BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 048027
         (735 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|C6DGE8|PCKA_PECCP Phosphoenolpyruvate carboxykinase [ATP] OS=Pectobacterium
           carotovorum subsp. carotovorum (strain PC1) GN=pckA PE=3
           SV=1
          Length = 539

 Score = 34.7 bits (78), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 26/93 (27%), Positives = 38/93 (40%), Gaps = 2/93 (2%)

Query: 139 LSDSTE--NDGSALENSWEGYEDYLIQNFVNKKNERSSIDGFLFRKGGANGITMELGQRF 196
           L+D T   NDGS  EN+   Y  Y IQN V   ++       +F    A G+   + +  
Sbjct: 315 LADGTVDFNDGSKTENTRVSYPIYHIQNIVKPVSKAGHATKVIFLTADAFGVLPPVSRLT 374

Query: 197 KDEFHFRRAVEIQAMRDGIKLCVMENTSTLISC 229
            D+  +       A   G +  V E T T  +C
Sbjct: 375 SDQTQYHFLSGFTAKLAGTERGVTEPTPTFSAC 407


>sp|O94533|ELP2_SCHPO Elongator complex protein 2 OS=Schizosaccharomyces pombe (strain
           972 / ATCC 24843) GN=elp2 PE=3 SV=1
          Length = 760

 Score = 34.3 bits (77), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 26/82 (31%), Positives = 39/82 (47%), Gaps = 8/82 (9%)

Query: 180 FRKGGANGITMELGQRFKDEFHFRRAVEIQAMRDGIKLCVMENTSTLISCECSNLMC--- 236
           F   GA+  T+ L Q  ++ F   + +E++A  +   LCV EN   L+ C CSN  C   
Sbjct: 70  FILSGASDKTLRLWQLEEEYFTCIKTIELEATVNC--LCVNEN---LVVCGCSNSSCIVY 124

Query: 237 DWKVSAAKVRKGNVFVLKEIIP 258
            W      + + + F   EIIP
Sbjct: 125 SWNAEQRNLTEISRFTCSEIIP 146


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.322    0.137    0.443 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 286,311,032
Number of Sequences: 539616
Number of extensions: 12221681
Number of successful extensions: 24719
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 24713
Number of HSP's gapped (non-prelim): 7
length of query: 735
length of database: 191,569,459
effective HSP length: 125
effective length of query: 610
effective length of database: 124,117,459
effective search space: 75711649990
effective search space used: 75711649990
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 65 (29.6 bits)