BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048025
(246 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1PCI|A Chain A, Procaricain
pdb|1PCI|B Chain B, Procaricain
pdb|1PCI|C Chain C, Procaricain
Length = 322
Score = 201 bits (512), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 103/241 (42%), Positives = 145/241 (60%), Gaps = 5/241 (2%)
Query: 6 IVAKHEQWMAQHGRTYKDELEKAMRLNIFKQNLEYIGKANKEGNRTYKLGTNEFSDLTNE 65
++ WM H + Y++ EK R IFK NL YI + NK+ N +Y LG NEF+DL+N+
Sbjct: 18 LIQLFNSWMLNHNKFYENVDEKLYRFEIFKDNLNYIDETNKK-NNSYWLGLNEFADLSND 76
Query: 66 EFRASYTGYNTPVPSLSRQSSLPSNFKYQNVTDVPTSIDWREKGAVTHIKDQGQTGSSWA 125
EF Y G + + + S F +++ ++P ++DWR+KGAVT ++ QG GS WA
Sbjct: 77 EFNEKYVG---SLIDATIEQSYDEEFINEDIVNLPENVDWRKKGAVTPVRHQGSCGSCWA 133
Query: 126 FSAVAAVEGITQITSRKLIELSGQQLVDCSTDNHGCSGGLMDKAFEYIIENKGLASEADY 185
FSAVA VEGI +I + KL+ELS Q+LVDC +HGC GG A EY+ +N G+ + Y
Sbjct: 134 FSAVATVEGINKIRTGKLVELSEQELVDCERRSHGCKGGYPPYALEYVAKN-GIHLRSKY 192
Query: 186 PYRREQGTCDKQKEKAVAATISKYEDLPQGDEQALLQAVSKQPVSVCVEASGRAFHFYKS 245
PY+ +QGTC ++ S + +E LL A++KQPVSV VE+ GR F YK
Sbjct: 193 PYKAKQGTCRAKQVGGPIVKTSGVGRVQPNNEGNLLNAIAKQPVSVVVESKGRPFQLYKG 252
Query: 246 G 246
G
Sbjct: 253 G 253
>pdb|1S4V|A Chain A, The 2.0 A Crystal Structure Of The Kdel-Tailed Cysteine
Endopeptidase Functioning In Programmed Cell Death Of
Ricinus Communis Endosperm
pdb|1S4V|B Chain B, The 2.0 A Crystal Structure Of The Kdel-Tailed Cysteine
Endopeptidase Functioning In Programmed Cell Death Of
Ricinus Communis Endosperm
Length = 229
Score = 187 bits (475), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 87/149 (58%), Positives = 109/149 (73%), Gaps = 1/149 (0%)
Query: 99 VPTSIDWREKGAVTHIKDQGQTGSSWAFSAVAAVEGITQITSRKLIELSGQQLVDCSTD- 157
VP S+DWR+KGAVT +KDQGQ GS WAFS + AVEGI QI + KL+ LS Q+LVDC TD
Sbjct: 2 VPASVDWRKKGAVTSVKDQGQCGSCWAFSTIVAVEGINQIKTNKLVSLSEQELVDCDTDQ 61
Query: 158 NHGCSGGLMDKAFEYIIENKGLASEADYPYRREQGTCDKQKEKAVAATISKYEDLPQGDE 217
N GC+GGLMD AFE+I + G+ +EA+YPY GTCD KE A A +I +E++P+ DE
Sbjct: 62 NQGCNGGLMDYAFEFIKQRGGITTEANYPYEAYDGTCDVSKENAPAVSIDGHENVPENDE 121
Query: 218 QALLQAVSKQPVSVCVEASGRAFHFYKSG 246
ALL+AV+ QPVSV ++A G F FY G
Sbjct: 122 NALLKAVANQPVSVAIDAGGSDFQFYSEG 150
>pdb|2C0Y|A Chain A, The Crystal Structure Of A Cys25ala Mutant Of Human
Procathepsin S
Length = 315
Score = 182 bits (463), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 104/253 (41%), Positives = 151/253 (59%), Gaps = 17/253 (6%)
Query: 3 EPSIVAKHEQWMAQHGRTYKDELEKAMRLNIFKQNLEYIGKANKE---GNRTYKLGTNEF 59
+P++ W +G+ YK++ E+A+R I+++NL+++ N E G +Y LG N
Sbjct: 5 DPTLDHHWHLWKKTYGKQYKEKNEEAVRRLIWEKNLKFVMLHNLEHSMGMHSYDLGMNHL 64
Query: 60 SDLTNEEFRASYTGYNTPVPSLSRQSSLPSNFKYQNVTD--VPTSIDWREKGAVTHIKDQ 117
D+T+EE + + P S N Y++ + +P S+DWREKG VT +K Q
Sbjct: 65 GDMTSEEVMSLMSSLRVP-------SQWQRNITYKSNPNRILPDSVDWREKGCVTEVKYQ 117
Query: 118 GQTGSSWAFSAVAAVEGITQITSRKLIELSGQQLVDCSTD---NHGCSGGLMDKAFEYII 174
G G++WAFSAV A+E ++ + KL+ LS Q LVDCST+ N GC+GG M AF+YII
Sbjct: 118 GSCGAAWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEKYGNKGCNGGFMTTAFQYII 177
Query: 175 ENKGLASEADYPYRREQGTCDKQKEKAVAATISKYEDLPQGDEQALLQAVS-KQPVSVCV 233
+NKG+ S+A YPY+ C + K AAT SKY +LP G E L +AV+ K PVSV V
Sbjct: 178 DNKGIDSDASYPYKAMDQKC-QYDSKYRAATCSKYTELPYGREDVLKEAVANKGPVSVGV 236
Query: 234 EASGRAFHFYKSG 246
+A +F Y+SG
Sbjct: 237 DARHPSFFLYRSG 249
>pdb|1CQD|A Chain A, The 2.1 Angstrom Structure Of A Cysteine Protease With
Proline Specificity From Ginger Rhizome, Zingiber
Officinale
pdb|1CQD|B Chain B, The 2.1 Angstrom Structure Of A Cysteine Protease With
Proline Specificity From Ginger Rhizome, Zingiber
Officinale
pdb|1CQD|C Chain C, The 2.1 Angstrom Structure Of A Cysteine Protease With
Proline Specificity From Ginger Rhizome, Zingiber
Officinale
pdb|1CQD|D Chain D, The 2.1 Angstrom Structure Of A Cysteine Protease With
Proline Specificity From Ginger Rhizome, Zingiber
Officinale
Length = 221
Score = 176 bits (446), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 82/149 (55%), Positives = 105/149 (70%), Gaps = 1/149 (0%)
Query: 98 DVPTSIDWREKGAVTHIKDQGQTGSSWAFSAVAAVEGITQITSRKLIELSGQQLVDCSTD 157
D+P SIDWRE GAV +K+QG GS WAFS VAAVEGI QI + LI LS QQLVDC+T
Sbjct: 2 DLPDSIDWRENGAVVPVKNQGGCGSCWAFSTVAAVEGINQIVTGDLISLSEQQLVDCTTA 61
Query: 158 NHGCSGGLMDKAFEYIIENKGLASEADYPYRREQGTCDKQKEKAVAATISKYEDLPQGDE 217
NHGC GG M+ AF++I+ N G+ SE YPYR + G C+ V +I YE++P +E
Sbjct: 62 NHGCRGGWMNPAFQFIVNNGGINSEETYPYRGQDGICNSTVNAPV-VSIDSYENVPSHNE 120
Query: 218 QALLQAVSKQPVSVCVEASGRAFHFYKSG 246
Q+L +AV+ QPVSV ++A+GR F Y+SG
Sbjct: 121 QSLQKAVANQPVSVTMDAAGRDFQLYRSG 149
>pdb|2FO5|A Chain A, Crystal Structure Of Recombinant Barley Cysteine
Endoprotease B Isoform 2 (Ep-B2) In Complex With
Leupeptin
pdb|2FO5|B Chain B, Crystal Structure Of Recombinant Barley Cysteine
Endoprotease B Isoform 2 (Ep-B2) In Complex With
Leupeptin
pdb|2FO5|C Chain C, Crystal Structure Of Recombinant Barley Cysteine
Endoprotease B Isoform 2 (Ep-B2) In Complex With
Leupeptin
pdb|2FO5|D Chain D, Crystal Structure Of Recombinant Barley Cysteine
Endoprotease B Isoform 2 (Ep-B2) In Complex With
Leupeptin
Length = 262
Score = 175 bits (444), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 85/155 (54%), Positives = 107/155 (69%), Gaps = 4/155 (2%)
Query: 96 VTDVPTSIDWREKGAVTHIKDQGQTGSSWAFSAVAAVEGITQITSRKLIELSGQQLVDCS 155
V+D+P S+DWR+KGAVT +KDQG+ GS WAFS V +VEGI I + L+ LS Q+L+DC
Sbjct: 1 VSDLPPSVDWRQKGAVTGVKDQGKCGSCWAFSTVVSVEGINAIRTGSLVSLSEQELIDCD 60
Query: 156 T-DNHGCSGGLMDKAFEYIIENKGLASEADYPYRREQGTCDKQK---EKAVAATISKYED 211
T DN GC GGLMD AFEYI N GL +EA YPYR +GTC+ + V I ++D
Sbjct: 61 TADNDGCQGGLMDNAFEYIKNNGGLITEAAYPYRAARGTCNVARAAQNSPVVVHIDGHQD 120
Query: 212 LPQGDEQALLQAVSKQPVSVCVEASGRAFHFYKSG 246
+P E+ L +AV+ QPVSV VEASG+AF FY G
Sbjct: 121 VPANSEEDLARAVANQPVSVAVEASGKAFMFYSEG 155
>pdb|3TNX|A Chain A, Structure Of The Precursor Of A Thermostable Variant Of
Papain At 2.6 Angstroem Resolution
pdb|3TNX|C Chain C, Structure Of The Precursor Of A Thermostable Variant Of
Papain At 2.6 Angstroem Resolution
pdb|3USV|A Chain A, Structure Of The Precursor Of A Thermostable Variant Of
Papain At 3.8 A Resolution From A Crystal Soaked At Ph 4
pdb|3USV|C Chain C, Structure Of The Precursor Of A Thermostable Variant Of
Papain At 3.8 A Resolution From A Crystal Soaked At Ph 4
Length = 363
Score = 172 bits (436), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 93/244 (38%), Positives = 140/244 (57%), Gaps = 10/244 (4%)
Query: 6 IVAKHEQWMAQHGRTYKDELEKAMRLNIFKQNLEYIGKANKEGNRTYKLGTNEFSDLTNE 65
++ E WM +H + YK+ EK R IFK NL+YI + NK+ N +Y LG N F+D++N+
Sbjct: 62 LIQLFESWMLKHNKIYKNIDEKIYRFEIFKDNLKYIDETNKK-NNSYWLGLNVFADMSND 120
Query: 66 EFRASYTGY---NTPVPSLSRQSSLPSNFKYQNVTDVPTSIDWREKGAVTHIKDQGQTGS 122
EF+ YTG N LS + L ++P +DWR+KGAVT +K+QG GS
Sbjct: 121 EFKEKYTGSIAGNYTTTELSYEEVLN-----DGDVNIPEYVDWRQKGAVTPVKNQGSCGS 175
Query: 123 SWAFSAVAAVEGITQITSRKLIELSGQQLVDCSTDNHGCSGGLMDKAFEYIIENKGLASE 182
+WAFSAV+ +E I +I + L E S Q+L+DC ++GC+GG A + ++ G+
Sbjct: 176 AWAFSAVSTIESIIKIRTGNLNEYSEQELLDCDRRSYGCNGGYPWSALQ-LVAQYGIHYR 234
Query: 183 ADYPYRREQGTCDKQKEKAVAATISKYEDLPQGDEQALLQAVSKQPVSVCVEASGRAFHF 242
YPY Q C +++ AA + +E ALL +++ QPVSV +EA+G+ F
Sbjct: 235 NTYPYEGVQRYCRSREKGPYAAKTDGVRQVQPYNEGALLYSIANQPVSVVLEAAGKDFQL 294
Query: 243 YKSG 246
Y+ G
Sbjct: 295 YRGG 298
>pdb|7PCK|A Chain A, Crystal Structure Of Wild Type Human Procathepsin K
pdb|7PCK|B Chain B, Crystal Structure Of Wild Type Human Procathepsin K
pdb|7PCK|C Chain C, Crystal Structure Of Wild Type Human Procathepsin K
pdb|7PCK|D Chain D, Crystal Structure Of Wild Type Human Procathepsin K
pdb|1BY8|A Chain A, The Crystal Structure Of Human Procathepsin K
Length = 314
Score = 169 bits (427), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 97/251 (38%), Positives = 147/251 (58%), Gaps = 9/251 (3%)
Query: 1 MHEPSIVAKH-EQWMAQHGRTYKDELEKAMRLNIFKQNLEYIGKANKE---GNRTYKLGT 56
++ I+ H E W H + Y +++++ R I+++NL+YI N E G TY+L
Sbjct: 1 LYPEEILDTHWELWKKTHRKQYNNKVDEISRRLIWEKNLKYISIHNLEASLGVHTYELAM 60
Query: 57 NEFSDLTNEEFRASYTGYNTPVPSLSRQSSLPSNFKYQNVTDVPTSIDWREKGAVTHIKD 116
N D+T+EE TG P LS S + + + P S+D+R+KG VT +K+
Sbjct: 61 NHLGDMTSEEVVQKMTGLKVP---LSHSRSNDTLYIPEWEGRAPDSVDYRKKGYVTPVKN 117
Query: 117 QGQTGSSWAFSAVAAVEGITQITSRKLIELSGQQLVDCSTDNHGCSGGLMDKAFEYIIEN 176
QGQ GS WAFS+V A+EG + + KL+ LS Q LVDC ++N GC GG M AF+Y+ +N
Sbjct: 118 QGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVSENDGCGGGYMTNAFQYVQKN 177
Query: 177 KGLASEADYPYRREQGTCDKQKEKAVAATISKYEDLPQGDEQALLQAVSK-QPVSVCVEA 235
+G+ SE YPY ++ +C AA Y ++P+G+E+AL +AV++ PVSV ++A
Sbjct: 178 RGIDSEDAYPYVGQEESC-MYNPTGKAAKCRGYREIPEGNEKALKRAVARVGPVSVAIDA 236
Query: 236 SGRAFHFYKSG 246
S +F FY G
Sbjct: 237 SLTSFQFYSKG 247
>pdb|1CJL|A Chain A, Crystal Structure Of A Cysteine Protease Proform
Length = 312
Score = 168 bits (425), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 99/248 (39%), Positives = 142/248 (57%), Gaps = 15/248 (6%)
Query: 5 SIVAKHEQWMAQHGRTYKDELEKAMRLNIFKQNLEYIGKAN---KEGNRTYKLGTNEFSD 61
S+ A+ +W A H R Y E+ R ++++N++ I N +EG ++ + N F D
Sbjct: 3 SLEAQWTKWKAMHNRLYGMN-EEGWRRAVWEKNMKMIELHNQEYREGKHSFTMAMNAFGD 61
Query: 62 LTNEEFRASYTGYNTPVPSLSRQSSLPSNFKYQNVTDVPTSIDWREKGAVTHIKDQGQTG 121
+T+EEFR G P + P + + P S+DWREKG VT +K+QGQ G
Sbjct: 62 MTSEEFRQVMNGLQNRKPRKGKVFQEPLFY------EAPRSVDWREKGYVTPVKNQGQCG 115
Query: 122 SSWAFSAVAAVEGITQITSRKLIELSGQQLVDCS--TDNHGCSGGLMDKAFEYIIENKGL 179
SSWAFSA A+EG + +LI LS Q LVDCS N GC+GGLMD AF+Y+ +N GL
Sbjct: 116 SSWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPEGNEGCNGGLMDYAFQYVQDNGGL 175
Query: 180 ASEADYPYRREQGTCDKQKEKAVAATISKYEDLPQGDEQALLQAVSK-QPVSVCVEASGR 238
SE YPY + +C K K A + + D+P+ E+AL++AV+ P+SV ++A
Sbjct: 176 DSEESYPYEATEESC-KYNPKYSVANDAGFVDIPK-QEKALMKAVATVGPISVAIDAGHE 233
Query: 239 AFHFYKSG 246
+F FYK G
Sbjct: 234 SFLFYKEG 241
>pdb|1CS8|A Chain A, Crystal Structure Of Procathepsin L
Length = 316
Score = 167 bits (424), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 98/248 (39%), Positives = 142/248 (57%), Gaps = 15/248 (6%)
Query: 5 SIVAKHEQWMAQHGRTYKDELEKAMRLNIFKQNLEYIGKAN---KEGNRTYKLGTNEFSD 61
S+ A+ +W A H R Y E+ R ++++N++ I N +EG ++ + N F D
Sbjct: 7 SLEAQWTKWKAMHNRLYGMN-EEGWRRAVWEKNMKMIELHNQEYREGKHSFTMAMNAFGD 65
Query: 62 LTNEEFRASYTGYNTPVPSLSRQSSLPSNFKYQNVTDVPTSIDWREKGAVTHIKDQGQTG 121
+T+EEFR G+ P + P + + P S+DWREKG VT +K+QGQ G
Sbjct: 66 MTSEEFRQVMNGFQNRKPRKGKVFQEPLFY------EAPRSVDWREKGYVTPVKNQGQCG 119
Query: 122 SSWAFSAVAAVEGITQITSRKLIELSGQQLVDCS--TDNHGCSGGLMDKAFEYIIENKGL 179
S WAFSA A+EG + +LI LS Q LVDCS N GC+GGLMD AF+Y+ +N GL
Sbjct: 120 SXWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQGNEGCNGGLMDYAFQYVQDNGGL 179
Query: 180 ASEADYPYRREQGTCDKQKEKAVAATISKYEDLPQGDEQALLQAVSK-QPVSVCVEASGR 238
SE YPY + +C K K A + + D+P+ E+AL++AV+ P+SV ++A
Sbjct: 180 DSEESYPYEATEESC-KYNPKYSVANDAGFVDIPK-QEKALMKAVATVGPISVAIDAGHE 237
Query: 239 AFHFYKSG 246
+F FYK G
Sbjct: 238 SFLFYKEG 245
>pdb|1IWD|A Chain A, Proposed Amino Acid Sequence And The 1.63 Angstrom X-ray
Crystal Structure Of A Plant Cysteine Protease Ervatamin
B: Insight Into The Structural Basis Of Its Stability
And Substrate Specificity
Length = 215
Score = 156 bits (395), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 75/148 (50%), Positives = 103/148 (69%), Gaps = 2/148 (1%)
Query: 99 VPTSIDWREKGAVTHIKDQGQTGSSWAFSAVAAVEGITQITSRKLIELSGQQLVDCSTDN 158
+P+ +DWR KGAV IK+Q Q GS WAFSAVAAVE I +I + +LI LS Q+LVDC T +
Sbjct: 1 LPSFVDWRSKGAVNSIKNQKQCGSCWAFSAVAAVESINKIRTGQLISLSEQELVDCDTAS 60
Query: 159 HGCSGGLMDKAFEYIIENKGLASEADYPYRREQGTCDKQKEKAVAATISKYEDLPQGDEQ 218
HGC+GG M+ AF+YII N G+ ++ +YPY QG+C + + V +I+ ++ + + +E
Sbjct: 61 HGCNGGWMNNAFQYIITNGGIDTQQNYPYSAVQGSCKPYRLRVV--SINGFQRVTRNNES 118
Query: 219 ALLQAVSKQPVSVCVEASGRAFHFYKSG 246
AL AV+ QPVSV VEA+G F Y SG
Sbjct: 119 ALQSAVASQPVSVTVEAAGAPFQHYSSG 146
>pdb|3P5U|A Chain A, Actinidin From Actinidia Arguta Planch (Sarusashi)
pdb|3P5V|A Chain A, Actinidin From Actinidia Arguta Planch (Sarusashi)
pdb|3P5X|A Chain A, Actinidin From Actinidia Arguta Planch (Sarusashi)
Length = 220
Score = 155 bits (392), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 79/152 (51%), Positives = 101/152 (66%), Gaps = 6/152 (3%)
Query: 99 VPTSIDWREKGAVTHIKDQGQTGSSWAFSAVAAVEGITQITSRKLIELSGQQLVDC--ST 156
+P +DWR GAV IKDQGQ GS WAFS +AAVEGI +I + LI LS Q+LVDC +
Sbjct: 1 LPDYVDWRSSGAVVDIKDQGQCGSXWAFSTIAAVEGINKIATGDLISLSEQELVDCGRTQ 60
Query: 157 DNHGCSGGLMDKAFEYIIENKGLASEADYPYRREQGTC--DKQKEKAVAATISKYEDLPQ 214
+ GC GG M F++II N G+ +EA+YPY E+G C D Q+EK V +I YE++P
Sbjct: 61 NTRGCDGGFMTDGFQFIINNGGINTEANYPYTAEEGQCNLDLQQEKYV--SIDTYENVPY 118
Query: 215 GDEQALLQAVSKQPVSVCVEASGRAFHFYKSG 246
+E AL AV+ QPVSV +EA+G F Y SG
Sbjct: 119 NNEWALQTAVAYQPVSVALEAAGYNFQHYSSG 150
>pdb|3P5W|A Chain A, Actinidin From Actinidia Arguta Planch (Sarusashi)
Length = 220
Score = 155 bits (392), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 79/152 (51%), Positives = 101/152 (66%), Gaps = 6/152 (3%)
Query: 99 VPTSIDWREKGAVTHIKDQGQTGSSWAFSAVAAVEGITQITSRKLIELSGQQLVDC--ST 156
+P +DWR GAV IKDQGQ GS WAFS +AAVEGI +I + LI LS Q+LVDC +
Sbjct: 1 LPDYVDWRSSGAVVDIKDQGQCGSCWAFSTIAAVEGINKIATGDLISLSEQELVDCGRTQ 60
Query: 157 DNHGCSGGLMDKAFEYIIENKGLASEADYPYRREQGTC--DKQKEKAVAATISKYEDLPQ 214
+ GC GG M F++II N G+ +EA+YPY E+G C D Q+EK V +I YE++P
Sbjct: 61 NTRGCDGGFMTDGFQFIINNGGINTEANYPYTAEEGQCNLDLQQEKYV--SIDTYENVPY 118
Query: 215 GDEQALLQAVSKQPVSVCVEASGRAFHFYKSG 246
+E AL AV+ QPVSV +EA+G F Y SG
Sbjct: 119 NNEWALQTAVAYQPVSVALEAAGYNFQHYSSG 150
>pdb|2BDZ|A Chain A, Mexicain From Jacaratia Mexicana
pdb|2BDZ|B Chain B, Mexicain From Jacaratia Mexicana
pdb|2BDZ|C Chain C, Mexicain From Jacaratia Mexicana
pdb|2BDZ|D Chain D, Mexicain From Jacaratia Mexicana
Length = 214
Score = 154 bits (390), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 70/147 (47%), Positives = 100/147 (68%), Gaps = 1/147 (0%)
Query: 100 PTSIDWREKGAVTHIKDQGQTGSSWAFSAVAAVEGITQITSRKLIELSGQQLVDCSTDNH 159
P SIDWREKGAVT +K+Q GS WAFS VA +EGI +I + +LI LS Q+L+DC +H
Sbjct: 2 PESIDWREKGAVTPVKNQNPCGSCWAFSTVATIEGINKIITGQLISLSEQELLDCERRSH 61
Query: 160 GCSGGLMDKAFEYIIENKGLASEADYPYRREQGTCDKQKEKAVAATISKYEDLPQGDEQA 219
GC GG + +Y+++N G+ +E +YPY ++QG C + +K I+ Y+ +P DE +
Sbjct: 62 GCDGGYQTTSLQYVVDN-GVHTEREYPYEKKQGRCRAKDKKGPKVYITGYKYVPANDEIS 120
Query: 220 LLQAVSKQPVSVCVEASGRAFHFYKSG 246
L+QA++ QPVSV ++ GR F FYK G
Sbjct: 121 LIQAIANQPVSVVTDSRGRGFQFYKGG 147
>pdb|2PNS|A Chain A, 1.9 Angstrom Resolution Crystal Structure Of A Plant
Cysteine Protease Ervatamin-C Refinement With Cdna
Derived Amino Acid Sequence
pdb|2PNS|B Chain B, 1.9 Angstrom Resolution Crystal Structure Of A Plant
Cysteine Protease Ervatamin-C Refinement With Cdna
Derived Amino Acid Sequence
pdb|2PRE|A Chain A, Crystal Structure Of Plant Cysteine Protease Ervatamin-C
Complexed With Irreversible Inhibitor E-64 At 2.7 A
Resolution
pdb|2PRE|B Chain B, Crystal Structure Of Plant Cysteine Protease Ervatamin-C
Complexed With Irreversible Inhibitor E-64 At 2.7 A
Resolution
Length = 208
Score = 152 bits (383), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 74/148 (50%), Positives = 98/148 (66%), Gaps = 3/148 (2%)
Query: 99 VPTSIDWREKGAVTHIKDQGQTGSSWAFSAVAAVEGITQITSRKLIELSGQQLVDCSTDN 158
+P IDWR+KGAVT +K+QG+ GS WAFS V+ VE I QI + LI LS QQLVDC+ N
Sbjct: 1 LPEQIDWRKKGAVTPVKNQGKCGSCWAFSTVSTVESINQIRTGNLISLSEQQLVDCNKKN 60
Query: 159 HGCSGGLMDKAFEYIIENKGLASEADYPYRREQGTCDKQKEKAVAATISKYEDLPQGDEQ 218
HGC GG A++YII+N G+ +EA+YPY+ QG C K+ I Y+ +P +E
Sbjct: 61 HGCKGGAFVYAYQYIIDNGGIDTEANYPYKAVQGPCRAAKK---VVRIDGYKGVPHCNEN 117
Query: 219 ALLQAVSKQPVSVCVEASGRAFHFYKSG 246
AL +AV+ QP V ++AS + F YKSG
Sbjct: 118 ALKKAVASQPSVVAIDASSKQFQHYKSG 145
>pdb|3KWN|A Chain A, Cathepsin S In Complex With Thioether Acetamide P3
Inhibitor
pdb|3KWN|B Chain B, Cathepsin S In Complex With Thioether Acetamide P3
Inhibitor
pdb|3MPF|A Chain A, Crystal Structure Of Human Cathepsin-S C25s Mutant With
Bound Drug
pdb|3MPF|B Chain B, Crystal Structure Of Human Cathepsin-S C25s Mutant With
Bound Drug
Length = 219
Score = 150 bits (380), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 79/152 (51%), Positives = 102/152 (67%), Gaps = 5/152 (3%)
Query: 99 VPTSIDWREKGAVTHIKDQGQTGSSWAFSAVAAVEGITQITSRKLIELSGQQLVDCSTD- 157
+P S+DWREKG VT +K QG G+SWAFSAV A+E ++ + KL+ LS Q LVDCST+
Sbjct: 1 LPDSVDWREKGCVTEVKYQGSCGASWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEK 60
Query: 158 --NHGCSGGLMDKAFEYIIENKGLASEADYPYRREQGTCDKQKEKAVAATISKYEDLPQG 215
N GC+GG M AF+YII+NKG+ S+A YPY+ C + K AAT SKY +LP G
Sbjct: 61 YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQKC-QYDSKYRAATCSKYTELPYG 119
Query: 216 DEQALLQAVS-KQPVSVCVEASGRAFHFYKSG 246
E L +AV+ K PVSV V+A +F Y+SG
Sbjct: 120 REDVLKEAVANKGPVSVGVDARHPSFFLYRSG 151
>pdb|3MPE|A Chain A, Crystal Structure Of Human Cathepsin-S C25s Mutant With
Bound Drug
pdb|3MPE|B Chain B, Crystal Structure Of Human Cathepsin-S C25s Mutant With
Bound Drug
Length = 220
Score = 150 bits (379), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 79/152 (51%), Positives = 102/152 (67%), Gaps = 5/152 (3%)
Query: 99 VPTSIDWREKGAVTHIKDQGQTGSSWAFSAVAAVEGITQITSRKLIELSGQQLVDCSTD- 157
+P S+DWREKG VT +K QG G+SWAFSAV A+E ++ + KL+ LS Q LVDCST+
Sbjct: 2 LPDSVDWREKGCVTEVKYQGSCGASWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEK 61
Query: 158 --NHGCSGGLMDKAFEYIIENKGLASEADYPYRREQGTCDKQKEKAVAATISKYEDLPQG 215
N GC+GG M AF+YII+NKG+ S+A YPY+ C + K AAT SKY +LP G
Sbjct: 62 YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQKC-QYDSKYRAATCSKYTELPYG 120
Query: 216 DEQALLQAVS-KQPVSVCVEASGRAFHFYKSG 246
E L +AV+ K PVSV V+A +F Y+SG
Sbjct: 121 REDVLKEAVANKGPVSVGVDARHPSFFLYRSG 152
>pdb|3IEJ|A Chain A, Pyrazole-Based Cathepsin S Inhibitors With Arylalkynes As
P1 Binding Elements
pdb|3IEJ|B Chain B, Pyrazole-Based Cathepsin S Inhibitors With Arylalkynes As
P1 Binding Elements
Length = 222
Score = 150 bits (379), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 79/152 (51%), Positives = 102/152 (67%), Gaps = 5/152 (3%)
Query: 99 VPTSIDWREKGAVTHIKDQGQTGSSWAFSAVAAVEGITQITSRKLIELSGQQLVDCSTD- 157
+P S+DWREKG VT +K QG G+SWAFSAV A+E ++ + KL+ LS Q LVDCST+
Sbjct: 3 LPDSVDWREKGCVTEVKYQGSCGASWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEK 62
Query: 158 --NHGCSGGLMDKAFEYIIENKGLASEADYPYRREQGTCDKQKEKAVAATISKYEDLPQG 215
N GC+GG M AF+YII+NKG+ S+A YPY+ C + K AAT SKY +LP G
Sbjct: 63 YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQKC-QYDSKYRAATCSKYTELPYG 121
Query: 216 DEQALLQAVS-KQPVSVCVEASGRAFHFYKSG 246
E L +AV+ K PVSV V+A +F Y+SG
Sbjct: 122 REDVLKEAVANKGPVSVGVDARHPSFFLYRSG 153
>pdb|1GLO|A Chain A, Crystal Structure Of Cys25ser Mutant Of Human Cathepsin S
Length = 217
Score = 150 bits (379), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 79/152 (51%), Positives = 102/152 (67%), Gaps = 5/152 (3%)
Query: 99 VPTSIDWREKGAVTHIKDQGQTGSSWAFSAVAAVEGITQITSRKLIELSGQQLVDCSTD- 157
+P S+DWREKG VT +K QG G+SWAFSAV A+E ++ + KL+ LS Q LVDCST+
Sbjct: 1 LPDSVDWREKGCVTEVKYQGSCGASWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEK 60
Query: 158 --NHGCSGGLMDKAFEYIIENKGLASEADYPYRREQGTCDKQKEKAVAATISKYEDLPQG 215
N GC+GG M AF+YII+NKG+ S+A YPY+ C + K AAT SKY +LP G
Sbjct: 61 YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDLKC-QYDSKYRAATCSKYTELPYG 119
Query: 216 DEQALLQAVS-KQPVSVCVEASGRAFHFYKSG 246
E L +AV+ K PVSV V+A +F Y+SG
Sbjct: 120 REDVLKEAVANKGPVSVGVDARHPSFFLYRSG 151
>pdb|3BCN|A Chain A, Crystal Structure Of A Papain-Like Cysteine Protease
Ervatamin-A Complexed With Irreversible Inhibitor E-64
pdb|3BCN|B Chain B, Crystal Structure Of A Papain-Like Cysteine Protease
Ervatamin-A Complexed With Irreversible Inhibitor E-64
Length = 209
Score = 149 bits (377), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 73/148 (49%), Positives = 94/148 (63%), Gaps = 3/148 (2%)
Query: 99 VPTSIDWREKGAVTHIKDQGQTGSSWAFSAVAAVEGITQITSRKLIELSGQQLVDCSTDN 158
+P +DWR KGAV +K+QG+ GS WAFS V VE I QI + LI LS QQLVDCS N
Sbjct: 1 LPEHVDWRAKGAVIPLKNQGKCGSCWAFSTVTTVESINQIRTGNLISLSEQQLVDCSKKN 60
Query: 159 HGCSGGLMDKAFEYIIENKGLASEADYPYRREQGTCDKQKEKAVAATISKYEDLPQGDEQ 218
HGC GG D+A++YII N G+ +EA+YPY+ QG C K+ I + +PQ +E
Sbjct: 61 HGCKGGYFDRAYQYIIANGGIDTEANYPYKAFQGPCRAAKK---VVRIDGCKGVPQCNEN 117
Query: 219 ALLQAVSKQPVSVCVEASGRAFHFYKSG 246
AL AV+ QP V ++AS + F YK G
Sbjct: 118 ALKNAVASQPSVVAIDASSKQFQHYKGG 145
>pdb|2F1G|A Chain A, Cathepsin S In Complex With Non-Covalent
2-(Benzoxazol-2-Ylamino)- Acetamide
pdb|2F1G|B Chain B, Cathepsin S In Complex With Non-Covalent
2-(Benzoxazol-2-Ylamino)- Acetamide
pdb|2HH5|B Chain B, Crystal Structure Of Cathepsin S In Complex With A Zinc
Mediated Non-Covalent Arylaminoethyl Amide
pdb|2HH5|A Chain A, Crystal Structure Of Cathepsin S In Complex With A Zinc
Mediated Non-Covalent Arylaminoethyl Amide
pdb|2H7J|A Chain A, Crystal Structure Of Cathepsin S In Complex With A
Nonpeptidic Inhibitor.
pdb|2H7J|B Chain B, Crystal Structure Of Cathepsin S In Complex With A
Nonpeptidic Inhibitor.
pdb|2HXZ|A Chain A, Crystal Structure Of Cathepsin S In Complex With A
Nonpeptidic Inhibitor (hexagonal Spacegroup)
pdb|2HXZ|B Chain B, Crystal Structure Of Cathepsin S In Complex With A
Nonpeptidic Inhibitor (hexagonal Spacegroup)
pdb|2HXZ|C Chain C, Crystal Structure Of Cathepsin S In Complex With A
Nonpeptidic Inhibitor (hexagonal Spacegroup)
pdb|2HHN|A Chain A, Cathepsin S In Complex With Non Covalent Arylaminoethyl
Amide.
pdb|2HHN|B Chain B, Cathepsin S In Complex With Non Covalent Arylaminoethyl
Amide.
pdb|2OP3|A Chain A, The Structure Of Cathepsin S With A Novel 2-
Arylphenoxyacetaldehyde Inhibitor Derived By The
Substrate Activity Screening (Sas) Method
pdb|2OP3|B Chain B, The Structure Of Cathepsin S With A Novel 2-
Arylphenoxyacetaldehyde Inhibitor Derived By The
Substrate Activity Screening (Sas) Method
Length = 220
Score = 149 bits (376), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 78/152 (51%), Positives = 101/152 (66%), Gaps = 5/152 (3%)
Query: 99 VPTSIDWREKGAVTHIKDQGQTGSSWAFSAVAAVEGITQITSRKLIELSGQQLVDCSTD- 157
+P S+DWREKG VT +K QG G+ WAFSAV A+E ++ + KL+ LS Q LVDCST+
Sbjct: 4 LPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEK 63
Query: 158 --NHGCSGGLMDKAFEYIIENKGLASEADYPYRREQGTCDKQKEKAVAATISKYEDLPQG 215
N GC+GG M AF+YII+NKG+ S+A YPY+ C + K AAT SKY +LP G
Sbjct: 64 YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQKC-QYDSKYRAATCSKYTELPYG 122
Query: 216 DEQALLQAVS-KQPVSVCVEASGRAFHFYKSG 246
E L +AV+ K PVSV V+A +F Y+SG
Sbjct: 123 REDVLKEAVANKGPVSVGVDARHPSFFLYRSG 154
>pdb|3OVX|A Chain A, Cathepsin S In Complex With A Covalent Inhibitor With An
Aldehyde Warhead
pdb|3OVX|B Chain B, Cathepsin S In Complex With A Covalent Inhibitor With An
Aldehyde Warhead
Length = 218
Score = 149 bits (375), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 78/152 (51%), Positives = 101/152 (66%), Gaps = 5/152 (3%)
Query: 99 VPTSIDWREKGAVTHIKDQGQTGSSWAFSAVAAVEGITQITSRKLIELSGQQLVDCSTD- 157
+P S+DWREKG VT +K QG G+ WAFSAV A+E ++ + KL+ LS Q LVDCST+
Sbjct: 2 LPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEK 61
Query: 158 --NHGCSGGLMDKAFEYIIENKGLASEADYPYRREQGTCDKQKEKAVAATISKYEDLPQG 215
N GC+GG M AF+YII+NKG+ S+A YPY+ C + K AAT SKY +LP G
Sbjct: 62 YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQKC-QYDSKYRAATCSKYTELPYG 120
Query: 216 DEQALLQAVS-KQPVSVCVEASGRAFHFYKSG 246
E L +AV+ K PVSV V+A +F Y+SG
Sbjct: 121 REDVLKEAVANKGPVSVGVDARHPSFFLYRSG 152
>pdb|3N3G|A Chain A, 4-(3-Trifluoromethylphenyl)-Pyrimidine-2-Carbonitrile As
Cathepsin S Inhibitors: N3, Not N1 Is Critically
Important
pdb|3N3G|B Chain B, 4-(3-Trifluoromethylphenyl)-Pyrimidine-2-Carbonitrile As
Cathepsin S Inhibitors: N3, Not N1 Is Critically
Important
pdb|3N4C|A Chain A, 6-Phenyl-1h-Imidazo[4,5-C]pyridine-4-Carbonitrile As
Cathepsin S Inhibitors
pdb|3N4C|B Chain B, 6-Phenyl-1h-Imidazo[4,5-C]pyridine-4-Carbonitrile As
Cathepsin S Inhibitors
Length = 217
Score = 149 bits (375), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 78/152 (51%), Positives = 101/152 (66%), Gaps = 5/152 (3%)
Query: 99 VPTSIDWREKGAVTHIKDQGQTGSSWAFSAVAAVEGITQITSRKLIELSGQQLVDCSTD- 157
+P S+DWREKG VT +K QG G+ WAFSAV A+E ++ + KL+ LS Q LVDCST+
Sbjct: 1 LPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEK 60
Query: 158 --NHGCSGGLMDKAFEYIIENKGLASEADYPYRREQGTCDKQKEKAVAATISKYEDLPQG 215
N GC+GG M AF+YII+NKG+ S+A YPY+ C + K AAT SKY +LP G
Sbjct: 61 YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQKC-QYDSKYRAATCSKYTELPYG 119
Query: 216 DEQALLQAVS-KQPVSVCVEASGRAFHFYKSG 246
E L +AV+ K PVSV V+A +F Y+SG
Sbjct: 120 REDVLKEAVANKGPVSVGVDARHPSFFLYRSG 151
>pdb|1MS6|A Chain A, Dipeptide Nitrile Inhibitor Bound To Cathepsin S.
pdb|2R9M|A Chain A, Cathepsin S Complexed With Compound 15
pdb|2R9M|B Chain B, Cathepsin S Complexed With Compound 15
pdb|2R9N|A Chain A, Cathepsin S Complexed With Compound 26
pdb|2R9N|B Chain B, Cathepsin S Complexed With Compound 26
pdb|2R9O|A Chain A, Cathepsin S Complexed With Compound 8
pdb|2R9O|B Chain B, Cathepsin S Complexed With Compound 8
Length = 222
Score = 149 bits (375), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 78/152 (51%), Positives = 101/152 (66%), Gaps = 5/152 (3%)
Query: 99 VPTSIDWREKGAVTHIKDQGQTGSSWAFSAVAAVEGITQITSRKLIELSGQQLVDCSTD- 157
+P S+DWREKG VT +K QG G+ WAFSAV A+E ++ + KL+ LS Q LVDCST+
Sbjct: 1 LPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEK 60
Query: 158 --NHGCSGGLMDKAFEYIIENKGLASEADYPYRREQGTCDKQKEKAVAATISKYEDLPQG 215
N GC+GG M AF+YII+NKG+ S+A YPY+ C + K AAT SKY +LP G
Sbjct: 61 YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQKC-QYDSKYRAATCSKYTELPYG 119
Query: 216 DEQALLQAVS-KQPVSVCVEASGRAFHFYKSG 246
E L +AV+ K PVSV V+A +F Y+SG
Sbjct: 120 REDVLKEAVANKGPVSVGVDARHPSFFLYRSG 151
>pdb|2FQ9|A Chain A, Cathepsin S With Nitrile Inhibitor
pdb|2FQ9|B Chain B, Cathepsin S With Nitrile Inhibitor
pdb|2FRA|A Chain A, Human Cathepsin S With Cra-27934, A Nitrile Inhibitor
pdb|2FRA|B Chain B, Human Cathepsin S With Cra-27934, A Nitrile Inhibitor
pdb|2FRQ|A Chain A, Human Cathepsin S With Inhibitor Cra-26871
pdb|2FRQ|B Chain B, Human Cathepsin S With Inhibitor Cra-26871
pdb|2FT2|A Chain A, Human Cathepsin S With Inhibitor Cra-29728
pdb|2FT2|B Chain B, Human Cathepsin S With Inhibitor Cra-29728
pdb|2FUD|A Chain A, Human Cathepsin S With Inhibitor Cra-27566
pdb|2FUD|B Chain B, Human Cathepsin S With Inhibitor Cra-27566
pdb|2G7Y|A Chain A, Human Cathepsin S With Inhibitor Cra-16981
pdb|2G7Y|B Chain B, Human Cathepsin S With Inhibitor Cra-16981
Length = 225
Score = 149 bits (375), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 78/152 (51%), Positives = 101/152 (66%), Gaps = 5/152 (3%)
Query: 99 VPTSIDWREKGAVTHIKDQGQTGSSWAFSAVAAVEGITQITSRKLIELSGQQLVDCSTD- 157
+P S+DWREKG VT +K QG G+ WAFSAV A+E ++ + KL+ LS Q LVDCST+
Sbjct: 2 LPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEK 61
Query: 158 --NHGCSGGLMDKAFEYIIENKGLASEADYPYRREQGTCDKQKEKAVAATISKYEDLPQG 215
N GC+GG M AF+YII+NKG+ S+A YPY+ C + K AAT SKY +LP G
Sbjct: 62 YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQKC-QYDSKYRAATCSKYTELPYG 120
Query: 216 DEQALLQAVS-KQPVSVCVEASGRAFHFYKSG 246
E L +AV+ K PVSV V+A +F Y+SG
Sbjct: 121 REDVLKEAVANKGPVSVGVDARHPSFFLYRSG 152
>pdb|1NPZ|A Chain A, Crystal Structures Of Cathepsin S Inhibitor Complexes
pdb|1NPZ|B Chain B, Crystal Structures Of Cathepsin S Inhibitor Complexes
pdb|1NQC|A Chain A, Crystal Structures Of Cathepsin S Inhibitor Complexes
Length = 217
Score = 149 bits (375), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 78/152 (51%), Positives = 101/152 (66%), Gaps = 5/152 (3%)
Query: 99 VPTSIDWREKGAVTHIKDQGQTGSSWAFSAVAAVEGITQITSRKLIELSGQQLVDCSTD- 157
+P S+DWREKG VT +K QG G+ WAFSAV A+E ++ + KL+ LS Q LVDCST+
Sbjct: 1 LPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVTLSAQNLVDCSTEK 60
Query: 158 --NHGCSGGLMDKAFEYIIENKGLASEADYPYRREQGTCDKQKEKAVAATISKYEDLPQG 215
N GC+GG M AF+YII+NKG+ S+A YPY+ C + K AAT SKY +LP G
Sbjct: 61 YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQKC-QYDSKYRAATCSKYTELPYG 119
Query: 216 DEQALLQAVS-KQPVSVCVEASGRAFHFYKSG 246
E L +AV+ K PVSV V+A +F Y+SG
Sbjct: 120 REDVLKEAVANKGPVSVGVDARHPSFFLYRSG 151
>pdb|3HWN|A Chain A, Cathepsin L With Az13010160
pdb|3HWN|B Chain B, Cathepsin L With Az13010160
pdb|3HWN|C Chain C, Cathepsin L With Az13010160
pdb|3HWN|D Chain D, Cathepsin L With Az13010160
Length = 258
Score = 148 bits (373), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 84/193 (43%), Positives = 114/193 (59%), Gaps = 11/193 (5%)
Query: 57 NEFSDLTNEEFRASYTGYNTPVPSLSRQSSLPSNFKYQNVTDVPTSIDWREKGAVTHIKD 116
N F D+T+EEFR G+ P + P + + P S+DWREKG VT +K+
Sbjct: 3 NAFGDMTSEEFRQVMNGFQNRKPRKGKVFQEPLFY------EAPRSVDWREKGYVTPVKN 56
Query: 117 QGQTGSSWAFSAVAAVEGITQITSRKLIELSGQQLVDCS--TDNHGCSGGLMDKAFEYII 174
QGQ GS WAFSA A+EG + +LI LS Q LVDCS N GC+GGLMD AF+Y+
Sbjct: 57 QGQCGSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQGNEGCNGGLMDYAFQYVQ 116
Query: 175 ENKGLASEADYPYRREQGTCDKQKEKAVAATISKYEDLPQGDEQALLQAVSK-QPVSVCV 233
+N GL SE YPY + +C K K A + + D+P+ E+AL++AV+ P+SV +
Sbjct: 117 DNGGLDSEESYPYEATEESC-KYNPKYSVANDAGFVDIPK-QEKALMKAVATVGPISVAI 174
Query: 234 EASGRAFHFYKSG 246
+A +F FYK G
Sbjct: 175 DAGHESFLFYKEG 187
>pdb|2G6D|A Chain A, Human Cathepsin S Mutant With Vinyl Sulfone Inhibitor Cra-
14009
Length = 217
Score = 147 bits (370), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 77/152 (50%), Positives = 100/152 (65%), Gaps = 5/152 (3%)
Query: 99 VPTSIDWREKGAVTHIKDQGQTGSSWAFSAVAAVEGITQITSRKLIELSGQQLVDCSTD- 157
+P S+DWREKG VT +K QG G+ WAFSAV A+E ++ + KL+ LS Q LVDCST+
Sbjct: 1 LPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEK 60
Query: 158 --NHGCSGGLMDKAFEYIIENKGLASEADYPYRREQGTCDKQKEKAVAATISKYEDLPQG 215
N GC+GG M AF+YII+NKG+ S+A YPY+ C + K AAT KY +LP G
Sbjct: 61 YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQKC-QYDSKYRAATCRKYTELPYG 119
Query: 216 DEQALLQAVS-KQPVSVCVEASGRAFHFYKSG 246
E L +AV+ K PVSV V+A +F Y+SG
Sbjct: 120 REDVLKEAVANKGPVSVGVDARHPSFFLYRSG 151
>pdb|1MEG|A Chain A, Crystal Structure Of A Caricain D158e Mutant In Complex
With E-64
Length = 216
Score = 146 bits (368), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 71/148 (47%), Positives = 95/148 (64%), Gaps = 1/148 (0%)
Query: 99 VPTSIDWREKGAVTHIKDQGQTGSSWAFSAVAAVEGITQITSRKLIELSGQQLVDCSTDN 158
+P ++DWR+KGAVT ++ QG GS WAFSAVA VEGI +I + KL+ELS Q+LVDC +
Sbjct: 1 LPENVDWRKKGAVTPVRHQGSCGSCWAFSAVATVEGINKIRTGKLVELSEQELVDCERRS 60
Query: 159 HGCSGGLMDKAFEYIIENKGLASEADYPYRREQGTCDKQKEKAVAATISKYEDLPQGDEQ 218
HGC GG A EY+ +N G+ + YPY+ +QGTC ++ S + +E
Sbjct: 61 HGCKGGYPPYALEYVAKN-GIHLRSKYPYKAKQGTCRAKQVGGPIVKTSGVGRVQPNNEG 119
Query: 219 ALLQAVSKQPVSVCVEASGRAFHFYKSG 246
LL A++KQPVSV VE+ GR F YK G
Sbjct: 120 NLLNAIAKQPVSVVVESKGRPFQLYKGG 147
>pdb|1PPO|A Chain A, Determination Of The Structure Of Papaya Protease Omega
Length = 216
Score = 146 bits (368), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 71/148 (47%), Positives = 95/148 (64%), Gaps = 1/148 (0%)
Query: 99 VPTSIDWREKGAVTHIKDQGQTGSSWAFSAVAAVEGITQITSRKLIELSGQQLVDCSTDN 158
+P ++DWR+KGAVT ++ QG GS WAFSAVA VEGI +I + KL+ELS Q+LVDC +
Sbjct: 1 LPENVDWRKKGAVTPVRHQGSCGSCWAFSAVATVEGINKIRTGKLVELSEQELVDCERRS 60
Query: 159 HGCSGGLMDKAFEYIIENKGLASEADYPYRREQGTCDKQKEKAVAATISKYEDLPQGDEQ 218
HGC GG A EY+ +N G+ + YPY+ +QGTC ++ S + +E
Sbjct: 61 HGCKGGYPPYALEYVAKN-GIHLRSKYPYKAKQGTCRAKQVGGPIVKTSGVGRVQPNNEG 119
Query: 219 ALLQAVSKQPVSVCVEASGRAFHFYKSG 246
LL A++KQPVSV VE+ GR F YK G
Sbjct: 120 NLLNAIAKQPVSVVVESKGRPFQLYKGG 147
>pdb|3U8E|A Chain A, Crystal Structure Of Cysteine Protease From Bulbs Of
Crocus Sativus At 1.3 A Resolution
Length = 222
Score = 145 bits (367), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 73/144 (50%), Positives = 91/144 (63%), Gaps = 3/144 (2%)
Query: 100 PTSIDWREKGAVTHIKDQGQTGSSWAFSAVAAVEGITQITSRKLIELSGQQLVDCSTDNH 159
P SIDWR+KGAVT +KDQG G WAF A A+EGI IT+ +LI +S QQ+VDC T
Sbjct: 2 PASIDWRKKGAVTSVKDQGACGMCWAFGATGAIEGIDAITTGRLISVSEQQIVDCDTXXX 61
Query: 160 GCSGGLMDKAFEYIIENKGLASEADYPYRREQGTCDKQKEKAVAATISKYEDLPQGDEQA 219
GG D AF ++I N G+AS+A+YPY GTCD K +AA I Y ++P A
Sbjct: 62 XXXGGDADDAFRWVITNGGIASDANYPYTGVDGTCDLNKP--IAARIDGYTNVPN-SSSA 118
Query: 220 LLQAVSKQPVSVCVEASGRAFHFY 243
LL AV+KQPVSV + S +F Y
Sbjct: 119 LLDAVAKQPVSVNIYTSSTSFQLY 142
>pdb|2ACT|A Chain A, Crystallographic Refinement Of The Structure Of Actinidin
At 1.7 Angstroms Resolution By Fast Fourier
Least-Squares Methods
Length = 220
Score = 145 bits (367), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 70/150 (46%), Positives = 96/150 (64%), Gaps = 2/150 (1%)
Query: 99 VPTSIDWREKGAVTHIKDQGQTGSSWAFSAVAAVEGITQITSRKLIELSGQQLVDC--ST 156
+P+ +DWR GAV IK QG+ G WAFSA+A VEGI +ITS LI LS Q+L+DC +
Sbjct: 1 LPSYVDWRSAGAVVDIKSQGECGGXWAFSAIATVEGINKITSGSLISLSEQELIDCGRTQ 60
Query: 157 DNHGCSGGLMDKAFEYIIENKGLASEADYPYRREQGTCDKQKEKAVAATISKYEDLPQGD 216
+ GC GG + F++II + G+ +E +YPY + G CD + TI YE++P +
Sbjct: 61 NTRGCDGGYITDGFQFIINDGGINTEENYPYTAQDGDCDVALQDQKYVTIDTYENVPYNN 120
Query: 217 EQALLQAVSKQPVSVCVEASGRAFHFYKSG 246
E AL AV+ QPVSV ++A+G AF Y SG
Sbjct: 121 EWALQTAVTYQPVSVALDAAGDAFKQYASG 150
>pdb|2FYE|A Chain A, Mutant Human Cathepsin S With Irreversible Inhibitor Cra-
14013
Length = 217
Score = 145 bits (365), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 78/153 (50%), Positives = 100/153 (65%), Gaps = 7/153 (4%)
Query: 99 VPTSIDWREKGAVTHIKDQGQTGSSWAFSAVAAVEGITQITSRKLIELSGQQLVDCST-- 156
+P S+DWREKG VT +K QG G+ WAFSAV A+E ++ + KL+ LS Q LVDCST
Sbjct: 1 LPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTKK 60
Query: 157 -DNHGCSGGLMDKAFEYIIENKGLASEADYPYRREQGTCDKQKEKAV-AATISKYEDLPQ 214
N GC+GG M AF+YII+NKG+ S+A YPY+ C Q + A AAT KY +LP
Sbjct: 61 YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQKC--QYDSAYRAATCRKYTELPY 118
Query: 215 GDEQALLQAVS-KQPVSVCVEASGRAFHFYKSG 246
G E L +AV+ K PVSV V+A +F Y+SG
Sbjct: 119 GREDVLKEAVANKGPVSVGVDARHPSFFLYRSG 151
>pdb|1AEC|A Chain A, Crystal Structure Of Actinidin-E-64 Complex+
Length = 218
Score = 144 bits (364), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 73/152 (48%), Positives = 99/152 (65%), Gaps = 6/152 (3%)
Query: 99 VPTSIDWREKGAVTHIKDQGQTGSSWAFSAVAAVEGITQITSRKLIELSGQQLVDC--ST 156
+P+ +DWR GAV IK QG+ G WAFSA+A VEGI +I + LI LS Q+L+DC +
Sbjct: 1 LPSYVDWRSAGAVVDIKSQGECGGCWAFSAIATVEGINKIVTGVLISLSEQELIDCGRTQ 60
Query: 157 DNHGCSGGLMDKAFEYIIENKGLASEADYPYRREQGTC--DKQKEKAVAATISKYEDLPQ 214
+ GC+GG + F++II N G+ +E +YPY + G C D Q EK V TI YE++P
Sbjct: 61 NTRGCNGGYITDGFQFIINNGGINTEENYPYTAQDGECNVDLQNEKYV--TIDTYENVPY 118
Query: 215 GDEQALLQAVSKQPVSVCVEASGRAFHFYKSG 246
+E AL AV+ QPVSV ++A+G AF Y SG
Sbjct: 119 NNEWALQTAVTYQPVSVALDAAGDAFKQYSSG 150
>pdb|3QT4|A Chain A, Structure Of Digestive Procathepsin L 3 Of Tenebrio
Molitor Larval Midgut
Length = 329
Score = 144 bits (362), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 94/249 (37%), Positives = 129/249 (51%), Gaps = 22/249 (8%)
Query: 10 HEQWM---AQHGRTYKDELEKAMRLNIFKQNLEYIGKAN---KEGNRTYKLGTNEFSDLT 63
EQW H ++Y +E+ R IFK N+ I + N ++G TY N+F D++
Sbjct: 24 QEQWSQFKLTHKKSYSSPIEEIRRQLIFKDNVAKIAEHNAKFEKGEVTYSKAMNQFGDMS 83
Query: 64 NEEFRASYTGYNTPVPSLSRQSSLPSNFKYQNVTD---VPTSIDWREKGAVTHIKDQGQT 120
EEF A P P N + V+ + S+DWR AV+ +KDQGQ
Sbjct: 84 KEEFLAYVNRGKAQKPKH------PENLRMPYVSSKKPLAASVDWRSN-AVSEVKDQGQC 136
Query: 121 GSSWAFSAVAAVEGITQITSRKLIELSGQQLVDCSTD--NHGCSGGLMDKAFEYIIENKG 178
GSSW+FS AVEG + +L LS Q L+DCS+ N GC GG MD AF Y I + G
Sbjct: 137 GSSWSFSTTGAVEGQLALQRGRLTSLSEQNLIDCSSSYGNAGCDGGWMDSAFSY-IHDYG 195
Query: 179 LASEADYPYRREQGTCDKQKEKAVAATISKYEDLPQGDEQALLQAVSKQ-PVSVCVEASG 237
+ SE+ YPY + C ++V T+S Y DLP GDE +L AV + PV+V ++A+
Sbjct: 196 IMSESAYPYEAQGDYCRFDSSQSV-TTLSGYYDLPSGDENSLADAVGQAGPVAVAIDATD 254
Query: 238 RAFHFYKSG 246
FY G
Sbjct: 255 E-LQFYSGG 262
>pdb|1O0E|A Chain A, 1.9 Angstrom Crystal Structure Of A Plant Cysteine
Protease Ervatamin C
pdb|1O0E|B Chain B, 1.9 Angstrom Crystal Structure Of A Plant Cysteine
Protease Ervatamin C
Length = 208
Score = 142 bits (358), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 71/148 (47%), Positives = 93/148 (62%), Gaps = 3/148 (2%)
Query: 99 VPTSIDWREKGAVTHIKDQGQTGSSWAFSAVAAVEGITQITSRKLIELSGQQLVDCSTDN 158
+P IDWR+KGAVT +K+QG GS WAFS V+ VE I QI + LI LS Q+LVDC N
Sbjct: 1 LPEQIDWRKKGAVTPVKNQGSCGSCWAFSTVSTVESINQIRTGNLISLSEQELVDCDKKN 60
Query: 159 HGCSGGLMDKAFEYIIENKGLASEADYPYRREQGTCDKQKEKAVAATISKYEDLPQGDEQ 218
HGC GG A++YII N G+ ++A+YPY+ QG C + +I Y +P +E
Sbjct: 61 HGCLGGAFVFAYQYIINNGGIDTQANYPYKAVQGPCQAASK---VVSIDGYNGVPFCNEX 117
Query: 219 ALLQAVSKQPVSVCVEASGRAFHFYKSG 246
AL QAV+ QP +V ++AS F Y SG
Sbjct: 118 ALKQAVAVQPSTVAIDASSAQFQQYSSG 145
>pdb|3QJ3|A Chain A, Structure Of Digestive Procathepsin L2 Proteinase From
Tenebrio Molitor Larval Midgut
pdb|3QJ3|B Chain B, Structure Of Digestive Procathepsin L2 Proteinase From
Tenebrio Molitor Larval Midgut
Length = 331
Score = 139 bits (350), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 88/244 (36%), Positives = 130/244 (53%), Gaps = 21/244 (8%)
Query: 6 IVAKHEQWMAQHGRTYKDELEKAMRLNIFKQNLEYIGKAN---KEGNRTYKLGTNEFSDL 62
+ K E + + R+Y + E+ R IF++ LE + N ++G +Y LG N F+D+
Sbjct: 18 VAEKWENFKTTYARSYVNAKEETFRKQIFQKKLETFEEHNEKYRQGLVSYTLGVNLFTDM 77
Query: 63 TNEEFRASYTGYNTP-------VPSLSRQS-SLPSNFKYQNVTDVPTSIDWREKGAVTHI 114
T EE +A G P +P +R+ L ++ +Y P S DWR++G V+ +
Sbjct: 78 TPEEMKAYTHGLIMPADLHKNGIPIKTREDLGLNASVRY------PASFDWRDQGMVSPV 131
Query: 115 KDQGQTGSSWAFSAVAAVEGITQITSRKLIE--LSGQQLVDCSTDNHGCSGGLMDKAFEY 172
K+QG GSSWAFS+ A+E +I + + +S QQLVDC + GCSGG M+ AF Y
Sbjct: 132 KNQGSCGSSWAFSSTGAIESQMKIANGAGYDSSVSEQQLVDCVPNALGCSGGWMNDAFTY 191
Query: 173 IIENKGLASEADYPYRREQGTCDKQKEKAVAATISKYEDLPQGDEQALLQAV-SKQPVSV 231
+ +N G+ SE YPY G C + VAA +S Y L DE L V +K PV+V
Sbjct: 192 VAQNGGIDSEGAYPYEMADGNCHYDPNQ-VAARLSGYVYLSGPDENMLADMVATKGPVAV 250
Query: 232 CVEA 235
+A
Sbjct: 251 AFDA 254
>pdb|2O6X|A Chain A, Crystal Structure Of Procathepsin L1 From Fasciola
Hepatica
Length = 310
Score = 139 bits (350), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 92/243 (37%), Positives = 132/243 (54%), Gaps = 18/243 (7%)
Query: 12 QWMAQHGRTYKDELEKAMRLNIFKQNLEYIGKANKE---GNRTYKLGTNEFSDLTNEEFR 68
QW + + Y + + R NI+++N+++I + N G TY LG N+F+D+T EEF+
Sbjct: 7 QWKRMYNKEY-NGADDQHRRNIWEKNVKHIQEHNLRHDLGLVTYTLGLNQFTDMTFEEFK 65
Query: 69 ASYTGYNTPVPSLSRQSSLPSN-FKYQ-NVTDVPTSIDWREKGAVTHIKDQGQTGSSWAF 126
A Y + +SR S + S+ Y+ N VP IDWRE G VT +KDQG GS WAF
Sbjct: 66 AKY------LTEMSRASDILSHGVPYEANNRAVPDKIDWRESGYVTEVKDQGNCGSGWAF 119
Query: 127 SAVAAVEGITQITSRKLIELSGQQLVDCST--DNHGCSGGLMDKAFEYIIENKGLASEAD 184
S +EG R I S QQLVDCS N+GC GGLM+ A++Y ++ GL +E+
Sbjct: 120 STTGTMEGQYMKNERTSISFSEQQLVDCSRPWGNNGCGGGLMENAYQY-LKQFGLETESS 178
Query: 185 YPYRREQGTCDKQKEKAVAATISKYEDLPQGDEQALLQAVSKQ-PVSVCVEASGRAFHFY 243
YPY +G C K+ VA ++ + + G E L V + P +V V+ F Y
Sbjct: 179 YPYTAVEGQCRYNKQLGVAK-VTGFYTVHSGSEVELKNLVGAEGPAAVAVDVE-SDFMMY 236
Query: 244 KSG 246
+SG
Sbjct: 237 RSG 239
>pdb|1YAL|A Chain A, Carica Papaya Chymopapain At 1.7 Angstroms Resolution
Length = 218
Score = 138 bits (348), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 66/147 (44%), Positives = 91/147 (61%), Gaps = 1/147 (0%)
Query: 100 PTSIDWREKGAVTHIKDQGQTGSSWAFSAVAAVEGITQITSRKLIELSGQQLVDCSTDNH 159
P SIDWR KGAVT +K+QG GS WAFS +A VEGI +I + L+ELS Q+LVDC ++
Sbjct: 2 PQSIDWRAKGAVTPVKNQGACGSXWAFSTIATVEGINKIVTGNLLELSEQELVDCDKHSY 61
Query: 160 GCSGGLMDKAFEYIIENKGLASEADYPYRREQGTCDKQKEKAVAATISKYEDLPQGDEQA 219
GC GG + +Y + N G+ + YPY+ +Q C + I+ Y+ +P E +
Sbjct: 62 GCKGGYQTTSLQY-VANNGVHTSKVYPYQAKQYKCRATDKPGPKVKITGYKRVPSNXETS 120
Query: 220 LLQAVSKQPVSVCVEASGRAFHFYKSG 246
L A++ QP+SV VEA G+ F YKSG
Sbjct: 121 FLGALANQPLSVLVEAGGKPFQLYKSG 147
>pdb|3H7D|A Chain A, The Crystal Structure Of The Cathepsin K Variant M5 In
Compl Chondroitin-4-Sulfate
pdb|3H7D|E Chain E, The Crystal Structure Of The Cathepsin K Variant M5 In
Compl Chondroitin-4-Sulfate
Length = 215
Score = 138 bits (348), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 69/148 (46%), Positives = 99/148 (66%), Gaps = 2/148 (1%)
Query: 100 PTSIDWREKGAVTHIKDQGQTGSSWAFSAVAAVEGITQITSRKLIELSGQQLVDCSTDNH 159
P S+D+REKG VT +K+QGQ GS WAFS+V A+EG + + KL+ LS Q LVDC ++N
Sbjct: 2 PDSVDYREKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVSEND 61
Query: 160 GCSGGLMDKAFEYIIENKGLASEADYPYRREQGTCDKQKEKAVAATISKYEDLPQGDEQA 219
GC GG M AF+Y+ +N+G+ SE YPY ++ +C AA Y ++P+G+E+A
Sbjct: 62 GCGGGYMTNAFQYVQKNRGIDSEDAYPYVGQEESC-MYNPTGKAAKCRGYREIPEGNEKA 120
Query: 220 LLQAVSK-QPVSVCVEASGRAFHFYKSG 246
L +AV++ PVSV ++AS +F FY G
Sbjct: 121 LKRAVARVGPVSVAIDASLTSFQFYSKG 148
>pdb|1SNK|A Chain A, Cathepsin K Complexed With Carbamate Derivatized
Norleucine Aldehyde
Length = 214
Score = 137 bits (344), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 68/148 (45%), Positives = 99/148 (66%), Gaps = 2/148 (1%)
Query: 100 PTSIDWREKGAVTHIKDQGQTGSSWAFSAVAAVEGITQITSRKLIELSGQQLVDCSTDNH 159
P S+D+R+KG VT +K+QGQ GS WAFS+V A+EG + + KL+ LS Q LVDC ++N
Sbjct: 1 PDSVDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVSEND 60
Query: 160 GCSGGLMDKAFEYIIENKGLASEADYPYRREQGTCDKQKEKAVAATISKYEDLPQGDEQA 219
GC GG M AF+Y+ +N+G+ SE YPY ++ +C AA Y ++P+G+E+A
Sbjct: 61 GCGGGYMTNAFQYVQKNRGIDSEDAYPYVGQEESC-MYNPTGKAAKCRGYREIPEGNEKA 119
Query: 220 LLQAVSK-QPVSVCVEASGRAFHFYKSG 246
L +AV++ PVSV ++AS +F FY G
Sbjct: 120 LKRAVARVGPVSVAIDASLTSFQFYSKG 147
>pdb|1MEM|A Chain A, Crystal Structure Of Cathepsin K Complexed With A Potent
Vinyl Sulfone Inhibitor
pdb|1NL6|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Azepanone Inhibitor
pdb|1NL6|B Chain B, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Azepanone Inhibitor
pdb|1NLJ|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Azepanone Inhibitor
pdb|1NLJ|B Chain B, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Azepanone Inhibitor
pdb|1Q6K|A Chain A, Cathepsin K Complexed With T-butyl(1s)-1-cyclohexyl-2-
Oxoethylcarbamate
pdb|1TU6|A Chain A, Cathepsin K Complexed With A Ketoamide Inhibitor
pdb|1TU6|B Chain B, Cathepsin K Complexed With A Ketoamide Inhibitor
pdb|1YK7|A Chain A, Cathepsin K Complexed With A Cyanopyrrolidine Inhibitor
pdb|1YK8|A Chain A, Cathepsin K Complexed With A Cyanamide-Based Inhibitor
pdb|1YT7|A Chain A, Cathepsin K Complexed With A Constrained Ketoamide
Inhibitor
pdb|2BDL|A Chain A, Cathepsin K Complexed With A Pyrrolidine Ketoamide-Based
Inhibitor
pdb|2ATO|A Chain A, Crystal Structure Of Human Cathepsin K In Complex With
Myocrisin
pdb|2AUX|A Chain A, Cathepsin K Complexed With A Semicarbazone Inhibitor
pdb|2AUZ|A Chain A, Cathepsin K Complexed With A Semicarbazone Inhibitor
pdb|2FTD|A Chain A, Crystal Structure Of Cathepsin K Complexed With 7-Methyl-
Substituted Azepan-3-One Compound
pdb|2FTD|B Chain B, Crystal Structure Of Cathepsin K Complexed With 7-Methyl-
Substituted Azepan-3-One Compound
pdb|1ATK|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With The Covalent Inhibitor E-64
pdb|1AU0|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Symmetric Diacylaminomethyl
Ketone Inhibitor
pdb|1AU2|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Propanone Inhibitor
pdb|1AU3|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Pyrrolidinone Inhibitor
pdb|1AU4|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Pyrrolidinone Inhibitor
pdb|1AYU|A Chain A, Crystal Structure Of Cysteine Protease Human Cathepsin K
In Complex With A Covalent Symmetric Biscarbohydrazide
Inhibitor
pdb|1AYV|A Chain A, Crystal Structure Of Cysteine Protease Human Cathepsin K
In Complex With A Covalent Thiazolhydrazide Inhibitor
pdb|1AYW|A Chain A, Crystal Structure Of Cysteine Protease Human Cathepsin K
In Complex With A Covalent
Benzyloxybenzoylcarbohydrazide Inhibitor
pdb|1BGO|A Chain A, Crystal Structure Of Cysteine Protease Human Cathepsin K
In Complex With A Covalent Peptidomimetic Inhibitor
pdb|3C9E|A Chain A, Crystal Structure Of The Cathepsin K : Chondroitin Sulfate
Complex.
pdb|3KW9|A Chain A, X-Ray Structure Of Cathepsin K Covalently Bound To A
Triazine Ligand
pdb|3KWZ|A Chain A, Cathepsin K In Complex With A Non-Selective 2-Cyano-
Pyrimidine Inhibitor
pdb|3KX1|A Chain A, Cathepsin K In Complex With A Selective 2-Cyano-Pyrimidine
Inhibitor
pdb|3KWB|X Chain X, Structure Of Catk Covalently Bound To A Dioxo-Triazine
Inhibitor
pdb|3KWB|Y Chain Y, Structure Of Catk Covalently Bound To A Dioxo-Triazine
Inhibitor
pdb|3O1G|A Chain A, Cathepsin K Covalently Bound To A 2-Cyano Pyrimidine
Inhibitor With A Benzyl P3 Group.
pdb|3O0U|A Chain A, Cathepsin K Covalently Bound To A Cyano-Pyrimidine
Inhibitor With Improved Selectivity Over Herg
pdb|4DMX|A Chain A, Cathepsin K Inhibitor
pdb|4DMY|A Chain A, Cathepsin K Inhibitor
pdb|4DMY|B Chain B, Cathepsin K Inhibitor
Length = 215
Score = 137 bits (344), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 68/148 (45%), Positives = 99/148 (66%), Gaps = 2/148 (1%)
Query: 100 PTSIDWREKGAVTHIKDQGQTGSSWAFSAVAAVEGITQITSRKLIELSGQQLVDCSTDNH 159
P S+D+R+KG VT +K+QGQ GS WAFS+V A+EG + + KL+ LS Q LVDC ++N
Sbjct: 2 PDSVDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVSEND 61
Query: 160 GCSGGLMDKAFEYIIENKGLASEADYPYRREQGTCDKQKEKAVAATISKYEDLPQGDEQA 219
GC GG M AF+Y+ +N+G+ SE YPY ++ +C AA Y ++P+G+E+A
Sbjct: 62 GCGGGYMTNAFQYVQKNRGIDSEDAYPYVGQEESC-MYNPTGKAAKCRGYREIPEGNEKA 120
Query: 220 LLQAVSK-QPVSVCVEASGRAFHFYKSG 246
L +AV++ PVSV ++AS +F FY G
Sbjct: 121 LKRAVARVGPVSVAIDASLTSFQFYSKG 148
>pdb|1U9V|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With The Covalent Inhibitor Nvp-Abe854
pdb|1U9W|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With The Covalent Inhibitor Nvp-Abi491
pdb|1U9X|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With The Covalent Inhibitor Nvp-Abj688
pdb|2R6N|A Chain A, Crystal Structure Of A Pyrrolopyrimidine Inhibitor In
Complex With Human Cathepsin K
Length = 217
Score = 136 bits (343), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 68/148 (45%), Positives = 99/148 (66%), Gaps = 2/148 (1%)
Query: 100 PTSIDWREKGAVTHIKDQGQTGSSWAFSAVAAVEGITQITSRKLIELSGQQLVDCSTDNH 159
P S+D+R+KG VT +K+QGQ GS WAFS+V A+EG + + KL+ LS Q LVDC ++N
Sbjct: 4 PDSVDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVSEND 63
Query: 160 GCSGGLMDKAFEYIIENKGLASEADYPYRREQGTCDKQKEKAVAATISKYEDLPQGDEQA 219
GC GG M AF+Y+ +N+G+ SE YPY ++ +C AA Y ++P+G+E+A
Sbjct: 64 GCGGGYMTNAFQYVQKNRGIDSEDAYPYVGQEESC-MYNPTGKAAKCRGYREIPEGNEKA 122
Query: 220 LLQAVSK-QPVSVCVEASGRAFHFYKSG 246
L +AV++ PVSV ++AS +F FY G
Sbjct: 123 LKRAVARVGPVSVAIDASLTSFQFYSKG 150
>pdb|2F7D|A Chain A, A Mutant Rabbit Cathepsin K With A Nitrile Inhibitor
Length = 215
Score = 136 bits (342), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 69/148 (46%), Positives = 97/148 (65%), Gaps = 2/148 (1%)
Query: 100 PTSIDWREKGAVTHIKDQGQTGSSWAFSAVAAVEGITQITSRKLIELSGQQLVDCSTDNH 159
P SID+R+KG VT +K+QGQ GS WAFS+V A+EG + + KL+ LS Q LVDC ++N
Sbjct: 2 PDSIDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVSEND 61
Query: 160 GCSGGLMDKAFEYIIENKGLASEADYPYRREQGTCDKQKEKAVAATISKYEDLPQGDEQA 219
GC GG M AF+Y+ N+G+ SE YPY + +C AA Y ++P+G+E+A
Sbjct: 62 GCGGGYMTNAFQYVQRNRGIDSEDAYPYVGQDESC-MYNPTGKAAKCRGYREIPEGNEKA 120
Query: 220 LLQAVSK-QPVSVCVEASGRAFHFYKSG 246
L +AV++ PVSV ++AS +F FY G
Sbjct: 121 LKRAVARVGPVSVAIDASLTSFQFYSKG 148
>pdb|2NQD|B Chain B, Crystal Structure Of Cysteine Protease Inhibitor,
Chagasin, In Complex With Human Cathepsin L
Length = 221
Score = 135 bits (341), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 73/152 (48%), Positives = 99/152 (65%), Gaps = 5/152 (3%)
Query: 98 DVPTSIDWREKGAVTHIKDQGQTGSSWAFSAVAAVEGITQITSRKLIELSGQQLVDCS-- 155
+ P S+DWREKG VT +K+QGQ GS+WAFSA A+EG + +LI LS Q LVDCS
Sbjct: 1 EAPRSVDWREKGYVTPVKNQGQCGSAWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGP 60
Query: 156 TDNHGCSGGLMDKAFEYIIENKGLASEADYPYRREQGTCDKQKEKAVAATISKYEDLPQG 215
N GC+GGLMD AF+Y+ +N GL SE YPY + +C K K A + + D+P+
Sbjct: 61 QGNEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEESC-KYNPKYSVANDTGFVDIPK- 118
Query: 216 DEQALLQAVSK-QPVSVCVEASGRAFHFYKSG 246
E+AL++AV+ P+SV ++A +F FYK G
Sbjct: 119 QEKALMKAVATVGPISVAIDAGHESFLFYKEG 150
>pdb|3IV2|A Chain A, Crystal Structure Of Mature Apo-Cathepsin L C25a Mutant
pdb|3IV2|B Chain B, Crystal Structure Of Mature Apo-Cathepsin L C25a Mutant
pdb|3K24|A Chain A, Crystal Structure Of Mature Apo-Cathepsin L C25a Mutant In
Complex With Gln-Leu-Ala Peptide
pdb|3K24|B Chain B, Crystal Structure Of Mature Apo-Cathepsin L C25a Mutant In
Complex With Gln-Leu-Ala Peptide
Length = 220
Score = 135 bits (339), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 73/150 (48%), Positives = 98/150 (65%), Gaps = 5/150 (3%)
Query: 100 PTSIDWREKGAVTHIKDQGQTGSSWAFSAVAAVEGITQITSRKLIELSGQQLVDCS--TD 157
P S+DWREKG VT +K+QGQ GS+WAFSA A+EG + +LI LS Q LVDCS
Sbjct: 2 PRSVDWREKGYVTPVKNQGQCGSAWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQG 61
Query: 158 NHGCSGGLMDKAFEYIIENKGLASEADYPYRREQGTCDKQKEKAVAATISKYEDLPQGDE 217
N GC+GGLMD AF+Y+ +N GL SE YPY + +C K K A + + D+P+ E
Sbjct: 62 NEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEESC-KYNPKYSVANDTGFVDIPK-QE 119
Query: 218 QALLQAVSK-QPVSVCVEASGRAFHFYKSG 246
+AL++AV+ P+SV ++A +F FYK G
Sbjct: 120 KALMKAVATVGPISVAIDAGHESFLFYKEG 149
>pdb|3OF8|A Chain A, Structural Basis For Reversible And Irreversible
Inhibition Of Human Cathepsin L By Their Respective
Dipeptidyl Glyoxal And Diazomethylketone Inhibitors
pdb|3OF9|A Chain A, Structural Basis For Irreversible Inhibition Of Human
Cathepsin L By A Diazomethylketone Inhibitor
Length = 221
Score = 135 bits (339), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 73/152 (48%), Positives = 98/152 (64%), Gaps = 5/152 (3%)
Query: 98 DVPTSIDWREKGAVTHIKDQGQTGSSWAFSAVAAVEGITQITSRKLIELSGQQLVDCS-- 155
+ P S+DWREKG VT +K+QGQ GS WAFSA A+EG + +LI LS Q LVDCS
Sbjct: 1 EAPRSVDWREKGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGP 60
Query: 156 TDNHGCSGGLMDKAFEYIIENKGLASEADYPYRREQGTCDKQKEKAVAATISKYEDLPQG 215
N GC+GGLMD AF+Y+ +N GL SE YPY + +C K K A + + D+P+
Sbjct: 61 QGNEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEESC-KYNPKYSVANDTGFVDIPK- 118
Query: 216 DEQALLQAVSK-QPVSVCVEASGRAFHFYKSG 246
E+AL++AV+ P+SV ++A +F FYK G
Sbjct: 119 QEKALMKAVATVGPISVAIDAGHESFLFYKEG 150
>pdb|3BC3|A Chain A, Exploring Inhibitor Binding At The S Subsites Of Cathepsin
L
pdb|3BC3|B Chain B, Exploring Inhibitor Binding At The S Subsites Of Cathepsin
L
pdb|3H8C|A Chain A, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors (Compound 14)
pdb|3H8C|B Chain B, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors (Compound 14)
Length = 220
Score = 134 bits (338), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 73/150 (48%), Positives = 97/150 (64%), Gaps = 5/150 (3%)
Query: 100 PTSIDWREKGAVTHIKDQGQTGSSWAFSAVAAVEGITQITSRKLIELSGQQLVDCS--TD 157
P S+DWREKG VT +K+QGQ GS WAFSA A+EG + +LI LS Q LVDCS
Sbjct: 2 PRSVDWREKGYVTPVKNQGQCGSXWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQG 61
Query: 158 NHGCSGGLMDKAFEYIIENKGLASEADYPYRREQGTCDKQKEKAVAATISKYEDLPQGDE 217
N GC+GGLMD AF+Y+ +N GL SE YPY + +C K K A + + D+P+ E
Sbjct: 62 NEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEESC-KYNPKYSVANDTGFVDIPK-QE 119
Query: 218 QALLQAVSK-QPVSVCVEASGRAFHFYKSG 246
+AL++AV+ P+SV ++A +F FYK G
Sbjct: 120 KALMKAVATVGPISVAIDAGHESFLFYKEG 149
>pdb|1MHW|A Chain A, Design Of Non-covalent Inhibitors Of Human Cathepsin L.
From The 96- Residue Proregion To Optimized Tripeptides
pdb|1MHW|B Chain B, Design Of Non-covalent Inhibitors Of Human Cathepsin L.
From The 96- Residue Proregion To Optimized Tripeptides
Length = 175
Score = 134 bits (338), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 73/150 (48%), Positives = 97/150 (64%), Gaps = 5/150 (3%)
Query: 100 PTSIDWREKGAVTHIKDQGQTGSSWAFSAVAAVEGITQITSRKLIELSGQQLVDCS--TD 157
P S+DWREKG VT +K+QGQ GS WAFSA A+EG + +LI LS Q LVDCS
Sbjct: 2 PRSVDWREKGYVTPVKNQGQCGSXWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQG 61
Query: 158 NHGCSGGLMDKAFEYIIENKGLASEADYPYRREQGTCDKQKEKAVAATISKYEDLPQGDE 217
N GC+GGLMD AF+Y+ +N GL SE YPY + +C K K A + + D+P+ E
Sbjct: 62 NEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEESC-KYNPKYSVANDTGFVDIPK-QE 119
Query: 218 QALLQAVSK-QPVSVCVEASGRAFHFYKSG 246
+AL++AV+ P+SV ++A +F FYK G
Sbjct: 120 KALMKAVATVGPISVAIDAGHESFLFYKEG 149
>pdb|3H89|A Chain A, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H89|B Chain B, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H89|C Chain C, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H89|D Chain D, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H89|E Chain E, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H89|F Chain F, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H8B|A Chain A, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|3H8B|B Chain B, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|3H8B|C Chain C, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|3H8B|D Chain D, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|3H8B|E Chain E, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|3H8B|F Chain F, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|2XU3|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2XU4|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2XU5|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2YJ2|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2YJ8|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2YJ9|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2YJB|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2YJC|A Chain A, Cathepsin L With A Nitrile Inhibitor
Length = 220
Score = 134 bits (338), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 73/150 (48%), Positives = 97/150 (64%), Gaps = 5/150 (3%)
Query: 100 PTSIDWREKGAVTHIKDQGQTGSSWAFSAVAAVEGITQITSRKLIELSGQQLVDCS--TD 157
P S+DWREKG VT +K+QGQ GS WAFSA A+EG + +LI LS Q LVDCS
Sbjct: 2 PRSVDWREKGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQG 61
Query: 158 NHGCSGGLMDKAFEYIIENKGLASEADYPYRREQGTCDKQKEKAVAATISKYEDLPQGDE 217
N GC+GGLMD AF+Y+ +N GL SE YPY + +C K K A + + D+P+ E
Sbjct: 62 NEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEESC-KYNPKYSVANDTGFVDIPK-QE 119
Query: 218 QALLQAVSK-QPVSVCVEASGRAFHFYKSG 246
+AL++AV+ P+SV ++A +F FYK G
Sbjct: 120 KALMKAVATVGPISVAIDAGHESFLFYKEG 149
>pdb|3HHA|A Chain A, Crystal Structure Of Cathepsin L In Complex With
Az12878478
pdb|3HHA|B Chain B, Crystal Structure Of Cathepsin L In Complex With
Az12878478
pdb|3HHA|C Chain C, Crystal Structure Of Cathepsin L In Complex With
Az12878478
pdb|3HHA|D Chain D, Crystal Structure Of Cathepsin L In Complex With
Az12878478
pdb|2XU1|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2XU1|B Chain B, Cathepsin L With A Nitrile Inhibitor
pdb|2XU1|C Chain C, Cathepsin L With A Nitrile Inhibitor
pdb|2XU1|D Chain D, Cathepsin L With A Nitrile Inhibitor
Length = 220
Score = 134 bits (338), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 73/150 (48%), Positives = 97/150 (64%), Gaps = 5/150 (3%)
Query: 100 PTSIDWREKGAVTHIKDQGQTGSSWAFSAVAAVEGITQITSRKLIELSGQQLVDCS--TD 157
P S+DWREKG VT +K+QGQ GS WAFSA A+EG + +LI LS Q LVDCS
Sbjct: 2 PRSVDWREKGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQG 61
Query: 158 NHGCSGGLMDKAFEYIIENKGLASEADYPYRREQGTCDKQKEKAVAATISKYEDLPQGDE 217
N GC+GGLMD AF+Y+ +N GL SE YPY + +C K K A + + D+P+ E
Sbjct: 62 NEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEESC-KYNPKYSVANDAGFVDIPK-QE 119
Query: 218 QALLQAVSK-QPVSVCVEASGRAFHFYKSG 246
+AL++AV+ P+SV ++A +F FYK G
Sbjct: 120 KALMKAVATVGPISVAIDAGHESFLFYKEG 149
>pdb|1ICF|A Chain A, Crystal Structure Of Mhc Class Ii Associated P41 Ii
Fragment In Complex With Cathepsin L
pdb|1ICF|C Chain C, Crystal Structure Of Mhc Class Ii Associated P41 Ii
Fragment In Complex With Cathepsin L
Length = 175
Score = 134 bits (337), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 73/150 (48%), Positives = 97/150 (64%), Gaps = 5/150 (3%)
Query: 100 PTSIDWREKGAVTHIKDQGQTGSSWAFSAVAAVEGITQITSRKLIELSGQQLVDCS--TD 157
P S+DWREKG VT +K+QGQ GS WAFSA A+EG + +LI LS Q LVDCS
Sbjct: 2 PRSVDWREKGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQG 61
Query: 158 NHGCSGGLMDKAFEYIIENKGLASEADYPYRREQGTCDKQKEKAVAATISKYEDLPQGDE 217
N GC+GGLMD AF+Y+ +N GL SE YPY + +C K K A + + D+P+ E
Sbjct: 62 NEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEESC-KYNPKYSVANDTGFVDIPK-QE 119
Query: 218 QALLQAVSK-QPVSVCVEASGRAFHFYKSG 246
+AL++AV+ P+SV ++A +F FYK G
Sbjct: 120 KALMKAVATVGPISVAIDAGHESFLFYKEG 149
>pdb|3KSE|A Chain A, Unreduced Cathepsin L In Complex With Stefin A
pdb|3KSE|B Chain B, Unreduced Cathepsin L In Complex With Stefin A
pdb|3KSE|C Chain C, Unreduced Cathepsin L In Complex With Stefin A
Length = 220
Score = 134 bits (337), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 73/150 (48%), Positives = 97/150 (64%), Gaps = 5/150 (3%)
Query: 100 PTSIDWREKGAVTHIKDQGQTGSSWAFSAVAAVEGITQITSRKLIELSGQQLVDCS--TD 157
P S+DWREKG VT +K+QGQ GS WAFSA A+EG + +LI LS Q LVDCS
Sbjct: 2 PRSVDWREKGYVTPVKNQGQCGSXWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQG 61
Query: 158 NHGCSGGLMDKAFEYIIENKGLASEADYPYRREQGTCDKQKEKAVAATISKYEDLPQGDE 217
N GC+GGLMD AF+Y+ +N GL SE YPY + +C K K A + + D+P+ E
Sbjct: 62 NEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEESC-KYNPKYSVANDAGFVDIPK-QE 119
Query: 218 QALLQAVSK-QPVSVCVEASGRAFHFYKSG 246
+AL++AV+ P+SV ++A +F FYK G
Sbjct: 120 KALMKAVATVGPISVAIDAGHESFLFYKEG 149
>pdb|3OVZ|A Chain A, Cathepsin K In Complex With A Covalent Inhibitor With A
Ketoamide Warhead
Length = 213
Score = 134 bits (336), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 67/146 (45%), Positives = 98/146 (67%), Gaps = 2/146 (1%)
Query: 102 SIDWREKGAVTHIKDQGQTGSSWAFSAVAAVEGITQITSRKLIELSGQQLVDCSTDNHGC 161
S+D+R+KG VT +K+QGQ GS WAFS+V A+EG + + KL+ LS Q LVDC ++N GC
Sbjct: 2 SVDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVSENDGC 61
Query: 162 SGGLMDKAFEYIIENKGLASEADYPYRREQGTCDKQKEKAVAATISKYEDLPQGDEQALL 221
GG M AF+Y+ +N+G+ SE YPY ++ +C AA Y ++P+G+E+AL
Sbjct: 62 GGGYMTNAFQYVQKNRGIDSEDAYPYVGQEESC-MYNPTGKAAKCRGYREIPEGNEKALK 120
Query: 222 QAVSK-QPVSVCVEASGRAFHFYKSG 246
+AV++ PVSV ++AS +F FY G
Sbjct: 121 RAVARVGPVSVAIDASLTSFQFYSKG 146
>pdb|2VHS|A Chain A, Cathsilicatein, A Chimera
pdb|2VHS|B Chain B, Cathsilicatein, A Chimera
pdb|2VHS|C Chain C, Cathsilicatein, A Chimera
pdb|2VHS|D Chain D, Cathsilicatein, A Chimera
Length = 217
Score = 132 bits (332), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 71/150 (47%), Positives = 99/150 (66%), Gaps = 5/150 (3%)
Query: 100 PTSIDWREKGAVTHIKDQGQTGSSWAFSAVAAVEGITQITSRKLIELSGQQLVDCS--TD 157
P S+DWREKG VT +K+QGQ G+S+AFSA A+EG + +LI LS Q LVDCS
Sbjct: 2 PRSVDWREKGYVTPVKNQGQCGASYAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQG 61
Query: 158 NHGCSGGLMDKAFEYIIENKGLASEADYPYRREQGTCDKQKEKAVAATISKYEDLPQGDE 217
N GC+GGLMD AF+Y+ +N GL SE YPY + +C + +VA + + D+P+ E
Sbjct: 62 NEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEESCKYNPKYSVANDVG-FVDIPK-QE 119
Query: 218 QALLQAVSK-QPVSVCVEASGRAFHFYKSG 246
+AL++AV+ P+SV ++A +F FYK G
Sbjct: 120 KALMKAVATVGPISVAIDAGHESFLFYKEG 149
>pdb|1VSN|A Chain A, Crystal Structure Of A Potent Small Molecule Inhibitor
Bound To Cathepsin K
Length = 215
Score = 132 bits (331), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 67/148 (45%), Positives = 95/148 (64%), Gaps = 2/148 (1%)
Query: 100 PTSIDWREKGAVTHIKDQGQTGSSWAFSAVAAVEGITQITSRKLIELSGQQLVDCSTDNH 159
P SID+R+KG VT +K+QGQ GS WAFS+V A+EG + + L+ L+ Q LVDC ++N
Sbjct: 2 PDSIDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKATGALLNLAPQNLVDCVSEND 61
Query: 160 GCSGGLMDKAFEYIIENKGLASEADYPYRREQGTCDKQKEKAVAATISKYEDLPQGDEQA 219
GC GG M AF+Y+ N+G+ SE YPY + +C AA Y ++P+G+E A
Sbjct: 62 GCGGGYMTNAFQYVQRNRGIDSEDAYPYVGQDESC-MYNPTGKAAKCRGYREIPEGNEAA 120
Query: 220 LLQAVSK-QPVSVCVEASGRAFHFYKSG 246
L +AV+ PVSV ++AS +F FY +G
Sbjct: 121 LKRAVAAVGPVSVAIDASLTSFQFYSAG 148
>pdb|3H6S|A Chain A, Strucure Of Clitocypin - Cathepsin V Complex
pdb|3H6S|B Chain B, Strucure Of Clitocypin - Cathepsin V Complex
pdb|3H6S|C Chain C, Strucure Of Clitocypin - Cathepsin V Complex
pdb|3H6S|D Chain D, Strucure Of Clitocypin - Cathepsin V Complex
pdb|3KFQ|A Chain A, Unreduced Cathepsin V In Complex With Stefin A
pdb|3KFQ|B Chain B, Unreduced Cathepsin V In Complex With Stefin A
Length = 221
Score = 129 bits (325), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 70/151 (46%), Positives = 95/151 (62%), Gaps = 4/151 (2%)
Query: 99 VPTSIDWREKGAVTHIKDQGQTGSSWAFSAVAAVEGITQITSRKLIELSGQQLVDCS--T 156
+P S+DWR+KG VT +K+Q Q GS WAFSA A+EG + KL+ LS Q LVDCS
Sbjct: 1 LPKSVDWRKKGYVTPVKNQKQCGSXWAFSATGALEGQMFRKTGKLVSLSEQNLVDCSRPQ 60
Query: 157 DNHGCSGGLMDKAFEYIIENKGLASEADYPYRREQGTCDKQKEKAVAATISKYEDLPQGD 216
N GC+GG M +AF+Y+ EN GL SE YPY C + E +VA + + + G
Sbjct: 61 GNQGCNGGFMARAFQYVKENGGLDSEESYPYVAVDEICKYRPENSVAQD-TGFTVVAPGK 119
Query: 217 EQALLQAVSK-QPVSVCVEASGRAFHFYKSG 246
E+AL++AV+ P+SV ++A +F FYKSG
Sbjct: 120 EKALMKAVATVGPISVAMDAGHSSFQFYKSG 150
>pdb|1FH0|A Chain A, Crystal Structure Of Human Cathepsin V Complexed With An
Irreversible Vinyl Sulfone Inhibitor
pdb|1FH0|B Chain B, Crystal Structure Of Human Cathepsin V Complexed With An
Irreversible Vinyl Sulfone Inhibitor
Length = 221
Score = 129 bits (325), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 70/151 (46%), Positives = 95/151 (62%), Gaps = 4/151 (2%)
Query: 99 VPTSIDWREKGAVTHIKDQGQTGSSWAFSAVAAVEGITQITSRKLIELSGQQLVDCST-- 156
+P S+DWR+KG VT +K+Q Q GS WAFSA A+EG + KL+ LS Q LVDCS
Sbjct: 1 LPKSVDWRKKGYVTPVKNQKQCGSCWAFSATGALEGQMFRKTGKLVSLSEQNLVDCSRPQ 60
Query: 157 DNHGCSGGLMDKAFEYIIENKGLASEADYPYRREQGTCDKQKEKAVAATISKYEDLPQGD 216
N GC+GG M +AF+Y+ EN GL SE YPY C + E +VA + + + G
Sbjct: 61 GNQGCNGGFMARAFQYVKENGGLDSEESYPYVAVDEICKYRPENSVAQD-TGFTVVAPGK 119
Query: 217 EQALLQAVSK-QPVSVCVEASGRAFHFYKSG 246
E+AL++AV+ P+SV ++A +F FYKSG
Sbjct: 120 EKALMKAVATVGPISVAMDAGHSSFQFYKSG 150
>pdb|1GEC|E Chain E, Glycyl Endopeptidase-complex With
Benzyloxycarbonyl-leucine-valine- Glycine-methylene
Covalently Bound To Cysteine 25
Length = 216
Score = 125 bits (315), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 64/148 (43%), Positives = 89/148 (60%), Gaps = 1/148 (0%)
Query: 99 VPTSIDWREKGAVTHIKDQGQTGSSWAFSAVAAVEGITQITSRKLIELSGQQLVDCSTDN 158
+P S+DWR KGAVT +K QG S WAFS VA VEGI +I + L+ELS Q+LVDC +
Sbjct: 1 LPESVDWRAKGAVTPVKHQGYCESCWAFSTVATVEGINKIKTGNLVELSEQELVDCDLQS 60
Query: 159 HGCSGGLMDKAFEYIIENKGLASEADYPYRREQGTCDKQKEKAVAATISKYEDLPQGDEQ 218
+GC+ G + +Y+ +N G+ A YPY +Q TC + + + +E
Sbjct: 61 YGCNRGYQSTSLQYVAQN-GIHLRAKYPYIAKQQTCRANQVGGPKVKTNGVGRVQSNNEG 119
Query: 219 ALLQAVSKQPVSVCVEASGRAFHFYKSG 246
+LL A++ QPVSV VE++GR F YK G
Sbjct: 120 SLLNAIAHQPVSVVVESAGRDFQNYKGG 147
>pdb|3F75|A Chain A, Activated Toxoplasma Gondii Cathepsin L (Tgcpl) In Complex
With Its Propeptide
Length = 224
Score = 124 bits (311), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 64/153 (41%), Positives = 91/153 (59%), Gaps = 5/153 (3%)
Query: 97 TDVPTSIDWREKGAVTHIKDQGQTGSSWAFSAVAAVEGITQITSRKLIELSGQQLVDCST 156
+++P +DWR +G VT +KDQ GS WAFS A+EG + KL+ LS Q+L+DCS
Sbjct: 5 SELPAGVDWRSRGCVTPVKDQRDCGSCWAFSTTGALEGAHCAKTGKLVSLSEQELMDCSR 64
Query: 157 --DNHGCSGGLMDKAFEYIIENKGLASEADYPYRREQGTCDKQK-EKAVAATISKYEDLP 213
N CSGG M+ AF+Y++++ G+ SE YPY C Q EK V I ++D+P
Sbjct: 65 AEGNQSCSGGEMNDAFQYVLDSGGICSEDAYPYLARDEECRAQSCEKVV--KILGFKDVP 122
Query: 214 QGDEQALLQAVSKQPVSVCVEASGRAFHFYKSG 246
+ E A+ A++K PVS+ +EA F FY G
Sbjct: 123 RRSEAAMKAALAKSPVSIAIEADQMPFQFYHEG 155
>pdb|3IOQ|A Chain A, Crystal Structure Of The Carica Candamarcensis Cysteine
Protease Cms1ms2 In Complex With E-64
Length = 213
Score = 123 bits (309), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 67/148 (45%), Positives = 93/148 (62%), Gaps = 1/148 (0%)
Query: 99 VPTSIDWREKGAVTHIKDQGQTGSSWAFSAVAAVEGITQITSRKLIELSGQQLVDCSTDN 158
+PTSIDWR+KGAVT +++QG GS W FS+VAAVEGI +I + +L+ LS Q+L+DC +
Sbjct: 1 IPTSIDWRQKGAVTPVRNQGGCGSCWTFSSVAAVEGINKIVTGQLLSLSEQELLDCERRS 60
Query: 159 HGCSGGLMDKAFEYIIENKGLASEADYPYRREQGTCDKQKEKAVAATISKYEDLPQGDEQ 218
+GC GG A +Y + N G+ YPY Q C + K +P+ +EQ
Sbjct: 61 YGCRGGFPLYALQY-VANSGIHLRQYYPYEGVQRQCRASQAKGPKVKTDGVGRVPRNNEQ 119
Query: 219 ALLQAVSKQPVSVCVEASGRAFHFYKSG 246
AL+Q ++ QPVS+ VEA GRAF Y+ G
Sbjct: 120 ALIQRIAIQPVSIVVEAKGRAFQNYRGG 147
>pdb|2P7U|A Chain A, The Crystal Structure Of Rhodesain, The Major Cysteine
Protease Of T. Brucei Rhodesiense, Bound To Inhibitor
K777
pdb|2P86|A Chain A, The High Resolution Crystal Structure Of Rohedsain, The
Major Cathepsin L Protease From T. Brucei Rhodesiense,
Bound To Inhibitor K11002
Length = 215
Score = 123 bits (309), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 66/153 (43%), Positives = 93/153 (60%), Gaps = 10/153 (6%)
Query: 100 PTSIDWREKGAVTHIKDQGQTGSSWAFSAVAAVEGITQITSRKLIELSGQQLVDCSTDNH 159
P ++DWREKGAVT +KDQGQ GS WAFS + +EG Q+ L+ LS Q LV C T +
Sbjct: 2 PAAVDWREKGAVTPVKDQGQCGSCWAFSTIGNIEGQWQVAGNPLVSLSEQMLVSCDTIDF 61
Query: 160 GCSGGLMDKAFEYIIENKG--LASEADYPY---RREQGTCDKQKEKAVAATISKYEDLPQ 214
GC GGLMD AF +I+ + G + +EA YPY EQ C + + A I+ + DLPQ
Sbjct: 62 GCGGGLMDNAFNWIVNSNGGNVFTEASYPYVSGNGEQPQCQMNGHE-IGAAITDHVDLPQ 120
Query: 215 GDEQALLQAVSKQ-PVSVCVEASGRAFHFYKSG 246
DE A+ +++ P+++ V+A+ +F Y G
Sbjct: 121 -DEDAIAAYLAENGPLAIAVDAT--SFMDYNGG 150
>pdb|3IMA|A Chain A, Complex Strcuture Of Tarocystatin And Papain
pdb|3IMA|C Chain C, Complex Strcuture Of Tarocystatin And Papain
pdb|3LFY|A Chain A, Ctd Of Tarocystatin In Complex With Papain
pdb|3LFY|C Chain C, Ctd Of Tarocystatin In Complex With Papain
Length = 212
Score = 119 bits (298), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 59/148 (39%), Positives = 88/148 (59%), Gaps = 1/148 (0%)
Query: 99 VPTSIDWREKGAVTHIKDQGQTGSSWAFSAVAAVEGITQITSRKLIELSGQQLVDCSTDN 158
+P +DWR+KGAVT +K+QG GS WAFSAV +EGI +I + L E S Q+L+DC +
Sbjct: 1 IPEYVDWRQKGAVTPVKNQGSCGSXWAFSAVVTIEGIIKIRTGNLNEYSEQELLDCDRRS 60
Query: 159 HGCSGGLMDKAFEYIIENKGLASEADYPYRREQGTCDKQKEKAVAATISKYEDLPQGDEQ 218
+GC+GG A + ++ G+ YPY Q C +++ AA + +E
Sbjct: 61 YGCNGGYPWSALQ-LVAQYGIHYRNTYPYEGVQRYCRSREKGPYAAKTDGVRQVQPYNEG 119
Query: 219 ALLQAVSKQPVSVCVEASGRAFHFYKSG 246
ALL +++ QPVSV +EA+G+ F Y+ G
Sbjct: 120 ALLYSIANQPVSVVLEAAGKDFQLYRGG 147
>pdb|1KHP|A Chain A, Monoclinic Form Of Papain/zlfg-dam Covalent Complex
pdb|1KHQ|A Chain A, Orthorhombic Form Of PapainZLFG-Dam Covalent Complex
pdb|1PPN|A Chain A, Structure Of Monoclinic Papain At 1.60 Angstroms
Resolution
pdb|3E1Z|B Chain B, Crystal Structure Of The Parasite Protesase Inhibitor
Chagasin In Complex With Papain
Length = 212
Score = 119 bits (298), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 59/148 (39%), Positives = 88/148 (59%), Gaps = 1/148 (0%)
Query: 99 VPTSIDWREKGAVTHIKDQGQTGSSWAFSAVAAVEGITQITSRKLIELSGQQLVDCSTDN 158
+P +DWR+KGAVT +K+QG GS WAFSAV +EGI +I + L E S Q+L+DC +
Sbjct: 1 IPEYVDWRQKGAVTPVKNQGSCGSCWAFSAVVTIEGIIKIRTGNLNEYSEQELLDCDRRS 60
Query: 159 HGCSGGLMDKAFEYIIENKGLASEADYPYRREQGTCDKQKEKAVAATISKYEDLPQGDEQ 218
+GC+GG A + ++ G+ YPY Q C +++ AA + +E
Sbjct: 61 YGCNGGYPWSALQ-LVAQYGIHYRNTYPYEGVQRYCRSREKGPYAAKTDGVRQVQPYNEG 119
Query: 219 ALLQAVSKQPVSVCVEASGRAFHFYKSG 246
ALL +++ QPVSV +EA+G+ F Y+ G
Sbjct: 120 ALLYSIANQPVSVVLEAAGKDFQLYRGG 147
>pdb|2CIO|A Chain A, The High Resolution X-Ray Structure Of Papain Complexed
With Fragments Of The Trypanosoma Brucei Cysteine
Protease Inhibitor Icp
Length = 212
Score = 118 bits (295), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 58/148 (39%), Positives = 88/148 (59%), Gaps = 1/148 (0%)
Query: 99 VPTSIDWREKGAVTHIKDQGQTGSSWAFSAVAAVEGITQITSRKLIELSGQQLVDCSTDN 158
+P +DWR+KGAVT +K+QG GS WAFSAV +EGI +I + L + S Q+L+DC +
Sbjct: 1 IPEYVDWRQKGAVTPVKNQGSCGSXWAFSAVVTIEGIIKIRTGNLNQYSEQELLDCDRRS 60
Query: 159 HGCSGGLMDKAFEYIIENKGLASEADYPYRREQGTCDKQKEKAVAATISKYEDLPQGDEQ 218
+GC+GG A + ++ G+ YPY Q C +++ AA + +E
Sbjct: 61 YGCNGGYPWSALQ-LVAQYGIHYRNTYPYEGVQRYCRSREKGPYAAKTDGVRQVQPYNEG 119
Query: 219 ALLQAVSKQPVSVCVEASGRAFHFYKSG 246
ALL +++ QPVSV +EA+G+ F Y+ G
Sbjct: 120 ALLYSIANQPVSVVLEAAGKDFQLYRGG 147
>pdb|8PCH|A Chain A, Crystal Structure Of Porcine Cathepsin H Determined At 2.1
Angstrom Resolution: Location Of The Mini-Chain
C-Terminal Carboxyl Group Defines Cathepsin H
Aminopeptidase Function
pdb|1NB3|A Chain A, Crystal Structure Of Stefin A In Complex With Cathepsin H:
N-Terminal Residues Of Inhibitors Can Adapt To The
Active Sites Of Endo-And Exopeptidases
pdb|1NB3|B Chain B, Crystal Structure Of Stefin A In Complex With Cathepsin H:
N-Terminal Residues Of Inhibitors Can Adapt To The
Active Sites Of Endo-And Exopeptidases
pdb|1NB3|C Chain C, Crystal Structure Of Stefin A In Complex With Cathepsin H:
N-Terminal Residues Of Inhibitors Can Adapt To The
Active Sites Of Endo-And Exopeptidases
pdb|1NB3|D Chain D, Crystal Structure Of Stefin A In Complex With Cathepsin H:
N-Terminal Residues Of Inhibitors Can Adapt To The
Active Sites Of Endo-And Exopeptidases
pdb|1NB5|A Chain A, Crystal Structure Of Stefin A In Complex With Cathepsin H
pdb|1NB5|B Chain B, Crystal Structure Of Stefin A In Complex With Cathepsin H
pdb|1NB5|C Chain C, Crystal Structure Of Stefin A In Complex With Cathepsin H
pdb|1NB5|D Chain D, Crystal Structure Of Stefin A In Complex With Cathepsin H
Length = 220
Score = 117 bits (293), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 63/151 (41%), Positives = 91/151 (60%), Gaps = 6/151 (3%)
Query: 100 PTSIDWREKG-AVTHIKDQGQTGSSWAFSAVAAVEGITQITSRKLIELSGQQLVDCSTD- 157
P S+DWR+KG V+ +K+QG GS W FS A+E I + K++ L+ QQLVDC+ +
Sbjct: 2 PPSMDWRKKGNFVSPVKNQGSCGSCWTFSTTGALESAVAIATGKMLSLAEQQLVDCAQNF 61
Query: 158 -NHGCSGGLMDKAFEYIIENKGLASEADYPYRREQGTCDKQKEKAVAATISKYEDLPQGD 216
NHGC GGL +AFEYI NKG+ E YPY+ + C Q +KA+ A + ++ D
Sbjct: 62 NNHGCQGGLPSQAFEYIRYNKGIMGEDTYPYKGQDDHCKFQPDKAI-AFVKDVANITMND 120
Query: 217 EQALLQAVS-KQPVSVCVEASGRAFHFYKSG 246
E+A+++AV+ PVS E + F Y+ G
Sbjct: 121 EEAMVEAVALYNPVSFAFEVT-NDFLMYRKG 150
>pdb|2B1M|A Chain A, Crystal Structure Of A Papain-Fold Protein Without The
Catalytic Cysteine From Seeds Of Pachyrhizus Erosus
pdb|2B1N|A Chain A, Crystal Structure Of A Papain-Fold Protein Without The
Catalytic Cysteine From Seeds Of Pachyrhizus Erosus
Length = 246
Score = 116 bits (290), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 64/156 (41%), Positives = 89/156 (57%), Gaps = 10/156 (6%)
Query: 98 DVPTSIDWREKGAVTHIKDQGQTGSSWAFSAVAAVEGITQITSRKLIELSGQQLVDCSTD 157
D P S DW +KG +T +K QGQ GS WAFSA A+E I + L+ LS Q+L+DC +
Sbjct: 1 DAPESWDWSKKGVITKVKFQGQCGSGWAFSATGAIEAAHAIATGNLVSLSEQELIDCVDE 60
Query: 158 NHGCSGGLMDKAFEYIIENKGLASEADYPYRREQGTCDKQKEKAVAATISKY-------E 210
+ GC G ++FE+++++ G+ASEADYPY+ G C K E TI Y E
Sbjct: 61 SEGCYNGWHYQSFEWVVKHGGIASEADYPYKARDGKC-KANEIQDKVTIDNYGVQILSNE 119
Query: 211 DLPQGDEQALLQAVSKQPVSVCVEASGRAFHFYKSG 246
E +L V +QP+SV ++A + FHFY G
Sbjct: 120 STESEAESSLQSFVLEQPISVSIDA--KDFHFYSGG 153
>pdb|1STF|E Chain E, The Refined 2.4 Angstroms X-Ray Crystal Structure Of
Recombinant Human Stefin B In Complex With The Cysteine
Proteinase Papain: A Novel Type Of Proteinase Inhibitor
Interaction
pdb|9PAP|A Chain A, Structure Of Papain Refined At 1.65 Angstroms Resolution
Length = 212
Score = 115 bits (289), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 56/148 (37%), Positives = 88/148 (59%), Gaps = 1/148 (0%)
Query: 99 VPTSIDWREKGAVTHIKDQGQTGSSWAFSAVAAVEGITQITSRKLIELSGQQLVDCSTDN 158
+P +DWR+KGAVT +K+QG GS WAFSAV +EGI +I + L + S Q+L+DC +
Sbjct: 1 IPEYVDWRQKGAVTPVKNQGSCGSXWAFSAVVTIEGIIKIRTGNLNQYSEQELLDCDRRS 60
Query: 159 HGCSGGLMDKAFEYIIENKGLASEADYPYRREQGTCDKQKEKAVAATISKYEDLPQGDEQ 218
+GC+GG A + ++ G+ YPY Q C +++ AA + ++
Sbjct: 61 YGCNGGYPWSALQ-LVAQYGIHYRNTYPYEGVQRYCRSREKGPYAAKTDGVRQVQPYNQG 119
Query: 219 ALLQAVSKQPVSVCVEASGRAFHFYKSG 246
ALL +++ QPVSV ++A+G+ F Y+ G
Sbjct: 120 ALLYSIANQPVSVVLQAAGKDFQLYRGG 147
>pdb|1PIP|A Chain A, Crystal Structure Of
Papain-Succinyl-Gln-Val-Val-Ala-Ala-P- Nitroanilide
Complex At 1.7 Angstroms Resolution: Noncovalent Binding
Mode Of A Common Sequence Of Endogenous Thiol Protease
Inhibitors
pdb|1POP|A Chain A, X-Ray Crystallographic Structure Of A Papain-Leupeptin
Complex
pdb|1CVZ|A Chain A, Crystal Structure Analysis Of Papain With
Clik148(Cathepsin L Specific Inhibitor)
pdb|1BP4|A Chain A, Use Of Papain As A Model For The Structure-Based Design Of
Cathepsin K Inhibitors. Crystal Structures Of Two Papain
Inhibitor Complexes Demonstrate Binding To S'-Subsites.
pdb|1BQI|A Chain A, Use Of Papain As A Model For The Structure-Based Design Of
Cathepsin K Inhibitors. Crystal Structures Of Two Papain
Inhibitor Complexes Demonstrate Binding To S'-Subsites.
pdb|1PE6|A Chain A, Refined X-Ray Structure Of Papain(Dot)e-64-C Complex At
2.1-Angstroms Resolution
pdb|1PPD|A Chain A, Restrained Least-Squares Refinement Of The Sulfhydryl
Protease Papain To 2.0 Angstroms
pdb|2PAD|A Chain A, Binding Of Chloromethyl Ketone Substrate Analogues To
Crystalline Papain
pdb|4PAD|A Chain A, Binding Of Chloromethyl Ketone Substrate Analogues To
Crystalline Papain
pdb|6PAD|A Chain A, Binding Of Chloromethyl Ketone Substrate Analogues To
Crystalline Papain
pdb|1PAD|A Chain A, Binding Of Chloromethyl Ketone Substrate Analogues To
Crystalline Papain
pdb|5PAD|A Chain A, Binding Of Chloromethyl Ketone Substrate Analogues To
Crystalline Papain
Length = 212
Score = 115 bits (289), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 56/148 (37%), Positives = 88/148 (59%), Gaps = 1/148 (0%)
Query: 99 VPTSIDWREKGAVTHIKDQGQTGSSWAFSAVAAVEGITQITSRKLIELSGQQLVDCSTDN 158
+P +DWR+KGAVT +K+QG GS WAFSAV +EGI +I + L + S Q+L+DC +
Sbjct: 1 IPEYVDWRQKGAVTPVKNQGSCGSCWAFSAVVTIEGIIKIRTGNLNQYSEQELLDCDRRS 60
Query: 159 HGCSGGLMDKAFEYIIENKGLASEADYPYRREQGTCDKQKEKAVAATISKYEDLPQGDEQ 218
+GC+GG A + ++ G+ YPY Q C +++ AA + ++
Sbjct: 61 YGCNGGYPWSALQ-LVAQYGIHYRNTYPYEGVQRYCRSREKGPYAAKTDGVRQVQPYNQG 119
Query: 219 ALLQAVSKQPVSVCVEASGRAFHFYKSG 246
ALL +++ QPVSV ++A+G+ F Y+ G
Sbjct: 120 ALLYSIANQPVSVVLQAAGKDFQLYRGG 147
>pdb|1PPP|A Chain A, Crystal Structure Of Papain-E64-C Complex. Binding
Diversity Of E64-C To Papain S2 And S3 Subsites
Length = 212
Score = 114 bits (286), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 56/147 (38%), Positives = 87/147 (59%), Gaps = 1/147 (0%)
Query: 100 PTSIDWREKGAVTHIKDQGQTGSSWAFSAVAAVEGITQITSRKLIELSGQQLVDCSTDNH 159
P +DWR+KGAVT +K+QG GS WAFSAV +EGI +I + L + S Q+L+DC ++
Sbjct: 2 PEYVDWRQKGAVTPVKNQGSCGSCWAFSAVVTIEGIIKIRTGNLNQYSEQELLDCDRRSY 61
Query: 160 GCSGGLMDKAFEYIIENKGLASEADYPYRREQGTCDKQKEKAVAATISKYEDLPQGDEQA 219
GC+GG A + ++ G+ YPY Q C +++ AA + ++ A
Sbjct: 62 GCNGGYPWSALQ-LVAQYGIHYRNTYPYEGVQRYCRSREKGPYAAKTDGVRQVQPYNQGA 120
Query: 220 LLQAVSKQPVSVCVEASGRAFHFYKSG 246
LL +++ QPVSV ++A+G+ F Y+ G
Sbjct: 121 LLYSIANQPVSVVLQAAGKDFQLYRGG 147
>pdb|1AIM|A Chain A, Cruzain Inhibited By
Benzoyl-Tyrosine-Alanine-Fluoromethylketone
Length = 215
Score = 112 bits (281), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 61/142 (42%), Positives = 81/142 (57%), Gaps = 6/142 (4%)
Query: 100 PTSIDWREKGAVTHIKDQGQTGSSWAFSAVAAVEGITQITSRKLIELSGQQLVDCSTDNH 159
P ++DWR +GAVT +KDQGQ GS WAFSA+ VE + L LS Q LV C +
Sbjct: 2 PAAVDWRARGAVTAVKDQGQCGSCWAFSAIGNVECQWFLAGHPLTNLSEQMLVSCDKTDS 61
Query: 160 GCSGGLMDKAFEYIIE--NKGLASEADYPYRREQGT---CDKQKEKAVAATISKYEDLPQ 214
GCSGGLM+ AFE+I++ N + +E YPY +G C V ATI+ + +LPQ
Sbjct: 62 GCSGGLMNNAFEWIVQENNGAVYTEDSYPYASGEGISPPCTTSGHT-VGATITGHVELPQ 120
Query: 215 GDEQALLQAVSKQPVSVCVEAS 236
+ Q PV+V V+AS
Sbjct: 121 DEAQIAAWLAVNGPVAVAVDAS 142
>pdb|1EWP|A Chain A, Cruzain Bound To Mor-Leu-Hpq
pdb|1F29|A Chain A, Crystal Structure Analysis Of Cruzain Bound To A Vinyl
Sulfone Derived Inhibitor (I)
pdb|1F29|B Chain B, Crystal Structure Analysis Of Cruzain Bound To A Vinyl
Sulfone Derived Inhibitor (I)
pdb|1F29|C Chain C, Crystal Structure Analysis Of Cruzain Bound To A Vinyl
Sulfone Derived Inhibitor (I)
pdb|1F2A|A Chain A, Crystal Structure Analysis Of Cruzain Bound To A Vinyl
Sulfone Derived Inhibitor (Ii)
pdb|1F2B|A Chain A, Crystal Structure Analysis Of Cruzain Bound To Vinyl
Sulfone Derived Inhibitor (Iii)
pdb|1F2C|A Chain A, Crystal Structure Analysis Of Cryzain Bound To Vinyl
Sulfone Derived Inhibitor (Iv)
pdb|1ME3|A Chain A, High Resolution Crystal Structure Analysis Of Cruzain Non-
Covalently Bound To A Hydroxymethyl Ketone Inhibitor
(Ii)
pdb|1ME4|A Chain A, High Resolution Crystal Structure Analysis Of Cruzain
Non-Covalently Bound To A Hydroxymethyl Ketone Inhibitor
(I)
pdb|1EWL|A Chain A, Crystal Structure Of Cruzain Bound To Wrr-99
pdb|1EWM|A Chain A, The Cysteine Protease Cruzain Bound To Wrr-112
pdb|1EWO|A Chain A, The Cysteine Protease Cruzain Bound To Wrr-204
pdb|1U9Q|X Chain X, Crystal Structure Of Cruzain Bound To An Alpha-Ketoester
pdb|2AIM|A Chain A, Cruzain Inhibited With
Benzoyl-Arginine-Alanine-Fluoromethylketone
pdb|2OZ2|A Chain A, Crystal Structure Analysis Of Cruzain Bound To Vinyl
Sulfone Derived Inhibitor (K11777)
pdb|2OZ2|C Chain C, Crystal Structure Analysis Of Cruzain Bound To Vinyl
Sulfone Derived Inhibitor (K11777)
pdb|3I06|A Chain A, Crystal Structure Of Cruzain Covalently Bound To A Purine
Nitrile
pdb|3KKU|A Chain A, Cruzain In Complex With A Non-Covalent Ligand
pdb|3LXS|A Chain A, Crystal Structure Analysis Of Cruzain Bound To Vinyl
Sulfone Derived Inhibitor (Wrr483)
pdb|3LXS|C Chain C, Crystal Structure Analysis Of Cruzain Bound To Vinyl
Sulfone Derived Inhibitor (Wrr483)
Length = 215
Score = 112 bits (281), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 61/142 (42%), Positives = 81/142 (57%), Gaps = 6/142 (4%)
Query: 100 PTSIDWREKGAVTHIKDQGQTGSSWAFSAVAAVEGITQITSRKLIELSGQQLVDCSTDNH 159
P ++DWR +GAVT +KDQGQ GS WAFSA+ VE + L LS Q LV C +
Sbjct: 2 PAAVDWRARGAVTAVKDQGQCGSCWAFSAIGNVECQWFLAGHPLTNLSEQMLVSCDKTDS 61
Query: 160 GCSGGLMDKAFEYIIE--NKGLASEADYPYRREQGT---CDKQKEKAVAATISKYEDLPQ 214
GCSGGLM+ AFE+I++ N + +E YPY +G C V ATI+ + +LPQ
Sbjct: 62 GCSGGLMNNAFEWIVQENNGAVYTEDSYPYASGEGISPPCTTSGHT-VGATITGHVELPQ 120
Query: 215 GDEQALLQAVSKQPVSVCVEAS 236
+ Q PV+V V+AS
Sbjct: 121 DEAQIAAWLAVNGPVAVAVDAS 142
>pdb|3IUT|A Chain A, The Crystal Structure Of Cruzain In Complex With A
Tetrafluorophenoxymethyl Ketone Inhibitor
Length = 221
Score = 112 bits (279), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 60/142 (42%), Positives = 81/142 (57%), Gaps = 6/142 (4%)
Query: 100 PTSIDWREKGAVTHIKDQGQTGSSWAFSAVAAVEGITQITSRKLIELSGQQLVDCSTDNH 159
P ++DWR +GAVT +KDQGQ GS WAFSA+ VE + L L+ Q LV C +
Sbjct: 2 PAAVDWRARGAVTAVKDQGQCGSCWAFSAIGNVECQWFLAGHPLTNLAEQMLVSCDKTDS 61
Query: 160 GCSGGLMDKAFEYIIE--NKGLASEADYPYRREQGT---CDKQKEKAVAATISKYEDLPQ 214
GCSGGLM+ AFE+I++ N + +E YPY +G C V ATI+ + +LPQ
Sbjct: 62 GCSGGLMNNAFEWIVQENNGAVYTEDSYPYASGEGISPPCTTSGHT-VGATITGHVELPQ 120
Query: 215 GDEQALLQAVSKQPVSVCVEAS 236
+ Q PV+V V+AS
Sbjct: 121 DEAQIAAWLAVNGPVAVAVDAS 142
>pdb|3HD3|A Chain A, High Resolution Crystal Structure Of Cruzain Bound To The
Vinyl Sulfone Inhibitor Smdc-256047
pdb|3HD3|B Chain B, High Resolution Crystal Structure Of Cruzain Bound To The
Vinyl Sulfone Inhibitor Smdc-256047
Length = 215
Score = 112 bits (279), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 60/142 (42%), Positives = 81/142 (57%), Gaps = 6/142 (4%)
Query: 100 PTSIDWREKGAVTHIKDQGQTGSSWAFSAVAAVEGITQITSRKLIELSGQQLVDCSTDNH 159
P ++DWR +GAVT +KDQGQ GS WAFSA+ VE + L L+ Q LV C +
Sbjct: 2 PAAVDWRARGAVTAVKDQGQCGSCWAFSAIGNVECQWFLAGHPLTNLAEQMLVSCDKTDS 61
Query: 160 GCSGGLMDKAFEYIIE--NKGLASEADYPYRREQGT---CDKQKEKAVAATISKYEDLPQ 214
GCSGGLM+ AFE+I++ N + +E YPY +G C V ATI+ + +LPQ
Sbjct: 62 GCSGGLMNNAFEWIVQENNGAVYTEDSYPYASGEGISPPCTTSGHT-VGATITGHVELPQ 120
Query: 215 GDEQALLQAVSKQPVSVCVEAS 236
+ Q PV+V V+AS
Sbjct: 121 DEAQIAAWLAVNGPVAVAVDAS 142
>pdb|3PNR|A Chain A, Structure Of Pbicp-C In Complex With Falcipain-2
Length = 240
Score = 102 bits (255), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 61/146 (41%), Positives = 82/146 (56%), Gaps = 9/146 (6%)
Query: 104 DWREKGAVTHIKDQGQTGSSWAFSAVAAVEGITQITSRKLIELSGQQLVDCSTDNHGCSG 163
DWR VT +KDQ GS+WAFS++ +VE I KLI LS Q+LVDCS N+GC+G
Sbjct: 22 DWRLHSGVTPVKDQKNCGSAWAFSSIGSVESQYAIRKNKLITLSEQELVDCSFKNYGCNG 81
Query: 164 GLMDKAFEYIIENKGLASEADYPYRREQ-GTC--DKQKEKAVAATISKYEDLPQGDEQAL 220
GL++ AFE +IE G+ + DYPY + C D+ EK I Y +P +
Sbjct: 82 GLINNAFEDMIELGGICPDGDYPYVSDAPNLCNIDRCTEK---YGIKNYLSVPDNKLKEA 138
Query: 221 LQAVSKQPVSVCVEASGRAFHFYKSG 246
L+ + P+S+ V S F FYK G
Sbjct: 139 LRFLG--PISISVAVS-DDFAFYKEG 161
>pdb|1YVB|A Chain A, The Plasmodium Falciparum Cysteine Protease Falcipain-2
pdb|2GHU|A Chain A, Crystal Structure Of Falcipain-2 From Plasmodium
Falciparum
pdb|2GHU|B Chain B, Crystal Structure Of Falcipain-2 From Plasmodium
Falciparum
pdb|2GHU|C Chain C, Crystal Structure Of Falcipain-2 From Plasmodium
Falciparum
pdb|2GHU|D Chain D, Crystal Structure Of Falcipain-2 From Plasmodium
Falciparum
pdb|2OUL|A Chain A, The Structure Of Chagasin In Complex With A Cysteine
Protease Clarifies The Binding Mode And Evolution Of A
New Inhibitor Family
pdb|3BPF|A Chain A, Crystal Structure Of Falcipain-2 With Its Inhibitor, E64
pdb|3BPF|B Chain B, Crystal Structure Of Falcipain-2 With Its Inhibitor, E64
pdb|3BPF|C Chain C, Crystal Structure Of Falcipain-2 With Its Inhibitor, E64
pdb|3BPF|D Chain D, Crystal Structure Of Falcipain-2 With Its Inhibitor, E64
Length = 241
Score = 102 bits (254), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 57/143 (39%), Positives = 76/143 (53%), Gaps = 3/143 (2%)
Query: 104 DWREKGAVTHIKDQGQTGSSWAFSAVAAVEGITQITSRKLIELSGQQLVDCSTDNHGCSG 163
DWR VT +KDQ GS WAFS++ +VE I KLI LS Q+LVDCS N+GC+G
Sbjct: 23 DWRLHSGVTPVKDQKNCGSCWAFSSIGSVESQYAIRKNKLITLSEQELVDCSFKNYGCNG 82
Query: 164 GLMDKAFEYIIENKGLASEADYPYRREQGTCDKQKEKAVAATISKYEDLPQGDEQALLQA 223
GL++ AFE +IE G+ + DYPY + I Y +P + L+
Sbjct: 83 GLINNAFEDMIELGGICPDGDYPYVSDAPNLCNIDRCTEKYGIKNYLSVPDNKLKEALRF 142
Query: 224 VSKQPVSVCVEASGRAFHFYKSG 246
+ P+S+ V S F FYK G
Sbjct: 143 LG--PISISVAVS-DDFAFYKEG 162
>pdb|3BPM|A Chain A, Crystal Structure Of Falcipain-3 With Its Inhibitor,
Leupeptin
pdb|3BPM|B Chain B, Crystal Structure Of Falcipain-3 With Its Inhibitor,
Leupeptin
pdb|3BWK|A Chain A, Crystal Structure Of Falcipain-3 With Its Inhibitor,
K11017
pdb|3BWK|B Chain B, Crystal Structure Of Falcipain-3 With Its Inhibitor,
K11017
pdb|3BWK|C Chain C, Crystal Structure Of Falcipain-3 With Its Inhibitor,
K11017
pdb|3BWK|D Chain D, Crystal Structure Of Falcipain-3 With Its Inhibitor,
K11017
Length = 243
Score = 98.6 bits (244), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 56/143 (39%), Positives = 75/143 (52%), Gaps = 3/143 (2%)
Query: 104 DWREKGAVTHIKDQGQTGSSWAFSAVAAVEGITQITSRKLIELSGQQLVDCSTDNHGCSG 163
DWR G VT +KDQ GS WAFS+V +VE I + L S Q+LVDCS N+GC G
Sbjct: 25 DWRLHGGVTPVKDQALCGSCWAFSSVGSVESQYAIRKKALFLFSEQELVDCSVKNNGCYG 84
Query: 164 GLMDKAFEYIIENKGLASEADYPYRREQGTCDKQKEKAVAATISKYEDLPQGDEQALLQA 223
G + AF+ +I+ GL S+ DYPY K TI Y +P + L+
Sbjct: 85 GYITNAFDDMIDLGGLCSQDDYPYVSNLPETCNLKRCNERYTIKSYVSIPDDKFKEALRY 144
Query: 224 VSKQPVSVCVEASGRAFHFYKSG 246
+ P+S+ + AS F FY+ G
Sbjct: 145 LG--PISISIAASDD-FAFYRGG 164
>pdb|1M6D|A Chain A, Crystal Structure Of Human Cathepsin F
pdb|1M6D|B Chain B, Crystal Structure Of Human Cathepsin F
Length = 214
Score = 83.6 bits (205), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 56/147 (38%), Positives = 74/147 (50%), Gaps = 3/147 (2%)
Query: 100 PTSIDWREKGAVTHIKDQGQTGSSWAFSAVAAVEGITQITSRKLIELSGQQLVDCSTDNH 159
P DWR KGAVT +KDQG GS WAFS VEG + L+ LS Q+L+DC +
Sbjct: 2 PPEWDWRSKGAVTKVKDQGMCGSCWAFSVTGNVEGQWFLNQGTLLSLSEQELLDCDKMDK 61
Query: 160 GCSGGLMDKAFEYIIENKGLASEADYPYRREQGTCDKQKEKAVAATISKYEDLPQGDEQA 219
C GGL A+ I GL +E DY Y+ +C EKA I +L Q +++
Sbjct: 62 ACMGGLPSNAYSAIKNLGGLETEDDYSYQGHMQSCQFSAEKA-KVYIQDSVELSQNEQKL 120
Query: 220 LLQAVSKQPVSVCVEASGRAFHFYKSG 246
+ P+SV + A G FY+ G
Sbjct: 121 AAWLAKRGPISVAINAFG--MQFYRHG 145
>pdb|1XKG|A Chain A, Crystal Structure Of The Major House Dust Mite Allergen
Der P 1 In Its Pro Form At 1.61 A Resolution
Length = 312
Score = 79.3 bits (194), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 64/232 (27%), Positives = 112/232 (48%), Gaps = 15/232 (6%)
Query: 4 PSIVAKHEQWMAQHGRTYKD-ELEKAMRLNIFKQNLEYIGKANKEGNRTYKLGTNEFSDL 62
PS + E++ ++Y E E+A R N F ++++Y+ ++ N SDL
Sbjct: 2 PSSIKTFEEYKKAFNKSYATFEDEEAARKN-FLESVKYV--------QSNGGAINHLSDL 52
Query: 63 TNEEFRASYTGYNTPVPSLSRQSSLPSNFKYQNVT-DVPTSIDWREKGAVTHIKDQGQTG 121
+ +EF+ + L Q L + ++ + P ID R+ VT I+ QG G
Sbjct: 53 SLDEFKNRFLMSAEAFEHLKTQFDLNAETNACSINGNAPAEIDLRQMRTVTPIRMQGGCG 112
Query: 122 SSWAFSAVAAVEGITQITSRKLIELSGQQLVDCSTDNHGCSGGLMDKAFEYIIENKGLAS 181
S+WAFS VAA E + ++L+ Q+LVDC++ HGC G + + EYI N G+
Sbjct: 113 SAWAFSGVAATESAYLAYRDQSLDLAEQELVDCASQ-HGCHGDTIPRGIEYIQHN-GVVQ 170
Query: 182 EADYPYRREQGTCDKQKEKAVAATISKYEDLPQGDEQALLQAVSKQPVSVCV 233
E+ Y Y + +C ++ A IS Y + + + +A+++ ++ V
Sbjct: 171 ESYYRYVAREQSC--RRPNAQRFGISNYCQIYPPNANKIREALAQTHSAIAV 220
>pdb|3D6S|A Chain A, Crystal Structure Of Mite Allergen Der F 1
pdb|3D6S|B Chain B, Crystal Structure Of Mite Allergen Der F 1
pdb|3D6S|C Chain C, Crystal Structure Of Mite Allergen Der F 1
pdb|3RVV|A Chain A, Crystal Structure Of Der F 1 Complexed With Fab 4c1
Length = 223
Score = 78.6 bits (192), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 51/152 (33%), Positives = 76/152 (50%), Gaps = 7/152 (4%)
Query: 95 NVTDVPTSIDWREKGAVTHIKDQGQTGSSWAFSAVAAVEGITQITSRKLIELSGQQLVDC 154
N +VP+ +D R VT I+ QG GS WAFS VAA E ++LS Q+LVDC
Sbjct: 7 NSVNVPSELDLRSLRTVTPIRMQGGCGSCWAFSGVAATESAYLAYRNTSLDLSEQELVDC 66
Query: 155 STDNHGCSGGLMDKAFEYIIENKGLASEADYPYRREQGTCDKQKEKAVAATISKYEDLPQ 214
++ HGC G + + EYI +N G+ E YPY + C + + IS Y +
Sbjct: 67 AS-QHGCHGDTIPRGIEYIQQN-GVVEERSYPYVAREQRCRRPNSQHYG--ISNYCQIYP 122
Query: 215 GDEQALLQAVSKQPVSVCVEAS---GRAFHFY 243
D + + +A+++ ++ V RAF Y
Sbjct: 123 PDVKQIREALTQTHTAIAVIIGIKDLRAFQHY 154
>pdb|3F5V|A Chain A, C2 Crystal Form Of Mite Allergen Der P 1
pdb|3F5V|B Chain B, C2 Crystal Form Of Mite Allergen Der P 1
Length = 222
Score = 71.2 bits (173), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 43/136 (31%), Positives = 73/136 (53%), Gaps = 4/136 (2%)
Query: 98 DVPTSIDWREKGAVTHIKDQGQTGSSWAFSAVAAVEGITQITSRKLIELSGQQLVDCSTD 157
+ P ID R+ VT I+ QG GS WAFS VAA E ++ ++L+ Q+LVDC++
Sbjct: 9 NAPAEIDLRQMRTVTPIRMQGGCGSXWAFSGVAATESAYLAYRQQSLDLAEQELVDCASQ 68
Query: 158 NHGCSGGLMDKAFEYIIENKGLASEADYPYRREQGTCDKQKEKAVAATISKYEDLPQGDE 217
HGC G + + EY I++ G+ E+ Y Y + +C ++ A IS Y + +
Sbjct: 69 -HGCHGDTIPRGIEY-IQHNGVVQESYYRYVAREQSC--RRPNAQRFGISNYCQIYPPNA 124
Query: 218 QALLQAVSKQPVSVCV 233
+ +A+++ ++ V
Sbjct: 125 NKIREALAQTHSAIAV 140
>pdb|2AS8|A Chain A, Crystal Structure Of Mature And Fully Active Der P 1
Allergen
pdb|2AS8|B Chain B, Crystal Structure Of Mature And Fully Active Der P 1
Allergen
Length = 222
Score = 70.9 bits (172), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 43/136 (31%), Positives = 73/136 (53%), Gaps = 4/136 (2%)
Query: 98 DVPTSIDWREKGAVTHIKDQGQTGSSWAFSAVAAVEGITQITSRKLIELSGQQLVDCSTD 157
+ P ID R+ VT I+ QG GS WAFS VAA E ++ ++L+ Q+LVDC++
Sbjct: 9 NAPAEIDLRQMRTVTPIRMQGGCGSCWAFSGVAATESAYLAYRQQSLDLAEQELVDCASQ 68
Query: 158 NHGCSGGLMDKAFEYIIENKGLASEADYPYRREQGTCDKQKEKAVAATISKYEDLPQGDE 217
HGC G + + EY I++ G+ E+ Y Y + +C ++ A IS Y + +
Sbjct: 69 -HGCHGDTIPRGIEY-IQHNGVVQESYYRYVAREQSC--RRPNAQRFGISNYCQIYPPNA 124
Query: 218 QALLQAVSKQPVSVCV 233
+ +A+++ ++ V
Sbjct: 125 NKIREALAQTHSAIAV 140
>pdb|3RVW|A Chain A, Crystal Structure Of Der P 1 Complexed With Fab 4c1
pdb|3RVX|A Chain A, Crystal Structure Of Der P 1 Complexed With Fab 4c1
Length = 222
Score = 70.1 bits (170), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 43/136 (31%), Positives = 72/136 (52%), Gaps = 4/136 (2%)
Query: 98 DVPTSIDWREKGAVTHIKDQGQTGSSWAFSAVAAVEGITQITSRKLIELSGQQLVDCSTD 157
+ P ID R+ VT I+ QG GS WAFS VAA E + ++L+ Q+LVDC++
Sbjct: 9 NAPAEIDLRQMRTVTPIRMQGGCGSCWAFSGVAATESAYLAYRNQSLDLAEQELVDCASQ 68
Query: 158 NHGCSGGLMDKAFEYIIENKGLASEADYPYRREQGTCDKQKEKAVAATISKYEDLPQGDE 217
HGC G + + EY I++ G+ E+ Y Y + +C ++ A IS Y + +
Sbjct: 69 -HGCHGDTIPRGIEY-IQHNGVVQESYYRYVAREQSC--RRPNAQRFGISNYCQIYPPNV 124
Query: 218 QALLQAVSKQPVSVCV 233
+ +A+++ ++ V
Sbjct: 125 NKIREALAQTHSAIAV 140
>pdb|3PDF|A Chain A, Discovery Of Novel Cyanamide-Based Inhibitors Of Cathepsin
C
Length = 441
Score = 61.2 bits (147), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 50/166 (30%), Positives = 75/166 (45%), Gaps = 21/166 (12%)
Query: 94 QNVTDVPTSIDWREKGA---VTHIKDQGQTGSSWAFSAVAAVEGITQITSR--KLIELSG 148
Q + +PTS DWR V+ +++Q GS ++F+++ +E +I + + LS
Sbjct: 202 QKILFLPTSWDWRNVHGINFVSPVRNQASCGSCYSFASMGMLEARIRILTNNSQTPILSP 261
Query: 149 QQLVDCSTDNHGCSGGLMDKAFEYIIENK-----GLASEADYPYRREQGTCDKQKEKAVA 203
Q++V CS GC GG F Y+I K GL EA +PY C K KE
Sbjct: 262 QEVVSCSQYAQGCEGG-----FPYLIAGKYAQDFGLVEEACFPYTGTDSPC-KMKEDCFR 315
Query: 204 ATISKYE---DLPQGDEQAL--LQAVSKQPVSVCVEASGRAFHFYK 244
S+Y G +AL L+ V P++V E H+ K
Sbjct: 316 YYSSEYHYVGGFYGGCNEALMKLELVHHGPMAVAFEVYDDFLHYKK 361
>pdb|1K3B|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase I
(Cathepsin C): Exclusion Domain Added To An
Endopeptidase Framework Creates The Machine For
Activation Of Granular Serine Proteases
pdb|2DJG|B Chain B, Re-determination Of The Native Structure Of Human
Dipeptidyl Peptidase I (cathepsin C)
pdb|2DJF|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase I
(Cathepsin C) In Complex With The Inhibitor Gly-Phe-Chn2
Length = 164
Score = 59.7 bits (143), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 51/163 (31%), Positives = 74/163 (45%), Gaps = 22/163 (13%)
Query: 99 VPTSIDWREKGA---VTHIKDQGQTGSSWAFSAVAAVEGITQITSR--KLIELSGQQLVD 153
+PTS DWR V+ +++Q GS ++F+++ +E +I + + LS Q++V
Sbjct: 1 LPTSWDWRNVHGINFVSPVRNQASCGSCYSFASMGMLEARIRILTNNSQTPILSPQEVVS 60
Query: 154 CSTDNHGCSGGLMDKAFEYIIENK-----GLASEADYPYRREQGTCDKQKEKAVAATISK 208
CS GC GG F Y+I K GL EA +PY C K KE S+
Sbjct: 61 CSQYAQGCEGG-----FPYLIAGKYAQDFGLVEEACFPYTGTDSPC-KMKEDCFRYYSSE 114
Query: 209 YE---DLPQGDEQAL--LQAVSKQPVSVCVEASGRAFHFYKSG 246
Y G +AL L+ V P++V E H YK G
Sbjct: 115 YHYVGGFYGGCNEALMKLELVHHGPMAVAFEVYDDFLH-YKKG 156
>pdb|1MIR|A Chain A, Rat Procathepsin B
pdb|1MIR|B Chain B, Rat Procathepsin B
Length = 322
Score = 52.0 bits (123), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 60/137 (43%), Gaps = 16/137 (11%)
Query: 64 NEEFRASYTGYNTPVPSLSRQSS-------LPSNFKYQNVTDVPTSIDWREKGA----VT 112
N ++A YN + L + LP + ++P S D RE+ + +
Sbjct: 21 NTTWQAGRNFYNVDISYLKKLCGTVLGGPKLPERVGFSEDINLPESFDAREQWSNCPTIA 80
Query: 113 HIKDQGQTGSSWAFSAVAAVEGITQI--TSRKLIELSGQQLVDCST--DNHGCSGGLMDK 168
I+DQG GSSWAF AV A+ I R +E+S + L+ C GC+GG
Sbjct: 81 QIRDQGSCGSSWAFGAVEAMSDRICIHTNGRVNVEVSAEDLLTCCGIQCGDGCNGGYPSG 140
Query: 169 AFEYIIENKGLASEADY 185
A+ + KGL S Y
Sbjct: 141 AWNFWTR-KGLVSGGVY 156
>pdb|3QSD|A Chain A, Structure Of Cathepsin B1 From Schistosoma Mansoni In
Complex With Ca074 Inhibitor
pdb|3S3Q|A Chain A, Structure Of Cathepsin B1 From Schistosoma Mansoni In
Complex With K11017 Inhibitor
pdb|3S3R|A Chain A, Structure Of Cathepsin B1 From Schistosoma Mansoni In
Complex With K11777 Inhibitor
pdb|3S3R|B Chain B, Structure Of Cathepsin B1 From Schistosoma Mansoni In
Complex With K11777 Inhibitor
pdb|3S3R|C Chain C, Structure Of Cathepsin B1 From Schistosoma Mansoni In
Complex With K11777 Inhibitor
Length = 254
Score = 51.6 bits (122), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 48/86 (55%), Gaps = 7/86 (8%)
Query: 97 TDVPTSID----WREKGAVTHIKDQGQTGSSWAFSAVAAVEGITQITS--RKLIELSGQQ 150
++P+S D W ++ I+DQ + GS WAF AV A+ + I S ++ +ELS
Sbjct: 1 VEIPSSFDSRKKWPRCKSIATIRDQSRCGSCWAFGAVEAMSDRSCIQSGGKQNVELSAVD 60
Query: 151 LVDCS-TDNHGCSGGLMDKAFEYIIE 175
L+ C + GC GG++ A++Y ++
Sbjct: 61 LLSCCESCGLGCEGGILGPAWDYWVK 86
>pdb|1JQP|A Chain A, Dipeptidyl Peptidase I (Cathepsin C), A Tetrameric
Cysteine Protease Of The Papain Family
Length = 438
Score = 51.6 bits (122), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 76/165 (46%), Gaps = 21/165 (12%)
Query: 94 QNVTDVPTSIDWRE-KGA--VTHIKDQGQTGSSWAFSAVAAVEGITQITSR--KLIELSG 148
Q + +P S DWR +G V+ +++Q GS ++F+++ +E +I + + LS
Sbjct: 201 QQILSLPESWDWRNVRGINFVSPVRNQESCGSCYSFASLGMLEARIRILTNNSQTPILSP 260
Query: 149 QQLVDCSTDNHGCSGGLMDKAFEYIIENK-----GLASEADYPYRREQGTCDKQKEKAVA 203
Q++V CS GC GG F Y+I K G+ E +PY C K KE +
Sbjct: 261 QEVVSCSPYAQGCDGG-----FPYLIAGKYAQDFGVVEENCFPYTATDAPC-KPKENCLR 314
Query: 204 ATISKYEDLPQGD---EQAL--LQAVSKQPVSVCVEASGRAFHFY 243
S+Y + +AL L+ V P++V E H++
Sbjct: 315 YYSSEYYYVGGFYGGCNEALMKLELVKHGPMAVAFEVHDDFLHYH 359
>pdb|1PBH|A Chain A, Crystal Structure Of Human Recombinant Procathepsin B At
3.2 Angstrom Resolution
pdb|2PBH|A Chain A, Crystal Structure Of Human Procathepsin B At 3.3 Angstrom
Resolution
pdb|3PBH|A Chain A, Refined Crystal Structure Of Human Procathepsin B At 2.5
Angstrom Resolution
Length = 317
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 58/137 (42%), Gaps = 16/137 (11%)
Query: 64 NEEFRASYTGYNTPVPSLSRQSSL-------PSNFKYQNVTDVPTSID----WREKGAVT 112
N ++A + YN + L R P + +P S D W + +
Sbjct: 22 NTTWQAGHNFYNVDMSYLKRLCGTFLGGPKPPQRVMFTEDLKLPASFDAREQWPQCPTIK 81
Query: 113 HIKDQGQTGSSWAFSAVAAVEGITQI--TSRKLIELSGQQLVDC--STDNHGCSGGLMDK 168
I+DQG GS WAF AV A+ I + +E+S + L+ C S GC+GG +
Sbjct: 82 EIRDQGSCGSCWAFGAVEAISDRICIHTNAHVSVEVSAEDLLTCCGSMCGDGCNGGYPAE 141
Query: 169 AFEYIIENKGLASEADY 185
A+ + KGL S Y
Sbjct: 142 AWNFWTR-KGLVSGGLY 157
>pdb|3F75|P Chain P, Activated Toxoplasma Gondii Cathepsin L (Tgcpl) In
Complex With Its Propeptide
Length = 106
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 15 AQHGRTYKDELEKAMRLNIFKQNLEYIGKANKEGNRTYKLGTNEFSDLTNEEFRASYTGY 74
A + ++Y E EK R IFK NL YI N++G +Y L N F DL+ +EFR Y G+
Sbjct: 30 AMYAKSYATEEEKQRRYAIFKNNLVYIHTHNQQG-YSYSLKMNHFGDLSRDEFRRKYLGF 88
>pdb|3CBJ|A Chain A, Chagasin-cathepsin B Complex
pdb|3CBK|A Chain A, Chagasin-Cathepsin B
Length = 266
Score = 47.8 bits (112), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 47/95 (49%), Gaps = 9/95 (9%)
Query: 99 VPTSID----WREKGAVTHIKDQGQTGSSWAFSAVAAVEGITQI--TSRKLIELSGQQLV 152
+P S D W + + I+DQG GS+WAF AV A+ I + +E+S + L+
Sbjct: 7 LPASFDAREQWPQCPTIKEIRDQGSCGSAWAFGAVEAISDRICIHTNAHVSVEVSAEDLL 66
Query: 153 DC--STDNHGCSGGLMDKAFEYIIENKGLASEADY 185
C S GC+GG +A+ + KGL S Y
Sbjct: 67 TCCGSMCGDGCNGGYPAEAWNFWTR-KGLVSGGLY 100
>pdb|3AI8|B Chain B, Cathepsin B In Complex With The Nitroxoline
pdb|3AI8|A Chain A, Cathepsin B In Complex With The Nitroxoline
Length = 256
Score = 47.4 bits (111), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 46/95 (48%), Gaps = 9/95 (9%)
Query: 99 VPTSID----WREKGAVTHIKDQGQTGSSWAFSAVAAVEGITQI--TSRKLIELSGQQLV 152
+P S D W + + I+DQG GS WAF AV A+ I + +E+S + L+
Sbjct: 3 LPASFDAREQWPQCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHTNAHVSVEVSAEDLL 62
Query: 153 DC--STDNHGCSGGLMDKAFEYIIENKGLASEADY 185
C S GC+GG +A+ + KGL S Y
Sbjct: 63 TCCGSMCGDGCNGGYPAEAWNFWTR-KGLVSGGLY 96
>pdb|3K9M|A Chain A, Cathepsin B In Complex With Stefin A
pdb|3K9M|B Chain B, Cathepsin B In Complex With Stefin A
Length = 254
Score = 47.4 bits (111), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 45/95 (47%), Gaps = 9/95 (9%)
Query: 99 VPTSID----WREKGAVTHIKDQGQTGSSWAFSAVAAVEG--ITQITSRKLIELSGQQLV 152
+P S D W + + I+DQG GS WAF AV A+ + +E+S + L+
Sbjct: 1 LPASFDAREQWPQCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHTNAHVSVEVSAEDLL 60
Query: 153 DC--STDNHGCSGGLMDKAFEYIIENKGLASEADY 185
C S GC+GG +A+ + KGL S Y
Sbjct: 61 TCCGSMCGDGCNGGYPAEAWNFWTR-KGLVSGGLY 94
>pdb|1GMY|A Chain A, Cathepsin B Complexed With Dipeptidyl Nitrile Inhibitor
pdb|1GMY|B Chain B, Cathepsin B Complexed With Dipeptidyl Nitrile Inhibitor
pdb|1GMY|C Chain C, Cathepsin B Complexed With Dipeptidyl Nitrile Inhibitor
Length = 261
Score = 47.4 bits (111), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 45/95 (47%), Gaps = 9/95 (9%)
Query: 99 VPTSID----WREKGAVTHIKDQGQTGSSWAFSAVAAVEG--ITQITSRKLIELSGQQLV 152
+P S D W + + I+DQG GS WAF AV A+ + +E+S + L+
Sbjct: 2 LPASFDAREQWPQCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHTNAHVSVEVSAEDLL 61
Query: 153 DC--STDNHGCSGGLMDKAFEYIIENKGLASEADY 185
C S GC+GG +A+ + KGL S Y
Sbjct: 62 TCCGSMCGDGCNGGYPAEAWNFWTR-KGLVSGGLY 95
>pdb|1CPJ|A Chain A, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B-Inhibitor Complex: Implications For
Structure- Based Inhibitor Design
pdb|1CPJ|B Chain B, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B-Inhibitor Complex: Implications For
Structure- Based Inhibitor Design
pdb|1THE|A Chain A, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B- Inhibitor Complex: Implications For
Structure-Based Inhibitor Design
pdb|1THE|B Chain B, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B- Inhibitor Complex: Implications For
Structure-Based Inhibitor Design
Length = 260
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 47/96 (48%), Gaps = 9/96 (9%)
Query: 98 DVPTSIDWREKGA----VTHIKDQGQTGSSWAFSAVAAVEGITQI--TSRKLIELSGQQL 151
++P S D RE+ + + I+DQG GS WAF AV A+ I R +E+S + L
Sbjct: 6 NLPESFDAREQWSNCPTIAQIRDQGSCGSCWAFGAVEAMSDRICIHTNGRVNVEVSAEDL 65
Query: 152 VDCST--DNHGCSGGLMDKAFEYIIENKGLASEADY 185
+ C GC+GG A+ + KGL S Y
Sbjct: 66 LTCCGIQCGDGCNGGYPSGAWNFWTR-KGLVSGGVY 100
>pdb|4HWY|A Chain A, Trypanosoma Brucei Procathepsin B Solved From 40 Fs
Free-electron Laser Pulse Data By Serial Femtosecond
X-ray Crystallography
Length = 340
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 47/95 (49%), Gaps = 7/95 (7%)
Query: 99 VPTSID----WREKGAVTHIKDQGQTGSSWAFSAVAAV-EGITQITSRKLIELSGQQLVD 153
+P+S D W + I DQ GS WA +A +A+ + + + + +S L+
Sbjct: 94 LPSSFDSAEAWPNCPTIPQIADQSACGSCWAVAAASAMSDRFCTMGGVQDVHISAGDLLA 153
Query: 154 CSTD-NHGCSGGLMDKAFEYIIENKGLASEADYPY 187
C +D GC+GG D+A+ Y + GL S+ PY
Sbjct: 154 CCSDCGDGCNGGDPDRAWAY-FSSTGLVSDYCQPY 187
>pdb|3MOR|A Chain A, Crystal Structure Of Cathepsin B From Trypanosoma Brucei
pdb|3MOR|B Chain B, Crystal Structure Of Cathepsin B From Trypanosoma Brucei
Length = 317
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 47/95 (49%), Gaps = 7/95 (7%)
Query: 99 VPTSID----WREKGAVTHIKDQGQTGSSWAFSAVAAV-EGITQITSRKLIELSGQQLVD 153
+P+S D W + I DQ GS WA +A +A+ + + + + +S L+
Sbjct: 71 LPSSFDSAEAWPNCPTIPQIADQSACGSCWAVAAASAMSDRFCTMGGVQDVHISAGDLLA 130
Query: 154 CSTD-NHGCSGGLMDKAFEYIIENKGLASEADYPY 187
C +D GC+GG D+A+ Y + GL S+ PY
Sbjct: 131 CCSDCGDGCNGGDPDRAWAY-FSSTGLVSDYCQPY 164
>pdb|3HHI|A Chain A, Crystal Structure Of Cathepsin B From T. Brucei In Complex
With Ca074
pdb|3HHI|B Chain B, Crystal Structure Of Cathepsin B From T. Brucei In Complex
With Ca074
Length = 325
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 47/95 (49%), Gaps = 7/95 (7%)
Query: 99 VPTSID----WREKGAVTHIKDQGQTGSSWAFSAVAAV-EGITQITSRKLIELSGQQLVD 153
+P+S D W + I DQ GS WA +A +A+ + + + + +S L+
Sbjct: 72 LPSSFDSAEAWPNCPTIPQIADQSACGSCWAVAAASAMSDRFCTMGGVQDVHISAGDLLA 131
Query: 154 CSTD-NHGCSGGLMDKAFEYIIENKGLASEADYPY 187
C +D GC+GG D+A+ Y + GL S+ PY
Sbjct: 132 CCSDCGDGCNGGDPDRAWAY-FSSTGLVSDYCQPY 165
>pdb|1CTE|A Chain A, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B-Inhibitor Complex: Implications For
Structure- Based Inhibitor Design
pdb|1CTE|B Chain B, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B-Inhibitor Complex: Implications For
Structure- Based Inhibitor Design
Length = 254
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 46/95 (48%), Gaps = 9/95 (9%)
Query: 99 VPTSIDWREKGA----VTHIKDQGQTGSSWAFSAVAAVEGITQI--TSRKLIELSGQQLV 152
+P S D RE+ + + I+DQG GS WAF AV A+ I R +E+S + L+
Sbjct: 1 LPESFDAREQWSNCPTIAQIRDQGSCGSCWAFGAVEAMSDRICIHTNGRVNVEVSAEDLL 60
Query: 153 DCST--DNHGCSGGLMDKAFEYIIENKGLASEADY 185
C GC+GG A+ + KGL S Y
Sbjct: 61 TCCGIQCGDGCNGGYPSGAWNFWTR-KGLVSGGVY 94
>pdb|2WBF|X Chain X, Crystal Structure Analysis Of Sera5e From Plasmodium
Falciparum With Loop 690-700 Ordered
Length = 265
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 39/78 (50%), Gaps = 3/78 (3%)
Query: 114 IKDQGQTGSSWAFSAVAAVEGITQITSRKLIELSGQQLVDCSTDNHG--CSGGLMDKAFE 171
++DQG +SW F++ +E I + + ++S + +C H C G F
Sbjct: 25 VEDQGNCDTSWIFASKYHLETIRCMKGYEPTKISALYVANCYKGEHKDRCDEGSSPMEFL 84
Query: 172 YIIENKG-LASEADYPYR 188
IIE+ G L +E++YPY
Sbjct: 85 QIIEDYGFLPAESNYPYN 102
>pdb|3CH2|X Chain X, Crystal Structure Analysis Of Sera5e From Plasmodium
Falciparum
pdb|3CH3|X Chain X, Crystal Structure Analysis Of Sera5e From Plasmodium
Falciparum
Length = 265
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 39/78 (50%), Gaps = 3/78 (3%)
Query: 114 IKDQGQTGSSWAFSAVAAVEGITQITSRKLIELSGQQLVDCSTDNHG--CSGGLMDKAFE 171
++DQG +SW F++ +E I + + ++S + +C H C G F
Sbjct: 24 VEDQGNCDTSWIFASKYHLETIRCMKGYEPTKISALYVANCYKGEHKDRCDEGSSPMEFL 83
Query: 172 YIIENKG-LASEADYPYR 188
IIE+ G L +E++YPY
Sbjct: 84 QIIEDYGFLPAESNYPYN 101
>pdb|1DEU|A Chain A, Crystal Structure Of Human Procathepsin X: A Cysteine
Protease With The Proregion Covalently Linked To The
Active Site Cysteine
pdb|1DEU|B Chain B, Crystal Structure Of Human Procathepsin X: A Cysteine
Protease With The Proregion Covalently Linked To The
Active Site Cysteine
Length = 277
Score = 36.6 bits (83), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 45/184 (24%), Positives = 76/184 (41%), Gaps = 30/184 (16%)
Query: 84 QSSLPSNFKYQNVTDVPTSIDWREKGAVT--------HIKDQGQTGSSWAFSAVAAVEGI 135
+++ P +Y + D+P S DWR V HI GS WA ++ +A+
Sbjct: 21 RTTYPRPHEYLSPADLPKSWDWRNVDGVNYASITRNQHIPQ--YCGSCWAHASTSAMADR 78
Query: 136 TQITSRKLIE---LSGQQLVDCSTDNHG-CSGG----LMDKAFEYIIE----NKGLASEA 183
I + LS Q ++DC N G C GG + D A ++ I N A +
Sbjct: 79 INIKRKGAWPSTLLSVQNVIDCG--NAGSCEGGNDLSVWDYAHQHGIPDETCNNYQAKDQ 136
Query: 184 DYPYRREQGTCDKQKE-----KAVAATISKYEDLPQGDEQALLQAVSKQPVSVCVEASGR 238
+ + GTC++ KE + Y L G E+ + + + P+S + A+ R
Sbjct: 137 ECDKFNQCGTCNEFKECHAIRNYTLWRVGDYGSL-SGREKMMAEIYANGPISCGIMATER 195
Query: 239 AFHF 242
++
Sbjct: 196 LANY 199
>pdb|1ITO|A Chain A, Crystal Structure Analysis Of Bovine Spleen Cathepsin B-
E64c Complex
pdb|2DC6|A Chain A, X-ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-ca073 Complex
pdb|2DC7|A Chain A, X-ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-ca042 Complex
pdb|2DC8|A Chain A, X-ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-ca059 Complex
pdb|2DC9|A Chain A, X-Ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-Ca074me Complex
pdb|2DCA|A Chain A, X-ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-ca075 Complex
pdb|2DCB|A Chain A, X-Ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-Ca076 Complex
pdb|2DCC|A Chain A, X-Ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-Ca077 Complex
pdb|2DCD|A Chain A, X-Ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-Ca078 Complex
Length = 256
Score = 36.6 bits (83), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 32/60 (53%), Gaps = 6/60 (10%)
Query: 99 VPTSIDWREKG----AVTHIKDQGQTGSSWAFSAVAAVEGITQITS--RKLIELSGQQLV 152
+P S D RE+ + I+DQG GS WAF AV A+ I S R +E+S + ++
Sbjct: 1 LPESFDAREQWPNCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHSNGRVNVEVSAEDML 60
>pdb|1QDQ|A Chain A, X-Ray Crystal Structure Of Bovine Cathepsin B-Ca074
Complex
Length = 253
Score = 36.6 bits (83), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 32/60 (53%), Gaps = 6/60 (10%)
Query: 99 VPTSIDWREKG----AVTHIKDQGQTGSSWAFSAVAAVEGITQITS--RKLIELSGQQLV 152
+P S D RE+ + I+DQG GS WAF AV A+ I S R +E+S + ++
Sbjct: 1 LPESFDAREQWPNCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHSNGRVNVEVSAEDML 60
>pdb|1HUC|A Chain A, The Refined 2.15 Angstroms X-Ray Crystal Structure Of
Human Liver Cathepsin B: The Structural Basis For Its
Specificity
pdb|1HUC|C Chain C, The Refined 2.15 Angstroms X-Ray Crystal Structure Of
Human Liver Cathepsin B: The Structural Basis For Its
Specificity
pdb|1CSB|A Chain A, Crystal Structure Of Cathepsin B Inhibited With Ca030 At
2.1 Angstroms Resolution: A Basis For The Design Of
Specific Epoxysuccinyl Inhibitors
pdb|1CSB|D Chain D, Crystal Structure Of Cathepsin B Inhibited With Ca030 At
2.1 Angstroms Resolution: A Basis For The Design Of
Specific Epoxysuccinyl Inhibitors
pdb|2IPP|A Chain A, Crystal Structure Of The Tetragonal Form Of Human Liver
Cathepsin B
Length = 47
Score = 35.8 bits (81), Expect = 0.023, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 22/38 (57%), Gaps = 4/38 (10%)
Query: 99 VPTSIDWREK----GAVTHIKDQGQTGSSWAFSAVAAV 132
+P S D RE+ + I+DQG GS WAF AV A+
Sbjct: 1 LPASFDAREQWPQCPTIKEIRDQGSCGSCWAFGAVEAI 38
>pdb|1SP4|A Chain A, Crystal Structure Of Ns-134 In Complex With Bovine
Cathepsin B: A Two Headed Epoxysuccinyl Inhibitor
Extends Along The Whole Active Site Cleft
Length = 48
Score = 35.4 bits (80), Expect = 0.031, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 22/38 (57%), Gaps = 4/38 (10%)
Query: 99 VPTSIDWREK----GAVTHIKDQGQTGSSWAFSAVAAV 132
+P S D RE+ + I+DQG GS WAF AV A+
Sbjct: 1 LPESFDAREQWPNCPTIKEIRDQGSCGSCWAFGAVEAI 38
>pdb|2L95|A Chain A, Solution Structure Of Cytotoxic T-Lymphocyte
Antigent-2(Ctla Protein), Crammer At Ph 6.0
Length = 80
Score = 33.1 bits (74), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 40/73 (54%), Gaps = 8/73 (10%)
Query: 11 EQWM---AQHGRTYKDELEKAMRLNIFKQNLEYIGKANKE---GNRTYKLGTNEFSDLTN 64
E+W+ ++ + Y+ E E MR I+ ++ I + N++ G T+K+G N +DLT
Sbjct: 8 EEWVEYKSKFDKNYEAE-EDLMRRRIYAESKARIEEHNRKFEKGEVTWKMGINHLADLTP 66
Query: 65 EEFRASYTGYNTP 77
EEF A +G P
Sbjct: 67 EEF-AQRSGKKVP 78
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.312 0.128 0.370
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,540,089
Number of Sequences: 62578
Number of extensions: 308965
Number of successful extensions: 830
Number of sequences better than 100.0: 109
Number of HSP's better than 100.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 583
Number of HSP's gapped (non-prelim): 109
length of query: 246
length of database: 14,973,337
effective HSP length: 96
effective length of query: 150
effective length of database: 8,965,849
effective search space: 1344877350
effective search space used: 1344877350
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 50 (23.9 bits)