BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 048027
         (735 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1ZAN|H Chain H, Crystal Structure Of Anti-Ngf Ad11 Fab
          Length = 224

 Score = 30.4 bits (67), Expect = 3.3,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 25/52 (48%)

Query: 504 RSTNKAAFQHQMMLLQCHNRDCYQWLIDRGCHTWALYCMPEWAKSTDITISA 555
           R T+K+    +M  LQ  +   Y    D G  +  LY M  W + T +T+S+
Sbjct: 71  RDTSKSQVFLKMHSLQSEDTATYYCARDGGYSSSTLYAMDAWGQGTTVTVSS 122


>pdb|1OEN|A Chain A, Phosphoenolpyruvate Carboxykinase
          Length = 540

 Score = 30.0 bits (66), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 20/85 (23%), Positives = 33/85 (38%)

Query: 145 NDGSALENSWEGYEDYLIQNFVNKKNERSSIDGFLFRKGGANGITMELGQRFKDEFHFRR 204
           +DGS  EN+   Y  Y I N V   ++       +F    A G+   + +   D+  +  
Sbjct: 324 DDGSKTENTRVSYPIYHIDNIVKPVSKAGHATKVIFLTADAFGVLPPVSRLTADQTQYHF 383

Query: 205 AVEIQAMRDGIKLCVMENTSTLISC 229
                A   G +  + E T T  +C
Sbjct: 384 LSGFTAAAAGTERGITEPTPTFSAC 408


>pdb|2PY7|X Chain X, Crystal Structure Of E. Coli Phosphoenolpyruvate
           Carboxykinase Mutant Lys213ser Complexed With
           Atp-mg2+-mn2+
          Length = 540

 Score = 29.6 bits (65), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 20/85 (23%), Positives = 33/85 (38%)

Query: 145 NDGSALENSWEGYEDYLIQNFVNKKNERSSIDGFLFRKGGANGITMELGQRFKDEFHFRR 204
           +DGS  EN+   Y  Y I N V   ++       +F    A G+   + +   D+  +  
Sbjct: 324 DDGSKTENTRVSYPIYHIDNIVKPVSKAGHATKVIFLTADAFGVLPPVSRLTADQTQYHF 383

Query: 205 AVEIQAMRDGIKLCVMENTSTLISC 229
                A   G +  + E T T  +C
Sbjct: 384 LSGFTAKLAGTERGITEPTPTFSAC 408


>pdb|1K3C|A Chain A, Phosphoenolpyruvate Carboxykinase In Complex With Adp,
           Alf3 And Pyruvate
 pdb|1K3D|A Chain A, Phosphoenolpyruvate Carboxykinase In Complex With Adp And
           Alf3
 pdb|1OS1|A Chain A, Structure Of Phosphoenolpyruvate Carboxykinase Complexed
           With Atp,Mg, Ca And Pyruvate.
 pdb|2OLQ|A Chain A, How Does An Enzyme Recognize Co2?
 pdb|2OLR|A Chain A, Crystal Structure Of Escherichia Coli Phosphoenolpyruvate
           Carboxykinase Complexed With Carbon Dioxide, Mg2+, Atp
 pdb|1AQ2|A Chain A, Phosphoenolpyruvate Carboxykinase
 pdb|2PXZ|X Chain X, E. Coli Phosphoenolpyruvate Carboxykinase (Pepck)
           Complexed With Atp, Mg2+, Mn2+, Carbon Dioxide And
           Oxaloacetate
          Length = 540

 Score = 29.6 bits (65), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 20/85 (23%), Positives = 33/85 (38%)

Query: 145 NDGSALENSWEGYEDYLIQNFVNKKNERSSIDGFLFRKGGANGITMELGQRFKDEFHFRR 204
           +DGS  EN+   Y  Y I N V   ++       +F    A G+   + +   D+  +  
Sbjct: 324 DDGSKTENTRVSYPIYHIDNIVKPVSKAGHATKVIFLTADAFGVLPPVSRLTADQTQYHF 383

Query: 205 AVEIQAMRDGIKLCVMENTSTLISC 229
                A   G +  + E T T  +C
Sbjct: 384 LSGFTAKLAGTERGITEPTPTFSAC 408


>pdb|1AYL|A Chain A, Phosphoenolpyruvate Carboxykinase
          Length = 541

 Score = 29.6 bits (65), Expect = 7.1,   Method: Compositional matrix adjust.
 Identities = 20/85 (23%), Positives = 33/85 (38%)

Query: 145 NDGSALENSWEGYEDYLIQNFVNKKNERSSIDGFLFRKGGANGITMELGQRFKDEFHFRR 204
           +DGS  EN+   Y  Y I N V   ++       +F    A G+   + +   D+  +  
Sbjct: 324 DDGSKTENTRVSYPIYHIDNIVKPVSKAGHATKVIFLTADAFGVLPPVSRLTADQTQYHF 383

Query: 205 AVEIQAMRDGIKLCVMENTSTLISC 229
                A   G +  + E T T  +C
Sbjct: 384 LSGFTAKLAGTERGITEPTPTFSAC 408


>pdb|2XQN|T Chain T, Complex Of The 2nd And 3rd Lim Domains Of Tes With The
           Evh1 Domain Of Mena And The N-Terminal Domain Of
           Actin-Like Protein Arp7a
          Length = 126

 Score = 29.3 bits (64), Expect = 8.9,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 32/70 (45%), Gaps = 7/70 (10%)

Query: 591 LAGWDWVHDSITPTTRQQITQN---VIEGDGWNIHSGADPKILTVTMNGLSFVVNKELAI 647
           LAG  +V  +  P  +    +N   V +G     H+  DP++  VT N  S+  + E  +
Sbjct: 40  LAGEIYVMVNDKPVCKPCYVKNHAVVCQG----CHNAIDPEVQRVTYNNFSWHASTECFL 95

Query: 648 CSCGLWQLSG 657
           CSC    L G
Sbjct: 96  CSCCSKCLIG 105


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.322    0.137    0.443 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,351,934
Number of Sequences: 62578
Number of extensions: 997261
Number of successful extensions: 2177
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 2169
Number of HSP's gapped (non-prelim): 9
length of query: 735
length of database: 14,973,337
effective HSP length: 106
effective length of query: 629
effective length of database: 8,340,069
effective search space: 5245903401
effective search space used: 5245903401
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)