BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 048021
         (143 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|P39936|IF4F2_YEAST Eukaryotic initiation factor 4F subunit p130 OS=Saccharomyces
           cerevisiae (strain ATCC 204508 / S288c) GN=TIF4632 PE=1
           SV=1
          Length = 914

 Score = 31.2 bits (69), Expect = 1.9,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 3/62 (4%)

Query: 76  SAGNQITYGNAYHEGMQMQSPYAYNTRQLQPPGYWHDHHYDHPMLHYYPQPRHTMAAYPY 135
           S GN   Y N ++ G ++ +   YN   L  PG     +Y  P ++Y PQ    +A+ PY
Sbjct: 74  SQGNAQYYNNRFNNGYRLNNN-DYNPAML--PGMQWPANYYAPQMYYIPQQMVPVASPPY 130

Query: 136 HH 137
            H
Sbjct: 131 TH 132


>sp|Q6D237|MLTF_ERWCT Membrane-bound lytic murein transglycosylase F OS=Erwinia
           carotovora subsp. atroseptica (strain SCRI 1043 / ATCC
           BAA-672) GN=mltF PE=3 SV=1
          Length = 481

 Score = 29.3 bits (64), Expect = 8.3,   Method: Compositional matrix adjust.
 Identities = 15/42 (35%), Positives = 22/42 (52%)

Query: 41  TIDAEEGMAYITGRANPRKLLRKLQSGKYANLCWVSAGNQIT 82
           T+D  +G   +T  +     LR L++ KY  L W SA +Q T
Sbjct: 143 TLDKLQGRLVVTSGSAHAATLRDLKAEKYPQLSWESASDQST 184


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.319    0.131    0.436 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 57,673,485
Number of Sequences: 539616
Number of extensions: 2253557
Number of successful extensions: 6289
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 35
Number of HSP's that attempted gapping in prelim test: 5782
Number of HSP's gapped (non-prelim): 334
length of query: 143
length of database: 191,569,459
effective HSP length: 106
effective length of query: 37
effective length of database: 134,370,163
effective search space: 4971696031
effective search space used: 4971696031
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)