Query 048020
Match_columns 304
No_of_seqs 325 out of 1524
Neff 5.8
Searched_HMMs 29240
Date Mon Mar 25 09:14:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048020.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/048020hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2p1j_A POLIII, DNA polymerase 100.0 1.5E-28 5.2E-33 214.8 17.8 138 7-150 11-177 (186)
2 1w0h_A 3'-5' exonuclease ERI1; 100.0 1.7E-27 5.8E-32 209.5 17.9 144 5-149 7-195 (204)
3 2gui_A DNA polymerase III epsi 100.0 3.6E-27 1.2E-31 206.4 18.2 138 5-148 6-184 (194)
4 3mxm_B Three prime repair exon 99.9 1.8E-27 6E-32 217.2 13.2 144 4-149 8-215 (242)
5 1y97_A Three prime repair exon 99.9 1.1E-26 3.6E-31 209.4 16.4 148 1-150 3-211 (238)
6 2xri_A ERI1 exoribonuclease 3; 99.9 3.7E-26 1.3E-30 205.5 18.9 138 8-149 31-214 (224)
7 3cg7_A CRN-4, cell death-relat 99.9 7.7E-26 2.6E-30 213.4 16.1 143 6-149 17-209 (308)
8 1zbh_A 3'-5' exonuclease ERI1; 99.9 1.3E-25 4.6E-30 210.5 17.6 144 6-149 76-263 (299)
9 3u3y_B Three prime repair exon 99.9 7.3E-26 2.5E-30 214.6 14.2 143 5-149 9-215 (314)
10 2f96_A Ribonuclease T; RNAse, 99.9 3.3E-25 1.1E-29 198.7 17.6 140 7-150 28-214 (224)
11 1wlj_A Interferon stimulated g 99.9 3E-25 1E-29 194.5 11.7 137 7-150 4-170 (189)
12 3v9w_A Ribonuclease T; DEDD nu 99.9 4.9E-24 1.7E-28 192.1 19.0 140 7-150 36-222 (235)
13 1zbu_A ERI-1 homolog, 3'-5' ex 99.9 7.9E-25 2.7E-29 210.1 13.6 143 7-149 127-313 (349)
14 2igi_A Oligoribonuclease; RNAs 99.9 2.3E-24 7.9E-29 186.4 11.0 133 6-150 3-178 (180)
15 2qxf_A Exodeoxyribonuclease I; 99.9 4.2E-23 1.4E-27 205.7 15.5 140 6-148 7-200 (482)
16 3tr8_A Oligoribonuclease; tran 99.9 5E-23 1.7E-27 181.7 10.0 134 5-150 6-182 (186)
17 2gbz_A Oligoribonuclease; ORN, 99.9 6.6E-23 2.3E-27 180.4 10.7 142 6-150 7-182 (194)
18 4hec_A Putative uncharacterize 98.7 1.7E-07 5.8E-12 82.8 12.1 134 8-148 22-181 (190)
19 2kfn_A Klenow fragment of DNA 98.5 1.8E-06 6.3E-11 87.8 16.0 120 8-150 26-194 (605)
20 4gmj_B CCR4-NOT transcription 98.1 5.3E-05 1.8E-09 70.7 13.7 138 8-150 34-246 (285)
21 2d5r_A CCR4-NOT transcription 97.5 0.0008 2.7E-08 61.7 11.1 138 8-150 24-236 (252)
22 1x9m_A DNA polymerase; DNA plo 97.4 2.3E-05 7.7E-10 81.1 0.0 61 89-150 81-184 (698)
23 2p51_A SPCC18.06C protein; DED 97.3 0.0029 9.8E-08 60.1 13.6 139 7-150 44-257 (333)
24 1uoc_A POP2; hydrolase, DEDD n 97.2 0.004 1.4E-07 58.1 12.7 140 7-150 37-266 (289)
25 4dfk_A DNA polymerase I, therm 96.0 0.12 4.1E-06 51.9 14.8 58 87-149 71-128 (540)
26 3f2b_A DNA-directed DNA polyme 95.9 0.00053 1.8E-08 73.8 -3.0 45 171-215 200-250 (1041)
27 1qht_A Protein (DNA polymerase 94.7 0.26 9E-06 51.4 12.6 117 7-147 134-328 (775)
28 1noy_A Protein (DNA polymerase 94.3 0.67 2.3E-05 44.2 13.6 51 95-145 267-335 (388)
29 2e6m_A Werner syndrome ATP-dep 91.0 1.7 5.9E-05 37.1 10.4 74 75-150 103-196 (208)
30 3saf_A Exosome component 10; e 90.8 1.7 5.9E-05 42.2 11.3 55 93-150 206-278 (428)
31 3iay_A DNA polymerase delta ca 89.4 5.2 0.00018 42.6 14.4 125 7-145 248-465 (919)
32 2hbj_A Exosome complex exonucl 88.0 6.1 0.00021 37.9 12.8 70 77-150 168-255 (410)
33 3pv8_A DNA polymerase I; DNA p 87.6 1.9 6.5E-05 43.7 9.2 62 88-150 100-182 (592)
34 3d45_A Poly(A)-specific ribonu 86.0 0.7 2.4E-05 45.9 4.9 57 94-150 316-393 (507)
35 2gv9_A DNA polymerase; polymer 85.1 13 0.00045 40.7 14.7 50 95-146 480-551 (1193)
36 1s5j_A DNA polymerase I; repli 83.6 3.1 0.00011 43.8 8.8 124 7-142 189-386 (847)
37 2a1r_A Poly(A)-specific ribonu 82.4 2 7E-05 41.7 6.4 58 94-151 321-399 (430)
38 3qex_A DNA polymerase, GP43; d 79.9 21 0.00073 37.9 13.5 50 95-144 270-337 (903)
39 3k59_A POL II, DNA polymerase 74.9 25 0.00086 36.7 12.2 50 95-145 277-349 (786)
40 1vk0_A Hypothetical protein; h 70.7 31 0.0011 29.8 10.1 70 77-147 117-205 (206)
41 1yt3_A Ribonuclease D, RNAse D 61.1 20 0.00067 33.6 7.4 56 93-150 98-171 (375)
42 2hpi_A DNA polymerase III alph 40.1 2.5 8.4E-05 46.5 -3.0 43 175-217 93-141 (1220)
43 3cym_A Uncharacterized protein 32.7 61 0.0021 31.2 5.9 55 93-150 116-188 (440)
44 2hnh_A DNA polymerase III alph 31.3 5.4 0.00018 42.5 -2.1 41 174-214 80-127 (910)
45 1bgx_T TAQ DNA polymerase; DNA 26.8 91 0.0031 32.7 6.3 57 88-150 364-421 (832)
No 1
>2p1j_A POLIII, DNA polymerase III POLC-type; structural genomics, exonuclease, PSI-2, protein structure initiative; HET: DNA; 2.50A {Thermotoga maritima MSB8}
Probab=99.96 E-value=1.5e-28 Score=214.75 Aligned_cols=138 Identities=24% Similarity=0.319 Sum_probs=122.2
Q ss_pred CCcEEEEEEeecCCCC---ceEEEEEEEEeCCceeeeeeEEEEEcCCCCCCCChHHHHhcCCCHHHHhCCCCHHHHHHHH
Q 048020 7 RSEIVFFDVETTFPIR---HIWEFGAILVCPRKLEELDKYTTLVRPADPSLVSNLCARRNDITPEDVFSAPTFADIADTV 83 (304)
Q Consensus 7 ~~~~VvfDlETTGl~~---~IIEIGAV~v~~g~~~iid~f~~lV~P~~~~~I~~~~~~ltGIT~e~L~~ap~f~eVl~~f 83 (304)
+.+||+||+||||+++ +|||||+|++++| +++++|+++|+|.. +|+++++++||||+++|+++|++.+|+.+|
T Consensus 11 ~~~~v~iD~ETTGl~~~~~~IieIg~v~~~~g--~i~~~f~~lv~P~~--~i~~~~~~i~GIt~~~l~~~~~~~~v~~~~ 86 (186)
T 2p1j_A 11 DATFVVLDFETTGLDPQVDEIIEIGAVKIQGG--QIVDEYHTLIKPSR--EISRKSSEITGITQEMLENKRSIEEVLPEF 86 (186)
T ss_dssp --CEEEEEEEESCSCTTTCCEEEEEEEEEETT--EEEEEEEEECBCSS--CCCHHHHHHHCCCHHHHTTCCBHHHHHHHH
T ss_pred CCCEEEEEEECCCCCCCCCeEEEEEEEEEECC--EEEEEEEEEECcCC--CCCHHHhhhcCCCHHHHhcCCCHHHHHHHH
Confidence 4689999999999864 9999999999976 78899999999999 899999999999999999999999999999
Q ss_pred HHHh-------------------------cCCCCCCceehHHHHHHHhcCCCCCCCHHHHHHHhCCC-CCCCChHHHHHH
Q 048020 84 FDIL-------------------------QAPKPKGTIDSLNLLTERFGRRAGDMKMASLATYFGLG-QQTHRSLDDVLM 137 (304)
Q Consensus 84 ~~fl-------------------------~~~~~~~~IDTl~Lark~l~p~~~~~kL~~Lak~lGI~-~~~HrAL~DA~a 137 (304)
.+|+ ..+...+++||+.++++. + ..++++|..++++||++ .++|||++||++
T Consensus 87 ~~~l~~~~lv~hn~~fD~~~L~~~~~~~g~~~~~~~~iDt~~l~~~~-~-~~~~~~L~~l~~~~gi~~~~~H~Al~Da~~ 164 (186)
T 2p1j_A 87 LGFLEDSIIVAHNANFDYRFLRLWIKKVMGLDWERPYIDTLALAKSL-L-KLRSYSLDSVVEKLGLGPFRHHRALDDARV 164 (186)
T ss_dssp HHHSSSCEEEETTHHHHHHHHHHHHHHHHCCCCCCCEEEHHHHHHHH-T-CCSCCSHHHHHHHTTCCSTTCCHHHHHHHH
T ss_pred HHHHCCCEEEEECcHHHHHHHHHHHHHcCCCCCCCCEEeHHHHHHHH-h-hcCCCCHHHHHHHcCCCCCCCcCHHHHHHH
Confidence 9998 122357899999999954 4 66789999999999997 779999999999
Q ss_pred HHHHHHHHHHHhh
Q 048020 138 NLEVLKYCATVLL 150 (304)
Q Consensus 138 Ta~L~~~ll~~l~ 150 (304)
|++||.+++++..
T Consensus 165 t~~l~~~l~~~~~ 177 (186)
T 2p1j_A 165 TAQVFLRFVEMMK 177 (186)
T ss_dssp HHHHHHHHTTCC-
T ss_pred HHHHHHHHHHHHH
Confidence 9999999887654
No 2
>1w0h_A 3'-5' exonuclease ERI1; nuclease domain, hydrolase; HET: AMP; 1.59A {Homo sapiens} SCOP: c.55.3.5
Probab=99.95 E-value=1.7e-27 Score=209.47 Aligned_cols=144 Identities=23% Similarity=0.279 Sum_probs=121.0
Q ss_pred CCCCcEEEEEEeecCCC-----C--ceEEEEEEEEeCCceeeeeeEEEEEcCCCCCCCChHHHHhcCCCHHHHhCCCCHH
Q 048020 5 QDRSEIVFFDVETTFPI-----R--HIWEFGAILVCPRKLEELDKYTTLVRPADPSLVSNLCARRNDITPEDVFSAPTFA 77 (304)
Q Consensus 5 ~~~~~~VvfDlETTGl~-----~--~IIEIGAV~v~~g~~~iid~f~~lV~P~~~~~I~~~~~~ltGIT~e~L~~ap~f~ 77 (304)
+...+|||||+||||++ . +|||||||+++..+++++++|+++|+|...++|+++++++||||++||+++|+|.
T Consensus 7 ~~~~~~vviD~ETTGl~~~~~~~~~~Iieigav~~~~~~g~i~~~f~~lv~P~~~~~i~~~~~~i~GIt~~~l~~~~~~~ 86 (204)
T 1w0h_A 7 SYYDYICIIDFEATCEEGNPPEFVHEIIEFPVVLLNTHTLEIEDTFQQYVRPEINTQLSDFCISLTGITQDQVDRADTFP 86 (204)
T ss_dssp CSSSEEEECCCEECCCTTCCTTSCCCEEEEEEEEEETTTCSEEEEEEEEBCCSSSCSCCHHHHHHHCCCHHHHHTSBCHH
T ss_pred CCcCEEEEEEEecCCcCCCCCCCCCcEEEEEEEEEECCCCEEeeeeeeEECCCCCCccCHHHHHHhCCCHHHHhCCCCHH
Confidence 34568999999999975 2 9999999999732347889999999999866899999999999999999999999
Q ss_pred HHHHHHHHHh--------------------------------cCCCC---CCceehHHHHHHHhcCC-CCCCCHHHHHHH
Q 048020 78 DIADTVFDIL--------------------------------QAPKP---KGTIDSLNLLTERFGRR-AGDMKMASLATY 121 (304)
Q Consensus 78 eVl~~f~~fl--------------------------------~~~~~---~~~IDTl~Lark~l~p~-~~~~kL~~Lak~ 121 (304)
+|+.+|.+|+ +.+.+ .+++||+.++++.+ +. ..+++|++++++
T Consensus 87 ~v~~~~~~~l~~~~~~~~~~~lv~hn~~fD~~~~L~~~~~~~~~~~p~~~~~~~dt~~l~~~~~-~~~~~~~~L~~l~~~ 165 (204)
T 1w0h_A 87 QVLKKVIDWMKLKELGTKYKYSLLTDGSWDMSKFLNIQCQLSRLKYPPFAKKWINIRKSYGNFY-KVPRSQTKLTIMLEK 165 (204)
T ss_dssp HHHHHHHHHHHHTTBTTTBCEEEEESSTTTTHHHHHHHHHHHTCCCCGGGSEEEEHHHHHHHHH-TCCGGGCSHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCCCcEEEEEECcchHHHHHHHHHHHhCCCCcccccceEEHHHHHHHHh-CCCCccchHHHHHHH
Confidence 9999999885 11111 26899999999554 43 346899999999
Q ss_pred hCCC-C-CCCChHHHHHHHHHHHHHHHHHh
Q 048020 122 FGLG-Q-QTHRSLDDVLMNLEVLKYCATVL 149 (304)
Q Consensus 122 lGI~-~-~~HrAL~DA~aTa~L~~~ll~~l 149 (304)
||++ . .+|||++||++|++||.++++++
T Consensus 166 ~gi~~~~~~H~Al~Da~~ta~l~~~l~~~~ 195 (204)
T 1w0h_A 166 LGMDYDGRPHCGLDDSKNIARIAVRMLQDG 195 (204)
T ss_dssp TTCCCCSCTTCHHHHHHHHHHHHHHHHHTT
T ss_pred cCCCCCCCccCcHHHHHHHHHHHHHHHHCC
Confidence 9997 3 58999999999999999998765
No 3
>2gui_A DNA polymerase III epsilon subunit; DNA polymerase proofreading domain, transferase; HET: DNA U5P; 1.60A {Escherichia coli} SCOP: c.55.3.5 PDB: 1j54_A* 1j53_A* 2ido_A* 2xy8_A*
Probab=99.95 E-value=3.6e-27 Score=206.39 Aligned_cols=138 Identities=22% Similarity=0.267 Sum_probs=117.8
Q ss_pred CCCCcEEEEEEeecCCC-------C-ceEEEEEEEEeCCceeee-eeEEEEEcCCCCCCCChHHHHhcCCCHHHHhCCCC
Q 048020 5 QDRSEIVFFDVETTFPI-------R-HIWEFGAILVCPRKLEEL-DKYTTLVRPADPSLVSNLCARRNDITPEDVFSAPT 75 (304)
Q Consensus 5 ~~~~~~VvfDlETTGl~-------~-~IIEIGAV~v~~g~~~ii-d~f~~lV~P~~~~~I~~~~~~ltGIT~e~L~~ap~ 75 (304)
+|.++||+||+||||++ . +|||||+|++++| +++ ++|+++|+|.. +|+++++++||||++||+++|+
T Consensus 6 ~m~~~~vviD~ETTGl~~~~~~~~~~~Iieig~v~~~~~--~~~~~~f~~lv~P~~--~i~~~~~~i~GIt~~~l~~~~~ 81 (194)
T 2gui_A 6 TAITRQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNR--RLTGNNFHVYLKPDR--LVDPEAFGVHGIADEFLLDKPT 81 (194)
T ss_dssp --CCEEEEEEEEESCCCSSSSTTTTCCEEEEEEEEEETT--EECSCCEEEECCCSS--CCCHHHHHHHCCCHHHHTTSCC
T ss_pred cccCCEEEEEeeCCCCCCcccCCCCCEEEEEEEEEEECC--eEeccEEEEEECcCC--cCCHHHHHhhCcCHHHHhCCCC
Confidence 57789999999999963 2 8999999999976 454 57999999998 9999999999999999999999
Q ss_pred HHHHHHHHHHHh------------------------cCC---CC--CCceehHHHHHHHhcCCCCCCCHHHHHHHhCCC-
Q 048020 76 FADIADTVFDIL------------------------QAP---KP--KGTIDSLNLLTERFGRRAGDMKMASLATYFGLG- 125 (304)
Q Consensus 76 f~eVl~~f~~fl------------------------~~~---~~--~~~IDTl~Lark~l~p~~~~~kL~~Lak~lGI~- 125 (304)
|.+|+.+|.+|+ +.+ +. .+++||+.++++ ++|.. +++|.+++++||++
T Consensus 82 ~~~v~~~~~~~l~~~~lv~hn~~fD~~~L~~~~~~~g~~~p~~~~~~~~iDt~~l~~~-~~p~~-~~~L~~l~~~~gi~~ 159 (194)
T 2gui_A 82 FAEVADEFMDYIRGAELVIHNAAFDIGFMDYEFSLLKRDIPKTNTFCKVTDSLAVARK-MFPGK-RNSLDALCARYEIDN 159 (194)
T ss_dssp HHHHHHHHHHHHTTSEEEETTHHHHHHHHHHHHHHTCSCCCCGGGTSEEEEHHHHHHH-HSTTS-CCSHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHCCCeEEEEchHHhHHHHHHHHHHcCCCCccccccCceeeHHHHHHH-HcCCC-CCCHHHHHHHcCcCC
Confidence 999999999999 122 32 589999999995 56654 57999999999996
Q ss_pred C--CCCChHHHHHHHHHHHHHHHHH
Q 048020 126 Q--QTHRSLDDVLMNLEVLKYCATV 148 (304)
Q Consensus 126 ~--~~HrAL~DA~aTa~L~~~ll~~ 148 (304)
. .+|||++||++|++||.+++++
T Consensus 160 ~~~~~H~Al~Da~~ta~l~~~l~~~ 184 (194)
T 2gui_A 160 SKRTLHGALLDAQILAEVYLAMTGG 184 (194)
T ss_dssp TTCSSCCHHHHHHHHHHHHHHHTC-
T ss_pred CCCCCCChHHHHHHHHHHHHHHHhc
Confidence 3 4899999999999999988754
No 4
>3mxm_B Three prime repair exonuclease 1; RNAse H-like fold, polyproline type II helix, hydrolase-DNA; HET: DNA; 1.75A {Mus musculus} SCOP: c.55.3.5 PDB: 3mxj_B 2ioc_B 3mxi_B* 3b6o_A* 2o4g_A* 3b6p_A* 2o4i_A 2oa8_A
Probab=99.95 E-value=1.8e-27 Score=217.25 Aligned_cols=144 Identities=18% Similarity=0.222 Sum_probs=120.5
Q ss_pred CCCCCcEEEEEEeecCCCC---ceEEEEEEEEeCCce-----------------eeeeeEEEEEcCCCCCCCChHHHHhc
Q 048020 4 TQDRSEIVFFDVETTFPIR---HIWEFGAILVCPRKL-----------------EELDKYTTLVRPADPSLVSNLCARRN 63 (304)
Q Consensus 4 ~~~~~~~VvfDlETTGl~~---~IIEIGAV~v~~g~~-----------------~iid~f~~lV~P~~~~~I~~~~~~lt 63 (304)
..|-.+|||||+||||++. +|||||||+++++.+ +++++|+++|+|.. +|+++++++|
T Consensus 8 ~~~~~~~vv~D~ETTGl~~~~d~IiEIgav~v~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~li~P~~--~i~~~~~~i~ 85 (242)
T 3mxm_B 8 HGHMQTLIFLDLEATGLPSSRPEVTELCLLAVHRRALENTSISQGHPPPVPRPPRVVDKLSLCIAPGK--ACSPGASEIT 85 (242)
T ss_dssp TCCCSEEEEEEEEESSCGGGCCCEEEEEEEEEEHHHHHTSCCCCSSSCCCCCCCSCCEEEEEECCCSS--CCCHHHHHHH
T ss_pred ccccceEEEEEeecCCCCCCCCeeEEEEEEEecCCcccccccccccccccccccchhheeEEEECCCC--CCCHHHHHhc
Confidence 3456789999999999864 999999999986521 56789999999998 9999999999
Q ss_pred CCCHHHHhCC--CCHH-HHHHHHHHHh-----------------------------cCC---CCCCceehHHHHHHHh--
Q 048020 64 DITPEDVFSA--PTFA-DIADTVFDIL-----------------------------QAP---KPKGTIDSLNLLTERF-- 106 (304)
Q Consensus 64 GIT~e~L~~a--p~f~-eVl~~f~~fl-----------------------------~~~---~~~~~IDTl~Lark~l-- 106 (304)
|||++||+++ |+|. +|+++|.+|+ +.+ .+..++||+.++|+++
T Consensus 86 GIt~~~l~~~g~p~~~~ev~~~~~~fl~~~~~~~~lVaHNav~FD~~fL~~~~~r~g~~~~~~~~~~iDtl~l~r~l~~~ 165 (242)
T 3mxm_B 86 GLSKAELEVQGRQRFDDNLAILLRAFLQRQPQPCCLVAHNGDRYDFPLLQTELARLSTPSPLDGTFCVDSIAALKALEQA 165 (242)
T ss_dssp CCCHHHHHHTTCCCSCHHHHHHHHHHHHTSCSSEEEEETTTTTTHHHHHHHHHHTSSSCCTTTTCEEEEHHHHHHHHHHH
T ss_pred CCCHHHHHhcCCCchhHHHHHHHHHHHhcCCCCCEEEEcCChHhhHHHHHHHHHHcCCCCCccCCeEeehHHHHHHHHhh
Confidence 9999999998 8996 9999999998 111 1237899999988533
Q ss_pred -c----CCCCCCCHHHHHHH-hCCC-CCCCChHHHHHHHHHHHHHHHHHh
Q 048020 107 -G----RRAGDMKMASLATY-FGLG-QQTHRSLDDVLMNLEVLKYCATVL 149 (304)
Q Consensus 107 -~----p~~~~~kL~~Lak~-lGI~-~~~HrAL~DA~aTa~L~~~ll~~l 149 (304)
+ +..++++|++|+++ ||++ .++|||++||++|++||+++.+++
T Consensus 166 ~~p~~~~~~~~~~L~~l~~~~~gi~~~~~H~Al~Da~ata~l~~~~~~~~ 215 (242)
T 3mxm_B 166 SSPSGNGSRKSYSLGSIYTRLYWQAPTDSHTAEGDDLTLLSICQWKPQAL 215 (242)
T ss_dssp HCC------CCCSHHHHHHHHHSSCCSSTTSHHHHHHHHHHHHTSSHHHH
T ss_pred cCccccCCCCCcCHHHHHHHHhCCCCCCCcChHHHHHHHHHHHHHHHHHH
Confidence 2 34689999999976 9997 789999999999999999888765
No 5
>1y97_A Three prime repair exonuclease 2; TREX2, hydrolase; 2.50A {Homo sapiens} SCOP: c.55.3.5
Probab=99.94 E-value=1.1e-26 Score=209.44 Aligned_cols=148 Identities=23% Similarity=0.227 Sum_probs=118.3
Q ss_pred CCCCCCCCcEEEEEEeecCCCC---ceEEEEEEEEeCCc--------------eeeeeeEEEEEcCCCCCCCChHHHHhc
Q 048020 1 MGPTQDRSEIVFFDVETTFPIR---HIWEFGAILVCPRK--------------LEELDKYTTLVRPADPSLVSNLCARRN 63 (304)
Q Consensus 1 ~~~~~~~~~~VvfDlETTGl~~---~IIEIGAV~v~~g~--------------~~iid~f~~lV~P~~~~~I~~~~~~lt 63 (304)
|...+...+|||||+||||++. +|||||+|+++++. ++++++|+++|+|.. +|+++++++|
T Consensus 3 ~~~~~~~~~~v~iD~ETTGl~~~~~~IieIg~v~~~~~~~~~~~~~~~~~~~~~~i~~~f~~lv~P~~--~i~~~~~~i~ 80 (238)
T 1y97_A 3 MSEAPRAETFVFLDLEATGLPSVEPEIAELSLFAVHRSSLENPEHDESGALVLPRVLDKLTLCMCPER--PFTAKASEIT 80 (238)
T ss_dssp CCSSCCCSEEEEEEEEESSCGGGCCCEEEEEEEEEEHHHHTSCBC---CCCBCCSSCEEEEEECCCSS--CCCHHHHHHH
T ss_pred CCCCCccCeEEEEEeeCCCcCCCCCcEEEEEEEEecccccccccccccccccccccceeeEEEECCCC--cCCHHHHHHh
Confidence 3444556789999999999854 99999999998541 267789999999999 9999999999
Q ss_pred CCCHHHH--hCCCCH-HHHHHHHHHHh-----------------------------cCCC--CCCceehHHHHHHHhc--
Q 048020 64 DITPEDV--FSAPTF-ADIADTVFDIL-----------------------------QAPK--PKGTIDSLNLLTERFG-- 107 (304)
Q Consensus 64 GIT~e~L--~~ap~f-~eVl~~f~~fl-----------------------------~~~~--~~~~IDTl~Lark~l~-- 107 (304)
|||++|| .++|+| ++++..|.+|+ +..+ ...++||+.++++++.
T Consensus 81 GIt~~~l~~~~~p~f~~~v~~~l~~fl~~~~~~~~lVahN~~~FD~~fL~~~~~~~g~~~~~~~~~iDt~~l~~~~~~~~ 160 (238)
T 1y97_A 81 GLSSEGLARCRKAGFDGAVVRTLQAFLSRQAGPICLVAHNGFDYDFPLLCAELRRLGARLPRDTVCLDTLPALRGLDRAH 160 (238)
T ss_dssp CCCHHHHHHTTCCCSCHHHHHHHHHHHTTSCSSEEEEETTTTTTHHHHHHHHHHHHTCCCCTTCEEEEHHHHHHHHHHHC
T ss_pred CCCHHHHhhcCCCccHHHHHHHHHHHHHhCCCCCEEEecCchhhhHHHHHHHHHHcCCCCCCCCEEEEHHHHHHHHHhcc
Confidence 9999999 578999 48888888877 1122 2568999999996541
Q ss_pred ------CCCCCCCHHHHHH-HhCCC-CCCCChHHHHHHHHHHHHHHHHHhh
Q 048020 108 ------RRAGDMKMASLAT-YFGLG-QQTHRSLDDVLMNLEVLKYCATVLL 150 (304)
Q Consensus 108 ------p~~~~~kL~~Lak-~lGI~-~~~HrAL~DA~aTa~L~~~ll~~l~ 150 (304)
|..++++|+++++ +||++ ..+|||++||++|++||.++.+++.
T Consensus 161 ~p~~~~p~~~~~~L~~l~~~~~gi~~~~~H~Al~Da~~ta~l~~~l~~~~~ 211 (238)
T 1y97_A 161 SHGTRARGRQGYSLGSLFHRYFRAEPSAAHSAEGDVHTLLLIFLHRAAELL 211 (238)
T ss_dssp ----------CCSHHHHHHHHHSSCCC---CHHHHHHHHHHHHHHTHHHHH
T ss_pred CccccCCCCCCCCHHHHHHHHhCCCCccCccHHHHHHHHHHHHHHHHHHHH
Confidence 6678999999999 59997 7899999999999999999988764
No 6
>2xri_A ERI1 exoribonuclease 3; hydrolase, metal binding; 2.15A {Homo sapiens}
Probab=99.94 E-value=3.7e-26 Score=205.46 Aligned_cols=138 Identities=17% Similarity=0.216 Sum_probs=116.3
Q ss_pred CcEEEEEEeecCCCC-----ceEEEEEEEEeCCceeeeeeEEEEEcCCCCCCCChHHHHhcCCCHHHHhCCCCHHHHHHH
Q 048020 8 SEIVFFDVETTFPIR-----HIWEFGAILVCPRKLEELDKYTTLVRPADPSLVSNLCARRNDITPEDVFSAPTFADIADT 82 (304)
Q Consensus 8 ~~~VvfDlETTGl~~-----~IIEIGAV~v~~g~~~iid~f~~lV~P~~~~~I~~~~~~ltGIT~e~L~~ap~f~eVl~~ 82 (304)
.+||+||+||||++. +|||||||+++++.++++++|+++|+|...++|+++++++||||++||+++|+|.+|+++
T Consensus 31 ~~~vviD~ETTGl~~~~d~~~IieIgav~v~~~~~~i~~~f~~lV~P~~~~~i~~~~~~ltGIt~~~v~~a~~~~~v~~~ 110 (224)
T 2xri_A 31 HYFLVLDFEATCDKPQIHPQEIIEFPILKLNGRTMEIESTFHMYVQPVVHPQLTPFCTELTGIIQAMVDGQPSLQQVLER 110 (224)
T ss_dssp SEEEEECCEECCCC-CCSSCCEEEEEEEEEETTTCCEEEEEEEECCCSSSCSCCHHHHHHHCCCHHHHTTCCCHHHHHHH
T ss_pred CeEEEEEEEcCCCCCCCCCcceEEEEEEEEecCCcEEeeeeeeEECCCCCCcCCHHHHHHhCcCHHHHcCCCCHHHHHHH
Confidence 579999999999753 899999999998767889999999999975579999999999999999999999999999
Q ss_pred HHHHh---------------------------------cCCCC---CCcee---hHHHHHHHhcCCCCCCCHHHHHHHhC
Q 048020 83 VFDIL---------------------------------QAPKP---KGTID---SLNLLTERFGRRAGDMKMASLATYFG 123 (304)
Q Consensus 83 f~~fl---------------------------------~~~~~---~~~ID---Tl~Lark~l~p~~~~~kL~~Lak~lG 123 (304)
|.+|+ +.+++ .+++| ++.+++ ... ++++|.+++++||
T Consensus 111 f~~~l~~~~lv~hn~~~~~~t~g~fD~~fll~~~~~~~g~~~p~~~~~~iD~~~~~~~~~-~~~---p~~~L~~l~~~~g 186 (224)
T 2xri_A 111 VDEWMAKEGLLDPNVKSIFVTCGDWDLKVMLPGQCQYLGLPVADYFKQWINLKKAYSFAM-GCW---PKNGLLDMNKGLS 186 (224)
T ss_dssp HHHHHHHTTTTSTTSCEEEEESSSHHHHTHHHHHHHHHTCCCCGGGSCEEEHHHHHHHHH-TSC---CTTTHHHHHHHTT
T ss_pred HHHHHhhcccccCCCceEEEEeChhhHHHHHHHHHHHhCCCCcccccceEeHHHHHHHHh-ccC---CCCCHHHHHHHcC
Confidence 99998 01111 26788 455554 223 3589999999999
Q ss_pred CC--CCCCChHHHHHHHHHHHHHHHHHh
Q 048020 124 LG--QQTHRSLDDVLMNLEVLKYCATVL 149 (304)
Q Consensus 124 I~--~~~HrAL~DA~aTa~L~~~ll~~l 149 (304)
++ +.+|||++||++|++||.+++++.
T Consensus 187 i~~~~~~H~Al~DA~~ta~l~~~l~~~g 214 (224)
T 2xri_A 187 LQHIGRPHSGIDDCKNIANIMKTLAYRG 214 (224)
T ss_dssp CCCCSCTTCHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCCcChHHHHHHHHHHHHHHHHcC
Confidence 97 468999999999999999998764
No 7
>3cg7_A CRN-4, cell death-related nuclease 4; hydrolase, apoptosis, 3'-5' exonuclease, deddh; 2.50A {Caenorhabditis elegans} PDB: 3cm5_A 3cm6_A
Probab=99.93 E-value=7.7e-26 Score=213.43 Aligned_cols=143 Identities=17% Similarity=0.296 Sum_probs=118.3
Q ss_pred CCCcEEEEEEeecCCCC------ceEEEEEEEEeCCceeeee--eEEEEEcCCCCCCCChHHHHhcCCCHHHHhCCCCHH
Q 048020 6 DRSEIVFFDVETTFPIR------HIWEFGAILVCPRKLEELD--KYTTLVRPADPSLVSNLCARRNDITPEDVFSAPTFA 77 (304)
Q Consensus 6 ~~~~~VvfDlETTGl~~------~IIEIGAV~v~~g~~~iid--~f~~lV~P~~~~~I~~~~~~ltGIT~e~L~~ap~f~ 77 (304)
...+|||||+||||++. +|||||||+++..++++++ +|++||||...+.|+++++++||||++||+++|+|.
T Consensus 17 ~~~~~vviD~ETTGl~~~~d~~~eIIEIgaV~vd~~~g~i~~~~~f~~lV~P~~~p~i~~~~~~ltGIt~e~v~~ap~~~ 96 (308)
T 3cg7_A 17 PFDTLLILDFETTSDAANQDYPCEVIQFAIVAYDVPNDKIREDISFNKYVKPVLNRTLTKNCVDFTGIPQRSIDTADTFD 96 (308)
T ss_dssp CCSEEEEEEEEECCBTTBCSCCCCEEEEEEEEEETTTTEEEEEEEEEEECBCSSBCSCCHHHHHHHCCCHHHHHTSCBHH
T ss_pred CCCeEEEEEeecCCCCCCCCCCCCeEEEEEEEEEcCCCEEeeccceeeEECCCCCCCCCHHHHHHcCCCHHHHhcCCCHH
Confidence 34579999999999743 8999999999642347777 999999999832399999999999999999999999
Q ss_pred HHHHHHHHHh-------------------------------cCCCC---CCceehHHHHHHHhcCCCC------CCCHHH
Q 048020 78 DIADTVFDIL-------------------------------QAPKP---KGTIDSLNLLTERFGRRAG------DMKMAS 117 (304)
Q Consensus 78 eVl~~f~~fl-------------------------------~~~~~---~~~IDTl~Lark~l~p~~~------~~kL~~ 117 (304)
+|+.+|.+|+ +..++ .+|+||+.++++.+ +... +++|.+
T Consensus 97 evl~~f~~~l~~~~lvahn~~lv~~g~fD~~~fL~~~~~~~g~~~p~~~~~~iDt~~l~~~~~-~~~~~~~~~~~~~L~~ 175 (308)
T 3cg7_A 97 VVYEQFQQWLITLGLEEGKFAFVCDSRQDLWRIAQYQMKLSNIQMPAFFRQYINLYKIFTNEM-DRMGPKELSATTNIGK 175 (308)
T ss_dssp HHHHHHHHHHHHHCCCTTSEEEEESSSHHHHTHHHHHHHHTTCCCCGGGSEEEEHHHHHHHHH-HHHCCCCCCCCSHHHH
T ss_pred HHHHHHHHHHHhCCcCCcceEEeccCcccHHHHHHHHHHHcCCCCchhhcceeeHHHHHHHHh-ccccccccccCcCHHH
Confidence 9999999988 01111 35899999998543 3222 688999
Q ss_pred HHHHhCCC--CCCCChHHHHHHHHHHHHHHHHHh
Q 048020 118 LATYFGLG--QQTHRSLDDVLMNLEVLKYCATVL 149 (304)
Q Consensus 118 Lak~lGI~--~~~HrAL~DA~aTa~L~~~ll~~l 149 (304)
++++||++ ..+|||++||++|++||.+++++.
T Consensus 176 l~~~~gi~~~~~~HrAl~DA~ata~l~~~l~~~~ 209 (308)
T 3cg7_A 176 MNEYYDLPTIGRAHDAMDDCLNIATILQRMINMG 209 (308)
T ss_dssp HHHHTTCCCCSCTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHcCCCCCCCCcCHHHHHHHHHHHHHHHHHcC
Confidence 99999997 456999999999999999998765
No 8
>1zbh_A 3'-5' exonuclease ERI1; histone mRNA 3'-END-specific recognition, structures of 3'- exonuclease and ITS RNA complex, hydrolase/RNA complex; HET: AMP; 3.00A {Homo sapiens}
Probab=99.93 E-value=1.3e-25 Score=210.52 Aligned_cols=144 Identities=22% Similarity=0.251 Sum_probs=120.8
Q ss_pred CCCcEEEEEEeecCCC------C-ceEEEEEEEEeCCceeeeeeEEEEEcCCCCCCCChHHHHhcCCCHHHHhCCCCHHH
Q 048020 6 DRSEIVFFDVETTFPI------R-HIWEFGAILVCPRKLEELDKYTTLVRPADPSLVSNLCARRNDITPEDVFSAPTFAD 78 (304)
Q Consensus 6 ~~~~~VvfDlETTGl~------~-~IIEIGAV~v~~g~~~iid~f~~lV~P~~~~~I~~~~~~ltGIT~e~L~~ap~f~e 78 (304)
....|||||+||||++ . +|||||||+++++.++++++|+++|+|...++|+++++++||||++||+++|+|.+
T Consensus 76 ~~~~~vviD~ETTGl~~~~~~~~~~IIeIgaV~v~~~~g~i~~~f~~lV~P~~~~~i~~~~~~ihGIt~e~v~~ap~~~e 155 (299)
T 1zbh_A 76 YYDYICIIDFEATCEEGNPPEFVHEIIEFPVVLLNTHTLEIEDTFQQYVRPEINTQLSDFCISLTGITQDQVDRADTFPQ 155 (299)
T ss_dssp SCSEEEEECCEECCCTTCCTTCCCCEEEEEEEEEETTTCCEEEEEEEEBCCSSSCSCCHHHHHHHCCCHHHHHTSBCHHH
T ss_pred CCceEEEEEeecccCCCCCCCCCCceEEEEEEEEECCCCeEeeeeeeeecCCCCCCCCHHHHHHhCCCHHHHhcCCCHHH
Confidence 3468999999999984 2 99999999999765688999999999998668999999999999999999999999
Q ss_pred HHHHHHHHh--------------------------------cCC---CCCCceehHHHHHHHhcCCCCCCCHHHHHHHhC
Q 048020 79 IADTVFDIL--------------------------------QAP---KPKGTIDSLNLLTERFGRRAGDMKMASLATYFG 123 (304)
Q Consensus 79 Vl~~f~~fl--------------------------------~~~---~~~~~IDTl~Lark~l~p~~~~~kL~~Lak~lG 123 (304)
|+.+|.+|+ +.+ +..+|+|+..++++.+......++|.+++++||
T Consensus 156 vl~~f~~~l~~~~~~~~~~~lVahn~~fD~~~fL~~~~~~~g~~~p~~~~~~iDt~~l~~~~~~~~~~~~~L~~l~~~~g 235 (299)
T 1zbh_A 156 VLKKVIDLMKLKELGTKYKYSLLTDGSWDMSKFLNIQCQLSRLKYPPFAKKWINIRKSYGNFYKVPRSQTKLTIMLEKLG 235 (299)
T ss_dssp HHHHHHHHHHHTTBTTTBCEEEEESSSHHHHTHHHHHHHHTTBCCCGGGSEEEEHHHHHHHHHTCCGGGCSHHHHHHHTT
T ss_pred HHHHHHHHHhhcccCCCCcEEEEEeCHHHHHHHHHHHHHHcCCCCCcccchHHHHHHHHHHHhCCCCCCccHHHHHHHcC
Confidence 999998875 011 123689998888754321112489999999999
Q ss_pred CC-C-CCCChHHHHHHHHHHHHHHHHHh
Q 048020 124 LG-Q-QTHRSLDDVLMNLEVLKYCATVL 149 (304)
Q Consensus 124 I~-~-~~HrAL~DA~aTa~L~~~ll~~l 149 (304)
++ . .+|||++||++|++||.+++++.
T Consensus 236 i~~~g~~H~Al~DA~ata~l~~~l~~~~ 263 (299)
T 1zbh_A 236 MDYDGRPNCGLDDSKNIARIAVRMLQDG 263 (299)
T ss_dssp CCCCSCTTCHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHhC
Confidence 97 3 58999999999999999998875
No 9
>3u3y_B Three prime repair exonuclease 1; RNAse H fold, 3' exonuclease, homodimer, hydrolase-DNA compl; HET: BU1; 2.28A {Mus musculus} PDB: 3u6f_B*
Probab=99.93 E-value=7.3e-26 Score=214.58 Aligned_cols=143 Identities=18% Similarity=0.232 Sum_probs=119.2
Q ss_pred CCCCcEEEEEEeecCCCC---ceEEEEEEEEeCCce-----------------eeeeeEEEEEcCCCCCCCChHHHHhcC
Q 048020 5 QDRSEIVFFDVETTFPIR---HIWEFGAILVCPRKL-----------------EELDKYTTLVRPADPSLVSNLCARRND 64 (304)
Q Consensus 5 ~~~~~~VvfDlETTGl~~---~IIEIGAV~v~~g~~-----------------~iid~f~~lV~P~~~~~I~~~~~~ltG 64 (304)
.+-.+|||||+||||++. +|||||+|+++++.. +++++|+++|||+. +|+++++++||
T Consensus 9 ~~~~tfVv~DlETTGL~~~~d~IIEIgaV~v~~~~l~~~~~~~g~~~~~~~~~~v~~~~~~lI~P~~--~I~~~a~~IhG 86 (314)
T 3u3y_B 9 GHMQTLIFLDLEATGLPSSRPEVTELCLLAVHRRALENTSISQGHPPPVPRPPRVVDKLSLCIAPGK--ACSPGASEITG 86 (314)
T ss_dssp CCCSEEEEEEEEESSCGGGCCCEEEEEEEEEEHHHHHC--CCCSSSCCCCCCCSSCEEEEEECBCSS--CCCHHHHHHHS
T ss_pred cccCCEEEEEEECCCCCCCCCeEEEEEEEEEECCccccccccccccccccccceeeeeEEEEECCCC--CCCHHHHHhcC
Confidence 356689999999999864 999999999986521 36789999999999 99999999999
Q ss_pred CCHHHHhCC--CCH-HHHHHHHHHHh-----------------------------cCC---CCCCceehHHHHHHH---h
Q 048020 65 ITPEDVFSA--PTF-ADIADTVFDIL-----------------------------QAP---KPKGTIDSLNLLTER---F 106 (304)
Q Consensus 65 IT~e~L~~a--p~f-~eVl~~f~~fl-----------------------------~~~---~~~~~IDTl~Lark~---l 106 (304)
||++||+++ |+| ++++++|.+|+ +.. ....++||+.+++++ +
T Consensus 87 IT~e~l~~aG~P~f~~ev~~~l~~fL~~~~~~~vLVAHNga~FD~~FL~~el~r~Gl~~~~~~~~~iDTL~l~r~L~r~~ 166 (314)
T 3u3y_B 87 LSKAELEVQGRQRFDDNLAILLRAFLQRQPQPCCLVAHNGDRYDFPLLQTELARLSTPSPLDGTFCVDSIAALKALEQAS 166 (314)
T ss_dssp CCHHHHHHTTCCBSCHHHHHHHHHHHHTSCSSEEEEETTTTTTHHHHHHHHHHTSSSCCTTTTCEEEEHHHHHHHHHTTC
T ss_pred CCHHHHHhCCCCCcHHHHHHHHHHHHhcCCCCcEEEEeCcHHHHHHHHHHHHHHcCCCCCCCCceEEeHHHHHHHHHHHh
Confidence 999999999 899 79999999988 111 124589999866632 2
Q ss_pred cCC----CCCCCHHHHHHH-hCCC-CCCCChHHHHHHHHHHHHHHHHHh
Q 048020 107 GRR----AGDMKMASLATY-FGLG-QQTHRSLDDVLMNLEVLKYCATVL 149 (304)
Q Consensus 107 ~p~----~~~~kL~~Lak~-lGI~-~~~HrAL~DA~aTa~L~~~ll~~l 149 (304)
+|. .++++|++|+++ ||++ .++|||++||++|++||+++.+++
T Consensus 167 ~P~~~~~~~~~~L~~L~~~l~gi~~~~aHrAl~DA~ata~lf~~l~~~~ 215 (314)
T 3u3y_B 167 SPSGNGSRKSYSLGSIYTRLYWQAPTDSHTAEGHVLTLLSICQWKPQAL 215 (314)
T ss_dssp -------CCCCSHHHHHHHHHSSCCSCSSSHHHHHHHHHHHHHSSHHHH
T ss_pred CccccccCCCCCHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 343 478999999999 9997 789999999999999999988766
No 10
>2f96_A Ribonuclease T; RNAse, RNT, RNAse T, tRNA hydrolase, SAD, PS protein structure initiative, midwest center for structural genomics; 2.09A {Pseudomonas aeruginosa} SCOP: c.55.3.5
Probab=99.93 E-value=3.3e-25 Score=198.68 Aligned_cols=140 Identities=16% Similarity=0.061 Sum_probs=117.9
Q ss_pred CCcEEEEEEeecCCCC---ceEEEEEEEEe---CCceeeeeeEEEEEcCCCCCCCChHHHHhcCCCHH-HHhCCCCHHHH
Q 048020 7 RSEIVFFDVETTFPIR---HIWEFGAILVC---PRKLEELDKYTTLVRPADPSLVSNLCARRNDITPE-DVFSAPTFADI 79 (304)
Q Consensus 7 ~~~~VvfDlETTGl~~---~IIEIGAV~v~---~g~~~iid~f~~lV~P~~~~~I~~~~~~ltGIT~e-~L~~ap~f~eV 79 (304)
+.+||+||+||||+++ +|||||+|+++ +|...++++|+++|+|....+|+++++++||||++ ++++++++.++
T Consensus 28 ~~~~vviD~ETTGl~~~~~~IieIg~v~~~~~~~g~i~~~~~f~~lV~P~~~~~i~~~~~~ihGIt~e~~v~~~~~~~~v 107 (224)
T 2f96_A 28 GYLPVVVDVETGGFNSATDALLEIAATTVGMDEKGFLFPEHTYFFRIEPFEGANIEPAALEFTGIKLDHPLRMAVQEEAA 107 (224)
T ss_dssp TEEEEEEEEEESSSCTTTBCEEEEEEEEEEECTTSCEEEEEEEEEEBCCCTTCBCCHHHHHHHTCCTTCTTCCCBCHHHH
T ss_pred CCcEEEEEeeCCCCCCCCCeeEEEEEEEEEEcCCCcccccceEEEEECCCCCCCCCHHHHHHhCCCHHHHHhcCCCHHHH
Confidence 4579999999999864 99999999998 56444678999999995323899999999999997 59999999999
Q ss_pred HHHHHHHh---------------------------------cC---CC-CCCceehHHHHHHHhcCCCCCCCHHHHHHHh
Q 048020 80 ADTVFDIL---------------------------------QA---PK-PKGTIDSLNLLTERFGRRAGDMKMASLATYF 122 (304)
Q Consensus 80 l~~f~~fl---------------------------------~~---~~-~~~~IDTl~Lark~l~p~~~~~kL~~Lak~l 122 (304)
+.+|.+|+ +. ++ ..+++||+.++++. +| +++|..++++|
T Consensus 108 ~~~~~~~l~~~~~~~~~~~~~lV~hn~~FD~~fL~~~~~~~g~~~~p~~~~~~iDt~~l~~~~-~~---~~~L~~l~~~~ 183 (224)
T 2f96_A 108 LTEIFRGIRKALKANGCKRAILVGHNSSFDLGFLNAAVARTGIKRNPFHPFSSFDTATLAGLA-YG---QTVLAKACQAA 183 (224)
T ss_dssp HHHHHHHHHHHHHHTTCSEEEEEETTHHHHHHHHHHHHHHHTCCCCCEEEEEEEEHHHHHHHH-HS---CCSHHHHHHHT
T ss_pred HHHHHHHHHHHhhhcccCCCEEEEeChhhhHHHHHHHHHHcCCCcCCccccceeeHHHHHHHH-cC---CCCHHHHHHHc
Confidence 99988773 11 22 35789999999954 44 47999999999
Q ss_pred CCC---CCCCChHHHHHHHHHHHHHHHHHhh
Q 048020 123 GLG---QQTHRSLDDVLMNLEVLKYCATVLL 150 (304)
Q Consensus 123 GI~---~~~HrAL~DA~aTa~L~~~ll~~l~ 150 (304)
|++ ..+|||++||++|++||.++++++.
T Consensus 184 gi~~~~~~~H~Al~Da~~ta~l~~~l~~~~~ 214 (224)
T 2f96_A 184 GMEFDNREAHSARYDTEKTAELFCGIVNRWK 214 (224)
T ss_dssp TCCCCTTSCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcCCCCCCChHHHHHHHHHHHHHHHHHHH
Confidence 996 3699999999999999999998875
No 11
>1wlj_A Interferon stimulated gene 20KDA; exoribonuclease, hydrolase; HET: U5P; 1.90A {Homo sapiens} SCOP: c.55.3.5
Probab=99.92 E-value=3e-25 Score=194.47 Aligned_cols=137 Identities=17% Similarity=0.203 Sum_probs=109.5
Q ss_pred CCcEEEEEEeecCCCC----ceEEEEEEEEeCCceeeeeeEEEEEcCCCCCCCChHHHHhcCCCHHHHhCCCCHHHHHHH
Q 048020 7 RSEIVFFDVETTFPIR----HIWEFGAILVCPRKLEELDKYTTLVRPADPSLVSNLCARRNDITPEDVFSAPTFADIADT 82 (304)
Q Consensus 7 ~~~~VvfDlETTGl~~----~IIEIGAV~v~~g~~~iid~f~~lV~P~~~~~I~~~~~~ltGIT~e~L~~ap~f~eVl~~ 82 (304)
..+||+||+||||+++ +|||||+|..+ | +++ |++||+|.. +|+++++++||||++||+++|+|.+|+++
T Consensus 4 ~~~~vviD~ETTGl~~~~~~~iiei~~v~~~-g--~~i--~~~lV~P~~--~i~~~~~~i~GIt~~~l~~a~~~~~v~~~ 76 (189)
T 1wlj_A 4 SREVVAMDCEMVGLGPHRESGLARCSLVNVH-G--AVL--YDKFIRPEG--EITDYRTRVSGVTPQHMVGATPFAVARLE 76 (189)
T ss_dssp --CEEEEEEEEEEETTTTEEEEEEEEEECTT-C--CEE--EEEEEECSS--CEEECCHHHHCCCHHHHTTCEEHHHHHHH
T ss_pred CCeEEEEEeECcCcCCCCCceEEEEEEEeCC-C--CEE--EeeEecCCC--CCCccccCCCCCCHHHHcCCCCHHHHHHH
Confidence 4589999999999754 68899998643 2 454 999999999 89999999999999999999999999999
Q ss_pred HHHHh-----------------cCCC-CCCceehHHHHH--HH-hcCCCCCCCHHHHHHH-hCCC-CC---CCChHHHHH
Q 048020 83 VFDIL-----------------QAPK-PKGTIDSLNLLT--ER-FGRRAGDMKMASLATY-FGLG-QQ---THRSLDDVL 136 (304)
Q Consensus 83 f~~fl-----------------~~~~-~~~~IDTl~Lar--k~-l~p~~~~~kL~~Lak~-lGI~-~~---~HrAL~DA~ 136 (304)
|.+|+ ...+ ...++||+.+++ +. ..|...+++|..|+++ ||++ .. +|||++||+
T Consensus 77 ~~~~l~~~~lV~hn~~fD~~~L~~~~~~~~~idt~~~~~~~~~~~~p~~~~~~L~~l~~~~lgi~~~~~~~~H~Al~Da~ 156 (189)
T 1wlj_A 77 ILQLLKGKLVVGHDLKHDFQALKEDMSGYTIYDTSTDRLLWREAKLDHCRRVSLRVLSERLLHKSIQNSLLGHSSVEDAR 156 (189)
T ss_dssp HHHHHTTSEEEESSHHHHHHHTTCCCTTCEEEEGGGCHHHHHHHTC-----CCHHHHHHHHTCCCCSCCTTCCCHHHHHH
T ss_pred HHHHHCCCEEEECCcHHHHHHHHHhCCCCceechHhhhhhhhcccCCCCCCccHHHHHHHHcCCCCCCCCCCcCcHHHHH
Confidence 99999 1111 246999988643 21 3455678999999998 7996 33 999999999
Q ss_pred HHHHHHHHHHHHhh
Q 048020 137 MNLEVLKYCATVLL 150 (304)
Q Consensus 137 aTa~L~~~ll~~l~ 150 (304)
+|++||+++++++.
T Consensus 157 ata~l~~~l~~~~~ 170 (189)
T 1wlj_A 157 ATMELYQISQRIRA 170 (189)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999998774
No 12
>3v9w_A Ribonuclease T; DEDD nucleases family, EXO-nucleases, hydrolase-DNA complex; HET: DNA; 1.70A {Escherichia coli} PDB: 3ngy_A 3v9u_A* 3ngz_A* 3va3_A* 3v9z_A* 3nh0_A 3nh2_A 3nh1_A* 3v9s_A* 3v9x_A* 3va0_A* 2is3_A
Probab=99.92 E-value=4.9e-24 Score=192.08 Aligned_cols=140 Identities=19% Similarity=0.077 Sum_probs=119.4
Q ss_pred CCcEEEEEEeecCCCC---ceEEEEEEEEe---CCceeeeeeEEEEEcCCCCCCCChHHHHhcCCCHH-HHhCCCCHHHH
Q 048020 7 RSEIVFFDVETTFPIR---HIWEFGAILVC---PRKLEELDKYTTLVRPADPSLVSNLCARRNDITPE-DVFSAPTFADI 79 (304)
Q Consensus 7 ~~~~VvfDlETTGl~~---~IIEIGAV~v~---~g~~~iid~f~~lV~P~~~~~I~~~~~~ltGIT~e-~L~~ap~f~eV 79 (304)
...||+||+||||+++ +|||||+|+++ +|...+.++|+.+|+|....+|+++++++||||++ ++++++++.++
T Consensus 36 ~~~~vviD~ETTGl~~~~~~IieIgav~~~~~~~g~i~~~~~f~~~v~P~~~~~i~~~~~~i~GIt~e~~v~~~~~~~~v 115 (235)
T 3v9w_A 36 GFYPVVIDVETAGFNAKTDALLEIAAITLKMDEQGWLMPDTTLHFHVEPFVGANLQPEALAFNGIDPNDPDRGAVSGYEA 115 (235)
T ss_dssp TEEEEEEEEEESSSCTTTBCEEEEEEEEEEECTTSCEEEEEEEEEEBCCCTTCBCCHHHHHHHCCCTTCGGGCCBCHHHH
T ss_pred CCcEEEEEEeCCCCCCCCCeEEEEEEEEEEEcCCCcccccceEEEEECCCCCCCCCHHHHHHhCCCHHHHHhcCCCHHHH
Confidence 4579999999999864 99999999997 66544689999999995434899999999999999 99999999999
Q ss_pred HHHHHHHh---------------------------------cC---CC-CCCceehHHHHHHHhcCCCCCCCHHHHHHHh
Q 048020 80 ADTVFDIL---------------------------------QA---PK-PKGTIDSLNLLTERFGRRAGDMKMASLATYF 122 (304)
Q Consensus 80 l~~f~~fl---------------------------------~~---~~-~~~~IDTl~Lark~l~p~~~~~kL~~Lak~l 122 (304)
+.+|.+|+ +. ++ ...++||+.+++. ++| +++|+.|+++|
T Consensus 116 l~~~~~~l~~~~~~~~~~~~~lVahN~~fD~~~L~~~~~~~g~~~~p~~~~~~~Dt~~la~~-~~p---~~~L~~l~~~~ 191 (235)
T 3v9w_A 116 LHEIFKVVRKGIKASGCNRAIMVAHNANFDHSFMMAAAERASLKRNPFHPFATFDTAALAGL-ALG---QTVLSKACQTA 191 (235)
T ss_dssp HHHHHHHHHHHHTTTTCCEEEEEETTTHHHHHHHHHHHHHTTCCCCCEEEEEEEEHHHHHHH-HHS---CCSHHHHHHHH
T ss_pred HHHHHHHHHHHhhhccCCCcEEEEeChHHHHHHHHHHHHHcCCCCCCCCCCcEEEhHHHHHH-HhC---CCCHHHHHHHc
Confidence 99998873 11 11 1468999999995 455 47999999999
Q ss_pred CCC---CCCCChHHHHHHHHHHHHHHHHHhh
Q 048020 123 GLG---QQTHRSLDDVLMNLEVLKYCATVLL 150 (304)
Q Consensus 123 GI~---~~~HrAL~DA~aTa~L~~~ll~~l~ 150 (304)
|++ ..+|+|++||.+|++||.+|++++.
T Consensus 192 gi~~~~~~~H~Al~DA~~ta~l~~~l~~~l~ 222 (235)
T 3v9w_A 192 GMDFDSTQAHSALYDTERTAVLFCEIVNRWK 222 (235)
T ss_dssp TCCCCTTTTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCcChHHHHHHHHHHHHHHHHHHH
Confidence 996 2699999999999999999999885
No 13
>1zbu_A ERI-1 homolog, 3'-5' exonuclease ERI1; hydrolase; HET: AMP; 3.00A {Homo sapiens}
Probab=99.92 E-value=7.9e-25 Score=210.12 Aligned_cols=143 Identities=22% Similarity=0.269 Sum_probs=120.0
Q ss_pred CCcEEEEEEeecCCC----C---ceEEEEEEEEeCCceeeeeeEEEEEcCCCCCCCChHHHHhcCCCHHHHhCCCCHHHH
Q 048020 7 RSEIVFFDVETTFPI----R---HIWEFGAILVCPRKLEELDKYTTLVRPADPSLVSNLCARRNDITPEDVFSAPTFADI 79 (304)
Q Consensus 7 ~~~~VvfDlETTGl~----~---~IIEIGAV~v~~g~~~iid~f~~lV~P~~~~~I~~~~~~ltGIT~e~L~~ap~f~eV 79 (304)
...|||||+||||++ . +|||||||+++++.++++++|++||+|...++|+++++++||||++||+++|+|.+|
T Consensus 127 ~~~~vviD~ETTGl~~~~~~~~deIIEIgaV~vd~~~g~i~~~f~~lVkP~~~~~I~~~~t~ihGIT~e~v~~ap~~~eV 206 (349)
T 1zbu_A 127 YDYICIIDFEATCEEGNPPEFVHEIIEFPVVLLNTHTLEIEDTFQQYVRPEINTQLSDFCISLTGITQDQVDRADTFPQV 206 (349)
T ss_dssp CSEEEECCCEECCCTTCCTTCCCCEEECCEEEEETTTTEEEEEECCBEECSSSCSCCHHHHHHHCCCHHHHHTSEEHHHH
T ss_pred CCeEEEEEEecCCCCCcCCCCCCeEEEEEEEEEECCCceEeEEEEEEECCCCCCCCCHHHHHHhCCCHHHHhCCCCHHHH
Confidence 468999999999983 2 999999999996556889999999999986689999999999999999999999999
Q ss_pred HHHHHHHh-c-------------------------------CC---CCCCceehHHHHHHHhcCCCCCCCHHHHHHHhCC
Q 048020 80 ADTVFDIL-Q-------------------------------AP---KPKGTIDSLNLLTERFGRRAGDMKMASLATYFGL 124 (304)
Q Consensus 80 l~~f~~fl-~-------------------------------~~---~~~~~IDTl~Lark~l~p~~~~~kL~~Lak~lGI 124 (304)
+.+|.+|+ . .+ +..+|+|+..++++.+......++|.+|+++||+
T Consensus 207 l~~f~~~l~~~~~~~~~~~lVaHNa~FD~~~fL~~~~~~~g~~~p~~~~~~iDt~~l~~~~~~~~~~~~~L~~l~~~~gi 286 (349)
T 1zbu_A 207 LKKVIDLMKLKELGTKYKYSLLTDGSWDMSKFLNIQCQLSRLKYPPFAKKWINIRKSYGNFYKVPRSQTKLTIMLEKLGM 286 (349)
T ss_dssp HHHHHHHHHHTTBTTTBCEEEEESSSHHHHTHHHHHHHHTTBCCCGGGSEEEEHHHHHHHHHTCCGGGGSHHHHHHHTTC
T ss_pred HHHHHHHHhcccccCCCcEEEEECcHhhHHHHHHHHHHHhCCCCccccchHHHHHHHHHHHhcCCCCCCCHHHHHHHcCC
Confidence 99988876 0 11 1236899998887543211123899999999999
Q ss_pred C-C-CCCChHHHHHHHHHHHHHHHHHh
Q 048020 125 G-Q-QTHRSLDDVLMNLEVLKYCATVL 149 (304)
Q Consensus 125 ~-~-~~HrAL~DA~aTa~L~~~ll~~l 149 (304)
+ . .+|||++||++|++||.+++++.
T Consensus 287 ~~~g~~HrAl~DA~ata~ll~~ll~~~ 313 (349)
T 1zbu_A 287 DYDGRPHCGLDDSKNIARIAVRMLQDG 313 (349)
T ss_dssp CCCSCTTCHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 7 3 58999999999999999998875
No 14
>2igi_A Oligoribonuclease; RNAse, exoribonuclease, exonuclease, hydrolase, mRNA decay; 1.70A {Escherichia coli} SCOP: c.55.3.5 PDB: 1yta_A 1j9a_A
Probab=99.91 E-value=2.3e-24 Score=186.41 Aligned_cols=133 Identities=19% Similarity=0.222 Sum_probs=103.5
Q ss_pred CCCcEEEEEEeecCCCC---ceEEEEEEEEeCCceeeee-eEEEEEcCCCC--CCCChHHH---HhcCCCHHHHhCCCCH
Q 048020 6 DRSEIVFFDVETTFPIR---HIWEFGAILVCPRKLEELD-KYTTLVRPADP--SLVSNLCA---RRNDITPEDVFSAPTF 76 (304)
Q Consensus 6 ~~~~~VvfDlETTGl~~---~IIEIGAV~v~~g~~~iid-~f~~lV~P~~~--~~I~~~~~---~ltGIT~e~L~~ap~f 76 (304)
..++||+||+||||+++ +|||||+|+++++ +++++ .|+++|+|... ..++++++ ++||||++||+++|++
T Consensus 3 ~~~~~v~iD~ETTGl~~~~~~IieIg~v~~~~~-~~~~~~~~~~lv~P~~~i~~~i~~~~~~~~~itGIt~~~l~~~~~~ 81 (180)
T 2igi_A 3 NENNLIWIDLEMTGLDPERDRIIEIATLVTDAN-LNILAEGPTIAVHQSDEQLALMDDWNVRTHTASGLVERVKASTMGD 81 (180)
T ss_dssp GGGCEEEEEEEESSSCTTTCCEEEEEEEEECTT-CCEEEEEEEEECCCCHHHHTTCCHHHHHHHHHTTHHHHHHHCCCCH
T ss_pred CCCcEEEEEeeCCCCCCCCCceEEEEEEEEcCC-CcEecCCcceEECCCHHHhhcCCHHHHHHHHHcCCCHHHHhcCCCH
Confidence 45689999999999865 9999999988753 34555 59999999871 12456664 4599999999999999
Q ss_pred HHHHHHHHHHhc------------------------------CCCCCCcee--hH-HHHHHHhcCCCCCCCHHHHHHHhC
Q 048020 77 ADIADTVFDILQ------------------------------APKPKGTID--SL-NLLTERFGRRAGDMKMASLATYFG 123 (304)
Q Consensus 77 ~eVl~~f~~fl~------------------------------~~~~~~~ID--Tl-~Lark~l~p~~~~~kL~~Lak~lG 123 (304)
.+|+++|.+|+. .++..+++| |+ .++++ ++|... .|
T Consensus 82 ~~v~~~~~~~l~~~~~~~~~~lv~hn~~fD~~fL~~~~~~~~~~~~~~~~d~~tl~~l~~~-~~p~~~----------~~ 150 (180)
T 2igi_A 82 REAELATLEFLKQWVPAGKSPICGNSIGQDRRFLFKYMPELEAYFHYRYLDVSTLKELARR-WKPEIL----------DG 150 (180)
T ss_dssp HHHHHHHHHHHTTTSCTTTSCEEESSHHHHHHHHHHHCHHHHHHSCSCEEETHHHHHHHHH-HCGGGG----------GG
T ss_pred HHHHHHHHHHHHHhCCCCCceEEecCHHHHHHHHHHHHHHhccCCCcceeeHHHHHHHHHH-hChHhh----------hC
Confidence 999999999871 123456778 77 36763 455321 36
Q ss_pred CC-CCCCChHHHHHHHHHHHHHHHHHhh
Q 048020 124 LG-QQTHRSLDDVLMNLEVLKYCATVLL 150 (304)
Q Consensus 124 I~-~~~HrAL~DA~aTa~L~~~ll~~l~ 150 (304)
++ .++|||++||++|+++|+++++++.
T Consensus 151 i~~~~~H~Al~Da~ata~l~~~~~~~~~ 178 (180)
T 2igi_A 151 FTKQGTHQAMDDIRESVAELAYYREHFI 178 (180)
T ss_dssp SCCCCCCCHHHHHHHHHHHHHHHHHHTB
T ss_pred CCCcCCcCcHHHHHHHHHHHHHHHHHhh
Confidence 75 7899999999999999999998764
No 15
>2qxf_A Exodeoxyribonuclease I; alpha-beta domain, DNAQ superfamily, SH3-like domain, produc structure, DNA damage, DNA repair, exonuclease; HET: TMP; 1.50A {Escherichia coli} SCOP: c.55.3.5 PDB: 1fxx_A* 3c94_A 3c95_A 3hl8_A* 3hp9_A*
Probab=99.89 E-value=4.2e-23 Score=205.67 Aligned_cols=140 Identities=19% Similarity=0.243 Sum_probs=113.8
Q ss_pred CCCcEEEEEEeecCCCC---ceEEEEEEEEeCCceeeeee-EEEEEcCCCCCCC--ChHHHHhcCCCHHHHhCCCCH-HH
Q 048020 6 DRSEIVFFDVETTFPIR---HIWEFGAILVCPRKLEELDK-YTTLVRPADPSLV--SNLCARRNDITPEDVFSAPTF-AD 78 (304)
Q Consensus 6 ~~~~~VvfDlETTGl~~---~IIEIGAV~v~~g~~~iid~-f~~lV~P~~~~~I--~~~~~~ltGIT~e~L~~ap~f-~e 78 (304)
...+|||||+||||+++ +|||||+|+++.+ +.++++ |+++|+|.. ++ ++.++++||||++||.+++.+ .+
T Consensus 7 ~~~~~vv~DlETTGl~p~~d~IIEIgaV~vd~~-g~ii~~~f~~lVkP~~--~ilp~p~a~~IhGIT~e~l~~ap~~~~e 83 (482)
T 2qxf_A 7 QQSTFLFHDYETFGTHPALDRPAQFAAIRTDSE-FNVIGEPEVFYCKPAD--DYLPQPGAVLITGITPQEARAKGENEAA 83 (482)
T ss_dssp CCCEEEEEEEEESSSCTTTSCEEEEEEEEECTT-SCBCSCCEEEEBCCCT--TCCCCHHHHHHHCCCHHHHHHHCBCHHH
T ss_pred CCCCEEEEEEECCCCCCCCCeEEEEEEEEEECC-CeEEeeeeEEEECCCC--CCCCCHHHHHHhCCCHHHHhcCCCCHHH
Confidence 35589999999999865 9999999999842 256676 999999998 66 789999999999999987655 99
Q ss_pred HHHHHHHHh----------------------------cCCCC------CCceehHHHHHHHh--c------C----CCCC
Q 048020 79 IADTVFDIL----------------------------QAPKP------KGTIDSLNLLTERF--G------R----RAGD 112 (304)
Q Consensus 79 Vl~~f~~fl----------------------------~~~~~------~~~IDTl~Lark~l--~------p----~~~~ 112 (304)
|+.+|.+|+ ..++. ++++||+.+++..+ . | +.++
T Consensus 84 vl~~f~~~l~~~~~~lVaHNs~~FD~~fL~~~~~r~g~~~~~~~w~~~~~~iDtl~l~r~~~~~~~~~~~wP~~~~~~~s 163 (482)
T 2qxf_A 84 FAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPS 163 (482)
T ss_dssp HHHHHHHHHTSTTEEEEESSTTTTHHHHHHHHHHHTTSCSSGGGTGGGCEEEEHHHHHHHHHHHCCTTSCCCBCTTSSBC
T ss_pred HHHHHHHHHcCCCCEEEEECCHHHHHHHHHHHHHHhCCCccccccccCCceeeHHHHHHHHHHhCcccccCcccccCCCC
Confidence 999999988 11222 56799999998533 1 2 4568
Q ss_pred CCHHHHHHHhCCC-CCCCChHHHHHHHHHHHHHHHHH
Q 048020 113 MKMASLATYFGLG-QQTHRSLDDVLMNLEVLKYCATV 148 (304)
Q Consensus 113 ~kL~~Lak~lGI~-~~~HrAL~DA~aTa~L~~~ll~~ 148 (304)
++|++|+++||++ ..+|||++||++|++||.++.++
T Consensus 164 ~kL~~L~~~~Gi~~~~aHrAL~DA~aTa~l~~~l~~~ 200 (482)
T 2qxf_A 164 FRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTR 200 (482)
T ss_dssp CCHHHHHHHTTCCCC---CTTHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 9999999999997 78999999999999999998754
No 16
>3tr8_A Oligoribonuclease; transcription, hydrolase; 2.50A {Coxiella burnetii}
Probab=99.88 E-value=5e-23 Score=181.69 Aligned_cols=134 Identities=18% Similarity=0.215 Sum_probs=103.5
Q ss_pred CCCCcEEEEEEeecCCCC---ceEEEEEEEEeCCceeeeeeE-EEEEc-CCCC-CCCChH---HHHhcCCCHHHHhCCCC
Q 048020 5 QDRSEIVFFDVETTFPIR---HIWEFGAILVCPRKLEELDKY-TTLVR-PADP-SLVSNL---CARRNDITPEDVFSAPT 75 (304)
Q Consensus 5 ~~~~~~VvfDlETTGl~~---~IIEIGAV~v~~g~~~iid~f-~~lV~-P~~~-~~I~~~---~~~ltGIT~e~L~~ap~ 75 (304)
....+||+||+||||+++ +|||||||.+ ++++.+++++ +.+|+ |... ..+++. +..+||||++|++++|+
T Consensus 6 ~~~~~~v~~D~ETTGL~p~~d~IiEIgaV~~-d~~~~i~~~~~~~~i~~p~~~l~~~~~~~~~ih~ltGIt~~~l~~~p~ 84 (186)
T 3tr8_A 6 FSDDNLIWLDLEMTGLDPERDRIIEIATIVT-NSHLDILAEGPAFAIHQPDKLLTAMDNWNTSHHTASGLLERVKNSSVD 84 (186)
T ss_dssp CCTTCEEEEEEEESSSCTTTCCEEEEEEEEE-CTTCCEEEECCCEECCCCHHHHTTSCHHHHHHHHHTSHHHHHHTCCCC
T ss_pred CCCCcEEEEEEECCCCCCCCCceEEEEEEEE-cCCeEEeeeeEEEEEeCCccccccCCcccHHHHhccCCCHHHHhcCCC
Confidence 346689999999999875 9999999954 4445666665 55686 5420 023555 45567999999999999
Q ss_pred HHHHHHHHHHHh------------------------------cCCCCCCcee--hHH-HHHHHhcCCCCCCCHHHHHHHh
Q 048020 76 FADIADTVFDIL------------------------------QAPKPKGTID--SLN-LLTERFGRRAGDMKMASLATYF 122 (304)
Q Consensus 76 f~eVl~~f~~fl------------------------------~~~~~~~~ID--Tl~-Lark~l~p~~~~~kL~~Lak~l 122 (304)
+.+++++|++|+ +..+.++++| |+. |+| .++|+..+
T Consensus 85 ~~ev~~~~l~fl~~~~~~~~~~lvghn~~FD~~FL~~~~~~~~~~~~~~~iDvsTl~elar-~~~P~~~~---------- 153 (186)
T 3tr8_A 85 EVEAETLTLAFLEKYVSAGKSPLCGNSVCQDRRFLSRYMPRLNQFFHYRHLDVTTLKILAQ-RWAPQIAA---------- 153 (186)
T ss_dssp HHHHHHHHHHHHTTTSCTTCSCEEESSTHHHHHHHHHHCHHHHHHSCSCEEEHHHHHHHHH-HHCHHHHT----------
T ss_pred HHHHHHHHHHHHHHhccCCCcEEEEEcHHHhHHHHHHHHHHcCCCCCCcEEeHHHHHHHHH-HHCccccc----------
Confidence 999999999999 1235678999 997 999 46665321
Q ss_pred CCC-CCCCChHHHHHHHHHHHHHHHHHhh
Q 048020 123 GLG-QQTHRSLDDVLMNLEVLKYCATVLL 150 (304)
Q Consensus 123 GI~-~~~HrAL~DA~aTa~L~~~ll~~l~ 150 (304)
|++ .++|||++||++|.+++++..+.++
T Consensus 154 ~~~~~~~HrAl~Da~ati~~l~~y~~~~~ 182 (186)
T 3tr8_A 154 AHIKESQHLALQDIRDSIEELRYYRAHLL 182 (186)
T ss_dssp TSCCCCCSCHHHHHHHHHHHHHHHHHHTB
T ss_pred cCCCCCCcChHHHHHHHHHHHHHHHHHhh
Confidence 775 8899999999999999999988764
No 17
>2gbz_A Oligoribonuclease; ORN, deddh, structural genomics, hydrolase; 2.30A {Xanthomonas campestris PV}
Probab=99.88 E-value=6.6e-23 Score=180.43 Aligned_cols=142 Identities=17% Similarity=0.135 Sum_probs=100.6
Q ss_pred CCCcEEEEEEeecCCCC---ceEEEEEEEEeCCcee-eeeeEEEEEcCCCCCCC----ChHHH---HhcCCCHHHHhCCC
Q 048020 6 DRSEIVFFDVETTFPIR---HIWEFGAILVCPRKLE-ELDKYTTLVRPADPSLV----SNLCA---RRNDITPEDVFSAP 74 (304)
Q Consensus 6 ~~~~~VvfDlETTGl~~---~IIEIGAV~v~~g~~~-iid~f~~lV~P~~~~~I----~~~~~---~ltGIT~e~L~~ap 74 (304)
+..+||+||+||||+++ +|||||+|+.++ .+. +.++|+++|+|+. ++ ++++. ++||||++|++++|
T Consensus 7 ~~~~~vviD~ETTGl~p~~d~IieIgav~~~~-~~~~~~~~~~~~v~p~~--~i~~~~~~~~~~~~~itGIt~~~l~~~p 83 (194)
T 2gbz_A 7 GNDRLIWIDLEMTGLDTDRDSIIEIATIVTDA-QLNVLAEGPELAIAHSL--ETLEAMDEWNRNQHRRSGLWQRVLDSQV 83 (194)
T ss_dssp -CCEEEEEEEEESCSCTTTCCEEEEEEEEEET-TCCEEEECCCEECCCCH--HHHHTSCSHHHHHHHHHTHHHHHHHCCC
T ss_pred CCCCEEEEEeECCCCCCCCCccEEEEEEEEcC-CcceeccCceEEEeCCH--HHhhccchHHHHHHHhhCCCHHHHhcCC
Confidence 56789999999999865 999999999654 333 4468999999987 55 44454 45999999999999
Q ss_pred CHHHHHHHHHHHhcCCC---------CCCceehHHHHHH--Hhc-----CCCCCCCHHHHHHHhC------CC-CCCCCh
Q 048020 75 TFADIADTVFDILQAPK---------PKGTIDSLNLLTE--RFG-----RRAGDMKMASLATYFG------LG-QQTHRS 131 (304)
Q Consensus 75 ~f~eVl~~f~~fl~~~~---------~~~~IDTl~Lark--~l~-----p~~~~~kL~~Lak~lG------I~-~~~HrA 131 (304)
++.+|+++|.+|+.... .+..+|.--|.+. .+. +.....+|..++++++ ++ .++|||
T Consensus 84 ~~~ev~~~~~~~l~~~~~~~~~~lvghn~~FD~~fL~~~~~~~~~~~~~~~~d~~~l~~l~~~~~p~~~~~i~~~~~H~A 163 (194)
T 2gbz_A 84 THAQAEAQTVAFLGEWIRAGASPMCGNSICQDRRFLHRQMSRLERYFHYRNLDVSTIKELARRWAPAVASGFAKSSAHTA 163 (194)
T ss_dssp CHHHHHHHHHHHHTTTCCTTSSCEEESSHHHHHHHHHHHCHHHHHHSCSCEEEHHHHHHHHHHHCGGGGTTCCCCSCCSH
T ss_pred CHHHHHHHHHHHHHHhCCCCCceEEecCHHHhHHHHHHHHHHhcccCCCccccHHHHHHHHHHhCHHHHhCCCCCCCccc
Confidence 99999999999992111 1223342222110 000 0001123445666665 65 689999
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 048020 132 LDDVLMNLEVLKYCATVLL 150 (304)
Q Consensus 132 L~DA~aTa~L~~~ll~~l~ 150 (304)
++||++|+++|+++++++.
T Consensus 164 l~Da~ata~ll~~~~~~~~ 182 (194)
T 2gbz_A 164 LSDVRDSIDELRHYRQFMG 182 (194)
T ss_dssp HHHHHHHHHHHHHHHTTSH
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 9999999999999988775
No 18
>4hec_A Putative uncharacterized protein; ssgcid, structural genomics, SEA structural genomics center for infectious disease, unknown; 1.80A {Mycobacterium tuberculosis}
Probab=98.68 E-value=1.7e-07 Score=82.81 Aligned_cols=134 Identities=15% Similarity=0.146 Sum_probs=86.1
Q ss_pred CcEEEEEEeecCCCC--ceEEEEEEEEeCCceeeeeeEEEEEcCCCCCCCChHHHH--hcCCCHHHHhCCCCHHHHHHHH
Q 048020 8 SEIVFFDVETTFPIR--HIWEFGAILVCPRKLEELDKYTTLVRPADPSLVSNLCAR--RNDITPEDVFSAPTFADIADTV 83 (304)
Q Consensus 8 ~~~VvfDlETTGl~~--~IIEIGAV~v~~g~~~iid~f~~lV~P~~~~~I~~~~~~--ltGIT~e~L~~ap~f~eVl~~f 83 (304)
+.-+|+|+|+||... ++|+||+|.- +| .+||..+..-.....+++..+ +.++.+.......++.++..+|
T Consensus 22 m~r~FlDTEFt~d~~~~eLISIGlV~E-dG-----rEFYav~~d~d~~~~~~wVr~~Vlp~L~~~~~~~~~s~~~i~~~L 95 (190)
T 4hec_A 22 MVRYFYDTEFIEDGHTIELISIGVVAE-DG-----REYYAVSTEFDPERAGSWVRTHVLPKLPPPASQLWRSRQQIRLDL 95 (190)
T ss_dssp EEEEEEEEEEEECSSCEEEEEEEEEET-TS-----CEEEEEETTSCGGGCCHHHHHHTGGGSCCTTSTTEECHHHHHHHH
T ss_pred eeEEEEeeeecCCCCCCCEEEEEEEcC-CC-----CEEEEEecCCChhhCcHHHHhccccCCCCCcccccCCHHHHHHHH
Confidence 458999999997443 9999999863 33 248887764322246676655 5676654444557899999999
Q ss_pred HHHhcC-C-C------CCCceehHHHHHHHhc-----C-CCC--CCCHHHHHHHhCCC------CCCCChHHHHHHHHHH
Q 048020 84 FDILQA-P-K------PKGTIDSLNLLTERFG-----R-RAG--DMKMASLATYFGLG------QQTHRSLDDVLMNLEV 141 (304)
Q Consensus 84 ~~fl~~-~-~------~~~~IDTl~Lark~l~-----p-~~~--~~kL~~Lak~lGI~------~~~HrAL~DA~aTa~L 141 (304)
.+|+.. + . ...-+|-..|+. .++ | ... ...|..++...|.+ ..+|+||.||++.+..
T Consensus 96 ~~FL~~~~~~~~eLwa~~~~yD~~~L~q-l~g~m~~lP~~~p~~~~dlr~~~~~~g~~~lp~~~~~~H~AL~DAR~n~~~ 174 (190)
T 4hec_A 96 EEFLRIDGTDSIELWAWVGAYDHVALCQ-LWGPMTALPPTVPRFTRELRQLWEDRGCPRMPPRPRDVHDALVDARDQLRR 174 (190)
T ss_dssp HHHTTTTSSCEEEEEESSCHHHHHHHHT-TTSSGGGSCTTSCSSCEEHHHHHHHTTCCCCCC-----CCHHHHHHHHHHH
T ss_pred HHHHHhcCCCCCEEEEecccccHHHHHH-HhcccccCCcccchhhHHHHHHHHHcCCCCCCCCCCCCcCcHHHHHHHHHH
Confidence 999921 1 0 112234443443 332 1 111 23577888877763 3579999999999999
Q ss_pred HHHHHHH
Q 048020 142 LKYCATV 148 (304)
Q Consensus 142 ~~~ll~~ 148 (304)
|+.+...
T Consensus 175 ~~~~~~~ 181 (190)
T 4hec_A 175 FRLITST 181 (190)
T ss_dssp HHHHHC-
T ss_pred HHHHhCc
Confidence 9987543
No 19
>2kfn_A Klenow fragment of DNA polymerase I; complex (polymerase/DNA), exonuclease, transferase, transferase/DNA complex; HET: US1; 2.03A {Escherichia coli} SCOP: c.55.3.5 e.8.1.1 PDB: 1d9f_A* 1d9d_A* 1krp_A* 1ksp_A* 1qsl_A* 1kfs_A* 2kfz_A* 2kzm_A* 2kzz_A* 1dpi_A* 1kfd_A* 1kln_A* 1d8y_A*
Probab=98.51 E-value=1.8e-06 Score=87.81 Aligned_cols=120 Identities=14% Similarity=0.050 Sum_probs=87.2
Q ss_pred CcEEEEEEeecCCCC---ceEEEEEEEEeCCceeeeeeEEEEEcCCCCCCCChHHHHhcCCCHHHHhCCCCHHHHHHHHH
Q 048020 8 SEIVFFDVETTFPIR---HIWEFGAILVCPRKLEELDKYTTLVRPADPSLVSNLCARRNDITPEDVFSAPTFADIADTVF 84 (304)
Q Consensus 8 ~~~VvfDlETTGl~~---~IIEIGAV~v~~g~~~iid~f~~lV~P~~~~~I~~~~~~ltGIT~e~L~~ap~f~eVl~~f~ 84 (304)
..+|+||+||||++. +|++||++. .++ + ..||.+.. . +++ +.+++++.++++.|.
T Consensus 26 ~~~va~DtEttgl~~~~~~iv~I~~~~-~~g--~-----~~yip~~~--~---------~~~---~~~~l~~~~vl~~L~ 83 (605)
T 2kfn_A 26 APVFAFDTETDSLDNISANLVGLSFAI-EPG--V-----AAYIPVAH--D---------YLD---APDQISRERALELLK 83 (605)
T ss_dssp SSSEEEEEEESCSCTTTCCEEEEEEEE-ETT--E-----EEEEECCC--C---------STT---CCCCCCHHHHHHHHH
T ss_pred CCeEEEEEecCCCCcccCceEEEEEEE-cCC--c-----EEEEeccc--c---------ccc---cccccCHHHHHHHHH
Confidence 367999999999854 999999884 444 2 23452222 1 111 124566888888888
Q ss_pred HHh----------------------cCCCCCCceehHHHHHHHhcCCCCCCCHHHHHHHh-CCCC--------------C
Q 048020 85 DIL----------------------QAPKPKGTIDSLNLLTERFGRRAGDMKMASLATYF-GLGQ--------------Q 127 (304)
Q Consensus 85 ~fl----------------------~~~~~~~~IDTl~Lark~l~p~~~~~kL~~Lak~l-GI~~--------------~ 127 (304)
+|+ +..+..+++||+-+++ ++.|...+++|+.|+++| |+.. .
T Consensus 84 ~~L~d~~i~kV~hnak~D~~~L~~~Gi~l~~~~~DT~laay-LL~p~~~~~~L~~La~~~Lg~~~i~~~~~~gKg~~~~~ 162 (605)
T 2kfn_A 84 PLLEDEKALKVGQNLKYDRGILANYGIELRGIAFDTMLESY-ILNSVAGRHDMDSLAERWLKHKTITFEEIAGKGKNQLT 162 (605)
T ss_dssp HHHTCTTSCEEESSHHHHHHHHHTTTCCCCCEEEEHHHHHH-HHCTTSSCCSHHHHHHHHSCCCCCCHHHHHCSSTTCCC
T ss_pred HHHcCCCCeEEEECcHHHHHHHHHCCCCCCCccccHHHHHH-HhCCCCCCCCHHHHHHHhcCCCcccHHHHhCCCcccCC
Confidence 888 2334556999998887 888888899999999988 7631 0
Q ss_pred ---------CCChHHHHHHHHHHHHHHHHHhh
Q 048020 128 ---------THRSLDDVLMNLEVLKYCATVLL 150 (304)
Q Consensus 128 ---------~HrAL~DA~aTa~L~~~ll~~l~ 150 (304)
.|.|..||.++++++.++.+++.
T Consensus 163 ~~~~~le~~~~yAa~Da~~~~~L~~~L~~~L~ 194 (605)
T 2kfn_A 163 FNQIALEEAGRYAAEDADVTLQLHLKMWPDLQ 194 (605)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 15689999999999999987764
No 20
>4gmj_B CCR4-NOT transcription complex subunit 7; mRNA decay, deadenylase, RNA bindin; HET: GOL; 2.70A {Homo sapiens}
Probab=98.07 E-value=5.3e-05 Score=70.67 Aligned_cols=138 Identities=11% Similarity=0.044 Sum_probs=92.4
Q ss_pred CcEEEEEEeecCCCC------------------------ceEEEEEEEEeCCce----eeeeeEEEEEcCCCCCCCChHH
Q 048020 8 SEIVFFDVETTFPIR------------------------HIWEFGAILVCPRKL----EELDKYTTLVRPADPSLVSNLC 59 (304)
Q Consensus 8 ~~~VvfDlETTGl~~------------------------~IIEIGAV~v~~g~~----~iid~f~~lV~P~~~~~I~~~~ 59 (304)
..||++|+|.+|... .|||+|....+.... ...-.|+....|... ...+..
T Consensus 34 ~~fVAiDtEFpGvv~rp~~~~~~t~d~~Y~~lr~nvd~l~iIQlGLt~f~~~g~~p~~~~~wqFNF~f~~~~d-~~~~~S 112 (285)
T 4gmj_B 34 YNYVAMDTEFPGVVARPIGEFRSNADYQYQLLRCNVDLLKIIQLGLTFMNEQGEYPPGTSTWQFNFKFNLTED-MYAQDS 112 (285)
T ss_dssp CCEEEEEEECCCCCCCCTTCCTTSTTHHHHHHHHHHTTSCCCEEEEEEECTTSCCCSSCCEEEEEBCCCTTTS-CCCHHH
T ss_pred CCEEEEEEEecCccCCCCCccCCCHHHHHHHHHHHHHhhcceeEEEEeeccCCCcCCCeeEEEEEEEeccccc-cccHHH
Confidence 469999999999410 699999998874321 134567777777764 345555
Q ss_pred HHh---cCCCHHHHh-CCCCHHHHHHHHHHHh-----------------------------------------cCCCCCC
Q 048020 60 ARR---NDITPEDVF-SAPTFADIADTVFDIL-----------------------------------------QAPKPKG 94 (304)
Q Consensus 60 ~~l---tGIT~e~L~-~ap~f~eVl~~f~~fl-----------------------------------------~~~~~~~ 94 (304)
.++ +||.-.... .+.+..+..+.+...- ...|+ .
T Consensus 113 I~fL~~~G~DF~k~~~~GI~~~~f~ell~~sglvl~~~v~WvtfH~~yDf~yL~k~lt~~~LP~~~~eF~~~l~~~FP-~ 191 (285)
T 4gmj_B 113 IELLTTSGIQFKKHEEEGIETQYFAELLMTSGVVLCEGVKWLSFHSGYDFGYLIKILTNSNLPEEELDFFEILRLFFP-V 191 (285)
T ss_dssp HHHHHHHTCCHHHHHHHCBCHHHHHHHHHTSSSSSCTTCEEEESSCHHHHHHHHHHHHTSCCCSSHHHHHHHHHHHCS-C
T ss_pred HHHHHHcCCCHHHHHHcCCCHHHHHHHHHHhHHHhcCCCceEEecchhhHHHHHHHHhCCCCCCCHHHHHHHHHHHCc-h
Confidence 544 677755543 3445444333332211 11123 4
Q ss_pred ceehHHHHHHHhcCCCCCCCHHHHHHHhCCC--CCCCChHHHHHHHHHHHHHHHHHhh
Q 048020 95 TIDSLNLLTERFGRRAGDMKMASLATYFGLG--QQTHRSLDDVLMNLEVLKYCATVLL 150 (304)
Q Consensus 95 ~IDTl~Lark~l~p~~~~~kL~~Lak~lGI~--~~~HrAL~DA~aTa~L~~~ll~~l~ 150 (304)
++|+..+++ .+ ..+ .-+|+.+|+.+|++ +..|.|-+|++.|+.+|.+|.+.++
T Consensus 192 vYD~K~l~~-~~-~~l-~ggL~~lA~~L~v~r~g~~HqAGsDSllT~~~F~kl~~~~f 246 (285)
T 4gmj_B 192 IYDVKYLMK-SC-KNL-KGGLQEVAEQLELERIGPQHQAGSDSLLTGMAFFKMREMFF 246 (285)
T ss_dssp EEEHHHHGG-GS-TTC-CSCHHHHHHHTTCCCCSCTTSHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHH-hc-ccc-CChHHHHHHhCCCCCCCCCCcchhHHHHHHHHHHHHHHHHh
Confidence 778877776 22 222 34799999999996 7889999999999999999988875
No 21
>2d5r_A CCR4-NOT transcription complex subunit 7; poly(A) deadenylase, antiproliferative protein, transcription; 2.50A {Homo sapiens} SCOP: c.55.3.9
Probab=97.46 E-value=0.0008 Score=61.66 Aligned_cols=138 Identities=12% Similarity=0.062 Sum_probs=90.2
Q ss_pred CcEEEEEEeecCCC--------C----------------ceEEEEEEEEeCCcee----eeeeEEEEEcCCCCCCCChHH
Q 048020 8 SEIVFFDVETTFPI--------R----------------HIWEFGAILVCPRKLE----ELDKYTTLVRPADPSLVSNLC 59 (304)
Q Consensus 8 ~~~VvfDlETTGl~--------~----------------~IIEIGAV~v~~g~~~----iid~f~~lV~P~~~~~I~~~~ 59 (304)
..||++|+|.+|.. . .|||+|....+..+.. ..-.|+...+.... ...+..
T Consensus 24 ~~fvAmDtEFpGvv~rp~g~f~~~~~~~Y~~lr~nVd~l~iIQlGlt~~~~~g~~p~~~~~wqFNF~F~~~~d-~~~~~S 102 (252)
T 2d5r_A 24 YNYVAMDTEFPGVVARPIGEFRSNADYQYQLLRCNVDLLKIIQLGLTFMNEQGEYPPGTSTWQFNFKFNLTED-MYAQDS 102 (252)
T ss_dssp CCEEEEEEECCCCCCCCCSCCSSHHHHHHHHHHHHHTTCCCCEEEEEEECTTSCCCSSCCEEEEEBCCCTTTS-CCCHHH
T ss_pred CCEEEEEeeecceecccCCCCCCCHHHHHHHHHHhhhhcceeEEEEEEEccCCCCCCCceeEEEEEEECCccc-ccCHHH
Confidence 47999999999941 0 8999999988843211 24556666555443 334444
Q ss_pred H---HhcCCCHHHHh-CCCCHHHHHHHHHH----------Hh-------------------------------cCCCCCC
Q 048020 60 A---RRNDITPEDVF-SAPTFADIADTVFD----------IL-------------------------------QAPKPKG 94 (304)
Q Consensus 60 ~---~ltGIT~e~L~-~ap~f~eVl~~f~~----------fl-------------------------------~~~~~~~ 94 (304)
. +-+||.-+... .+.++.+..+.+.. |+ ...|+ .
T Consensus 103 i~fL~~~G~DF~k~~~~GI~~~~F~ell~~sglvl~~~v~Witfhg~yDf~yL~k~L~~~~LP~~~~~F~~~l~~~FP-~ 181 (252)
T 2d5r_A 103 IELLTTSGIQFKKHEEEGIETQYFAELLMTSGVVLCEGVKWLSFHSGYDFGYLIKILTNSNLPEEELDFFEILRLFFP-V 181 (252)
T ss_dssp HHHHHHHTCCHHHHHHHCBCHHHHHHHHHTTTSSSSSSCEEEESSCHHHHHHHHHHHHTSCCCSSHHHHHHHHHHHCS-C
T ss_pred HHHHHHcCCChhHHHhcCCCHHHHHHHHHhcCcccCCCceEEEecCcchHHHHHHHhcCCCCCCCHHHHHHHHHHHCc-c
Confidence 3 34577665543 34454443333321 11 12233 6
Q ss_pred ceehHHHHHHHhcCCCCCCCHHHHHHHhCCC--CCCCChHHHHHHHHHHHHHHHHHhh
Q 048020 95 TIDSLNLLTERFGRRAGDMKMASLATYFGLG--QQTHRSLDDVLMNLEVLKYCATVLL 150 (304)
Q Consensus 95 ~IDTl~Lark~l~p~~~~~kL~~Lak~lGI~--~~~HrAL~DA~aTa~L~~~ll~~l~ 150 (304)
++|+.-+++ .. .++ .-+|..+|+.+|+. +..|.|-.|+..|+.+|.+|.+...
T Consensus 182 iyD~K~l~~-~~-~~l-~~gL~~la~~L~v~r~g~~HqAGsDsllT~~~F~km~~~~f 236 (252)
T 2d5r_A 182 IYDVKYLMK-SC-KNL-KGGLQEVAEQLELERIGPQHQAGSDSLLTGMAFFKMREMFF 236 (252)
T ss_dssp EEEHHHHGG-GC-TTC-CSSHHHHHHHHTCCCCSSTTSHHHHHHHHHHHHHHHHHHTS
T ss_pred hhhHHHHHH-Hh-ccc-CCCHHHHHHHcCCCccCcccchhhhHHHHHHHHHHHHHHhc
Confidence 778877776 22 233 35699999999995 7889999999999999999988774
No 22
>1x9m_A DNA polymerase; DNA ploymerase, N-2-acetylaminofluorene, replication block, mutagenesis, transferase/electron transport/DNA complex; HET: DNA 2DT 8FG; 2.10A {Enterobacteria phage T7} SCOP: c.55.3.5 e.8.1.1 PDB: 1skr_A* 1skw_A* 1sl0_A* 1sks_A* 1sl2_A* 1t7p_A* 1t8e_A* 1tk0_A* 1tk5_A* 1tk8_A* 1tkd_A* 1sl1_A* 1x9s_A* 1x9w_A* 1zyq_A* 2ajq_A*
Probab=97.40 E-value=2.3e-05 Score=81.13 Aligned_cols=61 Identities=20% Similarity=0.173 Sum_probs=46.4
Q ss_pred CCCC-CCceehHHHHHHHhcCCCCCCCHHHHHHHh--------CC-------C-------------C--C----------
Q 048020 89 APKP-KGTIDSLNLLTERFGRRAGDMKMASLATYF--------GL-------G-------------Q--Q---------- 127 (304)
Q Consensus 89 ~~~~-~~~IDTl~Lark~l~p~~~~~kL~~Lak~l--------GI-------~-------------~--~---------- 127 (304)
..+. .+++||+-+++ ++.|...+++|+.|++.| |. + . .
T Consensus 81 i~l~~~~~~DTmlaay-LL~p~~~~~~L~~La~~~L~~sL~~~g~~lg~~Ki~~~~~~g~~~~~kg~~~~~~~~~~~~~~ 159 (698)
T 1x9m_A 81 FHLPRENCIDTLVLSR-LIHSNLKDTDMGLLRSGKLPGALEAWGYRLGEMKGEYKDDFKRMLEEQGEEYVDGMEWWNFNE 159 (698)
T ss_dssp CCCCGGGEEEHHHHHH-HHTTTSCCCTTTTSCGGGSCSCCCHHHHHHHHHHHHHHHHHHHHHHHTTCCCCTTGGGTSCCH
T ss_pred ccCCCCcchhHHHHHH-HhCCCCCCCCHHHHHHHHcccchhhhcccccccccCHHHHhCcccccccccccccCCccccCH
Confidence 3445 67999998888 888877788888877766 31 0 0 1
Q ss_pred --CCChHHHHHHHHHHHHHHHHHhh
Q 048020 128 --THRSLDDVLMNLEVLKYCATVLL 150 (304)
Q Consensus 128 --~HrAL~DA~aTa~L~~~ll~~l~ 150 (304)
.|.|..||.+|.+|+.++.+++.
T Consensus 160 ~~~~YA~~Da~~t~~L~~~L~~~L~ 184 (698)
T 1x9m_A 160 EMMDYNVQDVVVTKALLEKLLSDKH 184 (698)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46789999999999999988664
No 23
>2p51_A SPCC18.06C protein; DEDD nuclease fold, hydrolase, gene regulation; 1.40A {Schizosaccharomyces pombe} PDB: 3g0z_A 3g10_A
Probab=97.34 E-value=0.0029 Score=60.14 Aligned_cols=139 Identities=13% Similarity=0.090 Sum_probs=90.9
Q ss_pred CCcEEEEEEeecCCC---------C---------------ceEEEEEEEEeCCcee----eeeeEEEEEcCCCCCCCChH
Q 048020 7 RSEIVFFDVETTFPI---------R---------------HIWEFGAILVCPRKLE----ELDKYTTLVRPADPSLVSNL 58 (304)
Q Consensus 7 ~~~~VvfDlETTGl~---------~---------------~IIEIGAV~v~~g~~~----iid~f~~lV~P~~~~~I~~~ 58 (304)
+..||++|+|.+|.. . .|||+|....+..+.. ..-.|+...+.... ...+.
T Consensus 44 ~~~fVAmDtEFpGvv~rp~g~f~~~~e~~Yq~lR~NVd~l~iIQlGLt~fd~~G~~p~~~~twqFNF~F~~~~d-~~~~~ 122 (333)
T 2p51_A 44 RYPVVSMDTEFPGVVARPLGVFKSSDDYHYQTLRANVDSLKIIQIGLALSDEEGNAPVEACTWQFNFTFNLQDD-MYAPE 122 (333)
T ss_dssp TSCEEEEEEECCCCCCCCCSCCSSSHHHHHHHHHHHHHHSCCCEEEEEEECTTSCCCTTCSEEEEEBCCCTTTS-CCCHH
T ss_pred hCCEEEEeeeccccccccccccCCCHHHHHHHHHHhhhhccceEEEEEEEccCCCCCCCceeEEEEEEECCccc-ccCHH
Confidence 458999999999941 0 8999999988853211 24566666555443 33444
Q ss_pred HH---HhcCCCHHHHh-CCCCHHHHHHHHHH----------Hh-------------------------------cCCCCC
Q 048020 59 CA---RRNDITPEDVF-SAPTFADIADTVFD----------IL-------------------------------QAPKPK 93 (304)
Q Consensus 59 ~~---~ltGIT~e~L~-~ap~f~eVl~~f~~----------fl-------------------------------~~~~~~ 93 (304)
.. +-+||.-+... .+.++.+..+.+.. |+ ...|+
T Consensus 123 SI~fL~~~G~DF~k~~~~GI~~~~F~elL~~SGLvl~~~V~Witfhg~YDfgyLlK~Lt~~~LP~~~~eF~~~l~~~FP- 201 (333)
T 2p51_A 123 SIELLTKSGIDFKKHQEVGIEPADFAELLIGSGLVLQEEVTWITFHSGYDFAYLLKAMTQIPLPAEYEEFYKILCIYFP- 201 (333)
T ss_dssp HHHHHHHTTCCHHHHHHHCBCHHHHHHHHHTTTSSSCTTCEEEESSCHHHHHHHHHHHHCSCCCSSHHHHHHHHHHHSS-
T ss_pred HHHHHHHcCCChhHHHHcCCCHHHHHHHHHhcCcccCCCceEEEeccchhHHHHHHHhcCCCCCCCHHHHHHHHHHHCc-
Confidence 43 33577665543 34454433333221 11 11233
Q ss_pred CceehHHHHHHHhcCCCCCCCHHHHHHHhCCC--CCCCChHHHHHHHHHHHHHHHHHhh
Q 048020 94 GTIDSLNLLTERFGRRAGDMKMASLATYFGLG--QQTHRSLDDVLMNLEVLKYCATVLL 150 (304)
Q Consensus 94 ~~IDTl~Lark~l~p~~~~~kL~~Lak~lGI~--~~~HrAL~DA~aTa~L~~~ll~~l~ 150 (304)
.++||.-+++. +. .+ .-+|..+|+.||+. +..|.|-.|+..|+.+|.+|.+.+.
T Consensus 202 ~iYD~K~l~~~-~~-~l-~ggL~~lA~~L~v~Rig~~HqAGsDSlLT~~~F~kl~~~~f 257 (333)
T 2p51_A 202 KNYDIKYIMKS-VL-NN-SKGLQDIADDLQIHRIGPQHQAGSDALLTARIFFEIRSRYF 257 (333)
T ss_dssp SEEEHHHHHTT-TT-CC-CCCHHHHHHHTTCCCCSCTTSHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhHHHHHHH-hc-cc-cCCHHHHHHHcCCCccCcchhhhhHHHHHHHHHHHHHHHhc
Confidence 67788777762 22 22 35799999999995 7889999999999999999998774
No 24
>1uoc_A POP2; hydrolase, DEDD nuclease, mRNA degradation, poly(A) tail, transcription regulation, repressor, phosphorylation.; 2.3A {Saccharomyces cerevisiae} SCOP: c.55.3.9
Probab=97.19 E-value=0.004 Score=58.13 Aligned_cols=140 Identities=12% Similarity=0.052 Sum_probs=89.6
Q ss_pred CCcEEEEEEeecCCC--------C----------------ceEEEEEEEEeCCce-----eeeeeEEEEEcCCCCCCCCh
Q 048020 7 RSEIVFFDVETTFPI--------R----------------HIWEFGAILVCPRKL-----EELDKYTTLVRPADPSLVSN 57 (304)
Q Consensus 7 ~~~~VvfDlETTGl~--------~----------------~IIEIGAV~v~~g~~-----~iid~f~~lV~P~~~~~I~~ 57 (304)
...||++|+|.+|.. . .|||+|....+..+. ...-.|+...+.... ...+
T Consensus 37 ~~~fVAmDtEFpGvv~rp~g~f~~~~d~~Yq~lr~nVd~l~iIQlGLt~~~~~g~~p~~~~~~wqFNF~F~~~~d-~~~~ 115 (289)
T 1uoc_A 37 QYNHVSISTEFVGTLARPIGTFRSKVDYHYQTMRANVDFLNPIQLGLSLSDANGNKPDNGPSTWQFNFEFDPKKE-IMST 115 (289)
T ss_dssp TSCEEEEEEEEEC----------CHHHHHHHHHHHHHTTCEEEEEEEEEECTTCCCCSSSCSEEEEEBCCCTTCC-CCCH
T ss_pred hCCEEEEEeeecceeccCCcccCCCHHHHHHHHHHhhhhccceEEEEEEEccCCCcCCCCcceEEEEEEECCccc-cccH
Confidence 468999999999941 0 899999998874321 124566666555442 2344
Q ss_pred HHH---HhcCCCHHHHh-CCCCHHHHHHHHH-----------------------------------------HHhcCCCC
Q 048020 58 LCA---RRNDITPEDVF-SAPTFADIADTVF-----------------------------------------DILQAPKP 92 (304)
Q Consensus 58 ~~~---~ltGIT~e~L~-~ap~f~eVl~~f~-----------------------------------------~fl~~~~~ 92 (304)
... +-+||.-+... .+.++.+..+.+. +++...|+
T Consensus 116 ~SI~fL~~~G~DF~k~~~~GI~~~~F~ell~~sgLvl~~~v~Witfhg~yDfgyL~k~Lt~~~LP~~~~~F~~~l~~~FP 195 (289)
T 1uoc_A 116 ESLELLRKSGINFEKHENLGIDVFEFSQLLMDSGLMMDDSVTWITYHAAYDLGFLINILMNDSMPNNKEDFEWWVHQYMP 195 (289)
T ss_dssp HHHHHHHHTTCCHHHHHHHCBCHHHHHHHHHTSSCSSCTTSEEEESSTTHHHHHHHHHHTTSCCCSSHHHHHHHHHHHCS
T ss_pred HHHHHHHHcCCChhHHHHcCCCHHHHHHHHHhcCCccCCCceEEEccCcchHHHHHHHhccccCCcCHHHHHHHHHHhCc
Confidence 333 34566655433 3444433322222 11111233
Q ss_pred CCceehHHHHHHHhcCCCC--------------CCCHHHHHHHhCCC--CCCCChHHHHHHHHHHHHHHHHHhh
Q 048020 93 KGTIDSLNLLTERFGRRAG--------------DMKMASLATYFGLG--QQTHRSLDDVLMNLEVLKYCATVLL 150 (304)
Q Consensus 93 ~~~IDTl~Lark~l~p~~~--------------~~kL~~Lak~lGI~--~~~HrAL~DA~aTa~L~~~ll~~l~ 150 (304)
.++|+.-+++. .. .+. ..+|..+|+.+|++ +..|.|-.|+..|+.+|.+|.+...
T Consensus 196 -~iyD~K~l~~~-~~-~l~~~~~~~~~~~~~~~~~~L~~lA~~L~v~r~g~~HqAGsDSllT~~~F~kl~~~~~ 266 (289)
T 1uoc_A 196 -NFYDLNLVYKI-IQ-EFKNPQLQQSSQQQQQQQYSLTTLADELGLPRFSIFTTTGGQSLLMLLSFCQLSKLSM 266 (289)
T ss_dssp -SEEEHHHHHHH-HT-TTCC-------------CCSHHHHHHHTTCCCCGGGGSHHHHHHHHHHHHHHHHHHTT
T ss_pred -cceeHHHHHHH-HH-hccCcccccccccccccCCCHHHHHHHcCCCccCcccccHHHHHHHHHHHHHHHHHHh
Confidence 68898888773 22 222 35799999999996 6789999999999999999988764
No 25
>4dfk_A DNA polymerase I, thermostable; DNA polymerase, transferase-DNA complex; HET: DNA DOC 0L5; 1.65A {Thermus aquaticus} PDB: 1jxe_A* 3ktq_A* 3lwl_A* 3lwm_A* 3m8s_A* 3m8r_A* 3oju_A* 3rr7_A* 3rr8_A* 3rrg_A* 3ojs_A* 3rtv_A* 3sv3_A* 3sv4_A* 3syz_A* 3sz2_A* 3t3f_A* 4df4_A* 4df8_A* 4dfj_A* ...
Probab=96.00 E-value=0.12 Score=51.93 Aligned_cols=58 Identities=12% Similarity=0.020 Sum_probs=48.2
Q ss_pred hcCCCCCCceehHHHHHHHhcCCCCCCCHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHHh
Q 048020 87 LQAPKPKGTIDSLNLLTERFGRRAGDMKMASLATYFGLGQQTHRSLDDVLMNLEVLKYCATVL 149 (304)
Q Consensus 87 l~~~~~~~~IDTl~Lark~l~p~~~~~kL~~Lak~lGI~~~~HrAL~DA~aTa~L~~~ll~~l 149 (304)
.+..+. +++||+-.++ ++.|. +++|++||++|+.. -.|+|..||.+|++++..+.+++
T Consensus 71 ~Gi~~~-~~fDT~laAy-LL~p~--~~~L~~La~~yl~~-~gk~a~~DA~~t~~L~~~L~~~L 128 (540)
T 4dfk_A 71 EGLGLP-PGDDPMLLAY-LLDPS--NTTPEGVARRYGGE-WTEEAGERAALSERLFANLWGRL 128 (540)
T ss_dssp TTCCCC-BCCCHHHHHH-HHCTT--CCCHHHHHHHHTSC-CCSCHHHHHHHHHHHHHHHHHHT
T ss_pred cCCCCC-cceeHHHHHH-HhCCC--CCCHHHHHHHHhhh-hccchHHHHHHHHHHHHHHHHHH
Confidence 344445 7899998888 88887 89999999998643 34789999999999999998887
No 26
>3f2b_A DNA-directed DNA polymerase III alpha chain; DNA polymerase C, DNA polymerase III; HET: DGT; 2.39A {Geobacillus kaustophilus} PDB: 3f2c_A* 3f2d_A*
Probab=95.90 E-value=0.00053 Score=73.81 Aligned_cols=45 Identities=16% Similarity=-0.078 Sum_probs=37.6
Q ss_pred ccCCCceeeec---cCcccc---cccccccccccCcccCCCCccccCCCcc
Q 048020 171 ARSRINVRSSP---EGTSQN---LSAPSSKFKFENASNVSPPDQGKEGIHP 215 (304)
Q Consensus 171 ~~~r~~h~~il---~~glkn---lvs~s~~~yf~~~prip~s~~~~~~~~~ 215 (304)
++.+++|.++| +.|++| |||.+|++||+++||||++.|.+|.-+-
T Consensus 200 ~~~~~~hlvlLAkN~~Gy~nL~kLvS~a~~~~~~~~pri~~~~L~~~~egL 250 (1041)
T 3f2b_A 200 SGSGPFHVTLLAQNETGLKNLFKLVSLSHIQYFHRVPRIPRSVLVKHRDGL 250 (1041)
T ss_dssp ----CEEEEEEECSHHHHHHHHHHHHHHHTTTCSSSCCEEHHHHHHTCTTE
T ss_pred ccCCCceEEEEeCCHHHHHHHHHHHHHHHHhcccCCCCcCHHHHHhccCCe
Confidence 45678999999 779999 9999999999999999999999986553
No 27
>1qht_A Protein (DNA polymerase); archaea, hyperthermostable, family B polymer alpha family polymerase, transferase; 2.10A {Thermococcus SP} SCOP: c.55.3.5 e.8.1.1 PDB: 1tgo_A 2xhb_A* 2vwj_A* 2vwk_A* 1wns_A* 1wn7_A 1qqc_A* 4ahc_A* 4ail_C* 3a2f_A* 2jgu_A* 1d5a_A
Probab=94.67 E-value=0.26 Score=51.39 Aligned_cols=117 Identities=10% Similarity=0.061 Sum_probs=74.5
Q ss_pred CCcEEEEEEeecC---CCC---ceEEEEEEEEeCCceeeeeeEEEEEcCCCCCCCChHHHHhcCCCHHHHhCCCCHHHHH
Q 048020 7 RSEIVFFDVETTF---PIR---HIWEFGAILVCPRKLEELDKYTTLVRPADPSLVSNLCARRNDITPEDVFSAPTFADIA 80 (304)
Q Consensus 7 ~~~~VvfDlETTG---l~~---~IIEIGAV~v~~g~~~iid~f~~lV~P~~~~~I~~~~~~ltGIT~e~L~~ap~f~eVl 80 (304)
..++++||+||+| +++ +|+.||.+. .++ ..+ +. ++| + ..+.+...++..+.+
T Consensus 134 ~l~ilsfDIEt~~~~~p~~~~d~Ii~Is~~~-~~~-~~~---~t--~~~-----i----------~~~~v~~~~~E~~LL 191 (775)
T 1qht_A 134 ELTMLAFAIATLYHEGEEFGTGPILMISYAD-GSE-ARV---IT--WKK-----I----------DLPYVDVVSTEKEMI 191 (775)
T ss_dssp CCCEEEEEEEECCCTTCCTTCSCEEEEEEEC-SSC-EEE---EE--SSC-----C----------CCSSEEECSCHHHHH
T ss_pred CcEEEEEEEEEcCCCCCCCCCCcEEEEEEEe-cCC-Cee---Ee--ecc-----c----------cccceEEcCCHHHHH
Confidence 4589999999999 543 899999653 222 111 11 122 1 112345567788888
Q ss_pred HHHHHHh----------------------------cCCC-----------------------CCCceehHHHHHHHhcCC
Q 048020 81 DTVFDIL----------------------------QAPK-----------------------PKGTIDSLNLLTERFGRR 109 (304)
Q Consensus 81 ~~f~~fl----------------------------~~~~-----------------------~~~~IDTl~Lark~l~p~ 109 (304)
.+|.+++ +.++ ....+|++.++++. ..
T Consensus 192 ~~f~~~i~~~dPDiivGyN~~~FDlpyL~~Ra~~~gi~~~lgR~~~~~~~~~~g~~~~~~i~Gr~~lDl~~~~k~~--~~ 269 (775)
T 1qht_A 192 KRFLRVVREKDPDVLITYNGDNFDFAYLKKRCEELGIKFTLGRDGSEPKIQRMGDRFAVEVKGRIHFDLYPVIRRT--IN 269 (775)
T ss_dssp HHHHHHHHHHCCSEEEESSTTTTHHHHHHHHHHHTTCCCCCSTTSCCCEEEEETTEEEEECTTSEEEEHHHHHHHH--SC
T ss_pred HHHHHHHHhcCCCEEEEeCCCCccHHHHHHHHHHcCCCcccccCCCcCceeecCceeeEEecCeEEEEHHHHHHHh--cC
Confidence 8888887 1111 13467999999853 35
Q ss_pred CCCCCHHHHHH-HhCCC--CCCC----------C--------hHHHHHHHHHHHHHHHH
Q 048020 110 AGDMKMASLAT-YFGLG--QQTH----------R--------SLDDVLMNLEVLKYCAT 147 (304)
Q Consensus 110 ~~~~kL~~Lak-~lGI~--~~~H----------r--------AL~DA~aTa~L~~~ll~ 147 (304)
+.+++|+++|+ .+|.. .-.| . .+.||..|..|+.+++.
T Consensus 270 l~sysL~~Va~~~Lg~~K~dv~~~~i~~~~~~~~~l~~l~~Y~~~Da~lt~~L~~~~~~ 328 (775)
T 1qht_A 270 LPTYTLEAVYEAVFGKPKEKVYAEEIAQAWESGEGLERVARYSMEDAKVTYELGREFFP 328 (775)
T ss_dssp CSCCCHHHHHHHHHCCCCCCCCHHHHHHHHTTTCSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCcCCHHHHHHHHhCCCCCccCHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 68899999998 57874 1111 1 25688889988876653
No 28
>1noy_A Protein (DNA polymerase (E.C.2.7.7.7)); exonuclease, DNA-binding, complex (nucleotidyltransferase/DNA); HET: DNA; 2.20A {Enterobacteria phage T4} SCOP: c.55.3.5 PDB: 1noz_A*
Probab=94.28 E-value=0.67 Score=44.19 Aligned_cols=51 Identities=18% Similarity=0.062 Sum_probs=37.5
Q ss_pred ceehHHHHHHHhcCCCCCCCHHHHHH-HhCCCCCCC-C----------------hHHHHHHHHHHHHHH
Q 048020 95 TIDSLNLLTERFGRRAGDMKMASLAT-YFGLGQQTH-R----------------SLDDVLMNLEVLKYC 145 (304)
Q Consensus 95 ~IDTl~Lark~l~p~~~~~kL~~Lak-~lGI~~~~H-r----------------AL~DA~aTa~L~~~l 145 (304)
.+|++.++++.-+..+.+++|+++|+ .+|.....| . .+.||..+.+|+.++
T Consensus 267 ~lD~~~~~k~~~~~~l~sysL~~Va~~~Lg~~K~d~~~~i~~~~~~~~~~l~~Y~~~D~~l~~~L~~kl 335 (388)
T 1noy_A 267 ILDYLDLYKKFAFTNLPSFSLESVAQHETKKGKLPYDGPINKLRETNHQRYISYNIIDVESVQAIDKIR 335 (388)
T ss_dssp ECCHHHHHHHHTCCCCSCCSHHHHHHHHHSCCCCCCSSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EeEHHHHHhhcCcCcccCCCHHHHHHHHhCCCCCCcHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHH
Confidence 78999999953233378999999999 567642223 2 367999999999874
No 29
>2e6m_A Werner syndrome ATP-dependent helicase homolog; APO form, hydrolase; 2.00A {Mus musculus} PDB: 2e6l_A 2fby_A 2fbv_A 2fbx_A 2fbt_A 2fc0_A*
Probab=91.01 E-value=1.7 Score=37.08 Aligned_cols=74 Identities=8% Similarity=0.038 Sum_probs=47.3
Q ss_pred CHHHHHHHHHHHhcCCCCCCceehHHHHHHHhcCCCCCCCHHHHHHHh-CCC--C----------C-------CCChHHH
Q 048020 75 TFADIADTVFDILQAPKPKGTIDSLNLLTERFGRRAGDMKMASLATYF-GLG--Q----------Q-------THRSLDD 134 (304)
Q Consensus 75 ~f~eVl~~f~~fl~~~~~~~~IDTl~Lark~l~p~~~~~kL~~Lak~l-GI~--~----------~-------~HrAL~D 134 (304)
....-+..+....+....+ ++|...++...+.| ..+++|+.|++.| |.. . . .+-|..|
T Consensus 103 ~~k~D~~~L~~~~gi~~~~-~fDlt~lAayll~~-~~~~~L~~L~~~~l~~~~~K~k~~~~s~W~~~~L~~~q~~YAa~D 180 (208)
T 2e6m_A 103 GIEGDQWKLLRDFDVKLES-FVELTDVANEKLKC-AETWSLNGLVKHVLGKQLLKDKSIRCSNWSNFPLTEDQKLYAATD 180 (208)
T ss_dssp SHHHHHHHHHHHHCCCCCS-EEEHHHHHHHHTTC-CCCCCHHHHHHHHHSCBCCCCHHHHTSCTTSSSCCHHHHHHHHHH
T ss_pred eeHHHHHHHHHHCCCCCCC-EEEHHHHHHHHccC-CCChhHHHHHHHHcCCCcCCCCCeeeCCCCCCCCCHHHHHHHHHH
Confidence 3444455555544544444 99944466646666 4679999999987 652 1 1 0115689
Q ss_pred HHHHHHHHHHHHHHhh
Q 048020 135 VLMNLEVLKYCATVLL 150 (304)
Q Consensus 135 A~aTa~L~~~ll~~l~ 150 (304)
|.++.+++..+.+++.
T Consensus 181 a~~~~~L~~~L~~~L~ 196 (208)
T 2e6m_A 181 AYAGLIIYQKLGNLGD 196 (208)
T ss_dssp HHHHHHHHHHHHTCC-
T ss_pred HHHHHHHHHHHHhccc
Confidence 9999999888877664
No 30
>3saf_A Exosome component 10; exoribonuclease, RNA exosome, hydrolase; 2.50A {Homo sapiens} PDB: 3sag_A 3sah_A 2cpr_A
Probab=90.82 E-value=1.7 Score=42.23 Aligned_cols=55 Identities=11% Similarity=0.092 Sum_probs=40.7
Q ss_pred CCceehHHHHHHHhcCCCCCCCHHHHHHH-hCCC-CCC----------------CChHHHHHHHHHHHHHHHHHhh
Q 048020 93 KGTIDSLNLLTERFGRRAGDMKMASLATY-FGLG-QQT----------------HRSLDDVLMNLEVLKYCATVLL 150 (304)
Q Consensus 93 ~~~IDTl~Lark~l~p~~~~~kL~~Lak~-lGI~-~~~----------------HrAL~DA~aTa~L~~~ll~~l~ 150 (304)
..++||+-.++ ++++ .+++|+.|++. +|+. ... +-|..||.++..|+..|..++.
T Consensus 206 ~~~fDT~lAa~-lL~~--~~~gL~~Lv~~~Lg~~l~K~~~~sdW~~rpLs~~q~~YAA~DA~~ll~L~~~L~~~L~ 278 (428)
T 3saf_A 206 VNMFDTHQAAR-LLNL--GRHSLDHLLKLYCNVDSNKQYQLADWRIRPLPEEMLSYARDDTHYLLYIYDKMRLEMW 278 (428)
T ss_dssp SSEEEHHHHHH-HTTC--SCCSHHHHHHHHHCCCCCCTTTTSCTTCSSCCHHHHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred CceeechhHHH-HhCC--CCCCHHHHHHHHcCCCCCccccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46899997666 6665 35899999885 4763 111 2266899999999999988875
No 31
>3iay_A DNA polymerase delta catalytic subunit; protein-DNA complex, DNA replication, DNA-BI DNA-directed DNA polymerase, exonuclease, hydrolase; HET: DNA DOC DCP; 2.00A {Saccharomyces cerevisiae}
Probab=89.41 E-value=5.2 Score=42.56 Aligned_cols=125 Identities=12% Similarity=0.179 Sum_probs=77.6
Q ss_pred CCcEEEEEEeecCC-----CC---ceEEEEEEEEeCCceeeeeeEEEEEcCCCCCCCChHHHHhcCCCHHHHhCCCCHHH
Q 048020 7 RSEIVFFDVETTFP-----IR---HIWEFGAILVCPRKLEELDKYTTLVRPADPSLVSNLCARRNDITPEDVFSAPTFAD 78 (304)
Q Consensus 7 ~~~~VvfDlETTGl-----~~---~IIEIGAV~v~~g~~~iid~f~~lV~P~~~~~I~~~~~~ltGIT~e~L~~ap~f~e 78 (304)
.-+++.||+||++. ++ .||+|+.+.-..|......+-...+.+.. ++ ....|...++..+
T Consensus 248 plrilSfDIEt~~~~g~fP~~~~D~Ii~IS~~v~~~g~~~~~~r~~f~l~~~~--~~----------~~~~V~~~~sE~e 315 (919)
T 3iay_A 248 PLRIMSFDIECAGRIGVFPEPEYDPVIQIANVVSIAGAKKPFIRNVFTLNTCS--PI----------TGSMIFSHATEEE 315 (919)
T ss_dssp CCEEEEEEEEECCCTTSCCCTTTCCEEEEEEEEEETTCSSCSEEEEEEESCCC--CB----------TTBEEEEESSHHH
T ss_pred CceEEEEEEEECCCCCCCCCCCCCcEEEEEEEEecCCCcccceeEEEEecCCC--CC----------CCCeEEECCCHHH
Confidence 44789999999862 22 99999987766542211111111123322 21 2234566778899
Q ss_pred HHHHHHHHh----------------------------cCC----------------------------------CC-CCc
Q 048020 79 IADTVFDIL----------------------------QAP----------------------------------KP-KGT 95 (304)
Q Consensus 79 Vl~~f~~fl----------------------------~~~----------------------------------~~-~~~ 95 (304)
.+.+|.+|+ +.+ +. ...
T Consensus 316 LL~~F~~~i~~~DPDIIvGyNi~~FDlpyL~~Ra~~lgi~~~~~lGR~~~~~~~~~~~~~~~~~~g~~~~~~~~i~GR~~ 395 (919)
T 3iay_A 316 MLSNWRNFIIKVDPDVIIGYNTTNFDIPYLLNRAKALKVNDFPYFGRLKTVKQEIKESVFSSKAYGTRETKNVNIDGRLQ 395 (919)
T ss_dssp HHHHHHHHHHHHCCSEEEESSTTTTHHHHHHHHHHHTTCTTCSCCSSBTTCCCCBCCEEEEETTTEEEEECCBCCTTCEE
T ss_pred HHHHHHHHHHHhCCCEEEecCCccCCHHHHHHHHHHcCCCchhhhccccCccccccccccccccccccccceeEEcCeEE
Confidence 999999988 000 00 136
Q ss_pred eehHHHHHHHhcCCCCCCCHHHHHHHh-CCC--CCCCC-------------------hHHHHHHHHHHHHHH
Q 048020 96 IDSLNLLTERFGRRAGDMKMASLATYF-GLG--QQTHR-------------------SLDDVLMNLEVLKYC 145 (304)
Q Consensus 96 IDTl~Lark~l~p~~~~~kL~~Lak~l-GI~--~~~Hr-------------------AL~DA~aTa~L~~~l 145 (304)
+|++.++++. ..+.+|+|+++|+++ |.. +-+|. .+.||..+.+|+.++
T Consensus 396 lDl~~~~k~~--~~l~sysL~~Va~~~Lg~~K~dv~~~~I~~l~~~~~~~~~~L~~Y~~~Da~l~~~L~~kl 465 (919)
T 3iay_A 396 LDLLQFIQRE--YKLRSYTLNAVSAHFLGEQKEDVHYSIISDLQNGDSETRRRLAVYCLKDAYLPLRLMEKL 465 (919)
T ss_dssp EEHHHHHHHH--CCCSCCCHHHHHHHHHCCC------CCHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred EEhHHHHHhh--cCCCCCCHHHHHHHhcccCCCCCCHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 7999999853 367899999999874 653 21221 156888888888776
No 32
>2hbj_A Exosome complex exonuclease RRP6; RNA metabolism, RNA surveillance, RNA processing, hydrolase, gene regulation; 2.10A {Saccharomyces cerevisiae} SCOP: a.60.8.4 c.55.3.5 PDB: 2hbk_A 2hbl_A* 2hbm_A*
Probab=88.05 E-value=6.1 Score=37.94 Aligned_cols=70 Identities=14% Similarity=0.048 Sum_probs=47.5
Q ss_pred HHHHHHHHHHhcCCCCCCceehHHHHHHHhcCCCCCCCHHHHHHHh-CCC-CCC----------------CChHHHHHHH
Q 048020 77 ADIADTVFDILQAPKPKGTIDSLNLLTERFGRRAGDMKMASLATYF-GLG-QQT----------------HRSLDDVLMN 138 (304)
Q Consensus 77 ~eVl~~f~~fl~~~~~~~~IDTl~Lark~l~p~~~~~kL~~Lak~l-GI~-~~~----------------HrAL~DA~aT 138 (304)
..-+..|....+.... .++||+-.++ ++.+. +++|+.|++.| |+. +.. +-|..||.++
T Consensus 168 k~Dl~~L~~~~Gi~~~-~~fDt~lAa~-LL~~~--~~~L~~L~~~~lg~~l~K~~~~sdW~~rpL~~~q~~YAa~Da~~l 243 (410)
T 2hbj_A 168 FMDIIWLQRDLGLYVV-GLFDTYHASK-AIGLP--RHSLAYLLENFANFKTSKKYQLADWRIRPLSKPMTAAARADTHFL 243 (410)
T ss_dssp HHHHHHHHHHHCCCCS-SEEEHHHHHH-HHTCS--CCSHHHHHHHHSCCCCCCTTTTSCTTCSSCCHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHcCCCcC-CEEEcHHHHH-HhCCC--ccCHHHHHHHHcCCCCCccccccCCCCCCCCHHHHHHHHHHHHHH
Confidence 3334444443444333 4999997666 77764 79999999987 663 111 1156899999
Q ss_pred HHHHHHHHHHhh
Q 048020 139 LEVLKYCATVLL 150 (304)
Q Consensus 139 a~L~~~ll~~l~ 150 (304)
..|+..|.+++.
T Consensus 244 l~L~~~L~~~L~ 255 (410)
T 2hbj_A 244 LNIYDQLRNKLI 255 (410)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999988875
No 33
>3pv8_A DNA polymerase I; DNA polymerase I, protein-DNA complex, thymine-adenine, CLOS conformation; HET: DNA 2DT D3T; 1.52A {Geobacillus kaustophilus} PDB: 3px0_A* 3px4_A* 3px6_A* 3thv_A* 3ti0_A* 4dse_A* 4dsf_A* 4ds4_A* 4dqp_A* 4dqi_A* 4ds5_A* 4e0d_A* 4dqr_A* 4dqq_A* 3tan_A* 3tap_A* 3taq_A* 3tar_A* 4dqs_A* 3hp6_A* ...
Probab=87.59 E-value=1.9 Score=43.70 Aligned_cols=62 Identities=11% Similarity=-0.109 Sum_probs=46.8
Q ss_pred cCCCCCCceehHHHHHHHhcCCCCCCCHHHHHHHh-CCCC--------------------CCCChHHHHHHHHHHHHHHH
Q 048020 88 QAPKPKGTIDSLNLLTERFGRRAGDMKMASLATYF-GLGQ--------------------QTHRSLDDVLMNLEVLKYCA 146 (304)
Q Consensus 88 ~~~~~~~~IDTl~Lark~l~p~~~~~kL~~Lak~l-GI~~--------------------~~HrAL~DA~aTa~L~~~ll 146 (304)
+..+..+++||+-.+. ++.|...+++|++|++.| |... ..+-|..||.++.+++..+.
T Consensus 100 Gi~l~g~~fDTmLAAY-LL~p~~~~~~L~~La~~yLg~~l~~~ee~~gkg~~~~~~~~e~~~~YAa~DA~~l~~L~~~L~ 178 (592)
T 3pv8_A 100 GIELCGVSFDLLLAAY-LLDPAQGVDDVAAAAKMKQYEAVRPDEAVYGKGAKRAVPDEPVLAEHLVRKAAAIWELERPFL 178 (592)
T ss_dssp TCCCCCEEEEHHHHHH-HHCGGGCCCSHHHHHGGGTCCSSCCHHHHHCSGGGCCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCccchHHHHHH-HcCCCCCCCCHHHHHHHHcCCCCchHHHhcCccccccCccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455678999996666 888888889999999976 4320 01336789999999999998
Q ss_pred HHhh
Q 048020 147 TVLL 150 (304)
Q Consensus 147 ~~l~ 150 (304)
+++.
T Consensus 179 ~~L~ 182 (592)
T 3pv8_A 179 DELR 182 (592)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 8774
No 34
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=86.03 E-value=0.7 Score=45.91 Aligned_cols=57 Identities=16% Similarity=0.106 Sum_probs=42.0
Q ss_pred CceehHHHHHHH-hcCCCCCCCHHHHHHHhC-----CC---------------CCCCChHHHHHHHHHHHHHHHHHhh
Q 048020 94 GTIDSLNLLTER-FGRRAGDMKMASLATYFG-----LG---------------QQTHRSLDDVLMNLEVLKYCATVLL 150 (304)
Q Consensus 94 ~~IDTl~Lark~-l~p~~~~~kL~~Lak~lG-----I~---------------~~~HrAL~DA~aTa~L~~~ll~~l~ 150 (304)
.++||.-|+... +.....+..|..|++.++ .+ +..|.|-+||++|+.+|.+|...++
T Consensus 316 ~i~DTK~la~~~~~~~~~~~~~L~~l~~~l~~~~~~~p~i~~~~~~~~y~~~~~~~HeAGyDA~mTg~~F~kl~~~l~ 393 (507)
T 3d45_A 316 RLLDTKLMASTQPFKDIINNTSLAELEKRLKETPFDPPKVESAEGFPSYDTASEQLHEAGYDAYITGLCFISMANYLG 393 (507)
T ss_dssp CEEEHHHHTTSTTHHHHCCCCCHHHHHHHTTSTTCCCCCEEECTTSCCCC----CCCCHHHHHHHHHHHHHHHHHHHC
T ss_pred ceeEhHhhhhcCccccccCCCCHHHHHHHHhccCCCCCeEEecccccccccCCCCcccHHHHHHHHHHHHHHHHHHHh
Confidence 588998776520 111124678999999986 21 2369999999999999999998775
No 35
>2gv9_A DNA polymerase; polymerase alpha fold, transferase; HET: DNA; 2.68A {Human herpesvirus 1} PDB: 1dml_B*
Probab=85.05 E-value=13 Score=40.66 Aligned_cols=50 Identities=16% Similarity=0.196 Sum_probs=34.1
Q ss_pred ceehHHHHHHHhcCCCCCCCHHHHHHH-hCCC--CCCCC-------------------hHHHHHHHHHHHHHHH
Q 048020 95 TIDSLNLLTERFGRRAGDMKMASLATY-FGLG--QQTHR-------------------SLDDVLMNLEVLKYCA 146 (304)
Q Consensus 95 ~IDTl~Lark~l~p~~~~~kL~~Lak~-lGI~--~~~Hr-------------------AL~DA~aTa~L~~~ll 146 (304)
.+|++.++++ . ..+.+|+|+++|++ +|.. +-.+. .+.||..+.+||.+++
T Consensus 480 ~lDl~~~~~~-~-~kl~sYsL~~Va~~~Lg~~K~dv~~~eI~~~~~~~~~~r~~L~~Ycl~Da~lt~~L~~kl~ 551 (1193)
T 2gv9_A 480 NIDMYGIITD-K-IKLSSYKLNAVAEAVLKDKKKDLSYRDIPAYYATGPAQRGVIGEYCIQDSLLVGQLFFKFL 551 (1193)
T ss_dssp EEEHHHHHTT-T-CCCSCCCHHHHHHHTSCCCCCCCCTTTHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred eehHHHHHHH-H-hccCCCCHHHHHHHHhccCCCCCCHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5688887763 2 35789999999986 6663 21211 1468888888888764
No 36
>1s5j_A DNA polymerase I; replication, disulfide bonds, transferase; HET: DNA; 2.40A {Sulfolobus solfataricus} SCOP: c.55.3.5 e.8.1.1
Probab=83.58 E-value=3.1 Score=43.79 Aligned_cols=124 Identities=17% Similarity=0.184 Sum_probs=71.5
Q ss_pred CCcEEEEEEee-cC-----CCC-----ceEEEEEEEEeCCceeeeeeEEEEEcCCCCCCCChHHHHhcCCCHHHHhCCCC
Q 048020 7 RSEIVFFDVET-TF-----PIR-----HIWEFGAILVCPRKLEELDKYTTLVRPADPSLVSNLCARRNDITPEDVFSAPT 75 (304)
Q Consensus 7 ~~~~VvfDlET-TG-----l~~-----~IIEIGAV~v~~g~~~iid~f~~lV~P~~~~~I~~~~~~ltGIT~e~L~~ap~ 75 (304)
.-++++||+|| || +++ .||+||.+ ..+| . +-..+++++.. +... ..|....+...++
T Consensus 189 ~l~ilsfDIEt~s~~~g~fP~~~~~~d~Ii~Is~~-~~~g--~---~~~~~~~~~~~---~~~~---~~i~~~~v~~~~~ 256 (847)
T 1s5j_A 189 KIKRVAIDIEVYTPVKGRIPDSQKAEFPIISIALA-GSDG--L---KKVLVLNRNDV---NEGS---VKLDGISVERFNT 256 (847)
T ss_dssp CCCEEEEEEEECCSSSSCCCCTTTCCSCEEEEEEE-ETTS--C---EEEEEECSSCC---CCCC---EEETTEEEEEESS
T ss_pred CceEEEEEEEeCcCCCCCCCCccccCCcEEEEEEE-ccCC--C---cEEEEEeCCcc---cccc---cCCCCCeEEEeCC
Confidence 45899999999 74 122 79999985 2222 1 12345565431 1111 1122223455678
Q ss_pred HHHHHHHHHHHh--------------------------cC-----CC-----------CCCceehHHHHHH----Hh--c
Q 048020 76 FADIADTVFDIL--------------------------QA-----PK-----------PKGTIDSLNLLTE----RF--G 107 (304)
Q Consensus 76 f~eVl~~f~~fl--------------------------~~-----~~-----------~~~~IDTl~Lark----~l--~ 107 (304)
..+.+.+|.+|+ +. ++ ....+|.+..+++ .+ .
T Consensus 257 E~~LL~~f~~~i~~~diivgyN~~~FDlPyL~~Ra~~lgi~~~~~p~~~~gr~~~~i~gr~~~Dl~~~~~~~~~~~y~f~ 336 (847)
T 1s5j_A 257 EYELLGRFFDILLEYPIVLTFNGDDFDLPYIYFRALKLGYFPEEIPIDVAGKDEAKYLAGLHIDLYKFFFNKAVRNYAFE 336 (847)
T ss_dssp HHHHHHHHHHHHTTCSEEEESSTTTTHHHHHHHHHHTTTCCGGGCSEECCSTTCCEETTSEEEEHHHHHTSHHHHHHTST
T ss_pred HHHHHHHHHHHhccCCEEEEeCCCCchHHHHHHHHHHcCCCcccCCeeecCCCceEeccEEEeehHHHHhhhhhhhhccc
Confidence 999999999999 11 11 1224677665531 11 1
Q ss_pred CCCCCCCHHHHHH-HhCCC-CCCC-------C------hHHHHHHHHHHH
Q 048020 108 RRAGDMKMASLAT-YFGLG-QQTH-------R------SLDDVLMNLEVL 142 (304)
Q Consensus 108 p~~~~~kL~~Lak-~lGI~-~~~H-------r------AL~DA~aTa~L~ 142 (304)
..+.+++|+++|+ .+|.. ...+ + .+.||..|..|+
T Consensus 337 ~kl~sysL~~Va~~~Lg~~K~dv~~~i~~~~~~~l~~Ycl~Da~lt~~L~ 386 (847)
T 1s5j_A 337 GKYNEYNLDAVAKALLGTSKVKVDTLISFLDVEKLIEYNFRDAEITLQLT 386 (847)
T ss_dssp TCCSSCSHHHHHHHHHCCCCC--SSCTTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred cccccccHHHHHHHHhCCCCcchhHhhhhccHHHHHHHHHHHHHHHHHHH
Confidence 2356899999999 56663 1111 1 256999999885
No 37
>2a1r_A Poly(A)-specific ribonuclease PARN; DEDD, nuclease domain, hydrolase-RNA complex; 2.60A {Homo sapiens} PDB: 2a1s_A
Probab=82.45 E-value=2 Score=41.68 Aligned_cols=58 Identities=16% Similarity=0.101 Sum_probs=41.9
Q ss_pred CceehHHHHHHH-hcCCCCCCCHHHHHHHhCC--------------------CCCCCChHHHHHHHHHHHHHHHHHhhh
Q 048020 94 GTIDSLNLLTER-FGRRAGDMKMASLATYFGL--------------------GQQTHRSLDDVLMNLEVLKYCATVLLL 151 (304)
Q Consensus 94 ~~IDTl~Lark~-l~p~~~~~kL~~Lak~lGI--------------------~~~~HrAL~DA~aTa~L~~~ll~~l~l 151 (304)
.++||.-|+... +.....+..|..|.+.+.- .+..|.|-+||++|+.+|.+|...++.
T Consensus 321 ~i~DTK~la~~~~~~~~~~~~sL~~l~~~l~~~~~~~p~i~~~~~~~~y~~~~~~~HeAGyDa~mTG~vFi~l~~~l~~ 399 (430)
T 2a1r_A 321 RLLDTKLMASTQPFKDIINNTSLAELEKRLKETPFNPPKVESAEGFPSYDTASEQLHEAGYDAYITGLCFISMANYLGS 399 (430)
T ss_dssp SEEEHHHHHTSTTTTTTCSCCSHHHHHHHTTSTTCCCCCEEECTTCCCC-----CCCCHHHHHHHHHHHHHHHHHHHGG
T ss_pred ceeehHHhhhccchhhccCCCCHHHHHHHHHhCCCCCCeeecCCCccccccCCCCccchHHHHHHHHHHHHHHHHHHhh
Confidence 589997777521 1122345789999887631 034699999999999999999988763
No 38
>3qex_A DNA polymerase, GP43; difluorotoluene nucleoside; HET: DNA DOC DGT; 1.73A {Enterobacteria phage RB69} PDB: 3qei_A* 3qer_A* 3qes_A* 3qet_A* 3qep_A* 3qew_A* 3qev_A* 3s9h_A* 3sq0_A* 4dtn_A* 4dto_A* 4dtp_A* 4dtr_A* 4dts_A* 4dtu_A* 4dtx_A* 4e3s_A* 4fjm_A* 4fjl_A* 3spz_A* ...
Probab=79.85 E-value=21 Score=37.92 Aligned_cols=50 Identities=10% Similarity=0.109 Sum_probs=35.7
Q ss_pred ceehHHHHHHHhcCCCCCCCHHHHHHHh-CCC-CCCCCh----------------HHHHHHHHHHHHH
Q 048020 95 TIDSLNLLTERFGRRAGDMKMASLATYF-GLG-QQTHRS----------------LDDVLMNLEVLKY 144 (304)
Q Consensus 95 ~IDTl~Lark~l~p~~~~~kL~~Lak~l-GI~-~~~HrA----------------L~DA~aTa~L~~~ 144 (304)
.+|++.++++.-+..+.+++|+.+|+++ |.+ ...|.. +.||..+.+|+.+
T Consensus 270 ~lDl~~~~k~~~~~~l~SYsLd~VA~~lLg~~K~d~~~~I~~~~~~d~~~L~~Ycl~Da~Lt~~L~~K 337 (903)
T 3qex_A 270 VLDYIDLYKKFSFTNQPSYSLDYISEFELNVGKLKYDGPISKLRESNHQRYISYNIIAVYRVLQIDAK 337 (903)
T ss_dssp ECCHHHHHHHHSCCCCSCCCHHHHHHHHHCCCCCCCSSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EeeHHHHHHHhCccCcCCCCHHHHHHHHcCCCccccHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHH
Confidence 6788999985324467899999999976 443 222211 5799999999977
No 39
>3k59_A POL II, DNA polymerase II; protein-DNA complex, DNA damage, DNA repair, DNA-binding; HET: DNA DOC DCP; 1.92A {Escherichia coli} PDB: 3k57_A* 3k58_A* 3k5l_A* 3k5m_A* 3k5n_A* 3k5o_A* 3maq_A* 1q8i_A*
Probab=74.88 E-value=25 Score=36.70 Aligned_cols=50 Identities=16% Similarity=0.329 Sum_probs=35.3
Q ss_pred ceehHHHHHHHhcCCCCCCCHHHHHHHh-CCCCCCCCh----------------------HHHHHHHHHHHHHH
Q 048020 95 TIDSLNLLTERFGRRAGDMKMASLATYF-GLGQQTHRS----------------------LDDVLMNLEVLKYC 145 (304)
Q Consensus 95 ~IDTl~Lark~l~p~~~~~kL~~Lak~l-GI~~~~HrA----------------------L~DA~aTa~L~~~l 145 (304)
.+|.+.+.++.. ..+.+++|+++|+++ |.....|+. +.||..+.+||.++
T Consensus 277 ~lDl~~~lk~~~-~~l~SysL~~Va~~~Lg~~K~~~~~~~~~~eI~~~~~~~~~~L~~Y~l~Da~L~~~L~~kl 349 (786)
T 3k59_A 277 IIDGIEALKSAF-WNFSSFSLETVAQELLGEGKSIDNPWDRMDEIDRRFAEDKPALATYNLKNCELVTQIFHKT 349 (786)
T ss_dssp EEEHHHHHHHTT-CCCSCCSHHHHHHHHHCCCCC-CCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEhHHHHHhcc-CCCCCCCHHHHHHHHhCCCCcccCccccHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHh
Confidence 678888888432 357899999999985 543222321 57888888888774
No 40
>1vk0_A Hypothetical protein; homohexamer, AT5G06450, struc genomics, protein structure initiative, center for eukaryot structural genomics, CESG; 2.10A {Arabidopsis thaliana} SCOP: c.55.3.5 PDB: 2q3s_A
Probab=70.72 E-value=31 Score=29.81 Aligned_cols=70 Identities=13% Similarity=-0.013 Sum_probs=47.3
Q ss_pred HHHHHHHHHHhcCCCCCCceehHHHHHHHhcC-CCCCCCHHHHHHH-hCCCC-----------------CCCChHHHHHH
Q 048020 77 ADIADTVFDILQAPKPKGTIDSLNLLTERFGR-RAGDMKMASLATY-FGLGQ-----------------QTHRSLDDVLM 137 (304)
Q Consensus 77 ~eVl~~f~~fl~~~~~~~~IDTl~Lark~l~p-~~~~~kL~~Lak~-lGI~~-----------------~~HrAL~DA~a 137 (304)
.+-+..|....+. ...+++|+..++...++. ...+.+|..|++. +|++- +-+=|..||++
T Consensus 117 ~~D~~~L~~~~g~-~~~~~~Dl~~la~~~lg~~~~~~~gL~~Lv~~~lg~~lK~k~~~~SdW~~pLs~~Qi~YAA~Da~~ 195 (206)
T 1vk0_A 117 EEDLDLLRENHGL-VIRNAINVGKLAAEARGTLVLEFLGTRELAHRVLWSDLGQLDSIEAKWEKAGPEEQLEAAAIEGWL 195 (206)
T ss_dssp HHHHHHHHHHHCC-CCSSEEEHHHHHHHHHTCGGGGGCCHHHHHHHHHCCCCHHHHHHHHTGGGSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCC-CcCCeeeHHHHHHHHcCCCCCCCccHHHHHHHHhCCcCCCCCcccCCCCCcCCHHHHHHHHHHHHH
Confidence 4444555555543 356899998887645542 2467899999885 56642 22447899999
Q ss_pred HHHHHHHHHH
Q 048020 138 NLEVLKYCAT 147 (304)
Q Consensus 138 Ta~L~~~ll~ 147 (304)
+.+||.++.+
T Consensus 196 l~~l~~~L~~ 205 (206)
T 1vk0_A 196 IVNVWDQLSD 205 (206)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHc
Confidence 9999988754
No 41
>1yt3_A Ribonuclease D, RNAse D; exoribonuclease, exonuclease, hydrolase, tRNA processing, hydrolase,translation; 1.60A {Escherichia coli} SCOP: a.60.8.3 a.60.8.3 c.55.3.5
Probab=61.05 E-value=20 Score=33.58 Aligned_cols=56 Identities=20% Similarity=0.189 Sum_probs=42.0
Q ss_pred CCceehHHHHHHHhcCCCCCCCHHHHHHHh-CCC-CCCC----------C------hHHHHHHHHHHHHHHHHHhh
Q 048020 93 KGTIDSLNLLTERFGRRAGDMKMASLATYF-GLG-QQTH----------R------SLDDVLMNLEVLKYCATVLL 150 (304)
Q Consensus 93 ~~~IDTl~Lark~l~p~~~~~kL~~Lak~l-GI~-~~~H----------r------AL~DA~aTa~L~~~ll~~l~ 150 (304)
..++||+-.++ .+.+ ..+++|+.|++.| |+. ...| . |..||.++..++..+.+++.
T Consensus 98 ~~~fDt~lAa~-lL~~-~~~~~L~~L~~~~l~~~l~K~~~~sdw~~rpL~~~q~~YAa~Da~~l~~L~~~L~~~L~ 171 (375)
T 1yt3_A 98 QPLIDTQILAA-FCGR-PMSWGFASMVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETE 171 (375)
T ss_dssp SSEEEHHHHHH-HTTC-CTTCCHHHHHHHHHCCCCCCTTTTSCTTSSSCCHHHHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred CcEEEcHHHHH-HcCC-CCChhHHHHHHHHcCCCCCCCcccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 38899997776 6766 3579999999976 763 1111 1 56799999999999988774
No 42
>2hpi_A DNA polymerase III alpha subunit; POL-beta-like nucleotidyltransferase fold, transferase; HET: DNA; 3.00A {Thermus aquaticus} PDB: 2hpm_A* 3e0d_A*
Probab=40.10 E-value=2.5 Score=46.45 Aligned_cols=43 Identities=12% Similarity=-0.117 Sum_probs=36.4
Q ss_pred Cceeeec---cCcccc---cccccccccccCcccCCCCccccCCCccce
Q 048020 175 INVRSSP---EGTSQN---LSAPSSKFKFENASNVSPPDQGKEGIHPIF 217 (304)
Q Consensus 175 ~~h~~il---~~glkn---lvs~s~~~yf~~~prip~s~~~~~~~~~~~ 217 (304)
.+|.++| ..|.+| |+|.++++.||..||++++.+.+|.-+-+.
T Consensus 93 ~~hLvlLAkN~~GY~NL~kLiS~a~~~g~~~~Pri~~e~L~~~~eGlI~ 141 (1220)
T 2hpi_A 93 YFHLTLLAKDFTGYQNLVRLASRAYLEGFYEKPRIDREILREHAQGLIA 141 (1220)
T ss_dssp EEEEEEEECSHHHHHHHHHHHHHHHHTCBSSSBEECHHHHHHTCTTEEE
T ss_pred cceEEEEEcCHHHHHHHHHHHHHHHHhcccCCCCCCHHHHHhhcCCcEE
Confidence 4799998 459999 999999999998899999999888655443
No 43
>3cym_A Uncharacterized protein BAD_0989; structural genomics, unknown function; 2.10A {Bifidobacterium adolescentis atcc 1570ORGANISM_TAXID}
Probab=32.73 E-value=61 Score=31.17 Aligned_cols=55 Identities=18% Similarity=0.222 Sum_probs=40.5
Q ss_pred CCceehHHHHHHHhcCCCCCCCHHHHHHHh-CCC--CC---------CCC------hHHHHHHHHHHHHHHHHHhh
Q 048020 93 KGTIDSLNLLTERFGRRAGDMKMASLATYF-GLG--QQ---------THR------SLDDVLMNLEVLKYCATVLL 150 (304)
Q Consensus 93 ~~~IDTl~Lark~l~p~~~~~kL~~Lak~l-GI~--~~---------~Hr------AL~DA~aTa~L~~~ll~~l~ 150 (304)
..++||+ ++..++.+ .+++|+.|++.| |.. .. .-. |..||.++..|+..+.+++.
T Consensus 116 ~~~fDt~-lAa~lL~~--~~~gL~~L~~~~lg~~~~K~~~~sdw~~rpLs~~q~~YAa~Da~~Ll~L~~~L~~~L~ 188 (440)
T 3cym_A 116 QRLFDTE-IAARLLGL--KRFGLAAVTEHFLGLTLAKEHSAADWSYRPLPRDWRNYAALDVELLIELETKMRAELK 188 (440)
T ss_dssp CEEEEHH-HHHHHTTC--SSCSHHHHHHHHHCEECCCCCTTCCTTCSSCCHHHHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred CceehHH-HHHHHhCC--CCCCHHHHHHHHhCCCcccccccCCCcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3899996 55547776 389999999987 651 10 112 67899999999999987774
No 44
>2hnh_A DNA polymerase III alpha subunit; DNA replication, nucleotidyltransferase, beta, PHP, transferase; HET: DNA; 2.30A {Escherichia coli} PDB: 2hqa_A*
Probab=31.31 E-value=5.4 Score=42.48 Aligned_cols=41 Identities=7% Similarity=-0.098 Sum_probs=35.1
Q ss_pred CCceeeec---cCcccc---ccccccccccc-CcccCCCCccccCCCc
Q 048020 174 RINVRSSP---EGTSQN---LSAPSSKFKFE-NASNVSPPDQGKEGIH 214 (304)
Q Consensus 174 r~~h~~il---~~glkn---lvs~s~~~yf~-~~prip~s~~~~~~~~ 214 (304)
+..|.+++ ..|++| |+|.+++++|+ ..||++++.+.+|.-.
T Consensus 80 ~~~hlv~la~n~~g~~nL~~l~s~~~~~~~~~~~p~i~~~~L~~~~~g 127 (910)
T 2hnh_A 80 ELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLIELNEG 127 (910)
T ss_dssp CCEEEEEEECSHHHHHHHHHHHHHHHHHCCCTTCCCEETTHHHHSCTT
T ss_pred ccceEEEEEcCHHHHHHHHHHHHHHHhhccccCCCCCCHHHHHHhCCC
Confidence 46899998 459999 99999999999 8999999999887543
No 45
>1bgx_T TAQ DNA polymerase; DNA polymerase, FAB, PCR, inhibition, helix-coil dynamics, inhibitor design, complex (polymerase/inhibitor); 2.30A {Thermus aquaticus} SCOP: a.60.7.1 c.120.1.2 c.55.3.5 e.8.1.1 PDB: 1cmw_A 1tau_A* 1taq_A*
Probab=26.78 E-value=91 Score=32.70 Aligned_cols=57 Identities=11% Similarity=0.029 Sum_probs=43.3
Q ss_pred cCCCCCCceehHHHHHHHhcCCCCCCCHHHHHHHhCCCC-CCCChHHHHHHHHHHHHHHHHHhh
Q 048020 88 QAPKPKGTIDSLNLLTERFGRRAGDMKMASLATYFGLGQ-QTHRSLDDVLMNLEVLKYCATVLL 150 (304)
Q Consensus 88 ~~~~~~~~IDTl~Lark~l~p~~~~~kL~~Lak~lGI~~-~~HrAL~DA~aTa~L~~~ll~~l~ 150 (304)
+.... .+.||+-.+. ++.|. +++|+.|++.||-.. .. -| .||.+|.+++..+.+++.
T Consensus 364 Gi~~~-~~~Dt~laay-Ll~p~--~~~l~~l~~~~gk~~~~~-ya-~da~~~~~l~~~l~~~L~ 421 (832)
T 1bgx_T 364 GLGLP-PGDDPMLLAY-LLDPS--NTTPEGVARRYGGEWTEE-AG-ERAALSERLFANLWGRLE 421 (832)
T ss_dssp TCCCC-BCCCHHHHHH-HHCTT--CCSTTHHHHHHSCCCCSS-HH-HHHHHHHHHHHHHHHHHT
T ss_pred CCccC-cccCHHHHHH-HcCCC--CCCHHHHHHHhCCCchHH-HH-HHHHHHHHHHHHHHHHHh
Confidence 55555 7899996666 88886 889999999997521 11 23 699999999999987764
Done!