Query 048021
Match_columns 143
No_of_seqs 182 out of 1120
Neff 5.0
Searched_HMMs 29240
Date Mon Mar 25 09:15:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048021.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/048021hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3iwl_A Copper transport protei 99.7 3.5E-16 1.2E-20 101.1 9.4 65 11-75 2-67 (68)
2 1cc8_A Protein (metallochapero 99.6 3.3E-15 1.1E-19 96.8 9.7 64 11-74 5-71 (73)
3 2crl_A Copper chaperone for su 99.6 1.7E-14 5.9E-19 100.6 11.0 72 10-81 18-91 (98)
4 4a4j_A Pacszia, cation-transpo 99.6 1.4E-14 4.9E-19 92.2 8.6 63 11-73 2-69 (69)
5 3dxs_X Copper-transporting ATP 99.5 1.6E-13 5.4E-18 88.6 8.9 65 11-75 2-72 (74)
6 2xmm_A SSR2857 protein, ATX1; 99.5 9.5E-14 3.2E-18 85.2 5.9 61 11-71 1-64 (64)
7 3fry_A Probable copper-exporti 99.5 2.1E-13 7E-18 88.9 7.4 64 10-75 4-70 (73)
8 2roe_A Heavy metal binding pro 99.4 3E-13 1E-17 84.9 6.2 61 13-73 2-65 (66)
9 1qup_A Superoxide dismutase 1 99.4 1E-12 3.5E-17 105.1 9.1 73 7-79 2-76 (222)
10 2l3m_A Copper-ION-binding prot 99.4 1.9E-12 6.5E-17 81.2 8.3 63 9-71 3-71 (71)
11 1aw0_A Menkes copper-transport 99.4 2.2E-12 7.4E-17 80.9 8.5 64 10-73 2-71 (72)
12 1fvq_A Copper-transporting ATP 99.4 2.5E-12 8.6E-17 80.6 7.7 64 11-74 2-70 (72)
13 2xmw_A PACS-N, cation-transpor 99.4 7.3E-12 2.5E-16 78.0 9.4 63 11-73 3-70 (71)
14 2k2p_A Uncharacterized protein 99.3 1.2E-12 4E-17 88.9 5.7 63 9-71 20-85 (85)
15 1osd_A MERP, hypothetical prot 99.3 6.6E-12 2.3E-16 78.6 8.5 64 10-73 2-71 (72)
16 1q8l_A Copper-transporting ATP 99.3 5.6E-12 1.9E-16 83.3 8.1 71 5-75 3-79 (84)
17 1cpz_A Protein (COPZ); copper 99.3 9.4E-12 3.2E-16 76.9 8.3 61 13-73 2-68 (68)
18 1kvi_A Copper-transporting ATP 99.3 1.1E-11 3.9E-16 79.7 8.7 67 9-75 6-78 (79)
19 1opz_A Potential copper-transp 99.3 7.5E-12 2.6E-16 78.7 7.6 65 9-73 4-74 (76)
20 3cjk_B Copper-transporting ATP 99.3 2.4E-11 8.1E-16 77.3 9.7 64 12-75 3-72 (75)
21 2kyz_A Heavy metal binding pro 99.3 3.5E-12 1.2E-16 80.4 5.7 60 11-72 1-63 (67)
22 1jk9_B CCS, copper chaperone f 99.3 9.4E-12 3.2E-16 101.3 9.6 71 9-79 5-77 (249)
23 2qif_A Copper chaperone COPZ; 99.3 1.4E-11 4.8E-16 75.2 7.9 61 11-71 2-68 (69)
24 1yg0_A COP associated protein; 99.3 8.8E-12 3E-16 76.6 6.8 60 11-70 1-65 (66)
25 1mwy_A ZNTA; open-faced beta-s 99.3 2.8E-11 9.5E-16 77.0 9.4 62 11-72 3-68 (73)
26 1yjr_A Copper-transporting ATP 99.3 1.3E-11 4.5E-16 77.8 7.6 65 11-75 4-74 (75)
27 2ldi_A Zinc-transporting ATPas 99.3 1.3E-11 4.4E-16 76.3 7.0 62 10-71 2-69 (71)
28 1y3j_A Copper-transporting ATP 99.3 1.4E-11 4.9E-16 79.1 7.4 65 11-75 3-73 (77)
29 2kt2_A Mercuric reductase; nme 99.3 1.7E-11 5.7E-16 76.6 7.3 60 14-73 3-67 (69)
30 2kkh_A Putative heavy metal tr 99.3 6.1E-11 2.1E-15 80.2 10.5 73 9-81 14-92 (95)
31 2g9o_A Copper-transporting ATP 99.2 4.3E-11 1.5E-15 80.9 8.3 67 10-76 2-77 (90)
32 2ofg_X Zinc-transporting ATPas 99.2 1E-10 3.6E-15 82.3 9.4 66 8-73 5-76 (111)
33 2ew9_A Copper-transporting ATP 99.2 8.9E-11 3E-15 83.5 8.4 64 10-73 79-148 (149)
34 1jww_A Potential copper-transp 99.2 7.3E-11 2.5E-15 75.4 6.7 64 11-74 3-72 (80)
35 1p6t_A Potential copper-transp 99.2 7.7E-11 2.6E-15 84.4 7.6 65 11-75 74-144 (151)
36 2aj0_A Probable cadmium-transp 99.2 5.1E-11 1.7E-15 75.5 5.9 62 11-76 3-67 (71)
37 2rop_A Copper-transporting ATP 99.1 1.4E-10 4.7E-15 88.4 8.6 71 11-81 122-198 (202)
38 2ew9_A Copper-transporting ATP 99.0 1.8E-09 6.2E-14 76.7 8.7 65 10-74 3-73 (149)
39 1p6t_A Potential copper-transp 98.8 1E-08 3.5E-13 73.3 7.8 61 10-70 5-71 (151)
40 2rop_A Copper-transporting ATP 98.7 3.9E-08 1.3E-12 74.7 8.1 62 10-71 19-89 (202)
41 3j09_A COPA, copper-exporting 98.6 5.4E-08 1.9E-12 88.4 7.7 62 10-71 1-68 (723)
42 3bpd_A Uncharacterized protein 89.7 2 6.7E-05 30.7 7.8 63 8-70 4-76 (100)
43 3cq1_A Putative uncharacterize 88.9 0.61 2.1E-05 32.1 4.7 34 12-45 42-82 (103)
44 2jsx_A Protein NAPD; TAT, proo 88.5 1.4 4.8E-05 30.6 6.3 45 22-66 16-62 (95)
45 3lno_A Putative uncharacterize 88.0 0.51 1.8E-05 33.0 3.8 34 12-45 45-86 (108)
46 2x3d_A SSO6206; unknown functi 87.4 0.94 3.2E-05 32.2 4.8 60 10-70 4-75 (96)
47 1uwd_A Hypothetical protein TM 86.2 1.1 3.7E-05 30.8 4.6 33 12-44 43-82 (103)
48 4ar0_A Type IV pilus biogenesi 84.1 6.8 0.00023 28.2 8.3 60 10-72 31-94 (128)
49 2cpq_A FragIle X mental retard 83.4 3.1 0.00011 28.8 5.9 66 9-76 13-85 (91)
50 2raq_A Conserved protein MTH88 81.3 2.3 8E-05 30.1 4.6 62 9-70 5-76 (97)
51 1dtj_A RNA-binding neurooncolo 81.2 4.7 0.00016 25.7 5.9 53 11-65 3-67 (76)
52 1j5k_A Heterogeneous nuclear r 80.6 4.6 0.00016 26.9 5.9 53 9-64 12-74 (89)
53 2hh2_A KH-type splicing regula 79.6 2.5 8.6E-05 29.3 4.4 52 12-66 8-72 (107)
54 2p2r_A Poly(RC)-binding protei 79.6 3.3 0.00011 26.6 4.7 54 10-65 4-66 (76)
55 2f06_A Conserved hypothetical 78.4 9.2 0.00031 26.8 7.2 56 14-70 74-135 (144)
56 2opv_A KHSRP protein; KH domai 76.9 12 0.00041 24.5 7.0 54 10-65 13-77 (85)
57 1x4n_A FAR upstream element bi 76.8 13 0.00045 24.7 7.3 51 10-63 14-74 (92)
58 2dgu_A Heterogeneous nuclear r 75.6 7.2 0.00025 25.5 5.6 73 4-78 3-83 (103)
59 2ct6_A SH3 domain-binding glut 74.4 6.1 0.00021 26.9 5.2 36 10-46 7-48 (111)
60 2hh3_A KH-type splicing regula 74.1 6.7 0.00023 27.3 5.3 53 10-65 10-72 (106)
61 1zzk_A Heterogeneous nuclear r 73.3 10 0.00035 24.7 5.8 53 9-64 5-67 (82)
62 2nyt_A Probable C->U-editing e 73.3 6.8 0.00023 30.3 5.7 59 12-75 84-147 (190)
63 1we8_A Tudor and KH domain con 73.2 5.3 0.00018 27.4 4.6 46 9-55 13-70 (104)
64 2e3u_A PH-DIM2P, hypothetical 71.8 4.6 0.00016 31.8 4.5 58 8-65 31-95 (219)
65 1wvn_A Poly(RC)-binding protei 70.1 10 0.00036 24.6 5.3 53 9-64 4-66 (82)
66 2dgt_A RNA-binding protein 30; 69.6 16 0.00056 23.1 6.2 71 5-77 3-81 (92)
67 2cuy_A Malonyl COA-[acyl carri 68.5 10 0.00035 30.4 5.9 52 25-76 137-190 (305)
68 2w7v_A General secretion pathw 68.4 10 0.00035 26.4 5.2 51 26-76 15-72 (95)
69 1tua_A Hypothetical protein AP 67.2 5.7 0.00019 30.8 4.0 57 14-70 7-76 (191)
70 2ctf_A Vigilin; K homology typ 66.6 11 0.00039 25.9 5.1 29 26-54 47-75 (102)
71 1x4m_A FAR upstream element bi 65.5 7.1 0.00024 26.2 3.8 44 11-54 15-69 (94)
72 2jzx_A Poly(RC)-binding protei 64.6 9.3 0.00032 27.4 4.5 55 9-65 87-151 (160)
73 2kgs_A Uncharacterized protein 63.3 3.2 0.00011 29.9 1.8 35 23-58 62-97 (132)
74 3gkx_A Putative ARSC family re 63.1 8.6 0.0003 26.9 4.0 52 11-70 4-57 (120)
75 1ec6_A RNA-binding protein NOV 62.9 11 0.00038 24.7 4.4 50 12-64 4-66 (87)
76 2axy_A Poly(RC)-binding protei 60.7 28 0.00095 22.1 5.9 54 9-65 3-64 (73)
77 1v95_A Nuclear receptor coacti 60.6 7.7 0.00026 28.4 3.5 42 3-45 2-43 (130)
78 3tzy_A Polyketide synthase PKS 60.5 16 0.00054 31.7 6.0 55 24-78 280-336 (491)
79 2z51_A NIFU-like protein 2, ch 59.8 18 0.00063 27.0 5.5 63 12-77 36-116 (154)
80 1xhj_A Nitrogen fixation prote 58.5 15 0.00052 25.1 4.5 30 12-41 39-77 (88)
81 2cte_A Vigilin; K homology typ 58.3 11 0.00037 25.4 3.7 53 10-65 16-76 (94)
82 2h1y_A Malonyl coenzyme A-acyl 58.1 13 0.00044 30.3 4.7 53 25-77 152-207 (321)
83 2lxf_A Uncharacterized protein 56.6 52 0.0018 23.6 7.8 61 6-67 29-95 (121)
84 3krm_A Insulin-like growth fac 54.7 52 0.0018 23.3 7.2 54 8-64 82-147 (163)
85 1j4w_A FUSE binding protein; s 53.9 33 0.0011 24.8 6.0 52 11-65 104-168 (174)
86 2ko1_A CTR148A, GTP pyrophosph 52.9 28 0.00096 21.6 4.9 26 13-38 47-72 (88)
87 2qc3_A MCT, malonyl COA-acyl c 52.9 14 0.00047 29.6 4.1 51 25-77 140-192 (303)
88 1r7h_A NRDH-redoxin; thioredox 52.6 20 0.00069 21.2 4.0 27 18-46 8-35 (75)
89 1v5t_A 8430435I17RIK protein; 52.5 25 0.00084 23.0 4.7 68 6-77 3-84 (90)
90 2cpj_A Non-POU domain-containi 52.4 43 0.0015 21.4 7.5 67 14-80 17-91 (99)
91 1wjk_A C330018D20RIK protein; 52.1 47 0.0016 21.7 7.4 33 12-45 18-52 (100)
92 3qmx_A Glutaredoxin A, glutare 52.0 20 0.00068 23.8 4.2 34 11-46 16-50 (99)
93 2cqc_A Arginine/serine-rich sp 50.1 27 0.00092 21.9 4.5 55 11-66 14-76 (95)
94 1h75_A Glutaredoxin-like prote 49.5 23 0.00079 21.5 4.0 26 19-46 9-35 (81)
95 2hc5_A ORF 99, hypothetical pr 48.3 31 0.0011 24.7 4.9 41 26-66 45-96 (117)
96 2hiy_A Hypothetical protein; C 47.4 35 0.0012 25.8 5.4 48 25-73 24-78 (183)
97 1lu4_A Soluble secreted antige 47.1 55 0.0019 21.0 6.7 48 18-74 33-85 (136)
98 2dgw_A Probable RNA-binding pr 46.4 49 0.0017 20.6 5.3 71 4-75 2-84 (91)
99 3lvj_C Sulfurtransferase TUSA; 45.9 59 0.002 21.0 6.8 53 13-73 11-67 (82)
100 3q9p_A Heat shock protein beta 45.6 14 0.00049 24.2 2.6 24 34-57 14-40 (85)
101 1t1v_A SH3BGRL3, SH3 domain-bi 45.4 29 0.00098 22.3 4.1 33 13-46 4-42 (93)
102 2e9h_A EIF-5, eukaryotic trans 45.2 25 0.00085 26.6 4.2 30 37-66 69-98 (157)
103 2fwh_A Thiol:disulfide interch 45.0 20 0.00067 24.2 3.4 61 13-79 34-103 (134)
104 3vow_A Probable DNA DC->DU-edi 44.6 15 0.00052 28.7 3.0 48 20-76 96-151 (190)
105 1x5s_A Cold-inducible RNA-bind 44.5 59 0.002 20.7 6.9 72 5-77 5-91 (102)
106 1mla_A Malonyl-coenzyme A acyl 44.0 41 0.0014 26.8 5.6 52 25-76 140-197 (309)
107 2qn6_B Translation initiation 43.7 75 0.0026 21.6 6.3 25 11-35 4-30 (93)
108 2dt9_A Aspartokinase; protein- 43.3 88 0.003 22.4 6.9 65 10-75 59-131 (167)
109 1v6f_A MGMF-beta, GLIA maturat 42.1 25 0.00085 25.4 3.7 70 3-75 2-79 (151)
110 1nm2_A Malonyl COA:acyl carrie 42.0 18 0.00062 29.1 3.2 51 25-76 146-198 (317)
111 2jsx_A Protein NAPD; TAT, proo 41.9 47 0.0016 22.6 4.9 31 12-42 43-74 (95)
112 1vbk_A Hypothetical protein PH 41.9 28 0.00096 28.1 4.3 41 24-66 26-67 (307)
113 2y3m_A Emhofq, protein transpo 41.8 48 0.0016 24.0 5.2 48 24-71 16-67 (175)
114 1x5u_A Splicing factor 3B subu 41.3 65 0.0022 20.6 5.4 68 11-79 14-96 (105)
115 2j58_A WZA, outer membrane lip 40.9 30 0.001 28.8 4.4 52 15-66 114-180 (359)
116 2cq3_A RNA-binding protein 9; 40.6 69 0.0024 20.4 7.8 66 10-76 13-91 (103)
117 2y1y_A Alpha-crystallin B chai 40.5 16 0.00056 24.0 2.3 22 34-55 13-37 (90)
118 1in0_A YAJQ protein, HI1034; a 40.0 42 0.0014 25.6 4.7 53 13-66 94-149 (163)
119 1je3_A EC005, hypothetical 8.6 40.0 82 0.0028 21.4 5.9 56 11-74 24-85 (97)
120 3v4k_A DNA DC->DU-editing enzy 40.0 20 0.00067 28.3 3.0 54 20-76 110-164 (203)
121 3ptw_A Malonyl COA-acyl carrie 39.9 51 0.0018 26.7 5.6 53 25-77 139-196 (336)
122 1qd1_A Formiminotransferase-cy 39.7 97 0.0033 26.0 7.3 64 13-76 6-75 (325)
123 3f0i_A Arsenate reductase; str 39.7 14 0.00048 25.8 1.9 51 11-69 4-56 (119)
124 1aba_A Glutaredoxin; electron 39.6 68 0.0023 20.0 5.4 44 20-69 13-58 (87)
125 1ttz_A Conserved hypothetical 39.3 77 0.0026 20.5 6.8 17 19-36 9-25 (87)
126 3rdw_A Putative arsenate reduc 39.1 37 0.0013 23.6 4.1 45 18-70 12-59 (121)
127 1jdq_A TM006 protein, hypothet 39.1 88 0.003 21.2 6.2 48 19-74 34-84 (98)
128 4amm_A DYNE8; transferase; 1.4 39.1 60 0.002 27.0 6.0 53 24-77 221-275 (401)
129 3h5j_A 3-isopropylmalate dehyd 38.1 29 0.00098 26.6 3.6 31 23-53 121-151 (171)
130 2y3m_A Emhofq, protein transpo 37.9 56 0.0019 23.6 5.1 42 25-66 117-165 (175)
131 2rdo_7 EF-G, elongation factor 37.7 81 0.0028 28.3 7.0 60 12-71 415-482 (704)
132 3q3w_A 3-isopropylmalate dehyd 37.6 29 0.00098 27.3 3.6 48 24-71 130-181 (203)
133 2f06_A Conserved hypothetical 37.5 99 0.0034 21.3 9.5 60 10-71 4-70 (144)
134 3fz4_A Putative arsenate reduc 37.1 48 0.0016 23.0 4.4 46 18-71 10-57 (120)
135 3gr5_A ESCC; secretin, type II 37.0 70 0.0024 23.4 5.5 47 24-70 24-74 (156)
136 1nkw_F 50S ribosomal protein L 36.9 37 0.0013 25.1 3.9 44 33-76 69-113 (146)
137 1nho_A Probable thioredoxin; b 36.5 25 0.00086 21.0 2.5 28 19-46 11-43 (85)
138 2wj5_A Heat shock protein beta 36.1 21 0.00071 24.1 2.3 22 34-55 18-42 (101)
139 2cqb_A Peptidyl-prolyl CIS-tra 36.1 78 0.0027 20.0 5.1 65 12-77 12-91 (102)
140 3gla_A Low molecular weight he 36.1 16 0.00056 24.1 1.7 23 34-56 21-46 (100)
141 3pro_C Alpha-lytic protease; P 36.0 42 0.0014 25.3 4.2 40 36-75 114-159 (166)
142 2cqi_A Nucleolysin TIAR; RNA r 35.8 84 0.0029 20.0 6.9 66 12-78 15-93 (103)
143 3im9_A MCAT, MCT, malonyl COA- 35.8 56 0.0019 26.0 5.2 52 25-76 145-203 (316)
144 1j4w_A FUSE binding protein; s 35.6 89 0.003 22.4 5.9 42 12-54 4-55 (174)
145 3sbm_A DISD protein, DSZD; tra 35.6 53 0.0018 25.6 4.9 53 24-76 130-187 (281)
146 2lqo_A Putative glutaredoxin R 35.4 45 0.0015 22.1 3.9 26 18-45 11-37 (92)
147 1fo5_A Thioredoxin; disulfide 35.2 20 0.0007 21.4 2.0 29 18-46 11-44 (85)
148 4fei_A Heat shock protein-rela 34.5 18 0.00062 24.3 1.8 23 34-56 23-48 (102)
149 1zzo_A RV1677; thioredoxin fol 34.2 55 0.0019 20.9 4.1 32 35-66 99-132 (136)
150 2dzi_A Ubiquitin-like protein 33.0 66 0.0023 19.6 4.2 14 24-37 29-42 (81)
151 2dnp_A RNA-binding protein 14; 33.0 89 0.003 19.4 5.9 65 13-77 10-80 (90)
152 3l1e_A Alpha-crystallin A chai 32.9 25 0.00085 23.9 2.3 22 34-55 19-43 (106)
153 2ctk_A Vigilin; K homology typ 32.9 72 0.0025 21.7 4.7 53 10-65 16-76 (104)
154 2jvz_A KH type-splicing, FAR u 32.7 1.3E+02 0.0043 21.1 7.3 51 12-65 3-65 (164)
155 2d74_B Translation initiation 32.6 41 0.0014 25.0 3.6 35 30-66 65-99 (148)
156 4eld_A MJ16.5-P1, small heat s 32.6 25 0.00085 25.6 2.3 24 33-56 72-98 (161)
157 2err_A Ataxin-2-binding protei 32.5 1E+02 0.0036 20.1 6.3 59 6-65 23-87 (109)
158 2fi0_A Conserved domain protei 32.4 24 0.00084 23.1 2.1 17 55-71 61-78 (81)
159 3qat_A Malonyl COA-acyl carrie 32.2 1E+02 0.0034 24.5 6.1 53 25-77 146-204 (318)
160 2l5l_A Thioredoxin; structural 32.0 49 0.0017 22.1 3.7 9 19-27 48-56 (136)
161 1u6t_A SH3 domain-binding glut 31.9 64 0.0022 22.9 4.4 28 17-45 6-39 (121)
162 2g2k_A EIF-5, eukaryotic trans 31.8 36 0.0012 26.0 3.2 30 37-66 62-91 (170)
163 2v50_A Multidrug resistance pr 31.7 32 0.0011 32.1 3.5 49 25-73 159-219 (1052)
164 2y9k_A Protein INVG; protein t 31.7 48 0.0016 23.4 3.7 46 26-71 10-60 (137)
165 2dgo_A Cytotoxic granule-assoc 31.7 1.1E+02 0.0036 19.9 6.1 65 12-77 15-94 (115)
166 3msz_A Glutaredoxin 1; alpha-b 31.6 35 0.0012 20.8 2.7 26 11-38 4-29 (89)
167 3ha9_A Uncharacterized thiored 31.5 1E+02 0.0036 20.7 5.4 37 28-66 122-161 (165)
168 1owx_A Lupus LA protein, SS-B, 31.5 1.2E+02 0.0041 21.4 5.8 53 12-64 18-76 (121)
169 2dnq_A RNA-binding protein 4B; 30.8 97 0.0033 19.2 7.2 61 14-77 10-79 (90)
170 2dy1_A Elongation factor G; tr 30.7 1E+02 0.0034 27.4 6.4 63 12-74 382-451 (665)
171 4e9j_A General secretion pathw 30.4 1.5E+02 0.0051 22.7 6.7 54 25-78 125-186 (246)
172 3ll7_A Putative methyltransfer 30.3 47 0.0016 28.2 4.0 60 10-78 335-397 (410)
173 4dx5_A Acriflavine resistance 30.2 55 0.0019 30.4 4.8 42 25-66 159-209 (1057)
174 2joe_A Hypothetical lipoprotei 30.0 35 0.0012 25.0 2.8 36 28-63 59-99 (139)
175 2wem_A Glutaredoxin-related pr 30.0 1.1E+02 0.0038 20.9 5.4 24 20-45 34-59 (118)
176 3g87_A Malonyl COA-acyl carrie 29.8 46 0.0016 27.9 3.8 54 24-77 136-193 (394)
177 2kgs_A Uncharacterized protein 29.8 42 0.0014 23.9 3.1 30 40-69 10-45 (132)
178 2wci_A Glutaredoxin-4; redox-a 29.8 85 0.0029 22.2 4.8 25 19-45 48-73 (135)
179 1ego_A Glutaredoxin; electron 29.8 48 0.0016 20.0 3.1 25 19-44 9-38 (85)
180 3gv1_A Disulfide interchange p 29.7 82 0.0028 22.4 4.7 28 11-39 16-43 (147)
181 3ezo_A Malonyl COA-acyl carrie 29.6 87 0.003 25.0 5.4 53 25-77 146-204 (318)
182 3ady_A DOTD; 3-layer(BAB) sand 29.4 59 0.002 24.3 4.0 36 46-81 65-102 (148)
183 2fgx_A Putative thioredoxin; N 29.1 93 0.0032 21.3 4.8 28 18-46 37-68 (107)
184 1fov_A Glutaredoxin 3, GRX3; a 29.0 74 0.0025 18.9 3.9 26 18-45 8-34 (82)
185 3im8_A Malonyl acyl carrier pr 28.8 77 0.0026 25.1 4.9 53 25-77 138-196 (307)
186 3kcm_A Thioredoxin family prot 28.8 1.3E+02 0.0043 19.9 6.7 48 18-73 37-91 (154)
187 2xex_A Elongation factor G; GT 28.8 86 0.0029 28.0 5.6 61 12-72 407-475 (693)
188 3oss_D Type 2 secretion system 28.6 49 0.0017 24.8 3.5 50 23-72 16-73 (181)
189 3mso_A Steroid delta-isomerase 28.6 33 0.0011 24.1 2.4 33 34-66 95-128 (143)
190 1zpv_A ACT domain protein; str 28.6 1.1E+02 0.0038 19.1 6.8 57 10-66 3-68 (91)
191 3flj_A Uncharacterized protein 28.5 31 0.001 25.5 2.3 33 34-66 102-135 (155)
192 1hfe_L Protein (Fe-only hydrog 28.5 66 0.0023 27.0 4.6 45 33-77 328-380 (421)
193 2hg4_A DEBS, 6-deoxyerythronol 28.0 1.2E+02 0.0042 28.1 6.7 53 25-77 687-742 (917)
194 2go8_A Hypothetical protein YQ 28.0 1.6E+02 0.0055 20.8 8.8 65 2-66 5-77 (122)
195 3u1k_A Polyribonucleotide nucl 28.0 63 0.0021 29.2 4.6 58 7-66 563-624 (630)
196 3trg_A Acylphosphatase; fatty 27.9 1.1E+02 0.0036 20.7 4.8 64 11-75 12-82 (98)
197 2qip_A Protein of unknown func 27.9 30 0.001 25.1 2.1 32 46-77 110-143 (165)
198 3erw_A Sporulation thiol-disul 27.8 1.2E+02 0.0042 19.4 6.5 51 18-74 43-100 (145)
199 2kyy_A Possible ATP-dependent 27.7 1.1E+02 0.0037 21.8 5.2 23 119-141 131-153 (153)
200 3enc_A Protein PCC1; dimerizat 27.7 1.4E+02 0.0049 20.1 6.4 54 11-64 11-71 (87)
201 2c5s_A THII, probable thiamine 27.6 70 0.0024 26.7 4.6 41 24-66 37-78 (413)
202 2ctj_A Vigilin; K homology typ 27.5 55 0.0019 22.1 3.3 45 10-54 16-68 (95)
203 3h8q_A Thioredoxin reductase 3 27.4 1.4E+02 0.0046 19.8 5.4 48 13-69 19-69 (114)
204 4e6k_G BFD, bacterioferritin-a 27.1 27 0.00091 22.9 1.5 17 19-35 36-52 (73)
205 3o6p_A Peptide ABC transporter 27.0 1.2E+02 0.0041 22.0 5.4 44 22-75 112-157 (229)
206 1vig_A Vigilin; RNA-binding pr 26.9 66 0.0022 20.2 3.4 54 9-65 3-64 (71)
207 3hxs_A Thioredoxin, TRXP; elec 26.9 69 0.0024 21.2 3.7 55 13-77 54-115 (141)
208 2jvz_A KH type-splicing, FAR u 26.9 69 0.0024 22.5 3.9 51 12-64 92-151 (164)
209 1v58_A Thiol:disulfide interch 26.9 1.1E+02 0.0037 23.2 5.2 45 22-66 179-230 (241)
210 3b47_A GSU0582, methyl-accepti 26.8 99 0.0034 21.7 4.7 48 26-73 35-84 (134)
211 2dgr_A Ring finger and KH doma 26.7 1.3E+02 0.0045 19.6 5.0 51 4-55 3-60 (83)
212 2yqr_A KIAA0907 protein; struc 26.6 1.7E+02 0.0058 20.6 6.5 61 3-65 2-91 (119)
213 4e9j_A General secretion pathw 26.6 75 0.0026 24.5 4.3 49 23-71 29-85 (246)
214 3k89_A Malonyl COA-ACP transac 26.5 1.3E+02 0.0045 23.8 5.9 53 25-77 142-200 (314)
215 2anr_A Neuro-oncological ventr 26.5 94 0.0032 22.3 4.6 52 11-65 104-167 (178)
216 1yz7_A Probable translation in 26.5 1.9E+02 0.0066 22.0 6.6 26 9-34 87-114 (188)
217 3mvn_A UDP-N-acetylmuramate:L- 26.4 61 0.0021 23.2 3.5 42 23-64 9-54 (163)
218 2e5h_A Zinc finger CCHC-type a 26.4 84 0.0029 19.5 3.9 53 13-66 17-77 (94)
219 2jzx_A Poly(RC)-binding protei 26.4 1.7E+02 0.0057 20.5 6.2 44 10-54 4-55 (160)
220 2yvs_A Glycolate oxidase subun 26.3 50 0.0017 25.4 3.2 30 40-69 1-31 (219)
221 2lxa_A Ubiquitin-like protein 26.3 38 0.0013 22.5 2.2 65 12-80 13-82 (87)
222 2dgs_A DAZ-associated protein 26.2 1.2E+02 0.0043 18.9 7.6 73 5-78 3-89 (99)
223 1nwa_A Peptide methionine sulf 26.1 91 0.0031 24.4 4.7 28 11-43 26-54 (203)
224 2dgx_A KIAA0430 protein; RRM d 26.0 1.3E+02 0.0044 19.0 7.0 63 13-76 10-88 (96)
225 4go7_X Aspartokinase; transfer 26.0 1.7E+02 0.0058 22.3 6.2 66 10-75 78-151 (200)
226 4dgh_A Sulfate permease family 26.0 49 0.0017 22.4 2.8 68 9-77 18-91 (130)
227 2dtj_A Aspartokinase; protein- 25.7 1.1E+02 0.0036 22.4 4.8 61 11-74 59-130 (178)
228 2cvi_A 75AA long hypothetical 25.5 1.3E+02 0.0043 18.8 8.0 51 14-65 5-57 (83)
229 3oss_D Type 2 secretion system 25.5 1.7E+02 0.0059 21.7 6.1 56 10-65 119-176 (181)
230 1wik_A Thioredoxin-like protei 25.3 94 0.0032 20.3 4.1 26 19-46 28-54 (109)
231 3tqe_A Malonyl-COA-[acyl-carri 25.3 1.1E+02 0.0038 24.3 5.2 53 25-77 144-202 (316)
232 2h9z_A Hypothetical protein HP 25.3 1.3E+02 0.0043 19.9 4.8 35 5-39 49-83 (86)
233 2khp_A Glutaredoxin; thioredox 24.8 97 0.0033 19.1 4.0 26 18-45 13-39 (92)
234 1s3c_A Arsenate reductase; ARS 24.7 78 0.0027 22.6 3.8 44 19-70 10-55 (141)
235 3aab_A Putative uncharacterize 24.5 34 0.0012 23.6 1.8 24 34-57 41-68 (123)
236 3r8s_H 50S ribosomal protein L 24.4 1.8E+02 0.006 21.3 5.8 36 34-71 71-111 (149)
237 3gyk_A 27KDA outer membrane pr 24.4 1.4E+02 0.0047 20.6 5.1 29 11-39 24-55 (175)
238 4gwb_A Peptide methionine sulf 24.4 82 0.0028 23.9 4.0 28 11-43 3-31 (168)
239 2ctm_A Vigilin; K homology typ 24.4 74 0.0025 21.3 3.4 52 11-65 17-77 (95)
240 3ipz_A Monothiol glutaredoxin- 24.3 1.4E+02 0.0047 19.7 4.9 24 20-45 32-56 (109)
241 2klr_A Alpha-crystallin B chai 24.2 41 0.0014 25.2 2.3 22 34-55 80-104 (175)
242 2kxn_B Transformer-2 protein h 24.0 1E+02 0.0035 21.0 4.3 52 13-65 47-106 (129)
243 3ewl_A Uncharacterized conserv 24.0 1.5E+02 0.0052 19.2 7.2 47 18-74 36-93 (142)
244 3ktw_A SRP19, signal recogniti 24.0 1.3E+02 0.0043 21.4 4.7 40 26-66 47-95 (109)
245 3l4n_A Monothiol glutaredoxin- 23.8 90 0.0031 21.8 4.0 22 13-35 16-37 (127)
246 4fn5_A EF-G 1, elongation fact 23.7 1.5E+02 0.0052 26.4 6.3 59 12-70 418-484 (709)
247 3e3x_A BIPA; MCSG,PSI2, struct 23.7 1.9E+02 0.0063 24.1 6.4 49 25-73 55-110 (332)
248 2yy3_A Elongation factor 1-bet 23.3 1.4E+02 0.0047 20.4 4.7 25 19-43 59-86 (91)
249 3oiz_A Antisigma-factor antago 23.2 59 0.002 21.3 2.7 65 11-77 16-86 (99)
250 1wf1_A RNA-binding protein RAL 23.2 1.3E+02 0.0046 19.3 4.6 62 13-76 28-98 (110)
251 1x4a_A Splicing factor, argini 23.1 1.5E+02 0.0053 18.9 6.3 52 13-65 23-79 (109)
252 3gn3_A Putative protein-disulf 22.9 84 0.0029 23.0 3.8 27 9-35 14-43 (182)
253 2kok_A Arsenate reductase; bru 22.9 36 0.0012 23.3 1.6 49 11-67 5-55 (120)
254 3ctg_A Glutaredoxin-2; reduced 22.6 1.6E+02 0.0056 20.1 5.1 23 13-35 39-61 (129)
255 1ilo_A Conserved hypothetical 22.6 55 0.0019 19.2 2.3 41 20-73 10-56 (77)
256 1wg1_A KIAA1579 protein, homol 22.5 1.1E+02 0.0036 19.0 3.8 57 18-76 12-76 (88)
257 2y9k_A Protein INVG; protein t 22.4 1.2E+02 0.0041 21.2 4.4 42 23-64 84-130 (137)
258 2g2q_A Glutaredoxin-2; thiored 22.4 32 0.0011 25.2 1.3 55 20-75 12-75 (124)
259 2asb_A Transcription elongatio 22.4 28 0.00096 28.2 1.1 46 25-72 161-208 (251)
260 4av2_A PILQ, type IV pilus bio 22.3 1.3E+02 0.0045 27.3 5.7 49 23-71 331-383 (745)
261 3tsh_A Pollen allergen PHL P 4 22.2 64 0.0022 27.4 3.4 32 40-71 112-144 (500)
262 4e1r_A Protein LSR2; anti-para 22.2 28 0.00094 24.1 0.9 27 40-66 48-75 (86)
263 3l78_A Regulatory protein SPX; 22.2 1.9E+02 0.0065 19.6 5.7 45 18-70 7-53 (120)
264 2lst_A Thioredoxin; structural 27.7 19 0.00064 23.7 0.0 10 19-28 29-38 (130)
265 3d7a_A UPF0201 protein PH1010; 22.1 1.3E+02 0.0045 21.6 4.7 55 12-66 7-66 (138)
266 1x60_A Sporulation-specific N- 22.0 1.2E+02 0.004 18.8 3.9 62 12-74 9-77 (79)
267 3or5_A Thiol:disulfide interch 22.0 1.8E+02 0.0061 19.2 5.7 33 34-66 113-148 (165)
268 1th5_A NIFU1; iron-sulfur clus 21.9 35 0.0012 22.4 1.3 30 12-41 37-71 (74)
269 2ks0_A Uncharacterized protein 21.7 35 0.0012 22.5 1.3 15 41-55 43-57 (71)
270 1hqz_1 ABP1P, actin-binding pr 21.6 36 0.0012 24.0 1.4 40 19-66 97-137 (141)
271 2hcu_A 3-isopropylmalate dehyd 21.4 1.7E+02 0.0058 22.9 5.5 38 35-72 151-192 (213)
272 3qfa_C Thioredoxin; protein-pr 21.4 1.7E+02 0.0058 18.7 6.1 52 13-74 34-91 (116)
273 2la4_A Nuclear and cytoplasmic 21.4 1.6E+02 0.0055 18.5 5.2 53 13-66 28-82 (101)
274 2yan_A Glutaredoxin-3; oxidore 21.3 85 0.0029 20.3 3.2 26 19-46 30-56 (105)
275 2zzt_A Putative uncharacterize 21.3 1.5E+02 0.0051 19.8 4.5 28 25-52 12-43 (107)
276 3tr5_A RF-3, peptide chain rel 21.2 2.9E+02 0.0098 23.8 7.4 62 14-75 397-465 (528)
277 3hz7_A Uncharacterized protein 21.0 61 0.0021 21.4 2.4 47 19-74 9-60 (87)
278 2k1h_A Uncharacterized protein 21.0 98 0.0033 21.2 3.5 38 27-66 40-80 (94)
279 3k8g_A 30KLP; outmer membrane 21.0 1.1E+02 0.0037 24.9 4.3 53 12-66 201-254 (262)
280 3ezj_A General secretion pathw 20.9 2.8E+02 0.0094 21.0 7.7 69 10-78 107-182 (241)
281 4e1p_A Protein LSR2; anti-para 20.8 31 0.0011 22.2 0.9 12 55-66 39-50 (61)
282 1whx_A Hypothetical protein ri 20.7 1.9E+02 0.0064 18.9 6.1 68 8-75 6-81 (111)
283 3ne5_A Cation efflux system pr 20.7 1.2E+02 0.0041 28.2 5.1 50 22-71 701-764 (1054)
284 2bvf_A 6-hydroxy-D-nicotine ox 20.6 81 0.0028 26.4 3.6 30 40-69 94-124 (459)
285 1uta_A FTSN, MSGA, cell divisi 20.6 1.1E+02 0.0037 19.3 3.6 55 20-75 18-78 (81)
286 3qfm_A SAPH, putative uncharac 20.5 61 0.0021 25.1 2.7 55 5-67 6-66 (270)
287 1rw1_A Conserved hypothetical 20.5 1E+02 0.0035 20.7 3.6 42 18-67 7-50 (114)
288 3zyw_A Glutaredoxin-3; metal b 20.4 97 0.0033 20.8 3.5 25 19-45 29-54 (111)
289 2o5a_A BH1328 protein; BHR21, 20.4 2.3E+02 0.008 20.1 5.6 48 22-69 4-65 (125)
290 1gme_A Heat shock protein 16.9 20.3 64 0.0022 23.2 2.6 23 33-55 59-85 (151)
291 3v2d_I 50S ribosomal protein L 20.3 50 0.0017 24.3 2.0 46 30-75 67-114 (148)
292 1psq_A Probable thiol peroxida 20.2 2.1E+02 0.0073 19.4 5.5 53 12-74 44-104 (163)
293 2nwu_A UPF0201 protein SSO1042 20.0 1.7E+02 0.0057 21.7 4.9 56 11-66 4-64 (155)
No 1
>3iwl_A Copper transport protein ATOX1; beta-alpha-beta-BETA-alpha-beta, cisplatin, platinum, chaperone, ION transport, metal-binding, metal transport; HET: TCE; 1.60A {Homo sapiens} SCOP: d.58.17.1 PDB: 1fe4_A* 1fee_A* 1tl4_A 1tl5_A 2k1r_B 1fe0_A* 3iwx_A 3cjk_A
Probab=99.67 E-value=3.5e-16 Score=101.10 Aligned_cols=65 Identities=23% Similarity=0.298 Sum_probs=61.8
Q ss_pred eEEEEEEeecChhhHHHHHHHHhccCCeeEEEeCCCCEEEEEeecCHHHHHHHHhc-CCceEEeec
Q 048021 11 MTCGLKVDTNDPAWFSSMTKVLRKIKGASYTIDAEEGMAYITGRANPRKLLRKLQS-GKYANLCWV 75 (143)
Q Consensus 11 ~tvvlkV~m~C~gC~~kIkkaL~kI~GVsV~VDle~~~VtV~G~vdp~~Ll~aI~k-Gk~Ael~~~ 75 (143)
++.+|+|.|+|.+|+++|+++|++++||++.+|+.+++++|.+.++++.|+++|++ ||++++++.
T Consensus 2 ~~~~~~vgm~C~~C~~~i~~~l~~~~gV~v~v~~~~~~~~v~~~~~~~~i~~~i~~~Gy~~~~~~~ 67 (68)
T 3iwl_A 2 PKHEFSVDMTCGGCAEAVSRVLNKLGGVKYDIDLPNKKVCIESEHSMDTLLATLKKTGKTVSYLGL 67 (68)
T ss_dssp CEEEEEECCCSHHHHHHHHHHHHHHCSEEEEEETTTTEEEEEESSCHHHHHHHHHTTCSCEEEEEC
T ss_pred ceEEEEECcCcHHHHHHHHHHHHcCCCeEEEEEcCCCEEEEEecCCHHHHHHHHHHcCCceEecCC
Confidence 46789998899999999999999999999999999999999999999999999999 999999875
No 2
>1cc8_A Protein (metallochaperone ATX1); copper transport, mercury coordination, metal transport; 1.02A {Saccharomyces cerevisiae} SCOP: d.58.17.1 PDB: 1cc7_A 1fd8_A 1fes_A 2ggp_A 3k7r_A
Probab=99.62 E-value=3.3e-15 Score=96.83 Aligned_cols=64 Identities=17% Similarity=0.146 Sum_probs=60.6
Q ss_pred eEEEEEEeecChhhHHHHHHHHhccC-Ce-eEEEeCCCCEEEEEeecCHHHHHHHHhc-CCceEEee
Q 048021 11 MTCGLKVDTNDPAWFSSMTKVLRKIK-GA-SYTIDAEEGMAYITGRANPRKLLRKLQS-GKYANLCW 74 (143)
Q Consensus 11 ~tvvlkV~m~C~gC~~kIkkaL~kI~-GV-sV~VDle~~~VtV~G~vdp~~Ll~aI~k-Gk~Ael~~ 74 (143)
++++|+|+|+|++|+++|+++|++++ || ++++|+.+++++|.+.++++.|+++|++ ||.++++.
T Consensus 5 ~~~~~~v~m~C~~C~~~ie~~l~~~~~GV~~~~v~~~~~~~~v~~~~~~~~i~~~i~~~Gy~~~~~~ 71 (73)
T 1cc8_A 5 KHYQFNVVMTCSGCSGAVNKVLTKLEPDVSKIDISLEKQLVDVYTTLPYDFILEKIKKTGKEVRSGK 71 (73)
T ss_dssp EEEEEEECCCSHHHHHHHHHHHHTTTTSEEEEEEETTTTEEEEEESSCHHHHHHHHHTTSSCEEEEE
T ss_pred eEEEEEEeeECHHHHHHHHHHHHhCCCCceEEEEECCCCEEEEEEeCCHHHHHHHHHHhCCCceeee
Confidence 56789999999999999999999999 99 7999999999999998999999999999 99998865
No 3
>2crl_A Copper chaperone for superoxide dismutase; SOD1, familial ALS, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.58 E-value=1.7e-14 Score=100.56 Aligned_cols=72 Identities=17% Similarity=0.224 Sum_probs=66.0
Q ss_pred ceEEEEEEeecChhhHHHHHHHHhccCCe-eEEEeCCCCEEEEEeecCHHHHHHHHhc-CCceEEeecCCCCCC
Q 048021 10 KMTCGLKVDTNDPAWFSSMTKVLRKIKGA-SYTIDAEEGMAYITGRANPRKLLRKLQS-GKYANLCWVSAGNQI 81 (143)
Q Consensus 10 ~~tvvlkV~m~C~gC~~kIkkaL~kI~GV-sV~VDle~~~VtV~G~vdp~~Ll~aI~k-Gk~Ael~~~~~~~s~ 81 (143)
.++++|+|+|+|.+|+++|+++|++++|| ++.||++.++++|.+.++++.|+++|++ ||+++++..+..+.+
T Consensus 18 ~~~~~l~V~m~C~~C~~~Ie~aL~~l~GV~~v~vdl~~~~~~V~~~~~~~~i~~~i~~~Gy~~~~~~~~~~~~~ 91 (98)
T 2crl_A 18 LCTLEFAVQMTCQSCVDAVRKSLQGVAGVQDVEVHLEDQMVLVHTTLPSQEVQALLEGTGRQAVLKGMGSGQLQ 91 (98)
T ss_dssp CEEEEEEECCCSHHHHHHHHHTTTTCTTCCEEEEETTTTEEEEEESSCHHHHHHHHHTTTSCEEEEESCCCCCC
T ss_pred ceEEEEEEeeECHHHHHHHHHHHHcCCCceEEEEECCCCEEEEEEeCCHHHHHHHHHHhCCceEEccCCCCccC
Confidence 45678999999999999999999999999 7999999999999998999999999999 999999887765543
No 4
>4a4j_A Pacszia, cation-transporting ATPase PACS; hydrolase, copper homeostasis, zinc homeostasis, ATX1, metal-transporting atpases; 1.25A {Synechocystis} PDB: 4a48_A 2gcf_A 2xmw_A
Probab=99.57 E-value=1.4e-14 Score=92.24 Aligned_cols=63 Identities=21% Similarity=0.335 Sum_probs=58.7
Q ss_pred eEEEEEEe-ecChhhHHHHHHHHhccCCe-eEEEeCCCCEEEEE--eecCHHHHHHHHhc-CCceEEe
Q 048021 11 MTCGLKVD-TNDPAWFSSMTKVLRKIKGA-SYTIDAEEGMAYIT--GRANPRKLLRKLQS-GKYANLC 73 (143)
Q Consensus 11 ~tvvlkV~-m~C~gC~~kIkkaL~kI~GV-sV~VDle~~~VtV~--G~vdp~~Ll~aI~k-Gk~Ael~ 73 (143)
++++|+|+ |+|.+|+++|+++|++++|| ++.+|+..++++|. +.++++.|+++|++ ||+++++
T Consensus 2 ~~~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~i~~~i~~~Gy~~~~~ 69 (69)
T 4a4j_A 2 QTINLQLEGMDCTSCASSIERAIAKVPGVQSCQVNFALEQAVVSYHGETTPQILTDAVERAGYHARVL 69 (69)
T ss_dssp EEEEEEEESCCSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEECTTCCHHHHHHHHHHTTCEEEEC
T ss_pred CEEEEEECCeecHHHHHHHHHHHhcCCCeEEEEEEecCCEEEEEECCCCCHHHHHHHHHHcCCceEeC
Confidence 57889997 79999999999999999999 79999999999999 67899999999999 9999874
No 5
>3dxs_X Copper-transporting ATPase RAN1; CXXC motif, ferredoxin-like fold, ATP- binding, ethylene signaling pathway, hydrolase, ION transport; 1.70A {Arabidopsis thaliana} SCOP: d.58.17.0
Probab=99.49 E-value=1.6e-13 Score=88.62 Aligned_cols=65 Identities=12% Similarity=0.085 Sum_probs=59.0
Q ss_pred eEEEEEEe-ecChhhHHHHHHHHhccCCe-eEEEeCCCCEEEEEe---ecCHHHHHHHHhc-CCceEEeec
Q 048021 11 MTCGLKVD-TNDPAWFSSMTKVLRKIKGA-SYTIDAEEGMAYITG---RANPRKLLRKLQS-GKYANLCWV 75 (143)
Q Consensus 11 ~tvvlkV~-m~C~gC~~kIkkaL~kI~GV-sV~VDle~~~VtV~G---~vdp~~Ll~aI~k-Gk~Ael~~~ 75 (143)
++++|+|+ |+|.+|+.+|+++|++++|| ++.||+..++++|.. .++++.|+++|++ ||+++++.-
T Consensus 2 ~~~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~~~~~~~ 72 (74)
T 3dxs_X 2 RKIQVGVTGMTCAACSNSVEAALMNVNGVFKASVALLQNRADVVFDPNLVKEEDIKEEIEDAGFEAEILAE 72 (74)
T ss_dssp EEEEEEEECCCSHHHHHHHHHHHHTSTTEEEEEEEGGGTEEEEEECTTTCCHHHHHHHHHHHTCEEEEEEE
T ss_pred cEEEEEECCcCCHHHHHHHHHHHhcCCCEEEEEEEecCCEEEEEECCCCCCHHHHHHHHHHCCCceEEccC
Confidence 46789996 79999999999999999999 799999999999985 3689999999999 999998753
No 6
>2xmm_A SSR2857 protein, ATX1; metal transport, copper homeostasis, chaperone, P-type atpas; 1.65A {Synechocystis SP} PDB: 2xmv_A 1sb6_A 2xmj_A 2xmk_A 2xmt_A 2xmu_A
Probab=99.46 E-value=9.5e-14 Score=85.18 Aligned_cols=61 Identities=21% Similarity=0.195 Sum_probs=55.9
Q ss_pred eEEEEEEe-ecChhhHHHHHHHHhccCCe-eEEEeCCCCEEEEEeecCHHHHHHHHhc-CCceE
Q 048021 11 MTCGLKVD-TNDPAWFSSMTKVLRKIKGA-SYTIDAEEGMAYITGRANPRKLLRKLQS-GKYAN 71 (143)
Q Consensus 11 ~tvvlkV~-m~C~gC~~kIkkaL~kI~GV-sV~VDle~~~VtV~G~vdp~~Ll~aI~k-Gk~Ae 71 (143)
|+++|+|+ |+|.+|+.+|+++|.+++|| ++.+|+..++++|.+.++++.|.++|++ ||.++
T Consensus 1 m~~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~i~~~i~~~G~~~~ 64 (64)
T 2xmm_A 1 MTIQLTVPTIACEACAEAVTKAVQNEDAQATVQVDLTSKKVTITSALGEEQLRTAIASAGYEVE 64 (64)
T ss_dssp -CEEEECTTCCSHHHHHHHHHHHHHHCTTCEEEECTTTCEEEEECSSCHHHHHHHHHHTTCCCC
T ss_pred CeEEEEECCcCcHHHHHHHHHHHhcCCCcEEEEEEecCCEEEEEecCCHHHHHHHHHHcCCCCC
Confidence 45789995 89999999999999999999 7999999999999988899999999999 99764
No 7
>3fry_A Probable copper-exporting P-type ATPase A; transport protein, metal binding domain, domain SWAP, ATP-BI cell membrane, copper transport; HET: CIT; 2.00A {Archaeoglobus fulgidus}
Probab=99.45 E-value=2.1e-13 Score=88.86 Aligned_cols=64 Identities=17% Similarity=0.171 Sum_probs=59.3
Q ss_pred ceEEEEEEe-ecChhhHHHHHHHHhccCCe-eEEEeCCCCEEEEEeecCHHHHHHHHhc-CCceEEeec
Q 048021 10 KMTCGLKVD-TNDPAWFSSMTKVLRKIKGA-SYTIDAEEGMAYITGRANPRKLLRKLQS-GKYANLCWV 75 (143)
Q Consensus 10 ~~tvvlkV~-m~C~gC~~kIkkaL~kI~GV-sV~VDle~~~VtV~G~vdp~~Ll~aI~k-Gk~Ael~~~ 75 (143)
.++.+|+|+ |+|.+|+.+|+++|++ +|| .+.||+..++++|... +++.|+++|++ ||.+++++.
T Consensus 4 m~~~~~~v~gm~C~~C~~~ie~~l~~-~gv~~~~v~~~~~~~~v~~~-~~~~i~~~i~~~Gy~~~~~~~ 70 (73)
T 3fry_A 4 VEKIVLELSGLSCHHCVARVKKALEE-AGAKVEKVDLNEAVVAGNKE-DVDKYIKAVEAAGYQAKLRSS 70 (73)
T ss_dssp CEEEEEEEESSBCGGGHHHHHHHHHH-TTCEEEEECSSEEEEEEEGG-GHHHHHHHHHHTTCEEEECCS
T ss_pred cEEEEEEECCCCCHHHHHHHHHHhcc-CCcEEEEEEccCCEEEEEEC-CHHHHHHHHHHcCCceEecCc
Confidence 457889997 8999999999999999 999 7999999999999988 99999999999 999998764
No 8
>2roe_A Heavy metal binding protein; NMR {Thermus thermophilus} PDB: 2rog_A
Probab=99.42 E-value=3e-13 Score=84.94 Aligned_cols=61 Identities=28% Similarity=0.463 Sum_probs=56.0
Q ss_pred EEEEEe-ecChhhHHHHHHHHhccCCe-eEEEeCCCCEEEEEeecCHHHHHHHHhc-CCceEEe
Q 048021 13 CGLKVD-TNDPAWFSSMTKVLRKIKGA-SYTIDAEEGMAYITGRANPRKLLRKLQS-GKYANLC 73 (143)
Q Consensus 13 vvlkV~-m~C~gC~~kIkkaL~kI~GV-sV~VDle~~~VtV~G~vdp~~Ll~aI~k-Gk~Ael~ 73 (143)
.+|+|+ |+|.+|+.+|+++|.+++|| ++.+|+..++++|.+.++++.|+++|++ ||.++.+
T Consensus 2 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~i~~~i~~~Gy~~~~~ 65 (66)
T 2roe_A 2 LKLKVEGMTCNHCVMAVTKALKKVPGVEKVEVSLEKGEALVEGTADPKALVQAVEEEGYKAEVL 65 (66)
T ss_dssp BCEEEECCCSHHHHHHHHHHHHTSTTCCCEEECSSSCBEEECSCCCHHHHHHHHHTTTCEEEEC
T ss_pred EEEEECCeEcHHHHHHHHHHHHcCCCeEEEEEEeCCCEEEECCCCCHHHHHHHHHHcCCCcEec
Confidence 358886 89999999999999999999 7999999999999777899999999999 9998764
No 9
>1qup_A Superoxide dismutase 1 copper chaperone; two domains, beta-alpha-beta-BETA-alpha-beta and beta barrel; 1.80A {Saccharomyces cerevisiae} SCOP: b.1.8.1 d.58.17.1
Probab=99.39 E-value=1e-12 Score=105.11 Aligned_cols=73 Identities=15% Similarity=0.269 Sum_probs=66.8
Q ss_pred CCCceEEEEEEeecChhhHHHHHHHHhccCCe-eEEEeCCCCEEEEEeecCHHHHHHHHhc-CCceEEeecCCCC
Q 048021 7 SSAKMTCGLKVDTNDPAWFSSMTKVLRKIKGA-SYTIDAEEGMAYITGRANPRKLLRKLQS-GKYANLCWVSAGN 79 (143)
Q Consensus 7 ~s~~~tvvlkV~m~C~gC~~kIkkaL~kI~GV-sV~VDle~~~VtV~G~vdp~~Ll~aI~k-Gk~Ael~~~~~~~ 79 (143)
+...++++|+|+|+|.+|+++|+++|++++|| +++||++.++++|.+.+++++|+++|++ ||+++++....++
T Consensus 2 ~~~~~~~~l~V~MtC~~Ca~~IekaL~~l~GV~~v~Vnl~~~~v~V~~~~~~~~I~~aI~~~Gy~a~~~~~~~~~ 76 (222)
T 1qup_A 2 TNDTYEATYAIPMHCENCVNDIKACLKNVPGINSLNFDIEQQIMSVESSVAPSTIINTLRNCGKDAIIRGAGKPN 76 (222)
T ss_dssp GGGCEEEEEECCCCSTTHHHHHHHHHTTCTTEEEEEEETTTTEEEEEESSCHHHHHHHHHHTTCCCEEECCSCTT
T ss_pred cccceEEEEEEccccHHHHHHHHHHHhcCCCeeEEEEEcCCCEEEEeccCCHHHHHHHHHHcCCccccccCCCcc
Confidence 34567889999999999999999999999999 7999999999999999999999999999 9999998876554
No 10
>2l3m_A Copper-ION-binding protein; structural genomics, center for structural genomics of infec diseases, csgid, metal binding protein; NMR {Bacillus anthracis}
Probab=99.39 E-value=1.9e-12 Score=81.20 Aligned_cols=63 Identities=13% Similarity=0.217 Sum_probs=56.1
Q ss_pred CceEEEEEEe-ecChhhHHHHHHHHhccCCe-eEEEeCCCCEEEEEe---ecCHHHHHHHHhc-CCceE
Q 048021 9 AKMTCGLKVD-TNDPAWFSSMTKVLRKIKGA-SYTIDAEEGMAYITG---RANPRKLLRKLQS-GKYAN 71 (143)
Q Consensus 9 ~~~tvvlkV~-m~C~gC~~kIkkaL~kI~GV-sV~VDle~~~VtV~G---~vdp~~Ll~aI~k-Gk~Ae 71 (143)
..++++|+|. |+|.+|+.+|+++|.+++|| ++.+|+..++++|.. .++++.|+++|++ ||.++
T Consensus 3 ~~~~~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~G~~~~ 71 (71)
T 2l3m_A 3 AMEQLTLQVEGMSCGHCVNAIESSVKELNGVEQVKVQLAEGTVEVTIDSSVVTLKDIVAVIEDQGYDVQ 71 (71)
T ss_dssp SEEEEEEEEECCCSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEEETTTSCHHHHHHHHHHTTCEEC
T ss_pred CcEEEEEEECCccCHHHHHHHHHHHHcCCCeEEEEEEecCCEEEEEECCCCCCHHHHHHHHHHcCCCCC
Confidence 3467889996 89999999999999999999 799999999999984 3688999999999 99764
No 11
>1aw0_A Menkes copper-transporting ATPase; copper-binding domain, hydrolase; NMR {Homo sapiens} SCOP: d.58.17.1 PDB: 2aw0_A
Probab=99.39 E-value=2.2e-12 Score=80.91 Aligned_cols=64 Identities=17% Similarity=0.221 Sum_probs=57.3
Q ss_pred ceEEEEEEe-ecChhhHHHHHHHHhccCCe-eEEEeCCCCEEEEEee---cCHHHHHHHHhc-CCceEEe
Q 048021 10 KMTCGLKVD-TNDPAWFSSMTKVLRKIKGA-SYTIDAEEGMAYITGR---ANPRKLLRKLQS-GKYANLC 73 (143)
Q Consensus 10 ~~tvvlkV~-m~C~gC~~kIkkaL~kI~GV-sV~VDle~~~VtV~G~---vdp~~Ll~aI~k-Gk~Ael~ 73 (143)
.++++|+|. |+|.+|+.+|+++|.+++|| ++.+|+..++++|... ++++.|+++|++ ||.+++.
T Consensus 2 ~~~~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~G~~~~~~ 71 (72)
T 1aw0_A 2 TQETVINIDGMTCNSCVQSIEGVISKKPGVKSIRVSLANSNGTVEYDPLLTSPETLRGAIEDMGFDATLS 71 (72)
T ss_dssp CEEEEEEEECCCHHHHHHHHHHHHHTSTTCCCEEEETTTTEEEEEECTTTCCHHHHHHHHHHHTCEEEEC
T ss_pred CeEEEEEECCeecHHHHHHHHHHHhcCCCeEEEEEEccCCEEEEEECCCcCCHHHHHHHHHHCCCCcEeC
Confidence 456789996 89999999999999999999 7999999999999864 578999999999 9988753
No 12
>1fvq_A Copper-transporting ATPase; APO-CCC2A, hydrolase; NMR {Saccharomyces cerevisiae} SCOP: d.58.17.1 PDB: 1fvs_A 2ggp_B
Probab=99.36 E-value=2.5e-12 Score=80.60 Aligned_cols=64 Identities=16% Similarity=0.152 Sum_probs=58.0
Q ss_pred eEEEEEEe-ecChhhHHHHHHHHhccCCe-eEEEeCCCCEEEEEe--ecCHHHHHHHHhc-CCceEEee
Q 048021 11 MTCGLKVD-TNDPAWFSSMTKVLRKIKGA-SYTIDAEEGMAYITG--RANPRKLLRKLQS-GKYANLCW 74 (143)
Q Consensus 11 ~tvvlkV~-m~C~gC~~kIkkaL~kI~GV-sV~VDle~~~VtV~G--~vdp~~Ll~aI~k-Gk~Ael~~ 74 (143)
++++|+|+ |+|.+|+++|+++|.+++|| ++.+|+..++++|.. .++++.|.++|++ ||.++++.
T Consensus 2 ~~~~~~v~gm~C~~c~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~i~~~i~~~G~~~~~~~ 70 (72)
T 1fvq_A 2 REVILAVHGMTCSACTNTINTQLRALKGVTKCDISLVTNECQVTYDNEVTADSIKEIIEDCGFDCEILR 70 (72)
T ss_dssp EEEEEEECSCCSHHHHHHHHHHHHTSSSEEEECCBTTTTEEEEEECTTSCHHHHHHHHHHHTCCEEEEE
T ss_pred eEEEEEECCeecHHHHHHHHHHHhcCCCeEEEEEEecCCEEEEEECCCCCHHHHHHHHHHCCCceEEcc
Confidence 67889996 89999999999999999999 799999999999985 4678999999999 99998764
No 13
>2xmw_A PACS-N, cation-transporting ATPase PACS; hydrolase, Cu(I)-binding, trafficking; 1.80A {Synechocystis SP} PDB: 2gcf_A
Probab=99.35 E-value=7.3e-12 Score=78.04 Aligned_cols=63 Identities=21% Similarity=0.278 Sum_probs=55.5
Q ss_pred eEEEEEEe-ecChhhHHHHHHHHhccCCe-eEEEeCCCCEEEEEee--cCHHHHHHHHhc-CCceEEe
Q 048021 11 MTCGLKVD-TNDPAWFSSMTKVLRKIKGA-SYTIDAEEGMAYITGR--ANPRKLLRKLQS-GKYANLC 73 (143)
Q Consensus 11 ~tvvlkV~-m~C~gC~~kIkkaL~kI~GV-sV~VDle~~~VtV~G~--vdp~~Ll~aI~k-Gk~Ael~ 73 (143)
.+++|+|+ |+|.+|+.+|+++|.+++|| ++.+|+..++++|... ++++.|+++|++ ||.+.+.
T Consensus 3 ~~~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~i~~~i~~~G~~~~~~ 70 (71)
T 2xmw_A 3 QTINLQLEGMRCAACASSIERAIAKVPGVQSCQVNFALEQAVVSYHGETTPQILTDAVERAGYHARVL 70 (71)
T ss_dssp EEEEEEEECCCSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEEC---CHHHHHHHHHHHTCEEEEE
T ss_pred cEEEEEECCcccHHHHHHHHHHHhcCCCeEEEEEEccCCEEEEEECCCCCHHHHHHHHHHcCCCceeC
Confidence 45789997 79999999999999999999 7999999999999843 678999999999 9988753
No 14
>2k2p_A Uncharacterized protein ATU1203; putative metal-binding domain ATU1203, ontario centre for ST proteomics, structural genomics; NMR {Agrobacterium tumefaciens str}
Probab=99.34 E-value=1.2e-12 Score=88.91 Aligned_cols=63 Identities=8% Similarity=0.102 Sum_probs=56.8
Q ss_pred CceEEEEEEe-ecChhhHHHHHHHHhccCCe-eEEEeCCCCEEEEEeecCHHHHHHHHhc-CCceE
Q 048021 9 AKMTCGLKVD-TNDPAWFSSMTKVLRKIKGA-SYTIDAEEGMAYITGRANPRKLLRKLQS-GKYAN 71 (143)
Q Consensus 9 ~~~tvvlkV~-m~C~gC~~kIkkaL~kI~GV-sV~VDle~~~VtV~G~vdp~~Ll~aI~k-Gk~Ae 71 (143)
...+++|+|+ |+|.+|+++|+++|++++|| ++.||+..++++|.+.++++.|+++|++ ||.++
T Consensus 20 ~~~~~~l~V~Gm~C~~C~~~Ie~aL~~~~GV~~v~v~l~~~~~~V~~~~~~~~i~~~i~~~Gy~~~ 85 (85)
T 2k2p_A 20 QGAGLSFHVEDMTCGHCAGVIKGAIEKTVPGAAVHADPASRTVVVGGVSDAAHIAEIITAAGYTPE 85 (85)
T ss_dssp --CEEEEECTTCCHHHHHHHHHHHHHHHSTTCEEEEETTTTEEEEESCCCHHHHHHHHHHTTCCCC
T ss_pred cccEEEEEECCCCCHHHHHHHHHHHhcCCCeeEEEEECCCCEEEEEecCCHHHHHHHHHHcCCCCC
Confidence 3456789996 89999999999999999999 7999999999999988999999999999 99763
No 15
>1osd_A MERP, hypothetical protein MERP; mercury resistance, metal binding protein, perisplasm, structural genomics; 2.00A {Cupriavidus metallidurans} SCOP: d.58.17.1 PDB: 1afi_A 1afj_A 2hqi_A
Probab=99.34 E-value=6.6e-12 Score=78.65 Aligned_cols=64 Identities=20% Similarity=0.195 Sum_probs=57.0
Q ss_pred ceEEEEEEe-ecChhhHHHHHHHHhccCCe-eEEEeCCCCEEEEEee---cCHHHHHHHHhc-CCceEEe
Q 048021 10 KMTCGLKVD-TNDPAWFSSMTKVLRKIKGA-SYTIDAEEGMAYITGR---ANPRKLLRKLQS-GKYANLC 73 (143)
Q Consensus 10 ~~tvvlkV~-m~C~gC~~kIkkaL~kI~GV-sV~VDle~~~VtV~G~---vdp~~Ll~aI~k-Gk~Ael~ 73 (143)
.++++|+|+ |+|.+|+.+|+++|.+++|| ++.+|+..++++|... ++++.|+++|++ ||.+++.
T Consensus 2 ~~~~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~G~~~~~~ 71 (72)
T 1osd_A 2 TQTVTLSVPGMTCSACPITVKKAISKVEGVSKVDVTFETRQAVVTFDDAKTSVQKLTKATADAGYPSSVK 71 (72)
T ss_dssp EEEEEEECTTCCSTTHHHHHHHHHHTSTTEEEEEEETTTTEEEEEEETTTCCHHHHHHHHHHTTCCCEEC
T ss_pred ceEEEEEECCeEcHHHHHHHHHHHhcCCCeEEEEEEecCCEEEEEECCCCCCHHHHHHHHHhcCCCeEec
Confidence 356789996 89999999999999999999 7999999999999854 578999999999 9998763
No 16
>1q8l_A Copper-transporting ATPase 1; metal binding protein; NMR {Homo sapiens} SCOP: d.58.17.1 PDB: 1s6o_A 1s6u_A
Probab=99.33 E-value=5.6e-12 Score=83.25 Aligned_cols=71 Identities=13% Similarity=0.165 Sum_probs=61.4
Q ss_pred CCCCCceEEEEEEe-ecChhhHHHHHHHHhccCCe-eEEEeCCCCEEEEEee---cCHHHHHHHHhc-CCceEEeec
Q 048021 5 SSSSAKMTCGLKVD-TNDPAWFSSMTKVLRKIKGA-SYTIDAEEGMAYITGR---ANPRKLLRKLQS-GKYANLCWV 75 (143)
Q Consensus 5 s~~s~~~tvvlkV~-m~C~gC~~kIkkaL~kI~GV-sV~VDle~~~VtV~G~---vdp~~Ll~aI~k-Gk~Ael~~~ 75 (143)
+--...++++|+|+ |+|.+|+++|+++|.+++|| ++.+|+..++++|... ++++.|+++|++ ||.+++...
T Consensus 3 ~~~~~~~~~~~~v~gm~C~~C~~~ie~~l~~~~GV~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~~~~~~~ 79 (84)
T 1q8l_A 3 MAQAGEVVLKMKVEGMTCHSCTSTIEGKIGKLQGVQRIKVSLDNQEATIVYQPHLISVEEMKKQIEAMGFPAFVKKQ 79 (84)
T ss_dssp SSSSSCEEEEEEECCTTTCSSCHHHHHHHHTCTTEEEEEECSTTTEEEEEECTTTCCHHHHHHHHHHTTCCEECSCC
T ss_pred ccccCceEEEEEECCcccHHHHHHHHHHHHcCCCeEEEEEEecCCEEEEEECCCCCCHHHHHHHHHHcCCceEecCC
Confidence 33445678899996 79999999999999999999 7999999999999863 588999999999 999876553
No 17
>1cpz_A Protein (COPZ); copper chaperone, metal transport, gene regulation; NMR {Enterococcus hirae} SCOP: d.58.17.1
Probab=99.32 E-value=9.4e-12 Score=76.93 Aligned_cols=61 Identities=10% Similarity=0.178 Sum_probs=54.8
Q ss_pred EEEEEe-ecChhhHHHHHHHHhccCCe-eEEEeCCCCEEEEEee---cCHHHHHHHHhc-CCceEEe
Q 048021 13 CGLKVD-TNDPAWFSSMTKVLRKIKGA-SYTIDAEEGMAYITGR---ANPRKLLRKLQS-GKYANLC 73 (143)
Q Consensus 13 vvlkV~-m~C~gC~~kIkkaL~kI~GV-sV~VDle~~~VtV~G~---vdp~~Ll~aI~k-Gk~Ael~ 73 (143)
++|+|+ |+|.+|+.+|+++|.+++|| ++.+|+..++++|... ++++.|.++|++ ||.++++
T Consensus 2 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~G~~~~~~ 68 (68)
T 1cpz_A 2 QEFSVKGMSCNHCVARIEEAVGRISGVKKVKVQLKKEKAVVKFDEANVQATEICQAINELGYQAEVI 68 (68)
T ss_dssp CEEEESCCCSSSHHHHHHHHHHTSTTEEEEEEETTTTEEEEEECTTTCCHHHHHHHHHTTSSCEEEC
T ss_pred EEEEECCeeCHHHHHHHHHHHHcCCCeEEEEEEecCCEEEEEECCCCCCHHHHHHHHHHcCCCcccC
Confidence 368886 89999999999999999999 7999999999999853 588999999999 9998764
No 18
>1kvi_A Copper-transporting ATPase 1; menkes, Cu-protein, hydrolase; NMR {Homo sapiens} SCOP: d.58.17.1 PDB: 1kvj_A
Probab=99.31 E-value=1.1e-11 Score=79.71 Aligned_cols=67 Identities=16% Similarity=0.188 Sum_probs=59.3
Q ss_pred CceEEEEEEe-ecChhhHHHHHHHHhccCCe-eEEEeCCCCEEEEEee---cCHHHHHHHHhc-CCceEEeec
Q 048021 9 AKMTCGLKVD-TNDPAWFSSMTKVLRKIKGA-SYTIDAEEGMAYITGR---ANPRKLLRKLQS-GKYANLCWV 75 (143)
Q Consensus 9 ~~~tvvlkV~-m~C~gC~~kIkkaL~kI~GV-sV~VDle~~~VtV~G~---vdp~~Ll~aI~k-Gk~Ael~~~ 75 (143)
...+++|+|. |+|.+|+.+|+++|.+++|| ++.+|+..++++|... ++++.|+++|++ ||.+++..+
T Consensus 6 ~~~~~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~~~~~~~ 78 (79)
T 1kvi_A 6 GVNSVTISVEGMTCNSCVWTIEQQIGKVNGVHHIKVSLEEKNATIIYDPKLQTPKTLQEAIDDMGFDAVIHNP 78 (79)
T ss_dssp TCEEEEEEECCCCSTTTHHHHHHHHHHSSSCCCEEEEGGGTEEEEEECTTTCCHHHHHHHHHHHCCCEEECCC
T ss_pred CcEEEEEEECCccCHHHHHHHHHHHhcCCCeEEEEEEccCCEEEEEECCCCCCHHHHHHHHHHCCCceEecCC
Confidence 3567889996 89999999999999999999 7999999999999853 578999999999 999887654
No 19
>1opz_A Potential copper-transporting ATPase; mutation, folding, abbab fold, hydrolase; NMR {Bacillus subtilis} SCOP: d.58.17.1 PDB: 1oq3_A 1oq6_A
Probab=99.31 E-value=7.5e-12 Score=78.71 Aligned_cols=65 Identities=11% Similarity=0.173 Sum_probs=57.4
Q ss_pred CceEEEEEEe-ecChhhHHHHHHHHhccCCe-eEEEeCCCCEEEEEe---ecCHHHHHHHHhc-CCceEEe
Q 048021 9 AKMTCGLKVD-TNDPAWFSSMTKVLRKIKGA-SYTIDAEEGMAYITG---RANPRKLLRKLQS-GKYANLC 73 (143)
Q Consensus 9 ~~~tvvlkV~-m~C~gC~~kIkkaL~kI~GV-sV~VDle~~~VtV~G---~vdp~~Ll~aI~k-Gk~Ael~ 73 (143)
+..+.+|+|+ |+|.+|+.+|+++|.+++|| ++.+|+..++++|.. .++++.|.++|++ ||.++++
T Consensus 4 ~~~~~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~G~~~~~~ 74 (76)
T 1opz_A 4 EQKEIAMQVSGMTCAACAARIEKGLKRMPGVTDANVNLATETVNVIYDPAETGTAAIQEKIEKLGYHVVIE 74 (76)
T ss_dssp CCEEEEEEEESCCSTTHHHHHHHHHHTSTTEEEEEEEGGGTEEEEEECTTTCCHHHHHHHHHHHTCEEECC
T ss_pred cceEEEEEECCcccHHHHHHHHHHHhcCCCeEEEEEEecCCEEEEEECCCCCCHHHHHHHHHHCCCceecC
Confidence 3567889997 79999999999999999999 799999999999984 4578999999999 9987654
No 20
>3cjk_B Copper-transporting ATPase 1; HAH1, ATP7B, menkes disease, metal homeostasis, chaperone, ION transport, metal- binding, alternative splicing; 1.80A {Homo sapiens} PDB: 2k1r_A
Probab=99.30 E-value=2.4e-11 Score=77.25 Aligned_cols=64 Identities=17% Similarity=0.240 Sum_probs=57.3
Q ss_pred EEEEEEe-ecChhhHHHHHHHHhccCCe-eEEEeCCCCEEEEEee---cCHHHHHHHHhc-CCceEEeec
Q 048021 12 TCGLKVD-TNDPAWFSSMTKVLRKIKGA-SYTIDAEEGMAYITGR---ANPRKLLRKLQS-GKYANLCWV 75 (143)
Q Consensus 12 tvvlkV~-m~C~gC~~kIkkaL~kI~GV-sV~VDle~~~VtV~G~---vdp~~Ll~aI~k-Gk~Ael~~~ 75 (143)
+++|+|+ |+|.+|+.+|+++|.+++|| ++.+|+..++++|... ++++.|+++|++ ||.+++...
T Consensus 3 ~~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~~~~~~~ 72 (75)
T 3cjk_B 3 SVTISVEGMTCNSCVWTIEQQIGKVNGVHHIKVSLEEKNATIIYDPKLQTPKTLQEAIDDMGFDAVIHNI 72 (75)
T ss_dssp EEEEEECCCCSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEECTTTCCHHHHHHHHHHTTCCEEEEEE
T ss_pred EEEEEECCccCHHHHHHHHHHHhcCCCeEEEEEEecCCEEEEEECCCCCCHHHHHHHHHHcCCceEeecC
Confidence 4678996 89999999999999999999 7999999999999853 578999999999 999987654
No 21
>2kyz_A Heavy metal binding protein; structural genomics, PSI-biology, protein structure initiative, joint for structural genomics, JCSG; NMR {Thermotoga maritima}
Probab=99.30 E-value=3.5e-12 Score=80.37 Aligned_cols=60 Identities=20% Similarity=0.241 Sum_probs=53.7
Q ss_pred eEEEEEEe-ecChhhHHHHHHHHhccCCe-eEEEeCCCCEEEEEeecCHHHHHHHHhc-CCceEE
Q 048021 11 MTCGLKVD-TNDPAWFSSMTKVLRKIKGA-SYTIDAEEGMAYITGRANPRKLLRKLQS-GKYANL 72 (143)
Q Consensus 11 ~tvvlkV~-m~C~gC~~kIkkaL~kI~GV-sV~VDle~~~VtV~G~vdp~~Ll~aI~k-Gk~Ael 72 (143)
|+.+|+|+ |+|.+|+.+|+++|.++ || ++.+|+..++++|....+ +.|+++|++ ||.+..
T Consensus 1 m~~~~~v~gm~C~~C~~~i~~~l~~~-gv~~~~v~~~~~~~~v~~~~~-~~i~~~i~~~Gy~~~~ 63 (67)
T 2kyz_A 1 MRYVLYVPDISCNHCKMRISKALEEL-GVKNYEVSVEEKKVVVETENL-DSVLKKLEEIDYPVES 63 (67)
T ss_dssp CEEEEECGGGGSHHHHHHHHHHHHHH-TCSEEEEETTTTEEEEECSCH-HHHHHHHHTTTCCCCB
T ss_pred CeEEEEECCcCcHHHHHHHHHHHHHc-CCeEEEEECCCCEEEEEECCH-HHHHHHHHHcCCceee
Confidence 45789995 89999999999999999 99 799999999999987655 899999999 998753
No 22
>1jk9_B CCS, copper chaperone for superoxide dismutase; protein-protein complex, heterodimer, metallochaperone, amyotrophic lateral sclerosis; 2.90A {Saccharomyces cerevisiae} SCOP: b.1.8.1 d.58.17.1
Probab=99.30 E-value=9.4e-12 Score=101.29 Aligned_cols=71 Identities=15% Similarity=0.265 Sum_probs=65.6
Q ss_pred CceEEEEEEeecChhhHHHHHHHHhccCCe-eEEEeCCCCEEEEEeecCHHHHHHHHhc-CCceEEeecCCCC
Q 048021 9 AKMTCGLKVDTNDPAWFSSMTKVLRKIKGA-SYTIDAEEGMAYITGRANPRKLLRKLQS-GKYANLCWVSAGN 79 (143)
Q Consensus 9 ~~~tvvlkV~m~C~gC~~kIkkaL~kI~GV-sV~VDle~~~VtV~G~vdp~~Ll~aI~k-Gk~Ael~~~~~~~ 79 (143)
..++++|+|+|+|.+|+++|+++|++++|| +++||++.++++|.+.+++++|+++|++ ||+++++....++
T Consensus 5 ~~~~~~l~V~MtC~~Ca~~IekaL~~l~GV~~v~Vnl~~~~v~V~~~~~~~~I~~aIe~~Gy~a~~~~~~~~~ 77 (249)
T 1jk9_B 5 DTYEATYAIPMHCENCVNDIKACLKNVPGINSLNFDIEQQIMSVESSVAPSTIINTLRNCGKDAIIRGAGKPN 77 (249)
T ss_dssp CCEEEEEECCCCSSSHHHHHHHHHTTCTTEEEEEEETTTTEEEEEESSCHHHHHHHHHTTTCCCEEEEESSTT
T ss_pred CceeEEEEEeeccHHHHHHHHHHHhccCCeeEEEEEcCCCeEEEecCCCHHHHHHHHHHhCCCcccccCCccc
Confidence 357789999999999999999999999999 7999999999999998999999999999 9999998876654
No 23
>2qif_A Copper chaperone COPZ; tetranuclear Cu(I) cluster; 1.50A {Bacillus subtilis} SCOP: d.58.17.1 PDB: 3i9z_A 1k0v_A 1p8g_A
Probab=99.29 E-value=1.4e-11 Score=75.25 Aligned_cols=61 Identities=10% Similarity=0.201 Sum_probs=54.2
Q ss_pred eEEEEEEe-ecChhhHHHHHHHHhccCCe-eEEEeCCCCEEEEEe---ecCHHHHHHHHhc-CCceE
Q 048021 11 MTCGLKVD-TNDPAWFSSMTKVLRKIKGA-SYTIDAEEGMAYITG---RANPRKLLRKLQS-GKYAN 71 (143)
Q Consensus 11 ~tvvlkV~-m~C~gC~~kIkkaL~kI~GV-sV~VDle~~~VtV~G---~vdp~~Ll~aI~k-Gk~Ae 71 (143)
++.+|+|+ |+|.+|+.+|+++|.+++|| ++.+|+..++++|.. .++++.|.++|++ ||.++
T Consensus 2 ~~~~~~v~gm~C~~c~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~G~~~~ 68 (69)
T 2qif_A 2 EQKTLQVEGMSCQHCVKAVETSVGELDGVSAVHVNLEAGKVDVSFDADKVSVKDIADAIEDQGYDVA 68 (69)
T ss_dssp EEEEEEEECCCSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEECTTTCCHHHHHHHHHHTTCEEC
T ss_pred eEEEEEECCcccHHHHHHHHHHHhcCCCeeEEEEEecCCEEEEEECCCCCCHHHHHHHHHHcCCCcc
Confidence 35679997 79999999999999999999 799999999999984 3578999999999 99763
No 24
>1yg0_A COP associated protein; open-faced beta-sandwich, missing C-terminal beta-sheet, Met transport; NMR {Helicobacter pylori}
Probab=99.29 E-value=8.8e-12 Score=76.64 Aligned_cols=60 Identities=15% Similarity=0.184 Sum_probs=53.7
Q ss_pred eEEEEEEe-ecChhhHHHHHHHHhccCCe-eEEEeCCCCEEEEEee--cCHHHHHHHHhc-CCce
Q 048021 11 MTCGLKVD-TNDPAWFSSMTKVLRKIKGA-SYTIDAEEGMAYITGR--ANPRKLLRKLQS-GKYA 70 (143)
Q Consensus 11 ~tvvlkV~-m~C~gC~~kIkkaL~kI~GV-sV~VDle~~~VtV~G~--vdp~~Ll~aI~k-Gk~A 70 (143)
++.+|+|. |+|.+|+++|+++|.+++|| ++.+|+..++++|... .+++.|.++|++ ||.+
T Consensus 1 ~~~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~i~~~i~~~G~~~ 65 (66)
T 1yg0_A 1 MKATFQVPSITCNHCVDKIEKFVGEIEGVSFIDVSVEKKSVVVEFDAPATQDLIKEALLDAGQEV 65 (66)
T ss_dssp CEEEECCTTCSCSHHHHHHHHHHTTSSSEEEEEEETTTTEEEEEECTTCCHHHHHHHHHHHTCCC
T ss_pred CeEEEEECCcccHHHHHHHHHHHhcCCCceEEEEEcCCCEEEEEECCCCCHHHHHHHHHHcCCCc
Confidence 35678886 89999999999999999999 7999999999999854 478999999999 9975
No 25
>1mwy_A ZNTA; open-faced beta-sandwich fold, beta-alpha-beta-BETA-alpha- beta, hydrolase; NMR {Escherichia coli} SCOP: d.58.17.1 PDB: 1mwz_A
Probab=99.29 E-value=2.8e-11 Score=76.96 Aligned_cols=62 Identities=13% Similarity=0.094 Sum_probs=55.0
Q ss_pred eEEEEEEe-ecChhhHHHHHHHHhccCCe-eEEEeCCCCEEEEEeec-CHHHHHHHHhc-CCceEE
Q 048021 11 MTCGLKVD-TNDPAWFSSMTKVLRKIKGA-SYTIDAEEGMAYITGRA-NPRKLLRKLQS-GKYANL 72 (143)
Q Consensus 11 ~tvvlkV~-m~C~gC~~kIkkaL~kI~GV-sV~VDle~~~VtV~G~v-dp~~Ll~aI~k-Gk~Ael 72 (143)
++++|+|+ |+|.+|+.+|+++|.+++|| ++.+|+..++++|.... ..+.|+++|++ ||.+..
T Consensus 3 ~~~~~~v~gm~C~~C~~~ie~~l~~~~gV~~~~v~~~~~~~~v~~~~~~~~~i~~~i~~~Gy~~~~ 68 (73)
T 1mwy_A 3 TRYSWKVSGMDCAACARKVENAVRQLAGVNQVQVLFATEKLVVDADNDIRAQVESALQKAGYSLRD 68 (73)
T ss_dssp EEEEEEEESCCSTTHHHHHHHHHHTSSSEEEEEEETTTTEEEEEESSCCHHHHHHHHHHHTCEEEE
T ss_pred eEEEEEECCcCCHHHHHHHHHHHhcCCCeeEEEEEecCCEEEEEECCCCHHHHHHHHHHcCCcccc
Confidence 56789997 89999999999999999999 79999999999998643 37789999999 998764
No 26
>1yjr_A Copper-transporting ATPase 1; metallochaperone, protein-protein interaction, copper(I), metal homeostasis, structural proteomics in europe, spine; NMR {Homo sapiens} PDB: 1yjt_A 1yju_A 1yjv_A
Probab=99.28 E-value=1.3e-11 Score=77.82 Aligned_cols=65 Identities=18% Similarity=0.217 Sum_probs=56.8
Q ss_pred eEEEEEEe-ecChhhHHHHHHHHhccCCe-eEEEeCCCCEEEEEee---cCHHHHHHHHhc-CCceEEeec
Q 048021 11 MTCGLKVD-TNDPAWFSSMTKVLRKIKGA-SYTIDAEEGMAYITGR---ANPRKLLRKLQS-GKYANLCWV 75 (143)
Q Consensus 11 ~tvvlkV~-m~C~gC~~kIkkaL~kI~GV-sV~VDle~~~VtV~G~---vdp~~Ll~aI~k-Gk~Ael~~~ 75 (143)
.+++|+|. |+|.+|+.+|+++|.+++|| ++.+|+..++++|... ++++.|+++|++ ||.+.+..+
T Consensus 4 ~~~~~~v~gm~C~~c~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~G~~~~~~~~ 74 (75)
T 1yjr_A 4 GVLELVVRGMTCASCVHKIESSLTKHRGILYCSVALATNKAHIKYDPEIIGPRDIIHTIESLGFEPSLVKI 74 (75)
T ss_dssp CCEEEEEETCCTTTHHHHHHHHHTTSTTEEEEEEETTTTEEEEEECTTTTHHHHHHHHHHHHHCEEEESSC
T ss_pred eEEEEEECCcccHHHHHHHHHHHHcCCCEEEEEEEecCCEEEEEECCCCCCHHHHHHHHHHcCCCceeecc
Confidence 35689996 79999999999999999999 7999999999999864 467889999999 999876543
No 27
>2ldi_A Zinc-transporting ATPase; metal homeostasis, metallochaperones, hydrolase; NMR {Synechocystis SP}
Probab=99.27 E-value=1.3e-11 Score=76.25 Aligned_cols=62 Identities=18% Similarity=0.236 Sum_probs=55.3
Q ss_pred ceEEEEEEe-ecChhhHHHHHHHHhccCCe-eEEEeCCCCEEEEEe---ecCHHHHHHHHhc-CCceE
Q 048021 10 KMTCGLKVD-TNDPAWFSSMTKVLRKIKGA-SYTIDAEEGMAYITG---RANPRKLLRKLQS-GKYAN 71 (143)
Q Consensus 10 ~~tvvlkV~-m~C~gC~~kIkkaL~kI~GV-sV~VDle~~~VtV~G---~vdp~~Ll~aI~k-Gk~Ae 71 (143)
.++.+|+|+ |+|.+|+.+|+++|.+++|| ++.+|+..++++|.. .++++.|.++|++ ||.++
T Consensus 2 ~~~~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~G~~~~ 69 (71)
T 2ldi_A 2 LKTQQMQVGGMRCAACASSIERALERLKGVAEASVTVATGRLTVTYDPKQVSEITIQERIAALGYTLA 69 (71)
T ss_dssp CEEEEEEEETCTTSGGGHHHHTGGGGCSSEEEEEEETTTTEEEEEECTTTCCTHHHHHHHHTTTCEEE
T ss_pred cEEEEEEECCccCHHHHHHHHHHHhcCCCeeEEEEEecCCEEEEEECCCCCCHHHHHHHHHHcCCCcc
Confidence 456789997 89999999999999999999 799999999999984 3578899999999 99864
No 28
>1y3j_A Copper-transporting ATPase 1; ferrodoxin-like fold, beta-alpha-beta-BETA-alpha-beta structure, structural proteomics in europe, spine; NMR {Homo sapiens} PDB: 1y3k_A
Probab=99.27 E-value=1.4e-11 Score=79.05 Aligned_cols=65 Identities=17% Similarity=0.209 Sum_probs=57.8
Q ss_pred eEEEEEEe-ecChhhHHHHHHHHhccCCe-eEEEeCCCCEEEEEee---cCHHHHHHHHhc-CCceEEeec
Q 048021 11 MTCGLKVD-TNDPAWFSSMTKVLRKIKGA-SYTIDAEEGMAYITGR---ANPRKLLRKLQS-GKYANLCWV 75 (143)
Q Consensus 11 ~tvvlkV~-m~C~gC~~kIkkaL~kI~GV-sV~VDle~~~VtV~G~---vdp~~Ll~aI~k-Gk~Ael~~~ 75 (143)
++++|+|. |+|.+|+.+|+++|.+++|| ++.+|+..++++|... ++++.|+++|++ ||.+.++..
T Consensus 3 ~~~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~~~~~~~ 73 (77)
T 1y3j_A 3 SKCYIQVTGMTCASCVANIERNLRREEGIYSILVALMAGKAEVRYNPAVIQPPMIAEFIRELGFGATVIEN 73 (77)
T ss_dssp EEEEEEESCGGGCSHHHHHHHHHTTSSSEEECCCBTTTTBEEEEECTTTSCHHHHHHHHHHHTSCEEEESC
T ss_pred EEEEEEECCeeCHHHHHHHHHHHhcCCCeEEEEEEecCCEEEEEECCCCCCHHHHHHHHHHcCCceEECCc
Confidence 56789996 79999999999999999999 7999999999999853 578999999999 999887643
No 29
>2kt2_A Mercuric reductase; nmera, MERA, HMA domain, mercuric resist metal-binding, oxidoreductase; NMR {Pseudomonas aeruginosa} PDB: 2kt3_A
Probab=99.26 E-value=1.7e-11 Score=76.60 Aligned_cols=60 Identities=22% Similarity=0.278 Sum_probs=53.8
Q ss_pred EEEEe-ecChhhHHHHHHHHhccCCe-eEEEeCCCCEEEEEee--cCHHHHHHHHhc-CCceEEe
Q 048021 14 GLKVD-TNDPAWFSSMTKVLRKIKGA-SYTIDAEEGMAYITGR--ANPRKLLRKLQS-GKYANLC 73 (143)
Q Consensus 14 vlkV~-m~C~gC~~kIkkaL~kI~GV-sV~VDle~~~VtV~G~--vdp~~Ll~aI~k-Gk~Ael~ 73 (143)
+|+|. |+|.+|+.+|+++|++++|| ++.+|+..++++|... .+++.|+++|++ ||.+++.
T Consensus 3 ~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~i~~~i~~~Gy~~~~~ 67 (69)
T 2kt2_A 3 HLKITGMTCDSCAAHVKEALEKVPGVQSALVSYPKGTAQLAIVPGTSPDALTAAVAGLGYKATLA 67 (69)
T ss_dssp CEEEESSCSTHHHHHHHHHHHHSTTEEEEEEETTTTEEEEEECTTSCHHHHHHHHHTTTSEEECC
T ss_pred EEEECCcccHHHHHHHHHHHHcCCCeeEEEEEccCCEEEEEECCCCCHHHHHHHHHHCCCceEeC
Confidence 57885 89999999999999999999 7999999999999753 578999999999 9988754
No 30
>2kkh_A Putative heavy metal transporter; zinc transport, metal binding, metal selectivity, ferredoxin fold, ATP-binding, hydrolase; NMR {Arabidopsis thaliana}
Probab=99.26 E-value=6.1e-11 Score=80.21 Aligned_cols=73 Identities=11% Similarity=0.098 Sum_probs=63.4
Q ss_pred CceEEEEEEe-ecChhhHHHHHHHHhccCCe-eEEEeCCCCEEEEEee---cCHHHHHHHHhc-CCceEEeecCCCCCC
Q 048021 9 AKMTCGLKVD-TNDPAWFSSMTKVLRKIKGA-SYTIDAEEGMAYITGR---ANPRKLLRKLQS-GKYANLCWVSAGNQI 81 (143)
Q Consensus 9 ~~~tvvlkV~-m~C~gC~~kIkkaL~kI~GV-sV~VDle~~~VtV~G~---vdp~~Ll~aI~k-Gk~Ael~~~~~~~s~ 81 (143)
..++++|+|. |+|.+|+.+|+++|.+++|| ++.+|+..++++|... ++++.|+++|++ ||.+.+...+.+++.
T Consensus 14 ~~~~~~~~v~gm~C~~C~~~ie~~l~~~~GV~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~~~~~~~~~~~~~ 92 (95)
T 2kkh_A 14 KLQKSYFDVLGICCTSEVPIIENILKSLDGVKEYSVIVPSRTVIVVHDSLLISPFQIAKALNEARLEANVRVNGETSFK 92 (95)
T ss_dssp CSEEEEEEETTCCTTTTHHHHHHHHHHSSSEEEEEEETTTTEEEEEECTTTCCHHHHHHHHHHHTCCEEESCCCCCCSS
T ss_pred ceEEEEEEECCcCCHHHHHHHHHHHhcCCCeeEEEEEccCCEEEEEECCCCCCHHHHHHHHHHcCCceEEecCCCcccc
Confidence 3456889996 89999999999999999999 7999999999999854 478999999999 999998877666553
No 31
>2g9o_A Copper-transporting ATPase 1; menkes disease, solution structure, structural genomics, structural proteomics in europe, spine, hydrolase; NMR {Homo sapiens} PDB: 2ga7_A
Probab=99.22 E-value=4.3e-11 Score=80.94 Aligned_cols=67 Identities=15% Similarity=0.200 Sum_probs=57.8
Q ss_pred ceEEEEEEe-ecChhhHHHHHHHHhccCCe-eEEEeCCCCEEEEEe---ecCHHHHHHHHhc---C-CceEEeecC
Q 048021 10 KMTCGLKVD-TNDPAWFSSMTKVLRKIKGA-SYTIDAEEGMAYITG---RANPRKLLRKLQS---G-KYANLCWVS 76 (143)
Q Consensus 10 ~~tvvlkV~-m~C~gC~~kIkkaL~kI~GV-sV~VDle~~~VtV~G---~vdp~~Ll~aI~k---G-k~Ael~~~~ 76 (143)
.++++|+|. |+|.+|+.+|+++|++++|| ++.||+..++++|.. .++++.|+++|++ | |++.++...
T Consensus 2 ~~~~~l~v~Gm~C~~C~~~Ie~~L~~~~GV~~v~v~l~~~~~~V~~~~~~~~~~~i~~~i~~~g~Ggy~~~~~~~~ 77 (90)
T 2g9o_A 2 DSTATFIIDGMHCKSCVSNIESTLSALQYVSSIVVSLENRSAIVVYNASSVTPESLRKAIEAVSPGLYRVSITSEV 77 (90)
T ss_dssp CEEEEEEEESCCHHHHHHHHHHHHTTCTTEEEEEEETTTTEEEEEECCSSCCTHHHHHHHHTTSTTTCEEECCCCC
T ss_pred CcEEEEEECCcCCHHHHHHHHHHHHcCCCeeEEEEEccCCEEEEEECCCCCCHHHHHHHHHhccCCCeEEEEeCCC
Confidence 367789996 89999999999999999999 799999999999985 3578899999987 5 888766543
No 32
>2ofg_X Zinc-transporting ATPase; ferredoxin-like fold, beta-alpha-beta-BETA-alpha-beta, struc genomics, hydrolase, membrane protein; NMR {Synechocystis SP} PDB: 2ofh_X
Probab=99.19 E-value=1e-10 Score=82.28 Aligned_cols=66 Identities=14% Similarity=0.135 Sum_probs=58.0
Q ss_pred CCceEEEEEEe-ecChhhHHHHHHHHhccCCe-eEEEeCCCCEEEEEee---cCHHHHHHHHhc-CCceEEe
Q 048021 8 SAKMTCGLKVD-TNDPAWFSSMTKVLRKIKGA-SYTIDAEEGMAYITGR---ANPRKLLRKLQS-GKYANLC 73 (143)
Q Consensus 8 s~~~tvvlkV~-m~C~gC~~kIkkaL~kI~GV-sV~VDle~~~VtV~G~---vdp~~Ll~aI~k-Gk~Ael~ 73 (143)
+..++++|+|+ |+|.+|+++|+++|++++|| ++.||+..++++|... ++++.|+++|++ ||.+...
T Consensus 5 ~~~~~~~l~v~Gm~C~~Ca~~Ie~~L~~~~GV~~v~v~~~~~~~~V~~~~~~~~~~~i~~~i~~~Gy~~~~~ 76 (111)
T 2ofg_X 5 SPLKTQQMQVGGMDCTSCKLKIEGSLERLKGVAEASVTVATGRLTVTYDPKQVSEITIQERIAALGYTLAEP 76 (111)
T ss_dssp -CCEEEEEEESCCCGGGTHHHHHHHHTTSSSEEEEEEETTTTEEEEEECTTTCSHHHHHHHHHTTTCCEECC
T ss_pred CcceEEEEEECCcCCHHHHHHHHHHHHcCCCeeEEEEECCCCEEEEEECCCCCCHHHHHHHHHHcCCeeeec
Confidence 34567889997 89999999999999999999 7999999999999854 578999999999 9998653
No 33
>2ew9_A Copper-transporting ATPase 2; copper trafficking, ferrodoxin-like fold, structural genomics, structural proteomics in europe, spine, hydrolase; NMR {Homo sapiens}
Probab=99.18 E-value=8.9e-11 Score=83.53 Aligned_cols=64 Identities=14% Similarity=0.232 Sum_probs=57.3
Q ss_pred ceEEEEEEe-ecChhhHHHHHHHHhccCCe-eEEEeCCCCEEEEEee---cCHHHHHHHHhc-CCceEEe
Q 048021 10 KMTCGLKVD-TNDPAWFSSMTKVLRKIKGA-SYTIDAEEGMAYITGR---ANPRKLLRKLQS-GKYANLC 73 (143)
Q Consensus 10 ~~tvvlkV~-m~C~gC~~kIkkaL~kI~GV-sV~VDle~~~VtV~G~---vdp~~Ll~aI~k-Gk~Ael~ 73 (143)
..+++|+|+ |+|.+|+.+|+++|++++|| ++.+|+..++++|... ++++.|+++|++ ||+++++
T Consensus 79 ~~~~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~~~~~ 148 (149)
T 2ew9_A 79 DGNIELTITGMTCASCVHNIESKLTRTNGITYASVALATSKALVKFDPEIIGPRDIIKIIEEIGFHASLA 148 (149)
T ss_dssp SSEEEEEEESCCSHHHHHHHHHHHHHSSSCCEEEEETTTTEEEEECCTTTSCHHHHHHHHHHHTCEEECC
T ss_pred cceeEEEEEeccCHHHHHHHHHHHhcCCCeEEEEEEcCCCEEEEEECCCCCCHHHHHHHHHhCCCceEec
Confidence 356889996 89999999999999999999 8999999999999853 588999999999 9998753
No 34
>1jww_A Potential copper-transporting ATPase; beta-alpha-beta-BETA-alpha-beta, hydrolase; NMR {Bacillus subtilis} SCOP: d.58.17.1 PDB: 2voy_A 1kqk_A
Probab=99.16 E-value=7.3e-11 Score=75.40 Aligned_cols=64 Identities=16% Similarity=0.142 Sum_probs=57.0
Q ss_pred eEEEEEEe-ecChhhHHHHHHHHhccCCe-eEEEeCCCCEEEEEe---ecCHHHHHHHHhc-CCceEEee
Q 048021 11 MTCGLKVD-TNDPAWFSSMTKVLRKIKGA-SYTIDAEEGMAYITG---RANPRKLLRKLQS-GKYANLCW 74 (143)
Q Consensus 11 ~tvvlkV~-m~C~gC~~kIkkaL~kI~GV-sV~VDle~~~VtV~G---~vdp~~Ll~aI~k-Gk~Ael~~ 74 (143)
++.+|+|. |+|.+|+.+|+++|.+++|| ++.+|+..++++|.. .++++.|.++|++ ||.+.+..
T Consensus 3 ~~~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~G~~~~~~~ 72 (80)
T 1jww_A 3 EKAEFDIEGMTCAACANRIEKRLNKIEGVANAPVNFALETVTVEYNPKEASVSDLKEAVDKLGYKLKLKG 72 (80)
T ss_dssp EEEEEEEESCCCHHHHHHHHHHHHTSTTEEECCCCSSSSEEEEEECTTTCCHHHHHHHHHHHTSEEEECC
T ss_pred eEEEEEECCccCHHHHHHHHHHHhcCCCeEEEEEEecCCEEEEEECCCCCCHHHHHHHHHHcCCeEEecC
Confidence 46789997 79999999999999999999 799999999999974 3578999999999 99988754
No 35
>1p6t_A Potential copper-transporting ATPase; COPA, P-type ATPase, water-soluble region, beta-alpha-beta- beta-alpha-beta fold; NMR {Bacillus subtilis} SCOP: d.58.17.1 d.58.17.1 PDB: 2rml_A
Probab=99.16 E-value=7.7e-11 Score=84.44 Aligned_cols=65 Identities=15% Similarity=0.130 Sum_probs=58.3
Q ss_pred eEEEEEEe-ecChhhHHHHHHHHhccCCe-eEEEeCCCCEEEEEe---ecCHHHHHHHHhc-CCceEEeec
Q 048021 11 MTCGLKVD-TNDPAWFSSMTKVLRKIKGA-SYTIDAEEGMAYITG---RANPRKLLRKLQS-GKYANLCWV 75 (143)
Q Consensus 11 ~tvvlkV~-m~C~gC~~kIkkaL~kI~GV-sV~VDle~~~VtV~G---~vdp~~Ll~aI~k-Gk~Ael~~~ 75 (143)
.+++|+|+ |+|.+|+.+|+++|++++|| ++.+|+..++++|.- .++++.|+++|++ ||++.+...
T Consensus 74 ~~~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~~~~~~~ 144 (151)
T 1p6t_A 74 EKAEFDIEGMTCAACANRIEKRLNKIEGVANAPVNFALETVTVEYNPKEASVSDLKEAVDKLGYKLKLKGE 144 (151)
T ss_dssp EEEEEEESSCCSSSHHHHHHHHHTTSSSEEECCEETTTTEEEEEECTTTCCHHHHHHHHHHHTCCEEESCS
T ss_pred cccEEEecCCCCHHHHHHHHHHHhcCCCceEEEEEccCCEEEEEECCCCCCHHHHHHHHHHcCCCeEEcCc
Confidence 46789996 89999999999999999999 799999999999984 4689999999999 999987543
No 36
>2aj0_A Probable cadmium-transporting ATPase; ferrodoxin-like fold, beta-alpha-beta-BETA-alpha-beta, metal binding protein, hydrolase; NMR {Listeria monocytogenes} PDB: 2aj1_A
Probab=99.16 E-value=5.1e-11 Score=75.55 Aligned_cols=62 Identities=15% Similarity=0.300 Sum_probs=52.8
Q ss_pred eEEEEEEe-ecChhhHHHHHHHHhccCCe-eEEEeCCCCEEEEEeecCHHHHHHHHhc-CCceEEeecC
Q 048021 11 MTCGLKVD-TNDPAWFSSMTKVLRKIKGA-SYTIDAEEGMAYITGRANPRKLLRKLQS-GKYANLCWVS 76 (143)
Q Consensus 11 ~tvvlkV~-m~C~gC~~kIkkaL~kI~GV-sV~VDle~~~VtV~G~vdp~~Ll~aI~k-Gk~Ael~~~~ 76 (143)
++.+|+|+ |+|.+|+.+|+++|.+++|| ++.+|+..++++|.+..+ .++|++ ||.+.+....
T Consensus 3 ~~~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~~~~~v~~~~~----~~~i~~~Gy~~~~~~~~ 67 (71)
T 2aj0_A 3 EKTVYRVDGLSCTNCAAKFERNVKEIEGVTEAIVNFGASKITVTGEAS----IQQVEQAGAFEHLKIIP 67 (71)
T ss_dssp CEEEEEEESCCCHHHHHHHHHHHHHSTTEEEEEECCSSEEEEEEESCC----HHHHHHHHTTTTCEEEC
T ss_pred eEEEEEECCcccHHHHHHHHHHHHcCCCeEEEEEECCCCEEEEEecCc----HHHHHHhCCCcccccCC
Confidence 36789997 89999999999999999999 799999999999997664 557788 9987665543
No 37
>2rop_A Copper-transporting ATPase 2; wilson protein, mobility, protein-protein interaction, alternative splicing, ATP-binding, copper transport cytoplasm; NMR {Homo sapiens}
Probab=99.14 E-value=1.4e-10 Score=88.40 Aligned_cols=71 Identities=15% Similarity=0.213 Sum_probs=57.9
Q ss_pred eEEEEEEe-ecChhhHHHHHHHHhccCCe-eEEEeCCCCEEEEEe---ecCHHHHHHHHhc-CCceEEeecCCCCCC
Q 048021 11 MTCGLKVD-TNDPAWFSSMTKVLRKIKGA-SYTIDAEEGMAYITG---RANPRKLLRKLQS-GKYANLCWVSAGNQI 81 (143)
Q Consensus 11 ~tvvlkV~-m~C~gC~~kIkkaL~kI~GV-sV~VDle~~~VtV~G---~vdp~~Ll~aI~k-Gk~Ael~~~~~~~s~ 81 (143)
.+++|+|. |+|.+|+.+|+++|.+++|| ++.||+..++++|.. .++++.|+++|++ ||.+.++.....+++
T Consensus 122 ~~~~l~v~Gm~C~~C~~~ie~~l~~~~GV~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~~~~~~~~~~~~~ 198 (202)
T 2rop_A 122 STTLIAIAGMTCASCVHSIEGMISQLEGVQQISVSLAEGTATVLYNPAVISPEELRAAIEDMGFEASVVSESCSTNP 198 (202)
T ss_dssp EEEEEEESCCCSTHHHHHHHHHGGGSSSEEEEEEETTTTEEEEEECTTTCCHHHHHHHHHHHTSCEEEC--------
T ss_pred eEEEEEECCccCHHHHHHHHHHHHcCCCeEEEEEEccCCEEEEEECCCCCCHHHHHHHHHHcCCceEEcCCCCCccc
Confidence 56889996 89999999999999999999 799999999999985 3588999999999 999988766544444
No 38
>2ew9_A Copper-transporting ATPase 2; copper trafficking, ferrodoxin-like fold, structural genomics, structural proteomics in europe, spine, hydrolase; NMR {Homo sapiens}
Probab=99.00 E-value=1.8e-09 Score=76.67 Aligned_cols=65 Identities=22% Similarity=0.224 Sum_probs=57.4
Q ss_pred ceEEEEEEe-ecChhhHHHHHHHHhccCCe-eEEEeCCCCEEEEEe---ecCHHHHHHHHhc-CCceEEee
Q 048021 10 KMTCGLKVD-TNDPAWFSSMTKVLRKIKGA-SYTIDAEEGMAYITG---RANPRKLLRKLQS-GKYANLCW 74 (143)
Q Consensus 10 ~~tvvlkV~-m~C~gC~~kIkkaL~kI~GV-sV~VDle~~~VtV~G---~vdp~~Ll~aI~k-Gk~Ael~~ 74 (143)
.++++|+|+ |+|.+|+.+|+++|.+++|| ++.+++..++++|.. .++++.|.++|++ ||.+.+..
T Consensus 3 ~~~~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~G~~~~~~~ 73 (149)
T 2ew9_A 3 PQKCFLQIKGMTCASCVSNIERNLQKEAGVLSVLVALMAGKAEIKYDPEVIQPLEIAQFIQDLGFEAAVME 73 (149)
T ss_dssp CEEEEEEEECCCSSSHHHHHHHHHHTTSSCCCEEEETTTTEEEEEECTTTCCHHHHHHHHHHHTCEEEECS
T ss_pred cEEEEEEECCeecHHHHHHHHHHHhcCCCcEEEEEEecCCEEEEEEcCCCCCHHHHHHHHhcCCCceEeec
Confidence 457889996 79999999999999999999 799999999999975 3578899999999 99987653
No 39
>1p6t_A Potential copper-transporting ATPase; COPA, P-type ATPase, water-soluble region, beta-alpha-beta- beta-alpha-beta fold; NMR {Bacillus subtilis} SCOP: d.58.17.1 d.58.17.1 PDB: 2rml_A
Probab=98.84 E-value=1e-08 Score=73.25 Aligned_cols=61 Identities=11% Similarity=0.197 Sum_probs=53.8
Q ss_pred ceEEEEEEe-ecChhhHHHHHHHHhccCCe-eEEEeCCCCEEEEEe---ecCHHHHHHHHhc-CCce
Q 048021 10 KMTCGLKVD-TNDPAWFSSMTKVLRKIKGA-SYTIDAEEGMAYITG---RANPRKLLRKLQS-GKYA 70 (143)
Q Consensus 10 ~~tvvlkV~-m~C~gC~~kIkkaL~kI~GV-sV~VDle~~~VtV~G---~vdp~~Ll~aI~k-Gk~A 70 (143)
.++.+|+|+ |+|.+|+.+|+++|.+++|| ++.+++..++++|.. .+++..|.++|++ |+.+
T Consensus 5 ~~~~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~G~~~ 71 (151)
T 1p6t_A 5 QKEIAMQVSGMTCAACAARIEKGLKRMPGVTDANVNLATETVNVIYDPAETGTAAIQEKIEKLGYHV 71 (151)
T ss_dssp CEEEEEEEESCCSSHHHHHHHHHHTTSSSEEEEEEEGGGTEEEEEECTTTSCHHHHHHHHHHHTCEE
T ss_pred ceEEEEEECCCcCHHHHHHHHHHHhcCCCeeEEEEEccCCEEEEEEcCCcCCHHHHHHHHHHcCCcc
Confidence 366789997 79999999999999999999 799999999999874 3578899999999 9965
No 40
>2rop_A Copper-transporting ATPase 2; wilson protein, mobility, protein-protein interaction, alternative splicing, ATP-binding, copper transport cytoplasm; NMR {Homo sapiens}
Probab=98.72 E-value=3.9e-08 Score=74.70 Aligned_cols=62 Identities=16% Similarity=0.225 Sum_probs=53.7
Q ss_pred ceEEEEEEe-ecChhhHHHHHHHHhccCCe-eEEEeCCCCEEEEEee---cCHHHHHHHHhc-C---CceE
Q 048021 10 KMTCGLKVD-TNDPAWFSSMTKVLRKIKGA-SYTIDAEEGMAYITGR---ANPRKLLRKLQS-G---KYAN 71 (143)
Q Consensus 10 ~~tvvlkV~-m~C~gC~~kIkkaL~kI~GV-sV~VDle~~~VtV~G~---vdp~~Ll~aI~k-G---k~Ae 71 (143)
.++++|+|+ |+|.+|+.+|+++|.+++|| ++.|++..++++|... ++++.|.++|++ | +.+.
T Consensus 19 ~~~~~l~v~Gm~C~~C~~~ie~~l~~~~GV~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~~~gg~~v~ 89 (202)
T 2rop_A 19 VVTLQLRIDGMHCKSCVLNIEENIGQLLGVQSIQVSLENKTAQVKYDPSCTSPVALQRAIEALPPGNFKVS 89 (202)
T ss_dssp -CEEEEEEESGGGSTHHHHHHHHTTSBTTEEEEEEETTTTEEEEEECTTTCCHHHHHHHHTTSSSSCSEEE
T ss_pred cEEEEEEECCeEcHHHHHHHHHHHhcCCCeEEEEEEecCCEEEEEECCCCCCHHHHHHHHHHhccCCeEEE
Confidence 457789997 89999999999999999999 7999999999999853 578899999998 4 5554
No 41
>3j09_A COPA, copper-exporting P-type ATPase A; copper transporter, adenosine triphosph archaeal proteins, cation transport proteins; 10.00A {Archaeoglobus fulgidus}
Probab=98.63 E-value=5.4e-08 Score=88.43 Aligned_cols=62 Identities=15% Similarity=0.204 Sum_probs=56.9
Q ss_pred ceEEEEEEe-ecChhhHHHHHHHHhccCCe-eEEEeCCCCEEEEEe---ecCHHHHHHHHhc-CCceE
Q 048021 10 KMTCGLKVD-TNDPAWFSSMTKVLRKIKGA-SYTIDAEEGMAYITG---RANPRKLLRKLQS-GKYAN 71 (143)
Q Consensus 10 ~~tvvlkV~-m~C~gC~~kIkkaL~kI~GV-sV~VDle~~~VtV~G---~vdp~~Ll~aI~k-Gk~Ae 71 (143)
+|+++|+|+ |+|.+|+.+|+++|++++|| +++||+..++++|+- .+++++|+++|++ ||++.
T Consensus 1 pm~~~l~V~GM~Ca~Ca~~Ie~~L~~~~GV~~v~Vnl~~~~~~V~~d~~~~~~~~i~~ai~~~Gy~~~ 68 (723)
T 3j09_A 1 PMERTVRVTGMTCAMCVKSIETAVGSLEGVEEVRVNLATETAFIRFDEKRIDFETIKRVIEDLGYGVV 68 (723)
T ss_dssp CCCEEEEEETCCSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEECTTTCCHHHHHHHHHHHCCEES
T ss_pred CeeEEEEeCCCCchHHHHHHHHHHhcCCCceEEEEEcCCCEEEEEeCCCcCCHHHHHHHHHhcCCccc
Confidence 367899997 89999999999999999999 799999999999984 4689999999999 99975
No 42
>3bpd_A Uncharacterized protein; heptamer, Mg+2 ION, PSI-2, NYSGXRC, structural genom protein structure initiative; 2.80A {Archaeoglobus fulgidus dsm 4304} SCOP: d.58.61.1
Probab=89.70 E-value=2 Score=30.68 Aligned_cols=63 Identities=13% Similarity=0.053 Sum_probs=41.9
Q ss_pred CCceEEEEEEeecChhhHHHHHHHHhccCCe-eE-----EEeCCC--CEEEEEee-cCHHHHHHHHhc-CCce
Q 048021 8 SAKMTCGLKVDTNDPAWFSSMTKVLRKIKGA-SY-----TIDAEE--GMAYITGR-ANPRKLLRKLQS-GKYA 70 (143)
Q Consensus 8 s~~~tvvlkV~m~C~gC~~kIkkaL~kI~GV-sV-----~VDle~--~~VtV~G~-vdp~~Ll~aI~k-Gk~A 70 (143)
...+.++|.|--.-+--.-.+.++|.+++|| .| ++|.+. =++||+|. +|-+.|.++|++ |--+
T Consensus 4 ~~iRRlVLDVlKPh~P~ivdlA~~l~~~~gV~gVnItV~EvD~eTe~lkItIEG~dIdfd~I~~~IE~~GgvI 76 (100)
T 3bpd_A 4 KGLRRLVLDVLKPHEPKTIVFALKLSELENVDGVNIHLSEIDQATENIKITILGNNLDYEQIKGVIEDMGGVI 76 (100)
T ss_dssp CSEEEEEEEEEEESCSCHHHHHHHHHTSTTEEEEEEEEEEECSSEEEEEEEEEEEEECHHHHHHHHHTTTCEE
T ss_pred ccceEEEEEecCCCCCCHHHHHHHHHhCCCcceEEEEEEEeeccccEEEEEEEecCCCHHHHHHHHHHcCCeE
Confidence 3456777777421222334677788888887 33 445553 35666685 899999999999 8654
No 43
>3cq1_A Putative uncharacterized protein TTHB138; DTDP-4-keto-L-rhamnose reductase, plasmid, oxidoreductase, structural genomics, NPPSFA; 1.90A {Thermus thermophilus} PDB: 2cu6_A 3cq2_A 3cq3_A*
Probab=88.91 E-value=0.61 Score=32.10 Aligned_cols=34 Identities=9% Similarity=0.290 Sum_probs=26.4
Q ss_pred EEEEEEeecChhhH------HHHHHHHhccCCe-eEEEeCC
Q 048021 12 TCGLKVDTNDPAWF------SSMTKVLRKIKGA-SYTIDAE 45 (143)
Q Consensus 12 tvvlkV~m~C~gC~------~kIkkaL~kI~GV-sV~VDle 45 (143)
.+.+.+.+++.+|. +.|+++|++++|| +|+|++.
T Consensus 42 ~V~v~l~lt~~~cp~~~~l~~~i~~al~~l~gv~~V~V~l~ 82 (103)
T 3cq1_A 42 RAYVRMTLTTPGCPLHDSLGEAVRQALSRLPGVEEVEVEVT 82 (103)
T ss_dssp EEEEEECCSSSSCCSSCHHHHHHHHHHHTSTTCCEEEEEEC
T ss_pred EEEEEEEECCCCCcHHHHHHHHHHHHHHhCCCceeEEEEEe
Confidence 46677777888884 6799999999999 6777643
No 44
>2jsx_A Protein NAPD; TAT, proofreading, cytoplasm, chaperone; NMR {Escherichia coli K12} PDB: 2pq4_A
Probab=88.49 E-value=1.4 Score=30.56 Aligned_cols=45 Identities=18% Similarity=0.318 Sum_probs=32.2
Q ss_pred hhhHHHHHHHHhccCCeeE-EEeCCCCEEEEEee-cCHHHHHHHHhc
Q 048021 22 PAWFSSMTKVLRKIKGASY-TIDAEEGMAYITGR-ANPRKLLRKLQS 66 (143)
Q Consensus 22 ~gC~~kIkkaL~kI~GVsV-~VDle~~~VtV~G~-vdp~~Ll~aI~k 66 (143)
.+=...|.++|++++||++ .+|.+++++.|.-+ -+.+.|.+.|++
T Consensus 16 p~~~~~V~~~L~~ipgvEi~~~~~~~GkiVV~iEa~~~~~l~~~i~~ 62 (95)
T 2jsx_A 16 SERISDISTQLNAFPGCEVAVSDAPSGQLIVVVEAEDSETLIQTIES 62 (95)
T ss_dssp TTSHHHHHHHHTTSTTEEEEEEETTTTEEEEEEEESSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHCCCCeEEEEecCCCCCEEEEEEeCCHHHHHHHHHH
Confidence 4557899999999999975 45777888888754 355555555544
No 45
>3lno_A Putative uncharacterized protein; alpha-beta fold, structural genomics, center for structural genomics of infectious diseases, csgid; 2.10A {Bacillus anthracis} SCOP: d.52.8.0
Probab=88.01 E-value=0.51 Score=32.95 Aligned_cols=34 Identities=12% Similarity=0.197 Sum_probs=26.5
Q ss_pred EEEEEEeecChhh------HHHHHHHH-hccCCe-eEEEeCC
Q 048021 12 TCGLKVDTNDPAW------FSSMTKVL-RKIKGA-SYTIDAE 45 (143)
Q Consensus 12 tvvlkV~m~C~gC------~~kIkkaL-~kI~GV-sV~VDle 45 (143)
.+.+.+.++..+| .+.|+++| ++++|| +|+|++.
T Consensus 45 ~V~V~ltlt~p~cp~~~~i~~~i~~al~~~l~Gv~~V~V~l~ 86 (108)
T 3lno_A 45 NAVITMTMTSIGCPMAGQIVSDVKKVLSTNVPEVNEIEVNVV 86 (108)
T ss_dssp CEEEEECCSCTTCTTHHHHHHHHHHHHHHHCTTCCCEEEEEC
T ss_pred eEEEEEEECCCCCcHHHHHHHHHHHHHHHhCCCCceEEEEEE
Confidence 4667777788888 67899999 899999 6766554
No 46
>2x3d_A SSO6206; unknown function; 2.70A {Sulfolobus solfataricus}
Probab=87.40 E-value=0.94 Score=32.16 Aligned_cols=60 Identities=20% Similarity=0.216 Sum_probs=39.9
Q ss_pred ceEEEEEEe--ecChhhHHHHHHHHhccCCe-eE-----EEeCCC--CEEEEEee-cCHHHHHHHHhc-CCce
Q 048021 10 KMTCGLKVD--TNDPAWFSSMTKVLRKIKGA-SY-----TIDAEE--GMAYITGR-ANPRKLLRKLQS-GKYA 70 (143)
Q Consensus 10 ~~tvvlkV~--m~C~gC~~kIkkaL~kI~GV-sV-----~VDle~--~~VtV~G~-vdp~~Ll~aI~k-Gk~A 70 (143)
.+.++|.|- ++=..= -.+.++|.+++|| .| ++|.+. =+++|+|. +|-+.|.++|++ |--+
T Consensus 4 irRlVLDVlKP~h~P~i-vd~A~~l~~~~gV~gVnItv~EvD~eTe~lkItIEG~~idfd~I~~~IE~~Gg~I 75 (96)
T 2x3d_A 4 IRRLVLDVLKPIRGTSI-VDLAERISKLDGVEGVNISVTDMDVETMGLMIIIEGTSLNFDDIRKMLEEEGCAI 75 (96)
T ss_dssp EEEEEEEEEEESSSSCH-HHHHHHHHTSTTEEEEEEEEEEECSSEEEEEEEEEESSCCHHHHHHHHHHTTCEE
T ss_pred eEEEEEEcccCCCCCCH-HHHHHHHHhCCCcceEEEEEEEeeccccEEEEEEEecCCCHHHHHHHHHHcCCeE
Confidence 345666663 233333 3667788888887 33 445553 35666785 899999999999 8644
No 47
>1uwd_A Hypothetical protein TM0487; similar to PAAD protein, alpha/beta fold,structural genomics joint center for structural genomics, JCSG; NMR {Thermotoga maritima} SCOP: d.52.8.2 PDB: 1wcj_A
Probab=86.23 E-value=1.1 Score=30.78 Aligned_cols=33 Identities=15% Similarity=0.313 Sum_probs=25.4
Q ss_pred EEEEEEeecChhhH------HHHHHHHhccCCe-eEEEeC
Q 048021 12 TCGLKVDTNDPAWF------SSMTKVLRKIKGA-SYTIDA 44 (143)
Q Consensus 12 tvvlkV~m~C~gC~------~kIkkaL~kI~GV-sV~VDl 44 (143)
.+.+.+.+++.+|. +.|+++|++++|| +|+|++
T Consensus 43 ~V~v~l~lt~~~cp~~~~l~~~i~~al~~l~gv~~v~V~l 82 (103)
T 1uwd_A 43 NVKVLMTMTTPMCPLAGMILSDAEEAIKKIEGVNNVEVEL 82 (103)
T ss_dssp EEEEEECCSSSCCSSHHHHHHHHHHHHHTSSSCCEEEEEE
T ss_pred EEEEEEEECCCCCcHHHHHHHHHHHHHHhCCCcceEEEEE
Confidence 56677777777774 5689999999999 677764
No 48
>4ar0_A Type IV pilus biogenesis and competence protein P; transport, secretin type II secretion system; NMR {Neisseria meningitidis}
Probab=84.06 E-value=6.8 Score=28.20 Aligned_cols=60 Identities=10% Similarity=0.049 Sum_probs=44.1
Q ss_pred ceEEEEEEeecChhhHHHHHHHHhccCCeeEEEeCC-CCEEEEEe-ecCHHHHHHHHhc--CCceEE
Q 048021 10 KMTCGLKVDTNDPAWFSSMTKVLRKIKGASYTIDAE-EGMAYITG-RANPRKLLRKLQS--GKYANL 72 (143)
Q Consensus 10 ~~tvvlkV~m~C~gC~~kIkkaL~kI~GVsV~VDle-~~~VtV~G-~vdp~~Ll~aI~k--Gk~Ael 72 (143)
-.++.|.+. +-=.+.|-++|.++-|.++.+|.+ +|+||+.- .++.+++++.|.+ |+.++.
T Consensus 31 G~~isLnf~---da~i~~vl~~la~~tg~NiV~d~~V~G~VTl~l~~v~~~~al~~iL~~~gl~~~~ 94 (128)
T 4ar0_A 31 GRKISLDFQ---DVEIRTILQILAKESGMNIVASDSVNGKMTLSLKDVPWDQALDLVMQARNLDMRQ 94 (128)
T ss_dssp SCEEEEEEE---EEEHHHHHHHHHHTTCCEEEECTTCCCEEEEEEEEEEHHHHHHHHHHHHTEEEEE
T ss_pred CCceEEEEe---CCCHHHHHHHHHHHHCCcEEEcCCCCceeeEeecCCCHHHHHHHHHHHcCceEEE
Confidence 344444432 334678888999999999888876 89999984 5788888888877 887763
No 49
>2cpq_A FragIle X mental retardation syndrome related protein 1, isoform B'; KH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=83.39 E-value=3.1 Score=28.80 Aligned_cols=66 Identities=17% Similarity=0.165 Sum_probs=42.7
Q ss_pred CceEEEEEEee---c--ChhhHHHHHHHHhccCCee-EEEeCCCCEEEEEeecCHHHHHHHHhc-CCceEEeecC
Q 048021 9 AKMTCGLKVDT---N--DPAWFSSMTKVLRKIKGAS-YTIDAEEGMAYITGRANPRKLLRKLQS-GKYANLCWVS 76 (143)
Q Consensus 9 ~~~tvvlkV~m---~--C~gC~~kIkkaL~kI~GVs-V~VDle~~~VtV~G~vdp~~Ll~aI~k-Gk~Ael~~~~ 76 (143)
.....+|+|+- . -+.--+.|++ |.+.-|+. ++|+-++++|+|.| .+.+.+.+|++. -.-.+.+.++
T Consensus 13 ~~~i~~i~I~~dkIg~vIG~gGk~Ik~-I~e~tGv~~IdI~eddG~V~I~g-~~~ea~~~A~~~I~~ie~~~~vp 85 (91)
T 2cpq_A 13 AAFHEEFVVREDLMGLAIGTHGSNIQQ-ARKVPGVTAIELDEDTGTFRIYG-ESADAVKKARGFLEFVEDFIQVP 85 (91)
T ss_dssp CSEEEEEECCHHHHHHHHTTTTHHHHH-HHTSTTEEEEEEETTTTEEEEEE-SSHHHHHHHHHHHSCCCCCCCCC
T ss_pred CceEEEEEEChHHhhhhcCCCcHHHHH-HHHHhCCeEEEEEcCCCEEEEEE-CCHHHHHHHHHHHHhhheEEecC
Confidence 34566777762 2 2334455665 55557995 99987789999998 577777777766 4444444443
No 50
>2raq_A Conserved protein MTH889; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 3.11A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: d.58.61.1
Probab=81.30 E-value=2.3 Score=30.15 Aligned_cols=62 Identities=19% Similarity=0.276 Sum_probs=39.6
Q ss_pred CceEEEEEEeecChhhHHHHHHHHhccCCe-e-----EEEeCCCC--EEEEEee-cCHHHHHHHHhc-CCce
Q 048021 9 AKMTCGLKVDTNDPAWFSSMTKVLRKIKGA-S-----YTIDAEEG--MAYITGR-ANPRKLLRKLQS-GKYA 70 (143)
Q Consensus 9 ~~~tvvlkV~m~C~gC~~kIkkaL~kI~GV-s-----V~VDle~~--~VtV~G~-vdp~~Ll~aI~k-Gk~A 70 (143)
..+.++|.|--.-+----.+.++|.+++|| . .++|.+.. +++|+|. +|-+.|.++|++ |--+
T Consensus 5 ~irRlVLDVlKPh~p~i~d~A~~l~~~~gV~gVnItv~EvD~eTe~lkitiEG~~id~d~I~~~IE~~Gg~I 76 (97)
T 2raq_A 5 GLIRIVLDILKPHEPIIPEYAKYLSELRGVEGVNITLMEIDKETENIKVTIQGNDLDFDEITRAIESYGGSI 76 (97)
T ss_dssp SEEEEEEEEECCSCSCHHHHHHHHHHSTTCCEEEEEEEEECSSCEEEEEEEECSSCCHHHHHHHHHHTTCEE
T ss_pred CceEEEEEecCCCCCCHHHHHHHHHhCCCcceEEEEEEEeeccccEEEEEEEecCCCHHHHHHHHHHcCCeE
Confidence 345667776421222233566677777776 2 35566544 5566675 899999999999 8654
No 51
>1dtj_A RNA-binding neurooncological ventral antigen 2; KH domain, alpha-beta fold RNA-binding motif, immune system; 2.00A {Homo sapiens} SCOP: d.51.1.1 PDB: 1dt4_A
Probab=81.25 E-value=4.7 Score=25.69 Aligned_cols=53 Identities=17% Similarity=0.125 Sum_probs=35.0
Q ss_pred eEEEEEEeecChhhH----HHHHHHHhccCCeeEEEeCC--------CCEEEEEeecCHHHHHHHHh
Q 048021 11 MTCGLKVDTNDPAWF----SSMTKVLRKIKGASYTIDAE--------EGMAYITGRANPRKLLRKLQ 65 (143)
Q Consensus 11 ~tvvlkV~m~C~gC~----~kIkkaL~kI~GVsV~VDle--------~~~VtV~G~vdp~~Ll~aI~ 65 (143)
.++.|.|+-..-|+. .+.-+.|+..-|+.+.|+.+ ++.|+|.|. ++.+.+|+.
T Consensus 3 ~~~~i~Ip~~~vg~IIGkgG~~Ik~I~~~tga~I~i~~~~~~~~~~~~~~v~I~G~--~~~v~~A~~ 67 (76)
T 1dtj_A 3 ELVEMAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFLPGTRNRRVTITGS--PAATQAAQY 67 (76)
T ss_dssp EEEEEEEETTTHHHHHCSTTHHHHHHHHHHCCEEEECCTTCCSTTCCEEEEEEEES--HHHHHHHHH
T ss_pred eEEEEEEChHHcceEECCCchHHHHHHHHhCCEEEECcCCCCCCCCceeEEEEEeC--HHHHHHHHH
Confidence 356677776665665 33344467767888888864 268999986 666666654
No 52
>1j5k_A Heterogeneous nuclear ribonucleoprotein K; single-stranded DNA binding protein, transcription factor, hnRNP K, CT element, C-MYC oncogene; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1khm_A
Probab=80.57 E-value=4.6 Score=26.85 Aligned_cols=53 Identities=19% Similarity=0.273 Sum_probs=31.6
Q ss_pred CceEEEEEEeecChhhH-----HHHHHHHhccCCeeEEEeCC-----CCEEEEEeecCHHHHHHHH
Q 048021 9 AKMTCGLKVDTNDPAWF-----SSMTKVLRKIKGASYTIDAE-----EGMAYITGRANPRKLLRKL 64 (143)
Q Consensus 9 ~~~tvvlkV~m~C~gC~-----~kIkkaL~kI~GVsV~VDle-----~~~VtV~G~vdp~~Ll~aI 64 (143)
+..+++|.|+-..-|+. +.|+ .|+..-|+.+.|+.. ++.|+|.|. ++.+.+|.
T Consensus 12 ~~~~~~i~Ip~~~vg~IIGkgG~~Ik-~I~~~tga~I~I~~~~~~~~~~~v~I~G~--~e~v~~A~ 74 (89)
T 1j5k_A 12 PIITTQVTIPKDLAGSIIGKGGQRIK-QIRHESGASIKIDEPLEGSEDRIITITGT--QDQIQNAQ 74 (89)
T ss_dssp CEEEEEEEEEHHHHHHHHCGGGHHHH-HHHHHTCCEEEECSCCSSSSEEEEEEEEE--HHHHHHHH
T ss_pred CeEEEEEEEChhhcceeECCCCHhHH-HHHHHhCCeEEecCCCCCCCccEEEEEcC--HHHHHHHH
Confidence 34456666664332222 3444 466667888888763 588999997 44444443
No 53
>2hh2_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=79.65 E-value=2.5 Score=29.33 Aligned_cols=52 Identities=15% Similarity=0.223 Sum_probs=34.3
Q ss_pred EEEEEEeecChhhH-----HHHHHHHhccCCeeEEEeCCC--------CEEEEEeecCHHHHHHHHhc
Q 048021 12 TCGLKVDTNDPAWF-----SSMTKVLRKIKGASYTIDAEE--------GMAYITGRANPRKLLRKLQS 66 (143)
Q Consensus 12 tvvlkV~m~C~gC~-----~kIkkaL~kI~GVsV~VDle~--------~~VtV~G~vdp~~Ll~aI~k 66 (143)
+++|.|+-..-++. +.|++ |++.-|+.|+|+.+. +.|+|.| +++.+.+|++.
T Consensus 8 ~~~i~IP~~~vG~IIGkgG~~Ik~-I~~~TGa~I~I~~~~~~~~~~~~r~V~I~G--~~e~v~~A~~~ 72 (107)
T 2hh2_A 8 EMTFSIPTHKCGLVIGRGGENVKA-INQQTGAFVEISRQLPPNGDPNFKLFIIRG--SPQQIDHAKQL 72 (107)
T ss_dssp CEEEEEEGGGTTTTSTTTTCHHHH-HHHHSSSEEEECCCCCTTCCTTEEEEEEES--CHHHHHHHHHH
T ss_pred eEEEEECHHHcCccCCCCcHHHHH-HHHHhCCEEEEcCccCCCCCCCceEEEEEC--CHHHHHHHHHH
Confidence 67788875544444 45555 666678888887652 6888888 55555555543
No 54
>2p2r_A Poly(RC)-binding protein 2; protein-DNA complex, RNA and DNA binding protein/DNA complex; 1.60A {Homo sapiens}
Probab=79.64 E-value=3.3 Score=26.64 Aligned_cols=54 Identities=15% Similarity=0.189 Sum_probs=33.5
Q ss_pred ceEEEEEEeecChhhH----HHHHHHHhccCCeeEEEeC-----CCCEEEEEeecCHHHHHHHHh
Q 048021 10 KMTCGLKVDTNDPAWF----SSMTKVLRKIKGASYTIDA-----EEGMAYITGRANPRKLLRKLQ 65 (143)
Q Consensus 10 ~~tvvlkV~m~C~gC~----~kIkkaL~kI~GVsV~VDl-----e~~~VtV~G~vdp~~Ll~aI~ 65 (143)
..++.|.|+-..-|+. .+.-+.|+..-|+.+.|+. .++.|+|.|. ++.+.+|..
T Consensus 4 ~~~~~i~Ip~~~vg~iIGkgG~~Ik~I~~~tga~I~i~~~~~~~~~~~v~I~G~--~~~v~~A~~ 66 (76)
T 2p2r_A 4 TTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGS--AASISLAQY 66 (76)
T ss_dssp CEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECCCCTTCSEEEEEEEEC--HHHHHHHHH
T ss_pred ceEEEEEEChHHcceEECCCChHHHHHHHHHCCEEEEcCCCCCCCeEEEEEEeC--HHHHHHHHH
Confidence 4566777764443443 2333446666788888875 3688999986 666665543
No 55
>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11
Probab=78.37 E-value=9.2 Score=26.83 Aligned_cols=56 Identities=16% Similarity=0.125 Sum_probs=39.1
Q ss_pred EEEEee-cChhhHHHHHHHHhccCCeeE---EEeCCCCEEEEE-eecCHHHHHHHHhc-CCce
Q 048021 14 GLKVDT-NDPAWFSSMTKVLRKIKGASY---TIDAEEGMAYIT-GRANPRKLLRKLQS-GKYA 70 (143)
Q Consensus 14 vlkV~m-~C~gC~~kIkkaL~kI~GVsV---~VDle~~~VtV~-G~vdp~~Ll~aI~k-Gk~A 70 (143)
++.|.| ...|-..+|.++|.+ .|+++ ....++.+..+. -.-|.++.+++|.+ |+++
T Consensus 74 vv~v~~~d~pGvla~i~~~L~~-~~InI~~~~~~~~~~~~~~~i~~~d~~~A~~~L~~~g~~v 135 (144)
T 2f06_A 74 VVGISCPNVPGALAKVLGFLSA-EGVFIEYMYSFANNNVANVVIRPSNMDKCIEVLKEKKVDL 135 (144)
T ss_dssp EEEEEEESSTTHHHHHHHHHHH-TTCCEEEEEEEEETTEEEEEEEESCHHHHHHHHHHTTCEE
T ss_pred EEEEEeCCCCcHHHHHHHHHHH-CCCCEEEEEEEccCCcEEEEEEeCCHHHHHHHHHHcCCEE
Confidence 455666 679999999999987 67743 222133444433 34599999999999 9977
No 56
>2opv_A KHSRP protein; KH domain, RNA binding protein, KSRP; NMR {Homo sapiens}
Probab=76.86 E-value=12 Score=24.49 Aligned_cols=54 Identities=13% Similarity=0.187 Sum_probs=33.2
Q ss_pred ceEEEEEEeecChhhH----HHHHHHHhccCCeeEEEeCCCC-------EEEEEeecCHHHHHHHHh
Q 048021 10 KMTCGLKVDTNDPAWF----SSMTKVLRKIKGASYTIDAEEG-------MAYITGRANPRKLLRKLQ 65 (143)
Q Consensus 10 ~~tvvlkV~m~C~gC~----~kIkkaL~kI~GVsV~VDle~~-------~VtV~G~vdp~~Ll~aI~ 65 (143)
..+.+|.|+-..-|+. .+.-+.|+..-|+.+.|+-+.. .|+|.| +++.+.+|.+
T Consensus 13 ~~~~~i~Ip~~~ig~IIGkgG~~Ik~I~~~tga~I~i~~~~~~~~~~er~v~I~G--~~~~v~~A~~ 77 (85)
T 2opv_A 13 GTVQEIMIPAGKAGLVIGKGGETIKQLQERAGVKMILIQDGSQNTNVDKPLRIIG--DPYKVQQACE 77 (85)
T ss_dssp SEEEEEEECTTTHHHHHTTTTHHHHHHHHHHTCEEEECSSSCSSTTSCEEEEEEE--CHHHHHHHHH
T ss_pred CEEEEEEeChhheeeeECCCCHHHHHHHHHHCCEEEEcCCCCCCCCCceEEEEEe--CHHHHHHHHH
Confidence 3456777765443333 2333446666788888876432 299998 7777776654
No 57
>1x4n_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1 PDB: 2opu_A
Probab=76.75 E-value=13 Score=24.75 Aligned_cols=51 Identities=18% Similarity=0.321 Sum_probs=32.2
Q ss_pred ceEEEEEEeecChhhH-----HHHHHHHhccCCeeEEEeCCC-----CEEEEEeecCHHHHHHH
Q 048021 10 KMTCGLKVDTNDPAWF-----SSMTKVLRKIKGASYTIDAEE-----GMAYITGRANPRKLLRK 63 (143)
Q Consensus 10 ~~tvvlkV~m~C~gC~-----~kIkkaL~kI~GVsV~VDle~-----~~VtV~G~vdp~~Ll~a 63 (143)
..+.+|.|+-..-|+. +.|++ |++.-|+.|.|+.+. +.|+|.|. ++.+.+|
T Consensus 14 ~~~~~i~Ip~~~vG~IIGkgG~~Ik~-I~~~tga~I~I~~~~~g~~~r~v~I~G~--~e~v~~A 74 (92)
T 1x4n_A 14 VMTEEYKVPDGMVGFIIGRGGEQISR-IQQESGCKIQIAPDSGGLPERSCMLTGT--PESVQSA 74 (92)
T ss_dssp CEEEEEEEEHHHHHHHHCSSSHHHHH-HHHHSCCEEEECSCCTTCSEEEEEEEEC--HHHHHHH
T ss_pred CEEEEEEEChHHcceeECCCchHHHH-HHHHhCCEEEEcCCCCCCCccEEEEEeC--HHHHHHH
Confidence 3467777775544444 34444 666678888887652 48999986 4444444
No 58
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=75.60 E-value=7.2 Score=25.52 Aligned_cols=73 Identities=15% Similarity=0.146 Sum_probs=42.2
Q ss_pred CCCCCCceEEEEEE-eecChhhHHHHHHHHhccCCe-eEEEeCCCCEEEEE--eecCHHHHHHHHhc----CCceEEeec
Q 048021 4 SSSSSAKMTCGLKV-DTNDPAWFSSMTKVLRKIKGA-SYTIDAEEGMAYIT--GRANPRKLLRKLQS----GKYANLCWV 75 (143)
Q Consensus 4 ss~~s~~~tvvlkV-~m~C~gC~~kIkkaL~kI~GV-sV~VDle~~~VtV~--G~vdp~~Ll~aI~k----Gk~Ael~~~ 75 (143)
|+++......+|-| ++.-.--...|++.+.+.-.| +|.+-. +-..|+ ...++++.+++|.. |+...+...
T Consensus 3 ~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~~--~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 80 (103)
T 2dgu_A 3 SGSSGMAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLK--DYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFA 80 (103)
T ss_dssp CCCCCCCCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEECS--SCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEC--CEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEc
Confidence 33333333445555 566667788899999988777 566653 344443 33344445554443 666666665
Q ss_pred CCC
Q 048021 76 SAG 78 (143)
Q Consensus 76 ~~~ 78 (143)
.+.
T Consensus 81 ~~~ 83 (103)
T 2dgu_A 81 KPP 83 (103)
T ss_dssp CCC
T ss_pred CCC
Confidence 443
No 59
>2ct6_A SH3 domain-binding glutamic acid-rich-like protein 2; SH3BGRL2,FASH3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=74.38 E-value=6.1 Score=26.90 Aligned_cols=36 Identities=8% Similarity=0.047 Sum_probs=25.8
Q ss_pred ceEEEEEEeecChhhHH-----HHHHHHhccCCee-EEEeCCC
Q 048021 10 KMTCGLKVDTNDPAWFS-----SMTKVLRKIKGAS-YTIDAEE 46 (143)
Q Consensus 10 ~~tvvlkV~m~C~gC~~-----kIkkaL~kI~GVs-V~VDle~ 46 (143)
.+.++|=.--.|.-|.. ++++.|.. .||. .++|+..
T Consensus 7 ~m~V~vy~~~~C~~C~~~~~~~~ak~~L~~-~gi~y~~vdI~~ 48 (111)
T 2ct6_A 7 GMVIRVFIASSSGFVAIKKKQQDVVRFLEA-NKIEFEEVDITM 48 (111)
T ss_dssp CCCEEEEECSSCSCHHHHHHHHHHHHHHHH-TTCCEEEEETTT
T ss_pred ccEEEEEEcCCCCCcccchhHHHHHHHHHH-cCCCEEEEECCC
Confidence 45566555568999996 89998887 4784 5666654
No 60
>2hh3_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=74.05 E-value=6.7 Score=27.31 Aligned_cols=53 Identities=15% Similarity=0.238 Sum_probs=33.2
Q ss_pred ceEEEEEEeecChhhH-----HHHHHHHhccCCeeEEEeCCCC-----EEEEEeecCHHHHHHHHh
Q 048021 10 KMTCGLKVDTNDPAWF-----SSMTKVLRKIKGASYTIDAEEG-----MAYITGRANPRKLLRKLQ 65 (143)
Q Consensus 10 ~~tvvlkV~m~C~gC~-----~kIkkaL~kI~GVsV~VDle~~-----~VtV~G~vdp~~Ll~aI~ 65 (143)
..+++|.|+-..-++. +.|++ |++.-|+.|+|+.+.. .|+|.|. ++.+.+|++
T Consensus 10 ~~~~~i~Ip~~~iG~IIGkgG~~Ik~-I~~~TGakI~I~~~~~~~~er~V~I~G~--~e~v~~A~~ 72 (106)
T 2hh3_A 10 GGGIDVPVPRHSVGVVIGRSGEMIKK-IQNDAGVRIQFKQDDGTGPEKIAHIMGP--PDRCEHAAR 72 (106)
T ss_dssp --CEEEEEETTTHHHHHTTTTHHHHH-HHHHHTCEEEECSSCSSSSEEEEEEESS--HHHHHHHHH
T ss_pred CeEEEEEECHHHcCccCCCCcHHHHH-HHHHHCcEEEEecCCCCCceeEEEEEeC--HHHHHHHHH
Confidence 4577888876666665 45555 5555788888875542 6899986 455444443
No 61
>1zzk_A Heterogeneous nuclear ribonucleoprotein K; KH domian, alpha-beta fold, DNA binding protein; 0.95A {Homo sapiens} SCOP: d.51.1.1 PDB: 1zzj_A 1zzi_A
Probab=73.33 E-value=10 Score=24.69 Aligned_cols=53 Identities=19% Similarity=0.291 Sum_probs=32.6
Q ss_pred CceEEEEEEeecChhhH-----HHHHHHHhccCCeeEEEeCC-----CCEEEEEeecCHHHHHHHH
Q 048021 9 AKMTCGLKVDTNDPAWF-----SSMTKVLRKIKGASYTIDAE-----EGMAYITGRANPRKLLRKL 64 (143)
Q Consensus 9 ~~~tvvlkV~m~C~gC~-----~kIkkaL~kI~GVsV~VDle-----~~~VtV~G~vdp~~Ll~aI 64 (143)
+..+++|.|+-..-|+. +.|++ |+..-|+.+.|+.. ++.|+|.|. ++.+.+|.
T Consensus 5 ~~~~~~i~Vp~~~vg~iIGkgG~~Ik~-I~~~tga~I~i~~~~~~~~~~~v~I~G~--~~~v~~A~ 67 (82)
T 1zzk_A 5 PIITTQVTIPKDLAGSIIGKGGQRIKQ-IRHESGASIKIDEPLEGSEDRIITITGT--QDQIQNAQ 67 (82)
T ss_dssp CCEEEEEEEETTTGGGGTCGGGHHHHH-HHHHHCCEEEECCTTSCSSEEEEEEEEC--HHHHHHHH
T ss_pred CeEEEEEEEChHhcCeeECCCchHHHH-HHHHHCCEEEEcCCCCCCCceEEEEEeC--HHHHHHHH
Confidence 45667788875443333 34444 56667887778653 258999995 55555544
No 62
>2nyt_A Probable C->U-editing enzyme apobec-2; cytidine deaminase, zinc-ION binding, hydrolase; 2.50A {Homo sapiens} PDB: 2rpz_A
Probab=73.29 E-value=6.8 Score=30.25 Aligned_cols=59 Identities=19% Similarity=0.103 Sum_probs=40.0
Q ss_pred EEEEEEee-cChhhHHHHHHHHhccCCe-eEEEeCCCCEEEEEeecCH--HHHHHHHhc-CCceEEeec
Q 048021 12 TCGLKVDT-NDPAWFSSMTKVLRKIKGA-SYTIDAEEGMAYITGRANP--RKLLRKLQS-GKYANLCWV 75 (143)
Q Consensus 12 tvvlkV~m-~C~gC~~kIkkaL~kI~GV-sV~VDle~~~VtV~G~vdp--~~Ll~aI~k-Gk~Ael~~~ 75 (143)
.+++=|.+ -|..|+++|-.+|.+-+|| .|-+-...- ..-+| ..-++.|++ |-+++++..
T Consensus 84 g~TlYvTlePC~~Ca~aIi~al~~~~gI~rVV~~~~d~-----~~~~p~~~~g~~~L~~aGI~V~~~~~ 147 (190)
T 2nyt_A 84 NVTWYVSSSPCAACADRIIKTLSKTKNLRLLILVGRLF-----MWEEPEIQAALKKLKEAGCKLRIMKP 147 (190)
T ss_pred CeEEEEEcChHHHHHHHHHHhhhhcCCccEEEEEeecC-----CcCChHHHHHHHHHHHCCCEEEEecH
Confidence 67888887 6999999999999999998 333311100 00022 366778888 998886543
No 63
>1we8_A Tudor and KH domain containing protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.51.1.1
Probab=73.24 E-value=5.3 Score=27.39 Aligned_cols=46 Identities=20% Similarity=0.222 Sum_probs=30.3
Q ss_pred CceEEEEEEeecChhhH-----HHHHHHHhccCCeeEEEeC-------CCCEEEEEeec
Q 048021 9 AKMTCGLKVDTNDPAWF-----SSMTKVLRKIKGASYTIDA-------EEGMAYITGRA 55 (143)
Q Consensus 9 ~~~tvvlkV~m~C~gC~-----~kIkkaL~kI~GVsV~VDl-------e~~~VtV~G~v 55 (143)
.+.+.+|.|+-..-|+. +.|++ |++.-|+.|.|+. .++.|+|.|..
T Consensus 13 ap~~~~i~Ip~~~ig~IIGkgG~~Ik~-I~~~tga~I~I~~~~~~~~~~~~~V~I~G~~ 70 (104)
T 1we8_A 13 TPVFEQLSVPQRSVGRIIGRGGETIRS-ICKASGAKITCDKESEGTLLLSRLIKISGTQ 70 (104)
T ss_dssp CEEEEEEEEETTTHHHHHTTTSHHHHH-HHHHHCCEEEECCSSCCSSSSEEEEEEEEEH
T ss_pred CCEEEEEEEChhheeeeECCCCHHHHH-HHHHHCCEEEEecCCCCCCCCcceEEEEcCH
Confidence 34466777775554444 34444 5666788888876 36789999864
No 64
>2e3u_A PH-DIM2P, hypothetical protein PH1566; PRE-ribosomal RNA processing factor, RNA binding protein; 2.30A {Pyrococcus horikoshii} PDB: 3aev_B
Probab=71.81 E-value=4.6 Score=31.79 Aligned_cols=58 Identities=21% Similarity=0.185 Sum_probs=38.4
Q ss_pred CCceEEEEEEeec----ChhhHHHHHHHHhccCCeeEEEeCCCCEEEEEee---cCHHHHHHHHh
Q 048021 8 SAKMTCGLKVDTN----DPAWFSSMTKVLRKIKGASYTIDAEEGMAYITGR---ANPRKLLRKLQ 65 (143)
Q Consensus 8 s~~~tvvlkV~m~----C~gC~~kIkkaL~kI~GVsV~VDle~~~VtV~G~---vdp~~Ll~aI~ 65 (143)
..+.+..++|+-. =-|...++.+.|..--|+.+++|.++++|+|.+. .|++.+.+|..
T Consensus 31 ~aP~i~~i~IP~~kig~lIG~gGk~Ik~I~e~tgvkI~I~~~~g~V~I~~~~~t~d~~~i~kA~~ 95 (219)
T 2e3u_A 31 FFKQEEYVKIPKDRIAVLIGKKGQTKKEIEKRTKTKITIDSETGEVWITSTKETEDPLAVWKARD 95 (219)
T ss_dssp --CCEEEEECCHHHHHHHHCGGGHHHHHHHHHHTEEEEECTTTCEEEEEECTTCCSHHHHHHHHH
T ss_pred CCCEEEEEEeCHHHhhhhhcccHHHHHHHHHHHCcEEEEEcCCCEEEEecCCCCCCHHHHHHHHH
Confidence 4455667777632 2344456666676667899999999999999984 25666655543
No 65
>1wvn_A Poly(RC)-binding protein 1; KH domain, RNA binding domain, RNA binding protein; 2.10A {Homo sapiens} SCOP: d.51.1.1
Probab=70.14 E-value=10 Score=24.55 Aligned_cols=53 Identities=21% Similarity=0.273 Sum_probs=33.6
Q ss_pred CceEEEEEEeecChhhH-----HHHHHHHhccCCeeEEEeCC-----CCEEEEEeecCHHHHHHHH
Q 048021 9 AKMTCGLKVDTNDPAWF-----SSMTKVLRKIKGASYTIDAE-----EGMAYITGRANPRKLLRKL 64 (143)
Q Consensus 9 ~~~tvvlkV~m~C~gC~-----~kIkkaL~kI~GVsV~VDle-----~~~VtV~G~vdp~~Ll~aI 64 (143)
...+++|.|+-..-|+. +.|++ |+..-|+.+.|+.. ++.|+|.|.. +.+.+|+
T Consensus 4 ~~~~~~i~Ip~~~vg~IIGkgG~~Ik~-I~~~sga~I~i~~~~~~~~~r~v~I~G~~--~~v~~A~ 66 (82)
T 1wvn_A 4 SQTTHELTIPNNLIGCIIGRQGANINE-IRQMSGAQIKIANPVEGSSGRQVTITGSA--ASISLAQ 66 (82)
T ss_dssp TCEEEEEEEEGGGHHHHHCGGGHHHHH-HHHHHCCEEEECCCCTTCSEEEEEEEECH--HHHHHHH
T ss_pred CcEEEEEEEchHhccceeCCCchhHHH-HHHHhCCEEEEecCCCCCCceEEEEEcCH--HHHHHHH
Confidence 34567788876555554 34444 66667888888753 5689999853 4444443
No 66
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=69.61 E-value=16 Score=23.12 Aligned_cols=71 Identities=17% Similarity=0.227 Sum_probs=41.5
Q ss_pred CCCCCceEEEEEE-eecChhhHHHHHHHHhccCCe-eEEEeCCCCEEEEE--eecCHHHHHHHHhc----CCceEEeecC
Q 048021 5 SSSSAKMTCGLKV-DTNDPAWFSSMTKVLRKIKGA-SYTIDAEEGMAYIT--GRANPRKLLRKLQS----GKYANLCWVS 76 (143)
Q Consensus 5 s~~s~~~tvvlkV-~m~C~gC~~kIkkaL~kI~GV-sV~VDle~~~VtV~--G~vdp~~Ll~aI~k----Gk~Ael~~~~ 76 (143)
|+.......+|-| ++...--...|++.+.+.-.| ++.+-.. -..|+ ...++++.++.+.. |+...+-...
T Consensus 3 ~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~~--~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 80 (92)
T 2dgt_A 3 SGSSGKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKD--YAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLST 80 (92)
T ss_dssp CSCCCCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECSS--EEEEEESCHHHHHHHHHHHTTEEETTEEEEEEESS
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEECC--EEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEcc
Confidence 4444444555656 577777889999999987667 6766533 44443 22334444444433 6666555554
Q ss_pred C
Q 048021 77 A 77 (143)
Q Consensus 77 ~ 77 (143)
+
T Consensus 81 ~ 81 (92)
T 2dgt_A 81 S 81 (92)
T ss_dssp C
T ss_pred C
Confidence 3
No 67
>2cuy_A Malonyl COA-[acyl carrier protein] transacylase; transferase, structural genomics, NPPSFA; 2.10A {Thermus thermophilus}
Probab=68.45 E-value=10 Score=30.43 Aligned_cols=52 Identities=17% Similarity=0.196 Sum_probs=41.7
Q ss_pred HHHHHHHHhccCCeeEEEeCCCCEEEEEeec-CHHHHHHHHhc-CCceEEeecC
Q 048021 25 FSSMTKVLRKIKGASYTIDAEEGMAYITGRA-NPRKLLRKLQS-GKYANLCWVS 76 (143)
Q Consensus 25 ~~kIkkaL~kI~GVsV~VDle~~~VtV~G~v-dp~~Ll~aI~k-Gk~Ael~~~~ 76 (143)
...|++.|...+||.+......+.++|.|.. .-+++.+.+++ |.++..+.+.
T Consensus 137 ~~~v~~~l~~~~~v~iA~~Nsp~~~visG~~~~l~~~~~~l~~~g~~~~~L~v~ 190 (305)
T 2cuy_A 137 LEEIQKALEGLEGVEIANLNAPEQTVISGRRQAVEEAAERLKERRARVVFLPVS 190 (305)
T ss_dssp HHHHHHHHTTCSSEEEEEEEETTEEEEEEEHHHHHHHHHHHHHTTCEEEECSCS
T ss_pred HHHHHHHHhhcCCeEEEEEecCCcEEEEcCHHHHHHHHHHHHhCCceEEECCCC
Confidence 5678888888878877666677899999975 56788888888 9888877764
No 68
>2w7v_A General secretion pathway protein L; transport, type II secretion, transport protein; 2.30A {Vibrio parahaemolyticus}
Probab=68.37 E-value=10 Score=26.36 Aligned_cols=51 Identities=18% Similarity=0.210 Sum_probs=40.1
Q ss_pred HHHHHHHhccCCe---eEEEeCCCCEEEEEeec----CHHHHHHHHhcCCceEEeecC
Q 048021 26 SSMTKVLRKIKGA---SYTIDAEEGMAYITGRA----NPRKLLRKLQSGKYANLCWVS 76 (143)
Q Consensus 26 ~kIkkaL~kI~GV---sV~VDle~~~VtV~G~v----dp~~Ll~aI~kGk~Ael~~~~ 76 (143)
..+..+|..+++| ++..|...+++.|.-.. +-+++...|.+|+.|++=+..
T Consensus 15 ~~L~~~l~~vp~l~~~sLryD~~R~ELrlq~~A~dF~~~E~lr~~l~~gf~Ve~Gs~~ 72 (95)
T 2w7v_A 15 AALPATLGQVKDLEITSFKYDGQRGEVRIHARSSDFQPFEQARVKLAEKFNVEQGQLN 72 (95)
T ss_dssp GGHHHHHHTSTTCEEEEEEEETTTTEEEEEEEESSSHHHHHHHHHHHTTEEEEECCCE
T ss_pred HHHHHHhccCCCceEEEEeecCCCCeEEEEEecCCHHHHHHHHHHhhcCcEEehhhhc
Confidence 3566788888998 48999999999998653 467888888669999976664
No 69
>1tua_A Hypothetical protein APE0754; structural genomics, protein structure initiative, MCSG, four layers alpha-beta sandwich, PSI; 1.50A {Aeropyrum pernix} SCOP: d.51.1.1 d.51.1.1
Probab=67.23 E-value=5.7 Score=30.78 Aligned_cols=57 Identities=18% Similarity=0.258 Sum_probs=38.7
Q ss_pred EEEEeecChhhH----HHHHHHHhccCCeeEEEeCCCCEEEEEee---cCHHHHHHH------HhcCCce
Q 048021 14 GLKVDTNDPAWF----SSMTKVLRKIKGASYTIDAEEGMAYITGR---ANPRKLLRK------LQSGKYA 70 (143)
Q Consensus 14 vlkV~m~C~gC~----~kIkkaL~kI~GVsV~VDle~~~VtV~G~---vdp~~Ll~a------I~kGk~A 70 (143)
.+.|+-+.-|.. ..+.+.|...-|+.+++|.+++.|+|... .||..+.+| |..|+.+
T Consensus 7 ~i~VP~~rvg~liGk~g~~~k~i~e~~g~~i~id~~~~~V~i~t~~~t~dp~~i~KA~dlI~ai~rgf~~ 76 (191)
T 1tua_A 7 YVKVKPERLGAVIGPRGEVKAEIMRRTGTVITVDTENSMVIVEPEAEGIPPVNLMKAAEVVKAISLGFPP 76 (191)
T ss_dssp EEECCGGGHHHHHCGGGHHHHHHHHHHTEEEEEETTTTEEEEEESSTTSCHHHHHHHHHHHHHHHHTCCH
T ss_pred EEECCHHHhhHHHhcCHhHHHHHHHHHCcEEEEEcCCCeEEEEeCCCCCCHHHHHHHHHHHHHHHcCCCH
Confidence 445554444443 67788888877999999999999999843 465555443 3337664
No 70
>2ctf_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=66.58 E-value=11 Score=25.92 Aligned_cols=29 Identities=10% Similarity=0.239 Sum_probs=23.1
Q ss_pred HHHHHHHhccCCeeEEEeCCCCEEEEEee
Q 048021 26 SSMTKVLRKIKGASYTIDAEEGMAYITGR 54 (143)
Q Consensus 26 ~kIkkaL~kI~GVsV~VDle~~~VtV~G~ 54 (143)
..|++...+..+|.|.+.-+++.|+|+|.
T Consensus 47 ~~Ik~i~~~~~~v~I~fp~~~~~ItI~G~ 75 (102)
T 2ctf_A 47 QNLAKITQQMPKVHIEFTEGEDKITLEGP 75 (102)
T ss_dssp CHHHHHHHHCSSSEEEECSSSCEEEEEEC
T ss_pred ccHHHHHHHcCCcEEEeCCCCCEEEEECC
Confidence 35677666667888888878899999997
No 71
>1x4m_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1
Probab=65.47 E-value=7.1 Score=26.21 Aligned_cols=44 Identities=14% Similarity=0.183 Sum_probs=24.6
Q ss_pred eEEEEEEeecChhhH----HHHHHHHhccCCeeEEEeCC-------CCEEEEEee
Q 048021 11 MTCGLKVDTNDPAWF----SSMTKVLRKIKGASYTIDAE-------EGMAYITGR 54 (143)
Q Consensus 11 ~tvvlkV~m~C~gC~----~kIkkaL~kI~GVsV~VDle-------~~~VtV~G~ 54 (143)
.+.+|.|+-..-|+. .+.-|.|++.-|+.+.|+.+ +..|+|.|.
T Consensus 15 ~~~~i~Ip~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~~~~~r~v~I~G~ 69 (94)
T 1x4m_A 15 AVQEIMIPASKAGLVIGKGGETIKQLQERAGVKMVMIQDGPQNTGADKPLRITGD 69 (94)
T ss_dssp EEEEEEECHHHHHHHSCSSSSHHHHHHHHHTSEEEECCSCCCSSCSCEEEEEEEC
T ss_pred EEEEEEEChhhcceEECCCCHHHHHHHHHHCCeEEecCCCCCCCCCceEEEEEeC
Confidence 345566654433333 12233355556887888754 345999984
No 72
>2jzx_A Poly(RC)-binding protein 2; PCBP2, KH domains, RNA binding, DNA-binding, nucleus, phosph ribonucleoprotein, RNA-binding, RNA binding protein; NMR {Homo sapiens}
Probab=64.58 E-value=9.3 Score=27.36 Aligned_cols=55 Identities=20% Similarity=0.282 Sum_probs=33.4
Q ss_pred CceEEEEEEeecChhhH----HHHHHHHhccCCeeEEEeC------CCCEEEEEeecCHHHHHHHHh
Q 048021 9 AKMTCGLKVDTNDPAWF----SSMTKVLRKIKGASYTIDA------EEGMAYITGRANPRKLLRKLQ 65 (143)
Q Consensus 9 ~~~tvvlkV~m~C~gC~----~kIkkaL~kI~GVsV~VDl------e~~~VtV~G~vdp~~Ll~aI~ 65 (143)
++.++.|.|+-..-||. .+.-+.|+..-|+.+.|+. .++.|+|.| +++.+.+|++
T Consensus 87 ~~~~~~i~vp~~~~g~iIGkgG~~Ik~i~~~tga~I~i~~~~~~~~~~~~v~I~G--~~~~v~~A~~ 151 (160)
T 2jzx_A 87 PPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITIAG--IPQSIIECVK 151 (160)
T ss_dssp CSEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHSSEECCCCCCSTTCCEEEEEEEE--CHHHHHHHHH
T ss_pred CCEEEEEEEChhheeeEECCCCHHHHHHHHHhCCeEEECCCCCCCCCceEEEEEc--CHHHHHHHHH
Confidence 45677777764333332 2223345666777777764 358899999 5666666654
No 73
>2kgs_A Uncharacterized protein RV0899/MT0922; outer membrane protein A, BON DO cell membrane, membrane, transmembrane, membrane protein; NMR {Mycobacterium tuberculosis} PDB: 2ksm_A
Probab=63.34 E-value=3.2 Score=29.92 Aligned_cols=35 Identities=17% Similarity=0.240 Sum_probs=23.6
Q ss_pred hhHHHHHHHHhccCCe-eEEEeCCCCEEEEEeecCHH
Q 048021 23 AWFSSMTKVLRKIKGA-SYTIDAEEGMAYITGRANPR 58 (143)
Q Consensus 23 gC~~kIkkaL~kI~GV-sV~VDle~~~VtV~G~vdp~ 58 (143)
+...+ ..+|+.+..+ .++|..+++.|+++|.++..
T Consensus 62 ~~~a~-~~aL~~~~~l~~i~V~V~~g~VtLsG~v~s~ 97 (132)
T 2kgs_A 62 DFSSA-EPVFTASVPIPDFGLKVERDTVTLTGTAPSS 97 (132)
T ss_dssp CGGGC-HHHHHHHTTCTTCEEEEEETEEEEECEESSH
T ss_pred cHHHH-HHHHHhcCcCCceEEEEECCEEEEEEEECCH
Confidence 34444 5566664444 46777789999999998644
No 74
>3gkx_A Putative ARSC family related protein; ARSC family protein, structural genomi 2, protein structure initiative; 2.20A {Bacteroides fragilis} SCOP: c.47.1.0
Probab=63.14 E-value=8.6 Score=26.94 Aligned_cols=52 Identities=10% Similarity=-0.089 Sum_probs=35.2
Q ss_pred eEEEEEEeecChhhHHHHHHHHhccCCee-EEEeCCCCEEEEEeecCHHHHHHHHhc-CCce
Q 048021 11 MTCGLKVDTNDPAWFSSMTKVLRKIKGAS-YTIDAEEGMAYITGRANPRKLLRKLQS-GKYA 70 (143)
Q Consensus 11 ~tvvlkV~m~C~gC~~kIkkaL~kI~GVs-V~VDle~~~VtV~G~vdp~~Ll~aI~k-Gk~A 70 (143)
|.++|=-.-.|..|. ++++.|.+ .||. -.+|..+. ..+.++|.+.+++ |..+
T Consensus 4 M~i~iY~~p~C~~c~-ka~~~L~~-~gi~~~~~di~~~------~~~~~eL~~~l~~~g~~~ 57 (120)
T 3gkx_A 4 MKTLFLQYPACSTCQ-KAKKWLIE-NNIEYTNRLIVDD------NPTVEELKAWIPLSGLPV 57 (120)
T ss_dssp CCCEEEECTTCHHHH-HHHHHHHH-TTCCCEEEETTTT------CCCHHHHHHHHHHHTSCG
T ss_pred cEEEEEECCCChHHH-HHHHHHHH-cCCceEEEecccC------cCCHHHHHHHHHHcCCCH
Confidence 444444455899998 45566665 6885 45666653 3678899999998 8654
No 75
>1ec6_A RNA-binding protein NOVA-2; KH domain, alpha-beta fold, RNA-binding motif, protein/RNA structure, RNA binding protein/RNA complex; 2.40A {Homo sapiens} SCOP: d.51.1.1
Probab=62.93 E-value=11 Score=24.68 Aligned_cols=50 Identities=18% Similarity=0.207 Sum_probs=30.7
Q ss_pred EEEEEEeecChhhH-----HHHHHHHhccCCeeEEEeCC--------CCEEEEEeecCHHHHHHHH
Q 048021 12 TCGLKVDTNDPAWF-----SSMTKVLRKIKGASYTIDAE--------EGMAYITGRANPRKLLRKL 64 (143)
Q Consensus 12 tvvlkV~m~C~gC~-----~kIkkaL~kI~GVsV~VDle--------~~~VtV~G~vdp~~Ll~aI 64 (143)
++.|.|+-..-|+. +.|+ .|+..-|+.+.|+.+ ++.|+|.|. ++.+.+|.
T Consensus 4 t~~i~IP~~~vG~IIGkgG~~Ik-~I~~~tga~I~I~~~~~~~~g~~~r~v~I~G~--~~~v~~A~ 66 (87)
T 1ec6_A 4 LVEIAVPENLVGAILGKGGKTLV-EYQELTGARIQISKKGEFLPGTRNRRVTITGS--PAATQAAQ 66 (87)
T ss_dssp EEEEEEEHHHHHHHHCGGGHHHH-HHHHHHCCEEEECCTTCBSTTSCEEEEEEESS--HHHHHHHH
T ss_pred EEEEEEChHHcCeeECCCcHhHH-HHHHHhCCEEEEccCCCCCCCCCceEEEEEcC--HHHHHHHH
Confidence 55677764443333 3444 466667888888764 258999986 55555444
No 76
>2axy_A Poly(RC)-binding protein 2; protein-DNA complex, DNA binding protein-DNA complex; 1.70A {Homo sapiens} SCOP: d.51.1.1 PDB: 2pqu_A 2py9_A 1ztg_A 3vke_A*
Probab=60.68 E-value=28 Score=22.07 Aligned_cols=54 Identities=17% Similarity=0.269 Sum_probs=32.0
Q ss_pred CceEEEEEEeecChhh-----HHHHHHHHhccCCeeEEEeCCC---CEEEEEeecCHHHHHHHHh
Q 048021 9 AKMTCGLKVDTNDPAW-----FSSMTKVLRKIKGASYTIDAEE---GMAYITGRANPRKLLRKLQ 65 (143)
Q Consensus 9 ~~~tvvlkV~m~C~gC-----~~kIkkaL~kI~GVsV~VDle~---~~VtV~G~vdp~~Ll~aI~ 65 (143)
...++.|.|+-..-|+ -..|++ |+.--|+.+.|+.+. ..|+|.|. ++.+.+|++
T Consensus 3 ~~~~~~i~ip~~~ig~iIGkgG~~Ik~-I~~~tga~I~i~~~~~~er~v~I~G~--~~~v~~A~~ 64 (73)
T 2axy_A 3 VTLTIRLLMHGKEVGSIIGKKGESVKK-MREESGARINISEGNCPERIITLAGP--TNAIFKAFA 64 (73)
T ss_dssp CCEEEEEEEEHHHHHHHHCGGGHHHHH-HHHHHCCEEEECSSCCSEEEEEEEEC--HHHHHHHHH
T ss_pred ceEEEEEEEChhHeeeEECCCCHHHHH-HHHHHCCEEEEecCCCCcEEEEEEeC--HHHHHHHHH
Confidence 3445666665433222 245555 555568888887653 36888987 666666654
No 77
>1v95_A Nuclear receptor coactivator 5; coactivator independent of AF-2 function (CIA), structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: c.51.1.1
Probab=60.58 E-value=7.7 Score=28.43 Aligned_cols=42 Identities=19% Similarity=0.171 Sum_probs=35.0
Q ss_pred CCCCCCCceEEEEEEeecChhhHHHHHHHHhccCCeeEEEeCC
Q 048021 3 SSSSSSAKMTCGLKVDTNDPAWFSSMTKVLRKIKGASYTIDAE 45 (143)
Q Consensus 3 ~ss~~s~~~tvvlkV~m~C~gC~~kIkkaL~kI~GVsV~VDle 45 (143)
|||..-|.+..+|-|+-.-..-++.|.+.|++. |+.|++|..
T Consensus 2 ~~~~~~P~Qv~IlpVs~~~~~YA~~V~~~L~~~-GiRvevD~~ 43 (130)
T 1v95_A 2 SSGSSGPVDCSVIVVNKQTKDYAESVGRKVRDL-GMVVDLIFL 43 (130)
T ss_dssp CCCCCCCCTEEEEESSSGGGHHHHHHHHHHHTT-TCCEEEEEC
T ss_pred CCCCCCCCeEEEEEeCcchHHHHHHHHHHHHHC-CCEEEEecC
Confidence 677777888888888878889999999999884 888888774
No 78
>3tzy_A Polyketide synthase PKS13; acyltransferase, long fatty acid chain transferase, acyl CAR protein, transferase; HET: PLM; 2.20A {Mycobacterium tuberculosis} PDB: 3tzw_A 3tzx_A* 3tzz_A*
Probab=60.51 E-value=16 Score=31.68 Aligned_cols=55 Identities=15% Similarity=0.193 Sum_probs=43.4
Q ss_pred hHHHHHHHHhccCCeeEEEeCCCCEEEEEeec-CHHHHHHHHhc-CCceEEeecCCC
Q 048021 24 WFSSMTKVLRKIKGASYTIDAEEGMAYITGRA-NPRKLLRKLQS-GKYANLCWVSAG 78 (143)
Q Consensus 24 C~~kIkkaL~kI~GVsV~VDle~~~VtV~G~v-dp~~Ll~aI~k-Gk~Ael~~~~~~ 78 (143)
-...|++.+...++|.|......+.++|.|.. .-++|++.+++ |..+..+.+...
T Consensus 280 ~~~~v~~~~~~~~~v~iA~~NsP~~~ViSG~~~ai~~~~~~l~~~g~~~~~L~V~~A 336 (491)
T 3tzy_A 280 SADEIREVFSDFPDLEVCVYAAPTQTVIGGPPEQVDAILARAEAEGKFARKFATKGA 336 (491)
T ss_dssp CHHHHHHHGGGCTTCEEEEEEETTEEEEEECHHHHHHHHHHHHHHTCCEEEESCSSC
T ss_pred hHHHHHhhhcccccceeeeecCCCcEEeCCcHHHHHHHHHHHHhcCceEEecccccC
Confidence 35677788888788887666677899999975 57788888888 999998888543
No 79
>2z51_A NIFU-like protein 2, chloroplast; CNFU, iron-sulfur cluster biosynthesis, metal transport; 1.35A {Arabidopsis thaliana} PDB: 2jnv_A
Probab=59.76 E-value=18 Score=26.98 Aligned_cols=63 Identities=14% Similarity=0.116 Sum_probs=34.4
Q ss_pred EEEEEEeecChhhHH-------HHHHHHh-ccCCe-eEEEeCCCCEEEEEeecCHHHHHHHHh--------c-CCceEEe
Q 048021 12 TCGLKVDTNDPAWFS-------SMTKVLR-KIKGA-SYTIDAEEGMAYITGRANPRKLLRKLQ--------S-GKYANLC 73 (143)
Q Consensus 12 tvvlkV~m~C~gC~~-------kIkkaL~-kI~GV-sV~VDle~~~VtV~G~vdp~~Ll~aI~--------k-Gk~Ael~ 73 (143)
++.++..+.|.||.. .|++.|+ .++.+ .|..-.+... .+ ....++|.++|+ . |=++||+
T Consensus 36 ~V~v~l~GaC~gC~ss~~Tlk~~Ie~~L~~~vpev~~V~~v~~~~e-~l--~L~~~~v~~~L~~iRP~L~~~dGGdvelv 112 (154)
T 2z51_A 36 VVRVKLQGACGSCPSSTMTMKMGIERRLMEKIPEIVAVEALPDEET-GL--ELNEENIEKVLEEIRPYLIGTADGSLDLV 112 (154)
T ss_dssp EEEEEEEHHHHTCHHHHHHHHHHHHHHHHHHCTTCCEEEECCSSCC-SC--CSSHHHHHHHHHHHGGGCCGGGCCEEEEE
T ss_pred EEEEEEECCCCCCCccHhHHHHHHHHHHHHhCCCceEEEEccCchh-hh--HHHHHHHHHHHHHHHHHhhhcCCCCeEEE
Confidence 455666678999987 3445665 57777 5433222110 00 233444444333 2 5578998
Q ss_pred ecCC
Q 048021 74 WVSA 77 (143)
Q Consensus 74 ~~~~ 77 (143)
.++.
T Consensus 113 ~v~~ 116 (154)
T 2z51_A 113 EIED 116 (154)
T ss_dssp EEET
T ss_pred EEEC
Confidence 8853
No 80
>1xhj_A Nitrogen fixation protein NIFU; alpha-beta, NIFU-like, structural genomics, protein structur initiative, NESG, PSI; NMR {Staphylococcus epidermidis} SCOP: d.52.8.1
Probab=58.51 E-value=15 Score=25.07 Aligned_cols=30 Identities=13% Similarity=0.195 Sum_probs=20.6
Q ss_pred EEEEEEeecChhhHH-------HHHHHHh-ccCCe-eEE
Q 048021 12 TCGLKVDTNDPAWFS-------SMTKVLR-KIKGA-SYT 41 (143)
Q Consensus 12 tvvlkV~m~C~gC~~-------kIkkaL~-kI~GV-sV~ 41 (143)
++.++..+.|.||.. .|+++|+ .+++| .|.
T Consensus 39 ~V~V~L~GaC~gCpss~~TLk~gIE~~L~~~vPev~~V~ 77 (88)
T 1xhj_A 39 IVKLQLHGACGTCPSSTITLKAGIERALHEEVPGVIEVE 77 (88)
T ss_dssp EEEEEEESSCCSSCHHHHHHHHHHHHHHHHHSTTCCEEE
T ss_pred EEEEEEeecCCCCcchHHHHHHHHHHHHHHhCCCceEEE
Confidence 566777789999953 4666665 57777 443
No 81
>2cte_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=58.32 E-value=11 Score=25.36 Aligned_cols=53 Identities=9% Similarity=0.160 Sum_probs=32.6
Q ss_pred ceEEEEEEeecChhhH-----HHHHHHHhccCCeeEEEeCC---CCEEEEEeecCHHHHHHHHh
Q 048021 10 KMTCGLKVDTNDPAWF-----SSMTKVLRKIKGASYTIDAE---EGMAYITGRANPRKLLRKLQ 65 (143)
Q Consensus 10 ~~tvvlkV~m~C~gC~-----~kIkkaL~kI~GVsV~VDle---~~~VtV~G~vdp~~Ll~aI~ 65 (143)
..+..|+|+-..-|.. +.|++ |..--|+.+.|+.. ++.|+|.|. ++.+.+|.+
T Consensus 16 ~~t~~i~Ip~~~ig~IIG~gG~~Ik~-I~~etg~~I~i~~~~~~~~~V~I~G~--~e~v~~A~~ 76 (94)
T 2cte_A 16 QASATVAIPKEHHRFVIGKNGEKLQD-LELKTATKIQIPRPDDPSNQIKITGT--KEGIEKARH 76 (94)
T ss_dssp CEEEEEECCTTTHHHHHCSSSCHHHH-HHHHTTCCCBCCCTTSSCCEEEEEEC--HHHHHHHHH
T ss_pred ceEEEEEEChHHeeeeECCCChhHHH-HHHHHCCEEEeCCCCCCCCeEEEEEC--HHHHHHHHH
Confidence 3456677765544444 44544 45446887777653 589999997 555555543
No 82
>2h1y_A Malonyl coenzyme A-acyl carrier protein transacyl; FABD, MCAT, transferase; 2.50A {Helicobacter pylori}
Probab=58.12 E-value=13 Score=30.28 Aligned_cols=53 Identities=13% Similarity=0.053 Sum_probs=41.4
Q ss_pred HHHHHHHHhccCCeeEEEeCCCCEEEEEeec-CHHHHHHHHhc-CC-ceEEeecCC
Q 048021 25 FSSMTKVLRKIKGASYTIDAEEGMAYITGRA-NPRKLLRKLQS-GK-YANLCWVSA 77 (143)
Q Consensus 25 ~~kIkkaL~kI~GVsV~VDle~~~VtV~G~v-dp~~Ll~aI~k-Gk-~Ael~~~~~ 77 (143)
...|++.|...+||.|......+.++|.|.. .-+++.+.+++ |. ++..+.+..
T Consensus 152 ~~~v~~~l~~~~~v~iA~~Nsp~~~VisG~~~al~~~~~~l~~~g~~~~~~L~v~~ 207 (321)
T 2h1y_A 152 EESLLSLCQRTKNVWCANFNGGMQVVLAGVKDDLKALEPTLKEMGAKRVVFLEMSV 207 (321)
T ss_dssp HHHHHHHHHTSTTEEEEEEEETTEEEEEEEHHHHTTSHHHHHHHTCSEEEECSSSC
T ss_pred HHHHHHHHhhcCCeEEEEEecCCcEEEEeCHHHHHHHHHHHHhcCCceEEECCCCC
Confidence 5678888888778877666678899999975 56778888888 87 788777753
No 83
>2lxf_A Uncharacterized protein; beaver fever, giardiasis, seattle structural genomics center infectious disease, ssgcid, structural genomics; NMR {Giardia lamblia}
Probab=56.55 E-value=52 Score=23.57 Aligned_cols=61 Identities=16% Similarity=0.166 Sum_probs=39.8
Q ss_pred CCCCceEEEEEEee--cChhhHHHHHHHHhccCCe-eEEEeCCCCEEEEEeec---CHHHHHHHHhcC
Q 048021 6 SSSAKMTCGLKVDT--NDPAWFSSMTKVLRKIKGA-SYTIDAEEGMAYITGRA---NPRKLLRKLQSG 67 (143)
Q Consensus 6 ~~s~~~tvvlkV~m--~C~gC~~kIkkaL~kI~GV-sV~VDle~~~VtV~G~v---dp~~Ll~aI~kG 67 (143)
++....++.|+|.+ .--|-..-+.+.-.++ |+ -+.-++.+|+|.|.-.. ..++++++|++|
T Consensus 29 ~~~di~t~~frV~G~VQGVGFR~~v~~~A~~l-gL~G~VrN~~dG~Vei~~eG~~~~v~~f~~~l~~g 95 (121)
T 2lxf_A 29 SSEDVTTLCYRVTGKVQGVFFRKYTKKEADAL-SLVGYVTNNEDGSVSGVVQGPKEQVDAFVKYLHKG 95 (121)
T ss_dssp CSTTEEEEEEEEEECTTCCCCHHHHHHHHHHH-TCEEEEEECTTSCEEEEEEEEHHHHHHHHHHHHHC
T ss_pred CccCEEEEEEEEEEeeCCcCchHHHHHHHHHc-CCEEEEEECCCCCEEEEEEECHHHHHHHHHHHHhC
Confidence 34444578899986 4455666666655554 67 47889999977776433 455677777663
No 84
>3krm_A Insulin-like growth factor 2 mRNA-binding protein 1; KH domain, cell projection, cytoplasm, nucleus, phosphoprotein, translation regulation; 2.75A {Homo sapiens}
Probab=54.72 E-value=52 Score=23.33 Aligned_cols=54 Identities=11% Similarity=0.203 Sum_probs=29.5
Q ss_pred CCceEEEEEEeecChhhH-----HHHHHHHhccCCeeEEEeCCCC-------EEEEEeecCHHHHHHHH
Q 048021 8 SAKMTCGLKVDTNDPAWF-----SSMTKVLRKIKGASYTIDAEEG-------MAYITGRANPRKLLRKL 64 (143)
Q Consensus 8 s~~~tvvlkV~m~C~gC~-----~kIkkaL~kI~GVsV~VDle~~-------~VtV~G~vdp~~Ll~aI 64 (143)
....++.|.|+-..-|+. +.|++ |+..-|+.+.|+.+.. .|+|.| +++.+.+|.
T Consensus 82 ~~~~~~~i~vp~~~~g~iIGkgG~~I~~-i~~~tga~I~i~~~~~~~~~~~~~v~I~G--~~~~v~~A~ 147 (163)
T 3krm_A 82 EVKLETHIRVPASAAGRVIGKGGKTVNE-LQNLTAAEVVVPRDQTPDENDQVIVKIIG--HFYASQMAQ 147 (163)
T ss_dssp CCCEEEEEEEETTTHHHHHCGGGHHHHH-HHHHHCCEEECCTTCCCCTTSEEEEEEEE--CHHHHHHHH
T ss_pred CCceEEEEEcChhheeeEEcCCChHHHH-HHHHhCCeEEECCCCCCCCCCceEEEEEe--CHHHHHHHH
Confidence 334566777765433332 34444 4554677676654321 788998 455555443
No 85
>1j4w_A FUSE binding protein; single-stranded DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: d.51.1.1 d.51.1.1
Probab=53.88 E-value=33 Score=24.85 Aligned_cols=52 Identities=15% Similarity=0.247 Sum_probs=32.6
Q ss_pred eEEEEEEeecChhhH-----HHHHHHHhccCCeeEEEeCC--------CCEEEEEeecCHHHHHHHHh
Q 048021 11 MTCGLKVDTNDPAWF-----SSMTKVLRKIKGASYTIDAE--------EGMAYITGRANPRKLLRKLQ 65 (143)
Q Consensus 11 ~tvvlkV~m~C~gC~-----~kIkkaL~kI~GVsV~VDle--------~~~VtV~G~vdp~~Ll~aI~ 65 (143)
.++.|.|+-..-|+. +.|++ |+..-|+.+.|+.+ ++.|+|.| +++.+.+|.+
T Consensus 104 ~~~~i~vp~~~~g~iIGkgG~~Ik~-I~~~tga~I~i~~~~~~~~~~~~~~v~I~G--~~~~v~~A~~ 168 (174)
T 1j4w_A 104 QEFNFIVPTGKTGLIIGKGGETIKS-ISQQSGARIELQRNPPPNADPNMKLFTIRG--TPQQIDYARQ 168 (174)
T ss_dssp CEEEEEEETTTHHHHHCGGGHHHHH-HHHHHCCEEEEECCCTTTSCTTEEEEEEEC--CHHHHHHHHH
T ss_pred EEEEEEEChHHcCeeECCCchHHHH-HHHHHCCEEEECCCCCCCCCCCceEEEEEC--CHHHHHHHHH
Confidence 356677765444444 34444 55656888888754 37889988 5666666653
No 86
>2ko1_A CTR148A, GTP pyrophosphokinase; homodimer, alpha+beta, transferase, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum} PDB: 3ibw_A
Probab=52.93 E-value=28 Score=21.62 Aligned_cols=26 Identities=23% Similarity=0.534 Sum_probs=13.6
Q ss_pred EEEEEeecChhhHHHHHHHHhccCCe
Q 048021 13 CGLKVDTNDPAWFSSMTKVLRKIKGA 38 (143)
Q Consensus 13 vvlkV~m~C~gC~~kIkkaL~kI~GV 38 (143)
++|.++..-..-.+++.+.|++++||
T Consensus 47 ~~i~v~~~~~~~l~~l~~~L~~~~~V 72 (88)
T 2ko1_A 47 CNLMIFVKNTDKLTTLMDKLRKVQGV 72 (88)
T ss_dssp EEEEEEESSHHHHHHHHHHHTTCTTE
T ss_pred EEEEEEECCHHHHHHHHHHHhcCCCc
Confidence 34444443334445666666666666
No 87
>2qc3_A MCT, malonyl COA-acyl carrier protein transacylase; malonyl-COA:ACP transacylase, , nucleophili fatty acids biosynthesis; 2.30A {Mycobacterium tuberculosis} PDB: 2qj3_A
Probab=52.88 E-value=14 Score=29.61 Aligned_cols=51 Identities=14% Similarity=0.021 Sum_probs=38.4
Q ss_pred HHHHHHHHhccCCeeEEEeCCCCEEEEEeec-CHHHHHHHHhc-CCceEEeecCC
Q 048021 25 FSSMTKVLRKIKGASYTIDAEEGMAYITGRA-NPRKLLRKLQS-GKYANLCWVSA 77 (143)
Q Consensus 25 ~~kIkkaL~kI~GVsV~VDle~~~VtV~G~v-dp~~Ll~aI~k-Gk~Ael~~~~~ 77 (143)
...|++.|. .+||.+......+.++|.|.. .-+++.+.+++ | ++..+.+..
T Consensus 140 ~~~v~~~l~-~~~v~iA~~Nsp~~~visG~~~~l~~~~~~l~~~g-~~~~L~v~~ 192 (303)
T 2qc3_A 140 ETEVLSRLE-QLDLVPANRNAAGQIVAAGRLTALEKLAEDPPAKA-RVRALGVAG 192 (303)
T ss_dssp HHHHHHHHH-HTTCEEEEEEETTEEEEEEEHHHHHHHHHSCCTTC-EEEECSCSS
T ss_pred HHHHHHHhc-cCCEEEEEEecCCcEEEEcCHHHHHHHHHHHHhCC-CEEECCCCC
Confidence 556777777 578887777788899999975 46677777777 9 888777743
No 88
>1r7h_A NRDH-redoxin; thioredoxin, glutaredoxin, redox protein, domain swapping, electron transport; 2.69A {Corynebacterium ammoniagenes} SCOP: c.47.1.1
Probab=52.62 E-value=20 Score=21.20 Aligned_cols=27 Identities=19% Similarity=0.167 Sum_probs=18.1
Q ss_pred eecChhhHHHHHHHHhccCCee-EEEeCCC
Q 048021 18 DTNDPAWFSSMTKVLRKIKGAS-YTIDAEE 46 (143)
Q Consensus 18 ~m~C~gC~~kIkkaL~kI~GVs-V~VDle~ 46 (143)
.-.|+.|. +++..|+++ |+. ..+|.+.
T Consensus 8 ~~~C~~C~-~~~~~l~~~-~i~~~~~di~~ 35 (75)
T 1r7h_A 8 KPACVQCT-ATKKALDRA-GLAYNTVDISL 35 (75)
T ss_dssp CTTCHHHH-HHHHHHHHT-TCCCEEEETTT
T ss_pred CCCChHHH-HHHHHHHHc-CCCcEEEECCC
Confidence 34799998 577778775 674 4555553
No 89
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A
Probab=52.51 E-value=25 Score=22.99 Aligned_cols=68 Identities=15% Similarity=0.171 Sum_probs=42.0
Q ss_pred CCCCceEEEEE-------E-eecChhhHHHHHHHHhccCCeeEEEeCCCCEEE---EEeec-CHHHHHHHHh-c-CCceE
Q 048021 6 SSSAKMTCGLK-------V-DTNDPAWFSSMTKVLRKIKGASYTIDAEEGMAY---ITGRA-NPRKLLRKLQ-S-GKYAN 71 (143)
Q Consensus 6 ~~s~~~tvvlk-------V-~m~C~gC~~kIkkaL~kI~GVsV~VDle~~~Vt---V~G~v-dp~~Ll~aI~-k-Gk~Ae 71 (143)
|....+++.+| | ++.-...+..+++.|....|| ..+.+++. ..|.. +.++.++.+. + |....
T Consensus 3 ~~~~~m~i~Vk~~g~~~~i~~v~~~~TV~~lK~~I~~~~gi----p~~~QkLi~~k~~Gk~L~D~~~L~~~~i~~g~~l~ 78 (90)
T 1v5t_A 3 SGSSGLPIIVKWGGQEYSVTTLSEDDTVLDLKQFLKTLTGV----LPERQKLLGLKVKGKPAENDVKLGALKLKPNTKIM 78 (90)
T ss_dssp CCCCSCCEEEEETTEEEEECSCCSSSBHHHHHHHHHHHTCC----CTTTCEEESCEETTEECCTTSBHHHHTCCTTEEEE
T ss_pred CCCceEEEEEEECCEEEEEEEeCCCCCHHHHHHHHHHHHCc----CHHHeEEEeeccCCcCcCCCCCHHHcCCCCCCEEE
Confidence 33445555544 5 555678899999999998886 45677777 66753 3333333332 3 66666
Q ss_pred EeecCC
Q 048021 72 LCWVSA 77 (143)
Q Consensus 72 l~~~~~ 77 (143)
|++..+
T Consensus 79 l~~~~~ 84 (90)
T 1v5t_A 79 MMGTRE 84 (90)
T ss_dssp EECCCS
T ss_pred EEecCc
Confidence 665543
No 90
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=52.39 E-value=43 Score=21.35 Aligned_cols=67 Identities=19% Similarity=0.195 Sum_probs=45.4
Q ss_pred EEEE-eecChhhHHHHHHHHhccCCe-eEEEeCCCCEEEEEe--ecCHHHHHHHHhc----CCceEEeecCCCCC
Q 048021 14 GLKV-DTNDPAWFSSMTKVLRKIKGA-SYTIDAEEGMAYITG--RANPRKLLRKLQS----GKYANLCWVSAGNQ 80 (143)
Q Consensus 14 vlkV-~m~C~gC~~kIkkaL~kI~GV-sV~VDle~~~VtV~G--~vdp~~Ll~aI~k----Gk~Ael~~~~~~~s 80 (143)
+|-| ++.-.--...|++.+.+.-.| +|.+....+-..|+= ..++++.++.+.. |+...+....+...
T Consensus 17 ~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~~~ 91 (99)
T 2cpj_A 17 RLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDKGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFACHSAS 91 (99)
T ss_dssp EEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETTTTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEESSCCSC
T ss_pred EEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecCCCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEcCCCCC
Confidence 4555 566666788899999988778 788888888887773 2345555555543 67777666655443
No 91
>1wjk_A C330018D20RIK protein; glutaredoxin, thioredoxin fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1
Probab=52.10 E-value=47 Score=21.69 Aligned_cols=33 Identities=15% Similarity=0.052 Sum_probs=20.0
Q ss_pred EEEEEEeecChhhHHHHHHHHhcc-CCee-EEEeCC
Q 048021 12 TCGLKVDTNDPAWFSSMTKVLRKI-KGAS-YTIDAE 45 (143)
Q Consensus 12 tvvlkV~m~C~gC~~kIkkaL~kI-~GVs-V~VDle 45 (143)
++++=..-.|+-|. .++..|.++ .+|. ..||.+
T Consensus 18 ~v~~f~~~~C~~C~-~~~~~L~~l~~~i~~~~vdi~ 52 (100)
T 1wjk_A 18 VLTLFTKAPCPLCD-EAKEVLQPYKDRFILQEVDIT 52 (100)
T ss_dssp EEEEEECSSCHHHH-HHHHHTSTTSSSSEEEEEETT
T ss_pred EEEEEeCCCCcchH-HHHHHHHHhhhCCeEEEEECC
Confidence 34433334799997 667778765 4563 455554
No 92
>3qmx_A Glutaredoxin A, glutaredoxin 3; electron transport; 1.82A {Synechocystis SP} SCOP: c.47.1.0
Probab=52.03 E-value=20 Score=23.78 Aligned_cols=34 Identities=9% Similarity=0.066 Sum_probs=21.8
Q ss_pred eEEEEEEeecChhhHHHHHHHHhccCCee-EEEeCCC
Q 048021 11 MTCGLKVDTNDPAWFSSMTKVLRKIKGAS-YTIDAEE 46 (143)
Q Consensus 11 ~tvvlkV~m~C~gC~~kIkkaL~kI~GVs-V~VDle~ 46 (143)
..+++=..-.|+-|. ++++.|.++ ||. ..+|++.
T Consensus 16 ~~v~vy~~~~Cp~C~-~ak~~L~~~-~i~y~~idI~~ 50 (99)
T 3qmx_A 16 AKIEIYTWSTCPFCM-RALALLKRK-GVEFQEYCIDG 50 (99)
T ss_dssp CCEEEEECTTCHHHH-HHHHHHHHH-TCCCEEEECTT
T ss_pred CCEEEEEcCCChhHH-HHHHHHHHC-CCCCEEEEcCC
Confidence 345554456899998 667778775 673 4455543
No 93
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=50.12 E-value=27 Score=21.91 Aligned_cols=55 Identities=15% Similarity=0.068 Sum_probs=32.2
Q ss_pred eEEEEEE-eecChhhHHHHHHHHhccCCe-eEEEe--CCCCE----EEEEeecCHHHHHHHHhc
Q 048021 11 MTCGLKV-DTNDPAWFSSMTKVLRKIKGA-SYTID--AEEGM----AYITGRANPRKLLRKLQS 66 (143)
Q Consensus 11 ~tvvlkV-~m~C~gC~~kIkkaL~kI~GV-sV~VD--le~~~----VtV~G~vdp~~Ll~aI~k 66 (143)
...+|-| ++.-.-....|++.+.+.-.| ++.+- ...++ ..|+= .+++...+||+.
T Consensus 14 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f-~~~~~A~~A~~~ 76 (95)
T 2cqc_A 14 PNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYF-ENVDDAKEAKER 76 (95)
T ss_dssp GGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEE-SSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEE-CCHHHHHHHHHH
Confidence 3445555 566667788899999988667 66553 33332 33321 245555555553
No 94
>1h75_A Glutaredoxin-like protein NRDH; electron transport, thioredoxin, redox protein; 1.7A {Escherichia coli} SCOP: c.47.1.1
Probab=49.55 E-value=23 Score=21.46 Aligned_cols=26 Identities=8% Similarity=0.160 Sum_probs=17.7
Q ss_pred ecChhhHHHHHHHHhccCCee-EEEeCCC
Q 048021 19 TNDPAWFSSMTKVLRKIKGAS-YTIDAEE 46 (143)
Q Consensus 19 m~C~gC~~kIkkaL~kI~GVs-V~VDle~ 46 (143)
-.|+.|. +++..|.++ |+. ..+|.++
T Consensus 9 ~~C~~C~-~~~~~l~~~-~i~~~~vdi~~ 35 (81)
T 1h75_A 9 NDCVQCH-ATKRAMENR-GFDFEMINVDR 35 (81)
T ss_dssp TTCHHHH-HHHHHHHHT-TCCCEEEETTT
T ss_pred CCChhHH-HHHHHHHHC-CCCeEEEECCC
Confidence 4799998 577778774 674 4555543
No 95
>2hc5_A ORF 99, hypothetical protein YVYC; NESG, GFT-PSI, protein structure initiative, northeast structural genomics consortium, alpha-beta, FLAG; NMR {Bacillus subtilis} SCOP: d.352.1.1
Probab=48.32 E-value=31 Score=24.66 Aligned_cols=41 Identities=15% Similarity=0.307 Sum_probs=28.4
Q ss_pred HHHHHHHhccC-CeeEEEeCCCCEEEEE------e----ecCHHHHHHHHhc
Q 048021 26 SSMTKVLRKIK-GASYTIDAEEGMAYIT------G----RANPRKLLRKLQS 66 (143)
Q Consensus 26 ~kIkkaL~kI~-GVsV~VDle~~~VtV~------G----~vdp~~Ll~aI~k 66 (143)
+++.+.|+.+. ++.+.+|.+.+++.|+ | .++|+++++.+++
T Consensus 45 ~~lN~~~~~~n~~L~F~vdee~~~~vVkVvD~~TgEVIRqIPpEe~L~l~~~ 96 (117)
T 2hc5_A 45 GEMNKLLEPSQVHLKFELHDKLNEYYVKVIEDSTNEVIREIPPKRWLDFYAA 96 (117)
T ss_dssp HHHHHHHTTSSCCEEEEEEEETTEEEEEEEETTTTEEEEEECHHHHHHHHHH
T ss_pred HHHHHHHHhcCCceEEEEecCCCcEEEEEEECCCCcEEEeCChHHHHHHHHH
Confidence 34444444432 3369999999999987 3 3689999987776
No 96
>2hiy_A Hypothetical protein; COG3797, structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GOL; 1.40A {Streptococcus pneumoniae} SCOP: d.356.1.1
Probab=47.36 E-value=35 Score=25.76 Aligned_cols=48 Identities=15% Similarity=0.244 Sum_probs=35.8
Q ss_pred HHHHHHHHhccCCe-eEEEeCCCCEEEEEeecCHHHHHHHHh----c--CCceEEe
Q 048021 25 FSSMTKVLRKIKGA-SYTIDAEEGMAYITGRANPRKLLRKLQ----S--GKYANLC 73 (143)
Q Consensus 25 ~~kIkkaL~kI~GV-sV~VDle~~~VtV~G~vdp~~Ll~aI~----k--Gk~Ael~ 73 (143)
-..++.+|.++ |- +|..=+..|-|..+...+++.|.++|+ + |+++.++
T Consensus 24 MadLr~~l~~l-Gf~~V~TyI~SGNvvF~s~~~~~~l~~~ie~~l~~~fg~~v~v~ 78 (183)
T 2hiy_A 24 MAELRQELTNL-GLEKVESYINSGNIFFTSIDSKAQLVEKLETFFAVHYPFIQSFS 78 (183)
T ss_dssp HHHHHHHHHHH-TCEEEEEETTTTEEEEEECSCHHHHHHHHHHHHHHHCTTCCCCE
T ss_pred HHHHHHHHHHc-CCccceEEEecCCEEEecCCCHHHHHHHHHHHHHHhcCCCCCEE
Confidence 45677888887 77 799999999999998767666555554 4 9887533
No 97
>1lu4_A Soluble secreted antigen MPT53; thioredoxin-like fold, structural genomics, PSI, protein structure initiative; 1.12A {Mycobacterium tuberculosis} SCOP: c.47.1.10
Probab=47.08 E-value=55 Score=21.04 Aligned_cols=48 Identities=8% Similarity=-0.076 Sum_probs=30.1
Q ss_pred eecChhhHHHH---HHHHhccCCee-EEEeCCCCEEEEEeecCHHHHHHHHhc-CCceEEee
Q 048021 18 DTNDPAWFSSM---TKVLRKIKGAS-YTIDAEEGMAYITGRANPRKLLRKLQS-GKYANLCW 74 (143)
Q Consensus 18 ~m~C~gC~~kI---kkaL~kI~GVs-V~VDle~~~VtV~G~vdp~~Ll~aI~k-Gk~Ael~~ 74 (143)
...|+.|.+.. .+..++.+++. +.|+.+ .+++.+.+.+++ |....++.
T Consensus 33 ~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~~~---------~~~~~~~~~~~~~~~~~~~~~ 85 (136)
T 1lu4_A 33 TPWCPFCNAEAPSLSQVAAANPAVTFVGIATR---------ADVGAMQSFVSKYNLNFTNLN 85 (136)
T ss_dssp CTTCHHHHHHHHHHHHHHHHCTTSEEEEEECS---------SCHHHHHHHHHHHTCCSEEEE
T ss_pred CCcChhHHHHHHHHHHHHHHCCCcEEEEEEcC---------CCHHHHHHHHHHcCCCceEEE
Confidence 45899998643 33334445553 555443 357888888888 87766554
No 98
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=46.35 E-value=49 Score=20.64 Aligned_cols=71 Identities=17% Similarity=0.117 Sum_probs=42.3
Q ss_pred CCCCCCceEEEEEE-eecChhhHHHHHHHHhccCCe-eEEEeC-CCCEEEEEee---cCHHHHHHHHhc------CCceE
Q 048021 4 SSSSSAKMTCGLKV-DTNDPAWFSSMTKVLRKIKGA-SYTIDA-EEGMAYITGR---ANPRKLLRKLQS------GKYAN 71 (143)
Q Consensus 4 ss~~s~~~tvvlkV-~m~C~gC~~kIkkaL~kI~GV-sV~VDl-e~~~VtV~G~---vdp~~Ll~aI~k------Gk~Ae 71 (143)
|+.+......+|-| ++.-.--...|++.+... +| +|.+-. ..++-.-.+- .+++...+||+. |+...
T Consensus 2 s~~~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~~g~~~~gr~i~ 80 (91)
T 2dgw_A 2 SSGSSGTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALKCNREYMGGRYIE 80 (91)
T ss_dssp CCCCCCCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHHSCSEEETTEEEE
T ss_pred CCCCCCCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHHhCCceeCCcEEE
Confidence 45555555566666 466566688899999998 88 665533 3443222221 366667777753 55555
Q ss_pred Eeec
Q 048021 72 LCWV 75 (143)
Q Consensus 72 l~~~ 75 (143)
+...
T Consensus 81 v~~a 84 (91)
T 2dgw_A 81 VFRE 84 (91)
T ss_dssp EEEE
T ss_pred EEEC
Confidence 5444
No 99
>3lvj_C Sulfurtransferase TUSA; protein-protein complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PLP; 2.44A {Escherichia coli} SCOP: d.68.3.3 PDB: 3lvk_B* 1dcj_A
Probab=45.89 E-value=59 Score=21.05 Aligned_cols=53 Identities=13% Similarity=-0.002 Sum_probs=35.4
Q ss_pred EEEEEe-ecChhhHHHHHHHHhccCCeeEEEeCCCCEEEEEee--cCHHHHHHHHhc-CCceEEe
Q 048021 13 CGLKVD-TNDPAWFSSMTKVLRKIKGASYTIDAEEGMAYITGR--ANPRKLLRKLQS-GKYANLC 73 (143)
Q Consensus 13 vvlkV~-m~C~gC~~kIkkaL~kI~GVsV~VDle~~~VtV~G~--vdp~~Ll~aI~k-Gk~Ael~ 73 (143)
.+|.+- +.|+.-.-+++++|++++ ....+.|..+ .....|.+.+++ |+.+...
T Consensus 11 ~~lD~rGl~CP~Pvl~~kkal~~l~--------~G~~l~V~~dd~~a~~di~~~~~~~G~~~~~~ 67 (82)
T 3lvj_C 11 HTLDALGLRCPEPVMMVRKTVRNMQ--------PGETLLIIADDPATTRDIPGFCTFMEHELVAK 67 (82)
T ss_dssp EEEECTTCCTTHHHHHHHHHHHTSC--------TTCEEEEEECCTTHHHHHHHHHHHTTCEEEEE
T ss_pred EEEECCCCCCCHHHHHHHHHHHhCC--------CCCEEEEEECCccHHHHHHHHHHHCCCEEEEE
Confidence 344443 489999999999999984 1223444332 345678888888 9987654
No 100
>3q9p_A Heat shock protein beta-1; alpha-crystallin domain, chaperone, charcot-marie-tooth DISE neuronopathy, IG-like fold, stress response; 2.00A {Homo sapiens} PDB: 3q9q_A
Probab=45.57 E-value=14 Score=24.16 Aligned_cols=24 Identities=21% Similarity=0.447 Sum_probs=19.2
Q ss_pred ccCCe---eEEEeCCCCEEEEEeecCH
Q 048021 34 KIKGA---SYTIDAEEGMAYITGRANP 57 (143)
Q Consensus 34 kI~GV---sV~VDle~~~VtV~G~vdp 57 (143)
.++|+ +++|.++++.++|+|....
T Consensus 14 dlPG~~~edi~V~v~~~~L~I~g~~~~ 40 (85)
T 3q9p_A 14 DVNHFAPDELTVKTKDGVVEITGKHAA 40 (85)
T ss_dssp ECTTTCCSEEEEEEETTEEEEEEEEC-
T ss_pred ECCCCChHHEEEEEECCEEEEEEEEcc
Confidence 46788 3999999999999997543
No 101
>1t1v_A SH3BGRL3, SH3 domain-binding glutamic acid-rich protein-LIK; glutaredoxin, thioredoxin fold, protein 3D-structure, X-RAY crystallography; 1.60A {Mus musculus} SCOP: c.47.1.14 PDB: 1j0f_A 1sj6_A
Probab=45.38 E-value=29 Score=22.27 Aligned_cols=33 Identities=15% Similarity=0.122 Sum_probs=22.8
Q ss_pred EEEEEeecChhhH-----HHHHHHHhccCCee-EEEeCCC
Q 048021 13 CGLKVDTNDPAWF-----SSMTKVLRKIKGAS-YTIDAEE 46 (143)
Q Consensus 13 vvlkV~m~C~gC~-----~kIkkaL~kI~GVs-V~VDle~ 46 (143)
+++=.--.|+-|. +++++.|.+ .||. .++|+..
T Consensus 4 v~ly~~~~C~~c~~~~~~~~ak~~L~~-~~i~~~~~di~~ 42 (93)
T 1t1v_A 4 LRVYSTSVTGSREIKSQQSEVTRILDG-KRIQYQLVDISQ 42 (93)
T ss_dssp EEEEECSSCSCHHHHHHHHHHHHHHHH-TTCCCEEEETTS
T ss_pred EEEEEcCCCCCchhhHHHHHHHHHHHH-CCCceEEEECCC
Confidence 3333345799997 788998887 5784 5666654
No 102
>2e9h_A EIF-5, eukaryotic translation initiation factor 5; zinc binding, C4 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=45.17 E-value=25 Score=26.59 Aligned_cols=30 Identities=23% Similarity=0.341 Sum_probs=26.8
Q ss_pred CeeEEEeCCCCEEEEEeecCHHHHHHHHhc
Q 048021 37 GASYTIDAEEGMAYITGRANPRKLLRKLQS 66 (143)
Q Consensus 37 GVsV~VDle~~~VtV~G~vdp~~Ll~aI~k 66 (143)
|..-.+|.++++++|.|..++.+|.+.|++
T Consensus 69 Gt~g~id~~~~rlii~G~~~~~~i~~~L~~ 98 (157)
T 2e9h_A 69 GAQTQFDVKNDRYIVNGSHEANKLQDMLDG 98 (157)
T ss_dssp TCCEEEETTTTEEEEEBCCCHHHHHHHHHH
T ss_pred CCceeecCCCCEEEEEeeeCHHHHHHHHHH
Confidence 556789989999999999999999999976
No 103
>2fwh_A Thiol:disulfide interchange protein DSBD; thioredoxin-like, C-terminal domain, reduced form at PH7, oxidoreductase; 0.99A {Escherichia coli} SCOP: c.47.1.1 PDB: 2fwe_A 2fwf_A 2fwg_A 1vrs_D 1uc7_A
Probab=45.03 E-value=20 Score=24.20 Aligned_cols=61 Identities=16% Similarity=0.090 Sum_probs=31.2
Q ss_pred EEEEEe-ecChhhHHHH------HHHHhccCCe-eEEEeCCCCEEEEEeecCHHHHHHHHhc-CCceEEeecCCCC
Q 048021 13 CGLKVD-TNDPAWFSSM------TKVLRKIKGA-SYTIDAEEGMAYITGRANPRKLLRKLQS-GKYANLCWVSAGN 79 (143)
Q Consensus 13 vvlkV~-m~C~gC~~kI------kkaL~kI~GV-sV~VDle~~~VtV~G~vdp~~Ll~aI~k-Gk~Ael~~~~~~~ 79 (143)
+++..- --|+.|.+-. .+..+.++++ -+.||.+... -....|.++..- |..+.++--.+|+
T Consensus 34 vlv~F~a~wC~~C~~~~~~~~~~~~l~~~~~~~~~~~vd~~~~~------~~~~~l~~~~~v~~~Pt~~~~d~~G~ 103 (134)
T 2fwh_A 34 VMLDLYADWCVACKEFEKYTFSDPQVQKALADTVLLQANVTAND------AQDVALLKHLNVLGLPTILFFDGQGQ 103 (134)
T ss_dssp EEEEEECTTCHHHHHHHHHTTTSHHHHHHTTTSEEEEEECTTCC------HHHHHHHHHTTCCSSSEEEEECTTSC
T ss_pred EEEEEECCCCHHHHHHHHHhcCCHHHHHHhcCcEEEEEeCCCCc------chHHHHHHHcCCCCCCEEEEECCCCC
Confidence 344443 4799998643 2333345667 3666664321 123344444444 7776655534444
No 104
>3vow_A Probable DNA DC->DU-editing enzyme apobec-3C; antiviral deffense, HOST-virus interaction, metal- HIV-1 VIF, BET, single domain, sivagm, hydrolase; 2.15A {Homo sapiens} PDB: 3vm8_A
Probab=44.59 E-value=15 Score=28.65 Aligned_cols=48 Identities=19% Similarity=0.214 Sum_probs=33.6
Q ss_pred cChhhHHHHHHHHhccCCeeEEEeCCCCEEEEE-eec----CH--HHHHHHHhc-CCceEEeecC
Q 048021 20 NDPAWFSSMTKVLRKIKGASYTIDAEEGMAYIT-GRA----NP--RKLLRKLQS-GKYANLCWVS 76 (143)
Q Consensus 20 ~C~gC~~kIkkaL~kI~GVsV~VDle~~~VtV~-G~v----dp--~~Ll~aI~k-Gk~Ael~~~~ 76 (143)
-|..|+++|.+.|++-+.|+. +|- +++ ++ .+=++.|.+ |-++.|...+
T Consensus 96 PC~~CA~~va~FL~~~~~v~L---------~If~aRLY~~~~~~~q~gLr~L~~~G~~v~iM~~~ 151 (190)
T 3vow_A 96 PCPDCAGEVAEFLARHSNVNL---------TIFTARLYYFQYPCYQEGLRSLSQEGVAVEIMDYE 151 (190)
T ss_dssp CCHHHHHHHHHHHHHCTTEEE---------EEEEEECTTTTSHHHHHHHHHHHHHTCEEEECCHH
T ss_pred chHHHHHHHHHHHHhCCCeEE---------EEEEEecccccCchHHHHHHHHHHCCCcEEEeChH
Confidence 699999999999999888843 332 332 22 344556666 9888887764
No 105
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=44.47 E-value=59 Score=20.65 Aligned_cols=72 Identities=17% Similarity=0.111 Sum_probs=41.9
Q ss_pred CCCCCceEEEEEE-eecChhhHHHHHHHHhccCCe-eEEEeCC------CCEEEEEeecCHHHHHHHH---hc----CCc
Q 048021 5 SSSSAKMTCGLKV-DTNDPAWFSSMTKVLRKIKGA-SYTIDAE------EGMAYITGRANPRKLLRKL---QS----GKY 69 (143)
Q Consensus 5 s~~s~~~tvvlkV-~m~C~gC~~kIkkaL~kI~GV-sV~VDle------~~~VtV~G~vdp~~Ll~aI---~k----Gk~ 69 (143)
++.......+|-| ++.-.-....|++.+.+.-.| +|.+-.+ .+-..|+= .+++...+|| .. |+.
T Consensus 5 ~~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f-~~~~~A~~A~~~l~g~~~~g~~ 83 (102)
T 1x5s_A 5 SSGMASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTF-ENIDDAKDAMMAMNGKSVDGRQ 83 (102)
T ss_dssp CCCCCCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEEC-SSHHHHHHHHHHHTTCCTTSCC
T ss_pred CCCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEE-CCHHHHHHHHHHhCCCEECCeE
Confidence 3333344455555 577777888899999988767 6777543 23455542 2444444444 32 666
Q ss_pred eEEeecCC
Q 048021 70 ANLCWVSA 77 (143)
Q Consensus 70 Ael~~~~~ 77 (143)
+.+-...+
T Consensus 84 l~v~~a~~ 91 (102)
T 1x5s_A 84 IRVDQAGK 91 (102)
T ss_dssp CEEEEEEC
T ss_pred EEEEECCC
Confidence 66655543
No 106
>1mla_A Malonyl-coenzyme A acyl carrier protein transacylase; acyltransferase; 1.50A {Escherichia coli} SCOP: c.19.1.1 d.58.23.1 PDB: 2g2o_A 2g1h_A 2g2y_A 2g2z_A* 3h0p_A 3hjv_A*
Probab=44.03 E-value=41 Score=26.77 Aligned_cols=52 Identities=19% Similarity=0.044 Sum_probs=39.0
Q ss_pred HHHHHHHHhccC--C-eeEEEeCCCCEEEEEeec-CHHHHHHHHhc-CC-ceEEeecC
Q 048021 25 FSSMTKVLRKIK--G-ASYTIDAEEGMAYITGRA-NPRKLLRKLQS-GK-YANLCWVS 76 (143)
Q Consensus 25 ~~kIkkaL~kI~--G-VsV~VDle~~~VtV~G~v-dp~~Ll~aI~k-Gk-~Ael~~~~ 76 (143)
...|++.|...+ | |.+......+.++|.|.. .-+++.+.+++ |. ++..+.+.
T Consensus 140 ~~~v~~~l~~~~~~~~v~iA~~Nsp~~~visG~~~~l~~~~~~l~~~g~~~~~~L~v~ 197 (309)
T 1mla_A 140 DASIAKACEEAAEGQVVSPVNFNSPGQVVIAGHKEAVERAGAACKAAGAKRALPLPVS 197 (309)
T ss_dssp HHHHHHHHHHHCTTSCEEEEEEEETTEEEEEEEHHHHHHHHHHHHHTTCSEEEECSCC
T ss_pred HHHHHHHHHhcCCCCeEEEEEEcCCCcEEEEccHHHHHHHHHHHHhcCCceEEECCCC
Confidence 567777777663 6 676666677899999975 56788888888 87 68777764
No 107
>2qn6_B Translation initiation factor 2 alpha subunit; initiation of translation, GTP-binding, nucleotide-binding, protein biosynthesis; HET: GDP; 2.15A {Sulfolobus solfataricus} SCOP: d.58.51.1 PDB: 2qmu_B* 3qsy_B*
Probab=43.68 E-value=75 Score=21.64 Aligned_cols=25 Identities=8% Similarity=0.080 Sum_probs=17.8
Q ss_pred eEEEEEEeecChh--hHHHHHHHHhcc
Q 048021 11 MTCGLKVDTNDPA--WFSSMTKVLRKI 35 (143)
Q Consensus 11 ~tvvlkV~m~C~g--C~~kIkkaL~kI 35 (143)
.++.--|+++|-+ -..+|++||.+-
T Consensus 4 vkIra~iel~c~~~dGIe~IK~AL~~a 30 (93)
T 2qn6_B 4 VKMSGLITVRTNEPLGVEKIKEVISKA 30 (93)
T ss_dssp EEEEEEEEEEECCTTTHHHHHHHHHHH
T ss_pred EEEEEEEEEEeCCCchHHHHHHHHHHH
Confidence 3455567788854 478999999754
No 108
>2dt9_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; 2.15A {Thermus thermophilus} PDB: 2zho_A
Probab=43.25 E-value=88 Score=22.41 Aligned_cols=65 Identities=17% Similarity=0.274 Sum_probs=41.3
Q ss_pred ceEEEEEEee-cChhhHHHHHHHHhccCCeeEEEeCCCCEEEEEeec---C---HHHHHHHHhc-CCceEEeec
Q 048021 10 KMTCGLKVDT-NDPAWFSSMTKVLRKIKGASYTIDAEEGMAYITGRA---N---PRKLLRKLQS-GKYANLCWV 75 (143)
Q Consensus 10 ~~tvvlkV~m-~C~gC~~kIkkaL~kI~GVsV~VDle~~~VtV~G~v---d---p~~Ll~aI~k-Gk~Ael~~~ 75 (143)
...+.|-|+- ..+...+.+++....+.. .++++.+-.+|.|.|.. . ..++.++|.+ |-.+..++.
T Consensus 59 ~~~isf~V~~~d~~~a~~~L~~~~~~~~~-~v~~~~~~a~vsvVG~gm~~~~Gv~a~~f~aL~~~~InI~~is~ 131 (167)
T 2dt9_A 59 RQQMAFTVKKDFAQEALEALEPVLAEIGG-EAILRPDIAKVSIVGVGLASTPEVPAKMFQAVASTGANIEMIAT 131 (167)
T ss_dssp EEEEEEEEEGGGHHHHHHHHHHHHHHHCC-EEEEECSEEEEEEEESSGGGSTHHHHHHHHHHHHTTCCCCEEEE
T ss_pred ceEEEEEEehHHHHHHHHHHHHHHHHhCC-cEEEeCCEEEEEEECCCcccCcCHHHHHHHHHHHCCCCEEEEEc
Confidence 4467777764 333344444443334553 66777666778888852 2 5788889988 999877763
No 109
>1v6f_A MGMF-beta, GLIA maturation factor, beta; actin binding protein, cytoskeleton, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.109.1.2
Probab=42.13 E-value=25 Score=25.39 Aligned_cols=70 Identities=17% Similarity=0.129 Sum_probs=40.9
Q ss_pred CCCCCCCceEEEEEEeecChhhHHHHHHHHhccC-Ce---eEEEeCCCCEEEEEe---ecCHHHHHHHHhc-CCceEEee
Q 048021 3 SSSSSSAKMTCGLKVDTNDPAWFSSMTKVLRKIK-GA---SYTIDAEEGMAYITG---RANPRKLLRKLQS-GKYANLCW 74 (143)
Q Consensus 3 ~ss~~s~~~tvvlkV~m~C~gC~~kIkkaL~kI~-GV---sV~VDle~~~VtV~G---~vdp~~Ll~aI~k-Gk~Ael~~ 74 (143)
||.|+.....+.+.|+ +.|..+.++.-.+-. .. -+.||.++.+|.|.. ..+.+.|++.|.. --+=.+..
T Consensus 2 ~~~~~~~~~~~~~~v~---~e~~~a~~~lr~~k~~~~~~iifki~~~~~~I~v~~~~~~~~~~el~~~Lp~~~prY~~~~ 78 (151)
T 1v6f_A 2 SSGSSGSESLVVCDVA---EDLVEKLRKFRFRKETHNAAIIMKIDKDERLVVLDEELEGVSPDELKDELPERQPRFIVYS 78 (151)
T ss_dssp CCCCCCCCCCCCCEEC---HHHHHHHHHHHTCCCSSCEEEEEEECSSSCEEEEEEEEESCCHHHHGGGSCSSSCEEEEEE
T ss_pred CCCCCCCCCceEEEEC---HHHHHHHHHHHhccCCCccEEEEEEcCCCcEEEEEecCCCCCHHHHHhhCCCCCceEEEEe
Confidence 3444444444445554 567777776543211 22 478888888888874 2578888887766 33333444
Q ss_pred c
Q 048021 75 V 75 (143)
Q Consensus 75 ~ 75 (143)
.
T Consensus 79 ~ 79 (151)
T 1v6f_A 79 Y 79 (151)
T ss_dssp C
T ss_pred c
Confidence 4
No 110
>1nm2_A Malonyl COA:acyl carrier protein malonyltransfera; alpha/beta hydrolase-like core; 2.00A {Streptomyces coelicolor} SCOP: c.19.1.1 d.58.23.1 PDB: 2cdh_4 2cf2_B
Probab=42.04 E-value=18 Score=29.08 Aligned_cols=51 Identities=12% Similarity=-0.076 Sum_probs=37.1
Q ss_pred HHHHHHHHhccCCeeEEEeCCCCEEEEEeec-CHHHHHHHHhc-CCceEEeecC
Q 048021 25 FSSMTKVLRKIKGASYTIDAEEGMAYITGRA-NPRKLLRKLQS-GKYANLCWVS 76 (143)
Q Consensus 25 ~~kIkkaL~kI~GVsV~VDle~~~VtV~G~v-dp~~Ll~aI~k-Gk~Ael~~~~ 76 (143)
...|++.|. .+||.+......+.++|.|.. .-+++.+.+++ |.++..+.+.
T Consensus 146 ~~~v~~~~~-~~~v~iA~~Nsp~~~VisG~~~~l~~~~~~l~~~g~~~~~L~v~ 198 (317)
T 1nm2_A 146 PEVSVAHLE-RLGLTPANVNGAGQIVAAGTMEQLAALNEDKPEGVRKVVPLKVA 198 (317)
T ss_dssp HHHHHHHHH-HTTCEEEEEEETTEEEEEEEHHHHHHHHHSCCTTEEEEEECSCS
T ss_pred HHHHHHHhc-cCCEEEEEEecCCcEEEEcCHHHHHHHHHHHHHCCCeEEECCCC
Confidence 456777777 578887777778899999975 45666677777 8777777664
No 111
>2jsx_A Protein NAPD; TAT, proofreading, cytoplasm, chaperone; NMR {Escherichia coli K12} PDB: 2pq4_A
Probab=41.94 E-value=47 Score=22.62 Aligned_cols=31 Identities=13% Similarity=0.274 Sum_probs=22.4
Q ss_pred EEEEEEeecChhhHHHHHHHHhccCCe-eEEE
Q 048021 12 TCGLKVDTNDPAWFSSMTKVLRKIKGA-SYTI 42 (143)
Q Consensus 12 tvvlkV~m~C~gC~~kIkkaL~kI~GV-sV~V 42 (143)
++++.++..+.+=..++-+.|++|+|| ++..
T Consensus 43 kiVV~iEa~~~~~l~~~i~~I~~i~GVlst~l 74 (95)
T 2jsx_A 43 QLIVVVEAEDSETLIQTIESVRNVEGVLAVSL 74 (95)
T ss_dssp EEEEEEEESSHHHHHHHHHHHTTSTTEEEEEE
T ss_pred CEEEEEEeCCHHHHHHHHHHHhcCCCccEEeE
Confidence 677788876655555555889999999 6544
No 112
>1vbk_A Hypothetical protein PH1313; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 1.90A {Pyrococcus horikoshii} SCOP: c.26.2.6 d.308.1.1
Probab=41.86 E-value=28 Score=28.12 Aligned_cols=41 Identities=12% Similarity=0.207 Sum_probs=21.3
Q ss_pred hHHHHHHHHhccCCee-EEEeCCCCEEEEEeecCHHHHHHHHhc
Q 048021 24 WFSSMTKVLRKIKGAS-YTIDAEEGMAYITGRANPRKLLRKLQS 66 (143)
Q Consensus 24 C~~kIkkaL~kI~GVs-V~VDle~~~VtV~G~vdp~~Ll~aI~k 66 (143)
..+.|+++|.. +++. -+|....+++.|.+. +++.++++|.+
T Consensus 26 L~~nI~~~L~~-~~~~~~~v~~~~gri~V~~~-~~~~~~~~L~~ 67 (307)
T 1vbk_A 26 LMNNIREALVT-EEVPYKEIFSRHGRIIVKTN-SPKEAANVLVR 67 (307)
T ss_dssp HHHHHHHHHHH-TTCCCSEEEEETTEEEEECS-CHHHHHHHHTT
T ss_pred HHHHHHHHhcc-cCccceeEEEECCEEEEEcC-CHHHHHHHHhh
Confidence 45555666655 4332 124444566666542 55566666655
No 113
>2y3m_A Emhofq, protein transport protein HOFQ; secretin, DNA uptake, competence; 2.30A {Aggregatibacter actinomycetemcomitans}
Probab=41.79 E-value=48 Score=23.95 Aligned_cols=48 Identities=15% Similarity=0.117 Sum_probs=34.0
Q ss_pred hHHHHHHHHhccCCeeEEEeCC-CCEEEEEe-ecCHHHHHHHHhc--CCceE
Q 048021 24 WFSSMTKVLRKIKGASYTIDAE-EGMAYITG-RANPRKLLRKLQS--GKYAN 71 (143)
Q Consensus 24 C~~kIkkaL~kI~GVsV~VDle-~~~VtV~G-~vdp~~Ll~aI~k--Gk~Ae 71 (143)
=.+.+-++|.+.-|+++.+|.+ +|+||+.- .+++.+++..|.+ |+...
T Consensus 16 ~i~~vl~~la~~~g~nivi~~~V~G~vTl~l~~v~~~~~l~~vl~~~gl~~~ 67 (175)
T 2y3m_A 16 PLVPTLQQLALAHNTNLIIDDELQGTVSLQLENVDLDQLFRSVAKIKQLDLW 67 (175)
T ss_dssp CHHHHHHHSCCCTTCEEEEC-----CCEEEEEESCHHHHHHHHHHHHTCCCE
T ss_pred CHHHHHHHHHHHhCCCEEeCCCCceEEEEEEcCCCHHHHHHHHHHHCCceEE
Confidence 3556677788888888777765 67888875 4788898888887 88765
No 114
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=41.30 E-value=65 Score=20.56 Aligned_cols=68 Identities=10% Similarity=0.071 Sum_probs=40.3
Q ss_pred eEEEEEE-eecChhhHHHHHHHHhccCCe-eEEEeCCC------CEEEEEeecCHHHHHHHHhc-------CCceEEeec
Q 048021 11 MTCGLKV-DTNDPAWFSSMTKVLRKIKGA-SYTIDAEE------GMAYITGRANPRKLLRKLQS-------GKYANLCWV 75 (143)
Q Consensus 11 ~tvvlkV-~m~C~gC~~kIkkaL~kI~GV-sV~VDle~------~~VtV~G~vdp~~Ll~aI~k-------Gk~Ael~~~ 75 (143)
...+|-| ++.-.--...|++.+.+.-.| +|.+-.+. +-..|+= .+++...+||+. |+...+...
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f-~~~~~a~~A~~~l~g~~~~g~~l~v~~a 92 (105)
T 1x5u_A 14 QDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEF-LSEEDADYAIKIMDMIKLYGKPIRVNKA 92 (105)
T ss_dssp TTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEE-SSHHHHHHHHHHSSSCBCSSCBCEEEET
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEE-CCHHHHHHHHHHhCCCeECCeEEEEEEC
Confidence 3445555 566667788899999998767 66664432 2344431 244555555542 666666666
Q ss_pred CCCC
Q 048021 76 SAGN 79 (143)
Q Consensus 76 ~~~~ 79 (143)
.+..
T Consensus 93 ~~~~ 96 (105)
T 1x5u_A 93 SAHN 96 (105)
T ss_dssp TTTS
T ss_pred CCCC
Confidence 5443
No 115
>2j58_A WZA, outer membrane lipoprotein WZA; membrane protein; 2.26A {Escherichia coli} PDB: 2w8i_A 2w8h_A*
Probab=40.93 E-value=30 Score=28.76 Aligned_cols=52 Identities=17% Similarity=0.297 Sum_probs=37.4
Q ss_pred EEEe-ecChhhHHHHHHHHhcc-CC--eeEEE-eCCCCEEEEEeec---------C-HHHHHHHHhc
Q 048021 15 LKVD-TNDPAWFSSMTKVLRKI-KG--ASYTI-DAEEGMAYITGRA---------N-PRKLLRKLQS 66 (143)
Q Consensus 15 lkV~-m~C~gC~~kIkkaL~kI-~G--VsV~V-Dle~~~VtV~G~v---------d-p~~Ll~aI~k 66 (143)
++|. ++-+.-++.|+++|++. .. |+|.+ .....+|+|.|++ + ...|+++|..
T Consensus 114 v~vaG~T~~e~~~~I~~~L~~~~~~P~V~V~v~~~~~~~V~V~GeV~~PG~y~l~~~~~tl~~ai~~ 180 (359)
T 2j58_A 114 VQVAGKTVSQVRQDITSRLTTYIESPQVDVSIAAFRSQKVYVTGEVANSGKQAITNIPLTVMDAINA 180 (359)
T ss_dssp EECTTCCHHHHHHHHHHHHTTTSSSCCEEEEEEECCSCEEEEEESBSSCEEEECCSSCCBHHHHHHH
T ss_pred EEECCCCHHHHHHHHHHHHHHhccCCeEEEEEccCCceEEEEEceecCCeEEEeCCCCCcHHHHHHH
Confidence 4554 47888999999999864 22 23444 3346699999964 2 6799999988
No 116
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=40.60 E-value=69 Score=20.39 Aligned_cols=66 Identities=12% Similarity=0.100 Sum_probs=40.3
Q ss_pred ceEEEEEE-eecChhhHHHHHHHHhccCCe-eEEEeCC----CCEEEEEeecCHHHHHHHHhc-------CCceEEeecC
Q 048021 10 KMTCGLKV-DTNDPAWFSSMTKVLRKIKGA-SYTIDAE----EGMAYITGRANPRKLLRKLQS-------GKYANLCWVS 76 (143)
Q Consensus 10 ~~tvvlkV-~m~C~gC~~kIkkaL~kI~GV-sV~VDle----~~~VtV~G~vdp~~Ll~aI~k-------Gk~Ael~~~~ 76 (143)
....+|-| ++.-.--...|++.+.+.-.| +|.|-.+ .+...|+= .+++...+||+. |+...+....
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~g~afV~f-~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 91 (103)
T 2cq3_A 13 STPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTF-ENSADADRAREKLHGTVVEGRKIEVNNAT 91 (103)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTTTCCEEEEEE-SCHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcEEEEEEE-CCHHHHHHHHHHhCCCEECCEEEEEEEcc
Confidence 33455666 577777888999999998777 6777655 34455542 244444445542 5555555543
No 117
>2y1y_A Alpha-crystallin B chain,; small heat shock protein, chaperone, stress protein, eye LEN protein, cataract; HET: MSE; 2.00A {Homo sapiens} PDB: 2y22_A 2wj7_A 3l1g_A 2y1z_A
Probab=40.54 E-value=16 Score=23.99 Aligned_cols=22 Identities=9% Similarity=0.199 Sum_probs=18.1
Q ss_pred ccCCe---eEEEeCCCCEEEEEeec
Q 048021 34 KIKGA---SYTIDAEEGMAYITGRA 55 (143)
Q Consensus 34 kI~GV---sV~VDle~~~VtV~G~v 55 (143)
.++|+ +++|.++++.++|+|..
T Consensus 13 dlPG~~~edi~V~v~~~~L~I~g~~ 37 (90)
T 2y1y_A 13 DVKHFSPEELKVKVLGDVIEVHGKH 37 (90)
T ss_dssp ECTTSCGGGEEEEEETTEEEEEEEE
T ss_pred ECCCCcHHHeEEEEECCEEEEEEEE
Confidence 46888 38888889999999964
No 118
>1in0_A YAJQ protein, HI1034; alpha and beta sandwich, structural genomics, structure 2 function project, S2F, unknown function; 2.14A {Haemophilus influenzae} SCOP: d.58.49.1 d.58.49.1
Probab=40.04 E-value=42 Score=25.64 Aligned_cols=53 Identities=11% Similarity=0.229 Sum_probs=38.5
Q ss_pred EEEEEe-ecChhhHHHHHHHHhccCCeeEEEeCCCCEEEEEeec--CHHHHHHHHhc
Q 048021 13 CGLKVD-TNDPAWFSSMTKVLRKIKGASYTIDAEEGMAYITGRA--NPRKLLRKLQS 66 (143)
Q Consensus 13 vvlkV~-m~C~gC~~kIkkaL~kI~GVsV~VDle~~~VtV~G~v--dp~~Ll~aI~k 66 (143)
.++++. +--..-+++|.+.++. .+..|.......+|.|+|.- |-.+++..|+.
T Consensus 94 q~~~lk~GI~~e~AKkIvK~IKd-sklKVqa~IQGd~vRVtgKkrDDLQ~viallk~ 149 (163)
T 1in0_A 94 KEIKLKQGIETEMAKKITKLVKD-SKIKVQTQIQGEQVRVTGKSRDDLQAVIQLVKS 149 (163)
T ss_dssp EEEEECCSCCHHHHHHHHHHHHH-HTCSEEEEEETTEEEEEESCHHHHHHHHHHHHH
T ss_pred EEEEeecccCHHHHHHHHHHHHh-cCCcceeEecCcEEEEecCCHHHHHHHHHHHHh
Confidence 344442 4467778899998876 34457777888899999964 77788888875
No 119
>1je3_A EC005, hypothetical 8.6 kDa protein in AMYA-FLIE intergenic region; mixed alpha-beta structure, structural genomics; NMR {Escherichia coli} SCOP: d.68.3.3
Probab=39.98 E-value=82 Score=21.38 Aligned_cols=56 Identities=7% Similarity=0.013 Sum_probs=36.4
Q ss_pred eEEEEEEe---ecChhhHHHHHHHHhccCCeeEEEeCCCCEEEEEee--cCHHHHHHHHhc-CCceEEee
Q 048021 11 MTCGLKVD---TNDPAWFSSMTKVLRKIKGASYTIDAEEGMAYITGR--ANPRKLLRKLQS-GKYANLCW 74 (143)
Q Consensus 11 ~tvvlkV~---m~C~gC~~kIkkaL~kI~GVsV~VDle~~~VtV~G~--vdp~~Ll~aI~k-Gk~Ael~~ 74 (143)
|+....++ +.|+.=.-+++++|++++. ...+.|..+ .....|.+.+++ |+.+....
T Consensus 24 m~~~~~LD~rGl~CP~PvlktkkaL~~l~~--------Ge~L~Vl~dd~~a~~dIp~~~~~~G~~v~~~e 85 (97)
T 1je3_A 24 IVPDYRLDMVGEPCPYPAVATLEAMPQLKK--------GEILEVVSDCPQSINNIPLDARNHGYTVLDIQ 85 (97)
T ss_dssp CCEEEEECSBCCSSSSSTHHHHHHTTTCCS--------SCEEEEEEBCSSSSCHHHHHHHHHTCSEEEEE
T ss_pred CCcCeEEeCCCCCCCHHHHHHHHHHHcCCC--------CCEEEEEECCcchHHHHHHHHHHCCCEEEEEE
Confidence 33334455 3899999999999999842 223333322 344667788888 99876543
No 120
>3v4k_A DNA DC->DU-editing enzyme apobec-3G; antiviral defense, HOST-virus interaction, hydrola metal-binding, nucleus; HET: DNA; 1.38A {Homo sapiens} PDB: 3v4j_A* 3ir2_A* 2kem_A* 2jyw_A* 2kbo_A* 3e1u_A* 3iqs_A*
Probab=39.95 E-value=20 Score=28.27 Aligned_cols=54 Identities=22% Similarity=0.164 Sum_probs=35.8
Q ss_pred cChhhHHHHHHHHhccCCeeEEEeCCCCEEEEEeecCHHHHHHHHhc-CCceEEeecC
Q 048021 20 NDPAWFSSMTKVLRKIKGASYTIDAEEGMAYITGRANPRKLLRKLQS-GKYANLCWVS 76 (143)
Q Consensus 20 ~C~gC~~kIkkaL~kI~GVsV~VDle~~~VtV~G~vdp~~Ll~aI~k-Gk~Ael~~~~ 76 (143)
-|..|+++|.+.|.+-+.|+..|=. .++.-. .-+-.+=++.|.+ |-++.+...+
T Consensus 110 PC~~CA~~v~~FL~~~~~v~L~If~--aRLY~~-~~~~~~gLr~L~~aG~~v~iM~~~ 164 (203)
T 3v4k_A 110 PCFSCAQEMAKFISKNKHVSLCIKT--ARIYDD-QGRCQEGLRTLAEAGAKISIMTYS 164 (203)
T ss_pred ChHHHHHHHHHHHhhCCCeEEEEEE--Eeeccc-CchHHHHHHHHHHCCCeEEecCHH
Confidence 6999999999999999888543322 123322 2344555666666 9888776653
No 121
>3ptw_A Malonyl COA-acyl carrier protein transacylase; structural genomics, protein structure initiative; 2.10A {Clostridium perfringens}
Probab=39.89 E-value=51 Score=26.74 Aligned_cols=53 Identities=21% Similarity=0.168 Sum_probs=39.4
Q ss_pred HHHHHHHHhccC--C-eeEEEeCCCCEEEEEeec-CHHHHHHHHhc-CCceEEeecCC
Q 048021 25 FSSMTKVLRKIK--G-ASYTIDAEEGMAYITGRA-NPRKLLRKLQS-GKYANLCWVSA 77 (143)
Q Consensus 25 ~~kIkkaL~kI~--G-VsV~VDle~~~VtV~G~v-dp~~Ll~aI~k-Gk~Ael~~~~~ 77 (143)
...|++.|...+ | |.|......+.++|.|.. .-+++.+.+++ |.++..+.+..
T Consensus 139 ~~~v~~~l~~~~~~~~v~iA~~Nsp~~~VisG~~~al~~~~~~l~~~g~~~~~L~v~~ 196 (336)
T 3ptw_A 139 PEQVDEIIEKSSPYGIVEGANYNSPGQIVISGELVALEKAMEFIKEVGGRAIKLPVSA 196 (336)
T ss_dssp HHHHHHHHHHHGGGSCEEEEEEEETTEEEEEEEHHHHHHHHHHHHHTTCEEEECSCSS
T ss_pred HHHHHHHHHhcccCCeEEEEEEecCCcEEEEcCHHHHHHHHHHHHhcCCcEEECCCCC
Confidence 566777776653 3 676666677899999975 56788888888 98888877743
No 122
>1qd1_A Formiminotransferase-cyclodeaminase; functional dimer, alpha-beta-BETA-alpha sandwich, electrosta charged substrate tunnel; HET: FON; 1.70A {Sus scrofa} SCOP: d.58.34.1 d.58.34.1
Probab=39.66 E-value=97 Score=26.02 Aligned_cols=64 Identities=9% Similarity=0.128 Sum_probs=44.9
Q ss_pred EEEEE-eecChhhHHHHHHHHhccCCe---eEEEeCCCCEEEEEeecCHHHHHHHHhc--CCceEEeecC
Q 048021 13 CGLKV-DTNDPAWFSSMTKVLRKIKGA---SYTIDAEEGMAYITGRANPRKLLRKLQS--GKYANLCWVS 76 (143)
Q Consensus 13 vvlkV-~m~C~gC~~kIkkaL~kI~GV---sV~VDle~~~VtV~G~vdp~~Ll~aI~k--Gk~Ael~~~~ 76 (143)
|+..+ ++.-..=..+|.+++++.+|| ++.-|.+-++..++=..+|+.|.+++-. +...+++-..
T Consensus 6 CvpNfSEGR~~~vIe~I~~a~~~~~gv~LLd~~~D~~~NRsv~T~vg~pe~v~eaa~~~~~~A~elIDm~ 75 (325)
T 1qd1_A 6 CVPNFSEGKNQEVIDAISRAVAQTPGCVLLDVDSGPSTNRTVYTFVGRPEDVVEGALNAARAAYQLIDMS 75 (325)
T ss_dssp ECCEESCSSCHHHHHHHHHHHHTSTTCEEEEEEEETTTTEEEEEEEECHHHHHHHHHHHHHHHHHHCCGG
T ss_pred EeeeecccCCHHHHHHHHHHHhcCCCcEEEeCCCCCCCCCceEEEccChHHHHHHHHHHHHHHHHhcccc
Confidence 44444 244555668899999999997 5777888888777755668888888766 5445555543
No 123
>3f0i_A Arsenate reductase; structural genomics, IDP01300, vibrio CH center for structural genomics of infectious diseases, CSGI oxidoreductase; HET: MSE; 1.88A {Vibrio cholerae}
Probab=39.66 E-value=14 Score=25.76 Aligned_cols=51 Identities=18% Similarity=0.129 Sum_probs=33.6
Q ss_pred eEEEEEEeecChhhHHHHHHHHhccCCee-EEEeCCCCEEEEEeecCHHHHHHHHhc-CCc
Q 048021 11 MTCGLKVDTNDPAWFSSMTKVLRKIKGAS-YTIDAEEGMAYITGRANPRKLLRKLQS-GKY 69 (143)
Q Consensus 11 ~tvvlkV~m~C~gC~~kIkkaL~kI~GVs-V~VDle~~~VtV~G~vdp~~Ll~aI~k-Gk~ 69 (143)
|.++|=-.-.|..|. ++++.|.. .||. -.+|..+ ...+.++|.+.+++ |..
T Consensus 4 M~i~iY~~p~C~~c~-ka~~~L~~-~gi~~~~~di~~------~~~t~~eL~~~l~~~g~~ 56 (119)
T 3f0i_A 4 MSVVIYHNPKCSKSR-ETLALLEN-QGIAPQVIKYLE------TSPSVEELKRLYQQLGLN 56 (119)
T ss_dssp TCCEEECCTTCHHHH-HHHHHHHH-TTCCCEEECHHH------HCCCHHHHHHHHHHHTCS
T ss_pred cEEEEEECCCChHHH-HHHHHHHH-cCCceEEEEecc------CcCcHHHHHHHHHHcCCc
Confidence 444443345899998 45566766 6884 3344432 23688999999999 876
No 124
>1aba_A Glutaredoxin; electron transport; HET: MES; 1.45A {Enterobacteria phage T4} SCOP: c.47.1.1 PDB: 1aaz_A 1de1_A 1de2_A
Probab=39.56 E-value=68 Score=19.99 Aligned_cols=44 Identities=16% Similarity=0.106 Sum_probs=24.6
Q ss_pred cChhhHHHHHHHHhccCCee-EEEeCCCCEEEEEeecCHHHHHHHHhc-CCc
Q 048021 20 NDPAWFSSMTKVLRKIKGAS-YTIDAEEGMAYITGRANPRKLLRKLQS-GKY 69 (143)
Q Consensus 20 ~C~gC~~kIkkaL~kI~GVs-V~VDle~~~VtV~G~vdp~~Ll~aI~k-Gk~ 69 (143)
.|+.|. ++++.|.+ .||. -.+|++... |..+++...+..+. |..
T Consensus 13 ~Cp~C~-~ak~~L~~-~gi~y~~idI~~~~----~~~~~~~~~~l~~~~g~~ 58 (87)
T 1aba_A 13 KCGPCD-NAKRLLTV-KKQPFEFINIMPEK----GVFDDEKIAELLTKLGRD 58 (87)
T ss_dssp CCHHHH-HHHHHHHH-TTCCEEEEESCSBT----TBCCHHHHHHHHHHHTCS
T ss_pred cCccHH-HHHHHHHH-cCCCEEEEEeeccc----cccCHHHHHHHHHHhCCC
Confidence 899998 57777877 5773 444544211 22354443333334 776
No 125
>1ttz_A Conserved hypothetical protein; structural genomics, unknown function, PSI, protein structure initiative; 2.11A {Xanthomonas campestris} SCOP: c.47.1.1 PDB: 1xpv_A
Probab=39.28 E-value=77 Score=20.50 Aligned_cols=17 Identities=6% Similarity=-0.021 Sum_probs=12.3
Q ss_pred ecChhhHHHHHHHHhccC
Q 048021 19 TNDPAWFSSMTKVLRKIK 36 (143)
Q Consensus 19 m~C~gC~~kIkkaL~kI~ 36 (143)
-.|+-|. .++..|.++.
T Consensus 9 ~~C~~C~-~~~~~L~~~~ 25 (87)
T 1ttz_A 9 DDCHLCD-QAVEALAQAR 25 (87)
T ss_dssp SSCHHHH-HHHHHHHHTT
T ss_pred CCCchHH-HHHHHHHHHH
Confidence 4799998 6667777653
No 126
>3rdw_A Putative arsenate reductase; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; 2.20A {Yersinia pestis}
Probab=39.14 E-value=37 Score=23.58 Aligned_cols=45 Identities=18% Similarity=0.087 Sum_probs=32.0
Q ss_pred eecChhhHHHHHHHHhccCCee-EEEeCCCCEEEEEeecCHHHHHHHHhc-CC-ce
Q 048021 18 DTNDPAWFSSMTKVLRKIKGAS-YTIDAEEGMAYITGRANPRKLLRKLQS-GK-YA 70 (143)
Q Consensus 18 ~m~C~gC~~kIkkaL~kI~GVs-V~VDle~~~VtV~G~vdp~~Ll~aI~k-Gk-~A 70 (143)
.-.|..|. ++++.|.. .||. -.+|..+. ..+.++|.+.+++ |. .+
T Consensus 12 ~p~C~~c~-ka~~~L~~-~gi~~~~~di~~~------~~~~~eL~~~l~~~g~~~~ 59 (121)
T 3rdw_A 12 NPRCSKSR-ETLALVEQ-QGITPQVVLYLET------PPSVDKLKELLQQLGFSDA 59 (121)
T ss_dssp CTTCHHHH-HHHHHHHT-TTCCCEEECTTTS------CCCHHHHHHHHHHTTCSSG
T ss_pred CCCCHHHH-HHHHHHHH-cCCCcEEEeeccC------CCcHHHHHHHHHhcCCcCH
Confidence 34899998 45566765 6884 45666552 3678899999999 97 54
No 127
>1jdq_A TM006 protein, hypothetical protein TM0983; structural genomics; NMR {Thermotoga maritima} SCOP: d.68.3.3
Probab=39.12 E-value=88 Score=21.16 Aligned_cols=48 Identities=8% Similarity=-0.011 Sum_probs=34.3
Q ss_pred ecChhhHHHHHHHHhccCCeeEEEeCCCCEEEEEee--cCHHHHHHHHhc-CCceEEee
Q 048021 19 TNDPAWFSSMTKVLRKIKGASYTIDAEEGMAYITGR--ANPRKLLRKLQS-GKYANLCW 74 (143)
Q Consensus 19 m~C~gC~~kIkkaL~kI~GVsV~VDle~~~VtV~G~--vdp~~Ll~aI~k-Gk~Ael~~ 74 (143)
+.|+.=.-+++++|++++ ....+.|..+ .....|.+.+++ |+.+....
T Consensus 34 l~CP~Pvl~tkkaL~~l~--------~Ge~L~Vl~dd~~a~~dI~~~~~~~G~~v~~~e 84 (98)
T 1jdq_A 34 EVCPVPDVETKRALQNMK--------PGEILEVWIDYPMSKERIPETVKKLGHEVLEIE 84 (98)
T ss_dssp CCSSHHHHHHHHHHHTCC--------TTCEEEEEESSCTHHHHHHHHHHHSSCCEEEEE
T ss_pred CCCCHHHHHHHHHHHhCC--------CCCEEEEEECCccHHHHHHHHHHHCCCEEEEEE
Confidence 489999999999999984 2234444432 345778888888 99876544
No 128
>4amm_A DYNE8; transferase; 1.40A {Micromonospora chersina} PDB: 4amn_A 4amp_A 4amo_A
Probab=39.11 E-value=60 Score=26.99 Aligned_cols=53 Identities=17% Similarity=0.166 Sum_probs=41.2
Q ss_pred hHHHHHHHHhccCCeeEEEeCCCCEEEEEeec-CHHHHHHHHhc-CCceEEeecCC
Q 048021 24 WFSSMTKVLRKIKGASYTIDAEEGMAYITGRA-NPRKLLRKLQS-GKYANLCWVSA 77 (143)
Q Consensus 24 C~~kIkkaL~kI~GVsV~VDle~~~VtV~G~v-dp~~Ll~aI~k-Gk~Ael~~~~~ 77 (143)
-...|++.|.. .+|.|......+.++|.|.. .-++|.+.+++ |..+..+.+..
T Consensus 221 ~~~~v~~~l~~-~~v~iA~~Nsp~~~vvsG~~~al~~~~~~l~~~g~~~~~L~v~~ 275 (401)
T 4amm_A 221 DLAAARELAAG-TGAVVAVDNGERHVVVAGTRPELDRVAEAARHAGIEATPLAVSH 275 (401)
T ss_dssp CHHHHHHHHTT-TSCEEEEEEETTEEEEEEEHHHHHHHHHHHHHHTCCEEEBSCSS
T ss_pred CHHHHHHHhcc-CCEEEEEEecCCCEEEECCHHHHHHHHHHHHhCCCeEEECCCCC
Confidence 46678887765 45777776777889999975 57788888888 99998888753
No 129
>3h5j_A 3-isopropylmalate dehydratase small subunit; leucine biosynthesis, isopropylmalate isomerase, LEUD, amino-acid biosynthesis; 1.20A {Mycobacterium tuberculosis} PDB: 3h5h_A 3h5e_A
Probab=38.13 E-value=29 Score=26.59 Aligned_cols=31 Identities=10% Similarity=0.097 Sum_probs=23.3
Q ss_pred hhHHHHHHHHhccCCeeEEEeCCCCEEEEEe
Q 048021 23 AWFSSMTKVLRKIKGASYTIDAEEGMAYITG 53 (143)
Q Consensus 23 gC~~kIkkaL~kI~GVsV~VDle~~~VtV~G 53 (143)
....+|.+.+..-+|..++||+++++|+..|
T Consensus 121 ~~~~~l~~~~~~~~g~~i~VDl~~~~i~~~g 151 (171)
T 3h5j_A 121 DDVELLWKLIEQSPGLEITANLQDRIITAAT 151 (171)
T ss_dssp HHHHHHHHHHHHSTTCEEEEETTTTEEEETT
T ss_pred HHHHHHHHHhhcCCCcEEEEECCCCEEEECC
Confidence 3445566666656788999999999998765
No 130
>2y3m_A Emhofq, protein transport protein HOFQ; secretin, DNA uptake, competence; 2.30A {Aggregatibacter actinomycetemcomitans}
Probab=37.86 E-value=56 Score=23.57 Aligned_cols=42 Identities=19% Similarity=0.283 Sum_probs=28.1
Q ss_pred HHHHHHHHh----ccCC--eeEEEeCCCCEEEEEeecC-HHHHHHHHhc
Q 048021 25 FSSMTKVLR----KIKG--ASYTIDAEEGMAYITGRAN-PRKLLRKLQS 66 (143)
Q Consensus 25 ~~kIkkaL~----kI~G--VsV~VDle~~~VtV~G~vd-p~~Ll~aI~k 66 (143)
+..+.+.|+ .+-+ .+|.+|...+.+.|+|..+ -++|.+.|++
T Consensus 117 a~~~~~~l~~~~~~l~~~~g~v~~d~~tN~liv~~~~~~i~~i~~li~~ 165 (175)
T 2y3m_A 117 ASEVMKSLTGGSGSLLSPNGSITFDDRSNLLLIQDEPRSVRNIKKLIKE 165 (175)
T ss_dssp HHHHHHHHHCSSSCSSCTTCEEEEETTTTEEEEEECHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhCcccccCCCceEEEECCCCEEEEEcCHHHHHHHHHHHHH
Confidence 456677776 4422 2699999999999999753 3444444444
No 131
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=37.68 E-value=81 Score=28.28 Aligned_cols=60 Identities=17% Similarity=0.177 Sum_probs=42.9
Q ss_pred EEEEEEeecChhhHHHHHHHHhccCC----eeEEEeCCCCEEEEEe--ecCHHHHHHHHhc--CCceE
Q 048021 12 TCGLKVDTNDPAWFSSMTKVLRKIKG----ASYTIDAEEGMAYITG--RANPRKLLRKLQS--GKYAN 71 (143)
Q Consensus 12 tvvlkV~m~C~gC~~kIkkaL~kI~G----VsV~VDle~~~VtV~G--~vdp~~Ll~aI~k--Gk~Ae 71 (143)
.+.+.|.-.-.+=..++.++|++|.- +.|..|.+.+...|.| .+--+.++++|++ |..++
T Consensus 415 v~~~ai~p~~~~d~~kl~~~L~~L~~eDp~l~v~~~~etge~il~g~GelhLei~~~rL~~~f~v~v~ 482 (704)
T 2rdo_7 415 VISIAVEPKTKADQEKMGLALGRLAKEDPSFRVWTDEESNQTIIAGMGELHLDIIVDRMKREFNVEAN 482 (704)
T ss_pred eEEEEEEECChHHHHHHHHHHHHHHhhCCEEEEEEcCCCCcEEEEeCCHHHHHHHHHHHHHHhCceEE
Confidence 34445554445558889999888732 3578888899999985 5678899999988 54444
No 132
>3q3w_A 3-isopropylmalate dehydratase small subunit; structural genomics, center for structural genomics of infec diseases, csgid, isomerase; HET: MSE; 1.89A {Campylobacter jejuni}
Probab=37.60 E-value=29 Score=27.27 Aligned_cols=48 Identities=13% Similarity=0.061 Sum_probs=29.6
Q ss_pred hHHHHHHHHhccCCeeEEEeCCCCEEEEEee---cCHHHH-HHHHhcCCceE
Q 048021 24 WFSSMTKVLRKIKGASYTIDAEEGMAYITGR---ANPRKL-LRKLQSGKYAN 71 (143)
Q Consensus 24 C~~kIkkaL~kI~GVsV~VDle~~~VtV~G~---vdp~~L-l~aI~kGk~Ae 71 (143)
...+|.+.+.+-+|..++||+++++|+..|. .+-+.. ++.|..|.+..
T Consensus 130 ~~~~l~~~~~~~~g~~i~VDL~~~~i~~~g~~~~f~i~~~~r~~Ll~GlD~i 181 (203)
T 3q3w_A 130 EVLEIVDELKKSQDKNIEISLLEKRVFFKDKIFSFDLDDFHRICLLEGLDNI 181 (203)
T ss_dssp HHHHHHHHHHHCSCCEEEEETTTTEEEETTEEEECCCCHHHHHHHHHTCCCC
T ss_pred HHHHHHHHhhcCCCCEEEEECCCCEEEECCEEEEEEeCHHHHHHHHcCcCHH
Confidence 3445555555567889999999999987653 232333 33333366543
No 133
>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11
Probab=37.51 E-value=99 Score=21.27 Aligned_cols=60 Identities=20% Similarity=0.253 Sum_probs=41.0
Q ss_pred ceEEEEEEee-cChhhHHHHHHHHhccCCee---EEEe-CCC-CEEEEEeecCHHHHHHHHhc-CCceE
Q 048021 10 KMTCGLKVDT-NDPAWFSSMTKVLRKIKGAS---YTID-AEE-GMAYITGRANPRKLLRKLQS-GKYAN 71 (143)
Q Consensus 10 ~~tvvlkV~m-~C~gC~~kIkkaL~kI~GVs---V~VD-le~-~~VtV~G~vdp~~Ll~aI~k-Gk~Ae 71 (143)
.+.-.|.|.+ .-.|-..+|.++|.+ .|++ +.+. ..+ +.+.+. ..|++++.+.|++ |+.+.
T Consensus 4 m~~~~i~v~v~d~~G~l~~i~~~la~-~~inI~~i~~~~~~~~~~~~~~-~~d~~~a~~~L~~~G~~v~ 70 (144)
T 2f06_A 4 MVAKQLSIFLENKSGRLTEVTEVLAK-ENINLSALCIAENADFGILRGI-VSDPDKAYKALKDNHFAVN 70 (144)
T ss_dssp SEEEEEEEEECSSSSHHHHHHHHHHH-TTCCEEEEEEEECSSCEEEEEE-ESCHHHHHHHHHHTTCCEE
T ss_pred cEEEEEEEEecCCCcHHHHHHHHHHH-CCCCEEEEEEEecCCCCEEEEE-eCCHHHHHHHHHHcCCeEe
Confidence 3455566655 458889999999977 5663 4443 223 334555 5699999999999 98873
No 134
>3fz4_A Putative arsenate reductase; APC61768, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.38A {Streptococcus mutans UA159} SCOP: c.47.1.0
Probab=37.15 E-value=48 Score=22.98 Aligned_cols=46 Identities=11% Similarity=-0.004 Sum_probs=32.3
Q ss_pred eecChhhHHHHHHHHhccCCee-EEEeCCCCEEEEEeecCHHHHHHHHhc-CCceE
Q 048021 18 DTNDPAWFSSMTKVLRKIKGAS-YTIDAEEGMAYITGRANPRKLLRKLQS-GKYAN 71 (143)
Q Consensus 18 ~m~C~gC~~kIkkaL~kI~GVs-V~VDle~~~VtV~G~vdp~~Ll~aI~k-Gk~Ae 71 (143)
.-.|+.|.+ .++.|.. .||. -.+|..+. ..+.++|.+.+++ |..++
T Consensus 10 ~~~C~~c~k-a~~~L~~-~gi~~~~~di~~~------~~~~~eL~~~l~~~g~~~~ 57 (120)
T 3fz4_A 10 YPKCSTCRR-AKAELDD-LAWDYDAIDIKKN------PPAASLIRNWLENSGLELK 57 (120)
T ss_dssp CSSCHHHHH-HHHHHHH-HTCCEEEEETTTS------CCCHHHHHHHHHHSCCCGG
T ss_pred CCCChHHHH-HHHHHHH-cCCceEEEEeccC------chhHHHHHHHHHHcCCCHH
Confidence 458999984 4555665 6885 45666653 3678899999998 86543
No 135
>3gr5_A ESCC; secretin, type III secretion system, outer membrane, transport, membrane protein; 2.05A {Escherichia coli}
Probab=37.03 E-value=70 Score=23.35 Aligned_cols=47 Identities=13% Similarity=-0.047 Sum_probs=37.2
Q ss_pred hHHHHHHHHhccCCeeEEEeCC-CCEEEEEe-ecCHHHHHHHHhc--CCce
Q 048021 24 WFSSMTKVLRKIKGASYTIDAE-EGMAYITG-RANPRKLLRKLQS--GKYA 70 (143)
Q Consensus 24 C~~kIkkaL~kI~GVsV~VDle-~~~VtV~G-~vdp~~Ll~aI~k--Gk~A 70 (143)
=.+.|-++|...-|+.+.++.+ +|+|++.= .++|+++++.|.+ |...
T Consensus 24 ~v~~vL~~lA~~~g~nivvs~~V~G~vs~rl~~~~~~q~L~~l~~~~gL~~ 74 (156)
T 3gr5_A 24 PVRAILNDFAANYSIPVFISSSVNDDFSGEIKNEKPVKVLEKLSKLYHLTW 74 (156)
T ss_dssp EHHHHHHHHHHHTTCCEEECTTCCCEEEEEEEEECHHHHHHHHHHHHTEEE
T ss_pred CHHHHHHHHHHhhCCCEEECCCcceEEEEEecCCCHHHHHHHHHHHCCceE
Confidence 3567777888888998777764 89998884 4799999999988 7654
No 136
>1nkw_F 50S ribosomal protein L9; ribosome, large subunit, X- RAY structure, peptidyl-transferase, peptide bond formation; 3.10A {Deinococcus radiodurans} SCOP: i.1.1.2 PDB: 1nwx_F* 1nwy_F* 1sm1_F* 1xbp_F* 1pnu_F 1pny_F 1vor_I 1vou_I 1vow_I 1voy_I 1vp0_I
Probab=36.88 E-value=37 Score=25.05 Aligned_cols=44 Identities=14% Similarity=0.257 Sum_probs=29.6
Q ss_pred hccCCeeEEEeCCCCEEEEEeecCHHHHHHHHhc-CCceEEeecC
Q 048021 33 RKIKGASYTIDAEEGMAYITGRANPRKLLRKLQS-GKYANLCWVS 76 (143)
Q Consensus 33 ~kI~GVsV~VDle~~~VtV~G~vdp~~Ll~aI~k-Gk~Ael~~~~ 76 (143)
.+|+++.++|..+.+.=.+-|.+.+..|.++|.+ |..+.-..+.
T Consensus 69 ~~L~~~~v~i~~k~g~gklfGSVt~~dIa~al~~~g~~idk~~I~ 113 (146)
T 1nkw_F 69 SRLNGVAVELSVRAGEGKIYGAVTHQDVANSLDQLGFDVDRRKID 113 (146)
T ss_pred HHhcCCEEEEEEEcCCCceeeccCHHHHHHHHHHcCCeechheEE
Confidence 3456665555554332234689999999999998 9887644443
No 137
>1nho_A Probable thioredoxin; beta sheet, alpha helix, oxidoreductase; NMR {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.47.1.1
Probab=36.48 E-value=25 Score=21.00 Aligned_cols=28 Identities=11% Similarity=0.040 Sum_probs=14.6
Q ss_pred ecChhhHHHH---HHHHhccC-Cee-EEEeCCC
Q 048021 19 TNDPAWFSSM---TKVLRKIK-GAS-YTIDAEE 46 (143)
Q Consensus 19 m~C~gC~~kI---kkaL~kI~-GVs-V~VDle~ 46 (143)
-.|+.|.+-. +++.++.+ ++. +.+|.++
T Consensus 11 ~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~ 43 (85)
T 1nho_A 11 PTCPYCPMAIEVVDEAKKEFGDKIDVEKIDIMV 43 (85)
T ss_dssp SSSCCSTTHHHHHHHHHHHHCSSCCEEEECTTT
T ss_pred CCCcchHHHHHHHHHHHHHhcCCeEEEEEECCC
Confidence 4688886433 33333344 353 5666653
No 138
>2wj5_A Heat shock protein beta-6; chaperone, disulfide bond, stress response; 1.12A {Rattus norvegicus}
Probab=36.15 E-value=21 Score=24.10 Aligned_cols=22 Identities=9% Similarity=0.131 Sum_probs=18.1
Q ss_pred ccCCe---eEEEeCCCCEEEEEeec
Q 048021 34 KIKGA---SYTIDAEEGMAYITGRA 55 (143)
Q Consensus 34 kI~GV---sV~VDle~~~VtV~G~v 55 (143)
.++|+ +++|.++++.++|+|..
T Consensus 18 dlPG~~~edI~V~v~~~~L~I~g~~ 42 (101)
T 2wj5_A 18 DVKHFSPEEISVKVVGDHVEVHARH 42 (101)
T ss_dssp ECTTSCGGGEEEEEETTEEEEEEEE
T ss_pred ECCCCcHHHeEEEEECCEEEEEEEE
Confidence 46787 38888889999999975
No 139
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=36.10 E-value=78 Score=20.03 Aligned_cols=65 Identities=9% Similarity=0.076 Sum_probs=37.4
Q ss_pred EEEEEE-eecChhhHHHHHHHHhccCCe-eEEEeCC------CCEEEEEeecCHHHHHHHHh---c----CCceEEeecC
Q 048021 12 TCGLKV-DTNDPAWFSSMTKVLRKIKGA-SYTIDAE------EGMAYITGRANPRKLLRKLQ---S----GKYANLCWVS 76 (143)
Q Consensus 12 tvvlkV-~m~C~gC~~kIkkaL~kI~GV-sV~VDle------~~~VtV~G~vdp~~Ll~aI~---k----Gk~Ael~~~~ 76 (143)
..+|-| ++.-.-....|++.+.+.-.| +|.+-.+ .+-..|+= .+++...+||+ . |+...+....
T Consensus 12 ~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f-~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 90 (102)
T 2cqb_A 12 KRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEF-ELAEDAAAAIDNMNESELFGRTIRVNLAK 90 (102)
T ss_dssp CSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECC-SSHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEE-CCHHHHHHHHHHhCCCEECCcEEEEEeCC
Confidence 344445 566666788999999987667 6766333 23444441 24444445553 2 6666655554
Q ss_pred C
Q 048021 77 A 77 (143)
Q Consensus 77 ~ 77 (143)
+
T Consensus 91 ~ 91 (102)
T 2cqb_A 91 P 91 (102)
T ss_dssp C
T ss_pred C
Confidence 3
No 140
>3gla_A Low molecular weight heat shock protein; HSPA, SHP, SHSP, high resolution, stress response, chaperone; 1.64A {Xanthomonas axonopodis PV} PDB: 3gt6_A 3guf_A
Probab=36.08 E-value=16 Score=24.13 Aligned_cols=23 Identities=17% Similarity=0.466 Sum_probs=18.5
Q ss_pred ccCCe---eEEEeCCCCEEEEEeecC
Q 048021 34 KIKGA---SYTIDAEEGMAYITGRAN 56 (143)
Q Consensus 34 kI~GV---sV~VDle~~~VtV~G~vd 56 (143)
.|+|+ +++|..+++.++|+|...
T Consensus 21 ~lPG~~~edi~v~~~~~~L~I~g~~~ 46 (100)
T 3gla_A 21 DLPGIDPSQIEVQMDKGILSIRGERK 46 (100)
T ss_dssp ECTTSCGGGCEEEEETTEEEEEEEEC
T ss_pred ECCCCCHHHEEEEEECCEEEEEEEEc
Confidence 56788 388888899999999753
No 141
>3pro_C Alpha-lytic protease; Pro region, foldase, protein folding, serine protease, hydro hydrolase inhibitor complex; HET: AES; 1.80A {Lysobacter enzymogenes} SCOP: d.52.1.1 d.52.1.1 PDB: 2pro_A* 4pro_C
Probab=36.04 E-value=42 Score=25.33 Aligned_cols=40 Identities=10% Similarity=0.092 Sum_probs=24.8
Q ss_pred CCe-eEEEeCCCCEEEEEee-cCHHHHHHHHhc-CCc---eEEeec
Q 048021 36 KGA-SYTIDAEEGMAYITGR-ANPRKLLRKLQS-GKY---ANLCWV 75 (143)
Q Consensus 36 ~GV-sV~VDle~~~VtV~G~-vdp~~Ll~aI~k-Gk~---Ael~~~ 75 (143)
+|| ++-||+..++|+|+.. ..+....+.+++ |-. +++...
T Consensus 114 ~~v~~W~VD~~tN~VVV~a~~~~~~aa~~f~~~AG~~~~av~V~~s 159 (166)
T 3pro_C 114 DGVQSWYVDPRSNAVVVKVDDGATDAGVDFVALSGADSAQVRIESS 159 (166)
T ss_dssp TTEEEEEEEGGGTEEEEEEETTCHHHHHHHHHHHTCCTTTEEEEEE
T ss_pred CCCceEEEeCCCCeEEEEeCCCChHHHHHHHHHhCCCCCceEEEEc
Confidence 467 6999999999999975 233443333333 533 455433
No 142
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=35.82 E-value=84 Score=19.96 Aligned_cols=66 Identities=15% Similarity=0.180 Sum_probs=39.7
Q ss_pred EEEEEE-eecChhhHHHHHHHHhccCCe-eEEEeCCC----CEEEEEeecCHHHHHHHHh---c----CCceEEeecCCC
Q 048021 12 TCGLKV-DTNDPAWFSSMTKVLRKIKGA-SYTIDAEE----GMAYITGRANPRKLLRKLQ---S----GKYANLCWVSAG 78 (143)
Q Consensus 12 tvvlkV-~m~C~gC~~kIkkaL~kI~GV-sV~VDle~----~~VtV~G~vdp~~Ll~aI~---k----Gk~Ael~~~~~~ 78 (143)
..+|-| ++.-.--...|++.+.+.-.| +|.+-.+. +-..|+= .+++...+||+ . |+...+-...+.
T Consensus 15 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f-~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 93 (103)
T 2cqi_A 15 PRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEF-YEHRDAAAALAAMNGRKILGKEVKVNWATTP 93 (103)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCSSCCEEEEEE-SSHHHHHHHHHHHTTEEETTEEEEEEECCCT
T ss_pred CCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCCCCCEEEEEE-CCHHHHHHHHHHhCCCCcCCCeEEEEECCCC
Confidence 455556 566666788999999988777 67775532 3344431 24444444444 3 666666665543
No 143
>3im9_A MCAT, MCT, malonyl COA-acyl carrier protein transacylase; fatty acid synthesis, malonyl-COA: acyl carrier protein TRAN (MCAT), FABD; 1.46A {Staphylococcus aureus}
Probab=35.78 E-value=56 Score=25.96 Aligned_cols=52 Identities=17% Similarity=0.157 Sum_probs=37.2
Q ss_pred HHHHHHHHhccCC----eeEEEeCCCCEEEEEeec-CHHHHHHHHhc-CC-ceEEeecC
Q 048021 25 FSSMTKVLRKIKG----ASYTIDAEEGMAYITGRA-NPRKLLRKLQS-GK-YANLCWVS 76 (143)
Q Consensus 25 ~~kIkkaL~kI~G----VsV~VDle~~~VtV~G~v-dp~~Ll~aI~k-Gk-~Ael~~~~ 76 (143)
...|++.|..++. |.+......+.++|.|.. .-+++.+.+++ |. .+..+.+.
T Consensus 145 ~~~v~~~~~~~~~~~~~v~iA~~Nsp~~~visG~~~~l~~~~~~l~~~g~~~~~~L~v~ 203 (316)
T 3im9_A 145 FDKVDEICKSLSSDDKIIEPANINCPGQIVVSGHKALIDELVEKGKSLGAKRVMPLAVS 203 (316)
T ss_dssp HHHHHHHHHHHCBTTBCEEEEEEEETTEEEEEEEHHHHHHHHHHTTTTTCSEEEECCCS
T ss_pred HHHHHHHHHHhcccCCeEEEEEEcCCCCEEEEcCHHHHHHHHHHHHhCCCceEEECCCC
Confidence 5667777776652 566666667889999975 56777788887 87 67777664
No 144
>1j4w_A FUSE binding protein; single-stranded DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: d.51.1.1 d.51.1.1
Probab=35.64 E-value=89 Score=22.43 Aligned_cols=42 Identities=14% Similarity=0.226 Sum_probs=25.0
Q ss_pred EEEEEEeecChhhH-----HHHHHHHhccCCeeEEEeCCC-----CEEEEEee
Q 048021 12 TCGLKVDTNDPAWF-----SSMTKVLRKIKGASYTIDAEE-----GMAYITGR 54 (143)
Q Consensus 12 tvvlkV~m~C~gC~-----~kIkkaL~kI~GVsV~VDle~-----~~VtV~G~ 54 (143)
++.|.|+-..-|+. ..|++ |++.-|+.|.|+... ..|+|.|.
T Consensus 4 ~~~~~vp~~~vg~iIGkgG~~Ik~-i~~~tg~~I~i~~~~~~~~~r~v~I~G~ 55 (174)
T 1j4w_A 4 MIDVPIPRFAVGIVIGRNGEMIKK-IQNDAGVRIQFKPDDGTTPERIAQITGP 55 (174)
T ss_dssp EEEEEEEHHHHHHHHCGGGHHHHH-HHHHHCCEEEEECCTTSCSEEEEEEEEC
T ss_pred EEEEEEChhheeeeecCCchHHHH-HHHHhCCEEEEecCCCCCCccEEEEEeC
Confidence 45666654332322 44444 455567888887543 47889887
No 145
>3sbm_A DISD protein, DSZD; transferase; HET: P6G; 1.35A {Sorangium cellulosum} PDB: 3rgi_A
Probab=35.58 E-value=53 Score=25.59 Aligned_cols=53 Identities=13% Similarity=0.066 Sum_probs=38.3
Q ss_pred hHHHHHHHHhcc--CCeeEEEeCCCCEEEEEeec-CHHHHHHHHhc--CCceEEeecC
Q 048021 24 WFSSMTKVLRKI--KGASYTIDAEEGMAYITGRA-NPRKLLRKLQS--GKYANLCWVS 76 (143)
Q Consensus 24 C~~kIkkaL~kI--~GVsV~VDle~~~VtV~G~v-dp~~Ll~aI~k--Gk~Ael~~~~ 76 (143)
-...|++.|... ++|.|......+.++|.|.. .-+++.+.+++ |..+..+.+.
T Consensus 130 ~~~~v~~~l~~~~~~~v~iA~~Nsp~~~visG~~~al~~~~~~l~~~~~~~~~~L~v~ 187 (281)
T 3sbm_A 130 DEERVRELLDQNGATAVDIANLNSPSQVVISGAKDEIARLQVPFEAAGAKKYTVLRVS 187 (281)
T ss_dssp CHHHHHHHHHHTTCTTEEEEEEEETTEEEEEECHHHHHHTHHHHHHHTCSEEEECCCS
T ss_pred CHHHHHHHHHHcCCCCEEEEEEcCccCEEEeCCHHHHHHHHHHHHhcCCceEEECCCC
Confidence 346777777765 45777777777889999975 56777778877 6677777764
No 146
>2lqo_A Putative glutaredoxin RV3198.1/MT3292; TRX fold, oxidoreductase; NMR {Mycobacterium tuberculosis}
Probab=35.39 E-value=45 Score=22.11 Aligned_cols=26 Identities=12% Similarity=0.079 Sum_probs=18.8
Q ss_pred eecChhhHHHHHHHHhccCCee-EEEeCC
Q 048021 18 DTNDPAWFSSMTKVLRKIKGAS-YTIDAE 45 (143)
Q Consensus 18 ~m~C~gC~~kIkkaL~kI~GVs-V~VDle 45 (143)
--.|+-|. ++++.|.+ .||. .++|++
T Consensus 11 ~~~Cp~C~-~aK~~L~~-~gi~y~~idi~ 37 (92)
T 2lqo_A 11 TSWCGYCL-RLKTALTA-NRIAYDEVDIE 37 (92)
T ss_dssp CTTCSSHH-HHHHHHHH-TTCCCEEEETT
T ss_pred CCCCHhHH-HHHHHHHh-cCCceEEEEcC
Confidence 34899998 57777877 6884 566665
No 147
>1fo5_A Thioredoxin; disulfide oxidoreductase, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; NMR {Methanocaldococcus jannaschii} SCOP: c.47.1.1
Probab=35.23 E-value=20 Score=21.44 Aligned_cols=29 Identities=14% Similarity=0.138 Sum_probs=16.0
Q ss_pred eecChhhHHH---HHHHHhccC-Cee-EEEeCCC
Q 048021 18 DTNDPAWFSS---MTKVLRKIK-GAS-YTIDAEE 46 (143)
Q Consensus 18 ~m~C~gC~~k---IkkaL~kI~-GVs-V~VDle~ 46 (143)
.-.|+.|.+- ++++.++.+ ++. +.+|.++
T Consensus 11 ~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~ 44 (85)
T 1fo5_A 11 SPMCPHCPAAKRVVEEVANEMPDAVEVEYINVME 44 (85)
T ss_dssp CCCSSCCCTHHHHHHHHHHHCSSSEEEEEEESSS
T ss_pred CCCCCchHHHHHHHHHHHHHcCCceEEEEEECCC
Confidence 3479999643 334334444 453 6666654
No 148
>4fei_A Heat shock protein-related protein; stress response, alpha-crystallin domain fold, aggregates, C chaperone; 2.40A {Deinococcus radiodurans}
Probab=34.54 E-value=18 Score=24.28 Aligned_cols=23 Identities=13% Similarity=0.419 Sum_probs=18.9
Q ss_pred ccCCe---eEEEeCCCCEEEEEeecC
Q 048021 34 KIKGA---SYTIDAEEGMAYITGRAN 56 (143)
Q Consensus 34 kI~GV---sV~VDle~~~VtV~G~vd 56 (143)
.|+|+ +++|..+++.++|+|...
T Consensus 23 ~lPG~~~edi~v~~~~~~L~I~g~~~ 48 (102)
T 4fei_A 23 DVPGVDAGTLALAEDGGQLTVSGERP 48 (102)
T ss_dssp ECTTCCGGGCEEEEETTEEEEEEEEC
T ss_pred ECCCCchHhEEEEEECCEEEEEEEEe
Confidence 57888 388888899999999763
No 149
>1zzo_A RV1677; thioredoxin fold, structural genomics, PSI, protein structure initiative, TB structural genomics consortium, TBSGC; 1.60A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 3ios_A
Probab=34.18 E-value=55 Score=20.89 Aligned_cols=32 Identities=16% Similarity=0.367 Sum_probs=22.3
Q ss_pred cCCe-e-EEEeCCCCEEEEEeecCHHHHHHHHhc
Q 048021 35 IKGA-S-YTIDAEEGMAYITGRANPRKLLRKLQS 66 (143)
Q Consensus 35 I~GV-s-V~VDle~~~VtV~G~vdp~~Ll~aI~k 66 (143)
+.|+ . +-+|.+...+...|..+++.|.+.|++
T Consensus 99 i~~~P~~~~id~~g~i~~~~g~~~~~~l~~~l~~ 132 (136)
T 1zzo_A 99 VTQQPAYAFVDPHGNVDVVRGRMSQDELTRRVTA 132 (136)
T ss_dssp CCSSSEEEEECTTCCEEEEESCCCHHHHHHHHHH
T ss_pred CCCCceEEEECCCCCEEEEecCCCHHHHHHHHHH
Confidence 4556 4 566665555556688899999998875
No 150
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=33.05 E-value=66 Score=19.63 Aligned_cols=14 Identities=7% Similarity=0.199 Sum_probs=6.4
Q ss_pred hHHHHHHHHhccCC
Q 048021 24 WFSSMTKVLRKIKG 37 (143)
Q Consensus 24 C~~kIkkaL~kI~G 37 (143)
-+..+++.|.+..|
T Consensus 29 tV~~LK~~i~~~~~ 42 (81)
T 2dzi_A 29 LVSTLKQLVSEKLN 42 (81)
T ss_dssp BHHHHHHHHHHHTC
T ss_pred cHHHHHHHHHHHHC
Confidence 34444444444444
No 151
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=32.99 E-value=89 Score=19.37 Aligned_cols=65 Identities=9% Similarity=0.150 Sum_probs=36.2
Q ss_pred EEEEE-eecChhhHHHHHHHHhccCCe-eEEEeCCCCEEEEEeecCHHHHHHHHhc----CCceEEeecCC
Q 048021 13 CGLKV-DTNDPAWFSSMTKVLRKIKGA-SYTIDAEEGMAYITGRANPRKLLRKLQS----GKYANLCWVSA 77 (143)
Q Consensus 13 vvlkV-~m~C~gC~~kIkkaL~kI~GV-sV~VDle~~~VtV~G~vdp~~Ll~aI~k----Gk~Ael~~~~~ 77 (143)
.+|-| ++.-.-....|++.+.+.-.| ++.+-..-.-|+.....++++.++.+.. |+...+....+
T Consensus 10 ~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 80 (90)
T 2dnp_A 10 WKIFVGNVSAACTSQELRSLFERRGRVIECDVVKDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELSTK 80 (90)
T ss_dssp CCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECSSCEEEEESCHHHHHHHHHHHTTCEETTEECEEEESCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEECCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEECCC
Confidence 33444 566666788899999988767 6776644223332233344444444433 55555555443
No 152
>3l1e_A Alpha-crystallin A chain; lens transparency, polydispersity, protein aggregation, CRYS eye lens protein, chaperone; 1.15A {Bos taurus} PDB: 3l1f_A 3n3e_A
Probab=32.92 E-value=25 Score=23.94 Aligned_cols=22 Identities=23% Similarity=0.401 Sum_probs=18.2
Q ss_pred ccCCe---eEEEeCCCCEEEEEeec
Q 048021 34 KIKGA---SYTIDAEEGMAYITGRA 55 (143)
Q Consensus 34 kI~GV---sV~VDle~~~VtV~G~v 55 (143)
.++|+ +++|.++++.++|+|..
T Consensus 19 dlPG~~~edi~V~v~~~~L~I~g~~ 43 (106)
T 3l1e_A 19 DVKHFSPEDLTVKVQEDFVEIHGKH 43 (106)
T ss_dssp ECTTSCGGGEEEEEETTEEEEEEEE
T ss_pred ECCCCChHHEEEEEECCEEEEEEEE
Confidence 46888 38999999999999963
No 153
>2ctk_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=32.87 E-value=72 Score=21.68 Aligned_cols=53 Identities=23% Similarity=0.115 Sum_probs=29.4
Q ss_pred ceEEEEEEeecCh-----hhHHHHHHHHhccCCeeEEEeCCC---CEEEEEeecCHHHHHHHHh
Q 048021 10 KMTCGLKVDTNDP-----AWFSSMTKVLRKIKGASYTIDAEE---GMAYITGRANPRKLLRKLQ 65 (143)
Q Consensus 10 ~~tvvlkV~m~C~-----gC~~kIkkaL~kI~GVsV~VDle~---~~VtV~G~vdp~~Ll~aI~ 65 (143)
+.+.+|+|+-..- .--+.|++. ..--|+.+.|+.+. +.|+|.|.- +.+.+|.+
T Consensus 16 p~~~~i~Ip~~~ig~IIG~gG~~Ir~I-~eetg~~I~I~~~g~~~~~V~I~G~~--e~v~~A~~ 76 (104)
T 2ctk_A 16 PVTIEVEVPFDLHRYVIGQKGSGIRKM-MDEFEVNIHVPAPELQSDIIAITGLA--ANLDRAKA 76 (104)
T ss_dssp CEEEEEECCHHHHHHHHCSSSHHHHHH-HHHTCCEEECCCTTTTCCEEEEEECH--HHHHHHHH
T ss_pred CEEEEEEEChHHccceeCCCchHHHHH-HHHHCCEEEecCCCCCcceEEEEcCH--HHHHHHHH
Confidence 4566777763221 222445554 44468877776432 399999962 44554443
No 154
>2jvz_A KH type-splicing, FAR upstream element-binding protein 2; RNA binding protein, KH domain, KSRP, posttranscriptional regulation, mRNA decay; NMR {Homo sapiens}
Probab=32.69 E-value=1.3e+02 Score=21.07 Aligned_cols=51 Identities=12% Similarity=0.253 Sum_probs=30.4
Q ss_pred EEEEEEeecChhhH-----HHHHHHHhccCCeeEEEeCC-------CCEEEEEeecCHHHHHHHHh
Q 048021 12 TCGLKVDTNDPAWF-----SSMTKVLRKIKGASYTIDAE-------EGMAYITGRANPRKLLRKLQ 65 (143)
Q Consensus 12 tvvlkV~m~C~gC~-----~kIkkaL~kI~GVsV~VDle-------~~~VtV~G~vdp~~Ll~aI~ 65 (143)
+..|.|+-..-|+. ..|++ |++.-|+.+.++.+ +..|+|.| +++.+.+|+.
T Consensus 3 ~~~~~Vp~~~~g~iIGk~G~~Ik~-i~~~tg~~I~i~~~~~~~~~~~r~v~I~G--~~~~v~~A~~ 65 (164)
T 2jvz_A 3 VQEIMIPAGKAGLVIGKGGETIKQ-LQERAGVKMILIQDGSQNTNVDKPLRIIG--DPYKVQQACE 65 (164)
T ss_dssp EEEEEECTTCHHHHTCTTTHHHHH-HHHTSCSEEEECCCTTSSSSSCEEEEEEE--CHHHHHHHHH
T ss_pred EEEEEechhheeEEECCChHHHHH-HHHHhCCeEEEecCCCCCCCCceEEEEEc--CHHHHHHHHH
Confidence 45566664444443 44544 66667888888643 24789988 4555555543
No 155
>2d74_B Translation initiation factor 2 beta subunit; protein complex; 2.80A {Pyrococcus furiosus} PDB: 2dcu_B*
Probab=32.64 E-value=41 Score=25.05 Aligned_cols=35 Identities=23% Similarity=0.301 Sum_probs=27.0
Q ss_pred HHHhccCCeeEEEeCCCCEEEEEeecCHHHHHHHHhc
Q 048021 30 KVLRKIKGASYTIDAEEGMAYITGRANPRKLLRKLQS 66 (143)
Q Consensus 30 kaL~kI~GVsV~VDle~~~VtV~G~vdp~~Ll~aI~k 66 (143)
+-|..-=|..-.+| +++++|.|..++.+|.+.|++
T Consensus 65 ky~~~ELGt~g~id--~~rlii~G~~~~~~i~~~L~~ 99 (148)
T 2d74_B 65 KFLLREIATAGTLE--GRRVVLQGRFTPYLIANKLKK 99 (148)
T ss_dssp HHHHHHSCCCEEEE--TTEEEESSCCCHHHHHHHHHH
T ss_pred HHHHHHhCCceeec--CCEEEEEeeeCHHHHHHHHHH
Confidence 33333235656777 899999999999999999987
No 156
>4eld_A MJ16.5-P1, small heat shock protein HSP16.5; chaperone; 2.70A {Methanocaldococcus jannaschii} PDB: 1shs_A
Probab=32.60 E-value=25 Score=25.57 Aligned_cols=24 Identities=13% Similarity=0.163 Sum_probs=19.5
Q ss_pred hccCCe---eEEEeCCCCEEEEEeecC
Q 048021 33 RKIKGA---SYTIDAEEGMAYITGRAN 56 (143)
Q Consensus 33 ~kI~GV---sV~VDle~~~VtV~G~vd 56 (143)
..|+|| +|+|.++++.++|+|+..
T Consensus 72 ~dlPG~~~edi~V~~~~~~L~I~g~~~ 98 (161)
T 4eld_A 72 AWLPGVNKEDIILNAVGDTLEIRAKRS 98 (161)
T ss_dssp EECTTCCGGGEEEEEETTEEEEEEECC
T ss_pred EECCCCChHhEEEEEECCEEEEEEEEc
Confidence 357898 399999999999999753
No 157
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=32.45 E-value=1e+02 Score=20.05 Aligned_cols=59 Identities=12% Similarity=0.092 Sum_probs=35.1
Q ss_pred CCCCceEEEEEE-eecChhhHHHHHHHHhccCCe-eEEEeCC----CCEEEEEeecCHHHHHHHHh
Q 048021 6 SSSAKMTCGLKV-DTNDPAWFSSMTKVLRKIKGA-SYTIDAE----EGMAYITGRANPRKLLRKLQ 65 (143)
Q Consensus 6 ~~s~~~tvvlkV-~m~C~gC~~kIkkaL~kI~GV-sV~VDle----~~~VtV~G~vdp~~Ll~aI~ 65 (143)
+.......+|-| ++.-.-....|++.+.+.-.| ++.+-.+ .+-..|+= .+++...+||+
T Consensus 23 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~kg~afV~f-~~~~~A~~Ai~ 87 (109)
T 2err_A 23 TENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTF-ENSADADRARE 87 (109)
T ss_dssp CSCTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTTBCTTEEEEEC-CCSHHHHHHHH
T ss_pred ccCCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCceEEEEEE-CCHHHHHHHHH
Confidence 334444555666 567677788999999988777 6777544 34455542 13333444444
No 158
>2fi0_A Conserved domain protein; structural genomics,streptococcus pneumoniae, PSI, protein S initiative; 2.10A {Streptococcus pneumoniae} SCOP: a.248.1.1
Probab=32.39 E-value=24 Score=23.05 Aligned_cols=17 Identities=24% Similarity=0.305 Sum_probs=15.5
Q ss_pred cCHHHHHHHHhc-CCceE
Q 048021 55 ANPRKLLRKLQS-GKYAN 71 (143)
Q Consensus 55 vdp~~Ll~aI~k-Gk~Ae 71 (143)
+|+++|+++|.+ ||.+.
T Consensus 61 id~d~l~~~L~~~g~~~~ 78 (81)
T 2fi0_A 61 TPMDKIVRTLEANGYEVI 78 (81)
T ss_dssp CCHHHHHHHHHHTTCEEE
T ss_pred CCHHHHHHHHHHcCCEee
Confidence 799999999999 99775
No 159
>3qat_A Malonyl COA-acyl carrier protein transacylase; seattle structural genomics center for infectious disease, S bartonella, CAT-scratch disease; 1.60A {Bartonella henselae}
Probab=32.22 E-value=1e+02 Score=24.53 Aligned_cols=53 Identities=23% Similarity=0.219 Sum_probs=38.8
Q ss_pred HHHHHHHHhccC--C-eeEEEeCCCCEEEEEeec-CHHHHHHHHhc-CCc-eEEeecCC
Q 048021 25 FSSMTKVLRKIK--G-ASYTIDAEEGMAYITGRA-NPRKLLRKLQS-GKY-ANLCWVSA 77 (143)
Q Consensus 25 ~~kIkkaL~kI~--G-VsV~VDle~~~VtV~G~v-dp~~Ll~aI~k-Gk~-Ael~~~~~ 77 (143)
...|++.|..+. + |.+......+.++|.|.. .-+++++.+++ |.. +..+.+..
T Consensus 146 ~~~~~~~~~~~~~~~~v~iA~~Nsp~~~visG~~~~l~~~~~~l~~~g~~~~~~L~v~~ 204 (318)
T 3qat_A 146 EKDVEEICEIVAEEGLCQIANDNGGGQIVISGEAKAVETAVEVASQKGAKRAVLLPVSA 204 (318)
T ss_dssp HHHHHHHHHHTTTTCCEEEEEEEETTEEEEEEEHHHHHHHHHHHHHTTCSEEEEETTSC
T ss_pred HHHHHHHHHhcCcCCcEEEEEECCCCCEEEeCCHHHHHHHHHHHHhcCCceEEECCCCC
Confidence 567777777653 2 577767777899999975 56778888888 874 88777753
No 160
>2l5l_A Thioredoxin; structural genomics, electron transport, PSI-2, protein STRU initiative; NMR {Bacteroides vulgatus}
Probab=32.01 E-value=49 Score=22.10 Aligned_cols=9 Identities=0% Similarity=-0.544 Sum_probs=6.8
Q ss_pred ecChhhHHH
Q 048021 19 TNDPAWFSS 27 (143)
Q Consensus 19 m~C~gC~~k 27 (143)
-.|+.|.+-
T Consensus 48 ~wC~~C~~~ 56 (136)
T 2l5l_A 48 DWCGPCKMV 56 (136)
T ss_dssp TTSHHHHHH
T ss_pred CcCHHHHHH
Confidence 479999754
No 161
>1u6t_A SH3 domain-binding glutamic acid-rich-like protein; SH3-binding, glutaredoxin, thioredoxin fold, crystallography, protein binding; HET: CIT; 1.90A {Homo sapiens} PDB: 1wry_A
Probab=31.86 E-value=64 Score=22.94 Aligned_cols=28 Identities=7% Similarity=0.023 Sum_probs=20.8
Q ss_pred EeecChhhH-----HHHHHHHhccCCee-EEEeCC
Q 048021 17 VDTNDPAWF-----SSMTKVLRKIKGAS-YTIDAE 45 (143)
Q Consensus 17 V~m~C~gC~-----~kIkkaL~kI~GVs-V~VDle 45 (143)
.-..|+-|. .++++.|.. .||. -++|+.
T Consensus 6 tt~~c~~c~~kk~c~~aK~lL~~-kgV~feEidI~ 39 (121)
T 1u6t_A 6 IASSSGSTAIKKKQQDVLGFLEA-NKIGFEEKDIA 39 (121)
T ss_dssp ECTTCSCHHHHHHHHHHHHHHHH-TTCCEEEEECT
T ss_pred ecCCCCCccchHHHHHHHHHHHH-CCCceEEEECC
Confidence 345899996 899998877 6884 556665
No 162
>2g2k_A EIF-5, eukaryotic translation initiation factor 5; EIF125 fold; NMR {Homo sapiens}
Probab=31.81 E-value=36 Score=26.04 Aligned_cols=30 Identities=23% Similarity=0.341 Sum_probs=25.8
Q ss_pred CeeEEEeCCCCEEEEEeecCHHHHHHHHhc
Q 048021 37 GASYTIDAEEGMAYITGRANPRKLLRKLQS 66 (143)
Q Consensus 37 GVsV~VDle~~~VtV~G~vdp~~Ll~aI~k 66 (143)
|..-.+|.++++++|.|..++.+|.+.|++
T Consensus 62 Gt~g~id~~~~rliinG~~~~~~i~~~L~~ 91 (170)
T 2g2k_A 62 GAQTQFDVKNDRYIVNGSHEANKLQDMLDG 91 (170)
T ss_dssp TCCCEECTTTCCEEEEBCCCHHHHHHHHHH
T ss_pred CCceeecCCCCEEEEEeeeCHHHHHHHHHH
Confidence 445678888999999999999999999865
No 163
>2v50_A Multidrug resistance protein MEXB; DDM, RND, membrane, detergent, transport, cell membrane, transmembrane, membrane protein; HET: LMT; 3.00A {Pseudomonas aeruginosa PA01}
Probab=31.72 E-value=32 Score=32.08 Aligned_cols=49 Identities=14% Similarity=0.152 Sum_probs=34.8
Q ss_pred HHHHHHHHhccCCe-eEEEeCCCCEEEEEe--------ecCHHHHHHHHhc---CCceEEe
Q 048021 25 FSSMTKVLRKIKGA-SYTIDAEEGMAYITG--------RANPRKLLRKLQS---GKYANLC 73 (143)
Q Consensus 25 ~~kIkkaL~kI~GV-sV~VDle~~~VtV~G--------~vdp~~Ll~aI~k---Gk~Ael~ 73 (143)
.+.|++.|++++|| +|.++..+.++.|.= .+++++|.++|+. |..+.-+
T Consensus 159 ~~~i~~~L~~i~gv~~v~~~g~~~~i~i~id~~kl~~~Gls~~~v~~~l~~~~~~~~~g~~ 219 (1052)
T 2v50_A 159 VSNIQDPLSRTKGVGDFQVFGSQYSMRIWLDPAKLNSYQLTPGDVSSAIQAQNVQISSGQL 219 (1052)
T ss_dssp HHHTHHHHHTSTTEEEEEESSCCEEEEEEECHHHHTTTTCCHHHHHHHHHHHSCCCCCEET
T ss_pred HHHHHHHHhCCCCceEEEecCCcEEEEEEeCHHHHHHcCCCHHHHHHHHHhcCccCCCeEE
Confidence 46799999999999 799885455555552 1467778999986 5444433
No 164
>2y9k_A Protein INVG; protein transport, type III secretion system, outer membrane secretin family, C15 fold; 8.30A {Salmonella enterica subsp}
Probab=31.70 E-value=48 Score=23.42 Aligned_cols=46 Identities=13% Similarity=0.031 Sum_probs=34.9
Q ss_pred HHHHHHHhccCCeeEEEeCC--CCEEEEEee-cCHHHHHHHHhc--CCceE
Q 048021 26 SSMTKVLRKIKGASYTIDAE--EGMAYITGR-ANPRKLLRKLQS--GKYAN 71 (143)
Q Consensus 26 ~kIkkaL~kI~GVsV~VDle--~~~VtV~G~-vdp~~Ll~aI~k--Gk~Ae 71 (143)
+.+-+.|.+.-|..+.++.+ +++|++.=+ .+|+++++.|.+ |....
T Consensus 10 ~~vl~~la~~~~~~ivvs~~~v~g~vsg~l~~~~~~~~l~~l~~~~gl~~~ 60 (137)
T 2y9k_A 10 RTFFDAMALQLKEPVIVSKMAARKKITGNFEFHDPNALLEKLSLQLGLIWY 60 (137)
T ss_dssp HHHHHHHHHHTTCCEEECHHHHCSEEEEEECSCCHHHHHHHHHHHHTEEEE
T ss_pred HHHHHHHHHhcCCCEEECchhccceEEEEEcCCCHHHHHHHHHHHcCeEEE
Confidence 45566677777887778775 888887744 589999999988 87654
No 165
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=31.70 E-value=1.1e+02 Score=19.88 Aligned_cols=65 Identities=11% Similarity=0.162 Sum_probs=39.4
Q ss_pred EEEEEE-eecChhhHHHHHHHHhccCCe-eEEEeCC--CCE----EEEEeecCHHHHHHHHhc-------CCceEEeecC
Q 048021 12 TCGLKV-DTNDPAWFSSMTKVLRKIKGA-SYTIDAE--EGM----AYITGRANPRKLLRKLQS-------GKYANLCWVS 76 (143)
Q Consensus 12 tvvlkV-~m~C~gC~~kIkkaL~kI~GV-sV~VDle--~~~----VtV~G~vdp~~Ll~aI~k-------Gk~Ael~~~~ 76 (143)
..+|-| ++.-.-....|++.+.+.-.| +|.|-.+ .++ ..|+ =.+++...+||+. |+...+....
T Consensus 15 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~-f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 93 (115)
T 2dgo_A 15 HFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVS-FFNKWDAENAIQQMGGQWLGGRQIRTNWAT 93 (115)
T ss_dssp CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEE-ESSHHHHHHHHHHTTTCEETTEECEEEESS
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEE-ECCHHHHHHHHHHhCCCEECCEEEEEEEcc
Confidence 456666 577777889999999988777 6666443 333 2222 1355666666653 5555555554
Q ss_pred C
Q 048021 77 A 77 (143)
Q Consensus 77 ~ 77 (143)
+
T Consensus 94 ~ 94 (115)
T 2dgo_A 94 R 94 (115)
T ss_dssp C
T ss_pred C
Confidence 3
No 166
>3msz_A Glutaredoxin 1; alpha-beta sandwich, center for structural genomics of infec diseases, csgid, oxidoreductase; HET: GSH; 2.05A {Francisella tularensis subsp} PDB: 3lgc_A*
Probab=31.58 E-value=35 Score=20.78 Aligned_cols=26 Identities=8% Similarity=0.019 Sum_probs=17.6
Q ss_pred eEEEEEEeecChhhHHHHHHHHhccCCe
Q 048021 11 MTCGLKVDTNDPAWFSSMTKVLRKIKGA 38 (143)
Q Consensus 11 ~tvvlkV~m~C~gC~~kIkkaL~kI~GV 38 (143)
|++++=..-.|+.|. +++..|..+ |+
T Consensus 4 m~v~ly~~~~Cp~C~-~~~~~L~~~-~i 29 (89)
T 3msz_A 4 MKVKIYTRNGCPYCV-WAKQWFEEN-NI 29 (89)
T ss_dssp CCEEEEECTTCHHHH-HHHHHHHHT-TC
T ss_pred eEEEEEEcCCChhHH-HHHHHHHHc-CC
Confidence 455554445899998 567778764 56
No 167
>3ha9_A Uncharacterized thioredoxin-like protein; PSI, MCSG, structural G midwest center for structural genomics, protein structure initiative; 1.70A {Aeropyrum pernix}
Probab=31.53 E-value=1e+02 Score=20.75 Aligned_cols=37 Identities=14% Similarity=0.316 Sum_probs=27.0
Q ss_pred HHHHHhccCCe-e-EEEeCCCCEEEEEeec-CHHHHHHHHhc
Q 048021 28 MTKVLRKIKGA-S-YTIDAEEGMAYITGRA-NPRKLLRKLQS 66 (143)
Q Consensus 28 IkkaL~kI~GV-s-V~VDle~~~VtV~G~v-dp~~Ll~aI~k 66 (143)
+.+.+ ++.++ . +-||.+.+.+. .|.. +++.|.+.|++
T Consensus 122 ~~~~~-~v~~~P~~~lid~~G~i~~-~g~~~~~~~l~~~l~~ 161 (165)
T 3ha9_A 122 LVEKF-NVRSIDYIVIMDKSSNVLY-AGTTPSLGELESVIKS 161 (165)
T ss_dssp HHHHT-TCCSSSEEEEEETTCCEEE-EEESCCHHHHHHHHHH
T ss_pred HHHHh-CCCCceEEEEEcCCCcEEE-eCCCCCHHHHHHHHHH
Confidence 34433 45667 4 77787776666 8988 99999999986
No 168
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=31.49 E-value=1.2e+02 Score=21.42 Aligned_cols=53 Identities=9% Similarity=-0.013 Sum_probs=35.8
Q ss_pred EEEEEEe-ecCh-hhHHHHHHHHhccCCe-eEEEeCCCCEEEEEee---cCHHHHHHHH
Q 048021 12 TCGLKVD-TNDP-AWFSSMTKVLRKIKGA-SYTIDAEEGMAYITGR---ANPRKLLRKL 64 (143)
Q Consensus 12 tvvlkV~-m~C~-gC~~kIkkaL~kI~GV-sV~VDle~~~VtV~G~---vdp~~Ll~aI 64 (143)
=|+|+|. +.-. -+...|+.++++...| .|++-....+..|.=. -++.+.++++
T Consensus 18 G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~tgfVrf~~~~~~A~~av~~l 76 (121)
T 1owx_A 18 GCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAKEGIILFKEKAKEALGKAKDA 76 (121)
T ss_dssp CCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCSEEEEEESSCHHHHHHHHHHT
T ss_pred CeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCCEEEEEECCChHHHHHHHHHh
Confidence 4778885 4544 7899999999998778 6888776666555522 2344455554
No 169
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=30.78 E-value=97 Score=19.17 Aligned_cols=61 Identities=8% Similarity=0.050 Sum_probs=37.2
Q ss_pred EEEE-eecChhhHHHHHHHHhccCCe-eEEEeCCCCEEEEEeecCHHHHHHHHh---c----CCceEEeecCC
Q 048021 14 GLKV-DTNDPAWFSSMTKVLRKIKGA-SYTIDAEEGMAYITGRANPRKLLRKLQ---S----GKYANLCWVSA 77 (143)
Q Consensus 14 vlkV-~m~C~gC~~kIkkaL~kI~GV-sV~VDle~~~VtV~G~vdp~~Ll~aI~---k----Gk~Ael~~~~~ 77 (143)
+|-| ++...--...|++.+.+.-.| ++.+- .+-..|+= .+++...+||+ . |+...+-...+
T Consensus 10 ~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--~g~afV~f-~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 79 (90)
T 2dnq_A 10 KLFIGNLPREATEQEIRSLFEQYGKVLECDII--KNYGFVHI-EDKTAAEDAIRNLHHYKLHGVNINVEASKN 79 (90)
T ss_dssp EEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--TTEEEEEE-SSHHHHHHHHHHHTTCBCSSCBCEEECSSC
T ss_pred EEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--CCEEEEEE-CCHHHHHHHHHHhcCCccCCcEEEEEECCC
Confidence 3334 567677788899999998777 67665 55555542 23444444443 2 66666655543
No 170
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=30.74 E-value=1e+02 Score=27.38 Aligned_cols=63 Identities=14% Similarity=0.152 Sum_probs=45.2
Q ss_pred EEEEEEeecChhhHHHHHHHHhccC----CeeEEEeCCCCEEEEEe--ecCHHHHHHHHhc-CCceEEee
Q 048021 12 TCGLKVDTNDPAWFSSMTKVLRKIK----GASYTIDAEEGMAYITG--RANPRKLLRKLQS-GKYANLCW 74 (143)
Q Consensus 12 tvvlkV~m~C~gC~~kIkkaL~kI~----GVsV~VDle~~~VtV~G--~vdp~~Ll~aI~k-Gk~Ael~~ 74 (143)
.+.+.|.-.-.+=..++.++|++|. .+.|..|.+.+...|.| .+--+.++++|++ |.++++-.
T Consensus 382 ~~~~~i~p~~~~d~~kl~~~L~~l~~edp~l~v~~~~et~e~i~~g~Gelhlei~~~rl~~~~v~v~~~~ 451 (665)
T 2dy1_A 382 NVPVALHPKGRTDEARLGEALRKLLEEDPSLKLERQEETGELLLWGHGELHLATAKERLQDYGVEVEFSV 451 (665)
T ss_dssp CEEEEEEESSHHHHHHHHHHHHHHHHHCTTSEEEECTTTCCEEEEESSHHHHHHHHHHHHHTTCCEEEEC
T ss_pred eEEEEEEECChhhHHHHHHHHHHHHHhCCeEEEEEcCCCCCEEEEecCHHHHHHHHHHHHHCCceEEEeC
Confidence 3445555444556888888888872 34688889999999986 5678899999996 66665443
No 171
>4e9j_A General secretion pathway protein D; homodimer, XCPQ, periplasmic domain, structural protein, PER space, outer membrane; 2.03A {Pseudomonas aeruginosa} PDB: 4ec5_A
Probab=30.36 E-value=1.5e+02 Score=22.71 Aligned_cols=54 Identities=13% Similarity=0.195 Sum_probs=37.0
Q ss_pred HHHHHHHHhccC--CeeEEEeCCCCEEEEEeec----CHHHHHHHHhc--CCceEEeecCCC
Q 048021 25 FSSMTKVLRKIK--GASYTIDAEEGMAYITGRA----NPRKLLRKLQS--GKYANLCWVSAG 78 (143)
Q Consensus 25 ~~kIkkaL~kI~--GVsV~VDle~~~VtV~G~v----dp~~Ll~aI~k--Gk~Ael~~~~~~ 78 (143)
++.+.+.|+.+- +..|.+|...+.+.|+|.. ...+|++.|.. ...++++.+...
T Consensus 125 a~~l~~~L~~lls~~g~v~~d~~tN~Liv~g~~~~i~~i~~li~~lD~p~~~~~~vi~l~~a 186 (246)
T 4e9j_A 125 VSELIPLIRPLVPQYGHLAAVPSANALIISDRSANIARIEDVIRQLDQKGSHDYSVINLRYG 186 (246)
T ss_dssp HHHHHHHHGGGSCTTSEEEEEGGGTEEEEEECHHHHHHHHHHHHHHHTCSCCCEEEEECSSS
T ss_pred HHHHHHHHHHhcCCCceEEEcCCCCEEEEEcCHHHHHHHHHHHHHhccccccceEEEEecCC
Confidence 556777777653 2379999999999999964 34555555555 445777777543
No 172
>3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis}
Probab=30.26 E-value=47 Score=28.24 Aligned_cols=60 Identities=10% Similarity=0.037 Sum_probs=42.7
Q ss_pred ceEEEEEEeecChhhHHHHHHHHhccCCeeEEEeCCCCEEEEEe-ecCHHHHHHHHhc--CCceEEeecCCC
Q 048021 10 KMTCGLKVDTNDPAWFSSMTKVLRKIKGASYTIDAEEGMAYITG-RANPRKLLRKLQS--GKYANLCWVSAG 78 (143)
Q Consensus 10 ~~tvvlkV~m~C~gC~~kIkkaL~kI~GVsV~VDle~~~VtV~G-~vdp~~Ll~aI~k--Gk~Ael~~~~~~ 78 (143)
..--.|+|.-.|.-=.+++++.|+.+ ..-.|++.| .++|++|.++|+= |..+.|+....+
T Consensus 335 ~~gr~f~v~~~~p~~~k~lk~~L~~~---------~~~~I~~R~~~~~p~~LRkklkl~~~~~~~l~~T~~~ 397 (410)
T 3ll7_A 335 FPGRTFVLEEIIPFSTSVLKQLRKVV---------PQASISCRNFPLSPIELRQRSKMADGGEKTLMGTTMA 397 (410)
T ss_dssp CSEEEEEEEEEEECCGGGGGGGGGTC---------SCCEEEEESCSSCHHHHHHHHTCCCCSSEEEEEEECT
T ss_pred CCCceEEEEEEecCCHHHHHHHHhhc---------CeEEEEEeCCCCCHHHHHHhcCCCCCCcEEEEEEEec
Confidence 33457888767776677888877743 234677777 6899999999964 777877775443
No 173
>4dx5_A Acriflavine resistance protein B; multidrug efflux protein, membrane protein, transpor; HET: LMT OCT D10 HEX D12 MIY C14 LMU DD9 UND GOL; 1.90A {Escherichia coli} PDB: 2hrt_A* 2gif_A* 4dx7_A* 4dx6_A* 3noc_A* 1oy6_A* 1oy9_A* 1oyd_A* 1oy8_A* 1oye_A 2rdd_A* 2w1b_A* 3d9b_A 2i6w_A* 3nog_A* 1t9x_A* 1t9t_A* 1t9v_A* 1t9w_A* 1t9u_A* ...
Probab=30.24 E-value=55 Score=30.43 Aligned_cols=42 Identities=10% Similarity=0.180 Sum_probs=30.8
Q ss_pred HHHHHHHHhccCCe-eEEEeCCCCEEEEEe--------ecCHHHHHHHHhc
Q 048021 25 FSSMTKVLRKIKGA-SYTIDAEEGMAYITG--------RANPRKLLRKLQS 66 (143)
Q Consensus 25 ~~kIkkaL~kI~GV-sV~VDle~~~VtV~G--------~vdp~~Ll~aI~k 66 (143)
.+.|++.|++++|| +|++...+.++.|.= .+++++|.++|+.
T Consensus 159 ~~~i~~~l~~i~gv~~v~~~g~~~~i~i~~d~~~l~~~glt~~~v~~~l~~ 209 (1057)
T 4dx5_A 159 AANMKDAISRTSGVGDVQLFGSQYAMRIWMNPNELNKFQLTPVDVITAIKA 209 (1057)
T ss_dssp HHHTHHHHHTSTTEEEEEESSCCEEEEEEECHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCceEEEecCCcEEEEEEeCHHHHHHcCCCHHHHHHHHHH
Confidence 36899999999999 798866644555551 1466778888875
No 174
>2joe_A Hypothetical lipoprotein YEHR; six antiparallel beta strands, alpha + beta sandwich, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: d.371.1.1
Probab=30.05 E-value=35 Score=25.03 Aligned_cols=36 Identities=11% Similarity=0.100 Sum_probs=24.6
Q ss_pred HHHHHhccCCeeEEEeCCCCEEEEEee-----cCHHHHHHH
Q 048021 28 MTKVLRKIKGASYTIDAEEGMAYITGR-----ANPRKLLRK 63 (143)
Q Consensus 28 IkkaL~kI~GVsV~VDle~~~VtV~G~-----vdp~~Ll~a 63 (143)
+.+..+.|+||+..++.++++++.+-. +|.++|.++
T Consensus 59 ~~~~yk~ikGvt~kieykD~k~ietv~IDy~k~D~~~lk~~ 99 (139)
T 2joe_A 59 LSAKYKNIAGVEEKLTYTDTYAQENVTIDMEKVDFKALQGI 99 (139)
T ss_dssp HHTTTTTSSSCEEEEEECSSEEEEEEEEETTSCCHHHHTTT
T ss_pred HHHHhCCCCCeEEEEEEeCCEEEEEEEEeccccCHHHHhhc
Confidence 444455678888888888888887743 466665444
No 175
>2wem_A Glutaredoxin-related protein 5; chromosome 14 open reading frame 87, Fe/S cluster, oxidoreductase, thioredoxin family, GLRX5, FLB4739, C14ORF87; HET: GTT; 2.40A {Homo sapiens} PDB: 2wul_A*
Probab=29.98 E-value=1.1e+02 Score=20.93 Aligned_cols=24 Identities=13% Similarity=0.048 Sum_probs=16.9
Q ss_pred cChhhHHHHHHHHhccCCe-e-EEEeCC
Q 048021 20 NDPAWFSSMTKVLRKIKGA-S-YTIDAE 45 (143)
Q Consensus 20 ~C~gC~~kIkkaL~kI~GV-s-V~VDle 45 (143)
.|.-|. ++++.|.+. || + ..+|+.
T Consensus 34 ~Cp~C~-~ak~lL~~~-gv~~~~~vdV~ 59 (118)
T 2wem_A 34 QCGFSN-AVVQILRLH-GVRDYAAYNVL 59 (118)
T ss_dssp SSHHHH-HHHHHHHHT-TCCCCEEEESS
T ss_pred ccHHHH-HHHHHHHHc-CCCCCEEEEcC
Confidence 699998 678888874 66 3 445554
No 176
>3g87_A Malonyl COA-acyl carrier protein transacylase; ssgcid, niaid, decode biostructures, dried seaweed, acyltran transferase; 2.30A {Burkholderia pseudomallei}
Probab=29.85 E-value=46 Score=27.88 Aligned_cols=54 Identities=13% Similarity=-0.014 Sum_probs=38.8
Q ss_pred hHHHHHHHHhcc--CCeeEEEeCCCCEEEEEeec-CHHHHHHHHhc-CCceEEeecCC
Q 048021 24 WFSSMTKVLRKI--KGASYTIDAEEGMAYITGRA-NPRKLLRKLQS-GKYANLCWVSA 77 (143)
Q Consensus 24 C~~kIkkaL~kI--~GVsV~VDle~~~VtV~G~v-dp~~Ll~aI~k-Gk~Ael~~~~~ 77 (143)
-...|++.|... ++|.|......+.++|.|.. .-+++.+.|++ |..+..+.+..
T Consensus 136 ~~~~v~~~l~~~~~~~v~IA~~Nsp~~~ViSG~~~al~~l~~~l~~~g~~~~~L~V~~ 193 (394)
T 3g87_A 136 SREQIERTLDEHGLVDTAIANDNTPSQLVISGPAHEIARAEALFQHDRVRYLRLNTSG 193 (394)
T ss_dssp CHHHHHHHHHHTTCTTCEEEEEEETTEEEEEEEHHHHHHHGGGSCSSSCEEEECSCSS
T ss_pred CHHHHHHHHHhcCCCcEEEEEEcCCCceEecCCHHHHHHHHHHHHhCCCeEEECCCCC
Confidence 356777777765 45677776677889999975 45667777777 88888877753
No 177
>2kgs_A Uncharacterized protein RV0899/MT0922; outer membrane protein A, BON DO cell membrane, membrane, transmembrane, membrane protein; NMR {Mycobacterium tuberculosis} PDB: 2ksm_A
Probab=29.83 E-value=42 Score=23.89 Aligned_cols=30 Identities=13% Similarity=0.154 Sum_probs=23.5
Q ss_pred EEEeCCCCEEEEEeecC----HHHHHHHHhc--CCc
Q 048021 40 YTIDAEEGMAYITGRAN----PRKLLRKLQS--GKY 69 (143)
Q Consensus 40 V~VDle~~~VtV~G~vd----p~~Ll~aI~k--Gk~ 69 (143)
+.|..+++.||++|.++ ...+++++++ |-+
T Consensus 10 i~V~v~~G~VTLsG~Vp~~~~k~aa~~a~~~v~Gv~ 45 (132)
T 2kgs_A 10 LSISRSGNTVTLIGDFPDEAAKAALMTALNGLLAPG 45 (132)
T ss_dssp EEEEECSSEEEEEEEESCHHHHHHHHHHHHTTCCTT
T ss_pred EEEEEECCEEEEEEECCCHHHHHHHHHHHHHhcCCC
Confidence 78888899999999875 5667777776 554
No 178
>2wci_A Glutaredoxin-4; redox-active center, iron-sulfur cluster scaffolder, Fe2S2, homodimer, transport, glutathione, thioredoxin fold; HET: GSH; 1.90A {Escherichia coli} PDB: 1yka_A
Probab=29.80 E-value=85 Score=22.21 Aligned_cols=25 Identities=12% Similarity=-0.027 Sum_probs=17.5
Q ss_pred ecChhhHHHHHHHHhccCCee-EEEeCC
Q 048021 19 TNDPAWFSSMTKVLRKIKGAS-YTIDAE 45 (143)
Q Consensus 19 m~C~gC~~kIkkaL~kI~GVs-V~VDle 45 (143)
-.|+-|. ++++.|..+ ||. ..+|+.
T Consensus 48 ~~Cp~C~-~ak~~L~~~-gv~y~~vdI~ 73 (135)
T 2wci_A 48 PSCGFSA-QAVQALAAC-GERFAYVDIL 73 (135)
T ss_dssp BSSHHHH-HHHHHHHTT-CSCCEEEEGG
T ss_pred CCCccHH-HHHHHHHHc-CCceEEEECC
Confidence 3799998 678888875 773 455554
No 179
>1ego_A Glutaredoxin; electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 1egr_A 1grx_A* 1qfn_A
Probab=29.76 E-value=48 Score=19.99 Aligned_cols=25 Identities=12% Similarity=0.159 Sum_probs=16.2
Q ss_pred ecChhhHHHHHHHHhcc----CCee-EEEeC
Q 048021 19 TNDPAWFSSMTKVLRKI----KGAS-YTIDA 44 (143)
Q Consensus 19 m~C~gC~~kIkkaL~kI----~GVs-V~VDl 44 (143)
-.|+.|. ++++.|.++ +|+. ..+|.
T Consensus 9 ~~C~~C~-~~~~~l~~l~~~~~~i~~~~vdi 38 (85)
T 1ego_A 9 SGCPYCV-RAKDLAEKLSNERDDFQYQYVDI 38 (85)
T ss_dssp TTSTHHH-HHHHHHHHHHHHHSSCEEEEECH
T ss_pred CCCCCHH-HHHHHHHHHHhcCCCceEEEEec
Confidence 3799998 456667764 5663 44554
No 180
>3gv1_A Disulfide interchange protein; neisseria gonorrhoeae (strain 700825 / FA 1090), DSBC, structural genomics, unknown funct 2; 2.00A {Neisseria gonorrhoeae}
Probab=29.66 E-value=82 Score=22.37 Aligned_cols=28 Identities=11% Similarity=0.144 Sum_probs=18.5
Q ss_pred eEEEEEEeecChhhHHHHHHHHhccCCee
Q 048021 11 MTCGLKVDTNDPAWFSSMTKVLRKIKGAS 39 (143)
Q Consensus 11 ~tvvlkV~m~C~gC~~kIkkaL~kI~GVs 39 (143)
.+++.=.+-.|+-|.+- ...|.++..|.
T Consensus 16 ~~vv~f~D~~Cp~C~~~-~~~l~~l~~v~ 43 (147)
T 3gv1_A 16 LKVAVFSDPDCPFCKRL-EHEFEKMTDVT 43 (147)
T ss_dssp EEEEEEECTTCHHHHHH-HHHHTTCCSEE
T ss_pred EEEEEEECCCChhHHHH-HHHHhhcCceE
Confidence 34444457799999954 55677775553
No 181
>3ezo_A Malonyl COA-acyl carrier protein transacylase; ssgcid, acyl-carrier-protein S-malonyltransferase, acyltransferase, transferase; 2.05A {Burkholderia pseudomallei 1710B}
Probab=29.56 E-value=87 Score=24.99 Aligned_cols=53 Identities=17% Similarity=-0.019 Sum_probs=37.3
Q ss_pred HHHHHHHHhccC---CeeEEEeCCCCEEEEEeec-CHHHHHHHHhc-CC-ceEEeecCC
Q 048021 25 FSSMTKVLRKIK---GASYTIDAEEGMAYITGRA-NPRKLLRKLQS-GK-YANLCWVSA 77 (143)
Q Consensus 25 ~~kIkkaL~kI~---GVsV~VDle~~~VtV~G~v-dp~~Ll~aI~k-Gk-~Ael~~~~~ 77 (143)
...|++.|.... .|.+......+.++|.|.. .-+++.+.+++ |. .+..+.+..
T Consensus 146 ~~~v~~~l~~~~~~~~v~iA~~Nsp~~~VisG~~~~l~~~~~~l~~~g~~~~~~L~v~~ 204 (318)
T 3ezo_A 146 DDTVRAVCAEASATGVVEAVNFNAPAQVVIAGTKAGIEKACEIAKEKGAKRALPLPVSA 204 (318)
T ss_dssp HHHHHHHHHHHGGGSCEEEEEEEETTEEEEEEEHHHHHHHHHHHHHTTCSEEEECSCSS
T ss_pred HHHHHHHHHhcCCCCeEEEEEEcCCCCEEEeCCHHHHHHHHHHHHhCCCceEEECCCCC
Confidence 456777776542 4666666667789999975 56778888888 87 777777743
No 182
>3ady_A DOTD; 3-layer(BAB) sandwich, MTH1598-like, proton transport; 2.00A {Legionella pneumophila}
Probab=29.44 E-value=59 Score=24.27 Aligned_cols=36 Identities=8% Similarity=-0.037 Sum_probs=30.1
Q ss_pred CCEEEEEeecCHHHHHHHHhc--CCceEEeecCCCCCC
Q 048021 46 EGMAYITGRANPRKLLRKLQS--GKYANLCWVSAGNQI 81 (143)
Q Consensus 46 ~~~VtV~G~vdp~~Ll~aI~k--Gk~Ael~~~~~~~s~ 81 (143)
+..|++.=..+++.++++|.+ |++..+.+..+....
T Consensus 65 ~~~vs~dW~Gp~eelL~~LA~~~Gy~f~v~G~rpalPv 102 (148)
T 3ady_A 65 QARASVDWSGPIEELTARIAKAAHFRFRVLGKSPSVPV 102 (148)
T ss_dssp GCEEEEEEEEEHHHHHHHHHHHTTCEEEEESCCCSSCC
T ss_pred ccEEEEEeeCCHHHHHHHHHHHcCceEEeccCCCCCCc
Confidence 567888877889999999998 999999988876554
No 183
>2fgx_A Putative thioredoxin; NET3, NESG, GFT-glutaredoxin-like, structural genomics, PSI, protein structure initiative; NMR {Nitrosomonas europaea}
Probab=29.11 E-value=93 Score=21.26 Aligned_cols=28 Identities=14% Similarity=0.008 Sum_probs=18.5
Q ss_pred eecChhhHHHHHHHHhcc---CCee-EEEeCCC
Q 048021 18 DTNDPAWFSSMTKVLRKI---KGAS-YTIDAEE 46 (143)
Q Consensus 18 ~m~C~gC~~kIkkaL~kI---~GVs-V~VDle~ 46 (143)
.-.|+-|. .++..|.++ .||. .+||.++
T Consensus 37 ~~~C~~C~-~a~~~L~~l~~e~~i~~~~vDId~ 68 (107)
T 2fgx_A 37 REGCHLCE-EMIASLRVLQKKSWFELEVINIDG 68 (107)
T ss_dssp CSSCHHHH-HHHHHHHHHHHHSCCCCEEEETTT
T ss_pred CCCChhHH-HHHHHHHHHHHhcCCeEEEEECCC
Confidence 34799998 566677765 4673 5566554
No 184
>1fov_A Glutaredoxin 3, GRX3; active site disulfide, CIS Pro 53, electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 3grx_A*
Probab=28.98 E-value=74 Score=18.94 Aligned_cols=26 Identities=15% Similarity=0.200 Sum_probs=17.0
Q ss_pred eecChhhHHHHHHHHhccCCee-EEEeCC
Q 048021 18 DTNDPAWFSSMTKVLRKIKGAS-YTIDAE 45 (143)
Q Consensus 18 ~m~C~gC~~kIkkaL~kI~GVs-V~VDle 45 (143)
.-.|+.|. +++..|... |+. ..+|.+
T Consensus 8 ~~~C~~C~-~~~~~l~~~-~i~~~~~~i~ 34 (82)
T 1fov_A 8 KETCPYCH-RAKALLSSK-GVSFQELPID 34 (82)
T ss_dssp CSSCHHHH-HHHHHHHHH-TCCCEEEECT
T ss_pred CCCChhHH-HHHHHHHHC-CCCcEEEECC
Confidence 34799998 667778764 663 444544
No 185
>3im8_A Malonyl acyl carrier protein transacylase; fatty acid synthesis, malonyl-COA, acyl carrier protein TRAN (MCAT), FABD, acyltransferase; 2.10A {Streptococcus pneumoniae}
Probab=28.81 E-value=77 Score=25.14 Aligned_cols=53 Identities=17% Similarity=0.124 Sum_probs=37.7
Q ss_pred HHHHHHHHhccC--C-eeEEEeCCCCEEEEEeec-CHHHHHHHHhc-CC-ceEEeecCC
Q 048021 25 FSSMTKVLRKIK--G-ASYTIDAEEGMAYITGRA-NPRKLLRKLQS-GK-YANLCWVSA 77 (143)
Q Consensus 25 ~~kIkkaL~kI~--G-VsV~VDle~~~VtV~G~v-dp~~Ll~aI~k-Gk-~Ael~~~~~ 77 (143)
...|++.|...+ | |.+......+.++|.|.. .-+++.+.|++ |. ++..+.+..
T Consensus 138 ~~~~~~~~~~~~~~~~v~iA~~Nsp~~~VisG~~~~l~~~~~~l~~~g~~~~~~L~v~~ 196 (307)
T 3im8_A 138 VEVIEEACQKASELGVVTPANYNTPAQIVIAGEVVAVDRAVELLQEAGAKRLIPLKVSG 196 (307)
T ss_dssp HHHHHHHHHHHGGGSCEEEEEEEETTEEEEEECHHHHHHHHHHHHHHTCCEEEECCSSS
T ss_pred HHHHHHHHHhcCcCCeEEEEEEcCCCcEEEEcCHHHHHHHHHHHHhCCCceEEECCCCC
Confidence 456777776653 4 566666667789999975 56778888888 86 677777643
No 186
>3kcm_A Thioredoxin family protein; SGX, thioredoxin protein, PSI, structural genomics, protein initiative; 2.45A {Geobacter metallireducens gs-15}
Probab=28.79 E-value=1.3e+02 Score=19.85 Aligned_cols=48 Identities=13% Similarity=0.141 Sum_probs=26.7
Q ss_pred eecChhhHHHH---HHHHhccCC--ee-EEEeCCCCEEEEEeecCHHHHHHHHhc-CCceEEe
Q 048021 18 DTNDPAWFSSM---TKVLRKIKG--AS-YTIDAEEGMAYITGRANPRKLLRKLQS-GKYANLC 73 (143)
Q Consensus 18 ~m~C~gC~~kI---kkaL~kI~G--Vs-V~VDle~~~VtV~G~vdp~~Ll~aI~k-Gk~Ael~ 73 (143)
...|+.|...+ .+..+++++ +. +.|+.+.. +++.+.+.+++ |....++
T Consensus 37 ~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~v~~d~~--------~~~~~~~~~~~~~~~~~~~ 91 (154)
T 3kcm_A 37 ATWCPPCREEIPSMMRLNAAMAGKPFRMLCVSIDEG--------GKVAVEEFFRKTGFTLPVL 91 (154)
T ss_dssp CTTCHHHHHHHHHHHHHHHHTTTSSEEEEEEECCTT--------HHHHHHHHHHHHCCCCCEE
T ss_pred CCCCHHHHHHHHHHHHHHHHhccCCeEEEEEEcCCc--------chHHHHHHHHHcCCCeeEE
Confidence 56899999743 333334433 42 34433321 26677777777 7665544
No 187
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=28.78 E-value=86 Score=28.04 Aligned_cols=61 Identities=23% Similarity=0.253 Sum_probs=41.4
Q ss_pred EEEEEEeecChhhHHHHHHHHhcc----CCeeEEEeCCCCEEEEEe--ecCHHHHHHHHhc--CCceEE
Q 048021 12 TCGLKVDTNDPAWFSSMTKVLRKI----KGASYTIDAEEGMAYITG--RANPRKLLRKLQS--GKYANL 72 (143)
Q Consensus 12 tvvlkV~m~C~gC~~kIkkaL~kI----~GVsV~VDle~~~VtV~G--~vdp~~Ll~aI~k--Gk~Ael 72 (143)
.+.+.|.-.-.+=..++.++|++| +.+.|..|.+.++..|.| .+--+.++++|++ |..+++
T Consensus 407 v~~~av~p~~~~d~~kl~~~L~~l~~eDp~l~~~~~~et~e~il~g~Gelhlei~~~rL~~~~~v~v~~ 475 (693)
T 2xex_A 407 VIHLSVEPKSKADQDKMTQALVKLQEEDPTFHAHTDEETGQVIIGGMGELHLDILVDRMKKEFNVECNV 475 (693)
T ss_dssp SEEEEEEESSHHHHHHHHHHHHHHHHHCTTCEEEC---CCCEEEEESSHHHHHHHHHHHHHHSCCCEEE
T ss_pred eEEEEEEeCCchhHHHHHHHHHHHHhhCCeEEEEEcCCCCcEEEEeCCHHHHHHHHHHHHHHhCceEEE
Confidence 444555554455588888888877 234688888899999986 5678899999998 655543
No 188
>3oss_D Type 2 secretion system, secretin GSPD; general secretory pathway, HR domain, lanthanide-B TAG, protein transport; 2.63A {Escherichia coli}
Probab=28.58 E-value=49 Score=24.83 Aligned_cols=50 Identities=14% Similarity=0.070 Sum_probs=34.1
Q ss_pred hhHHHHHHHHhccCCeeEEEeCC-CCEEEEEee--cC---HHHHHHHHhc--CCceEE
Q 048021 23 AWFSSMTKVLRKIKGASYTIDAE-EGMAYITGR--AN---PRKLLRKLQS--GKYANL 72 (143)
Q Consensus 23 gC~~kIkkaL~kI~GVsV~VDle-~~~VtV~G~--vd---p~~Ll~aI~k--Gk~Ael 72 (143)
.=.+.+-+.|.++-|.++.+|.+ +|+|||... ++ ..+++..|.+ |+.+..
T Consensus 16 ~~i~~vl~~la~~~g~n~vv~~~V~G~vTl~s~~pl~~~~~~~~l~~vL~~~Gl~~~~ 73 (181)
T 3oss_D 16 TDLKSFIETVGANLNKTIIMGPGVQGKVSIRTMTPLNERQYYQLFLNLLEAQGYAVVP 73 (181)
T ss_dssp EEHHHHHHHHHHHHTCCEEECSCCCCEEEEEESSCEEHHHHHHHHHHHHHHHTEEEEE
T ss_pred CCHHHHHHHHHHHHCCcEEECCCCceEEEEEecCCCCHHHHHHHHHHHHHHCCCEEEE
Confidence 33566777788888888888876 889999842 33 4444454544 987653
No 189
>3mso_A Steroid delta-isomerase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.57A {Pseudomonas aeruginosa}
Probab=28.57 E-value=33 Score=24.09 Aligned_cols=33 Identities=18% Similarity=0.253 Sum_probs=28.1
Q ss_pred ccCCee-EEEeCCCCEEEEEeecCHHHHHHHHhc
Q 048021 34 KIKGAS-YTIDAEEGMAYITGRANPRKLLRKLQS 66 (143)
Q Consensus 34 kI~GVs-V~VDle~~~VtV~G~vdp~~Ll~aI~k 66 (143)
.++||+ +++|.+.+.+.+..-++|.+.+.+|..
T Consensus 95 ~v~Gv~v~~~~~dGkI~~~~~~~~P~~~~~~~~~ 128 (143)
T 3mso_A 95 ELKGIDMIRFDDDGRIVDFEVMVRPMSGLQALGE 128 (143)
T ss_dssp EEEEEEEEEECTTSCEEEEEEEEESHHHHHHHHH
T ss_pred EEEEEEEEEECCCCcEEEEEEEECcHHHHHHHHH
Confidence 678885 888888888899999999999988876
No 190
>1zpv_A ACT domain protein; structural genomics, PSI, protein structure INIT midwest center for structural genomics, MCSG, unknown funct; 1.90A {Streptococcus pneumoniae} SCOP: d.58.18.7
Probab=28.56 E-value=1.1e+02 Score=19.07 Aligned_cols=57 Identities=5% Similarity=0.061 Sum_probs=38.0
Q ss_pred ceEEEEEEee-cChhhHHHHHHHHhccCC-e-eEEEeCCCCEEEE----E--eecCHHHHHHHHhc
Q 048021 10 KMTCGLKVDT-NDPAWFSSMTKVLRKIKG-A-SYTIDAEEGMAYI----T--GRANPRKLLRKLQS 66 (143)
Q Consensus 10 ~~tvvlkV~m-~C~gC~~kIkkaL~kI~G-V-sV~VDle~~~VtV----~--G~vdp~~Ll~aI~k 66 (143)
.+.++|.|.. .-.|=..+|.++|.+..+ | ++......+...+ + +..+.++|+++|++
T Consensus 3 ~~~~~l~v~~~DrpGila~vt~~la~~~~NI~~i~~~~~~~~~~~~i~v~~~~~~~l~~l~~~L~~ 68 (91)
T 1zpv_A 3 AMKAIITVVGKDKSGIVAGVSGKIAELGLNIDDISQTVLDEYFTMMAVVSSDEKQDFTYLRNEFEA 68 (91)
T ss_dssp CEEEEEEEEESCCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEESSCCCHHHHHHHHHH
T ss_pred CceEEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEeEEEcCEEEEEEEEEeCCCCCHHHHHHHHHH
Confidence 3667788876 679999999999998643 2 3444332343322 2 22467899999987
No 191
>3flj_A Uncharacterized protein conserved in bacteria WIT cystatin-like fold; YP_168589.1; HET: MSE; 2.00A {Silicibacter pomeroyi dss-3}
Probab=28.52 E-value=31 Score=25.51 Aligned_cols=33 Identities=15% Similarity=0.152 Sum_probs=28.3
Q ss_pred ccCCee-EEEeCCCCEEEEEeecCHHHHHHHHhc
Q 048021 34 KIKGAS-YTIDAEEGMAYITGRANPRKLLRKLQS 66 (143)
Q Consensus 34 kI~GVs-V~VDle~~~VtV~G~vdp~~Ll~aI~k 66 (143)
.++||+ +++|.+.+.+.+..-++|.+.+.+|..
T Consensus 102 ~v~gvd~~~fdedGkI~e~~vm~rP~k~l~al~~ 135 (155)
T 3flj_A 102 DAVGVDLITLNEGGLIQDFEVVMRPYKTVGALRD 135 (155)
T ss_dssp EEEEEEEEEECTTSSEEEEEEEEECHHHHHHHHH
T ss_pred EEEEEEEEEEcCCCCEEEEEEEEChHHHHHHHHH
Confidence 567884 888888999999999999999998875
No 192
>1hfe_L Protein (Fe-only hydrogenase (E.C.1.18.99.1) (larger subunit)); hydrogene metabolism, periplasm; 1.60A {Desulfovibrio vulgaris subsp} SCOP: c.96.1.1 d.58.1.5 PDB: 1e08_A* 1gx7_A*
Probab=28.48 E-value=66 Score=27.02 Aligned_cols=45 Identities=16% Similarity=0.275 Sum_probs=31.1
Q ss_pred hccCCe-eEEEeCCC---CEEEEEeecCHHHHHHHHhcCC---c-eEEeecCC
Q 048021 33 RKIKGA-SYTIDAEE---GMAYITGRANPRKLLRKLQSGK---Y-ANLCWVSA 77 (143)
Q Consensus 33 ~kI~GV-sV~VDle~---~~VtV~G~vdp~~Ll~aI~kGk---~-Ael~~~~~ 77 (143)
+.++|+ +++++... +.+.|.|-.+..+|+++|++|+ + +|+...+.
T Consensus 328 r~~~~~~e~~~~~~~~~~~~~~~~G~~n~~~~l~~~k~g~~~~~fiEvmaCpg 380 (421)
T 1hfe_L 328 RGLDGIKEATVNVGGTDVKVAVVHGAKRFKQVCDDVKAGKSPYHFIEYMACPG 380 (421)
T ss_dssp CSSCSEEEEEEEETTEEEEEEEEESGGGHHHHHHHHHTTCCCCSEEEEESSTT
T ss_pred ccCCCceEEEEecCCeEEEEEEEcCHHHHHHHHHHHHcCCCCCcEEEECCCCC
Confidence 445788 67776655 3455567789999999999833 2 67766653
No 193
>2hg4_A DEBS, 6-deoxyerythronolide B synthase; ketosynthase, acyltransferase, module 5, transferase; 2.73A {Saccharopolyspora erythraea}
Probab=28.03 E-value=1.2e+02 Score=28.11 Aligned_cols=53 Identities=11% Similarity=0.087 Sum_probs=41.6
Q ss_pred HHHHHHHHhccCC-eeEEEeCCCCEEEEEeec-CHHHHHHHHhc-CCceEEeecCC
Q 048021 25 FSSMTKVLRKIKG-ASYTIDAEEGMAYITGRA-NPRKLLRKLQS-GKYANLCWVSA 77 (143)
Q Consensus 25 ~~kIkkaL~kI~G-VsV~VDle~~~VtV~G~v-dp~~Ll~aI~k-Gk~Ael~~~~~ 77 (143)
...|++.|...++ |.|......+.++|.|.. .-++|++.|++ |..+..+.+..
T Consensus 687 ~~~v~~~l~~~~~~v~iA~~Nsp~~~viSG~~~ai~~l~~~l~~~gi~~~~L~v~~ 742 (917)
T 2hg4_A 687 TEQAAERIGRFAGALSIASVNGPRSVVVAGESGPLDELIAECEAEAHKARRIPVDY 742 (917)
T ss_dssp HHHHHHHHGGGTTSEEEEEEEETTEEEEEECTTHHHHHHHHHHHHTCCEEEESCSC
T ss_pred HHHHHHHHhhcCCceEEEEEcCCCceEEecCHHHHHHHHHHHHhcCceeEEecCCc
Confidence 5677888877765 677777778899999986 46888888988 99988887753
No 194
>2go8_A Hypothetical protein YQJZ; SR435, protein structure, structural genomics, PSI, protein initiative, northeast structural genomics consortium; 2.30A {Bacillus subtilis} SCOP: d.58.4.5
Probab=28.01 E-value=1.6e+02 Score=20.77 Aligned_cols=65 Identities=6% Similarity=-0.078 Sum_probs=40.3
Q ss_pred CCCCCCCCceEEEEEEee-cCh----hhHHHHHHHHhccCCe-eEEEeCC--CCEEEEEeecCHHHHHHHHhc
Q 048021 2 FSSSSSSAKMTCGLKVDT-NDP----AWFSSMTKVLRKIKGA-SYTIDAE--EGMAYITGRANPRKLLRKLQS 66 (143)
Q Consensus 2 ~~ss~~s~~~tvvlkV~m-~C~----gC~~kIkkaL~kI~GV-sV~VDle--~~~VtV~G~vdp~~Ll~aI~k 66 (143)
|+...-.+-.+|+|.|.. .++ .=+++++..+.+++|- +++.-.. ...++|+---|.+.|.+....
T Consensus 5 ~~~~~~~pm~aViFe~~~~~~~~~Y~~la~~~~~la~~qpGFI~~Es~~~~dg~~is~SyW~deeai~aW~~~ 77 (122)
T 2go8_A 5 LSKTPEPPYYAVIFSSVKSENDTGYGETAERMVSLAADQPGFLGVESVREADGRGITVSYWDSMDAINHWRHH 77 (122)
T ss_dssp SCCCCSSCEEEEEEEEECC------CHHHHHHHHHHHHSTTEEEEEEEECTTSEEEEEEEESCHHHHHHHHHH
T ss_pred cCCCCCCCEEEEEEEEEeCCchhHHHHHHHHHHHHHhhCCCceEEEEEEcCCCCEEEEEEeCCHHHHHHHHhC
Confidence 333333455578888875 333 3367888889999996 6554333 344555556788888777655
No 195
>3u1k_A Polyribonucleotide nucleotidyltransferase 1, MITO; RNAse PH, KH domain, exoribonuclease; HET: CIT; 2.13A {Homo sapiens}
Probab=27.98 E-value=63 Score=29.17 Aligned_cols=58 Identities=10% Similarity=-0.009 Sum_probs=35.5
Q ss_pred CCCceEEEEEEeec----ChhhHHHHHHHHhccCCeeEEEeCCCCEEEEEeecCHHHHHHHHhc
Q 048021 7 SSAKMTCGLKVDTN----DPAWFSSMTKVLRKIKGASYTIDAEEGMAYITGRANPRKLLRKLQS 66 (143)
Q Consensus 7 ~s~~~tvvlkV~m~----C~gC~~kIkkaL~kI~GVsV~VDle~~~VtV~G~vdp~~Ll~aI~k 66 (143)
...++..+++|+-. =-|=-.++.|.|..--|++++|+ ++|+|.|.+ .|++.+.+|++.
T Consensus 563 ~~ap~~~~~~I~~~kI~~vIG~gG~~Ik~I~e~tg~~I~I~-d~G~V~I~~-~~~~~~~~A~~~ 624 (630)
T 3u1k_A 563 ENGPVVETVQVPLSKRAKFVGPGGYNLKKLQAETGVTISQV-DEETFSVFA-PTPSAMHEARDF 624 (630)
T ss_dssp TTCCEEEEEECCHHHHHHHHCGGGHHHHHHHHHHCCEEEEC-SSSEEEEEE-SSHHHHHHHHHH
T ss_pred ccCCeEEEEEeChhHhheeECCCChhHHHHHHHHCCEEEEc-CCcEEEEEe-CCHHHHHHHHHH
Confidence 34566778888631 11111223333444458888887 689999998 677777766653
No 196
>3trg_A Acylphosphatase; fatty acid and phospholipid metabolism, hydrolase; 1.60A {Coxiella burnetii}
Probab=27.95 E-value=1.1e+02 Score=20.74 Aligned_cols=64 Identities=14% Similarity=0.088 Sum_probs=39.1
Q ss_pred eEEEEEEee--cChhhHHHHHHHHhccCCe-eEEEeCCCCEEEEEeecCH---HHHHHHHhcC-CceEEeec
Q 048021 11 MTCGLKVDT--NDPAWFSSMTKVLRKIKGA-SYTIDAEEGMAYITGRANP---RKLLRKLQSG-KYANLCWV 75 (143)
Q Consensus 11 ~tvvlkV~m--~C~gC~~kIkkaL~kI~GV-sV~VDle~~~VtV~G~vdp---~~Ll~aI~kG-k~Ael~~~ 75 (143)
.++.+.|.+ .--|-..-+.+.-.++ |+ -+.-++.+++|.|.-..++ ++++++|.+| ..|.+-.+
T Consensus 12 ~~~~i~V~G~VQGVGFR~~v~~~A~~l-gL~G~VrN~~dG~Vei~~eG~~~~l~~f~~~l~~gPp~A~V~~v 82 (98)
T 3trg_A 12 TCIHVTVSGKVQGVFFRESVRKKAEEL-QLTGWVKNLSHGDVELVACGERDSIMILTEWLWEGPPQAAVSNV 82 (98)
T ss_dssp EEEEEEEEEECSSSCHHHHHHHHHHHT-TCEEEEEECTTSCEEEEEEEEHHHHHHHHHHTTTCSTTCEEEEE
T ss_pred EEEEEEEEEeECCCCccHHHHHHHHHc-CCeEEEEECCCCEEEEEEEECHHHHHHHHHHHHhCCCCcEEEEE
Confidence 355677776 4556666666655554 77 4778899998888654444 4555566553 33444443
No 197
>2qip_A Protein of unknown function VPA0982; APC85975, vibrio parahaemolyticus RIMD 2210633, STR genomics, PSI-2, protein structure initiative; 1.48A {Vibrio parahaemolyticus}
Probab=27.89 E-value=30 Score=25.07 Aligned_cols=32 Identities=16% Similarity=0.285 Sum_probs=26.3
Q ss_pred CCEEEEEeecCHHHHHHHHhc--CCceEEeecCC
Q 048021 46 EGMAYITGRANPRKLLRKLQS--GKYANLCWVSA 77 (143)
Q Consensus 46 ~~~VtV~G~vdp~~Ll~aI~k--Gk~Ael~~~~~ 77 (143)
+.-|.|+|..|=..++++|++ |+++++++.++
T Consensus 110 d~~vLvSgD~DF~plv~~lr~~~G~~V~v~g~~~ 143 (165)
T 2qip_A 110 DRVILVSGDGDFSLLVERIQQRYNKKVTVYGVPR 143 (165)
T ss_dssp SEEEEECCCGGGHHHHHHHHHHHCCEEEEEECGG
T ss_pred CEEEEEECChhHHHHHHHHHHHcCcEEEEEeCCC
Confidence 456777788898889999987 99999999754
No 198
>3erw_A Sporulation thiol-disulfide oxidoreductase A; thioredoxin-like fold, RESA-like fold, dithiol, STOA, redox-active center; 2.50A {Bacillus subtilis} SCOP: c.47.1.0
Probab=27.78 E-value=1.2e+02 Score=19.41 Aligned_cols=51 Identities=6% Similarity=0.014 Sum_probs=29.8
Q ss_pred eecChhhHHHH---HHHHhccC--Cee-EEEeCCCCEEEEEeecCHHHHHHHHhc-CCceEEee
Q 048021 18 DTNDPAWFSSM---TKVLRKIK--GAS-YTIDAEEGMAYITGRANPRKLLRKLQS-GKYANLCW 74 (143)
Q Consensus 18 ~m~C~gC~~kI---kkaL~kI~--GVs-V~VDle~~~VtV~G~vdp~~Ll~aI~k-Gk~Ael~~ 74 (143)
...|..|..-. .+..++++ ++. +.|+.+.. .-+++.+.+.+++ |..-.++.
T Consensus 43 ~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~v~~d~~------~~~~~~~~~~~~~~~~~~~~~~ 100 (145)
T 3erw_A 43 TSWCPPCKKELPQFQSFYDAHPSDSVKLVTVNLVNS------EQNQQVVEDFIKANKLTFPIVL 100 (145)
T ss_dssp CSSCHHHHHHHHHHHHHHHHCCCSSEEEEEEECGGG------SSCHHHHHHHHHHTTCCSCEEE
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEccCC------cCCHHHHHHHHHHcCCceeEEE
Confidence 56899998743 33333443 452 44444321 2378888888888 77655443
No 199
>2kyy_A Possible ATP-dependent DNA helicase RECG-related; structural genomics, northeast structural genomics consortiu AAA_4 domain, PSI-2; NMR {Nitrosomonas europaea}
Probab=27.73 E-value=1.1e+02 Score=21.85 Aligned_cols=23 Identities=22% Similarity=0.111 Sum_probs=18.9
Q ss_pred CCCcccCCcCcccccccccccCc
Q 048021 119 MLHYYPQPRHTMAAYPYHHDYHH 141 (143)
Q Consensus 119 ~~~y~~~~~~~~~~~~~~~~~~~ 141 (143)
.+-|.-.+..+..|-+|||.-||
T Consensus 131 ~~~YiR~g~~~~~~~~~~~~~~~ 153 (153)
T 2kyy_A 131 GGAYRRIGSSDQRCVLEHHHHHH 153 (153)
T ss_dssp CCSCCCCCSCCCCCCCCCCCCCC
T ss_pred ccEEEEeCCCCEeCChhhcccCC
Confidence 34677888889999999998776
No 200
>3enc_A Protein PCC1; dimerization domain, keops, telomere, unknown function; 2.63A {Pyrococcus furiosus} PDB: 3eno_C
Probab=27.70 E-value=1.4e+02 Score=20.12 Aligned_cols=54 Identities=4% Similarity=0.025 Sum_probs=39.7
Q ss_pred eEEEEEEeecChhhHHHHHHHHh----ccCCe--eEEEeCCCCEEEEEee-cCHHHHHHHH
Q 048021 11 MTCGLKVDTNDPAWFSSMTKVLR----KIKGA--SYTIDAEEGMAYITGR-ANPRKLLRKL 64 (143)
Q Consensus 11 ~tvvlkV~m~C~gC~~kIkkaL~----kI~GV--sV~VDle~~~VtV~G~-vdp~~Ll~aI 64 (143)
.+++|.++...+.=++.|-++|. .+++- .+++++++++++|+-. .|...|+.+|
T Consensus 11 i~a~l~~e~~~~e~A~iVy~Sl~~E~~~~~~~RS~~~i~l~~~~l~i~i~A~D~~aLRA~l 71 (87)
T 3enc_A 11 VQAKIEMEFPSEDVAKVVYEAVLYEHLSVPYRRSEIDFKLEGKKIILDIKATDSSALRGTV 71 (87)
T ss_dssp EEEEEEEECSCHHHHHHHHHHHTHHHHTCCSCSSEECCEESSSEEEEEEEESSHHHHHHHH
T ss_pred eEEEEEEEeCCHHHHHHHHHHhCcccccCCCCCceEEEEEeCCEEEEEEEEChHHHHHHHH
Confidence 45778888877777788877774 45555 3888999999999865 4677776665
No 201
>2c5s_A THII, probable thiamine biosynthesis protein THII; RNA-binding protein, RNA binding protein, tRNA modification, 4-thiouridine synthase; HET: AMP; 2.5A {Bacillus anthracis} SCOP: c.26.2.6 d.308.1.1
Probab=27.63 E-value=70 Score=26.71 Aligned_cols=41 Identities=20% Similarity=0.256 Sum_probs=22.5
Q ss_pred hHHHHHHHHhccCCeeEEEeCCCCEEEEEeec-CHHHHHHHHhc
Q 048021 24 WFSSMTKVLRKIKGASYTIDAEEGMAYITGRA-NPRKLLRKLQS 66 (143)
Q Consensus 24 C~~kIkkaL~kI~GVsV~VDle~~~VtV~G~v-dp~~Ll~aI~k 66 (143)
..+.|+++|+.++++ .|....+++.|.... +.+.++++|.+
T Consensus 37 L~~ni~~~l~~~~~~--~v~~~~gri~v~~~~~~~~~~~~~L~~ 78 (413)
T 2c5s_A 37 LKDNVKFKLKKFPNI--KIDATHDRMYIQLNGEDHEAVSERLKD 78 (413)
T ss_dssp HHHHHHHHTTTSTTC--EEEECSSCEEEECTTCCHHHHHHHHTT
T ss_pred HHHHHHHHHhhcCce--EEEEECCEEEEEeCCCCHHHHHHHHhh
Confidence 455566666555333 344445666665422 45666666666
No 202
>2ctj_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=27.52 E-value=55 Score=22.07 Aligned_cols=45 Identities=9% Similarity=0.081 Sum_probs=27.7
Q ss_pred ceEEEEEEeec-----ChhhHHHHHHHHhccCCeeEEEeCCC---CEEEEEee
Q 048021 10 KMTCGLKVDTN-----DPAWFSSMTKVLRKIKGASYTIDAEE---GMAYITGR 54 (143)
Q Consensus 10 ~~tvvlkV~m~-----C~gC~~kIkkaL~kI~GVsV~VDle~---~~VtV~G~ 54 (143)
..+.+|+|+-. -+.--+.|++..++..||.++|+.+. ++|+|.|.
T Consensus 16 ~vt~~i~Ip~~~i~~iIG~gGk~Ir~I~eetggv~I~i~~~g~~~~~V~I~G~ 68 (95)
T 2ctj_A 16 IAEVEVSIPAKLHNSLIGTKGRLIRSIMEECGGVHIHFPVEGSGSDTVVIRGP 68 (95)
T ss_dssp SCCEEEECCHHHHHHHHCSSSHHHHHHHHHHTSCEEECCCTTTTCCEEEEESC
T ss_pred cEEEEEEECHHHHhhhCCCCchhHHHHHHHcCCCEEEeCCCCCCcceEEEEcC
Confidence 34677777631 12333566666666558877776432 39999985
No 203
>3h8q_A Thioredoxin reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC, developmental protein, differentiation; 2.21A {Homo sapiens} SCOP: c.47.1.0
Probab=27.43 E-value=1.4e+02 Score=19.76 Aligned_cols=48 Identities=6% Similarity=0.146 Sum_probs=28.5
Q ss_pred EEEEEeecChhhHHHHHHHHhccCCee-EEEeCCCCEEEEEeecCHHHHHHHHhc--CCc
Q 048021 13 CGLKVDTNDPAWFSSMTKVLRKIKGAS-YTIDAEEGMAYITGRANPRKLLRKLQS--GKY 69 (143)
Q Consensus 13 vvlkV~m~C~gC~~kIkkaL~kI~GVs-V~VDle~~~VtV~G~vdp~~Ll~aI~k--Gk~ 69 (143)
+++=..-.|+-|. ++++.|.++ |+. -.+|++. ..+...+.+.|.+ |..
T Consensus 19 v~vy~~~~Cp~C~-~ak~~L~~~-~i~~~~~dvd~-------~~~~~~~~~~l~~~~g~~ 69 (114)
T 3h8q_A 19 VVIFSKSYCPHST-RVKELFSSL-GVECNVLELDQ-------VDDGARVQEVLSEITNQK 69 (114)
T ss_dssp EEEEECTTCHHHH-HHHHHHHHT-TCCCEEEETTT-------STTHHHHHHHHHHHHSCC
T ss_pred EEEEEcCCCCcHH-HHHHHHHHc-CCCcEEEEecC-------CCChHHHHHHHHHHhCCC
Confidence 3443335899997 678888875 673 3344432 1245677677744 554
No 204
>4e6k_G BFD, bacterioferritin-associated ferredoxin; protein complex, iron storage, iron binding, iron mobilizati ferritin, iron homeostasis; HET: HEM; 2.00A {Pseudomonas aeruginosa}
Probab=27.11 E-value=27 Score=22.88 Aligned_cols=17 Identities=24% Similarity=0.124 Sum_probs=14.6
Q ss_pred ecChhhHHHHHHHHhcc
Q 048021 19 TNDPAWFSSMTKVLRKI 35 (143)
Q Consensus 19 m~C~gC~~kIkkaL~kI 35 (143)
+.|++|...|++.|...
T Consensus 36 t~CG~C~~~i~~il~~~ 52 (73)
T 4e6k_G 36 TQCGKCASLAKQVVRET 52 (73)
T ss_dssp SSSCTTHHHHHHHHHHH
T ss_pred CCCCchHHHHHHHHHHH
Confidence 57999999999999763
No 205
>3o6p_A Peptide ABC transporter, peptide-binding protein; structural genomics, PSI-2, protein structure initiative; 1.65A {Enterococcus faecalis}
Probab=27.00 E-value=1.2e+02 Score=22.05 Aligned_cols=44 Identities=9% Similarity=-0.016 Sum_probs=31.0
Q ss_pred hhhHHHHHHHHhc-cCCeeEEEeCCCCEEEEEeecCHHHHHHHHhc-CCceEEeec
Q 048021 22 PAWFSSMTKVLRK-IKGASYTIDAEEGMAYITGRANPRKLLRKLQS-GKYANLCWV 75 (143)
Q Consensus 22 ~gC~~kIkkaL~k-I~GVsV~VDle~~~VtV~G~vdp~~Ll~aI~k-Gk~Ael~~~ 75 (143)
..-+..|+..|++ ++||+|+|.. ++...+.+++.+ .+++.+.+.
T Consensus 112 ~~~a~~i~~~l~~~i~GI~v~i~~----------~~~~~~~~~~~~g~~d~~~~~w 157 (229)
T 3o6p_A 112 KKTVEFVQGSIQDALDGVKVTVSP----------VPFSVRLDRSNKGDFDAVIGGW 157 (229)
T ss_dssp HHHHHHHHHHHHHHSTTEEEEEEE----------ECHHHHHHHHHHTCCSEEEEEE
T ss_pred HHHHHHHHHHHHHhCCCcEEEEEe----------cCHHHHHHHhhcCCceEEEecc
Confidence 4456678888888 8898555432 567788888877 788777543
No 206
>1vig_A Vigilin; RNA-binding protein, ribonucleoprotein; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1vih_A
Probab=26.92 E-value=66 Score=20.16 Aligned_cols=54 Identities=11% Similarity=0.185 Sum_probs=30.0
Q ss_pred CceEEEEEEeec-C----hhhHHHHHHHHhccCCeeEEEeCCC---CEEEEEeecCHHHHHHHHh
Q 048021 9 AKMTCGLKVDTN-D----PAWFSSMTKVLRKIKGASYTIDAEE---GMAYITGRANPRKLLRKLQ 65 (143)
Q Consensus 9 ~~~tvvlkV~m~-C----~gC~~kIkkaL~kI~GVsV~VDle~---~~VtV~G~vdp~~Ll~aI~ 65 (143)
...+.+|+|+-. + +.--+.|++ |..--|+.+.|+.+. +.|+|.|. ++.+.+|++
T Consensus 3 ~~~~~~i~I~~~~ig~iIG~gG~~I~~-I~e~tg~~I~i~~~g~~~~~V~I~G~--~~~v~~A~~ 64 (71)
T 1vig_A 3 RMDYVEINIDHKFHRHLIGKSGANINR-IKDQYKVSVRIPPDSEKSNLIRIEGD--PQGVQQAKR 64 (71)
T ss_dssp CCEEEEEEECSSHHHHHTCSSCCHHHH-HHHHTCCEEECCCCCSSSEEEEEEES--SHHHHHHHH
T ss_pred ceEEEEEEECHHHhhhhcCCCCccHHH-HHHHHCCEEEECCCCCcccEEEEEcC--HHHHHHHHH
Confidence 345667777632 1 111224555 444468877776543 29999997 255655544
No 207
>3hxs_A Thioredoxin, TRXP; electron transport; 2.00A {Bacteroides fragilis} PDB: 3hyp_A
Probab=26.91 E-value=69 Score=21.15 Aligned_cols=55 Identities=7% Similarity=0.019 Sum_probs=27.8
Q ss_pred EEEEE-eecChhhHHH---HHHHHhccCC-ee-EEEeCCCCEEEEEeecCHHHHHHHHhc-CCceEEeecCC
Q 048021 13 CGLKV-DTNDPAWFSS---MTKVLRKIKG-AS-YTIDAEEGMAYITGRANPRKLLRKLQS-GKYANLCWVSA 77 (143)
Q Consensus 13 vvlkV-~m~C~gC~~k---IkkaL~kI~G-Vs-V~VDle~~~VtV~G~vdp~~Ll~aI~k-Gk~Ael~~~~~ 77 (143)
+++.. .-.|+.|..- +.+..+..++ |. +.||.++. ..|.++..- |.++.++.-..
T Consensus 54 vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~~----------~~~~~~~~v~~~Pt~~~~~~~ 115 (141)
T 3hxs_A 54 AIVDFYADWCGPCKMVAPILEELSKEYAGKIYIYKVNVDKE----------PELARDFGIQSIPTIWFVPMK 115 (141)
T ss_dssp EEEEEECTTCTTHHHHHHHHHHHHHHTTTTCEEEEEETTTC----------HHHHHHTTCCSSSEEEEECSS
T ss_pred EEEEEECCCCHHHHHHHHHHHHHHHHhcCceEEEEEECCCC----------HHHHHHcCCCCcCEEEEEeCC
Confidence 34444 3479999863 3343344443 43 55555432 244454444 66665554333
No 208
>2jvz_A KH type-splicing, FAR upstream element-binding protein 2; RNA binding protein, KH domain, KSRP, posttranscriptional regulation, mRNA decay; NMR {Homo sapiens}
Probab=26.88 E-value=69 Score=22.51 Aligned_cols=51 Identities=18% Similarity=0.231 Sum_probs=31.0
Q ss_pred EEEEEEeecChhhH----HHHHHHHhccCCeeEEEeCC-----CCEEEEEeecCHHHHHHHH
Q 048021 12 TCGLKVDTNDPAWF----SSMTKVLRKIKGASYTIDAE-----EGMAYITGRANPRKLLRKL 64 (143)
Q Consensus 12 tvvlkV~m~C~gC~----~kIkkaL~kI~GVsV~VDle-----~~~VtV~G~vdp~~Ll~aI 64 (143)
++.|.|+-..-|+. .+.-+.|+..-|+.+.|+.+ ++.|+|.|. ++.+.+|.
T Consensus 92 ~~~i~vp~~~~g~iIGk~G~~I~~i~~~tg~~I~i~~~~~~~~~~~v~I~G~--~~~v~~A~ 151 (164)
T 2jvz_A 92 GIDVPVPRHSVGVVIGRSGEMIKKIQNDAGVRIQFKQDDGTGPEKIAHIMGP--PDRCEHAA 151 (164)
T ss_dssp SBCCEEETTTHHHHHCSSSHHHHHHHHHTCCEEEECCCCTTSSEEEEEEESC--HHHHHHHH
T ss_pred eEEEEEChhhccccCCCCcHhHHHHHHHHCCeEEEeCCCCCCCcEEEEEEcC--HHHHHHHH
Confidence 35666665444443 23344566667888888764 578999986 44555444
No 209
>1v58_A Thiol:disulfide interchange protein DSBG; reduced DSBG, redox protein, protein disulfide isomerase, thioredoxin fold; 1.70A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB: 1v57_A 2h0i_A 2h0h_A 2h0g_A 2iy2_A
Probab=26.88 E-value=1.1e+02 Score=23.15 Aligned_cols=45 Identities=7% Similarity=-0.017 Sum_probs=30.4
Q ss_pred hhhHHHHHHHH-----hccCCe-eEEEeCCCCEE-EEEeecCHHHHHHHHhc
Q 048021 22 PAWFSSMTKVL-----RKIKGA-SYTIDAEEGMA-YITGRANPRKLLRKLQS 66 (143)
Q Consensus 22 ~gC~~kIkkaL-----~kI~GV-sV~VDle~~~V-tV~G~vdp~~Ll~aI~k 66 (143)
..|...|.+.. .++.|+ .+-+.-.+|++ .+.|..+++.|.++|++
T Consensus 179 ~~~~~~v~~~~~l~~~~gv~gtPt~vi~~~~G~~~~~~G~~~~~~L~~~l~~ 230 (241)
T 1v58_A 179 TEQMKVLSDNEKLMDDLGANVTPAIYYMSKENTLQQAVGLPDQKTLNIIMGN 230 (241)
T ss_dssp HHHHHHHHHHHHHHHHHTCCSSCEEEEEETTTEEEEEESSCCHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCEEEecCCCCHHHHHHHHHH
Confidence 34655555432 246777 66665545664 56788899999999987
No 210
>3b47_A GSU0582, methyl-accepting chemotaxis protein; PAS domain, C-type heme containing sensor, unknown function, signaling protein; HET: HEM; 2.00A {Geobacter sulfurreducens}
Probab=26.76 E-value=99 Score=21.67 Aligned_cols=48 Identities=15% Similarity=0.048 Sum_probs=27.0
Q ss_pred HHHHHHHhccCCe-eEEEeCCCCEEEEEeec-CHHHHHHHHhcCCceEEe
Q 048021 26 SSMTKVLRKIKGA-SYTIDAEEGMAYITGRA-NPRKLLRKLQSGKYANLC 73 (143)
Q Consensus 26 ~kIkkaL~kI~GV-sV~VDle~~~VtV~G~v-dp~~Ll~aI~kGk~Ael~ 73 (143)
..+-+.+.+++|| ++.|=-+++++.-.+.. ....+.++|.+|+.....
T Consensus 35 ~~~i~~i~~~~~I~~irI~~~~g~i~~s~~~~~d~e~~~~l~~g~~~~~~ 84 (134)
T 3b47_A 35 ERYVADVRGKGAVLDLRIYDAAGRPAGKKQDAPDGEVQAALTSGATAEKR 84 (134)
T ss_dssp HHHHHHHTTCCCEEEEEEEETTSCBC-----CCCHHHHHHHHHTSCEEEE
T ss_pred HHHHHHHhccCCceEEEEECCCCcEeccCCCCccHHHHHHHhCCCeEEEE
Confidence 3444556677899 78876666655422211 222666777777765554
No 211
>2dgr_A Ring finger and KH domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=26.71 E-value=1.3e+02 Score=19.58 Aligned_cols=51 Identities=16% Similarity=0.187 Sum_probs=28.2
Q ss_pred CCCCCCceEEEEEEeecChhhH-----HHHHHHHhccCCeeEEEeC--CCCEEEEEeec
Q 048021 4 SSSSSAKMTCGLKVDTNDPAWF-----SSMTKVLRKIKGASYTIDA--EEGMAYITGRA 55 (143)
Q Consensus 4 ss~~s~~~tvvlkV~m~C~gC~-----~kIkkaL~kI~GVsV~VDl--e~~~VtV~G~v 55 (143)
|-+.....+..|.|+-..-|+. .+|++ |+.--|+.+.|.. ++..|++.|..
T Consensus 3 ~~~~~~~~~~~i~VP~~~vG~IIGkgG~tIk~-Iqe~Tga~I~I~~~~~~~~v~ItG~~ 60 (83)
T 2dgr_A 3 SGSSGGQTTIQVRVPYRVVGLVVGPKGATIKR-IQQRTHTYIVTPGRDKEPVFAVTGMP 60 (83)
T ss_dssp SCCSCCSEEEEEECCHHHHHHHHTTTTSSHHH-HHHHTTCEEECCCSSSCCEEEEEECT
T ss_pred CCCCCCceEEEEEeChHHeeeeECCCchHHHH-HHHHhCCeEEecCCCCCCeEEEEcCH
Confidence 3344445566677754222222 13444 5555687777763 45678888864
No 212
>2yqr_A KIAA0907 protein; structure genomics, KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=26.63 E-value=1.7e+02 Score=20.62 Aligned_cols=61 Identities=21% Similarity=0.165 Sum_probs=33.6
Q ss_pred CCCCCCCceEEEEEEeecCh----hhH----------HHHHHHHhccCCeeEEEeC---------------CCCEEEEEe
Q 048021 3 SSSSSSAKMTCGLKVDTNDP----AWF----------SSMTKVLRKIKGASYTIDA---------------EEGMAYITG 53 (143)
Q Consensus 3 ~ss~~s~~~tvvlkV~m~C~----gC~----------~kIkkaL~kI~GVsV~VDl---------------e~~~VtV~G 53 (143)
||-|.+....+.-||.+..+ ++- +.|++ |.+--|+.|.|.- +...|.|.+
T Consensus 2 ~~~~~~~~~~~~~ki~ip~~~~~p~fn~ig~IIGpgG~tiK~-I~~eTG~kI~I~G~gS~~~e~~~~~e~~e~l~V~I~a 80 (119)
T 2yqr_A 2 SSGSSGGMHYVQDKLFVGLEHAVPTFNVKEKVEGPGCSYLQH-IQIETGAKVFLRGKGSGCIEPASGREAFEPMYIYISH 80 (119)
T ss_dssp CCCCCSCCSCEEEEEECCCTTSCTTTCHHHHHSCGGGHHHHH-HHHHHCCEEEEESBTTTCCCTTTSSCCSSBCEEEEEE
T ss_pred CCCCCCCeeEEEEEEEcCCccCCCCCCeeeeEECCCChHHHH-HHHHHCCEEEEecCCccccccccccccCCCcEEEEEe
Confidence 44444555556667765443 222 33333 4444577777751 346888887
Q ss_pred ecCHHHHHHHHh
Q 048021 54 RANPRKLLRKLQ 65 (143)
Q Consensus 54 ~vdp~~Ll~aI~ 65 (143)
.+++.|.+|++
T Consensus 81 -~~~e~i~~A~~ 91 (119)
T 2yqr_A 81 -PKPEGLAAAKK 91 (119)
T ss_dssp -SSHHHHHHHHH
T ss_pred -CCHHHHHHHHH
Confidence 45666655554
No 213
>4e9j_A General secretion pathway protein D; homodimer, XCPQ, periplasmic domain, structural protein, PER space, outer membrane; 2.03A {Pseudomonas aeruginosa} PDB: 4ec5_A
Probab=26.60 E-value=75 Score=24.46 Aligned_cols=49 Identities=14% Similarity=0.283 Sum_probs=34.5
Q ss_pred hhHHHHHHHHhccCCeeEEEeCC-CCEEEEEee--cCHHHH---HHHHhc--CCceE
Q 048021 23 AWFSSMTKVLRKIKGASYTIDAE-EGMAYITGR--ANPRKL---LRKLQS--GKYAN 71 (143)
Q Consensus 23 gC~~kIkkaL~kI~GVsV~VDle-~~~VtV~G~--vdp~~L---l~aI~k--Gk~Ae 71 (143)
-=.+.+-+.|.++-|+++.+|.+ +|+|++... ++++.+ ++.|.+ |+...
T Consensus 29 ~~i~~vl~~la~~~g~nivvdp~V~G~VTl~~~~pv~~~~~~~~l~~vL~~~gl~~~ 85 (246)
T 4e9j_A 29 ADIREFIDQISEITGETFVVDPRVKGQVSVVSKAQLSLSEVYQLFLSVMSTHGFTVV 85 (246)
T ss_dssp EEHHHHHHHHHHHHCCCEEECTTCCCEEEEEEEEEEEHHHHHHHHHHHHHHTTEEEE
T ss_pred CCHHHHHHHHHHHhCCeEEECCCCceEEEEEeCCCCCHHHHHHHHHHHHHHCCCEEE
Confidence 33567777778888888888886 789999854 666665 555444 87553
No 214
>3k89_A Malonyl COA-ACP transacylase; bacterial blight, XOO0880, FABD, xanthomonas oryzae PV. ORYZ KACC10331, transferase; 1.60A {Xanthomonas oryzae PV} PDB: 3een_A 3r97_A*
Probab=26.54 E-value=1.3e+02 Score=23.76 Aligned_cols=53 Identities=21% Similarity=0.050 Sum_probs=37.8
Q ss_pred HHHHHHHHhccC--C-eeEEEeCCCCEEEEEeec-CHHHHHHHHhc-CCc-eEEeecCC
Q 048021 25 FSSMTKVLRKIK--G-ASYTIDAEEGMAYITGRA-NPRKLLRKLQS-GKY-ANLCWVSA 77 (143)
Q Consensus 25 ~~kIkkaL~kI~--G-VsV~VDle~~~VtV~G~v-dp~~Ll~aI~k-Gk~-Ael~~~~~ 77 (143)
...|++.|.... + |.+......+.++|.|.. .-+++.+.+++ |.. +..+.+..
T Consensus 142 ~~~~~~~~~~~~~~~~v~iA~~Nsp~~~visG~~~~l~~~~~~l~~~g~~~~~~L~v~~ 200 (314)
T 3k89_A 142 DAVVLEVCAEAAGSQVVVPANFNSPGQIVIGGDAAAVDRALALLAERGVRKAVKLAVSV 200 (314)
T ss_dssp HHHHHHHHHHHCTTSCEEEEEEEETTEEEEEEEHHHHHHHHHHHHHTTCCCEEECSCCC
T ss_pred HHHHHHHHHhcCCCCeEEEEEECCCCCEEEecCHHHHHHHHHHHHhcCCCeEEECCCCC
Confidence 456777777654 2 566666667889999975 56778888888 874 88777753
No 215
>2anr_A Neuro-oncological ventral antigen 1; protein-RNA complex, KH domain, hairpin, RNA-binding protein complex; HET: 5BU; 1.94A {Homo sapiens} PDB: 2ann_A*
Probab=26.52 E-value=94 Score=22.33 Aligned_cols=52 Identities=8% Similarity=0.185 Sum_probs=31.9
Q ss_pred eEEEEEEeecChhhH-----HHHHHHHhccCCeeEEEeCCC-------CEEEEEeecCHHHHHHHHh
Q 048021 11 MTCGLKVDTNDPAWF-----SSMTKVLRKIKGASYTIDAEE-------GMAYITGRANPRKLLRKLQ 65 (143)
Q Consensus 11 ~tvvlkV~m~C~gC~-----~kIkkaL~kI~GVsV~VDle~-------~~VtV~G~vdp~~Ll~aI~ 65 (143)
.++.|.|+-..-||. +.|++ |+..-|+.+.|+.+. +.|+|.|.. +.+.+|+.
T Consensus 104 ~~~~i~Vp~~~vg~iIGkgG~~Ik~-i~~~tga~I~i~~~~~~~~~~~~~v~I~G~~--~~v~~A~~ 167 (178)
T 2anr_A 104 NQVKIIVPNSTAGLIIGKGGATVKA-IMEQSGAWVQLSQKPDGINLQNRVVTVSGEP--EQNRKAVE 167 (178)
T ss_dssp GEEEEEEEHHHHHHHHCGGGHHHHH-HHHHSSCEEEECCCC----CCEEEEEEESSH--HHHHHHHH
T ss_pred eEEEEEEchhheeeeECCCcHHHHH-HHHHHCCEEEEeCCCCCCCCCceEEEEEcCH--HHHHHHHH
Confidence 456677764433433 34444 666678888887653 588888863 55555543
No 216
>1yz7_A Probable translation initiation factor 2 alpha subunit; helical domain, alpha-beta domain; 2.26A {Pyrococcus abyssi}
Probab=26.51 E-value=1.9e+02 Score=21.97 Aligned_cols=26 Identities=12% Similarity=0.158 Sum_probs=18.1
Q ss_pred CceEEEEEEeecChhh--HHHHHHHHhc
Q 048021 9 AKMTCGLKVDTNDPAW--FSSMTKVLRK 34 (143)
Q Consensus 9 ~~~tvvlkV~m~C~gC--~~kIkkaL~k 34 (143)
+..++.--|+++|-++ ...|++||.+
T Consensus 87 q~vkIra~ieltc~~~dGIe~IK~AL~~ 114 (188)
T 1yz7_A 87 PTVTIDAEFEITVPKPNGVEIIKEALIR 114 (188)
T ss_dssp CCEEEEEEEEEECCSTTHHHHHHHHHHH
T ss_pred CceEEEEEEEEEeCCCchHHHHHHHHHH
Confidence 3445666678888555 6789999864
No 217
>3mvn_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamayl-M diaminopimelate ligase; structural genomics, MCSG, PSI-2; 1.90A {Haemophilus ducreyi}
Probab=26.43 E-value=61 Score=23.19 Aligned_cols=42 Identities=12% Similarity=0.030 Sum_probs=14.6
Q ss_pred hhHHHHHHHHhccCCe--eEEEeC--CCCEEEEEeecCHHHHHHHH
Q 048021 23 AWFSSMTKVLRKIKGA--SYTIDA--EEGMAYITGRANPRKLLRKL 64 (143)
Q Consensus 23 gC~~kIkkaL~kI~GV--sV~VDl--e~~~VtV~G~vdp~~Ll~aI 64 (143)
.-+..|.++|+++.|| .+++=. ..-+|.+.+.-+|..+..+|
T Consensus 9 ~~~~~i~~~L~~f~gv~~R~E~i~~~~g~~vi~DyaHnP~si~a~l 54 (163)
T 3mvn_A 9 SGVDLGTENLYFQSNAQRRLEVKGVVNNITVYDDFAHHPTAITATI 54 (163)
T ss_dssp ------------------CCEEEEEETTEEEEEECCCSHHHHHHHH
T ss_pred chHHHHHHHHHhCCCCCCCeEEEecCCCcEEEEcCCCCHHHHHHHH
Confidence 3467899999999999 355432 23356667767887655544
No 218
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=26.40 E-value=84 Score=19.48 Aligned_cols=53 Identities=13% Similarity=0.102 Sum_probs=32.9
Q ss_pred EEEEE-eecChhhHHHHHHHHhccCCe-eEEEeCC------CCEEEEEeecCHHHHHHHHhc
Q 048021 13 CGLKV-DTNDPAWFSSMTKVLRKIKGA-SYTIDAE------EGMAYITGRANPRKLLRKLQS 66 (143)
Q Consensus 13 vvlkV-~m~C~gC~~kIkkaL~kI~GV-sV~VDle------~~~VtV~G~vdp~~Ll~aI~k 66 (143)
.+|-| ++.-.-....|++.+.+.-.| +|.+-.+ .+...|+= .+++...++|+.
T Consensus 17 ~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f-~~~~~A~~A~~~ 77 (94)
T 2e5h_A 17 STVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILF-LDKDSAQNCTRA 77 (94)
T ss_dssp TSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEE-SCHHHHHHHHHH
T ss_pred CEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEE-CCHHHHHHHHHH
Confidence 34445 567777788899999888667 6777443 23444442 355555666643
No 219
>2jzx_A Poly(RC)-binding protein 2; PCBP2, KH domains, RNA binding, DNA-binding, nucleus, phosph ribonucleoprotein, RNA-binding, RNA binding protein; NMR {Homo sapiens}
Probab=26.37 E-value=1.7e+02 Score=20.48 Aligned_cols=44 Identities=20% Similarity=0.308 Sum_probs=25.2
Q ss_pred ceEEEEEEeecChhhH-----HHHHHHHhccCCeeEEEeCCC---CEEEEEee
Q 048021 10 KMTCGLKVDTNDPAWF-----SSMTKVLRKIKGASYTIDAEE---GMAYITGR 54 (143)
Q Consensus 10 ~~tvvlkV~m~C~gC~-----~kIkkaL~kI~GVsV~VDle~---~~VtV~G~ 54 (143)
+.++.|.|+-..-|.. ..|++ |+..-|+.+.|+... ..|+|.|.
T Consensus 4 ~~~~~~~vp~~~~g~iIGkgG~~Ik~-i~~~tg~~I~i~~~~~~~r~v~I~G~ 55 (160)
T 2jzx_A 4 TLTIRLLMHGKEVGSIIGKKGESVKK-MREESGARINISEGNCPERIITLAGP 55 (160)
T ss_dssp EEEEEEEEEHHHHHHHHCGGGHHHHH-HHHHHCSEEEEECCTTTEEEEEEEEE
T ss_pred cEEEEEEEchhheeeeECCCcHHHHH-HHHHHCCEEEEcCCCCCceEEEEEeC
Confidence 3445566653322222 34444 455567888887653 38999997
No 220
>2yvs_A Glycolate oxidase subunit GLCE; oxidoreductase; 2.00A {Thermus thermophilus}
Probab=26.32 E-value=50 Score=25.44 Aligned_cols=30 Identities=17% Similarity=0.315 Sum_probs=26.9
Q ss_pred EEEeCCCCEEEEEeecCHHHHHHHHhc-CCc
Q 048021 40 YTIDAEEGMAYITGRANPRKLLRKLQS-GKY 69 (143)
Q Consensus 40 V~VDle~~~VtV~G~vdp~~Ll~aI~k-Gk~ 69 (143)
++||.++++|+|.+-+.-.+|.+++.+ |..
T Consensus 1 l~vd~~~~~v~V~aGv~l~~L~~~l~~~Gl~ 31 (219)
T 2yvs_A 1 MEVHAADQYLVAPGEADLLEVHARLAGTGLF 31 (219)
T ss_dssp CEEETTTTEEEEETTCCHHHHHHHHTTTTEE
T ss_pred CeEcCCCCEEEEcCCCcHHHHHHHHHHcCCE
Confidence 478999999999988999999999998 873
No 221
>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}
Probab=26.32 E-value=38 Score=22.45 Aligned_cols=65 Identities=9% Similarity=0.020 Sum_probs=42.6
Q ss_pred EEEEEEeecChhhHHHHHHHH-hccCCeeEEEeCCCCEEEEEeec--CHHHHHHHHh-c-CCceEEeecCCCCC
Q 048021 12 TCGLKVDTNDPAWFSSMTKVL-RKIKGASYTIDAEEGMAYITGRA--NPRKLLRKLQ-S-GKYANLCWVSAGNQ 80 (143)
Q Consensus 12 tvvlkV~m~C~gC~~kIkkaL-~kI~GVsV~VDle~~~VtV~G~v--dp~~Ll~aI~-k-Gk~Ael~~~~~~~s 80 (143)
+++|.|+..-..-+..|++.| +..+|+ ..+..++...|++ |...|.+.=- . |-...+...++-+.
T Consensus 13 ~~~i~v~v~~~~TV~~lK~~I~~~~~gi----p~~~QrLi~~Gk~L~D~~tL~~y~I~~~~stl~v~~~~~~~~ 82 (87)
T 2lxa_A 13 KFSIEHDFSPSDTILQIKQHLISEEKAS----HISEIKLLLKGKVLHDNLFLSDLKVTPANSTITVMIKPNLEH 82 (87)
T ss_dssp CEECCEECCTTCBHHHHHHHHHHTTSCS----SSTTEEEEETTEECCTTCBHHHHCCCGGGCEEEEEECCCCCC
T ss_pred EEEEEEcCCCCCcHHHHHHHHHHHhcCC----ChHHEEEEECCEECcCcCCHHHcCCCCCCCEEEEEcCCCccc
Confidence 455555555778889999999 888875 4567777777864 4444444322 3 66777777765544
No 222
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=26.24 E-value=1.2e+02 Score=18.94 Aligned_cols=73 Identities=14% Similarity=0.149 Sum_probs=43.8
Q ss_pred CCCCCceEEEEEE-eecChhhHHHHHHHHhccCCe-eEEEeCC------CCEEEEEeecCHHHHHHHHh----c--CCce
Q 048021 5 SSSSAKMTCGLKV-DTNDPAWFSSMTKVLRKIKGA-SYTIDAE------EGMAYITGRANPRKLLRKLQ----S--GKYA 70 (143)
Q Consensus 5 s~~s~~~tvvlkV-~m~C~gC~~kIkkaL~kI~GV-sV~VDle------~~~VtV~G~vdp~~Ll~aI~----k--Gk~A 70 (143)
+++......+|-| ++.-.--...|++.+.+.-.| +|.+-.+ .+-..|+= .+++...+||+ . |+..
T Consensus 3 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f-~~~~~a~~A~~~~~~~~~g~~l 81 (99)
T 2dgs_A 3 SGSSGSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITF-EDEQSVDQAVNMHFHDIMGKKV 81 (99)
T ss_dssp CCCCCSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEE-SSHHHHHHHHHHCCCBSSSCBC
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEE-CCHHHHHHHHHhCCCEECCeEE
Confidence 3344444455555 567677788899999998777 6777433 23444442 34555555554 2 7777
Q ss_pred EEeecCCC
Q 048021 71 NLCWVSAG 78 (143)
Q Consensus 71 el~~~~~~ 78 (143)
.+....+.
T Consensus 82 ~V~~a~~~ 89 (99)
T 2dgs_A 82 EVKRAEPR 89 (99)
T ss_dssp EEEECCCC
T ss_pred EEEECCCC
Confidence 76666543
No 223
>1nwa_A Peptide methionine sulfoxide reductase MSRA; oxidoreductase, product complex, structural genomics, PSI, protein structure initiative; 1.50A {Mycobacterium tuberculosis} SCOP: d.58.28.1
Probab=26.11 E-value=91 Score=24.43 Aligned_cols=28 Identities=18% Similarity=0.259 Sum_probs=21.6
Q ss_pred eEEEEEEeecChhhHHHHHHHHhccCCe-eEEEe
Q 048021 11 MTCGLKVDTNDPAWFSSMTKVLRKIKGA-SYTID 43 (143)
Q Consensus 11 ~tvvlkV~m~C~gC~~kIkkaL~kI~GV-sV~VD 43 (143)
.+++|. +||-=-+++.+.+++|| ++.+=
T Consensus 26 ~~a~fa-----gGCFWg~E~~F~~l~GV~~t~vG 54 (203)
T 1nwa_A 26 QKAILA-----GGCFWGLQDLIRNQPGVVSTRVG 54 (203)
T ss_dssp EEEEEE-----ESCHHHHHHHHTTSTTEEEEEEE
T ss_pred ceEEEe-----cCCeeeeHHHHhcCCCeEEEEee
Confidence 567777 67777778889999999 77663
No 224
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=25.99 E-value=1.3e+02 Score=19.00 Aligned_cols=63 Identities=10% Similarity=0.070 Sum_probs=36.0
Q ss_pred EEEEE-eecChhhHHHHH----HHHhccCCe-eEEEeCCC---CEEEEEeecCHHHHHHHHhc-------CCceEEeecC
Q 048021 13 CGLKV-DTNDPAWFSSMT----KVLRKIKGA-SYTIDAEE---GMAYITGRANPRKLLRKLQS-------GKYANLCWVS 76 (143)
Q Consensus 13 vvlkV-~m~C~gC~~kIk----kaL~kI~GV-sV~VDle~---~~VtV~G~vdp~~Ll~aI~k-------Gk~Ael~~~~ 76 (143)
+.|-| ++.-.-....|+ +.+.+.-.| +|.|-.+. +-.-|+= .+++...+||+. |+...+-...
T Consensus 10 ~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~rg~afV~f-~~~~~A~~Ai~~l~g~~~~gr~l~V~~a~ 88 (96)
T 2dgx_A 10 ADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDYQLKAVVQM-ENLQDAIGAVNSLHRYKIGSKKILVSLAT 88 (96)
T ss_dssp EEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCSTTCCEEEEE-SSHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred CEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCCCeEEEEEE-CCHHHHHHHHHHhCCCEECCeEEEEEEcC
Confidence 34444 577777788888 777776557 67776542 3333331 245555555553 5555555443
No 225
>4go7_X Aspartokinase; transferase; 2.00A {Mycobacterium tuberculosis} PDB: 4go5_X
Probab=25.99 E-value=1.7e+02 Score=22.28 Aligned_cols=66 Identities=15% Similarity=0.169 Sum_probs=41.0
Q ss_pred ceEEEEEEeec-ChhhHHHHHHHHhccCCeeEEEeCCCCEEEEEeec------CHHHHHHHHhc-CCceEEeec
Q 048021 10 KMTCGLKVDTN-DPAWFSSMTKVLRKIKGASYTIDAEEGMAYITGRA------NPRKLLRKLQS-GKYANLCWV 75 (143)
Q Consensus 10 ~~tvvlkV~m~-C~gC~~kIkkaL~kI~GVsV~VDle~~~VtV~G~v------dp~~Ll~aI~k-Gk~Ael~~~ 75 (143)
...+.|.|.-. .....+.+++...++....+.++..=.+|.|.|.. =..++.++|.+ |-.+..++.
T Consensus 78 ~~~~sftv~~~d~~~~~~~l~~~~~~~~~~~v~~~~~iakVSvVG~GM~~~~GVaak~F~aLa~~~INI~mIst 151 (200)
T 4go7_X 78 KTDITFTCSRDVGPAAVEKLDSLRNEIGFSQLLYDDHIGKVSLIGAGMRSHPGVTATFCEALAAVGVNIELIST 151 (200)
T ss_dssp EEEEEEEEEGGGHHHHHHHHHTTHHHHCCSEEEEECCEEEEEEEEESCTTCHHHHHHHHHHHHHTTCCCCEEEE
T ss_pred ceEEEEecchhhHHHHHHHHHHHHhhhceeeEEEecCeeeeeeeccccccCCCcHHHHHHHHHHCCCCEEEEEc
Confidence 33455666543 23333333333333333368888777788888852 26788899988 999888874
No 226
>4dgh_A Sulfate permease family protein; STAS domain, anion exchange, membrane, transport protein; HET: MSE; 1.90A {Vibrio cholerae} PDB: 3mgl_A*
Probab=25.97 E-value=49 Score=22.45 Aligned_cols=68 Identities=7% Similarity=0.077 Sum_probs=41.8
Q ss_pred CceEEEEEEeec-ChhhHHHHHHHHhcc-CCe-eEEEeCCCCEEEEE--eecCHHHHHHHHhc-CCceEEeecCC
Q 048021 9 AKMTCGLKVDTN-DPAWFSSMTKVLRKI-KGA-SYTIDAEEGMAYIT--GRANPRKLLRKLQS-GKYANLCWVSA 77 (143)
Q Consensus 9 ~~~tvvlkV~m~-C~gC~~kIkkaL~kI-~GV-sV~VDle~~~VtV~--G~vdp~~Ll~aI~k-Gk~Ael~~~~~ 77 (143)
.....++++++. .-+.+..+++.|..+ ++. .|.+|+..=. .+. |-.--..+.+.+++ |.++.++++.+
T Consensus 18 ~~~v~v~~~~G~L~f~~a~~~~~~l~~~~~~~~~vvlDls~v~-~iDssgl~~L~~~~~~~~~~g~~l~l~~~~~ 91 (130)
T 4dgh_A 18 PRELAVYALEGPFFFAAAETFERVMGSIQETPQILILRLKWVP-FMDITGIQTLEEMIQSFHKRGIKVLISGANS 91 (130)
T ss_dssp CTTEEEEECCSSCCHHHHHHHHHHHHHSSSCCSEEEEECTTCC-CCCHHHHHHHHHHHHHHHTTTCEEEEECCCH
T ss_pred CCCEEEEEEeeeEeehhHHHHHHHHHHhccCCCEEEEECCCCC-cccHHHHHHHHHHHHHHHHCCCEEEEEcCCH
Confidence 345677888763 566778888888876 444 4677776411 111 22234455566666 88888887754
No 227
>2dtj_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; HET: CIT; 1.58A {Corynebacterium glutamicum} PDB: 3aaw_B* 3ab2_B 3ab4_B*
Probab=25.70 E-value=1.1e+02 Score=22.36 Aligned_cols=61 Identities=11% Similarity=0.162 Sum_probs=39.1
Q ss_pred eEEEEEEeecChhhHHHHHHHHhcc---CCe-eEEEeCCCCEEEEEeec---C---HHHHHHHHhc-CCceEEee
Q 048021 11 MTCGLKVDTNDPAWFSSMTKVLRKI---KGA-SYTIDAEEGMAYITGRA---N---PRKLLRKLQS-GKYANLCW 74 (143)
Q Consensus 11 ~tvvlkV~m~C~gC~~kIkkaL~kI---~GV-sV~VDle~~~VtV~G~v---d---p~~Ll~aI~k-Gk~Ael~~ 74 (143)
..+.|.|.-. . ..+..++|+++ -|. .++++.+-.+|.|.|.. . ..++.++|.+ |-.++.++
T Consensus 59 ~~isf~v~~~--d-~~~a~~~l~~~~~~~~~~~v~~~~~~a~VsvVG~gm~~~~Gv~arif~aLa~~~InI~~is 130 (178)
T 2dtj_A 59 TDITFTCPRS--D-GRRAMEILKKLQVQGNWTNVLYDDQVGKVSLVGAGMKSHPGVTAEFMEALRDVNVNIELIS 130 (178)
T ss_dssp EEEEEEEEHH--H-HHHHHHHHHTTTTTTTCSEEEEESCEEEEEEEEECCTTCHHHHHHHHHHHHHTTCCCCEEE
T ss_pred eEEEEEEccc--c-HHHHHHHHHHHHHhcCCCeEEEeCCeEEEEEEcCCcccCccHHHHHHHHHHHCCCCEEEEE
Confidence 3455665531 1 13445556553 234 57887777788888852 2 4688888988 99998876
No 228
>2cvi_A 75AA long hypothetical regulatory protein ASNC; structural genomics, unknown function; 1.50A {Pyrococcus horikoshii} PDB: 2z4p_A 2e1a_A
Probab=25.54 E-value=1.3e+02 Score=18.79 Aligned_cols=51 Identities=10% Similarity=0.019 Sum_probs=32.1
Q ss_pred EEEEeecChhhHHHHHHHHhccCCe-e-EEEeCCCCEEEEEeecCHHHHHHHHh
Q 048021 14 GLKVDTNDPAWFSSMTKVLRKIKGA-S-YTIDAEEGMAYITGRANPRKLLRKLQ 65 (143)
Q Consensus 14 vlkV~m~C~gC~~kIkkaL~kI~GV-s-V~VDle~~~VtV~G~vdp~~Ll~aI~ 65 (143)
.+.|.+.-+.+ ..+.++|+++|+| + ..+.-+.+-+..--..|.+.|.+.|.
T Consensus 5 ~v~v~~~~~~~-~~~~~~l~~~peV~e~~~vtG~~D~ll~v~~~d~~~l~~~i~ 57 (83)
T 2cvi_A 5 FILMVTAAGKE-REVMEKLLAMPEVKEAYVVYGEYDLIVKVETDTLKDLDQFIT 57 (83)
T ss_dssp EEEEEECTTCH-HHHHHHHHTSTTEEEEEECBSSCSEEEEEEESSHHHHHHHHH
T ss_pred EEEEEEcCCCH-HHHHHHHhCCCCeeEEEEEcccCCEEEEEEECCHHHHHHHHH
Confidence 34444433344 6899999999999 6 45555555444444457777777665
No 229
>3oss_D Type 2 secretion system, secretin GSPD; general secretory pathway, HR domain, lanthanide-B TAG, protein transport; 2.63A {Escherichia coli}
Probab=25.49 E-value=1.7e+02 Score=21.70 Aligned_cols=56 Identities=14% Similarity=0.124 Sum_probs=37.9
Q ss_pred ceEEEEEEe-ecChhhHHHHHHHHhccCCeeEEEeCCCCEEEEEeec-CHHHHHHHHh
Q 048021 10 KMTCGLKVD-TNDPAWFSSMTKVLRKIKGASYTIDAEEGMAYITGRA-NPRKLLRKLQ 65 (143)
Q Consensus 10 ~~tvvlkV~-m~C~gC~~kIkkaL~kI~GVsV~VDle~~~VtV~G~v-dp~~Ll~aI~ 65 (143)
..+-+|.++ ..-..=++.|+..|..-.+-+|.+|...+.+.|+|.. .-++|.+.|+
T Consensus 119 l~t~v~~L~y~~A~el~~~L~~lls~~~~g~v~~d~~tN~Liv~d~~~~i~~i~~lI~ 176 (181)
T 3oss_D 119 MVTKVVPVRNVSVRELAPILRQMIDSAGSGNVVNYDPSNVIMLTGRASVVERLTEVIQ 176 (181)
T ss_dssp EEEEEEECSSSCGGGGHHHHHHHHHHHCTTCEEEEETTTEEEEEEEHHHHHHHHHHHH
T ss_pred cEEEEEEeecCCHHHHHHHHHHhcCcccCceEEEeCCCCEEEEEeCHHHHHHHHHHHH
Confidence 345667775 5677777777776655433479999999999999975 3444444443
No 230
>1wik_A Thioredoxin-like protein 2; picot homology 2 domain, picot protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1
Probab=25.34 E-value=94 Score=20.35 Aligned_cols=26 Identities=19% Similarity=0.125 Sum_probs=18.5
Q ss_pred ecChhhHHHHHHHHhccCCee-EEEeCCC
Q 048021 19 TNDPAWFSSMTKVLRKIKGAS-YTIDAEE 46 (143)
Q Consensus 19 m~C~gC~~kIkkaL~kI~GVs-V~VDle~ 46 (143)
-.|+.|. ++++.|..+ ||. ..+|+.+
T Consensus 28 ~~Cp~C~-~ak~~L~~~-~i~~~~vdi~~ 54 (109)
T 1wik_A 28 AKCGFSK-QILEILNST-GVEYETFDILE 54 (109)
T ss_dssp CCSSTHH-HHHHHHHHT-CSCEEEEESSS
T ss_pred CCCchHH-HHHHHHHHc-CCCeEEEECCC
Confidence 5899998 667778775 774 5556554
No 231
>3tqe_A Malonyl-COA-[acyl-carrier-protein] transacylase; fatty acid/phospholipid metabolism, transferase; HET: MSE; 1.50A {Coxiella burnetii}
Probab=25.26 E-value=1.1e+02 Score=24.26 Aligned_cols=53 Identities=13% Similarity=0.065 Sum_probs=36.6
Q ss_pred HHHHHHHHhccC---CeeEEEeCCCCEEEEEeec-CHHHHHHHHhc-CCc-eEEeecCC
Q 048021 25 FSSMTKVLRKIK---GASYTIDAEEGMAYITGRA-NPRKLLRKLQS-GKY-ANLCWVSA 77 (143)
Q Consensus 25 ~~kIkkaL~kI~---GVsV~VDle~~~VtV~G~v-dp~~Ll~aI~k-Gk~-Ael~~~~~ 77 (143)
...|++.|.... .|.+......+.++|.|.. .-+++.+.+++ |.. +..+.+..
T Consensus 144 ~~~~~~~~~~~~~~~~v~iA~~Nsp~~~VisG~~~~l~~~~~~l~~~g~~~~~~L~v~~ 202 (316)
T 3tqe_A 144 EAEIESICENAALGQVVQPANLNSTDQTVISGHSEAVDRALNMAKTEGAKIAKRIPVSV 202 (316)
T ss_dssp HHHHHHHHHHHHTTSCEEEEEEEETTEEEEEEEHHHHHHHHHHHHHTTCSEEEECSCSC
T ss_pred HHHHHHHHHhcCCCCeEEEEEEcCCCcEEEEecHHHHHHHHHHHHhcCCceEEEccCCC
Confidence 456666665542 3576666677889999975 56678888888 875 77777643
No 232
>2h9z_A Hypothetical protein HP0495; feredoxin-like (beta-alpha-beta-BETA-alpha-beta), structural genomics, unknown function; NMR {Helicobacter pylori} SCOP: d.58.54.2 PDB: 2joq_A
Probab=25.25 E-value=1.3e+02 Score=19.92 Aligned_cols=35 Identities=3% Similarity=0.102 Sum_probs=28.9
Q ss_pred CCCCCceEEEEEEeecChhhHHHHHHHHhccCCee
Q 048021 5 SSSSAKMTCGLKVDTNDPAWFSSMTKVLRKIKGAS 39 (143)
Q Consensus 5 s~~s~~~tvvlkV~m~C~gC~~kIkkaL~kI~GVs 39 (143)
||...-..+++.|..+...=...|=++|.+++||.
T Consensus 49 Ss~GkY~Svtv~i~a~s~eq~~~iY~~L~~~~~Vk 83 (86)
T 2h9z_A 49 SKNAKFYSFNVSMEVSNESERNEIFQKISQLDKVV 83 (86)
T ss_dssp SCCSSCEEEEEEEECCSHHHHHHHHHHHTCSSCEE
T ss_pred CCCCeEEEEEEEEEECCHHHHHHHHHHHhcCCCEE
Confidence 55566667888888888888999999999999984
No 233
>2khp_A Glutaredoxin; thioredoxin type domain, ssgcid, electron TRAN structural genomics, seattle structural genomics center for infectious disease; NMR {Brucella melitensis}
Probab=24.80 E-value=97 Score=19.08 Aligned_cols=26 Identities=27% Similarity=0.292 Sum_probs=18.0
Q ss_pred eecChhhHHHHHHHHhccCCee-EEEeCC
Q 048021 18 DTNDPAWFSSMTKVLRKIKGAS-YTIDAE 45 (143)
Q Consensus 18 ~m~C~gC~~kIkkaL~kI~GVs-V~VDle 45 (143)
.-.|+.|. +++..|... |+. ..+|.+
T Consensus 13 ~~~C~~C~-~~~~~L~~~-~i~~~~~di~ 39 (92)
T 2khp_A 13 RPGCPYCA-RAKALLARK-GAEFNEIDAS 39 (92)
T ss_dssp CTTCHHHH-HHHHHHHHT-TCCCEEEEST
T ss_pred CCCChhHH-HHHHHHHHc-CCCcEEEECC
Confidence 45899998 677788774 674 455554
No 234
>1s3c_A Arsenate reductase; ARSC, arsenite, oxidoreductase; 1.25A {Escherichia coli} PDB: 1sd9_A 1i9d_A 1j9b_A 1sd8_A 1jzw_A* 1sk1_A* 1sjz_A* 1sk0_A* 1sk2_A 1s3d_A
Probab=24.71 E-value=78 Score=22.59 Aligned_cols=44 Identities=14% Similarity=0.149 Sum_probs=30.6
Q ss_pred ecChhhHHHHHHHHhccCCee-EEEeCCCCEEEEEeecCHHHHHHHHhc-CCce
Q 048021 19 TNDPAWFSSMTKVLRKIKGAS-YTIDAEEGMAYITGRANPRKLLRKLQS-GKYA 70 (143)
Q Consensus 19 m~C~gC~~kIkkaL~kI~GVs-V~VDle~~~VtV~G~vdp~~Ll~aI~k-Gk~A 70 (143)
-.|..|. ++++.|.. .||. -.+|..+. ..+.+.|.+.+.+ |..+
T Consensus 10 p~C~~cr-kak~~L~~-~gi~~~~idi~~~------~~~~~eL~~~~~~~g~p~ 55 (141)
T 1s3c_A 10 PASGTSR-NTLEMIRN-SGTEPTIILYLEN------PPSRDELVKLIADMGISV 55 (141)
T ss_dssp TTCHHHH-HHHHHHHH-TTCCCEEECTTTS------CCCHHHHHHHHHHHTSCH
T ss_pred CCChHHH-HHHHHHHH-cCCCEEEEECCCC------CccHHHHHHHhcccCCCH
Confidence 4899997 56666766 7885 56676642 2567788888877 7754
No 235
>3aab_A Putative uncharacterized protein ST1653; alpha-crystallin domain, chaperone; 1.85A {Sulfolobus tokodaii} PDB: 3aac_A
Probab=24.50 E-value=34 Score=23.62 Aligned_cols=24 Identities=8% Similarity=0.059 Sum_probs=18.6
Q ss_pred ccCCe---eEEEeCCC-CEEEEEeecCH
Q 048021 34 KIKGA---SYTIDAEE-GMAYITGRANP 57 (143)
Q Consensus 34 kI~GV---sV~VDle~-~~VtV~G~vdp 57 (143)
.|+|+ +++|..++ +.++|+|....
T Consensus 41 ~lPG~~~edi~V~v~~~~~L~I~g~~~~ 68 (123)
T 3aab_A 41 DLAGFNKEKIKARVSGQNELIIEAEREI 68 (123)
T ss_dssp ECCSCCGGGCEEEEETTTEEEEEEECCC
T ss_pred ECCCCCHHHEEEEEeCCCEEEEEEEEec
Confidence 56887 28888888 99999997543
No 236
>3r8s_H 50S ribosomal protein L9; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_F 1p86_F 1vs8_H 1vs6_H 2aw4_H 2awb_H 2gya_F 2gyc_F 1vt2_H 2i2v_H 2j28_H 2i2t_H* 2qao_H* 2qba_H* 2qbc_H* 2qbe_H 2qbg_H 2qbi_H* 2qbk_H* 2qov_H ...
Probab=24.43 E-value=1.8e+02 Score=21.34 Aligned_cols=36 Identities=25% Similarity=0.397 Sum_probs=25.3
Q ss_pred ccCCe-eEEEeCC---CCEEEEEeecCHHHHHHHHhc-CCceE
Q 048021 34 KIKGA-SYTIDAE---EGMAYITGRANPRKLLRKLQS-GKYAN 71 (143)
Q Consensus 34 kI~GV-sV~VDle---~~~VtV~G~vdp~~Ll~aI~k-Gk~Ae 71 (143)
+|+|+ .++|..+ +++ +-|.+.+..|.++|++ |..+.
T Consensus 71 ~L~~~~~v~i~~k~g~~gk--lfGSVt~~dIa~al~~~g~~id 111 (149)
T 3r8s_H 71 KINALETVTIASKAGDEGK--LFGSIGTRDIADAVTAAGVEVA 111 (149)
T ss_dssp HHHTTCCEEEEECBCTTSE--EEEEECHHHHHHHHHTTSCCCC
T ss_pred HhcCCcEEEEEEEcCCCCc--eEcccCHHHHHHHHHHcCCcee
Confidence 44554 4555443 344 4689999999999998 98765
No 237
>3gyk_A 27KDA outer membrane protein; APC61738.2, silicibacter pomeroyi DSS-3, thioredoxin-like, oxidoreductase, structural genomics, PSI-2; HET: MSE; 1.76A {Silicibacter pomeroyi}
Probab=24.43 E-value=1.4e+02 Score=20.60 Aligned_cols=29 Identities=17% Similarity=0.029 Sum_probs=16.4
Q ss_pred eEEEEEEeecChhhHHHH---HHHHhccCCee
Q 048021 11 MTCGLKVDTNDPAWFSSM---TKVLRKIKGAS 39 (143)
Q Consensus 11 ~tvvlkV~m~C~gC~~kI---kkaL~kI~GVs 39 (143)
.+++.=.+..|+.|.+-- ++.+++.++|.
T Consensus 24 v~i~~f~d~~Cp~C~~~~~~l~~l~~~~~~v~ 55 (175)
T 3gyk_A 24 VTVVEFFDYNCPYCRRAMAEVQGLVDADPNVR 55 (175)
T ss_dssp EEEEEEECTTCHHHHHHHHHHHHHHHHCTTEE
T ss_pred EEEEEEECCCCccHHHHHHHHHHHHHhCCCEE
Confidence 344444567999999743 33333334453
No 238
>4gwb_A Peptide methionine sulfoxide reductase MSRA 3; structural genomics, protein structure initiative, nysgrc, R PSI-biology; 1.20A {Sinorhizobium meliloti}
Probab=24.36 E-value=82 Score=23.88 Aligned_cols=28 Identities=21% Similarity=0.343 Sum_probs=21.3
Q ss_pred eEEEEEEeecChhhHHHHHHHHhccCCe-eEEEe
Q 048021 11 MTCGLKVDTNDPAWFSSMTKVLRKIKGA-SYTID 43 (143)
Q Consensus 11 ~tvvlkV~m~C~gC~~kIkkaL~kI~GV-sV~VD 43 (143)
.+++|. +||-=-+++.+.+|+|| ++.+=
T Consensus 3 e~A~fa-----gGCFWg~E~~f~~l~GV~~t~~G 31 (168)
T 4gwb_A 3 KRAVLA-----GGCFWGMQDLIRKLPGVIETRVG 31 (168)
T ss_dssp EEEEEE-----ESCHHHHHHHHTTSTTEEEEEEE
T ss_pred eEEEEE-----ccCccchHHHHhcCCCeEEEEEE
Confidence 356666 67777778899999999 77663
No 239
>2ctm_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=24.36 E-value=74 Score=21.27 Aligned_cols=52 Identities=12% Similarity=0.215 Sum_probs=28.1
Q ss_pred eEEEEEEeecChhhH-----HHHHHHHhccCCeeEEEeCCC----CEEEEEeecCHHHHHHHHh
Q 048021 11 MTCGLKVDTNDPAWF-----SSMTKVLRKIKGASYTIDAEE----GMAYITGRANPRKLLRKLQ 65 (143)
Q Consensus 11 ~tvvlkV~m~C~gC~-----~kIkkaL~kI~GVsV~VDle~----~~VtV~G~vdp~~Ll~aI~ 65 (143)
.+.+|+|+-..-++. +.|++..+. -|+.+.|+-+. ++|+|.|. ++.+.+|++
T Consensus 17 vt~~i~Ip~~~ig~IIG~gG~~Ir~I~e~-tg~~I~i~~~g~~~~~~V~I~G~--~e~v~~A~~ 77 (95)
T 2ctm_A 17 VSEDVPLDHRVHARIIGARGKAIRKIMDE-FKVDIRFPQSGAPDPNCVTVTGL--PENVEEAID 77 (95)
T ss_dssp CCEEEECCTTTHHHHHCSSSCHHHHHHHH-HTCEEECCCTTCSCTTEEEEESC--HHHHHHHHH
T ss_pred EEEEEEECHHHccccCCCCcchHHHHHHH-HCCeEEecCCCCCCCcEEEEEcC--HHHHHHHHH
Confidence 355666653222221 244444333 47777775442 28999986 355555543
No 240
>3ipz_A Monothiol glutaredoxin-S14, chloroplastic; electron transport, PL redox-active center, transit peptide, transport, oxidoreduc; 2.40A {Arabidopsis thaliana} PDB: 2lku_A
Probab=24.34 E-value=1.4e+02 Score=19.71 Aligned_cols=24 Identities=4% Similarity=0.033 Sum_probs=16.6
Q ss_pred cChhhHHHHHHHHhccCCee-EEEeCC
Q 048021 20 NDPAWFSSMTKVLRKIKGAS-YTIDAE 45 (143)
Q Consensus 20 ~C~gC~~kIkkaL~kI~GVs-V~VDle 45 (143)
.|+-|. ++++.|.+. ||. ..+|+.
T Consensus 32 ~Cp~C~-~ak~~L~~~-gi~~~~~dI~ 56 (109)
T 3ipz_A 32 MCGFSN-TVVQILKNL-NVPFEDVNIL 56 (109)
T ss_dssp SSHHHH-HHHHHHHHT-TCCCEEEEGG
T ss_pred CChhHH-HHHHHHHHc-CCCcEEEECC
Confidence 699998 677778774 773 445554
No 241
>2klr_A Alpha-crystallin B chain; protein, dimer, oligomer, heterogeneity, intermolecular INTE chaperone, SHSP, human, small heat-shock protein, cataract; NMR {Homo sapiens} PDB: 2ygd_A
Probab=24.25 E-value=41 Score=25.20 Aligned_cols=22 Identities=9% Similarity=0.199 Sum_probs=17.5
Q ss_pred ccCCe---eEEEeCCCCEEEEEeec
Q 048021 34 KIKGA---SYTIDAEEGMAYITGRA 55 (143)
Q Consensus 34 kI~GV---sV~VDle~~~VtV~G~v 55 (143)
.++|+ +|+|.++++.++|+|+.
T Consensus 80 dlPG~~~edI~V~v~~~~L~I~g~~ 104 (175)
T 2klr_A 80 DVKHFSPEELKVKVLGDVIEVHGKH 104 (175)
T ss_dssp CCSSCCGGGEEEEEETTEEEEEEEE
T ss_pred ECCCCChHHEEEEEECCEEEEEEEE
Confidence 46787 28888889999999964
No 242
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=24.04 E-value=1e+02 Score=21.04 Aligned_cols=52 Identities=17% Similarity=0.149 Sum_probs=31.3
Q ss_pred EEEEE-eecChhhHHHHHHHHhccCCe-eEEEeCC------CCEEEEEeecCHHHHHHHHh
Q 048021 13 CGLKV-DTNDPAWFSSMTKVLRKIKGA-SYTIDAE------EGMAYITGRANPRKLLRKLQ 65 (143)
Q Consensus 13 vvlkV-~m~C~gC~~kIkkaL~kI~GV-sV~VDle------~~~VtV~G~vdp~~Ll~aI~ 65 (143)
.+|-| ++.-.--...|++.+.+.-.| +|.+-.+ .+-..|+= .+++...+||+
T Consensus 47 ~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F-~~~~~A~~Ai~ 106 (129)
T 2kxn_B 47 CCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYF-ENVDDAKEAKE 106 (129)
T ss_dssp SCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEE-SCHHHHHHHHH
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEE-CCHHHHHHHHH
Confidence 34445 566667788899999988667 6766432 23444442 24455555555
No 243
>3ewl_A Uncharacterized conserved protein BF1870; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; 2.00A {Bacteroides fragilis}
Probab=24.01 E-value=1.5e+02 Score=19.18 Aligned_cols=47 Identities=11% Similarity=0.074 Sum_probs=28.9
Q ss_pred eecChhhHHH---------HHHHHhccCCee-EEEeCCCCEEEEEeecCHHHHHHHHhc-CCceEEee
Q 048021 18 DTNDPAWFSS---------MTKVLRKIKGAS-YTIDAEEGMAYITGRANPRKLLRKLQS-GKYANLCW 74 (143)
Q Consensus 18 ~m~C~gC~~k---------IkkaL~kI~GVs-V~VDle~~~VtV~G~vdp~~Ll~aI~k-Gk~Ael~~ 74 (143)
...|+.|.+. +.+.+.. .|+. +.|+.+ .+++.+.+.+++ |..-.++.
T Consensus 36 a~~C~~C~~~~~~l~~~~~l~~~~~~-~~~~~v~v~~d---------~~~~~~~~~~~~~~~~~~~~~ 93 (142)
T 3ewl_A 36 DPDCSNCRKFEKLFAEIPAFVEMVEN-GTLRVLAIYPD---------ENREEWATKAVYMPQGWIVGW 93 (142)
T ss_dssp CSSCHHHHHHHHHHHTCHHHHHHHHH-TSEEEEEEECS---------SCHHHHHHHHTTSCTTCEEEE
T ss_pred CCCCccHHHHHHHHHHhHHHHHHhcc-CCeEEEEEEec---------CCHHHHHHHHHHcCCCcceee
Confidence 4589999987 2333322 4553 444433 467888888888 87655544
No 244
>3ktw_A SRP19, signal recognition particle 19 kDa protein; ribonucleoprotein complex, RNA-RNA tertiary interactions, AS loop, 7S RNA; 3.20A {Sulfolobus solfataricus}
Probab=23.99 E-value=1.3e+02 Score=21.41 Aligned_cols=40 Identities=10% Similarity=0.141 Sum_probs=29.1
Q ss_pred HHHHHHHhccCCeeEEEeC---------CCCEEEEEeecCHHHHHHHHhc
Q 048021 26 SSMTKVLRKIKGASYTIDA---------EEGMAYITGRANPRKLLRKLQS 66 (143)
Q Consensus 26 ~kIkkaL~kI~GVsV~VDl---------e~~~VtV~G~vdp~~Ll~aI~k 66 (143)
+.|.+|++++ |..+.++. ..|.|.|.....-..|+++|.+
T Consensus 47 ~EI~~a~~~L-gl~~~vE~~K~yPrdw~~~GRVrV~~~~sK~~Llk~IA~ 95 (109)
T 3ktw_A 47 EELVSTLREL-GLDPIVIENKKYPRDRKINFLIAVKKVKSKNYTLKIIHN 95 (109)
T ss_dssp HHHHHHHHHT-TCCCEEECSCCCSSCTTCCCEEEEECSSSHHHHHHHHHH
T ss_pred HHHHHHHHHc-CCCeEEccCCCCCcccCCCCEEEEecCCCHHHHHHHHHH
Confidence 4678888775 66544443 2499999887788888888876
No 245
>3l4n_A Monothiol glutaredoxin-6; C-terminal domain of GRX6, oxidoreductase; HET: GSH; 1.50A {Saccharomyces cerevisiae}
Probab=23.83 E-value=90 Score=21.78 Aligned_cols=22 Identities=9% Similarity=-0.087 Sum_probs=15.2
Q ss_pred EEEEEeecChhhHHHHHHHHhcc
Q 048021 13 CGLKVDTNDPAWFSSMTKVLRKI 35 (143)
Q Consensus 13 vvlkV~m~C~gC~~kIkkaL~kI 35 (143)
+++=.--.|+-|. ++++.|.+.
T Consensus 16 Vvvysk~~Cp~C~-~ak~lL~~~ 37 (127)
T 3l4n_A 16 IIIFSKSTCSYSK-GMKELLENE 37 (127)
T ss_dssp EEEEECTTCHHHH-HHHHHHHHH
T ss_pred EEEEEcCCCccHH-HHHHHHHHh
Confidence 4444445899998 677888774
No 246
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=23.73 E-value=1.5e+02 Score=26.37 Aligned_cols=59 Identities=20% Similarity=0.258 Sum_probs=42.2
Q ss_pred EEEEEEeecChhhHHHHHHHHhcc----CCeeEEEeCCCCEEEEEe--ecCHHHHHHHHhc--CCce
Q 048021 12 TCGLKVDTNDPAWFSSMTKVLRKI----KGASYTIDAEEGMAYITG--RANPRKLLRKLQS--GKYA 70 (143)
Q Consensus 12 tvvlkV~m~C~gC~~kIkkaL~kI----~GVsV~VDle~~~VtV~G--~vdp~~Ll~aI~k--Gk~A 70 (143)
.+.+.|+-.=..=..++.++|++| +.+.++.+.+.++..|.| ++=-+.+++.|++ |..+
T Consensus 418 vv~vavep~~~~d~~kL~~~L~kL~~eDPsl~v~~~eetge~vi~g~GELHLei~l~rLr~e~gvev 484 (709)
T 4fn5_A 418 VISVAVEPKTKADQEKMGIALGKLAQEDPSFRVKTDEESGQTIISGMGELHLDIIVDRMKREFGVEA 484 (709)
T ss_dssp SEEEEECBSSTTTHHHHHHHHHHHHHHCTTCEEEEETTTTEEEEEESCHHHHHHHHHHHHTTTCCCB
T ss_pred ceEEEEecCCHHHhhhhHHHHHHHHHhCCeEEEEEecCCCcEEEEEECHHHHHHHHHHHHHHhCceE
Confidence 344455544455677888888776 345788899999988885 5678999999998 5443
No 247
>3e3x_A BIPA; MCSG,PSI2, structural genomics, protein struct initiative, midwest center for structural genomics, GTP-BIN nucleotide-binding; HET: MLZ MLY; 1.95A {Vibrio parahaemolyticus}
Probab=23.67 E-value=1.9e+02 Score=24.09 Aligned_cols=49 Identities=10% Similarity=0.095 Sum_probs=38.2
Q ss_pred HHHHHHHHhccC----CeeEEEeCCCCEEEEEe--ecCHHHHHHHHhc-CCceEEe
Q 048021 25 FSSMTKVLRKIK----GASYTIDAEEGMAYITG--RANPRKLLRKLQS-GKYANLC 73 (143)
Q Consensus 25 ~~kIkkaL~kI~----GVsV~VDle~~~VtV~G--~vdp~~Ll~aI~k-Gk~Ael~ 73 (143)
..++..+|.++. -+.|+.|.+.+...|.| .+--+.|+++|++ |..+++-
T Consensus 55 ~~kL~~aL~kl~~eDpsL~v~~~~~t~~~~v~G~GELHLeIl~ErLrrEg~ev~v~ 110 (332)
T 3e3x_A 55 SRNILERLEKELVHNVALRVEQTDDPDKFRVSGRGELHLSILIENMRREGFELAVS 110 (332)
T ss_dssp HHHHHHHHHHHHHHCTTCEEEECSSTTEEEEEESSHHHHHHHHHHHHHHTBCEEEC
T ss_pred HHHHHHHHHHHhccCCEEEEEEcCCCCeEEEEeeCHHHHHHHHHHHHhcCceEEEe
Confidence 568888887762 23588888889999985 5678999999999 9887754
No 248
>2yy3_A Elongation factor 1-beta; structural genomics, NPPSFA, national Pro protein structural and functional analyses; 2.50A {Pyrococcus horikoshii}
Probab=23.34 E-value=1.4e+02 Score=20.36 Aligned_cols=25 Identities=12% Similarity=0.323 Sum_probs=19.2
Q ss_pred ecCh-h-hHHHHHHHHhccCCe-eEEEe
Q 048021 19 TNDP-A-WFSSMTKVLRKIKGA-SYTID 43 (143)
Q Consensus 19 m~C~-g-C~~kIkkaL~kI~GV-sV~VD 43 (143)
+-.+ + -...|+.+|++++|| +|+|.
T Consensus 59 veD~~~~~tD~lee~i~~~e~VqSvdV~ 86 (91)
T 2yy3_A 59 GRDEEGYSFDEVAEKFEEVENVESAEVE 86 (91)
T ss_dssp ECSSTTCCHHHHHHHHHHSTTEEEEEEE
T ss_pred EECCCccccHHHHHHHhcCCCceEEEEE
Confidence 4444 3 489999999999999 77764
No 249
>3oiz_A Antisigma-factor antagonist, STAS; PSI-2, midwest center for structural genomics, protein struc initiative, MCSG, STAS domain; 1.65A {Rhodobacter sphaeroides} PDB: 3lkl_A
Probab=23.20 E-value=59 Score=21.28 Aligned_cols=65 Identities=12% Similarity=-0.005 Sum_probs=40.9
Q ss_pred eEEEEEEee-cChhhHHHHHHHHhccCCe-eEEEeCCCCEEEEE---eecCHHHHHHHHhc-CCceEEeecCC
Q 048021 11 MTCGLKVDT-NDPAWFSSMTKVLRKIKGA-SYTIDAEEGMAYIT---GRANPRKLLRKLQS-GKYANLCWVSA 77 (143)
Q Consensus 11 ~tvvlkV~m-~C~gC~~kIkkaL~kI~GV-sV~VDle~~~VtV~---G~vdp~~Ll~aI~k-Gk~Ael~~~~~ 77 (143)
.+.++++++ =.-+.+..+++.|...++. .|.+|+.. |..- |-.--..+.+.+++ |.++.|+++.+
T Consensus 16 ~~~v~~l~G~L~f~~a~~~~~~l~~~~~~~~vvlDls~--v~~iDssgl~~L~~~~~~~~~~g~~l~l~~~~~ 86 (99)
T 3oiz_A 16 RERIYRVEGQLFYASVEDFMAAFDFREALDRVVIDVSR--AHIWDISSVQALDMAVLKFRREGAEVRIVGMNE 86 (99)
T ss_dssp SEEEEEEEEEECGGGHHHHHHTCCTTSCCSEEEEEEEE--EEECSHHHHHHHHHHHHHHHHTTCEEEEESHHH
T ss_pred CEEEEEEeeEEehhhHHHHHHHHhhcCCCCEEEEECCC--CCccCHHHHHHHHHHHHHHHhCCCEEEEEcCCH
Confidence 367788876 3667888898888755555 46666553 2221 11234455666666 99999888743
No 250
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=23.15 E-value=1.3e+02 Score=19.30 Aligned_cols=62 Identities=11% Similarity=0.199 Sum_probs=38.2
Q ss_pred EEEEE-eecCh-hhHHHHHHHHhccCCe-eEEEeCCCCEEEEEe--ecCHHHHHHHHhc----CCceEEeecC
Q 048021 13 CGLKV-DTNDP-AWFSSMTKVLRKIKGA-SYTIDAEEGMAYITG--RANPRKLLRKLQS----GKYANLCWVS 76 (143)
Q Consensus 13 vvlkV-~m~C~-gC~~kIkkaL~kI~GV-sV~VDle~~~VtV~G--~vdp~~Ll~aI~k----Gk~Ael~~~~ 76 (143)
.+|-| ++.-. --...|++.+.+.-.| +|.+ ..+-..|+= ..++++.++.+.. |+...+-...
T Consensus 28 ~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 98 (110)
T 1wf1_A 28 SRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMAG 98 (110)
T ss_dssp SEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEESC
T ss_pred cEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECC
Confidence 45556 46655 6688999999998777 6777 456666652 2344445544443 5555555543
No 251
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=23.07 E-value=1.5e+02 Score=18.90 Aligned_cols=52 Identities=15% Similarity=0.286 Sum_probs=31.5
Q ss_pred EEEEE-eecChhhHHHHHHHHhccCCe-eEEEeCCCC---EEEEEeecCHHHHHHHHh
Q 048021 13 CGLKV-DTNDPAWFSSMTKVLRKIKGA-SYTIDAEEG---MAYITGRANPRKLLRKLQ 65 (143)
Q Consensus 13 vvlkV-~m~C~gC~~kIkkaL~kI~GV-sV~VDle~~---~VtV~G~vdp~~Ll~aI~ 65 (143)
.+|-| ++.-.--...|++.+.+.-.| ++.|..... -..|+= .+++...+||+
T Consensus 23 ~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~~~g~afV~f-~~~~~A~~A~~ 79 (109)
T 1x4a_A 23 CRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEF-EDPRDAEDAVY 79 (109)
T ss_dssp SEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCSSSSSCCEEEEE-SCHHHHHHHHH
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEE-CCHHHHHHHHH
Confidence 34555 566666788999999998777 677754432 444431 24444444543
No 252
>3gn3_A Putative protein-disulfide isomerase; MCSG, PSI, structural GEN protein structure initiative, midwest center for structural genomics; 2.50A {Pseudomonas syringae PV}
Probab=22.92 E-value=84 Score=22.96 Aligned_cols=27 Identities=7% Similarity=0.103 Sum_probs=18.6
Q ss_pred CceEEEEEEeecChhhHHH---HHHHHhcc
Q 048021 9 AKMTCGLKVDTNDPAWFSS---MTKVLRKI 35 (143)
Q Consensus 9 ~~~tvvlkV~m~C~gC~~k---IkkaL~kI 35 (143)
.+.|++.=.+..|+.|++- +.+.|++.
T Consensus 14 a~vtiv~f~D~~Cp~C~~~~~~~~~~l~~~ 43 (182)
T 3gn3_A 14 GPRLFEVFLEPTCPFSVKAFFKLDDLLAQA 43 (182)
T ss_dssp CSEEEEEEECTTCHHHHHHHTTHHHHHHHH
T ss_pred CCEEEEEEECCCCHhHHHHHHHHHHHHHHh
Confidence 3445666667899999974 66666664
No 253
>2kok_A Arsenate reductase; brucellosis, zoonotic, oxidoreductase, S genomics, seattle structural genomics center for infectious ssgcid; NMR {Brucella abortus}
Probab=22.90 E-value=36 Score=23.34 Aligned_cols=49 Identities=16% Similarity=0.045 Sum_probs=29.2
Q ss_pred eEEEEEEeecChhhHHHHHHHHhccCCee-EEEeCCCCEEEEEeecCHHHHHHHHhc-C
Q 048021 11 MTCGLKVDTNDPAWFSSMTKVLRKIKGAS-YTIDAEEGMAYITGRANPRKLLRKLQS-G 67 (143)
Q Consensus 11 ~tvvlkV~m~C~gC~~kIkkaL~kI~GVs-V~VDle~~~VtV~G~vdp~~Ll~aI~k-G 67 (143)
|.++|=-.-.|..|. ++++.|.. .||. ..+|..+. ..+.+.+.+.+++ |
T Consensus 5 M~i~iY~~~~C~~C~-ka~~~L~~-~gi~y~~~di~~~------~~~~~~l~~~~~~~g 55 (120)
T 2kok_A 5 MSVTIYGIKNCDTMK-KARIWLED-HGIDYTFHDYKKE------GLDAETLDRFLKTVP 55 (120)
T ss_dssp SCEEEEECSSCHHHH-HHHHHHHH-HTCCEEEEEHHHH------CCCHHHHHHHHHHSC
T ss_pred cEEEEEECCCChHHH-HHHHHHHH-cCCcEEEEeeeCC------CCCHHHHHHHHHHcC
Confidence 444444445899997 66777776 5774 33444321 2345677777766 7
No 254
>3ctg_A Glutaredoxin-2; reduced form, electron transport, mitochondrion, redox-activ transit peptide, transport, oxidoreductase; 1.50A {Saccharomyces cerevisiae} PDB: 3ctf_A 3d4m_A 3d5j_A*
Probab=22.65 E-value=1.6e+02 Score=20.11 Aligned_cols=23 Identities=9% Similarity=0.177 Sum_probs=16.8
Q ss_pred EEEEEeecChhhHHHHHHHHhcc
Q 048021 13 CGLKVDTNDPAWFSSMTKVLRKI 35 (143)
Q Consensus 13 vvlkV~m~C~gC~~kIkkaL~kI 35 (143)
+++=..-.|+-|.+.|++.|.++
T Consensus 39 Vvvy~~~~Cp~C~~a~k~~L~~~ 61 (129)
T 3ctg_A 39 VFVAAKTYCPYCKATLSTLFQEL 61 (129)
T ss_dssp EEEEECTTCHHHHHHHHHHHTTS
T ss_pred EEEEECCCCCchHHHHHHHHHhc
Confidence 44434458999997769999875
No 255
>1ilo_A Conserved hypothetical protein MTH895; beta-alpha-beta-alpha-beta-BETA-alpha motif, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus str} SCOP: c.47.1.1
Probab=22.63 E-value=55 Score=19.18 Aligned_cols=41 Identities=5% Similarity=-0.092 Sum_probs=23.9
Q ss_pred cChhhHHH---HHHHHhccC-Cee-EEEeCCCCEEEEEeecCHHHHHHHHhc-CCceEEe
Q 048021 20 NDPAWFSS---MTKVLRKIK-GAS-YTIDAEEGMAYITGRANPRKLLRKLQS-GKYANLC 73 (143)
Q Consensus 20 ~C~gC~~k---IkkaL~kI~-GVs-V~VDle~~~VtV~G~vdp~~Ll~aI~k-Gk~Ael~ 73 (143)
.|+.|..- ++++.++.+ .+. +.|| ...+.++..- |..+.++
T Consensus 10 wC~~C~~~~~~l~~~~~~~~~~~~~~~v~-------------~~~~~~~~~v~~~Pt~~~ 56 (77)
T 1ilo_A 10 GCANCQMLEKNAREAVKELGIDAEFEKIK-------------EMDQILEAGLTALPGLAV 56 (77)
T ss_dssp SSSTTHHHHHHHHHHHHHTTCCEEEEEEC-------------SHHHHHHHTCSSSSCEEE
T ss_pred CChhHHHHHHHHHHHHHHcCCceEEEEec-------------CHHHHHHCCCCcCCEEEE
Confidence 69999753 233333333 232 4444 2456777877 8887776
No 256
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=22.48 E-value=1.1e+02 Score=19.00 Aligned_cols=57 Identities=14% Similarity=0.137 Sum_probs=36.0
Q ss_pred eecChhhHHHHHHHHhccCCe-eEEEeCCCCEEEEEeecCHHHHHHHHhc-------CCceEEeecC
Q 048021 18 DTNDPAWFSSMTKVLRKIKGA-SYTIDAEEGMAYITGRANPRKLLRKLQS-------GKYANLCWVS 76 (143)
Q Consensus 18 ~m~C~gC~~kIkkaL~kI~GV-sV~VDle~~~VtV~G~vdp~~Ll~aI~k-------Gk~Ael~~~~ 76 (143)
++.=.--...|++.+.+. +| ++.++...+-..|+= .+++...+||+. |+...+-..+
T Consensus 12 nLp~~~t~~~l~~~F~~~-~v~~~~i~~~~g~afV~f-~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~ 76 (88)
T 1wg1_A 12 NLPQDSNCQEVHDLLKDY-DLKYCYVDRNKRTAFVTL-LNGEQAQNAIQMFHQYSFRGKDLIVQLQP 76 (88)
T ss_dssp SCCSSCCHHHHHHHTCSS-CCCCEEEEGGGTEEEECC-SCHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred CCCCCCCHHHHHHHHhhC-CeEEEEEeCCCcEEEEEE-CCHHHHHHHHHHhCCCeECCcEEEEEEcC
Confidence 344445578899999999 88 788886666666652 244555555542 5555554443
No 257
>2y9k_A Protein INVG; protein transport, type III secretion system, outer membrane secretin family, C15 fold; 8.30A {Salmonella enterica subsp}
Probab=22.41 E-value=1.2e+02 Score=21.24 Aligned_cols=42 Identities=12% Similarity=0.233 Sum_probs=28.7
Q ss_pred hhHHHHHHHHhccC---Ce-eEEEeCCCCEEEEEeec-CHHHHHHHH
Q 048021 23 AWFSSMTKVLRKIK---GA-SYTIDAEEGMAYITGRA-NPRKLLRKL 64 (143)
Q Consensus 23 gC~~kIkkaL~kI~---GV-sV~VDle~~~VtV~G~v-dp~~Ll~aI 64 (143)
.=++.+.+.|+.+. .- .+.+|..++.+.|+|.. .-+.|.+.|
T Consensus 84 ~~a~~l~~~L~~~~ll~~rg~v~~d~~tn~l~v~g~~~~v~~v~~~i 130 (137)
T 2y9k_A 84 VSLNEFNNFLKRSGLYNKNYPLRGDNRKGTFYVSGPPVYVDMVVNAA 130 (137)
T ss_dssp SCHHHHHHHHCCTTCCCSSSCEEECSSTTEEEEEECHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHcCCCCCCCceEECCCCCEEEEECcHHHHHHHHHHH
Confidence 34677888887653 11 49999999999999974 344444443
No 258
>2g2q_A Glutaredoxin-2; thioredoxin-fold, oxidoreductase, poxvirus; 2.50A {Vaccinia virus}
Probab=22.39 E-value=32 Score=25.20 Aligned_cols=55 Identities=11% Similarity=0.237 Sum_probs=37.0
Q ss_pred cChhhHHHHHHHHhccCCe-e-EEEe-----CCCCEEEEEeecCHHHHHHHHhc--CCceEEeec
Q 048021 20 NDPAWFSSMTKVLRKIKGA-S-YTID-----AEEGMAYITGRANPRKLLRKLQS--GKYANLCWV 75 (143)
Q Consensus 20 ~C~gC~~kIkkaL~kI~GV-s-V~VD-----le~~~VtV~G~vdp~~Ll~aI~k--Gk~Ael~~~ 75 (143)
-|+=|+ .+..+|++|++- + +.|+ .++|.|.+-|..-.-.++..+-+ |..+.++.-
T Consensus 12 ~C~vCe-~~s~~l~~ledeY~ilrVNIlSfFsK~g~v~~lg~~~~y~lInn~~~~l~ne~v~lfK 75 (124)
T 2g2q_A 12 YCSICE-NVSDAVEELKSEYDILHVDILSFFLKDGDSSMLGDVKRGTLIGNFAAHLSNYIVSIFK 75 (124)
T ss_dssp TCHHHH-HHHHHHHTTTTTEEEEEEECCCCCCCTTGGGC-----CCTHHHHHHHHGGGGCEEEEE
T ss_pred ccHHHH-HHHHHHHHhhccccEEEEEeeeeeccCCceeeeeccchhhhHHHHHHhhcccEEEEEE
Confidence 599998 788899999886 4 4554 37889988886666778888877 766554443
No 259
>2asb_A Transcription elongation protein NUSA; protein-RNA complex, transcription/RNA complex; 1.50A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 PDB: 2atw_A
Probab=22.35 E-value=28 Score=28.17 Aligned_cols=46 Identities=20% Similarity=0.174 Sum_probs=26.0
Q ss_pred HHHHHHHHhccCCeeEEE-eCCCCEEEEEeecCHHHHHHHHhc-CCceEE
Q 048021 25 FSSMTKVLRKIKGASYTI-DAEEGMAYITGRANPRKLLRKLQS-GKYANL 72 (143)
Q Consensus 25 ~~kIkkaL~kI~GVsV~V-Dle~~~VtV~G~vdp~~Ll~aI~k-Gk~Ael 72 (143)
+.=|.++|.--+=.+|.+ |.+++.+.|. ++++++-.||-| |..+.|
T Consensus 161 ~~fi~nalsPA~V~~V~i~~~~~~~a~V~--V~~~qlslAIGk~GqNvrL 208 (251)
T 2asb_A 161 ARFVANALSPAKVVSVSVIDQTARAARVV--VPDFQLSLAIGKEGQNARL 208 (251)
T ss_dssp HHHHHHHTTTSCCSEEEEEETTTTEEEEE--ECGGGHHHHHCGGGHHHHH
T ss_pred HHHHHhccCCcceEEEEEEcCCCcEEEEE--EChHHhhhhhcCCcCcHHH
Confidence 344566665432226654 6666666655 667777766666 555443
No 260
>4av2_A PILQ, type IV pilus biogenesis and competence protein P; protein transport, outer membrane protein; 26.00A {Neisseria meningitidis MC58}
Probab=22.29 E-value=1.3e+02 Score=27.28 Aligned_cols=49 Identities=10% Similarity=0.061 Sum_probs=39.6
Q ss_pred hhHHHHHHHHhccCCeeEEEeCC-CCEEEEEe-ecCHHHHHHHHhc--CCceE
Q 048021 23 AWFSSMTKVLRKIKGASYTIDAE-EGMAYITG-RANPRKLLRKLQS--GKYAN 71 (143)
Q Consensus 23 gC~~kIkkaL~kI~GVsV~VDle-~~~VtV~G-~vdp~~Ll~aI~k--Gk~Ae 71 (143)
-=.+.|-++|.+.-|+++.+|.+ +++|++.- .++.+++++.|.+ |+..+
T Consensus 331 ~~vr~VL~~LA~~tg~NiV~~~~V~G~VTL~L~nVp~~qaLd~IL~~~GL~~~ 383 (745)
T 4av2_A 331 VEIRTILQILAKESGMNIVASDSVNGKMTLSLKDVPWDQALDLVMQARNLDMR 383 (745)
T ss_dssp EEHHHHHHHHHHTTSCEEEECSSCCCEEEEECCSEEHHHHHHHHHHHTCCEEE
T ss_pred CCHHHHHHHHHHHhCCeEEECCCCCceEEEEEeCCcHHHHHHHHHHhcCceEE
Confidence 34678888899999998888776 78999874 4788999999988 88765
No 261
>3tsh_A Pollen allergen PHL P 4; flavoprotein, BI-covalent flavinylation, oxidoreductase, Glu dehydrogenase, N-glycosylation, allergy, dehydrogenase; HET: FDA; 1.90A {Phleum pratense} PDB: 3tsj_A*
Probab=22.23 E-value=64 Score=27.39 Aligned_cols=32 Identities=13% Similarity=0.134 Sum_probs=28.2
Q ss_pred EEEeCCCCEEEEEeecCHHHHHHHHhc-CCceE
Q 048021 40 YTIDAEEGMAYITGRANPRKLLRKLQS-GKYAN 71 (143)
Q Consensus 40 V~VDle~~~VtV~G~vdp~~Ll~aI~k-Gk~Ae 71 (143)
|+||.++++|+|.+-+...+|.++|.+ |+...
T Consensus 112 v~~d~~~~~~~v~~G~~~~~~~~~l~~~g~~~~ 144 (500)
T 3tsh_A 112 VWVDGKARTAWVDSGAQLGELYYAIYKASPTLA 144 (500)
T ss_dssp EEEETTTTEEEEETTSBHHHHHHHHHHHCTTEE
T ss_pred EEECCCCCEEEEccCcCHHHHHHHHHHhCCCcc
Confidence 789999999999988899999999999 97644
No 262
>4e1r_A Protein LSR2; anti-parallel beta sheet, dimer, DNA binding protein; 2.04A {Mycobacterium tuberculosis}
Probab=22.22 E-value=28 Score=24.07 Aligned_cols=27 Identities=19% Similarity=0.122 Sum_probs=16.0
Q ss_pred EEEeCCCCEEEEE-eecCHHHHHHHHhc
Q 048021 40 YTIDAEEGMAYIT-GRANPRKLLRKLQS 66 (143)
Q Consensus 40 V~VDle~~~VtV~-G~vdp~~Ll~aI~k 66 (143)
|.+-++...-.|. +..++++|.++|+.
T Consensus 48 V~FsLDGv~YEIDLS~~NA~kLR~aLap 75 (86)
T 4e1r_A 48 VEFGLDGVTYEIDLSTKNATKLRGDLKQ 75 (86)
T ss_dssp EEEEETTEEEEEEECHHHHHHHHHHHHH
T ss_pred EEEEECCEEEEEECCHHHHHHHHHHHHH
Confidence 4444444444444 23568888888876
No 263
>3l78_A Regulatory protein SPX; transcription, transcriptional factor, disulfide bond, redox-active center, transcription regulati; 1.90A {Streptococcus mutans} SCOP: c.47.1.12
Probab=22.18 E-value=1.9e+02 Score=19.63 Aligned_cols=45 Identities=9% Similarity=0.005 Sum_probs=31.0
Q ss_pred eecChhhHHHHHHHHhccCCee-EEEeCCCCEEEEEeecCHHHHHHHHhc-CCce
Q 048021 18 DTNDPAWFSSMTKVLRKIKGAS-YTIDAEEGMAYITGRANPRKLLRKLQS-GKYA 70 (143)
Q Consensus 18 ~m~C~gC~~kIkkaL~kI~GVs-V~VDle~~~VtV~G~vdp~~Ll~aI~k-Gk~A 70 (143)
.-.|..|. ++++.|.. .||. ..+|..+. ..+.++|.+.+.+ |..+
T Consensus 7 ~~~C~~c~-ka~~~L~~-~gi~~~~~di~~~------~~~~~el~~~l~~~~~~~ 53 (120)
T 3l78_A 7 SPSCTSCR-KARAWLNR-HDVVFQEHNIMTS------PLSRDELLKILSYTENGT 53 (120)
T ss_dssp CSSCHHHH-HHHHHHHH-TTCCEEEEETTTS------CCCHHHHHHHHHHCSSTH
T ss_pred CCCCHHHH-HHHHHHHH-cCCCeEEEecccC------CCcHHHHHHHHhhcCCCH
Confidence 34799998 55666766 6885 45666553 3677888888887 6654
No 264
>2lst_A Thioredoxin; structural genomics, NEW YORK structural genomics research consortium, oxidoreductase; NMR {Thermus thermophilus}
Probab=27.68 E-value=19 Score=23.74 Aligned_cols=10 Identities=10% Similarity=-0.120 Sum_probs=6.8
Q ss_pred ecChhhHHHH
Q 048021 19 TNDPAWFSSM 28 (143)
Q Consensus 19 m~C~gC~~kI 28 (143)
-.|+.|.+-.
T Consensus 29 ~wC~~C~~~~ 38 (130)
T 2lst_A 29 EHCPYCQQMN 38 (130)
Confidence 3699997543
No 265
>3d7a_A UPF0201 protein PH1010; DUF54 family, unknown function; 1.90A {Pyrococcus horikoshii}
Probab=22.07 E-value=1.3e+02 Score=21.63 Aligned_cols=55 Identities=9% Similarity=0.172 Sum_probs=31.7
Q ss_pred EEEEEEeecChhhHHHHHHHHhcc-CCeeEEEeCCCCEEEEEeec----CHHHHHHHHhc
Q 048021 12 TCGLKVDTNDPAWFSSMTKVLRKI-KGASYTIDAEEGMAYITGRA----NPRKLLRKLQS 66 (143)
Q Consensus 12 tvvlkV~m~C~gC~~kIkkaL~kI-~GVsV~VDle~~~VtV~G~v----dp~~Ll~aI~k 66 (143)
.+++.+..+---=..||.+||..+ ++..+++..+..-+.+.+.. .-+.|.+.|.+
T Consensus 7 ~I~i~a~v~~TED~eKV~~Al~nifp~~~i~~~~~gh~~il~~~~~~~~~l~~l~~~l~~ 66 (138)
T 3d7a_A 7 EVEVEAYVYPTEDIRKVKKAMLNLIPGLQFEAFDKGEYVILVGRTKDKRALQRLYELFRG 66 (138)
T ss_dssp EEEEEEEECTTBCHHHHHHHHHHHSTTCEEEEEECSSSEEEEEEECCTTTTHHHHHHHHH
T ss_pred EEEEEEEEeCCCCHHHHHHHHHHhCCCCceEEEecccEEEEEEEechHHHHHHHHHHhhh
Confidence 667777776666677999999987 44555443333223334432 33455555544
No 266
>1x60_A Sporulation-specific N-acetylmuramoyl-L-alanine amidase; CWLC, CWLCR, peptidoglycan, cell WALL lytic amidase, tandem repeats, hydrolase; NMR {Bacillus subtilis}
Probab=22.00 E-value=1.2e+02 Score=18.81 Aligned_cols=62 Identities=15% Similarity=0.075 Sum_probs=37.1
Q ss_pred EEEEEEe-ecChhhHHHHHHHHhccCCeeEEEeCCCC--EEEEEee---cCHHHHHHHHhc-CCceEEee
Q 048021 12 TCGLKVD-TNDPAWFSSMTKVLRKIKGASYTIDAEEG--MAYITGR---ANPRKLLRKLQS-GKYANLCW 74 (143)
Q Consensus 12 tvvlkV~-m~C~gC~~kIkkaL~kI~GVsV~VDle~~--~VtV~G~---vdp~~Ll~aI~k-Gk~Ael~~ 74 (143)
...+.|- ..-..=++++.+.|... |..+.|..... +|.|-.- .+.+++++.|++ |+++-|+.
T Consensus 9 ~~~vQvGaf~~~~~A~~~~~~L~~~-g~~~~i~~~~~~yRV~vGpf~~~~~A~~~~~~L~~~g~~~~iv~ 77 (79)
T 1x60_A 9 LYKVQIGAFKVKANADSLASNAEAK-GFDSIVLLKDGLYKVQIGAFSSKDNADTLAARAKNAGFDAIVIL 77 (79)
T ss_dssp EEEEEEEEESCHHHHHHHHHHHHHH-TCCEEEEEETTEEEEEEEEESSHHHHHHHHHHHHHHTSCCEEEE
T ss_pred CEEEEEEEcCCHHHHHHHHHHHHhC-CCCeEEecCCcEEEEEECCcCCHHHHHHHHHHHHHcCCceEEEe
Confidence 3444553 35566777777777765 77433333333 3444322 357788889988 99876653
No 267
>3or5_A Thiol:disulfide interchange protein, thioredoxin protein; PSI-II, structural genomics, protein structure initiative; 1.66A {Chlorobaculum tepidum} SCOP: c.47.1.0
Probab=21.96 E-value=1.8e+02 Score=19.25 Aligned_cols=33 Identities=21% Similarity=0.358 Sum_probs=22.4
Q ss_pred ccCCe-e-EEEeCCCCEEEEE-eecCHHHHHHHHhc
Q 048021 34 KIKGA-S-YTIDAEEGMAYIT-GRANPRKLLRKLQS 66 (143)
Q Consensus 34 kI~GV-s-V~VDle~~~VtV~-G~vdp~~Ll~aI~k 66 (143)
.+.++ . +-||.+...+... |..+++.|.+.|++
T Consensus 113 ~i~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~ 148 (165)
T 3or5_A 113 GITGIPTSFVIDASGNVSGVIVGPRSKADFDRIVKM 148 (165)
T ss_dssp CSCSSSEEEEECTTSBEEEEECSCCCHHHHHHHHHH
T ss_pred CCCCCCeEEEECCCCcEEEEEcCCCCHHHHHHHHHH
Confidence 45666 4 6777655444333 77889999999887
No 268
>1th5_A NIFU1; iron-sulfur cluster binding, structural genomics, program for RICE genome research, unknown function; NMR {Oryza sativa} SCOP: d.52.8.1
Probab=21.90 E-value=35 Score=22.45 Aligned_cols=30 Identities=17% Similarity=0.144 Sum_probs=18.6
Q ss_pred EEEEEEeecChhhH---HHHHHHHh-ccCCe-eEE
Q 048021 12 TCGLKVDTNDPAWF---SSMTKVLR-KIKGA-SYT 41 (143)
Q Consensus 12 tvvlkV~m~C~gC~---~kIkkaL~-kI~GV-sV~ 41 (143)
++.++..+.|.+|. ..|+++|+ ++++| .|.
T Consensus 37 ~V~v~l~GaC~gc~Tlk~gIe~~L~~~vpei~~V~ 71 (74)
T 1th5_A 37 IVKVRLTGPAAVVRTVRIAVSKKLREKIPSIQIVQ 71 (74)
T ss_dssp EEEECCCSSSSSSSSHHHHHHHHHHHHCTTCSEEE
T ss_pred EEEEEEecCCcchHHHHHHHHHHHHHHCCCCcEEE
Confidence 44455556899993 34556665 57777 443
No 269
>2ks0_A Uncharacterized protein; YABP family, structural genomi 2, protein structure initiative, northeast structural genom consortium; NMR {Desulfitobacterium hafniense} PDB: 2kyi_A 3ipf_A
Probab=21.70 E-value=35 Score=22.46 Aligned_cols=15 Identities=20% Similarity=0.375 Sum_probs=6.5
Q ss_pred EEeCCCCEEEEEeec
Q 048021 41 TIDAEEGMAYITGRA 55 (143)
Q Consensus 41 ~VDle~~~VtV~G~v 55 (143)
.+|+++|.|.|+|.+
T Consensus 43 ~L~lE~Gev~IeG~I 57 (71)
T 2ks0_A 43 HLDLKAGQVEVEGLI 57 (71)
T ss_dssp ---CCTTCEEEEEEE
T ss_pred EeecCccEEEEEEEE
Confidence 345555555555543
No 270
>1hqz_1 ABP1P, actin-binding protein; cofilin homology domain, NEW YORK SGX researc for structural genomics, NYSGXRC, structural genomics, PSI; 2.10A {Saccharomyces cerevisiae} SCOP: d.109.1.2
Probab=21.65 E-value=36 Score=23.95 Aligned_cols=40 Identities=20% Similarity=0.352 Sum_probs=25.4
Q ss_pred ecChhhHHHHHH-HHhccCCeeEEEeCCCCEEEEEeecCHHHHHHHHhc
Q 048021 19 TNDPAWFSSMTK-VLRKIKGASYTIDAEEGMAYITGRANPRKLLRKLQS 66 (143)
Q Consensus 19 m~C~gC~~kIkk-aL~kI~GVsV~VDle~~~VtV~G~vdp~~Ll~aI~k 66 (143)
|-+..|...|++ .| .|+.++|...+ ..+++++.|+++|.+
T Consensus 97 mlyas~k~~l~~~~l---~g~~~~i~a~~-----~~el~~e~i~~kl~~ 137 (141)
T 1hqz_1 97 ASFAANFAAVANNLF---KGYHVQVTARD-----EDDLDENELLMKISN 137 (141)
T ss_dssp HHHHHHHHHHHHHTS---CSCSEEEEESS-----GGGGCHHHHHHHHHT
T ss_pred EEEeccHHHHHHHhC---CceEEEEEECC-----hHHCCHHHHHHHHHh
Confidence 456667777775 44 67754332111 136899999999987
No 271
>2hcu_A 3-isopropylmalate dehydratase small subunit; beta barrel, lyase; 2.10A {Streptococcus mutans}
Probab=21.44 E-value=1.7e+02 Score=22.86 Aligned_cols=38 Identities=13% Similarity=-0.018 Sum_probs=22.9
Q ss_pred cCCeeEEEeCCCCEEEEE-e--ecCHHHHHHHH-hcCCceEE
Q 048021 35 IKGASYTIDAEEGMAYIT-G--RANPRKLLRKL-QSGKYANL 72 (143)
Q Consensus 35 I~GVsV~VDle~~~VtV~-G--~vdp~~Ll~aI-~kGk~Ael 72 (143)
-+|..++||+++++|+.. | ..+.+...+.+ ..|.+..-
T Consensus 151 ~~G~~i~VDl~~~~I~~~~g~~~f~i~~~~k~~l~~GlD~i~ 192 (213)
T 2hcu_A 151 KPTDEVTVNLFEQKIYSPVGDFSFDIDGEWKHKLLNGLDDIG 192 (213)
T ss_dssp CTTCEEEEETTTTEEEETTEEEECCCCHHHHHHHHTTCC---
T ss_pred CCCCEEEEECCCCEEEECCceEEEeCCHHHHHHHHcCCChHH
Confidence 467789999999999862 2 23333344444 44877653
No 272
>3qfa_C Thioredoxin; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_C*
Probab=21.36 E-value=1.7e+02 Score=18.74 Aligned_cols=52 Identities=6% Similarity=-0.026 Sum_probs=29.1
Q ss_pred EEEEEe-ecChhhHHH---HHHHHhccCCee-EEEeCCCCEEEEEeecCHHHHHHHHhc-CCceEEee
Q 048021 13 CGLKVD-TNDPAWFSS---MTKVLRKIKGAS-YTIDAEEGMAYITGRANPRKLLRKLQS-GKYANLCW 74 (143)
Q Consensus 13 vvlkV~-m~C~gC~~k---IkkaL~kI~GVs-V~VDle~~~VtV~G~vdp~~Ll~aI~k-Gk~Ael~~ 74 (143)
+++..- -.|+.|.+- +.+..++.++|. +.||.++. ..|.++..- |.++.++.
T Consensus 34 vlv~F~a~wC~~C~~~~p~l~~l~~~~~~v~~~~vd~d~~----------~~l~~~~~v~~~Pt~~~~ 91 (116)
T 3qfa_C 34 VVVDFSATWCGPSKMIKPFFHSLSEKYSNVIFLEVDVDDC----------QDVASECEVKSMPTFQFF 91 (116)
T ss_dssp EEEEEECTTCHHHHHHHHHHHHHHTTCTTSEEEEEETTTT----------HHHHHHTTCCSSSEEEEE
T ss_pred EEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCC----------HHHHHHcCCccccEEEEE
Confidence 344443 479999853 333334456663 66766543 345555554 77765554
No 273
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=21.36 E-value=1.6e+02 Score=18.46 Aligned_cols=53 Identities=8% Similarity=0.047 Sum_probs=34.9
Q ss_pred EEEEE-eecChhhHHHHHHHHhccCCe-eEEEeCCCCEEEEEeecCHHHHHHHHhc
Q 048021 13 CGLKV-DTNDPAWFSSMTKVLRKIKGA-SYTIDAEEGMAYITGRANPRKLLRKLQS 66 (143)
Q Consensus 13 vvlkV-~m~C~gC~~kIkkaL~kI~GV-sV~VDle~~~VtV~G~vdp~~Ll~aI~k 66 (143)
.+|-| ++.-.--...|++.+.+.-.| ++.+-...+-..|+= .+.+...++|+.
T Consensus 28 ~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~g~afV~f-~~~~~A~~Ai~~ 82 (101)
T 2la4_A 28 TTAYIGNIPHFATEADLIPLFQNFGFILDFKHYPEKGCCFIKY-DTHEQAAVCIVA 82 (101)
T ss_dssp CEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEETTTTEEEEEC-SSHHHHHHHHHH
T ss_pred CEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEecCCCEEEEEE-CCHHHHHHHHHH
Confidence 34445 465566778899999888667 788877777777763 244445555544
No 274
>2yan_A Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {Homo sapiens}
Probab=21.33 E-value=85 Score=20.31 Aligned_cols=26 Identities=19% Similarity=0.125 Sum_probs=17.9
Q ss_pred ecChhhHHHHHHHHhccCCee-EEEeCCC
Q 048021 19 TNDPAWFSSMTKVLRKIKGAS-YTIDAEE 46 (143)
Q Consensus 19 m~C~gC~~kIkkaL~kI~GVs-V~VDle~ 46 (143)
-.|+-|. ++++.|.++ ||. ..+|+++
T Consensus 30 ~~C~~C~-~~~~~L~~~-~i~~~~vdi~~ 56 (105)
T 2yan_A 30 AKCGFSK-QILEILNST-GVEYETFDILE 56 (105)
T ss_dssp BCTTHHH-HHHHHHHHH-TCCCEEEEGGG
T ss_pred CCCccHH-HHHHHHHHC-CCCeEEEECCC
Confidence 5799997 678888775 563 4555543
No 275
>2zzt_A Putative uncharacterized protein; cation diffusion facilitator (CDF), transporter, zinc, membrane protein, cytosolic domain; 2.84A {Thermotoga maritima}
Probab=21.25 E-value=1.5e+02 Score=19.78 Aligned_cols=28 Identities=14% Similarity=0.260 Sum_probs=17.7
Q ss_pred HHHHHHHHhccCCe-e---EEEeCCCCEEEEE
Q 048021 25 FSSMTKVLRKIKGA-S---YTIDAEEGMAYIT 52 (143)
Q Consensus 25 ~~kIkkaL~kI~GV-s---V~VDle~~~VtV~ 52 (143)
.++|+++|.+++|| + +.+-.....+.|+
T Consensus 12 ~~~I~~~l~~~~gV~~vh~lr~r~~G~~~~v~ 43 (107)
T 2zzt_A 12 YDDIFAVLERFPNVHNPHRVRIRRVGTKYFIE 43 (107)
T ss_dssp HHHHHHHHTTCSSCEEEEEEEEECSCC-CEEE
T ss_pred HHHHHHHHHcCCCccccEEEEEEEECCcEEEE
Confidence 47899999999998 4 4443333444443
No 276
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=21.17 E-value=2.9e+02 Score=23.82 Aligned_cols=62 Identities=15% Similarity=0.034 Sum_probs=46.1
Q ss_pred EEEEeecChhhHHHHHHHHhcc--CCe-eEEEeCCCCEEEEEe--ecCHHHHHHHHhc--CCceEEeec
Q 048021 14 GLKVDTNDPAWFSSMTKVLRKI--KGA-SYTIDAEEGMAYITG--RANPRKLLRKLQS--GKYANLCWV 75 (143)
Q Consensus 14 vlkV~m~C~gC~~kIkkaL~kI--~GV-sV~VDle~~~VtV~G--~vdp~~Ll~aI~k--Gk~Ael~~~ 75 (143)
...|...-.+=.+++.++|.+| ++. .+..|.+.+...|.| .+--+.++++|++ |-.+++-.+
T Consensus 397 ~~~i~~~~~~d~~kl~~aL~~L~~ED~~~~~~~~~~~~~il~~~G~lhlev~~~rL~~ey~v~v~~~~~ 465 (528)
T 3tr5_A 397 FRLVRLKDPLKQKALLKGLTQLSEEGATQLFRPLDSNELILGAVGLLQFDVVAYRLENEYNVKCVYESV 465 (528)
T ss_dssp EEEEEESCGGGHHHHHHHHHHHHHTTSCEEEEETTCCCEEEEESSTHHHHHHHHHHHHHHCCCEEEECC
T ss_pred EEEEEECChhHHHHHHHHHHHHHhcCCeEEEEcCCCCCEEEEEEcHHHHHHHHHHHHHHhCcEEEEecC
Confidence 3445556667788999999987 455 577888888888885 5667889999987 777765433
No 277
>3hz7_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.00A {Desulfitobacterium hafniense}
Probab=21.02 E-value=61 Score=21.43 Aligned_cols=47 Identities=13% Similarity=0.104 Sum_probs=33.4
Q ss_pred ecChhhHHHHHHHHhcc--CCeeEEEeCCCCEEEEEe--ecCHHHHHHHHhc-CCceEEee
Q 048021 19 TNDPAWFSSMTKVLRKI--KGASYTIDAEEGMAYITG--RANPRKLLRKLQS-GKYANLCW 74 (143)
Q Consensus 19 m~C~gC~~kIkkaL~kI--~GVsV~VDle~~~VtV~G--~vdp~~Ll~aI~k-Gk~Ael~~ 74 (143)
+.|+.=.-+++++|+++ +|- .+.|.. ......|.+.+++ |+.+....
T Consensus 9 l~CP~Pvl~~kkal~~l~~~G~---------~L~V~~dd~~a~~dI~~~~~~~G~~v~~~~ 60 (87)
T 3hz7_A 9 QVCPIPVIRAKKALAELGEAGG---------VVTVLVDNDISRQNLQKMAEGMGYQSEYLE 60 (87)
T ss_dssp CCTTHHHHHHHHHHHTTGGGCC---------EEEEEESSHHHHHHHHHHHHHHTCEEEEEE
T ss_pred CCCCHHHHHHHHHHHhccCCCC---------EEEEEECCccHHHHHHHHHHHCCCEEEEEE
Confidence 47999999999999998 453 333332 2345678888888 99886544
No 278
>2k1h_A Uncharacterized protein Ser13; structural genomics, unknown function, PSI-2, protein struct initiative; NMR {Staphylococcus epidermidis}
Probab=20.99 E-value=98 Score=21.18 Aligned_cols=38 Identities=24% Similarity=0.238 Sum_probs=27.7
Q ss_pred HHHHHHhccCCe-eEEEeCCCCEEEEE--eecCHHHHHHHHhc
Q 048021 27 SMTKVLRKIKGA-SYTIDAEEGMAYIT--GRANPRKLLRKLQS 66 (143)
Q Consensus 27 kIkkaL~kI~GV-sV~VDle~~~VtV~--G~vdp~~Ll~aI~k 66 (143)
-+-++|-+|+|| +|-+. .+-|+|+ ..+|.+.|+..|..
T Consensus 40 PLA~~LF~i~gVk~Vf~g--~dFITVtK~~~~dW~~ikp~I~~ 80 (94)
T 2k1h_A 40 EFINRLFEIEGVKSIFYV--LDFISIDKEDNANWNELLPQIEN 80 (94)
T ss_dssp HHHHHHHTSTTEEEEEEE--TTEEEEEECTTCCHHHHHHHHHH
T ss_pred HHHHHhhCCCCeeEEEEe--CCEEEEecCCCCCHHHHHHHHHH
Confidence 456667799999 67776 5577776 45788888877754
No 279
>3k8g_A 30KLP; outmer membrane protein, membrane protei; 1.95A {Treponema pallidum} PDB: 3k8h_A 3k8i_A 3k8j_A
Probab=20.97 E-value=1.1e+02 Score=24.95 Aligned_cols=53 Identities=13% Similarity=0.179 Sum_probs=38.2
Q ss_pred EEEEEEeecChhhHHHHHHHHhccCCeeEEEeCCCCEEEEE-eecCHHHHHHHHhc
Q 048021 12 TCGLKVDTNDPAWFSSMTKVLRKIKGASYTIDAEEGMAYIT-GRANPRKLLRKLQS 66 (143)
Q Consensus 12 tvvlkV~m~C~gC~~kIkkaL~kI~GVsV~VDle~~~VtV~-G~vdp~~Ll~aI~k 66 (143)
.+.|.++..-..-+-.|+-.|.+. ..-+|.++.++++|+ |++..++|++.|+.
T Consensus 201 ~yslSie~~n~rsa~~ir~Ll~r~--l~~~i~~~g~~~~iE~~~i~~~~l~~li~~ 254 (262)
T 3k8g_A 201 LYTLSLQLGNAKINFPIQFLISRV--LNAHIHVEGDRLIIEDGTISAERLASVISS 254 (262)
T ss_dssp EEEEEEECTTCCCCHHHHHHHHHH--HTCEEEEETTEEEEEEEEEEHHHHHHHHHT
T ss_pred EEEEEEEeccchHHHHHHHHHHHH--hcceEeeecceEEEecCCcCHHHHHHHHHH
Confidence 456666665555566666666552 033777789999998 78999999999986
No 280
>3ezj_A General secretion pathway protein GSPD; general secretory pathway, secretin, single chain antibody, transport, immune system, complex; 2.80A {Escherichia coli}
Probab=20.88 E-value=2.8e+02 Score=20.98 Aligned_cols=69 Identities=9% Similarity=0.123 Sum_probs=44.9
Q ss_pred ceEEEEEEe-ecChhhHHHHHHHHhccCCeeEEEeCCCCEEEEEeec----CHHHHHHHHhc--CCceEEeecCCC
Q 048021 10 KMTCGLKVD-TNDPAWFSSMTKVLRKIKGASYTIDAEEGMAYITGRA----NPRKLLRKLQS--GKYANLCWVSAG 78 (143)
Q Consensus 10 ~~tvvlkV~-m~C~gC~~kIkkaL~kI~GVsV~VDle~~~VtV~G~v----dp~~Ll~aI~k--Gk~Ael~~~~~~ 78 (143)
..+-+|.++ ..-..=++.++..+..-.+..|.+|...+.+.|+|.. ...++++.|.. +..++++.+...
T Consensus 107 ~~t~vi~L~~~~a~~l~~~L~~l~~~~~~g~v~~d~~~N~Liv~g~~~~i~~i~~li~~lD~~~~~~~~v~~L~~a 182 (241)
T 3ezj_A 107 MVTKVVPVRNVSVRELAPILRQMIDSAGSGNVVNYDPSNVIMLTGRASVVERLTEVIQRVDHAGNRTEEVIPLDNA 182 (241)
T ss_dssp EEEEEEECCSSCGGGTHHHHHHHHHHHCSSCEEEEETTTEEEEEEEHHHHHHHHHHHHHHHHHTTCEEEEEECSSS
T ss_pred eEEEEEEecccCHHHHHHHHHHHhCcCCcceEEEcCCccEEEEECCHHHHHHHHHHHHHhCcCCCCceEEEEEecC
Confidence 344556664 4666666667766654322378899999999999974 24555556655 556777777654
No 281
>4e1p_A Protein LSR2; anti-parallel beta sheet, dimer, DNA binding protein; 1.73A {Mycobacterium tuberculosis}
Probab=20.75 E-value=31 Score=22.20 Aligned_cols=12 Identities=33% Similarity=0.382 Sum_probs=8.8
Q ss_pred cCHHHHHHHHhc
Q 048021 55 ANPRKLLRKLQS 66 (143)
Q Consensus 55 vdp~~Ll~aI~k 66 (143)
.++++|.++|+.
T Consensus 39 ~nA~~lr~~L~~ 50 (61)
T 4e1p_A 39 KNATKLRGDLKQ 50 (61)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 467788887765
No 282
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=20.68 E-value=1.9e+02 Score=18.94 Aligned_cols=68 Identities=12% Similarity=0.096 Sum_probs=42.1
Q ss_pred CCceEEEEEE-eecChhhHHHHHHHHhccCCe-eEEEeCCCCEEEEEe--ecCHHHHHHHHhc----CCceEEeec
Q 048021 8 SAKMTCGLKV-DTNDPAWFSSMTKVLRKIKGA-SYTIDAEEGMAYITG--RANPRKLLRKLQS----GKYANLCWV 75 (143)
Q Consensus 8 s~~~tvvlkV-~m~C~gC~~kIkkaL~kI~GV-sV~VDle~~~VtV~G--~vdp~~Ll~aI~k----Gk~Ael~~~ 75 (143)
......+|-| ++..+--...|++.+.+.-.| +|.+....+...|+= ..++++.++.|.. |+...+-+.
T Consensus 6 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 81 (111)
T 1whx_A 6 SGRSKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPEGGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWA 81 (111)
T ss_dssp TSEEEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCSSSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCCCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 3334566667 577676788899999988767 677766666666652 2234444444432 556555444
No 283
>3ne5_A Cation efflux system protein CUSA; transmembrane helix, metal transport; 2.90A {Escherichia coli} PDB: 3k07_A 3k0i_A 3kso_A 3kss_A 3t53_A 3t51_A 3t56_A 4dop_A 4dnt_A
Probab=20.68 E-value=1.2e+02 Score=28.18 Aligned_cols=50 Identities=22% Similarity=0.230 Sum_probs=37.1
Q ss_pred hhhHHHHHHHHhccCCe-eEEEeCCCCEEEEEeec----------CHHHHHHHHhc---CCceE
Q 048021 22 PAWFSSMTKVLRKIKGA-SYTIDAEEGMAYITGRA----------NPRKLLRKLQS---GKYAN 71 (143)
Q Consensus 22 ~gC~~kIkkaL~kI~GV-sV~VDle~~~VtV~G~v----------dp~~Ll~aI~k---Gk~Ae 71 (143)
..=++++++.|++++|+ +|..+...+.-.+.-.+ +++.|.++|+. |..+.
T Consensus 701 ~~~a~~l~~~l~~~~gv~~v~~~~~~~~~~l~i~id~~~a~~~Gls~~~v~~~l~~~~~g~~~~ 764 (1054)
T 3ne5_A 701 DAMAEQIEEVARTVPGVASALAERLEGGRYINVEINREKAARYGMTVADVQLFVTSAVGGAMVG 764 (1054)
T ss_dssp HHHHHHHHHHHHHSTTCSEEEECCSSCEEEEEEEECHHHHHTTTCCHHHHHHHHHTTTSCCEEE
T ss_pred HHHHHHHHHHHhcCCCceEeeccccCCCeeEEEEECHHHHHHcCCCHHHHHHHHHHHhCCceee
Confidence 44567889999999999 79988877766665444 46678888887 65554
No 284
>2bvf_A 6-hydroxy-D-nicotine oxidase; autoflavinylation, enantiomeric substrates, flavoenzymes, NI degradation; HET: FAD; 1.92A {Arthrobacter nicotinovorans} PDB: 2bvg_A* 2bvh_A*
Probab=20.60 E-value=81 Score=26.44 Aligned_cols=30 Identities=23% Similarity=0.260 Sum_probs=26.4
Q ss_pred EEEeCCCCEEEEEeecCHHHHHHHHhc-CCc
Q 048021 40 YTIDAEEGMAYITGRANPRKLLRKLQS-GKY 69 (143)
Q Consensus 40 V~VDle~~~VtV~G~vdp~~Ll~aI~k-Gk~ 69 (143)
|++|.++++|+|.+-+.-.+|.+++.+ |..
T Consensus 94 i~~d~~~~~v~v~aG~~~~~l~~~l~~~Gl~ 124 (459)
T 2bvf_A 94 IHIDTAGSRARIGGGVISGDLVKEAAKFGLA 124 (459)
T ss_dssp EEEETTTTEEEEETTCBHHHHHHHHHTTTEE
T ss_pred EEECCCCCEEEECCCCCHHHHHHHHHHcCCE
Confidence 578888899999988899999999999 964
No 285
>1uta_A FTSN, MSGA, cell division protein FTSN; bacterial cell division protein, RNP domain, transmembrane, inner membrane, repeat; NMR {Escherichia coli} SCOP: d.58.52.1
Probab=20.56 E-value=1.1e+02 Score=19.29 Aligned_cols=55 Identities=16% Similarity=0.247 Sum_probs=33.1
Q ss_pred cChhhHHHHHHHHhccCCeeEEEeCCCCEEEEE-e----ecCHHHHHHHHhc-CCceEEeec
Q 048021 20 NDPAWFSSMTKVLRKIKGASYTIDAEEGMAYIT-G----RANPRKLLRKLQS-GKYANLCWV 75 (143)
Q Consensus 20 ~C~gC~~kIkkaL~kI~GVsV~VDle~~~VtV~-G----~vdp~~Ll~aI~k-Gk~Ael~~~ 75 (143)
.-..=++++...|.. .|+...|....+.-.|. | ..+.+++++.|++ |++.-++..
T Consensus 18 ~~~~~A~~l~~~L~~-~G~~a~i~~~~~~yRV~vGpf~s~~~A~~~~~~L~~~g~~~~iv~~ 78 (81)
T 1uta_A 18 RGAEQAETVRAQLAF-EGFDSKITTNNGWNRVVIGPVKGKENADSTLNRLKMAGHTNCIRLA 78 (81)
T ss_dssp SCHHHHHHHHHHHHH-HTCCEEEEECSSSEEEEESSCBTTTHHHHHHHHHHHHCCSCCBCCC
T ss_pred CCHHHHHHHHHHHHh-CCCCeEEEeCCcEEEEEECCcCCHHHHHHHHHHHHHcCCCcEEEeC
Confidence 345556777777766 47743333333333333 3 2467888999998 988765543
No 286
>3qfm_A SAPH, putative uncharacterized protein; sandwich fold, asymmetric AP4A hydrolase, phosphodiesterase, binding, Mn2+ binding, hydrolase; 1.90A {Streptococcus pneumoniae} PDB: 3qfn_A 3qfo_A*
Probab=20.53 E-value=61 Score=25.13 Aligned_cols=55 Identities=15% Similarity=0.166 Sum_probs=30.8
Q ss_pred CCCCCceEEEEEEeecChhhHHHHHHHHhccCCeeEEEeCCCCEEEEEeec-----CHHHHHHHHhc-C
Q 048021 5 SSSSAKMTCGLKVDTNDPAWFSSMTKVLRKIKGASYTIDAEEGMAYITGRA-----NPRKLLRKLQS-G 67 (143)
Q Consensus 5 s~~s~~~tvvlkV~m~C~gC~~kIkkaL~kI~GVsV~VDle~~~VtV~G~v-----dp~~Ll~aI~k-G 67 (143)
++++...++.+-=++| ||...++++|+.++.. ....|.+.|.+ ++.++++.|++ +
T Consensus 6 ~~~~~~~~i~~iSDiH--g~~~~l~~vl~~~~~~------~~D~ii~~GDlv~~g~~~~~~~~~l~~~~ 66 (270)
T 3qfm_A 6 HHHMDMTKIALLSDIH--GNTTALEAVLADARQL------GVDEYWLLGDILMPGTGRRRILDLLDQLP 66 (270)
T ss_dssp -----CEEEEEECCCT--TCHHHHHHHHHHHHHT------TCCEEEECSCCSSSSSCSHHHHHHHHTSC
T ss_pred cccccccEEEEEecCC--CCHHHHHHHHHHHHhc------CCCEEEEcCCCCCCCCCHHHHHHHHHccC
Confidence 3444444444433677 6778888888776411 22455555642 46788888888 6
No 287
>1rw1_A Conserved hypothetical protein YFFB; thioredoxin fold, structure 2 function project, S2F, structu genomics, unknown function; HET: MSE IPA; 1.02A {Pseudomonas aeruginosa} SCOP: c.47.1.12
Probab=20.49 E-value=1e+02 Score=20.74 Aligned_cols=42 Identities=12% Similarity=-0.057 Sum_probs=24.6
Q ss_pred eecChhhHHHHHHHHhccCCee-EEEeCCCCEEEEEeecCHHHHHHHHhc-C
Q 048021 18 DTNDPAWFSSMTKVLRKIKGAS-YTIDAEEGMAYITGRANPRKLLRKLQS-G 67 (143)
Q Consensus 18 ~m~C~gC~~kIkkaL~kI~GVs-V~VDle~~~VtV~G~vdp~~Ll~aI~k-G 67 (143)
.-.|..|. ++++.|.+ .||. ..+|..+. ..+.+.|.+.+++ |
T Consensus 7 ~~~C~~C~-kak~~L~~-~gi~~~~~di~~~------~~~~~~l~~~~~~~g 50 (114)
T 1rw1_A 7 IKACDTMK-KARTWLDE-HKVAYDFHDYKAV------GIDREHLRRWCAEHG 50 (114)
T ss_dssp CSSCHHHH-HHHHHHHH-TTCCEEEEEHHHH------CCCHHHHHHHHHHHC
T ss_pred CCCChHHH-HHHHHHHH-CCCceEEEeecCC------CCCHHHHHHHHHhCC
Confidence 34899997 56777776 6784 34444321 1344555555555 5
No 288
>3zyw_A Glutaredoxin-3; metal binding protein; 1.84A {Homo sapiens}
Probab=20.43 E-value=97 Score=20.78 Aligned_cols=25 Identities=16% Similarity=0.059 Sum_probs=17.2
Q ss_pred ecChhhHHHHHHHHhccCCee-EEEeCC
Q 048021 19 TNDPAWFSSMTKVLRKIKGAS-YTIDAE 45 (143)
Q Consensus 19 m~C~gC~~kIkkaL~kI~GVs-V~VDle 45 (143)
-.|+-|. ++++.|.. .||. ..+|+.
T Consensus 29 ~~Cp~C~-~ak~~L~~-~gi~y~~~di~ 54 (111)
T 3zyw_A 29 PRCGFSK-QMVEILHK-HNIQFSSFDIF 54 (111)
T ss_dssp BSSHHHH-HHHHHHHH-TTCCCEEEEGG
T ss_pred CcchhHH-HHHHHHHH-cCCCeEEEECc
Confidence 4799998 56777877 4774 445554
No 289
>2o5a_A BH1328 protein; BHR21, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.70A {Bacillus halodurans} SCOP: d.218.1.12
Probab=20.37 E-value=2.3e+02 Score=20.14 Aligned_cols=48 Identities=10% Similarity=0.085 Sum_probs=31.8
Q ss_pred hhhHHHHHHHHhccCCee-EEEeCCCCE------EEEEeec------CHHHHHHHHhc-CCc
Q 048021 22 PAWFSSMTKVLRKIKGAS-YTIDAEEGM------AYITGRA------NPRKLLRKLQS-GKY 69 (143)
Q Consensus 22 ~gC~~kIkkaL~kI~GVs-V~VDle~~~------VtV~G~v------dp~~Ll~aI~k-Gk~ 69 (143)
..-.+.|-++|...+|.+ +.+|+.+.. |..+|.- =.+.|.+++++ |..
T Consensus 4 ~~l~~~i~~al~dkKa~DI~vlDv~~~s~~~DyfVIatg~S~rqv~Aiad~v~~~lk~~g~~ 65 (125)
T 2o5a_A 4 QELLQLAVNAVDDKKAEQVVALNMKGISLIADFFLICHGNSEKQVQAIAHELKKVAQEQGIE 65 (125)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEECBTTBC--CEEEEEEESSHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHcCCCCeEEEEcCCCCcccCEEEEEEcCCHHHHHHHHHHHHHHHHHcCCc
Confidence 345677888898888886 777887533 4555642 25666777766 654
No 290
>1gme_A Heat shock protein 16.9B; small heat shock protein, chaperone, alpha-crystallin; 2.70A {Triticum aestivum} SCOP: b.15.1.1 PDB: 2h50_A 2h53_A 2byu_A
Probab=20.31 E-value=64 Score=23.20 Aligned_cols=23 Identities=9% Similarity=0.385 Sum_probs=17.5
Q ss_pred hccCCe---eEEEeC-CCCEEEEEeec
Q 048021 33 RKIKGA---SYTIDA-EEGMAYITGRA 55 (143)
Q Consensus 33 ~kI~GV---sV~VDl-e~~~VtV~G~v 55 (143)
..|+|+ +|+|.+ +++.++|+|+.
T Consensus 59 ~dlPGv~kedI~V~v~~~~~L~I~g~~ 85 (151)
T 1gme_A 59 ADLPGVKKEEVKVEVEDGNVLVVSGER 85 (151)
T ss_dssp EECTTCCGGGEEEEEETTTEEEEEECC
T ss_pred EECCCCChHHEEEEEecCCEEEEEEEE
Confidence 356888 288888 57899999964
No 291
>3v2d_I 50S ribosomal protein L9; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2j03_I 2jl6_I 2jl8_I 2v47_I 2v49_I 2wdi_I 2wdj_I 2wdl_I 2wdn_I 2wh2_I 2x9s_I 2x9u_I 2xg0_I 2xg2_I 3hux_I 3huz_I 3i8f_K 3i8i_K 3i9c_K 3i9e_K ...
Probab=20.27 E-value=50 Score=24.35 Aligned_cols=46 Identities=15% Similarity=0.237 Sum_probs=31.3
Q ss_pred HHHhccCCeeEEEeCCCCEEEEEeecCHHHHHHHHhc--CCceEEeec
Q 048021 30 KVLRKIKGASYTIDAEEGMAYITGRANPRKLLRKLQS--GKYANLCWV 75 (143)
Q Consensus 30 kaL~kI~GVsV~VDle~~~VtV~G~vdp~~Ll~aI~k--Gk~Ael~~~ 75 (143)
+.-.+|+|+.++|..+.+.=.+-|.+.+..|.++|.+ |..+.-..+
T Consensus 67 ~~~~~L~~~~v~i~~kag~~kLfGSVt~~dIa~al~~~~g~~idk~~I 114 (148)
T 3v2d_I 67 RLKEILENLTLTIPVRAGETKIYGSVTAKDIAEALSRQHGVTIDPKRL 114 (148)
T ss_dssp HHHHHSSSCCEEEECCBSSSSBSSCBCHHHHHHHHTTTTCCCCCTTSS
T ss_pred HHHHHHcCCEEEEEEEcCCCccccccCHHHHHHHHHHhcCCCcchheE
Confidence 3344567766666665432166799999999999987 887664444
No 292
>1psq_A Probable thiol peroxidase; structural genomics, NYSGXRC, PSI, structure initiative, NEW YORK SGX research center for STRU genomics; 2.30A {Streptococcus pneumoniae} SCOP: c.47.1.10
Probab=20.19 E-value=2.1e+02 Score=19.42 Aligned_cols=53 Identities=15% Similarity=0.043 Sum_probs=29.2
Q ss_pred EEEEEE-e-ecChhhHHHHHH---HHhccCCee-EEEeCCCCEEEEEeecCHHHHHHHHhc-CC-ceEEee
Q 048021 12 TCGLKV-D-TNDPAWFSSMTK---VLRKIKGAS-YTIDAEEGMAYITGRANPRKLLRKLQS-GK-YANLCW 74 (143)
Q Consensus 12 tvvlkV-~-m~C~gC~~kIkk---aL~kI~GVs-V~VDle~~~VtV~G~vdp~~Ll~aI~k-Gk-~Ael~~ 74 (143)
.++|.. . ..|..|...+.. ..++++|+. +.|.. -+++.+.+.+++ |. .-.++.
T Consensus 44 ~vvl~F~~~~~c~~C~~~~~~l~~~~~~~~~v~vv~is~----------d~~~~~~~~~~~~~~~~~~~l~ 104 (163)
T 1psq_A 44 KKVLSVVPSIDTGICSTQTRRFNEELAGLDNTVVLTVSM----------DLPFAQKRWCGAEGLDNAIMLS 104 (163)
T ss_dssp EEEEEECSCTTSHHHHHHHHHHHHHTTTCTTEEEEEEES----------SCHHHHHHHHHHHTCTTSEEEE
T ss_pred EEEEEEECCCCCCccHHHHHHHHHHHHHcCCcEEEEEEC----------CCHHHHHHHHHhcCCCCcEEec
Confidence 344444 3 469999876544 222334442 33332 146777777777 87 655544
No 293
>2nwu_A UPF0201 protein SSO1042; conserved hypothetical protein, sulfolobus solfataricus P2, structural genomics, PSI-2; 2.40A {Sulfolobus solfataricus} SCOP: d.77.1.2
Probab=20.04 E-value=1.7e+02 Score=21.70 Aligned_cols=56 Identities=9% Similarity=0.013 Sum_probs=29.9
Q ss_pred eEEEEEEeecChhhHHHHHHHHhcc-CCeeEEEeCCCCEEEEEeec----CHHHHHHHHhc
Q 048021 11 MTCGLKVDTNDPAWFSSMTKVLRKI-KGASYTIDAEEGMAYITGRA----NPRKLLRKLQS 66 (143)
Q Consensus 11 ~tvvlkV~m~C~gC~~kIkkaL~kI-~GVsV~VDle~~~VtV~G~v----dp~~Ll~aI~k 66 (143)
+.+++++..+=--=..||.+||..| ++..+++.....-+++.|.. .-+.|.+.|++
T Consensus 4 ~~I~v~a~V~~TED~eKV~~Ai~Nifp~~~ie~~~~g~~~il~~~~~~~~~l~~l~~lL~~ 64 (155)
T 2nwu_A 4 DKVMVVAEVRPSEDVNKVLSAISNFFDFEKMNTRKEGIIDILVLEARTLKSLLKFHRVLRN 64 (155)
T ss_dssp CEEEEEEEECTTBCHHHHHHHHHTTCCCSEEEC---CCCEEEEEEESSGGGGHHHHHHHHH
T ss_pred EEEEEEEEEeCCCCHHHHHHHHHHhCCCCceEEEeccceEEEEEEeccHHHHHHHHHHhhh
Confidence 3566666665555667999999997 55544432233223445543 23444444443
Done!