BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048020
(304 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q10384|Y2191_MYCTU Uncharacterized protein Rv2191/MT2247 OS=Mycobacterium tuberculosis
GN=Rv2191 PE=4 SV=1
Length = 645
Score = 35.8 bits (81), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 59/202 (29%), Positives = 80/202 (39%), Gaps = 55/202 (27%)
Query: 11 VFFDVETT---------FPIRHIWEFGAILVCPRKLEELDKYTTLVRPAD---PSLVSNL 58
V D+ETT P I E GA+ VC + L ++ TLV P P +V
Sbjct: 44 VVVDLETTGGRTTGNDATPPDAITEIGAVKVCGGAV--LGEFATLVNPQHSIPPQIV--- 98
Query: 59 CARRNDITPEDVFSAPT--------FADIADTV-------FDI--LQAPKPKGTIDSLN- 100
R IT V +APT F D+V FDI L+A + I
Sbjct: 99 --RLTGITTAMVGNAPTIDAVLPMFFEFAGDSVLVAHNAGFDIGFLRAAARRCDITWPQP 156
Query: 101 --LLTERFGRR------AGDMKMASLATYFGLGQQ-THRSLDDVLMNLEVL--------- 142
L T R RR A +++A+LA F + THR+LDD ++VL
Sbjct: 157 QVLCTMRLARRVLSRDEAPSVRLAALARLFAVASNPTHRALDDARATVDVLHALIERVGN 216
Query: 143 KYCATVLLLESSLPDIFTGNGC 164
+ T L S LP++ C
Sbjct: 217 QGVHTYAELRSYLPNVTQAQRC 238
>sp|Q6KHV9|GPMI_MYCMO 2,3-bisphosphoglycerate-independent phosphoglycerate mutase
OS=Mycoplasma mobile (strain ATCC 43663 / 163K / NCTC
11711) GN=gpmI PE=3 SV=1
Length = 510
Score = 33.9 bits (76), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 23/35 (65%)
Query: 71 FSAPTFADIADTVFDILQAPKPKGTIDSLNLLTER 105
++ T A+IA T+ D L+ PKPK +DSL + +R
Sbjct: 473 LNSGTLANIAPTILDYLKIPKPKNMLDSLIMNNKR 507
>sp|O44406|ERI1_CAEEL 3'-5' exonuclease eri-1 OS=Caenorhabditis elegans GN=eri-1 PE=1
SV=2
Length = 582
Score = 33.9 bits (76), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 43/96 (44%), Gaps = 13/96 (13%)
Query: 1 MGPTQDRSEIVFFD-----------VETTFPIRH-IWEFGAILVCPRKLEELDKYTTLVR 48
M P D++ FFD VE + H I E A+L+ R+++ + ++ T VR
Sbjct: 137 MEPNADKT-ARFFDYLIAIDFECTCVEIIYDYPHEIIELPAVLIDVREMKIISEFRTYVR 195
Query: 49 PADPSLVSNLCARRNDITPEDVFSAPTFADIADTVF 84
P +S C + I E V +AP F + ++
Sbjct: 196 PVRNPKLSEFCMQFTKIAQETVDAAPYFREALQRLY 231
>sp|B5EN11|METK_ACIF5 S-adenosylmethionine synthase OS=Acidithiobacillus ferrooxidans
(strain ATCC 53993) GN=metK PE=3 SV=1
Length = 389
Score = 33.1 bits (74), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 40/85 (47%), Gaps = 3/85 (3%)
Query: 79 IADTVFDILQAPKPKGTIDSLNLLTERFGRRAGDMKMASLATYFGLGQQTHRSL--DDVL 136
I+D + D + A P+G + + L+T AG++ ++ Y + +QT R + +
Sbjct: 24 ISDAILDAILAQDPRGRVAAETLITTGLIVLAGEITTTAVVDYADVARQTVRRIGYNSSD 83
Query: 137 MNLEVLKYCATVLLLESSLPDIFTG 161
M + CA V L+ PDI G
Sbjct: 84 MGFD-WASCAVVQTLDKQSPDIAQG 107
>sp|B7J551|METK_ACIF2 S-adenosylmethionine synthase OS=Acidithiobacillus ferrooxidans
(strain ATCC 23270 / DSM 14882 / NCIB 8455) GN=metK PE=3
SV=1
Length = 389
Score = 33.1 bits (74), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 40/85 (47%), Gaps = 3/85 (3%)
Query: 79 IADTVFDILQAPKPKGTIDSLNLLTERFGRRAGDMKMASLATYFGLGQQTHRSL--DDVL 136
I+D + D + A P+G + + L+T AG++ ++ Y + +QT R + +
Sbjct: 24 ISDAILDAILAQDPRGRVAAETLITTGLIVLAGEITTTAVVDYADVARQTVRRIGYNSSD 83
Query: 137 MNLEVLKYCATVLLLESSLPDIFTG 161
M + CA V L+ PDI G
Sbjct: 84 MGFD-WASCAVVQTLDKQSPDIAQG 107
>sp|Q8NDA2|HMCN2_HUMAN Hemicentin-2 OS=Homo sapiens GN=HMCN2 PE=2 SV=2
Length = 5065
Score = 32.0 bits (71), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 36/81 (44%), Gaps = 8/81 (9%)
Query: 164 CVSQN----ATARSRINVRSSPEGTSQNLSAPSSKFKFE----NASNVSPPDQGKEGIHP 215
CV+ N ATAR+ + VR P+G+ +++ + KF N S + G IH
Sbjct: 4378 CVAHNLLGSATARAFLVVRGEPQGSWGSMTGVINGRKFGVATLNTSVMQEAHSGVSSIHS 4437
Query: 216 IFTLVTQGTGELDSVLAVTTA 236
V G L VL VT A
Sbjct: 4438 SIRHVPANVGPLMRVLVVTIA 4458
>sp|Q4JY42|LDH_CORJK L-lactate dehydrogenase OS=Corynebacterium jeikeium (strain K411)
GN=ldh PE=3 SV=1
Length = 326
Score = 31.6 bits (70), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 39/169 (23%), Positives = 63/169 (37%), Gaps = 28/169 (16%)
Query: 60 ARRNDITPEDVFSAPTFADIADTVFDILQAPKPKGTIDSLNLLTERFGRRAGD------- 112
R D+ P V A + DT +L A GT S++ E G A +
Sbjct: 170 GRYFDLAPTSV-HAYVIGEHGDTELPVLSAGSVAGT--SIHHRLEMIGESADEDVDEIFV 226
Query: 113 --------MKMASLATYFGLGQQTHRSLDDVLMNLEVLKYCATVLLLESSLPDIFTGNGC 164
+ A +T FG+G R V N +V+ +T+L E DI+ G
Sbjct: 227 KTRDAAYEIIQAKGSTSFGIGMGLARITQAVFSNQDVVLPISTLLQGEYGFEDIYIGTPA 286
Query: 165 VSQNATARSRINVRSSPEGTSQNLSAPSSKFKFENASNVSPPDQGKEGI 213
V R + ++ E K +F++++NV G+ G+
Sbjct: 287 VINRQGVRHAVELQLDSE----------EKERFDHSANVLRKVMGEAGL 325
>sp|Q6ZPV2|INO80_MOUSE DNA helicase INO80 OS=Mus musculus GN=Ino80 PE=2 SV=2
Length = 1559
Score = 31.2 bits (69), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 35/62 (56%), Gaps = 10/62 (16%)
Query: 228 DSVLAVTTADQPNPFDMSQLSNQMETQSLQPDDTMED---------KSAPESREMCSTAS 278
DS ++V +A P+PF +S+++ T S+ PD++ D SAP+SR S AS
Sbjct: 1347 DSFISVDSA-MPSPFSEISISSELHTGSIPPDESSSDMLVIVDDPASSAPQSRATNSPAS 1405
Query: 279 VS 280
++
Sbjct: 1406 IT 1407
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.130 0.370
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 109,627,574
Number of Sequences: 539616
Number of extensions: 4374573
Number of successful extensions: 8356
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 8349
Number of HSP's gapped (non-prelim): 27
length of query: 304
length of database: 191,569,459
effective HSP length: 117
effective length of query: 187
effective length of database: 128,434,387
effective search space: 24017230369
effective search space used: 24017230369
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 61 (28.1 bits)