), Positives = 121/214 (56%), Gaps = 45/214 (21%)
Query: 1 MGPTQDRSEIVFFDVETTFP------IRHIW--EFGAILVCPRKLEELDKYTTLVRPADP 52
M + E+VFFDVET W EFGAILVCPR+L EL Y+TL+RP DP
Sbjct: 1 MATEAAKEEMVFFDVETAAAPSPSDSSGQWWLLEFGAILVCPRRLVELASYSTLIRPGDP 60
Query: 53 SLVSNLCARRNDITPE---DVFSAPTFADIADTVFDILQA-------------------- 89
S VS RR P +AP FAD+AD +F +L
Sbjct: 61 SAVS----RRFSGDPSLSAAFRAAPPFADVADDIFALLDGRVWAGHNIRRFDCHRVREAF 116
Query: 90 -------PKPKGTIDSLNLLTERFGRRAGDMKMASLATYFGLGQQTHRSLDDVLMNLEVL 142
P+P +DSL++L FGRRAGD+KMA+LA YFG+G+QTHRSLDDV MNLEVL
Sbjct: 117 AAAGRAAPEPVAVVDSLSVLARGFGRRAGDLKMATLAAYFGIGKQTHRSLDDVRMNLEVL 176
Query: 143 KYCATVLLLESSLP-DIFTG--NGCVSQNATARS 173
K+CA VL+LES+LP + G +G V++ A S
Sbjct: 177 KHCAAVLMLESNLPAGVLPGADDGAVTRRRAATS 210
>gi|15451562|gb|AAK98686.1|AC021893_20 Putative exonuclease [Oryza sativa Japonica Group]
gi|31432000|gb|AAP53699.1| exonuclease family protein, expressed [Oryza sativa Japonica Group]
gi|222612804|gb|EEE50936.1| hypothetical protein OsJ_31475 [Oryza sativa Japonica Group]
Length = 436
Score = 148 bits (374), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 82/190 (43%), Positives = 110/190 (57%), Gaps = 33/190 (17%)
Query: 4 TQDRSEIVFFDVETTFPI-----RHIWEFGAILVCPRKLEELDKYTTLVRPADPSLVSNL 58
++ EI FFDVET+ P R + EFG+I +CPR +E + + TLVRP+D +V+
Sbjct: 17 VEEEPEIAFFDVETSMPWGPRERRTLLEFGSIFLCPRLVEVAEPFVTLVRPSDLGVVTEA 76
Query: 59 CARRNDITPEDVFSAPTFADIADTVFDILQA---------------------------PK 91
R+ IT + AP F D+AD + ++L P+
Sbjct: 77 LERKG-ITRGALEDAPPFCDVADNIHNVLHGRIWAGHNIISFDSEIIREAFAEIGRSPPE 135
Query: 92 PKGTIDSLNLLTERFGRRAGDMKMASLATYFGLGQQTHRSLDDVLMNLEVLKYCATVLLL 151
PKG ID+L LLT+ FGRRAG+MKMA+LA YF LG Q HRSL DV MNL+VLK C+TVL L
Sbjct: 136 PKGMIDTLPLLTQTFGRRAGNMKMANLADYFNLGPQIHRSLYDVRMNLDVLKCCSTVLFL 195
Query: 152 ESSLPDIFTG 161
E + P + +G
Sbjct: 196 EDNFPKLLSG 205
>gi|218184498|gb|EEC66925.1| hypothetical protein OsI_33530 [Oryza sativa Indica Group]
Length = 422
Score = 148 bits (373), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 83/191 (43%), Positives = 113/191 (59%), Gaps = 34/191 (17%)
Query: 4 TQDRSEIVFFDVETTFPI-----RHIWEFGAILVCPRKLEEL-DKYTTLVRPADPSLVSN 57
++ EI FFDVET+ P R + EFG+I +CPR+L E+ + + TLVRP+D +V+
Sbjct: 17 VEEEPEIAFFDVETSMPWGPRERRTLLEFGSIFLCPRQLVEVAEPFITLVRPSDLGVVTE 76
Query: 58 LCARRNDITPEDVFSAPTFADIADTVFDILQA---------------------------P 90
R+ IT + AP F D+AD + ++L P
Sbjct: 77 ALERKG-ITRGALEDAPPFCDVADNIHNVLHGRIWAGHNIISFDSEIIREAFAEIGRSPP 135
Query: 91 KPKGTIDSLNLLTERFGRRAGDMKMASLATYFGLGQQTHRSLDDVLMNLEVLKYCATVLL 150
+PKG ID+L LLT+ FGRRAG+MKMA+LA YF LG Q HRSL DV MNL+VLK C+TVL
Sbjct: 136 EPKGMIDTLPLLTQTFGRRAGNMKMANLADYFNLGPQIHRSLYDVRMNLDVLKCCSTVLF 195
Query: 151 LESSLPDIFTG 161
LE + P++ +G
Sbjct: 196 LEDNFPELLSG 206
>gi|255576154|ref|XP_002528971.1| exonuclease, putative [Ricinus communis]
gi|223531561|gb|EEF33390.1| exonuclease, putative [Ricinus communis]
Length = 194
Score = 144 bits (363), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 77/160 (48%), Positives = 96/160 (60%), Gaps = 32/160 (20%)
Query: 8 SEIVFFDVETTFPIR---HIW--EFGAILVCPRKLEELDKYTTLVRPADPSLVSNLCARR 62
SEIVFFD+ETT P R W EFGAI+VCPRKL E++ YTTL+RP D S+V+ R
Sbjct: 13 SEIVFFDLETTVPNRAGGRFWVLEFGAIIVCPRKLVEIESYTTLIRPKDLSVVALRSGRS 72
Query: 63 NDITPEDVFSAPTFADIADTVFDILQA---------------------------PKPKGT 95
IT V AP F +++D ++ IL P P G
Sbjct: 73 GGITRNAVADAPAFEEVSDKIYSILNGRIWAGHNIRRFDCIRIKEAFAELGKDPPVPVGM 132
Query: 96 IDSLNLLTERFGRRAGDMKMASLATYFGLGQQTHRSLDDV 135
IDSL +L+++FGRRAG++KMA+LA YFGLGQQ HRSLDDV
Sbjct: 133 IDSLGVLSQKFGRRAGNLKMATLADYFGLGQQKHRSLDDV 172
>gi|302823961|ref|XP_002993628.1| hypothetical protein SELMODRAFT_48207 [Selaginella moellendorffii]
gi|300138556|gb|EFJ05320.1| hypothetical protein SELMODRAFT_48207 [Selaginella moellendorffii]
Length = 175
Score = 142 bits (359), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 81/175 (46%), Positives = 102/175 (58%), Gaps = 32/175 (18%)
Query: 9 EIVFFDVETTFP-----IRHIWEFGAILVCPRKLEELDKYTTLVRPADPSLVSNLCARRN 63
EIVF+DVETT P I EFGA++V R LEELD +TTLVRP+ +LVS N
Sbjct: 1 EIVFYDVETTVPEVKGQGYEILEFGAVVVSARGLEELDSFTTLVRPSSLALVSPRSVSCN 60
Query: 64 DITPEDVFSAPTFADIADTVFDILQA---------------------------PKPKGTI 96
I + + AP+F +IAD V +L P+ G I
Sbjct: 61 GIVQDSLVGAPSFLEIADRVHALLHGRVWAGHNILRFDNLRIKEAFASIGRAGPEAAGHI 120
Query: 97 DSLNLLTERFGRRAGDMKMASLATYFGLGQQTHRSLDDVLMNLEVLKYCATVLLL 151
D+ LL + FG+RAG++KMA+LA+YFGLG+Q HRSL DV MN+EVLK CATVL L
Sbjct: 121 DTFPLLRKSFGQRAGNLKMATLASYFGLGKQEHRSLADVRMNIEVLKLCATVLFL 175
>gi|302782960|ref|XP_002973253.1| hypothetical protein SELMODRAFT_58287 [Selaginella moellendorffii]
gi|300159006|gb|EFJ25627.1| hypothetical protein SELMODRAFT_58287 [Selaginella moellendorffii]
Length = 175
Score = 139 bits (350), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 80/175 (45%), Positives = 101/175 (57%), Gaps = 32/175 (18%)
Query: 9 EIVFFDVETTFP-----IRHIWEFGAILVCPRKLEELDKYTTLVRPADPSLVSNLCARRN 63
EIVF+DVETT P I EFGA++V R L ELD +TTLVRP+ +LVS N
Sbjct: 1 EIVFYDVETTVPEVKGQGYDILEFGAVVVSARGLGELDSFTTLVRPSSLALVSPRSVSCN 60
Query: 64 DITPEDVFSAPTFADIADTVFDILQA---------------------------PKPKGTI 96
I + + AP+F +IAD V +L P+ G I
Sbjct: 61 GIVQDSLVGAPSFLEIADRVHALLHGRVWAGHNILRFDNLRIKEAFASIGRAGPEAAGHI 120
Query: 97 DSLNLLTERFGRRAGDMKMASLATYFGLGQQTHRSLDDVLMNLEVLKYCATVLLL 151
D+ LL + FG+RAG++KMA+LA+YFGLG+Q HRSL DV MN+EVLK CATVL L
Sbjct: 121 DTFPLLRKSFGQRAGNLKMATLASYFGLGKQEHRSLADVRMNIEVLKLCATVLFL 175
>gi|449533437|ref|XP_004173682.1| PREDICTED: uncharacterized protein LOC101223607, partial [Cucumis
sativus]
Length = 146
Score = 136 bits (342), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 82/146 (56%), Positives = 95/146 (65%), Gaps = 32/146 (21%)
Query: 1 MGPTQDRSEIVFFDVETTFPIRH-----IWEFGAILVCPRKLEELDKYTTLVRPADPSLV 55
MGPT+DRSEI FFDVETT P R I EFGAILVCP+KL EL+ Y+TLV+P+D SL+
Sbjct: 1 MGPTEDRSEIAFFDVETTVPTRQGQKFSILEFGAILVCPKKLVELESYSTLVKPSDLSLI 60
Query: 56 SNLCARRNDITPEDVFSAPTFADIADTVFDILQ--------------------------- 88
S+L R N IT + V S+PTFA IAD V+DIL
Sbjct: 61 SSLSVRCNGITRDAVISSPTFAQIADRVYDILHGRIWAGHNILRFDCARIREAFAEIGVP 120
Query: 89 APKPKGTIDSLNLLTERFGRRAGDMK 114
AP+PKGTIDSL LLT+RFGRRAGDMK
Sbjct: 121 APEPKGTIDSLALLTQRFGRRAGDMK 146
>gi|449477209|ref|XP_004154961.1| PREDICTED: uncharacterized LOC101223607 [Cucumis sativus]
Length = 359
Score = 124 bits (311), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 86/192 (44%), Positives = 118/192 (61%), Gaps = 11/192 (5%)
Query: 115 MASLATYFGLGQQTHRSLDDVLMNLEVLKYCATVLLLESSLPDIFTGNGCVSQNATARSR 174
MA+LA+YFG+GQQTHRSLDDV MNLEVLKYCATVL LESSLP++F N VS NA R R
Sbjct: 1 MATLASYFGIGQQTHRSLDDVRMNLEVLKYCATVLFLESSLPEVFPENSWVSPNAVTRRR 60
Query: 175 INVRSSPEGTSQNLSAPSSKFKFENASNVSPPDQGKEGIHPIFTLVTQGTGELDSVLAVT 234
S +S N S SS N ++ P QG+ HPI +LVT + + S+LA
Sbjct: 61 AAKSSPQGNSSNNNSHASSSNIGGNPISL-PVQQGE--THPILSLVTICSEDRASILAEP 117
Query: 235 TADQPNPFDMSQLSNQMETQSLQPDDTMEDKSAPESREMCSTASVSEGSSG---YAGFME 291
+A + + F+M S+Q+ +L+ D ME+ + + + AS SE +S F+E
Sbjct: 118 SATESDSFNMHTTSDQITGATLETDINMEEHAT-----VSTEASPSEDTSTSLCTTKFLE 172
Query: 292 PDEVSITSISAA 303
PD+VS++ I+A+
Sbjct: 173 PDQVSVSFITAS 184
>gi|302769470|ref|XP_002968154.1| hypothetical protein SELMODRAFT_89701 [Selaginella moellendorffii]
gi|300163798|gb|EFJ30408.1| hypothetical protein SELMODRAFT_89701 [Selaginella moellendorffii]
Length = 168
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 67/171 (39%), Positives = 92/171 (53%), Gaps = 34/171 (19%)
Query: 9 EIVFFDVETTFP-----IRHIWEFGAILVCPRKLEELDKYTTLVRPA------------- 50
EIVF+D+ET+ P R I EFGA+++ + L E+D YTT VRP+
Sbjct: 2 EIVFYDLETSMPEGKEQSREILEFGAVVLSAKGLVEVDSYTTPVRPSVMNSRNAAGTSSG 61
Query: 51 ----------DPSLVSNLCARRNDITPEDVFSAPTFADIADTVFDILQAPKPKGTIDSLN 100
+ + A N ++V FA I + P+ G ID+L
Sbjct: 62 ALRLLIESMSYCTQAGRIWAGHNICEFDNVRIEEAFASIGRPM------PEAAGFIDTLP 115
Query: 101 LLTERFGRRAGDMKMASLATYFGLGQQTHRSLDDVLMNLEVLKYCATVLLL 151
LL FG+RAG++K+++LA YF LG+Q HRSL DV MN++VLK CATVLLL
Sbjct: 116 LLQRTFGQRAGNLKLSTLAAYFSLGKQEHRSLPDVRMNIKVLKRCATVLLL 166
>gi|226503946|ref|NP_001140253.1| uncharacterized protein LOC100272294 [Zea mays]
gi|194698700|gb|ACF83434.1| unknown [Zea mays]
gi|223944519|gb|ACN26343.1| unknown [Zea mays]
gi|414867636|tpg|DAA46193.1| TPA: hypothetical protein ZEAMMB73_898479 [Zea mays]
gi|414867637|tpg|DAA46194.1| TPA: hypothetical protein ZEAMMB73_898479 [Zea mays]
Length = 370
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 47/66 (71%), Positives = 54/66 (81%)
Query: 90 PKPKGTIDSLNLLTERFGRRAGDMKMASLATYFGLGQQTHRSLDDVLMNLEVLKYCATVL 149
P+PK ID+L LLT+ FG RAGDMK+ASLA YFGLG+Q HRSLDDV MN++V K CATVL
Sbjct: 35 PQPKAMIDTLPLLTQCFGPRAGDMKLASLANYFGLGKQRHRSLDDVKMNIDVFKNCATVL 94
Query: 150 LLESSL 155
LE SL
Sbjct: 95 FLEESL 100
>gi|194698552|gb|ACF83360.1| unknown [Zea mays]
gi|195655181|gb|ACG47058.1| hypothetical protein [Zea mays]
gi|414867638|tpg|DAA46195.1| TPA: hypothetical protein ZEAMMB73_898479 [Zea mays]
Length = 366
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 47/66 (71%), Positives = 54/66 (81%)
Query: 90 PKPKGTIDSLNLLTERFGRRAGDMKMASLATYFGLGQQTHRSLDDVLMNLEVLKYCATVL 149
P+PK ID+L LLT+ FG RAGDMK+ASLA YFGLG+Q HRSLDDV MN++V K CATVL
Sbjct: 31 PQPKAMIDTLPLLTQCFGPRAGDMKLASLANYFGLGKQRHRSLDDVKMNIDVFKNCATVL 90
Query: 150 LLESSL 155
LE SL
Sbjct: 91 FLEESL 96
>gi|326529009|dbj|BAK00898.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 305
Score = 90.9 bits (224), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 71/208 (34%), Positives = 105/208 (50%), Gaps = 47/208 (22%)
Query: 4 TQDRSEIVFFDVETTFPIR------HIWEFGAILVCPRKLEELDKYTTLVRPADPSLVSN 57
T + E+VFFDVE P + EF AILVCPR+L E+ Y+TL+R P N
Sbjct: 3 TTKKREMVFFDVEAAQPPSCPSGECRLVEFAAILVCPRRLVEVSSYSTLIRQDHPDADEN 62
Query: 58 LCARRNDITPEDVFSAPTFADIADTVFDILQ---------------------------AP 90
+ + +AP F D+ +F++L AP
Sbjct: 63 -----SSVLLSAASAAPAFEDVFPDIFELLDGRVWAGHGIRRSGCARVRGAFAAFGLPAP 117
Query: 91 KPKGTIDSLNLLTER--FGRRAGDMKMASLATYFGLGQQTHRS---LDDVLMNLEVLKYC 145
+P G +DSL++L + FG+ D + A+LA +FG+G + R LD ++L+VLK+C
Sbjct: 118 EPVGVVDSLDVLVAQGCFGQ---DEEAAALAEHFGVGVRRARGLRCLDGARLSLDVLKHC 174
Query: 146 ATVLLLESSL-PDIFTGNGCVSQNATAR 172
A VLL+ESSL D+ G VS+ AT++
Sbjct: 175 AGVLLIESSLRGDVPAGATRVSKPATSK 202
>gi|302773940|ref|XP_002970387.1| hypothetical protein SELMODRAFT_411374 [Selaginella moellendorffii]
gi|300161903|gb|EFJ28517.1| hypothetical protein SELMODRAFT_411374 [Selaginella moellendorffii]
Length = 319
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 41/70 (58%), Positives = 54/70 (77%)
Query: 90 PKPKGTIDSLNLLTERFGRRAGDMKMASLATYFGLGQQTHRSLDDVLMNLEVLKYCATVL 149
P+ G ID+L LL FG+RA ++K+++LA YF LG+Q HRSL DV MN++VLK CATVL
Sbjct: 2 PEAAGFIDTLPLLQRTFGQRARNLKLSTLAAYFSLGKQEHRSLPDVRMNIKVLKRCATVL 61
Query: 150 LLESSLPDIF 159
LLES+ P +F
Sbjct: 62 LLESNFPHLF 71
>gi|242052651|ref|XP_002455471.1| hypothetical protein SORBIDRAFT_03g011452 [Sorghum bicolor]
gi|241927446|gb|EES00591.1| hypothetical protein SORBIDRAFT_03g011452 [Sorghum bicolor]
Length = 142
Score = 84.7 bits (208), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 46/85 (54%), Positives = 56/85 (65%), Gaps = 6/85 (7%)
Query: 9 EIVFFDVETTFPIRH-----IWEFGAILVCPRKLEELDKYTTLVRPADP-SLVSNLCARR 62
E+ FFDVET+ P R + EFGA+LVCPR+L E+ Y TLVRPADP S VS R
Sbjct: 47 EMAFFDVETSMPQRADQGYALLEFGAVLVCPRRLVEVASYATLVRPADPVSAVSAASVRC 106
Query: 63 NDITPEDVFSAPTFADIADTVFDIL 87
N IT + V AP F D+AD V+D+L
Sbjct: 107 NGITRDAVSGAPPFRDVADAVYDLL 131
>gi|297814576|ref|XP_002875171.1| hypothetical protein ARALYDRAFT_346774 [Arabidopsis lyrata subsp.
lyrata]
gi|297321009|gb|EFH51430.1| hypothetical protein ARALYDRAFT_346774 [Arabidopsis lyrata subsp.
lyrata]
Length = 267
Score = 77.8 bits (190), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 53/181 (29%), Positives = 82/181 (45%), Gaps = 35/181 (19%)
Query: 3 PTQDRSEIVFFDVETTFPIRHIWEFGAILVCPRKLEELDKYTTLVRPADPSLVSNLCARR 62
P DR ++F D+E F + EF ++V + LE + Y T ++P+D +VS R
Sbjct: 65 PNADR--LLFLDLE--FEKEDVIEFAVLIVDSKTLEAVYNYETFIKPSD-GVVSKFRDRP 119
Query: 63 NDITPEDVFSAPTFADIADTVFDILQA------------------------------PKP 92
N IT + APTF D+ + +F +L P
Sbjct: 120 NGITKAKLQRAPTFLDVHEDIFKVLHGGIWIGHNIIRTDIPLLLKMYRRHNLPEKRIPSF 179
Query: 93 KGTIDSLNLLTERFGRRAGDMKMASLATYFGLGQQTHRSLDDVLMNLEVLKYCATVLLLE 152
+ ID+L L F + +K+ L +F L +QTHRSL+D +NL+V K C V+ +E
Sbjct: 180 RYKIDTLKWLEGNFLGKTQGLKLNELGKFFKLEEQTHRSLEDCDLNLQVFKLCLCVIGME 239
Query: 153 S 153
Sbjct: 240 K 240
>gi|297814554|ref|XP_002875160.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297320998|gb|EFH51419.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 266
Score = 77.8 bits (190), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 53/181 (29%), Positives = 82/181 (45%), Gaps = 35/181 (19%)
Query: 3 PTQDRSEIVFFDVETTFPIRHIWEFGAILVCPRKLEELDKYTTLVRPADPSLVSNLCARR 62
P DR ++F D+E F + EF ++V + LE + Y T ++P+D +VS R
Sbjct: 64 PNADR--LLFLDLE--FEKEDVIEFAVLIVDSKTLEAVYNYETFIKPSD-GVVSKFRDRP 118
Query: 63 NDITPEDVFSAPTFADIADTVFDILQA------------------------------PKP 92
N IT + APTF D+ + +F +L P
Sbjct: 119 NGITKAKLQRAPTFLDVHEDIFKVLHGGIWIGHNIIRTDIPLLLKMYRRHNLPEKRIPSF 178
Query: 93 KGTIDSLNLLTERFGRRAGDMKMASLATYFGLGQQTHRSLDDVLMNLEVLKYCATVLLLE 152
+ ID+L L F + +K+ L +F L +QTHRSL+D +NL+V K C V+ +E
Sbjct: 179 RYKIDTLKWLEGNFLGKTQGLKLNELGKFFKLEEQTHRSLEDCDLNLQVFKLCLCVIGME 238
Query: 153 S 153
Sbjct: 239 K 239
>gi|31432192|gb|AAP53854.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 514
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/49 (59%), Positives = 37/49 (75%)
Query: 114 KMASLATYFGLGQQTHRSLDDVLMNLEVLKYCATVLLLESSLPDIFTGN 162
+MA+LA YF LG Q HRSL DV MNL+VLK C+TVL LE + P++ +G
Sbjct: 260 QMANLADYFNLGPQIHRSLYDVRMNLDVLKCCSTVLFLEDNFPELLSGG 308
>gi|413942181|gb|AFW74830.1| hypothetical protein ZEAMMB73_687643 [Zea mays]
Length = 722
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/37 (75%), Positives = 32/37 (86%)
Query: 115 MASLATYFGLGQQTHRSLDDVLMNLEVLKYCATVLLL 151
+ASLA YFGLG+Q HRSLDDV MN++VLK CATVL L
Sbjct: 410 LASLANYFGLGKQRHRSLDDVKMNIDVLKNCATVLFL 446
>gi|163848613|ref|YP_001636657.1| DNA polymerase III subunit epsilon [Chloroflexus aurantiacus
J-10-fl]
gi|222526548|ref|YP_002571019.1| DNA polymerase III subunit epsilon [Chloroflexus sp. Y-400-fl]
gi|163669902|gb|ABY36268.1| DNA polymerase III, epsilon subunit [Chloroflexus aurantiacus
J-10-fl]
gi|222450427|gb|ACM54693.1| DNA polymerase III, epsilon subunit [Chloroflexus sp. Y-400-fl]
Length = 278
Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 51/166 (30%), Positives = 73/166 (43%), Gaps = 54/166 (32%)
Query: 10 IVFFDVETT-------FPIRHI----WEFGAILVCPRKLEELDKYTTLVRP---ADPSLV 55
++FFDVETT I + WE G +E+ + TL+ P DP
Sbjct: 15 LIFFDVETTGLEIQAGHRICEVAMLRWEHG---------QEVGRINTLINPERELDPQ-- 63
Query: 56 SNLCARRNDITPEDVFSAPTFADIADTV----------------------FDILQAPKPK 93
A+ N + P ++ +AP F DIA V ++ +A P
Sbjct: 64 ---AAQINGLQPAELNNAPLFTDIAPQVVQLSQNAVRIAHNLPFDESFLNMELCRAGYPP 120
Query: 94 GT---IDSLNLLTERFGRRAGDMKMASLATYFGLGQQTHRSLDDVL 136
T +D+L L R G R G + +A+LAT FGL THR++DDVL
Sbjct: 121 FTGPALDTLEL-ARRLGIRRGSLSLAALATTFGLPAPTHRAMDDVL 165
>gi|219847899|ref|YP_002462332.1| DNA polymerase III subunit epsilon [Chloroflexus aggregans DSM
9485]
gi|219542158|gb|ACL23896.1| DNA polymerase III, epsilon subunit [Chloroflexus aggregans DSM
9485]
Length = 280
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/157 (29%), Positives = 70/157 (44%), Gaps = 36/157 (22%)
Query: 10 IVFFDVETT-FPIRHIWEFGAILVCPRKLEEL-DKYTTLVRP---ADPSLVSNLCARRND 64
+VFFDVETT +++ + + R+ ++ + TL+ P DP ++ N
Sbjct: 15 LVFFDVETTGLDLQNGHRICELAMLRREHRQITGQINTLINPERELDPQ-----ASQVNG 69
Query: 65 ITPEDVFSAPTFADIADTVFDILQA-------------------------PKPKGTIDSL 99
I ED+ SAP FA++ V + Q P +D+L
Sbjct: 70 IRAEDLQSAPRFAELTVQVVQLSQQAVRVAHNLPFDESFLNMELARAGYPPLTGPALDTL 129
Query: 100 NLLTERFGRRAGDMKMASLATYFGLGQQTHRSLDDVL 136
L R G R G + + +LAT FGL THR++DDVL
Sbjct: 130 EL-ARRLGIRRGSLSLGALATSFGLPTPTHRAMDDVL 165
>gi|297733945|emb|CBI15192.3| unnamed protein product [Vitis vinifera]
Length = 171
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 29/46 (63%)
Query: 156 PDIFTGNGCVSQNATARSRINVRSSPEGTSQNLSAPSSKFKFENAS 201
PDI T + +S N R+R N ++S EG S N+S PSS KFEN S
Sbjct: 107 PDILTTDSWISPNTITRTRANGKASSEGMSLNMSTPSSSLKFENHS 152
>gi|343522506|ref|ZP_08759472.1| exonuclease [Actinomyces sp. oral taxon 175 str. F0384]
gi|343401915|gb|EGV14421.1| exonuclease [Actinomyces sp. oral taxon 175 str. F0384]
Length = 545
Score = 46.2 bits (108), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 62/214 (28%), Positives = 97/214 (45%), Gaps = 46/214 (21%)
Query: 1 MGPTQDRSEIVFFDVETTFPI---RHIWEFGAILVCPRKLEELDKYTTLVRP--ADPSLV 55
MG +R+ V D+ETT R + E GA+ V R + L +++TLV P A P+ +
Sbjct: 6 MGTPLERATFVVVDLETTGGAPGARSLTEIGAVKV--RGGQVLAEFSTLVNPGVAIPAQI 63
Query: 56 SNLCARRNDITPEDVFSAP-------TFADIADTV------------FDI---------- 86
+ L IT V AP TF D AD + FD+
Sbjct: 64 TML----TGITNAMVAGAPGVRTCVETFLDWADLMADDVVLVAHNARFDVGHLRGAAAAL 119
Query: 87 -LQAPKPKGTIDSLNLLTERFGR-RAGDMKMASLATYFGLG-QQTHRSLDDVLMNLEVLK 143
L+ P+P+ +D+L L + + R + K+ +LA + G + THR+LDD ++VL
Sbjct: 120 GLEWPEPR-VLDTLALARKVWTRSEVPNHKLGTLAAFVGSQIRPTHRALDDARATVDVLH 178
Query: 144 YCATVL--LLESSLPDIFTGNGCVSQNATARSRI 175
V+ L + L D+ T + V A+SR+
Sbjct: 179 GALEVMAPLGVTHLEDLATASDPVPAKRRAKSRL 212
>gi|400291850|ref|ZP_10793837.1| exonuclease [Actinomyces naeslundii str. Howell 279]
gi|399903058|gb|EJN85826.1| exonuclease [Actinomyces naeslundii str. Howell 279]
Length = 545
Score = 45.4 bits (106), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 63/214 (29%), Positives = 98/214 (45%), Gaps = 46/214 (21%)
Query: 1 MGPTQDRSEIVFFDVETTFPI---RHIWEFGAILVCPRKLEELDKYTTLVRP--ADPSLV 55
MG +R+ V D+ETT R + E GA+ V R + L ++TLV P A P+ +
Sbjct: 6 MGTPLERATFVVVDLETTGGAPGARSLTEIGAVKV--RGGQVLTDFSTLVNPGVAIPAQI 63
Query: 56 SNLCARRNDITPEDVFSAP----------TFADI-ADTV--------FDI---------- 86
+ L IT V AP T+AD+ AD V FD+
Sbjct: 64 TMLTG----ITNAMVAGAPGVRTCVEAFLTWADLPADDVVLVAHNARFDVGHLRGAAAAL 119
Query: 87 -LQAPKPKGTIDSLNLLTERFGR-RAGDMKMASLATYFG-LGQQTHRSLDDVLMNLEVLK 143
L+ P+P+ +D+L L + + R + K+ +LA + G + THR+LDD ++VL
Sbjct: 120 GLEWPEPR-VLDTLALARKAWTRSEVPNHKLGTLAAFVGSRTRPTHRALDDARATVDVLH 178
Query: 144 YCATVL--LLESSLPDIFTGNGCVSQNATARSRI 175
V+ L + L D+ T + V A+SR+
Sbjct: 179 AALEVMAPLGVTHLEDLTTASDPVPARRRAKSRL 212
>gi|326773509|ref|ZP_08232792.1| DNA polymerase III epsilon subunit, partial [Actinomyces viscosus
C505]
gi|326636739|gb|EGE37642.1| DNA polymerase III epsilon subunit [Actinomyces viscosus C505]
Length = 465
Score = 45.1 bits (105), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 61/214 (28%), Positives = 95/214 (44%), Gaps = 46/214 (21%)
Query: 1 MGPTQDRSEIVFFDVETTFPI---RHIWEFGAILVCPRKLEELDKYTTLVRP--ADPSLV 55
MG +R+ V D+ETT R + E GA+ V R + L +++TLV P A P+ +
Sbjct: 13 MGTPLERATFVVVDLETTGGAPGARSVTEIGAVKV--RGGQVLAEFSTLVNPGVAIPAQI 70
Query: 56 SNLCARRNDITPEDVFSAP-------TFADIADTV------------FDI---------- 86
+ L IT V AP F D AD + FD+
Sbjct: 71 TML----TGITNAMVAGAPGVRTCVEAFLDWADLLADDVILVAHNARFDVGHLRGAAAAV 126
Query: 87 -LQAPKPKGTIDSLNLLTERFGR-RAGDMKMASLATYFGLGQQ-THRSLDDVLMNLEVLK 143
L+ P+P+ +D+L L + R + K+ +LA + G + THR+LDD ++VL
Sbjct: 127 GLEWPEPR-VLDTLALARRAWTRSEVPNHKLGTLAAFVGSQTRPTHRALDDARATVDVLH 185
Query: 144 YCATVL--LLESSLPDIFTGNGCVSQNATARSRI 175
V+ L + L D+ T + V A+SR+
Sbjct: 186 AALEVMAPLGVTHLEDLSTASDPVPARRRAKSRL 219
>gi|118366139|ref|XP_001016288.1| exonuclease family protein [Tetrahymena thermophila]
gi|89298055|gb|EAR96043.1| exonuclease family protein [Tetrahymena thermophila SB210]
Length = 559
Score = 43.9 bits (102), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 37/70 (52%)
Query: 14 DVETTFPIRHIWEFGAILVCPRKLEELDKYTTLVRPADPSLVSNLCARRNDITPEDVFSA 73
D E I+ I EF +++ RK E +D++ + VRP +++ C + IT E V SA
Sbjct: 71 DEEKRLKIQEIIEFPIVVIDLRKKEIIDRFHSFVRPTQYPILTPFCTKLTGITQEQVDSA 130
Query: 74 PTFADIADTV 83
PT ++ V
Sbjct: 131 PTLPEVLKEV 140
>gi|126274490|ref|XP_001387556.1| Glycoside hydrolase, family 17 [Scheffersomyces stipitis CBS 6054]
gi|126213426|gb|EAZ63533.1| Glycoside hydrolase, family 17 [Scheffersomyces stipitis CBS 6054]
Length = 308
Score = 42.4 bits (98), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 55/103 (53%), Gaps = 16/103 (15%)
Query: 54 LVSNLCARRNDITPEDVFSAPTFADIADTVFDILQ------APKPKGTIDSLNLLTERFG 107
LV + R D+TP+++ SA +DI D V DI + P GT+DS N+L + +
Sbjct: 115 LVGSEALYRGDLTPQELASA--ISDIKDIVADIKDKDGNSFSSVPVGTVDSWNVLVDYYS 172
Query: 108 R---RAGDMKMASLATYFGLGQ----QTHRSLDDVLMNLEVLK 143
+ +A D+ A+ +Y+ GQ ++ DD++ L+V++
Sbjct: 173 QPAIKAADVVYANAFSYW-QGQTKANASYSFFDDIMQALQVIQ 214
>gi|386856057|ref|YP_006260234.1| DNA polymerase III subunit epsilon [Deinococcus gobiensis I-0]
gi|379999586|gb|AFD24776.1| DNA polymerase III, epsilon subunit [Deinococcus gobiensis I-0]
Length = 179
Score = 42.0 bits (97), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 42/77 (54%), Gaps = 7/77 (9%)
Query: 10 IVFFDVETTF--PIR-HIWEFGAILVCPRKLEELDKYTTLVRP----ADPSLVSNLCARR 62
+V FD+ETT P R + E GA+ V ++EE KY TLVRP + L+ R
Sbjct: 3 VVVFDLETTGLSPERDAVVEIGAVRVVDGRVEETQKYETLVRPTGAGGERMLIPWRAERV 62
Query: 63 NDITPEDVFSAPTFADI 79
+ I+ E V APT A++
Sbjct: 63 HGISNEMVEDAPTLAEV 79
>gi|55823505|ref|YP_141946.1| DNA polymerase III subunit epsilon [Streptococcus thermophilus
CNRZ1066]
gi|55739490|gb|AAV63131.1| DNA polymerase III epsilon subunit [Streptococcus thermophilus
CNRZ1066]
Length = 196
Score = 41.6 bits (96), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 44/160 (27%), Positives = 70/160 (43%), Gaps = 35/160 (21%)
Query: 13 FDVE--TTFPIRHIWEFGAILVCPRKLEELDKYTTLVRPADP--SLVSNLCARRNDITPE 68
FD+E T + HI + A+ + K E+D+Y + V P S ++ L IT +
Sbjct: 10 FDLEFNTVDGVSHIIQVSAVKMGQHK--EVDQYDSFVYSNVPLQSFINGLTG----ITAD 63
Query: 69 DVFSAPTF--------ADIADT---VFDILQAPKPKGTIDSLNL--------LTERFGRR 109
+ AP A I +T ++ L++ P + LNL E F RR
Sbjct: 64 KIAKAPKLESVLAEFKAFIGNTPLIGYNALKSDLPILAENGLNLEEQYALDVFDEAFDRR 123
Query: 110 AGDM------KMASLATYFGLGQQTHRSLDDVLMNLEVLK 143
A D+ K+ S+A +FG+ H SL+D M ++ K
Sbjct: 124 ASDLNGIVNLKLTSVADFFGIKGHGHNSLEDARMTAQIYK 163
>gi|393201415|ref|YP_006463257.1| Rad3-related DNA helicase [Solibacillus silvestris StLB046]
gi|327440746|dbj|BAK17111.1| Rad3-related DNA helicase [Solibacillus silvestris StLB046]
Length = 926
Score = 41.6 bits (96), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 58/146 (39%), Gaps = 29/146 (19%)
Query: 31 LVCPRKLEELDKYTTLVRPADPSLVSNLCARRNDITPEDVFSAPTFADIADTVFDILQAP 90
+V + E + KY+T + P P + +IT EDV A F AD ++++L+
Sbjct: 30 IVIMQGWEIVKKYSTFINPGKP--IPLFIQDLTNITDEDVKDALPFEAYADYIYELLEGA 87
Query: 91 K--PKGTIDSLNLLTERFGRRAG-----------------------DMKMASLATYFG-L 124
T LN L F R AG K++ LA F L
Sbjct: 88 VFVAHNTDFDLNFLQAEFNR-AGLSKWHGKKIDTVELTKILFPMSLSYKLSDLANDFNIL 146
Query: 125 GQQTHRSLDDVLMNLEVLKYCATVLL 150
Q HR+ DD L +LK+C LL
Sbjct: 147 LQSAHRADDDALATAYLLKHCWEELL 172
>gi|406665659|ref|ZP_11073431.1| Rad3-related DNA helicase [Bacillus isronensis B3W22]
gi|405386524|gb|EKB45951.1| Rad3-related DNA helicase [Bacillus isronensis B3W22]
Length = 926
Score = 41.6 bits (96), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 58/146 (39%), Gaps = 29/146 (19%)
Query: 31 LVCPRKLEELDKYTTLVRPADPSLVSNLCARRNDITPEDVFSAPTFADIADTVFDILQAP 90
+V + E + KY+T + P P + +IT EDV A F AD ++++L+
Sbjct: 30 IVIMQGWEIVKKYSTFINPGKP--IPLFIQDLTNITDEDVKDALPFEAYADYIYELLEGA 87
Query: 91 K--PKGTIDSLNLLTERFGRRAG-----------------------DMKMASLATYFG-L 124
T LN L F R AG K++ LA F L
Sbjct: 88 VFVAHNTDFDLNFLQAEFNR-AGLSKWHGKKIDTVELTKILFPMSLSYKLSDLANDFNIL 146
Query: 125 GQQTHRSLDDVLMNLEVLKYCATVLL 150
Q HR+ DD L +LK+C LL
Sbjct: 147 LQSAHRADDDALATAYLLKHCWEELL 172
>gi|434384994|ref|YP_007095605.1| inhibitor of the KinA pathway to sporulation, predicted
exonuclease [Chamaesiphon minutus PCC 6605]
gi|428015984|gb|AFY92078.1| inhibitor of the KinA pathway to sporulation, predicted
exonuclease [Chamaesiphon minutus PCC 6605]
Length = 192
Score = 39.7 bits (91), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 30/53 (56%)
Query: 26 EFGAILVCPRKLEELDKYTTLVRPADPSLVSNLCARRNDITPEDVFSAPTFAD 78
E GA++V L +D++ T ++P +++ C + IT + V +APTF D
Sbjct: 36 EIGAVMVSTDNLAIVDEFQTFIKPIRHPILTEFCLQLTSITQQQVNTAPTFPD 88
>gi|228998363|ref|ZP_04157954.1| DNA polymerase III alpha subunit [Bacillus mycoides Rock3-17]
gi|228761284|gb|EEM10239.1| DNA polymerase III alpha subunit [Bacillus mycoides Rock3-17]
Length = 315
Score = 39.3 bits (90), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 34/64 (53%)
Query: 85 DILQAPKPKGTIDSLNLLTERFGRRAGDMKMASLATYFGLGQQTHRSLDDVLMNLEVLKY 144
++L+ P+PK + L +R+ + A + K+ +L G+ +H +LDD + V +
Sbjct: 108 NMLRLPEPKNIVIDTVFLAKRYMKHAPNHKLETLKRMLGICLSSHNALDDCITCAAVYQK 167
Query: 145 CATV 148
CA +
Sbjct: 168 CAAI 171
>gi|229005847|ref|ZP_04163541.1| DNA polymerase III alpha subunit [Bacillus mycoides Rock1-4]
gi|228755311|gb|EEM04662.1| DNA polymerase III alpha subunit [Bacillus mycoides Rock1-4]
Length = 286
Score = 39.3 bits (90), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 34/64 (53%)
Query: 85 DILQAPKPKGTIDSLNLLTERFGRRAGDMKMASLATYFGLGQQTHRSLDDVLMNLEVLKY 144
++L+ P+PK + L +R+ + A + K+ +L G+ +H +LDD + V +
Sbjct: 79 NMLRLPEPKNIVIDTVFLAKRYMKHAPNHKLETLKRMLGIRLSSHNALDDCITCAAVYQK 138
Query: 145 CATV 148
CA +
Sbjct: 139 CAAI 142
>gi|228992309|ref|ZP_04152240.1| DNA polymerase III alpha subunit [Bacillus pseudomycoides DSM
12442]
gi|228767334|gb|EEM15966.1| DNA polymerase III alpha subunit [Bacillus pseudomycoides DSM
12442]
Length = 315
Score = 39.3 bits (90), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 33/63 (52%)
Query: 86 ILQAPKPKGTIDSLNLLTERFGRRAGDMKMASLATYFGLGQQTHRSLDDVLMNLEVLKYC 145
+L+ P+PK + L +R+ + A + K+ +L G+ +H +LDD + V + C
Sbjct: 109 MLRLPEPKNIVIDTVFLAKRYMKHARNHKLETLKRMLGIRLSSHNALDDCITCAAVYQKC 168
Query: 146 ATV 148
A +
Sbjct: 169 AAI 171
>gi|332653929|ref|ZP_08419673.1| putative DNA polymerase III, epsilon subunit [Ruminococcaceae
bacterium D16]
gi|332517015|gb|EGJ46620.1| putative DNA polymerase III, epsilon subunit [Ruminococcaceae
bacterium D16]
Length = 236
Score = 39.3 bits (90), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 47/101 (46%), Gaps = 5/101 (4%)
Query: 94 GTIDSLNLLTERFGRRAGDMKMASLATYF---GLGQQTHRSLDDVLMNLEVLKYCATVLL 150
G ID L+ LT RRA K+A+ + G Q +HR++DDVL EVLK
Sbjct: 127 GRIDWLDSLTVYKDRRAYPHKLANAIIAYDLTGKVQNSHRAIDDVLALFEVLKAMDDERE 186
Query: 151 LESSLPDIFTGNGCVSQNATARSRINVRSSPEGTSQNLSAP 191
S ++F N + R + VR P+ S+ L+ P
Sbjct: 187 DLGSYVNLFGYN--PKYGVSGRRIVGVRYEPQSFSKGLTRP 225
>gi|329946892|ref|ZP_08294304.1| GIY-YIG catalytic domain protein [Actinomyces sp. oral taxon 170
str. F0386]
gi|328526703|gb|EGF53716.1| GIY-YIG catalytic domain protein [Actinomyces sp. oral taxon 170
str. F0386]
Length = 552
Score = 38.9 bits (89), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 67/231 (29%), Positives = 101/231 (43%), Gaps = 49/231 (21%)
Query: 1 MGPTQDRSEIVFFDVETTFPI---RHIWEFGAILVCPRKLEELDKYTTLVRP--ADPSLV 55
MG R+ V D+ETT + + E GA V R + L + TLV P A P+ +
Sbjct: 13 MGTPLKRATFVVVDLETTGGAPGAQALTEIGA--VKARGGQVLTDFFTLVNPGVAIPAQI 70
Query: 56 SNLCARRNDITPEDVFSAP-------TFADIADTV------------FDI---------- 86
+ L IT V AP F D AD + FD+
Sbjct: 71 TML----TGITNAMVAGAPGVRTCVEAFLDWADLLAGDVVLVAHNARFDVGHLRGAAAAL 126
Query: 87 -LQAPKPKGTIDSLNLLTERFGR-RAGDMKMASLATYFGLGQQ-THRSLDDVLMNLEVLK 143
L+ P+P+ +D+L L + + R + K+ +LA + G + THR+LDD ++VL
Sbjct: 127 GLEWPEPR-VLDTLALARKAWTRSEVPNHKLGTLAAFVGSQTRPTHRALDDACATVDVLH 185
Query: 144 YCATVL--LLESSLPDIFTGNGCVSQNATARSRI--NVRSSPEGTSQNLSA 190
V+ L + L D+ T + V A+SR+ ++ SSP G Q SA
Sbjct: 186 AALEVMAPLGVTHLEDLATASDPVPVRRRAKSRLADDLPSSP-GIYQFRSA 235
>gi|15805882|ref|NP_294580.1| DNA polymerase III subunit epsilon [Deinococcus radiodurans R1]
gi|6458571|gb|AAF10431.1|AE001939_8 DNA polymerase III, epsilon subunit, putative [Deinococcus
radiodurans R1]
Length = 197
Score = 38.5 bits (88), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 44/86 (51%), Gaps = 7/86 (8%)
Query: 9 EIVFFDVETTF---PIRHIWEFGAILVCPRKLEELDKYTTLVRPADP--SLVS--NLCAR 61
++V FD+ETT I E GA+ + +++E K+ TLVRP P SL+S R
Sbjct: 22 DVVVFDLETTGFSPASAAIVEIGAVRIVGGQIDETLKFETLVRPTRPDGSLLSIPWQAQR 81
Query: 62 RNDITPEDVFSAPTFADIADTVFDIL 87
+ I+ E V AP D+ FD +
Sbjct: 82 VHGISDEMVRRAPAIKDVLPDFFDFV 107
>gi|335040442|ref|ZP_08533570.1| DNA polymerase III, epsilon subunit [Caldalkalibacillus thermarum
TA2.A1]
gi|334179631|gb|EGL82268.1| DNA polymerase III, epsilon subunit [Caldalkalibacillus thermarum
TA2.A1]
Length = 258
Score = 38.5 bits (88), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 42/84 (50%), Gaps = 10/84 (11%)
Query: 10 IVFFDVETT--FPIR--HIWEFGAILVCPRKLEELDKYTTLVRP--ADPSLVSNLCARRN 63
+V FDVETT FP + I GA+ + + E D TLVR + P VS L
Sbjct: 62 VVVFDVETTGFFPEQGDRILSIGAVRAVGQHILEEDSLYTLVRSDVSIPREVSQLTG--- 118
Query: 64 DITPEDVFSAPTFADIADTVFDIL 87
IT +D+ SAP AD+ F+ +
Sbjct: 119 -ITEDDLASAPVLADVLTQFFNFI 141
>gi|223984468|ref|ZP_03634601.1| hypothetical protein HOLDEFILI_01895 [Holdemania filiformis DSM
12042]
gi|223963539|gb|EEF67918.1| hypothetical protein HOLDEFILI_01895 [Holdemania filiformis DSM
12042]
Length = 1451
Score = 38.5 bits (88), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 44/80 (55%), Gaps = 7/80 (8%)
Query: 11 VFFDVETT---FPIRHIWEFGAILVCPRKLEELDKYTTLVRPADPSLVSNLCARRNDITP 67
V +D+ETT HI EFGA+++ +++E + V+P P ++ + + +IT
Sbjct: 400 VVYDLETTGLSCSFDHIIEFGAVVIERGEIKETKQ--LFVKPPVP--INAFISEKTNITN 455
Query: 68 EDVFSAPTFADIADTVFDIL 87
EDV A FA++A + D +
Sbjct: 456 EDVAQAKPFAEVAQELVDFI 475
>gi|321477963|gb|EFX88921.1| hypothetical protein DAPPUDRAFT_311056 [Daphnia pulex]
Length = 349
Score = 38.5 bits (88), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 36/70 (51%)
Query: 22 RHIWEFGAILVCPRKLEELDKYTTLVRPADPSLVSNLCARRNDITPEDVFSAPTFADIAD 81
+ I EF A+L+ +K E D++ + RP L++ C IT +DV AP F ++
Sbjct: 135 QEIIEFPAVLLNCQKGEVEDEFRSYCRPVLNPLLTEFCTELTGITQDDVDKAPLFHEVLT 194
Query: 82 TVFDILQAPK 91
+ + LQ K
Sbjct: 195 SFEEWLQKKK 204
>gi|348553710|ref|XP_003462669.1| PREDICTED: 3'-5' exoribonuclease 1-like [Cavia porcellus]
Length = 343
Score = 38.5 bits (88), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 39/84 (46%), Gaps = 1/84 (1%)
Query: 21 IRHIWEFGAILVCPRKLEELDKYTTLVRPADPSLVSNLCARRNDITPEDVFSAPTFADIA 80
I I EF +L+ LE D + VRP + +S+ C R IT + V A TF +
Sbjct: 142 IHEIIEFPVVLLNTHTLEIEDTFQQYVRPEINTQLSDFCIRLTGITQDQVDRADTFPQVL 201
Query: 81 DTVFDILQAPKPKGTIDSLNLLTE 104
V D ++ K GT +LT+
Sbjct: 202 KKVIDWMKL-KELGTKYKYCILTD 224
>gi|229918731|ref|YP_002887377.1| bifunctional ATP-dependent DNA helicase/DNA polymerase III
subunit epsilon [Exiguobacterium sp. AT1b]
gi|229470160|gb|ACQ71932.1| DnaQ family exonuclease/DinG family helicase [Exiguobacterium sp.
AT1b]
Length = 936
Score = 38.1 bits (87), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 38/62 (61%), Gaps = 4/62 (6%)
Query: 26 EFGAILVCPRKLEELDKYTTLVRPADPSLVSNLCARRNDITPEDVFSAPTFADIADTVFD 85
EF A++V ++ E +++Y+TL+RP+ P + + I+ EDV APTF D+ ++
Sbjct: 24 EFAAVVV--QEGEVIERYSTLIRPSRP--IPPFITQLTTISDEDVSDAPTFEDVIPDIWK 79
Query: 86 IL 87
+L
Sbjct: 80 ML 81
>gi|423669181|ref|ZP_17644210.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
VDM034]
gi|423674690|ref|ZP_17649629.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
VDM062]
gi|401299738|gb|EJS05334.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
VDM034]
gi|401309272|gb|EJS14637.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
VDM062]
Length = 315
Score = 38.1 bits (87), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 35/151 (23%), Positives = 63/151 (41%), Gaps = 32/151 (21%)
Query: 24 IWEFGAILVCPRKLEELDKYTTLVRPADP--SLVSNLCARRNDITPEDVFSAPTFADI-- 79
I + A+ C +L +D++ + V P P S +++L IT V APT A++
Sbjct: 27 IIQVAAVKYCNHEL--VDQFVSYVNPERPIPSRITSLTG----ITNYRVSDAPTIAEVLP 80
Query: 80 -------------ADTVFDI---------LQAPKPKGTIDSLNLLTERFGRRAGDMKMAS 117
+ FD+ L P+PK + L +++ + A + K+ +
Sbjct: 81 LFLAFLDTNIIVAHNASFDMRFLKSNVNMLGLPEPKNNVIDTVFLAKKYMKHAPNHKLET 140
Query: 118 LATYFGLGQQTHRSLDDVLMNLEVLKYCATV 148
L G+ +H + DD + V + CA V
Sbjct: 141 LKRMLGIRLSSHNAFDDCITCAAVYQKCAAV 171
>gi|162449255|ref|YP_001611622.1| exonuclease [Sorangium cellulosum So ce56]
gi|161159837|emb|CAN91142.1| predicted exonuclease [Sorangium cellulosum So ce56]
Length = 191
Score = 38.1 bits (87), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 29/56 (51%)
Query: 21 IRHIWEFGAILVCPRKLEELDKYTTLVRPADPSLVSNLCARRNDITPEDVFSAPTF 76
I I E GA+LV LE + + T VRP ++ C + IT DV +APTF
Sbjct: 27 IMEIIEIGAVLVDGATLEPVSELATFVRPVIRPRLTEFCTKLTTITQADVDAAPTF 82
>gi|119920012|ref|XP_001253741.1| PREDICTED: 3'-5' exoribonuclease 1 [Bos taurus]
gi|297492734|ref|XP_002699843.1| PREDICTED: 3'-5' exoribonuclease 1 [Bos taurus]
gi|296471031|tpg|DAA13146.1| TPA: three prime histone mRNA exonuclease 1-like [Bos taurus]
Length = 370
Score = 38.1 bits (87), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 39/84 (46%), Gaps = 1/84 (1%)
Query: 21 IRHIWEFGAILVCPRKLEELDKYTTLVRPADPSLVSNLCARRNDITPEDVFSAPTFADIA 80
I I EF +L+ LE D + VRP + +S+ C IT + V A TF +
Sbjct: 148 IHEIIEFSVVLLNTHTLEIEDTFQQYVRPEINTQLSDFCINLTGITQDQVDKADTFPQVL 207
Query: 81 DTVFDILQAPKPKGTIDSLNLLTE 104
V D ++ K GT ++LT+
Sbjct: 208 KKVIDWMKL-KELGTKYKYSILTD 230
>gi|312092765|ref|XP_003147452.1| exonuclease [Loa loa]
Length = 401
Score = 37.7 bits (86), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 36/66 (54%), Gaps = 2/66 (3%)
Query: 24 IWEFGAILVCPRKLEELDKYTTLVRP-ADPSLVSNLCARRNDITPEDVFSAPTFADIADT 82
I EF AILV RK E +D + + VRP A+P L S C+ IT E V A F D+ D+
Sbjct: 170 IIEFPAILVDVRKKEIVDVFHSYVRPLANPQL-SEFCSAFTGITQEMVDKALPFIDVLDS 228
Query: 83 VFDILQ 88
+Q
Sbjct: 229 FRAWMQ 234
>gi|393911376|gb|EFO16618.2| exonuclease [Loa loa]
Length = 388
Score = 37.7 bits (86), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 36/66 (54%), Gaps = 2/66 (3%)
Query: 24 IWEFGAILVCPRKLEELDKYTTLVRP-ADPSLVSNLCARRNDITPEDVFSAPTFADIADT 82
I EF AILV RK E +D + + VRP A+P L S C+ IT E V A F D+ D+
Sbjct: 157 IIEFPAILVDVRKKEIVDVFHSYVRPLANPQL-SEFCSAFTGITQEMVDKALPFIDVLDS 215
Query: 83 VFDILQ 88
+Q
Sbjct: 216 FRAWMQ 221
>gi|257867744|ref|ZP_05647397.1| DNA polymerase III [Enterococcus casseliflavus EC30]
gi|257874072|ref|ZP_05653725.1| DNA polymerase III [Enterococcus casseliflavus EC10]
gi|257801827|gb|EEV30730.1| DNA polymerase III [Enterococcus casseliflavus EC30]
gi|257808236|gb|EEV37058.1| DNA polymerase III [Enterococcus casseliflavus EC10]
Length = 918
Score = 37.4 bits (85), Expect = 7.8, Method: Composition-based stats.
Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 7/77 (9%)
Query: 14 DVETT---FPIRHIWEFGAILVCPRKLEELDKYTTLVRPADPSLVSNLCARRNDITPEDV 70
D+ETT I I +FG +LV K+ ++++ + P +S R IT + V
Sbjct: 9 DLETTGTDSTIDRIIQFGCVLVQDGKI--INRFAADINP--DRRISKQIQRLTHITNQQV 64
Query: 71 FSAPTFADIADTVFDIL 87
AP F DIADT++++L
Sbjct: 65 SKAPYFEDIADTIYNLL 81
>gi|257876649|ref|ZP_05656302.1| DNA polymerase III [Enterococcus casseliflavus EC20]
gi|257810815|gb|EEV39635.1| DNA polymerase III [Enterococcus casseliflavus EC20]
Length = 918
Score = 37.4 bits (85), Expect = 7.9, Method: Composition-based stats.
Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 7/77 (9%)
Query: 14 DVETT---FPIRHIWEFGAILVCPRKLEELDKYTTLVRPADPSLVSNLCARRNDITPEDV 70
D+ETT I I +FG +LV K+ ++++ + P +S R IT + V
Sbjct: 9 DLETTGTDSTIDRIIQFGCVLVQDGKI--INRFAADINP--DRRISKQIQRLTHITNQQV 64
Query: 71 FSAPTFADIADTVFDIL 87
AP F DIADT++++L
Sbjct: 65 SKAPYFEDIADTIYNLL 81
>gi|375110632|ref|ZP_09756852.1| DNA polymerase III, epsilon subunit [Alishewanella jeotgali KCTC
22429]
gi|374569206|gb|EHR40369.1| DNA polymerase III, epsilon subunit [Alishewanella jeotgali KCTC
22429]
Length = 749
Score = 37.4 bits (85), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 43/83 (51%), Gaps = 11/83 (13%)
Query: 11 VFFDVETT---FPIRHIWEFGAILVCPRKLEELDKYTTLVRPAD--PSLVSNLCARRNDI 65
V DVETT + E GA+ V + E LD ++TL+ P PS +S L N +
Sbjct: 585 VVLDVETTGGKAGTDRVIEIGAVKV--QAGEVLDTFSTLLNPGRTIPSFISRLTGISNAM 642
Query: 66 TPEDVFSAPTFADIADTVFDILQ 88
V APTFADIAD + + L+
Sbjct: 643 ----VADAPTFADIADKLAEFLR 661
>gi|167563688|ref|ZP_02356604.1| possible DNA polymerase/helicase [Burkholderia oklahomensis
EO147]
Length = 405
Score = 37.4 bits (85), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 43/83 (51%), Gaps = 12/83 (14%)
Query: 10 IVFFDVETTF--PIRH-IWEFGAILVCPRKLEELDKYTTLVRP--ADPSLVSNLCARRND 64
+ F D+ETT + H I E G ++V + + +TTLV P A P + L
Sbjct: 15 LAFVDLETTGGSAVEHRITEIGVVVVSA---DHVSTWTTLVNPRQAIPPFIQQLTG---- 67
Query: 65 ITPEDVFSAPTFADIADTVFDIL 87
IT + V APTFAD+A +F+ L
Sbjct: 68 ITDDMVRGAPTFADVASALFERL 90
>gi|300864441|ref|ZP_07109312.1| Exonuclease RNase T and DNA polymerase III [Oscillatoria sp. PCC
6506]
gi|300337585|emb|CBN54460.1| Exonuclease RNase T and DNA polymerase III [Oscillatoria sp. PCC
6506]
Length = 192
Score = 37.4 bits (85), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 31/55 (56%)
Query: 24 IWEFGAILVCPRKLEELDKYTTLVRPADPSLVSNLCARRNDITPEDVFSAPTFAD 78
I E GA++V P+ L +D++ T ++P +++ C I+ + V APT+ +
Sbjct: 35 IIEIGAVMVEPKNLTIVDEFQTFIKPVRHPILTEFCKSLTSISQKQVDLAPTYPE 89
>gi|423511605|ref|ZP_17488136.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
HuA2-1]
gi|402451219|gb|EJV83044.1| exonuclease, DNA polymerase III, epsilon subunit [Bacillus cereus
HuA2-1]
Length = 315
Score = 37.0 bits (84), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 33/140 (23%), Positives = 58/140 (41%), Gaps = 30/140 (21%)
Query: 35 RKLEELDKYTTLVRPADP--SLVSNLCARRNDITPEDVFSAPTFADI------------- 79
R E +D++ + V P P S +++L IT V APT A++
Sbjct: 36 RNHEMIDQFVSYVNPERPIPSRITSLTG----ITNYRVSDAPTIAEVLPLFLAFLDTNII 91
Query: 80 --ADTVFDI---------LQAPKPKGTIDSLNLLTERFGRRAGDMKMASLATYFGLGQQT 128
+ FD+ L P+PK + L +++ + A + K+ +L G+ +
Sbjct: 92 VAHNASFDMRFLKSNVNMLGLPEPKNNVIDTVFLAKKYMKHAPNHKLETLKRMLGIRLSS 151
Query: 129 HRSLDDVLMNLEVLKYCATV 148
H + DD + V + CA V
Sbjct: 152 HNAFDDCITCAAVYQNCAAV 171
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.314 0.130 0.370
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,637,194,703
Number of Sequences: 23463169
Number of extensions: 183584892
Number of successful extensions: 355163
Number of sequences better than 100.0: 122
Number of HSP's better than 100.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 47
Number of HSP's that attempted gapping in prelim test: 354903
Number of HSP's gapped (non-prelim): 155
length of query: 304
length of database: 8,064,228,071
effective HSP length: 142
effective length of query: 162
effective length of database: 9,027,425,369
effective search space: 1462442909778
effective search space used: 1462442909778
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 76 (33.9 bits)