BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048024
(344 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2BRT|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Naringenin
Length = 355
Score = 119 bits (298), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 81/314 (25%), Positives = 138/314 (43%), Gaps = 19/314 (6%)
Query: 1 IIIEIMEKLVSSWFNVRPLPEAYVFPPEQRP--GKLFFPQ----GKSIPVLDLGGQD--- 51
+ +E +E L S + +P+ Y+ P E+ +F + G +P +DL +
Sbjct: 1 VAVERVESLAKS--GIISIPKEYIRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDD 58
Query: 52 ---RKETIQLIMKASKEFGFFQVTNHGVSKDLIADTLALAKEFHAMPAEDKICECSKDPD 108
R+ I+ + KAS ++G + NHG+ DL+ +EF ++ E+K +
Sbjct: 59 EKIRENCIEELKKASLDWGVMHLINHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQAT 118
Query: 109 RSCKLYTSSGKYATEEKHYWRDCLIHPSHSFEKY-MQFWPAKPVRYREVIGKYSIEVRXX 167
+ Y S + W D H ++ EK + WP P Y E +Y+ +R
Sbjct: 119 GKIQGYGSKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKTPSDYIEATSEYAKCLRLL 178
Query: 168 XXXXXXXXXXXXXXXXXYFSSDLSESPILL----INHYPPCPDPSLTLGLARHRDPGVVS 223
++ LL IN+YP CP P L LG+ H D ++
Sbjct: 179 ATKVFKALSVGLGLEPDRLEKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSALT 238
Query: 224 IVLQGDVHGLQVFKDEEWIGVEPIPHAFVVNIGYVLQIISNGKLKGAEHRVVTNSTDART 283
+L V GLQ+F + +W+ + +P + V++IG L+I+SNGK K HR + N R
Sbjct: 239 FILHNMVPGLQLFYEGKWVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVNKEKVRI 298
Query: 284 TVSFFVYPSNDSLI 297
+ + F P D ++
Sbjct: 299 SWAVFCEPPKDKIV 312
>pdb|1GP5|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Trans-Dihydroquercetin
pdb|1GP6|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Trans-Dihydroquercetin (With 30 Min Exposure To O2)
Length = 356
Score = 119 bits (298), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 81/314 (25%), Positives = 138/314 (43%), Gaps = 19/314 (6%)
Query: 1 IIIEIMEKLVSSWFNVRPLPEAYVFPPEQRP--GKLFFPQ----GKSIPVLDLGGQD--- 51
+ +E +E L S + +P+ Y+ P E+ +F + G +P +DL +
Sbjct: 2 VAVERVESLAKS--GIISIPKEYIRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDD 59
Query: 52 ---RKETIQLIMKASKEFGFFQVTNHGVSKDLIADTLALAKEFHAMPAEDKICECSKDPD 108
R+ I+ + KAS ++G + NHG+ DL+ +EF ++ E+K +
Sbjct: 60 EKIRENCIEELKKASLDWGVMHLINHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQAT 119
Query: 109 RSCKLYTSSGKYATEEKHYWRDCLIHPSHSFEKY-MQFWPAKPVRYREVIGKYSIEVRXX 167
+ Y S + W D H ++ EK + WP P Y E +Y+ +R
Sbjct: 120 GKIQGYGSKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKTPSDYIEATSEYAKCLRLL 179
Query: 168 XXXXXXXXXXXXXXXXXYFSSDLSESPILL----INHYPPCPDPSLTLGLARHRDPGVVS 223
++ LL IN+YP CP P L LG+ H D ++
Sbjct: 180 ATKVFKALSVGLGLEPDRLEKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSALT 239
Query: 224 IVLQGDVHGLQVFKDEEWIGVEPIPHAFVVNIGYVLQIISNGKLKGAEHRVVTNSTDART 283
+L V GLQ+F + +W+ + +P + V++IG L+I+SNGK K HR + N R
Sbjct: 240 FILHNMVPGLQLFYEGKWVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVNKEKVRI 299
Query: 284 TVSFFVYPSNDSLI 297
+ + F P D ++
Sbjct: 300 SWAVFCEPPKDKIV 313
>pdb|1GP4|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana
(Selenomethionine Substituted)
Length = 356
Score = 117 bits (293), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 81/314 (25%), Positives = 136/314 (43%), Gaps = 19/314 (6%)
Query: 1 IIIEIMEKLVSSWFNVRPLPEAYVFPPEQRP--GKLFFPQ----GKSIPVLDLGGQD--- 51
+ +E +E L S + +P+ Y+ P E+ +F + G +P +DL +
Sbjct: 2 VAVERVESLAKS--GIISIPKEYIRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDD 59
Query: 52 ---RKETIQLIMKASKEFGFFQVTNHGVSKDLIADTLALAKEFHAMPAEDKICECSKDPD 108
R+ I+ + KAS ++G + NHG+ DL +EF ++ E+K +
Sbjct: 60 EKIRENCIEELKKASLDWGVXHLINHGIPADLXERVKKAGEEFFSLSVEEKEKYANDQAT 119
Query: 109 RSCKLYTSSGKYATEEKHYWRDCLIHPSHSFEKY-MQFWPAKPVRYREVIGKYSIEVRXX 167
+ Y S + W D H ++ EK + WP P Y E +Y+ +R
Sbjct: 120 GKIQGYGSKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKTPSDYIEATSEYAKCLRLL 179
Query: 168 XXXXXXXXXXXXXXXXXYFSSDLSESPILL----INHYPPCPDPSLTLGLARHRDPGVVS 223
++ LL IN+YP CP P L LG+ H D ++
Sbjct: 180 ATKVFKALSVGLGLEPDRLEKEVGGLEELLLQXKINYYPKCPQPELALGVEAHTDVSALT 239
Query: 224 IVLQGDVHGLQVFKDEEWIGVEPIPHAFVVNIGYVLQIISNGKLKGAEHRVVTNSTDART 283
+L V GLQ+F + +W+ + +P + V +IG L+I+SNGK K HR + N R
Sbjct: 240 FILHNXVPGLQLFYEGKWVTAKCVPDSIVXHIGDTLEILSNGKYKSILHRGLVNKEKVRI 299
Query: 284 TVSFFVYPSNDSLI 297
+ + F P D ++
Sbjct: 300 SWAVFCEPPKDKIV 313
>pdb|1W9Y|A Chain A, The Structure Of Acc Oxidase
pdb|1WA6|X Chain X, The Structure Of Acc Oxidase
Length = 319
Score = 107 bits (266), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 78/276 (28%), Positives = 123/276 (44%), Gaps = 22/276 (7%)
Query: 40 KSIPVLDL---GGQDRKETIQLIMKASKEFGFFQVTNHGVSKDLIADTLALAKEFHAMPA 96
++ P++ L G +R T + I A + +GFF++ NHG+ ++ + DT+ + H
Sbjct: 2 ENFPIISLDKVNGVERAATXEXIKDACENWGFFELVNHGIPRE-VXDTVEKXTKGHYKKC 60
Query: 97 EDKICECSKDPDRSCKLYTS---SGKYATEEKHYWRDCLIHPSHSFEKYMQFWPAKPVRY 153
++ R +L S G A W + P Y
Sbjct: 61 XEQ---------RFKELVASKALEGVQAEVTDXDWESTFFLKHLPISNISEV-PDLDEEY 110
Query: 154 REVIGKYSIEVRXXXXXXXXXXXXXXXXXXXYFSSDL--SESPIL--LINHYPPCPDPSL 209
REV ++ + Y + S+ P +++YPPCP P L
Sbjct: 111 REVXRDFAKRLEKLAEELLDLLCENLGLEKGYLKNAFYGSKGPNFGTKVSNYPPCPKPDL 170
Query: 210 TLGLARHRDPGVVSIVLQGD-VHGLQVFKDEEWIGVEPIPHAFVVNIGYVLQIISNGKLK 268
GL H D G + ++ Q D V GLQ+ KD +WI V P H+ VVN+G L++I+NGK K
Sbjct: 171 IKGLRAHTDAGGIILLFQDDKVSGLQLLKDGQWIDVPPXRHSIVVNLGDQLEVITNGKYK 230
Query: 269 GAEHRVVTNSTDARTTVSFFVYPSNDSLIEPEKALV 304
HRV+ AR +++ F P +D++I P ALV
Sbjct: 231 SVXHRVIAQKDGARXSLASFYNPGSDAVIYPAPALV 266
>pdb|3OOX|A Chain A, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase
Family Protein (Cc_0200) From Caulobacter Crescentus At
1.44 A Resolution
pdb|3OOX|B Chain B, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase
Family Protein (Cc_0200) From Caulobacter Crescentus At
1.44 A Resolution
Length = 312
Score = 68.6 bits (166), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 65/281 (23%), Positives = 120/281 (42%), Gaps = 17/281 (6%)
Query: 47 LGGQDRKETIQLIMKASKEFGFFQVTNHGVSKDLIADTLALAKEFHAMPAEDKICECS-K 105
L +D Q + + + +GF ++++ + + I + AK F A+P E K K
Sbjct: 14 LYAKDFTRFAQELGASFERYGFAVLSDYDLDQARIDAAVDSAKAFFALPVETKKQYAGVK 73
Query: 106 DPDRS---CKLYTSSGKYATEEKHYW---RDCLIHPSHSFEKYM--QFWPAKPVRYREVI 157
R + T+ G + K +W RD + P H F + WPA+ ++ +
Sbjct: 74 GGARGYIPFGVETAKGADHYDLKEFWHXGRD--LPPGHRFRAHXADNVWPAEIPAFKHDV 131
Query: 158 GKYSIEVRXXXXXXXXXXXXXXXXXXXYFSSDLSE-SPILLINHYPPCPDPSLTLGLARH 216
+ +F + + + +L + HYPP P + + H
Sbjct: 132 SWLYNSLDGXGGKVLEAIATYLKLERDFFKPTVQDGNSVLRLLHYPPIPKDATGVRAGAH 191
Query: 217 RDPGVVSIVLQGDVHGLQVF-KDEEWIGVEPIPHAFVVNIGYVLQIISNGKLKGAEHRVV 275
D ++++L + GL+V +D +W+ + P P V+NIG L+ ++N L HRVV
Sbjct: 192 GDINTITLLLGAEEGGLEVLDRDGQWLPINPPPGCLVINIGDXLERLTNNVLPSTVHRVV 251
Query: 276 TNSTDART----TVSFFVYPSNDSLIEPEKALVNACDPPIY 312
+ R + FF++ ++D I+ + V A +P Y
Sbjct: 252 NPPPERRGVPRYSTPFFLHFASDYEIKTLQNCVTAENPDRY 292
>pdb|3ON7|A Chain A, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|B Chain B, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|C Chain C, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|D Chain D, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
Length = 280
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 53/108 (49%), Gaps = 7/108 (6%)
Query: 191 SESPILLINHYPPCP--DPSLTLGLARHRDPGVVSIVLQGDVHGLQV-FKDEEWIGVEPI 247
S +L I HYPP + + A H D +++++ + GLQV KD W+ V
Sbjct: 147 SHKTLLRILHYPPXTGDEEXGAIRAAAHEDINLITVLPTANEPGLQVKAKDGSWLDVPSD 206
Query: 248 PHAFVVNIGYVLQIISNGKLKGAEHRVV----TNSTDARTTVSFFVYP 291
++NIG LQ S+G HRV+ T+ T +R ++ F++P
Sbjct: 207 FGNIIINIGDXLQEASDGYFPSTSHRVINPEGTDKTKSRISLPLFLHP 254
>pdb|2BJS|A Chain A, Isopenicillin N Synthase C-Terminal Truncation Mutant
Length = 325
Score = 48.1 bits (113), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 66/306 (21%), Positives = 120/306 (39%), Gaps = 64/306 (20%)
Query: 41 SIPVLD---LGGQDRKETI---QLIMKASKEFGFFQVTNHGVSKDLIADTLALAKEFH-- 92
++P +D L G D+ + Q I AS++ GFF NHG++ ++ KEFH
Sbjct: 8 NVPKIDVSPLFGDDQAAKMRVAQQIDAASRDTGFFYAVNHGINVQRLSQK---TKEFHMS 64
Query: 93 ----------------------------AMPAEDKICE-CSKDPDRSCKLYTSSGKYATE 123
++P + + C +P+ + K T
Sbjct: 65 ITPEEKWDLAIRAYNKEHQDQVRAGYYLSIPGKKAVESFCYLNPNFTPDHPRIQAKTPTH 124
Query: 124 EKHYWRDCLIHPSHSFEKYMQFWPAKPVRYREVIGKYSIEVRXXXXXXXXXXXXXXXXXX 183
E + W D HP F+ + + + Y +V G S ++
Sbjct: 125 EVNVWPDETKHPG--FQDFAEQY------YWDVFGLSSALLKGYALALGKEENFFAR--- 173
Query: 184 XYFSSDLSESPILLINHYP---PCPDPSLT-------LGLARHRDPGVVSIVLQGDVHGL 233
+F D + + ++LI YP P P+ ++ L H D +++++ Q +V L
Sbjct: 174 -HFKPDDTLASVVLI-RYPYLDPYPEAAIKTAADGTKLSFEWHEDVSLITVLYQSNVQNL 231
Query: 234 QVFKDEEWIGVEPIPHAFVVNIGYVLQIISNGKLKGAEHRVVTNSTDARTTVSFFVYPSN 293
QV + +E +++N G + ++N K HRV + + R ++ FFV
Sbjct: 232 QVETAAGYQDIEADDTGYLINCGSYMAHLTNNYYKAPIHRVKWVNAE-RQSLPFFVNLGY 290
Query: 294 DSLIEP 299
DS+I+P
Sbjct: 291 DSVIDP 296
>pdb|1IPS|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Manganese Complex)
pdb|1IPS|B Chain B, Isopenicillin N Synthase From Aspergillus Nidulans
(Manganese Complex)
pdb|1QJE|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Ip1 -
Fe Complex)
pdb|1QJF|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Monocyclic Sulfoxide - Fe Complex)
pdb|1QIQ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Acmc
Fe Complex)
pdb|1HB4|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB3|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB2|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB1|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Anaerobic Acov Fe Complex)
pdb|1ODM|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(anaerobic Ac-vinylglycine Fe Complex)
pdb|1ODN|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Oxygen-Exposed Product From Anaerobic Ac-Vinylglycine
Fe Complex)
pdb|1OBN|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-cysteinyl-aminobutyrate-fe-no Complex
pdb|1OC1|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-cysteinyl-aminobutyrate-fe Complex
pdb|1UZW|A Chain A, Isopenicillin N Synthase With
L-D-(A-Aminoadipoyl)-L-Cysteinyl-D-Isodehydrovaline
pdb|1W03|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Glycine-Fe
Complex
pdb|1W04|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-Cysteinyl-Glycine-Fe-No Complex
pdb|1W05|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Alanine-Fe
Complex
pdb|1W06|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Alanine-Fe
No Complex
pdb|2BU9|A Chain A, Isopenicillin N Synthase Complexed With L-Aminoadipoyl-L-
Cysteinyl-L-Hexafluorovaline
pdb|1W3V|A Chain A, Isopenicillin N Synthase
D-(L-A-Aminoadipoyl)-(3r)-Methyl-L- Cysteine
D-A-Hydroxyisovaleryl Ester Complex (Anaerobic)
pdb|1W3X|A Chain A, Isopenicillin N Synthase
D-(L-A-Aminoadipoyl)-(3r)-Methyl-L- Cysteine
D-A-Hydroxyisovaleryl Ester Complex (Oxygen Exposed 5
Minutes 20 Bar)
pdb|2IVI|B Chain B, Isopenicillin N Synthase From Aspergillus Nidulans
(anaerobic Ac-methyl-cyclopropylglycine Fe Complex)
pdb|2IVJ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Anaerobic Ac-Cyclopropylglycine Fe Complex)
pdb|1BK0|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Acv-Fe
Complex)
pdb|1BLZ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Acv-Fe- No Complex)
pdb|2JB4|A Chain A, Isopenicillin N Synthase With A 2-Thiabicycloheptan-6-One
Product Analogue
pdb|2VAU|A Chain A, Isopenicillin N Synthase With Substrate Analogue Acomp (
Unexposed)
pdb|2VBB|A Chain A, Isopenicillin N Synthase With Substrate Analogue Acomp (
35minutes Oxygen Exposure)
pdb|2VBD|A Chain A, Isopenicillin N Synthase With Substrate Analogue L,l,l-
Acomp (unexposed)
pdb|2VBP|A Chain A, Isopenicillin N Synthase With Substrate Analogue
L,L,L-Acab (Unexposed)
pdb|2VCM|A Chain A, Isopenicillin N Synthase With Substrate Analogue Asmcov
pdb|2VE1|A Chain A, Isopenicillin N Synthase With Substrate Analogue Asmcov (
Oxygen Exposed 1min 20bar)
pdb|2WO7|A Chain A, Isopenicillin N Synthase With Substrate Analogue L,L,D-
Acd2ab (Unexposed)
pdb|2Y6F|A Chain A, Isopenicillin N Synthase With
Ac-D-S-Methyl-3r-Methylcysteine
pdb|2Y60|A Chain A, Isopenicillin N Synthase With Ac-D-Methionine
pdb|2Y86|A Chain A, Isopenicillin N Synthase With Ac-O-Methyl-D-Threonine
pdb|3ZKU|A Chain A, Isopenicillin N Synthase With Substrate Analogue Ahcv
Length = 331
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 66/306 (21%), Positives = 120/306 (39%), Gaps = 64/306 (20%)
Query: 41 SIPVLD---LGGQDRKETI---QLIMKASKEFGFFQVTNHGVSKDLIADTLALAKEFH-- 92
++P +D L G D+ + Q I AS++ GFF NHG++ ++ KEFH
Sbjct: 8 NVPKIDVSPLFGDDQAAKMRVAQQIDAASRDTGFFYAVNHGINVQRLSQK---TKEFHMS 64
Query: 93 ----------------------------AMPAEDKICE-CSKDPDRSCKLYTSSGKYATE 123
++P + + C +P+ + K T
Sbjct: 65 ITPEEKWDLAIRAYNKEHQDQVRAGYYLSIPGKKAVESFCYLNPNFTPDHPRIQAKTPTH 124
Query: 124 EKHYWRDCLIHPSHSFEKYMQFWPAKPVRYREVIGKYSIEVRXXXXXXXXXXXXXXXXXX 183
E + W D HP F+ + + + Y +V G S ++
Sbjct: 125 EVNVWPDETKHPG--FQDFAEQY------YWDVFGLSSALLKGYALALGKEENFFAR--- 173
Query: 184 XYFSSDLSESPILLINHYP---PCPDPSLT-------LGLARHRDPGVVSIVLQGDVHGL 233
+F D + + ++LI YP P P+ ++ L H D +++++ Q +V L
Sbjct: 174 -HFKPDDTLASVVLI-RYPYLDPYPEAAIKTAADGTKLSFEWHEDVSLITVLYQSNVQNL 231
Query: 234 QVFKDEEWIGVEPIPHAFVVNIGYVLQIISNGKLKGAEHRVVTNSTDARTTVSFFVYPSN 293
QV + +E +++N G + ++N K HRV + + R ++ FFV
Sbjct: 232 QVETAAGYQDIEADDTGYLINCGSYMAHLTNNYYKAPIHRVKWVNAE-RQSLPFFVNLGY 290
Query: 294 DSLIEP 299
DS+I+P
Sbjct: 291 DSVIDP 296
>pdb|3T2L|A Chain A, Crystal Structure Of A Putative Cell Adhesion Protein
(Bf1858) From Bacteroides Fragilis Nctc 9343 At 2.33 A
Resolution
Length = 308
Score = 28.9 bits (63), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 14/64 (21%), Positives = 28/64 (43%)
Query: 199 NHYPPCPDPSLTLGLARHRDPGVVSIVLQGDVHGLQVFKDEEWIGVEPIPHAFVVNIGYV 258
N++ PC +TL + G ++I + G +H + + + PH V YV
Sbjct: 162 NYFXPCEISKITLKNSNLIKKGTINIAVDGSIHSSETGNYDLTTVTDASPHTLSVGESYV 221
Query: 259 LQII 262
+++
Sbjct: 222 CRVL 225
>pdb|3SNP|A Chain A, Crystal Structure Analysis Of Iron Regulatory Protein 1 In
Complex With Ferritin H Ire Rna
pdb|3SNP|B Chain B, Crystal Structure Analysis Of Iron Regulatory Protein 1 In
Complex With Ferritin H Ire Rna
pdb|3SN2|A Chain A, Crystal Structure Analysis Of Iron Regulatory Protein 1 In
Complex With Transferrin Receptor Ire B Rna
Length = 908
Score = 28.9 bits (63), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 35/72 (48%), Gaps = 9/72 (12%)
Query: 11 SSWFNVRPLPEAYVFPPEQRPGKLFFPQGKSIPVLDLGGQDRKETIQLIMKASKEFGFFQ 70
++ N+R L F +Q P + P G+++ V D + ++E LI+ A KE+G
Sbjct: 741 GTFANIRLLNR---FLNKQAPQTIHLPSGETLDVFDAAERYQQEGHPLIVLAGKEYG--- 794
Query: 71 VTNHGVSKDLIA 82
G S+D A
Sbjct: 795 ---SGSSRDWAA 803
>pdb|1L4I|A Chain A, Crystal Structure Of The Periplasmic Chaperone Sfae
pdb|1L4I|B Chain B, Crystal Structure Of The Periplasmic Chaperone Sfae
Length = 206
Score = 28.1 bits (61), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 11/17 (64%), Positives = 12/17 (70%)
Query: 20 PEAYVFPPEQRPGKLFF 36
P+ V PPEQ PGKL F
Sbjct: 117 PQGLVIPPEQAPGKLEF 133
>pdb|1EIA|A Chain A, X-Ray Crystal Structure Of Equine Infectious Anemia
Virus (Eiav) Capsid Protein P26
Length = 207
Score = 27.7 bits (60), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 18/31 (58%)
Query: 1 IIIEIMEKLVSSWFNVRPLPEAYVFPPEQRP 31
I+++ ++K+ W N PLP A + P Q P
Sbjct: 54 ILLDAIDKIADDWDNRHPLPNAPLVAPPQGP 84
>pdb|2EIA|A Chain A, X-Ray Crystal Structure Of Equine Infectious Anemia
Virus (Eiav) Capsid Protein P26
pdb|2EIA|B Chain B, X-Ray Crystal Structure Of Equine Infectious Anemia
Virus (Eiav) Capsid Protein P26
Length = 206
Score = 27.7 bits (60), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 18/31 (58%)
Query: 1 IIIEIMEKLVSSWFNVRPLPEAYVFPPEQRP 31
I+++ ++K+ W N PLP A + P Q P
Sbjct: 53 ILLDAIDKIADDWDNRHPLPNAPLVAPPQGP 83
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.138 0.422
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,045,707
Number of Sequences: 62578
Number of extensions: 397393
Number of successful extensions: 819
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 796
Number of HSP's gapped (non-prelim): 17
length of query: 344
length of database: 14,973,337
effective HSP length: 100
effective length of query: 244
effective length of database: 8,715,537
effective search space: 2126591028
effective search space used: 2126591028
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)