Query 048025
Match_columns 246
No_of_seqs 161 out of 1410
Neff 8.5
Searched_HMMs 46136
Date Fri Mar 29 05:34:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048025.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048025hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1542 Cysteine proteinase Ca 100.0 3.6E-64 7.7E-69 426.3 20.3 235 5-246 66-302 (372)
2 PTZ00203 cathepsin L protease; 100.0 3.3E-60 7.1E-65 417.8 25.8 238 3-246 31-276 (348)
3 PTZ00021 falcipain-2; Provisio 100.0 3.2E-59 6.8E-64 423.3 24.8 241 1-246 160-410 (489)
4 PTZ00200 cysteine proteinase; 100.0 1.4E-56 3E-61 404.7 24.6 237 2-246 118-376 (448)
5 KOG1543 Cysteine proteinase Ca 100.0 9.1E-50 2E-54 349.1 21.3 223 14-246 30-257 (325)
6 cd02621 Peptidase_C1A_Cathepsi 100.0 3.4E-39 7.4E-44 273.3 14.0 146 99-246 1-162 (243)
7 cd02698 Peptidase_C1A_Cathepsi 100.0 7.3E-38 1.6E-42 264.4 14.6 143 99-246 1-167 (239)
8 cd02248 Peptidase_C1A Peptidas 100.0 1E-37 2.2E-42 258.3 15.2 144 100-246 1-146 (210)
9 cd02620 Peptidase_C1A_Cathepsi 100.0 2.9E-37 6.2E-42 260.3 13.5 144 100-246 1-173 (236)
10 PTZ00364 dipeptidyl-peptidase 100.0 4.4E-37 9.6E-42 282.0 15.2 147 96-246 202-372 (548)
11 PTZ00049 cathepsin C-like prot 100.0 7.6E-37 1.7E-41 283.5 15.5 149 96-246 378-586 (693)
12 PF00112 Peptidase_C1: Papain 100.0 7.8E-35 1.7E-39 241.8 11.5 146 99-246 1-153 (219)
13 cd02619 Peptidase_C1 C1 Peptid 100.0 1.4E-31 3.1E-36 222.6 13.9 142 102-246 1-154 (223)
14 KOG1544 Predicted cysteine pro 100.0 1.1E-32 2.3E-37 232.2 1.8 202 39-246 151-382 (470)
15 smart00645 Pept_C1 Papain fami 100.0 1.2E-30 2.6E-35 210.2 10.0 91 99-189 1-92 (174)
16 PTZ00462 Serine-repeat antigen 99.9 3.4E-27 7.4E-32 225.3 13.5 134 111-246 544-709 (1004)
17 PF08246 Inhibitor_I29: Cathep 99.8 4.2E-18 9.1E-23 112.4 7.8 58 10-67 1-58 (58)
18 smart00848 Inhibitor_I29 Cathe 99.6 8.8E-16 1.9E-20 100.8 5.3 57 10-66 1-57 (57)
19 COG4870 Cysteine protease [Pos 99.3 4.5E-13 9.8E-18 116.1 2.0 135 98-236 98-246 (372)
20 cd00585 Peptidase_C1B Peptidas 98.2 2.6E-06 5.7E-11 77.6 5.3 76 112-188 55-159 (437)
21 PF03051 Peptidase_C1_2: Pepti 98.0 1.4E-05 3E-10 73.0 7.0 76 112-188 56-160 (438)
22 PF08127 Propeptide_C1: Peptid 97.4 0.00019 4.2E-09 43.3 3.4 36 38-76 3-38 (41)
23 COG3579 PepC Aminopeptidase C 94.9 0.053 1.1E-06 47.5 5.2 75 113-188 59-162 (444)
24 KOG4128 Bleomycin hydrolases a 92.1 0.22 4.7E-06 43.7 4.3 77 111-188 62-169 (457)
25 cd00585 Peptidase_C1B Peptidas 66.5 9.4 0.0002 35.3 4.5 37 205-246 285-326 (437)
26 KOG2735 Phosphatidylserine syn 39.7 20 0.00044 32.4 2.0 21 122-142 374-394 (466)
27 PF05391 Lsm_interact: Lsm int 38.2 26 0.00057 17.7 1.4 12 61-72 9-20 (21)
28 PF13529 Peptidase_C39_2: Pept 36.2 1.7E+02 0.0036 21.2 6.9 20 215-234 87-107 (144)
29 PF04214 DUF411: Protein of un 33.2 1.5E+02 0.0033 19.9 5.4 36 201-236 26-61 (70)
30 COG4871 Uncharacterized protei 30.2 29 0.00062 27.5 1.2 16 113-128 135-152 (193)
31 PHA02094 hypothetical protein 27.5 89 0.0019 20.8 3.0 40 26-66 38-78 (81)
32 KOG4702 Uncharacterized conser 20.4 2.5E+02 0.0055 18.9 4.1 31 8-39 29-59 (77)
No 1
>KOG1542 consensus Cysteine proteinase Cathepsin F [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.6e-64 Score=426.32 Aligned_cols=235 Identities=37% Similarity=0.672 Sum_probs=208.9
Q ss_pred HHHHHHHHHHHHhCCccCCHHHHHHHHHHHHHHHHHHHHHhhCCCCceEEecccCCCCCHHHHHHHhcCCCCCCCCCCcC
Q 048025 5 SIVAKHEQWMAQHGRTYKDELEKAMRLNIFKQNLEYIGKANKEGNRTYKLGTNEFSDLTNEEFRASYTGYNTPVPSLSRQ 84 (246)
Q Consensus 5 ~~~~~f~~f~~~~~k~Y~~~~e~~~r~~~F~~n~~~I~~~N~~~~~~~~~g~n~fsD~t~~E~~~~~~~~~~~~~~~~~~ 84 (246)
.+.+.|..|+.+|+|.|.+.+|...|+.+|++|+..+++++.+...|...|+|+|||||+|||++++++...........
T Consensus 66 ~~~~~F~~F~~kf~r~Y~s~eE~~~Rl~iF~~N~~~a~~~q~~d~gsA~yGvtqFSDlT~eEFkk~~l~~~~~~~~~~~~ 145 (372)
T KOG1542|consen 66 GLEDSFKLFTIKFGRSYASREEHAHRLSIFKHNLLRAERLQENDPGSAEYGVTQFSDLTEEEFKKIYLGVKRRGSKLPGD 145 (372)
T ss_pred chHHHHHHHHHhcCcccCcHHHHHHHHHHHHHHHHHHHHhhhcCccccccCccchhhcCHHHHHHHhhccccccccCccc
Confidence 45789999999999999999999999999999999999999876558999999999999999999988766531111111
Q ss_pred CCCCCCcccCCCCCCCCceecccCCCcccccCcCCCcchHHHHHHHHHHHHHHHhcCCCccCChHHHhhcCCCCCCCCCC
Q 048025 85 SSLPSNFKYQNVTDVPTSIDWREKGAVTHIKDQGQTGSSWAFSAVAAVEGITQITSRKLIELSGQQLVDCSTDNHGCSGG 164 (246)
Q Consensus 85 ~~~~~~~~~~~~~~lP~~~Dwr~~g~v~~v~~Qg~CGsCwAfa~~~~le~~~~i~~~~~~~lS~q~l~dC~~~~~gC~GG 164 (246)
....+......||.+||||++|.||||||||+||||||||+++++|+++.|++|++++||||+|+||+..++||+||
T Consensus 146 ---~~~~~~~~~~~lP~~fDWR~kgaVTpVKnQG~CGSCWAFS~tG~vEga~~i~~g~LvsLSEQeLvDCD~~d~gC~GG 222 (372)
T KOG1542|consen 146 ---AAEAPIEPGESLPESFDWRDKGAVTPVKNQGMCGSCWAFSTTGAVEGAWAIATGKLVSLSEQELVDCDSCDNGCNGG 222 (372)
T ss_pred ---cccCcCCCCCCCCcccchhccCCccccccCCcCcchhhhhhhhhhhhHHHhhcCcccccchhhhhcccCcCCcCCCC
Confidence 11111233458999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchHHHHHHHHhcCCCCCcCCCCCCCCc-cccccccCCceEEEeeeEECCcChHHHHHHHHh-cCCeEEEEEcCcccccc
Q 048025 165 LMDKAFEYIIENKGLASEADYPYRREQG-TCDKQKEKAVAATISKYEDLPQGDEQALLQAVS-KQPVSVCVEASGRAFHF 242 (246)
Q Consensus 165 ~~~~a~~y~~~~~Gi~~e~~yPy~~~~~-~C~~~~~~~~~~~i~~~~~~~~~~~~~i~~~l~-~GPv~v~i~v~~~~f~~ 242 (246)
.+..||+|+++.+||..|.+|||++..+ .|... .....+.|++|..++ .||++|...|. +|||+|+|++. .+|.
T Consensus 223 l~~nA~~~~~~~gGL~~E~dYPY~g~~~~~C~~~-~~~~~v~I~~f~~l~-~nE~~ia~wLv~~GPi~vgiNa~--~mQ~ 298 (372)
T KOG1542|consen 223 LMDNAFKYIKKAGGLEKEKDYPYTGKKGNQCHFD-KSKIVVSIKDFSMLS-NNEDQIAAWLVTFGPLSVGINAK--PMQF 298 (372)
T ss_pred ChhHHHHHHHHhCCccccccCCccccCCCccccc-hhhceEEEeccEecC-CCHHHHHHHHHhcCCeEEEEchH--HHHH
Confidence 9999999988888999999999999887 99998 577889999999999 49999999987 99999999976 7999
Q ss_pred cCCC
Q 048025 243 YKSG 246 (246)
Q Consensus 243 Y~sG 246 (246)
|++|
T Consensus 299 YrgG 302 (372)
T KOG1542|consen 299 YRGG 302 (372)
T ss_pred hccc
Confidence 9998
No 2
>PTZ00203 cathepsin L protease; Provisional
Probab=100.00 E-value=3.3e-60 Score=417.78 Aligned_cols=238 Identities=34% Similarity=0.616 Sum_probs=197.8
Q ss_pred chHHHHHHHHHHHHhCCccCCHHHHHHHHHHHHHHHHHHHHHhhCCCCceEEecccCCCCCHHHHHHHhcCCCCCCCCCC
Q 048025 3 EPSIVAKHEQWMAQHGRTYKDELEKAMRLNIFKQNLEYIGKANKEGNRTYKLGTNEFSDLTNEEFRASYTGYNTPVPSLS 82 (246)
Q Consensus 3 ~~~~~~~f~~f~~~~~k~Y~~~~e~~~r~~~F~~n~~~I~~~N~~~~~~~~~g~n~fsD~t~~E~~~~~~~~~~~~~~~~ 82 (246)
...++++|++|+++|+|.|.+.+|+..|+.+|++|++.|++||+++ .+|++|+|+|+|||.|||.+++++.........
T Consensus 31 ~~~~~~~f~~~~~~~~K~Y~~~~E~~~R~~iF~~N~~~I~~~N~~~-~~~~lg~N~FaDlT~eEf~~~~l~~~~~~~~~~ 109 (348)
T PTZ00203 31 GTPAAALFEEFKRTYQRAYGTLTEEQQRLANFERNLELMREHQARN-PHARFGITKFFDLSEAEFAARYLNGAAYFAAAK 109 (348)
T ss_pred ccHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHHHHHHHHhccC-CCeEEeccccccCCHHHHHHHhcCCCccccccc
Confidence 4568899999999999999998899999999999999999999864 699999999999999999987653211110000
Q ss_pred cCCCCCCCccc--CCCCCCCCceecccCCCcccccCcCCCcchHHHHHHHHHHHHHHHhcCCCccCChHHHhhcCCCCCC
Q 048025 83 RQSSLPSNFKY--QNVTDVPTSIDWREKGAVTHIKDQGQTGSSWAFSAVAAVEGITQITSRKLIELSGQQLVDCSTDNHG 160 (246)
Q Consensus 83 ~~~~~~~~~~~--~~~~~lP~~~Dwr~~g~v~~v~~Qg~CGsCwAfa~~~~le~~~~i~~~~~~~lS~q~l~dC~~~~~g 160 (246)
... ...+.. ..+.+||++||||+.|+|+||+|||.||||||||++++||++++|++++.+.||+|+|+||+..+.|
T Consensus 110 ~~~--~~~~~~~~~~~~~lP~~~DWR~~g~VtpVkdQg~CGSCWAfa~~~aiEs~~~i~~~~~~~LSeQqLvdC~~~~~G 187 (348)
T PTZ00203 110 QHA--GQHYRKARADLSAVPDAVDWREKGAVTPVKNQGACGSCWAFSAVGNIESQWAVAGHKLVRLSEQQLVSCDHVDNG 187 (348)
T ss_pred ccc--cccccccccccccCCCCCcCCcCCCCCCccccCCCccHHHHhhHHHHHHHHHHhcCCCccCCHHHHHhccCCCCC
Confidence 000 011111 1234799999999999999999999999999999999999999999999999999999999987889
Q ss_pred CCCCcchHHHHHHHHh--cCCCCCcCCCCCCCCc---cccccccCCceEEEeeeEECCcChHHHHHHHHh-cCCeEEEEE
Q 048025 161 CSGGLMDKAFEYIIEN--KGLASEADYPYRREQG---TCDKQKEKAVAATISKYEDLPQGDEQALLQAVS-KQPVSVCVE 234 (246)
Q Consensus 161 C~GG~~~~a~~y~~~~--~Gi~~e~~yPy~~~~~---~C~~~~~~~~~~~i~~~~~~~~~~~~~i~~~l~-~GPv~v~i~ 234 (246)
|+||++..||+|++++ +|+++|++|||.+.++ .|.........+.+++|..++. ++++|+++|+ +|||+|+|+
T Consensus 188 C~GG~~~~a~~yi~~~~~ggi~~e~~YPY~~~~~~~~~C~~~~~~~~~~~i~~~~~i~~-~e~~~~~~l~~~GPv~v~i~ 266 (348)
T PTZ00203 188 CGGGLMLQAFEWVLRNMNGTVFTEKSYPYVSGNGDVPECSNSSELAPGARIDGYVSMES-SERVMAAWLAKNGPISIAVD 266 (348)
T ss_pred CCCCCHHHHHHHHHHhcCCCCCccccCCCccCCCCCCcCCCCcccccceEecceeecCc-CHHHHHHHHHhCCCEEEEEE
Confidence 9999999999999864 5689999999998765 6864312224568899998874 8899999998 899999999
Q ss_pred cCcccccccCCC
Q 048025 235 ASGRAFHFYKSG 246 (246)
Q Consensus 235 v~~~~f~~Y~sG 246 (246)
+. +|++|++|
T Consensus 267 a~--~f~~Y~~G 276 (348)
T PTZ00203 267 AS--SFMSYHSG 276 (348)
T ss_pred hh--hhcCccCc
Confidence 85 89999998
No 3
>PTZ00021 falcipain-2; Provisional
Probab=100.00 E-value=3.2e-59 Score=423.33 Aligned_cols=241 Identities=37% Similarity=0.579 Sum_probs=201.7
Q ss_pred CCchHHHHHHHHHHHHhCCccCCHHHHHHHHHHHHHHHHHHHHHhhCCCCceEEecccCCCCCHHHHHHHhcCCCCCCCC
Q 048025 1 MHEPSIVAKHEQWMAQHGRTYKDELEKAMRLNIFKQNLEYIGKANKEGNRTYKLGTNEFSDLTNEEFRASYTGYNTPVPS 80 (246)
Q Consensus 1 ~~~~~~~~~f~~f~~~~~k~Y~~~~e~~~r~~~F~~n~~~I~~~N~~~~~~~~~g~n~fsD~t~~E~~~~~~~~~~~~~~ 80 (246)
|.+......|++|+.+|+|+|.+.+|+..|+.+|++|++.|++||++++.+|++|+|+|+|||.|||++++++.......
T Consensus 160 ~~n~e~~~~F~~wk~ky~K~Y~~~eE~~~R~~iF~~Nl~~Ie~hN~~~~~ty~lgiNqFsDlT~EEF~~~~l~~~~~~~~ 239 (489)
T PTZ00021 160 MTNLENVNSFYLFIKEHGKKYQTPDEMQQRYLSFVENLAKINAHNNKENVLYKKGMNRFGDLSFEEFKKKYLTLKSFDFK 239 (489)
T ss_pred ccChHHHHHHHHHHHHhCCcCCCHHHHHHHHHHHHHHHHHHHHhhccCCCCEEEeccccccCCHHHHHHHhccccccccc
Confidence 45566678899999999999999999999999999999999999987668999999999999999999887664321100
Q ss_pred C-CcCCCC----C---CCcccCCCCCCCCceecccCCCcccccCcCCCcchHHHHHHHHHHHHHHHhcCCCccCChHHHh
Q 048025 81 L-SRQSSL----P---SNFKYQNVTDVPTSIDWREKGAVTHIKDQGQTGSSWAFSAVAAVEGITQITSRKLIELSGQQLV 152 (246)
Q Consensus 81 ~-~~~~~~----~---~~~~~~~~~~lP~~~Dwr~~g~v~~v~~Qg~CGsCwAfa~~~~le~~~~i~~~~~~~lS~q~l~ 152 (246)
. ...... . ..+.+.....+|.+||||+.|.|+||+|||.||||||||++++||++++|++++.+.||+|+|+
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~P~s~DWR~~g~VtpVKdQG~CGSCWAFAa~~alEs~~~I~~g~~v~LSeQqLV 319 (489)
T PTZ00021 240 SNGKKSPRVINYDDVIKKYKPKDATFDHAKYDWRLHNGVTPVKDQKNCGSCWAFSTVGVVESQYAIRKNELVSLSEQELV 319 (489)
T ss_pred cccccccccccccccccccccccccCCccccccccCCCCCCcccccccccHHHHHHHHHHHHHHHHHcCCCcccCHHHHh
Confidence 0 000000 0 0011111112499999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCCCCCCcchHHHHHHHHhcCCCCCcCCCCCCC-CccccccccCCceEEEeeeEECCcChHHHHHHHHh-cCCeE
Q 048025 153 DCSTDNHGCSGGLMDKAFEYIIENKGLASEADYPYRRE-QGTCDKQKEKAVAATISKYEDLPQGDEQALLQAVS-KQPVS 230 (246)
Q Consensus 153 dC~~~~~gC~GG~~~~a~~y~~~~~Gi~~e~~yPy~~~-~~~C~~~~~~~~~~~i~~~~~~~~~~~~~i~~~l~-~GPv~ 230 (246)
||+..+.||.||++..||+|+.+++||++|++|||.+. ++.|... .....++|++|..++ +++|+++|+ +|||+
T Consensus 320 DCs~~n~GC~GG~~~~Af~yi~~~gGl~tE~~YPY~~~~~~~C~~~-~~~~~~~i~~y~~i~---~~~lk~al~~~GPVs 395 (489)
T PTZ00021 320 DCSFKNNGCYGGLIPNAFEDMIELGGLCSEDDYPYVSDTPELCNID-RCKEKYKIKSYVSIP---EDKFKEAIRFLGPIS 395 (489)
T ss_pred hhccCCCCCCCcchHhhhhhhhhccccCcccccCccCCCCCccccc-cccccceeeeEEEec---HHHHHHHHHhcCCeE
Confidence 99987899999999999999988779999999999987 4789765 344568899999886 578999998 89999
Q ss_pred EEEEcCcccccccCCC
Q 048025 231 VCVEASGRAFHFYKSG 246 (246)
Q Consensus 231 v~i~v~~~~f~~Y~sG 246 (246)
|+|.|. .+|++|++|
T Consensus 396 v~i~a~-~~f~~YkgG 410 (489)
T PTZ00021 396 VSIAVS-DDFAFYKGG 410 (489)
T ss_pred EEEEee-cccccCCCC
Confidence 999998 799999998
No 4
>PTZ00200 cysteine proteinase; Provisional
Probab=100.00 E-value=1.4e-56 Score=404.66 Aligned_cols=237 Identities=34% Similarity=0.552 Sum_probs=195.6
Q ss_pred CchHHHHHHHHHHHHhCCccCCHHHHHHHHHHHHHHHHHHHHHhhCCCCceEEecccCCCCCHHHHHHHhcCCCCCCCCC
Q 048025 2 HEPSIVAKHEQWMAQHGRTYKDELEKAMRLNIFKQNLEYIGKANKEGNRTYKLGTNEFSDLTNEEFRASYTGYNTPVPSL 81 (246)
Q Consensus 2 ~~~~~~~~f~~f~~~~~k~Y~~~~e~~~r~~~F~~n~~~I~~~N~~~~~~~~~g~n~fsD~t~~E~~~~~~~~~~~~~~~ 81 (246)
.|.++..+|++|+++|+|.|.+.+|+..|+.+|++|++.|++||.. .+|++|+|+|+|||+|||.+++++...+....
T Consensus 118 ~e~e~~~~F~~f~~ky~K~Y~~~~E~~~R~~iF~~Nl~~I~~hN~~--~~y~lgiN~FsDlT~eEF~~~~~~~~~~~~~~ 195 (448)
T PTZ00200 118 LEFEVYLEFEEFNKKYNRKHATHAERLNRFLTFRNNYLEVKSHKGD--EPYSKEINKFSDLTEEEFRKLFPVIKVPPKSN 195 (448)
T ss_pred chHHHHHHHHHHHHHhCCcCCCHHHHHHHHHHHHHHHHHHHHhcCc--CCeEEeccccccCCHHHHHHHhccCCCccccc
Confidence 3566788999999999999999999999999999999999999963 68999999999999999998876543221000
Q ss_pred ---Cc------CCCCC---CCccc-----CCC----CCCCCceecccCCCcccccCcC-CCcchHHHHHHHHHHHHHHHh
Q 048025 82 ---SR------QSSLP---SNFKY-----QNV----TDVPTSIDWREKGAVTHIKDQG-QTGSSWAFSAVAAVEGITQIT 139 (246)
Q Consensus 82 ---~~------~~~~~---~~~~~-----~~~----~~lP~~~Dwr~~g~v~~v~~Qg-~CGsCwAfa~~~~le~~~~i~ 139 (246)
.. ..... ..+.. ..+ ..+|++||||+.|.|+||+||| .||||||||+++++|++++|+
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~DWR~~g~vtpVkdQG~~CGSCWAFat~~aiEs~~~i~ 275 (448)
T PTZ00200 196 STSHNNDFKARHVSNPTYLKNLKKAKNTDEDVKDPSKITGEGLDWRRADAVTKVKDQGLNCGSCWAFSSVGSVESLYKIY 275 (448)
T ss_pred ccccccccccccccccccccccccccccccccccccccCCCCccCCCCCCCCCcccCCCccchHHHHhHHHHHHHHHHHh
Confidence 00 00000 00000 001 2369999999999999999999 999999999999999999999
Q ss_pred cCCCccCChHHHhhcCCCCCCCCCCcchHHHHHHHHhcCCCCCcCCCCCCCCccccccccCCceEEEeeeEECCcChHHH
Q 048025 140 SRKLIELSGQQLVDCSTDNHGCSGGLMDKAFEYIIENKGLASEADYPYRREQGTCDKQKEKAVAATISKYEDLPQGDEQA 219 (246)
Q Consensus 140 ~~~~~~lS~q~l~dC~~~~~gC~GG~~~~a~~y~~~~~Gi~~e~~yPy~~~~~~C~~~~~~~~~~~i~~~~~~~~~~~~~ 219 (246)
+++.+.||+|+|+||+..+.||+||++..||+|++++ ||++|++|||.+..+.|... . ...+.|.+|..+. +.+.
T Consensus 276 ~~~~~~LSeQqLvDC~~~~~GC~GG~~~~A~~yi~~~-Gi~~e~~YPY~~~~~~C~~~-~-~~~~~i~~y~~~~--~~~~ 350 (448)
T PTZ00200 276 RDKSVDLSEQELVNCDTKSQGCSGGYPDTALEYVKNK-GLSSSSDVPYLAKDGKCVVS-S-TKKVYIDSYLVAK--GKDV 350 (448)
T ss_pred cCCCeecCHHHHhhccCccCCCCCCcHHHHHHHHhhc-CccccccCCCCCCCCCCcCC-C-CCeeEecceEecC--HHHH
Confidence 9999999999999999778999999999999999887 99999999999999999865 2 3456788888765 4566
Q ss_pred HHHHHhcCCeEEEEEcCcccccccCCC
Q 048025 220 LLQAVSKQPVSVCVEASGRAFHFYKSG 246 (246)
Q Consensus 220 i~~~l~~GPv~v~i~v~~~~f~~Y~sG 246 (246)
|++++.+|||+|+|.|+ .+|++|++|
T Consensus 351 l~~~l~~GPV~v~i~~~-~~f~~Yk~G 376 (448)
T PTZ00200 351 LNKSLVISPTVVYIAVS-RELLKYKSG 376 (448)
T ss_pred HHHHHhcCCEEEEeecc-cccccCCCC
Confidence 66666699999999998 799999998
No 5
>KOG1543 consensus Cysteine proteinase Cathepsin L [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.1e-50 Score=349.09 Aligned_cols=223 Identities=39% Similarity=0.692 Sum_probs=193.0
Q ss_pred HHHhCCccCCHHHHHHHHHHHHHHHHHHHHHhhCCCCceEEecccCCCCCHHHHHHHhcCCCCCCCCCCcCCCCCCCccc
Q 048025 14 MAQHGRTYKDELEKAMRLNIFKQNLEYIGKANKEGNRTYKLGTNEFSDLTNEEFRASYTGYNTPVPSLSRQSSLPSNFKY 93 (246)
Q Consensus 14 ~~~~~k~Y~~~~e~~~r~~~F~~n~~~I~~~N~~~~~~~~~g~n~fsD~t~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (246)
+.+|.+.|.+..|...|+.+|.+|+..|+.||.....+|++|+|+|+|++.+|+.....+..++... . ......
T Consensus 30 ~~~~~~~y~~~~~~~~r~~~f~~n~~~~~~~n~~~~~~~~~g~n~~~d~~~ee~~~~~~~~~~~~~~--~----~~~~~~ 103 (325)
T KOG1543|consen 30 LVKFLKRYEDRVEKKARRAIFKENLQKIESHNLKYVLSFLMGVNQFADLTTEEFKRKKTGKKPPEIK--R----DKFTEK 103 (325)
T ss_pred hhhhccccccHHHHHHHHHHHHHHHHHHHhhhhhhceeeeeccccccccchHHHHHhhccccCcccc--c----cccccc
Confidence 4567777876778999999999999999999998668999999999999999999987765544321 0 111112
Q ss_pred CCCCCCCCceecccCC-CcccccCcCCCcchHHHHHHHHHHHHHHHhcC-CCccCChHHHhhcCCC-CCCCCCCcchHHH
Q 048025 94 QNVTDVPTSIDWREKG-AVTHIKDQGQTGSSWAFSAVAAVEGITQITSR-KLIELSGQQLVDCSTD-NHGCSGGLMDKAF 170 (246)
Q Consensus 94 ~~~~~lP~~~Dwr~~g-~v~~v~~Qg~CGsCwAfa~~~~le~~~~i~~~-~~~~lS~q~l~dC~~~-~~gC~GG~~~~a~ 170 (246)
....++|++||||++| +++||||||.||||||||++++||++++|+++ .+++||+|+|+||+.. +.||.||++..||
T Consensus 104 ~~~~~~p~s~DwR~~~~~~~~vkdQg~CgsCWAFaa~~aie~~~~i~~g~~l~sLSeq~lvdC~~~~~~GC~GG~~~~A~ 183 (325)
T KOG1543|consen 104 LDGDDLPDSFDWRDKGAVTPPVKDQGSCGSCWAFAATGALEDRYNIKTGGKLLSLSEQDLVDCCGECGDGCNGGEPKNAF 183 (325)
T ss_pred cchhhCCCCccccccCCcCCCcCCCCcCcchHHHHHHHHHHHHHHHHhCCccCccChhhhhhccCCCCCCcCCCCHHHHH
Confidence 2345899999999996 66679999999999999999999999999999 8999999999999996 8999999999999
Q ss_pred HHHHHhcCCCC-CcCCCCCCCCccccccccCCceEEEeeeEECCcChHHHHHHHHh-cCCeEEEEEcCcccccccCCC
Q 048025 171 EYIIENKGLAS-EADYPYRREQGTCDKQKEKAVAATISKYEDLPQGDEQALLQAVS-KQPVSVCVEASGRAFHFYKSG 246 (246)
Q Consensus 171 ~y~~~~~Gi~~-e~~yPy~~~~~~C~~~~~~~~~~~i~~~~~~~~~~~~~i~~~l~-~GPv~v~i~v~~~~f~~Y~sG 246 (246)
+|++++ |+++ +.+|||.+..+.|... .......+.++..++. +|++|+.+|+ +|||+|+|.++ ++|++|++|
T Consensus 184 ~yi~~~-G~~t~~~~Ypy~~~~~~C~~~-~~~~~~~~~~~~~~~~-~e~~i~~~v~~~GPv~v~~~a~-~~F~~Y~~G 257 (325)
T KOG1543|consen 184 KYIKKN-GGVTECENYPYIGKDGTCKSN-KKDKTVTIKGFYNVPA-NEEAIAEAVAKNGPVSVAIDAY-EDFSLYKGG 257 (325)
T ss_pred HHHHHh-CCCCCCcCCCCcCCCCCccCC-CccceeEeeeeeecCc-CHHHHHHHHHhcCCeEEEEeeh-hhhhhccCc
Confidence 999999 6666 9999999999999988 3367788889998885 5999999998 89999999999 699999998
No 6
>cd02621 Peptidase_C1A_CathepsinC Cathepsin C; also known as Dipeptidyl Peptidase I (DPPI), an atypical papain-like cysteine peptidase with chloride dependency and dipeptidyl aminopeptidase activity, resulting from its tetrameric structure which limits substrate access. Each subunit of the tetramer is composed of three peptides: the heavy and light chains, which together adopts the papain fold and forms the catalytic domain; and the residual propeptide region, which forms a beta barrel and points towards the substrate's N-terminus. The subunit composition is the result of the unique characteristic of procathepsin C maturation involving the cleavage of the catalytic domain and the non-autocatalytic excision of an activation peptide within its propeptide region. By removing N-terminal dipeptide extensions, cathepsin C activates granule serine peptidases (granzymes) involved in cell-mediated apoptosis, inflammation and tissue remodelling. Loss-of-function mutations in cathepsin C are assoc
Probab=100.00 E-value=3.4e-39 Score=273.27 Aligned_cols=146 Identities=29% Similarity=0.526 Sum_probs=127.8
Q ss_pred CCCceecccCC----CcccccCcCCCcchHHHHHHHHHHHHHHHhcCC------CccCChHHHhhcCCCCCCCCCCcchH
Q 048025 99 VPTSIDWREKG----AVTHIKDQGQTGSSWAFSAVAAVEGITQITSRK------LIELSGQQLVDCSTDNHGCSGGLMDK 168 (246)
Q Consensus 99 lP~~~Dwr~~g----~v~~v~~Qg~CGsCwAfa~~~~le~~~~i~~~~------~~~lS~q~l~dC~~~~~gC~GG~~~~ 168 (246)
||++||||+.+ +|+||+|||.||||||||++++||++++|++++ .+.||+|+|+||+..+.||+||++..
T Consensus 1 lP~~fDwr~~~~~~~~v~~v~dQg~CGsCwAfa~~~~ies~~~i~~~~~~~~~~~~~lS~q~l~dC~~~~~GC~GG~~~~ 80 (243)
T cd02621 1 LPKSFDWGDVNNGFNYVSPVRNQGGCGSCYAFASVYALEARIMIASNKTDPLGQQPILSPQHVLSCSQYSQGCDGGFPFL 80 (243)
T ss_pred CCCcccccccCCCCcccccCCCCCcCccHHHHHHHHHHHHHHHHHhCCCCccccCcccCHHHhhhhcCCCCCCCCCCHHH
Confidence 79999999998 999999999999999999999999999998876 68999999999997788999999999
Q ss_pred HHHHHHHhcCCCCCcCCCCCC-CCccccccccCCceEEEeeeEECC----cChHHHHHHHHh-cCCeEEEEEcCcccccc
Q 048025 169 AFEYIIENKGLASEADYPYRR-EQGTCDKQKEKAVAATISKYEDLP----QGDEQALLQAVS-KQPVSVCVEASGRAFHF 242 (246)
Q Consensus 169 a~~y~~~~~Gi~~e~~yPy~~-~~~~C~~~~~~~~~~~i~~~~~~~----~~~~~~i~~~l~-~GPv~v~i~v~~~~f~~ 242 (246)
|++|+.++ |+++|++|||.. ..+.|.........++++.|..+. ..++++||++|. +|||+|+|.+. ++|++
T Consensus 81 a~~~~~~~-Gi~~e~~yPY~~~~~~~C~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ik~~i~~~GPv~v~~~~~-~~F~~ 158 (243)
T cd02621 81 VGKFAEDF-GIVTEDYFPYTADDDRPCKASPSECRRYYFSDYNYVGGCYGCTNEDEMKWEIYRNGPIVVAFEVY-SDFDF 158 (243)
T ss_pred HHHHHHhc-CcCCCceeCCCCCCCCCCCCCccccccccccceeEcccccccCCHHHHHHHHHHcCCEEEEEEec-ccccc
Confidence 99999987 999999999998 778898652133445555555442 247899999998 89999999998 79999
Q ss_pred cCCC
Q 048025 243 YKSG 246 (246)
Q Consensus 243 Y~sG 246 (246)
|++|
T Consensus 159 Y~~G 162 (243)
T cd02621 159 YKEG 162 (243)
T ss_pred cCCe
Confidence 9987
No 7
>cd02698 Peptidase_C1A_CathepsinX Cathepsin X; the only papain-like lysosomal cysteine peptidase exhibiting carboxymonopeptidase activity. It can also act as a carboxydipeptidase, like cathepsin B, but has been shown to preferentially cleave substrates through a monopeptidyl carboxypeptidase pathway. The propeptide region of cathepsin X, the shortest among papain-like peptidases, is covalently attached to the active site cysteine in the inactive form of the enzyme. Little is known about the biological function of cathepsin X. Some studies point to a role in early tumorigenesis. A more recent study indicates that cathepsin X expression is restricted to immune cells suggesting a role in phagocytosis and the regulation of the immune response.
Probab=100.00 E-value=7.3e-38 Score=264.42 Aligned_cols=143 Identities=26% Similarity=0.532 Sum_probs=125.1
Q ss_pred CCCceecccCC---CcccccCcC---CCcchHHHHHHHHHHHHHHHhcC---CCccCChHHHhhcCCCCCCCCCCcchHH
Q 048025 99 VPTSIDWREKG---AVTHIKDQG---QTGSSWAFSAVAAVEGITQITSR---KLIELSGQQLVDCSTDNHGCSGGLMDKA 169 (246)
Q Consensus 99 lP~~~Dwr~~g---~v~~v~~Qg---~CGsCwAfa~~~~le~~~~i~~~---~~~~lS~q~l~dC~~~~~gC~GG~~~~a 169 (246)
||++||||+.+ +|+|||||| .||||||||++++||++++|+++ ..+.||+|+|+||+. +.||+||++..|
T Consensus 1 lP~~~Dwr~~~~~~~v~~vk~Qg~~~~CGsCwAfa~~~aies~~~i~~~~~~~~~~lS~Q~lldC~~-~~gC~GG~~~~a 79 (239)
T cd02698 1 LPKSWDWRNVNGVNYVSPTRNQHIPQYCGSCWAHGSTSALADRINIARKGAWPSVYLSVQVVIDCAG-GGSCHGGDPGGV 79 (239)
T ss_pred CCCCcccccCCCCcccCccccCCCCCCCCcchHHHhHHHHHHHHHHHHCCCCCCcccCHHHHHhCCC-CCCccCcCHHHH
Confidence 69999999987 899999998 89999999999999999999875 357899999999998 789999999999
Q ss_pred HHHHHHhcCCCCCcCCCCCCCCcccccccc--------------CCceEEEeeeEECCcChHHHHHHHHh-cCCeEEEEE
Q 048025 170 FEYIIENKGLASEADYPYRREQGTCDKQKE--------------KAVAATISKYEDLPQGDEQALLQAVS-KQPVSVCVE 234 (246)
Q Consensus 170 ~~y~~~~~Gi~~e~~yPy~~~~~~C~~~~~--------------~~~~~~i~~~~~~~~~~~~~i~~~l~-~GPv~v~i~ 234 (246)
++|++++ |+++|++|||......|..... ....+.+++|..+. ++++||++|. +|||+|+|.
T Consensus 80 ~~~~~~~-Gl~~e~~yPY~~~~~~C~~~~~~~~c~~~~~c~~~~~~~~~~i~~~~~~~--~~~~i~~~l~~~GPV~v~i~ 156 (239)
T cd02698 80 YEYAHKH-GIPDETCNPYQAKDGECNPFNRCGTCNPFGECFAIKNYTLYFVSDYGSVS--GRDKMMAEIYARGPISCGIM 156 (239)
T ss_pred HHHHHHc-CcCCCCeeCCcCCCCCCcCCCCCCCcccCcccccccccceEEeeeceecC--CHHHHHHHHHHcCCEEEEEE
Confidence 9999987 9999999999987766753100 12346788888886 6889999987 999999999
Q ss_pred cCcccccccCCC
Q 048025 235 ASGRAFHFYKSG 246 (246)
Q Consensus 235 v~~~~f~~Y~sG 246 (246)
++ ++|+.|++|
T Consensus 157 ~~-~~f~~Y~~G 167 (239)
T cd02698 157 AT-EALENYTGG 167 (239)
T ss_pred ec-ccccccCCe
Confidence 98 799999997
No 8
>cd02248 Peptidase_C1A Peptidase C1A subfamily (MEROPS database nomenclature); composed of cysteine peptidases (CPs) similar to papain, including the mammalian CPs (cathepsins B, C, F, H, L, K, O, S, V, X and W). Papain is an endopeptidase with specific substrate preferences, primarily for bulky hydrophobic or aromatic residues at the S2 subsite, a hydrophobic pocket in papain that accommodates the P2 sidechain of the substrate (the second residue away from the scissile bond). Most members of the papain subfamily are endopeptidases. Some exceptions to this rule can be explained by specific details of the catalytic domains like the occluding loop in cathepsin B which confers an additional carboxydipeptidyl activity and the mini-chain of cathepsin H resulting in an N-terminal exopeptidase activity. Papain-like CPs have different functions in various organisms. Plant CPs are used to mobilize storage proteins in seeds. Parasitic CPs act extracellularly to help invade tissues and cells, to h
Probab=100.00 E-value=1e-37 Score=258.31 Aligned_cols=144 Identities=57% Similarity=0.985 Sum_probs=134.2
Q ss_pred CCceecccCCCcccccCcCCCcchHHHHHHHHHHHHHHHhcCCCccCChHHHhhcCCC-CCCCCCCcchHHHHHHHHhcC
Q 048025 100 PTSIDWREKGAVTHIKDQGQTGSSWAFSAVAAVEGITQITSRKLIELSGQQLVDCSTD-NHGCSGGLMDKAFEYIIENKG 178 (246)
Q Consensus 100 P~~~Dwr~~g~v~~v~~Qg~CGsCwAfa~~~~le~~~~i~~~~~~~lS~q~l~dC~~~-~~gC~GG~~~~a~~y~~~~~G 178 (246)
|++||||+.+.++||+|||.||+|||||++++||++++|+++..+.||+|+|++|... +.||.||+...|++++.++ |
T Consensus 1 P~~~d~r~~~~~~~v~dQg~cgsCwAfa~~~~le~~~~i~~~~~~~lS~q~l~~c~~~~~~gC~GG~~~~a~~~~~~~-G 79 (210)
T cd02248 1 PESVDWREKGAVTPVKDQGSCGSCWAFSTVGALEGAYAIKTGKLVSLSEQQLVDCSTSGNNGCNGGNPDNAFEYVKNG-G 79 (210)
T ss_pred CCcccCCcCCCCCCCccCCCCcchHHhHHHHHHHHHHHHHcCCCcccCHHHHhccCCCCCCCCCCCCHHHhHHHHHHC-C
Confidence 8899999999999999999999999999999999999999998899999999999986 7899999999999999876 9
Q ss_pred CCCCcCCCCCCCCccccccccCCceEEEeeeEECCcChHHHHHHHHh-cCCeEEEEEcCcccccccCCC
Q 048025 179 LASEADYPYRREQGTCDKQKEKAVAATISKYEDLPQGDEQALLQAVS-KQPVSVCVEASGRAFHFYKSG 246 (246)
Q Consensus 179 i~~e~~yPy~~~~~~C~~~~~~~~~~~i~~~~~~~~~~~~~i~~~l~-~GPv~v~i~v~~~~f~~Y~sG 246 (246)
+++|++|||......|... .....++|++|..+...++++||++|. +|||+++|.+. ++|+.|++|
T Consensus 80 i~~e~~yPY~~~~~~C~~~-~~~~~~~i~~~~~i~~~~~~~ik~~l~~~gPV~~~~~~~-~~f~~y~~G 146 (210)
T cd02248 80 LASESDYPYTGKDGTCKYN-SSKVGAKITGYSNVPPGDEEALKAALANYGPVSVAIDAS-SSFQFYKGG 146 (210)
T ss_pred cCccccCCccCCCCCccCC-CCcccEEEeeEEEcCCCcHHHHHHHHhhcCCEEEEEecC-cccccCCCC
Confidence 9999999999988899876 446789999999998767899999998 89999999998 899999987
No 9
>cd02620 Peptidase_C1A_CathepsinB Cathepsin B group; composed of cathepsin B and similar proteins, including tubulointerstitial nephritis antigen (TIN-Ag). Cathepsin B is a lysosomal papain-like cysteine peptidase which is expressed in all tissues and functions primarily as an exopeptidase through its carboxydipeptidyl activity. Together with other cathepsins, it is involved in the degradation of proteins, proenzyme activation, Ag processing, metabolism and apoptosis. Cathepsin B has been implicated in a number of human diseases such as cancer, rheumatoid arthritis, osteoporosis and Alzheimer's disease. The unique carboxydipeptidyl activity of cathepsin B is attributed to the presence of an occluding loop in its active site which favors the binding of the C-termini of substrate proteins. Some members of this group do not possess the occluding loop. TIN-Ag is an extracellular matrix basement protein which was originally identified as a target Ag involved in anti-tubular basement membrane
Probab=100.00 E-value=2.9e-37 Score=260.33 Aligned_cols=144 Identities=33% Similarity=0.587 Sum_probs=121.9
Q ss_pred CCceecccC--CCc--ccccCcCCCcchHHHHHHHHHHHHHHHhcC--CCccCChHHHhhcCCC-CCCCCCCcchHHHHH
Q 048025 100 PTSIDWREK--GAV--THIKDQGQTGSSWAFSAVAAVEGITQITSR--KLIELSGQQLVDCSTD-NHGCSGGLMDKAFEY 172 (246)
Q Consensus 100 P~~~Dwr~~--g~v--~~v~~Qg~CGsCwAfa~~~~le~~~~i~~~--~~~~lS~q~l~dC~~~-~~gC~GG~~~~a~~y 172 (246)
|++||||+. +++ +||+|||.||||||||++++||++++|+++ +.+.||+|+|+||+.. +.||+||++..|++|
T Consensus 1 p~~~DwR~~~~~~~~v~~v~dQg~CGsCwAfa~~~~le~~~~i~~~~~~~~~LS~Q~lidC~~~~~~gC~GG~~~~a~~~ 80 (236)
T cd02620 1 PESFDAREKWPNCISIGEIRDQGNCGSCWAFSAVEAFSDRLCIQSNGKENVLLSAQDLLSCCSGCGDGCNGGYPDAAWKY 80 (236)
T ss_pred CCcccchhhCCCCCCccccCCcccchhHHHHHHHHHHhhHHHHhcCCCCccccCHHHHHhhcCCCCCCCCCCCHHHHHHH
Confidence 899999997 554 599999999999999999999999999888 7789999999999986 789999999999999
Q ss_pred HHHhcCCCCCcCCCCCCCCcc------------------cccccc---CCceEEEeeeEECCcChHHHHHHHHh-cCCeE
Q 048025 173 IIENKGLASEADYPYRREQGT------------------CDKQKE---KAVAATISKYEDLPQGDEQALLQAVS-KQPVS 230 (246)
Q Consensus 173 ~~~~~Gi~~e~~yPy~~~~~~------------------C~~~~~---~~~~~~i~~~~~~~~~~~~~i~~~l~-~GPv~ 230 (246)
++++ |+++|++|||...... |..... ....+++..+..+. .++++||++|. +|||+
T Consensus 81 i~~~-G~~~e~~yPY~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~-~~~~~ik~~l~~~GPv~ 158 (236)
T cd02620 81 LTTT-GVVTGGCQPYTIPPCGHHPEGPPPCCGTPYCTPKCQDGCEKTYEEDKHKGKSAYSVP-SDETDIMKEIMTNGPVQ 158 (236)
T ss_pred HHhc-CCCcCCEecCcCCCCccCCCCCCCCCCCCCCCCCCCcCCccccceeeeeecceeeeC-CHHHHHHHHHHHCCCeE
Confidence 9987 9999999999876543 332210 11234556666665 47899999998 89999
Q ss_pred EEEEcCcccccccCCC
Q 048025 231 VCVEASGRAFHFYKSG 246 (246)
Q Consensus 231 v~i~v~~~~f~~Y~sG 246 (246)
|+|.+. ++|+.|++|
T Consensus 159 v~i~~~-~~f~~Y~~G 173 (236)
T cd02620 159 AAFTVY-EDFLYYKSG 173 (236)
T ss_pred EEEEec-hhhhhcCCc
Confidence 999997 899999987
No 10
>PTZ00364 dipeptidyl-peptidase I precursor; Provisional
Probab=100.00 E-value=4.4e-37 Score=282.00 Aligned_cols=147 Identities=20% Similarity=0.382 Sum_probs=125.9
Q ss_pred CCCCCCceecccCC---CcccccCcCC---CcchHHHHHHHHHHHHHHHhcC------CCccCChHHHhhcCCCCCCCCC
Q 048025 96 VTDVPTSIDWREKG---AVTHIKDQGQ---TGSSWAFSAVAAVEGITQITSR------KLIELSGQQLVDCSTDNHGCSG 163 (246)
Q Consensus 96 ~~~lP~~~Dwr~~g---~v~~v~~Qg~---CGsCwAfa~~~~le~~~~i~~~------~~~~lS~q~l~dC~~~~~gC~G 163 (246)
..+||++||||+.| +|+||||||. ||||||||++++||++++|+++ +.+.||+|+|+||+..+.||+|
T Consensus 202 ~~~LP~sfDWR~~gg~~~VtpVrdQg~~~~CGSCWAFAav~alEsr~~I~tn~~~~~g~~~~LS~QqLVDCs~~n~GCdG 281 (548)
T PTZ00364 202 GDPPPAAWSWGDVGGASFLPAAPPASPGRGCNSSYVEAALAAMMARVMVASNRTDPLGQQTFLSARHVLDCSQYGQGCAG 281 (548)
T ss_pred ccCCCCccccCcCCCCccCCCCcCCCCCCCCcCHHHHHHHHHHHHHHHHHhCCCcccCcccCcCHHHHhcccCCCCCCCC
Confidence 35799999999986 7999999999 9999999999999999999884 4678999999999977899999
Q ss_pred CcchHHHHHHHHhcCCCCCcCC--CCCCCCc---cccccccCCceEEEee------eEECCcChHHHHHHHHh-cCCeEE
Q 048025 164 GLMDKAFEYIIENKGLASEADY--PYRREQG---TCDKQKEKAVAATISK------YEDLPQGDEQALLQAVS-KQPVSV 231 (246)
Q Consensus 164 G~~~~a~~y~~~~~Gi~~e~~y--Py~~~~~---~C~~~~~~~~~~~i~~------~~~~~~~~~~~i~~~l~-~GPv~v 231 (246)
|++..|++|++++ ||++|++| ||.+.++ .|... .....+.++. |..+. .++++||++|. +|||+|
T Consensus 282 G~p~~A~~yi~~~-GI~tE~dY~~PY~~~dg~~~~Ck~~-~~~~~y~~~~~~~I~gyy~~~-~~e~~I~~eI~~~GPVsV 358 (548)
T PTZ00364 282 GFPEEVGKFAETF-GILTTDSYYIPYDSGDGVERACKTR-RPSRRYYFTNYGPLGGYYGAV-TDPDEIIWEIYRHGPVPA 358 (548)
T ss_pred CcHHHHHHHHHhC-CcccccccCCCCCCCCCCCCCCCCC-cccceeeeeeeEEecceeecC-CcHHHHHHHHHHcCCeEE
Confidence 9999999999887 99999999 9987655 58765 3334444444 44443 47889999998 899999
Q ss_pred EEEcCcccccccCCC
Q 048025 232 CVEASGRAFHFYKSG 246 (246)
Q Consensus 232 ~i~v~~~~f~~Y~sG 246 (246)
+|+++ .+|++|++|
T Consensus 359 aIda~-~df~~YksG 372 (548)
T PTZ00364 359 SVYAN-SDWYNCDEN 372 (548)
T ss_pred EEEec-hHHHhcCCC
Confidence 99998 799999986
No 11
>PTZ00049 cathepsin C-like protein; Provisional
Probab=100.00 E-value=7.6e-37 Score=283.54 Aligned_cols=149 Identities=22% Similarity=0.380 Sum_probs=126.5
Q ss_pred CCCCCCceecccC----CCcccccCcCCCcchHHHHHHHHHHHHHHHhcCC-----C-----ccCChHHHhhcCCCCCCC
Q 048025 96 VTDVPTSIDWREK----GAVTHIKDQGQTGSSWAFSAVAAVEGITQITSRK-----L-----IELSGQQLVDCSTDNHGC 161 (246)
Q Consensus 96 ~~~lP~~~Dwr~~----g~v~~v~~Qg~CGsCwAfa~~~~le~~~~i~~~~-----~-----~~lS~q~l~dC~~~~~gC 161 (246)
..+||.+||||+. +.++||+|||.||||||||++++||++++|++++ . ..||+|+||||+..+.||
T Consensus 378 ~~~LP~sfDWRd~~~~~~~vtpVkdQG~CGSCWAFAat~alEsR~~Ia~~~~l~~~~~~~~~~~LS~QqLLDCs~~nqGC 457 (693)
T PTZ00049 378 IDELPKNFTWGDPFNNNTREYDVTNQLLCGSCYIASQMYAFKRRIEIALTKNLDKKYLNNFDDLLSIQTVLSCSFYDQGC 457 (693)
T ss_pred cccCCCCEecCcCCCCCCcccCCCCCccCcHHHHHHHHHHHHHHHHHHhccccccccccccccCcCHHHhcccCCCCCCc
Confidence 4689999999985 6799999999999999999999999999998643 1 279999999999878999
Q ss_pred CCCcchHHHHHHHHhcCCCCCcCCCCCCCCccccccccC--------------------------------------Cce
Q 048025 162 SGGLMDKAFEYIIENKGLASEADYPYRREQGTCDKQKEK--------------------------------------AVA 203 (246)
Q Consensus 162 ~GG~~~~a~~y~~~~~Gi~~e~~yPy~~~~~~C~~~~~~--------------------------------------~~~ 203 (246)
+||++..|++|+.++ ||++|++|||++..+.|...... ..+
T Consensus 458 ~GG~~~~A~kya~~~-GI~tEscYPY~a~~g~C~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r 536 (693)
T PTZ00049 458 NGGFPYLVSKMAKLQ-GIPLDKVFPYTATEQTCPYQVDQSANSMNGSANLRQINAVFFSSETQSDMHADFEAPISSEPAR 536 (693)
T ss_pred CCCcHHHHHHHHHHC-CCCcCCccCCcCCCCCCCCCCCCccccccccccccccccccccccccccccccccccccccccc
Confidence 999999999999887 99999999999888888642110 123
Q ss_pred EEEeeeEECCc-------ChHHHHHHHHh-cCCeEEEEEcCcccccccCCC
Q 048025 204 ATISKYEDLPQ-------GDEQALLQAVS-KQPVSVCVEASGRAFHFYKSG 246 (246)
Q Consensus 204 ~~i~~~~~~~~-------~~~~~i~~~l~-~GPv~v~i~v~~~~f~~Y~sG 246 (246)
+.+++|..+.. .++++||++|. +|||+|+|+|+ ++|++|+||
T Consensus 537 ~y~k~y~yI~g~y~~~~~~~E~~Im~eI~~~GPVsVsIda~-~dF~~YksG 586 (693)
T PTZ00049 537 WYAKDYNYIGGCYGCNQCNGEKIMMNEIYRNGPIVASFEAS-PDFYDYADG 586 (693)
T ss_pred eeeeeeEEecccccccCCCCHHHHHHHHHhcCCEEEEEEec-hhhhcCCCc
Confidence 45566666631 47899999998 89999999998 799999998
No 12
>PF00112 Peptidase_C1: Papain family cysteine protease This is family C1 in the peptidase classification. ; InterPro: IPR000668 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of proteins belong to the peptidase family C1, sub-family C1A (papain family, clan CA). It includes proteins classed as non-peptidase homologs. These are have either been shown experimentally to lack peptidase activity or lack one or more of the active site residues. The papain family has a wide variety of activities, including broad-range (papain) and narrow-range endo-peptidases, aminopeptidases, dipeptidyl peptidases and enzymes with both exo- and endo-peptidase activity []. Members of the papain family are widespread, found in baculovirus [], eubacteria, yeast, and practically all protozoa, plants and mammals []. The proteins are typically lysosomal or secreted, and proteolytic cleavage of the propeptide is required for enzyme activation, although bleomycin hydrolase is cytosolic in fungi and mammals []. Papain-like cysteine proteinases are essentially synthesised as inactive proenzymes (zymogens) with N-terminal propeptide regions. The activation process of these enzymes includes the removal of propeptide regions. The propeptide regions serve a variety of functions in vivo and in vitro. The pro-region is required for the proper folding of the newly synthesised enzyme, the inactivation of the peptidase domain and stabilisation of the enzyme against denaturing at neutral to alkaline pH conditions. Amino acid residues within the pro-region mediate their membrane association, and play a role in the transport of the proenzyme to lysosomes. Among the most notable features of propeptides is their ability to inhibit the activity of their cognate enzymes and that certain propeptides exhibit high selectivity for inhibition of the peptidases from which they originate []. The catalytic residues of papain are Cys-25 and His-159, other important residues being Gln-19, which helps form the 'oxyanion hole', and Asn-175, which orientates the imidazole ring of His-159. ; GO: 0008234 cysteine-type peptidase activity, 0006508 proteolysis; PDB: 3MOR_B 3HHI_B 1S4V_A 3F75_A 1MEG_A 1PCI_C 1PPO_A 3HD3_B 1F29_A 1EWL_A ....
Probab=100.00 E-value=7.8e-35 Score=241.79 Aligned_cols=146 Identities=40% Similarity=0.733 Sum_probs=125.7
Q ss_pred CCCceecccC-CCcccccCcCCCcchHHHHHHHHHHHHHHHhc-CCCccCChHHHhhcCC-CCCCCCCCcchHHHHHHHH
Q 048025 99 VPTSIDWREK-GAVTHIKDQGQTGSSWAFSAVAAVEGITQITS-RKLIELSGQQLVDCST-DNHGCSGGLMDKAFEYIIE 175 (246)
Q Consensus 99 lP~~~Dwr~~-g~v~~v~~Qg~CGsCwAfa~~~~le~~~~i~~-~~~~~lS~q~l~dC~~-~~~gC~GG~~~~a~~y~~~ 175 (246)
||++||||+. +.++||+|||.||+|||||+++++|++++++. ...+.||+|+|++|.. .+.+|+||++..|++++++
T Consensus 1 lP~~~D~r~~~~~~~~v~dQg~~gsCwafa~~~~~e~~~~~~~~~~~~~lS~q~l~~~~~~~~~~c~gg~~~~a~~~~~~ 80 (219)
T PF00112_consen 1 LPKSFDWRDKGGRITPVRDQGSCGSCWAFAAAAALESRLAIQNNGKNVDLSEQYLIDCSNKYNKGCDGGSPFDALKYIKN 80 (219)
T ss_dssp STSSEEGGGTTTCSG---BTTSSBTHHHHHHHHHHHHHHHHHHTSSCEEB-HHHHHHHSTGTSSTTBBBEHHHHHHHHHH
T ss_pred CCCCEecccCCCCcCccccCCcccccccchhccceeccccccccccccccccccccccccccccccccCcccccceeecc
Confidence 7999999998 58999999999999999999999999999998 6789999999999998 4789999999999999999
Q ss_pred hcCCCCCcCCCCCCCC-ccccccccCCc-eEEEeeeEECCcChHHHHHHHHh-cCCeEEEEEcCcc-cccccCCC
Q 048025 176 NKGLASEADYPYRREQ-GTCDKQKEKAV-AATISKYEDLPQGDEQALLQAVS-KQPVSVCVEASGR-AFHFYKSG 246 (246)
Q Consensus 176 ~~Gi~~e~~yPy~~~~-~~C~~~~~~~~-~~~i~~~~~~~~~~~~~i~~~l~-~GPv~v~i~v~~~-~f~~Y~sG 246 (246)
+.|+++|++|||.... ..|... .... .+++..|..+...+.++||++|. +|||+++|.+. + +|+.|++|
T Consensus 81 ~~Gi~~e~~~pY~~~~~~~c~~~-~~~~~~~~i~~~~~~~~~~~~~ik~~L~~~gpV~~~~~~~-~~~f~~~~~g 153 (219)
T PF00112_consen 81 NNGIVTEEDYPYNGNENPTCKSK-KSNSYYVKIKGYGKVKDNDIEDIKKALMKYGPVVASIDVS-SEDFQNYKSG 153 (219)
T ss_dssp HTSBEBTTTS--SSSSSCSSCHS-GGGEEEBEESEEEEEESTCHHHHHHHHHHHSSEEEEEEEE-SHHHHTEESS
T ss_pred cCccccccccccccccccccccc-ccccccccccccccccccchhHHHHHHhhCceeeeeeecc-ccccccccce
Confidence 3499999999999877 689876 3332 47899999988667999999998 79999999998 6 69999887
No 13
>cd02619 Peptidase_C1 C1 Peptidase family (MEROPS database nomenclature), also referred to as the papain family; composed of two subfamilies of cysteine peptidases (CPs), C1A (papain) and C1B (bleomycin hydrolase). Papain-like enzymes are mostly endopeptidases with some exceptions like cathepsins B, C, H and X, which are exopeptidases. Papain-like CPs have different functions in various organisms. Plant CPs are used to mobilize storage proteins in seeds while mammalian CPs are primarily lysosomal enzymes responsible for protein degradation in the lysosome. Papain-like CPs are synthesized as inactive proenzymes with N-terminal propeptide regions, which are removed upon activation. Bleomycin hydrolase (BH) is a CP that detoxifies bleomycin by hydrolysis of an amide group. It acts as a carboxypeptidase on its C-terminus to convert itself into an aminopeptidase and peptide ligase. BH is found in all tissues in mammals as well as in many other eukaryotes. It forms a hexameric ring barrel str
Probab=99.97 E-value=1.4e-31 Score=222.63 Aligned_cols=142 Identities=28% Similarity=0.485 Sum_probs=125.2
Q ss_pred ceecccCCCcccccCcCCCcchHHHHHHHHHHHHHHHhcC--CCccCChHHHhhcCCCC-----CCCCCCcchHHHH-HH
Q 048025 102 SIDWREKGAVTHIKDQGQTGSSWAFSAVAAVEGITQITSR--KLIELSGQQLVDCSTDN-----HGCSGGLMDKAFE-YI 173 (246)
Q Consensus 102 ~~Dwr~~g~v~~v~~Qg~CGsCwAfa~~~~le~~~~i~~~--~~~~lS~q~l~dC~~~~-----~gC~GG~~~~a~~-y~ 173 (246)
.||||+.+ ++||+|||.||+|||||+++++|++++++++ +.+.||+|+|++|.... .||.||.+..++. ++
T Consensus 1 ~~d~r~~~-~~~v~dQg~~gsCwafa~~~~les~~~~~~~~~~~~~lS~q~l~~c~~~~~~~~~~~c~gG~~~~~~~~~~ 79 (223)
T cd02619 1 SVDLRPLR-LTPVKNQGSRGSCWAFASAYALESAYRIKGGEDEYVDLSPQYLYICANDECLGINGSCDGGGPLSALLKLV 79 (223)
T ss_pred CCcchhcC-CCCcccCCCCcCcHHHHHHHHHHHHHHHhcCCcccccCCHHHHHHhccccccccCCCCCCCcHHHHHHHHH
Confidence 48999998 9999999999999999999999999999987 78999999999999752 6999999999998 77
Q ss_pred HHhcCCCCCcCCCCCCCCcccccc---ccCCceEEEeeeEECCcChHHHHHHHHh-cCCeEEEEEcCcccccccCCC
Q 048025 174 IENKGLASEADYPYRREQGTCDKQ---KEKAVAATISKYEDLPQGDEQALLQAVS-KQPVSVCVEASGRAFHFYKSG 246 (246)
Q Consensus 174 ~~~~Gi~~e~~yPy~~~~~~C~~~---~~~~~~~~i~~~~~~~~~~~~~i~~~l~-~GPv~v~i~v~~~~f~~Y~sG 246 (246)
..+ ||++|++|||......|... ......+++..|..+...++++||++|. +|||+++|.+. .+|+.|++|
T Consensus 80 ~~~-Gi~~e~~~Py~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~ik~aL~~~gPv~~~~~~~-~~~~~~~~~ 154 (223)
T cd02619 80 ALK-GIPPEEDYPYGAESDGEEPKSEAALNAAKVKLKDYRRVLKNNIEDIKEALAKGGPVVAGFDVY-SGFDRLKEG 154 (223)
T ss_pred HHc-CCCccccCCCCCCCCCCCCCCccchhhcceeecceeEeCchhHHHHHHHHHHCCCEEEEEEcc-cchhcccCc
Confidence 766 99999999999987777542 1234568899999988777899999998 89999999998 899999876
No 14
>KOG1544 consensus Predicted cysteine proteinase TIN-ag [General function prediction only]
Probab=99.97 E-value=1.1e-32 Score=232.15 Aligned_cols=202 Identities=25% Similarity=0.406 Sum_probs=158.9
Q ss_pred HHHHHHhhCCCCceEEe-cccCCCCCHHHHHHHhcCCCCCCCCCCcCCCCCCCcccCCCCCCCCceecccC--CCccccc
Q 048025 39 EYIGKANKEGNRTYKLG-TNEFSDLTNEEFRASYTGYNTPVPSLSRQSSLPSNFKYQNVTDVPTSIDWREK--GAVTHIK 115 (246)
Q Consensus 39 ~~I~~~N~~~~~~~~~g-~n~fsD~t~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lP~~~Dwr~~--g~v~~v~ 115 (246)
++|+++|. ++.+|+++ +.+|..||.++-.+..+|..+++..+ ..|.... ......++||+.|+.+++ +++.|+.
T Consensus 151 d~iE~in~-G~YgW~A~NYSaFWGmtL~DGiKyRLGTL~Ps~sv-~nMNEi~-~~l~p~~~LPE~F~As~KWp~liH~pl 227 (470)
T KOG1544|consen 151 DMIEAINQ-GNYGWQAGNYSAFWGMTLDDGIKYRLGTLRPSSSV-MNMNEIY-TVLNPGEVLPEAFEASEKWPNLIHEPL 227 (470)
T ss_pred HHHHHHhc-CCccccccchhhhhcccccccceeeecccCchhhh-hhHHhHh-hccCcccccchhhhhhhcCCccccCcc
Confidence 47899997 66899996 67999999999888878866655321 2211000 011223689999999998 8999999
Q ss_pred CcCCCcchHHHHHHHHHHHHHHHhcCCC--ccCChHHHhhcCCC-CCCCCCCcchHHHHHHHHhcCCCCCcCCCCCCC--
Q 048025 116 DQGQTGSSWAFSAVAAVEGITQITSRKL--IELSGQQLVDCSTD-NHGCSGGLMDKAFEYIIENKGLASEADYPYRRE-- 190 (246)
Q Consensus 116 ~Qg~CGsCwAfa~~~~le~~~~i~~~~~--~~lS~q~l~dC~~~-~~gC~GG~~~~a~~y~~~~~Gi~~e~~yPy~~~-- 190 (246)
|||+|+++|||+++++..++++|.+... ..||+|+|++|... ..||.||+++.||=||.+. ||+...||||...
T Consensus 228 DQgnCa~SWafSTaavasDRiAI~S~GR~t~~LSpQnLlSC~~h~q~GC~gG~lDRAWWYlRKr-GvVsdhCYP~~~dQ~ 306 (470)
T KOG1544|consen 228 DQGNCAGSWAFSTAAVASDRVAIHSLGRMTPVLSPQNLLSCDTHQQQGCRGGRLDRAWWYLRKR-GVVSDHCYPFSGDQA 306 (470)
T ss_pred ccCCcccceeeeeehhccceeEEeeccccccccChHHhcchhhhhhccCccCcccchheeeecc-cccccccccccCCCC
Confidence 9999999999999999999999987543 47999999999976 7999999999999999987 9999999999752
Q ss_pred --Cccccccc-------------------cCCceEEEeeeEECCcChHHHHHHHHh-cCCeEEEEEcCcccccccCCC
Q 048025 191 --QGTCDKQK-------------------EKAVAATISKYEDLPQGDEQALLQAVS-KQPVSVCVEASGRAFHFYKSG 246 (246)
Q Consensus 191 --~~~C~~~~-------------------~~~~~~~i~~~~~~~~~~~~~i~~~l~-~GPv~v~i~v~~~~f~~Y~sG 246 (246)
.+.|.... .++..++++--+.|+ .+|++||.+|. +|||.+.|.|. +||++|++|
T Consensus 307 ~~~~~C~m~sR~~grgkRqat~~CPn~~~~Sn~iyq~tPPYrVS-SnE~eImkElM~NGPVQA~m~VH-EDFF~YkgG 382 (470)
T KOG1544|consen 307 GPAPPCMMHSRAMGRGKRQATAHCPNSYVNSNDIYQVTPPYRVS-SNEKEIMKELMENGPVQALMEVH-EDFFLYKGG 382 (470)
T ss_pred CCCCCceeeccccCcccccccCcCCCcccccCceeeecCCeecc-CCHHHHHHHHHhCCChhhhhhhh-hhhhhhccc
Confidence 23453221 111334555455565 58999999998 99999999998 999999998
No 15
>smart00645 Pept_C1 Papain family cysteine protease.
Probab=99.97 E-value=1.2e-30 Score=210.24 Aligned_cols=91 Identities=63% Similarity=1.035 Sum_probs=86.0
Q ss_pred CCCceecccCCCcccccCcCCCcchHHHHHHHHHHHHHHHhcCCCccCChHHHhhcCCC-CCCCCCCcchHHHHHHHHhc
Q 048025 99 VPTSIDWREKGAVTHIKDQGQTGSSWAFSAVAAVEGITQITSRKLIELSGQQLVDCSTD-NHGCSGGLMDKAFEYIIENK 177 (246)
Q Consensus 99 lP~~~Dwr~~g~v~~v~~Qg~CGsCwAfa~~~~le~~~~i~~~~~~~lS~q~l~dC~~~-~~gC~GG~~~~a~~y~~~~~ 177 (246)
||++||||+.++++||+|||.||+|||||++++||++++|++++.+.||+|+|++|... +.||+||++..|++|+.++.
T Consensus 1 lP~~~D~R~~~~~~~v~dQg~CGsCwAfa~~~~ie~~~~i~~~~~~~lS~q~l~~C~~~~~~gC~GG~~~~a~~~~~~~~ 80 (174)
T smart00645 1 LPESFDWRKKGAVTPVKDQGQCGSCWAFSATGALEGRYCIKTGKLVSLSEQQLVDCSTGGNNGCNGGLPDNAFEYIKKNG 80 (174)
T ss_pred CCCcCcccccCCCCccccCcccchHHHHHHHHHHHHHHHHhcCCccccCHHHHhhhcCCCCCCCCCcCHHHHHHHHHHcC
Confidence 69999999999999999999999999999999999999999998899999999999975 67999999999999998765
Q ss_pred CCCCCcCCCCCC
Q 048025 178 GLASEADYPYRR 189 (246)
Q Consensus 178 Gi~~e~~yPy~~ 189 (246)
|+++|++|||+.
T Consensus 81 Gi~~e~~~PY~~ 92 (174)
T smart00645 81 GLETESCYPYTG 92 (174)
T ss_pred CcccccccCccc
Confidence 899999999976
No 16
>PTZ00462 Serine-repeat antigen protein; Provisional
Probab=99.95 E-value=3.4e-27 Score=225.27 Aligned_cols=134 Identities=19% Similarity=0.344 Sum_probs=106.5
Q ss_pred cccccCcCCCcchHHHHHHHHHHHHHHHhcCCCccCChHHHhhcCCC--CCCCCCCcch-HHHHHHHHhcCCCCCcCCCC
Q 048025 111 VTHIKDQGQTGSSWAFSAVAAVEGITQITSRKLIELSGQQLVDCSTD--NHGCSGGLMD-KAFEYIIENKGLASEADYPY 187 (246)
Q Consensus 111 v~~v~~Qg~CGsCwAfa~~~~le~~~~i~~~~~~~lS~q~l~dC~~~--~~gC~GG~~~-~a~~y~~~~~Gi~~e~~yPy 187 (246)
..||+|||.||+|||||++++||++++|++++.+.||+|+|+||+.. +.||.||+.. .++.|+.+++||++|++|||
T Consensus 544 ~i~VKDQG~CGSCWAFASaaaLES~~cIkgg~~v~LSeQqLVDCs~~~gn~GC~GG~~~~efl~yI~e~GgLptESdYPY 623 (1004)
T PTZ00462 544 KIQIEDQGNCAISWIFASKYHLETIKCMKGYEPHAISALYIANCSKGEHKDRCDEGSNPLEFLQIIEDNGFLPADSNYLY 623 (1004)
T ss_pred CCCcccCCcchHHHHHHHHHHHHHHHHHhcCCCcccCHHHHHhcccccCCCCCCCCCcHHHHHHHHHHcCCCcccccCCC
Confidence 47899999999999999999999999999999999999999999864 6899999755 56699988866899999999
Q ss_pred CC--CCcccccccc-----------------CCceEEEeeeEECCcC----h----HHHHHHHHh-cCCeEEEEEcCccc
Q 048025 188 RR--EQGTCDKQKE-----------------KAVAATISKYEDLPQG----D----EQALLQAVS-KQPVSVCVEASGRA 239 (246)
Q Consensus 188 ~~--~~~~C~~~~~-----------------~~~~~~i~~~~~~~~~----~----~~~i~~~l~-~GPv~v~i~v~~~~ 239 (246)
.. ..+.|..... ....+.+.+|..+... + +++||++|+ +|||+|+|.+. +
T Consensus 624 t~k~~~g~Cp~~~~~w~n~~~~~kll~~~~~~~~~i~~kgY~~~~s~~~~~n~d~~i~~IK~eI~~kGPVaV~IdAs--d 701 (1004)
T PTZ00462 624 NYTKVGEDCPDEEDHWMNLLDHGKILNHNKKEPNSLDGKAYRAYESEHFHDKMDAFIKIIKDEIMNKGSVIAYIKAE--N 701 (1004)
T ss_pred ccCCCCCCCCCCcccccccccccccccccccccceeeccceEEecccccccchhhHHHHHHHHHHhcCCEEEEEEee--h
Confidence 75 5567874311 0112344567665421 1 468999998 89999999985 6
Q ss_pred ccccC-CC
Q 048025 240 FHFYK-SG 246 (246)
Q Consensus 240 f~~Y~-sG 246 (246)
|+.|. +|
T Consensus 702 f~~Y~~sG 709 (1004)
T PTZ00462 702 VLGYEFNG 709 (1004)
T ss_pred HHhhhcCC
Confidence 88884 66
No 17
>PF08246 Inhibitor_I29: Cathepsin propeptide inhibitor domain (I29); InterPro: IPR013201 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. This entry represents a peptidase inhibitor domain, which belongs to MEROPS peptidase inhibitor family I29. The domain is also found at the N terminus of a variety of peptidase precursors that belong to MEROPS peptidase subfamily C1A; these include cathepsin L, papain, and procaricain (P10056 from SWISSPROT) []. It forms an alpha-helical domain that runs through the substrate-binding site, preventing access. Removal of this region by proteolytic cleavage results in activation of the enzyme. This domain is also found, in one or more copies, in a variety of cysteine peptidase inhibitors such as salarin [].; PDB: 3QT4_A 3QJ3_A 2C0Y_A 2L95_A 1CJL_A 1CS8_A 7PCK_A 1BY8_A 1PCI_A 2O6X_A ....
Probab=99.75 E-value=4.2e-18 Score=112.41 Aligned_cols=58 Identities=52% Similarity=0.807 Sum_probs=52.0
Q ss_pred HHHHHHHhCCccCCHHHHHHHHHHHHHHHHHHHHHhhCCCCceEEecccCCCCCHHHH
Q 048025 10 HEQWMAQHGRTYKDELEKAMRLNIFKQNLEYIGKANKEGNRTYKLGTNEFSDLTNEEF 67 (246)
Q Consensus 10 f~~f~~~~~k~Y~~~~e~~~r~~~F~~n~~~I~~~N~~~~~~~~~g~n~fsD~t~~E~ 67 (246)
|++|+++|+|.|.+.+|+..|+.+|.+|++.|.+||+.++.+|++|+|+|+|||.+||
T Consensus 1 F~~~~~~~~k~Y~~~~e~~~R~~~F~~N~~~I~~~N~~~~~~~~~~~N~fsD~t~eEf 58 (58)
T PF08246_consen 1 FEQFKKKYGKSYKSAEEEARRFAIFKENLRRIEEHNANGNNTYKLGLNQFSDMTPEEF 58 (58)
T ss_dssp HHHHHHHCT---SSHHHHHHHHHHHHHHHHHHHHHHHTTSSSEEE-SSTTTTSSHHHH
T ss_pred CHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCCCeEEeCccccCcChhhC
Confidence 8999999999999999999999999999999999997777999999999999999997
No 18
>smart00848 Inhibitor_I29 Cathepsin propeptide inhibitor domain (I29). This domain is found at the N-terminus of some C1 peptidases such as Cathepsin L where it acts as a propeptide. There are also a number of proteins that are composed solely of multiple copies of this domain such as the peptidase inhibitor salarin. This family is classified as I29 by MEROPS. Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a s
Probab=99.61 E-value=8.8e-16 Score=100.81 Aligned_cols=57 Identities=47% Similarity=0.859 Sum_probs=53.9
Q ss_pred HHHHHHHhCCccCCHHHHHHHHHHHHHHHHHHHHHhhCCCCceEEecccCCCCCHHH
Q 048025 10 HEQWMAQHGRTYKDELEKAMRLNIFKQNLEYIGKANKEGNRTYKLGTNEFSDLTNEE 66 (246)
Q Consensus 10 f~~f~~~~~k~Y~~~~e~~~r~~~F~~n~~~I~~~N~~~~~~~~~g~n~fsD~t~~E 66 (246)
|++|+.+|+|.|.+.+|...|+.+|.+|++.|+.||..+..+|++|+|+|+|||++|
T Consensus 1 f~~~~~~~~k~y~~~~e~~~r~~~f~~n~~~i~~~N~~~~~~~~~~~N~fsDlt~eE 57 (57)
T smart00848 1 FEQWKKKYGKSYSSEEEELRRFEIFKENLKFIEEHNKKNDHSYTLGLNQFADLTNEE 57 (57)
T ss_pred ChHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEecCcccccCCCCC
Confidence 689999999999999999999999999999999999877689999999999999875
No 19
>COG4870 Cysteine protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.32 E-value=4.5e-13 Score=116.06 Aligned_cols=135 Identities=24% Similarity=0.389 Sum_probs=91.4
Q ss_pred CCCCceecccCCCcccccCcCCCcchHHHHHHHHHHHHHHHhcCCCccCChHHHhhcCCC--CCCC-----CCCcchHHH
Q 048025 98 DVPTSIDWREKGAVTHIKDQGQTGSSWAFSAVAAVEGITQITSRKLIELSGQQLVDCSTD--NHGC-----SGGLMDKAF 170 (246)
Q Consensus 98 ~lP~~~Dwr~~g~v~~v~~Qg~CGsCwAfa~~~~le~~~~i~~~~~~~lS~q~l~dC~~~--~~gC-----~GG~~~~a~ 170 (246)
.+|+.||||+.|.|+||++||.||+||||++++++|+.+.-.. .+.+|+-.+..-... ..+| +||....+.
T Consensus 98 s~~~~fd~r~~g~vs~v~dQg~~Gscwaf~t~~sles~l~~~~--~w~~s~~nm~~ll~~~ye~~fd~~~~d~g~~~m~~ 175 (372)
T COG4870 98 SLPSYFDRRDEGKVSPVKDQGSGGSCWAFATTRSLESYLNPES--AWDFSENNMKNLLGVPYEKGFDYTSNDGGNADMSA 175 (372)
T ss_pred cchhheeeeccCCcccccccCcccceEeeeehhhhhheecccc--cccccccchhhhcCCCccccCCCccccCCcccccc
Confidence 4899999999999999999999999999999999999875433 345555554432211 2334 377777777
Q ss_pred HHHHHhcCCCCCcCCCCCCCCccccccccCCceEEEeeeEECCc----ChHHHHHHHHh-cCCeEE--EEEcC
Q 048025 171 EYIIENKGLASEADYPYRREQGTCDKQKEKAVAATISKYEDLPQ----GDEQALLQAVS-KQPVSV--CVEAS 236 (246)
Q Consensus 171 ~y~~~~~Gi~~e~~yPy~~~~~~C~~~~~~~~~~~i~~~~~~~~----~~~~~i~~~l~-~GPv~v--~i~v~ 236 (246)
.|+.+..|.+.+.+-||......|....+. ..++..-..++. -+...|++++. +|-+.. .|+++
T Consensus 176 a~l~e~sgpv~et~d~y~~~s~~~~~~~p~--~k~~~~~~~i~~~~~~LdnG~i~~~~~~yg~~s~~~~id~~ 246 (372)
T COG4870 176 AYLTEWSGPVYETDDPYSENSYFSPTNLPV--TKHVQEAQIIPSRKKYLDNGNIKAMFGFYGAVSSSMYIDAT 246 (372)
T ss_pred ccccccCCcchhhcCccccccccCCcCCch--hhccccceecccchhhhcccchHHHHhhhccccceeEEecc
Confidence 788888899999999998877666653211 122222222321 23455777776 676553 34444
No 20
>cd00585 Peptidase_C1B Peptidase C1B subfamily (MEROPS database nomenclature); composed of eukaryotic bleomycin hydrolases (BH) and bacterial aminopeptidases C (pepC). The proteins of this subfamily contain a large insert relative to the C1A peptidase (papain) subfamily. BH is a cysteine peptidase that detoxifies bleomycin by hydrolysis of an amide group. It acts as a carboxypeptidase on its C-terminus to convert itself into an aminopeptidase and peptide ligase. BH is found in all tissues in mammals as well as in many other eukaryotes. Bleomycin, a glycopeptide derived from the fungus Streptomyces verticullus, is an effective anticancer drug due to its ability to induce DNA strand breaks. Human BH is the major cause of tumor cell resistance to bleomycin chemotherapy, and is also genetically linked to Alzheimer's disease. In addition to its peptidase activity, the yeast BH (Gal6) binds DNA and acts as a repressor in the Gal4 regulatory system. BH forms a hexameric ring barrel structure w
Probab=98.16 E-value=2.6e-06 Score=77.56 Aligned_cols=76 Identities=22% Similarity=0.301 Sum_probs=62.4
Q ss_pred ccccCcCCCcchHHHHHHHHHHHHHHHh-cCCCccCChHHHhh----------------cCC------------CCCCCC
Q 048025 112 THIKDQGQTGSSWAFSAVAAVEGITQIT-SRKLIELSGQQLVD----------------CST------------DNHGCS 162 (246)
Q Consensus 112 ~~v~~Qg~CGsCwAfa~~~~le~~~~i~-~~~~~~lS~q~l~d----------------C~~------------~~~gC~ 162 (246)
.||+||+.-|.||.||+..+|+..+..+ +.+.+.||+.+|.- +.. .....+
T Consensus 55 ~~vtnQ~~SGrCW~FA~Ln~lr~~~~k~~~~~~felSq~Yl~f~dklEkaN~fle~ii~~~~~~~~~R~v~~ll~~~~~D 134 (437)
T cd00585 55 EPVTNQKSSGRCWLFAALNVLRHQFMKKLNLKEFEFSQSYLFFWDKLEKANYFLENIIETADEPLDDRLVQFLLANPQND 134 (437)
T ss_pred CCcccCCCCchhHHHHCHHHHHHHHHHHcCCCCEEeCcHHHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHhCCcCC
Confidence 4899999999999999999999977763 55678999987765 210 144678
Q ss_pred CCcchHHHHHHHHhcCCCCCcCCCCC
Q 048025 163 GGLMDKAFEYIIENKGLASEADYPYR 188 (246)
Q Consensus 163 GG~~~~a~~y~~~~~Gi~~e~~yPy~ 188 (246)
||....+..-|.++ |+++.+.||-+
T Consensus 135 GGqw~m~~~li~KY-GvVPk~~~pet 159 (437)
T cd00585 135 GGQWDMLVNLIEKY-GLVPKSVMPES 159 (437)
T ss_pred CCchHHHHHHHHHc-CCCcccccCCC
Confidence 99999999999887 99999999954
No 21
>PF03051 Peptidase_C1_2: Peptidase C1-like family This family is a subfamily of the Prosite entry; InterPro: IPR004134 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of proteins belong to MEROPS peptidase family C1, sub-family C1B (bleomycin hydrolase, clan CA). This family contains prokaryotic and eukaryotic aminopeptidases and bleomycin hydrolases.; GO: 0004197 cysteine-type endopeptidase activity, 0006508 proteolysis; PDB: 3PW3_F 2CB5_A 1CB5_C 2DZZ_A 2E02_A 2E01_A 2E03_A 1A6R_A 1GCB_A 3GCB_A ....
Probab=98.01 E-value=1.4e-05 Score=72.97 Aligned_cols=76 Identities=24% Similarity=0.354 Sum_probs=49.9
Q ss_pred ccccCcCCCcchHHHHHHHHHHHHHHHhcC-CCccCChHHHh----------------hcCCC------------CCCCC
Q 048025 112 THIKDQGQTGSSWAFSAVAAVEGITQITSR-KLIELSGQQLV----------------DCSTD------------NHGCS 162 (246)
Q Consensus 112 ~~v~~Qg~CGsCwAfa~~~~le~~~~i~~~-~~~~lS~q~l~----------------dC~~~------------~~gC~ 162 (246)
.||.||..-|.||.||+..+++..+..+.+ +.+.||+-+|. ++... ....+
T Consensus 56 ~~vtnQk~SGRCW~FA~lN~lR~~~~kk~~l~~felSq~Yl~F~DKlEKaN~fLe~ii~~~~~~~d~R~v~~ll~~~~~D 135 (438)
T PF03051_consen 56 GPVTNQKSSGRCWLFAALNVLRHEIMKKLNLKDFELSQNYLFFWDKLEKANYFLENIIDTADEPLDDRLVRFLLKNPVSD 135 (438)
T ss_dssp -S--B--BSSTHHHHHHHHHHHHHHHHHCT-SS--B-HHHHHHHHHHHHHHHHHHHHHHCCTS-TTSHHHHHHHHSTT-S
T ss_pred CCCCCCCCCCCcchhhchHHHHHHHHHHcCCCceEeechHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHhcCCCC
Confidence 389999999999999999999998887665 67899998865 33221 34568
Q ss_pred CCcchHHHHHHHHhcCCCCCcCCCCC
Q 048025 163 GGLMDKAFEYIIENKGLASEADYPYR 188 (246)
Q Consensus 163 GG~~~~a~~y~~~~~Gi~~e~~yPy~ 188 (246)
||....+..-|.++ |||+.+.||-+
T Consensus 136 GGqw~~~~nli~KY-GvVPk~~mpet 160 (438)
T PF03051_consen 136 GGQWDMVVNLIKKY-GVVPKSVMPET 160 (438)
T ss_dssp -B-HHHHHHHHHHH----BGGGSTTG
T ss_pred CCchHHHHHHHHHc-CcCcHhhCCCC
Confidence 99888888888887 99999999965
No 22
>PF08127 Propeptide_C1: Peptidase family C1 propeptide; InterPro: IPR012599 This domain is found at the N-terminal of cathepsin B and cathepsin B-like peptidases that belong to MEROPS peptidase subfamily C1A. Cathepsin B are lysosomal cysteine proteinases belonging to the papain superfamily and are unique in their ability to act as both an endo- and an exopeptidases. They are synthesized as inactive zymogens. Activation of the peptidases occurs with the removal of the propeptide [, ]. ; GO: 0004197 cysteine-type endopeptidase activity, 0050790 regulation of catalytic activity; PDB: 1MIR_A 1PBH_A 2PBH_A 3PBH_A.
Probab=97.43 E-value=0.00019 Score=43.30 Aligned_cols=36 Identities=31% Similarity=0.403 Sum_probs=23.5
Q ss_pred HHHHHHHhhCCCCceEEecccCCCCCHHHHHHHhcCCCC
Q 048025 38 LEYIGKANKEGNRTYKLGTNEFSDLTNEEFRASYTGYNT 76 (246)
Q Consensus 38 ~~~I~~~N~~~~~~~~~g~n~fsD~t~~E~~~~~~~~~~ 76 (246)
-++|+.+|+. +.+|++|.| |.+.+.++++++ +|..+
T Consensus 3 de~I~~IN~~-~~tWkAG~N-F~~~~~~~ik~L-lGv~~ 38 (41)
T PF08127_consen 3 DEFIDYINSK-NTTWKAGRN-FENTSIEYIKRL-LGVLP 38 (41)
T ss_dssp HHHHHHHHHC-T-SEEE-----SSB-HHHHHHC-S-B-T
T ss_pred HHHHHHHHcC-CCcccCCCC-CCCCCHHHHHHH-cCCCC
Confidence 3679999997 599999999 899999999887 56543
No 23
>COG3579 PepC Aminopeptidase C [Amino acid transport and metabolism]
Probab=94.90 E-value=0.053 Score=47.53 Aligned_cols=75 Identities=20% Similarity=0.296 Sum_probs=46.8
Q ss_pred cccCcCCCcchHHHHHHHHHHHHHHHhc-CCCccCChHHHh----------------hcCC------------CCCCCCC
Q 048025 113 HIKDQGQTGSSWAFSAVAAVEGITQITS-RKLIELSGQQLV----------------DCST------------DNHGCSG 163 (246)
Q Consensus 113 ~v~~Qg~CGsCwAfa~~~~le~~~~i~~-~~~~~lS~q~l~----------------dC~~------------~~~gC~G 163 (246)
||.||...|-||.||+...+-..+.-+- -+.+.||..++. .-.. ...-=+|
T Consensus 59 ~vtNQk~SGRCWmFAAlNtfRhk~~~el~le~fElSQaytfFwDKlEKaN~FleqIi~tadq~ldsRlv~~LL~~PqqDG 138 (444)
T COG3579 59 KVTNQKQSGRCWMFAALNTFRHKLISELKLEDFELSQAYTFFWDKLEKANWFLEQIIETADQELDSRLVSFLLATPQQDG 138 (444)
T ss_pred ccccccccceehHHHHHHHHHHHHHHhcCcceeehhhHHHHHHHHHHHhhHHHHHHHhhcccchHHHHHHHHHcCccccC
Confidence 8999999999999999887643322111 123455544332 1111 0233467
Q ss_pred CcchHHHHHHHHhcCCCCCcCCCCC
Q 048025 164 GLMDKAFEYIIENKGLASEADYPYR 188 (246)
Q Consensus 164 G~~~~a~~y~~~~~Gi~~e~~yPy~ 188 (246)
|-..-...-+.++ |+++-++||=+
T Consensus 139 GQwdM~v~l~eKY-GvVpK~~ypes 162 (444)
T COG3579 139 GQWDMFVSLFEKY-GVVPKSVYPES 162 (444)
T ss_pred chHHHHHHHHHHh-CCCchhhcccc
Confidence 7666566666665 99999999954
No 24
>KOG4128 consensus Bleomycin hydrolases and aminopeptidases of cysteine protease family [Amino acid transport and metabolism]
Probab=92.13 E-value=0.22 Score=43.67 Aligned_cols=77 Identities=18% Similarity=0.252 Sum_probs=53.1
Q ss_pred cccccCcCCCcchHHHHHHHHHHHHHHHh-cCCCccCChHHHh--------------------hcCCC----------CC
Q 048025 111 VTHIKDQGQTGSSWAFSAVAAVEGITQIT-SRKLIELSGQQLV--------------------DCSTD----------NH 159 (246)
Q Consensus 111 v~~v~~Qg~CGsCwAfa~~~~le~~~~i~-~~~~~~lS~q~l~--------------------dC~~~----------~~ 159 (246)
-+||.+|..-|-||.|+.+..+---+..+ +-..+.||..+|. .|.+. +.
T Consensus 62 ~~pvtnqkssGrcWift~ln~lrl~~~~kLnl~eFElSqayLFFwdKlErcnyFL~~vvd~a~r~ep~DgRlvq~Ll~nP 141 (457)
T KOG4128|consen 62 RQPVTNQKSSGRCWIFTGLNLLRLEMDRKLNLPEFELSQAYLFFWDKLERCNYFLWTVVDLAMRCEPLDGRLVQNLLKNP 141 (457)
T ss_pred CcccccCcCCCceEEEechhHHHHHHHhcCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccHHHHHHHhCC
Confidence 46999999999999999988763322222 1234677777665 13221 34
Q ss_pred CCCCCcchHHHHHHHHhcCCCCCcCCCCC
Q 048025 160 GCSGGLMDKAFEYIIENKGLASEADYPYR 188 (246)
Q Consensus 160 gC~GG~~~~a~~y~~~~~Gi~~e~~yPy~ 188 (246)
.=+||...--++-++++ |+.+-.|||-.
T Consensus 142 ~~DGGqw~MfvNlVkKY-GviPKkcy~~s 169 (457)
T KOG4128|consen 142 VPDGGQWQMFVNLVKKY-GVIPKKCYLHS 169 (457)
T ss_pred CCCCchHHHHHHHHHHh-CCCcHHhcccc
Confidence 44688777777777776 99999999843
No 25
>cd00585 Peptidase_C1B Peptidase C1B subfamily (MEROPS database nomenclature); composed of eukaryotic bleomycin hydrolases (BH) and bacterial aminopeptidases C (pepC). The proteins of this subfamily contain a large insert relative to the C1A peptidase (papain) subfamily. BH is a cysteine peptidase that detoxifies bleomycin by hydrolysis of an amide group. It acts as a carboxypeptidase on its C-terminus to convert itself into an aminopeptidase and peptide ligase. BH is found in all tissues in mammals as well as in many other eukaryotes. Bleomycin, a glycopeptide derived from the fungus Streptomyces verticullus, is an effective anticancer drug due to its ability to induce DNA strand breaks. Human BH is the major cause of tumor cell resistance to bleomycin chemotherapy, and is also genetically linked to Alzheimer's disease. In addition to its peptidase activity, the yeast BH (Gal6) binds DNA and acts as a repressor in the Gal4 regulatory system. BH forms a hexameric ring barrel structure w
Probab=66.49 E-value=9.4 Score=35.27 Aligned_cols=37 Identities=24% Similarity=0.308 Sum_probs=26.8
Q ss_pred EEeeeEECCcChHHHHH----HHHh-cCCeEEEEEcCcccccccCCC
Q 048025 205 TISKYEDLPQGDEQALL----QAVS-KQPVSVCVEASGRAFHFYKSG 246 (246)
Q Consensus 205 ~i~~~~~~~~~~~~~i~----~~l~-~GPv~v~i~v~~~~f~~Y~sG 246 (246)
....|..++ .+.|+ ++|. .+||.++++|. .|+.|++|
T Consensus 285 ~~~~y~Nvp---~d~l~~~~~~~L~~g~pV~~g~Dv~--~~~~~k~G 326 (437)
T cd00585 285 RPILYLNVP---MDVLKKAAIAQLKDGEPVWFGCDVG--KFSDRKSG 326 (437)
T ss_pred ccceEEecC---HHHHHHHHHHHHhcCCCEEEEEEcC--hhhccCCc
Confidence 445677776 44454 4566 67999999997 57789987
No 26
>KOG2735 consensus Phosphatidylserine synthase [Lipid transport and metabolism]
Probab=39.75 E-value=20 Score=32.43 Aligned_cols=21 Identities=29% Similarity=0.463 Sum_probs=19.6
Q ss_pred chHHHHHHHHHHHHHHHhcCC
Q 048025 122 SSWAFSAVAAVEGITQITSRK 142 (246)
Q Consensus 122 sCwAfa~~~~le~~~~i~~~~ 142 (246)
-||.|+++.++|..+|||.|.
T Consensus 374 qcWv~~aI~~~El~IciKfg~ 394 (466)
T KOG2735|consen 374 QCWVFLAICALELLICIKFGS 394 (466)
T ss_pred hHHHHHHHHHHHhhhheeeCC
Confidence 599999999999999999886
No 27
>PF05391 Lsm_interact: Lsm interaction motif; InterPro: IPR008669 This short motif is found at the C terminus of Prp24 proteins and probably interacts with the Lsm proteins to promote U4/U6 formation [].
Probab=38.22 E-value=26 Score=17.72 Aligned_cols=12 Identities=25% Similarity=0.601 Sum_probs=9.5
Q ss_pred CCCHHHHHHHhc
Q 048025 61 DLTNEEFRASYT 72 (246)
Q Consensus 61 D~t~~E~~~~~~ 72 (246)
-++.++|+++++
T Consensus 9 p~SNddFrkmfl 20 (21)
T PF05391_consen 9 PKSNDDFRKMFL 20 (21)
T ss_pred ccchHHHHHHHc
Confidence 468889998875
No 28
>PF13529 Peptidase_C39_2: Peptidase_C39 like family; PDB: 3ERV_A.
Probab=36.19 E-value=1.7e+02 Score=21.21 Aligned_cols=20 Identities=25% Similarity=0.381 Sum_probs=14.6
Q ss_pred ChHHHHHHHHhc-CCeEEEEE
Q 048025 215 GDEQALLQAVSK-QPVSVCVE 234 (246)
Q Consensus 215 ~~~~~i~~~l~~-GPv~v~i~ 234 (246)
.+.+.|++.|.. .||++.+.
T Consensus 87 ~~~~~i~~~i~~G~Pvi~~~~ 107 (144)
T PF13529_consen 87 ASFDDIKQEIDAGRPVIVSVN 107 (144)
T ss_dssp S-HHHHHHHHHTT--EEEEEE
T ss_pred CcHHHHHHHHHCCCcEEEEEE
Confidence 467999999985 59999996
No 29
>PF04214 DUF411: Protein of unknown function, DUF; InterPro: IPR007332 The function of the members of this bacterial protein family is unknown. Some members may be involved in conferring cation resistance.
Probab=33.17 E-value=1.5e+02 Score=19.93 Aligned_cols=36 Identities=8% Similarity=0.096 Sum_probs=25.7
Q ss_pred CceEEEeeeEECCcChHHHHHHHHhcCCeEEEEEcC
Q 048025 201 AVAATISKYEDLPQGDEQALLQAVSKQPVSVCVEAS 236 (246)
Q Consensus 201 ~~~~~i~~~~~~~~~~~~~i~~~l~~GPv~v~i~v~ 236 (246)
+....+.+|..-..--.++|++.|...|-+.++.|.
T Consensus 26 CHTa~v~gy~iEGHVPa~~I~~lL~e~P~~~GlavP 61 (70)
T PF04214_consen 26 CHTAVVGGYVIEGHVPADDIKRLLAEKPDARGLAVP 61 (70)
T ss_pred ccEEEECCEEEEccCCHHHHHHHHhcCCCceEEeCC
Confidence 344566677654333478899999988989898875
No 30
>COG4871 Uncharacterized protein conserved in archaea [Function unknown]
Probab=30.19 E-value=29 Score=27.48 Aligned_cols=16 Identities=25% Similarity=0.447 Sum_probs=9.9
Q ss_pred cccCcCCCc--chHHHHH
Q 048025 113 HIKDQGQTG--SSWAFSA 128 (246)
Q Consensus 113 ~v~~Qg~CG--sCwAfa~ 128 (246)
|-.|-|.|| +|+|||.
T Consensus 135 P~tNCg~CGEqtCmaFAi 152 (193)
T COG4871 135 PQTNCGKCGEQTCMAFAI 152 (193)
T ss_pred CCCccccchhHHHHHHHH
Confidence 334555665 6889864
No 31
>PHA02094 hypothetical protein
Probab=27.49 E-value=89 Score=20.80 Aligned_cols=40 Identities=20% Similarity=0.289 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHH-HHHHhhCCCCceEEecccCCCCCHHH
Q 048025 26 EKAMRLNIFKQNLEY-IGKANKEGNRTYKLGTNEFSDLTNEE 66 (246)
Q Consensus 26 e~~~r~~~F~~n~~~-I~~~N~~~~~~~~~g~n~fsD~t~~E 66 (246)
....|+..|.+++.. |-+..-- ..+|.+..|.|.|-..-|
T Consensus 38 k~n~~ye~~~ksig~m~g~~hpt-aktwvakpnpfrdgvlve 78 (81)
T PHA02094 38 KLNEKYEFFAKSVGAMIGELHPT-AKTWVAKPNPFRDGVLVE 78 (81)
T ss_pred HHHHHHHHHHHHHHHHhcccCcc-ccccccCCCCCccceEEe
Confidence 356777888887754 3333322 278999999998855433
No 32
>KOG4702 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.35 E-value=2.5e+02 Score=18.91 Aligned_cols=31 Identities=16% Similarity=0.200 Sum_probs=22.4
Q ss_pred HHHHHHHHHhCCccCCHHHHHHHHHHHHHHHH
Q 048025 8 AKHEQWMAQHGRTYKDELEKAMRLNIFKQNLE 39 (246)
Q Consensus 8 ~~f~~f~~~~~k~Y~~~~e~~~r~~~F~~n~~ 39 (246)
.-|++|+..|++.-.++ |...|..-|++-++
T Consensus 29 e~Fee~v~~~krel~pp-e~~~~~EE~~~~lR 59 (77)
T KOG4702|consen 29 EIFEEFVRGYKRELSPP-EATKRKEEYENFLR 59 (77)
T ss_pred HHHHHHHHhccccCCCh-HHHhhHHHHHHHHH
Confidence 46899999999988554 66677666655444
Done!