BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 048021
         (143 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2WDW|A Chain A, The Native Crystal Structure Of The Primary Hexose Oxidase
           ( Dbv29) In Antibiotic A40926 Biosynthesis
 pdb|2WDW|B Chain B, The Native Crystal Structure Of The Primary Hexose Oxidase
           ( Dbv29) In Antibiotic A40926 Biosynthesis
 pdb|2WDX|A Chain A, The Complexed Crystal Structure Of The Primary Hexose
           Oxidase (Dbv29) In Antibiotic A40926 Biosynthesis
 pdb|2WDX|B Chain B, The Complexed Crystal Structure Of The Primary Hexose
           Oxidase (Dbv29) In Antibiotic A40926 Biosynthesis
 pdb|2WDX|C Chain C, The Complexed Crystal Structure Of The Primary Hexose
           Oxidase (Dbv29) In Antibiotic A40926 Biosynthesis
 pdb|2WDX|D Chain D, The Complexed Crystal Structure Of The Primary Hexose
           Oxidase (Dbv29) In Antibiotic A40926 Biosynthesis
          Length = 523

 Score = 30.8 bits (68), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 44/144 (30%), Positives = 56/144 (38%), Gaps = 42/144 (29%)

Query: 14  GLKVDTNDPAWFSSMTKVLRKIKGASYTIDAEEGMAYITGRANPRKL------LRKLQSG 67
           G KV+T DPA  +   +            DA   + YITG ANP         +RKL + 
Sbjct: 404 GGKVNTVDPAATALPQR------------DAILKVNYITGWANPGNEAKHLTWVRKLYAD 451

Query: 68  KYANLCWVSAGNQITYGNAYHEGMQMQSPYAYNTRQLQPPGY------WHDHHY--DHPM 119
            YA    V   N ++ G AY           Y    L  PG       WHD +Y  +HP 
Sbjct: 452 VYAETGGVPVPNDVSDG-AY---------INYPDSDLADPGLNTSGVPWHDLYYKGNHPR 501

Query: 120 LHYYPQPRHTMAAYPYHHDYHHWL 143
           L      R   AAY   + +HH L
Sbjct: 502 L------RKVKAAYDPRNHFHHAL 519


>pdb|2ROE|A Chain A, Solution Structure Of Thermus Thermophilus Hb8 Ttha1718
          Protein In Vitro
 pdb|2ROG|A Chain A, Solution Structure Of Thermus Thermophilus Hb8 Ttha1718
          Protein In Living E. Coli Cells
          Length = 66

 Score = 29.3 bits (64), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 13/44 (29%), Positives = 26/44 (59%), Gaps = 1/44 (2%)

Query: 27 SMTKVLRKIKGAS-YTIDAEEGMAYITGRANPRKLLRKLQSGKY 69
          ++TK L+K+ G     +  E+G A + G A+P+ L++ ++   Y
Sbjct: 17 AVTKALKKVPGVEKVEVSLEKGEALVEGTADPKALVQAVEEEGY 60


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.321    0.134    0.455 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,085,315
Number of Sequences: 62578
Number of extensions: 208063
Number of successful extensions: 651
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 648
Number of HSP's gapped (non-prelim): 10
length of query: 143
length of database: 14,973,337
effective HSP length: 89
effective length of query: 54
effective length of database: 9,403,895
effective search space: 507810330
effective search space used: 507810330
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 46 (22.3 bits)