BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048028
(592 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCJ|B Chain B, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCL|A Chain A, Crystal Structure Of Abc Transporter With Complex (Aq_297)
From Aquifex Aeolicus Vf5
Length = 224
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 51/180 (28%), Positives = 84/180 (46%), Gaps = 23/180 (12%)
Query: 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLESKLLKIIS-------AYVMQD 53
++I+GASG+GK+TL+ L + +G V L G+ ++ K +S +V Q
Sbjct: 33 VSIIGASGSGKSTLLYILG--LLDAPTEGKVFLEGKEVDYTNEKELSLLRNRKLGFVFQF 90
Query: 54 DLLFPMLTVEETLMFAAEFRLPRSVTKTKKQERVEALINQLGLRSAAKTFIGDXXXXX-- 111
L P LT E ++ L K + +ER E L+++LGL GD
Sbjct: 91 HYLIPELTALENVIVPM---LKMGKPKKEAKERGEYLLSELGL--------GDKLSRKPY 139
Query: 112 -XXXXXXXXXXXXXHIIHDPILLFLDEPTSGLDSTSAFMVVNVLQRIAKSGSIVIMSIHQ 170
+ ++PILLF DEPT LDS + V+++ +I + G+ ++M H+
Sbjct: 140 ELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHE 199
>pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
pdb|3FVQ|B Chain B, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
Length = 359
Score = 52.4 bits (124), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 43/146 (29%), Positives = 71/146 (48%), Gaps = 15/146 (10%)
Query: 3 ILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLESKLLKIIS-----AYVMQDDLLF 57
I+GASG GKTTL+ LAG + +S G ++L+G+ + SK + Y++Q+ +LF
Sbjct: 35 IIGASGCGKTTLLRCLAGFEQPDS--GEISLSGKTIFSKNTNLPVRERRLGYLVQEGVLF 92
Query: 58 PMLTVEETLMFAAEFRLPRSVTKTKKQERVEALINQLGLRSAAKTFIGDXXXXXXXXXXX 117
P LTV + + R+ ++++R+EA++ G+ A + +
Sbjct: 93 PHLTVYRNIAYGLGNGKGRTA---QERQRIEAMLELTGISELAGRYPHELSGGQQQRAAL 149
Query: 118 XXXXXXXHIIHDPILLFLDEPTSGLD 143
DP L+ LDEP S LD
Sbjct: 150 ARALAP-----DPELILLDEPFSALD 170
>pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From
Thermotoga Maritima
Length = 240
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 48/176 (27%), Positives = 79/176 (44%), Gaps = 26/176 (14%)
Query: 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLESKLLKIIS----AYVMQDDLL 56
+ ++GA+GAGKTT + A+AG + + +G + NG+ + +K +I+ A V + +
Sbjct: 35 VTLIGANGAGKTTTLSAIAGLVRAQ--KGKIIFNGQDITNKPAHVINRXGIALVPEGRRI 92
Query: 57 FPMLTVEETLMFAAEFRLPRSVTKTKKQ------ERVEALINQLGLRSAAKTFIGDXXXX 110
FP LTV E L A R + K + R++ + QLG T G
Sbjct: 93 FPELTVYENLXXGAYNRKDKEGIKRDLEWIFSLFPRLKERLKQLG-----GTLSGGEQQX 147
Query: 111 XXXXXXXXXXXXXXHIIHDPILLFLDEPTSGLDSTSAFMVVNVLQRIAKSGSIVIM 166
+ P LL DEP+ GL V V+Q+I + G+ +++
Sbjct: 148 LAIGRA---------LXSRPKLLXXDEPSLGLAPILVSEVFEVIQKINQEGTTILL 194
>pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|C Chain C, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 76/172 (44%), Gaps = 12/172 (6%)
Query: 3 ILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLESKLLKIISAYVMQD-DLLFPMLT 61
++G +G+GKTTL+ LAG + + G + L+G + LL+ YV Q+ T
Sbjct: 42 VVGKNGSGKTTLLKILAGLL---AAAGEIFLDGSPADPFLLRKNVGYVFQNPSSQIIGAT 98
Query: 62 VEETLMFAAEFRLPRSVTKTKKQERVEALINQLGLRSAAKTFIGDXXXXXXXXXXXXXXX 121
VEE + F+ E + +++ ++R++ ++ +GL A
Sbjct: 99 VEEDVAFSLEIM---GLDESEMRKRIKKVLELVGLSGLAAA-----DPLNLSGGQKQRLA 150
Query: 122 XXXHIIHDPILLFLDEPTSGLDSTSAFMVVNVLQRIAKSGSIVIMSIHQPSY 173
+ D L LDEP S LD S + VL+ + G +I+ H+ Y
Sbjct: 151 IASMLARDTRFLALDEPVSMLDPPSQREIFQVLESLKNEGKGIILVTHELEY 202
>pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter
Length = 1321
Score = 48.9 bits (115), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 46/170 (27%), Positives = 78/170 (45%), Gaps = 9/170 (5%)
Query: 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNG-EVLESKL--LKIISAYVMQDDLLF 57
+A++G+SG GK+T++ L + L+G +T++G +V + L L+ A V Q+ LF
Sbjct: 447 VALVGSSGCGKSTIISLLLRYYD--VLKGKITIDGVDVRDINLEFLRKNVAVVSQEPALF 504
Query: 58 PMLTVEETLMFAAEFRLPRSVTKTKKQERVEALINQLGLRSAAKTFIGDXXXXXXXXXXX 117
T+EE + E + K E I L + T +GD
Sbjct: 505 N-CTIEENISLGKEGITREEMVAACKMANAEKFIKTL--PNGYNTLVGDRGTQLSGGQKQ 561
Query: 118 XXXXXXXHIIHDPILLFLDEPTSGLDSTSAFMVVNVLQRIAKSGSIVIMS 167
++ +P +L LDE TS LD+ S +V L + AK + +I++
Sbjct: 562 RIAIARA-LVRNPKILLLDEATSALDAESEGIVQQALDKAAKGRTTIIIA 610
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 50/180 (27%), Positives = 83/180 (46%), Gaps = 22/180 (12%)
Query: 1 MAILGASGAGKTTLM-------DALAGRIEKESLQGAVTLNGEVLESKLLKIISAYVMQD 53
+A++G SG GK+T++ D L G I + + TLN E S++ A V Q+
Sbjct: 1108 LALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSE-IKTLNPEHTRSQI-----AIVSQE 1161
Query: 54 DLLFPMLTVEETLMFAAEFRLPRSVTKTKKQE--RVEALINQLG-LRSAAKTFIGDXXXX 110
LF ++ E +++ + P SVT + +E R+ + N + L +T +GD
Sbjct: 1162 PTLFD-CSIAENIIYGLD---PSSVTMAQVEEAARLANIHNFIAELPEGFETRVGDRGTQ 1217
Query: 111 XXXXXXXXXXXXXXHIIHDPILLFLDEPTSGLDSTSAFMVVNVLQRIAKSGSIVIMSIHQ 170
++ +P +L LDE TS LD+ S +V L R A+ G I+ H+
Sbjct: 1218 LSGGQKQRIAIARA-LVRNPKILLLDEATSALDTESEKVVQEALDR-AREGRTCIVIAHR 1275
>pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans
pdb|3D31|B Chain B, Modbc From Methanosarcina Acetivorans
Length = 348
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 78/172 (45%), Gaps = 24/172 (13%)
Query: 3 ILGASGAGKTTLMDALAGRIEKESLQGAVTLNG-EVLESKLLKIISAYVMQDDLLFPMLT 61
ILG +GAGKT ++ +AG +S G + L+G +V + K A+V Q+ LFP +
Sbjct: 31 ILGPTGAGKTLFLELIAGFHVPDS--GRILLDGKDVTDLSPEKHDIAFVYQNYSLFPHMN 88
Query: 62 VEETLMFA---AEFRLPRSVTKTKKQERVEALI--NQLGLRSAAKTFIGDXXXXXXXXXX 116
V++ L F + + P+ V T + ++E L+ N L L + +
Sbjct: 89 VKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDRNPLTLSGGEQQRVA----------- 137
Query: 117 XXXXXXXXHIIHDPILLFLDEPTSGLDSTSAFMVVNVLQRIAKSGSIVIMSI 168
++ +P +L LDEP S LD + +L + K + ++ I
Sbjct: 138 -----LARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHI 184
>pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+
pdb|3C41|K Chain K, Abc Protein Artp In Complex With Amp-PnpMG2+
Length = 242
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/179 (23%), Positives = 82/179 (45%), Gaps = 20/179 (11%)
Query: 3 ILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLESK---LLKIIS--AYVMQDDLLF 57
++G SG+GK+T + L + ++ +G + ++G L++K L K+ V Q LF
Sbjct: 34 VIGPSGSGKSTFLRCL--NLLEDFDEGEIIIDGINLKAKDTNLNKVREEVGMVFQRFNLF 91
Query: 58 PMLTVEETLMFAAEFRLPRSVTK---TKKQERVEALINQLGLRSAAKTFIGDXXXXXXXX 114
P +TV + A P V K K + + L++++GL+ A +
Sbjct: 92 PHMTVLNNITLA-----PMKVRKWPREKAEAKAMELLDKVGLKDKAHAY-----PDSLSG 141
Query: 115 XXXXXXXXXXHIIHDPILLFLDEPTSGLDSTSAFMVVNVLQRIAKSGSIVIMSIHQPSY 173
+ +P ++ DEPTS LD V++V++++A G +++ H+ +
Sbjct: 142 GQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMGF 200
>pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLJ|B Chain B, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLK|A Chain A, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|B Chain B, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|C Chain C, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|D Chain D, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OUK|A Chain A, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|B Chain B, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|C Chain C, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|D Chain D, Abc Protein Artp In Complex With Sulphate
pdb|2Q0H|A Chain A, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|2Q0H|B Chain B, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|3C4J|A Chain A, Abc Protein Artp In Complex With Atp-Gamma-S
pdb|3C4J|B Chain B, Abc Protein Artp In Complex With Atp-Gamma-S
Length = 263
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/176 (23%), Positives = 81/176 (46%), Gaps = 20/176 (11%)
Query: 3 ILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLESK---LLKIIS--AYVMQDDLLF 57
++G SG+GK+T + L + ++ +G + ++G L++K L K+ V Q LF
Sbjct: 55 VIGPSGSGKSTFLRCL--NLLEDFDEGEIIIDGINLKAKDTNLNKVREEVGMVFQRFNLF 112
Query: 58 PMLTVEETLMFAAEFRLPRSVTK---TKKQERVEALINQLGLRSAAKTFIGDXXXXXXXX 114
P +TV + A P V K K + + L++++GL+ A +
Sbjct: 113 PHMTVLNNITLA-----PMKVRKWPREKAEAKAMELLDKVGLKDKAHAY-----PDSLSG 162
Query: 115 XXXXXXXXXXHIIHDPILLFLDEPTSGLDSTSAFMVVNVLQRIAKSGSIVIMSIHQ 170
+ +P ++ DEPTS LD V++V++++A G +++ H+
Sbjct: 163 GQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHE 218
>pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (plate Form)
Length = 619
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 44/175 (25%), Positives = 85/175 (48%), Gaps = 14/175 (8%)
Query: 2 AILGASGAGKTTLMDALAGRIEKESLQGAVTLNG---EVLESKLLKIISAYVMQDDLLFP 58
A++G SG+GK+T++ L + S G ++L+G L L+ V Q+ +LF
Sbjct: 405 ALVGPSGSGKSTVLSLLLRLYDPAS--GTISLDGHDIRQLNPVWLRSKIGTVSQEPILFS 462
Query: 59 MLTVEETLMFAAEFRLPRSVTKTKKQERVEALINQLG-LRSAAKTF---IGDXXXXXXXX 114
++ E + + A+ P SVT + Q RV + N + +R+ + F +G+
Sbjct: 463 -CSIAENIAYGADD--PSSVTAEEIQ-RVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGG 518
Query: 115 XXXXXXXXXXHIIHDPILLFLDEPTSGLDSTSAFMVVNVLQRIAKSGSIVIMSIH 169
++ +P +L LDE TS LD+ + ++V L R+ ++++++ H
Sbjct: 519 QKQRIAIARA-LLKNPKILLLDEATSALDAENEYLVQEALDRLMDGRTVLVIAHH 572
>pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G60|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 45/175 (25%), Positives = 80/175 (45%), Gaps = 10/175 (5%)
Query: 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLES---KLLKIISAYVMQDDLLF 57
+A++G SG GK+T + L R+ + L G V+++G+ + + + L+ I V Q+ +LF
Sbjct: 419 VALVGNSGCGKSTTVQ-LMQRL-YDPLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLF 476
Query: 58 PMLTVEETLMFAAEFRLPRSVTKTKKQERVEALINQLGLRSAAKTFIGDXXXXXXXXXXX 117
T+ E + + E + K K+ I + L T +G+
Sbjct: 477 AT-TIAENIRYGREDVTMDEIEKAVKEANAYDFI--MKLPHQFDTLVGERGAQLSGGQKQ 533
Query: 118 XXXXXXXHIIHDPILLFLDEPTSGLDSTSAFMVVNVLQRIAKSGSIVIMSIHQPS 172
++ +P +L LDE TS LD+ S +V L + A+ G I+ H+ S
Sbjct: 534 RIAIARA-LVRNPKILLLDEATSALDTESEAVVQAALDK-AREGRTTIVIAHRLS 586
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 43/179 (24%), Positives = 82/179 (45%), Gaps = 16/179 (8%)
Query: 1 MAILGASGAGKTTLMDALAGRIEK--ESLQGAVTLNGEVLES---KLLKIISAYVMQDDL 55
+A++G+SG GK+T++ L E+ + + G+V L+G+ ++ + L+ V Q+ +
Sbjct: 1062 LALVGSSGCGKSTVVQLL----ERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPI 1117
Query: 56 LFPMLTVEETLMFAAEFRLP--RSVTKTKKQERVEALINQLGLRSAAKTFIGDXXXXXXX 113
LF ++ E + + R+ + + K+ + I+ L T +GD
Sbjct: 1118 LFD-CSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSL--PDKYNTRVGDKGTQLSG 1174
Query: 114 XXXXXXXXXXXHIIHDPILLFLDEPTSGLDSTSAFMVVNVLQRIAKSGSIVIMSIHQPS 172
++ P +L LDE TS LD+ S +V L + A+ G I+ H+ S
Sbjct: 1175 GQKQRIAIARA-LVRQPHILLLDEATSALDTESEKVVQEALDK-AREGRTCIVIAHRLS 1231
>pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G5U|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 45/175 (25%), Positives = 80/175 (45%), Gaps = 10/175 (5%)
Query: 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLES---KLLKIISAYVMQDDLLF 57
+A++G SG GK+T + L R+ + L G V+++G+ + + + L+ I V Q+ +LF
Sbjct: 419 VALVGNSGCGKSTTVQ-LMQRL-YDPLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLF 476
Query: 58 PMLTVEETLMFAAEFRLPRSVTKTKKQERVEALINQLGLRSAAKTFIGDXXXXXXXXXXX 117
T+ E + + E + K K+ I + L T +G+
Sbjct: 477 AT-TIAENIRYGREDVTMDEIEKAVKEANAYDFI--MKLPHQFDTLVGERGAQLSGGQKQ 533
Query: 118 XXXXXXXHIIHDPILLFLDEPTSGLDSTSAFMVVNVLQRIAKSGSIVIMSIHQPS 172
++ +P +L LDE TS LD+ S +V L + A+ G I+ H+ S
Sbjct: 534 RIAIARA-LVRNPKILLLDEATSALDTESEAVVQAALDK-AREGRTTIVIAHRLS 586
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 43/179 (24%), Positives = 82/179 (45%), Gaps = 16/179 (8%)
Query: 1 MAILGASGAGKTTLMDALAGRIEK--ESLQGAVTLNGEVLES---KLLKIISAYVMQDDL 55
+A++G+SG GK+T++ L E+ + + G+V L+G+ ++ + L+ V Q+ +
Sbjct: 1062 LALVGSSGCGKSTVVQLL----ERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPI 1117
Query: 56 LFPMLTVEETLMFAAEFRLP--RSVTKTKKQERVEALINQLGLRSAAKTFIGDXXXXXXX 113
LF ++ E + + R+ + + K+ + I+ L T +GD
Sbjct: 1118 LFD-CSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSL--PDKYNTRVGDKGTQLSG 1174
Query: 114 XXXXXXXXXXXHIIHDPILLFLDEPTSGLDSTSAFMVVNVLQRIAKSGSIVIMSIHQPS 172
++ P +L LDE TS LD+ S +V L + A+ G I+ H+ S
Sbjct: 1175 GQKQRIAIARA-LVRQPHILLLDEATSALDTESEKVVQEALDK-AREGRTCIVIAHRLS 1231
>pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
pdb|2IT1|B Chain B, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
Length = 362
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 47/163 (28%), Positives = 73/163 (44%), Gaps = 15/163 (9%)
Query: 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLN-GEVLESKLLKIISAYVMQDDLLFPM 59
MA+LG SG+GK+TL+ +AG + S G + + +V E V Q+ L+P
Sbjct: 32 MALLGPSGSGKSTLLYTIAGIYKPTS--GKIYFDEKDVTELPPKDRNVGLVFQNWALYPH 89
Query: 60 LTVEETLMFAAEFR-LPRSVTKTKKQERVEAL-INQLGLRSAAKTFIGDXXXXXXXXXXX 117
+TV + + F E R PR K +E + L I++L R + G
Sbjct: 90 MTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLNRYPWQLSGGQQQRVAIARA-- 147
Query: 118 XXXXXXXHIIHDPILLFLDEPTSGLDSTSAFMVVNVLQRIAKS 160
++ +P +L LDEP S LD+ V L+R+ K
Sbjct: 148 --------LVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKE 182
>pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10
pdb|4AYX|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (Rod Form B)
pdb|3ZDQ|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (nucleotide-free Form)
Length = 595
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/173 (24%), Positives = 84/173 (48%), Gaps = 14/173 (8%)
Query: 2 AILGASGAGKTTLMDALAGRIEKESLQGAVTLNG---EVLESKLLKIISAYVMQDDLLFP 58
A++G SG+GK+T++ L + S G ++L+G L L+ V Q+ +LF
Sbjct: 374 ALVGPSGSGKSTVLSLLLRLYDPAS--GTISLDGHDIRQLNPVWLRSKIGTVSQEPILFS 431
Query: 59 MLTVEETLMFAAEFRLPRSVTKTKKQERVEALINQLG-LRSAAKTF---IGDXXXXXXXX 114
++ E + + A+ P SVT + Q RV + N + +R+ + F +G+
Sbjct: 432 -CSIAENIAYGADD--PSSVTAEEIQ-RVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGG 487
Query: 115 XXXXXXXXXXHIIHDPILLFLDEPTSGLDSTSAFMVVNVLQRIAKSGSIVIMS 167
++ +P +L LDE TS LD+ + ++V L R+ ++++++
Sbjct: 488 QKQRIAIARA-LLKNPKILLLDEATSALDAENEYLVQEALDRLMDGRTVLVIA 539
>pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein
(tm0544) From Thermotoga Maritima At 2.10 A Resolution
Length = 256
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 45/171 (26%), Positives = 79/171 (46%), Gaps = 12/171 (7%)
Query: 2 AILGASGAGKTTLMDALAGRIEKESLQGAVTLNGE--VLESKLLKIISAYVMQDDLLFPM 59
++G +GAGKTT + ++ I+ S G VT+ G+ V E ++ + +Y+ ++ +
Sbjct: 45 GLIGPNGAGKTTTLRIISTLIKPSS--GIVTVFGKNVVEEPHEVRKLISYLPEEAGAYRN 102
Query: 60 LTVEETLMFAAEFRLPRSVTKTKKQERVEALINQLGLRSAAKTFIGDXXXXXXXXXXXXX 119
+ E L F A F S ++ +E VE GL K +
Sbjct: 103 MQGIEYLRFVAGFYASSS---SEIEEMVERATEIAGLGEKIKDRV-----STYSKGMVRK 154
Query: 120 XXXXXHIIHDPILLFLDEPTSGLDSTSAFMVVNVLQRIAKSGSIVIMSIHQ 170
++ +P L LDEPTSGLD +A V +L++ ++ G +++S H
Sbjct: 155 LLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHN 205
>pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 52/182 (28%), Positives = 77/182 (42%), Gaps = 25/182 (13%)
Query: 2 AILGASGAGKTTLMDALAGRIEKESLQ-----GAVTLNGEVLESKLLKIISAYVMQDDLL 56
ILG SGAGKTT M +AG + + V NG+++ + I V Q L
Sbjct: 35 GILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDRKI-GMVFQTWAL 93
Query: 57 FPMLTVEETLMFAAEFRLPRSVTKTKKQE---RVEALINQLGLRSAAKTFIGDXXXXXXX 113
+P LT E + F P + K K+E RVE + L + F +
Sbjct: 94 YPNLTAFENIAF------PLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQ 147
Query: 114 XXXXXXXXXXXHIIHDPILLFLDEPTSGLDS---TSAFMVVNVLQRIAKSGSIVIMSIHQ 170
++ DP LL LDEP S LD+ SA +V +Q ++ G +++ H
Sbjct: 148 RVALARA-----LVKDPSLLLLDEPFSNLDARMRDSARALVKEVQ--SRLGVTLLVVSHD 200
Query: 171 PS 172
P+
Sbjct: 201 PA 202
>pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|D Chain D, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|A Chain A, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|B Chain B, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|D Chain D, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 52/182 (28%), Positives = 77/182 (42%), Gaps = 25/182 (13%)
Query: 2 AILGASGAGKTTLMDALAGRIEKESLQ-----GAVTLNGEVLESKLLKIISAYVMQDDLL 56
ILG SGAGKTT M +AG + + V NG+++ + I V Q L
Sbjct: 35 GILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDRKI-GMVFQTWAL 93
Query: 57 FPMLTVEETLMFAAEFRLPRSVTKTKKQE---RVEALINQLGLRSAAKTFIGDXXXXXXX 113
+P LT E + F P + K K+E RVE + L + F +
Sbjct: 94 YPNLTAFENIAF------PLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGGQQQ 147
Query: 114 XXXXXXXXXXXHIIHDPILLFLDEPTSGLDS---TSAFMVVNVLQRIAKSGSIVIMSIHQ 170
++ DP LL LDEP S LD+ SA +V +Q ++ G +++ H
Sbjct: 148 RVALARA-----LVKDPSLLLLDEPFSNLDARMRDSARALVKEVQ--SRLGVTLLVVSHD 200
Query: 171 PS 172
P+
Sbjct: 201 PA 202
>pdb|1G29|1 Chain 1, Malk
pdb|1G29|2 Chain 2, Malk
Length = 372
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 38/151 (25%), Positives = 63/151 (41%), Gaps = 17/151 (11%)
Query: 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLESKLLKIIS-------AYVMQD 53
M +LG SG GKTT + +AG +E +G + + +++ I A V Q
Sbjct: 32 MILLGPSGCGKTTTLRMIAGL--EEPSRGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQS 89
Query: 54 DLLFPMLTVEETLMFAAEFRLPRSVTKTKKQERVEALINQLGLRSAAKTFIGDXXXXXXX 113
L+P +TV + + F + R V + + +RV + LGL T + +
Sbjct: 90 YALYPHMTVYDNIAFPLKL---RKVPRQEIDQRVREVAELLGL-----TELLNRKPRELS 141
Query: 114 XXXXXXXXXXXHIIHDPILLFLDEPTSGLDS 144
I+ P + +DEP S LD+
Sbjct: 142 GGQRQRVALGRAIVRKPQVFLMDEPLSNLDA 172
>pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|D Chain D, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|G Chain G, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|H Chain H, Crystal Structure Of Methionine Importer Metni
Length = 343
Score = 38.1 bits (87), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 43/211 (20%), Positives = 85/211 (40%), Gaps = 16/211 (7%)
Query: 2 AILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLESKLLKIISAYVMQDDLLFPMLT 61
++GASGAGK+TL+ + + + +G+V ++G+ L + ++ Q ++F
Sbjct: 35 GVIGASGAGKSTLIRCV--NLLERPTEGSVLVDGQELTTLSESELTKARRQIGMIFQHFN 92
Query: 62 VEETLMFAAEFRLPRSVTKTKKQE---RVEALINQLGLRSAAKTFIGDXXXXXXXXXXXX 118
+ + LP + T K E RV L++ +GL ++ +
Sbjct: 93 LLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIA 152
Query: 119 XXXXXXHIIHDPILLFLDEPTSGLDSTSAFMVVNVLQRIAKSGSIVIMSIHQPSYXXXXX 178
+ +P +L DE TS LD + ++ +L+ I + + I+ I
Sbjct: 153 RA-----LASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRI 207
Query: 179 XXXXXXXXHGQSVYNETPSNLAQFFAEFGHP 209
+G+ + +T S + F HP
Sbjct: 208 CDCVAVISNGELIEQDTVSEV------FSHP 232
>pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae
pdb|3B5X|B Chain B, Crystal Structure Of Msba From Vibrio Cholerae
Length = 582
Score = 37.7 bits (86), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 81/173 (46%), Gaps = 14/173 (8%)
Query: 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNG-EVLESKL--LKIISAYVMQDDLLF 57
+A++G SG+GK+T+ + + +S G++ L+G +V + KL L+ A V Q+ LF
Sbjct: 372 VALVGRSGSGKSTIANLFTRFYDVDS--GSICLDGHDVRDYKLTNLRRHFALVSQNVHLF 429
Query: 58 PMLTVEETLMFAAEFRLPR-SVTKTKKQERVEALINQL--GLRSAAKTFIGDXXXXXXXX 114
T+ + +AAE R + + +Q I + GL T IG+
Sbjct: 430 ND-TIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGL----DTVIGENGTSLSGG 484
Query: 115 XXXXXXXXXXHIIHDPILLFLDEPTSGLDSTSAFMVVNVLQRIAKSGSIVIMS 167
++ D +L LDE TS LD+ S + L + K+ ++++++
Sbjct: 485 QRQRVAIARA-LLRDAPVLILDEATSALDTESERAIQAALDELQKNKTVLVIA 536
>pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
pdb|2YZ2|B Chain B, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
Length = 266
Score = 37.7 bits (86), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 42/179 (23%), Positives = 69/179 (38%), Gaps = 26/179 (14%)
Query: 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLESKLLK--IISAYVMQDDLLFP 58
+ + G +G+GK+TL+ +AG IE S G V +GE + ++ I A+ +D F
Sbjct: 36 LLVAGNTGSGKSTLLQIVAGLIEPTS--GDVLYDGERKKGYEIRRNIGIAFQYPEDQFFA 93
Query: 59 MLTVEETLMFAAEFRLPRSVTKTKKQERVEALINQLGLRSAAKTFIG-------DXXXXX 111
+E F R + + L A F+G D
Sbjct: 94 ERVFDEVAFAVKNFYPDR---------------DPVPLVKKAMEFVGLDFDSFKDRVPFF 138
Query: 112 XXXXXXXXXXXXXHIIHDPILLFLDEPTSGLDSTSAFMVVNVLQRIAKSGSIVIMSIHQ 170
I+H+P +L LDEP GLD ++ ++++ G VI+ H
Sbjct: 139 LSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHD 197
>pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|B Chain B, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 37.7 bits (86), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 42/179 (23%), Positives = 69/179 (38%), Gaps = 26/179 (14%)
Query: 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLESKLLK--IISAYVMQDDLLFP 58
+ + G +G+GK+TL+ +AG IE S G V +GE + ++ I A+ +D F
Sbjct: 38 LLVAGNTGSGKSTLLQIVAGLIEPTS--GDVLYDGERKKGYEIRRNIGIAFQYPEDQFFA 95
Query: 59 MLTVEETLMFAAEFRLPRSVTKTKKQERVEALINQLGLRSAAKTFIG-------DXXXXX 111
+E F R + + L A F+G D
Sbjct: 96 ERVFDEVAFAVKNFYPDR---------------DPVPLVKKAMEFVGLDFDSFKDRVPFF 140
Query: 112 XXXXXXXXXXXXXHIIHDPILLFLDEPTSGLDSTSAFMVVNVLQRIAKSGSIVIMSIHQ 170
I+H+P +L LDEP GLD ++ ++++ G VI+ H
Sbjct: 141 LSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHD 199
>pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
pdb|1Z47|B Chain B, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
Length = 355
Score = 37.7 bits (86), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 67/146 (45%), Gaps = 13/146 (8%)
Query: 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGE-VLESKLLKIISAYVMQDDLLFPM 59
+ +LG SG+GKTT++ +AG +E+ + +G V + G+ V + K V Q+ LF
Sbjct: 44 VGLLGPSGSGKTTILRLIAG-LERPT-KGDVWIGGKRVTDLPPQKRNVGLVFQNYALFQH 101
Query: 60 LTVEETLMFA-AEFRLPRSVTKTKKQERVEALINQLGLRSAAKTFIGDXXXXXXXXXXXX 118
+TV + + F E R+P K + RV L+ + L S A F +
Sbjct: 102 MTVYDNVSFGLREKRVP----KDEMDARVRELLRFMRLESYANRFPHELSGGQQQRVALA 157
Query: 119 XXXXXXHIIHDPILLFLDEPTSGLDS 144
+ P +L DEP + +D+
Sbjct: 158 RA-----LAPRPQVLLFDEPFAAIDT 178
>pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866
pdb|2HYD|B Chain B, Multidrug Abc Transporter Sav1866
pdb|2ONJ|A Chain A, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|2ONJ|B Chain B, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|4A82|A Chain A, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|B Chain B, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|C Chain C, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|D Chain D, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966
Length = 578
Score = 36.6 bits (83), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 40/170 (23%), Positives = 74/170 (43%), Gaps = 9/170 (5%)
Query: 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLESKL---LKIISAYVMQDDLLF 57
+A +G SG GK+TL++ + + S G + ++G ++ L L+ V QD++LF
Sbjct: 370 VAFVGMSGGGKSTLINLIPRFYDVTS--GQILIDGHNIKDFLTGSLRNQIGLVQQDNILF 427
Query: 58 PMLTVEETLMFAAEFRLPRSVTKTKKQERVEALINQLGLRSAAKTFIGDXXXXXXXXXXX 117
TV+E ++ V + K I + L T +G+
Sbjct: 428 SD-TVKENILLGRPTATDEEVVEAAKMANAHDFI--MNLPQGYDTEVGERGVKLSGGQKQ 484
Query: 118 XXXXXXXHIIHDPILLFLDEPTSGLDSTSAFMVVNVLQRIAKSGSIVIMS 167
+++P +L LDE TS LD S ++ L ++K + +I++
Sbjct: 485 RLSIARI-FLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVA 533
>pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUZ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
Length = 366
Score = 36.6 bits (83), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 42/211 (19%), Positives = 85/211 (40%), Gaps = 16/211 (7%)
Query: 2 AILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLESKLLKIISAYVMQDDLLFPMLT 61
++GASGAGK+TL+ + + + +G+V ++G+ L + ++ Q ++F
Sbjct: 58 GVIGASGAGKSTLIRCV--NLLERPTEGSVLVDGQELTTLSESELTKARRQIGMIFQHFN 115
Query: 62 VEETLMFAAEFRLPRSVTKTKKQE---RVEALINQLGLRSAAKTFIGDXXXXXXXXXXXX 118
+ + LP + T K E RV L++ +GL ++ +
Sbjct: 116 LLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIA 175
Query: 119 XXXXXXHIIHDPILLFLDEPTSGLDSTSAFMVVNVLQRIAKSGSIVIMSIHQPSYXXXXX 178
+ +P +L D+ TS LD + ++ +L+ I + + I+ I
Sbjct: 176 RA-----LASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRI 230
Query: 179 XXXXXXXXHGQSVYNETPSNLAQFFAEFGHP 209
+G+ + +T S + F HP
Sbjct: 231 CDCVAVISNGELIEQDTVSEV------FSHP 255
>pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp-
Binding Protein
Length = 375
Score = 36.2 bits (82), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 38/151 (25%), Positives = 60/151 (39%), Gaps = 17/151 (11%)
Query: 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLESKLLKII-------SAYVMQD 53
+ +LG SG GKTT + +AG +E +G + + ++ + A V Q
Sbjct: 35 LVLLGPSGCGKTTTLRXIAGL--EEPTRGQIYIEDNLVADPEKGVFVPPKERDVAXVFQS 92
Query: 54 DLLFPMLTVEETLMFAAEFRLPRSVTKTKKQERVEALINQLGLRSAAKTFIGDXXXXXXX 113
L+P TV + + F + R V K + +RV + LGL T + +
Sbjct: 93 YALYPHXTVYDNIAFPLKL---RKVPKQEIDKRVREVAEXLGL-----TELLNRKPRELS 144
Query: 114 XXXXXXXXXXXHIIHDPILLFLDEPTSGLDS 144
II P + DEP S LD+
Sbjct: 145 GGQRQRVALGRAIIRRPKVFLXDEPLSNLDA 175
>pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of
The Abc Transporter Complex Cbionq
Length = 275
Score = 36.2 bits (82), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 40/177 (22%), Positives = 73/177 (41%), Gaps = 19/177 (10%)
Query: 2 AILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLESKLLKIIS-----AYVMQD--D 54
AILG +G GK+TL G ++ S G + + + ++ I+ V QD +
Sbjct: 38 AILGGNGVGKSTLFQNFNGILKPSS--GRILFDNKPIDYSRKGIMKLRESIGIVFQDPDN 95
Query: 55 LLFPMLTVEETLMFAAEFRLPRSVTKTKKQERVEALINQLGLRSAAKTFIGDXXXXXXXX 114
LF ++ A +LP + +RV+ + + G+ + D
Sbjct: 96 QLFSASVYQDVSFGAVNMKLPEDEIR----KRVDNALKRTGIE-----HLKDKPTHCLSF 146
Query: 115 XXXXXXXXXXHIIHDPILLFLDEPTSGLDSTSAFMVVNVLQRIAKS-GSIVIMSIHQ 170
++ +P +L LDEPT+GLD ++ +L + K G +I++ H
Sbjct: 147 GQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHD 203
>pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding
Protein
Length = 359
Score = 36.2 bits (82), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 64/152 (42%), Gaps = 23/152 (15%)
Query: 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLESKLL--KIISAY-----VMQD 53
+A+LG SG GKTT + LAG + S GE+ +L I Y V Q+
Sbjct: 32 VALLGPSGCGKTTTLLMLAGIYKPTS--------GEIYFDDVLVNDIPPKYREVGMVFQN 83
Query: 54 DLLFPMLTVEETLMFAAEFRLPRSVTKTKKQERVEALINQLGLRSAAKTFIGDXXXXXXX 113
L+P +TV E + F R ++K + ++RV + +L + + + D
Sbjct: 84 YALYPHMTVFENIAFPLRA---RRISKDEVEKRVVEIARKLLIDN-----LLDRKPTQLS 135
Query: 114 XXXXXXXXXXXHIIHDPILLFLDEPTSGLDST 145
++ P +L DEP S LD+
Sbjct: 136 GGQQQRVALARALVKQPKVLLFDEPLSNLDAN 167
>pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
pdb|3TUJ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
Length = 366
Score = 36.2 bits (82), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 42/211 (19%), Positives = 84/211 (39%), Gaps = 16/211 (7%)
Query: 2 AILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLESKLLKIISAYVMQDDLLFPMLT 61
++GASGAGK+TL+ + + + +G+V ++G+ L + ++ Q +F
Sbjct: 58 GVIGASGAGKSTLIRCV--NLLERPTEGSVLVDGQELTTLSESELTKARRQIGXIFQHFN 115
Query: 62 VEETLMFAAEFRLPRSVTKTKKQE---RVEALINQLGLRSAAKTFIGDXXXXXXXXXXXX 118
+ + LP + T K E RV L++ +GL ++ +
Sbjct: 116 LLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIA 175
Query: 119 XXXXXXHIIHDPILLFLDEPTSGLDSTSAFMVVNVLQRIAKSGSIVIMSIHQPSYXXXXX 178
+ +P +L D+ TS LD + ++ +L+ I + + I+ I
Sbjct: 176 RA-----LASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEXDVVKRI 230
Query: 179 XXXXXXXXHGQSVYNETPSNLAQFFAEFGHP 209
+G+ + +T S + F HP
Sbjct: 231 CDCVAVISNGELIEQDTVSEV------FSHP 255
>pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter.
pdb|2NQ2|D Chain D, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter
Length = 253
Score = 35.8 bits (81), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 50/178 (28%), Positives = 79/178 (44%), Gaps = 27/178 (15%)
Query: 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLES-----KLLKIISAYVMQDDL 55
+A+LG +G GK+TL+D L G +QG + EV +S + AY + D +
Sbjct: 34 LAVLGQNGCGKSTLLDLLLGI--HRPIQGKI----EVYQSIGFVPQFFSSPFAYSVLDIV 87
Query: 56 LFPMLTVEETLMFAAEFRLPRSVTKTKKQERVEALINQLGLRSAAKTFIGDXXXXXXXXX 115
L T T F P+S Q ++AL + L L AK
Sbjct: 88 LMGRSTHINT------FAKPKS---HDYQVAMQAL-DYLNLTHLAKR-----EFTSLSGG 132
Query: 116 XXXXXXXXXHIIHDPILLFLDEPTSGLDSTSAFMVVNVLQRIAKSGSI-VIMSIHQPS 172
I + L+ LDEPTS LD + +V+++L +A+S ++ V+ + HQP+
Sbjct: 133 QRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPN 190
>pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 587
Score = 35.8 bits (81), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 40/181 (22%), Positives = 80/181 (44%), Gaps = 21/181 (11%)
Query: 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLESKLLKIISAY---VMQDDLLF 57
+A+LG +G+GK+TLM+ + I+ E +G V ++ + + LK + + V Q+ +LF
Sbjct: 372 VAVLGETGSGKSTLMNLIPRLIDPE--RGRVEVDELDVRTVKLKDLRGHISAVPQETVLF 429
Query: 58 PMLTVEETLMFAAEFRLPRSVTKTKKQERVEALINQL------GLRSAAKTFIGDXXXXX 111
T++E L + E + + K ++ I L + + F G
Sbjct: 430 SG-TIKENLKWGREDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRL 488
Query: 112 XXXXXXXXXXXXXHIIHDPILLFLDEPTSGLDSTSAFMVVNVLQRIAKSGSIVIMSIHQP 171
++ P +L LD+ TS +D + +++ L+R K + I++ P
Sbjct: 489 SIARA---------LVKKPKVLILDDCTSSVDPITEKRILDGLKRYTKGCTTFIITQKIP 539
Query: 172 S 172
+
Sbjct: 540 T 540
>pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From
Salmonella Typhimurium
Length = 262
Score = 35.4 bits (80), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 26/42 (61%)
Query: 129 DPILLFLDEPTSGLDSTSAFMVVNVLQRIAKSGSIVIMSIHQ 170
+P +L DEPTS LD V+ ++Q++A+ G +++ H+
Sbjct: 171 EPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHE 212
>pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|B Chain B, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|F Chain F, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|G Chain G, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
Length = 240
Score = 35.4 bits (80), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 39/167 (23%), Positives = 77/167 (46%), Gaps = 13/167 (7%)
Query: 3 ILGASGAGKTTLMDALAGRIEKESLQGAVTLNG-EVLESKLLKIISAYVMQDDLLFPMLT 61
+LG +GAGK+ ++ +AG ++ + +G V LNG ++ + +V QD LFP L+
Sbjct: 29 LLGPTGAGKSVFLELIAGIVKPD--RGEVRLNGADITPLPPERRGIGFVPQDYALFPHLS 86
Query: 62 VEETLMFAAEFRLPRSVTKTKKQERVEALINQLGLRSAAKTFIGDXXXXXXXXXXXXXXX 121
V + + R+V + ++ RV + +LG+ + D
Sbjct: 87 VYRNIAYGL-----RNVERVERDRRVREMAEKLGI-----AHLLDRKPARLSGGERQRVA 136
Query: 122 XXXHIIHDPILLFLDEPTSGLDSTSAFMVVNVLQRIAKSGSIVIMSI 168
++ P LL LDEP S +D + +++ L+ + + + I+ +
Sbjct: 137 LARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHV 183
>pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
pdb|1L2T|B Chain B, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
Length = 235
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 36/177 (20%), Positives = 86/177 (48%), Gaps = 14/177 (7%)
Query: 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNG----EVLESKLLKIIS---AYVMQD 53
++I+G SG+GK+T+++ + G ++K + +G V ++ ++ + +L KI +V Q
Sbjct: 34 VSIMGPSGSGKSTMLNII-GCLDKPT-EGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQ 91
Query: 54 DLLFPMLTVEETLMFAAEFRLPRSVTKTKKQERVEALINQLGLRSAAKTFIGDXXXXXXX 113
L P+LT E + F+ +++ ++++R + L + + F +
Sbjct: 92 FNLIPLLTALENVELPLIFKYRGAMSGEERRKRA---LECLKMAELEERF-ANHKPNQLS 147
Query: 114 XXXXXXXXXXXHIIHDPILLFLDEPTSGLDSTSAFMVVNVLQRI-AKSGSIVIMSIH 169
+ ++P ++ D+PT LDS + ++ +L+++ + G V++ H
Sbjct: 148 GGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTH 204
>pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex
With Tnp-Adp
Length = 243
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 38/170 (22%), Positives = 74/170 (43%), Gaps = 9/170 (5%)
Query: 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVL---ESKLLKIISAYVMQDDLLF 57
+ I+G SG+GK+TL + E+ G V ++G L + L+ V+QD++L
Sbjct: 34 IGIVGRSGSGKSTLTKLIQRFYIPEN--GQVLIDGHDLALADPNWLRRQVGVVLQDNVLL 91
Query: 58 PMLTVEETLMFAAEFRLPRSVTKTKKQERVEALINQLGLRSAAKTFIGDXXXXXXXXXXX 117
++ + + A V K I++ LR T +G+
Sbjct: 92 NR-SIIDNISLANPGMSVEKVIYAAKLAGAHDFISE--LREGYNTIVGEQGAGLSGGQRQ 148
Query: 118 XXXXXXXHIIHDPILLFLDEPTSGLDSTSAFMVVNVLQRIAKSGSIVIMS 167
++++P +L DE TS LD S +++ + +I K +++I++
Sbjct: 149 RIAIARA-LVNNPKILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIA 197
>pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli
Length = 241
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 38/170 (22%), Positives = 74/170 (43%), Gaps = 9/170 (5%)
Query: 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVL---ESKLLKIISAYVMQDDLLF 57
+ I+G SG+GK+TL + E+ G V ++G L + L+ V+QD++L
Sbjct: 32 IGIVGRSGSGKSTLTKLIQRFYIPEN--GQVLIDGHDLALADPNWLRRQVGVVLQDNVLL 89
Query: 58 PMLTVEETLMFAAEFRLPRSVTKTKKQERVEALINQLGLRSAAKTFIGDXXXXXXXXXXX 117
++ + + A V K I++ LR T +G+
Sbjct: 90 NR-SIIDNISLANPGMSVEKVIYAAKLAGAHDFISE--LREGYNTIVGEQGAGLSGGQRQ 146
Query: 118 XXXXXXXHIIHDPILLFLDEPTSGLDSTSAFMVVNVLQRIAKSGSIVIMS 167
++++P +L DE TS LD S +++ + +I K +++I++
Sbjct: 147 RIAIARA-LVNNPKILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIA 195
>pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp
Bound State
Length = 247
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 38/170 (22%), Positives = 74/170 (43%), Gaps = 9/170 (5%)
Query: 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVL---ESKLLKIISAYVMQDDLLF 57
+ I+G SG+GK+TL + E+ G V ++G L + L+ V+QD++L
Sbjct: 38 IGIVGRSGSGKSTLTKLIQRFYIPEN--GQVLIDGHDLALADPNWLRRQVGVVLQDNVLL 95
Query: 58 PMLTVEETLMFAAEFRLPRSVTKTKKQERVEALINQLGLRSAAKTFIGDXXXXXXXXXXX 117
++ + + A V K I++ LR T +G+
Sbjct: 96 NR-SIIDNISLANPGMSVEKVIYAAKLAGAHDFISE--LREGYNTIVGEQGAGLSGGQRQ 152
Query: 118 XXXXXXXHIIHDPILLFLDEPTSGLDSTSAFMVVNVLQRIAKSGSIVIMS 167
++++P +L DE TS LD S +++ + +I K +++I++
Sbjct: 153 RIAIARA-LVNNPKILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIA 201
>pdb|3OZX|A Chain A, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
pdb|3OZX|B Chain B, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
Length = 538
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 46/183 (25%), Positives = 73/183 (39%), Gaps = 42/183 (22%)
Query: 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLESKLLKIISAYVMQDDLLFPML 60
+ ILG +G GKTT L G I + +G+VT ++L K +I Y
Sbjct: 297 IGILGPNGIGKTTFARILVGEITAD--EGSVTPEKQILSYKPQRIFPNYDG--------- 345
Query: 61 TVEETLMFAAEFRLPRS------VTKTKKQERV-EALINQLGLRSAAKTFIGDXXXXXXX 113
TV++ L A++ L S VTK R+ E+ +N L K +I
Sbjct: 346 TVQQYLENASKDALSTSSWFFEEVTKRLNLHRLLESNVNDLSGGELQKLYIA-------- 397
Query: 114 XXXXXXXXXXXHIIHDPILLFLDEPTSGLDSTSAFMVVNVLQRIAKSGSIVI------MS 167
+ + L LD+P+S LD ++V ++R+ + V +S
Sbjct: 398 ----------ATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLS 447
Query: 168 IHQ 170
IH
Sbjct: 448 IHD 450
>pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|B Chain B, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|C Chain C, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|D Chain D, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
Length = 241
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 38/170 (22%), Positives = 74/170 (43%), Gaps = 9/170 (5%)
Query: 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVL---ESKLLKIISAYVMQDDLLF 57
+ I+G SG+GK+TL + E+ G V ++G L + L+ V+QD++L
Sbjct: 32 IGIVGRSGSGKSTLTKLIQRFYIPEN--GQVLIDGHDLALADPNWLRRQVGVVLQDNVLL 89
Query: 58 PMLTVEETLMFAAEFRLPRSVTKTKKQERVEALINQLGLRSAAKTFIGDXXXXXXXXXXX 117
++ + + A V K I++ LR T +G+
Sbjct: 90 NR-SIIDNISLANPGMSVEKVIYAAKLAGAHDFISE--LREGYNTIVGEQGAGLSGGQRQ 146
Query: 118 XXXXXXXHIIHDPILLFLDEPTSGLDSTSAFMVVNVLQRIAKSGSIVIMS 167
++++P +L DE TS LD S +++ + +I K +++I++
Sbjct: 147 RIAIARA-LVNNPKILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIA 195
>pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The
Abc-Transporter Hlyb In Complex With Adp
pdb|2FGJ|A Chain A, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|B Chain B, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|C Chain C, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|D Chain D, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 38/170 (22%), Positives = 74/170 (43%), Gaps = 9/170 (5%)
Query: 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVL---ESKLLKIISAYVMQDDLLF 57
+ I+G SG+GK+TL + E+ G V ++G L + L+ V+QD++L
Sbjct: 38 IGIVGRSGSGKSTLTKLIQRFYIPEN--GQVLIDGHDLALADPNWLRRQVGVVLQDNVLL 95
Query: 58 PMLTVEETLMFAAEFRLPRSVTKTKKQERVEALINQLGLRSAAKTFIGDXXXXXXXXXXX 117
++ + + A V K I++ LR T +G+
Sbjct: 96 NR-SIIDNISLANPGMSVEKVIYAAKLAGAHDFISE--LREGYNTIVGEQGAGLSGGQRQ 152
Query: 118 XXXXXXXHIIHDPILLFLDEPTSGLDSTSAFMVVNVLQRIAKSGSIVIMS 167
++++P +L DE TS LD S +++ + +I K +++I++
Sbjct: 153 RIAIARA-LVNNPKILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIA 201
>pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
pdb|4G1U|D Chain D, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
Length = 266
Score = 34.3 bits (77), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 73/173 (42%), Gaps = 13/173 (7%)
Query: 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLES---KLLKIISAYVMQ-DDLL 56
+AI+G +GAGK+TL+ L G + G L G+ L S K L A + Q +L
Sbjct: 40 VAIIGPNGAGKSTLLRLLTGYLSPS--HGECHLLGQNLNSWQPKALARTRAVMRQYSELA 97
Query: 57 FPMLTVEETLMFAAEFRLPRSVTKTKKQ-ERVEALINQLGLRSAAKTFIGDXXXXXXXXX 115
FP +V E + R P ++ ++ ++V A + L L A + +
Sbjct: 98 FP-FSVSEVIQMG---RAPYGGSQDRQALQQVMAQTDCLAL--AQRDYRVLSGGEQQRVQ 151
Query: 116 XXXXXXXXXHIIHDPILLFLDEPTSGLDSTSAFMVVNVLQRIAKSGSIVIMSI 168
P LFLDEPTS LD + +L+++ + + + +
Sbjct: 152 LARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCV 204
>pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated
Abc-atpase In Complex With Tnp-adp
Length = 243
Score = 33.9 bits (76), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 37/170 (21%), Positives = 74/170 (43%), Gaps = 9/170 (5%)
Query: 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVL---ESKLLKIISAYVMQDDLLF 57
+ I+G +G+GK+TL + E+ G V ++G L + L+ V+QD++L
Sbjct: 34 IGIVGRAGSGKSTLTKLIQRFYIPEN--GQVLIDGHDLALADPNWLRRQVGVVLQDNVLL 91
Query: 58 PMLTVEETLMFAAEFRLPRSVTKTKKQERVEALINQLGLRSAAKTFIGDXXXXXXXXXXX 117
++ + + A V K I++ LR T +G+
Sbjct: 92 NR-SIIDNISLANPGMSVEKVIYAAKLAGAHDFISE--LREGYNTIVGEQGAGLSGGQRQ 148
Query: 118 XXXXXXXHIIHDPILLFLDEPTSGLDSTSAFMVVNVLQRIAKSGSIVIMS 167
++++P +L DE TS LD S +++ + +I K +++I++
Sbjct: 149 RIAIARA-LVNNPKILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIA 197
>pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
pdb|3TIF|B Chain B, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
Length = 235
Score = 33.9 bits (76), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 36/177 (20%), Positives = 86/177 (48%), Gaps = 14/177 (7%)
Query: 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNG----EVLESKLLKIIS---AYVMQD 53
++I+G SG+GK+T+++ + G ++K + +G V ++ ++ + +L KI +V Q
Sbjct: 34 VSIMGPSGSGKSTMLNII-GCLDKPT-EGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQ 91
Query: 54 DLLFPMLTVEETLMFAAEFRLPRSVTKTKKQERVEALINQLGLRSAAKTFIGDXXXXXXX 113
L P+LT E + F+ +++ ++++R + L + + F +
Sbjct: 92 FNLIPLLTALENVELPLIFKYRGAMSGEERRKRA---LECLKMAELEERF-ANHKPNQLS 147
Query: 114 XXXXXXXXXXXHIIHDPILLFLDEPTSGLDSTSAFMVVNVLQRI-AKSGSIVIMSIH 169
+ ++P ++ D+PT LDS + ++ +L+++ + G V++ H
Sbjct: 148 GGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTH 204
>pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In
Complex With Adp
pdb|2FGK|A Chain A, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|B Chain B, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|C Chain C, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|D Chain D, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 33.5 bits (75), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 37/170 (21%), Positives = 74/170 (43%), Gaps = 9/170 (5%)
Query: 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVL---ESKLLKIISAYVMQDDLLF 57
+ I+G SG+GK+TL + E+ G V ++G L + L+ V+QD++L
Sbjct: 38 IGIVGRSGSGKSTLTKLIQRFYIPEN--GQVLIDGHDLALADPNWLRRQVGVVLQDNVLL 95
Query: 58 PMLTVEETLMFAAEFRLPRSVTKTKKQERVEALINQLGLRSAAKTFIGDXXXXXXXXXXX 117
++ + + A V K I++ LR T +G+
Sbjct: 96 NR-SIIDNISLANPGMSVEKVIYAAKLAGAHDFISE--LREGYNTIVGEQGAGLSGGQRQ 152
Query: 118 XXXXXXXHIIHDPILLFLDEPTSGLDSTSAFMVVNVLQRIAKSGSIVIMS 167
++++P +L D+ TS LD S +++ + +I K +++I++
Sbjct: 153 RIAIARA-LVNNPKILIFDQATSALDYESEHVIMRNMHKICKGRTVIIIA 201
>pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|B Chain B, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|C Chain C, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|D Chain D, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
Length = 260
Score = 33.5 bits (75), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 35/169 (20%), Positives = 75/169 (44%), Gaps = 10/169 (5%)
Query: 2 AILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLES---KLLKIISAYVMQDDLLFP 58
A++G +G+GK+T+ L + E G + + G+ + ++ I V QD +LF
Sbjct: 50 ALVGHTGSGKSTIAKLLYRFYDAE---GDIKIGGKNVNKYNRNSIRSIIGIVPQDTILFN 106
Query: 59 MLTVEETLMFAAEFRLPRSVTKTKKQERVEALINQLGLRSAAKTFIGDXXXXXXXXXXXX 118
T++ +++ V K K ++ I L + T +G+
Sbjct: 107 E-TIKYNILYGKLDATDEEVIKATKSAQLYDFIEALPKK--WDTIVGNKGMKLSGGERQR 163
Query: 119 XXXXXXHIIHDPILLFLDEPTSGLDSTSAFMVVNVLQRIAKSGSIVIMS 167
++ DP ++ DE TS LDS + ++ ++ + K+ +++I++
Sbjct: 164 IAIARC-LLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRKNRTLIIIA 211
>pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette
Length = 235
Score = 33.1 bits (74), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 36/177 (20%), Positives = 79/177 (44%), Gaps = 14/177 (7%)
Query: 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNG----EVLESKLLKIIS---AYVMQD 53
++I G SG+GK+T ++ + G ++K + +G V ++ ++ + +L KI +V Q
Sbjct: 34 VSIXGPSGSGKSTXLNII-GCLDKPT-EGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQ 91
Query: 54 DLLFPMLTVEETLMFAAEFRLPRSVTKTKKQERVEALINQLGLRSAAKTFIGDXXXXXXX 113
L P+LT E + F+ + + ++++R + L +
Sbjct: 92 FNLIPLLTALENVELPLIFKYRGAXSGEERRKRALECLKXAELEER----FANHKPNQLS 147
Query: 114 XXXXXXXXXXXHIIHDPILLFLDEPTSGLDSTSAFMVVNVLQRI-AKSGSIVIMSIH 169
+ ++P ++ DEPT LDS + + +L+++ + G V++ H
Sbjct: 148 GGQQQRVAIARALANNPPIILADEPTGALDSKTGEKIXQLLKKLNEEDGKTVVVVTH 204
>pdb|2D3W|A Chain A, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|B Chain B, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|C Chain C, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|D Chain D, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
Length = 248
Score = 32.7 bits (73), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 23/37 (62%)
Query: 2 AILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVL 38
AI+G +G+GK+TL LAGR + E G V G+ L
Sbjct: 31 AIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDL 67
>pdb|2ZU0|C Chain C, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
pdb|2ZU0|D Chain D, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
Length = 267
Score = 32.7 bits (73), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 23/37 (62%)
Query: 2 AILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVL 38
AI+G +G+GK+TL LAGR + E G V G+ L
Sbjct: 50 AIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDL 86
>pdb|2RGW|A Chain A, Catalytic Subunit Of M. Jannaschii Aspartate
Transcarbamoylase
pdb|2RGW|B Chain B, Catalytic Subunit Of M. Jannaschii Aspartate
Transcarbamoylase
pdb|2RGW|C Chain C, Catalytic Subunit Of M. Jannaschii Aspartate
Transcarbamoylase
pdb|2RGW|D Chain D, Catalytic Subunit Of M. Jannaschii Aspartate
Transcarbamoylase
pdb|2RGW|E Chain E, Catalytic Subunit Of M. Jannaschii Aspartate
Transcarbamoylase
pdb|2RGW|F Chain F, Catalytic Subunit Of M. Jannaschii Aspartate
Transcarbamoylase
pdb|3E2P|A Chain A, Catalytic Subunit Of M. Jannaschii Aspartate
Transcarbamoylase In An Orthorhombic Crystal Form
pdb|3E2P|B Chain B, Catalytic Subunit Of M. Jannaschii Aspartate
Transcarbamoylase In An Orthorhombic Crystal Form
pdb|3E2P|C Chain C, Catalytic Subunit Of M. Jannaschii Aspartate
Transcarbamoylase In An Orthorhombic Crystal Form
pdb|3E2P|D Chain D, Catalytic Subunit Of M. Jannaschii Aspartate
Transcarbamoylase In An Orthorhombic Crystal Form
pdb|3E2P|E Chain E, Catalytic Subunit Of M. Jannaschii Aspartate
Transcarbamoylase In An Orthorhombic Crystal Form
pdb|3E2P|F Chain F, Catalytic Subunit Of M. Jannaschii Aspartate
Transcarbamoylase In An Orthorhombic Crystal Form
pdb|3E2P|I Chain I, Catalytic Subunit Of M. Jannaschii Aspartate
Transcarbamoylase In An Orthorhombic Crystal Form
pdb|3E2P|J Chain J, Catalytic Subunit Of M. Jannaschii Aspartate
Transcarbamoylase In An Orthorhombic Crystal Form
pdb|3E2P|K Chain K, Catalytic Subunit Of M. Jannaschii Aspartate
Transcarbamoylase In An Orthorhombic Crystal Form
pdb|3E2P|L Chain L, Catalytic Subunit Of M. Jannaschii Aspartate
Transcarbamoylase In An Orthorhombic Crystal Form
pdb|3E2P|M Chain M, Catalytic Subunit Of M. Jannaschii Aspartate
Transcarbamoylase In An Orthorhombic Crystal Form
pdb|3E2P|N Chain N, Catalytic Subunit Of M. Jannaschii Aspartate
Transcarbamoylase In An Orthorhombic Crystal Form
pdb|4EKN|B Chain B, Structure Of The Catalytic Chain Of Methanococcus
Jannaschii Aspartate Transcarbamoylase In A Hexagonal
Crystal Form
Length = 306
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 32/58 (55%), Gaps = 4/58 (6%)
Query: 295 LLTNSRRMPELFGIRFGSVLVTGFILATLFW----KLQDSPKGALKRLGFFAFAMTTI 348
+L +R+M EL + L+ G ILAT+F+ + + S + A+KRLG MT +
Sbjct: 18 ILDEARKMEELLNTKRPLKLLEGKILATVFYEPSTRTRLSFETAMKRLGGEVITMTDL 75
>pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1
Length = 593
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 20/37 (54%)
Query: 134 FLDEPTSGLDSTSAFMVVNVLQRIAKSGSIVIMSIHQ 170
F DEP+S LD V V++R+A G V++ H
Sbjct: 237 FFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHD 273
>pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein
From Pyrococcus Abysii
Length = 607
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 20/37 (54%)
Query: 134 FLDEPTSGLDSTSAFMVVNVLQRIAKSGSIVIMSIHQ 170
F DEP+S LD V V++R+A G V++ H
Sbjct: 251 FFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHD 287
>pdb|2D2E|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
pdb|2D2F|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
Length = 250
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 47/96 (48%), Gaps = 18/96 (18%)
Query: 2 AILGASGAGKTTLMDALAGRIEKESLQGAVTLNGE-VLE-------SKLLKIISAYVMQD 53
A++G +GAGK+TL LAG E +G + L+GE +LE K L + Y ++
Sbjct: 33 ALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDERARKGLFLAFQYPVE- 91
Query: 54 DLLFPMLTVEETLMFAAEFRLPRSV------TKTKK 83
P +T+ L A + +L R V TK KK
Sbjct: 92 ---VPGVTIANFLRLALQAKLGREVGVAEFWTKVKK 124
>pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|B Chain B, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|C Chain C, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
Length = 271
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 65/163 (39%), Gaps = 22/163 (13%)
Query: 2 AILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVL---ESKLLKIISAYVMQDDLLFP 58
A++G +G+GK+T+ L + G V L+GE L + L A V Q+ LLF
Sbjct: 49 ALVGPNGSGKSTVAALLQNLYQPTG--GKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFG 106
Query: 59 MLTVEETLMFAAEFRLPRSVTKTKKQERVEALINQLGLR-------SAAKTFIGDXXXXX 111
+ E + + +T+T E + A+ + G T +G+
Sbjct: 107 R-SFRENIAYG--------LTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQL 157
Query: 112 XXXXXXXXXXXXXHIIHDPILLFLDEPTSGLDSTSAFMVVNVL 154
+I P LL LD+ TS LD+ + V +L
Sbjct: 158 SGGQRQAVALARA-LIRKPRLLILDQATSALDAGNQLRVQRLL 199
>pdb|2R6F|A Chain A, Crystal Structure Of Bacillus Stearothermophilus Uvra
pdb|2R6F|B Chain B, Crystal Structure Of Bacillus Stearothermophilus Uvra
Length = 972
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 22/39 (56%)
Query: 132 LLFLDEPTSGLDSTSAFMVVNVLQRIAKSGSIVIMSIHQ 170
L LDEPT+GL +++VL R+ +G V++ H
Sbjct: 869 LYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHN 907
>pdb|3UWX|A Chain A, Crystal Structure Of Uvra-Uvrb Complex
Length = 972
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 22/39 (56%)
Query: 132 LLFLDEPTSGLDSTSAFMVVNVLQRIAKSGSIVIMSIHQ 170
L LDEPT+GL +++VL R+ +G V++ H
Sbjct: 869 LYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHN 907
>pdb|3UX8|A Chain A, Crystal Structure Of Uvra
Length = 670
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 22/39 (56%)
Query: 132 LLFLDEPTSGLDSTSAFMVVNVLQRIAKSGSIVIMSIHQ 170
L LDEPT+GL +++VL R+ +G V++ H
Sbjct: 567 LYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHN 605
>pdb|3J16|B Chain B, Models Of Ribosome-Bound Dom34p And Rli1p And Their
Ribosomal Binding Partners
Length = 608
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 42/93 (45%), Gaps = 10/93 (10%)
Query: 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLESKLLKIISAYVMQDDLLFPML 60
+ ++G +G GKTTL+ LAG ++ + Q LN + K+ V Q L F +
Sbjct: 381 LVMMGENGTGKTTLIKLLAGALKPDEGQDIPKLNVSMKPQKIAPKFPGTVRQ--LFFKKI 438
Query: 61 TVEETLMFAAEFRLPRSVTKTKKQERVEALINQ 93
+F P+ T K R++ +I+Q
Sbjct: 439 R--------GQFLNPQFQTDVVKPLRIDDIIDQ 463
>pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|B Chain B, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|C Chain C, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|D Chain D, Crystal Structure Of Lmra Atp-Binding Domain
Length = 243
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 24/41 (58%)
Query: 127 IHDPILLFLDEPTSGLDSTSAFMVVNVLQRIAKSGSIVIMS 167
+ +P +L LDE T+ LDS S MV L + K + ++++
Sbjct: 155 LRNPKILMLDEATASLDSESESMVQKALDSLMKGRTTLVIA 195
>pdb|3GF3|A Chain A, Glutaconyl-Coa Decarboxylase A Subunit From Clostridium
Symbiosum Co-Crystallized With Glutaconyl-Coa
pdb|3GF7|A Chain A, Glutaconyl-Coa Decarboxylase A Subunit From Clostridium
Symbiosum Apoprotein
pdb|3GLM|A Chain A, Glutaconyl-Coa Decarboxylase A Subunit From Clostridium
Symbiosum Co-Crystallized With Crotonyl-Coa
pdb|3GLM|B Chain B, Glutaconyl-Coa Decarboxylase A Subunit From Clostridium
Symbiosum Co-Crystallized With Crotonyl-Coa
pdb|3GLM|C Chain C, Glutaconyl-Coa Decarboxylase A Subunit From Clostridium
Symbiosum Co-Crystallized With Crotonyl-Coa
pdb|3GLM|D Chain D, Glutaconyl-Coa Decarboxylase A Subunit From Clostridium
Symbiosum Co-Crystallized With Crotonyl-Coa
pdb|3GMA|A Chain A, Glutaconyl-Coa Decarboxylase A Subunit From Clostridium
Symbiosum Co-Crystallized With Glutaryl-Coa
pdb|3GMA|B Chain B, Glutaconyl-Coa Decarboxylase A Subunit From Clostridium
Symbiosum Co-Crystallized With Glutaryl-Coa
Length = 588
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Query: 197 SNLAQFFAEFGHPVPENENKIE-FALDLMRELEESSSDGITSLVEFNESWQVTKRMEIKS 255
N+ E +P PENE +I+ D+ ++++ GITS + NE Q++ I +
Sbjct: 11 QNMPTIGKELVNPNPENEQEIKAVESDIHESIKKALDAGITSEEKLNERGQLSAMQRINA 70
Query: 256 RKTP 259
P
Sbjct: 71 LIDP 74
>pdb|3C8U|A Chain A, Crystal Structure Of Putative Fructose Transport System
Kinase (Yp_612366.1) From Silicibacter Sp. Tm1040 At
1.95 A Resolution
Length = 208
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 42/88 (47%), Gaps = 12/88 (13%)
Query: 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVT-LNGEVLESKLLKIISAYVMQDDLLFPM 59
+A+ GA G+GK+TL + LA + + L V +G L+++LL+ L P
Sbjct: 25 VALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPXDGFHLDNRLLEPRG--------LLPR 76
Query: 60 LTVEETLMFAAEFRLPRSVTKTKKQERV 87
ET F RL ++ K QERV
Sbjct: 77 KGAPETFDFEGFQRLCHAL---KHQERV 101
>pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human
Tap1
Length = 260
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 41/183 (22%), Positives = 76/183 (41%), Gaps = 30/183 (16%)
Query: 2 AILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVL---ESKLLKIISAYVMQDDLLFP 58
A++G +G+GK+T+ L + G + L+G+ L E + L A V Q+ +F
Sbjct: 47 ALVGPNGSGKSTVAALLQNLYQPTG--GQLLLDGKPLPQYEHRYLHRQVAAVGQEPQVFG 104
Query: 59 MLTVEETLMFAAEFRLPRSVTKTKKQERVEALINQLGLRSAAKTFIG----------DXX 108
+++E + + +T+ E + A ++S A +FI D
Sbjct: 105 R-SLQENIAYG--------LTQKPTMEEITAA----AVKSGAHSFISGLPQGYDTEVDEA 151
Query: 109 XXXXXXXXXXXXXXXXHIIHDPILLFLDEPTSGLDSTSAFMVVNVLQRIAK--SGSIVIM 166
+I P +L LD+ TS LD+ S V +L + S S++++
Sbjct: 152 GSQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLI 211
Query: 167 SIH 169
+ H
Sbjct: 212 TQH 214
>pdb|3LCY|A Chain A, Titin Ig Tandem Domains A164-A165
pdb|3LCY|B Chain B, Titin Ig Tandem Domains A164-A165
pdb|3LCY|C Chain C, Titin Ig Tandem Domains A164-A165
pdb|3LCY|D Chain D, Titin Ig Tandem Domains A164-A165
Length = 197
Score = 30.0 bits (66), Expect = 3.6, Method: Composition-based stats.
Identities = 21/81 (25%), Positives = 33/81 (40%), Gaps = 6/81 (7%)
Query: 228 EESSSDGITSLVEFNESWQVTKRMEIKSRKTPTFHLKMPSSD------GSNLTSSVQTFA 281
EE +G+ + + NE +V ++ + TP FH P + GS L V
Sbjct: 70 EEQEDEGVYTCIATNEVGEVETSSKLLLQATPQFHPGYPLKEKYYGAVGSTLRLHVMYIG 129
Query: 282 NPFWIETIVISKRLLTNSRRM 302
P T ++LL NS +
Sbjct: 130 RPVPAMTWFHGQKLLQNSENI 150
>pdb|4FWI|B Chain B, Crystal Structure Of The Nucleotide-binding Domain Of A
Dipeptide Abc Transporter
Length = 334
Score = 30.0 bits (66), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 11/15 (73%), Positives = 13/15 (86%)
Query: 129 DPILLFLDEPTSGLD 143
DP++L LDEPTS LD
Sbjct: 172 DPVVLILDEPTSALD 186
>pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar
Transporter
Length = 372
Score = 30.0 bits (66), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 63/149 (42%), Gaps = 19/149 (12%)
Query: 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGE---VLESKLLKIISAYVMQDDLLF 57
+ +LG SG GKTT + +AG +E +G + L K I + V Q ++
Sbjct: 40 LVLLGPSGCGKTTTLRMIAGL--EEPTEGRIYFGDRDVTYLPPKDRNI--SMVFQSYAVW 95
Query: 58 PMLTVEETLMFAAEF-RLPRSVTKTKKQERVEAL-INQLGLRSAAKTFIGDXXXXXXXXX 115
P +TV E + F + + P+ + + E L I +L R A+ G
Sbjct: 96 PHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARA 155
Query: 116 XXXXXXXXXHIIHDPILLFLDEPTSGLDS 144
I+ +P +L +DEP S LD+
Sbjct: 156 ----------IVVEPDVLLMDEPLSNLDA 174
>pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of
Multisugar Transporter From Pyrococcus Horikoshii Ot3
Complexed With Atp
Length = 373
Score = 30.0 bits (66), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 63/149 (42%), Gaps = 19/149 (12%)
Query: 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGE---VLESKLLKIISAYVMQDDLLF 57
+ +LG SG GKTT + +AG +E +G + L K I + V Q ++
Sbjct: 41 LVLLGPSGCGKTTTLRMIAGL--EEPTEGRIYFGDRDVTYLPPKDRNI--SMVFQSYAVW 96
Query: 58 PMLTVEETLMFAAEF-RLPRSVTKTKKQERVEAL-INQLGLRSAAKTFIGDXXXXXXXXX 115
P +TV E + F + + P+ + + E L I +L R A+ G
Sbjct: 97 PHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARA 156
Query: 116 XXXXXXXXXHIIHDPILLFLDEPTSGLDS 144
I+ +P +L +DEP S LD+
Sbjct: 157 ----------IVVEPDVLLMDEPLSNLDA 175
>pdb|3CR8|A Chain A, Hexameric Aps Kinase From Thiobacillus Denitrificans
pdb|3CR8|B Chain B, Hexameric Aps Kinase From Thiobacillus Denitrificans
pdb|3CR8|C Chain C, Hexameric Aps Kinase From Thiobacillus Denitrificans
Length = 552
Score = 29.6 bits (65), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 23/38 (60%)
Query: 5 GASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLESKL 42
G SGAGK+TL ALA R+ + + L+G+++ L
Sbjct: 376 GLSGAGKSTLARALAARLMEMGGRCVTLLDGDIVRRHL 413
>pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 598
Score = 29.3 bits (64), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 34/170 (20%), Positives = 75/170 (44%), Gaps = 9/170 (5%)
Query: 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNG---EVLESKLLKIISAYVMQDDLLF 57
+A++G +G+GKTT+++ L + + +G + ++G ++ L+ V+QD +LF
Sbjct: 384 VALVGPTGSGKTTIVNLLMRFYDVD--RGQILVDGIDIRKIKRSSLRSSIGIVLQDTILF 441
Query: 58 PMLTVEETLMFAAEFRLPRSVTKTKKQERVEALINQLGLRSAAKTFIGDXXXXXXXXXXX 117
TV+E L + + + K + I L +T + D
Sbjct: 442 ST-TVKENLKYGNPGATDEEIKEAAKLTHSDHFIKHLP--EGYETVLTDNGEDLSQGQRQ 498
Query: 118 XXXXXXXHIIHDPILLFLDEPTSGLDSTSAFMVVNVLQRIAKSGSIVIMS 167
+ +P +L LDE TS +D+ + + + ++ + + +I++
Sbjct: 499 LLAITRA-FLANPKILILDEATSNVDTKTEKSIQAAMWKLMEGKTSIIIA 547
>pdb|1BEV|2 Chain 2, Bovine Enterovirus Vg-5-27
Length = 248
Score = 29.3 bits (64), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 7/36 (19%)
Query: 252 EIKSRKTPTFHLKMPSSDGSNLTSSVQTFANPFWIE 287
+I +++ P F MP S+G TF PFW+E
Sbjct: 131 QIATQEQPAFDRTMPGSEGG-------TFQEPFWLE 159
>pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure)
pdb|3NH9|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Atp Bound
Structure)
pdb|3NHA|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Mg Bound
Structure)
pdb|3NHB|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Bound
Structure)
Length = 306
Score = 29.3 bits (64), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 41/178 (23%), Positives = 75/178 (42%), Gaps = 25/178 (14%)
Query: 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGE----VLESKLLKIISAYVMQDDLL 56
+A++G SGAGK+T++ L + S G + ++G+ V ++ L I V QD +L
Sbjct: 83 LALVGPSGAGKSTILRLLFRFYDISS--GCIRIDGQDISQVTQASLRSHI-GVVPQDTVL 139
Query: 57 FPMLTVEETLMFAAEFRLPRSVTKTKKQERVEALINQLGLRSAA-------KTFIGDXXX 109
F A R R T + VEA G+ A +T +G+
Sbjct: 140 F-------NDTIADNIRYGRV---TAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGL 189
Query: 110 XXXXXXXXXXXXXXXHIIHDPILLFLDEPTSGLDSTSAFMVVNVLQRIAKSGSIVIMS 167
I+ P ++ LDE TS LD+++ + L ++ + + ++++
Sbjct: 190 KLSGGEKQRVAIART-ILKAPGIILLDEATSALDTSNERAIQASLAKVCANRTTIVVA 246
>pdb|2PDK|A Chain A, Human Aldose Reductase Mutant L301m Complexed With
Sorbinil.
pdb|2PDL|A Chain A, Human Aldose Reductase Mutant L301m Complexed With
Tolrestat
Length = 316
Score = 28.9 bits (63), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 229 ESSSDGITSLVEFNESWQVTKRMEIKSRKTPTFH 262
E SS +T+L+ +N +W+V M S K FH
Sbjct: 280 ELSSQDMTTLLSYNRNWRVCALMSCTSHKDYPFH 313
>pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|B Chain B, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|C Chain C, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|D Chain D, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q1E|A Chain A, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|1Q1E|B Chain B, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|2AWN|A Chain A, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|B Chain B, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|C Chain C, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|D Chain D, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWO|A Chain A, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|B Chain B, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|C Chain C, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|D Chain D, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|3FH6|A Chain A, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|B Chain B, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|C Chain C, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|D Chain D, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3PUY|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUY|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUZ|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PUZ|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PV0|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PV0|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PUV|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUV|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUW|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUW|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUX|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3PUX|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3RLF|A Chain A, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
pdb|3RLF|B Chain B, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
Length = 381
Score = 28.9 bits (63), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 33/144 (22%), Positives = 57/144 (39%), Gaps = 13/144 (9%)
Query: 4 LGASGAGKTTLMDALAGRIEKESLQGAVTLNGE--VLESKLLKIISAYVMQDDLLFPMLT 61
+G SG GK+TL+ +AG E++ GE + ++ + V Q L+P L+
Sbjct: 35 VGPSGCGKSTLLRMIAG---LETITSGDLFIGEKRMNDTPPAERGVGMVFQSYALYPHLS 91
Query: 62 VEETLMFAAEFRLPRSVTKTKKQERVEALINQLGLRSAAKTFIGDXXXXXXXXXXXXXXX 121
V E + F + K+E + +NQ+ + D
Sbjct: 92 VAENMSFGLKL-------AGAKKEVINQRVNQVA-EVLQLAHLLDRKPKALSGGQRQRVA 143
Query: 122 XXXHIIHDPILLFLDEPTSGLDST 145
++ +P + LDEP S LD+
Sbjct: 144 IGRTLVAEPSVFLLDEPLSNLDAA 167
>pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|B Chain B, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|C Chain C, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|D Chain D, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
Length = 381
Score = 28.9 bits (63), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 33/144 (22%), Positives = 57/144 (39%), Gaps = 13/144 (9%)
Query: 4 LGASGAGKTTLMDALAGRIEKESLQGAVTLNGE--VLESKLLKIISAYVMQDDLLFPMLT 61
+G SG GK+TL+ +AG E++ GE + ++ + V Q L+P L+
Sbjct: 35 VGPSGCGKSTLLRMIAG---LETITSGDLFIGEKRMNDTPPAERGVGMVFQSYALYPHLS 91
Query: 62 VEETLMFAAEFRLPRSVTKTKKQERVEALINQLGLRSAAKTFIGDXXXXXXXXXXXXXXX 121
V E + F + K+E + +NQ+ + D
Sbjct: 92 VAENMSFGLKL-------AGAKKEVINQRVNQVA-EVLQLAHLLDRKPKALSGGQRQRVA 143
Query: 122 XXXHIIHDPILLFLDEPTSGLDST 145
++ +P + LDEP S LD+
Sbjct: 144 IGRTLVAEPSVFLLDEPLSNLDAA 167
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.325 0.138 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,933,513
Number of Sequences: 62578
Number of extensions: 555179
Number of successful extensions: 1880
Number of sequences better than 100.0: 87
Number of HSP's better than 100.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 50
Number of HSP's that attempted gapping in prelim test: 1773
Number of HSP's gapped (non-prelim): 113
length of query: 592
length of database: 14,973,337
effective HSP length: 104
effective length of query: 488
effective length of database: 8,465,225
effective search space: 4131029800
effective search space used: 4131029800
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 54 (25.4 bits)