Query 048028
Match_columns 592
No_of_seqs 411 out of 2603
Neff 7.6
Searched_HMMs 46136
Date Fri Mar 29 05:36:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048028.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048028hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0061 Transporter, ABC super 100.0 4E-109 9E-114 925.7 56.0 551 1-592 59-613 (613)
2 TIGR00955 3a01204 The Eye Pigm 100.0 3E-106 6E-111 910.9 61.5 559 1-591 54-617 (617)
3 PLN03211 ABC transporter G-25; 100.0 1E-102 3E-107 882.1 60.8 547 1-588 97-659 (659)
4 TIGR00956 3a01205 Pleiotropic 100.0 3E-102 7E-107 939.0 58.7 575 1-587 90-694 (1394)
5 TIGR00956 3a01205 Pleiotropic 100.0 2E-100 4E-105 923.9 61.0 579 1-588 792-1391(1394)
6 PLN03140 ABC transporter G fam 100.0 6E-100 1E-104 916.0 60.4 549 1-591 909-1470(1470)
7 PLN03140 ABC transporter G fam 100.0 5.9E-99 1E-103 907.6 58.2 550 1-587 194-789 (1470)
8 KOG0065 Pleiotropic drug resis 100.0 7E-101 2E-105 872.3 37.1 558 1-567 820-1390(1391)
9 KOG0065 Pleiotropic drug resis 100.0 5.8E-94 1.2E-98 816.1 43.1 570 1-587 144-730 (1391)
10 COG1126 GlnQ ABC-type polar am 100.0 2.4E-47 5.3E-52 361.5 20.3 189 1-199 31-223 (240)
11 COG1131 CcmA ABC-type multidru 100.0 1.6E-44 3.6E-49 371.8 22.5 194 1-205 34-230 (293)
12 COG1125 OpuBA ABC-type proline 100.0 3.5E-44 7.7E-49 346.4 18.5 191 1-200 30-224 (309)
13 COG3839 MalK ABC-type sugar tr 100.0 3.9E-44 8.5E-49 368.6 19.9 189 1-200 32-222 (338)
14 COG1135 AbcC ABC-type metal io 100.0 4.3E-44 9.4E-49 355.6 18.7 188 1-199 35-229 (339)
15 COG1118 CysA ABC-type sulfate/ 100.0 1E-43 2.2E-48 352.0 19.0 191 1-200 31-226 (345)
16 COG1136 SalX ABC-type antimicr 100.0 2.8E-43 6.2E-48 343.1 20.7 179 1-190 34-220 (226)
17 COG4555 NatA ABC-type Na+ tran 100.0 8.8E-44 1.9E-48 332.7 16.1 190 1-201 31-222 (245)
18 COG3842 PotA ABC-type spermidi 100.0 1.1E-43 2.5E-48 367.1 18.2 204 1-222 34-239 (352)
19 COG1127 Ttg2A ABC-type transpo 100.0 2.7E-43 5.9E-48 338.9 19.0 190 1-200 37-234 (263)
20 COG1116 TauB ABC-type nitrate/ 100.0 3.2E-43 6.9E-48 343.0 18.8 175 1-188 32-207 (248)
21 COG1120 FepC ABC-type cobalami 100.0 2.3E-43 5E-48 350.2 17.5 191 1-199 31-226 (258)
22 COG3840 ThiQ ABC-type thiamine 100.0 4.7E-43 1E-47 322.7 16.7 188 1-199 28-217 (231)
23 COG1121 ZnuC ABC-type Mn/Zn tr 100.0 2E-42 4.3E-47 341.8 20.2 190 1-200 33-226 (254)
24 COG3638 ABC-type phosphate/pho 100.0 3.6E-42 7.8E-47 330.3 16.5 194 1-202 33-238 (258)
25 PRK13537 nodulation ABC transp 100.0 2.3E-41 5E-46 351.2 23.0 190 1-201 36-227 (306)
26 PRK11650 ugpC glycerol-3-phosp 100.0 2.6E-41 5.7E-46 356.9 23.2 189 1-200 33-223 (356)
27 COG1117 PstB ABC-type phosphat 100.0 7.9E-42 1.7E-46 322.6 16.3 204 1-220 36-248 (253)
28 TIGR03265 PhnT2 putative 2-ami 100.0 4.4E-41 9.5E-46 354.8 23.2 189 1-200 33-223 (353)
29 TIGR01188 drrA daunorubicin re 100.0 6.1E-41 1.3E-45 347.9 22.8 190 1-201 22-213 (302)
30 TIGR03258 PhnT 2-aminoethylpho 100.0 6.8E-41 1.5E-45 354.0 23.3 191 1-200 34-227 (362)
31 PRK11432 fbpC ferric transport 100.0 7.9E-41 1.7E-45 352.4 23.5 189 1-200 35-225 (351)
32 TIGR02314 ABC_MetN D-methionin 100.0 8.6E-41 1.9E-45 350.5 23.1 188 1-199 34-228 (343)
33 cd03261 ABC_Org_Solvent_Resist 100.0 1.5E-40 3.2E-45 332.9 22.6 189 1-199 29-224 (235)
34 PRK09452 potA putrescine/sperm 100.0 1.7E-40 3.7E-45 352.2 23.1 189 1-200 43-233 (375)
35 TIGR01186 proV glycine betaine 100.0 2.9E-40 6.3E-45 348.4 23.7 189 1-200 22-218 (363)
36 PRK10851 sulfate/thiosulfate t 100.0 2.9E-40 6.3E-45 348.6 23.3 192 1-200 31-225 (353)
37 PRK13536 nodulation factor exp 100.0 3.6E-40 7.8E-45 346.2 23.5 190 1-201 70-261 (340)
38 PRK11607 potG putrescine trans 100.0 4.4E-40 9.6E-45 349.6 23.4 189 1-200 48-238 (377)
39 COG2884 FtsE Predicted ATPase 100.0 3E-40 6.5E-45 306.6 18.6 183 2-195 32-220 (223)
40 COG1122 CbiO ABC-type cobalt t 100.0 2.4E-40 5.2E-45 328.1 19.2 190 1-201 33-228 (235)
41 PRK11000 maltose/maltodextrin 100.0 7.9E-40 1.7E-44 347.7 23.4 189 1-200 32-222 (369)
42 cd03265 ABC_DrrA DrrA is the A 100.0 8.7E-40 1.9E-44 324.1 22.2 188 1-199 29-219 (220)
43 TIGR01288 nodI ATP-binding ABC 100.0 1.2E-39 2.6E-44 338.4 23.0 190 1-201 33-224 (303)
44 cd03219 ABC_Mj1267_LivG_branch 100.0 1.4E-39 3E-44 326.0 22.7 191 1-199 29-230 (236)
45 cd03259 ABC_Carb_Solutes_like 100.0 1.4E-39 3E-44 321.0 21.9 183 1-194 29-213 (213)
46 cd03218 ABC_YhbG The ABC trans 100.0 1.8E-39 3.9E-44 324.3 22.7 188 1-199 29-220 (232)
47 TIGR00960 3a0501s02 Type II (G 100.0 1E-39 2.2E-44 322.7 20.5 179 1-190 32-216 (216)
48 PRK11153 metN DL-methionine tr 100.0 1.9E-39 4E-44 342.0 23.3 189 1-200 34-229 (343)
49 cd03296 ABC_CysA_sulfate_impor 100.0 2.9E-39 6.3E-44 324.4 22.7 191 1-199 31-224 (239)
50 cd03258 ABC_MetN_methionine_tr 100.0 2.7E-39 5.9E-44 323.3 22.1 188 1-199 34-228 (233)
51 COG1137 YhbG ABC-type (unclass 100.0 1.1E-40 2.4E-45 311.6 11.1 191 1-200 33-227 (243)
52 cd03256 ABC_PhnC_transporter A 100.0 2.2E-39 4.7E-44 325.5 21.3 191 1-199 30-232 (241)
53 cd03293 ABC_NrtD_SsuB_transpor 100.0 3.5E-39 7.6E-44 319.7 22.5 184 1-197 33-219 (220)
54 cd03269 ABC_putative_ATPase Th 100.0 2.3E-39 5E-44 318.7 20.9 182 1-194 29-210 (210)
55 TIGR03522 GldA_ABC_ATP gliding 100.0 2.6E-39 5.7E-44 335.4 22.4 189 1-201 31-221 (301)
56 PRK13643 cbiO cobalt transport 100.0 4E-39 8.7E-44 332.0 23.5 202 1-214 35-249 (288)
57 cd03266 ABC_NatA_sodium_export 100.0 2.7E-39 5.7E-44 320.1 21.3 183 1-194 34-218 (218)
58 COG1124 DppF ABC-type dipeptid 100.0 1.4E-39 3.1E-44 314.6 18.7 189 1-201 36-231 (252)
59 cd03301 ABC_MalK_N The N-termi 100.0 5.2E-39 1.1E-43 316.8 22.1 183 1-194 29-213 (213)
60 cd03294 ABC_Pro_Gly_Bertaine T 100.0 6.6E-39 1.4E-43 327.4 23.5 188 1-199 53-248 (269)
61 PRK13637 cbiO cobalt transport 100.0 8.6E-39 1.9E-43 329.4 24.4 189 1-200 36-233 (287)
62 cd03263 ABC_subfamily_A The AB 100.0 4.6E-39 1E-43 318.8 21.3 187 1-199 31-219 (220)
63 COG0411 LivG ABC-type branched 100.0 1.1E-39 2.3E-44 315.8 16.1 192 1-200 33-238 (250)
64 cd03295 ABC_OpuCA_Osmoprotecti 100.0 6.9E-39 1.5E-43 322.3 22.4 188 1-199 30-223 (242)
65 TIGR01187 potA spermidine/putr 100.0 6.4E-39 1.4E-43 335.6 22.9 187 3-200 1-189 (325)
66 cd03255 ABC_MJ0796_Lo1CDE_FtsE 100.0 5.1E-39 1.1E-43 318.0 20.5 178 1-190 33-218 (218)
67 PRK10070 glycine betaine trans 100.0 8.6E-39 1.9E-43 341.0 23.7 189 1-200 57-253 (400)
68 cd03260 ABC_PstB_phosphate_tra 100.0 4.6E-39 9.9E-44 320.4 20.2 188 1-198 29-226 (227)
69 PRK09493 glnQ glutamine ABC tr 100.0 8.9E-39 1.9E-43 321.1 22.4 189 1-199 30-223 (240)
70 cd03224 ABC_TM1139_LivF_branch 100.0 6.5E-39 1.4E-43 318.1 21.0 186 1-199 29-219 (222)
71 COG4148 ModC ABC-type molybdat 100.0 8.1E-40 1.8E-44 319.5 14.1 183 1-200 27-217 (352)
72 TIGR02315 ABC_phnC phosphonate 100.0 4.8E-39 1E-43 323.5 20.0 191 1-199 31-233 (243)
73 PRK11264 putative amino-acid A 100.0 1.2E-38 2.6E-43 321.9 22.8 189 1-199 32-231 (250)
74 cd03234 ABCG_White The White s 100.0 1.3E-38 2.8E-43 317.0 22.7 189 1-194 36-226 (226)
75 PRK09536 btuD corrinoid ABC tr 100.0 6.5E-39 1.4E-43 342.2 21.9 191 1-199 32-226 (402)
76 PRK13647 cbiO cobalt transport 100.0 1.5E-38 3.3E-43 325.5 23.6 188 1-199 34-225 (274)
77 cd03226 ABC_cobalt_CbiO_domain 100.0 5.3E-39 1.2E-43 315.0 19.2 176 1-191 29-205 (205)
78 cd03268 ABC_BcrA_bacitracin_re 100.0 5.4E-39 1.2E-43 315.6 19.0 179 1-194 29-208 (208)
79 TIGR02142 modC_ABC molybdenum 100.0 1.1E-38 2.5E-43 337.5 22.9 187 1-200 26-220 (354)
80 cd03264 ABC_drug_resistance_li 100.0 7.6E-39 1.6E-43 315.3 20.1 182 1-194 28-211 (211)
81 PRK13634 cbiO cobalt transport 100.0 1.7E-38 3.7E-43 327.7 23.5 199 1-211 36-248 (290)
82 PRK13651 cobalt transporter AT 100.0 1.6E-38 3.5E-43 329.5 22.9 189 1-200 36-253 (305)
83 TIGR01184 ntrCD nitrate transp 100.0 1.5E-38 3.2E-43 317.5 21.7 188 1-199 14-202 (230)
84 TIGR01257 rim_protein retinal- 100.0 4.6E-36 9.9E-41 365.0 47.7 192 1-204 959-1152(2272)
85 cd03292 ABC_FtsE_transporter F 100.0 1.3E-38 2.7E-43 314.2 20.6 179 1-190 30-214 (214)
86 PRK11831 putative ABC transpor 100.0 2.2E-38 4.8E-43 323.5 23.0 189 1-199 36-231 (269)
87 PRK13650 cbiO cobalt transport 100.0 2.1E-38 4.6E-43 325.2 22.9 188 1-200 36-228 (279)
88 PRK11144 modC molybdate transp 100.0 1.6E-38 3.5E-43 336.0 22.4 183 1-200 27-217 (352)
89 TIGR02673 FtsE cell division A 100.0 1.8E-38 3.9E-43 313.3 21.1 178 1-189 31-214 (214)
90 PRK11629 lolD lipoprotein tran 100.0 3E-38 6.4E-43 315.9 22.8 184 1-196 38-229 (233)
91 PRK10895 lipopolysaccharide AB 100.0 2E-38 4.4E-43 318.7 21.6 189 1-199 32-224 (241)
92 PRK13631 cbiO cobalt transport 100.0 3.1E-38 6.8E-43 329.3 23.7 199 1-211 55-278 (320)
93 cd03298 ABC_ThiQ_thiamine_tran 100.0 2.1E-38 4.5E-43 312.1 20.7 183 1-194 27-211 (211)
94 cd03297 ABC_ModC_molybdenum_tr 100.0 2.8E-38 6.1E-43 311.9 21.6 181 1-194 26-214 (214)
95 TIGR03415 ABC_choXWV_ATP choli 100.0 3E-38 6.6E-43 334.6 23.3 189 1-200 53-253 (382)
96 COG0410 LivF ABC-type branched 100.0 1.4E-38 2.9E-43 305.8 18.5 188 1-200 32-225 (237)
97 PRK13641 cbiO cobalt transport 100.0 3.1E-38 6.8E-43 325.3 22.5 188 1-200 36-233 (287)
98 TIGR00972 3a0107s01c2 phosphat 100.0 4.1E-38 8.8E-43 317.6 22.9 189 1-199 30-230 (247)
99 PRK15079 oligopeptide ABC tran 100.0 4.6E-38 9.9E-43 329.3 23.3 191 1-200 50-250 (331)
100 TIGR03864 PQQ_ABC_ATP ABC tran 100.0 5.9E-38 1.3E-42 314.3 23.1 188 1-200 30-220 (236)
101 PRK10619 histidine/lysine/argi 100.0 5.4E-38 1.2E-42 318.6 23.1 188 1-199 34-239 (257)
102 PRK14247 phosphate ABC transpo 100.0 6E-38 1.3E-42 317.0 23.1 195 1-199 32-232 (250)
103 PRK10771 thiQ thiamine transpo 100.0 5E-38 1.1E-42 314.1 21.6 189 1-200 28-218 (232)
104 cd03225 ABC_cobalt_CbiO_domain 100.0 3.5E-38 7.5E-43 310.5 20.1 178 1-189 30-211 (211)
105 PRK10908 cell division protein 100.0 5.6E-38 1.2E-42 311.6 21.8 180 1-191 31-216 (222)
106 PRK13646 cbiO cobalt transport 100.0 5.1E-38 1.1E-42 323.6 22.0 188 1-200 36-234 (286)
107 cd03257 ABC_NikE_OppD_transpor 100.0 6E-38 1.3E-42 312.3 21.8 184 1-194 34-228 (228)
108 cd03262 ABC_HisP_GlnQ_permease 100.0 4.1E-38 8.9E-43 310.3 20.4 180 1-190 29-213 (213)
109 PRK13636 cbiO cobalt transport 100.0 8.8E-38 1.9E-42 321.3 23.7 189 1-200 35-230 (283)
110 TIGR02211 LolD_lipo_ex lipopro 100.0 5.5E-38 1.2E-42 311.3 21.4 179 1-191 34-220 (221)
111 PRK11614 livF leucine/isoleuci 100.0 4.7E-38 1E-42 315.2 21.0 186 1-199 34-224 (237)
112 PRK13635 cbiO cobalt transport 100.0 8.1E-38 1.7E-42 320.9 23.2 188 1-200 36-228 (279)
113 PRK11124 artP arginine transpo 100.0 6.6E-38 1.4E-42 315.1 21.9 188 1-199 31-228 (242)
114 TIGR02770 nickel_nikD nickel i 100.0 7.9E-38 1.7E-42 312.2 22.3 191 1-200 15-214 (230)
115 PRK11300 livG leucine/isoleuci 100.0 7.2E-38 1.6E-42 317.3 22.3 191 1-199 34-241 (255)
116 PRK13649 cbiO cobalt transport 100.0 1.1E-37 2.4E-42 320.3 23.9 187 1-199 36-232 (280)
117 TIGR03411 urea_trans_UrtD urea 100.0 1E-37 2.2E-42 313.8 22.6 190 1-199 31-229 (242)
118 COG4175 ProV ABC-type proline/ 100.0 1.8E-38 3.8E-43 315.0 16.5 188 2-200 58-253 (386)
119 PRK11248 tauB taurine transpor 100.0 1.1E-37 2.3E-42 316.0 22.6 184 1-197 30-216 (255)
120 PRK14268 phosphate ABC transpo 100.0 1E-37 2.2E-42 316.8 22.5 192 1-199 41-240 (258)
121 COG4525 TauB ABC-type taurine 100.0 8.6E-38 1.9E-42 290.8 20.0 189 1-202 34-225 (259)
122 cd03235 ABC_Metallic_Cations A 100.0 4.8E-38 1E-42 310.0 19.5 183 1-194 28-213 (213)
123 PRK13638 cbiO cobalt transport 100.0 1.4E-37 2.9E-42 318.1 23.5 188 1-199 30-223 (271)
124 TIGR01978 sufC FeS assembly AT 100.0 1.2E-37 2.7E-42 313.1 22.6 195 1-200 29-233 (243)
125 TIGR01277 thiQ thiamine ABC tr 100.0 1.3E-37 2.7E-42 307.1 21.9 184 1-195 27-212 (213)
126 PRK13644 cbiO cobalt transport 100.0 8.4E-38 1.8E-42 320.0 21.4 187 1-199 31-222 (274)
127 PRK14267 phosphate ABC transpo 100.0 1.4E-37 3E-42 314.8 22.7 195 1-199 33-235 (253)
128 TIGR03005 ectoine_ehuA ectoine 100.0 1.3E-37 2.9E-42 314.9 22.5 189 1-199 29-234 (252)
129 PRK13548 hmuV hemin importer A 100.0 1.2E-37 2.7E-42 316.1 22.1 188 1-199 31-228 (258)
130 PRK13652 cbiO cobalt transport 100.0 1.4E-37 3E-42 319.0 22.5 189 1-200 33-226 (277)
131 PRK11022 dppD dipeptide transp 100.0 1.8E-37 3.9E-42 324.6 23.8 195 1-200 36-242 (326)
132 PRK09473 oppD oligopeptide tra 100.0 1.8E-37 3.8E-42 325.0 23.5 195 1-200 45-250 (330)
133 PRK09984 phosphonate/organopho 100.0 1.2E-37 2.5E-42 317.1 21.4 193 1-199 33-240 (262)
134 PRK14273 phosphate ABC transpo 100.0 1.7E-37 3.6E-42 314.5 22.4 189 1-199 36-236 (254)
135 TIGR03740 galliderm_ABC gallid 100.0 1E-37 2.3E-42 309.8 20.4 182 1-198 29-210 (223)
136 PRK13648 cbiO cobalt transport 100.0 2.4E-37 5.1E-42 316.0 23.5 187 1-199 38-229 (269)
137 TIGR02769 nickel_nikE nickel i 100.0 1.9E-37 4.1E-42 316.1 22.7 190 1-200 40-239 (265)
138 COG4152 ABC-type uncharacteriz 100.0 3.8E-38 8.3E-43 302.7 16.5 192 1-204 31-222 (300)
139 PRK14245 phosphate ABC transpo 100.0 2E-37 4.3E-42 313.2 22.4 194 1-200 32-233 (250)
140 PRK13639 cbiO cobalt transport 100.0 2.9E-37 6.3E-42 316.2 23.6 189 1-200 31-225 (275)
141 cd03299 ABC_ModC_like Archeal 100.0 2.9E-37 6.3E-42 309.2 23.0 188 1-199 28-217 (235)
142 PRK11308 dppF dipeptide transp 100.0 2.4E-37 5.2E-42 323.5 23.2 190 1-200 44-243 (327)
143 PRK13640 cbiO cobalt transport 100.0 2.9E-37 6.3E-42 317.3 23.1 190 1-200 36-231 (282)
144 PRK11231 fecE iron-dicitrate t 100.0 1.5E-37 3.3E-42 315.0 20.8 191 1-199 31-225 (255)
145 PRK13633 cobalt transporter AT 100.0 2.9E-37 6.2E-42 317.1 22.9 188 1-200 39-232 (280)
146 PRK10584 putative ABC transpor 100.0 3E-37 6.6E-42 307.5 22.2 180 1-192 39-226 (228)
147 PRK10575 iron-hydroxamate tran 100.0 1.9E-37 4.1E-42 316.0 20.9 191 1-199 40-235 (265)
148 PRK13632 cbiO cobalt transport 100.0 2.2E-37 4.8E-42 316.5 21.5 187 1-199 38-229 (271)
149 cd03267 ABC_NatA_like Similar 100.0 3.3E-37 7.2E-42 308.9 22.3 183 1-194 50-236 (236)
150 PRK13549 xylose transporter AT 100.0 1.4E-37 3.1E-42 344.8 21.4 193 1-199 34-230 (506)
151 PRK11247 ssuB aliphatic sulfon 100.0 2.1E-37 4.5E-42 313.8 20.7 178 1-197 41-219 (257)
152 TIGR03873 F420-0_ABC_ATP propo 100.0 2.4E-37 5.3E-42 313.7 21.2 191 1-199 30-224 (256)
153 cd03300 ABC_PotA_N PotA is an 100.0 5.3E-37 1.2E-41 306.7 23.3 188 1-199 29-218 (232)
154 PRK14241 phosphate transporter 100.0 4.2E-37 9.2E-42 312.3 22.9 194 1-199 33-240 (258)
155 TIGR03410 urea_trans_UrtE urea 100.0 2E-37 4.4E-42 309.2 20.1 185 1-199 29-219 (230)
156 PRK15093 antimicrobial peptide 100.0 3.9E-37 8.5E-42 322.8 23.2 197 1-200 36-247 (330)
157 TIGR00968 3a0106s01 sulfate AB 100.0 4.2E-37 9.1E-42 308.4 22.4 189 1-200 29-219 (237)
158 PRK14269 phosphate ABC transpo 100.0 3.9E-37 8.5E-42 310.3 22.2 194 1-199 31-228 (246)
159 PRK14242 phosphate transporter 100.0 4.2E-37 9.1E-42 311.3 22.5 193 1-199 35-235 (253)
160 PRK10253 iron-enterobactin tra 100.0 2.6E-37 5.6E-42 315.0 21.0 192 1-200 36-232 (265)
161 PRK13645 cbiO cobalt transport 100.0 3.2E-37 7E-42 318.2 21.9 187 1-199 40-238 (289)
162 PRK14256 phosphate ABC transpo 100.0 6.7E-37 1.4E-41 309.7 23.1 194 1-199 33-234 (252)
163 TIGR03771 anch_rpt_ABC anchore 100.0 3.7E-37 8E-42 306.0 20.8 188 1-199 9-199 (223)
164 PRK15112 antimicrobial peptide 100.0 5.6E-37 1.2E-41 312.9 22.4 189 1-199 42-237 (267)
165 PRK10744 pstB phosphate transp 100.0 6.5E-37 1.4E-41 311.2 22.1 193 1-199 42-242 (260)
166 PRK14250 phosphate ABC transpo 100.0 4.3E-37 9.3E-42 309.1 20.1 183 1-199 32-219 (241)
167 PRK14244 phosphate ABC transpo 100.0 7.9E-37 1.7E-41 309.0 22.0 194 1-199 34-235 (251)
168 PRK14235 phosphate transporter 100.0 1E-36 2.2E-41 311.0 22.8 194 1-199 48-249 (267)
169 PRK14262 phosphate ABC transpo 100.0 1.2E-36 2.5E-41 307.6 22.5 194 1-200 32-233 (250)
170 PRK14239 phosphate transporter 100.0 1.3E-36 2.8E-41 307.6 22.8 193 1-199 34-234 (252)
171 PRK03695 vitamin B12-transport 100.0 8.1E-37 1.8E-41 308.4 21.2 186 1-199 25-220 (248)
172 PRK13642 cbiO cobalt transport 100.0 1.8E-36 3.9E-41 310.8 23.4 188 1-200 36-228 (277)
173 PRK10762 D-ribose transporter 100.0 5.9E-37 1.3E-41 339.6 21.4 191 1-199 33-228 (501)
174 PRK14270 phosphate ABC transpo 100.0 1.5E-36 3.2E-41 307.1 22.4 193 1-199 33-233 (251)
175 PRK14237 phosphate transporter 100.0 1.8E-36 4E-41 309.1 23.0 193 1-199 49-249 (267)
176 PRK14274 phosphate ABC transpo 100.0 1.4E-36 3.1E-41 308.5 22.1 193 1-199 41-241 (259)
177 PRK14253 phosphate ABC transpo 100.0 1.5E-36 3.4E-41 306.5 22.1 193 1-199 32-231 (249)
178 COG0444 DppD ABC-type dipeptid 100.0 7.1E-37 1.5E-41 308.3 19.5 194 1-199 34-241 (316)
179 PRK14272 phosphate ABC transpo 100.0 2.2E-36 4.8E-41 305.8 23.1 194 1-199 33-234 (252)
180 PRK13547 hmuV hemin importer A 100.0 1E-36 2.2E-41 311.3 20.7 193 1-199 30-242 (272)
181 COG4181 Predicted ABC-type tra 100.0 5.2E-37 1.1E-41 280.0 15.9 180 1-192 39-226 (228)
182 PRK14240 phosphate transporter 100.0 2.7E-36 5.8E-41 304.9 22.8 193 1-199 32-232 (250)
183 PRK09700 D-allose transporter 100.0 1E-36 2.2E-41 338.5 21.3 191 1-199 34-232 (510)
184 TIGR03608 L_ocin_972_ABC putat 100.0 1.8E-36 4E-41 297.0 20.1 173 1-185 27-206 (206)
185 PRK14249 phosphate ABC transpo 100.0 3.7E-36 8.1E-41 304.1 22.9 193 1-199 33-233 (251)
186 PRK14271 phosphate ABC transpo 100.0 3.5E-36 7.7E-41 308.3 22.7 194 1-200 50-250 (276)
187 PRK14259 phosphate ABC transpo 100.0 2.3E-36 5E-41 308.7 21.2 192 1-200 42-252 (269)
188 PRK10418 nikD nickel transport 100.0 3.5E-36 7.6E-41 304.8 22.3 188 1-199 32-228 (254)
189 PRK14258 phosphate ABC transpo 100.0 5.1E-36 1.1E-40 304.9 23.0 195 1-200 36-244 (261)
190 PRK14261 phosphate ABC transpo 100.0 4.5E-36 9.8E-41 303.8 22.5 193 1-199 35-235 (253)
191 PRK14260 phosphate ABC transpo 100.0 4E-36 8.7E-41 305.3 22.0 193 1-199 36-241 (259)
192 PRK11701 phnK phosphonate C-P 100.0 5.1E-36 1.1E-40 304.3 22.4 189 1-199 35-239 (258)
193 PRK14236 phosphate transporter 100.0 5.1E-36 1.1E-40 306.6 22.6 193 1-199 54-254 (272)
194 PRK15439 autoinducer 2 ABC tra 100.0 2.4E-36 5.2E-41 335.2 21.8 184 1-199 40-227 (510)
195 TIGR02633 xylG D-xylose ABC tr 100.0 3E-36 6.6E-41 334.0 22.5 193 1-199 30-228 (500)
196 TIGR01257 rim_protein retinal- 100.0 2.1E-36 4.7E-41 367.8 23.0 193 1-204 1968-2162(2272)
197 PRK10982 galactose/methyl gala 100.0 3.2E-36 7E-41 333.0 22.2 191 1-199 27-221 (491)
198 cd03252 ABCC_Hemolysin The ABC 100.0 9.7E-37 2.1E-41 305.7 16.3 184 1-200 31-224 (237)
199 PRK14263 phosphate ABC transpo 100.0 6.9E-36 1.5E-40 303.8 22.6 191 1-199 37-243 (261)
200 PRK14275 phosphate ABC transpo 100.0 6.3E-36 1.4E-40 307.9 22.3 189 1-199 68-268 (286)
201 PRK14251 phosphate ABC transpo 100.0 7.9E-36 1.7E-40 301.7 22.4 193 1-199 33-233 (251)
202 PRK14248 phosphate ABC transpo 100.0 7E-36 1.5E-40 305.0 22.2 193 1-199 50-250 (268)
203 COG4988 CydD ABC-type transpor 100.0 3.1E-36 6.7E-41 322.9 20.2 184 1-200 350-542 (559)
204 PRK10419 nikE nickel transport 100.0 8E-36 1.7E-40 304.5 22.2 190 1-200 41-240 (268)
205 TIGR02982 heterocyst_DevA ABC 100.0 5.6E-36 1.2E-40 296.9 20.4 179 1-190 34-219 (220)
206 cd03233 ABC_PDR_domain1 The pl 100.0 6.2E-36 1.3E-40 292.7 20.2 163 1-194 36-202 (202)
207 cd03251 ABCC_MsbA MsbA is an e 100.0 1.7E-36 3.7E-41 303.2 16.3 185 1-201 31-225 (234)
208 cd03232 ABC_PDR_domain2 The pl 100.0 5.9E-36 1.3E-40 290.5 19.4 156 1-194 36-192 (192)
209 PRK10261 glutathione transport 100.0 7.5E-36 1.6E-40 338.1 23.3 190 1-200 353-552 (623)
210 PRK14255 phosphate ABC transpo 100.0 1.4E-35 3.1E-40 299.9 22.7 193 1-199 34-234 (252)
211 COG2274 SunT ABC-type bacterio 100.0 1E-36 2.2E-41 343.7 15.8 187 1-201 502-696 (709)
212 PRK15056 manganese/iron transp 100.0 6.7E-36 1.4E-40 305.8 20.5 190 1-199 36-228 (272)
213 PRK14257 phosphate ABC transpo 100.0 1.4E-35 2.9E-40 310.4 22.9 193 1-200 111-312 (329)
214 PRK14254 phosphate ABC transpo 100.0 1.4E-35 3.1E-40 305.1 22.5 191 1-199 68-267 (285)
215 PRK11174 cysteine/glutathione 100.0 2.6E-36 5.7E-41 340.9 18.5 183 1-200 379-571 (588)
216 COG4559 ABC-type hemin transpo 100.0 4.1E-36 8.8E-41 283.4 16.6 188 1-199 30-228 (259)
217 cd03213 ABCG_EPDR ABCG transpo 100.0 1.1E-35 2.3E-40 289.2 20.1 155 1-194 38-194 (194)
218 TIGR02323 CP_lyasePhnK phospho 100.0 1.5E-35 3.2E-40 300.0 21.8 189 1-199 32-236 (253)
219 PRK14266 phosphate ABC transpo 100.0 1.5E-35 3.3E-40 299.4 21.7 193 1-199 32-232 (250)
220 KOG0055 Multidrug/pheromone ex 100.0 3.2E-34 6.9E-39 328.7 35.0 187 1-201 382-576 (1228)
221 CHL00131 ycf16 sulfate ABC tra 100.0 2.6E-35 5.6E-40 298.0 23.0 194 1-199 36-239 (252)
222 PRK14238 phosphate transporter 100.0 1.6E-35 3.5E-40 302.7 21.6 193 1-199 53-253 (271)
223 cd03249 ABC_MTABC3_MDL1_MDL2 M 100.0 3E-36 6.5E-41 302.3 15.8 185 1-201 32-226 (238)
224 PRK11288 araG L-arabinose tran 100.0 1.3E-35 2.7E-40 328.9 22.1 187 1-195 33-223 (501)
225 PRK14246 phosphate ABC transpo 100.0 2.4E-35 5.2E-40 299.1 22.3 195 1-200 39-240 (257)
226 COG4598 HisP ABC-type histidin 100.0 3.4E-36 7.3E-41 276.6 14.1 189 1-199 35-239 (256)
227 PRK09700 D-allose transporter 100.0 9.5E-36 2.1E-40 330.7 20.6 188 1-196 292-493 (510)
228 PRK15134 microcin C ABC transp 100.0 1.8E-35 3.9E-40 329.8 22.7 192 1-200 38-245 (529)
229 PRK15134 microcin C ABC transp 100.0 1.8E-35 3.8E-40 329.9 22.6 189 1-199 315-513 (529)
230 COG1123 ATPase components of v 100.0 1.8E-35 4E-40 318.1 21.7 195 1-201 38-244 (539)
231 PRK13543 cytochrome c biogenes 100.0 1.7E-35 3.6E-40 292.3 19.8 173 1-187 40-212 (214)
232 PRK14243 phosphate transporter 100.0 2E-35 4.3E-40 300.9 21.0 192 1-200 39-247 (264)
233 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 100.0 2.8E-35 6.1E-40 292.7 21.4 174 1-194 51-224 (224)
234 cd03245 ABCC_bacteriocin_expor 100.0 6.9E-36 1.5E-40 296.0 17.0 179 1-194 33-220 (220)
235 PRK14265 phosphate ABC transpo 100.0 2.7E-35 6E-40 301.4 21.9 191 1-199 49-256 (274)
236 TIGR03269 met_CoM_red_A2 methy 100.0 2.3E-35 5.1E-40 328.3 22.8 194 1-203 29-260 (520)
237 PRK09580 sufC cysteine desulfu 100.0 4E-35 8.7E-40 295.9 21.8 195 1-200 30-234 (248)
238 PRK10762 D-ribose transporter 100.0 1.9E-35 4.2E-40 327.5 21.3 191 1-199 281-482 (501)
239 cd03254 ABCC_Glucan_exporter_l 100.0 6.8E-36 1.5E-40 297.9 15.9 185 1-200 32-225 (229)
240 PRK11176 lipid transporter ATP 100.0 8.5E-36 1.8E-40 336.4 18.7 185 1-200 372-566 (582)
241 PRK10261 glutathione transport 100.0 2.2E-35 4.7E-40 334.3 22.0 189 1-199 45-256 (623)
242 PRK13549 xylose transporter AT 100.0 1.7E-35 3.7E-40 328.3 20.7 192 1-199 291-492 (506)
243 TIGR03269 met_CoM_red_A2 methy 100.0 2.7E-35 5.9E-40 327.8 22.2 188 1-200 313-516 (520)
244 TIGR01166 cbiO cobalt transpor 100.0 3E-35 6.4E-40 285.0 19.2 161 1-172 21-188 (190)
245 PRK13538 cytochrome c biogenes 100.0 3.5E-35 7.5E-40 287.8 19.4 171 1-185 30-202 (204)
246 PRK11288 araG L-arabinose tran 100.0 1.7E-35 3.8E-40 327.8 19.3 191 1-199 282-483 (501)
247 PRK14264 phosphate ABC transpo 100.0 6.7E-35 1.4E-39 302.9 22.5 195 1-199 74-287 (305)
248 COG1123 ATPase components of v 100.0 2.8E-35 6.1E-40 316.7 20.1 190 1-199 320-517 (539)
249 TIGR03797 NHPM_micro_ABC2 NHPM 100.0 1.6E-35 3.5E-40 340.0 19.4 181 1-200 482-672 (686)
250 PRK15439 autoinducer 2 ABC tra 100.0 3.2E-35 7E-40 326.2 20.8 191 1-199 292-490 (510)
251 cd03253 ABCC_ATM1_transporter 100.0 1.5E-35 3.1E-40 296.9 16.2 184 1-200 30-223 (236)
252 PRK10790 putative multidrug tr 100.0 3E-35 6.6E-40 332.5 20.4 183 1-200 370-562 (592)
253 cd03231 ABC_CcmA_heme_exporter 100.0 5E-35 1.1E-39 286.1 18.9 168 1-185 29-198 (201)
254 cd03230 ABC_DR_subfamily_A Thi 100.0 4.3E-35 9.4E-40 279.7 17.9 143 1-190 29-173 (173)
255 PRK14252 phosphate ABC transpo 100.0 1.1E-34 2.3E-39 295.8 21.7 192 1-199 45-247 (265)
256 TIGR02633 xylG D-xylose ABC tr 100.0 5.1E-35 1.1E-39 324.1 21.0 190 1-197 289-488 (500)
257 PRK10247 putative ABC transpor 100.0 5.1E-35 1.1E-39 291.0 18.7 180 1-195 36-221 (225)
258 PRK13546 teichoic acids export 100.0 2.3E-34 5.1E-39 292.5 23.8 180 1-201 53-232 (264)
259 cd03215 ABC_Carb_Monos_II This 100.0 5.6E-35 1.2E-39 281.3 18.2 147 1-190 29-182 (182)
260 TIGR03796 NHPM_micro_ABC1 NHPM 100.0 2.5E-35 5.4E-40 339.8 17.8 183 1-201 508-700 (710)
261 COG4161 ArtP ABC-type arginine 100.0 4.2E-35 9.1E-40 264.9 15.3 187 1-197 31-226 (242)
262 COG4604 CeuD ABC-type enteroch 100.0 9.7E-36 2.1E-40 277.6 11.2 191 1-200 30-224 (252)
263 COG1132 MdlB ABC-type multidru 100.0 2.5E-35 5.4E-40 331.5 16.7 187 1-201 358-552 (567)
264 cd03217 ABC_FeS_Assembly ABC-t 100.0 1.3E-34 2.8E-39 282.9 19.3 162 1-203 29-195 (200)
265 PRK11160 cysteine/glutathione 100.0 5.2E-35 1.1E-39 328.9 18.6 184 1-200 369-561 (574)
266 cd03289 ABCC_CFTR2 The CFTR su 100.0 8.2E-35 1.8E-39 297.2 18.3 184 1-201 33-225 (275)
267 cd03237 ABC_RNaseL_inhibitor_d 100.0 2.2E-34 4.7E-39 289.9 20.9 174 1-198 28-204 (246)
268 TIGR02324 CP_lyasePhnL phospho 100.0 1.9E-34 4E-39 286.7 20.1 175 1-186 37-223 (224)
269 PRK13539 cytochrome c biogenes 100.0 1.3E-34 2.8E-39 284.5 18.2 170 1-187 31-200 (207)
270 PRK09544 znuC high-affinity zi 100.0 2E-34 4.4E-39 291.2 19.8 172 1-199 33-207 (251)
271 PRK13545 tagH teichoic acids e 100.0 4E-34 8.7E-39 308.9 23.3 182 1-203 53-234 (549)
272 TIGR01189 ccmA heme ABC export 100.0 1.8E-34 3.8E-39 281.5 18.5 167 1-184 29-197 (198)
273 TIGR01193 bacteriocin_ABC ABC- 100.0 5.6E-35 1.2E-39 336.6 17.4 185 1-201 503-697 (708)
274 KOG0057 Mitochondrial Fe/S clu 100.0 2.9E-35 6.3E-40 310.9 13.6 184 1-201 381-574 (591)
275 cd03248 ABCC_TAP TAP, the Tran 100.0 3.2E-35 7E-40 292.5 13.2 176 1-190 43-226 (226)
276 KOG0058 Peptide exporter, ABC 100.0 3.3E-35 7.1E-40 320.4 14.2 186 1-200 497-690 (716)
277 TIGR03375 type_I_sec_LssB type 100.0 7.7E-35 1.7E-39 334.8 18.1 185 1-201 494-688 (694)
278 COG1129 MglA ABC-type sugar tr 100.0 2.3E-34 5E-39 307.8 20.1 187 1-195 37-228 (500)
279 cd03229 ABC_Class3 This class 100.0 1.7E-34 3.6E-39 277.0 16.7 144 1-189 29-178 (178)
280 cd03244 ABCC_MRP_domain2 Domai 100.0 1.7E-34 3.7E-39 286.3 17.1 178 1-195 33-220 (221)
281 PRK13657 cyclic beta-1,2-gluca 100.0 1.6E-34 3.4E-39 326.3 19.1 184 1-200 364-557 (588)
282 TIGR00958 3a01208 Conjugate Tr 100.0 1E-34 2.2E-39 333.9 17.4 183 1-201 510-702 (711)
283 PRK10938 putative molybdenum t 100.0 1.6E-34 3.5E-39 319.4 18.3 180 1-199 32-222 (490)
284 TIGR01842 type_I_sec_PrtD type 100.0 1.5E-34 3.2E-39 323.6 18.2 187 1-200 347-541 (544)
285 cd03246 ABCC_Protease_Secretio 100.0 2.6E-34 5.6E-39 274.4 16.5 140 1-190 31-173 (173)
286 COG4987 CydC ABC-type transpor 100.0 5.5E-35 1.2E-39 308.6 13.0 185 1-201 367-561 (573)
287 TIGR02203 MsbA_lipidA lipid A 100.0 2.2E-34 4.8E-39 324.2 18.8 185 1-200 361-555 (571)
288 cd03288 ABCC_SUR2 The SUR doma 100.0 4.1E-34 8.9E-39 290.2 17.7 183 1-200 50-242 (257)
289 cd03369 ABCC_NFT1 Domain 2 of 100.0 6.5E-34 1.4E-38 279.4 18.3 168 1-196 37-207 (207)
290 PRK10535 macrolide transporter 100.0 3.8E-33 8.3E-38 317.1 27.3 187 1-199 37-230 (648)
291 TIGR01846 type_I_sec_HlyB type 100.0 3.2E-34 7E-39 329.5 18.2 184 1-200 486-679 (694)
292 cd03247 ABCC_cytochrome_bd The 100.0 4.6E-34 1E-38 273.9 16.2 146 1-194 31-178 (178)
293 PRK13540 cytochrome c biogenes 100.0 8.4E-34 1.8E-38 277.2 17.6 166 1-183 30-197 (200)
294 PRK15177 Vi polysaccharide exp 100.0 1.4E-33 2.9E-38 278.4 18.8 180 1-205 16-196 (213)
295 PRK10789 putative multidrug tr 100.0 6.3E-34 1.4E-38 320.0 18.6 184 1-200 344-537 (569)
296 COG4172 ABC-type uncharacteriz 100.0 1.4E-33 3E-38 287.6 19.0 190 1-199 316-514 (534)
297 TIGR02204 MsbA_rel ABC transpo 100.0 6.2E-34 1.4E-38 320.9 17.7 184 1-200 369-562 (576)
298 COG4619 ABC-type uncharacteriz 100.0 1.7E-34 3.8E-39 262.7 10.2 177 1-190 32-212 (223)
299 TIGR01192 chvA glucan exporter 100.0 1.1E-33 2.4E-38 318.7 18.9 184 1-200 364-557 (585)
300 cd03290 ABCC_SUR1_N The SUR do 100.0 2.1E-33 4.6E-38 278.0 18.5 173 1-189 30-218 (218)
301 cd03214 ABC_Iron-Siderophores_ 100.0 8E-34 1.7E-38 272.8 14.7 149 1-194 28-180 (180)
302 COG0396 sufC Cysteine desulfur 100.0 6.8E-33 1.5E-37 265.4 20.2 202 2-210 34-242 (251)
303 COG4618 ArpD ABC-type protease 100.0 8E-34 1.7E-38 297.2 14.5 191 1-204 365-563 (580)
304 PRK10982 galactose/methyl gala 100.0 3.4E-33 7.3E-38 308.9 19.6 188 1-196 277-475 (491)
305 COG3845 ABC-type uncharacteriz 100.0 4.5E-33 9.8E-38 292.1 19.1 187 1-195 33-223 (501)
306 PRK13541 cytochrome c biogenes 100.0 4.2E-33 9E-38 271.2 17.3 165 1-183 29-193 (195)
307 cd03250 ABCC_MRP_domain1 Domai 100.0 4.4E-33 9.6E-38 272.8 16.9 163 1-189 34-204 (204)
308 PTZ00265 multidrug resistance 100.0 1.1E-33 2.4E-38 343.5 15.3 187 1-200 1197-1451(1466)
309 KOG0055 Multidrug/pheromone ex 100.0 3.4E-33 7.4E-38 320.3 17.7 187 1-201 1019-1213(1228)
310 cd03228 ABCC_MRP_Like The MRP 100.0 6.3E-33 1.4E-37 264.3 15.9 138 1-189 31-171 (171)
311 cd03291 ABCC_CFTR1 The CFTR su 100.0 2.2E-32 4.8E-37 280.2 20.5 173 1-200 66-246 (282)
312 COG4586 ABC-type uncharacteriz 100.0 5.3E-33 1.2E-37 271.3 14.5 193 1-204 53-249 (325)
313 COG1101 PhnK ABC-type uncharac 100.0 1.6E-32 3.6E-37 259.5 16.3 185 1-193 35-230 (263)
314 cd03236 ABC_RNaseL_inhibitor_d 100.0 2.3E-32 5.1E-37 276.4 17.9 176 1-194 29-220 (255)
315 cd03216 ABC_Carb_Monos_I This 100.0 2.8E-32 6.1E-37 257.8 17.1 130 1-192 29-162 (163)
316 COG1119 ModF ABC-type molybden 100.0 8.5E-33 1.9E-37 267.8 13.7 186 2-195 61-256 (257)
317 PRK15064 ABC transporter ATP-b 100.0 3.2E-32 6.9E-37 303.8 19.9 181 1-200 30-241 (530)
318 KOG0059 Lipid exporter ABCA1 a 100.0 1.3E-32 2.8E-37 321.3 17.0 193 2-205 595-791 (885)
319 PRK10938 putative molybdenum t 100.0 2.2E-32 4.8E-37 302.4 17.6 186 1-194 289-485 (490)
320 TIGR02857 CydD thiol reductant 100.0 1.6E-32 3.5E-37 306.3 16.0 169 1-185 351-529 (529)
321 PRK11819 putative ABC transpor 100.0 7.3E-32 1.6E-36 302.2 20.8 179 1-199 36-248 (556)
322 PLN03232 ABC transporter C fam 100.0 2.8E-32 6.1E-37 333.9 18.9 183 1-200 1265-1457(1495)
323 COG4674 Uncharacterized ABC-ty 100.0 1.1E-32 2.4E-37 256.8 11.6 190 2-200 35-234 (249)
324 TIGR02868 CydC thiol reductant 100.0 1.4E-32 3.1E-37 306.7 14.6 157 1-171 364-529 (529)
325 PRK15064 ABC transporter ATP-b 100.0 6.8E-32 1.5E-36 301.1 19.9 173 1-200 348-524 (530)
326 cd03223 ABCD_peroxisomal_ALDP 100.0 7.7E-32 1.7E-36 255.6 17.2 134 1-188 30-163 (166)
327 PRK10522 multidrug transporter 100.0 5.4E-32 1.2E-36 303.0 18.6 173 1-193 352-530 (547)
328 PLN03130 ABC transporter C fam 100.0 4.6E-32 9.9E-37 332.4 19.6 184 1-201 1268-1461(1622)
329 PRK13409 putative ATPase RIL; 100.0 9E-32 1.9E-36 301.5 20.0 168 1-195 368-536 (590)
330 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 1.1E-31 2.4E-36 300.7 20.1 181 1-201 34-248 (552)
331 TIGR01194 cyc_pep_trnsptr cycl 100.0 1.5E-31 3.2E-36 299.9 18.4 176 1-193 371-551 (555)
332 PTZ00243 ABC transporter; Prov 100.0 1.4E-31 2.9E-36 327.8 19.3 183 1-200 1339-1532(1560)
333 TIGR00957 MRP_assoc_pro multi 100.0 1.4E-31 3.1E-36 328.1 19.3 184 1-201 1315-1508(1522)
334 PTZ00265 multidrug resistance 100.0 1.8E-31 3.9E-36 324.4 19.2 182 1-188 414-655 (1466)
335 PRK11819 putative ABC transpor 100.0 8.4E-31 1.8E-35 293.7 20.3 174 1-198 353-530 (556)
336 cd03222 ABC_RNaseL_inhibitor T 100.0 8E-31 1.7E-35 250.2 17.0 129 1-197 28-159 (177)
337 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 1.2E-30 2.6E-35 292.3 20.9 173 1-197 351-527 (552)
338 KOG0056 Heavy metal exporter H 100.0 8.1E-32 1.8E-36 279.1 10.3 188 1-200 567-760 (790)
339 COG4608 AppF ABC-type oligopep 100.0 6.6E-31 1.4E-35 259.9 16.2 156 1-200 42-198 (268)
340 TIGR01271 CFTR_protein cystic 100.0 6.9E-31 1.5E-35 321.3 19.6 182 1-200 1248-1439(1490)
341 COG4172 ABC-type uncharacteriz 100.0 1E-30 2.2E-35 266.8 17.1 194 1-199 39-245 (534)
342 PRK10636 putative ABC transpor 100.0 3.8E-30 8.3E-35 291.9 20.2 173 1-201 341-517 (638)
343 cd03238 ABC_UvrA The excision 100.0 4.5E-30 9.8E-35 244.8 17.3 144 1-194 24-170 (176)
344 PRK13409 putative ATPase RIL; 100.0 1.7E-30 3.7E-35 291.2 16.4 167 1-188 102-287 (590)
345 COG1134 TagH ABC-type polysacc 100.0 1.5E-29 3.2E-34 245.6 19.1 186 1-206 56-241 (249)
346 PRK11147 ABC transporter ATPas 100.0 1E-29 2.2E-34 288.9 19.7 175 1-199 348-526 (635)
347 PLN03073 ABC transporter F fam 100.0 1.9E-29 4.1E-34 287.7 21.3 176 1-202 538-715 (718)
348 COG4167 SapF ABC-type antimicr 100.0 2.4E-29 5.3E-34 232.0 17.4 189 1-199 42-237 (267)
349 PLN03232 ABC transporter C fam 100.0 8.3E-30 1.8E-34 312.2 18.7 174 1-200 646-827 (1495)
350 COG4136 ABC-type uncharacteriz 100.0 4.4E-30 9.5E-35 229.9 11.6 163 1-172 31-196 (213)
351 COG4133 CcmA ABC-type transpor 100.0 6.9E-30 1.5E-34 237.6 13.0 159 2-173 32-192 (209)
352 cd03221 ABCF_EF-3 ABCF_EF-3 E 100.0 1.8E-29 3.8E-34 233.7 15.6 116 1-189 29-144 (144)
353 PLN03130 ABC transporter C fam 100.0 1.1E-29 2.5E-34 311.4 18.4 173 1-200 646-827 (1622)
354 TIGR00954 3a01203 Peroxysomal 100.0 1.2E-29 2.5E-34 289.0 17.0 169 1-187 481-653 (659)
355 COG5265 ATM1 ABC-type transpor 100.0 2.5E-30 5.5E-35 265.5 9.7 187 1-201 292-486 (497)
356 PRK10636 putative ABC transpor 100.0 4.4E-29 9.5E-34 283.3 19.3 179 1-199 30-234 (638)
357 TIGR01271 CFTR_protein cystic 100.0 3.9E-29 8.4E-34 305.9 19.8 177 1-200 455-635 (1490)
358 cd00267 ABC_ATPase ABC (ATP-bi 100.0 1.2E-28 2.6E-33 231.5 15.9 127 1-189 28-157 (157)
359 PRK11147 ABC transporter ATPas 100.0 1.4E-28 3E-33 279.6 19.6 177 1-199 32-241 (635)
360 TIGR00957 MRP_assoc_pro multi 100.0 1.1E-28 2.5E-33 302.7 18.6 178 1-200 667-849 (1522)
361 COG4107 PhnK ABC-type phosphon 100.0 4.4E-28 9.6E-33 222.0 13.6 187 1-200 35-240 (258)
362 PTZ00243 ABC transporter; Prov 100.0 6.7E-28 1.5E-32 295.4 18.6 176 1-200 689-869 (1560)
363 cd03271 ABC_UvrA_II The excisi 100.0 2.3E-27 5E-32 239.4 17.6 180 1-196 24-261 (261)
364 cd03278 ABC_SMC_barmotin Barmo 99.9 1.1E-27 2.4E-32 233.2 11.7 155 1-187 25-190 (197)
365 cd03270 ABC_UvrA_I The excisio 99.9 1.2E-26 2.5E-31 231.1 19.1 100 88-194 118-226 (226)
366 COG0488 Uup ATPase components 99.9 5.9E-27 1.3E-31 256.8 17.0 178 1-198 32-237 (530)
367 KOG0054 Multidrug resistance-a 99.9 7.1E-27 1.5E-31 274.3 17.4 174 1-200 550-730 (1381)
368 COG4138 BtuD ABC-type cobalami 99.9 6E-28 1.3E-32 221.3 5.6 182 2-200 29-220 (248)
369 PF00005 ABC_tran: ABC transpo 99.9 3.3E-27 7.2E-32 216.0 10.4 121 1-140 14-137 (137)
370 PLN03073 ABC transporter F fam 99.9 4E-27 8.6E-32 268.7 13.1 185 1-199 206-429 (718)
371 cd03272 ABC_SMC3_euk Eukaryoti 99.9 3E-26 6.6E-31 230.5 13.6 173 1-186 26-234 (243)
372 cd03273 ABC_SMC2_euk Eukaryoti 99.9 8.6E-27 1.9E-31 235.8 8.8 181 1-186 28-242 (251)
373 COG1129 MglA ABC-type sugar tr 99.9 5.6E-25 1.2E-29 235.8 18.9 188 1-196 288-485 (500)
374 cd03240 ABC_Rad50 The catalyti 99.9 9E-26 1.9E-30 221.1 11.2 156 1-187 25-197 (204)
375 KOG0054 Multidrug resistance-a 99.9 3.6E-25 7.8E-30 260.0 15.9 184 1-201 1169-1362(1381)
376 COG4778 PhnL ABC-type phosphon 99.9 3E-25 6.5E-30 202.8 11.1 177 1-187 40-227 (235)
377 cd03274 ABC_SMC4_euk Eukaryoti 99.9 1.1E-26 2.3E-31 228.8 1.5 166 1-187 28-204 (212)
378 cd03279 ABC_sbcCD SbcCD and ot 99.9 4.5E-25 9.8E-30 217.7 11.2 168 1-189 31-210 (213)
379 COG0488 Uup ATPase components 99.9 6E-24 1.3E-28 233.1 17.7 172 1-201 351-525 (530)
380 PRK00635 excinuclease ABC subu 99.9 1.3E-22 2.7E-27 244.6 21.1 137 56-200 759-905 (1809)
381 cd03275 ABC_SMC1_euk Eukaryoti 99.9 2.3E-23 5E-28 210.2 8.6 177 1-187 25-233 (247)
382 PRK00349 uvrA excinuclease ABC 99.9 6.5E-22 1.4E-26 229.6 19.9 125 60-200 792-926 (943)
383 cd03276 ABC_SMC6_euk Eukaryoti 99.9 2.4E-22 5.2E-27 195.9 13.1 155 2-189 25-192 (198)
384 PF01061 ABC2_membrane: ABC-2 99.9 4.2E-24 9.1E-29 208.1 0.4 208 286-496 1-210 (210)
385 COG3845 ABC-type uncharacteriz 99.9 2.7E-21 5.8E-26 203.7 16.4 191 1-198 287-489 (501)
386 COG4178 ABC-type uncharacteriz 99.9 2.2E-21 4.8E-26 212.0 13.6 166 1-187 422-588 (604)
387 COG1245 Predicted ATPase, RNas 99.9 6E-21 1.3E-25 198.0 14.9 160 1-186 370-530 (591)
388 COG4615 PvdE ABC-type sideroph 99.9 6.1E-22 1.3E-26 202.1 7.1 174 2-194 353-530 (546)
389 KOG0927 Predicted transporter 99.8 2.9E-21 6.2E-26 204.3 11.5 172 1-198 419-593 (614)
390 TIGR00630 uvra excinuclease AB 99.8 2.8E-20 6E-25 215.7 20.8 125 59-199 789-923 (924)
391 cd03277 ABC_SMC5_euk Eukaryoti 99.8 6E-20 1.3E-24 181.0 11.7 81 108-189 123-211 (213)
392 COG4170 SapD ABC-type antimicr 99.8 2.4E-20 5.1E-25 176.1 8.0 197 2-201 37-248 (330)
393 KOG0927 Predicted transporter 99.8 8.7E-20 1.9E-24 193.2 10.9 184 1-200 104-308 (614)
394 cd03239 ABC_SMC_head The struc 99.8 1.1E-18 2.3E-23 167.3 14.7 74 112-187 95-172 (178)
395 COG1245 Predicted ATPase, RNas 99.8 1.7E-19 3.7E-24 187.3 9.4 165 1-187 103-288 (591)
396 KOG0062 ATPase component of AB 99.8 2.5E-19 5.5E-24 188.7 8.9 171 2-199 110-283 (582)
397 cd03280 ABC_MutS2 MutS2 homolo 99.8 2E-19 4.4E-24 175.7 6.7 82 110-194 90-172 (200)
398 KOG0066 eIF2-interacting prote 99.8 1.9E-18 4.2E-23 177.9 11.9 159 1-187 616-776 (807)
399 KOG0060 Long-chain acyl-CoA tr 99.8 3.5E-18 7.6E-23 182.3 13.2 172 1-187 464-641 (659)
400 cd03241 ABC_RecN RecN ATPase i 99.8 5.9E-18 1.3E-22 173.6 13.3 77 110-189 169-249 (276)
401 KOG2355 Predicted ABC-type tra 99.8 7.9E-18 1.7E-22 158.7 12.8 181 2-202 44-238 (291)
402 PRK00349 uvrA excinuclease ABC 99.8 6E-18 1.3E-22 196.7 14.8 136 57-200 434-584 (943)
403 TIGR00630 uvra excinuclease AB 99.7 9.9E-18 2.1E-22 194.5 15.6 136 57-200 432-582 (924)
404 cd03283 ABC_MutS-like MutS-lik 99.7 1.9E-18 4.1E-23 168.6 8.2 133 1-185 28-163 (199)
405 KOG0062 ATPase component of AB 99.7 7.6E-18 1.7E-22 177.7 12.3 172 2-198 394-566 (582)
406 cd03227 ABC_Class2 ABC-type Cl 99.7 6.7E-18 1.5E-22 159.4 10.7 74 112-187 78-155 (162)
407 COG0178 UvrA Excinuclease ATPa 99.7 2E-16 4.2E-21 174.7 15.2 128 59-201 783-919 (935)
408 PRK00635 excinuclease ABC subu 99.7 6.6E-16 1.4E-20 187.1 15.7 134 57-199 424-570 (1809)
409 cd03242 ABC_RecF RecF is a rec 99.7 1.1E-15 2.4E-20 156.3 14.8 77 109-190 181-269 (270)
410 cd03285 ABC_MSH2_euk MutS2 hom 99.7 7.7E-17 1.7E-21 159.8 6.1 136 1-195 33-175 (222)
411 KOG0064 Peroxisomal long-chain 99.6 2.7E-16 5.8E-21 165.9 8.5 164 1-185 511-681 (728)
412 cd03243 ABC_MutS_homologs The 99.6 9.8E-17 2.1E-21 157.0 4.6 85 112-199 92-177 (202)
413 TIGR02858 spore_III_AA stage I 99.6 8.3E-16 1.8E-20 156.1 11.3 138 1-199 114-267 (270)
414 COG2401 ABC-type ATPase fused 99.6 4.5E-15 9.7E-20 153.0 10.8 168 1-191 412-588 (593)
415 KOG0066 eIF2-interacting prote 99.6 7.5E-16 1.6E-20 159.0 2.0 185 2-198 294-496 (807)
416 smart00534 MUTSac ATPase domai 99.5 5.6E-15 1.2E-19 142.6 4.0 80 110-192 60-141 (185)
417 TIGR01247 drrB daunorubicin re 99.5 3.8E-12 8.3E-17 127.4 24.3 195 294-493 1-203 (236)
418 KOG0063 RNAse L inhibitor, ABC 99.5 4.9E-14 1.1E-18 145.8 10.4 160 2-186 371-531 (592)
419 cd03282 ABC_MSH4_euk MutS4 hom 99.5 2.4E-14 5.3E-19 140.1 7.2 120 1-172 32-152 (204)
420 cd03284 ABC_MutS1 MutS1 homolo 99.5 3.9E-14 8.4E-19 140.0 8.3 142 1-200 33-180 (216)
421 PF02463 SMC_N: RecF/RecN/SMC 99.4 7.8E-13 1.7E-17 131.0 10.9 88 85-186 121-212 (220)
422 TIGR00025 Mtu_efflux ABC trans 99.4 8.1E-11 1.7E-15 117.6 25.1 187 300-492 2-194 (232)
423 TIGR03062 pip_yhgE_Cterm YhgE/ 99.4 8.9E-12 1.9E-16 122.3 17.5 148 376-585 58-205 (208)
424 cd03281 ABC_MSH5_euk MutS5 hom 99.4 1.4E-12 3.1E-17 128.6 10.4 58 115-172 94-155 (213)
425 TIGR01291 nodJ ABC-2 type tran 99.4 2.2E-10 4.8E-15 116.1 26.3 200 288-493 7-215 (253)
426 PTZ00132 GTP-binding nuclear p 99.4 1.2E-12 2.5E-17 129.3 7.3 45 115-159 156-205 (215)
427 TIGR03861 phenyl_ABC_PedC alco 99.3 7.9E-10 1.7E-14 112.0 27.1 204 285-492 1-218 (253)
428 KOG0063 RNAse L inhibitor, ABC 99.3 4.8E-12 1E-16 131.2 9.2 98 84-187 191-288 (592)
429 TIGR00634 recN DNA repair prot 99.3 4E-12 8.7E-17 142.9 9.4 77 110-189 439-519 (563)
430 PRK10869 recombination and rep 99.3 9.8E-12 2.1E-16 138.9 10.1 76 110-188 429-508 (553)
431 TIGR01069 mutS2 MutS2 family p 99.3 5.6E-12 1.2E-16 145.3 7.6 63 110-173 384-447 (771)
432 PHA02562 46 endonuclease subun 99.3 1E-11 2.2E-16 140.1 9.0 79 108-190 465-555 (562)
433 TIGR00618 sbcc exonuclease Sbc 99.3 1.6E-11 3.5E-16 147.5 11.1 81 107-188 946-1036(1042)
434 PF13304 AAA_21: AAA domain; P 99.2 3.5E-11 7.5E-16 119.5 9.5 64 109-172 234-300 (303)
435 COG0178 UvrA Excinuclease ATPa 99.2 1.3E-10 2.8E-15 129.3 14.3 138 57-201 426-577 (935)
436 PRK15066 inner membrane transp 99.2 2.5E-08 5.3E-13 101.4 28.4 205 284-492 6-216 (257)
437 PRK00409 recombination and DNA 99.2 2.5E-11 5.5E-16 140.3 6.9 80 110-192 389-469 (782)
438 PRK13695 putative NTPase; Prov 99.1 2.6E-11 5.5E-16 115.8 3.3 77 111-193 78-156 (174)
439 cd01124 KaiC KaiC is a circadi 99.1 6E-10 1.3E-14 107.1 12.7 79 108-186 68-163 (187)
440 cd01128 rho_factor Transcripti 99.1 8.8E-11 1.9E-15 118.2 5.4 77 108-190 126-211 (249)
441 PRK03918 chromosome segregatio 99.1 2.5E-10 5.4E-15 135.5 9.6 78 108-187 785-868 (880)
442 cd01120 RecA-like_NTPases RecA 99.1 4.9E-10 1.1E-14 104.2 8.5 62 112-173 68-139 (165)
443 cd03287 ABC_MSH3_euk MutS3 hom 99.0 1.1E-09 2.4E-14 108.4 10.7 61 117-179 98-160 (222)
444 PRK10246 exonuclease subunit S 99.0 6.5E-10 1.4E-14 133.3 10.8 80 107-187 945-1032(1047)
445 PRK13830 conjugal transfer pro 99.0 2.6E-09 5.6E-14 124.9 15.4 69 127-196 650-728 (818)
446 COG3910 Predicted ATPase [Gene 99.0 1E-09 2.2E-14 103.0 9.5 67 105-172 123-189 (233)
447 PRK08533 flagellar accessory p 99.0 2.5E-09 5.4E-14 106.8 12.2 75 112-186 96-184 (230)
448 TIGR02788 VirB11 P-type DNA tr 99.0 2.3E-09 5E-14 111.8 12.1 70 122-200 211-280 (308)
449 TIGR00606 rad50 rad50. This fa 99.0 1.4E-09 3E-14 133.6 9.7 69 110-179 1198-1277(1311)
450 PRK01156 chromosome segregatio 99.0 1.9E-09 4.1E-14 128.2 10.5 77 108-186 798-883 (895)
451 COG0842 ABC-type multidrug tra 98.9 1.2E-07 2.6E-12 96.1 21.9 167 364-589 118-285 (286)
452 PRK07721 fliI flagellum-specif 98.9 1.3E-08 2.9E-13 110.1 15.2 160 1-199 161-341 (438)
453 cd01131 PilT Pilus retraction 98.9 8.9E-09 1.9E-13 100.5 10.1 57 121-186 66-122 (198)
454 TIGR02168 SMC_prok_B chromosom 98.9 2.4E-09 5.3E-14 130.6 7.6 76 108-186 1086-1165(1179)
455 cd00820 PEPCK_HprK Phosphoenol 98.9 1.6E-09 3.5E-14 94.2 3.7 58 1-69 18-78 (107)
456 PRK00064 recF recombination pr 98.8 6.6E-09 1.4E-13 110.7 8.5 78 109-190 271-359 (361)
457 cd03286 ABC_MSH6_euk MutS6 hom 98.8 4.5E-09 9.7E-14 103.9 6.1 57 116-172 96-154 (218)
458 PF06422 PDR_CDR: CDR ABC tran 98.8 5.6E-09 1.2E-13 90.7 5.6 61 523-589 15-76 (103)
459 TIGR02169 SMC_prok_A chromosom 98.8 9.6E-09 2.1E-13 125.4 8.0 77 108-187 1071-1151(1164)
460 PRK02224 chromosome segregatio 98.8 1.5E-08 3.2E-13 120.5 9.2 77 109-187 779-868 (880)
461 TIGR01248 drrC daunorubicin re 98.7 4.5E-07 9.7E-12 84.7 15.3 130 359-492 14-146 (152)
462 smart00382 AAA ATPases associa 98.7 6.2E-07 1.4E-11 80.2 14.3 59 111-169 60-124 (148)
463 PRK06067 flagellar accessory p 98.6 2.1E-07 4.5E-12 93.2 11.6 76 112-187 101-187 (234)
464 cd01125 repA Hexameric Replica 98.6 1.8E-07 3.9E-12 94.0 11.0 132 2-172 5-160 (239)
465 PRK13891 conjugal transfer pro 98.6 4.5E-07 9.8E-12 106.7 14.9 69 122-191 680-751 (852)
466 PRK06793 fliI flagellum-specif 98.6 1E-07 2.2E-12 102.6 8.5 140 1-195 159-305 (432)
467 TIGR00611 recf recF protein. A 98.6 8E-08 1.7E-12 102.4 7.2 60 110-172 274-342 (365)
468 PRK14079 recF recombination pr 98.6 1.4E-07 3E-12 100.1 7.9 77 111-195 263-348 (349)
469 COG0419 SbcC ATPase involved i 98.5 3.9E-07 8.5E-12 108.4 9.9 78 108-187 812-897 (908)
470 TIGR01420 pilT_fam pilus retra 98.4 9.3E-07 2E-11 93.7 10.0 56 122-186 188-243 (343)
471 PRK06995 flhF flagellar biosyn 98.4 1.1E-06 2.4E-11 96.0 9.8 137 1-169 259-400 (484)
472 cd02023 UMPK Uridine monophosp 98.4 2.9E-07 6.3E-12 89.7 4.7 112 1-144 2-113 (198)
473 cd01130 VirB11-like_ATPase Typ 98.3 1.1E-06 2.3E-11 84.9 7.6 71 1-73 28-100 (186)
474 TIGR02655 circ_KaiC circadian 98.3 1.8E-07 3.8E-12 103.6 0.7 82 90-186 99-190 (484)
475 TIGR02680 conserved hypothetic 98.3 1.1E-06 2.3E-11 108.1 7.4 61 108-171 1244-1316(1353)
476 PRK13898 type IV secretion sys 98.2 1.4E-05 3E-10 94.1 14.7 49 125-173 638-687 (800)
477 TIGR03518 ABC_perm_GldF glidin 98.2 0.00022 4.7E-09 71.8 20.5 187 289-489 2-208 (240)
478 PRK05399 DNA mismatch repair p 98.2 3.2E-06 6.9E-11 99.4 7.4 68 110-181 665-738 (854)
479 PF12679 ABC2_membrane_2: ABC- 98.2 0.00082 1.8E-08 68.4 24.3 95 364-458 88-199 (277)
480 PRK13873 conjugal transfer ATP 98.1 1.6E-05 3.5E-10 93.6 13.0 46 127-172 633-679 (811)
481 PRK00454 engB GTP-binding prot 98.1 3.1E-05 6.8E-10 74.6 12.4 68 85-160 125-195 (196)
482 PF13558 SbcCD_C: Putative exo 98.1 5.6E-06 1.2E-10 70.2 5.8 48 109-156 30-90 (90)
483 TIGR03881 KaiC_arch_4 KaiC dom 98.1 9.7E-07 2.1E-11 87.9 1.1 40 147-186 141-188 (229)
484 COG1682 TagG ABC-type polysacc 98.1 0.0015 3.2E-08 66.5 24.0 203 284-498 16-226 (263)
485 PLN03210 Resistant to P. syrin 98.0 1.4E-05 3E-10 97.7 9.5 151 1-207 210-364 (1153)
486 PRK15176 Vi polysaccharide exp 98.0 0.0048 1E-07 63.0 26.2 70 425-497 157-229 (264)
487 TIGR00152 dephospho-CoA kinase 98.0 6E-06 1.3E-10 79.8 4.4 73 114-188 60-133 (188)
488 cd01876 YihA_EngB The YihA (En 98.0 1.3E-05 2.8E-10 74.3 6.4 65 85-157 100-169 (170)
489 PRK09825 idnK D-gluconate kina 97.9 4.8E-06 1E-10 79.7 2.6 62 1-68 6-69 (176)
490 TIGR02903 spore_lon_C ATP-depe 97.9 2.7E-05 5.9E-10 88.6 8.6 108 1-156 178-291 (615)
491 cd00009 AAA The AAA+ (ATPases 97.9 5.9E-05 1.3E-09 67.9 9.2 55 117-172 72-131 (151)
492 TIGR01026 fliI_yscN ATPase Fli 97.9 2.9E-05 6.3E-10 84.5 7.4 63 134-199 275-346 (440)
493 PRK14088 dnaA chromosomal repl 97.8 8.2E-05 1.8E-09 81.5 9.8 93 128-223 193-294 (440)
494 PF12698 ABC2_membrane_3: ABC- 97.8 4.8E-06 1E-10 86.4 0.0 127 360-492 183-314 (344)
495 PRK13764 ATPase; Provisional 97.8 0.00011 2.3E-09 82.6 10.3 63 126-196 321-400 (602)
496 TIGR00554 panK_bact pantothena 97.8 1.5E-05 3.1E-10 82.2 2.9 71 1-73 65-138 (290)
497 TIGR03238 dnd_assoc_3 dnd syst 97.7 2.4E-05 5.1E-10 84.6 4.4 37 1-40 35-71 (504)
498 TIGR02524 dot_icm_DotB Dot/Icm 97.7 7.1E-05 1.5E-09 79.6 7.8 52 125-185 208-259 (358)
499 PRK09270 nucleoside triphospha 97.7 2.5E-05 5.4E-10 78.0 3.9 69 1-73 36-108 (229)
500 PRK11545 gntK gluconate kinase 97.7 9.1E-06 2E-10 76.8 0.6 59 4-68 1-61 (163)
No 1
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=4.2e-109 Score=925.72 Aligned_cols=551 Identities=42% Similarity=0.713 Sum_probs=490.4
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCC-CceeEEEECCEecCcccccceeEEEccCCCCCCCCCHHHHHHHHHHccCCCCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKE-SLQGAVTLNGEVLESKLLKIISAYVMQDDLLFPMLTVEETLMFAAEFRLPRSVT 79 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~-~~~G~I~i~g~~~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~ 79 (592)
+|||||||||||||||+|+|+...+ ..+|+|++||++.+.+.+++.+|||+|||.++|+|||+|+|.|+|++|+|.+.+
T Consensus 59 ~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~~~~~~~~~~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~~~ 138 (613)
T KOG0061|consen 59 LAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRPRDSRSFRKISGYVQQDDVLLPTLTVRETLRFSALLRLPSSLS 138 (613)
T ss_pred EEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCccCchhhhhheeEEEcccccccccccHHHHHHHHHHhcCCCCCC
Confidence 5899999999999999999998863 689999999998888889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Q 048028 80 KTKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVNVLQRIAK 159 (592)
Q Consensus 80 ~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~la~ 159 (592)
+++++++|++++++|||++|+||++|+...||+||||||||+||.+|++||+||+|||||||||+.++.++++.|+++|+
T Consensus 139 ~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGErkRvsia~Ell~~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA~ 218 (613)
T KOG0061|consen 139 KEEKRERVEEVISELGLEKCADTLIGNPGIRGLSGGERKRVSIALELLTDPSILFLDEPTSGLDSFSALQVVQLLKRLAR 218 (613)
T ss_pred HHHHHHHHHHHHHHcCChhhccceecCCCCCccccchhhHHHHHHHHHcCCCEEEecCCCCCcchhhHHHHHHHHHHHHh
Confidence 99999999999999999999999999988899999999999999999999999999999999999999999999999999
Q ss_pred cCCEEEEEecCChhHHHhhhceEEEecCCeEeeecChhhHHHHHHHcCCCCCCCCChHHHHHHhhhhhhhccccCccchH
Q 048028 160 SGSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNETPSNLAQFFAEFGHPVPENENKIEFALDLMRELEESSSDGITSLV 239 (592)
Q Consensus 160 ~g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~~~~~~~f~~~g~~~p~~~n~~d~~~~~~~~~~~~~~~~~~~~~ 239 (592)
+|+|||+|+|||+++++++||++++|++|+++|+|+++++.+||++.|++||++.||+||++|+++.. +......
T Consensus 219 ~grtVi~tIHQPss~lf~lFD~l~lLs~G~~vy~G~~~~~~~ff~~~G~~~P~~~Npadf~l~l~s~~-----~~~~~~~ 293 (613)
T KOG0061|consen 219 SGRTVICTIHQPSSELFELFDKLLLLSEGEVVYSGSPRELLEFFSSLGFPCPELENPADFLLDLLSVD-----SGTRELE 293 (613)
T ss_pred CCCEEEEEEeCCcHHHHHHHhHhhhhcCCcEEEecCHHHHHHHHHhCCCCCCCcCChHHHHHHHHccC-----CCchhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999998753 1112222
Q ss_pred HHHHHHHHhHHHHhhccCCCCccccCCCCCCCCCCCCCC-cccCcHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHH
Q 048028 240 EFNESWQVTKRMEIKSRKTPTFHLKMPSSDGSNLTSSVQ-TFANPFWIETIVISKRLLTNSRRMPELFGIRFGSVLVTGF 318 (592)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~q~~~l~~R~~~~~~Rd~~~~~~r~~~~i~~~l 318 (592)
+..+.|+.....+. ......... .....-......+ ....+||.|++.|++|.+++.+|||.+...|+++++++|+
T Consensus 294 ~~~~~~~~~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~~~s~~~q~~~L~~R~~~~~~R~~~~~~~r~~~~~~~~~ 370 (613)
T KOG0061|consen 294 EAVRIAKLINKFSQ--TDNLKKTLE-ALEKSLSTSKKVEIGTSPSWWTQFKILLKRSLKNIRRDPSLLLLRLIQSLVTGL 370 (613)
T ss_pred hHHHHHHHhhhccc--cchhhhhHH-HHhhhcccccccccccCCcHHHHHHHHHHHHhHHHhhcHHHHHHHHHHHHHHHH
Confidence 23333332221110 000000000 0000000001111 1167999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCChhhHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhhhHHHHHhcCCCCCchhHHHHHHHHHHhHHHHHHH
Q 048028 319 ILATLFWKLQDSPKGALKRLGFFAFAMTTIFY-ICAREIPALLQERDIFIRETSYNTYRHSSYVFAHSLVSMPPITTLSI 397 (592)
Q Consensus 319 ~~G~~f~~~~~~~~~~~~~~g~~f~~~~~~~~-~~~~~i~~~~~er~v~~rE~~~~~Y~~~~y~la~~l~~lP~~~~~~~ 397 (592)
++|++||++++++.++++|.|++|+.+.++.+ .++.+++.|++||++|.||+.+|+|+.++||+|++++++|+.++.++
T Consensus 371 ~lg~~~~~~~~~~~~~~~~~g~~~~~~~~~~f~~~~~~i~~f~~e~~~f~rE~~~~~Y~~s~y~la~~l~~lP~~~i~~~ 450 (613)
T KOG0061|consen 371 LLGLLYLNLGNDAKGIQNRLGLFFFILSFMTFLSMFGAVPVFPQERPIFLRETSSGLYRLSSYYLAKTLAELPFLLVLSI 450 (613)
T ss_pred HHHHHhhCCCCchHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHhcCchhHHHHHHHHHHHHhHHHHHHHH
Confidence 99999999999999999999999998888855 55668999999999999999999999999999999999999999999
Q ss_pred HHHhhhhhccCCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHHHHhhccccCCCCCCcchhh
Q 048028 398 TFAVTTFWAVGLSGGFSGFLFFFITIFASFWAGSSFMAFIAGLVSHIIIGFTIVVAILGYFLLFCGFYIPRDEIPPYWIW 477 (592)
Q Consensus 398 ~f~~i~Y~~~gl~~~~~~f~~f~l~~~l~~~~~~~~~~~i~~~~~~~~~a~~~~~~~~~~~~lf~Gf~i~~~~ip~~~~W 477 (592)
+|.+|+|||+||+++..+|++|++++++..+++++++.+++++.|+..+|.++++++++++++|+||+++.++||+||+|
T Consensus 451 if~~i~Y~m~gl~~~~~~f~~~~l~~~~~~~~a~s~~~~i~~~~~~~~~a~~~~~~~~~~f~l~~G~fi~~~~ip~~~~w 530 (613)
T KOG0061|consen 451 IFSSIVYWMVGLNPGLSRFLYFLLIILLSSLVAESLGLFISAIVPNLSLATSLGPVLLLPFLLFGGFFINFDSIPKYFRW 530 (613)
T ss_pred HHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhheeehHHHHHHHHHHHhhhhcCcccccHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccCcchHHHHHHHHHHhCCCC-ccccCCccccCCCCCCCCCchhhHHHHhhhccccCCCccCcccccchHHHHhhcCC
Q 048028 478 FHYVSLVKYPFQGVLQNEFGDPS-KCFVSGVQVFDDTPFEGLPFDTKIKLLENMSNVLGNNITSSTCVTTGMKLLEQKGV 556 (592)
Q Consensus 478 ~~yiSp~~y~~~~l~~nef~~~~-~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~C~~~G~~~L~~~g~ 556 (592)
++|+|+++|++|++++|||.+.. .|... + ...|..+|++++++.++
T Consensus 531 ~~~~S~~ry~~e~l~~n~~~~~~~~~~~~-------~--------------------------~~~~~~~~~~~l~~~~~ 577 (613)
T KOG0061|consen 531 ISYLSYFRYAFEALLINQFSGGSSRCFLS-------G--------------------------NLCCESTGEDVLKQLGF 577 (613)
T ss_pred HHHHhHHHHHHHHHHHHHhhccccccccC-------c--------------------------CCcccccHHHHHHhcCC
Confidence 99999999999999999999733 67311 0 03467899999999999
Q ss_pred CCCCchHHHHHHHHHHHHHHHHHHHHHHhcccccCC
Q 048028 557 TDISKWKCFWITVAFGFLFRVLFYFTLLFGSKNKRR 592 (592)
Q Consensus 557 ~~~~~w~~~~il~~~~~~~~~l~~~~L~~~~~~~r~ 592 (592)
++.++|.|++++++++++||+++|++|+++.|++|+
T Consensus 578 ~~~~~~~~l~~l~~~~~~~~il~y~~L~~~~~~~~~ 613 (613)
T KOG0061|consen 578 EDSSFWLDLLVLLAFIVFFRVLGYLALRFRVKRKRR 613 (613)
T ss_pred cccccchhHHHHHHHHHHHHHHHHHHHHhhccccCC
Confidence 999999999999999999999999999999998875
No 2
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=100.00 E-value=2.9e-106 Score=910.86 Aligned_cols=559 Identities=34% Similarity=0.562 Sum_probs=487.6
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCC-CceeEEEECCEecCcccccceeEEEccCCCCCCCCCHHHHHHHHHHccCCCCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKE-SLQGAVTLNGEVLESKLLKIISAYVMQDDLLFPMLTVEETLMFAAEFRLPRSVT 79 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~-~~~G~I~i~g~~~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~ 79 (592)
++|+||||||||||||+|+|+.+++ ..+|+|.+||++++....++.+|||+|+|.+++++||+|||.|+++++.+...+
T Consensus 54 ~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~~~~lTV~e~l~f~~~~~~~~~~~ 133 (617)
T TIGR00955 54 LAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTLTVREHLMFQAHLRMPRRVT 133 (617)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCHHHHhhhceeeccccccCccCcHHHHHHHHHhcCCCCCCC
Confidence 5899999999999999999998753 357999999999876667788999999999999999999999999999887777
Q ss_pred HHHHHHHHHHHHHHcCCcccccccccCCC-CCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 048028 80 KTKKQERVEALINQLGLRSAAKTFIGDER-HRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVNVLQRIA 158 (592)
Q Consensus 80 ~~~~~~~v~~~l~~lgL~~~~~~~vg~~~-~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~la 158 (592)
+++++++++++++.+||.+++||++|++. .++|||||||||+||++|+.+|++++|||||+|||+.++.++++.|++++
T Consensus 134 ~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vlllDEPtsgLD~~~~~~l~~~L~~l~ 213 (617)
T TIGR00955 134 KKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLA 213 (617)
T ss_pred HHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEEEeeCCCcchhHHHHHHHHHHHHHHH
Confidence 78888899999999999999999999863 78999999999999999999999999999999999999999999999999
Q ss_pred HcCCEEEEEecCChhHHHhhhceEEEecCCeEeeecChhhHHHHHHHcCCCCCCCCChHHHHHHhhhhhhhccccCccch
Q 048028 159 KSGSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNETPSNLAQFFAEFGHPVPENENKIEFALDLMRELEESSSDGITSL 238 (592)
Q Consensus 159 ~~g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~~~~~~~f~~~g~~~p~~~n~~d~~~~~~~~~~~~~~~~~~~~ 238 (592)
++|+|||+++|||+.+++++||++++|++|+++|.|+++++.+||+++|++||++.||+||++++++.......+.....
T Consensus 214 ~~g~tvi~~~hq~~~~i~~~~D~i~ll~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~~~~~~~~~ 293 (617)
T TIGR00955 214 QKGKTIICTIHQPSSELFELFDKIILMAEGRVAYLGSPDQAVPFFSDLGHPCPENYNPADFYVQVLAVIPGSENESRERI 293 (617)
T ss_pred hCCCEEEEEeCCCCHHHHHHhceEEEeeCCeEEEECCHHHHHHHHHHcCCCCCCCCChHHHHHHHhhcCcccccchHHHH
Confidence 88999999999998789999999999999999999999999999999999999999999999999875433211111223
Q ss_pred HHHHHHHHHhHHHHhhccCCCCccccCCCCCCCCCCCCCCcccCcHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHH
Q 048028 239 VEFNESWQVTKRMEIKSRKTPTFHLKMPSSDGSNLTSSVQTFANPFWIETIVISKRLLTNSRRMPELFGIRFGSVLVTGF 318 (592)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~l~~R~~~~~~Rd~~~~~~r~~~~i~~~l 318 (592)
.++.+.|+++...+...........++..............+..+++.|+++|++|++++.+|||.++.+|+++++++|+
T Consensus 294 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~l~~R~~~~~~R~~~~~~~~~~~~i~~~l 373 (617)
T TIGR00955 294 EKICDSFAVSDIGRDMLVNTNLWSGKAGGLVKDSENMEGIGYNASWWTQFYALLKRSWLSVLRDPLLLKVRLIQTMMTAI 373 (617)
T ss_pred HHHHHHHhcchhhHHHHHHhhhhhccccccccccccccccccCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 34445555443322111000000000000000001112235678999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCChhhHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhhhHHHHHhcCCCCCchhHHHHHHHHHHhHHHHHHH
Q 048028 319 ILATLFWKLQDSPKGALKRLGFFAFAMTTIFYI-CAREIPALLQERDIFIRETSYNTYRHSSYVFAHSLVSMPPITTLSI 397 (592)
Q Consensus 319 ~~G~~f~~~~~~~~~~~~~~g~~f~~~~~~~~~-~~~~i~~~~~er~v~~rE~~~~~Y~~~~y~la~~l~~lP~~~~~~~ 397 (592)
++|++||+++++++++++|.|++|+.+.++.+. ++..++.|+.||++|.||+.+|+|++++|++|++++|+|+.++.++
T Consensus 374 i~G~~f~~~~~~~~~~~~~~g~lf~~~~~~~f~~~~~~~~~f~~er~v~~rE~~~~~Y~~~~y~la~~l~~lp~~~~~~~ 453 (617)
T TIGR00955 374 LIGLIYLGQGLTQKGVQNINGALFLFLTNMTFQNVFPVINVFTAELPVFLRETRSGLYRVSAYFLAKTIAELPLFIILPA 453 (617)
T ss_pred HHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999988877766 4577899999999999999999999999999999999999999999
Q ss_pred HHHhhhhhccCCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHHHHhhccccCCCCCCcchhh
Q 048028 398 TFAVTTFWAVGLSGGFSGFLFFFITIFASFWAGSSFMAFIAGLVSHIIIGFTIVVAILGYFLLFCGFYIPRDEIPPYWIW 477 (592)
Q Consensus 398 ~f~~i~Y~~~gl~~~~~~f~~f~l~~~l~~~~~~~~~~~i~~~~~~~~~a~~~~~~~~~~~~lf~Gf~i~~~~ip~~~~W 477 (592)
+|.+|+|||+||++++.+|++|++++++..+++.++++++++++|+..+|..+++++++++++|+||+++.++||+||+|
T Consensus 454 if~~i~Y~~~gl~~~~~~f~~f~l~~~l~~~~~~s~~~~i~~~~~~~~~a~~~~~~~~~~~~lf~G~~i~~~~ip~~~~W 533 (617)
T TIGR00955 454 LFTSITYWMIGLRSGATHFLTFLFLVTLVANVATSFGYLISCAFSSTSMALTVGPPFVIPFLLFGGFFINSDSIPVYFKW 533 (617)
T ss_pred HHHhhhheeccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhcccChhhccHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccCcchHHHHHHHHHHhCCCC--ccccCCccccCCCCCCCCCchhhHHHHhhhccccCCCccCcccccchHHHHhhcC
Q 048028 478 FHYVSLVKYPFQGVLQNEFGDPS--KCFVSGVQVFDDTPFEGLPFDTKIKLLENMSNVLGNNITSSTCVTTGMKLLEQKG 555 (592)
Q Consensus 478 ~~yiSp~~y~~~~l~~nef~~~~--~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~C~~~G~~~L~~~g 555 (592)
++|+||++|++|+++.|||++.. +|.. ++ .++.|..+|+++|+.||
T Consensus 534 ~~~isp~~ya~~al~~nef~~~~~~~c~~-------------------------------~~-~~~~c~~~g~~~l~~~g 581 (617)
T TIGR00955 534 LSYLSWFRYGNEGLLINQWSDVDNIECTS-------------------------------AN-TTGPCPSSGEVILETLS 581 (617)
T ss_pred HHHcCHHHHHHHHHHHHHhCCCccccccC-------------------------------cC-cCCCCCcChHHHHHhcC
Confidence 99999999999999999998866 4621 00 12468888999999999
Q ss_pred CCCCCchHHHHHHHHHHHHHHHHHHHHHHhcccccC
Q 048028 556 VTDISKWKCFWITVAFGFLFRVLFYFTLLFGSKNKR 591 (592)
Q Consensus 556 ~~~~~~w~~~~il~~~~~~~~~l~~~~L~~~~~~~r 591 (592)
++.++.|++++++++++++|++++|++||++.|++|
T Consensus 582 ~~~~~~~~~~~il~~~~~~~~~l~~~~L~~~~~~~~ 617 (617)
T TIGR00955 582 FRNADLYLDLIGLVILIFFFRLLAYFALRIRIRRKR 617 (617)
T ss_pred CCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 999999999999999999999999999999877766
No 3
>PLN03211 ABC transporter G-25; Provisional
Probab=100.00 E-value=1.2e-102 Score=882.10 Aligned_cols=547 Identities=27% Similarity=0.448 Sum_probs=457.2
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCcccccceeEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCH
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLESKLLKIISAYVMQDDLLFPMLTVEETLMFAAEFRLPRSVTK 80 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~ 80 (592)
+||+||||||||||||+|+|+.++...+|+|.+||+++... .++.++||+|++.+++.+||+||+.|++.++.+...++
T Consensus 97 ~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG~~~~~~-~~~~i~yv~Q~~~l~~~lTV~E~l~~~a~~~~~~~~~~ 175 (659)
T PLN03211 97 LAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTKQ-ILKRTGFVTQDDILYPHLTVRETLVFCSLLRLPKSLTK 175 (659)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCCCceeEEEEECCEECchh-hccceEEECcccccCCcCCHHHHHHHHHHhCCCCCCCH
Confidence 58999999999999999999987654689999999987643 34568999999999999999999999988876655666
Q ss_pred HHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc
Q 048028 81 TKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVNVLQRIAKS 160 (592)
Q Consensus 81 ~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~la~~ 160 (592)
++++++++++++.+||++++||++|+...++|||||||||+||++|+.+|+||+|||||+|||+.++.++++.|++++++
T Consensus 176 ~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLDEPtsgLD~~~~~~l~~~L~~l~~~ 255 (659)
T PLN03211 176 QEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQK 255 (659)
T ss_pred HHHHHHHHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHhC
Confidence 67778899999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CCEEEEEecCChhHHHhhhceEEEecCCeEeeecChhhHHHHHHHcCCCCCCCCChHHHHHHhhhhhhhcc----ccCcc
Q 048028 161 GSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNETPSNLAQFFAEFGHPVPENENKIEFALDLMRELEESS----SDGIT 236 (592)
Q Consensus 161 g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~~~~~~~f~~~g~~~p~~~n~~d~~~~~~~~~~~~~----~~~~~ 236 (592)
|+|||+++|||+.+++++||++++|++|+++|.|+++++.+||+++|++||++.|||||++++++...+.. .+...
T Consensus 256 g~TvI~~sH~~~~~i~~~~D~iilL~~G~iv~~G~~~~~~~~f~~~G~~~P~~~NpADf~ldv~~~~~~~~~~~~~~~~~ 335 (659)
T PLN03211 256 GKTIVTSMHQPSSRVYQMFDSVLVLSEGRCLFFGKGSDAMAYFESVGFSPSFPMNPADFLLDLANGVCQTDGVSEREKPN 335 (659)
T ss_pred CCEEEEEecCCCHHHHHhhceEEEecCCcEEEECCHHHHHHHHHHCCCCCCCCCCHHHHHHHHcCccccCCCccccccch
Confidence 99999999999877899999999999999999999999999999999999999999999999987432110 01111
Q ss_pred chHHHHHHHHHhHHH---HhhccCCCCccccCCCC-CCCCC-CCCCCcccCcHHHHHHHHHHHHHHHhhcChHHHHHHHH
Q 048028 237 SLVEFNESWQVTKRM---EIKSRKTPTFHLKMPSS-DGSNL-TSSVQTFANPFWIETIVISKRLLTNSRRMPELFGIRFG 311 (592)
Q Consensus 237 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~q~~~l~~R~~~~~~Rd~~~~~~r~~ 311 (592)
...+..+.|+..... +............+... ...+. ......+.++||+|+.+|++|++++ +||+.+..+|++
T Consensus 336 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~L~~R~~~~-~r~~~~~~~r~~ 414 (659)
T PLN03211 336 VKQSLVASYNTLLAPKVKAAIEMSHFPQANARFVGSASTKEHRSSDRISISTWFNQFSILLQRSLKE-RKHESFNTLRVF 414 (659)
T ss_pred HHHHHHHHHHhhccHHHHHHHhhhhhhcchhhhhhcccccccccCCCccCCCHHHHHHHHHHHHHHH-HhCcHHHHHHHH
Confidence 112223344321100 00000000000000000 00000 0111234578999999999999998 899999999999
Q ss_pred HHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhhhHHHHHhcCCCCCchhHHHHHHHHHHh
Q 048028 312 SVLVTGFILATLFWKLQDSPKGALKRLGFFAFAMTTIFY-ICAREIPALLQERDIFIRETSYNTYRHSSYVFAHSLVSMP 390 (592)
Q Consensus 312 ~~i~~~l~~G~~f~~~~~~~~~~~~~~g~~f~~~~~~~~-~~~~~i~~~~~er~v~~rE~~~~~Y~~~~y~la~~l~~lP 390 (592)
+++++|+++|++||+++ +.++++|.|++||++.+..+ .++.+++.|+.||++|+||+.+|+|++++|++|++++|+|
T Consensus 415 ~~i~~~ll~G~lf~~~~--~~~~~~r~g~lff~~~~~~~~~~~~~~~~f~~er~v~~rE~~~~~Y~~~~Y~la~~l~elP 492 (659)
T PLN03211 415 QVIAAALLAGLMWWHSD--FRDVQDRLGLLFFISIFWGVFPSFNSVFVFPQERAIFVKERASGMYTLSSYFMARIVGDLP 492 (659)
T ss_pred HHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999985 67899999999998777554 5678999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhhccCCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHHHHhhccccCCCC
Q 048028 391 PITTLSITFAVTTFWAVGLSGGFSGFLFFFITIFASFWAGSSFMAFIAGLVSHIIIGFTIVVAILGYFLLFCGFYIPRDE 470 (592)
Q Consensus 391 ~~~~~~~~f~~i~Y~~~gl~~~~~~f~~f~l~~~l~~~~~~~~~~~i~~~~~~~~~a~~~~~~~~~~~~lf~Gf~i~~~~ 470 (592)
+.++.+++|.+|+|||+||++++.+|++|++++++..++++++|+++++++|++.+|+++++++++++++|+||+++ +
T Consensus 493 ~~~~~~~if~~i~Y~m~Gl~~~~~~F~~f~li~~l~~~~~~s~g~~i~a~~~~~~~a~~~~~~~~~~~~lfsGf~i~--~ 570 (659)
T PLN03211 493 MELILPTIFLTVTYWMAGLKPELGAFLLTLLVLLGYVLVSQGLGLALGAAIMDAKKASTIVTVTMLAFVLTGGFYVH--K 570 (659)
T ss_pred HHHHHHHHHHhheeEcCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhhhHh--h
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999997 7
Q ss_pred CCcchhhhhccCcchHHHHHHHHHHhCCCC------ccccCCccccCCCCCCCCCchhhHHHHhhhccccCCCccCcccc
Q 048028 471 IPPYWIWFHYVSLVKYPFQGVLQNEFGDPS------KCFVSGVQVFDDTPFEGLPFDTKIKLLENMSNVLGNNITSSTCV 544 (592)
Q Consensus 471 ip~~~~W~~yiSp~~y~~~~l~~nef~~~~------~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~C~ 544 (592)
||+||+|++|+||++|+||+++.|||++.. .|... . + .....|.
T Consensus 571 ip~~~~W~~ylS~~~y~~eal~~nef~~~~~~~~~~~C~~~------------~-----------------~-~~~~~c~ 620 (659)
T PLN03211 571 LPSCMAWIKYISTTFYSYRLLINVQYGEGKRISSLLGCSLP------------H-----------------G-SDRASCK 620 (659)
T ss_pred chHHHHHHHHhCHHHHHHHHHHHHhcCCccccccccCCCCc------------c-----------------c-CCCCCCc
Confidence 999999999999999999999999998643 24110 0 0 0113465
Q ss_pred cchHHHHhhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhccc
Q 048028 545 TTGMKLLEQKGVTDISKWKCFWITVAFGFLFRVLFYFTLLFGSK 588 (592)
Q Consensus 545 ~~G~~~L~~~g~~~~~~w~~~~il~~~~~~~~~l~~~~L~~~~~ 588 (592)
..++.+++ +.+.|.|+++|++++++||+++|++|++.++
T Consensus 621 ~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~l~~~~L~~~~~ 659 (659)
T PLN03211 621 FVEEDVAG-----QISPATSVSVLIFMFVGYRLLAYLALRRIKH 659 (659)
T ss_pred cchhhhhc-----ccchHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 55554443 4579999999999999999999999987653
No 4
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=100.00 E-value=3.2e-102 Score=938.96 Aligned_cols=575 Identities=22% Similarity=0.366 Sum_probs=492.3
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCC--CCceeEEEECCEecCc--ccccceeEEEccCCCCCCCCCHHHHHHHHHHccCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRIEK--ESLQGAVTLNGEVLES--KLLKIISAYVMQDDLLFPMLTVEETLMFAAEFRLPR 76 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~--~~~~G~I~i~g~~~~~--~~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~~~ 76 (592)
++|+||||||||||||+|+|+.++ .+.+|+|.+||++++. ...++.++||+|+|.+++.+||+|||.|+++++.|.
T Consensus 90 ~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~ 169 (1394)
T TIGR00956 90 TVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFPHLTVGETLDFAARCKTPQ 169 (1394)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccCCCCCHHHHHHHHHHhCCCC
Confidence 589999999999999999999742 2368999999998753 234566899999999999999999999999887653
Q ss_pred ----CCCHHHHHHH-HHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHH
Q 048028 77 ----SVTKTKKQER-VEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVV 151 (592)
Q Consensus 77 ----~~~~~~~~~~-v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~ 151 (592)
..+++++.++ ++++++.+||++++|++||++.+++|||||||||+||++|+.+|++++|||||+|||+.++.+++
T Consensus 170 ~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~vlllDEPTsgLD~~~~~~i~ 249 (1394)
T TIGR00956 170 NRPDGVSREEYAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQCWDNATRGLDSATALEFI 249 (1394)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHH
Confidence 2344444444 57799999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHc-CCEEEEEecCChhHHHhhhceEEEecCCeEeeecChhhHHHHHHHcCCCCCCCCChHHHHHHhhhhhhhc
Q 048028 152 NVLQRIAKS-GSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNETPSNLAQFFAEFGHPVPENENKIEFALDLMRELEES 230 (592)
Q Consensus 152 ~~l~~la~~-g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~~~~~~~f~~~g~~~p~~~n~~d~~~~~~~~~~~~ 230 (592)
+.|++++++ |+|||+++|||+.+++++||++++|++|+++|+|+++++.+||+++|++||++.||+||+++++++.++.
T Consensus 250 ~~L~~la~~~g~tvii~~Hq~~~~i~~l~D~v~~L~~G~iv~~G~~~~~~~yF~~lG~~~p~~~n~aDfl~~~~~~~~~~ 329 (1394)
T TIGR00956 250 RALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYEGYQIYFGPADKAKQYFEKMGFKCPDRQTTADFLTSLTSPAERQ 329 (1394)
T ss_pred HHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEeCCeEEEECCHHHHHHHHHHcCCCCCCCCChHHHHHhccChhhhh
Confidence 999999975 8999999999987899999999999999999999999999999999999999999999999998765432
Q ss_pred cc-----cCccchHHHHHHHHHhHHHHhhccCC----CCc---cc----cC-CCCCCCCCCCCCCcccCcHHHHHHHHHH
Q 048028 231 SS-----DGITSLVEFNESWQVTKRMEIKSRKT----PTF---HL----KM-PSSDGSNLTSSVQTFANPFWIETIVISK 293 (592)
Q Consensus 231 ~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~---~~----~~-~~~~~~~~~~~~~~~~~~~~~q~~~l~~ 293 (592)
.. ....+..++.+.|+++..++....+. ... .. .+ .....++.......+..|+|+|+++|++
T Consensus 330 ~~~~~e~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~l~~ 409 (1394)
T TIGR00956 330 IKPGYEKKVPRTPQEFETYWRNSPEYAQLMKEIDEYLDRCSESDTKEAYRESHVAKQSKRTRPSSPYTVSFSMQVKYCLA 409 (1394)
T ss_pred ccccccccCCCCHHHHHHHHHcCHHHHHHHHHHHHHhhhccchhhHHHHHHHHHhhhcccccCCCCCcCCHHHHHHHHHH
Confidence 11 12345667888998876543211000 000 00 00 0000011112233577899999999999
Q ss_pred HHHHHhhcChHHHHHHHHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhcCC
Q 048028 294 RLLTNSRRMPELFGIRFGSVLVTGFILATLFWKLQDSPKGALKRLGFFAFAMTTIFYICAREIPALLQERDIFIRETSYN 373 (592)
Q Consensus 294 R~~~~~~Rd~~~~~~r~~~~i~~~l~~G~~f~~~~~~~~~~~~~~g~~f~~~~~~~~~~~~~i~~~~~er~v~~rE~~~~ 373 (592)
|++++.+|||.++.+|+++++++|+++|++||+++++++++++|.|++|+++.+.++.++..++.++.||+||+||+.++
T Consensus 410 R~~~~~~Rd~~~~~~r~~~~ii~~li~G~~F~~~~~~~~~~~~r~g~lf~~~~~~~~~~~~~i~~~~~eR~i~~re~~~~ 489 (1394)
T TIGR00956 410 RNFLRMKGNPSFTLFMVFGNIIMALILSSVFYNLPKNTSDFYSRGGALFFAILFNAFSSLLEIASMYEARPIVEKHRKYA 489 (1394)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcceeeecccc
Confidence 99999999999999999999999999999999999999999999999999999988888888999999999999999999
Q ss_pred CCCchhHHHHHHHHHHhHHHHHHHHHHhhhhhccCCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHHH
Q 048028 374 TYRHSSYVFAHSLVSMPPITTLSITFAVTTFWAVGLSGGFSGFLFFFITIFASFWAGSSFMAFIAGLVSHIIIGFTIVVA 453 (592)
Q Consensus 374 ~Y~~~~y~la~~l~~lP~~~~~~~~f~~i~Y~~~gl~~~~~~f~~f~l~~~l~~~~~~~~~~~i~~~~~~~~~a~~~~~~ 453 (592)
+|++++|++|++++|+|+.++.+++|++|+|||+||++++++||+|++++++..+++.++++++++++|++.+|+.++++
T Consensus 490 ~Y~~~ay~la~~l~~iP~~~~~~~if~~i~Yfm~gl~~~~~~Ff~f~l~~~l~~~~~~~~~~~i~a~~~~~~~A~~~~~~ 569 (1394)
T TIGR00956 490 LYHPSADAIASIISEIPFKIIESVVFNIILYFMVNFRRTAGRFFFYLLILFICTLAMSHLFRSIGAVTKTLSEAMTPAAI 569 (1394)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHhhhEEcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhccccCCCCCCcchhhhhccCcchHHHHHHHHHHhCCCC-ccccCCccccCCCCCCCCCch-hhHHHHhhhc
Q 048028 454 ILGYFLLFCGFYIPRDEIPPYWIWFHYVSLVKYPFQGVLQNEFGDPS-KCFVSGVQVFDDTPFEGLPFD-TKIKLLENMS 531 (592)
Q Consensus 454 ~~~~~~lf~Gf~i~~~~ip~~~~W~~yiSp~~y~~~~l~~nef~~~~-~C~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 531 (592)
+++++++|+||++|.++||+||+|++|+||++|+|||++.|||++.+ .|.. ..|.+| +++.. ..++.|...|
T Consensus 570 ~~~~~~lf~Gf~i~~~~mp~~~~W~~yisp~~yafeal~~nef~~~~~~C~~----~~p~g~--~y~~~~~~~~~C~~~g 643 (1394)
T TIGR00956 570 LLLALSIYTGFAIPRPSMLGWSKWIYYVNPLAYAFESLMVNEFHGRRFECSQ----YVPSGG--GYDNLGVTNKVCTVVG 643 (1394)
T ss_pred HHHHHHHHcccccChhhccHHHHHHHHcCHHHHHHHHHHHhhhcCCcccccc----cccCCC--CCCCCCccCccccCCC
Confidence 99999999999999999999999999999999999999999999988 8942 112222 12211 0123465554
Q ss_pred cccCCCccCcccccchHHHHh-hcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhcc
Q 048028 532 NVLGNNITSSTCVTTGMKLLE-QKGVTDISKWKCFWITVAFGFLFRVLFYFTLLFGS 587 (592)
Q Consensus 532 ~~~g~~~~~~~C~~~G~~~L~-~~g~~~~~~w~~~~il~~~~~~~~~l~~~~L~~~~ 587 (592)
+.. +.|.++|+++|+ .||++++++|+|++|+++|+++|++++++++.+.+
T Consensus 644 ~~~------g~~~~~G~~~L~~~~~~~~~~~w~n~gil~~~~v~f~~~~~l~l~~~~ 694 (1394)
T TIGR00956 644 AEP------GQDYVDGDDYLKLSFQYYNSHKWRNFGIIIGFTVFFFFVYILLTEFNK 694 (1394)
T ss_pred CcC------CcccccHHHHHHhcCCcccchhhHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 433 345689999998 59999999999999999999999999999999876
No 5
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=100.00 E-value=1.7e-100 Score=923.89 Aligned_cols=579 Identities=26% Similarity=0.447 Sum_probs=498.5
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCC-CceeEEEECCEecCcccccceeEEEccCCCCCCCCCHHHHHHHHHHccCCCCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKE-SLQGAVTLNGEVLESKLLKIISAYVMQDDLLFPMLTVEETLMFAAEFRLPRSVT 79 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~-~~~G~I~i~g~~~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~ 79 (592)
+|||||||||||||||+|+|+.+++ ..+|+|.+||++++. ..++.+|||+|+|.+++.+||+|||.|++.++.|...+
T Consensus 792 ~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~~-~~~~~i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~ 870 (1394)
T TIGR00956 792 TALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDS-SFQRSIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVS 870 (1394)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCh-hhhcceeeecccccCCCCCCHHHHHHHHHHhCCCCCCC
Confidence 5899999999999999999998643 356999999999854 46778999999999999999999999999988776667
Q ss_pred HHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCc-EEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 048028 80 KTKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPI-LLFLDEPTSGLDSTSAFMVVNVLQRIA 158 (592)
Q Consensus 80 ~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~-lllLDEPtsgLD~~~~~~i~~~l~~la 158 (592)
+++++++++++++.+||.+++|+.+|+. ..+|||||||||+||++|+.+|+ ||||||||+|||+.++..+++.|++++
T Consensus 871 ~~~~~~~v~~~l~~l~L~~~~d~~v~~~-~~~LSgGqrqRl~Ia~aL~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la 949 (1394)
T TIGR00956 871 KSEKMEYVEEVIKLLEMESYADAVVGVP-GEGLNVEQRKRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLA 949 (1394)
T ss_pred HHHHHHHHHHHHHHcCChhhCCCeeCCC-CCCCCHHHhhHHHHHHHHHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHH
Confidence 7777889999999999999999999854 34899999999999999999997 999999999999999999999999999
Q ss_pred HcCCEEEEEecCChhHHHhhhceEEEecCC-eEeeecCh----hhHHHHHHHcCC-CCCCCCChHHHHHHhhhhhhhccc
Q 048028 159 KSGSIVIMSIHQPSYRILSLLDRLIILSHG-QSVYNETP----SNLAQFFAEFGH-PVPENENKIEFALDLMRELEESSS 232 (592)
Q Consensus 159 ~~g~tvi~~~H~~~~~i~~~~D~v~ll~~G-~~v~~g~~----~~~~~~f~~~g~-~~p~~~n~~d~~~~~~~~~~~~~~ 232 (592)
++|+|||+++|||+..+++.||++++|++| +++|+|++ +++.+||++.|+ +||++.|||||++|+++.....
T Consensus 950 ~~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv~~G~~~~~~~~~~~yf~~~G~~~~p~~~NpAd~~ldvi~~~~~~-- 1027 (1394)
T TIGR00956 950 DHGQAILCTIHQPSAILFEEFDRLLLLQKGGQTVYFGDLGENSHTIINYFEKHGAPKCPEDANPAEWMLEVIGAAPGA-- 1027 (1394)
T ss_pred HcCCEEEEEecCCCHHHHHhcCEEEEEcCCCEEEEECCcccccchHHHHHHhcCCCCCCCCCCHHHHHHHHhhccccc--
Confidence 889999999999997678899999999997 99999997 578999999995 9999999999999998643221
Q ss_pred cCccchHHHHHHHHHhHHHHhhccCCCCccccCCCCCCCCCCCCCCcccCcHHHHHHHHHHHHHHHhhcChHHHHHHHHH
Q 048028 233 DGITSLVEFNESWQVTKRMEIKSRKTPTFHLKMPSSDGSNLTSSVQTFANPFWIETIVISKRLLTNSRRMPELFGIRFGS 312 (592)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~l~~R~~~~~~Rd~~~~~~r~~~ 312 (592)
....++.+.|+.+...+..........................+++.|+|+|+++|++|++++.||||.++.+|+++
T Consensus 1028 ---~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~q~~~l~~R~~~~~~R~~~~~~~r~~~ 1104 (1394)
T TIGR00956 1028 ---HANQDYHEVWRNSSEYQAVKNELDRLEAELSKAEDDNDPDALSKYAASLWYQFKLVLWRTFQQYWRTPDYLYSKFFL 1104 (1394)
T ss_pred ---chhccHHHHHhcCHHHHHHHHHHHHhhcccccCccccccccccccCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 11235677777665433211000000000000000001112246788999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH-HHHhcCCCCCchhHHHHHHHHHHhH
Q 048028 313 VLVTGFILATLFWKLQDSPKGALKRLGFFAFAMTTIFYICAREIPALLQERDIF-IRETSYNTYRHSSYVFAHSLVSMPP 391 (592)
Q Consensus 313 ~i~~~l~~G~~f~~~~~~~~~~~~~~g~~f~~~~~~~~~~~~~i~~~~~er~v~-~rE~~~~~Y~~~~y~la~~l~~lP~ 391 (592)
++++|+++|++||++++++.++++|.|++|+.+.+..+.....+|.|+.||.+| +||+.+|+|++++|++|++++|+|+
T Consensus 1105 ~i~~~l~~G~~f~~~~~~~~~i~~~~g~~f~~~~~~~~~~~~~~~~f~~~r~~~~~RE~~s~~Y~~~~y~~a~~l~elP~ 1184 (1394)
T TIGR00956 1105 TIFAALFIGFTFFKVGTSLQGLQNQMFAVFMATVLFNPLIQQYLPPFVAQRDLYEVRERPSRTFSWLAFIAAQITVEIPY 1184 (1394)
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999888777666678899999999886 8999999999999999999999999
Q ss_pred HHHHHHHHHhhhhhccCCcCchhH-------HHHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHHHHhhcc
Q 048028 392 ITTLSITFAVTTFWAVGLSGGFSG-------FLFFFITIFASFWAGSSFMAFIAGLVSHIIIGFTIVVAILGYFLLFCGF 464 (592)
Q Consensus 392 ~~~~~~~f~~i~Y~~~gl~~~~~~-------f~~f~l~~~l~~~~~~~~~~~i~~~~~~~~~a~~~~~~~~~~~~lf~Gf 464 (592)
.++.+++|.+|+|||+||++++.. |++|++++++..+++.++|+++++++|+..+|..+++++++++++|+||
T Consensus 1185 ~~~~~~if~~i~Y~~~Gl~~~~~~~~~~~~~f~~~~~~~~~~~~~~~s~g~~~~~~~~~~~~a~~~~~~~~~~~~lf~G~ 1264 (1394)
T TIGR00956 1185 NLVAGTIFFFIWYYPVGFYWNASKTGQVHERGVLFWLLSTMFFLYFSTLGQMVISFNPNADNAAVLASLLFTMCLSFCGV 1264 (1394)
T ss_pred HHHHHHHHHhheeecccccCcccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHhccc
Confidence 999999999999999999988766 9999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCcchhhhhccCcchHHHHHHHHHHhCCCC-ccccCCccccCCCCCCCCCchhhHHHHhhhccccCCCccCccc
Q 048028 465 YIPRDEIPPYWIWFHYVSLVKYPFQGVLQNEFGDPS-KCFVSGVQVFDDTPFEGLPFDTKIKLLENMSNVLGNNITSSTC 543 (592)
Q Consensus 465 ~i~~~~ip~~~~W~~yiSp~~y~~~~l~~nef~~~~-~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~C 543 (592)
+++.++||+||+|++|+||++|++++++.|||++.+ +|...+...+++ |.+..|+++...+....+++.-++.+++.|
T Consensus 1265 ~~~~~~ip~~~~w~~~~sp~~y~~~~l~~~~~~~~~~~C~~~e~~~f~p-p~~~tC~~y~~~~~~~~~G~l~~~~a~~~C 1343 (1394)
T TIGR00956 1265 LAPPSRMPGFWIFMYRCSPFTYLVQALLSTGLADVPVTCKVKELLTFNP-PSGQTCGEYMKPYLENAGGYLLNPNATDSC 1343 (1394)
T ss_pred cCChhHCcHHHhHHHhcCHHHHHHHHHHHHHcCCCeeecCccccceecC-CCCCCHHHHHHHHHhhCCcEeeCCCCCCCC
Confidence 999999999999999999999999999999999998 898877777754 334566666667777777877665555455
Q ss_pred ---c-cchHHHHhhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhccc
Q 048028 544 ---V-TTGMKLLEQKGVTDISKWKCFWITVAFGFLFRVLFYFTLLFGSK 588 (592)
Q Consensus 544 ---~-~~G~~~L~~~g~~~~~~w~~~~il~~~~~~~~~l~~~~L~~~~~ 588 (592)
+ .+|+++|+.+|++.+++|+|++|+++|++++ +++++.|+++.|
T Consensus 1344 ~yC~~~~~~~~l~~~~~~~~~~w~~~~i~~~~~~~~-~~~~~~l~~~~r 1391 (1394)
T TIGR00956 1344 SFCQYSYTNDFLEPISSKYSGRWRNFGIFIAFIFFN-IIATVFFYWLAR 1391 (1394)
T ss_pred CcCCCCCHHHHHHHcCCcccccccchhhhhHHHHHH-HHHHHhhheEEE
Confidence 3 7999999999999999999999999999998 888899988754
No 6
>PLN03140 ABC transporter G family member; Provisional
Probab=100.00 E-value=6.4e-100 Score=915.95 Aligned_cols=549 Identities=25% Similarity=0.457 Sum_probs=479.5
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCcccccceeEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCH
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLESKLLKIISAYVMQDDLLFPMLTVEETLMFAAEFRLPRSVTK 80 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~ 80 (592)
+|||||||||||||||+|+|+.+++..+|+|.+||++.+....++.+|||+|+|.+++.+||+|||.|++.++.|...++
T Consensus 909 ~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~~~~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~~~~ 988 (1470)
T PLN03140 909 TALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSK 988 (1470)
T ss_pred EEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccCChHHhhhheEEEccccccCCCCcHHHHHHHHHHhCCCCCCCH
Confidence 58999999999999999999976556789999999987655566778999999999999999999999998887766667
Q ss_pred HHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc
Q 048028 81 TKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVNVLQRIAKS 160 (592)
Q Consensus 81 ~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~la~~ 160 (592)
++++++++++++.+||++++|+++|+..+++|||||||||+||++|+.+|++|||||||+|||+.++..+++.|++++++
T Consensus 989 ~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LSgGerkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~~ 1068 (1470)
T PLN03140 989 EEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1068 (1470)
T ss_pred HHHHHHHHHHHHHCCChhHhCCccCCCCCCCcCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC
Confidence 77778899999999999999999998878899999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEEecCChhHHHhhhceEEEecC-CeEeeecCh----hhHHHHHHHc-CCC-CCCCCChHHHHHHhhhhhhhcccc
Q 048028 161 GSIVIMSIHQPSYRILSLLDRLIILSH-GQSVYNETP----SNLAQFFAEF-GHP-VPENENKIEFALDLMRELEESSSD 233 (592)
Q Consensus 161 g~tvi~~~H~~~~~i~~~~D~v~ll~~-G~~v~~g~~----~~~~~~f~~~-g~~-~p~~~n~~d~~~~~~~~~~~~~~~ 233 (592)
|+|||+++|||+.++++.||++++|++ |+++|+|++ +++.+||+++ |.+ ||++.|||||++++++...+
T Consensus 1069 g~tVI~t~Hq~~~~i~~~~D~vllL~~gG~~v~~G~~~~~~~~~~~yF~~~~g~~~~p~~~NPAd~~l~v~~~~~~---- 1144 (1470)
T PLN03140 1069 GRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYSGPLGRNSHKIIEYFEAIPGVPKIKEKYNPATWMLEVSSLAAE---- 1144 (1470)
T ss_pred CCEEEEEeCCCCHHHHHhCCEEEEEcCCCEEEEECCcccccccHHHHHHhcCCCCCCCCCCCchhhhhhhhccccc----
Confidence 999999999999778999999999996 899999996 5899999997 664 99999999999999764322
Q ss_pred CccchHHHHHHHHHhHHHHhhccCCCCccccCCCCCCCCCCCCCCcccCcHHHHHHHHHHHHHHHhhcChHHHHHHHHHH
Q 048028 234 GITSLVEFNESWQVTKRMEIKSRKTPTFHLKMPSSDGSNLTSSVQTFANPFWIETIVISKRLLTNSRRMPELFGIRFGSV 313 (592)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~l~~R~~~~~~Rd~~~~~~r~~~~ 313 (592)
.....++.+.|+.+..++....... .+..... ..........++.|+|+|+++|++|+++++||||.++.+|+++.
T Consensus 1145 -~~~~~d~~~~~~~s~~~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~~s~~~Q~~~l~~R~~~~~~R~p~~~~~r~~~~ 1220 (1470)
T PLN03140 1145 -VKLGIDFAEHYKSSSLYQRNKALVK--ELSTPPP-GASDLYFATQYSQSTWGQFKSCLWKQWWTYWRSPDYNLVRFFFT 1220 (1470)
T ss_pred -ccccchHHHHHhccHHHHHHHHHHH--HhccCCC-CccccccCccccCCHHHHHHHHHHHHHHHHHCCHhHHHHHHHHH
Confidence 1122467888887765542211000 0111000 01111112467889999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCh---hhHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhhhHHHHHhcCCCCCchhHHHHHHHHHH
Q 048028 314 LVTGFILATLFWKLQDSP---KGALKRLGFFAFAMTTIFYI-CAREIPALLQERDIFIRETSYNTYRHSSYVFAHSLVSM 389 (592)
Q Consensus 314 i~~~l~~G~~f~~~~~~~---~~~~~~~g~~f~~~~~~~~~-~~~~i~~~~~er~v~~rE~~~~~Y~~~~y~la~~l~~l 389 (592)
+++|+++|++||++++++ .+++++.|++|+.+.+..+. +.+.+|.|..||++|+||+++|+|++++|++|++++|+
T Consensus 1221 i~~al~~G~~f~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~p~~~~eR~vf~REr~~~~Y~~~~y~la~~l~ei 1300 (1470)
T PLN03140 1221 LAAALMVGTIFWKVGTKRSNANDLTMVIGAMYAAVLFVGINNCSTVQPMVAVERTVFYRERAAGMYSALPYAIAQVVCEI 1300 (1470)
T ss_pred HHHHHHHHHHhhCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHH
Confidence 999999999999999765 57888999999888877664 45678999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhhhhhccCCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHHHHhhccccCCC
Q 048028 390 PPITTLSITFAVTTFWAVGLSGGFSGFLFFFITIFASFWAGSSFMAFIAGLVSHIIIGFTIVVAILGYFLLFCGFYIPRD 469 (592)
Q Consensus 390 P~~~~~~~~f~~i~Y~~~gl~~~~~~f~~f~l~~~l~~~~~~~~~~~i~~~~~~~~~a~~~~~~~~~~~~lf~Gf~i~~~ 469 (592)
|+.++.+++|.+|+|||+||++++.+||+|++++++..+++.++|+++++++|+.++|..+++++++++++|+||++|.+
T Consensus 1301 P~~~~~~~if~~i~Y~m~Gl~~~~~~f~~~~~~~~l~~~~~~~~g~~~~a~~p~~~~A~~~~~~~~~~~~lf~Gf~i~~~ 1380 (1470)
T PLN03140 1301 PYVLIQTTYYTLIVYAMVAFEWTAAKFFWFYFISFFSFLYFTYYGMMTVSLTPNQQVAAIFAAAFYGLFNLFSGFFIPRP 1380 (1470)
T ss_pred HHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHeeeccChH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcchhhhhccCcchHHHHHHHHHHhCCCC-ccccCCccccCCCCCCCCCchhhHHHHhhhccccCCCccCcccccchH
Q 048028 470 EIPPYWIWFHYVSLVKYPFQGVLQNEFGDPS-KCFVSGVQVFDDTPFEGLPFDTKIKLLENMSNVLGNNITSSTCVTTGM 548 (592)
Q Consensus 470 ~ip~~~~W~~yiSp~~y~~~~l~~nef~~~~-~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~C~~~G~ 548 (592)
+||+||+|++|+||++|++++++.|||+|.+ .|... ..+ + ..+++
T Consensus 1381 ~iP~~~~W~~~isp~~y~~~~l~~~~f~~~~~~~~~~------~~~----~------------------------~~~~~ 1426 (1470)
T PLN03140 1381 KIPKWWVWYYWICPVAWTVYGLIVSQYGDVEDTIKVP------GGA----P------------------------DPTIK 1426 (1470)
T ss_pred HCchHHHHHHHcCHHHHHHhhhHHHHhCCCCCcccCC------CCC----C------------------------CCcHH
Confidence 9999999999999999999999999999877 55210 000 0 02466
Q ss_pred HH-HhhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhcccccC
Q 048028 549 KL-LEQKGVTDISKWKCFWITVAFGFLFRVLFYFTLLFGSKNKR 591 (592)
Q Consensus 549 ~~-L~~~g~~~~~~w~~~~il~~~~~~~~~l~~~~L~~~~~~~r 591 (592)
++ ++.|||+++++|++++|+++|+++|++++++++++.+++||
T Consensus 1427 ~~~~~~~g~~~~~~~~~~~il~~~~~~f~~~~~~~~~~~~~q~r 1470 (1470)
T PLN03140 1427 WYIQDHYGYDPDFMGPVAAVLVGFTVFFAFIFAFCIRTLNFQTR 1470 (1470)
T ss_pred HHHHHhcCcCcccccchhhhHHHHHHHHHHHHHHHHHHhhcccC
Confidence 66 57899999999999999999999999999999999999998
No 7
>PLN03140 ABC transporter G family member; Provisional
Probab=100.00 E-value=5.9e-99 Score=907.64 Aligned_cols=550 Identities=25% Similarity=0.403 Sum_probs=473.4
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCC-CceeEEEECCEecCcccccceeEEEccCCCCCCCCCHHHHHHHHHHccCCCC--
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKE-SLQGAVTLNGEVLESKLLKIISAYVMQDDLLFPMLTVEETLMFAAEFRLPRS-- 77 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~-~~~G~I~i~g~~~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~~~~-- 77 (592)
++|+||||||||||||+|+|++++. ..+|+|.+||+++++...++.++||+|+|.+++++||+|||.|+++++.+..
T Consensus 194 ~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~EtL~f~a~~~~~~~~~ 273 (1470)
T PLN03140 194 TLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVHVGVMTVKETLDFSARCQGVGTRY 273 (1470)
T ss_pred EEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhcccceeEEecccccCCCcCcHHHHHHHHHHhcCCCCcc
Confidence 5899999999999999999998753 3579999999988654456779999999999999999999999988763221
Q ss_pred -----CCHHHH------------------------HHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhh
Q 048028 78 -----VTKTKK------------------------QERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIH 128 (592)
Q Consensus 78 -----~~~~~~------------------------~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~ 128 (592)
.+++++ +..++++++.+||++++||+||++.+++|||||||||+||++|+.
T Consensus 274 ~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~rglSGGerkRVsia~aL~~ 353 (1470)
T PLN03140 274 DLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIRGISGGQKKRVTTGEMIVG 353 (1470)
T ss_pred cchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCccccCCCcccceeeeehhhhcC
Confidence 112211 123678999999999999999999999999999999999999999
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEecCChhHHHhhhceEEEecCCeEeeecChhhHHHHHHHcC
Q 048028 129 DPILLFLDEPTSGLDSTSAFMVVNVLQRIAK-SGSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNETPSNLAQFFAEFG 207 (592)
Q Consensus 129 ~p~lllLDEPtsgLD~~~~~~i~~~l~~la~-~g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~~~~~~~f~~~g 207 (592)
+|++++|||||+|||+.++.++++.|+++++ .|+|+|+++|||+.+++++||+|++|++|+++|+|+++++.+||+++|
T Consensus 354 ~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~vilL~~G~ivy~G~~~~~~~yF~~lG 433 (1470)
T PLN03140 354 PTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSEGQIVYQGPRDHILEFFESCG 433 (1470)
T ss_pred CCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHHhheEEEeeCceEEEeCCHHHHHHHHHHcC
Confidence 9999999999999999999999999999987 489999999999888999999999999999999999999999999999
Q ss_pred CCCCCCCChHHHHHHhhhhhhhcc----cc---CccchHHHHHHHHHhHHHHhhccCCCCccccCCCCCCCCCCCCCCcc
Q 048028 208 HPVPENENKIEFALDLMRELEESS----SD---GITSLVEFNESWQVTKRMEIKSRKTPTFHLKMPSSDGSNLTSSVQTF 280 (592)
Q Consensus 208 ~~~p~~~n~~d~~~~~~~~~~~~~----~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (592)
++||++.|||||+++++++.++.. .. ...+..++.++|+++...+....+... ...+. ...........|
T Consensus 434 f~cP~~~n~ADFl~~v~s~~~~~~~~~~~~~p~~~~~~~~~~~~~~~s~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~y 510 (1470)
T PLN03140 434 FKCPERKGTADFLQEVTSKKDQEQYWADRNKPYRYISVSEFAERFKSFHVGMQLENELSV-PFDKS--QSHKAALVFSKY 510 (1470)
T ss_pred CCCCCCCChHHHHHHhcCchhhhhhhhccCCccccCCHHHHHHHHHhcHHHHHHHHHHhh-hhhhh--hcccccccCCCC
Confidence 999999999999999987543311 11 113567788899887654322111000 00000 001111223457
Q ss_pred cCcHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHhcCCCCCh---hhHHHHHHHHHHHHHHHHHHHHHHHH
Q 048028 281 ANPFWIETIVISKRLLTNSRRMPELFGIRFGSVLVTGFILATLFWKLQDSP---KGALKRLGFFAFAMTTIFYICAREIP 357 (592)
Q Consensus 281 ~~~~~~q~~~l~~R~~~~~~Rd~~~~~~r~~~~i~~~l~~G~~f~~~~~~~---~~~~~~~g~~f~~~~~~~~~~~~~i~ 357 (592)
..++|.|++.+++|.+++.+||+..+..|+++.+++|+++|++||+++.++ .+.+.+.|++||++.+.++.+++.++
T Consensus 511 ~~s~~~q~~~~~~R~~~~~~Rd~~~~~~r~~~~ii~ali~GsvF~~~~~~~~~~~~~~~~~g~lff~~l~~~~~~~~~l~ 590 (1470)
T PLN03140 511 SVPKMELLKACWDKEWLLMKRNAFVYVFKTVQIIIVAAIASTVFLRTEMHTRNEEDGALYIGALLFSMIINMFNGFAELA 590 (1470)
T ss_pred cCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 889999999999999999999999999999999999999999999997543 34567889888988888888889999
Q ss_pred HHHhhhhHHHHHhcCCCCCchhHHHHHHHHHHhHHHHHHHHHHhhhhhccCCcCchhHHHHHHHHHHHHHHHHHHHHHHH
Q 048028 358 ALLQERDIFIRETSYNTYRHSSYVFAHSLVSMPPITTLSITFAVTTFWAVGLSGGFSGFLFFFITIFASFWAGSSFMAFI 437 (592)
Q Consensus 358 ~~~~er~v~~rE~~~~~Y~~~~y~la~~l~~lP~~~~~~~~f~~i~Y~~~gl~~~~~~f~~f~l~~~l~~~~~~~~~~~i 437 (592)
.++.||+||+|||++++|++++|++|++++|+|+.++.+++|.+|+|||+||++++++||+|++++++..++++++++++
T Consensus 591 ~~~~~r~vf~ker~~~~Y~~~ay~la~~l~~iP~~~i~~~if~~I~Y~m~Gl~~~~~~Ff~f~l~~~l~~~~~~~l~~~i 670 (1470)
T PLN03140 591 LMIQRLPVFYKQRDLLFHPPWTFTLPTFLLGIPISIIESVVWVVITYYSIGFAPEASRFFKQLLLVFLIQQMAAGIFRLI 670 (1470)
T ss_pred HHHhccchhHHhhhccCcCHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhCcHHHHHHHHHHHHHHHHHhhccccCCCCCCcchhhhhccCcchHHHHHHHHHHhCCCC-ccccCCccccCCCCCC
Q 048028 438 AGLVSHIIIGFTIVVAILGYFLLFCGFYIPRDEIPPYWIWFHYVSLVKYPFQGVLQNEFGDPS-KCFVSGVQVFDDTPFE 516 (592)
Q Consensus 438 ~~~~~~~~~a~~~~~~~~~~~~lf~Gf~i~~~~ip~~~~W~~yiSp~~y~~~~l~~nef~~~~-~C~~~~~~~~~~~~~~ 516 (592)
++++|++.+|+++++++++++++|+||++|.++||+||+|++|+||++||+||++.|||.+.. .|. .+
T Consensus 671 ~a~~~~~~~A~~~~~~~~l~~~lf~Gf~i~~~~ip~w~~W~~yisp~~Ya~eal~~NEf~~~~~~~~-----~~------ 739 (1470)
T PLN03140 671 ASVCRTMIIANTGGALVLLLVFLLGGFILPKGEIPNWWEWAYWVSPLSYGFNALAVNEMFAPRWMNK-----MA------ 739 (1470)
T ss_pred HHHcCcHHHHHHHHHHHHHHHHHHccceechHhCchHHHHHHHhCHHHHHHHHHHHHhccCccccCc-----cc------
Confidence 999999999999999999999999999999999999999999999999999999999997654 110 00
Q ss_pred CCCchhhHHHHhhhccccCCCccCcccccchHHHHhhcCCCCCC--chHHHHHHHHHHHHHHHHHHHHHHhcc
Q 048028 517 GLPFDTKIKLLENMSNVLGNNITSSTCVTTGMKLLEQKGVTDIS--KWKCFWITVAFGFLFRVLFYFTLLFGS 587 (592)
Q Consensus 517 ~~~~~~~~~~~~~~~~~~g~~~~~~~C~~~G~~~L~~~g~~~~~--~w~~~~il~~~~~~~~~l~~~~L~~~~ 587 (592)
++.+..+|+++|+.+|+.+.+ .|+|+++|++|+++|++++|++|++.+
T Consensus 740 -----------------------~~~~~~~G~~~L~~~g~~~~~~~~w~~~~iL~~~~v~f~~l~~l~L~~~~ 789 (1470)
T PLN03140 740 -----------------------SDNSTRLGTAVLNIFDVFTDKNWYWIGVGALLGFTILFNVLFTLALTYLN 789 (1470)
T ss_pred -----------------------CCCCcccHHHHHHhcCcCccccchhhhHHHHHHHHHHHHHHHHHHHHhcC
Confidence 011236899999999998654 589999999999999999999999876
No 8
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=7.5e-101 Score=872.32 Aligned_cols=558 Identities=30% Similarity=0.515 Sum_probs=489.2
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCcccccceeEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCH
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLESKLLKIISAYVMQDDLLFPMLTVEETLMFAAEFRLPRSVTK 80 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~ 80 (592)
+||||+||||||||||+||||...+.++|+|++||.+.++..++|.+|||.|+|.|.+.+||||.|.|+|.||+|...+.
T Consensus 820 TALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q~tF~R~~GYvqQ~DiH~~~~TVrESL~fSA~LRlp~~v~~ 899 (1391)
T KOG0065|consen 820 TALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQETFARVSGYVEQQDIHSPELTVRESLRFSAALRLPKEVSD 899 (1391)
T ss_pred eehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCchhhhccccceeecccccCcccchHHHHHHHHHHcCCCcCCH
Confidence 58999999999999999999988888899999999999878899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCC-cEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Q 048028 81 TKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDP-ILLFLDEPTSGLDSTSAFMVVNVLQRIAK 159 (592)
Q Consensus 81 ~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p-~lllLDEPtsgLD~~~~~~i~~~l~~la~ 159 (592)
+++.+.|+++++.++|++++|.+||+.. +|||.+||||++||.+|+.+| .||+|||||||||+.+|..+++.+|++++
T Consensus 900 ~ek~~yVe~Vi~lleL~~~~daiVG~~G-~GLs~eQRKrLTIgVELvA~P~~ilFLDEPTSGLDsqaA~~i~~~lrkla~ 978 (1391)
T KOG0065|consen 900 EEKYEYVEEVIELLELKEYADALVGLPG-SGLSTEQRKRLTIGVELVANPSSILFLDEPTSGLDSQAAAIVMRFLRKLAD 978 (1391)
T ss_pred HHHHHHHHHHHHHhCchhhhhhhccCCC-CCCCHHHhceeeEEEEEecCCceeEEecCCCCCccHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999987 999999999999999999999 89999999999999999999999999999
Q ss_pred cCCEEEEEecCChhHHHhhhceEEEecC-CeEeeecChhh----HHHHHHHcC-CCCCCCCChHHHHHHhhhhhhhcccc
Q 048028 160 SGSIVIMSIHQPSYRILSLLDRLIILSH-GQSVYNETPSN----LAQFFAEFG-HPVPENENKIEFALDLMRELEESSSD 233 (592)
Q Consensus 160 ~g~tvi~~~H~~~~~i~~~~D~v~ll~~-G~~v~~g~~~~----~~~~f~~~g-~~~p~~~n~~d~~~~~~~~~~~~~~~ 233 (592)
.|+||+||+|||+.++++.||++++|++ |++||.|+..+ +.+||+++| .+||+..|||||++|++....+.
T Consensus 979 tGqtIlCTIHQPS~~ife~FD~LLLLkrGGqtVY~G~lG~~s~~li~YFes~~~~~~~~~~NPA~~mLevi~~~~~~--- 1055 (1391)
T KOG0065|consen 979 TGQTILCTIHQPSIDIFEAFDELLLLKRGGQTVYFGPLGENSSKLIEYFESIGGVKCISDENPAEWMLEVIGAGAEA--- 1055 (1391)
T ss_pred cCCeEEEEecCCcHHHHHHHhHHHHHhcCCeEEEecCcccccHHHHHHHHhcCCccCCCCCChHHHHHhhccccccc---
Confidence 9999999999999999999999999987 79999999864 678999986 89999999999999998754331
Q ss_pred CccchHHHHHHHHHhHHHHhhccCCCCccccCCCCCCCCCCCCCCcccCcHHHHHHHHHHHHHHHhhcChHHHHHHHHHH
Q 048028 234 GITSLVEFNESWQVTKRMEIKSRKTPTFHLKMPSSDGSNLTSSVQTFANPFWIETIVISKRLLTNSRRMPELFGIRFGSV 313 (592)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~l~~R~~~~~~Rd~~~~~~r~~~~ 313 (592)
..-.||++.|+.+.+++...+... .+.++......+....++|+.|+|.|++.+++|++..+||+|.++.+|++..
T Consensus 1056 --~~~~D~a~~w~~S~e~k~~~e~v~--~l~~~~~~~~~~~~~~~~fa~s~~~Q~k~~l~Rq~~syWRsp~y~~ar~~~~ 1131 (1391)
T KOG0065|consen 1056 --SLSVDFAEIWKNSEEYKRNKELVK--ELSQPPPGFSTDLEFKTRFAQSLWYQFKLCLWRQFLSYWRSPDYLMARFALT 1131 (1391)
T ss_pred --ccCccHHHHHhccHHHHHHHHHHH--HHhcCCccCCcccccccccchhHHHHHHHHHHHHHHHHhCCcHHHHHHHHHH
Confidence 222379999998887764332111 1111111111223344578999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCChhhHHHHHHHHHHHHHHHHHHHHH-HHHHHHhhhhHHHHHhcCCCCCchhHHHHHHHHHHhHH
Q 048028 314 LVTGFILATLFWKLQDSPKGALKRLGFFAFAMTTIFYICAR-EIPALLQERDIFIRETSYNTYRHSSYVFAHSLVSMPPI 392 (592)
Q Consensus 314 i~~~l~~G~~f~~~~~~~~~~~~~~g~~f~~~~~~~~~~~~-~i~~~~~er~v~~rE~~~~~Y~~~~y~la~~l~~lP~~ 392 (592)
++.|+++|+.||+++++.++++|.+|++|+.+.+......+ ..+.+..||.+++||+++|+||+.+|++|++++|+|+.
T Consensus 1132 i~~gl~iGf~F~~~g~~~q~lqn~m~a~yma~v~~~~~~~~~~~~~v~~e~~y~~RE~~s~mYs~~~~~~aq~~vEiP~~ 1211 (1391)
T KOG0065|consen 1132 IVAGLFIGFTFWKVGHNVQGLQNAMGAAYMATVFSGPNNNQLQQPAVATERLYEYRERASNMYSWTPFALAQVLVEIPYN 1211 (1391)
T ss_pred HHHHHhheeeeeecCCcHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHhhhhhheeeecccCcccHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999998887765555 45566789999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhhccCCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHHHHhhccccCCCCCC
Q 048028 393 TTLSITFAVTTFWAVGLSGGFSGFLFFFITIFASFWAGSSFMAFIAGLVSHIIIGFTIVVAILGYFLLFCGFYIPRDEIP 472 (592)
Q Consensus 393 ~~~~~~f~~i~Y~~~gl~~~~~~f~~f~l~~~l~~~~~~~~~~~i~~~~~~~~~a~~~~~~~~~~~~lf~Gf~i~~~~ip 472 (592)
++++++|.+++|+++||.+++.+|++|++..++..++...+|+++.+++||.+.|..+.+.+..++.+|||+++|++.||
T Consensus 1212 l~~stl~~~~~Y~~iGF~~~a~~~~~f~~~~~~f~lYf~~~Gmm~~s~tPn~~~Aav~~s~~~s~~~~F~G~l~p~~~iP 1291 (1391)
T KOG0065|consen 1212 LLQSTLFFLITYYPIGFYWTASKFFWFLLFMFIFFLYFTTLGMMLVSLTPNLQTAAVIASLFFSFWNLFSGFLQPRSLIP 1291 (1391)
T ss_pred HHHHHHhheeeeeeccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHhccccccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhhhccCcchHHHHHHHHHHhCCCC-ccccCCccccCCCCCCCCCchhhHHHHhhhccccCCCccCcc---cc-cch
Q 048028 473 PYWIWFHYVSLVKYPFQGVLQNEFGDPS-KCFVSGVQVFDDTPFEGLPFDTKIKLLENMSNVLGNNITSST---CV-TTG 547 (592)
Q Consensus 473 ~~~~W~~yiSp~~y~~~~l~~nef~~~~-~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~---C~-~~G 547 (592)
.||+|++|+||+.|..++++..+++|.+ .|...+...+++ |.+..+++....+....+++.-++.+... |. ..+
T Consensus 1292 ~fW~wmy~lsP~ty~l~gli~~~~~d~~v~c~~~e~~~~~p-p~g~tcge~m~~~~~~~~Gy~~n~~a~~~c~~c~y~v~ 1370 (1391)
T KOG0065|consen 1292 KFWIWMYYLSPVTYTLEGLISSQLGDVEVTCEDSEMNYFDP-PSGQTCGEFMEDFFGEGTGYLHNPLATTACVYCAYTVA 1370 (1391)
T ss_pred ceeeeeeecCcHHHHHHHHHHHHhCCCceeeecCCccccCC-CCCcCHHHHHHHHhccCcceeccCcceeEEEEeeeehH
Confidence 9999999999999999999999999998 998766554433 22233333333344333334433333334 53 679
Q ss_pred HHHHhhcCCCCCCchHHHHH
Q 048028 548 MKLLEQKGVTDISKWKCFWI 567 (592)
Q Consensus 548 ~~~L~~~g~~~~~~w~~~~i 567 (592)
+++|..+++...++|||+||
T Consensus 1371 ~~~l~~f~~~y~~~wrnfgi 1390 (1391)
T KOG0065|consen 1371 DAFLAAFNIKYLNFWRNFGI 1390 (1391)
T ss_pred HHHHHHHHHHHHHHHHhhcc
Confidence 99999999999999999997
No 9
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=5.8e-94 Score=816.09 Aligned_cols=570 Identities=28% Similarity=0.494 Sum_probs=503.6
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCC-CceeEEEECCEecCcccccceeEEEccCCCCCCCCCHHHHHHHHHHccCCCCC-
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKE-SLQGAVTLNGEVLESKLLKIISAYVMQDDLLFPMLTVEETLMFAAEFRLPRSV- 78 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~-~~~G~I~i~g~~~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~~~~~- 78 (592)
+.++||+||||||||++|+|.++.. ...|+|.+||.+.+....++.++|.+|+|.|+|+|||+|+|.|+++++.+...
T Consensus 144 ~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~~~~~aY~~e~DvH~p~lTVreTldFa~rck~~~~r~ 223 (1391)
T KOG0065|consen 144 TLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVPKKTVAYNSEQDVHFPELTVRETLDFAARCKGPGSRY 223 (1391)
T ss_pred EEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCcccccccCceEEeccccccccceeEEeehhhHHHhccCCcccc
Confidence 3589999999999999999998742 23689999999987655578899999999999999999999999999987432
Q ss_pred ---CHHHHH-HHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHH
Q 048028 79 ---TKTKKQ-ERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVNVL 154 (592)
Q Consensus 79 ---~~~~~~-~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l 154 (592)
++.++. +.+|.+++.+||++|+||+|||+..||+||||||||++|.+++.+|+++++||+|+|||+.++.++++.|
T Consensus 224 ~~~~R~e~~~~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~~De~t~GLDSsTal~iik~l 303 (1391)
T KOG0065|consen 224 DEVSRREKLAAMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILFWDEITRGLDSSTAFQIIKAL 303 (1391)
T ss_pred ccccHHHHHHHHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCcceeeeecccccccHHHHHHHHHHH
Confidence 233322 2678999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHc-CCEEEEEecCChhHHHhhhceEEEecCCeEeeecChhhHHHHHHHcCCCCCCCCChHHHHHHhhhhhhhcc--
Q 048028 155 QRIAKS-GSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNETPSNLAQFFAEFGHPVPENENKIEFALDLMRELEESS-- 231 (592)
Q Consensus 155 ~~la~~-g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~~~~~~~f~~~g~~~p~~~n~~d~~~~~~~~~~~~~-- 231 (592)
|++++. +.|+++++|||+.+++++||+|++|++|+++|+||.+++++||+++|+.||++.++|||+.+++++..+..
T Consensus 304 r~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~eG~~iy~Gp~d~~~~yFe~~Gf~cP~r~~~ADfLt~vts~k~~~~~~ 383 (1391)
T KOG0065|consen 304 RQLAHITGATALVSILQPSPEIYDLFDDVILLSEGYQIYQGPRDEVLPYFEDMGFKCPPRKGTADFLTEVTSKKDQEQYW 383 (1391)
T ss_pred HHHHhhhcceEEEEeccCChHHHHhhhheeeeeccceEEeccHHHHHHHHHhcCccCCCccCHHHHHHHhhcCccccccc
Confidence 999984 88999999999999999999999999999999999999999999999999999999999999998322211
Q ss_pred -----ccCccchHHHHHHHHHhHHHHhhccCCCCccccCCCCCCCCCCCCCCcccCcHHHHHHHHHHHHHHHhhcChHHH
Q 048028 232 -----SDGITSLVEFNESWQVTKRMEIKSRKTPTFHLKMPSSDGSNLTSSVQTFANPFWIETIVISKRLLTNSRRMPELF 306 (592)
Q Consensus 232 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~l~~R~~~~~~Rd~~~~ 306 (592)
.....+..|+.+.|..++.+.....+.+. .......++.....++|..|+|.|++.+++|.+..+.||..++
T Consensus 384 ~~~~~~~~~~~~~ef~~~~~~s~~~~~l~~~l~~---~~~~~k~~~~al~s~~y~v~~~~qvk~c~~R~f~l~k~n~~~~ 460 (1391)
T KOG0065|consen 384 NKRSKPYPYTSVSEFAEYFLNSEDYAKLKKELSK---PYDKSKKHKAALVSSKYSVPYWEQVKACTIREFLLMKRNYFYY 460 (1391)
T ss_pred cccCCCcccCCHHHHHHHHhcchhhHHHHHHhcc---hhhhhhccchhhcCCceeccHHHHHHHHHHHHHHHHhCCceEE
Confidence 11123447889999888776533211110 0000112233445567889999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCC-CChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhcCCCCCchhHHHHHH
Q 048028 307 GIRFGSVLVTGFILATLFWKLQ-DSPKGALKRLGFFAFAMTTIFYICAREIPALLQERDIFIRETSYNTYRHSSYVFAHS 385 (592)
Q Consensus 307 ~~r~~~~i~~~l~~G~~f~~~~-~~~~~~~~~~g~~f~~~~~~~~~~~~~i~~~~~er~v~~rE~~~~~Y~~~~y~la~~ 385 (592)
..++++.+++|+++|++|++++ .+..+.+.|.|++||++.+.++..++.++...+.||||+|||...+|++|+|.++.+
T Consensus 461 ~~~~~~~~i~ali~gslF~~~~~~t~~~~~~~~~~lffsll~~~f~~laEi~~~~~~~pv~~Khr~~~fY~p~A~al~s~ 540 (1391)
T KOG0065|consen 461 VFKTVQLVIQALITGSLFYRTPMSTTSGGYSRGGALFFALLFNLFNGLAEIALTFQRLPVFYKHRDLSFYPPWAEALAST 540 (1391)
T ss_pred EhHHHHHHHHHHHHhhheeeccCcccccchhhhhHHHHHHHHHHHHhHHHHHHHHhhcchHHHhhcccccChHHHHHHHH
Confidence 9999999999999999999999 888899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhHHHHHHHHHHhhhhhccCCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHHHHhhccc
Q 048028 386 LVSMPPITTLSITFAVTTFWAVGLSGGFSGFLFFFITIFASFWAGSSFMAFIAGLVSHIIIGFTIVVAILGYFLLFCGFY 465 (592)
Q Consensus 386 l~~lP~~~~~~~~f~~i~Y~~~gl~~~~~~f~~f~l~~~l~~~~~~~~~~~i~~~~~~~~~a~~~~~~~~~~~~lf~Gf~ 465 (592)
++++|+.++.+++|.+|+||++||.+++++||++++++++..+++++++++++++++++.+|++++++.++.+.+++||+
T Consensus 541 l~~~P~~~i~~~vf~iI~Yfl~gl~~~A~rFF~~fL~lf~~~~~~s~lFr~ia~l~~t~~~An~~g~~~~L~i~m~~Gf~ 620 (1391)
T KOG0065|consen 541 LLKIPSSFIESVVFVIITYFLIGLKRNAGRFFIQFLFLFLCQFCMSGLFRFIASLSRTLSIANLIGGILLLVLFMYGGFV 620 (1391)
T ss_pred HHhCcHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHhhHhHHHHHHHHHHccee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCcchhhhhccCcchHHHHHHHHHHhCCCC-ccccCCccccCCCCCCCCCchhhHHHHhhhccccCCCccCcccc
Q 048028 466 IPRDEIPPYWIWFHYVSLVKYPFQGVLQNEFGDPS-KCFVSGVQVFDDTPFEGLPFDTKIKLLENMSNVLGNNITSSTCV 544 (592)
Q Consensus 466 i~~~~ip~~~~W~~yiSp~~y~~~~l~~nef~~~~-~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~C~ 544 (592)
||.++||+||+|++|+||+.|++|+++.|||+++. .|.+.+ +.+.+++. .++.|...++.+|+++
T Consensus 621 Ip~~~m~~W~~Wi~yinPl~Y~fesl~~NEF~~~~~~c~p~g------p~y~n~~~--~~~~c~~~~~~~G~~~------ 686 (1391)
T KOG0065|consen 621 IPKKDMPPWFRWIAYINPLMYAFESLMSNEFHGRRWPCSPSG------PAYDNISI--ENKVCAATGATLGNDY------ 686 (1391)
T ss_pred eeccccchHHHHHHHHCHHHHHHHHHHHhhhhcccCCCCCCC------Cccccccc--ccccchhhccccCceE------
Confidence 99999999999999999999999999999999999 895322 11112332 3577888888888875
Q ss_pred cchHHHH-hhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhcc
Q 048028 545 TTGMKLL-EQKGVTDISKWKCFWITVAFGFLFRVLFYFTLLFGS 587 (592)
Q Consensus 545 ~~G~~~L-~~~g~~~~~~w~~~~il~~~~~~~~~l~~~~L~~~~ 587 (592)
+.|++++ .+|++++.+.|+|+||++||.++|.++..+++-|.+
T Consensus 687 v~g~~~l~~~~~y~~~~~Wr~~gillgf~v~f~~~~~ia~~yl~ 730 (1391)
T KOG0065|consen 687 VSGRDYLKVQYQYEYKWYWRNFGILLGFTVFFNFVFLIALEYLK 730 (1391)
T ss_pred EecccccccccccccceeEeehhHHHHHHHHHHHHHHHHHHhcC
Confidence 7899999 459999999999999999999999999999999886
No 10
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=2.4e-47 Score=361.51 Aligned_cols=189 Identities=31% Similarity=0.510 Sum_probs=171.4
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCc----ccccceeEEEccCCCCCCCCCHHHHHHHHHHccCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLES----KLLKIISAYVMQDDLLFPMLTVEETLMFAAEFRLPR 76 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~----~~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~~~ 76 (592)
++|+||||||||||||||.++..++ +|+|.++|+++.. ...|+.+|+|+|+..|||++||.||+..+...- .
T Consensus 31 v~iiGpSGSGKSTlLRclN~LE~~~--~G~I~i~g~~~~~~~~~~~~R~~vGmVFQ~fnLFPHlTvleNv~lap~~v--~ 106 (240)
T COG1126 31 VVIIGPSGSGKSTLLRCLNGLEEPD--SGSITVDGEDVGDKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLAPVKV--K 106 (240)
T ss_pred EEEECCCCCCHHHHHHHHHCCcCCC--CceEEECCEeccchhhHHHHHHhcCeecccccccccchHHHHHHhhhHHH--c
Confidence 4799999999999999999998754 5999999987642 356788999999999999999999999875422 3
Q ss_pred CCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHH
Q 048028 77 SVTKTKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVNVLQR 156 (592)
Q Consensus 77 ~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~ 156 (592)
..++++.++++.++|+++||.+.+|. ++.+|||||||||+|||||+.+|+++|+|||||+|||+...++.+.+++
T Consensus 107 ~~~k~eA~~~A~~lL~~VGL~~ka~~-----yP~qLSGGQqQRVAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~ 181 (240)
T COG1126 107 KLSKAEAREKALELLEKVGLADKADA-----YPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKD 181 (240)
T ss_pred CCCHHHHHHHHHHHHHHcCchhhhhh-----CccccCcHHHHHHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHH
Confidence 56788999999999999999998865 4567999999999999999999999999999999999999999999999
Q ss_pred HHHcCCEEEEEecCChhHHHhhhceEEEecCCeEeeecChhhH
Q 048028 157 IAKSGSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNETPSNL 199 (592)
Q Consensus 157 la~~g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~~~~ 199 (592)
||++|.|.|++||+.. -+.+.+|||++|++|+++..|+++++
T Consensus 182 LA~eGmTMivVTHEM~-FAr~VadrviFmd~G~iie~g~p~~~ 223 (240)
T COG1126 182 LAEEGMTMIIVTHEMG-FAREVADRVIFMDQGKIIEEGPPEEF 223 (240)
T ss_pred HHHcCCeEEEEechhH-HHHHhhheEEEeeCCEEEEecCHHHH
Confidence 9999999999999998 48899999999999999999998765
No 11
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=1.6e-44 Score=371.78 Aligned_cols=194 Identities=38% Similarity=0.587 Sum_probs=174.8
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCc--ccccceeEEEccCCCCCCCCCHHHHHHHHHHccCCCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLES--KLLKIISAYVMQDDLLFPMLTVEETLMFAAEFRLPRSV 78 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~--~~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~~~~~ 78 (592)
+|++||||||||||+|+|+|+.+| .+|+|.++|.+... ...++.+||++|++.+++.+||+|||.|.+.++.+.
T Consensus 34 ~gllG~NGAGKTTllk~l~gl~~p--~~G~i~i~G~~~~~~~~~~~~~igy~~~~~~~~~~lT~~e~l~~~~~l~~~~-- 109 (293)
T COG1131 34 FGLLGPNGAGKTTLLKILAGLLKP--TSGEILVLGYDVVKEPAKVRRRIGYVPQEPSLYPELTVRENLEFFARLYGLS-- 109 (293)
T ss_pred EEEECCCCCCHHHHHHHHhCCcCC--CceEEEEcCEeCccCHHHHHhheEEEccCCCCCccccHHHHHHHHHHHhCCC--
Confidence 489999999999999999999986 46999999998765 456778999999999999999999999999988543
Q ss_pred CHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 048028 79 TKTKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVNVLQRIA 158 (592)
Q Consensus 79 ~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~la 158 (592)
+...+++++++++.+||.+..++++ ++||+||||||+||+||+++|+++||||||+||||.++.++.+.|++++
T Consensus 110 -~~~~~~~~~~~l~~~~L~~~~~~~~-----~~lS~G~kqrl~ia~aL~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~ 183 (293)
T COG1131 110 -KEEAEERIEELLELFGLEDKANKKV-----RTLSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRREIWELLRELA 183 (293)
T ss_pred -hhHHHHHHHHHHHHcCCchhhCcch-----hhcCHHHHHHHHHHHHHhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHH
Confidence 2456788999999999998555444 5699999999999999999999999999999999999999999999999
Q ss_pred HcC-CEEEEEecCChhHHHhhhceEEEecCCeEeeecChhhHHHHHHH
Q 048028 159 KSG-SIVIMSIHQPSYRILSLLDRLIILSHGQSVYNETPSNLAQFFAE 205 (592)
Q Consensus 159 ~~g-~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~~~~~~~f~~ 205 (592)
++| +||+++||+++ ++..+||+|++|++|++++.|+++++.+.+..
T Consensus 184 ~~g~~tvlissH~l~-e~~~~~d~v~il~~G~~~~~g~~~~l~~~~~~ 230 (293)
T COG1131 184 KEGGVTILLSTHILE-EAEELCDRVIILNDGKIIAEGTPEELKEKFGG 230 (293)
T ss_pred hCCCcEEEEeCCcHH-HHHHhCCEEEEEeCCEEEEeCCHHHHHHhhcc
Confidence 987 89999999998 79999999999999999999999998776653
No 12
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=3.5e-44 Score=346.36 Aligned_cols=191 Identities=28% Similarity=0.508 Sum_probs=173.9
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCc---ccccceeEEEccCCCCCCCCCHHHHHHHHHHccCCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLES---KLLKIISAYVMQDDLLFPMLTVEETLMFAAEFRLPRS 77 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~---~~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~~~~ 77 (592)
++++|||||||||+||+|.+++.|+ +|+|.+||+++.. ..+|+.+|||-|...|||++||.||+.+...+. .
T Consensus 30 ~vliGpSGsGKTTtLkMINrLiept--~G~I~i~g~~i~~~d~~~LRr~IGYviQqigLFPh~Tv~eNIa~VP~L~---~ 104 (309)
T COG1125 30 LVLIGPSGSGKTTTLKMINRLIEPT--SGEILIDGEDISDLDPVELRRKIGYVIQQIGLFPHLTVAENIATVPKLL---G 104 (309)
T ss_pred EEEECCCCCcHHHHHHHHhcccCCC--CceEEECCeecccCCHHHHHHhhhhhhhhcccCCCccHHHHHHhhhhhc---C
Confidence 3689999999999999999999864 5999999999865 467889999999999999999999999887765 4
Q ss_pred CCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 048028 78 VTKTKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVNVLQRI 157 (592)
Q Consensus 78 ~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~l 157 (592)
.++++.+++++++++.+||++.. ..++++++|||||+|||.+||||+.+|++||+|||+++|||.++.++.+.++++
T Consensus 105 w~k~~i~~r~~ELl~lvgL~p~~---~~~RyP~eLSGGQQQRVGv~RALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~l 181 (309)
T COG1125 105 WDKERIKKRADELLDLVGLDPSE---YADRYPHELSGGQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEIKEL 181 (309)
T ss_pred CCHHHHHHHHHHHHHHhCCCHHH---HhhcCchhcCcchhhHHHHHHHHhcCCCeEeecCCccccChhhHHHHHHHHHHH
Confidence 67888999999999999997521 225678899999999999999999999999999999999999999999999999
Q ss_pred HHc-CCEEEEEecCChhHHHhhhceEEEecCCeEeeecChhhHH
Q 048028 158 AKS-GSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNETPSNLA 200 (592)
Q Consensus 158 a~~-g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~~~~~ 200 (592)
.++ |+|||++|||.+ |++.++|||++|++|+++..++|+++.
T Consensus 182 q~~l~kTivfVTHDid-EA~kLadri~vm~~G~i~Q~~~P~~il 224 (309)
T COG1125 182 QKELGKTIVFVTHDID-EALKLADRIAVMDAGEIVQYDTPDEIL 224 (309)
T ss_pred HHHhCCEEEEEecCHH-HHHhhhceEEEecCCeEEEeCCHHHHH
Confidence 875 999999999997 799999999999999999999999884
No 13
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3.9e-44 Score=368.61 Aligned_cols=189 Identities=29% Similarity=0.498 Sum_probs=174.4
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCcc-cccceeEEEccCCCCCCCCCHHHHHHHHHHccCCCCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLESK-LLKIISAYVMQDDLLFPMLTVEETLMFAAEFRLPRSVT 79 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~~-~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~ 79 (592)
++|+||||||||||||+|||+.++ ++|+|.++|++++.. ..+|.+++|+|+..|||+|||+||+.|+.+++ ..+
T Consensus 32 ~vllGPSGcGKSTlLr~IAGLe~~--~~G~I~i~g~~vt~l~P~~R~iamVFQ~yALyPhmtV~~Niaf~Lk~~---~~~ 106 (338)
T COG3839 32 VVLLGPSGCGKSTLLRMIAGLEEP--TSGEILIDGRDVTDLPPEKRGIAMVFQNYALYPHMTVYENIAFGLKLR---GVP 106 (338)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEECCCCChhHCCEEEEeCCccccCCCcHHHHhhhhhhhC---CCc
Confidence 479999999999999999999875 459999999999873 45677999999999999999999999999876 467
Q ss_pred HHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Q 048028 80 KTKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVNVLQRIAK 159 (592)
Q Consensus 80 ~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~la~ 159 (592)
+++.+++|+++.+.|+|++..|++ +++|||||||||+|||||+.+|+++|+|||+|+||+..+..+...|+++.+
T Consensus 107 k~ei~~rV~eva~~L~l~~lL~r~-----P~~LSGGQrQRVAlaRAlVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~ 181 (338)
T COG3839 107 KAEIDKRVKEVAKLLGLEHLLNRK-----PLQLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHE 181 (338)
T ss_pred hHHHHHHHHHHHHHcCChhHHhcC-----cccCChhhHHHHHHHHHHhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHH
Confidence 888999999999999999998765 457999999999999999999999999999999999999999999999987
Q ss_pred c-CCEEEEEecCChhHHHhhhceEEEecCCeEeeecChhhHH
Q 048028 160 S-GSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNETPSNLA 200 (592)
Q Consensus 160 ~-g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~~~~~ 200 (592)
+ |.|+|.+|||.. |+..++||+.+|++|++...|+|.++.
T Consensus 182 ~l~~T~IYVTHDq~-EAmtladri~Vm~~G~i~Q~g~p~ely 222 (338)
T COG3839 182 RLGTTTIYVTHDQV-EAMTLADRIVVMNDGRIQQVGTPLELY 222 (338)
T ss_pred hcCCcEEEEcCCHH-HHHhhCCEEEEEeCCeeeecCChHHHh
Confidence 5 899999999986 799999999999999999999999884
No 14
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.3e-44 Score=355.59 Aligned_cols=188 Identities=29% Similarity=0.459 Sum_probs=172.5
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCc------ccccceeEEEccCCCCCCCCCHHHHHHHHHHccC
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLES------KLLKIISAYVMQDDLLFPMLTVEETLMFAAEFRL 74 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~------~~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~ 74 (592)
.||+|.||||||||+|++.++..|+ +|+|.++|+++.. ...|+.+|+++|+..|+...||.||+.|..++.
T Consensus 35 ~GIIG~SGAGKSTLiR~iN~Le~Pt--sG~v~v~G~di~~l~~~~Lr~~R~~IGMIFQhFnLLssrTV~~NvA~PLeia- 111 (339)
T COG1135 35 FGIIGYSGAGKSTLLRLINLLERPT--SGSVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLLSSRTVFENVAFPLELA- 111 (339)
T ss_pred EEEEcCCCCcHHHHHHHHhccCCCC--CceEEEcCEecccCChHHHHHHHhhccEEeccccccccchHHhhhhhhHhhc-
Confidence 3899999999999999999998754 5999999988754 246788999999999999999999999998875
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHH
Q 048028 75 PRSVTKTKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVNVL 154 (592)
Q Consensus 75 ~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l 154 (592)
..++++.++||.++++.+||++.+|. ++.+|||||||||+|||||+.+|+|||+|||||+|||.+...|+++|
T Consensus 112 --g~~k~ei~~RV~elLelVgL~dk~~~-----yP~qLSGGQKQRVaIARALa~~P~iLL~DEaTSALDP~TT~sIL~LL 184 (339)
T COG1135 112 --GVPKAEIKQRVAELLELVGLSDKADR-----YPAQLSGGQKQRVAIARALANNPKILLCDEATSALDPETTQSILELL 184 (339)
T ss_pred --CCCHHHHHHHHHHHHHHcCChhhhcc-----CchhcCcchhhHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHH
Confidence 47789999999999999999988864 45679999999999999999999999999999999999999999999
Q ss_pred HHHHHc-CCEEEEEecCChhHHHhhhceEEEecCCeEeeecChhhH
Q 048028 155 QRIAKS-GSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNETPSNL 199 (592)
Q Consensus 155 ~~la~~-g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~~~~ 199 (592)
+++.++ |.||+++||+++ -+.++||||.+|++|+++..|++.++
T Consensus 185 ~~In~~lglTIvlITHEm~-Vvk~ic~rVavm~~G~lvE~G~v~~v 229 (339)
T COG1135 185 KDINRELGLTIVLITHEME-VVKRICDRVAVLDQGRLVEEGTVSEV 229 (339)
T ss_pred HHHHHHcCCEEEEEechHH-HHHHHhhhheEeeCCEEEEeccHHHh
Confidence 999875 999999999998 58999999999999999999998876
No 15
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1e-43 Score=352.02 Aligned_cols=191 Identities=29% Similarity=0.496 Sum_probs=172.3
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCE---ecCc-ccccceeEEEccCCCCCCCCCHHHHHHHHHHccCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGE---VLES-KLLKIISAYVMQDDLLFPMLTVEETLMFAAEFRLPR 76 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~---~~~~-~~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~~~ 76 (592)
+|++|||||||||||++|||+..|+ +|.|.+||+ +.+. ....+.+|||+|+-.+|++|||.||+.|+.+.+ ..
T Consensus 31 vaLlGpSGaGKsTlLRiIAGLe~p~--~G~I~~~~~~l~D~~~~~~~~R~VGfvFQ~YALF~HmtVa~NIAFGl~~~-~~ 107 (345)
T COG1118 31 VALLGPSGAGKSTLLRIIAGLETPD--AGRIRLNGRVLFDVSNLAVRDRKVGFVFQHYALFPHMTVADNIAFGLKVR-KE 107 (345)
T ss_pred EEEECCCCCcHHHHHHHHhCcCCCC--CceEEECCEeccchhccchhhcceeEEEechhhcccchHHhhhhhccccc-cc
Confidence 5899999999999999999998865 599999999 5544 234467999999999999999999999999876 22
Q ss_pred CCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHH
Q 048028 77 SVTKTKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVNVLQR 156 (592)
Q Consensus 77 ~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~ 156 (592)
..++.+.+.+++++|+.+.|++.++ .++.+|||||||||++||||+.+|++||||||+++||..-+.++.+.|++
T Consensus 108 ~p~~~~~r~rv~elL~lvqL~~la~-----ryP~QLSGGQrQRVALARALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~ 182 (345)
T COG1118 108 RPSEAEIRARVEELLRLVQLEGLAD-----RYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRK 182 (345)
T ss_pred CCChhhHHHHHHHHHHHhcccchhh-----cCchhcChHHHHHHHHHHHhhcCCCeEeecCCchhhhHHHHHHHHHHHHH
Confidence 3456778899999999999998774 56778999999999999999999999999999999999999999999999
Q ss_pred HHHc-CCEEEEEecCChhHHHhhhceEEEecCCeEeeecChhhHH
Q 048028 157 IAKS-GSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNETPSNLA 200 (592)
Q Consensus 157 la~~-g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~~~~~ 200 (592)
+.++ |.|++++|||+. |+++++|||++|++|+|...|+++|+-
T Consensus 183 ~~~~~~~ttvfVTHD~e-ea~~ladrvvvl~~G~Ieqvg~p~ev~ 226 (345)
T COG1118 183 LHDRLGVTTVFVTHDQE-EALELADRVVVLNQGRIEQVGPPDEVY 226 (345)
T ss_pred HHHhhCceEEEEeCCHH-HHHhhcceEEEecCCeeeeeCCHHHHh
Confidence 9876 999999999997 799999999999999999999999884
No 16
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=2.8e-43 Score=343.07 Aligned_cols=179 Identities=33% Similarity=0.529 Sum_probs=156.9
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCcc-------cccceeEEEccCCCCCCCCCHHHHHHHHHHcc
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLESK-------LLKIISAYVMQDDLLFPMLTVEETLMFAAEFR 73 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~~-------~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~ 73 (592)
++|+|||||||||||++|+|+.+| ++|+|.++|++++.. ..++.+|||+|+..|.|++||+||+.+.+.+.
T Consensus 34 vaI~GpSGSGKSTLLniig~ld~p--t~G~v~i~g~d~~~l~~~~~~~~R~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~ 111 (226)
T COG1136 34 VAIVGPSGSGKSTLLNLLGGLDKP--TSGEVLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLLPDLTVLENVELPLLIA 111 (226)
T ss_pred EEEECCCCCCHHHHHHHHhcccCC--CCceEEECCEEcCcCCHHHHHHHHHHhEEEECccCCCCCCCCHHHHHHhHHHHc
Confidence 589999999999999999999886 469999999887531 23456899999999999999999999887654
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHH
Q 048028 74 LPRSVTKTKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVNV 153 (592)
Q Consensus 74 ~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~ 153 (592)
. .+..+.+++++++++.+||++..+ +.++.+|||||||||+|||||+++|++++.||||.+||+.++..++++
T Consensus 112 ~---~~~~~~~~~~~~l~~~lgl~~~~~----~~~p~eLSGGqqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~l 184 (226)
T COG1136 112 G---KSAGRRKRAAEELLEVLGLEDRLL----KKKPSELSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLEL 184 (226)
T ss_pred C---CChhHHHHHHHHHHHhcCChhhhc----cCCchhcCHHHHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHH
Confidence 2 233366788999999999997665 134567999999999999999999999999999999999999999999
Q ss_pred HHHHHHc-CCEEEEEecCChhHHHhhhceEEEecCCeE
Q 048028 154 LQRIAKS-GSIVIMSIHQPSYRILSLLDRLIILSHGQS 190 (592)
Q Consensus 154 l~~la~~-g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~ 190 (592)
+++++++ |+|+|++||||. +...|||++.|.+|++
T Consensus 185 l~~~~~~~g~tii~VTHd~~--lA~~~dr~i~l~dG~~ 220 (226)
T COG1136 185 LRELNKERGKTIIMVTHDPE--LAKYADRVIELKDGKI 220 (226)
T ss_pred HHHHHHhcCCEEEEEcCCHH--HHHhCCEEEEEeCCee
Confidence 9999876 999999999985 7889999999999983
No 17
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=100.00 E-value=8.8e-44 Score=332.68 Aligned_cols=190 Identities=29% Similarity=0.478 Sum_probs=176.9
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCc--ccccceeEEEccCCCCCCCCCHHHHHHHHHHccCCCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLES--KLLKIISAYVMQDDLLFPMLTVEETLMFAAEFRLPRSV 78 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~--~~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~~~~~ 78 (592)
++|+|||||||||+|++|++++.|+ +|.|+++|.+..+ ...++.+|.++.+..++..||++|||.|.+++. .+
T Consensus 31 ~GlLG~NGAGKTT~LRmiatlL~P~--~G~v~idg~d~~~~p~~vrr~IGVl~~e~glY~RlT~rEnl~~Fa~L~---~l 105 (245)
T COG4555 31 TGLLGENGAGKTTLLRMIATLLIPD--SGKVTIDGVDTVRDPSFVRRKIGVLFGERGLYARLTARENLKYFARLN---GL 105 (245)
T ss_pred EEEEcCCCCCchhHHHHHHHhccCC--CceEEEeecccccChHHHhhhcceecCCcChhhhhhHHHHHHHHHHHh---hh
Confidence 5899999999999999999999865 5999999998754 457888999998889999999999999999886 56
Q ss_pred CHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 048028 79 TKTKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVNVLQRIA 158 (592)
Q Consensus 79 ~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~la 158 (592)
+..+.+++++++.+.|+|.++.|+++|+ +|.|+||||+|||||+++|++++|||||||||..+...+.+.++++.
T Consensus 106 ~~~~~kari~~l~k~l~l~~~~~rRv~~-----~S~G~kqkV~iARAlvh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k 180 (245)
T COG4555 106 SRKEIKARIAELSKRLQLLEYLDRRVGE-----FSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLK 180 (245)
T ss_pred hhhHHHHHHHHHHHHhChHHHHHHHHhh-----hchhhHHHHHHHHHHhcCCCeEEEcCCCCCccHHHHHHHHHHHHHhh
Confidence 7788899999999999999999999885 99999999999999999999999999999999999999999999999
Q ss_pred HcCCEEEEEecCChhHHHhhhceEEEecCCeEeeecChhhHHH
Q 048028 159 KSGSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNETPSNLAQ 201 (592)
Q Consensus 159 ~~g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~~~~~~ 201 (592)
++|++||.++|.++ |+.++||||++|++|++++.|+++++..
T Consensus 181 ~egr~viFSSH~m~-EvealCDrvivlh~Gevv~~gs~~~l~~ 222 (245)
T COG4555 181 NEGRAVIFSSHIMQ-EVEALCDRVIVLHKGEVVLEGSIEALDA 222 (245)
T ss_pred cCCcEEEEecccHH-HHHHhhheEEEEecCcEEEcCCHHHHHH
Confidence 99999999999997 7999999999999999999999987754
No 18
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=1.1e-43 Score=367.07 Aligned_cols=204 Identities=29% Similarity=0.477 Sum_probs=179.7
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCcc-cccceeEEEccCCCCCCCCCHHHHHHHHHHccCCCCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLESK-LLKIISAYVMQDDLLFPMLTVEETLMFAAEFRLPRSVT 79 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~~-~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~ 79 (592)
++|+|||||||||||++|||+..|+ +|+|.++|++++.. ..+|.+|+|+|+-.|||+|||+||+.|+.+++ +...
T Consensus 34 ~~lLGPSGcGKTTlLR~IAGfe~p~--~G~I~l~G~~i~~lpp~kR~ig~VFQ~YALFPHltV~~NVafGLk~~--~~~~ 109 (352)
T COG3842 34 VTLLGPSGCGKTTLLRMIAGFEQPS--SGEILLDGEDITDVPPEKRPIGMVFQSYALFPHMTVEENVAFGLKVR--KKLK 109 (352)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCCC--CceEEECCEECCCCChhhcccceeecCcccCCCCcHHHHhhhhhhhc--CCCC
Confidence 4799999999999999999998864 59999999999864 35677999999999999999999999998744 3345
Q ss_pred HHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Q 048028 80 KTKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVNVLQRIAK 159 (592)
Q Consensus 80 ~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~la~ 159 (592)
+++.+++|+++++.++|++.++.+ +.+|||||||||+|||||+.+|++||||||.|+||..-+.++...|+++.+
T Consensus 110 ~~~i~~rv~e~L~lV~L~~~~~R~-----p~qLSGGQqQRVALARAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~ 184 (352)
T COG3842 110 KAEIKARVEEALELVGLEGFADRK-----PHQLSGGQQQRVALARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQR 184 (352)
T ss_pred HHHHHHHHHHHHHHcCchhhhhhC-----hhhhChHHHHHHHHHHHhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHH
Confidence 677889999999999999987654 567999999999999999999999999999999999999999999999987
Q ss_pred c-CCEEEEEecCChhHHHhhhceEEEecCCeEeeecChhhHHHHHHHcCCCCCCCCChHHHHHH
Q 048028 160 S-GSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNETPSNLAQFFAEFGHPVPENENKIEFALD 222 (592)
Q Consensus 160 ~-g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~~~~~~~f~~~g~~~p~~~n~~d~~~~ 222 (592)
+ |.|.|++|||.+ |+..++|||.+|++|++...|+|+++- ..|.+.-.|||+-+
T Consensus 185 ~~giT~i~VTHDqe-EAl~msDrI~Vm~~G~I~Q~gtP~eiY--------~~P~~~fVA~FiG~ 239 (352)
T COG3842 185 ELGITFVYVTHDQE-EALAMSDRIAVMNDGRIEQVGTPEEIY--------ERPATRFVADFIGE 239 (352)
T ss_pred hcCCeEEEEECCHH-HHhhhccceEEccCCceeecCCHHHHh--------hCcchHHHHHHhCc
Confidence 5 999999999987 799999999999999999999999872 33555555666543
No 19
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=2.7e-43 Score=338.86 Aligned_cols=190 Identities=35% Similarity=0.550 Sum_probs=171.9
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCc------ccccceeEEEccCCCCCCCCCHHHHHHHHHHccC
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLES------KLLKIISAYVMQDDLLFPMLTVEETLMFAAEFRL 74 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~------~~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~ 74 (592)
++||||||+|||||||.|.|+++|+ +|+|.++|+++.. ...++++|+++|+..||..|||+||+.|..+-.
T Consensus 37 ~~iiGgSGsGKStlLr~I~Gll~P~--~GeI~i~G~~i~~ls~~~~~~ir~r~GvlFQ~gALFssltV~eNVafplre~- 113 (263)
T COG1127 37 LAILGGSGSGKSTLLRLILGLLRPD--KGEILIDGEDIPQLSEEELYEIRKRMGVLFQQGALFSSLTVFENVAFPLREH- 113 (263)
T ss_pred EEEECCCCcCHHHHHHHHhccCCCC--CCeEEEcCcchhccCHHHHHHHHhheeEEeeccccccccchhHhhheehHhh-
Confidence 4899999999999999999999865 4999999998753 245678999999999999999999999976433
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCccc-ccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHH
Q 048028 75 PRSVTKTKKQERVEALINQLGLRSA-AKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVNV 153 (592)
Q Consensus 75 ~~~~~~~~~~~~v~~~l~~lgL~~~-~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~ 153 (592)
..++++..++.+..-|+.+||... + +.++.+||||||||++||||++.||+++++||||+||||.++..+.++
T Consensus 114 -~~lp~~~i~~lv~~KL~~VGL~~~~~-----~~~PsELSGGM~KRvaLARAialdPell~~DEPtsGLDPI~a~~~~~L 187 (263)
T COG1127 114 -TKLPESLIRELVLMKLELVGLRGAAA-----DLYPSELSGGMRKRVALARAIALDPELLFLDEPTSGLDPISAGVIDEL 187 (263)
T ss_pred -ccCCHHHHHHHHHHHHHhcCCChhhh-----hhCchhhcchHHHHHHHHHHHhcCCCEEEecCCCCCCCcchHHHHHHH
Confidence 357788889999999999999876 4 445678999999999999999999999999999999999999999999
Q ss_pred HHHHHHc-CCEEEEEecCChhHHHhhhceEEEecCCeEeeecChhhHH
Q 048028 154 LQRIAKS-GSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNETPSNLA 200 (592)
Q Consensus 154 l~~la~~-g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~~~~~ 200 (592)
++++.+. |.|++++|||.+ +++.+|||+++|.+|+++..|+++++.
T Consensus 188 I~~L~~~lg~T~i~VTHDl~-s~~~i~Drv~~L~~gkv~~~Gt~~el~ 234 (263)
T COG1127 188 IRELNDALGLTVIMVTHDLD-SLLTIADRVAVLADGKVIAEGTPEELL 234 (263)
T ss_pred HHHHHHhhCCEEEEEECChH-HHHhhhceEEEEeCCEEEEeCCHHHHH
Confidence 9999876 999999999998 699999999999999999999999874
No 20
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.2e-43 Score=343.01 Aligned_cols=175 Identities=33% Similarity=0.500 Sum_probs=158.4
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCcccccceeEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCH
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLESKLLKIISAYVMQDDLLFPMLTVEETLMFAAEFRLPRSVTK 80 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~ 80 (592)
++|+||||||||||||+|+|+.+|. +|+|.++|+++. .....++||+|++.++|-+||+||+.++...+. .++
T Consensus 32 vsilGpSGcGKSTLLriiAGL~~p~--~G~V~~~g~~v~--~p~~~~~~vFQ~~~LlPW~Tv~~NV~l~l~~~~---~~~ 104 (248)
T COG1116 32 VAILGPSGCGKSTLLRLIAGLEKPT--SGEVLLDGRPVT--GPGPDIGYVFQEDALLPWLTVLDNVALGLELRG---KSK 104 (248)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCCC--CceEEECCcccC--CCCCCEEEEeccCcccchhhHHhhheehhhccc---cch
Confidence 5899999999999999999998864 599999999983 345568999999999999999999999987652 566
Q ss_pred HHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH-
Q 048028 81 TKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVNVLQRIAK- 159 (592)
Q Consensus 81 ~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~la~- 159 (592)
++.+++++++|+.+||.+..| .++++|||||||||+|||||+.+|++|+||||+++||+.++.++.+.|.++.+
T Consensus 105 ~e~~~~a~~~L~~VgL~~~~~-----~~P~qLSGGMrQRVaiARAL~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~ 179 (248)
T COG1116 105 AEARERAKELLELVGLAGFED-----KYPHQLSGGMRQRVAIARALATRPKLLLLDEPFGALDALTREELQDELLRLWEE 179 (248)
T ss_pred HhHHHHHHHHHHHcCCcchhh-----cCccccChHHHHHHHHHHHHhcCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHh
Confidence 777889999999999999885 45678999999999999999999999999999999999999999999999876
Q ss_pred cCCEEEEEecCChhHHHhhhceEEEecCC
Q 048028 160 SGSIVIMSIHQPSYRILSLLDRLIILSHG 188 (592)
Q Consensus 160 ~g~tvi~~~H~~~~~i~~~~D~v~ll~~G 188 (592)
.++||+++|||.+ |+..++|||++|+++
T Consensus 180 ~~~TvllVTHdi~-EAv~LsdRivvl~~~ 207 (248)
T COG1116 180 TRKTVLLVTHDVD-EAVYLADRVVVLSNR 207 (248)
T ss_pred hCCEEEEEeCCHH-HHHhhhCEEEEecCC
Confidence 5899999999997 788999999999984
No 21
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=100.00 E-value=2.3e-43 Score=350.19 Aligned_cols=191 Identities=34% Similarity=0.473 Sum_probs=168.3
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCc---ccccceeEEEccCCCCCCCCCHHHHHHHHHHccCCC-
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLES---KLLKIISAYVMQDDLLFPMLTVEETLMFAAEFRLPR- 76 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~---~~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~~~- 76 (592)
++|+||||||||||||+|+|+++|. +|+|.++|+++.. +...+.++||||.......+||+|.+.++..-+...
T Consensus 31 ~~iiGpNG~GKSTLLk~l~g~l~p~--~G~V~l~g~~i~~~~~kelAk~ia~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~ 108 (258)
T COG1120 31 TGILGPNGSGKSTLLKCLAGLLKPK--SGEVLLDGKDIASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLF 108 (258)
T ss_pred EEEECCCCCCHHHHHHHHhccCCCC--CCEEEECCCchhhcCHHHHhhhEEEeccCCCCCCCcEEeehHhhcCCcccccc
Confidence 5899999999999999999999865 4999999998864 456678999999998889999999998874321111
Q ss_pred CCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHH
Q 048028 77 SVTKTKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVNVLQR 156 (592)
Q Consensus 77 ~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~ 156 (592)
....+++++.+++.|+.+|+.+.+++.+. .|||||||||.|||||+.+|++|+||||||.||...+.++++++++
T Consensus 109 ~~~~~~D~~~v~~aL~~~~~~~la~r~~~-----~LSGGerQrv~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~ 183 (258)
T COG1120 109 GRPSKEDEEIVEEALELLGLEHLADRPVD-----ELSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRD 183 (258)
T ss_pred cCCCHhHHHHHHHHHHHhCcHHHhcCccc-----ccChhHHHHHHHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHH
Confidence 12244556689999999999999987765 5999999999999999999999999999999999999999999999
Q ss_pred HHH-cCCEEEEEecCChhHHHhhhceEEEecCCeEeeecChhhH
Q 048028 157 IAK-SGSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNETPSNL 199 (592)
Q Consensus 157 la~-~g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~~~~ 199 (592)
+++ +|+|||+++||++ .+.++||++++|++|+++..|+|+++
T Consensus 184 l~~~~~~tvv~vlHDlN-~A~ryad~~i~lk~G~i~a~G~p~ev 226 (258)
T COG1120 184 LNREKGLTVVMVLHDLN-LAARYADHLILLKDGKIVAQGTPEEV 226 (258)
T ss_pred HHHhcCCEEEEEecCHH-HHHHhCCEEEEEECCeEEeecCcchh
Confidence 996 5999999999998 58999999999999999999999876
No 22
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=100.00 E-value=4.7e-43 Score=322.71 Aligned_cols=188 Identities=29% Similarity=0.481 Sum_probs=167.3
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCcc-cccceeEEEccCCCCCCCCCHHHHHHHHHHccCCCCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLESK-LLKIISAYVMQDDLLFPMLTVEETLMFAAEFRLPRSVT 79 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~~-~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~ 79 (592)
+||+||||||||||||.|+|...|. +|+|.+||++.+.. ...|=++.++|+.++|.+|||.+|+.++.. |.-.-
T Consensus 28 vAi~GpSGaGKSTLLnLIAGF~~P~--~G~i~i~g~d~t~~~P~~RPVSmlFQEnNLFaHLtV~qNigLGl~---P~LkL 102 (231)
T COG3840 28 VAILGPSGAGKSTLLNLIAGFETPA--SGEILINGVDHTASPPAERPVSMLFQENNLFAHLTVAQNIGLGLS---PGLKL 102 (231)
T ss_pred EEEECCCCccHHHHHHHHHhccCCC--CceEEEcCeecCcCCcccCChhhhhhccccchhhhhhhhhcccCC---ccccc
Confidence 5899999999999999999998764 59999999998754 345558999999999999999999988743 22222
Q ss_pred HHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Q 048028 80 KTKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVNVLQRIAK 159 (592)
Q Consensus 80 ~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~la~ 159 (592)
..+.+++++.++..+||..+.+.+.+ +|||||||||++||+|+.+-+||+||||+|.|||.-+.++..++.++++
T Consensus 103 ~a~~r~~v~~aa~~vGl~~~~~RLP~-----~LSGGqRQRvALARclvR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~ 177 (231)
T COG3840 103 NAEQREKVEAAAAQVGLAGFLKRLPG-----ELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRAEMLALVSQLCD 177 (231)
T ss_pred CHHHHHHHHHHHHHhChhhHhhhCcc-----ccCchHHHHHHHHHHHhccCCeEEecCchhhcCHHHHHHHHHHHHHHHH
Confidence 35667889999999999999877655 5999999999999999999999999999999999999999999999987
Q ss_pred -cCCEEEEEecCChhHHHhhhceEEEecCCeEeeecChhhH
Q 048028 160 -SGSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNETPSNL 199 (592)
Q Consensus 160 -~g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~~~~ 199 (592)
++.|++++||+|+ ++..+.|+++++++||+.+.|+.++.
T Consensus 178 E~~~TllmVTH~~~-Da~~ia~~~~fl~~Gri~~~g~~~~~ 217 (231)
T COG3840 178 ERKMTLLMVTHHPE-DAARIADRVVFLDNGRIAAQGSTQEL 217 (231)
T ss_pred hhCCEEEEEeCCHH-HHHHhhhceEEEeCCEEEeeccHHHH
Confidence 4899999999998 69999999999999999999998765
No 23
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2e-42 Score=341.83 Aligned_cols=190 Identities=26% Similarity=0.514 Sum_probs=164.6
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCcccccceeEEEccCC---CCCCCCCHHHHHHHHHHccCCC-
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLESKLLKIISAYVMQDD---LLFPMLTVEETLMFAAEFRLPR- 76 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~~~~~~~~~yv~Q~~---~l~~~lTV~E~l~f~~~l~~~~- 76 (592)
++|+||||||||||+|+|.|+++|. +|+|.++|++......+.++|||||.. .-|| +||+|.+..+..-+...
T Consensus 33 ~~iiGPNGaGKSTLlK~iLGll~p~--~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP-~tV~d~V~~g~~~~~g~~ 109 (254)
T COG1121 33 TALIGPNGAGKSTLLKAILGLLKPS--SGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFP-ITVKDVVLLGRYGKKGWF 109 (254)
T ss_pred EEEECCCCCCHHHHHHHHhCCCcCC--cceEEEccccccccccCCeEEEcCcccccCCCCC-cCHHHHHHccCccccccc
Confidence 5899999999999999999998864 599999999887655567899999954 3455 69999998874333211
Q ss_pred CCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHH
Q 048028 77 SVTKTKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVNVLQR 156 (592)
Q Consensus 77 ~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~ 156 (592)
....++++++++++|+++|+.+.+|..+|+ |||||+|||.|||||+++|++|+|||||+|+|+.++..++++|++
T Consensus 110 ~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~-----LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~ 184 (254)
T COG1121 110 RRLNKKDKEKVDEALERVGMEDLRDRQIGE-----LSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKE 184 (254)
T ss_pred ccccHHHHHHHHHHHHHcCchhhhCCcccc-----cCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHH
Confidence 112344578999999999999999998886 999999999999999999999999999999999999999999999
Q ss_pred HHHcCCEEEEEecCChhHHHhhhceEEEecCCeEeeecChhhHH
Q 048028 157 IAKSGSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNETPSNLA 200 (592)
Q Consensus 157 la~~g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~~~~~ 200 (592)
++++|+||++++||++ .+.+.||+|+.|+ +++++.|+++++.
T Consensus 185 l~~eg~tIl~vtHDL~-~v~~~~D~vi~Ln-~~~~~~G~~~~~~ 226 (254)
T COG1121 185 LRQEGKTVLMVTHDLG-LVMAYFDRVICLN-RHLIASGPPEEVL 226 (254)
T ss_pred HHHCCCEEEEEeCCcH-HhHhhCCEEEEEc-CeeEeccChhhcc
Confidence 9999999999999998 5999999999995 6788899998763
No 24
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.6e-42 Score=330.26 Aligned_cols=194 Identities=28% Similarity=0.451 Sum_probs=169.6
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCc------ccccceeEEEccCCCCCCCCCHHHHHHHHHHccC
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLES------KLLKIISAYVMQDDLLFPMLTVEETLMFAAEFRL 74 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~------~~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~ 74 (592)
+||+||||||||||||+|.|+.++ .+|+|.+||.++.. +.+|+.+||++|+..|.+.+||.||+..+..-+.
T Consensus 33 VaiIG~SGaGKSTLLR~lngl~d~--t~G~i~~~g~~i~~~~~k~lr~~r~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~ 110 (258)
T COG3638 33 VAIIGPSGAGKSTLLRSLNGLVDP--TSGEILFNGVQITKLKGKELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYT 110 (258)
T ss_pred EEEECCCCCcHHHHHHHHhcccCC--CcceEEecccchhccchHHHHHHHHhceeEeccCCcccccHHHHHHHhhhcccc
Confidence 589999999999999999998775 45999999987753 2457789999999999999999999987643322
Q ss_pred C-----CCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHH
Q 048028 75 P-----RSVTKTKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFM 149 (592)
Q Consensus 75 ~-----~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~ 149 (592)
+ -.+..++.++++-+.|+++|+.+.+.++.++ |||||+|||+|||+|+.+|+++|.|||+++|||.++++
T Consensus 111 s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra~~-----LSGGQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~ 185 (258)
T COG3638 111 STWRSLFGLFSKEDKAQALDALERVGILDKAYQRAST-----LSGGQQQRVAIARALVQQPKIILADEPVASLDPESAKK 185 (258)
T ss_pred hHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHhcc-----CCcchhHHHHHHHHHhcCCCEEecCCcccccChhhHHH
Confidence 2 1233455667888999999999998877664 99999999999999999999999999999999999999
Q ss_pred HHHHHHHHHH-cCCEEEEEecCChhHHHhhhceEEEecCCeEeeecChhhHHHH
Q 048028 150 VVNVLQRIAK-SGSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNETPSNLAQF 202 (592)
Q Consensus 150 i~~~l~~la~-~g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~~~~~~~ 202 (592)
+|+.|+++++ +|.|||++.||.+ -+.++|||++-|++|+++|+||++++.+.
T Consensus 186 Vm~~l~~in~~~g~Tvi~nLH~vd-lA~~Y~~Riigl~~G~ivfDg~~~el~~~ 238 (258)
T COG3638 186 VMDILKDINQEDGITVIVNLHQVD-LAKKYADRIIGLKAGRIVFDGPASELTDE 238 (258)
T ss_pred HHHHHHHHHHHcCCEEEEEechHH-HHHHHHhhheEecCCcEEEeCChhhhhHH
Confidence 9999999987 5999999999998 48899999999999999999999887543
No 25
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=100.00 E-value=2.3e-41 Score=351.22 Aligned_cols=190 Identities=29% Similarity=0.485 Sum_probs=169.7
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCc--ccccceeEEEccCCCCCCCCCHHHHHHHHHHccCCCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLES--KLLKIISAYVMQDDLLFPMLTVEETLMFAAEFRLPRSV 78 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~--~~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~~~~~ 78 (592)
++|+||||||||||+++|+|+.+|. +|+|.++|.++.. ...++.+||++|++.+++.+||+||+.|.+.++ ..
T Consensus 36 ~gllGpNGaGKSTLl~~l~Gl~~p~--~G~v~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~---~~ 110 (306)
T PRK13537 36 FGLLGPNGAGKTTTLRMLLGLTHPD--AGSISLCGEPVPSRARHARQRVGVVPQFDNLDPDFTVRENLLVFGRYF---GL 110 (306)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCCC--ceEEEECCEecccchHHHHhcEEEEeccCcCCCCCcHHHHHHHHHHHc---CC
Confidence 4899999999999999999998854 5999999998754 235677999999999999999999999876653 23
Q ss_pred CHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 048028 79 TKTKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVNVLQRIA 158 (592)
Q Consensus 79 ~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~la 158 (592)
+..+.+++++++++.++|.+..++.++ +|||||||||+||+||+++|++|+|||||+|||+.++..+.+.|++++
T Consensus 111 ~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrl~la~aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~ 185 (306)
T PRK13537 111 SAAAARALVPPLLEFAKLENKADAKVG-----ELSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLL 185 (306)
T ss_pred CHHHHHHHHHHHHHHcCCchHhcCchh-----hCCHHHHHHHHHHHHHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHH
Confidence 445556788999999999988877765 599999999999999999999999999999999999999999999998
Q ss_pred HcCCEEEEEecCChhHHHhhhceEEEecCCeEeeecChhhHHH
Q 048028 159 KSGSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNETPSNLAQ 201 (592)
Q Consensus 159 ~~g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~~~~~~ 201 (592)
++|+|||++||+++ ++.++|||+++|++|++++.|+++++.+
T Consensus 186 ~~g~till~sH~l~-e~~~~~d~i~il~~G~i~~~g~~~~l~~ 227 (306)
T PRK13537 186 ARGKTILLTTHFME-EAERLCDRLCVIEEGRKIAEGAPHALIE 227 (306)
T ss_pred hCCCEEEEECCCHH-HHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 88999999999997 6899999999999999999999988754
No 26
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.6e-41 Score=356.90 Aligned_cols=189 Identities=27% Similarity=0.463 Sum_probs=168.9
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCcc-cccceeEEEccCCCCCCCCCHHHHHHHHHHccCCCCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLESK-LLKIISAYVMQDDLLFPMLTVEETLMFAAEFRLPRSVT 79 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~~-~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~ 79 (592)
++|+|||||||||||++|+|+.++ .+|+|.++|+++... ..++.+|||+|+..+||++||+||+.|+.+.+ ..+
T Consensus 33 ~~llG~sGsGKSTLLr~iaGl~~p--~~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~---~~~ 107 (356)
T PRK11650 33 IVLVGPSGCGKSTLLRMVAGLERI--TSGEIWIGGRVVNELEPADRDIAMVFQNYALYPHMSVRENMAYGLKIR---GMP 107 (356)
T ss_pred EEEECCCCCcHHHHHHHHHCCCCC--CceEEEECCEECCCCCHHHCCEEEEeCCccccCCCCHHHHHHhHHhhc---CCC
Confidence 489999999999999999999875 459999999988542 23467999999999999999999999987543 245
Q ss_pred HHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Q 048028 80 KTKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVNVLQRIAK 159 (592)
Q Consensus 80 ~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~la~ 159 (592)
+.+.+++++++++.+||++..++++ ++|||||||||+|||||+.+|++|||||||++||+.++..+.+.|+++.+
T Consensus 108 ~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LSgGq~QRvalARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~ 182 (356)
T PRK11650 108 KAEIEERVAEAARILELEPLLDRKP-----RELSGGQRQRVAMGRAIVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHR 182 (356)
T ss_pred HHHHHHHHHHHHHHcCChhHhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH
Confidence 5666788999999999998876655 56999999999999999999999999999999999999999999999987
Q ss_pred c-CCEEEEEecCChhHHHhhhceEEEecCCeEeeecChhhHH
Q 048028 160 S-GSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNETPSNLA 200 (592)
Q Consensus 160 ~-g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~~~~~ 200 (592)
+ |.|+|++|||+. ++.+++|++++|++|+++..|+++++.
T Consensus 183 ~~g~tii~vTHd~~-ea~~l~D~i~vl~~G~i~~~g~~~~~~ 223 (356)
T PRK11650 183 RLKTTSLYVTHDQV-EAMTLADRVVVMNGGVAEQIGTPVEVY 223 (356)
T ss_pred hcCCEEEEEeCCHH-HHHHhCCEEEEEeCCEEEEECCHHHHH
Confidence 5 899999999997 699999999999999999999998873
No 27
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=7.9e-42 Score=322.58 Aligned_cols=204 Identities=22% Similarity=0.381 Sum_probs=174.7
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCC---CCceeEEEECCEecCc-----ccccceeEEEccCCCCCCCCCHHHHHHHHHHc
Q 048028 1 MAILGASGAGKTTLMDALAGRIEK---ESLQGAVTLNGEVLES-----KLLKIISAYVMQDDLLFPMLTVEETLMFAAEF 72 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~---~~~~G~I~i~g~~~~~-----~~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l 72 (592)
+|+|||||||||||||++...... ...+|+|.++|+++.. ..+|+.+|+|+|.+.-|| +|++||+.|+.++
T Consensus 36 TAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~~~lRr~vGMVFQkPnPFp-~SIydNVayG~r~ 114 (253)
T COG1117 36 TALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDVVELRRRVGMVFQKPNPFP-MSIYDNVAYGLRL 114 (253)
T ss_pred EEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCHHHHHHHheeeccCCCCCC-chHHHHHHHhHHh
Confidence 589999999999999999887552 3468999999998754 357888999999999999 8999999999887
Q ss_pred cCCCCCCHHHHHHHHHHHHHHcCCcc-cccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHH
Q 048028 73 RLPRSVTKTKKQERVEALINQLGLRS-AAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVV 151 (592)
Q Consensus 73 ~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~ 151 (592)
... .+++.++.|+..|+...|.+ +.|.+ ++...+|||||+||++|||+|+.+|+|||||||||+|||.+..+|-
T Consensus 115 ~g~---~~~~ldeiVe~sLk~AaLWdEVKDrL--~~sa~~LSGGQQQRLcIARalAv~PeVlLmDEPtSALDPIsT~kIE 189 (253)
T COG1117 115 HGI---KDKELDEIVESSLKKAALWDEVKDRL--HKSALGLSGGQQQRLCIARALAVKPEVLLMDEPTSALDPISTLKIE 189 (253)
T ss_pred hcc---chHHHHHHHHHHHHHhHhHHHhHHHh--hCCccCCChhHHHHHHHHHHHhcCCcEEEecCcccccCchhHHHHH
Confidence 632 23677889999999999954 44443 4566789999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCEEEEEecCChhHHHhhhceEEEecCCeEeeecChhhHHHHHHHcCCCCCCCCChHHHH
Q 048028 152 NVLQRIAKSGSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNETPSNLAQFFAEFGHPVPENENKIEFA 220 (592)
Q Consensus 152 ~~l~~la~~g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~~~~~~~f~~~g~~~p~~~n~~d~~ 220 (592)
+++.+|++ .-|||++||.+. ++.+..|+..++..|+++++|+.+++ +.-|.+..+.||+
T Consensus 190 eLi~eLk~-~yTIviVTHnmq-QAaRvSD~taFf~~G~LvE~g~T~~i--------F~~P~~~~TedYi 248 (253)
T COG1117 190 ELITELKK-KYTIVIVTHNMQ-QAARVSDYTAFFYLGELVEFGPTDKI--------FTNPKHKRTEDYI 248 (253)
T ss_pred HHHHHHHh-ccEEEEEeCCHH-HHHHHhHhhhhhcccEEEEEcCHHhh--------hcCccHHHHHHHh
Confidence 99999984 689999999997 79999999999999999999999876 2345555555554
No 28
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=100.00 E-value=4.4e-41 Score=354.82 Aligned_cols=189 Identities=30% Similarity=0.499 Sum_probs=169.4
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCcc-cccceeEEEccCCCCCCCCCHHHHHHHHHHccCCCCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLESK-LLKIISAYVMQDDLLFPMLTVEETLMFAAEFRLPRSVT 79 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~~-~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~ 79 (592)
++|+|||||||||||++|+|+.++. +|+|.++|+++... ..++.+|||+|+..+||++||+||+.|+.+.+ ..+
T Consensus 33 ~~l~GpsGsGKSTLLr~iaGl~~p~--~G~I~i~g~~~~~~~~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~---~~~ 107 (353)
T TIGR03265 33 VCLLGPSGCGKTTLLRIIAGLERQT--AGTIYQGGRDITRLPPQKRDYGIVFQSYALFPNLTVADNIAYGLKNR---GMG 107 (353)
T ss_pred EEEECCCCCCHHHHHHHHHCCCCCC--ceEEEECCEECCCCCHHHCCEEEEeCCcccCCCCcHHHHHHHHHHhc---CCC
Confidence 4899999999999999999998754 59999999988642 24567999999999999999999999987643 345
Q ss_pred HHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Q 048028 80 KTKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVNVLQRIAK 159 (592)
Q Consensus 80 ~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~la~ 159 (592)
+.+.+++++++++.+||++..|+. +++|||||||||+|||||+.+|+++||||||++||+.++.++.+.|+++.+
T Consensus 108 ~~~~~~~~~~~l~~l~L~~~~~~~-----~~~LSgGq~QRvaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~ 182 (353)
T TIGR03265 108 RAEVAERVAELLDLVGLPGSERKY-----PGQLSGGQQQRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQR 182 (353)
T ss_pred HHHHHHHHHHHHHHcCCCchhhCC-----hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH
Confidence 667778999999999999887655 456999999999999999999999999999999999999999999999987
Q ss_pred c-CCEEEEEecCChhHHHhhhceEEEecCCeEeeecChhhHH
Q 048028 160 S-GSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNETPSNLA 200 (592)
Q Consensus 160 ~-g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~~~~~ 200 (592)
+ |.|+|++||+++ ++..++||+++|++|++++.|+++++.
T Consensus 183 ~~~~tvi~vTHd~~-ea~~l~d~i~vl~~G~i~~~g~~~~~~ 223 (353)
T TIGR03265 183 RLGVTTIMVTHDQE-EALSMADRIVVMNHGVIEQVGTPQEIY 223 (353)
T ss_pred hcCCEEEEEcCCHH-HHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 5 899999999997 799999999999999999999998874
No 29
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=100.00 E-value=6.1e-41 Score=347.88 Aligned_cols=190 Identities=30% Similarity=0.469 Sum_probs=168.5
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCc--ccccceeEEEccCCCCCCCCCHHHHHHHHHHccCCCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLES--KLLKIISAYVMQDDLLFPMLTVEETLMFAAEFRLPRSV 78 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~--~~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~~~~~ 78 (592)
++|+||||||||||+|+|+|+++|. +|+|.++|+++.. ...++.+||++|++.+++.+||+||+.+.++++ ..
T Consensus 22 ~~l~G~NGaGKSTLl~~l~Gl~~p~--~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~ 96 (302)
T TIGR01188 22 FGFLGPNGAGKTTTIRMLTTLLRPT--SGTARVAGYDVVREPRKVRRSIGIVPQYASVDEDLTGRENLEMMGRLY---GL 96 (302)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCCC--ceEEEECCEEcccCHHHHHhhcEEecCCCCCCCCCcHHHHHHHHHHHc---CC
Confidence 4899999999999999999998754 5999999998753 234567899999999999999999999876654 23
Q ss_pred CHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 048028 79 TKTKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVNVLQRIA 158 (592)
Q Consensus 79 ~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~la 158 (592)
+..+.+++++++++.+||.+..++.++ .|||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|++++
T Consensus 97 ~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~ 171 (302)
T TIGR01188 97 PKDEAEERAEELLELFELGEAADRPVG-----TYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALK 171 (302)
T ss_pred CHHHHHHHHHHHHHHcCChhHhCCchh-----hCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHH
Confidence 445556789999999999987776654 599999999999999999999999999999999999999999999998
Q ss_pred HcCCEEEEEecCChhHHHhhhceEEEecCCeEeeecChhhHHH
Q 048028 159 KSGSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNETPSNLAQ 201 (592)
Q Consensus 159 ~~g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~~~~~~ 201 (592)
++|+|||+++|+++ ++.++||++++|++|++++.|+++++.+
T Consensus 172 ~~g~tvi~~sH~~~-~~~~~~d~v~~l~~G~i~~~g~~~~l~~ 213 (302)
T TIGR01188 172 EEGVTILLTTHYME-EADKLCDRIAIIDHGRIIAEGTPEELKR 213 (302)
T ss_pred hCCCEEEEECCCHH-HHHHhCCEEEEEECCEEEEECCHHHHHH
Confidence 88999999999997 6889999999999999999999988754
No 30
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=100.00 E-value=6.8e-41 Score=354.00 Aligned_cols=191 Identities=29% Similarity=0.445 Sum_probs=169.2
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCcc-cccceeEEEccCCCCCCCCCHHHHHHHHHHccCCCCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLESK-LLKIISAYVMQDDLLFPMLTVEETLMFAAEFRLPRSVT 79 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~~-~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~ 79 (592)
++|+|||||||||||++|+|+.++...+|+|.++|+++... ..++.++||+|+..+||++||+||+.|+.+.+ ..+
T Consensus 34 ~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~~~r~ig~vfQ~~~l~p~~tv~enl~~~l~~~---~~~ 110 (362)
T TIGR03258 34 LALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPHKRGLALLFQNYALFPHLKVEDNVAFGLRAQ---KMP 110 (362)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCHHHCCEEEEECCcccCCCCcHHHHHHHHHHHc---CCC
Confidence 48999999999999999999987532239999999987542 23567899999999999999999999987643 245
Q ss_pred HHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Q 048028 80 KTKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVNVLQRIAK 159 (592)
Q Consensus 80 ~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~la~ 159 (592)
+.+.+++++++++.+||++..|+.+ ++|||||||||+|||||+.+|++|||||||+|||+..+.++.+.|+++.+
T Consensus 111 ~~~~~~~v~~~l~~~gL~~~~~~~~-----~~LSgGq~QRvaLARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~ 185 (362)
T TIGR03258 111 KADIAERVADALKLVGLGDAAAHLP-----AQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHE 185 (362)
T ss_pred HHHHHHHHHHHHHhcCCCchhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHH
Confidence 5667788999999999998887655 56999999999999999999999999999999999999999999999987
Q ss_pred c--CCEEEEEecCChhHHHhhhceEEEecCCeEeeecChhhHH
Q 048028 160 S--GSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNETPSNLA 200 (592)
Q Consensus 160 ~--g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~~~~~ 200 (592)
+ |.|+|++||+++ ++..++||+++|++|+++..|+++++.
T Consensus 186 ~~~g~til~vTHd~~-ea~~l~dri~vl~~G~i~~~g~~~~~~ 227 (362)
T TIGR03258 186 ELPELTILCVTHDQD-DALTLADKAGIMKDGRLAAHGEPQALY 227 (362)
T ss_pred hCCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 6 799999999997 689999999999999999999998874
No 31
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.9e-41 Score=352.39 Aligned_cols=189 Identities=24% Similarity=0.445 Sum_probs=169.3
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCccc-ccceeEEEccCCCCCCCCCHHHHHHHHHHccCCCCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLESKL-LKIISAYVMQDDLLFPMLTVEETLMFAAEFRLPRSVT 79 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~~~-~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~ 79 (592)
++|+|||||||||||++|+|+.++. +|+|.++|+++.... .++.++||+|+..+||++||+||+.|+.+.+ ..+
T Consensus 35 ~~llGpsGsGKSTLLr~IaGl~~p~--~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~~tv~eNi~~~l~~~---~~~ 109 (351)
T PRK11432 35 VTLLGPSGCGKTTVLRLVAGLEKPT--EGQIFIDGEDVTHRSIQQRDICMVFQSYALFPHMSLGENVGYGLKML---GVP 109 (351)
T ss_pred EEEECCCCCcHHHHHHHHHCCCCCC--ceEEEECCEECCCCCHHHCCEEEEeCCcccCCCCCHHHHHHHHHhHc---CCC
Confidence 4899999999999999999998854 599999999886432 3467999999999999999999999987654 245
Q ss_pred HHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Q 048028 80 KTKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVNVLQRIAK 159 (592)
Q Consensus 80 ~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~la~ 159 (592)
+.+.+++++++++.+||.+..++. ++.|||||||||+|||||+.+|++|||||||+|||+..+.++.+.|+++.+
T Consensus 110 ~~~~~~~v~~~l~~~gl~~~~~r~-----~~~LSgGq~QRVaLARaL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~ 184 (351)
T PRK11432 110 KEERKQRVKEALELVDLAGFEDRY-----VDQISGGQQQRVALARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQ 184 (351)
T ss_pred HHHHHHHHHHHHHHcCCchhhcCC-----hhhCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH
Confidence 667778999999999999877655 456999999999999999999999999999999999999999999999987
Q ss_pred c-CCEEEEEecCChhHHHhhhceEEEecCCeEeeecChhhHH
Q 048028 160 S-GSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNETPSNLA 200 (592)
Q Consensus 160 ~-g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~~~~~ 200 (592)
+ |+|+|++||+++ ++.+++||+++|++|+++..|+++++.
T Consensus 185 ~~g~tii~vTHd~~-e~~~laD~i~vm~~G~i~~~g~~~~~~ 225 (351)
T PRK11432 185 QFNITSLYVTHDQS-EAFAVSDTVIVMNKGKIMQIGSPQELY 225 (351)
T ss_pred hcCCEEEEEcCCHH-HHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 5 899999999997 689999999999999999999998873
No 32
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=100.00 E-value=8.6e-41 Score=350.52 Aligned_cols=188 Identities=24% Similarity=0.413 Sum_probs=167.6
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCcc------cccceeEEEccCCCCCCCCCHHHHHHHHHHccC
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLESK------LLKIISAYVMQDDLLFPMLTVEETLMFAAEFRL 74 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~~------~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~ 74 (592)
++|+||||||||||+|+|+|+.+|. +|+|.++|+++... ..++.+||++|+..+++.+||+||+.+.....
T Consensus 34 ~gIiG~sGaGKSTLlr~I~gl~~p~--~G~I~i~G~~i~~~~~~~l~~~r~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~- 110 (343)
T TIGR02314 34 YGVIGASGAGKSTLIRCVNLLERPT--SGSVIVDGQDLTTLSNSELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELD- 110 (343)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCCC--ceEEEECCEECCcCCHHHHHHHhcCEEEEECCccccccCcHHHHHHHHHHHc-
Confidence 4899999999999999999998854 59999999988542 23567999999999999999999999876543
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHH
Q 048028 75 PRSVTKTKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVNVL 154 (592)
Q Consensus 75 ~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l 154 (592)
..++++.++++.++++.+||.+..|..+ ++|||||||||+|||||+.+|++|+|||||++||+.++..++++|
T Consensus 111 --~~~~~~~~~~v~e~l~~vgL~~~~~~~~-----~~LSgGqkQRV~IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL 183 (343)
T TIGR02314 111 --NTPKDEIKRKVTELLALVGLGDKHDSYP-----SNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELL 183 (343)
T ss_pred --CCCHHHHHHHHHHHHHHcCCchhhhCCh-----hhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence 2455667788999999999998776554 569999999999999999999999999999999999999999999
Q ss_pred HHHHHc-CCEEEEEecCChhHHHhhhceEEEecCCeEeeecChhhH
Q 048028 155 QRIAKS-GSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNETPSNL 199 (592)
Q Consensus 155 ~~la~~-g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~~~~ 199 (592)
++++++ |.|||++||+++ .+.++||++++|++|+++..|+++++
T Consensus 184 ~~l~~~~g~tiiliTH~~~-~v~~~~d~v~vl~~G~iv~~g~~~~v 228 (343)
T TIGR02314 184 KEINRRLGLTILLITHEMD-VVKRICDCVAVISNGELIEQGTVSEI 228 (343)
T ss_pred HHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 999875 999999999997 68899999999999999999998876
No 33
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.5e-40 Score=332.91 Aligned_cols=189 Identities=31% Similarity=0.516 Sum_probs=164.2
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCc------ccccceeEEEccCCCCCCCCCHHHHHHHHHHccC
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLES------KLLKIISAYVMQDDLLFPMLTVEETLMFAAEFRL 74 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~------~~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~ 74 (592)
++|+||||||||||+|+|+|+.+|. +|+|.++|+++.. ...++.++|++|++.+++.+||+||+.+......
T Consensus 29 ~~l~G~nGsGKSTLl~~l~G~~~p~--~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~ 106 (235)
T cd03261 29 LAIIGPSGSGKSTLLRLIVGLLRPD--SGEVLIDGEDISGLSEAELYRLRRRMGMLFQSGALFDSLTVFENVAFPLREHT 106 (235)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCCC--ceEEEECCEEccccChhhHHHHhcceEEEccCcccCCCCcHHHHHHHHHhhcc
Confidence 5899999999999999999998754 5999999998753 2345678999999999999999999988754321
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHH
Q 048028 75 PRSVTKTKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVNVL 154 (592)
Q Consensus 75 ~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l 154 (592)
..++++.+++++++++.+||.+..++.+ +.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|
T Consensus 107 --~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~l~~~l 179 (235)
T cd03261 107 --RLSEEEIREIVLEKLEAVGLRGAEDLYP-----AELSGGMKKRVALARALALDPELLLYDEPTAGLDPIASGVIDDLI 179 (235)
T ss_pred --CCCHHHHHHHHHHHHHHcCCchhhcCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHH
Confidence 2344555678899999999987776655 469999999999999999999999999999999999999999999
Q ss_pred HHHHHc-CCEEEEEecCChhHHHhhhceEEEecCCeEeeecChhhH
Q 048028 155 QRIAKS-GSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNETPSNL 199 (592)
Q Consensus 155 ~~la~~-g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~~~~ 199 (592)
++++++ |+|||+++|+++ ++.++||++++|++|++++.|+++++
T Consensus 180 ~~~~~~~~~tvi~vsH~~~-~~~~~~d~v~~l~~G~i~~~g~~~~~ 224 (235)
T cd03261 180 RSLKKELGLTSIMVTHDLD-TAFAIADRIAVLYDGKIVAEGTPEEL 224 (235)
T ss_pred HHHHHhcCcEEEEEecCHH-HHHHhcCEEEEEECCeEEEecCHHHH
Confidence 999874 899999999997 68889999999999999999988765
No 34
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=100.00 E-value=1.7e-40 Score=352.25 Aligned_cols=189 Identities=26% Similarity=0.425 Sum_probs=168.4
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCcc-cccceeEEEccCCCCCCCCCHHHHHHHHHHccCCCCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLESK-LLKIISAYVMQDDLLFPMLTVEETLMFAAEFRLPRSVT 79 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~~-~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~ 79 (592)
++|+|||||||||||++|+|+.++ .+|+|.++|+++... ..++.++||+|+..+||++||+||+.|+.+.+ ..+
T Consensus 43 ~~LlGpsGsGKSTLLr~IaGl~~p--~~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~---~~~ 117 (375)
T PRK09452 43 LTLLGPSGCGKTTVLRLIAGFETP--DSGRIMLDGQDITHVPAENRHVNTVFQSYALFPHMTVFENVAFGLRMQ---KTP 117 (375)
T ss_pred EEEECCCCCcHHHHHHHHhCCCCC--CceEEEECCEECCCCCHHHCCEEEEecCcccCCCCCHHHHHHHHHhhc---CCC
Confidence 489999999999999999999875 459999999988542 23567899999999999999999999986543 235
Q ss_pred HHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Q 048028 80 KTKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVNVLQRIAK 159 (592)
Q Consensus 80 ~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~la~ 159 (592)
+.+.+++++++++.+||++..++++ .+|||||||||+|||+|+.+|++|||||||+|||...+..+.+.|+++.+
T Consensus 118 ~~~~~~~~~~~l~~~~l~~~~~~~p-----~~LSgGq~QRVaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~ 192 (375)
T PRK09452 118 AAEITPRVMEALRMVQLEEFAQRKP-----HQLSGGQQQRVAIARAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQR 192 (375)
T ss_pred HHHHHHHHHHHHHHcCCchhhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHH
Confidence 5566778999999999998876654 56999999999999999999999999999999999999999999999987
Q ss_pred c-CCEEEEEecCChhHHHhhhceEEEecCCeEeeecChhhHH
Q 048028 160 S-GSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNETPSNLA 200 (592)
Q Consensus 160 ~-g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~~~~~ 200 (592)
+ |.|+|++||++. ++..++||+++|++|+++..|+++++.
T Consensus 193 ~~g~tiI~vTHd~~-ea~~laDri~vl~~G~i~~~g~~~~i~ 233 (375)
T PRK09452 193 KLGITFVFVTHDQE-EALTMSDRIVVMRDGRIEQDGTPREIY 233 (375)
T ss_pred hcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 5 899999999997 689999999999999999999998873
No 35
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=100.00 E-value=2.9e-40 Score=348.44 Aligned_cols=189 Identities=24% Similarity=0.421 Sum_probs=168.3
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCcc---cc----cceeEEEccCCCCCCCCCHHHHHHHHHHcc
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLESK---LL----KIISAYVMQDDLLFPMLTVEETLMFAAEFR 73 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~~---~~----~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~ 73 (592)
++|+|||||||||||++|+|+.+| .+|+|.++|+++... .. ++.++||+|+..++|++||+||+.|...+.
T Consensus 22 ~~l~G~sGsGKSTLLr~L~Gl~~p--~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~~~~TV~eNi~~~~~~~ 99 (363)
T TIGR01186 22 FVIMGLSGSGKSTTVRMLNRLIEP--TAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALFPHMTILQNTSLGPELL 99 (363)
T ss_pred EEEECCCCChHHHHHHHHhCCCCC--CceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCCCCCCHHHHHHHHHHHc
Confidence 489999999999999999999885 459999999988642 22 567999999999999999999999987653
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHH
Q 048028 74 LPRSVTKTKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVNV 153 (592)
Q Consensus 74 ~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~ 153 (592)
..++++..+++.++++.+||++..++.+ ..|||||||||+|||||+.+|++|||||||+|||+.++..+.+.
T Consensus 100 ---~~~~~~~~~~~~~~l~~vgL~~~~~~~p-----~~LSGGq~QRV~lARAL~~~p~iLLlDEP~saLD~~~r~~l~~~ 171 (363)
T TIGR01186 100 ---GWPEQERKEKALELLKLVGLEEYEHRYP-----DELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDE 171 (363)
T ss_pred ---CCCHHHHHHHHHHHHHhcCCchhhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHH
Confidence 2455667788999999999988776654 46999999999999999999999999999999999999999999
Q ss_pred HHHHHHc-CCEEEEEecCChhHHHhhhceEEEecCCeEeeecChhhHH
Q 048028 154 LQRIAKS-GSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNETPSNLA 200 (592)
Q Consensus 154 l~~la~~-g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~~~~~ 200 (592)
++++.++ |+|||++||+++ ++.+++||+++|++|+++..|+++++.
T Consensus 172 l~~l~~~~~~Tii~vTHd~~-ea~~~~drI~vl~~G~iv~~g~~~ei~ 218 (363)
T TIGR01186 172 LKKLQATLQKTIVFITHDLD-EAIRIGDRIVIMKAGEIVQVGTPDEIL 218 (363)
T ss_pred HHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeCCEEEeeCCHHHHH
Confidence 9999765 899999999997 688999999999999999999998864
No 36
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=100.00 E-value=2.9e-40 Score=348.56 Aligned_cols=192 Identities=24% Similarity=0.402 Sum_probs=168.3
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCcc-cccceeEEEccCCCCCCCCCHHHHHHHHHHccCC-CCC
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLESK-LLKIISAYVMQDDLLFPMLTVEETLMFAAEFRLP-RSV 78 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~~-~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~~-~~~ 78 (592)
++|+||||||||||||+|+|+.++. +|+|.++|+++... ..++.++||+|+..++|++||+||+.|..+.+.. ...
T Consensus 31 ~~llGpsGsGKSTLLr~IaGl~~p~--~G~I~i~g~~i~~~~~~~r~i~~v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~ 108 (353)
T PRK10851 31 VALLGPSGSGKTTLLRIIAGLEHQT--SGHIRFHGTDVSRLHARDRKVGFVFQHYALFRHMTVFDNIAFGLTVLPRRERP 108 (353)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCCC--CcEEEECCEECCCCCHHHCCEEEEecCcccCCCCcHHHHHHhhhhhcccccCC
Confidence 4899999999999999999998754 59999999988542 2346789999999999999999999998654211 123
Q ss_pred CHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 048028 79 TKTKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVNVLQRIA 158 (592)
Q Consensus 79 ~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~la 158 (592)
++++.+++++++++.++|++..|+++ +.|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|+++.
T Consensus 109 ~~~~~~~~~~~~l~~~~L~~~~~~~~-----~~LSgGq~QRvalArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~ 183 (353)
T PRK10851 109 NAAAIKAKVTQLLEMVQLAHLADRYP-----AQLSGGQKQRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLH 183 (353)
T ss_pred CHHHHHHHHHHHHHHcCCchhhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHH
Confidence 45566788999999999988776554 5699999999999999999999999999999999999999999999998
Q ss_pred Hc-CCEEEEEecCChhHHHhhhceEEEecCCeEeeecChhhHH
Q 048028 159 KS-GSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNETPSNLA 200 (592)
Q Consensus 159 ~~-g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~~~~~ 200 (592)
++ |.|+|++||+++ ++..++||+++|++|++++.|+++++.
T Consensus 184 ~~~g~tii~vTHd~~-ea~~~~Dri~vl~~G~i~~~g~~~~i~ 225 (353)
T PRK10851 184 EELKFTSVFVTHDQE-EAMEVADRVVVMSQGNIEQAGTPDQVW 225 (353)
T ss_pred HhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 76 899999999997 689999999999999999999998873
No 37
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=100.00 E-value=3.6e-40 Score=346.19 Aligned_cols=190 Identities=28% Similarity=0.463 Sum_probs=168.9
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCc--ccccceeEEEccCCCCCCCCCHHHHHHHHHHccCCCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLES--KLLKIISAYVMQDDLLFPMLTVEETLMFAAEFRLPRSV 78 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~--~~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~~~~~ 78 (592)
+||+||||||||||+++|+|+++|. +|+|.++|+++.. ...++.+||++|++.+++.+||+||+.+.+.++ ..
T Consensus 70 ~gLlGpNGaGKSTLl~~L~Gl~~p~--~G~i~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~---~~ 144 (340)
T PRK13536 70 FGLLGPNGAGKSTIARMILGMTSPD--AGKITVLGVPVPARARLARARIGVVPQFDNLDLEFTVRENLLVFGRYF---GM 144 (340)
T ss_pred EEEECCCCCCHHHHHHHHHcCCCCC--ceEEEECCEECCcchHHHhccEEEEeCCccCCCCCcHHHHHHHHHHHc---CC
Confidence 5899999999999999999998864 5999999998753 234667999999999999999999999766543 23
Q ss_pred CHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 048028 79 TKTKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVNVLQRIA 158 (592)
Q Consensus 79 ~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~la 158 (592)
+..+.+++++++++.++|.+..++.++ +|||||||||+||++|+++|++|+|||||+|||+.++..+.+.|++++
T Consensus 145 ~~~~~~~~~~~ll~~~~L~~~~~~~~~-----~LS~G~kqrv~lA~aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~ 219 (340)
T PRK13536 145 STREIEAVIPSLLEFARLESKADARVS-----DLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLL 219 (340)
T ss_pred CHHHHHHHHHHHHHHcCCchhhCCChh-----hCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHH
Confidence 344556678899999999988877765 599999999999999999999999999999999999999999999998
Q ss_pred HcCCEEEEEecCChhHHHhhhceEEEecCCeEeeecChhhHHH
Q 048028 159 KSGSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNETPSNLAQ 201 (592)
Q Consensus 159 ~~g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~~~~~~ 201 (592)
++|+|||++||+++ ++.++||||++|++|++++.|+++++.+
T Consensus 220 ~~g~tilisSH~l~-e~~~~~d~i~il~~G~i~~~g~~~~l~~ 261 (340)
T PRK13536 220 ARGKTILLTTHFME-EAERLCDRLCVLEAGRKIAEGRPHALID 261 (340)
T ss_pred hCCCEEEEECCCHH-HHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 88999999999997 7899999999999999999999998754
No 38
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.4e-40 Score=349.60 Aligned_cols=189 Identities=29% Similarity=0.447 Sum_probs=168.2
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCcc-cccceeEEEccCCCCCCCCCHHHHHHHHHHccCCCCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLESK-LLKIISAYVMQDDLLFPMLTVEETLMFAAEFRLPRSVT 79 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~~-~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~ 79 (592)
++|+|||||||||||++|+|+.++. +|+|.++|+++... ..++.+|||+|+..+||++||.||+.|+.+.+ ..+
T Consensus 48 ~~llGpsGsGKSTLLr~IaGl~~p~--~G~I~i~g~~i~~~~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~---~~~ 122 (377)
T PRK11607 48 FALLGASGCGKSTLLRMLAGFEQPT--AGQIMLDGVDLSHVPPYQRPINMMFQSYALFPHMTVEQNIAFGLKQD---KLP 122 (377)
T ss_pred EEEECCCCCcHHHHHHHHhCCCCCC--ceEEEECCEECCCCCHHHCCEEEEeCCCccCCCCCHHHHHHHHHHHc---CCC
Confidence 4899999999999999999998754 59999999987542 34567999999999999999999999987543 235
Q ss_pred HHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Q 048028 80 KTKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVNVLQRIAK 159 (592)
Q Consensus 80 ~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~la~ 159 (592)
+.+.+++++++++.++|.+..++. +++|||||||||+|||||+.+|++|||||||++||...+..+.+.|+++.+
T Consensus 123 ~~~~~~~v~~~l~~l~L~~~~~~~-----~~~LSgGq~QRVaLARAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~ 197 (377)
T PRK11607 123 KAEIASRVNEMLGLVHMQEFAKRK-----PHQLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILE 197 (377)
T ss_pred HHHHHHHHHHHHHHcCCchhhcCC-----hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH
Confidence 566778899999999999877655 456999999999999999999999999999999999999999999999876
Q ss_pred c-CCEEEEEecCChhHHHhhhceEEEecCCeEeeecChhhHH
Q 048028 160 S-GSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNETPSNLA 200 (592)
Q Consensus 160 ~-g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~~~~~ 200 (592)
+ |.|+|++||+++ ++..++||+++|++|+++..|+++++.
T Consensus 198 ~~g~tii~vTHd~~-ea~~laDri~vl~~G~i~~~g~~~~~~ 238 (377)
T PRK11607 198 RVGVTCVMVTHDQE-EAMTMAGRIAIMNRGKFVQIGEPEEIY 238 (377)
T ss_pred hcCCEEEEEcCCHH-HHHHhCCEEEEEeCCEEEEEcCHHHHH
Confidence 4 899999999997 789999999999999999999998874
No 39
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=100.00 E-value=3e-40 Score=306.57 Aligned_cols=183 Identities=29% Similarity=0.495 Sum_probs=164.9
Q ss_pred EEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCc------ccccceeEEEccCCCCCCCCCHHHHHHHHHHccCC
Q 048028 2 AILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLES------KLLKIISAYVMQDDLLFPMLTVEETLMFAAEFRLP 75 (592)
Q Consensus 2 aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~------~~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~~ 75 (592)
-|.||||||||||||+|.+..+|+ +|+|.+||.+++. ...|+++|.|+||..|.+++||.||+.|+.+..
T Consensus 32 fl~GpSGAGKSTllkLi~~~e~pt--~G~i~~~~~dl~~l~~~~iP~LRR~IGvVFQD~rLL~~~tvyeNVA~pL~v~-- 107 (223)
T COG2884 32 FLTGPSGAGKSTLLKLIYGEERPT--RGKILVNGHDLSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVALPLRVI-- 107 (223)
T ss_pred EEECCCCCCHHHHHHHHHhhhcCC--CceEEECCeecccccccccchhhheeeeEeeeccccccchHhhhhhhhhhcc--
Confidence 489999999999999999998865 5999999999864 246788999999999999999999999998765
Q ss_pred CCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHH
Q 048028 76 RSVTKTKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVNVLQ 155 (592)
Q Consensus 76 ~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~ 155 (592)
..+.++.+++|.++|+.+||.+.++.. +.+|||||||||+||||++++|++|+.||||-+|||..+.+|++++.
T Consensus 108 -G~~~~~i~~rV~~~L~~VgL~~k~~~l-----P~~LSGGEQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfe 181 (223)
T COG2884 108 -GKPPREIRRRVSEVLDLVGLKHKARAL-----PSQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFE 181 (223)
T ss_pred -CCCHHHHHHHHHHHHHHhccchhhhcC-----ccccCchHHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHH
Confidence 456788899999999999999988654 45799999999999999999999999999999999999999999999
Q ss_pred HHHHcCCEEEEEecCChhHHHhhhceEEEecCCeEeeecC
Q 048028 156 RIAKSGSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNET 195 (592)
Q Consensus 156 ~la~~g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~ 195 (592)
++.+.|.||++.||+.+ -+..+-.|++.|++|+++....
T Consensus 182 einr~GtTVl~ATHd~~-lv~~~~~rvl~l~~Grl~~d~~ 220 (223)
T COG2884 182 EINRLGTTVLMATHDLE-LVNRMRHRVLALEDGRLVRDES 220 (223)
T ss_pred HHhhcCcEEEEEeccHH-HHHhccCcEEEEeCCEEEeccc
Confidence 99999999999999976 4667778999999999987543
No 40
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.4e-40 Score=328.13 Aligned_cols=190 Identities=26% Similarity=0.450 Sum_probs=168.8
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecC----cccccceeEEEccCC-CCCCCCCHHHHHHHHHHccCC
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLE----SKLLKIISAYVMQDD-LLFPMLTVEETLMFAAEFRLP 75 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~----~~~~~~~~~yv~Q~~-~l~~~lTV~E~l~f~~~l~~~ 75 (592)
++|+||||||||||+++|+|+++|. +|+|.++|.++. ....++.+|||+|++ ..+-.-||.|.+.|+....
T Consensus 33 ~~i~G~nGsGKSTL~~~l~GLl~p~--~G~v~~~g~~~~~~~~~~~~~~~vG~VfQnpd~q~~~~tV~~evafg~~n~-- 108 (235)
T COG1122 33 VLLIGPNGSGKSTLLKLLNGLLKPT--SGEVLVDGLDTSSEKSLLELRQKVGLVFQNPDDQLFGPTVEDEVAFGLENL-- 108 (235)
T ss_pred EEEECCCCCCHHHHHHHHcCcCcCC--CCEEEECCeeccchhhHHHhhcceEEEEECcccccccCcHHHHHhhchhhc--
Confidence 4799999999999999999999865 499999999875 346788899999996 3344559999999987643
Q ss_pred CCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHH
Q 048028 76 RSVTKTKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVNVLQ 155 (592)
Q Consensus 76 ~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~ 155 (592)
..+.++.+++++++++.+|+.+.++.. +..|||||||||+||.+|+.+|++|+|||||||||+..+.++++.++
T Consensus 109 -g~~~~e~~~rv~~~l~~vgl~~~~~r~-----p~~LSGGqkqRvaIA~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~ 182 (235)
T COG1122 109 -GLPREEIEERVAEALELVGLEELLDRP-----PFNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLK 182 (235)
T ss_pred -CCCHHHHHHHHHHHHHHcCchhhccCC-----ccccCCcceeeHHhhHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHH
Confidence 466778899999999999999987654 56799999999999999999999999999999999999999999999
Q ss_pred HHHHc-CCEEEEEecCChhHHHhhhceEEEecCCeEeeecChhhHHH
Q 048028 156 RIAKS-GSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNETPSNLAQ 201 (592)
Q Consensus 156 ~la~~-g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~~~~~~ 201 (592)
++.++ |+|+|++|||.+ .+..++||+++|++|+++++|++.++.+
T Consensus 183 ~L~~~~~~tii~~tHd~~-~~~~~ad~v~vl~~G~i~~~g~p~~i~~ 228 (235)
T COG1122 183 KLKEEGGKTIIIVTHDLE-LVLEYADRVVVLDDGKILADGDPAEIFN 228 (235)
T ss_pred HHHhcCCCeEEEEeCcHH-HHHhhCCEEEEEECCEEeecCCHHHHhh
Confidence 99987 689999999997 6899999999999999999999877643
No 41
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.9e-40 Score=347.72 Aligned_cols=189 Identities=26% Similarity=0.454 Sum_probs=167.0
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCcc-cccceeEEEccCCCCCCCCCHHHHHHHHHHccCCCCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLESK-LLKIISAYVMQDDLLFPMLTVEETLMFAAEFRLPRSVT 79 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~~-~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~ 79 (592)
++|+||||||||||||+|+|+.++. +|+|.++|+++... ..++.++||+|+..+++++||+||+.|..+.+ ..+
T Consensus 32 ~~l~G~nGsGKSTLL~~iaGl~~p~--~G~I~~~g~~i~~~~~~~~~i~~v~Q~~~l~~~~tv~eni~~~~~~~---~~~ 106 (369)
T PRK11000 32 VVFVGPSGCGKSTLLRMIAGLEDIT--SGDLFIGEKRMNDVPPAERGVGMVFQSYALYPHLSVAENMSFGLKLA---GAK 106 (369)
T ss_pred EEEECCCCCcHHHHHHHHhCCCCCC--ceEEEECCEECCCCCHhHCCEEEEeCCcccCCCCCHHHHHHhHHhhc---CCC
Confidence 4899999999999999999998754 59999999987542 23456899999999999999999999986543 234
Q ss_pred HHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Q 048028 80 KTKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVNVLQRIAK 159 (592)
Q Consensus 80 ~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~la~ 159 (592)
+.+.+++++++++.+||++..++.+ .+|||||||||+|||+|+.+|++|||||||+|||+.++..+.+.|+++.+
T Consensus 107 ~~~~~~~~~~~l~~lgL~~~~~~~~-----~~LSgGq~QRvaLAraL~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~ 181 (369)
T PRK11000 107 KEEINQRVNQVAEVLQLAHLLDRKP-----KALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHK 181 (369)
T ss_pred HHHHHHHHHHHHHHcCChhhhcCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH
Confidence 4556678999999999988776655 46999999999999999999999999999999999999999999999987
Q ss_pred c-CCEEEEEecCChhHHHhhhceEEEecCCeEeeecChhhHH
Q 048028 160 S-GSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNETPSNLA 200 (592)
Q Consensus 160 ~-g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~~~~~ 200 (592)
+ |.|+|++||+++ ++.++||++++|++|+++..|+++++.
T Consensus 182 ~~g~tvI~vTHd~~-~~~~~~d~i~vl~~G~i~~~g~~~~i~ 222 (369)
T PRK11000 182 RLGRTMIYVTHDQV-EAMTLADKIVVLDAGRVAQVGKPLELY 222 (369)
T ss_pred HhCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 5 899999999997 688999999999999999999998773
No 42
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=8.7e-40 Score=324.11 Aligned_cols=188 Identities=31% Similarity=0.501 Sum_probs=163.7
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCc--ccccceeEEEccCCCCCCCCCHHHHHHHHHHccCCCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLES--KLLKIISAYVMQDDLLFPMLTVEETLMFAAEFRLPRSV 78 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~--~~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~~~~~ 78 (592)
++|+||||||||||+|+|+|+.++ .+|+|.++|.++.. ...++.++|++|++.+++.+||+||+.+....+ ..
T Consensus 29 ~~i~G~nGsGKSTLl~~i~G~~~~--~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~ 103 (220)
T cd03265 29 FGLLGPNGAGKTTTIKMLTTLLKP--TSGRATVAGHDVVREPREVRRRIGIVFQDLSVDDELTGWENLYIHARLY---GV 103 (220)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEecCcChHHHhhcEEEecCCccccccCcHHHHHHHHHHHc---CC
Confidence 489999999999999999999875 46999999987643 234566899999999999999999999876543 22
Q ss_pred CHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 048028 79 TKTKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVNVLQRIA 158 (592)
Q Consensus 79 ~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~la 158 (592)
+..+.+++++++++.+||++..++.++ .|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|++++
T Consensus 104 ~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qr~~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~ 178 (220)
T cd03265 104 PGAERRERIDELLDFVGLLEAADRLVK-----TYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLK 178 (220)
T ss_pred CHHHHHHHHHHHHHHcCCHHHhhCChh-----hCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHH
Confidence 344456778999999999887766654 599999999999999999999999999999999999999999999998
Q ss_pred Hc-CCEEEEEecCChhHHHhhhceEEEecCCeEeeecChhhH
Q 048028 159 KS-GSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNETPSNL 199 (592)
Q Consensus 159 ~~-g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~~~~ 199 (592)
++ |+|||+++|+++ ++.+.+||+++|++|+++..|+++++
T Consensus 179 ~~~~~tvi~~tH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~ 219 (220)
T cd03265 179 EEFGMTILLTTHYME-EAEQLCDRVAIIDHGRIIAEGTPEEL 219 (220)
T ss_pred HhcCCEEEEEeCCHH-HHHHhCCEEEEEeCCEEEEeCChHHc
Confidence 86 899999999997 68889999999999999999887653
No 43
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=100.00 E-value=1.2e-39 Score=338.43 Aligned_cols=190 Identities=31% Similarity=0.507 Sum_probs=166.3
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCc--ccccceeEEEccCCCCCCCCCHHHHHHHHHHccCCCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLES--KLLKIISAYVMQDDLLFPMLTVEETLMFAAEFRLPRSV 78 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~--~~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~~~~~ 78 (592)
++|+|||||||||||++|+|+.+|. +|+|.++|+++.. ...++.+||++|++.+++.+||+||+.+....+ ..
T Consensus 33 ~~l~G~NGaGKSTLl~~l~Gl~~p~--~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~---~~ 107 (303)
T TIGR01288 33 FGLLGPNGAGKSTIARMLLGMISPD--RGKITVLGEPVPSRARLARVAIGVVPQFDNLDPEFTVRENLLVFGRYF---GM 107 (303)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCCC--ceEEEECCEECcccHHHHhhcEEEEeccccCCcCCcHHHHHHHHHHHc---CC
Confidence 5899999999999999999998754 5999999998743 234567899999999999999999998755432 13
Q ss_pred CHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 048028 79 TKTKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVNVLQRIA 158 (592)
Q Consensus 79 ~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~la 158 (592)
+..+.+++++++++.++|.+..++.++ .|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|++++
T Consensus 108 ~~~~~~~~~~~ll~~~~l~~~~~~~~~-----~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~ 182 (303)
T TIGR01288 108 STREIEAVIPSLLEFARLESKADVRVA-----LLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLL 182 (303)
T ss_pred CHHHHHHHHHHHHHHCCChhHhcCchh-----hCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHH
Confidence 344455678899999999987777664 599999999999999999999999999999999999999999999998
Q ss_pred HcCCEEEEEecCChhHHHhhhceEEEecCCeEeeecChhhHHH
Q 048028 159 KSGSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNETPSNLAQ 201 (592)
Q Consensus 159 ~~g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~~~~~~ 201 (592)
++|+|||+++|+++ ++.++||++++|++|++++.|+++++.+
T Consensus 183 ~~g~til~~sH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 224 (303)
T TIGR01288 183 ARGKTILLTTHFME-EAERLCDRLCVLESGRKIAEGRPHALID 224 (303)
T ss_pred hCCCEEEEECCCHH-HHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 88999999999997 6889999999999999999999988743
No 44
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=100.00 E-value=1.4e-39 Score=326.00 Aligned_cols=191 Identities=30% Similarity=0.503 Sum_probs=163.5
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCccc----ccceeEEEccCCCCCCCCCHHHHHHHHHHccCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLESKL----LKIISAYVMQDDLLFPMLTVEETLMFAAEFRLPR 76 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~~~----~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~~~ 76 (592)
++|+|||||||||||++|+|+.++. +|+|.++|.++.... .++.++|++|++.+++.+||+||+.+....+...
T Consensus 29 ~~l~G~nGsGKSTLl~~l~Gl~~~~--~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~~~l~~~~~~~~~~ 106 (236)
T cd03219 29 HGLIGPNGAGKTTLFNLISGFLRPT--SGSVLFDGEDITGLPPHEIARLGIGRTFQIPRLFPELTVLENVMVAAQARTGS 106 (236)
T ss_pred EEEECCCCCCHHHHHHHHcCCCCCC--CceEEECCEECCCCCHHHHHhcCEEEEecccccccCCCHHHHHHHHHhhcccc
Confidence 4899999999999999999998754 599999999875421 2345899999999999999999998876432111
Q ss_pred C-------CCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHH
Q 048028 77 S-------VTKTKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFM 149 (592)
Q Consensus 77 ~-------~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~ 149 (592)
. ....+.+++++++++.+|+++..++.+ +.|||||||||+||++|+.+|++++|||||+|||+.++..
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~ 181 (236)
T cd03219 107 GLLLARARREEREARERAEELLERVGLADLADRPA-----GELSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEE 181 (236)
T ss_pred ccccccccccHHHHHHHHHHHHHHcCccchhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHH
Confidence 0 023445567899999999987776554 4699999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCEEEEEecCChhHHHhhhceEEEecCCeEeeecChhhH
Q 048028 150 VVNVLQRIAKSGSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNETPSNL 199 (592)
Q Consensus 150 i~~~l~~la~~g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~~~~ 199 (592)
+.+.|++++++|+|||+++|+++ ++.++||++++|++|+++..|+++++
T Consensus 182 l~~~l~~~~~~~~tii~vsH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~ 230 (236)
T cd03219 182 LAELIRELRERGITVLLVEHDMD-VVMSLADRVTVLDQGRVIAEGTPDEV 230 (236)
T ss_pred HHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEEeCCEEEeecCHHHh
Confidence 99999999878899999999997 68899999999999999999988765
No 45
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.4e-39 Score=320.96 Aligned_cols=183 Identities=32% Similarity=0.515 Sum_probs=158.5
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCcc-cccceeEEEccCCCCCCCCCHHHHHHHHHHccCCCCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLESK-LLKIISAYVMQDDLLFPMLTVEETLMFAAEFRLPRSVT 79 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~~-~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~ 79 (592)
++|+||||||||||+++|+|+.+| .+|+|.++|+++... ..++.++|++|++.+++.+||+||+.+..... ...
T Consensus 29 ~~i~G~nGsGKSTLl~~l~G~~~p--~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~---~~~ 103 (213)
T cd03259 29 LALLGPSGCGKTTLLRLIAGLERP--DSGEILIDGRDVTGVPPERRNIGMVFQDYALFPHLTVAENIAFGLKLR---GVP 103 (213)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCC--CCeEEEECCEEcCcCchhhccEEEEcCchhhccCCcHHHHHHhHHHHc---CCC
Confidence 589999999999999999999875 459999999987532 23456899999999999999999998875432 123
Q ss_pred HHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Q 048028 80 KTKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVNVLQRIAK 159 (592)
Q Consensus 80 ~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~la~ 159 (592)
..+.+++++++++.+||.+..++.+ +.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++
T Consensus 104 ~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrl~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~ 178 (213)
T cd03259 104 KAEIRARVRELLELVGLEGLLNRYP-----HELSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREELREELKELQR 178 (213)
T ss_pred HHHHHHHHHHHHHHcCChhhhhcCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH
Confidence 4455667899999999988776655 45999999999999999999999999999999999999999999999987
Q ss_pred c-CCEEEEEecCChhHHHhhhceEEEecCCeEeeec
Q 048028 160 S-GSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNE 194 (592)
Q Consensus 160 ~-g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g 194 (592)
+ |+|||+++|+++ ++.++||++++|++|+++..|
T Consensus 179 ~~~~tii~~sH~~~-~~~~~~d~v~~l~~G~i~~~g 213 (213)
T cd03259 179 ELGITTIYVTHDQE-EALALADRIAVMNEGRIVQVG 213 (213)
T ss_pred HcCCEEEEEecCHH-HHHHhcCEEEEEECCEEEecC
Confidence 4 899999999997 688999999999999998765
No 46
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=100.00 E-value=1.8e-39 Score=324.32 Aligned_cols=188 Identities=29% Similarity=0.528 Sum_probs=163.1
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCcc---c-ccceeEEEccCCCCCCCCCHHHHHHHHHHccCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLESK---L-LKIISAYVMQDDLLFPMLTVEETLMFAAEFRLPR 76 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~~---~-~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~~~ 76 (592)
++|+|||||||||||++|+|+.++. +|+|.++|+++... . .++.++|++|++.+++.+||+||+.+....+
T Consensus 29 ~~l~G~nGsGKSTLl~~l~Gl~~p~--~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~--- 103 (232)
T cd03218 29 VGLLGPNGAGKTTTFYMIVGLVKPD--SGKILLDGQDITKLPMHKRARLGIGYLPQEASIFRKLTVEENILAVLEIR--- 103 (232)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCCC--CcEEEECCEecccCCHhHHHhccEEEecCCccccccCcHHHHHHHHHHhc---
Confidence 4899999999999999999998754 59999999987432 1 2346899999999999999999998865433
Q ss_pred CCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHH
Q 048028 77 SVTKTKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVNVLQR 156 (592)
Q Consensus 77 ~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~ 156 (592)
.....+..++++++++.+|+++..++.+ +.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++
T Consensus 104 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~ 178 (232)
T cd03218 104 GLSKKEREEKLEELLEEFHITHLRKSKA-----SSLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKI 178 (232)
T ss_pred CCCHHHHHHHHHHHHHHcCChhhhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHH
Confidence 1233445567899999999987776655 46999999999999999999999999999999999999999999999
Q ss_pred HHHcCCEEEEEecCChhHHHhhhceEEEecCCeEeeecChhhH
Q 048028 157 IAKSGSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNETPSNL 199 (592)
Q Consensus 157 la~~g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~~~~ 199 (592)
++++|+|||+++|+++ ++.+++|++++|++|+++..|+.+++
T Consensus 179 ~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~ 220 (232)
T cd03218 179 LKDRGIGVLITDHNVR-ETLSITDRAYIIYEGKVLAEGTPEEI 220 (232)
T ss_pred HHHCCCEEEEEeCCHH-HHHHhCCEEEEEECCeEEEEeCHHHh
Confidence 9888999999999997 68999999999999999999988765
No 47
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=100.00 E-value=1e-39 Score=322.71 Aligned_cols=179 Identities=30% Similarity=0.489 Sum_probs=155.7
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCcc------cccceeEEEccCCCCCCCCCHHHHHHHHHHccC
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLESK------LLKIISAYVMQDDLLFPMLTVEETLMFAAEFRL 74 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~~------~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~ 74 (592)
++|+||||||||||+|+|+|+.++. +|+|.++|+++... ..++.++|++|++.+++.+||+||+.+....+
T Consensus 32 ~~i~G~nGsGKSTLl~~l~Gl~~~~--~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~- 108 (216)
T TIGR00960 32 VFLVGHSGAGKSTFLKLILGIEKPT--RGKIRFNGQDLTRLRGREIPFLRRHIGMVFQDHRLLSDRTVYDNVAFPLRII- 108 (216)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCCC--ceEEEECCEehhhcChhHHHHHHHhceEEecCccccccccHHHHHHHHHHhc-
Confidence 4899999999999999999998754 59999999987431 24567899999999999999999999876543
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHH
Q 048028 75 PRSVTKTKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVNVL 154 (592)
Q Consensus 75 ~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l 154 (592)
.....+.+++++++++.+||.+..++.+ ..|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|
T Consensus 109 --~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l 181 (216)
T TIGR00960 109 --GVPPRDANERVSAALEKVGLEGKAHALP-----MQLSGGEQQRVAIARAIVHKPPLLLADEPTGNLDPELSRDIMRLF 181 (216)
T ss_pred --CCCHHHHHHHHHHHHHHcCChhhhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHH
Confidence 1233445678899999999988776655 469999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCEEEEEecCChhHHHhhhceEEEecCCeE
Q 048028 155 QRIAKSGSIVIMSIHQPSYRILSLLDRLIILSHGQS 190 (592)
Q Consensus 155 ~~la~~g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~ 190 (592)
++++++|+|||+++|+++ ++.++||++++|++|++
T Consensus 182 ~~~~~~~~tii~vsH~~~-~~~~~~d~i~~l~~G~i 216 (216)
T TIGR00960 182 EEFNRRGTTVLVATHDIN-LVETYRHRTLTLSRGRL 216 (216)
T ss_pred HHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEeCCcC
Confidence 999877999999999997 58889999999999974
No 48
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.9e-39 Score=341.98 Aligned_cols=189 Identities=26% Similarity=0.421 Sum_probs=166.1
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCcc------cccceeEEEccCCCCCCCCCHHHHHHHHHHccC
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLESK------LLKIISAYVMQDDLLFPMLTVEETLMFAAEFRL 74 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~~------~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~ 74 (592)
++|+||||||||||+|+|+|+.+|. +|+|.++|+++... ..++.++|++|++.+++.+||+||+.+....+
T Consensus 34 ~~iiG~nGsGKSTLlk~L~Gl~~p~--~G~I~~~g~~i~~~~~~~~~~~~~~ig~v~q~~~l~~~~tv~eni~~~~~~~- 110 (343)
T PRK11153 34 FGVIGASGAGKSTLIRCINLLERPT--SGRVLVDGQDLTALSEKELRKARRQIGMIFQHFNLLSSRTVFDNVALPLELA- 110 (343)
T ss_pred EEEECCCCCcHHHHHHHHhCCCCCC--ceEEEECCEECCcCCHHHHHHHhcCEEEEeCCCccCCCCcHHHHHHHHHHHc-
Confidence 4899999999999999999998754 59999999987531 23567899999999999999999999876543
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHH
Q 048028 75 PRSVTKTKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVNVL 154 (592)
Q Consensus 75 ~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l 154 (592)
..++.+.+++++++++.+||++..++.+ +.|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|
T Consensus 111 --~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LSgGq~qRv~lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L 183 (343)
T PRK11153 111 --GTPKAEIKARVTELLELVGLSDKADRYP-----AQLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELL 183 (343)
T ss_pred --CCCHHHHHHHHHHHHHHcCCchhhhCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence 2344556678999999999988776654 469999999999999999999999999999999999999999999
Q ss_pred HHHHHc-CCEEEEEecCChhHHHhhhceEEEecCCeEeeecChhhHH
Q 048028 155 QRIAKS-GSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNETPSNLA 200 (592)
Q Consensus 155 ~~la~~-g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~~~~~ 200 (592)
++++++ |+|||++||+++ ++.++||++++|++|++++.|+++++.
T Consensus 184 ~~l~~~~g~tiilvtH~~~-~i~~~~d~v~~l~~G~i~~~g~~~~~~ 229 (343)
T PRK11153 184 KDINRELGLTIVLITHEMD-VVKRICDRVAVIDAGRLVEQGTVSEVF 229 (343)
T ss_pred HHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 999875 899999999997 688899999999999999999988763
No 49
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.9e-39 Score=324.41 Aligned_cols=191 Identities=26% Similarity=0.422 Sum_probs=162.7
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCcc-cccceeEEEccCCCCCCCCCHHHHHHHHHHccCC-CCC
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLESK-LLKIISAYVMQDDLLFPMLTVEETLMFAAEFRLP-RSV 78 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~~-~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~~-~~~ 78 (592)
++|+||||||||||+++|+|+.++ .+|+|.++|+++... ..++.++|++|++.+++.+||+||+.+....+.. ...
T Consensus 31 ~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~ 108 (239)
T cd03296 31 VALLGPSGSGKTTLLRLIAGLERP--DSGTILFGGEDATDVPVQERNVGFVFQHYALFRHMTVFDNVAFGLRVKPRSERP 108 (239)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEECCcCCccccceEEEecCCcccCCCCHHHHHhhhhhhccccccC
Confidence 489999999999999999999875 469999999987532 2245689999999999999999999887543211 001
Q ss_pred CHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 048028 79 TKTKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVNVLQRIA 158 (592)
Q Consensus 79 ~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~la 158 (592)
...+..++++++++.+||.+..++.+ ..|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|++++
T Consensus 109 ~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~ 183 (239)
T cd03296 109 PEAEIRAKVHELLKLVQLDWLADRYP-----AQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLH 183 (239)
T ss_pred CHHHHHHHHHHHHHHcCChhhhhcCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHH
Confidence 23344567889999999987776655 4699999999999999999999999999999999999999999999998
Q ss_pred Hc-CCEEEEEecCChhHHHhhhceEEEecCCeEeeecChhhH
Q 048028 159 KS-GSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNETPSNL 199 (592)
Q Consensus 159 ~~-g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~~~~ 199 (592)
++ |+|||+++|+++ ++.+.+|++++|++|++++.|+++++
T Consensus 184 ~~~~~tvii~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~ 224 (239)
T cd03296 184 DELHVTTVFVTHDQE-EALEVADRVVVMNKGRIEQVGTPDEV 224 (239)
T ss_pred HHcCCEEEEEeCCHH-HHHHhCCEEEEEECCeEEEecCHHHH
Confidence 75 899999999997 58889999999999999999988765
No 50
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.7e-39 Score=323.30 Aligned_cols=188 Identities=28% Similarity=0.446 Sum_probs=163.7
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCcc------cccceeEEEccCCCCCCCCCHHHHHHHHHHccC
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLESK------LLKIISAYVMQDDLLFPMLTVEETLMFAAEFRL 74 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~~------~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~ 74 (592)
++|+||||||||||+++|+|++++. +|+|.++|+++... ..++.++|++|++.+++.+|++||+.+....+
T Consensus 34 ~~l~G~nGsGKSTLl~~l~G~~~~~--~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~- 110 (233)
T cd03258 34 FGIIGRSGAGKSTLIRCINGLERPT--SGSVLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLSSRTVFENVALPLEIA- 110 (233)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCCC--CceEEECCEEcccCCHHHHHHHHhheEEEccCcccCCCCcHHHHHHHHHHHc-
Confidence 5899999999999999999998754 59999999987532 23567899999999999999999998876543
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHH
Q 048028 75 PRSVTKTKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVNVL 154 (592)
Q Consensus 75 ~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l 154 (592)
.....+..++++++++.++|.+..++.+ +.|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|
T Consensus 111 --~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l 183 (233)
T cd03258 111 --GVPKAEIEERVLELLELVGLEDKADAYP-----AQLSGGQKQRVGIARALANNPKVLLCDEATSALDPETTQSILALL 183 (233)
T ss_pred --CCCHHHHHHHHHHHHHHCCChhhhhcCh-----hhCCHHHHHHHHHHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHH
Confidence 1234445667899999999987776554 569999999999999999999999999999999999999999999
Q ss_pred HHHHHc-CCEEEEEecCChhHHHhhhceEEEecCCeEeeecChhhH
Q 048028 155 QRIAKS-GSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNETPSNL 199 (592)
Q Consensus 155 ~~la~~-g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~~~~ 199 (592)
++++++ |+|||+++|+++ ++.+++|++++|++|++++.|+++++
T Consensus 184 ~~~~~~~~~tvii~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~ 228 (233)
T cd03258 184 RDINRELGLTIVLITHEME-VVKRICDRVAVMEKGEVVEEGTVEEV 228 (233)
T ss_pred HHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEecCHHHH
Confidence 999875 899999999987 68889999999999999999987765
No 51
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=1.1e-40 Score=311.60 Aligned_cols=191 Identities=27% Similarity=0.505 Sum_probs=171.2
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCccc----ccceeEEEccCCCCCCCCCHHHHHHHHHHccCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLESKL----LKIISAYVMQDDLLFPMLTVEETLMFAAEFRLPR 76 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~~~----~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~~~ 76 (592)
++++|||||||||.+.++.|+.+++ +|+|.+||.+++... .|..+||+||++..|..|||+||+....+.+..
T Consensus 33 VGLLGPNGAGKTT~Fymi~Glv~~d--~G~i~ld~~diT~lPm~~RArlGigYLpQE~SIFr~LtV~dNi~~vlE~~~~- 109 (243)
T COG1137 33 VGLLGPNGAGKTTTFYMIVGLVRPD--SGKILLDDEDITKLPMHKRARLGIGYLPQEASIFRKLTVEDNIMAVLEIREK- 109 (243)
T ss_pred EEEECCCCCCceeEEEEEEEEEecC--CceEEECCcccccCChHHHhhcCcccccccchHhhcCcHHHHHHHHHhhhhc-
Confidence 5899999999999999999999865 599999999998643 344579999999999999999999988877631
Q ss_pred CCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHH
Q 048028 77 SVTKTKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVNVLQR 156 (592)
Q Consensus 77 ~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~ 156 (592)
...+.+++.+++++|++|.|.|.+|++- ..||||||||+.|||||+.+|+.++||||++|.||.+..+|.++++.
T Consensus 110 d~~~~~~~~~l~~LL~ef~i~hlr~~~a-----~sLSGGERRR~EIARaLa~~P~fiLLDEPFAGVDPiaV~dIq~iI~~ 184 (243)
T COG1137 110 DLKKAERKEELDALLEEFHITHLRDSKA-----YSLSGGERRRVEIARALAANPKFILLDEPFAGVDPIAVIDIQRIIKH 184 (243)
T ss_pred chhHHHHHHHHHHHHHHhchHHHhcCcc-----cccccchHHHHHHHHHHhcCCCEEEecCCccCCCchhHHHHHHHHHH
Confidence 2233456677899999999999997764 46999999999999999999999999999999999999999999999
Q ss_pred HHHcCCEEEEEecCChhHHHhhhceEEEecCCeEeeecChhhHH
Q 048028 157 IAKSGSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNETPSNLA 200 (592)
Q Consensus 157 la~~g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~~~~~ 200 (592)
|+++|..|++|-|+.. |...+|||..++++|++..+|+++++.
T Consensus 185 L~~rgiGvLITDHNVR-EtL~i~dRaYIi~~G~vla~G~p~ei~ 227 (243)
T COG1137 185 LKDRGIGVLITDHNVR-ETLDICDRAYIISDGKVLAEGSPEEIV 227 (243)
T ss_pred HHhCCceEEEccccHH-HHHhhhheEEEEecCeEEecCCHHHHh
Confidence 9999999999999998 799999999999999999999999874
No 52
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.2e-39 Score=325.49 Aligned_cols=191 Identities=30% Similarity=0.479 Sum_probs=161.4
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCcc------cccceeEEEccCCCCCCCCCHHHHHHHHHHccC
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLESK------LLKIISAYVMQDDLLFPMLTVEETLMFAAEFRL 74 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~~------~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~ 74 (592)
++|+||||||||||+|+|+|+.++ .+|+|.++|+++... ..++.++|++|++.+++.+||+||+.+......
T Consensus 30 ~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~ 107 (241)
T cd03256 30 VALIGPSGAGKSTLLRCLNGLVEP--TSGSVLIDGTDINKLKGKALRQLRRQIGMIFQQFNLIERLSVLENVLSGRLGRR 107 (241)
T ss_pred EEEECCCCCCHHHHHHHHhCCcCC--CCceEEECCEeccccCHhHHHHHHhccEEEcccCcccccCcHHHHHHhhhcccc
Confidence 489999999999999999999875 459999999987532 235678999999999999999999987542110
Q ss_pred -----CCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHH
Q 048028 75 -----PRSVTKTKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFM 149 (592)
Q Consensus 75 -----~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~ 149 (592)
.......+..++++++++.++|.+..++.+ +.|||||||||+||++|+.+|++|+|||||+|||+.++..
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~ 182 (241)
T cd03256 108 STWRSLFGLFPKEEKQRALAALERVGLLDKAYQRA-----DQLSGGQQQRVAIARALMQQPKLILADEPVASLDPASSRQ 182 (241)
T ss_pred hhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHH
Confidence 001112334567889999999987665544 5699999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHc-CCEEEEEecCChhHHHhhhceEEEecCCeEeeecChhhH
Q 048028 150 VVNVLQRIAKS-GSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNETPSNL 199 (592)
Q Consensus 150 i~~~l~~la~~-g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~~~~ 199 (592)
+.+.|++++++ |+|||+++|+++ ++.+++|++++|++|++++.|+++++
T Consensus 183 l~~~l~~~~~~~~~tii~~tH~~~-~~~~~~d~v~~l~~G~i~~~~~~~~~ 232 (241)
T cd03256 183 VMDLLKRINREEGITVIVSLHQVD-LAREYADRIVGLKDGRIVFDGPPAEL 232 (241)
T ss_pred HHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEeecCHHHh
Confidence 99999999864 899999999997 58889999999999999999998775
No 53
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.5e-39 Score=319.74 Aligned_cols=184 Identities=33% Similarity=0.513 Sum_probs=160.0
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCcccccceeEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCH
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLESKLLKIISAYVMQDDLLFPMLTVEETLMFAAEFRLPRSVTK 80 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~ 80 (592)
++|+||||||||||+|+|+|+.++ .+|+|.++|+++.. .++.++|++|++.+++.+||+||+.+....+ ..+.
T Consensus 33 ~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~~--~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~ 105 (220)
T cd03293 33 VALVGPSGCGKSTLLRIIAGLERP--TSGEVLVDGEPVTG--PGPDRGYVFQQDALLPWLTVLDNVALGLELQ---GVPK 105 (220)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEECcc--ccCcEEEEecccccccCCCHHHHHHHHHHHc---CCCH
Confidence 489999999999999999999875 46999999998753 3567899999999999999999999876543 1233
Q ss_pred HHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH-
Q 048028 81 TKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVNVLQRIAK- 159 (592)
Q Consensus 81 ~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~la~- 159 (592)
++..++++++++.+||++..++.+ +.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++.+
T Consensus 106 ~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~ 180 (220)
T cd03293 106 AEARERAEELLELVGLSGFENAYP-----HQLSGGMRQRVALARALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRE 180 (220)
T ss_pred HHHHHHHHHHHHHcCChhhhhCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 445677899999999987776655 46999999999999999999999999999999999999999999999975
Q ss_pred cCCEEEEEecCChhHHHhhhceEEEec--CCeEeeecChh
Q 048028 160 SGSIVIMSIHQPSYRILSLLDRLIILS--HGQSVYNETPS 197 (592)
Q Consensus 160 ~g~tvi~~~H~~~~~i~~~~D~v~ll~--~G~~v~~g~~~ 197 (592)
.|+|||+++|+++ ++.++||++++|+ +|+++..++++
T Consensus 181 ~~~tiii~sH~~~-~~~~~~d~i~~l~~~~G~i~~~~~~~ 219 (220)
T cd03293 181 TGKTVLLVTHDID-EAVFLADRVVVLSARPGRIVAEVEVD 219 (220)
T ss_pred cCCEEEEEecCHH-HHHHhCCEEEEEECCCCEEEEEEEec
Confidence 4899999999997 5888999999999 79999887753
No 54
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.3e-39 Score=318.71 Aligned_cols=182 Identities=31% Similarity=0.546 Sum_probs=159.4
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCcccccceeEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCH
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLESKLLKIISAYVMQDDLLFPMLTVEETLMFAAEFRLPRSVTK 80 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~ 80 (592)
++|+|||||||||||++|+|+.++ .+|+|.++|+++.. ..++.++|++|++.+++.+||+||+.+....+ ..+.
T Consensus 29 ~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~~-~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~ 102 (210)
T cd03269 29 FGLLGPNGAGKTTTIRMILGIILP--DSGEVLFDGKPLDI-AARNRIGYLPEERGLYPKMKVIDQLVYLAQLK---GLKK 102 (210)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCCchhH-HHHccEEEeccCCcCCcCCcHHHHHHHHHHHc---CCCh
Confidence 489999999999999999999875 46999999998754 34567899999999999999999998876543 2234
Q ss_pred HHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc
Q 048028 81 TKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVNVLQRIAKS 160 (592)
Q Consensus 81 ~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~la~~ 160 (592)
.+.+++++++++.+|+++..++.+ +.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++
T Consensus 103 ~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrl~la~al~~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~ 177 (210)
T cd03269 103 EEARRRIDEWLERLELSEYANKRV-----EELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELARA 177 (210)
T ss_pred HHHHHHHHHHHHHcCChHHHhCcH-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHC
Confidence 455678899999999987776654 469999999999999999999999999999999999999999999999888
Q ss_pred CCEEEEEecCChhHHHhhhceEEEecCCeEeeec
Q 048028 161 GSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNE 194 (592)
Q Consensus 161 g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g 194 (592)
|+|||+++|++. ++.+++|++++|++|++++.|
T Consensus 178 ~~tii~~sH~~~-~~~~~~d~i~~l~~g~i~~~~ 210 (210)
T cd03269 178 GKTVILSTHQME-LVEELCDRVLLLNKGRAVLYG 210 (210)
T ss_pred CCEEEEECCCHH-HHHHhhhEEEEEeCCEEEecC
Confidence 899999999997 588899999999999998754
No 55
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=100.00 E-value=2.6e-39 Score=335.41 Aligned_cols=189 Identities=33% Similarity=0.536 Sum_probs=167.5
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCc--ccccceeEEEccCCCCCCCCCHHHHHHHHHHccCCCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLES--KLLKIISAYVMQDDLLFPMLTVEETLMFAAEFRLPRSV 78 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~--~~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~~~~~ 78 (592)
++|+||||||||||||+|+|+.++. +|+|.++|+++.. ...++.+||++|++.+++.+||.||+.+.+.++ ..
T Consensus 31 ~~l~G~NGaGKTTLl~~l~Gl~~~~--~G~i~i~g~~~~~~~~~~~~~ig~~~q~~~l~~~~tv~e~l~~~~~~~---~~ 105 (301)
T TIGR03522 31 VGFLGPNGAGKSTTMKIITGYLPPD--SGSVQVCGEDVLQNPKEVQRNIGYLPEHNPLYLDMYVREYLQFIAGIY---GM 105 (301)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCCC--ceEEEECCEEcccChHHHHhceEEecCCCCCCCCCcHHHHHHHHHHHc---CC
Confidence 4899999999999999999998754 5999999998753 234567999999999999999999999877654 23
Q ss_pred CHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 048028 79 TKTKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVNVLQRIA 158 (592)
Q Consensus 79 ~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~la 158 (592)
+.++..++++++++.+||.+..|+.++ .|||||||||+||+||+++|++|+|||||+|||+.++..+.+.|++++
T Consensus 106 ~~~~~~~~~~~~l~~~gl~~~~~~~~~-----~LS~G~~qrv~la~al~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~ 180 (301)
T TIGR03522 106 KGQLLKQRVEEMIELVGLRPEQHKKIG-----QLSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIG 180 (301)
T ss_pred CHHHHHHHHHHHHHHCCCchHhcCchh-----hCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHhc
Confidence 345556778999999999988876654 599999999999999999999999999999999999999999999996
Q ss_pred HcCCEEEEEecCChhHHHhhhceEEEecCCeEeeecChhhHHH
Q 048028 159 KSGSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNETPSNLAQ 201 (592)
Q Consensus 159 ~~g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~~~~~~ 201 (592)
+ ++|||+++|+++ ++.++|||+++|++|++++.|+++++.+
T Consensus 181 ~-~~tiii~sH~l~-~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 221 (301)
T TIGR03522 181 K-DKTIILSTHIMQ-EVEAICDRVIIINKGKIVADKKLDELSA 221 (301)
T ss_pred C-CCEEEEEcCCHH-HHHHhCCEEEEEECCEEEEeCCHHHHHH
Confidence 5 799999999997 6999999999999999999999998755
No 56
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4e-39 Score=332.03 Aligned_cols=202 Identities=28% Similarity=0.439 Sum_probs=169.9
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCc-------ccccceeEEEccCC--CCCCCCCHHHHHHHHHH
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLES-------KLLKIISAYVMQDD--LLFPMLTVEETLMFAAE 71 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~-------~~~~~~~~yv~Q~~--~l~~~lTV~E~l~f~~~ 71 (592)
++|+||||||||||+++|+|++++. +|+|.++|.++.. ...++.++||+|++ .+++ .||.||+.|+..
T Consensus 35 v~i~G~nGsGKSTLl~~l~Gl~~p~--~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~-~tv~~~l~~~~~ 111 (288)
T PRK13643 35 TALIGHTGSGKSTLLQHLNGLLQPT--EGKVTVGDIVVSSTSKQKEIKPVRKKVGVVFQFPESQLFE-ETVLKDVAFGPQ 111 (288)
T ss_pred EEEECCCCChHHHHHHHHhcCCCCC--CcEEEECCEECccccccccHHHHHhhEEEEecCcchhccc-chHHHHHHhHHH
Confidence 5899999999999999999998754 5999999998742 13456789999986 5565 599999998764
Q ss_pred ccCCCCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHH
Q 048028 72 FRLPRSVTKTKKQERVEALINQLGLR-SAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMV 150 (592)
Q Consensus 72 l~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i 150 (592)
.. ..++.+.++++.++++.+||. +..++. ++.||||||||++||++|+.+|++|+|||||+|||+.++..+
T Consensus 112 ~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----~~~LSgGqkqrvaiA~aL~~~p~illLDEPt~gLD~~~~~~l 183 (288)
T PRK13643 112 NF---GIPKEKAEKIAAEKLEMVGLADEFWEKS-----PFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEM 183 (288)
T ss_pred Hc---CCCHHHHHHHHHHHHHHcCCChhhccCC-----cccCCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHH
Confidence 32 234566677899999999996 345443 467999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCEEEEEecCChhHHHhhhceEEEecCCeEeeecChhhHH---HHHHHcCCCCCCCC
Q 048028 151 VNVLQRIAKSGSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNETPSNLA---QFFAEFGHPVPENE 214 (592)
Q Consensus 151 ~~~l~~la~~g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~~~~~---~~f~~~g~~~p~~~ 214 (592)
.+.|++++++|+|||++||+++ ++.++|||+++|++|++++.|+++++. +.+...|..+|...
T Consensus 184 ~~~l~~l~~~g~til~vtHd~~-~~~~~~dri~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~p~~~ 249 (288)
T PRK13643 184 MQLFESIHQSGQTVVLVTHLMD-DVADYADYVYLLEKGHIISCGTPSDVFQEVDFLKAHELGVPKAT 249 (288)
T ss_pred HHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEEECCEEEEECCHHHHHcCHHHHHHcCCCCChHH
Confidence 9999999888999999999997 688899999999999999999998873 34455666665443
No 57
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=100.00 E-value=2.7e-39 Score=320.05 Aligned_cols=183 Identities=30% Similarity=0.502 Sum_probs=160.0
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCc--ccccceeEEEccCCCCCCCCCHHHHHHHHHHccCCCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLES--KLLKIISAYVMQDDLLFPMLTVEETLMFAAEFRLPRSV 78 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~--~~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~~~~~ 78 (592)
++|+|||||||||||++|+|+.++. +|+|.++|+++.. ...++.++|++|++.+++.+||+||+.+....+ ..
T Consensus 34 ~~i~G~nGsGKSTLl~~l~Gl~~~~--~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~ 108 (218)
T cd03266 34 TGLLGPNGAGKTTTLRMLAGLLEPD--AGFATVDGFDVVKEPAEARRRLGFVSDSTGLYDRLTARENLEYFAGLY---GL 108 (218)
T ss_pred EEEECCCCCCHHHHHHHHhCCcCCC--CceEEECCEEcccCHHHHHhhEEEecCCcccCcCCCHHHHHHHHHHHc---CC
Confidence 5899999999999999999998754 6999999998753 234567899999999999999999998865543 23
Q ss_pred CHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 048028 79 TKTKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVNVLQRIA 158 (592)
Q Consensus 79 ~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~la 158 (592)
+..+..++++++++.+|+.+..++.+ +.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++
T Consensus 109 ~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~ 183 (218)
T cd03266 109 KGDELTARLEELADRLGMEELLDRRV-----GGFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLR 183 (218)
T ss_pred CHHHHHHHHHHHHHHcCCHHHHhhhh-----hhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHH
Confidence 34455678899999999988776655 4599999999999999999999999999999999999999999999998
Q ss_pred HcCCEEEEEecCChhHHHhhhceEEEecCCeEeeec
Q 048028 159 KSGSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNE 194 (592)
Q Consensus 159 ~~g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g 194 (592)
++|+|||+++|++. ++.+++|++++|++|+++..|
T Consensus 184 ~~~~tii~~tH~~~-~~~~~~d~i~~l~~G~i~~~~ 218 (218)
T cd03266 184 ALGKCILFSTHIMQ-EVERLCDRVVVLHRGRVVYEG 218 (218)
T ss_pred HCCCEEEEEeCCHH-HHHHhcCEEEEEECCEEeecC
Confidence 77999999999997 688899999999999998654
No 58
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.4e-39 Score=314.60 Aligned_cols=189 Identities=33% Similarity=0.493 Sum_probs=163.5
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCcc----cccceeEEEccCC--CCCCCCCHHHHHHHHHHccC
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLESK----LLKIISAYVMQDD--LLFPMLTVEETLMFAAEFRL 74 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~~----~~~~~~~yv~Q~~--~l~~~lTV~E~l~f~~~l~~ 74 (592)
+||+|+||||||||.++|+|+.++. +|+|.++|++..+. .+++.+.+|+||+ .+.|..||++.|.-+.+.
T Consensus 36 lgivGeSGsGKSTL~r~l~Gl~~p~--~G~I~~~G~~~~~~~~~~~~~~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~-- 111 (252)
T COG1124 36 LGIVGESGSGKSTLARLLAGLEKPS--SGSILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRP-- 111 (252)
T ss_pred EEEEcCCCCCHHHHHHHHhcccCCC--CceEEECCcccCccccchhhccceeEEecCCccccCcchhHHHHHhhhhcc--
Confidence 4899999999999999999998864 59999999887653 3567789999997 589999999999776543
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHH
Q 048028 75 PRSVTKTKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVNVL 154 (592)
Q Consensus 75 ~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l 154 (592)
...++. ++++.++++.+||.+..- ++++.+||||||||++|||||+.+|++|+||||||+||+..+.+|+++|
T Consensus 112 -~~~~~~--~~~i~~~L~~VgL~~~~l----~R~P~eLSGGQ~QRiaIARAL~~~PklLIlDEptSaLD~siQa~IlnlL 184 (252)
T COG1124 112 -HGLSKS--QQRIAELLDQVGLPPSFL----DRRPHELSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQILNLL 184 (252)
T ss_pred -CCccHH--HHHHHHHHHHcCCCHHHH----hcCchhcChhHHHHHHHHHHhccCCCEEEecCchhhhcHHHHHHHHHHH
Confidence 233333 344999999999975321 4567789999999999999999999999999999999999999999999
Q ss_pred HHHHHc-CCEEEEEecCChhHHHhhhceEEEecCCeEeeecChhhHHH
Q 048028 155 QRIAKS-GSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNETPSNLAQ 201 (592)
Q Consensus 155 ~~la~~-g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~~~~~~ 201 (592)
.++.++ +.|.|+++||.+ -+..+|||+++|++|+++..++.+++..
T Consensus 185 ~~l~~~~~lt~l~IsHdl~-~v~~~cdRi~Vm~~G~ivE~~~~~~l~~ 231 (252)
T COG1124 185 LELKKERGLTYLFISHDLA-LVEHMCDRIAVMDNGQIVEIGPTEELLS 231 (252)
T ss_pred HHHHHhcCceEEEEeCcHH-HHHHHhhheeeeeCCeEEEeechhhhhc
Confidence 999875 889999999987 5899999999999999999999988753
No 59
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=100.00 E-value=5.2e-39 Score=316.84 Aligned_cols=183 Identities=28% Similarity=0.474 Sum_probs=159.1
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCcc-cccceeEEEccCCCCCCCCCHHHHHHHHHHccCCCCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLESK-LLKIISAYVMQDDLLFPMLTVEETLMFAAEFRLPRSVT 79 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~~-~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~ 79 (592)
++|+||||||||||+++|+|+.++ .+|+|.++|+++... ..++.++|++|++.+++.+||+||+.+....+ ...
T Consensus 29 ~~l~G~nGsGKSTLl~~l~G~~~~--~~G~v~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~ 103 (213)
T cd03301 29 VVLLGPSGCGKTTTLRMIAGLEEP--TSGRIYIGGRDVTDLPPKDRDIAMVFQNYALYPHMTVYDNIAFGLKLR---KVP 103 (213)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEECCcCCcccceEEEEecChhhccCCCHHHHHHHHHHhc---CCC
Confidence 489999999999999999999875 459999999987532 22456899999999999999999998875443 233
Q ss_pred HHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Q 048028 80 KTKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVNVLQRIAK 159 (592)
Q Consensus 80 ~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~la~ 159 (592)
.++.+++++++++.+|+++..++.+ +.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++
T Consensus 104 ~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qr~~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~ 178 (213)
T cd03301 104 KDEIDERVREVAELLQIEHLLDRKP-----KQLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQ 178 (213)
T ss_pred HHHHHHHHHHHHHHcCCHHHHhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH
Confidence 4455677899999999988776655 45999999999999999999999999999999999999999999999987
Q ss_pred c-CCEEEEEecCChhHHHhhhceEEEecCCeEeeec
Q 048028 160 S-GSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNE 194 (592)
Q Consensus 160 ~-g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g 194 (592)
+ |+|||+++|++. ++.+++|++++|++|++++.|
T Consensus 179 ~~~~tvi~~sH~~~-~~~~~~d~i~~l~~g~~~~~g 213 (213)
T cd03301 179 RLGTTTIYVTHDQV-EAMTMADRIAVMNDGQIQQIG 213 (213)
T ss_pred HcCCEEEEEeCCHH-HHHHhcCeEEEEECCEEEecC
Confidence 5 899999999997 688899999999999998875
No 60
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=6.6e-39 Score=327.36 Aligned_cols=188 Identities=28% Similarity=0.439 Sum_probs=163.3
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCcc---c----ccceeEEEccCCCCCCCCCHHHHHHHHHHcc
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLESK---L----LKIISAYVMQDDLLFPMLTVEETLMFAAEFR 73 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~~---~----~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~ 73 (592)
++|+||||||||||+++|+|+.++. +|+|.++|+++... . .++.++|++|++.+++.+||+||+.+....+
T Consensus 53 ~~l~G~nGsGKSTLl~~L~Gl~~p~--~G~i~i~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~ 130 (269)
T cd03294 53 FVIMGLSGSGKSTLLRCINRLIEPT--SGKVLIDGQDIAAMSRKELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQ 130 (269)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCCC--CeEEEECCEEccccChhhhhhhhcCcEEEEecCcccCCCCcHHHHHHHHHHhc
Confidence 4899999999999999999998754 59999999987531 1 1356899999999999999999999876433
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHH
Q 048028 74 LPRSVTKTKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVNV 153 (592)
Q Consensus 74 ~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~ 153 (592)
.....+..++++++++.+||.+..++.++ .|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.
T Consensus 131 ---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~Gq~qrv~lAral~~~p~illLDEPt~~LD~~~~~~l~~~ 202 (269)
T cd03294 131 ---GVPRAEREERAAEALELVGLEGWEHKYPD-----ELSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRREMQDE 202 (269)
T ss_pred ---CCCHHHHHHHHHHHHHHcCCHhHhhCCcc-----cCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHH
Confidence 12344455778999999999887776654 5999999999999999999999999999999999999999999
Q ss_pred HHHHHHc-CCEEEEEecCChhHHHhhhceEEEecCCeEeeecChhhH
Q 048028 154 LQRIAKS-GSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNETPSNL 199 (592)
Q Consensus 154 l~~la~~-g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~~~~ 199 (592)
|++++++ |+|||+++|+++ ++.+++|++++|++|++++.|+++++
T Consensus 203 l~~~~~~~g~tiii~tH~~~-~~~~~~d~v~~l~~G~i~~~g~~~~~ 248 (269)
T cd03294 203 LLRLQAELQKTIVFITHDLD-EALRLGDRIAIMKDGRLVQVGTPEEI 248 (269)
T ss_pred HHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEECCEEEEeCCHHHH
Confidence 9999864 899999999987 58899999999999999999988765
No 61
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.6e-39 Score=329.38 Aligned_cols=189 Identities=26% Similarity=0.450 Sum_probs=162.3
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCcc-----cccceeEEEccCCC-CCCCCCHHHHHHHHHHccC
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLESK-----LLKIISAYVMQDDL-LFPMLTVEETLMFAAEFRL 74 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~~-----~~~~~~~yv~Q~~~-l~~~lTV~E~l~f~~~l~~ 74 (592)
+||+||||||||||+++|+|+++|. +|+|.++|+++... ..++.+|||+|++. .+...||+||+.|.....
T Consensus 36 ~~i~G~nGaGKSTLl~~l~Gl~~p~--~G~i~~~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~- 112 (287)
T PRK13637 36 VGLIGHTGSGKSTLIQHLNGLLKPT--SGKIIIDGVDITDKKVKLSDIRKKVGLVFQYPEYQLFEETIEKDIAFGPINL- 112 (287)
T ss_pred EEEECCCCCcHHHHHHHHhcCCCCC--ccEEEECCEECCCcCccHHHHhhceEEEecCchhccccccHHHHHHhHHHHC-
Confidence 5899999999999999999998754 59999999987531 34567899999963 333579999999875432
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCc--ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHH
Q 048028 75 PRSVTKTKKQERVEALINQLGLR--SAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVN 152 (592)
Q Consensus 75 ~~~~~~~~~~~~v~~~l~~lgL~--~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~ 152 (592)
..++++.+++++++++.+||. +..|+. ++.||||||||++||+||+.+|++|+|||||+|||+.++..+.+
T Consensus 113 --~~~~~~~~~~~~~~l~~~gL~~~~~~~~~-----~~~LSgGq~qrv~iAraL~~~P~llllDEPt~gLD~~~~~~l~~ 185 (287)
T PRK13637 113 --GLSEEEIENRVKRAMNIVGLDYEDYKDKS-----PFELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILN 185 (287)
T ss_pred --CCCHHHHHHHHHHHHHHcCCCchhhccCC-----cccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHH
Confidence 245566677899999999997 455544 45799999999999999999999999999999999999999999
Q ss_pred HHHHHHHc-CCEEEEEecCChhHHHhhhceEEEecCCeEeeecChhhHH
Q 048028 153 VLQRIAKS-GSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNETPSNLA 200 (592)
Q Consensus 153 ~l~~la~~-g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~~~~~ 200 (592)
.|++++++ |+|||++||+++ ++.++|||+++|++|++++.|+++++.
T Consensus 186 ~l~~l~~~~g~tvi~vtHd~~-~~~~~~drv~~l~~G~i~~~g~~~~~~ 233 (287)
T PRK13637 186 KIKELHKEYNMTIILVSHSME-DVAKLADRIIVMNKGKCELQGTPREVF 233 (287)
T ss_pred HHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 99999875 899999999987 578899999999999999999998864
No 62
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=100.00 E-value=4.6e-39 Score=318.76 Aligned_cols=187 Identities=35% Similarity=0.554 Sum_probs=162.5
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCc--ccccceeEEEccCCCCCCCCCHHHHHHHHHHccCCCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLES--KLLKIISAYVMQDDLLFPMLTVEETLMFAAEFRLPRSV 78 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~--~~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~~~~~ 78 (592)
++|+||||||||||+++|+|+.++ .+|+|.++|+++.. ...++.++|++|++.+++.+||+||+.+....+ ..
T Consensus 31 ~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~---~~ 105 (220)
T cd03263 31 FGLLGHNGAGKTTTLKMLTGELRP--TSGTAYINGYSIRTDRKAARQSLGYCPQFDALFDELTVREHLRFYARLK---GL 105 (220)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEecccchHHHhhhEEEecCcCCccccCCHHHHHHHHHHHc---CC
Confidence 589999999999999999999875 46999999998753 234566899999999999999999998876543 12
Q ss_pred CHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 048028 79 TKTKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVNVLQRIA 158 (592)
Q Consensus 79 ~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~la 158 (592)
+..+.+++++++++.++|.+..++.++ .||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++
T Consensus 106 ~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~ 180 (220)
T cd03263 106 PKSEIKEEVELLLRVLGLTDKANKRAR-----TLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVR 180 (220)
T ss_pred CHHHHHHHHHHHHHHcCCHHHHhChhh-----hCCHHHHHHHHHHHHHhcCCCEEEECCCCCCCCHHHHHHHHHHHHHHh
Confidence 334455678999999999887766554 599999999999999999999999999999999999999999999997
Q ss_pred HcCCEEEEEecCChhHHHhhhceEEEecCCeEeeecChhhH
Q 048028 159 KSGSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNETPSNL 199 (592)
Q Consensus 159 ~~g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~~~~ 199 (592)
+ ++|||+++|+++ .+.+++|++++|++|+++..|+++++
T Consensus 181 ~-~~tii~~sH~~~-~~~~~~d~i~~l~~g~i~~~~~~~~~ 219 (220)
T cd03263 181 K-GRSIILTTHSMD-EAEALCDRIAIMSDGKLRCIGSPQEL 219 (220)
T ss_pred c-CCEEEEEcCCHH-HHHHhcCEEEEEECCEEEecCCHHHc
Confidence 6 589999999997 57889999999999999999988764
No 63
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1.1e-39 Score=315.78 Aligned_cols=192 Identities=29% Similarity=0.496 Sum_probs=170.4
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCccc----ccceeEEEccCCCCCCCCCHHHHHHHHHHcc---
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLESKL----LKIISAYVMQDDLLFPMLTVEETLMFAAEFR--- 73 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~~~----~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~--- 73 (592)
++|+||||||||||+|+|+|.++|+ +|+|.++|++++... .+..++.-+|...+|++|||.||+..++..+
T Consensus 33 ~~LIGPNGAGKTTlfNlitG~~~P~--~G~v~~~G~~it~l~p~~iar~Gi~RTFQ~~rlF~~lTVlENv~va~~~~~~~ 110 (250)
T COG0411 33 VGLIGPNGAGKTTLFNLITGFYKPS--SGTVIFRGRDITGLPPHRIARLGIARTFQITRLFPGLTVLENVAVGAHARLGL 110 (250)
T ss_pred EEEECCCCCCceeeeeeecccccCC--CceEEECCcccCCCCHHHHHhccceeecccccccCCCcHHHHHHHHhhhhhhh
Confidence 5899999999999999999999965 599999999987643 2445788999999999999999999886533
Q ss_pred -----CCC-CCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHH
Q 048028 74 -----LPR-SVTKTKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSA 147 (592)
Q Consensus 74 -----~~~-~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~ 147 (592)
.+. ....++..+++.++|+.+||.+.+|++.|+ ||+|||||+.|||||+.+|++|+||||.+||.+..+
T Consensus 111 ~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~~-----LsyG~qR~LEIArALa~~P~lLLLDEPaAGln~~e~ 185 (250)
T COG0411 111 SGLLGRPRARKEEREARERARELLEFVGLGELADRPAGN-----LSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEET 185 (250)
T ss_pred hhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhhc-----CChhHhHHHHHHHHHhcCCCEEEecCccCCCCHHHH
Confidence 111 113455678899999999999999988775 999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHc-CCEEEEEecCChhHHHhhhceEEEecCCeEeeecChhhHH
Q 048028 148 FMVVNVLQRIAKS-GSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNETPSNLA 200 (592)
Q Consensus 148 ~~i~~~l~~la~~-g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~~~~~ 200 (592)
.++.+.|++++++ |.||+++.|+++ -+..+||||++|+.|+++.+|+|+++.
T Consensus 186 ~~l~~~i~~i~~~~g~tillIEHdM~-~Vm~l~dri~Vl~~G~~IAeG~P~eV~ 238 (250)
T COG0411 186 EELAELIRELRDRGGVTILLIEHDMK-LVMGLADRIVVLNYGEVIAEGTPEEVR 238 (250)
T ss_pred HHHHHHHHHHHhcCCcEEEEEEeccH-HHhhhccEEEeccCCcCcccCCHHHHh
Confidence 9999999999984 699999999998 599999999999999999999999874
No 64
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=6.9e-39 Score=322.30 Aligned_cols=188 Identities=30% Similarity=0.530 Sum_probs=163.0
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCc---ccccceeEEEccCCCCCCCCCHHHHHHHHHHccCCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLES---KLLKIISAYVMQDDLLFPMLTVEETLMFAAEFRLPRS 77 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~---~~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~~~~ 77 (592)
++|+|||||||||||++|+|+.++. +|+|.++|+++.. ...++.++|++|++.+++.+||+||+.+...++ .
T Consensus 30 ~~i~G~nGsGKSTLl~~l~G~~~~~--~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~ 104 (242)
T cd03295 30 LVLIGPSGSGKTTTMKMINRLIEPT--SGEIFIDGEDIREQDPVELRRKIGYVIQQIGLFPHMTVEENIALVPKLL---K 104 (242)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCCC--CceEEECCeEcCcCChHHhhcceEEEccCccccCCCcHHHHHHHHHHHc---C
Confidence 4899999999999999999998754 5999999998753 234567899999999999999999998875543 2
Q ss_pred CCHHHHHHHHHHHHHHcCCcc--cccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHH
Q 048028 78 VTKTKKQERVEALINQLGLRS--AAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVNVLQ 155 (592)
Q Consensus 78 ~~~~~~~~~v~~~l~~lgL~~--~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~ 155 (592)
.+.++..++++++++.+||.+ ..++. ++.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+
T Consensus 105 ~~~~~~~~~~~~~l~~l~l~~~~~~~~~-----~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~L~ 179 (242)
T cd03295 105 WPKEKIRERADELLALVGLDPAEFADRY-----PHELSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQEEFK 179 (242)
T ss_pred CCHHHHHHHHHHHHHHcCCCcHHHHhcC-----hhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHH
Confidence 234455677899999999985 55544 45699999999999999999999999999999999999999999999
Q ss_pred HHHHc-CCEEEEEecCChhHHHhhhceEEEecCCeEeeecChhhH
Q 048028 156 RIAKS-GSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNETPSNL 199 (592)
Q Consensus 156 ~la~~-g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~~~~ 199 (592)
+++++ |+|||+++|+++ ++.+++|++++|++|++++.|+++++
T Consensus 180 ~~~~~~g~tvii~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~ 223 (242)
T cd03295 180 RLQQELGKTIVFVTHDID-EAFRLADRIAIMKNGEIVQVGTPDEI 223 (242)
T ss_pred HHHHHcCCEEEEEecCHH-HHHHhCCEEEEEECCEEEEecCHHHH
Confidence 99875 899999999997 68899999999999999999988765
No 65
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=100.00 E-value=6.4e-39 Score=335.64 Aligned_cols=187 Identities=30% Similarity=0.465 Sum_probs=164.6
Q ss_pred EECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCcc-cccceeEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHH
Q 048028 3 ILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLESK-LLKIISAYVMQDDLLFPMLTVEETLMFAAEFRLPRSVTKT 81 (592)
Q Consensus 3 I~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~~-~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~ 81 (592)
|+||||||||||||+|+|+.++. +|+|.++|+++... ..++.++|++|+..+++++||+||+.|..+.+ ..++.
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p~--~G~I~i~g~~i~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~---~~~~~ 75 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPD--SGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVEENVAFGLKMR---KVPRA 75 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCCC--ceEEEECCEECCCCCHHHCCEEEEecCccccCCCcHHHHHHHHHhhc---CCCHH
Confidence 68999999999999999998754 59999999987542 23566899999999999999999999986543 23445
Q ss_pred HHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-
Q 048028 82 KKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVNVLQRIAKS- 160 (592)
Q Consensus 82 ~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~la~~- 160 (592)
+.+++++++++.++|++..++.+ +.|||||||||+|||+|+.+|++|+|||||+|||+.++..+.+.|++++++
T Consensus 76 ~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~~~ 150 (325)
T TIGR01187 76 EIKPRVLEALRLVQLEEFADRKP-----HQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQL 150 (325)
T ss_pred HHHHHHHHHHHHcCCcchhcCCh-----hhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhc
Confidence 55678999999999988776554 569999999999999999999999999999999999999999999999875
Q ss_pred CCEEEEEecCChhHHHhhhceEEEecCCeEeeecChhhHH
Q 048028 161 GSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNETPSNLA 200 (592)
Q Consensus 161 g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~~~~~ 200 (592)
|+|+|++||+++ ++.+++||+++|++|+++..|+++++.
T Consensus 151 g~tiiivTHd~~-e~~~~~d~i~vl~~G~i~~~g~~~~~~ 189 (325)
T TIGR01187 151 GITFVFVTHDQE-EAMTMSDRIAIMRKGKIAQIGTPEEIY 189 (325)
T ss_pred CCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 899999999997 688999999999999999999998774
No 66
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=100.00 E-value=5.1e-39 Score=317.99 Aligned_cols=178 Identities=31% Similarity=0.521 Sum_probs=153.5
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCccc-------ccceeEEEccCCCCCCCCCHHHHHHHHHHcc
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLESKL-------LKIISAYVMQDDLLFPMLTVEETLMFAAEFR 73 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~~~-------~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~ 73 (592)
++|+||||||||||+++|+|++++ .+|+|.++|+++.... .++.++|++|++.+++.+||+||+.+....+
T Consensus 33 ~~l~G~nGsGKSTLl~~i~Gl~~~--~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~ 110 (218)
T cd03255 33 VAIVGPSGSGKSTLLNILGGLDRP--TSGEVRVDGTDISKLSEKELAAFRRRHIGFVFQSFNLLPDLTALENVELPLLLA 110 (218)
T ss_pred EEEEcCCCCCHHHHHHHHhCCcCC--CceeEEECCEehhhcchhHHHHHHhhcEEEEeeccccCCCCcHHHHHHHHHhhc
Confidence 489999999999999999999875 4599999999875321 2456899999999999999999999876543
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHH
Q 048028 74 LPRSVTKTKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVNV 153 (592)
Q Consensus 74 ~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~ 153 (592)
.....+.+++++++++.+||++..++.+ +.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.
T Consensus 111 ---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~ 182 (218)
T cd03255 111 ---GVPKKERRERAEELLERVGLGDRLNHYP-----SELSGGQQQRVAIARALANDPKIILADEPTGNLDSETGKEVMEL 182 (218)
T ss_pred ---CCCHHHHHHHHHHHHHHcCCchhhhcCh-----hhcCHHHHHHHHHHHHHccCCCEEEEcCCcccCCHHHHHHHHHH
Confidence 1233445567899999999987776554 46999999999999999999999999999999999999999999
Q ss_pred HHHHHH-cCCEEEEEecCChhHHHhhhceEEEecCCeE
Q 048028 154 LQRIAK-SGSIVIMSIHQPSYRILSLLDRLIILSHGQS 190 (592)
Q Consensus 154 l~~la~-~g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~ 190 (592)
|+++++ +|+|||+++|+++ ++. .||++++|++|++
T Consensus 183 l~~~~~~~~~tii~~sH~~~-~~~-~~d~v~~l~~G~i 218 (218)
T cd03255 183 LRELNKEAGTTIVVVTHDPE-LAE-YADRIIELRDGKI 218 (218)
T ss_pred HHHHHHhcCCeEEEEECCHH-HHh-hhcEEEEeeCCcC
Confidence 999987 5899999999997 465 9999999999974
No 67
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.6e-39 Score=341.04 Aligned_cols=189 Identities=26% Similarity=0.423 Sum_probs=165.5
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCcc---c----ccceeEEEccCCCCCCCCCHHHHHHHHHHcc
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLESK---L----LKIISAYVMQDDLLFPMLTVEETLMFAAEFR 73 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~~---~----~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~ 73 (592)
++|+||||||||||||+|+|+++|. +|+|.++|+++... . .++.++|++|+..+++++||+||+.+....+
T Consensus 57 ~~LvG~NGsGKSTLLr~I~Gl~~p~--sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~Tv~enl~~~~~~~ 134 (400)
T PRK10070 57 FVIMGLSGSGKSTMVRLLNRLIEPT--RGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHMTVLDNTAFGMELA 134 (400)
T ss_pred EEEECCCCchHHHHHHHHHcCCCCC--CCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCCCHHHHHHHHHHhc
Confidence 4899999999999999999998854 59999999987532 1 1356899999999999999999999986543
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHH
Q 048028 74 LPRSVTKTKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVNV 153 (592)
Q Consensus 74 ~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~ 153 (592)
..+.++.+++++++++.+||++..++.+ +.|||||||||+|||+|+.+|++|||||||+|||+.++..+.+.
T Consensus 135 ---~~~~~~~~~~~~e~L~~~gL~~~~~~~~-----~~LSgGq~QRv~LArAL~~~P~iLLLDEPts~LD~~~r~~l~~~ 206 (400)
T PRK10070 135 ---GINAEERREKALDALRQVGLENYAHSYP-----DELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDE 206 (400)
T ss_pred ---CCCHHHHHHHHHHHHHHcCCChhhhcCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHH
Confidence 2344556678999999999988776554 56999999999999999999999999999999999999999999
Q ss_pred HHHHHH-cCCEEEEEecCChhHHHhhhceEEEecCCeEeeecChhhHH
Q 048028 154 LQRIAK-SGSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNETPSNLA 200 (592)
Q Consensus 154 l~~la~-~g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~~~~~ 200 (592)
|+++++ .|+|||++||+++ ++.+++|++++|++|+++..|+++++.
T Consensus 207 L~~l~~~~g~TIIivTHd~~-~~~~~~Dri~vL~~G~i~~~g~~~~l~ 253 (400)
T PRK10070 207 LVKLQAKHQRTIVFISHDLD-EAMRIGDRIAIMQNGEVVQVGTPDEIL 253 (400)
T ss_pred HHHHHHHCCCeEEEEECCHH-HHHHhCCEEEEEECCEEEecCCHHHHH
Confidence 999976 4899999999997 688999999999999999999987763
No 68
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=100.00 E-value=4.6e-39 Score=320.41 Aligned_cols=188 Identities=25% Similarity=0.368 Sum_probs=159.8
Q ss_pred CEEECCCCCcHHHHHHHHhCCC-----CCCCceeEEEECCEecCc-----ccccceeEEEccCCCCCCCCCHHHHHHHHH
Q 048028 1 MAILGASGAGKTTLMDALAGRI-----EKESLQGAVTLNGEVLES-----KLLKIISAYVMQDDLLFPMLTVEETLMFAA 70 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~-----~~~~~~G~I~i~g~~~~~-----~~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~ 70 (592)
++|+||||||||||+|+|+|+. ++ .+|+|.++|+++.. ...++.++|++|++.++ .+||+||+.+..
T Consensus 29 ~~i~G~nGsGKSTLl~~i~G~~~~~~~~~--~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~-~~tv~e~l~~~~ 105 (227)
T cd03260 29 TALIGPSGCGKSTLLRLLNRLNDLIPGAP--DEGEVLLDGKDIYDLDVDVLELRRRVGMVFQKPNPF-PGSIYDNVAYGL 105 (227)
T ss_pred EEEECCCCCCHHHHHHHHHhhcccccCCC--CCeEEEECCEEhhhcchHHHHHHhhEEEEecCchhc-cccHHHHHHhHH
Confidence 4899999999999999999998 54 46999999998743 23456789999999888 799999998876
Q ss_pred HccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHH
Q 048028 71 EFRLPRSVTKTKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMV 150 (592)
Q Consensus 71 ~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i 150 (592)
..+. ...+.+.+++++++++.+|+.+..+..+. +++||||||||++||++|+.+|++|+|||||+|||+.++..+
T Consensus 106 ~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l 180 (227)
T cd03260 106 RLHG--IKLKEELDERVEEALRKAALWDEVKDRLH---ALGLSGGQQQRLCLARALANEPEVLLLDEPTSALDPISTAKI 180 (227)
T ss_pred HhcC--CCcHHHHHHHHHHHHHHcCCChHHhccCC---cccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHH
Confidence 5431 11222345778999999999876655430 357999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCEEEEEecCChhHHHhhhceEEEecCCeEeeecChhh
Q 048028 151 VNVLQRIAKSGSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNETPSN 198 (592)
Q Consensus 151 ~~~l~~la~~g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~~~ 198 (592)
.+.|++++++ +|||+++|+++ ++.++||++++|++|++++.|++++
T Consensus 181 ~~~l~~~~~~-~tii~~sH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~ 226 (227)
T cd03260 181 EELIAELKKE-YTIVIVTHNMQ-QAARVADRTAFLLNGRLVEFGPTEQ 226 (227)
T ss_pred HHHHHHHhhC-cEEEEEeccHH-HHHHhCCEEEEEeCCEEEEecCccc
Confidence 9999999887 99999999997 6888999999999999999998765
No 69
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=8.9e-39 Score=321.06 Aligned_cols=189 Identities=29% Similarity=0.497 Sum_probs=163.4
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCc-----ccccceeEEEccCCCCCCCCCHHHHHHHHHHccCC
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLES-----KLLKIISAYVMQDDLLFPMLTVEETLMFAAEFRLP 75 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~-----~~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~~ 75 (592)
++|+||||||||||+++|+|..++ .+|+|.++|+++.. ...++.++|++|++.+++.+||+||+.+.....
T Consensus 30 ~~l~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~-- 105 (240)
T PRK09493 30 VVIIGPSGSGKSTLLRCINKLEEI--TSGDLIVDGLKVNDPKVDERLIRQEAGMVFQQFYLFPHLTALENVMFGPLRV-- 105 (240)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEECCcCChhHHHHhhceEEEecccccCCCCcHHHHHHhHHHHh--
Confidence 489999999999999999999875 45999999998753 133567899999999999999999998764211
Q ss_pred CCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHH
Q 048028 76 RSVTKTKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVNVLQ 155 (592)
Q Consensus 76 ~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~ 155 (592)
......+.+++++++++.+||++..+..+ +.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+
T Consensus 106 ~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~ 180 (240)
T PRK09493 106 RGASKEEAEKQARELLAKVGLAERAHHYP-----SELSGGQQQRVAIARALAVKPKLMLFDEPTSALDPELRHEVLKVMQ 180 (240)
T ss_pred cCCCHHHHHHHHHHHHHHcCChHHHhcCh-----hhcCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHH
Confidence 12334455677899999999987766554 4699999999999999999999999999999999999999999999
Q ss_pred HHHHcCCEEEEEecCChhHHHhhhceEEEecCCeEeeecChhhH
Q 048028 156 RIAKSGSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNETPSNL 199 (592)
Q Consensus 156 ~la~~g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~~~~ 199 (592)
+++++|+|+|+++|+++ ++.++||++++|++|++++.|+++++
T Consensus 181 ~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~ 223 (240)
T PRK09493 181 DLAEEGMTMVIVTHEIG-FAEKVASRLIFIDKGRIAEDGDPQVL 223 (240)
T ss_pred HHHHcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEeeCCHHHH
Confidence 99877999999999997 58889999999999999999988765
No 70
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=100.00 E-value=6.5e-39 Score=318.06 Aligned_cols=186 Identities=28% Similarity=0.507 Sum_probs=159.6
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCccc----ccceeEEEccCCCCCCCCCHHHHHHHHHHccCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLESKL----LKIISAYVMQDDLLFPMLTVEETLMFAAEFRLPR 76 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~~~----~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~~~ 76 (592)
++|+|||||||||||++|+|+.++. +|+|.++|+++.... .++.++|++|++.+++.+|++||+.+......
T Consensus 29 ~~i~G~nGsGKSTLl~~l~Gl~~~~--~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~-- 104 (222)
T cd03224 29 VALLGRNGAGKTTLLKTIMGLLPPR--SGSIRFDGRDITGLPPHERARAGIGYVPEGRRIFPELTVEENLLLGAYARR-- 104 (222)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCCC--CceEEECCEEcCCCCHHHHHhcCeEEeccccccCCCCcHHHHHHHHhhhcC--
Confidence 4899999999999999999998754 599999999875321 24568999999999999999999988754321
Q ss_pred CCCHHHHHHHHHHHHHHc-CCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHH
Q 048028 77 SVTKTKKQERVEALINQL-GLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVNVLQ 155 (592)
Q Consensus 77 ~~~~~~~~~~v~~~l~~l-gL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~ 155 (592)
..+.+++++++++.+ ++.+..++.+ +.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+
T Consensus 105 ---~~~~~~~~~~~l~~~~~l~~~~~~~~-----~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~ 176 (222)
T cd03224 105 ---RAKRKARLERVYELFPRLKERRKQLA-----GTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIR 176 (222)
T ss_pred ---chhHHHHHHHHHHHHHhhhhhhhCch-----hhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHH
Confidence 223445677888888 5776665554 4699999999999999999999999999999999999999999999
Q ss_pred HHHHcCCEEEEEecCChhHHHhhhceEEEecCCeEeeecChhhH
Q 048028 156 RIAKSGSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNETPSNL 199 (592)
Q Consensus 156 ~la~~g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~~~~ 199 (592)
+++++|+|||+++|+++ ++.+++|++++|++|+++..|+++++
T Consensus 177 ~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~ 219 (222)
T cd03224 177 ELRDEGVTILLVEQNAR-FALEIADRAYVLERGRVVLEGTAAEL 219 (222)
T ss_pred HHHHCCCEEEEEeCCHH-HHHHhccEEEEeeCCeEEEeCCHHHH
Confidence 99878899999999997 68899999999999999999988765
No 71
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=8.1e-40 Score=319.48 Aligned_cols=183 Identities=30% Similarity=0.502 Sum_probs=163.9
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCc-------ccccceeEEEccCCCCCCCCCHHHHHHHHHHcc
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLES-------KLLKIISAYVMQDDLLFPMLTVEETLMFAAEFR 73 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~-------~~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~ 73 (592)
+||-|+||||||||+|+|+|+.+|+ +|.|.+||+.+.+ ...+|++|||+||..|||++||+.||.|+....
T Consensus 27 TAlFG~SGsGKTslin~IaGL~rPd--eG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~tVrgNL~YG~~~~ 104 (352)
T COG4148 27 TALFGPSGSGKTSLINMIAGLTRPD--EGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYTVRGNLRYGMWKS 104 (352)
T ss_pred EEEecCCCCChhhHHHHHhccCCcc--ccEEEECCEEeecccCCcccChhhheeeeEeeccccccceEEecchhhhhccc
Confidence 5899999999999999999999865 5999999986632 234678999999999999999999999985421
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHH
Q 048028 74 LPRSVTKTKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVNV 153 (592)
Q Consensus 74 ~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~ 153 (592)
.....+++.+.||++|..+.+. ..|||||||||+|+|||+++|++|++|||.+.||-..+.+++..
T Consensus 105 ---------~~~~fd~iv~lLGI~hLL~R~P-----~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSLD~~RK~Eilpy 170 (352)
T COG4148 105 ---------MRAQFDQLVALLGIEHLLDRYP-----GTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPY 170 (352)
T ss_pred ---------chHhHHHHHHHhCcHHHHhhCC-----CccCcchhhHHHHHHHHhcCCCeeeecCchhhcccchhhHHHHH
Confidence 3456889999999999987654 56999999999999999999999999999999999999999999
Q ss_pred HHHHHHc-CCEEEEEecCChhHHHhhhceEEEecCCeEeeecChhhHH
Q 048028 154 LQRIAKS-GSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNETPSNLA 200 (592)
Q Consensus 154 l~~la~~-g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~~~~~ 200 (592)
|++|+++ +..|+.++|.+. |+.+++|+|++|++|++..+|+.+++.
T Consensus 171 lERL~~e~~IPIlYVSHS~~-Ev~RLAd~vV~le~GkV~A~g~~e~v~ 217 (352)
T COG4148 171 LERLRDEINIPILYVSHSLD-EVLRLADRVVVLENGKVKASGPLEEVW 217 (352)
T ss_pred HHHHHHhcCCCEEEEecCHH-HHHhhhheEEEecCCeEEecCcHHHHh
Confidence 9999987 677999999997 899999999999999999999998874
No 72
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=100.00 E-value=4.8e-39 Score=323.49 Aligned_cols=191 Identities=30% Similarity=0.440 Sum_probs=160.6
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCcc------cccceeEEEccCCCCCCCCCHHHHHHHHHHccC
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLESK------LLKIISAYVMQDDLLFPMLTVEETLMFAAEFRL 74 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~~------~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~ 74 (592)
++|+||||||||||+++|+|+.++ .+|+|.++|+++... ..++.++|++|++.+++.+||+||+.+......
T Consensus 31 ~~l~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~ 108 (243)
T TIGR02315 31 VAIIGPSGAGKSTLLRCINRLVEP--SSGSILLEGTDITKLRGKKLRKLRRRIGMIFQHYNLIERLTVLENVLHGRLGYK 108 (243)
T ss_pred EEEECCCCCCHHHHHHHHhCCcCC--CccEEEECCEEhhhCCHHHHHHHHhheEEEcCCCcccccccHHHHHhhcccccc
Confidence 489999999999999999999875 459999999987531 235678999999999999999999976532100
Q ss_pred -----CCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHH
Q 048028 75 -----PRSVTKTKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFM 149 (592)
Q Consensus 75 -----~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~ 149 (592)
.......+.+++++++++.+||.+..++.+ +.|||||||||+||++|+.+|++|+|||||+|||+.++..
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~ 183 (243)
T TIGR02315 109 PTWRSLLGRFSEEDKERALSALERVGLADKAYQRA-----DQLSGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQ 183 (243)
T ss_pred cchhhhhccccHHHHHHHHHHHHHcCcHhhhcCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHH
Confidence 001112344567899999999987766544 5699999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHc-CCEEEEEecCChhHHHhhhceEEEecCCeEeeecChhhH
Q 048028 150 VVNVLQRIAKS-GSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNETPSNL 199 (592)
Q Consensus 150 i~~~l~~la~~-g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~~~~ 199 (592)
+.+.|++++++ |+|||+++|+++ ++.++||++++|++|++++.|+++++
T Consensus 184 l~~~l~~~~~~~~~tiii~tH~~~-~~~~~~d~v~~l~~G~i~~~~~~~~~ 233 (243)
T TIGR02315 184 VMDYLKRINKEDGITVIINLHQVD-LAKKYADRIVGLKAGEIVFDGAPSEL 233 (243)
T ss_pred HHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCeEEEEECCEEEecCCHHHh
Confidence 99999999764 899999999997 57889999999999999999988764
No 73
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=100.00 E-value=1.2e-38 Score=321.95 Aligned_cols=189 Identities=27% Similarity=0.436 Sum_probs=162.6
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCc-----------ccccceeEEEccCCCCCCCCCHHHHHHHH
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLES-----------KLLKIISAYVMQDDLLFPMLTVEETLMFA 69 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~-----------~~~~~~~~yv~Q~~~l~~~lTV~E~l~f~ 69 (592)
++|+||||||||||+++|+|+.++ .+|+|.++|+++.. ...++.++|++|++.+++.+||+||+.+.
T Consensus 32 ~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~ 109 (250)
T PRK11264 32 VAIIGPSGSGKTTLLRCINLLEQP--EAGTIRVGDITIDTARSLSQQKGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEG 109 (250)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCC--CCeEEEECCEEccccccccchhhHHHHhhhhEEEEecCcccCCCCCHHHHHHHH
Confidence 589999999999999999999875 45999999998742 12355789999999999999999999875
Q ss_pred HHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHH
Q 048028 70 AEFRLPRSVTKTKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFM 149 (592)
Q Consensus 70 ~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~ 149 (592)
..... .....+.+++++++++.+||++..|+.+ +.|||||||||+||++|+.+|++|+|||||+|||+.++..
T Consensus 110 ~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~Gq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~ 182 (250)
T PRK11264 110 PVIVK--GEPKEEATARARELLAKVGLAGKETSYP-----RRLSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGE 182 (250)
T ss_pred HHHhc--CCCHHHHHHHHHHHHHHcCCcchhhCCh-----hhCChHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHH
Confidence 43211 1234445677899999999987666544 5699999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCEEEEEecCChhHHHhhhceEEEecCCeEeeecChhhH
Q 048028 150 VVNVLQRIAKSGSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNETPSNL 199 (592)
Q Consensus 150 i~~~l~~la~~g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~~~~ 199 (592)
+.+.|++++++|+|||+++|+++ ++.+++|++++|++|++++.|+++++
T Consensus 183 l~~~l~~~~~~~~tvi~~tH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~ 231 (250)
T PRK11264 183 VLNTIRQLAQEKRTMVIVTHEMS-FARDVADRAIFMDQGRIVEQGPAKAL 231 (250)
T ss_pred HHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEECCEEEEeCCHHHH
Confidence 99999999888999999999987 68889999999999999999998765
No 74
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=100.00 E-value=1.3e-38 Score=317.00 Aligned_cols=189 Identities=47% Similarity=0.788 Sum_probs=159.3
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCC-CCceeEEEECCEecCcccccceeEEEccCCCCCCCCCHHHHHHHHHHccCCCCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRIEK-ESLQGAVTLNGEVLESKLLKIISAYVMQDDLLFPMLTVEETLMFAAEFRLPRSVT 79 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~-~~~~G~I~i~g~~~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~ 79 (592)
++|+||||||||||+|+|+|+.++ .+.+|+|.++|+++.....++.++|++|++.+++.+||+||+.+.+....+....
T Consensus 36 ~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~ 115 (226)
T cd03234 36 MAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQFQKCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSS 115 (226)
T ss_pred EEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECChHHhcccEEEeCCCCccCcCCcHHHHHHHHHHhhcccccc
Confidence 489999999999999999999861 1246999999998865556677999999999999999999999876543322222
Q ss_pred HHHHHHHHHH-HHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 048028 80 KTKKQERVEA-LINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVNVLQRIA 158 (592)
Q Consensus 80 ~~~~~~~v~~-~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~la 158 (592)
+....+++++ .++.+++.+..++. ++.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|++++
T Consensus 116 ~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrl~laral~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~ 190 (226)
T cd03234 116 DAIRKKRVEDVLLRDLALTRIGGNL-----VKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLA 190 (226)
T ss_pred hHHHHHHHHHHHHHhhcchhhhccc-----ccCcCHHHHHHHHHHHHHHhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHH
Confidence 2233345565 89999998766554 45699999999999999999999999999999999999999999999998
Q ss_pred HcCCEEEEEecCChhHHHhhhceEEEecCCeEeeec
Q 048028 159 KSGSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNE 194 (592)
Q Consensus 159 ~~g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g 194 (592)
++|.|+|+++|++..++.++||++++|++|++++.|
T Consensus 191 ~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~g 226 (226)
T cd03234 191 RRNRIVILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226 (226)
T ss_pred HCCCEEEEEecCCCHHHHHhCCEEEEEeCCEEEecC
Confidence 778999999999854689999999999999998765
No 75
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=100.00 E-value=6.5e-39 Score=342.19 Aligned_cols=191 Identities=26% Similarity=0.415 Sum_probs=165.1
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCc---ccccceeEEEccCCCCCCCCCHHHHHHHHHHccCCC-
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLES---KLLKIISAYVMQDDLLFPMLTVEETLMFAAEFRLPR- 76 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~---~~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~~~- 76 (592)
++|+||||||||||||+|+|+++|. +|+|.++|+++.. ...++.+|||+|+..+++.+||+||+.++.......
T Consensus 32 v~liGpNGaGKSTLLk~LaGll~p~--sG~I~l~G~~i~~~~~~~~~~~ig~v~q~~~l~~~~tv~e~v~~~~~~~~~~~ 109 (402)
T PRK09536 32 VGLVGPNGAGKTTLLRAINGTLTPT--AGTVLVAGDDVEALSARAASRRVASVPQDTSLSFEFDVRQVVEMGRTPHRSRF 109 (402)
T ss_pred EEEECCCCchHHHHHHHHhcCCCCC--CcEEEECCEEcCcCCHHHHhcceEEEccCCCCCCCCCHHHHHHhccchhcccc
Confidence 4899999999999999999998854 5999999998754 345677999999999999999999998864211100
Q ss_pred CCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHH
Q 048028 77 SVTKTKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVNVLQR 156 (592)
Q Consensus 77 ~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~ 156 (592)
.....+.+++++++++.+|+.+..++.+ +.|||||||||.|||+|+++|++|||||||+|||+.++.++++.|++
T Consensus 110 ~~~~~~~~~~v~~~le~vgl~~~~~~~~-----~~LSgGerQRv~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~ 184 (402)
T PRK09536 110 DTWTETDRAAVERAMERTGVAQFADRPV-----TSLSGGERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVRR 184 (402)
T ss_pred cCCCHHHHHHHHHHHHHcCCchhhcCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHH
Confidence 1112345678999999999998877655 46999999999999999999999999999999999999999999999
Q ss_pred HHHcCCEEEEEecCChhHHHhhhceEEEecCCeEeeecChhhH
Q 048028 157 IAKSGSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNETPSNL 199 (592)
Q Consensus 157 la~~g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~~~~ 199 (592)
++++|+|||+++|+++ ++.++|||+++|++|++++.|+++++
T Consensus 185 l~~~g~TIIivsHdl~-~~~~~adrii~l~~G~iv~~G~~~ev 226 (402)
T PRK09536 185 LVDDGKTAVAAIHDLD-LAARYCDELVLLADGRVRAAGPPADV 226 (402)
T ss_pred HHhcCCEEEEEECCHH-HHHHhCCEEEEEECCEEEEecCHHHH
Confidence 9888999999999997 68899999999999999999999874
No 76
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.5e-38 Score=325.52 Aligned_cols=188 Identities=27% Similarity=0.366 Sum_probs=161.8
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCc---ccccceeEEEccCCC-CCCCCCHHHHHHHHHHccCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLES---KLLKIISAYVMQDDL-LFPMLTVEETLMFAAEFRLPR 76 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~---~~~~~~~~yv~Q~~~-l~~~lTV~E~l~f~~~l~~~~ 76 (592)
++|+||||||||||+++|+|+.+|. +|+|.++|+++.. ...++.++|++|++. .++..||.||+.|.....
T Consensus 34 ~~i~G~nGsGKSTLl~~l~Gl~~p~--~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~--- 108 (274)
T PRK13647 34 TALLGPNGAGKSTLLLHLNGIYLPQ--RGRVKVMGREVNAENEKWVRSKVGLVFQDPDDQVFSSTVWDDVAFGPVNM--- 108 (274)
T ss_pred EEEECCCCCcHHHHHHHHhcCCCCC--ceEEEECCEECCCCCHHHHHhhEEEEecChhhhhccCcHHHHHHhhHHHc---
Confidence 5899999999999999999998754 5999999998753 233566899999963 445679999999875422
Q ss_pred CCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHH
Q 048028 77 SVTKTKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVNVLQR 156 (592)
Q Consensus 77 ~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~ 156 (592)
..++.+.+++++++++.+||.+..++.+ ..|||||||||+||+||+.+|++|+|||||+|||+.++.++.+.|++
T Consensus 109 ~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----~~LSgG~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~ 183 (274)
T PRK13647 109 GLDKDEVERRVEEALKAVRMWDFRDKPP-----YHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDR 183 (274)
T ss_pred CCCHHHHHHHHHHHHHHCCCHHHhcCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHH
Confidence 2344555677899999999987776655 46999999999999999999999999999999999999999999999
Q ss_pred HHHcCCEEEEEecCChhHHHhhhceEEEecCCeEeeecChhhH
Q 048028 157 IAKSGSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNETPSNL 199 (592)
Q Consensus 157 la~~g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~~~~ 199 (592)
++++|+|||++||+++ ++.++|||+++|++|++++.|+++++
T Consensus 184 ~~~~g~tili~tH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~ 225 (274)
T PRK13647 184 LHNQGKTVIVATHDVD-LAAEWADQVIVLKEGRVLAEGDKSLL 225 (274)
T ss_pred HHHCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEECCHHHh
Confidence 9877999999999987 57889999999999999999998654
No 77
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=5.3e-39 Score=315.02 Aligned_cols=176 Identities=32% Similarity=0.475 Sum_probs=151.3
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCcccccceeEEEccCCC-CCCCCCHHHHHHHHHHccCCCCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLESKLLKIISAYVMQDDL-LFPMLTVEETLMFAAEFRLPRSVT 79 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~~~~~~~~~yv~Q~~~-l~~~lTV~E~l~f~~~l~~~~~~~ 79 (592)
++|+|||||||||||++|+|+.+| .+|+|.++|+++.....++.++|++|++. .+..+||+||+.+..... .
T Consensus 29 ~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~-----~ 101 (205)
T cd03226 29 IALTGKNGAGKTTLAKILAGLIKE--SSGSILLNGKPIKAKERRKSIGYVMQDVDYQLFTDSVREELLLGLKEL-----D 101 (205)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCC--CceEEEECCEEhhhHHhhcceEEEecChhhhhhhccHHHHHhhhhhhc-----C
Confidence 489999999999999999999875 45999999998754445567899999974 344679999998765322 1
Q ss_pred HHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Q 048028 80 KTKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVNVLQRIAK 159 (592)
Q Consensus 80 ~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~la~ 159 (592)
+.+++++++++.+||.+..++.+ +.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++
T Consensus 102 --~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~ 174 (205)
T cd03226 102 --AGNEQAETVLKDLDLYALKERHP-----LSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRELAA 174 (205)
T ss_pred --ccHHHHHHHHHHcCCchhcCCCc-----hhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHH
Confidence 12356889999999988776655 46999999999999999999999999999999999999999999999988
Q ss_pred cCCEEEEEecCChhHHHhhhceEEEecCCeEe
Q 048028 160 SGSIVIMSIHQPSYRILSLLDRLIILSHGQSV 191 (592)
Q Consensus 160 ~g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v 191 (592)
+|+|+|+++|+++ ++.+++|++++|++|+++
T Consensus 175 ~~~tii~~sH~~~-~~~~~~d~i~~l~~G~iv 205 (205)
T cd03226 175 QGKAVIVITHDYE-FLAKVCDRVLLLANGAIV 205 (205)
T ss_pred CCCEEEEEeCCHH-HHHHhCCEEEEEECCEEC
Confidence 8999999999997 588899999999999875
No 78
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=100.00 E-value=5.4e-39 Score=315.65 Aligned_cols=179 Identities=28% Similarity=0.483 Sum_probs=156.0
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCc-ccccceeEEEccCCCCCCCCCHHHHHHHHHHccCCCCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLES-KLLKIISAYVMQDDLLFPMLTVEETLMFAAEFRLPRSVT 79 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~-~~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~ 79 (592)
++|+|||||||||||++|+|+.++ .+|+|.++|+++.. ...++.++|++|++.+++.+||+||+.+....+. .
T Consensus 29 ~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~---~- 102 (208)
T cd03268 29 YGFLGPNGAGKTTTMKIILGLIKP--DSGEITFDGKSYQKNIEALRRIGALIEAPGFYPNLTARENLRLLARLLG---I- 102 (208)
T ss_pred EEEECCCCCCHHHHHHHHhCCcCC--CceEEEECCCcccchHHHHhhEEEecCCCccCccCcHHHHHHHHHHhcC---C-
Confidence 489999999999999999999875 46999999987653 2345668999999999999999999988754321 1
Q ss_pred HHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Q 048028 80 KTKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVNVLQRIAK 159 (592)
Q Consensus 80 ~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~la~ 159 (592)
.+++++++++.+++++..++.+ +.|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++++
T Consensus 103 ---~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~ 174 (208)
T cd03268 103 ---RKKRIDEVLDVVGLKDSAKKKV-----KGFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRD 174 (208)
T ss_pred ---cHHHHHHHHHHcCCHHHHhhhH-----hhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHH
Confidence 2456889999999988776655 45999999999999999999999999999999999999999999999988
Q ss_pred cCCEEEEEecCChhHHHhhhceEEEecCCeEeeec
Q 048028 160 SGSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNE 194 (592)
Q Consensus 160 ~g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g 194 (592)
+|+|+|+++|++. ++.+++|++++|++|++++.|
T Consensus 175 ~~~tii~~tH~~~-~~~~~~d~v~~l~~g~i~~~g 208 (208)
T cd03268 175 QGITVLISSHLLS-EIQKVADRIGIINKGKLIEEG 208 (208)
T ss_pred CCCEEEEEcCCHH-HHHHhcCEEEEEECCEEEecC
Confidence 8899999999997 578899999999999998764
No 79
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=100.00 E-value=1.1e-38 Score=337.54 Aligned_cols=187 Identities=30% Similarity=0.516 Sum_probs=163.9
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCcc-------cccceeEEEccCCCCCCCCCHHHHHHHHHHcc
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLESK-------LLKIISAYVMQDDLLFPMLTVEETLMFAAEFR 73 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~~-------~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~ 73 (592)
++|+|||||||||||++|+|+.++. +|+|.++|+++... ..++.++|++|++.+++++||+||+.|+....
T Consensus 26 ~~l~G~nGsGKSTLl~~iaGl~~p~--~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~ 103 (354)
T TIGR02142 26 TAIFGRSGSGKTTLIRLIAGLTRPD--EGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQEARLFPHLSVRGNLRYGMKRA 103 (354)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCCC--ceEEEECCEECccCccccccchhhCCeEEEecCCccCCCCcHHHHHHHHhhcc
Confidence 4899999999999999999998754 59999999987421 23567899999999999999999999875421
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHH
Q 048028 74 LPRSVTKTKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVNV 153 (592)
Q Consensus 74 ~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~ 153 (592)
...+.+++++++++.+||++..++.+ +.|||||||||+||+||+.+|++|+|||||+|||+.++..+.+.
T Consensus 104 -----~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LSgGqkqRvalAraL~~~p~lllLDEPts~LD~~~~~~l~~~ 173 (354)
T TIGR02142 104 -----RPSERRISFERVIELLGIGHLLGRLP-----GRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPY 173 (354)
T ss_pred -----ChhHHHHHHHHHHHHcCChhHhcCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHH
Confidence 22344567899999999988776655 46999999999999999999999999999999999999999999
Q ss_pred HHHHHHc-CCEEEEEecCChhHHHhhhceEEEecCCeEeeecChhhHH
Q 048028 154 LQRIAKS-GSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNETPSNLA 200 (592)
Q Consensus 154 l~~la~~-g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~~~~~ 200 (592)
|++++++ |+|+|++||+++ ++..++|++++|++|+++..|+++++.
T Consensus 174 L~~l~~~~g~tiiivtH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~ 220 (354)
T TIGR02142 174 LERLHAEFGIPILYVSHSLQ-EVLRLADRVVVLEDGRVAAAGPIAEVW 220 (354)
T ss_pred HHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEeCCEEEEECCHHHHh
Confidence 9999876 899999999997 688999999999999999999988763
No 80
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=7.6e-39 Score=315.27 Aligned_cols=182 Identities=32% Similarity=0.525 Sum_probs=157.5
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCc--ccccceeEEEccCCCCCCCCCHHHHHHHHHHccCCCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLES--KLLKIISAYVMQDDLLFPMLTVEETLMFAAEFRLPRSV 78 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~--~~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~~~~~ 78 (592)
++|+||||||||||+++|+|+.++ .+|+|.++|+++.. ...++.++|++|++.+++.+||+||+.+....+ ..
T Consensus 28 ~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~ 102 (211)
T cd03264 28 YGLLGPNGAGKTTLMRILATLTPP--SSGTIRIDGQDVLKQPQKLRRRIGYLPQEFGVYPNFTVREFLDYIAWLK---GI 102 (211)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCC--CccEEEECCCccccchHHHHhheEEecCCCcccccCCHHHHHHHHHHHh---CC
Confidence 589999999999999999999875 46999999987653 234567899999999999999999999876543 12
Q ss_pred CHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 048028 79 TKTKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVNVLQRIA 158 (592)
Q Consensus 79 ~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~la 158 (592)
++.+.+++++++++.+||.+..++.+ +.|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|++++
T Consensus 103 ~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~ 177 (211)
T cd03264 103 PSKEVKARVDEVLELVNLGDRAKKKI-----GSLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPEERIRFRNLLSELG 177 (211)
T ss_pred CHHHHHHHHHHHHHHCCCHHHHhCch-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHh
Confidence 33444667899999999987776655 4699999999999999999999999999999999999999999999998
Q ss_pred HcCCEEEEEecCChhHHHhhhceEEEecCCeEeeec
Q 048028 159 KSGSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNE 194 (592)
Q Consensus 159 ~~g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g 194 (592)
+ +.|||+++|+++ ++.+++||+++|++|+++..|
T Consensus 178 ~-~~tii~vsH~~~-~~~~~~d~i~~l~~g~i~~~g 211 (211)
T cd03264 178 E-DRIVILSTHIVE-DVESLCNQVAVLNKGKLVFEG 211 (211)
T ss_pred C-CCEEEEEcCCHH-HHHHhCCEEEEEECCEEEecC
Confidence 6 589999999997 577899999999999998764
No 81
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.7e-38 Score=327.68 Aligned_cols=199 Identities=27% Similarity=0.455 Sum_probs=165.9
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCc-------ccccceeEEEccCC--CCCCCCCHHHHHHHHHH
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLES-------KLLKIISAYVMQDD--LLFPMLTVEETLMFAAE 71 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~-------~~~~~~~~yv~Q~~--~l~~~lTV~E~l~f~~~ 71 (592)
++|+||||||||||+++|+|+.++. +|+|.++|+++.. ...++.+|||+|++ .++ ..||+||+.|+..
T Consensus 36 ~~i~G~nGsGKSTLl~~l~Gl~~p~--~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~-~~tv~eni~~~~~ 112 (290)
T PRK13634 36 VAIIGHTGSGKSTLLQHLNGLLQPT--SGTVTIGERVITAGKKNKKLKPLRKKVGIVFQFPEHQLF-EETVEKDICFGPM 112 (290)
T ss_pred EEEECCCCCcHHHHHHHHhcCCCCC--CcEEEECCEECccccccchHHHHHhhEEEEeeCchhhhh-hhhHHHHHHHHHH
Confidence 5899999999999999999998754 5999999998742 13456789999986 455 4699999998754
Q ss_pred ccCCCCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHH
Q 048028 72 FRLPRSVTKTKKQERVEALINQLGLR-SAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMV 150 (592)
Q Consensus 72 l~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i 150 (592)
.. ..+..+.+++++++++.+||. +..++. ++.|||||||||+||++|+.+|++|||||||+|||+.++..+
T Consensus 113 ~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~~LSgGq~qrv~lAraL~~~P~llllDEPt~~LD~~~~~~l 184 (290)
T PRK13634 113 NF---GVSEEDAKQKAREMIELVGLPEELLARS-----PFELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEM 184 (290)
T ss_pred Hc---CCCHHHHHHHHHHHHHHCCCChhhhhCC-----cccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHH
Confidence 32 234555567899999999996 555554 456999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHc-CCEEEEEecCChhHHHhhhceEEEecCCeEeeecChhhHH---HHHHHcCCCCC
Q 048028 151 VNVLQRIAKS-GSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNETPSNLA---QFFAEFGHPVP 211 (592)
Q Consensus 151 ~~~l~~la~~-g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~~~~~---~~f~~~g~~~p 211 (592)
.+.|++++++ |.|||++||+++ ++.++|||+++|++|++++.|+++++. +.+...+...|
T Consensus 185 ~~~L~~l~~~~g~tviiitHd~~-~~~~~~drv~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~~ 248 (290)
T PRK13634 185 MEMFYKLHKEKGLTTVLVTHSME-DAARYADQIVVMHKGTVFLQGTPREIFADPDELEAIGLDLP 248 (290)
T ss_pred HHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEECCHHHHhcCHHHHHHCCCCCC
Confidence 9999999875 899999999997 688999999999999999999988763 23444454433
No 82
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.6e-38 Score=329.46 Aligned_cols=189 Identities=24% Similarity=0.404 Sum_probs=161.4
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecC---------------------------cccccceeEEEccC
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLE---------------------------SKLLKIISAYVMQD 53 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~---------------------------~~~~~~~~~yv~Q~ 53 (592)
++|+||||||||||+++|+|+++|. +|+|.++|++.. ....++.+|||+|+
T Consensus 36 v~iiG~nGsGKSTLl~~L~Gl~~p~--~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~ 113 (305)
T PRK13651 36 IAIIGQTGSGKTTFIEHLNALLLPD--TGTIEWIFKDEKNKKKTKEKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQF 113 (305)
T ss_pred EEEECCCCCcHHHHHHHHhCCCCCC--CcEEEEeceecccccccccccccccccccccccccccchHHHHHhceEEEeeC
Confidence 5899999999999999999998864 599999987542 12345678999998
Q ss_pred C-CCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCc
Q 048028 54 D-LLFPMLTVEETLMFAAEFRLPRSVTKTKKQERVEALINQLGLR-SAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPI 131 (592)
Q Consensus 54 ~-~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~ 131 (592)
+ ..+...||+||+.|+.... ..++++.+++++++++.+||. +..++. +..|||||||||+||++|+.+|+
T Consensus 114 ~~~~l~~~tv~e~i~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~~LSgGqkqrvalA~aL~~~P~ 185 (305)
T PRK13651 114 AEYQLFEQTIEKDIIFGPVSM---GVSKEEAKKRAAKYIELVGLDESYLQRS-----PFELSGGQKRRVALAGILAMEPD 185 (305)
T ss_pred cccccccccHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHcCCChhhhhCC-----hhhCCHHHHHHHHHHHHHHhCCC
Confidence 5 2334579999999876432 345566678899999999996 556544 45699999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCChhHHHhhhceEEEecCCeEeeecChhhHH
Q 048028 132 LLFLDEPTSGLDSTSAFMVVNVLQRIAKSGSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNETPSNLA 200 (592)
Q Consensus 132 lllLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~~~~~ 200 (592)
+|+|||||+|||+.++..+.+.|++++++|+|||+++|+++ .+.+.+||+++|++|++++.|+++++.
T Consensus 186 lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~-~~~~~adrv~vl~~G~i~~~g~~~~~~ 253 (305)
T PRK13651 186 FLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLD-NVLEWTKRTIFFKDGKIIKDGDTYDIL 253 (305)
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCHH-HHHHhCCEEEEEECCEEEEECCHHHHh
Confidence 99999999999999999999999999878999999999987 588999999999999999999998863
No 83
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=100.00 E-value=1.5e-38 Score=317.46 Aligned_cols=188 Identities=30% Similarity=0.441 Sum_probs=160.0
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCcccccceeEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCH
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLESKLLKIISAYVMQDDLLFPMLTVEETLMFAAEFRLPRSVTK 80 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~ 80 (592)
++|+||||||||||+++|+|+.++ .+|+|.++|+++..... ..+|++|++.+++.+||+||+.+......+ ...+
T Consensus 14 ~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~~~~~--~~~~v~q~~~l~~~~tv~e~l~~~~~~~~~-~~~~ 88 (230)
T TIGR01184 14 ISLIGHSGCGKSTLLNLISGLAQP--TSGGVILEGKQITEPGP--DRMVVFQNYSLLPWLTVRENIALAVDRVLP-DLSK 88 (230)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEECCCCCh--hheEEecCcccCCCCCHHHHHHHHHHhccc-CCCH
Confidence 589999999999999999999875 46999999998754322 248999999999999999999886421111 2334
Q ss_pred HHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc
Q 048028 81 TKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVNVLQRIAKS 160 (592)
Q Consensus 81 ~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~la~~ 160 (592)
.+.+++++++++.+||++..++.+ +.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++
T Consensus 89 ~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~ 163 (230)
T TIGR01184 89 SERRAIVEEHIALVGLTEAADKRP-----GQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEE 163 (230)
T ss_pred HHHHHHHHHHHHHcCCHHHHcCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHh
Confidence 455667899999999987776655 469999999999999999999999999999999999999999999999875
Q ss_pred -CCEEEEEecCChhHHHhhhceEEEecCCeEeeecChhhH
Q 048028 161 -GSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNETPSNL 199 (592)
Q Consensus 161 -g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~~~~ 199 (592)
|+|||+++|+++ ++.+++|++++|++|+++..|++.++
T Consensus 164 ~~~tii~~sH~~~-~~~~~~d~v~~l~~G~i~~~~~~~~~ 202 (230)
T TIGR01184 164 HRVTVLMVTHDVD-EALLLSDRVVMLTNGPAANIGQILEV 202 (230)
T ss_pred cCCEEEEEeCCHH-HHHHhcCEEEEEeCCcEecccCceec
Confidence 899999999997 68899999999999999988866543
No 84
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=100.00 E-value=4.6e-36 Score=364.96 Aligned_cols=192 Identities=32% Similarity=0.482 Sum_probs=170.7
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCc--ccccceeEEEccCCCCCCCCCHHHHHHHHHHccCCCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLES--KLLKIISAYVMQDDLLFPMLTVEETLMFAAEFRLPRSV 78 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~--~~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~~~~~ 78 (592)
++|+||||||||||+|+|+|+.+|. +|+|.++|+++.. ...++.+||++|++.+++.+||+||+.|.++++. .
T Consensus 959 ~aLLG~NGAGKSTLLkiLaGLl~Pt--sG~I~i~G~dI~~~~~~~r~~IG~~pQ~~~L~~~LTV~E~L~f~~~lkg---~ 1033 (2272)
T TIGR01257 959 TAFLGHNGAGKTTTLSILTGLLPPT--SGTVLVGGKDIETNLDAVRQSLGMCPQHNILFHHLTVAEHILFYAQLKG---R 1033 (2272)
T ss_pred EEEECCCCChHHHHHHHHhcCCCCC--ceEEEECCEECcchHHHHhhcEEEEecCCcCCCCCCHHHHHHHHHHhcC---C
Confidence 4899999999999999999998854 5999999998853 2346679999999999999999999999877652 3
Q ss_pred CHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 048028 79 TKTKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVNVLQRIA 158 (592)
Q Consensus 79 ~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~la 158 (592)
+.++.+++++++++.+||++.+|+.++ .|||||||||+||+||+.+|++++|||||+|||+.+++.+.++|++++
T Consensus 1034 ~~~~~~~~v~~lL~~vgL~~~~~~~~~-----~LSGGqKQRLsLArALi~~PkVLLLDEPTSGLDp~sr~~l~~lL~~l~ 1108 (2272)
T TIGR01257 1034 SWEEAQLEMEAMLEDTGLHHKRNEEAQ-----DLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYR 1108 (2272)
T ss_pred CHHHHHHHHHHHHHHcCCchhhcCChh-----hCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHh
Confidence 345556789999999999988876654 599999999999999999999999999999999999999999999995
Q ss_pred HcCCEEEEEecCChhHHHhhhceEEEecCCeEeeecChhhHHHHHH
Q 048028 159 KSGSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNETPSNLAQFFA 204 (592)
Q Consensus 159 ~~g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~~~~~~~f~ 204 (592)
+|+|||++||+++ ++..++||+++|++|+++..|+++++++.|.
T Consensus 1109 -~g~TIIltTHdmd-ea~~laDrI~iL~~GkL~~~Gs~~~Lk~~~g 1152 (2272)
T TIGR01257 1109 -SGRTIIMSTHHMD-EADLLGDRIAIISQGRLYCSGTPLFLKNCFG 1152 (2272)
T ss_pred -CCCEEEEEECCHH-HHHHhCCEEEEEECCEEEEecCHHHHHHhcC
Confidence 5999999999997 6889999999999999999999999887654
No 85
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=100.00 E-value=1.3e-38 Score=314.23 Aligned_cols=179 Identities=31% Similarity=0.501 Sum_probs=155.5
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCcc------cccceeEEEccCCCCCCCCCHHHHHHHHHHccC
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLESK------LLKIISAYVMQDDLLFPMLTVEETLMFAAEFRL 74 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~~------~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~ 74 (592)
++|+||||||||||+++|+|..++ .+|+|.++|+++... ..++.++|++|++.+++.+|++||+.+....+
T Consensus 30 ~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~t~~~~l~~~~~~~- 106 (214)
T cd03292 30 VFLVGPSGAGKSTLLKLIYKEELP--TSGTIRVNGQDVSDLRGRAIPYLRRKIGVVFQDFRLLPDRNVYENVAFALEVT- 106 (214)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCC--CceEEEECCEEcccCCHHHHHHHHHheEEEecCchhccCCcHHHHHHHHHHHc-
Confidence 489999999999999999999875 459999999987531 24567899999999999999999999876543
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHH
Q 048028 75 PRSVTKTKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVNVL 154 (592)
Q Consensus 75 ~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l 154 (592)
....++.+++++++++.+|+++..++.+ +.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|
T Consensus 107 --~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l 179 (214)
T cd03292 107 --GVPPREIRKRVPAALELVGLSHKHRALP-----AELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLL 179 (214)
T ss_pred --CCCHHHHHHHHHHHHHHcCCHHHhhCCh-----hhcCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHH
Confidence 1234455677899999999988776654 469999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCEEEEEecCChhHHHhhhceEEEecCCeE
Q 048028 155 QRIAKSGSIVIMSIHQPSYRILSLLDRLIILSHGQS 190 (592)
Q Consensus 155 ~~la~~g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~ 190 (592)
++++++|+|+|+++|++. ++.+++|++++|++|++
T Consensus 180 ~~~~~~~~tiiivtH~~~-~~~~~~d~i~~l~~G~~ 214 (214)
T cd03292 180 KKINKAGTTVVVATHAKE-LVDTTRHRVIALERGKL 214 (214)
T ss_pred HHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEeCCcC
Confidence 999878999999999997 57789999999999974
No 86
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=100.00 E-value=2.2e-38 Score=323.54 Aligned_cols=189 Identities=25% Similarity=0.433 Sum_probs=162.7
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCcc------cccceeEEEccCCCCCCCCCHHHHHHHHHHccC
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLESK------LLKIISAYVMQDDLLFPMLTVEETLMFAAEFRL 74 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~~------~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~ 74 (592)
++|+|||||||||||++|+|+.+|. +|+|.++|+++... ..++.++|++|+..+++.+||.||+.+......
T Consensus 36 ~~i~G~nGsGKSTLl~~l~Gl~~p~--~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~ 113 (269)
T PRK11831 36 TAIMGPSGIGKTTLLRLIGGQIAPD--HGEILFDGENIPAMSRSRLYTVRKRMSMLFQSGALFTDMNVFDNVAYPLREHT 113 (269)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCCC--CceEEECCEEccccChhhHHHHhhcEEEEecccccCCCCCHHHHHHHHHHHcc
Confidence 5899999999999999999998754 59999999987531 134568999999999999999999988643221
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHH
Q 048028 75 PRSVTKTKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVNVL 154 (592)
Q Consensus 75 ~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l 154 (592)
..+..+.++++.++++.+||.+..++.+ +.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|
T Consensus 114 --~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l 186 (269)
T PRK11831 114 --QLPAPLLHSTVMMKLEAVGLRGAAKLMP-----SELSGGMARRAALARAIALEPDLIMFDEPFVGQDPITMGVLVKLI 186 (269)
T ss_pred --CCCHHHHHHHHHHHHHHcCChhhhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHH
Confidence 1234445567889999999988776655 469999999999999999999999999999999999999999999
Q ss_pred HHHHHc-CCEEEEEecCChhHHHhhhceEEEecCCeEeeecChhhH
Q 048028 155 QRIAKS-GSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNETPSNL 199 (592)
Q Consensus 155 ~~la~~-g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~~~~ 199 (592)
++++++ |+|||+++|++. ++.++||++++|++|++++.|+++++
T Consensus 187 ~~~~~~~g~tiiivsH~~~-~~~~~~d~v~~l~~G~i~~~g~~~~~ 231 (269)
T PRK11831 187 SELNSALGVTCVVVSHDVP-EVLSIADHAYIVADKKIVAHGSAQAL 231 (269)
T ss_pred HHHHHhcCcEEEEEecCHH-HHHHhhCEEEEEECCEEEEeCCHHHH
Confidence 999875 899999999987 58899999999999999999998765
No 87
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.1e-38 Score=325.23 Aligned_cols=188 Identities=27% Similarity=0.457 Sum_probs=163.2
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCc---ccccceeEEEccCC-CCCCCCCHHHHHHHHHHccCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLES---KLLKIISAYVMQDD-LLFPMLTVEETLMFAAEFRLPR 76 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~---~~~~~~~~yv~Q~~-~l~~~lTV~E~l~f~~~l~~~~ 76 (592)
++|+||||||||||+++|+|+++|. +|+|.++|+++.. ...++.++|++|++ .+++.+||+||+.|.....
T Consensus 36 ~~i~G~nGsGKSTLl~~l~Gl~~p~--~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~--- 110 (279)
T PRK13650 36 LSIIGHNGSGKSTTVRLIDGLLEAE--SGQIIIDGDLLTEENVWDIRHKIGMVFQNPDNQFVGATVEDDVAFGLENK--- 110 (279)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCCC--CcEEEECCEECCcCcHHHHHhhceEEEcChHHhcccccHHHHHHhhHHhC---
Confidence 5899999999999999999998754 5999999998753 23456789999997 4677889999999875432
Q ss_pred CCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHH
Q 048028 77 SVTKTKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVNVLQR 156 (592)
Q Consensus 77 ~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~ 156 (592)
..++++..++++++++.+||++..+..+ +.||||||||++||++|+.+|++|+|||||+|||+.++..+++.|++
T Consensus 111 ~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~ 185 (279)
T PRK13650 111 GIPHEEMKERVNEALELVGMQDFKEREP-----ARLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKG 185 (279)
T ss_pred CCCHHHHHHHHHHHHHHCCCHhHhhCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHH
Confidence 3455566678999999999988776655 46999999999999999999999999999999999999999999999
Q ss_pred HHHc-CCEEEEEecCChhHHHhhhceEEEecCCeEeeecChhhHH
Q 048028 157 IAKS-GSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNETPSNLA 200 (592)
Q Consensus 157 la~~-g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~~~~~ 200 (592)
++++ |+|||+++|+++ ++ ..|||+++|++|+++..|+++++.
T Consensus 186 l~~~~g~tilivtH~~~-~~-~~~dri~~l~~G~i~~~g~~~~~~ 228 (279)
T PRK13650 186 IRDDYQMTVISITHDLD-EV-ALSDRVLVMKNGQVESTSTPRELF 228 (279)
T ss_pred HHHhcCCEEEEEecCHH-HH-HhCCEEEEEECCEEEEECCHHHHH
Confidence 9875 999999999987 46 589999999999999999988763
No 88
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.6e-38 Score=335.99 Aligned_cols=183 Identities=31% Similarity=0.510 Sum_probs=161.8
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCc-------ccccceeEEEccCCCCCCCCCHHHHHHHHHHcc
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLES-------KLLKIISAYVMQDDLLFPMLTVEETLMFAAEFR 73 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~-------~~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~ 73 (592)
++|+|||||||||||++|+|+.++. +|+|.++|+++.. ...++.++|++|+..+++++||+||+.++.+
T Consensus 27 ~~l~G~nGsGKSTLl~~iaGl~~p~--~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~-- 102 (352)
T PRK11144 27 TAIFGRSGAGKTSLINAISGLTRPQ--KGRIVLNGRVLFDAEKGICLPPEKRRIGYVFQDARLFPHYKVRGNLRYGMA-- 102 (352)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCCC--ceEEEECCEEccccccccccchhhCCEEEEcCCcccCCCCcHHHHHHhhhh--
Confidence 4899999999999999999998754 5999999998642 1235678999999999999999999988632
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHH
Q 048028 74 LPRSVTKTKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVNV 153 (592)
Q Consensus 74 ~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~ 153 (592)
...+++++++++.+||++..++.+ +.|||||||||+|||+|+.+|++|+|||||+|||+.++..+.+.
T Consensus 103 -------~~~~~~~~~~l~~~gl~~~~~~~~-----~~LSgGq~qRvalaraL~~~p~llLLDEPts~LD~~~~~~l~~~ 170 (352)
T PRK11144 103 -------KSMVAQFDKIVALLGIEPLLDRYP-----GSLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPY 170 (352)
T ss_pred -------hhhHHHHHHHHHHcCCchhhhCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHH
Confidence 123467899999999988776654 46999999999999999999999999999999999999999999
Q ss_pred HHHHHHc-CCEEEEEecCChhHHHhhhceEEEecCCeEeeecChhhHH
Q 048028 154 LQRIAKS-GSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNETPSNLA 200 (592)
Q Consensus 154 l~~la~~-g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~~~~~ 200 (592)
|++++++ |+|+|++||+++ ++.+++|++++|++|+++..|+++++.
T Consensus 171 L~~l~~~~g~tii~vTHd~~-~~~~~~d~i~~l~~G~i~~~g~~~~i~ 217 (352)
T PRK11144 171 LERLAREINIPILYVSHSLD-EILRLADRVVVLEQGKVKAFGPLEEVW 217 (352)
T ss_pred HHHHHHhcCCeEEEEecCHH-HHHHhCCEEEEEeCCEEEEecCHHHHH
Confidence 9999876 899999999997 689999999999999999999998873
No 89
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=100.00 E-value=1.8e-38 Score=313.25 Aligned_cols=178 Identities=37% Similarity=0.550 Sum_probs=154.7
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCcc------cccceeEEEccCCCCCCCCCHHHHHHHHHHccC
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLESK------LLKIISAYVMQDDLLFPMLTVEETLMFAAEFRL 74 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~~------~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~ 74 (592)
++|+||||||||||+++|+|+.++ .+|+|.++|+++... ..++.++|++|++.+++.+||+||+.+....+
T Consensus 31 ~~l~G~nGsGKSTLl~~i~Gl~~~--~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~- 107 (214)
T TIGR02673 31 LFLTGPSGAGKTTLLKLLYGALTP--SRGQVRIAGEDVNRLRGRQLPLLRRRIGVVFQDFRLLPDRTVYENVALPLEVR- 107 (214)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEEcccCCHHHHHHHHhheEEEecChhhccCCcHHHHHHHHHHHc-
Confidence 489999999999999999999875 469999999987531 24567899999999999999999999875533
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHH
Q 048028 75 PRSVTKTKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVNVL 154 (592)
Q Consensus 75 ~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l 154 (592)
.....+.+++++++++.+++.+..++.+ +.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|
T Consensus 108 --~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l 180 (214)
T TIGR02673 108 --GKKEREIQRRVGAALRQVGLEHKADAFP-----EQLSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERILDLL 180 (214)
T ss_pred --CCCHHHHHHHHHHHHHHcCChhhhhCCh-----hhCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence 1234445678899999999987666554 469999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCEEEEEecCChhHHHhhhceEEEecCCe
Q 048028 155 QRIAKSGSIVIMSIHQPSYRILSLLDRLIILSHGQ 189 (592)
Q Consensus 155 ~~la~~g~tvi~~~H~~~~~i~~~~D~v~ll~~G~ 189 (592)
++++++|+|||+++|+++ ++.++||++++|++|+
T Consensus 181 ~~~~~~~~tii~~tH~~~-~~~~~~d~i~~l~~G~ 214 (214)
T TIGR02673 181 KRLNKRGTTVIVATHDLS-LVDRVAHRVIILDDGR 214 (214)
T ss_pred HHHHHcCCEEEEEeCCHH-HHHHhcCEEEEecCCC
Confidence 999877999999999997 6888999999999985
No 90
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3e-38 Score=315.89 Aligned_cols=184 Identities=26% Similarity=0.411 Sum_probs=157.2
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCccc------c-cceeEEEccCCCCCCCCCHHHHHHHHHHcc
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLESKL------L-KIISAYVMQDDLLFPMLTVEETLMFAAEFR 73 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~~~------~-~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~ 73 (592)
++|+||||||||||+++|+|+.++ .+|+|.++|+++.... . ++.++|++|++.+++.+||+||+.+....+
T Consensus 38 ~~l~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~ 115 (233)
T PRK11629 38 MAIVGSSGSGKSTLLHLLGGLDTP--TSGDVIFNGQPMSKLSSAAKAELRNQKLGFIYQFHHLLPDFTALENVAMPLLIG 115 (233)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCC--CceEEEECCEEcCcCCHHHHHHHHhccEEEEecCcccCCCCCHHHHHHHHHHhc
Confidence 589999999999999999999875 4699999999875321 1 256899999999999999999999875432
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHH
Q 048028 74 LPRSVTKTKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVNV 153 (592)
Q Consensus 74 ~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~ 153 (592)
...+++.+++++++++.+||++..++.+ +.||||||||++||++|+.+|++|||||||+|||+.++..+.+.
T Consensus 116 ---~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~ 187 (233)
T PRK11629 116 ---KKKPAEINSRALEMLAAVGLEHRANHRP-----SELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQL 187 (233)
T ss_pred ---CCCHHHHHHHHHHHHHHcCCchhhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHH
Confidence 2234455678899999999987766554 46999999999999999999999999999999999999999999
Q ss_pred HHHHHH-cCCEEEEEecCChhHHHhhhceEEEecCCeEeeecCh
Q 048028 154 LQRIAK-SGSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNETP 196 (592)
Q Consensus 154 l~~la~-~g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~ 196 (592)
|+++++ +|+|||+++|+++ ++.. +|++++|++|+++..++.
T Consensus 188 l~~~~~~~g~tvii~sH~~~-~~~~-~~~~~~l~~G~i~~~~~~ 229 (233)
T PRK11629 188 LGELNRLQGTAFLVVTHDLQ-LAKR-MSRQLEMRDGRLTAELSL 229 (233)
T ss_pred HHHHHHhCCCEEEEEeCCHH-HHHh-hCEEEEEECCEEEEEecc
Confidence 999976 5899999999997 4554 689999999999988764
No 91
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2e-38 Score=318.66 Aligned_cols=189 Identities=26% Similarity=0.487 Sum_probs=163.1
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCcc----cccceeEEEccCCCCCCCCCHHHHHHHHHHccCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLESK----LLKIISAYVMQDDLLFPMLTVEETLMFAAEFRLPR 76 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~~----~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~~~ 76 (592)
++|+||||||||||+++|+|+.++. +|+|.++|.++... ..++.++|++|++.+++.+||.||+.+....+.
T Consensus 32 ~~l~G~nGsGKSTLl~~l~G~~~~~--~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~-- 107 (241)
T PRK10895 32 VGLLGPNGAGKTTTFYMVVGIVPRD--AGNIIIDDEDISLLPLHARARRGIGYLPQEASIFRRLSVYDNLMAVLQIRD-- 107 (241)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCCC--CcEEEECCEECCCCCHHHHHHhCeEEeccCCcccccCcHHHHHhhhhhccc--
Confidence 5899999999999999999998754 59999999987532 234568999999999999999999987653321
Q ss_pred CCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHH
Q 048028 77 SVTKTKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVNVLQR 156 (592)
Q Consensus 77 ~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~ 156 (592)
..+.++.+++++++++.+|+.+..++.+ +.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.+++
T Consensus 108 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~ 182 (241)
T PRK10895 108 DLSAEQREDRANELMEEFHIEHLRDSMG-----QSLSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEH 182 (241)
T ss_pred ccCHHHHHHHHHHHHHHcCCHHHhhcch-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHH
Confidence 2233455677899999999987665544 56999999999999999999999999999999999999999999999
Q ss_pred HHHcCCEEEEEecCChhHHHhhhceEEEecCCeEeeecChhhH
Q 048028 157 IAKSGSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNETPSNL 199 (592)
Q Consensus 157 la~~g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~~~~ 199 (592)
++++|+|||+++|+++ ++.+.+|++++|++|++++.|+++++
T Consensus 183 ~~~~g~tiii~sH~~~-~~~~~~d~v~~l~~G~i~~~~~~~~~ 224 (241)
T PRK10895 183 LRDSGLGVLITDHNVR-ETLAVCERAYIVSQGHLIAHGTPTEI 224 (241)
T ss_pred HHhcCCEEEEEEcCHH-HHHHhcCEEEEEeCCeEEeeCCHHHH
Confidence 9878999999999997 68899999999999999999998765
No 92
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.1e-38 Score=329.26 Aligned_cols=199 Identities=27% Similarity=0.451 Sum_probs=165.6
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCc-------------------ccccceeEEEccCC--CCCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLES-------------------KLLKIISAYVMQDD--LLFPM 59 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~-------------------~~~~~~~~yv~Q~~--~l~~~ 59 (592)
+||+||||||||||+++|+|+.++. +|+|.++|+++.. ...++.++||+|++ .+++
T Consensus 55 ~~I~G~nGsGKSTLl~~L~Gl~~p~--~G~I~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~- 131 (320)
T PRK13631 55 YFIIGNSGSGKSTLVTHFNGLIKSK--YGTIQVGDIYIGDKKNNHELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFK- 131 (320)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCCC--CCeEEECCEEcccccccccccccccccccchHHHHHhcEEEEEECchhcccc-
Confidence 5899999999999999999998854 5999999987642 13456799999986 4666
Q ss_pred CCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCC
Q 048028 60 LTVEETLMFAAEFRLPRSVTKTKKQERVEALINQLGLR-SAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEP 138 (592)
Q Consensus 60 lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEP 138 (592)
.||+||+.|+.... ..+.++..++++++++.+||. +..++ .+..|||||||||+|||+|+.+|++||||||
T Consensus 132 ~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~-----~~~~LSgGqkqRvaiAraL~~~p~iLLLDEP 203 (320)
T PRK13631 132 DTIEKDIMFGPVAL---GVKKSEAKKLAKFYLNKMGLDDSYLER-----SPFGLSGGQKRRVAIAGILAIQPEILIFDEP 203 (320)
T ss_pred chHHHHHHhhHHhc---CCCHHHHHHHHHHHHHHcCCChhHhcC-----CcccCCHHHHHHHHHHHHHHcCCCEEEEECC
Confidence 49999998875322 234555667889999999996 45544 3457999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCChhHHHhhhceEEEecCCeEeeecChhhHH---HHHHHcCCCCC
Q 048028 139 TSGLDSTSAFMVVNVLQRIAKSGSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNETPSNLA---QFFAEFGHPVP 211 (592)
Q Consensus 139 tsgLD~~~~~~i~~~l~~la~~g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~~~~~---~~f~~~g~~~p 211 (592)
|+|||+.++..+.+.|++++++|+|||+++|+++ ++.+.|||+++|++|+++..|+++++. +.++..+...|
T Consensus 204 tsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~-~~~~~adri~vl~~G~i~~~g~~~~~~~~~~~~~~~~~~~p 278 (320)
T PRK13631 204 TAGLDPKGEHEMMQLILDAKANNKTVFVITHTME-HVLEVADEVIVMDKGKILKTGTPYEIFTDQHIINSTSIQVP 278 (320)
T ss_pred ccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEEECCEEEEeCCHHHHhcCHHHHHHcCCCCC
Confidence 9999999999999999999878999999999987 578899999999999999999998763 23444454433
No 93
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.1e-38 Score=312.13 Aligned_cols=183 Identities=28% Similarity=0.450 Sum_probs=156.5
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCcc-cccceeEEEccCCCCCCCCCHHHHHHHHHHccCCCCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLESK-LLKIISAYVMQDDLLFPMLTVEETLMFAAEFRLPRSVT 79 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~~-~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~ 79 (592)
++|+||||||||||+++|+|+.++. +|+|.++|+++... ..++.++|++|++.+++.+||+||+.+....+. . .
T Consensus 27 ~~l~G~nGsGKSTLl~~l~gl~~~~--~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~--~-~ 101 (211)
T cd03298 27 TAIVGPSGSGKSTLLNLIAGFETPQ--SGRVLINGVDVTAAPPADRPVSMLFQENNLFAHLTVEQNVGLGLSPGL--K-L 101 (211)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCCC--CceEEECCEEcCcCCHhHccEEEEecccccCCCCcHHHHHhccccccc--C-c
Confidence 4899999999999999999998754 59999999987532 234568999999999999999999987643211 1 1
Q ss_pred HHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Q 048028 80 KTKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVNVLQRIAK 159 (592)
Q Consensus 80 ~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~la~ 159 (592)
.++.+++++++++.+||++..++.+ ..||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++
T Consensus 102 ~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~ia~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~ 176 (211)
T cd03298 102 TAEDRQAIEVALARVGLAGLEKRLP-----GELSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHA 176 (211)
T ss_pred cHHHHHHHHHHHHHcCCHHHHhCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH
Confidence 2234567899999999987776654 46999999999999999999999999999999999999999999999986
Q ss_pred c-CCEEEEEecCChhHHHhhhceEEEecCCeEeeec
Q 048028 160 S-GSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNE 194 (592)
Q Consensus 160 ~-g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g 194 (592)
+ |+|||+++|+++ ++.++||++++|++|+++..|
T Consensus 177 ~~~~tii~~sH~~~-~~~~~~d~i~~l~~G~i~~~~ 211 (211)
T cd03298 177 ETKMTVLMVTHQPE-DAKRLAQRVVFLDNGRIAAQG 211 (211)
T ss_pred hcCCEEEEEecCHH-HHHhhhCEEEEEECCEEeecC
Confidence 4 899999999997 588899999999999998654
No 94
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.8e-38 Score=311.94 Aligned_cols=181 Identities=34% Similarity=0.506 Sum_probs=156.4
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCc-------ccccceeEEEccCCCCCCCCCHHHHHHHHHHcc
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLES-------KLLKIISAYVMQDDLLFPMLTVEETLMFAAEFR 73 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~-------~~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~ 73 (592)
++|+||||||||||+++|+|+.++ .+|+|.++|.++.. ...++.++|++|++.+++.+|++||+.+.....
T Consensus 26 ~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~ 103 (214)
T cd03297 26 TGIFGASGAGKSTLLRCIAGLEKP--DGGTIVLNGTVLFDSRKKINLPPQQRKIGLVFQQYALFPHLNVRENLAFGLKRK 103 (214)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEecccccchhhhhhHhhcEEEEecCCccCCCCCHHHHHHHHHhhC
Confidence 489999999999999999999875 46999999988642 123557899999999999999999998765321
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHH
Q 048028 74 LPRSVTKTKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVNV 153 (592)
Q Consensus 74 ~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~ 153 (592)
.....+++++++++.+|+++..++.+ +.||||||||++||++|+.+|++++|||||+|||+.++..+.+.
T Consensus 104 -----~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~ 173 (214)
T cd03297 104 -----RNREDRISVDELLDLLGLDHLLNRYP-----AQLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPE 173 (214)
T ss_pred -----CHHHHHHHHHHHHHHcCCHhHhhcCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHH
Confidence 23344567899999999987666544 56999999999999999999999999999999999999999999
Q ss_pred HHHHHHc-CCEEEEEecCChhHHHhhhceEEEecCCeEeeec
Q 048028 154 LQRIAKS-GSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNE 194 (592)
Q Consensus 154 l~~la~~-g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g 194 (592)
|++++++ |+|||+++|+++ ++.+++|++++|++|+++..|
T Consensus 174 l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~g 214 (214)
T cd03297 174 LKQIKKNLNIPVIFVTHDLS-EAEYLADRIVVMEDGRLQYIG 214 (214)
T ss_pred HHHHHHHcCcEEEEEecCHH-HHHHhcCEEEEEECCEEEecC
Confidence 9999876 899999999997 588899999999999998765
No 95
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=100.00 E-value=3e-38 Score=334.60 Aligned_cols=189 Identities=26% Similarity=0.434 Sum_probs=165.4
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCE----ecCc---cc---c-cceeEEEccCCCCCCCCCHHHHHHHH
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGE----VLES---KL---L-KIISAYVMQDDLLFPMLTVEETLMFA 69 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~----~~~~---~~---~-~~~~~yv~Q~~~l~~~lTV~E~l~f~ 69 (592)
++|+||||||||||+++|+|+++|. +|+|.++|+ ++.. .. . ++.++||+|+..++|++||+||+.++
T Consensus 53 ~~I~G~nGsGKSTLlr~L~Gl~~p~--~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~~~l~p~~Tv~eNi~~~ 130 (382)
T TIGR03415 53 CVLMGLSGSGKSSLLRAVNGLNPVS--RGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQKFALMPWLTVEENVAFG 130 (382)
T ss_pred EEEECCCCCcHHHHHHHHhCCCCCC--CcEEEECCEecccccccCCHHHHHHHhcCCEEEEECCCcCCCCCcHHHHHHHH
Confidence 4899999999999999999998854 599999996 3321 11 1 24689999999999999999999998
Q ss_pred HHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHH
Q 048028 70 AEFRLPRSVTKTKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFM 149 (592)
Q Consensus 70 ~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~ 149 (592)
...+ ..++.+.+++++++++.+||++..|+.++ .|||||||||+|||+|+.+|+||||||||+|||+.++.+
T Consensus 131 ~~~~---g~~~~~~~~~a~e~le~vgL~~~~~~~~~-----~LSgGq~QRV~LARALa~~P~ILLlDEPts~LD~~~r~~ 202 (382)
T TIGR03415 131 LEMQ---GMPEAERRKRVDEQLELVGLAQWADKKPG-----ELSGGMQQRVGLARAFAMDADILLMDEPFSALDPLIRTQ 202 (382)
T ss_pred HHhc---CCCHHHHHHHHHHHHHHcCCchhhcCChh-----hCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHH
Confidence 6543 24456667889999999999887766554 599999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHc-CCEEEEEecCChhHHHhhhceEEEecCCeEeeecChhhHH
Q 048028 150 VVNVLQRIAKS-GSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNETPSNLA 200 (592)
Q Consensus 150 i~~~l~~la~~-g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~~~~~ 200 (592)
+.+.|+++.++ |+|||++||+++ ++.+++||+++|++|+++..|+++++.
T Consensus 203 l~~~L~~l~~~~~~TII~iTHdl~-e~~~l~DrI~vl~~G~iv~~g~~~ei~ 253 (382)
T TIGR03415 203 LQDELLELQAKLNKTIIFVSHDLD-EALKIGNRIAIMEGGRIIQHGTPEEIV 253 (382)
T ss_pred HHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEecCHHHHh
Confidence 99999999875 899999999997 688999999999999999999998773
No 96
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1.4e-38 Score=305.83 Aligned_cols=188 Identities=29% Similarity=0.496 Sum_probs=161.2
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCcc----cccceeEEEccCCCCCCCCCHHHHHHHHHHccCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLESK----LLKIISAYVMQDDLLFPMLTVEETLMFAAEFRLPR 76 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~~----~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~~~ 76 (592)
++|+||||||||||||+|+|+.++. +|+|.++|++++.. ..+..++||||...+||.|||+|||..++..+..
T Consensus 32 v~llG~NGaGKTTlLkti~Gl~~~~--~G~I~~~G~dit~~p~~~r~r~Gi~~VPegR~iF~~LTVeENL~~g~~~~~~- 108 (237)
T COG0410 32 VALLGRNGAGKTTLLKTIMGLVRPR--SGRIIFDGEDITGLPPHERARLGIAYVPEGRRIFPRLTVEENLLLGAYARRD- 108 (237)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCCC--CeeEEECCeecCCCCHHHHHhCCeEeCcccccchhhCcHHHHHhhhhhcccc-
Confidence 5799999999999999999998754 59999999999753 3456689999999999999999999988654421
Q ss_pred CCCHHHHHHHHHHHHHHcC-CcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHH
Q 048028 77 SVTKTKKQERVEALINQLG-LRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVNVLQ 155 (592)
Q Consensus 77 ~~~~~~~~~~v~~~l~~lg-L~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~ 155 (592)
+...+..++++.+.|- |.+..+++-|+ |||||||-++|||||+.+|++|+|||||.||-|.-..+|.+.++
T Consensus 109 ---~~~~~~~~e~v~~lFP~Lker~~~~aG~-----LSGGEQQMLAiaRALm~~PklLLLDEPs~GLaP~iv~~I~~~i~ 180 (237)
T COG0410 109 ---KEAQERDLEEVYELFPRLKERRNQRAGT-----LSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIK 180 (237)
T ss_pred ---cccccccHHHHHHHChhHHHHhcCcccC-----CChHHHHHHHHHHHHhcCCCEEEecCCccCcCHHHHHHHHHHHH
Confidence 1122223777777773 66777766664 99999999999999999999999999999999999999999999
Q ss_pred HHHHc-CCEEEEEecCChhHHHhhhceEEEecCCeEeeecChhhHH
Q 048028 156 RIAKS-GSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNETPSNLA 200 (592)
Q Consensus 156 ~la~~-g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~~~~~ 200 (592)
+++++ |.||+++-++.. .+.+++||.++|.+|+++++|+.+++.
T Consensus 181 ~l~~~~g~tIlLVEQn~~-~Al~iaDr~yvle~Griv~~G~~~eL~ 225 (237)
T COG0410 181 ELRKEGGMTILLVEQNAR-FALEIADRGYVLENGRIVLSGTAAELL 225 (237)
T ss_pred HHHHcCCcEEEEEeccHH-HHHHhhCEEEEEeCCEEEEecCHHHHh
Confidence 99976 778999888876 689999999999999999999998874
No 97
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.1e-38 Score=325.30 Aligned_cols=188 Identities=26% Similarity=0.443 Sum_probs=161.5
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCc-------ccccceeEEEccCC--CCCCCCCHHHHHHHHHH
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLES-------KLLKIISAYVMQDD--LLFPMLTVEETLMFAAE 71 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~-------~~~~~~~~yv~Q~~--~l~~~lTV~E~l~f~~~ 71 (592)
++|+||||||||||||+|+|+++|. +|+|.++|+++.. ...++.++|++|++ .++ .+||.||+.+...
T Consensus 36 ~~iiG~NGaGKSTLl~~l~Gl~~p~--~G~i~~~g~~~~~~~~~~~~~~~~~~ig~v~q~~~~~~~-~~tv~e~l~~~~~ 112 (287)
T PRK13641 36 VALVGHTGSGKSTLMQHFNALLKPS--SGTITIAGYHITPETGNKNLKKLRKKVSLVFQFPEAQLF-ENTVLKDVEFGPK 112 (287)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCCC--CcEEEECCEECccccccchHHHHHhceEEEEeChhhhhc-cchHHHHHHHHHH
Confidence 5899999999999999999998864 5999999998742 12345789999996 355 5799999988654
Q ss_pred ccCCCCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHH
Q 048028 72 FRLPRSVTKTKKQERVEALINQLGLR-SAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMV 150 (592)
Q Consensus 72 l~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i 150 (592)
.. ...+++.+++++++++.+||+ +..++.+ +.|||||||||+||++|+.+|++|+|||||+|||+.++..+
T Consensus 113 ~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~-----~~LSgGq~qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l 184 (287)
T PRK13641 113 NF---GFSEDEAKEKALKWLKKVGLSEDLISKSP-----FELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEM 184 (287)
T ss_pred Hc---CCCHHHHHHHHHHHHHHcCCChhHhhCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHH
Confidence 32 234455667899999999997 5666554 46999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCEEEEEecCChhHHHhhhceEEEecCCeEeeecChhhHH
Q 048028 151 VNVLQRIAKSGSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNETPSNLA 200 (592)
Q Consensus 151 ~~~l~~la~~g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~~~~~ 200 (592)
.+.|++++++|.|||+++|+++ ++.++||++++|++|+++..|+++++.
T Consensus 185 ~~~l~~l~~~g~tvlivsH~~~-~~~~~~d~v~~l~~G~i~~~g~~~~~~ 233 (287)
T PRK13641 185 MQLFKDYQKAGHTVILVTHNMD-DVAEYADDVLVLEHGKLIKHASPKEIF 233 (287)
T ss_pred HHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 9999999878999999999997 688999999999999999999988764
No 98
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=100.00 E-value=4.1e-38 Score=317.64 Aligned_cols=189 Identities=24% Similarity=0.395 Sum_probs=161.2
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCC---ceeEEEECCEecCc-----ccccceeEEEccCCCCCCCCCHHHHHHHHHHc
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKES---LQGAVTLNGEVLES-----KLLKIISAYVMQDDLLFPMLTVEETLMFAAEF 72 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~---~~G~I~i~g~~~~~-----~~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l 72 (592)
++|+||||||||||+|+|+|+.+|.+ .+|+|.++|+++.. ...++.++|++|++.+++ +||+||+.+....
T Consensus 30 ~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~e~l~~~~~~ 108 (247)
T TIGR00972 30 TALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVELRRRVGMVFQKPNPFP-MSIYDNIAYGPRL 108 (247)
T ss_pred EEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchHHHHhheEEEecCcccCC-CCHHHHHHhHHHh
Confidence 48999999999999999999987541 16999999998753 134567899999999998 9999999987654
Q ss_pred cCCCCCCHHHHHHHHHHHHHHcCCc----ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHH
Q 048028 73 RLPRSVTKTKKQERVEALINQLGLR----SAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAF 148 (592)
Q Consensus 73 ~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~ 148 (592)
+. ..+..+..++++++++.+||. +..++ .++.||||||||++||++|+.+|++++|||||+|||+.++.
T Consensus 109 ~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~ 181 (247)
T TIGR00972 109 HG--IKDKKELDEIVEESLKKAALWDEVKDRLHD-----SALGLSGGQQQRLCIARALAVEPEVLLLDEPTSALDPIATG 181 (247)
T ss_pred cC--CCCHHHHHHHHHHHHHHcCCCcchhhHhhC-----CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHH
Confidence 31 123445567789999999997 44444 34579999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCEEEEEecCChhHHHhhhceEEEecCCeEeeecChhhH
Q 048028 149 MVVNVLQRIAKSGSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNETPSNL 199 (592)
Q Consensus 149 ~i~~~l~~la~~g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~~~~ 199 (592)
.+.+.|+++++ ++|+|+++|+++ ++.+++|++++|++|++++.|+++++
T Consensus 182 ~l~~~l~~~~~-~~tiiivsH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~ 230 (247)
T TIGR00972 182 KIEELIQELKK-KYTIVIVTHNMQ-QAARISDRTAFFYDGELVEYGPTEQI 230 (247)
T ss_pred HHHHHHHHHHh-cCeEEEEecCHH-HHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 99999999987 489999999997 68899999999999999999998765
No 99
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=100.00 E-value=4.6e-38 Score=329.33 Aligned_cols=191 Identities=27% Similarity=0.431 Sum_probs=164.6
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCcc------cccceeEEEccCC--CCCCCCCHHHHHHHHHHc
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLESK------LLKIISAYVMQDD--LLFPMLTVEETLMFAAEF 72 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~~------~~~~~~~yv~Q~~--~l~~~lTV~E~l~f~~~l 72 (592)
++|+|+||||||||+++|+|++++ .+|+|.++|+++... ..++.++||+|++ .++|.+||.||+.+....
T Consensus 50 ~~lvG~sGsGKSTLlk~i~Gl~~p--~~G~I~~~G~~i~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~ 127 (331)
T PRK15079 50 LGVVGESGCGKSTFARAIIGLVKA--TDGEVAWLGKDLLGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRT 127 (331)
T ss_pred EEEECCCCCCHHHHHHHHHCCCCC--CCcEEEECCEECCcCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHH
Confidence 589999999999999999999875 469999999987531 2456799999997 689999999999987543
Q ss_pred cCCCCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHH
Q 048028 73 RLPRSVTKTKKQERVEALINQLGLR-SAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVV 151 (592)
Q Consensus 73 ~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~ 151 (592)
..+ ..++++.+++++++++.+||. +..+ .++++|||||||||+||+||+.+|++|++||||+|||+.++.+++
T Consensus 128 ~~~-~~~~~~~~~~~~~~l~~vgl~~~~~~-----~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~ 201 (331)
T PRK15079 128 YHP-KLSRQEVKDRVKAMMLKVGLLPNLIN-----RYPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVV 201 (331)
T ss_pred hcc-CCCHHHHHHHHHHHHHHcCCChHHhc-----CCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHH
Confidence 211 245566678889999999994 3444 445679999999999999999999999999999999999999999
Q ss_pred HHHHHHHHc-CCEEEEEecCChhHHHhhhceEEEecCCeEeeecChhhHH
Q 048028 152 NVLQRIAKS-GSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNETPSNLA 200 (592)
Q Consensus 152 ~~l~~la~~-g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~~~~~ 200 (592)
+.|+++.++ |.|+|++|||++ .+.+++||+++|++|+++..|+++++.
T Consensus 202 ~lL~~l~~~~~~til~iTHdl~-~~~~~~dri~vl~~G~ive~g~~~~i~ 250 (331)
T PRK15079 202 NLLQQLQREMGLSLIFIAHDLA-VVKHISDRVLVMYLGHAVELGTYDEVY 250 (331)
T ss_pred HHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 999999875 899999999997 588899999999999999999988763
No 100
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=100.00 E-value=5.9e-38 Score=314.34 Aligned_cols=188 Identities=31% Similarity=0.509 Sum_probs=160.9
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCcc--cccceeEEEccCCCCCCCCCHHHHHHHHHHccCCCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLESK--LLKIISAYVMQDDLLFPMLTVEETLMFAAEFRLPRSV 78 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~~--~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~~~~~ 78 (592)
++|+||||||||||+++|+|+.+|. +|+|.++|.++... ..++.++|++|++.+++.+|++||+.+....+ ..
T Consensus 30 ~~i~G~nGsGKSTLl~~l~G~~~p~--~G~i~~~g~~i~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~---~~ 104 (236)
T TIGR03864 30 VALLGPNGAGKSTLFSLLTRLYVAQ--EGQISVAGHDLRRAPRAALARLGVVFQQPTLDLDLSVRQNLRYHAALH---GL 104 (236)
T ss_pred EEEECCCCCCHHHHHHHHhCCcCCC--ceEEEECCEEcccCChhhhhhEEEeCCCCCCcccCcHHHHHHHHHHhc---CC
Confidence 4899999999999999999998754 59999999987532 22346899999999989999999998765443 23
Q ss_pred CHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 048028 79 TKTKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVNVLQRIA 158 (592)
Q Consensus 79 ~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~la 158 (592)
+..+..++++++++.+||++..++.++ .||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++
T Consensus 105 ~~~~~~~~~~~~l~~~gl~~~~~~~~~-----~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~ 179 (236)
T TIGR03864 105 SRAEARERIAALLARLGLAERADDKVR-----ELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAIVAHVRALC 179 (236)
T ss_pred CHHHHHHHHHHHHHHcCChhhhcCChh-----hCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHH
Confidence 344455678999999999877766554 599999999999999999999999999999999999999999999998
Q ss_pred H-cCCEEEEEecCChhHHHhhhceEEEecCCeEeeecChhhHH
Q 048028 159 K-SGSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNETPSNLA 200 (592)
Q Consensus 159 ~-~g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~~~~~ 200 (592)
+ +|+|+|+++|+++ ++. .+|++++|++|+++..|+++++.
T Consensus 180 ~~~~~tiii~sH~~~-~~~-~~d~i~~l~~G~i~~~~~~~~~~ 220 (236)
T TIGR03864 180 RDQGLSVLWATHLVD-EIE-ADDRLVVLHRGRVLADGAAAELR 220 (236)
T ss_pred HhCCCEEEEEecChh-hHh-hCCEEEEEeCCeEEEeCCHHHHH
Confidence 5 5899999999997 465 59999999999999999887664
No 101
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=100.00 E-value=5.4e-38 Score=318.61 Aligned_cols=188 Identities=27% Similarity=0.447 Sum_probs=161.9
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCc----------------ccccceeEEEccCCCCCCCCCHHH
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLES----------------KLLKIISAYVMQDDLLFPMLTVEE 64 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~----------------~~~~~~~~yv~Q~~~l~~~lTV~E 64 (592)
++|+||||||||||+++|+|+.++. +|+|.++|+++.. ...++.++|++|++.+++.+||+|
T Consensus 34 ~~l~G~nGsGKSTLl~~i~G~~~~~--~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~e 111 (257)
T PRK10619 34 ISIIGSSGSGKSTFLRCINFLEKPS--EGSIVVNGQTINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLE 111 (257)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCCC--CeEEEECCEEcccccccccccccccchHHHHHhhceEEEecCcccCCCCcHHH
Confidence 5899999999999999999998754 5999999987642 123567899999999999999999
Q ss_pred HHHHHHH-ccCCCCCCHHHHHHHHHHHHHHcCCcccc-cccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCC
Q 048028 65 TLMFAAE-FRLPRSVTKTKKQERVEALINQLGLRSAA-KTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGL 142 (592)
Q Consensus 65 ~l~f~~~-l~~~~~~~~~~~~~~v~~~l~~lgL~~~~-~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgL 142 (592)
|+.++.. .. ...+.+.++++.++++.+|+.+.. ++ .++.||||||||++||++|+.+|++++|||||+||
T Consensus 112 nl~~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~~LS~G~~qrv~laral~~~p~llllDEPt~~L 183 (257)
T PRK10619 112 NVMEAPIQVL---GLSKQEARERAVKYLAKVGIDERAQGK-----YPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSAL 183 (257)
T ss_pred HHHHHHHHhC---CCCHHHHHHHHHHHHHHcCCChhhhhC-----CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccC
Confidence 9987542 21 233455567889999999997653 43 34579999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHcCCEEEEEecCChhHHHhhhceEEEecCCeEeeecChhhH
Q 048028 143 DSTSAFMVVNVLQRIAKSGSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNETPSNL 199 (592)
Q Consensus 143 D~~~~~~i~~~l~~la~~g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~~~~ 199 (592)
|+.++..+.+.|++++++|+|||+++|+++ ++.++|||+++|++|++++.|+++++
T Consensus 184 D~~~~~~l~~~l~~l~~~g~tiiivsH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~ 239 (257)
T PRK10619 184 DPELVGEVLRIMQQLAEEGKTMVVVTHEMG-FARHVSSHVIFLHQGKIEEEGAPEQL 239 (257)
T ss_pred CHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEECCEEEEeCCHHHh
Confidence 999999999999999888999999999997 58889999999999999999988765
No 102
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6e-38 Score=316.95 Aligned_cols=195 Identities=25% Similarity=0.359 Sum_probs=162.1
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCC---CceeEEEECCEecCc---ccccceeEEEccCCCCCCCCCHHHHHHHHHHccC
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKE---SLQGAVTLNGEVLES---KLLKIISAYVMQDDLLFPMLTVEETLMFAAEFRL 74 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~---~~~G~I~i~g~~~~~---~~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~ 74 (592)
++|+||||||||||+++|+|+.++. +.+|+|.++|.++.. ...++.++|++|++.+++.+||+||+.+....+.
T Consensus 32 ~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~ 111 (250)
T PRK14247 32 TALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIELRRRVQMVFQIPNPIPNLSIFENVALGLKLNR 111 (250)
T ss_pred EEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHHHhccEEEEeccCccCCCCcHHHHHHHHHHhcc
Confidence 4899999999999999999998742 357999999998753 2345678999999988999999999998754321
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHH
Q 048028 75 PRSVTKTKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVNVL 154 (592)
Q Consensus 75 ~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l 154 (592)
. ..+..+..++++++++.+||.+..+... +..+..|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|
T Consensus 112 ~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LSgG~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l 189 (250)
T PRK14247 112 L-VKSKKELQERVRWALEKAQLWDEVKDRL-DAPAGKLSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIESLF 189 (250)
T ss_pred c-cCCHHHHHHHHHHHHHHcCCCcchhhhh-cCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHH
Confidence 1 1133445577899999999864221111 3345679999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCEEEEEecCChhHHHhhhceEEEecCCeEeeecChhhH
Q 048028 155 QRIAKSGSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNETPSNL 199 (592)
Q Consensus 155 ~~la~~g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~~~~ 199 (592)
+++++ |+|+|+++|+++ ++.+.+|++++|++|+++..|+++++
T Consensus 190 ~~~~~-~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~ 232 (250)
T PRK14247 190 LELKK-DMTIVLVTHFPQ-QAARISDYVAFLYKGQIVEWGPTREV 232 (250)
T ss_pred HHHhc-CCEEEEEeCCHH-HHHHhcCEEEEEECCeEEEECCHHHH
Confidence 99965 899999999997 57889999999999999999998776
No 103
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5e-38 Score=314.05 Aligned_cols=189 Identities=25% Similarity=0.447 Sum_probs=161.6
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCcc-cccceeEEEccCCCCCCCCCHHHHHHHHHHccCCCCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLESK-LLKIISAYVMQDDLLFPMLTVEETLMFAAEFRLPRSVT 79 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~~-~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~ 79 (592)
++|+||||||||||+++|+|+.++ .+|+|.++|+++... ..++.++|++|++.+++.+|+.||+.+..... ...
T Consensus 28 ~~l~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~--~~~- 102 (232)
T PRK10771 28 VAILGPSGAGKSTLLNLIAGFLTP--ASGSLTLNGQDHTTTPPSRRPVSMLFQENNLFSHLTVAQNIGLGLNPG--LKL- 102 (232)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCeecCcCChhhccEEEEecccccccCCcHHHHHhcccccc--cCC-
Confidence 489999999999999999999875 459999999987532 22456899999999999999999998753211 011
Q ss_pred HHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Q 048028 80 KTKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVNVLQRIAK 159 (592)
Q Consensus 80 ~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~la~ 159 (592)
.+..+++++++++.+||++..++.+ +.||||||||++||++++.+|++++|||||+|||+.++..+.+.|+++++
T Consensus 103 ~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~ 177 (232)
T PRK10771 103 NAAQREKLHAIARQMGIEDLLARLP-----GQLSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQ 177 (232)
T ss_pred CHHHHHHHHHHHHHcCcHHHHhCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH
Confidence 2234567899999999988777665 46999999999999999999999999999999999999999999999986
Q ss_pred c-CCEEEEEecCChhHHHhhhceEEEecCCeEeeecChhhHH
Q 048028 160 S-GSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNETPSNLA 200 (592)
Q Consensus 160 ~-g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~~~~~ 200 (592)
+ |+|+|+++|++. ++.+++|++++|++|++++.|+++++.
T Consensus 178 ~~~~tiii~sH~~~-~~~~~~d~i~~l~~g~i~~~g~~~~~~ 218 (232)
T PRK10771 178 ERQLTLLMVSHSLE-DAARIAPRSLVVADGRIAWDGPTDELL 218 (232)
T ss_pred hcCCEEEEEECCHH-HHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 4 899999999997 688899999999999999999887653
No 104
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=3.5e-38 Score=310.51 Aligned_cols=178 Identities=33% Similarity=0.511 Sum_probs=152.0
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCc---ccccceeEEEccCCC-CCCCCCHHHHHHHHHHccCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLES---KLLKIISAYVMQDDL-LFPMLTVEETLMFAAEFRLPR 76 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~---~~~~~~~~yv~Q~~~-l~~~lTV~E~l~f~~~l~~~~ 76 (592)
++|+||||||||||+++|+|+.++ .+|+|.++|+++.. ...++.++|++|++. .++.+||+||+.+....+
T Consensus 30 ~~l~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~~t~~~~l~~~~~~~--- 104 (211)
T cd03225 30 VLIVGPNGSGKSTLLRLLNGLLGP--TSGEVLVDGKDLTKLSLKELRRKVGLVFQNPDDQFFGPTVEEEVAFGLENL--- 104 (211)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCC--CCceEEECCEEcccCCHHHHHhhceEEecChhhhcCCCcHHHHHHHHHHHc---
Confidence 489999999999999999999875 45999999998753 234567899999974 466789999998865432
Q ss_pred CCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHH
Q 048028 77 SVTKTKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVNVLQR 156 (592)
Q Consensus 77 ~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~ 156 (592)
.....+.+++++++++.+||.+..++.+ +.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|++
T Consensus 105 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~ 179 (211)
T cd03225 105 GLPEEEIEERVEEALELVGLEGLRDRSP-----FTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRELLELLKK 179 (211)
T ss_pred CCCHHHHHHHHHHHHHHcCcHhhhcCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHH
Confidence 1233445567899999999987666554 46999999999999999999999999999999999999999999999
Q ss_pred HHHcCCEEEEEecCChhHHHhhhceEEEecCCe
Q 048028 157 IAKSGSIVIMSIHQPSYRILSLLDRLIILSHGQ 189 (592)
Q Consensus 157 la~~g~tvi~~~H~~~~~i~~~~D~v~ll~~G~ 189 (592)
++++|+|||+++|+++ ++..+||++++|++|+
T Consensus 180 ~~~~~~tvi~~sH~~~-~~~~~~d~i~~l~~G~ 211 (211)
T cd03225 180 LKAEGKTIIIVTHDLD-LLLELADRVIVLEDGK 211 (211)
T ss_pred HHHcCCEEEEEeCCHH-HHHHhCCEEEEEeCCC
Confidence 9888999999999987 6888899999999885
No 105
>PRK10908 cell division protein FtsE; Provisional
Probab=100.00 E-value=5.6e-38 Score=311.56 Aligned_cols=180 Identities=27% Similarity=0.417 Sum_probs=156.0
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCcc------cccceeEEEccCCCCCCCCCHHHHHHHHHHccC
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLESK------LLKIISAYVMQDDLLFPMLTVEETLMFAAEFRL 74 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~~------~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~ 74 (592)
++|+||||||||||+++|+|+.++ .+|+|.++|+++... ..++.++|++|++.+++.+||+||+.+....+
T Consensus 31 ~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~i~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~- 107 (222)
T PRK10908 31 AFLTGHSGAGKSTLLKLICGIERP--SAGKIWFSGHDITRLKNREVPFLRRQIGMIFQDHHLLMDRTVYDNVAIPLIIA- 107 (222)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEEcccCChhHHHHHHhheEEEecCccccccccHHHHHHhHHHhc-
Confidence 489999999999999999999875 469999999987531 13567899999999889999999998875443
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHH
Q 048028 75 PRSVTKTKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVNVL 154 (592)
Q Consensus 75 ~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l 154 (592)
..+.++.+++++++++.+++.+..++.+ +.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|
T Consensus 108 --~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l 180 (222)
T PRK10908 108 --GASGDDIRRRVSAALDKVGLLDKAKNFP-----IQLSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLF 180 (222)
T ss_pred --CCCHHHHHHHHHHHHHHcCChhhhhCCc-----hhCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHH
Confidence 2334445567889999999987666554 469999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCEEEEEecCChhHHHhhhceEEEecCCeEe
Q 048028 155 QRIAKSGSIVIMSIHQPSYRILSLLDRLIILSHGQSV 191 (592)
Q Consensus 155 ~~la~~g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v 191 (592)
++++++|.|+|+++|+++ ++...+|++++|++|+++
T Consensus 181 ~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~ 216 (222)
T PRK10908 181 EEFNRVGVTVLMATHDIG-LISRRSYRMLTLSDGHLH 216 (222)
T ss_pred HHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEc
Confidence 999877899999999997 588899999999999975
No 106
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.1e-38 Score=323.58 Aligned_cols=188 Identities=25% Similarity=0.425 Sum_probs=161.4
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCc-------ccccceeEEEccCC--CCCCCCCHHHHHHHHHH
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLES-------KLLKIISAYVMQDD--LLFPMLTVEETLMFAAE 71 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~-------~~~~~~~~yv~Q~~--~l~~~lTV~E~l~f~~~ 71 (592)
++|+||||||||||+++|+|+.++. +|+|.++|+++.. ...++.+|||+|++ .+++ .||.||+.|...
T Consensus 36 ~~i~G~nGsGKSTLl~~L~Gl~~p~--~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~-~tv~e~i~~~~~ 112 (286)
T PRK13646 36 YAIVGQTGSGKSTLIQNINALLKPT--TGTVTVDDITITHKTKDKYIRPVRKRIGMVFQFPESQLFE-DTVEREIIFGPK 112 (286)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCCC--CcEEEECCEECccccccchHHHHHhheEEEecChHhccch-hhHHHHHHhhHH
Confidence 5899999999999999999998754 5999999998743 13466799999986 4665 499999998754
Q ss_pred ccCCCCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHH
Q 048028 72 FRLPRSVTKTKKQERVEALINQLGLR-SAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMV 150 (592)
Q Consensus 72 l~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i 150 (592)
.. ..++.+.+++++++++.+||. +..++. ++.|||||||||+||++|+.+|++|+|||||+|||+.++..+
T Consensus 113 ~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~~LSgGq~qrv~laraL~~~p~illlDEPt~~LD~~~~~~l 184 (286)
T PRK13646 113 NF---KMNLDEVKNYAHRLLMDLGFSRDVMSQS-----PFQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQV 184 (286)
T ss_pred Hc---CCCHHHHHHHHHHHHHHcCCChhhhhCC-----cccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHH
Confidence 32 234556667899999999996 556544 456999999999999999999999999999999999999999
Q ss_pred HHHHHHHHH-cCCEEEEEecCChhHHHhhhceEEEecCCeEeeecChhhHH
Q 048028 151 VNVLQRIAK-SGSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNETPSNLA 200 (592)
Q Consensus 151 ~~~l~~la~-~g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~~~~~ 200 (592)
.+.|+++++ .|+|||+++|+++ ++.+++||+++|++|++++.|+++++.
T Consensus 185 ~~~l~~l~~~~g~tvl~vtH~~~-~~~~~~dri~~l~~G~i~~~g~~~~~~ 234 (286)
T PRK13646 185 MRLLKSLQTDENKTIILVSHDMN-EVARYADEVIVMKEGSIVSQTSPKELF 234 (286)
T ss_pred HHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 999999986 4899999999997 588899999999999999999988763
No 107
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=100.00 E-value=6e-38 Score=312.34 Aligned_cols=184 Identities=27% Similarity=0.463 Sum_probs=152.7
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCc------ccccceeEEEccCC--CCCCCCCHHHHHHHHHHc
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLES------KLLKIISAYVMQDD--LLFPMLTVEETLMFAAEF 72 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~------~~~~~~~~yv~Q~~--~l~~~lTV~E~l~f~~~l 72 (592)
++|+|||||||||||++|+|..++. +|+|.++|+++.. ...++.++|++|++ .+++.+||+||+.+....
T Consensus 34 ~~i~G~nGsGKSTLl~~l~G~~~~~--~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~ 111 (228)
T cd03257 34 LGLVGESGSGKSTLARAILGLLKPT--SGSIIFDGKDLLKLSRRLRKIRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRI 111 (228)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCCC--CceEEECCEEccccchhhHHHhhccEEEEecCchhhcCCcCCHHHHHHHHHHh
Confidence 5899999999999999999998754 5999999998753 23456789999998 577889999999886544
Q ss_pred cCCCCCCHHHHHHH-HHHHHHHcCCc-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHH
Q 048028 73 RLPRSVTKTKKQER-VEALINQLGLR-SAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMV 150 (592)
Q Consensus 73 ~~~~~~~~~~~~~~-v~~~l~~lgL~-~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i 150 (592)
..+ ....+..++ ++++++.+++. +..++.+ ..|||||||||+||++|+.+|++|+|||||+|||+.++..+
T Consensus 112 ~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l 184 (228)
T cd03257 112 HGK--LSKKEARKEAVLLLLVGVGLPEEVLNRYP-----HELSGGQRQRVAIARALALNPKLLIADEPTSALDVSVQAQI 184 (228)
T ss_pred ccC--CcHHHHHHHHHHHHHHHCCCChhHhhCCc-----hhcCHHHHHHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHH
Confidence 321 111222222 36899999995 4555544 56999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHc-CCEEEEEecCChhHHHhhhceEEEecCCeEeeec
Q 048028 151 VNVLQRIAKS-GSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNE 194 (592)
Q Consensus 151 ~~~l~~la~~-g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g 194 (592)
.+.|++++++ |+|||+++|+++ ++.+++|++++|++|+++..|
T Consensus 185 ~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~G~i~~~g 228 (228)
T cd03257 185 LDLLKKLQEELGLTLLFITHDLG-VVAKIADRVAVMYAGKIVEEG 228 (228)
T ss_pred HHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCeEEEEeCCEEEecC
Confidence 9999999876 899999999997 577899999999999998654
No 108
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=100.00 E-value=4.1e-38 Score=310.33 Aligned_cols=180 Identities=29% Similarity=0.493 Sum_probs=155.0
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCc-----ccccceeEEEccCCCCCCCCCHHHHHHHHHHccCC
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLES-----KLLKIISAYVMQDDLLFPMLTVEETLMFAAEFRLP 75 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~-----~~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~~ 75 (592)
++|+|||||||||||++|+|+.++. +|+|.++|+++.. ...++.++|++|++.+++.+|++||+.+.....
T Consensus 29 ~~l~G~nGsGKSTLl~~l~G~~~~~--~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~-- 104 (213)
T cd03262 29 VVIIGPSGSGKSTLLRCINLLEEPD--SGTIIIDGLKLTDDKKNINELRQKVGMVFQQFNLFPHLTVLENITLAPIKV-- 104 (213)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCCC--CceEEECCEECCccchhHHHHHhcceEEecccccCCCCcHHHHHHhHHHHh--
Confidence 4899999999999999999998754 5999999998742 234567899999999999999999998864311
Q ss_pred CCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHH
Q 048028 76 RSVTKTKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVNVLQ 155 (592)
Q Consensus 76 ~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~ 155 (592)
......+.+++++++++.+|+++..++.+ +.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+
T Consensus 105 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~ 179 (213)
T cd03262 105 KGMSKAEAEERALELLEKVGLADKADAYP-----AQLSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELVGEVLDVMK 179 (213)
T ss_pred cCCCHHHHHHHHHHHHHHcCCHhHhhhCc-----cccCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHH
Confidence 12234455677899999999987776654 5699999999999999999999999999999999999999999999
Q ss_pred HHHHcCCEEEEEecCChhHHHhhhceEEEecCCeE
Q 048028 156 RIAKSGSIVIMSIHQPSYRILSLLDRLIILSHGQS 190 (592)
Q Consensus 156 ~la~~g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~ 190 (592)
+++++|+|||+++|+++ ++.+++|++++|++|++
T Consensus 180 ~~~~~~~tvi~~sh~~~-~~~~~~d~i~~l~~g~i 213 (213)
T cd03262 180 DLAEEGMTMVVVTHEMG-FAREVADRVIFMDDGRI 213 (213)
T ss_pred HHHHcCCEEEEEeCCHH-HHHHhCCEEEEEeCCcC
Confidence 99888899999999997 68889999999999974
No 109
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.8e-38 Score=321.33 Aligned_cols=189 Identities=25% Similarity=0.426 Sum_probs=162.2
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCc-----ccccceeEEEccCCC-CCCCCCHHHHHHHHHHccC
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLES-----KLLKIISAYVMQDDL-LFPMLTVEETLMFAAEFRL 74 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~-----~~~~~~~~yv~Q~~~-l~~~lTV~E~l~f~~~l~~ 74 (592)
++|+||||||||||+++|+|+.++ .+|+|.++|+++.. ...++.++|++|++. .+...||+||+.+.....
T Consensus 35 ~~i~G~nGaGKSTLl~~i~Gl~~p--~~G~i~i~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~- 111 (283)
T PRK13636 35 TAILGGNGAGKSTLFQNLNGILKP--SSGRILFDGKPIDYSRKGLMKLRESVGMVFQDPDNQLFSASVYQDVSFGAVNL- 111 (283)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCC--CccEEEECCEECCCCcchHHHHHhhEEEEecCcchhhccccHHHHHHhHHHHc-
Confidence 589999999999999999999875 45999999998741 234567999999973 334579999998865432
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHH
Q 048028 75 PRSVTKTKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVNVL 154 (592)
Q Consensus 75 ~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l 154 (592)
..+..+.+++++++++.+||.+..++.+ +.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|
T Consensus 112 --~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LS~G~~qrl~laraL~~~p~lLilDEPt~gLD~~~~~~l~~~l 184 (283)
T PRK13636 112 --KLPEDEVRKRVDNALKRTGIEHLKDKPT-----HCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLL 184 (283)
T ss_pred --CCCHHHHHHHHHHHHHHCCChhhhhCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHH
Confidence 2345555678999999999988776554 569999999999999999999999999999999999999999999
Q ss_pred HHHHHc-CCEEEEEecCChhHHHhhhceEEEecCCeEeeecChhhHH
Q 048028 155 QRIAKS-GSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNETPSNLA 200 (592)
Q Consensus 155 ~~la~~-g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~~~~~ 200 (592)
++++++ |+|||+++|+++ ++.++|||+++|++|++++.|+++++.
T Consensus 185 ~~l~~~~g~tillvsH~~~-~~~~~~dri~~l~~G~i~~~g~~~~~~ 230 (283)
T PRK13636 185 VEMQKELGLTIIIATHDID-IVPLYCDNVFVMKEGRVILQGNPKEVF 230 (283)
T ss_pred HHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 999875 899999999997 577899999999999999999998764
No 110
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=100.00 E-value=5.5e-38 Score=311.26 Aligned_cols=179 Identities=27% Similarity=0.462 Sum_probs=152.5
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCccc------cc-ceeEEEccCCCCCCCCCHHHHHHHHHHcc
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLESKL------LK-IISAYVMQDDLLFPMLTVEETLMFAAEFR 73 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~~~------~~-~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~ 73 (592)
++|+|||||||||||++|+|..++. +|+|.++|+++.... .+ +.++|++|++.+++.+||+||+.+....+
T Consensus 34 ~~i~G~nGsGKSTLl~~i~G~~~~~--~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~ 111 (221)
T TIGR02211 34 VAIVGSSGSGKSTLLHLLGGLDNPT--SGEVLFNGQSLSKLSSNERAKLRNKKLGFIYQFHHLLPDFTALENVAMPLLIG 111 (221)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCCC--CcEEEECCEEhhhcCHhHHHHHHHhcEEEEecccccCCCCcHHHHHHHHHHhc
Confidence 4899999999999999999998754 599999999875311 12 56899999999999999999998865433
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHH
Q 048028 74 LPRSVTKTKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVNV 153 (592)
Q Consensus 74 ~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~ 153 (592)
.....+..+++.++++.+|+++..++.+ +.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.
T Consensus 112 ---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~ 183 (221)
T TIGR02211 112 ---KKSVKEAKERAYEMLEKVGLEHRINHRP-----SELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDL 183 (221)
T ss_pred ---CCCHHHHHHHHHHHHHHcCChhhhhCCh-----hhCCHHHHHHHHHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHH
Confidence 1233444567889999999987766554 46999999999999999999999999999999999999999999
Q ss_pred HHHHHHc-CCEEEEEecCChhHHHhhhceEEEecCCeEe
Q 048028 154 LQRIAKS-GSIVIMSIHQPSYRILSLLDRLIILSHGQSV 191 (592)
Q Consensus 154 l~~la~~-g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v 191 (592)
|++++++ |+|||+++|+++ ++ +.+|++++|++|+++
T Consensus 184 l~~~~~~~~~tii~~tH~~~-~~-~~~d~v~~l~~G~i~ 220 (221)
T TIGR02211 184 MLELNRELNTSFLVVTHDLE-LA-KKLDRVLEMKDGQLF 220 (221)
T ss_pred HHHHHHhcCCEEEEEeCCHH-HH-hhcCEEEEEeCCEec
Confidence 9999864 899999999997 45 457999999999875
No 111
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.7e-38 Score=315.21 Aligned_cols=186 Identities=27% Similarity=0.473 Sum_probs=159.1
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCcc----cccceeEEEccCCCCCCCCCHHHHHHHHHHccCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLESK----LLKIISAYVMQDDLLFPMLTVEETLMFAAEFRLPR 76 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~~----~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~~~ 76 (592)
++|+||||||||||+++|+|..++ .+|+|.++|+++... ..++.++|++|++.+++.+||+||+.+.....
T Consensus 34 ~~i~G~nGsGKSTLl~~l~G~~~p--~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~--- 108 (237)
T PRK11614 34 VTLIGANGAGKTTLLGTLCGDPRA--TSGRIVFDGKDITDWQTAKIMREAVAIVPEGRRVFSRMTVEENLAMGGFFA--- 108 (237)
T ss_pred EEEECCCCCCHHHHHHHHcCCCCC--CCceEEECCEecCCCCHHHHHHhCEEEeccCcccCCCCcHHHHHHHhhhcc---
Confidence 489999999999999999999875 459999999987542 23556899999999999999999998864321
Q ss_pred CCCHHHHHHHHHHHHHHc-CCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHH
Q 048028 77 SVTKTKKQERVEALINQL-GLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVNVLQ 155 (592)
Q Consensus 77 ~~~~~~~~~~v~~~l~~l-gL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~ 155 (592)
...+.+++++++++.+ ++.+..++. ++.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+
T Consensus 109 --~~~~~~~~~~~~l~~~~~l~~~~~~~-----~~~LS~G~~qrl~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~ 181 (237)
T PRK11614 109 --ERDQFQERIKWVYELFPRLHERRIQR-----AGTMSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIE 181 (237)
T ss_pred --ChhHHHHHHHHHHHHHHHHHHHHhCc-----hhhCCHHHHHHHHHHHHHHhCCCEEEEcCccccCCHHHHHHHHHHHH
Confidence 1223345677788888 576655544 45699999999999999999999999999999999999999999999
Q ss_pred HHHHcCCEEEEEecCChhHHHhhhceEEEecCCeEeeecChhhH
Q 048028 156 RIAKSGSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNETPSNL 199 (592)
Q Consensus 156 ~la~~g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~~~~ 199 (592)
+++++|+|||+++|+++ ++.+++||+++|++|++++.|+++++
T Consensus 182 ~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~ 224 (237)
T PRK11614 182 QLREQGMTIFLVEQNAN-QALKLADRGYVLENGHVVLEDTGDAL 224 (237)
T ss_pred HHHHCCCEEEEEeCcHH-HHHhhCCEEEEEeCCEEEeeCCHHHH
Confidence 99888999999999987 68899999999999999999998876
No 112
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.1e-38 Score=320.89 Aligned_cols=188 Identities=28% Similarity=0.429 Sum_probs=162.7
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCcc---cccceeEEEccCC-CCCCCCCHHHHHHHHHHccCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLESK---LLKIISAYVMQDD-LLFPMLTVEETLMFAAEFRLPR 76 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~~---~~~~~~~yv~Q~~-~l~~~lTV~E~l~f~~~l~~~~ 76 (592)
++|+||||||||||+++|+|+.+|. +|+|.++|+++... ..++.++|++|++ .+++.+||.||+.+.....
T Consensus 36 ~~i~G~nGaGKSTLl~~i~G~~~p~--~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~~~~tv~enl~~~~~~~--- 110 (279)
T PRK13635 36 VAIVGHNGSGKSTLAKLLNGLLLPE--AGTITVGGMVLSEETVWDVRRQVGMVFQNPDNQFVGATVQDDVAFGLENI--- 110 (279)
T ss_pred EEEECCCCCcHHHHHHHHhcCCCCC--CcEEEECCEECCcCcHHHHhhheEEEEeCHHHhcccccHHHHHhhhHhhC---
Confidence 4899999999999999999998864 59999999987542 3456789999997 4677789999998875432
Q ss_pred CCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHH
Q 048028 77 SVTKTKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVNVLQR 156 (592)
Q Consensus 77 ~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~ 156 (592)
..+.++.+++++++++.+||++..++.++ .|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|++
T Consensus 111 ~~~~~~~~~~~~~~l~~~gL~~~~~~~~~-----~LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~ 185 (279)
T PRK13635 111 GVPREEMVERVDQALRQVGMEDFLNREPH-----RLSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQ 185 (279)
T ss_pred CCCHHHHHHHHHHHHHHcCChhhhhCCcc-----cCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 23445556789999999999987776654 6999999999999999999999999999999999999999999999
Q ss_pred HHHc-CCEEEEEecCChhHHHhhhceEEEecCCeEeeecChhhHH
Q 048028 157 IAKS-GSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNETPSNLA 200 (592)
Q Consensus 157 la~~-g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~~~~~ 200 (592)
++++ |+|||+++|+++ ++. .+||+++|++|++++.|+++++.
T Consensus 186 l~~~~~~tilivsH~~~-~~~-~~d~i~~l~~G~i~~~g~~~~~~ 228 (279)
T PRK13635 186 LKEQKGITVLSITHDLD-EAA-QADRVIVMNKGEILEEGTPEEIF 228 (279)
T ss_pred HHHcCCCEEEEEecCHH-HHH-cCCEEEEEECCEEEEECCHHHHh
Confidence 9876 899999999997 465 59999999999999999988764
No 113
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.6e-38 Score=315.11 Aligned_cols=188 Identities=27% Similarity=0.456 Sum_probs=160.8
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCc---------ccccceeEEEccCCCCCCCCCHHHHHHHH-H
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLES---------KLLKIISAYVMQDDLLFPMLTVEETLMFA-A 70 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~---------~~~~~~~~yv~Q~~~l~~~lTV~E~l~f~-~ 70 (592)
++|+||||||||||+|+|+|+.++ .+|+|.++|+++.. ...++.++|++|++.+++.+||.||+.+. .
T Consensus 31 ~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~i~~~~~ 108 (242)
T PRK11124 31 LVLLGPSGAGKSSLLRVLNLLEMP--RSGTLNIAGNHFDFSKTPSDKAIRELRRNVGMVFQQYNLWPHLTVQQNLIEAPC 108 (242)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEecccccccchhhHHHHHhheEEEecCccccCCCcHHHHHHHHHH
Confidence 489999999999999999999875 45999999997631 12356789999999999999999999753 2
Q ss_pred HccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHH
Q 048028 71 EFRLPRSVTKTKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMV 150 (592)
Q Consensus 71 ~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i 150 (592)
... .....+..++++++++.+|+++..++.+ +.||||||||++||++|+.+|++++|||||+|||+.++..+
T Consensus 109 ~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~G~~qrv~laral~~~p~llilDEPt~~LD~~~~~~l 180 (242)
T PRK11124 109 RVL---GLSKDQALARAEKLLERLRLKPYADRFP-----LHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQI 180 (242)
T ss_pred HHc---CCCHHHHHHHHHHHHHHcCChhhhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCcCCHHHHHHH
Confidence 221 1233444567899999999987776654 46999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCEEEEEecCChhHHHhhhceEEEecCCeEeeecChhhH
Q 048028 151 VNVLQRIAKSGSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNETPSNL 199 (592)
Q Consensus 151 ~~~l~~la~~g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~~~~ 199 (592)
.+.|++++++|+|+|+++|++. ++.+++|++++|++|++++.|+++++
T Consensus 181 ~~~l~~~~~~~~tii~~sh~~~-~~~~~~d~i~~l~~g~i~~~~~~~~~ 228 (242)
T PRK11124 181 VSIIRELAETGITQVIVTHEVE-VARKTASRVVYMENGHIVEQGDASCF 228 (242)
T ss_pred HHHHHHHHHcCCEEEEEeCCHH-HHHHhcCEEEEEECCEEEEeCCHHHh
Confidence 9999999877999999999997 57789999999999999999987654
No 114
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=100.00 E-value=7.9e-38 Score=312.25 Aligned_cols=191 Identities=22% Similarity=0.351 Sum_probs=160.3
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCC--CceeEEEECCEecCcccc-cceeEEEccCCC--CCCCCCHHHHHHHHHHccCC
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKE--SLQGAVTLNGEVLESKLL-KIISAYVMQDDL--LFPMLTVEETLMFAAEFRLP 75 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~--~~~G~I~i~g~~~~~~~~-~~~~~yv~Q~~~--l~~~lTV~E~l~f~~~l~~~ 75 (592)
++|+||||||||||+|+|+|+.++. +.+|+|.++|+++..... ++.++|++|++. +++.+|+.|++.+......
T Consensus 15 ~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~~t~~~~~~~~~~~~~- 93 (230)
T TIGR02770 15 LALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNPLFTMGNHAIETLRSLG- 93 (230)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhhhhhhheeEEEecCchhhcCcccCHHHHHHHHHHHcC-
Confidence 4899999999999999999998751 146999999998764333 356899999984 6678899999987654321
Q ss_pred CCCCHHHHHHHHHHHHHHcCCcc---cccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHH
Q 048028 76 RSVTKTKKQERVEALINQLGLRS---AAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVN 152 (592)
Q Consensus 76 ~~~~~~~~~~~v~~~l~~lgL~~---~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~ 152 (592)
....+.+++++++++.+++.+ ..++. ++.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+
T Consensus 94 --~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----~~~LS~G~~qrv~laral~~~p~vllLDEPt~~LD~~~~~~l~~ 166 (230)
T TIGR02770 94 --KLSKQARALILEALEAVGLPDPEEVLKKY-----PFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLK 166 (230)
T ss_pred --ccHHHHHHHHHHHHHHcCCCchHHHHhCC-----hhhcCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHH
Confidence 122344567899999999973 34443 45699999999999999999999999999999999999999999
Q ss_pred HHHHHHHc-CCEEEEEecCChhHHHhhhceEEEecCCeEeeecChhhHH
Q 048028 153 VLQRIAKS-GSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNETPSNLA 200 (592)
Q Consensus 153 ~l~~la~~-g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~~~~~ 200 (592)
.|++++++ |+|||+++|+++ ++..++|++++|++|+++..|+++++.
T Consensus 167 ~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~~ 214 (230)
T TIGR02770 167 LLRELRQLFGTGILLITHDLG-VVARIADEVAVMDDGRIVERGTVKEIF 214 (230)
T ss_pred HHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 99999875 899999999997 688899999999999999999987763
No 115
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.2e-38 Score=317.26 Aligned_cols=191 Identities=24% Similarity=0.454 Sum_probs=160.6
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCcc---c-ccceeEEEccCCCCCCCCCHHHHHHHHHHccCC-
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLESK---L-LKIISAYVMQDDLLFPMLTVEETLMFAAEFRLP- 75 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~~---~-~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~~- 75 (592)
++|+||||||||||+++|+|+.++. +|+|.++|.++... . .+..++|++|++.+++.+||+||+.++......
T Consensus 34 ~~l~G~nGsGKSTLl~~l~Gl~~~~--~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~ 111 (255)
T PRK11300 34 VSLIGPNGAGKTTVFNCLTGFYKPT--GGTILLRGQHIEGLPGHQIARMGVVRTFQHVRLFREMTVIENLLVAQHQQLKT 111 (255)
T ss_pred EEEECCCCCCHHHHHHHHhCCcCCC--cceEEECCEECCCCCHHHHHhcCeEEeccCcccCCCCcHHHHHHHhhhccccc
Confidence 4899999999999999999998754 59999999987532 1 234578999999999999999999986432110
Q ss_pred ---------CCC--CHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCH
Q 048028 76 ---------RSV--TKTKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDS 144 (592)
Q Consensus 76 ---------~~~--~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~ 144 (592)
... ...+..++++++++.+||.+..++.+ +.||||||||++||++|+.+|++|+|||||+|||+
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~ 186 (255)
T PRK11300 112 GLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANRQA-----GNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNP 186 (255)
T ss_pred hhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCH
Confidence 000 11233457888999999987776555 46999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHc-CCEEEEEecCChhHHHhhhceEEEecCCeEeeecChhhH
Q 048028 145 TSAFMVVNVLQRIAKS-GSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNETPSNL 199 (592)
Q Consensus 145 ~~~~~i~~~l~~la~~-g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~~~~ 199 (592)
.++..+.+.|++++++ |+|||+++|+++ ++.++||++++|++|++++.|+++++
T Consensus 187 ~~~~~l~~~L~~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~g~i~~~~~~~~~ 241 (255)
T PRK11300 187 KETKELDELIAELRNEHNVTVLLIEHDMK-LVMGISDRIYVVNQGTPLANGTPEEI 241 (255)
T ss_pred HHHHHHHHHHHHHHhhcCCEEEEEeCCHH-HHHHhCCEEEEEECCeEEecCCHHHH
Confidence 9999999999999875 899999999997 68899999999999999999998765
No 116
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.1e-37 Score=320.28 Aligned_cols=187 Identities=26% Similarity=0.427 Sum_probs=159.1
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCc-------ccccceeEEEccCC--CCCCCCCHHHHHHHHHH
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLES-------KLLKIISAYVMQDD--LLFPMLTVEETLMFAAE 71 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~-------~~~~~~~~yv~Q~~--~l~~~lTV~E~l~f~~~ 71 (592)
++|+|||||||||||++|+|+.+| .+|+|.++|+++.. ...++.++|++|++ .+++ .||+||+.+...
T Consensus 36 ~~l~G~nGsGKSTLl~~i~Gl~~p--~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~~~q~~~~~~~~-~tv~e~l~~~~~ 112 (280)
T PRK13649 36 TAFIGHTGSGKSTIMQLLNGLHVP--TQGSVRVDDTLITSTSKNKDIKQIRKKVGLVFQFPESQLFE-ETVLKDVAFGPQ 112 (280)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEEccccccccCHHHHHhheEEEeeChhhhhcc-ccHHHHHHHHHH
Confidence 489999999999999999999875 45999999998753 12456689999996 4555 699999988654
Q ss_pred ccCCCCCCHHHHHHHHHHHHHHcCCcc-cccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHH
Q 048028 72 FRLPRSVTKTKKQERVEALINQLGLRS-AAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMV 150 (592)
Q Consensus 72 l~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i 150 (592)
.. ..+.++.+++++++++.+||.+ ..++. ++.||||||||++||++|+.+|++|||||||+|||+.++..+
T Consensus 113 ~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l 184 (280)
T PRK13649 113 NF---GVSQEEAEALAREKLALVGISESLFEKN-----PFELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKEL 184 (280)
T ss_pred Hc---CCCHHHHHHHHHHHHHHcCCChhhhhCC-----cccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHH
Confidence 32 2234455667889999999973 45544 456999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCEEEEEecCChhHHHhhhceEEEecCCeEeeecChhhH
Q 048028 151 VNVLQRIAKSGSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNETPSNL 199 (592)
Q Consensus 151 ~~~l~~la~~g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~~~~ 199 (592)
.+.|++++++|+|||+++|+++ ++.+++|++++|++|+++..|+++++
T Consensus 185 ~~~l~~~~~~~~tiiivsH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~ 232 (280)
T PRK13649 185 MTLFKKLHQSGMTIVLVTHLMD-DVANYADFVYVLEKGKLVLSGKPKDI 232 (280)
T ss_pred HHHHHHHHHCCCEEEEEeccHH-HHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999877899999999997 68889999999999999999998876
No 117
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=1e-37 Score=313.77 Aligned_cols=190 Identities=26% Similarity=0.433 Sum_probs=161.0
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCcc----cccceeEEEccCCCCCCCCCHHHHHHHHHHccCC-
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLESK----LLKIISAYVMQDDLLFPMLTVEETLMFAAEFRLP- 75 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~~----~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~~- 75 (592)
++|+|||||||||||++|+|..++. +|+|.++|+++... ..++.++|++|++.+++.+||+||+.+.......
T Consensus 31 ~~l~G~nGsGKSTLl~~l~G~~~p~--~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~ 108 (242)
T TIGR03411 31 RVIIGPNGAGKTTMMDVITGKTRPD--EGSVLFGGTDLTGLPEHQIARAGIGRKFQKPTVFENLTVFENLELALPRDKSV 108 (242)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCCC--CCeEEECCeecCCCCHHHHHhcCeeEeccccccCCCCCHHHHHHHhhhccccc
Confidence 4899999999999999999998754 59999999987532 1234689999999999999999999886432100
Q ss_pred ----CCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHH
Q 048028 76 ----RSVTKTKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVV 151 (592)
Q Consensus 76 ----~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~ 151 (592)
.....++.+++++++++.+|+++..++.+ +.|||||||||+||++|+.+|++|+|||||+|||+.++..+.
T Consensus 109 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~Ge~qrv~laral~~~p~~lllDEPt~~LD~~~~~~l~ 183 (242)
T TIGR03411 109 FASLFFRLSAEEKDRIEEVLETIGLADEADRLA-----GLLSHGQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTA 183 (242)
T ss_pred ccccccccHHHHHHHHHHHHHHcCCchhhcCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHH
Confidence 00122344567899999999988776655 459999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCEEEEEecCChhHHHhhhceEEEecCCeEeeecChhhH
Q 048028 152 NVLQRIAKSGSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNETPSNL 199 (592)
Q Consensus 152 ~~l~~la~~g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~~~~ 199 (592)
+.|+++++ ++|||+++|+++ ++.++||++++|++|+++..|+++++
T Consensus 184 ~~l~~~~~-~~tii~~sH~~~-~~~~~~d~i~~l~~g~~~~~~~~~~~ 229 (242)
T TIGR03411 184 ELLKSLAG-KHSVVVVEHDME-FVRSIADKVTVLHQGSVLAEGSLDQV 229 (242)
T ss_pred HHHHHHhc-CCEEEEEECCHH-HHHHhCCEEEEEECCeEEeeCCHHHH
Confidence 99999976 789999999987 68889999999999999999988765
No 118
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1.8e-38 Score=315.04 Aligned_cols=188 Identities=28% Similarity=0.446 Sum_probs=172.2
Q ss_pred EEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCc---c----cccceeEEEccCCCCCCCCCHHHHHHHHHHccC
Q 048028 2 AILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLES---K----LLKIISAYVMQDDLLFPMLTVEETLMFAAEFRL 74 (592)
Q Consensus 2 aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~---~----~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~ 74 (592)
.|||-||||||||+++|.++.+|+ +|+|+++|+++.. + ..++.+++|+|+..|+|+.||.||..|+.+++
T Consensus 58 ViMGLSGSGKSTLvR~~NrLiept--~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrtVl~Nv~fGLev~- 134 (386)
T COG4175 58 VIMGLSGSGKSTLVRLLNRLIEPT--RGEILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQ- 134 (386)
T ss_pred EEEecCCCCHHHHHHHHhccCCCC--CceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchhHhhhhhcceeec-
Confidence 699999999999999999998864 5999999998753 1 23456899999999999999999999998876
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHH
Q 048028 75 PRSVTKTKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVNVL 154 (592)
Q Consensus 75 ~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l 154 (592)
..+++++++++.++|+..||+...+.+ +++|||||||||.|||||+.+|+|||+|||+|+|||--+.++.+.|
T Consensus 135 --Gv~~~er~~~a~~~l~~VgL~~~~~~y-----p~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQdeL 207 (386)
T COG4175 135 --GVPKAEREERALEALELVGLEGYADKY-----PNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDEL 207 (386)
T ss_pred --CCCHHHHHHHHHHHHHHcCchhhhhcC-----cccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHHH
Confidence 578999999999999999999998765 4579999999999999999999999999999999999999999999
Q ss_pred HHHHHc-CCEEEEEecCChhHHHhhhceEEEecCCeEeeecChhhHH
Q 048028 155 QRIAKS-GSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNETPSNLA 200 (592)
Q Consensus 155 ~~la~~-g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~~~~~ 200 (592)
.+|.++ ++|||++|||.+ |++++.|||.+|++|+++..|+|+|+.
T Consensus 208 l~Lq~~l~KTIvFitHDLd-EAlriG~rIaimkdG~ivQ~Gtp~eIl 253 (386)
T COG4175 208 LELQAKLKKTIVFITHDLD-EALRIGDRIAIMKDGEIVQVGTPEEIL 253 (386)
T ss_pred HHHHHHhCCeEEEEecCHH-HHHhccceEEEecCCeEEEeCCHHHHH
Confidence 999765 899999999997 799999999999999999999999984
No 119
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.1e-37 Score=315.98 Aligned_cols=184 Identities=30% Similarity=0.521 Sum_probs=158.7
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCcccccceeEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCH
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLESKLLKIISAYVMQDDLLFPMLTVEETLMFAAEFRLPRSVTK 80 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~ 80 (592)
++|+|||||||||||++|+|+.++. +|+|.++|+++.. .++.++|++|++.+++.+||+||+.+....+ ....
T Consensus 30 ~~i~G~nGsGKSTLl~~l~Gl~~p~--~G~i~~~g~~~~~--~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~ 102 (255)
T PRK11248 30 LVVLGPSGCGKTTLLNLIAGFVPYQ--HGSITLDGKPVEG--PGAERGVVFQNEGLLPWRNVQDNVAFGLQLA---GVEK 102 (255)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCCC--CcEEEECCEECCC--CCCcEEEEeCCCccCCCCcHHHHHHhHHHHc---CCCH
Confidence 5899999999999999999998754 5999999998753 2345799999999999999999998865432 2334
Q ss_pred HHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH-
Q 048028 81 TKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVNVLQRIAK- 159 (592)
Q Consensus 81 ~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~la~- 159 (592)
.+.+++++++++.+||.+..++.+ ..|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++
T Consensus 103 ~~~~~~~~~~l~~~gl~~~~~~~~-----~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~ 177 (255)
T PRK11248 103 MQRLEIAHQMLKKVGLEGAEKRYI-----WQLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQE 177 (255)
T ss_pred HHHHHHHHHHHHHcCChhHhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHh
Confidence 455678899999999987766554 46999999999999999999999999999999999999999999999965
Q ss_pred cCCEEEEEecCChhHHHhhhceEEEec--CCeEeeecChh
Q 048028 160 SGSIVIMSIHQPSYRILSLLDRLIILS--HGQSVYNETPS 197 (592)
Q Consensus 160 ~g~tvi~~~H~~~~~i~~~~D~v~ll~--~G~~v~~g~~~ 197 (592)
+|+|||+++|+++ ++.++||++++|+ +|+++..++.+
T Consensus 178 ~g~tviivsH~~~-~~~~~~d~i~~l~~~~G~i~~~~~~~ 216 (255)
T PRK11248 178 TGKQVLLITHDIE-EAVFMATELVLLSPGPGRVVERLPLN 216 (255)
T ss_pred cCCEEEEEeCCHH-HHHHhCCEEEEEeCCCcEEEEEecCC
Confidence 5899999999997 6889999999998 59999887653
No 120
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1e-37 Score=316.82 Aligned_cols=192 Identities=20% Similarity=0.355 Sum_probs=159.5
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCC---CceeEEEECCEecCc-----ccccceeEEEccCCCCCCCCCHHHHHHHHHHc
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKE---SLQGAVTLNGEVLES-----KLLKIISAYVMQDDLLFPMLTVEETLMFAAEF 72 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~---~~~G~I~i~g~~~~~-----~~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l 72 (592)
++|+||||||||||+++|+|+.++. +.+|+|.++|+++.. ...++.++|++|++.+++ +||+||+.+....
T Consensus 41 ~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~ 119 (258)
T PRK14268 41 TALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDVVELRKNVGMVFQKPNPFP-MSIYDNVAYGPRI 119 (258)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchHHHHhhhEEEEecCCccCc-ccHHHHHHHHHHH
Confidence 5899999999999999999998642 357999999998742 124567899999998888 8999999987543
Q ss_pred cCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHH
Q 048028 73 RLPRSVTKTKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVN 152 (592)
Q Consensus 73 ~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~ 152 (592)
+ ..+.++.+++++++++.+++.+...... +..++.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+
T Consensus 120 ~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~ 195 (258)
T PRK14268 120 H---GANKKDLDGVVENALRSAALWDETSDRL-KSPALSLSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIED 195 (258)
T ss_pred c---CCCHHHHHHHHHHHHHHcCCCcchhhhh-cCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHH
Confidence 2 2334445567899999999843211111 23455799999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCEEEEEecCChhHHHhhhceEEEecCCeEeeecChhhH
Q 048028 153 VLQRIAKSGSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNETPSNL 199 (592)
Q Consensus 153 ~l~~la~~g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~~~~ 199 (592)
.|+++++ ++|||+++|+++ ++.++|||+++|++|++++.|+++++
T Consensus 196 ~l~~l~~-~~tiiivsH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~ 240 (258)
T PRK14268 196 LIMNLKK-DYTIVIVTHNMQ-QAARISDYTGFFLMGELIEFGQTRQI 240 (258)
T ss_pred HHHHHhh-CCEEEEEECCHH-HHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999965 799999999987 57889999999999999999998765
No 121
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=8.6e-38 Score=290.81 Aligned_cols=189 Identities=31% Similarity=0.523 Sum_probs=168.0
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCcccccceeEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCH
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLESKLLKIISAYVMQDDLLFPMLTVEETLMFAAEFRLPRSVTK 80 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~ 80 (592)
++++||||||||||||+++|..+|. .|+|.+||++++..... .|.|+|++.++|-+||.||+.|+.+++ .+++
T Consensus 34 vv~lGpSGcGKTTLLnl~AGf~~P~--~G~i~l~~r~i~gPgae--rgvVFQ~~~LlPWl~~~dNvafgL~l~---Gi~k 106 (259)
T COG4525 34 VVVLGPSGCGKTTLLNLIAGFVTPS--RGSIQLNGRRIEGPGAE--RGVVFQNEALLPWLNVIDNVAFGLQLR---GIEK 106 (259)
T ss_pred EEEEcCCCccHHHHHHHHhcCcCcc--cceEEECCEeccCCCcc--ceeEeccCccchhhHHHHHHHHHHHhc---CCCH
Confidence 4789999999999999999998865 49999999999754333 389999999999999999999999887 5788
Q ss_pred HHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH-
Q 048028 81 TKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVNVLQRIAK- 159 (592)
Q Consensus 81 ~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~la~- 159 (592)
.++.+++.+++..+||++..++.+- +|||||||||.|||||..+|++|+||||++.||.-+++++.++|-++.+
T Consensus 107 ~~R~~~a~q~l~~VgL~~~~~~~i~-----qLSGGmrQRvGiARALa~eP~~LlLDEPfgAlDa~tRe~mQelLldlw~~ 181 (259)
T COG4525 107 AQRREIAHQMLALVGLEGAEHKYIW-----QLSGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQELLLDLWQE 181 (259)
T ss_pred HHHHHHHHHHHHHhCcccccccceE-----eecchHHHHHHHHHHhhcCcceEeecCchhhHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999988766654 6999999999999999999999999999999999999999999999876
Q ss_pred cCCEEEEEecCChhHHHhhhceEEEecC--CeEeeecChhhHHHH
Q 048028 160 SGSIVIMSIHQPSYRILSLLDRLIILSH--GQSVYNETPSNLAQF 202 (592)
Q Consensus 160 ~g~tvi~~~H~~~~~i~~~~D~v~ll~~--G~~v~~g~~~~~~~~ 202 (592)
.|+.++++||+.+ |..-+++|+++|+. ||++..=+++-..+|
T Consensus 182 tgk~~lliTH~ie-EAlflatrLvvlsp~pgRvv~~~~~df~rR~ 225 (259)
T COG4525 182 TGKQVLLITHDIE-EALFLATRLVVLSPGPGRVVERLPLDFARRY 225 (259)
T ss_pred hCCeEEEEeccHH-HHHhhhheeEEecCCCceeeEecCCCHHHHh
Confidence 5999999999998 67779999999985 799987777633333
No 122
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=100.00 E-value=4.8e-38 Score=310.05 Aligned_cols=183 Identities=26% Similarity=0.445 Sum_probs=151.7
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCcccccceeEEEccCCCCC--CCCCHHHHHHHHHHccCC-CC
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLESKLLKIISAYVMQDDLLF--PMLTVEETLMFAAEFRLP-RS 77 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~~~~~~~~~yv~Q~~~l~--~~lTV~E~l~f~~~l~~~-~~ 77 (592)
++|+||||||||||+++|+|+.+|. +|+|.++|+++. ..++.++|++|++.+. ..+||+||+.+....+.. ..
T Consensus 28 ~~l~G~nGsGKSTLl~~l~G~~~p~--~G~i~~~g~~~~--~~~~~i~~v~q~~~~~~~~~~tv~e~l~~~~~~~~~~~~ 103 (213)
T cd03235 28 LAIVGPNGAGKSTLLKAILGLLKPT--SGSIRVFGKPLE--KERKRIGYVPQRRSIDRDFPISVRDVVLMGLYGHKGLFR 103 (213)
T ss_pred EEEECCCCCCHHHHHHHHcCCCCCC--CCEEEECCccHH--HHHhheEEeccccccccCCCCcHHHHHHhcccccccccc
Confidence 5899999999999999999998754 599999998764 3456789999998763 347999999876432110 00
Q ss_pred CCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 048028 78 VTKTKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVNVLQRI 157 (592)
Q Consensus 78 ~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~l 157 (592)
...++.+++++++++.+|+++..++.+ ..||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++
T Consensus 104 ~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~ 178 (213)
T cd03235 104 RLSKADKAKVDEALERVGLSELADRQI-----GELSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLREL 178 (213)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHhCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence 122334567899999999987776655 469999999999999999999999999999999999999999999999
Q ss_pred HHcCCEEEEEecCChhHHHhhhceEEEecCCeEeeec
Q 048028 158 AKSGSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNE 194 (592)
Q Consensus 158 a~~g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g 194 (592)
+++|+|||+++|+++ ++.+++|++++|++| +++.|
T Consensus 179 ~~~~~tvi~~sH~~~-~~~~~~d~i~~l~~~-~~~~g 213 (213)
T cd03235 179 RREGMTILVVTHDLG-LVLEYFDRVLLLNRT-VVASG 213 (213)
T ss_pred HhcCCEEEEEeCCHH-HHHHhcCEEEEEcCc-EeecC
Confidence 878899999999997 688899999999876 55544
No 123
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.4e-37 Score=318.11 Aligned_cols=188 Identities=27% Similarity=0.442 Sum_probs=160.1
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCc-----ccccceeEEEccCCCC-CCCCCHHHHHHHHHHccC
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLES-----KLLKIISAYVMQDDLL-FPMLTVEETLMFAAEFRL 74 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~-----~~~~~~~~yv~Q~~~l-~~~lTV~E~l~f~~~l~~ 74 (592)
++|+||||||||||||+|+|++++. +|+|.++|+++.. ...++.++|++|++.+ +...|+.||+.+....+
T Consensus 30 ~~i~G~nGsGKSTLl~~l~Gl~~p~--~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~l~~~~~~~- 106 (271)
T PRK13638 30 TGLVGANGCGKSTLFMNLSGLLRPQ--KGAVLWQGKPLDYSKRGLLALRQQVATVFQDPEQQIFYTDIDSDIAFSLRNL- 106 (271)
T ss_pred EEEECCCCCCHHHHHHHHcCCCCCC--ccEEEECCEEcccccCCHHHHHhheEEEeeChhhccccccHHHHHHHHHHHc-
Confidence 4899999999999999999998754 5999999998741 1235678999999752 34568999998865432
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHH
Q 048028 75 PRSVTKTKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVNVL 154 (592)
Q Consensus 75 ~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l 154 (592)
.....+..++++++++.+|+.+..++.+ +.||||||||++||++|+.+|++|||||||+|||+.++..+.+.|
T Consensus 107 --~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l 179 (271)
T PRK13638 107 --GVPEAEITRRVDEALTLVDAQHFRHQPI-----QCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAII 179 (271)
T ss_pred --CCCHHHHHHHHHHHHHHcCCHhHhcCCc-----hhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence 2234445567889999999987776654 469999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCEEEEEecCChhHHHhhhceEEEecCCeEeeecChhhH
Q 048028 155 QRIAKSGSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNETPSNL 199 (592)
Q Consensus 155 ~~la~~g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~~~~ 199 (592)
++++++|+|||+++|++. ++.+++|++++|++|++++.|+++++
T Consensus 180 ~~~~~~g~tii~vtH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~ 223 (271)
T PRK13638 180 RRIVAQGNHVIISSHDID-LIYEISDAVYVLRQGQILTHGAPGEV 223 (271)
T ss_pred HHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 999877899999999997 58889999999999999999998776
No 124
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=100.00 E-value=1.2e-37 Score=313.13 Aligned_cols=195 Identities=24% Similarity=0.270 Sum_probs=159.6
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCcc---c-ccceeEEEccCCCCCCCCCHHHHHHHHHHccCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLESK---L-LKIISAYVMQDDLLFPMLTVEETLMFAAEFRLPR 76 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~~---~-~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~~~ 76 (592)
++|+||||||||||+|+|+|+.+..+.+|+|.++|+++... . .+..++|++|++.+++.+|++|++.+........
T Consensus 29 ~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~t~~~~~~~~~~~~~~~ 108 (243)
T TIGR01978 29 HAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARAGLFLAFQYPEEIPGVSNLEFLRSALNARRSA 108 (243)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhccceEeeeccccccCCcCHHHHHHHHHHHhhcc
Confidence 58999999999999999999952123569999999987532 1 2334799999999999999999998865432110
Q ss_pred ----CCCHHHHHHHHHHHHHHcCCc-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHH
Q 048028 77 ----SVTKTKKQERVEALINQLGLR-SAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVV 151 (592)
Q Consensus 77 ----~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~ 151 (592)
..+..+..++++++++.+||. +..++.++ ..|||||||||+||++|+.+|++|+|||||+|||+.++..+.
T Consensus 109 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~----~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~ 184 (243)
T TIGR01978 109 RGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVN----EGFSGGEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVA 184 (243)
T ss_pred cccccccHHHHHHHHHHHHHHcCCchhhcccccc----cCcCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHH
Confidence 112233456789999999997 34554432 249999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCEEEEEecCChhHHHhh-hceEEEecCCeEeeecChhhHH
Q 048028 152 NVLQRIAKSGSIVIMSIHQPSYRILSL-LDRLIILSHGQSVYNETPSNLA 200 (592)
Q Consensus 152 ~~l~~la~~g~tvi~~~H~~~~~i~~~-~D~v~ll~~G~~v~~g~~~~~~ 200 (592)
+.|++++++|+|||+++|+++ .+... +|++++|++|++++.|+++++.
T Consensus 185 ~~l~~~~~~~~tvi~vsH~~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 233 (243)
T TIGR01978 185 EGINRLREPDRSFLIITHYQR-LLNYIKPDYVHVLLDGRIVKSGDVELAK 233 (243)
T ss_pred HHHHHHHHCCcEEEEEEecHH-HHHhhcCCeEEEEeCCEEEEecCHHHhc
Confidence 999999888899999999997 57777 8999999999999999987654
No 125
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=100.00 E-value=1.3e-37 Score=307.15 Aligned_cols=184 Identities=26% Similarity=0.417 Sum_probs=157.6
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCc-ccccceeEEEccCCCCCCCCCHHHHHHHHHHccCCCCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLES-KLLKIISAYVMQDDLLFPMLTVEETLMFAAEFRLPRSVT 79 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~-~~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~ 79 (592)
++|+||||||||||+++|+|..++. +|+|.++|+++.. ...++.++|++|++.+++.+|+.||+.+...... ..
T Consensus 27 ~~i~G~nGsGKSTLl~~l~G~~~~~--~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~t~~en~~~~~~~~~---~~ 101 (213)
T TIGR01277 27 VAIMGPSGAGKSTLLNLIAGFIEPA--SGSIKVNDQSHTGLAPYQRPVSMLFQENNLFAHLTVRQNIGLGLHPGL---KL 101 (213)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCCC--CcEEEECCEEcccCChhccceEEEeccCccCCCCcHHHHHHhHhhccC---Cc
Confidence 4899999999999999999998754 5999999998753 2345678999999999999999999987543211 11
Q ss_pred HHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Q 048028 80 KTKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVNVLQRIAK 159 (592)
Q Consensus 80 ~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~la~ 159 (592)
+.+.+++++++++.+||++..++.+ +.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++
T Consensus 102 ~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~ 176 (213)
T TIGR01277 102 NAEQQEKVVDAAQQVGIADYLDRLP-----EQLSGGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCS 176 (213)
T ss_pred cHHHHHHHHHHHHHcCcHHHhhCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHH
Confidence 2233567889999999987776554 46999999999999999999999999999999999999999999999987
Q ss_pred c-CCEEEEEecCChhHHHhhhceEEEecCCeEeeecC
Q 048028 160 S-GSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNET 195 (592)
Q Consensus 160 ~-g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~ 195 (592)
+ |+|||+++|+++ ++.+++|++++|++|+++..|+
T Consensus 177 ~~~~tii~vsh~~~-~~~~~~d~v~~l~~g~i~~~~~ 212 (213)
T TIGR01277 177 ERQRTLLMVTHHLS-DARAIASQIAVVSQGKIKVVSD 212 (213)
T ss_pred hcCCEEEEEeCCHH-HHHhhcCeEEEEECCeEEEecC
Confidence 5 899999999987 5788999999999999998875
No 126
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.4e-38 Score=320.01 Aligned_cols=187 Identities=26% Similarity=0.420 Sum_probs=161.5
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCc----ccccceeEEEccCCC-CCCCCCHHHHHHHHHHccCC
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLES----KLLKIISAYVMQDDL-LFPMLTVEETLMFAAEFRLP 75 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~----~~~~~~~~yv~Q~~~-l~~~lTV~E~l~f~~~l~~~ 75 (592)
++|+|||||||||||++|+|+.++ .+|+|.++|.++.. ...++.++|++|++. .+..+||.||+.+.....
T Consensus 31 ~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~-- 106 (274)
T PRK13644 31 IGIIGKNGSGKSTLALHLNGLLRP--QKGKVLVSGIDTGDFSKLQGIRKLVGIVFQNPETQFVGRTVEEDLAFGPENL-- 106 (274)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCC--CCceEEECCEECCccccHHHHHhheEEEEEChhhhcccchHHHHHHhhHHHc--
Confidence 589999999999999999999875 45999999998753 234567899999975 466689999998875432
Q ss_pred CCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHH
Q 048028 76 RSVTKTKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVNVLQ 155 (592)
Q Consensus 76 ~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~ 155 (592)
..+..+.+++++++++.+||++..++.+ +.|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|+
T Consensus 107 -~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~ 180 (274)
T PRK13644 107 -CLPPIEIRKRVDRALAEIGLEKYRHRSP-----KTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIK 180 (274)
T ss_pred -CCCHHHHHHHHHHHHHHCCCHHHhcCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHH
Confidence 2345555677899999999988776655 4699999999999999999999999999999999999999999999
Q ss_pred HHHHcCCEEEEEecCChhHHHhhhceEEEecCCeEeeecChhhH
Q 048028 156 RIAKSGSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNETPSNL 199 (592)
Q Consensus 156 ~la~~g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~~~~ 199 (592)
+++++|.|||+++|+++ ++ ..+|++++|++|++++.|+++++
T Consensus 181 ~l~~~g~til~~tH~~~-~~-~~~d~v~~l~~G~i~~~g~~~~~ 222 (274)
T PRK13644 181 KLHEKGKTIVYITHNLE-EL-HDADRIIVMDRGKIVLEGEPENV 222 (274)
T ss_pred HHHhCCCEEEEEecCHH-HH-hhCCEEEEEECCEEEEECCHHHH
Confidence 99878999999999997 46 56999999999999999998876
No 127
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.4e-37 Score=314.82 Aligned_cols=195 Identities=24% Similarity=0.391 Sum_probs=161.5
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCC---CceeEEEECCEecCc-----ccccceeEEEccCCCCCCCCCHHHHHHHHHHc
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKE---SLQGAVTLNGEVLES-----KLLKIISAYVMQDDLLFPMLTVEETLMFAAEF 72 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~---~~~G~I~i~g~~~~~-----~~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l 72 (592)
++|+||||||||||+++|+|++++. +.+|+|.++|+++.. ...++.++|++|++.+++.+||.||+.+....
T Consensus 33 ~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~ 112 (253)
T PRK14267 33 FALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPIEVRREVGMVFQYPNPFPHLTIYDNVAIGVKL 112 (253)
T ss_pred EEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccChHHHhhceeEEecCCccCCCCcHHHHHHHHHHh
Confidence 4899999999999999999998763 247999999998741 23456789999999999999999999887543
Q ss_pred cCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHH
Q 048028 73 RLPRSVTKTKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVN 152 (592)
Q Consensus 73 ~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~ 152 (592)
+. ...+.++..++++++++.+|+.+...... +..++.||||||||++||++|+.+|++++|||||+|||+.++..+.+
T Consensus 113 ~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~ 190 (253)
T PRK14267 113 NG-LVKSKKELDERVEWALKKAALWDEVKDRL-NDYPSNLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEE 190 (253)
T ss_pred cC-ccCCHHHHHHHHHHHHHHcCCccchhhhh-ccChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHH
Confidence 21 11133444567889999999853211111 33456799999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCEEEEEecCChhHHHhhhceEEEecCCeEeeecChhhH
Q 048028 153 VLQRIAKSGSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNETPSNL 199 (592)
Q Consensus 153 ~l~~la~~g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~~~~ 199 (592)
.|+++++ ++|||+++|+++ ++.++||++++|++|+++..|+++++
T Consensus 191 ~l~~~~~-~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~ 235 (253)
T PRK14267 191 LLFELKK-EYTIVLVTHSPA-QAARVSDYVAFLYLGKLIEVGPTRKV 235 (253)
T ss_pred HHHHHhh-CCEEEEEECCHH-HHHhhCCEEEEEECCEEEEeCCHHHH
Confidence 9999975 689999999997 58889999999999999999998776
No 128
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=100.00 E-value=1.3e-37 Score=314.86 Aligned_cols=189 Identities=26% Similarity=0.412 Sum_probs=162.2
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCc----------------ccccceeEEEccCCCCCCCCCHHH
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLES----------------KLLKIISAYVMQDDLLFPMLTVEE 64 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~----------------~~~~~~~~yv~Q~~~l~~~lTV~E 64 (592)
++|+||||||||||+|+|+|+.++ .+|+|.++|+++.. ...++.++|++|++.+++.+||.|
T Consensus 29 ~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~ 106 (252)
T TIGR03005 29 VALIGPSGSGKSTILRILMTLEPI--DEGQIQVEGEQLYHMPGRNGPLVPADEKHLRQMRNKIGMVFQSFNLFPHKTVLD 106 (252)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEEccccccccccccccchhHHHHHhhCeEEEecCcccCCCCcHHH
Confidence 489999999999999999999875 46999999988742 123567899999999999999999
Q ss_pred HHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCH
Q 048028 65 TLMFAAEFRLPRSVTKTKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDS 144 (592)
Q Consensus 65 ~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~ 144 (592)
|+.++.... ......+.+++++++++.+|+.+..++. ++.||||||||++||++|+.+|++++|||||+|||+
T Consensus 107 nl~~~~~~~--~~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~ 179 (252)
T TIGR03005 107 NVTEAPVLV--LGMARAEAEKRAMELLDMVGLADKADHM-----PAQLSGGQQQRVAIARALAMRPKVMLFDEVTSALDP 179 (252)
T ss_pred HHHHHHHHh--cCCCHHHHHHHHHHHHHHcCChhHhhcC-----hhhcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCH
Confidence 998754311 1223445566789999999998776554 456999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHc-CCEEEEEecCChhHHHhhhceEEEecCCeEeeecChhhH
Q 048028 145 TSAFMVVNVLQRIAKS-GSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNETPSNL 199 (592)
Q Consensus 145 ~~~~~i~~~l~~la~~-g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~~~~ 199 (592)
.++..+.+.|++++++ |.|+|+++|++. ++.+++||+++|++|++++.|+.+++
T Consensus 180 ~~~~~l~~~l~~~~~~~~~tiiivsH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~ 234 (252)
T TIGR03005 180 ELVGEVLNVIRRLASEHDLTMLLVTHEMG-FAREFADRVCFFDKGRIVEQGKPDEI 234 (252)
T ss_pred HHHHHHHHHHHHHHHhcCcEEEEEeCCHH-HHHHhcCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999875 899999999997 58889999999999999999988765
No 129
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=1.2e-37 Score=316.14 Aligned_cols=188 Identities=32% Similarity=0.460 Sum_probs=160.7
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCc---ccccceeEEEccCCCCCCCCCHHHHHHHHHHccCCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLES---KLLKIISAYVMQDDLLFPMLTVEETLMFAAEFRLPRS 77 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~---~~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~~~~ 77 (592)
++|+|||||||||||++|+|+.++ .+|+|.++|.++.. ...++.++|++|++.+++.+||+||+.+..... .
T Consensus 31 ~~i~G~nGsGKSTLl~~i~G~~~p--~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~ 105 (258)
T PRK13548 31 VAILGPNGAGKSTLLRALSGELSP--DSGEVRLNGRPLADWSPAELARRRAVLPQHSSLSFPFTVEEVVAMGRAPH---G 105 (258)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCC--CCCEEEECCEEcccCCHHHhhhheEEEccCCcCCCCCCHHHHHHhhhccc---C
Confidence 489999999999999999999875 45999999998643 223456899999998888899999998864321 1
Q ss_pred CCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHh------hCCcEEEEeCCCCCCCHHHHHHHH
Q 048028 78 VTKTKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHII------HDPILLFLDEPTSGLDSTSAFMVV 151 (592)
Q Consensus 78 ~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~------~~p~lllLDEPtsgLD~~~~~~i~ 151 (592)
...++.+++++++++.+||.+..++.+ +.|||||||||+||++|+ .+|++|+|||||+|||+.++..+.
T Consensus 106 ~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgGe~qrv~la~al~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~ 180 (258)
T PRK13548 106 LSRAEDDALVAAALAQVDLAHLAGRDY-----PQLSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVL 180 (258)
T ss_pred CCcHHHHHHHHHHHHHcCCHhHhcCCc-----ccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCCcccCCHHHHHHHH
Confidence 122334567889999999987776655 469999999999999999 599999999999999999999999
Q ss_pred HHHHHHH-HcCCEEEEEecCChhHHHhhhceEEEecCCeEeeecChhhH
Q 048028 152 NVLQRIA-KSGSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNETPSNL 199 (592)
Q Consensus 152 ~~l~~la-~~g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~~~~ 199 (592)
+.|++++ ++|+|||+++|+++ ++.++||++++|++|+++..|+++++
T Consensus 181 ~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~ 228 (258)
T PRK13548 181 RLARQLAHERGLAVIVVLHDLN-LAARYADRIVLLHQGRLVADGTPAEV 228 (258)
T ss_pred HHHHHHHHhcCCEEEEEECCHH-HHHHhcCEEEEEECCEEEeeCCHHHH
Confidence 9999998 56899999999997 58889999999999999999988765
No 130
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.4e-37 Score=319.01 Aligned_cols=189 Identities=28% Similarity=0.456 Sum_probs=162.5
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCc---ccccceeEEEccCCC-CCCCCCHHHHHHHHHHccCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLES---KLLKIISAYVMQDDL-LFPMLTVEETLMFAAEFRLPR 76 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~---~~~~~~~~yv~Q~~~-l~~~lTV~E~l~f~~~l~~~~ 76 (592)
++|+||||||||||+|+|+|+.++ .+|+|.++|+++.. ...++.++|++|++. .+...||.||+.+.....
T Consensus 33 ~~i~G~NGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~--- 107 (277)
T PRK13652 33 IAVIGPNGAGKSTLFRHFNGILKP--TSGSVLIRGEPITKENIREVRKFVGLVFQNPDDQIFSPTVEQDIAFGPINL--- 107 (277)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCC--CceEEEECCEECCcCCHHHHHhheEEEecCcccccccccHHHHHHhHHHHc---
Confidence 489999999999999999999875 46999999998753 234567899999973 334579999998765432
Q ss_pred CCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHH
Q 048028 77 SVTKTKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVNVLQR 156 (592)
Q Consensus 77 ~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~ 156 (592)
..+.++.+++++++++.+||.+..++.+ +.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++
T Consensus 108 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~Gq~qrl~laraL~~~p~llilDEPt~gLD~~~~~~l~~~l~~ 182 (277)
T PRK13652 108 GLDEETVAHRVSSALHMLGLEELRDRVP-----HHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLND 182 (277)
T ss_pred CCCHHHHHHHHHHHHHHCCChhHhcCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 2344555677899999999988776655 46999999999999999999999999999999999999999999999
Q ss_pred HHHc-CCEEEEEecCChhHHHhhhceEEEecCCeEeeecChhhHH
Q 048028 157 IAKS-GSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNETPSNLA 200 (592)
Q Consensus 157 la~~-g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~~~~~ 200 (592)
++++ |+|||+++|+++ ++.+.|||+++|++|++++.|+++++.
T Consensus 183 l~~~~g~tvli~tH~~~-~~~~~~drv~~l~~G~i~~~g~~~~~~ 226 (277)
T PRK13652 183 LPETYGMTVIFSTHQLD-LVPEMADYIYVMDKGRIVAYGTVEEIF 226 (277)
T ss_pred HHHhcCCEEEEEecCHH-HHHHhCCEEEEEECCeEEEECCHHHHh
Confidence 9875 899999999997 688999999999999999999998874
No 131
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.8e-37 Score=324.56 Aligned_cols=195 Identities=27% Similarity=0.385 Sum_probs=163.6
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCC--CceeEEEECCEecCcc---c----ccceeEEEccCC--CCCCCCCHHHHHHHH
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKE--SLQGAVTLNGEVLESK---L----LKIISAYVMQDD--LLFPMLTVEETLMFA 69 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~--~~~G~I~i~g~~~~~~---~----~~~~~~yv~Q~~--~l~~~lTV~E~l~f~ 69 (592)
+||+|+||||||||+++|+|++++. ..+|+|.++|+++... . .++.++||+|++ .+.|.+||.+++...
T Consensus 36 ~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~ 115 (326)
T PRK11022 36 VGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKERRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEA 115 (326)
T ss_pred EEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecCchhhcCCcCCHHHHHHHH
Confidence 5899999999999999999998642 3579999999987531 1 123689999997 589999999998766
Q ss_pred HHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHH
Q 048028 70 AEFRLPRSVTKTKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFM 149 (592)
Q Consensus 70 ~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~ 149 (592)
..... ...+++.++++.++++.+||.+..+. -+.++++|||||||||+||+||+.+|++|++||||+|||+.++.+
T Consensus 116 l~~~~--~~~~~~~~~~~~~~L~~~gL~~~~~~--l~~~p~~LSgGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~ 191 (326)
T PRK11022 116 IKVHQ--GGNKKTRRQRAIDLLNQVGIPDPASR--LDVYPHQLSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQ 191 (326)
T ss_pred HHHhc--CCCHHHHHHHHHHHHHHCCCCChHHH--HhCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHH
Confidence 54321 23455667889999999999753211 134567899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHH-cCCEEEEEecCChhHHHhhhceEEEecCCeEeeecChhhHH
Q 048028 150 VVNVLQRIAK-SGSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNETPSNLA 200 (592)
Q Consensus 150 i~~~l~~la~-~g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~~~~~ 200 (592)
++++|+++++ .|.|+|++|||++ .+.+++|||++|++|+++..|+++++.
T Consensus 192 il~lL~~l~~~~g~til~iTHdl~-~~~~~adri~vm~~G~ive~g~~~~~~ 242 (326)
T PRK11022 192 IIELLLELQQKENMALVLITHDLA-LVAEAAHKIIVMYAGQVVETGKAHDIF 242 (326)
T ss_pred HHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEECCHHHHh
Confidence 9999999987 4899999999997 578899999999999999999998774
No 132
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=100.00 E-value=1.8e-37 Score=324.99 Aligned_cols=195 Identities=25% Similarity=0.420 Sum_probs=165.8
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCC-CceeEEEECCEecCcc---c---cc-ceeEEEccCC--CCCCCCCHHHHHHHHH
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKE-SLQGAVTLNGEVLESK---L---LK-IISAYVMQDD--LLFPMLTVEETLMFAA 70 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~-~~~G~I~i~g~~~~~~---~---~~-~~~~yv~Q~~--~l~~~lTV~E~l~f~~ 70 (592)
++|+|+||||||||+++|+|+.++. ..+|+|.++|+++... . .+ +.++||+|++ .+.|.+|+.+++....
T Consensus 45 ~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~ 124 (330)
T PRK09473 45 LGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVL 124 (330)
T ss_pred EEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHHHHHHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHH
Confidence 5899999999999999999998753 1379999999987531 1 22 4689999998 6899999999998765
Q ss_pred HccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHH
Q 048028 71 EFRLPRSVTKTKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMV 150 (592)
Q Consensus 71 ~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i 150 (592)
.... ..++.+..+++.++++.+||.+..+. + +.++++|||||||||+||+||+.+|++|++||||+|||+.++.++
T Consensus 125 ~~~~--~~~~~~~~~~~~~~L~~vgL~~~~~~-~-~~~p~~LSgG~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i 200 (330)
T PRK09473 125 MLHK--GMSKAEAFEESVRMLDAVKMPEARKR-M-KMYPHEFSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQI 200 (330)
T ss_pred HHhc--CCCHHHHHHHHHHHHHHcCCCChHHH-h-cCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHH
Confidence 4431 23455667789999999999753322 2 356788999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHc-CCEEEEEecCChhHHHhhhceEEEecCCeEeeecChhhHH
Q 048028 151 VNVLQRIAKS-GSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNETPSNLA 200 (592)
Q Consensus 151 ~~~l~~la~~-g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~~~~~ 200 (592)
+++|++++++ |.|+|++|||++ .+.+++||+++|++|++++.|+++++.
T Consensus 201 ~~lL~~l~~~~g~til~iTHdl~-~~~~~~Dri~vm~~G~ive~g~~~~i~ 250 (330)
T PRK09473 201 MTLLNELKREFNTAIIMITHDLG-VVAGICDKVLVMYAGRTMEYGNARDVF 250 (330)
T ss_pred HHHHHHHHHHcCCEEEEEECCHH-HHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 9999999875 899999999997 578899999999999999999998874
No 133
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=100.00 E-value=1.2e-37 Score=317.08 Aligned_cols=193 Identities=26% Similarity=0.463 Sum_probs=161.8
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCC-ceeEEEECCEecCc--------ccccceeEEEccCCCCCCCCCHHHHHHHHHH
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKES-LQGAVTLNGEVLES--------KLLKIISAYVMQDDLLFPMLTVEETLMFAAE 71 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~-~~G~I~i~g~~~~~--------~~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~ 71 (592)
++|+||||||||||+++|+|..++.. .+|+|.++|+++.. ...++.++|++|++.+++.+||+||+.+...
T Consensus 33 ~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~ 112 (262)
T PRK09984 33 VALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDIRKSRANTGYIFQQFNLVNRLSVLENVLIGAL 112 (262)
T ss_pred EEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchhHHHHHhheEEEccccccccCCcHHHHHHhhhc
Confidence 58999999999999999999987642 46999999988742 1234568999999999999999999987642
Q ss_pred ccCCC-----CCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHH
Q 048028 72 FRLPR-----SVTKTKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTS 146 (592)
Q Consensus 72 l~~~~-----~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~ 146 (592)
...+. ....++.+++++++++.+|+.+..|+.+ +.|||||||||+||++|+.+|++|+|||||+|||+.+
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~ 187 (262)
T PRK09984 113 GSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRV-----STLSGGQQQRVAIARALMQQAKVILADEPIASLDPES 187 (262)
T ss_pred ccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCCc-----cccCHHHHHHHHHHHHHhcCCCEEEecCccccCCHHH
Confidence 11000 1112344567899999999987776655 4599999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHc-CCEEEEEecCChhHHHhhhceEEEecCCeEeeecChhhH
Q 048028 147 AFMVVNVLQRIAKS-GSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNETPSNL 199 (592)
Q Consensus 147 ~~~i~~~l~~la~~-g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~~~~ 199 (592)
+..+.+.|++++++ |+|||+++|+++ ++.+++|++++|++|++++.|+++++
T Consensus 188 ~~~l~~~l~~~~~~~g~tvii~tH~~~-~~~~~~d~i~~l~~g~i~~~g~~~~~ 240 (262)
T PRK09984 188 ARIVMDTLRDINQNDGITVVVTLHQVD-YALRYCERIVALRQGHVFYDGSSQQF 240 (262)
T ss_pred HHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEeCCHHHh
Confidence 99999999999864 899999999997 58899999999999999999988754
No 134
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.7e-37 Score=314.47 Aligned_cols=189 Identities=23% Similarity=0.351 Sum_probs=158.9
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCC---CceeEEEECCEecCc-----ccccceeEEEccCCCCCCCCCHHHHHHHHHHc
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKE---SLQGAVTLNGEVLES-----KLLKIISAYVMQDDLLFPMLTVEETLMFAAEF 72 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~---~~~G~I~i~g~~~~~-----~~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l 72 (592)
++|+||||||||||+|+|+|+.++. +.+|+|.++|+++.. ...++.++|++|++.+++ +||+||+.+....
T Consensus 36 ~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~ 114 (254)
T PRK14273 36 TALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDILELRRKIGMVFQTPNPFL-MSIYDNISYGPKI 114 (254)
T ss_pred EEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccHHHHhhceEEEeecccccc-CcHHHHHHHHHHh
Confidence 5899999999999999999998753 247999999998642 234567899999988885 8999999987543
Q ss_pred cCCCCCCHHHHHHHHHHHHHHcCCc----ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHH
Q 048028 73 RLPRSVTKTKKQERVEALINQLGLR----SAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAF 148 (592)
Q Consensus 73 ~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~ 148 (592)
+. .....+.+++++++++.+++. +..++ .++.|||||||||+|||+|+.+|++|+|||||+|||+.++.
T Consensus 115 ~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~-----~~~~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~ 187 (254)
T PRK14273 115 HG--TKDKKKLDEIVEQSLKKSALWNEVKDKLNT-----NALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTG 187 (254)
T ss_pred cC--CCCHHHHHHHHHHHHHHhCCchhhHHHHhC-----CcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHH
Confidence 21 112334457788999999884 33343 45679999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCEEEEEecCChhHHHhhhceEEEecCCeEeeecChhhH
Q 048028 149 MVVNVLQRIAKSGSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNETPSNL 199 (592)
Q Consensus 149 ~i~~~l~~la~~g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~~~~ 199 (592)
.+.+.|+++++ +.|||+++|+++ ++.+++||+++|++|+++..|+++++
T Consensus 188 ~l~~~l~~~~~-~~tvii~sH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~ 236 (254)
T PRK14273 188 KIEELIINLKE-SYTIIIVTHNMQ-QAGRISDRTAFFLNGCIEEESSTDEL 236 (254)
T ss_pred HHHHHHHHHhc-CCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 99999999964 789999999997 58889999999999999999998876
No 135
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=100.00 E-value=1e-37 Score=309.85 Aligned_cols=182 Identities=27% Similarity=0.435 Sum_probs=158.7
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCcccccceeEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCH
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLESKLLKIISAYVMQDDLLFPMLTVEETLMFAAEFRLPRSVTK 80 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~ 80 (592)
++|+|||||||||||++|+|.+++ .+|+|.++|+++.... .+.++|++|++.+++.+|++||+.+....+. ..
T Consensus 29 ~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~~~~~~~~~-~~~~~~~~q~~~~~~~~t~~~~~~~~~~~~~---~~- 101 (223)
T TIGR03740 29 YGLLGPNGAGKSTLLKMITGILRP--TSGEIIFDGHPWTRKD-LHKIGSLIESPPLYENLTARENLKVHTTLLG---LP- 101 (223)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEeccccc-cccEEEEcCCCCccccCCHHHHHHHHHHHcC---CC-
Confidence 489999999999999999999875 4599999999875433 2468999999999999999999987664431 11
Q ss_pred HHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc
Q 048028 81 TKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVNVLQRIAKS 160 (592)
Q Consensus 81 ~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~la~~ 160 (592)
++++.++++.+|+++..|+.+ +.||||||||++||++++.+|++++|||||+|||+.++..+.+.|++++++
T Consensus 102 ---~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~~rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~ 173 (223)
T TIGR03740 102 ---DSRIDEVLNIVDLTNTGKKKA-----KQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPEQ 173 (223)
T ss_pred ---HHHHHHHHHHcCCcHHHhhhH-----hhCCHHHHHHHHHHHHHhcCCCEEEECCCccCCCHHHHHHHHHHHHHHHHC
Confidence 246788999999988776655 459999999999999999999999999999999999999999999999877
Q ss_pred CCEEEEEecCChhHHHhhhceEEEecCCeEeeecChhh
Q 048028 161 GSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNETPSN 198 (592)
Q Consensus 161 g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~~~ 198 (592)
|+|||+++|+++ ++.+.+||+++|++|++++.|++.+
T Consensus 174 ~~tiii~sH~~~-~~~~~~d~i~~l~~g~i~~~~~~~~ 210 (223)
T TIGR03740 174 GITVILSSHILS-EVQQLADHIGIISEGVLGYQGKINK 210 (223)
T ss_pred CCEEEEEcCCHH-HHHHhcCEEEEEeCCEEEEecChhh
Confidence 999999999997 5889999999999999999988753
No 136
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.4e-37 Score=316.00 Aligned_cols=187 Identities=23% Similarity=0.374 Sum_probs=160.5
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCc---ccccceeEEEccCCC-CCCCCCHHHHHHHHHHccCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLES---KLLKIISAYVMQDDL-LFPMLTVEETLMFAAEFRLPR 76 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~---~~~~~~~~yv~Q~~~-l~~~lTV~E~l~f~~~l~~~~ 76 (592)
++|+||||||||||+++|+|+.++. +|+|.++|+++.. ...++.++|++|++. +++..|+++|+.+.....
T Consensus 38 ~~I~G~nGsGKSTLl~~i~Gl~~~~--~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~v~~~~~~~~~~~--- 112 (269)
T PRK13648 38 TSIVGHNGSGKSTIAKLMIGIEKVK--SGEIFYNNQAITDDNFEKLRKHIGIVFQNPDNQFVGSIVKYDVAFGLENH--- 112 (269)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCCC--ceEEEECCEECCcCCHHHHHhheeEEEeChHHhcccccHHHHHHhhHHhc---
Confidence 4899999999999999999998754 5999999998753 234567899999974 677889999998875432
Q ss_pred CCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHH
Q 048028 77 SVTKTKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVNVLQR 156 (592)
Q Consensus 77 ~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~ 156 (592)
....++..++++++++.+|+.+..++.+ +.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++
T Consensus 113 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~ 187 (269)
T PRK13648 113 AVPYDEMHRRVSEALKQVDMLERADYEP-----NALSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRK 187 (269)
T ss_pred CCCHHHHHHHHHHHHHHcCCchhhhCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 2234445567889999999987776554 56999999999999999999999999999999999999999999999
Q ss_pred HHHc-CCEEEEEecCChhHHHhhhceEEEecCCeEeeecChhhH
Q 048028 157 IAKS-GSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNETPSNL 199 (592)
Q Consensus 157 la~~-g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~~~~ 199 (592)
++++ |+|||+++|+++ ++.. +||+++|++|++++.|+++++
T Consensus 188 ~~~~~~~tiiivtH~~~-~~~~-~d~i~~l~~G~i~~~g~~~~~ 229 (269)
T PRK13648 188 VKSEHNITIISITHDLS-EAME-ADHVIVMNKGTVYKEGTPTEI 229 (269)
T ss_pred HHHhcCCEEEEEecCch-HHhc-CCEEEEEECCEEEEecCHHHH
Confidence 9875 899999999997 4654 999999999999999998876
No 137
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=100.00 E-value=1.9e-37 Score=316.05 Aligned_cols=190 Identities=27% Similarity=0.441 Sum_probs=161.0
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCcc------cccceeEEEccCC--CCCCCCCHHHHHHHHHHc
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLESK------LLKIISAYVMQDD--LLFPMLTVEETLMFAAEF 72 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~~------~~~~~~~yv~Q~~--~l~~~lTV~E~l~f~~~l 72 (592)
++|+|||||||||||++|+|+.++ .+|+|.++|+++... ..++.++|++|++ .+++.+||+||+.+....
T Consensus 40 ~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~ 117 (265)
T TIGR02769 40 VGLLGRSGCGKSTLARLLLGLEKP--AQGTVSFRGQDLYQLDRKQRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRH 117 (265)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEEccccCHHHHHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHH
Confidence 589999999999999999999875 459999999987532 1355689999996 477889999999876432
Q ss_pred cCCCCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHH
Q 048028 73 RLPRSVTKTKKQERVEALINQLGLR-SAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVV 151 (592)
Q Consensus 73 ~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~ 151 (592)
. ......+.+++++++++.+||. +..+.. ++.|||||||||+||++|+.+|++|||||||+|||+.++..+.
T Consensus 118 ~--~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~~LSgGe~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~ 190 (265)
T TIGR02769 118 L--TSLDESEQKARIAELLDMVGLRSEDADKL-----PRQLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVIL 190 (265)
T ss_pred h--cCCCHHHHHHHHHHHHHHcCCChhhhhCC-----hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHH
Confidence 1 1223344567789999999996 555554 4569999999999999999999999999999999999999999
Q ss_pred HHHHHHHHc-CCEEEEEecCChhHHHhhhceEEEecCCeEeeecChhhHH
Q 048028 152 NVLQRIAKS-GSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNETPSNLA 200 (592)
Q Consensus 152 ~~l~~la~~-g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~~~~~ 200 (592)
+.|++++++ |+|||+++|++. .+.+++|++++|++|++++.|+++++.
T Consensus 191 ~~l~~~~~~~g~tiiivsH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~ 239 (265)
T TIGR02769 191 ELLRKLQQAFGTAYLFITHDLR-LVQSFCQRVAVMDKGQIVEECDVAQLL 239 (265)
T ss_pred HHHHHHHHhcCcEEEEEeCCHH-HHHHHhcEEEEEeCCEEEEECCHHHHc
Confidence 999999875 899999999997 578899999999999999999988763
No 138
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=3.8e-38 Score=302.67 Aligned_cols=192 Identities=31% Similarity=0.550 Sum_probs=177.8
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCcccccceeEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCH
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLESKLLKIISAYVMQDDLLFPMLTVEETLMFAAEFRLPRSVTK 80 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~ 80 (592)
.+++|||||||||.+++|.|++.+ ++|+|.++|.+++.. .+.++||+|.+..|+|.+||.|.|.|-|+++ .+++
T Consensus 31 ~GllG~NGAGKTTtfRmILglle~--~~G~I~~~g~~~~~~-~~~rIGyLPEERGLy~k~tv~dql~yla~Lk---Gm~~ 104 (300)
T COG4152 31 FGLLGPNGAGKTTTFRMILGLLEP--TEGEITWNGGPLSQE-IKNRIGYLPEERGLYPKMTVEDQLKYLAELK---GMPK 104 (300)
T ss_pred EEeecCCCCCccchHHHHhccCCc--cCceEEEcCcchhhh-hhhhcccChhhhccCccCcHHHHHHHHHHhc---CCcH
Confidence 479999999999999999999985 459999999998754 4566899999999999999999999999987 6788
Q ss_pred HHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc
Q 048028 81 TKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVNVLQRIAKS 160 (592)
Q Consensus 81 ~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~la~~ 160 (592)
++.+++++.+|+++++......+| +.||.|++|++.+..+++++|++++||||+|||||.+.+.+-+.+.+++++
T Consensus 105 ~e~~~~~~~wLer~~i~~~~~~kI-----k~LSKGnqQKIQfisaviHePeLlILDEPFSGLDPVN~elLk~~I~~lk~~ 179 (300)
T COG4152 105 AEIQKKLQAWLERLEIVGKKTKKI-----KELSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFELKEE 179 (300)
T ss_pred HHHHHHHHHHHHhccccccccchH-----HHhhhhhhHHHHHHHHHhcCCCEEEecCCccCCChhhHHHHHHHHHHHHhc
Confidence 999999999999999998876665 569999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEEecCChhHHHhhhceEEEecCCeEeeecChhhHHHHHH
Q 048028 161 GSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNETPSNLAQFFA 204 (592)
Q Consensus 161 g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~~~~~~~f~ 204 (592)
|.|||+++|.++ .+.++||++++|++|+.|.+|+.+++.+-|.
T Consensus 180 GatIifSsH~Me-~vEeLCD~llmL~kG~~V~~G~v~~ir~~~G 222 (300)
T COG4152 180 GATIIFSSHRME-HVEELCDRLLMLKKGQTVLYGTVEDIRRSFG 222 (300)
T ss_pred CCEEEEecchHH-HHHHHhhhhheecCCceEEeccHHHHHHhcC
Confidence 999999999998 6999999999999999999999999987553
No 139
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2e-37 Score=313.17 Aligned_cols=194 Identities=21% Similarity=0.352 Sum_probs=159.1
Q ss_pred CEEECCCCCcHHHHHHHHhCCC---CCCCceeEEEECCEecCc-----ccccceeEEEccCCCCCCCCCHHHHHHHHHHc
Q 048028 1 MAILGASGAGKTTLMDALAGRI---EKESLQGAVTLNGEVLES-----KLLKIISAYVMQDDLLFPMLTVEETLMFAAEF 72 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~---~~~~~~G~I~i~g~~~~~-----~~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l 72 (592)
++|+||||||||||+|+|+|+. ++.+.+|+|.++|+++.. ...++.++|++|++.+++ .|+.||+.+....
T Consensus 32 ~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~~nl~~~~~~ 110 (250)
T PRK14245 32 VAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQVDELRKNVGMVFQRPNPFP-KSIFENVAYGLRV 110 (250)
T ss_pred EEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccHHHHhhheEEEecCCccCc-ccHHHHHHHHHHH
Confidence 5899999999999999999973 332247999999998753 234567899999998887 5999999887544
Q ss_pred cCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHH
Q 048028 73 RLPRSVTKTKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVN 152 (592)
Q Consensus 73 ~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~ 152 (592)
+. ....+..+++++++++.+||.+...+.. +..++.||||||||++||++|+.+|++|+|||||+|||+.++..+.+
T Consensus 111 ~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~ 187 (250)
T PRK14245 111 NG--VKDNAFIRQRVEETLKGAALWDEVKDKL-KESAFALSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEE 187 (250)
T ss_pred cC--CCcHHHHHHHHHHHHHHcCCCcchhhhh-hCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHH
Confidence 31 1122334567889999999864322111 23456799999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCEEEEEecCChhHHHhhhceEEEecCCeEeeecChhhHH
Q 048028 153 VLQRIAKSGSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNETPSNLA 200 (592)
Q Consensus 153 ~l~~la~~g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~~~~~ 200 (592)
.|++++ +++|||+++|+++ ++.++|||+++|++|++++.|+++++.
T Consensus 188 ~l~~~~-~~~tiiivtH~~~-~~~~~~d~v~~l~~G~~~~~~~~~~~~ 233 (250)
T PRK14245 188 LIHELK-KDYTIVIVTHNMQ-QAARVSDKTAFFYMGEMVEYDDTKKIF 233 (250)
T ss_pred HHHHHh-cCCeEEEEeCCHH-HHHhhCCEEEEEECCEEEEECCHHHHh
Confidence 999995 4799999999997 588999999999999999999998763
No 140
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.9e-37 Score=316.23 Aligned_cols=189 Identities=28% Similarity=0.450 Sum_probs=161.5
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCc-----ccccceeEEEccCCC-CCCCCCHHHHHHHHHHccC
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLES-----KLLKIISAYVMQDDL-LFPMLTVEETLMFAAEFRL 74 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~-----~~~~~~~~yv~Q~~~-l~~~lTV~E~l~f~~~l~~ 74 (592)
++|+||||||||||+++|+|+.++. +|+|.++|+++.. ...++.++|++|++. .+..+||.||+.+.....
T Consensus 31 ~~l~G~nGsGKSTLl~~i~Gl~~~~--~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~e~i~~~~~~~- 107 (275)
T PRK13639 31 VALLGPNGAGKSTLFLHFNGILKPT--SGEVLIKGEPIKYDKKSLLEVRKTVGIVFQNPDDQLFAPTVEEDVAFGPLNL- 107 (275)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCCC--ccEEEECCEECccccchHHHHHhheEEEeeChhhhhccccHHHHHHHHHHHc-
Confidence 5899999999999999999998754 5999999998742 123567899999963 333469999998764321
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHH
Q 048028 75 PRSVTKTKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVNVL 154 (592)
Q Consensus 75 ~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l 154 (592)
...+.+..+++.++++.+||++..++.++ .||||||||++||++|+.+|++++|||||+|||+.++..+.+.|
T Consensus 108 --~~~~~~~~~~~~~~l~~~~L~~~~~~~~~-----~LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l 180 (275)
T PRK13639 108 --GLSKEEVEKRVKEALKAVGMEGFENKPPH-----HLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLL 180 (275)
T ss_pred --CCCHHHHHHHHHHHHHHCCCchhhcCChh-----hCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHH
Confidence 23445556778999999999887776654 59999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCEEEEEecCChhHHHhhhceEEEecCCeEeeecChhhHH
Q 048028 155 QRIAKSGSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNETPSNLA 200 (592)
Q Consensus 155 ~~la~~g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~~~~~ 200 (592)
++++++|.|||+++|+++ ++.++||++++|++|+++..|+++++.
T Consensus 181 ~~l~~~~~til~vtH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~ 225 (275)
T PRK13639 181 YDLNKEGITIIISTHDVD-LVPVYADKVYVMSDGKIIKEGTPKEVF 225 (275)
T ss_pred HHHHHCCCEEEEEecCHH-HHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 999877999999999987 588899999999999999999998763
No 141
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.9e-37 Score=309.18 Aligned_cols=188 Identities=30% Similarity=0.487 Sum_probs=163.4
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCcc-cccceeEEEccCCCCCCCCCHHHHHHHHHHccCCCCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLESK-LLKIISAYVMQDDLLFPMLTVEETLMFAAEFRLPRSVT 79 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~~-~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~ 79 (592)
++|+||||||||||+++|+|+.++. +|+|.++|.++... ..++.++|++|++.+++.+|+.||+.+..... ..+
T Consensus 28 ~~i~G~nG~GKStLl~~l~G~~~p~--~G~v~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~---~~~ 102 (235)
T cd03299 28 FVILGPTGSGKSVLLETIAGFIKPD--SGKILLNGKDITNLPPEKRDISYVPQNYALFPHMTVYKNIAYGLKKR---KVD 102 (235)
T ss_pred EEEECCCCCCHHHHHHHHhCCcCCC--ceEEEECCEEcCcCChhHcCEEEEeecCccCCCccHHHHHHHHHHHc---CCC
Confidence 4899999999999999999998754 59999999987542 23567899999999999999999998865432 223
Q ss_pred HHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Q 048028 80 KTKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVNVLQRIAK 159 (592)
Q Consensus 80 ~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~la~ 159 (592)
..+..+++.++++.+||.+..++.+ +.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++
T Consensus 103 ~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~ 177 (235)
T cd03299 103 KKEIERKVLEIAEMLGIDHLLNRKP-----ETLSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRK 177 (235)
T ss_pred HHHHHHHHHHHHHHcCChhHHhcCc-----ccCCHHHHHHHHHHHHHHcCCCEEEECCCcccCCHHHHHHHHHHHHHHHH
Confidence 4455667889999999988776655 46999999999999999999999999999999999999999999999977
Q ss_pred c-CCEEEEEecCChhHHHhhhceEEEecCCeEeeecChhhH
Q 048028 160 S-GSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNETPSNL 199 (592)
Q Consensus 160 ~-g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~~~~ 199 (592)
+ |+|+|+++|++. ++.+.+|++++|++|+++..|+++++
T Consensus 178 ~~~~tili~tH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~ 217 (235)
T cd03299 178 EFGVTVLHVTHDFE-EAWALADKVAIMLNGKLIQVGKPEEV 217 (235)
T ss_pred hcCCEEEEEecCHH-HHHHhCCEEEEEECCEEEEecCHHHH
Confidence 5 899999999997 58889999999999999999987765
No 142
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.4e-37 Score=323.54 Aligned_cols=190 Identities=26% Similarity=0.379 Sum_probs=164.3
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCcc------cccceeEEEccCC--CCCCCCCHHHHHHHHHHc
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLESK------LLKIISAYVMQDD--LLFPMLTVEETLMFAAEF 72 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~~------~~~~~~~yv~Q~~--~l~~~lTV~E~l~f~~~l 72 (592)
+||+|+||||||||+++|+|++++ .+|+|.++|+++... ..++.++||+|++ .+.|.+||.+++......
T Consensus 44 ~~IvG~sGsGKSTLl~~l~gl~~p--~~G~i~~~g~~l~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~ 121 (327)
T PRK11308 44 LAVVGESGCGKSTLARLLTMIETP--TGGELYYQGQDLLKADPEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLI 121 (327)
T ss_pred EEEECCCCCcHHHHHHHHHcCCCC--CCcEEEECCEEcCcCCHHHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHH
Confidence 589999999999999999999875 469999999987532 2456799999997 689999999999876543
Q ss_pred cCCCCCCHHHHHHHHHHHHHHcCCcc-cccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHH
Q 048028 73 RLPRSVTKTKKQERVEALINQLGLRS-AAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVV 151 (592)
Q Consensus 73 ~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~ 151 (592)
.. ...+.+.++++.++++.+||.+ ..++ ++++|||||||||+||+||+.+|++|++||||+|||..++.+++
T Consensus 122 ~~--~~~~~~~~~~~~~~l~~~gL~~~~~~~-----~p~~LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~ 194 (327)
T PRK11308 122 NT--SLSAAERREKALAMMAKVGLRPEHYDR-----YPHMFSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVL 194 (327)
T ss_pred cc--CCCHHHHHHHHHHHHHHCCCChHHhcC-----CCccCCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHH
Confidence 21 2345566788999999999963 4444 45679999999999999999999999999999999999999999
Q ss_pred HHHHHHHHc-CCEEEEEecCChhHHHhhhceEEEecCCeEeeecChhhHH
Q 048028 152 NVLQRIAKS-GSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNETPSNLA 200 (592)
Q Consensus 152 ~~l~~la~~-g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~~~~~ 200 (592)
++|+++.++ |.|+|++||+++ .+.+++|+|++|++|++++.|+.+++.
T Consensus 195 ~lL~~l~~~~g~til~iTHdl~-~~~~~adrv~vm~~G~ive~g~~~~~~ 243 (327)
T PRK11308 195 NLMMDLQQELGLSYVFISHDLS-VVEHIADEVMVMYLGRCVEKGTKEQIF 243 (327)
T ss_pred HHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEECCHHHHh
Confidence 999999875 899999999987 577899999999999999999998774
No 143
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.9e-37 Score=317.35 Aligned_cols=190 Identities=23% Similarity=0.398 Sum_probs=162.6
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCC-ceeEEEECCEecCcc---cccceeEEEccCCC-CCCCCCHHHHHHHHHHccCC
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKES-LQGAVTLNGEVLESK---LLKIISAYVMQDDL-LFPMLTVEETLMFAAEFRLP 75 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~-~~G~I~i~g~~~~~~---~~~~~~~yv~Q~~~-l~~~lTV~E~l~f~~~l~~~ 75 (592)
++|+||||||||||+++|+|+.++.. .+|+|.++|+++... ..++.+||++|++. +++..||.||+.|....+
T Consensus 36 ~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~enl~~~~~~~-- 113 (282)
T PRK13640 36 TALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDIREKVGIVFQNPDNQFVGATVGDDVAFGLENR-- 113 (282)
T ss_pred EEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHHHhheEEEEECHHHhhccCCHHHHHHhhHHhC--
Confidence 58999999999999999999987532 239999999987542 34567899999974 677789999998865432
Q ss_pred CCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHH
Q 048028 76 RSVTKTKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVNVLQ 155 (592)
Q Consensus 76 ~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~ 155 (592)
..+.++.+++++++++.+||++..++.+ +.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+
T Consensus 114 -~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----~~LS~G~~qrv~laral~~~P~llllDEPt~gLD~~~~~~l~~~l~ 187 (282)
T PRK13640 114 -AVPRPEMIKIVRDVLADVGMLDYIDSEP-----ANLSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIR 187 (282)
T ss_pred -CCCHHHHHHHHHHHHHHCCChhHhcCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHH
Confidence 2345566678999999999987776554 5699999999999999999999999999999999999999999999
Q ss_pred HHHHc-CCEEEEEecCChhHHHhhhceEEEecCCeEeeecChhhHH
Q 048028 156 RIAKS-GSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNETPSNLA 200 (592)
Q Consensus 156 ~la~~-g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~~~~~ 200 (592)
+++++ |+|||+++|+++ ++ ..||++++|++|++++.|+++++.
T Consensus 188 ~l~~~~g~tvli~tH~~~-~~-~~~d~i~~l~~G~i~~~g~~~~~~ 231 (282)
T PRK13640 188 KLKKKNNLTVISITHDID-EA-NMADQVLVLDDGKLLAQGSPVEIF 231 (282)
T ss_pred HHHHhcCCEEEEEecCHH-HH-HhCCEEEEEECCEEEEeCCHHHHh
Confidence 99875 899999999997 45 579999999999999999998764
No 144
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.5e-37 Score=314.96 Aligned_cols=191 Identities=24% Similarity=0.394 Sum_probs=161.2
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCc---ccccceeEEEccCCCCCCCCCHHHHHHHHHHccCC-C
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLES---KLLKIISAYVMQDDLLFPMLTVEETLMFAAEFRLP-R 76 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~---~~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~~-~ 76 (592)
++|+|||||||||||++|+|+.++ .+|+|.++|+++.. ...++.++|++|+..+++.+|+.||+.++...... .
T Consensus 31 ~~l~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~i~~~~~~~~~~~ 108 (255)
T PRK11231 31 TALIGPNGCGKSTLLKCFARLLTP--QSGTVFLGDKPISMLSSRQLARRLALLPQHHLTPEGITVRELVAYGRSPWLSLW 108 (255)
T ss_pred EEEECCCCCCHHHHHHHHhCCcCC--CCcEEEECCEEhHHCCHHHHhhheEEecccCCCCCCccHHHHHHhccchhhhhc
Confidence 489999999999999999999875 45999999998643 23445689999999999999999999875311000 0
Q ss_pred CCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHH
Q 048028 77 SVTKTKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVNVLQR 156 (592)
Q Consensus 77 ~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~ 156 (592)
...+.+..++++++++.+||.+..++.+ +.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|++
T Consensus 109 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~ 183 (255)
T PRK11231 109 GRLSAEDNARVNQAMEQTRINHLADRRL-----TDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRE 183 (255)
T ss_pred cCCCHHHHHHHHHHHHHcCCHHHHcCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHH
Confidence 1112334567889999999987776654 46999999999999999999999999999999999999999999999
Q ss_pred HHHcCCEEEEEecCChhHHHhhhceEEEecCCeEeeecChhhH
Q 048028 157 IAKSGSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNETPSNL 199 (592)
Q Consensus 157 la~~g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~~~~ 199 (592)
++++|+|||+++|+++ ++.+++|++++|++|+++..|+++++
T Consensus 184 l~~~~~tiii~tH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~ 225 (255)
T PRK11231 184 LNTQGKTVVTVLHDLN-QASRYCDHLVVLANGHVMAQGTPEEV 225 (255)
T ss_pred HHHCCCEEEEEECCHH-HHHHhcCEEEEEECCeEEEEcCHHHh
Confidence 9877999999999997 68899999999999999999988765
No 145
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.9e-37 Score=317.12 Aligned_cols=188 Identities=26% Similarity=0.405 Sum_probs=160.7
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCc----ccccceeEEEccCCC-CCCCCCHHHHHHHHHHccCC
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLES----KLLKIISAYVMQDDL-LFPMLTVEETLMFAAEFRLP 75 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~----~~~~~~~~yv~Q~~~-l~~~lTV~E~l~f~~~l~~~ 75 (592)
++|+||||||||||+++|+|+.++ .+|+|.++|+++.. ...++.++|++|++. .+...||.|++.|.....
T Consensus 39 ~~l~G~nGsGKSTLl~~l~Gl~~~--~~G~i~i~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~-- 114 (280)
T PRK13633 39 LVILGRNGSGKSTIAKHMNALLIP--SEGKVYVDGLDTSDEENLWDIRNKAGMVFQNPDNQIVATIVEEDVAFGPENL-- 114 (280)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEeccccccHHHHhhheEEEecChhhhhccccHHHHHHhhHhhc--
Confidence 589999999999999999999875 45999999998753 234667899999974 233469999999875432
Q ss_pred CCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHH
Q 048028 76 RSVTKTKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVNVLQ 155 (592)
Q Consensus 76 ~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~ 155 (592)
..++.+.+++++++++.+||++..++.+ +.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+
T Consensus 115 -~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~ 188 (280)
T PRK13633 115 -GIPPEEIRERVDESLKKVGMYEYRRHAP-----HLLSGGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIK 188 (280)
T ss_pred -CCCHHHHHHHHHHHHHHCCCHhHhhCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHH
Confidence 2345555678999999999988777665 4699999999999999999999999999999999999999999999
Q ss_pred HHHHc-CCEEEEEecCChhHHHhhhceEEEecCCeEeeecChhhHH
Q 048028 156 RIAKS-GSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNETPSNLA 200 (592)
Q Consensus 156 ~la~~-g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~~~~~ 200 (592)
+++++ |.|||+++|+++ ++.. +|++++|++|+++..|+++++.
T Consensus 189 ~l~~~~g~tillvtH~~~-~~~~-~d~v~~l~~G~i~~~g~~~~~~ 232 (280)
T PRK13633 189 ELNKKYGITIILITHYME-EAVE-ADRIIVMDSGKVVMEGTPKEIF 232 (280)
T ss_pred HHHHhcCCEEEEEecChH-HHhc-CCEEEEEECCEEEEecCHHHHh
Confidence 99864 999999999998 4654 9999999999999999998864
No 146
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=100.00 E-value=3e-37 Score=307.51 Aligned_cols=180 Identities=31% Similarity=0.462 Sum_probs=154.2
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCccc------c-cceeEEEccCCCCCCCCCHHHHHHHHHHcc
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLESKL------L-KIISAYVMQDDLLFPMLTVEETLMFAAEFR 73 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~~~------~-~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~ 73 (592)
++|+||||||||||+++|+|+.++. +|+|.++|+++.... . ++.++|++|++.+++.+||.||+.+....+
T Consensus 39 ~~i~G~nGsGKSTLl~~i~Gl~~p~--~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~ 116 (228)
T PRK10584 39 IALIGESGSGKSTLLAILAGLDDGS--SGEVSLVGQPLHQMDEEARAKLRAKHVGFVFQSFMLIPTLNALENVELPALLR 116 (228)
T ss_pred EEEECCCCCCHHHHHHHHHcCCCCC--CeeEEECCEEcccCCHHHHHHHHhheEEEEEcccccCCCcCHHHHHHHHHHhc
Confidence 5899999999999999999998754 599999999875321 1 246899999999999999999998865432
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHH
Q 048028 74 LPRSVTKTKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVNV 153 (592)
Q Consensus 74 ~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~ 153 (592)
..+..+.+++++++++.+++.+..++.+ ..||||||||++||++|+.+|++|+|||||+|||+.++..+.+.
T Consensus 117 ---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~Ge~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~ 188 (228)
T PRK10584 117 ---GESSRQSRNGAKALLEQLGLGKRLDHLP-----AQLSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADL 188 (228)
T ss_pred ---CCCHHHHHHHHHHHHHHcCCHhHhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHH
Confidence 1234455678899999999987776554 46999999999999999999999999999999999999999999
Q ss_pred HHHHHHc-CCEEEEEecCChhHHHhhhceEEEecCCeEee
Q 048028 154 LQRIAKS-GSIVIMSIHQPSYRILSLLDRLIILSHGQSVY 192 (592)
Q Consensus 154 l~~la~~-g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~ 192 (592)
|++++++ |.|||+++|+++ .+ +.+|++++|++|+++.
T Consensus 189 l~~~~~~~~~tii~~sH~~~-~~-~~~d~i~~l~~g~i~~ 226 (228)
T PRK10584 189 LFSLNREHGTTLILVTHDLQ-LA-ARCDRRLRLVNGQLQE 226 (228)
T ss_pred HHHHHHhcCCEEEEEecCHH-HH-HhCCEEEEEECCEEEe
Confidence 9999765 899999999997 45 5599999999999874
No 147
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.9e-37 Score=316.03 Aligned_cols=191 Identities=29% Similarity=0.419 Sum_probs=160.8
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCc---ccccceeEEEccCCCCCCCCCHHHHHHHHHHccCC-C
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLES---KLLKIISAYVMQDDLLFPMLTVEETLMFAAEFRLP-R 76 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~---~~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~~-~ 76 (592)
++|+||||||||||+++|+|+.++ .+|+|.++|+++.. ...++.++|++|+..+++.+||.||+.+....... .
T Consensus 40 ~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~ 117 (265)
T PRK10575 40 TGLIGHNGSGKSTLLKMLGRHQPP--SEGEILLDAQPLESWSSKAFARKVAYLPQQLPAAEGMTVRELVAIGRYPWHGAL 117 (265)
T ss_pred EEEECCCCCCHHHHHHHHcCCCCC--CCCEEEECCEehhhCCHHHHhhheEEeccCCCCCCCccHHHHHHhCcccccccc
Confidence 589999999999999999999875 45999999988642 23456789999998888999999999875321100 0
Q ss_pred CCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHH
Q 048028 77 SVTKTKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVNVLQR 156 (592)
Q Consensus 77 ~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~ 156 (592)
...+...+++++++++.+++++..++.++ .|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|++
T Consensus 118 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~ 192 (265)
T PRK10575 118 GRFGAADREKVEEAISLVGLKPLAHRLVD-----SLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHR 192 (265)
T ss_pred cCCCHHHHHHHHHHHHHcCCHHHhcCCcc-----cCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHH
Confidence 01122345678999999999877766554 5999999999999999999999999999999999999999999999
Q ss_pred HHHc-CCEEEEEecCChhHHHhhhceEEEecCCeEeeecChhhH
Q 048028 157 IAKS-GSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNETPSNL 199 (592)
Q Consensus 157 la~~-g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~~~~ 199 (592)
++++ |.|||+++|+++ ++.+.+|++++|++|+++..|+++++
T Consensus 193 l~~~~~~tiii~sH~~~-~i~~~~d~i~~l~~G~i~~~~~~~~~ 235 (265)
T PRK10575 193 LSQERGLTVIAVLHDIN-MAARYCDYLVALRGGEMIAQGTPAEL 235 (265)
T ss_pred HHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCeEEEecCHHHh
Confidence 9875 899999999997 68899999999999999999988765
No 148
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.2e-37 Score=316.48 Aligned_cols=187 Identities=25% Similarity=0.442 Sum_probs=160.6
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCc---ccccceeEEEccCCC-CCCCCCHHHHHHHHHHccCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLES---KLLKIISAYVMQDDL-LFPMLTVEETLMFAAEFRLPR 76 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~---~~~~~~~~yv~Q~~~-l~~~lTV~E~l~f~~~l~~~~ 76 (592)
++|+||||||||||+++|+|+.++. +|+|.++|+++.. ...++.++|++|++. .++.+||+||+.+.....
T Consensus 38 ~~l~G~nGsGKSTLl~~l~Gl~~p~--~G~I~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~--- 112 (271)
T PRK13632 38 VAILGHNGSGKSTISKILTGLLKPQ--SGEIKIDGITISKENLKEIRKKIGIIFQNPDNQFIGATVEDDIAFGLENK--- 112 (271)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCCC--CceEEECCEecCcCCHHHHhcceEEEEeCHHHhcCcccHHHHHHhHHHHc---
Confidence 4899999999999999999998754 5999999998753 234667899999974 677789999998865432
Q ss_pred CCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHH
Q 048028 77 SVTKTKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVNVLQR 156 (592)
Q Consensus 77 ~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~ 156 (592)
..+.++.+++++++++.+||++..++.+ +.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++
T Consensus 113 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrl~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~ 187 (271)
T PRK13632 113 KVPPKKMKDIIDDLAKKVGMEDYLDKEP-----QNLSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIKKIMVD 187 (271)
T ss_pred CCCHHHHHHHHHHHHHHcCCHHHhhCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 2234445667899999999988776655 46999999999999999999999999999999999999999999999
Q ss_pred HHHc-CCEEEEEecCChhHHHhhhceEEEecCCeEeeecChhhH
Q 048028 157 IAKS-GSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNETPSNL 199 (592)
Q Consensus 157 la~~-g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~~~~ 199 (592)
++++ ++|||+++|+++ ++ ..||++++|++|+++..|+++++
T Consensus 188 ~~~~~~~tiii~sH~~~-~~-~~~d~v~~l~~G~i~~~g~~~~~ 229 (271)
T PRK13632 188 LRKTRKKTLISITHDMD-EA-ILADKVIVFSEGKLIAQGKPKEI 229 (271)
T ss_pred HHHhcCcEEEEEEechh-HH-hhCCEEEEEECCEEEEecCHHHH
Confidence 9876 589999999997 45 47999999999999999988765
No 149
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=100.00 E-value=3.3e-37 Score=308.91 Aligned_cols=183 Identities=28% Similarity=0.455 Sum_probs=157.0
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCc--ccccceeEEEc-cCCCCCCCCCHHHHHHHHHHccCCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLES--KLLKIISAYVM-QDDLLFPMLTVEETLMFAAEFRLPRS 77 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~--~~~~~~~~yv~-Q~~~l~~~lTV~E~l~f~~~l~~~~~ 77 (592)
++|+|||||||||||++|+|+.+|. +|+|.++|+++.. ...++.++|++ |++.+++.+||+|++.+....+ .
T Consensus 50 ~~i~G~NGsGKSTLl~~i~Gl~~p~--~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~tv~e~l~~~~~~~---~ 124 (236)
T cd03267 50 VGFIGPNGAGKTTTLKILSGLLQPT--SGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWWDLPVIDSFYLLAAIY---D 124 (236)
T ss_pred EEEECCCCCCHHHHHHHHhCCcCCC--ceEEEECCEEccccchhhcccEEEEcCCccccCCCCcHHHHHHHHHHHc---C
Confidence 4899999999999999999998754 5999999987532 23456789997 5567888999999998876543 2
Q ss_pred CCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 048028 78 VTKTKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVNVLQRI 157 (592)
Q Consensus 78 ~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~l 157 (592)
...++..++++++++.+|+.+..|+.++ .||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++
T Consensus 125 ~~~~~~~~~~~~~l~~~gl~~~~~~~~~-----~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~ 199 (236)
T cd03267 125 LPPARFKKRLDELSELLDLEELLDTPVR-----QLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEY 199 (236)
T ss_pred CCHHHHHHHHHHHHHHcCChhHhcCChh-----hCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHH
Confidence 2344455678899999999888777654 59999999999999999999999999999999999999999999999
Q ss_pred HHc-CCEEEEEecCChhHHHhhhceEEEecCCeEeeec
Q 048028 158 AKS-GSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNE 194 (592)
Q Consensus 158 a~~-g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g 194 (592)
+++ ++|||+++|+++ ++.+++|++++|++|++++.|
T Consensus 200 ~~~~~~tiiivsH~~~-~~~~~~d~i~~l~~G~i~~~g 236 (236)
T cd03267 200 NRERGTTVLLTSHYMK-DIEALARRVLVIDKGRLLYDG 236 (236)
T ss_pred HhcCCCEEEEEecCHH-HHHHhCCEEEEEeCCEEEecC
Confidence 875 889999999997 688999999999999998764
No 150
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.4e-37 Score=344.83 Aligned_cols=193 Identities=23% Similarity=0.375 Sum_probs=165.1
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCccc----ccceeEEEccCCCCCCCCCHHHHHHHHHHccCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLESKL----LKIISAYVMQDDLLFPMLTVEETLMFAAEFRLPR 76 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~~~----~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~~~ 76 (592)
++|+||||||||||||+|+|+.++++.+|+|.++|+++.... .++.++||+|++.+++.+||+||+.+....+...
T Consensus 34 ~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~ 113 (506)
T PRK13549 34 VSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTERAGIAIIHQELALVKELSVLENIFLGNEITPGG 113 (506)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHHCCeEEEEeccccCCCCcHHHHhhhcccccccC
Confidence 489999999999999999999875335799999999875321 2456899999999999999999998875432111
Q ss_pred CCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHH
Q 048028 77 SVTKTKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVNVLQR 156 (592)
Q Consensus 77 ~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~ 156 (592)
..+.++.+++++++++.+|+.+..++.++ .|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|++
T Consensus 114 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~ 188 (506)
T PRK13549 114 IMDYDAMYLRAQKLLAQLKLDINPATPVG-----NLGLGQQQLVEIAKALNKQARLLILDEPTASLTESETAVLLDIIRD 188 (506)
T ss_pred CcCHHHHHHHHHHHHHHcCCCCCcccchh-----hCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Confidence 12334455678999999999877776654 5999999999999999999999999999999999999999999999
Q ss_pred HHHcCCEEEEEecCChhHHHhhhceEEEecCCeEeeecChhhH
Q 048028 157 IAKSGSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNETPSNL 199 (592)
Q Consensus 157 la~~g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~~~~ 199 (592)
++++|+|||+++|+++ ++.++||++++|++|++++.|+++++
T Consensus 189 l~~~~~tvi~~tH~~~-~~~~~~d~v~~l~~G~i~~~~~~~~~ 230 (506)
T PRK13549 189 LKAHGIACIYISHKLN-EVKAISDTICVIRDGRHIGTRPAAGM 230 (506)
T ss_pred HHHCCCEEEEEeCcHH-HHHHhcCEEEEEECCEEeeecccccC
Confidence 9888999999999997 68889999999999999999988764
No 151
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=100.00 E-value=2.1e-37 Score=313.81 Aligned_cols=178 Identities=25% Similarity=0.431 Sum_probs=155.1
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCcccccceeEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCH
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLESKLLKIISAYVMQDDLLFPMLTVEETLMFAAEFRLPRSVTK 80 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~ 80 (592)
++|+||||||||||+++|+|+.++. +|+|.++|.++. ..++.++|++|++.+++.+||+||+.+...
T Consensus 41 ~~I~G~NGsGKSTLlk~l~Gl~~p~--~G~i~~~g~~~~--~~~~~i~~v~q~~~l~~~~tv~enl~~~~~--------- 107 (257)
T PRK11247 41 VAVVGRSGCGKSTLLRLLAGLETPS--AGELLAGTAPLA--EAREDTRLMFQDARLLPWKKVIDNVGLGLK--------- 107 (257)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCCC--CeEEEECCEEHH--HhhCceEEEecCccCCCCCcHHHHHHhccc---------
Confidence 5899999999999999999998754 599999998764 345668999999999999999999987421
Q ss_pred HHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH-
Q 048028 81 TKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVNVLQRIAK- 159 (592)
Q Consensus 81 ~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~la~- 159 (592)
...+++++++++.+||.+..+..+ ..|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++
T Consensus 108 ~~~~~~~~~~l~~~gl~~~~~~~~-----~~LSgGqkqrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~ 182 (257)
T PRK11247 108 GQWRDAALQALAAVGLADRANEWP-----AALSGGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQ 182 (257)
T ss_pred chHHHHHHHHHHHcCChhHhcCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 112456889999999987766554 56999999999999999999999999999999999999999999999976
Q ss_pred cCCEEEEEecCChhHHHhhhceEEEecCCeEeeecChh
Q 048028 160 SGSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNETPS 197 (592)
Q Consensus 160 ~g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~~ 197 (592)
.|+|||+++|+++ ++.++||++++|++|++++.|+.+
T Consensus 183 ~~~tviivsHd~~-~~~~~~d~i~~l~~G~i~~~~~~~ 219 (257)
T PRK11247 183 HGFTVLLVTHDVS-EAVAMADRVLLIEEGKIGLDLTVD 219 (257)
T ss_pred cCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEeecccc
Confidence 4899999999997 578899999999999999887754
No 152
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=100.00 E-value=2.4e-37 Score=313.67 Aligned_cols=191 Identities=28% Similarity=0.420 Sum_probs=160.7
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCc---ccccceeEEEccCCCCCCCCCHHHHHHHHHH-ccCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLES---KLLKIISAYVMQDDLLFPMLTVEETLMFAAE-FRLPR 76 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~---~~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~-l~~~~ 76 (592)
++|+||||||||||+++|+|+.++. +|+|.++|+++.. ...++.++|++|++.+++.+||+||+.+... .+...
T Consensus 30 ~~i~G~nGsGKSTLl~~i~G~~~~~--~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~ 107 (256)
T TIGR03873 30 TGLLGPNGSGKSTLLRLLAGALRPD--AGTVDLAGVDLHGLSRRARARRVALVEQDSDTAVPLTVRDVVALGRIPHRSLW 107 (256)
T ss_pred EEEECCCCCCHHHHHHHHcCCCCCC--CCEEEECCEEcccCCHHHHhhheEEecccCccCCCCCHHHHHHhcchhhhhhc
Confidence 5899999999999999999998754 5999999998753 2334568999999888888999999987531 10000
Q ss_pred CCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHH
Q 048028 77 SVTKTKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVNVLQR 156 (592)
Q Consensus 77 ~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~ 156 (592)
.....+..++++++++.+++.+..++.+ ..||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++
T Consensus 108 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~ 182 (256)
T TIGR03873 108 AGDSPHDAAVVDRALARTELSHLADRDM-----STLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRE 182 (256)
T ss_pred cCCCHHHHHHHHHHHHHcCcHhhhcCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHH
Confidence 1112334467899999999987776655 46999999999999999999999999999999999999999999999
Q ss_pred HHHcCCEEEEEecCChhHHHhhhceEEEecCCeEeeecChhhH
Q 048028 157 IAKSGSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNETPSNL 199 (592)
Q Consensus 157 la~~g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~~~~ 199 (592)
++++|.|||+++|+++ ++.++||++++|++|+++..|+.+++
T Consensus 183 ~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~ 224 (256)
T TIGR03873 183 LAATGVTVVAALHDLN-LAASYCDHVVVLDGGRVVAAGPPREV 224 (256)
T ss_pred HHhcCCEEEEEeCCHH-HHHHhCCEEEEEeCCCEEEecCHHHh
Confidence 9877899999999998 68899999999999999999988765
No 153
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=5.3e-37 Score=306.66 Aligned_cols=188 Identities=30% Similarity=0.471 Sum_probs=163.5
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCcc-cccceeEEEccCCCCCCCCCHHHHHHHHHHccCCCCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLESK-LLKIISAYVMQDDLLFPMLTVEETLMFAAEFRLPRSVT 79 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~~-~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~ 79 (592)
++|+||||||||||+++|+|..++. +|+|.++|+++... ..++.++|++|++.+++.+|++||+.+....+ ..+
T Consensus 29 ~~i~G~nGsGKSTLl~~l~g~~~~~--~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~nl~~~~~~~---~~~ 103 (232)
T cd03300 29 FTLLGPSGCGKTTLLRLIAGFETPT--SGEILLDGKDITNLPPHKRPVNTVFQNYALFPHLTVFENIAFGLRLK---KLP 103 (232)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCCC--ceEEEECCEEcCcCChhhcceEEEecccccCCCCcHHHHHHHHHHhc---CCC
Confidence 5899999999999999999998854 59999999987542 23467899999999999999999998876543 123
Q ss_pred HHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Q 048028 80 KTKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVNVLQRIAK 159 (592)
Q Consensus 80 ~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~la~ 159 (592)
....+++++++++.+|+++..++.+ +.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++
T Consensus 104 ~~~~~~~~~~~l~~~~l~~~~~~~~-----~~lS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~ 178 (232)
T cd03300 104 KAEIKERVAEALDLVQLEGYANRKP-----SQLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQK 178 (232)
T ss_pred HHHHHHHHHHHHHHcCCchhhcCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH
Confidence 3445567889999999988776654 56999999999999999999999999999999999999999999999987
Q ss_pred c-CCEEEEEecCChhHHHhhhceEEEecCCeEeeecChhhH
Q 048028 160 S-GSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNETPSNL 199 (592)
Q Consensus 160 ~-g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~~~~ 199 (592)
+ |+|||+++|++. ++.+.+|++++|++|++++.|+.+++
T Consensus 179 ~~~~tiii~sh~~~-~~~~~~d~i~~l~~G~~~~~~~~~~~ 218 (232)
T cd03300 179 ELGITFVFVTHDQE-EALTMSDRIAVMNKGKIQQIGTPEEI 218 (232)
T ss_pred HcCCEEEEEeCCHH-HHHHhcCEEEEEECCEEEecCCHHHH
Confidence 5 899999999997 58899999999999999999987665
No 154
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.2e-37 Score=312.25 Aligned_cols=194 Identities=24% Similarity=0.394 Sum_probs=160.3
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCC---CceeEEEECCEecCc-----ccccceeEEEccCCCCCCCCCHHHHHHHHHHc
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKE---SLQGAVTLNGEVLES-----KLLKIISAYVMQDDLLFPMLTVEETLMFAAEF 72 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~---~~~G~I~i~g~~~~~-----~~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l 72 (592)
++|+|||||||||||++|+|+.++. +.+|+|.++|+++.. ...++.++|++|++.+++.+||+||+.+....
T Consensus 33 ~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~ 112 (258)
T PRK14241 33 TAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPVAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKL 112 (258)
T ss_pred EEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccChHHHhcceEEEccccccCCCCcHHHHHHHHHHh
Confidence 5899999999999999999998642 257999999998732 23456789999999999999999999887643
Q ss_pred cCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHH
Q 048028 73 RLPRSVTKTKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVN 152 (592)
Q Consensus 73 ~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~ 152 (592)
+. ..++++.+++++++++.+|+.+...... +..+++|||||||||+||++|+.+|++|+|||||+|||+.++..+.+
T Consensus 113 ~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~ 189 (258)
T PRK14241 113 NG--VRNKKDLDELVEKSLRGANLWNEVKDRL-DKPGGGLSGGQQQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIED 189 (258)
T ss_pred cC--CCCHHHHHHHHHHHHHHcCCchhhhhHh-hCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHH
Confidence 31 1233445667899999999852111111 23456799999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCEEEEEecCChhHHHhhhceEEEec------CCeEeeecChhhH
Q 048028 153 VLQRIAKSGSIVIMSIHQPSYRILSLLDRLIILS------HGQSVYNETPSNL 199 (592)
Q Consensus 153 ~l~~la~~g~tvi~~~H~~~~~i~~~~D~v~ll~------~G~~v~~g~~~~~ 199 (592)
.|+++++ ++|||+++|+++ ++.+++|++++|+ +|++++.|+++++
T Consensus 190 ~l~~~~~-~~tviivsH~~~-~~~~~~d~i~~l~~~~~~~~g~i~~~~~~~~~ 240 (258)
T PRK14241 190 LINELKQ-DYTIVIVTHNMQ-QAARVSDQTAFFNLEATGKPGRLVEIDDTEKI 240 (258)
T ss_pred HHHHHhc-CCEEEEEecCHH-HHHHhCCEEEEEecccCCCCceEEecCCHHHH
Confidence 9999964 689999999997 5889999999997 7999999998776
No 155
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=2e-37 Score=309.17 Aligned_cols=185 Identities=26% Similarity=0.412 Sum_probs=156.8
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCcc----cccceeEEEccCCCCCCCCCHHHHHHHHHHccCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLESK----LLKIISAYVMQDDLLFPMLTVEETLMFAAEFRLPR 76 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~~----~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~~~ 76 (592)
++|+||||||||||+++|+|+.++ .+|+|.++|.++... ..++.++|++|++.+++.+|++||+.+....+.
T Consensus 29 ~~l~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~-- 104 (230)
T TIGR03410 29 TCVLGRNGVGKTTLLKTLMGLLPV--KSGSIRLDGEDITKLPPHERARAGIAYVPQGREIFPRLTVEENLLTGLAALP-- 104 (230)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCC--CCCEEEECCEECCCCCHHHHHHhCeEEeccCCcccCCCcHHHHHHHHHHhcC--
Confidence 489999999999999999999875 459999999987532 124568999999999999999999988754321
Q ss_pred CCCHHHHHHHHHHHHHHcC-CcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHH
Q 048028 77 SVTKTKKQERVEALINQLG-LRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVNVLQ 155 (592)
Q Consensus 77 ~~~~~~~~~~v~~~l~~lg-L~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~ 155 (592)
.. .++.++++++.++ +.+..++. ++.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+
T Consensus 105 -~~---~~~~~~~~l~~~~~l~~~~~~~-----~~~LS~G~~qrv~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~ 175 (230)
T TIGR03410 105 -RR---SRKIPDEIYELFPVLKEMLGRR-----GGDLSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIR 175 (230)
T ss_pred -cc---hHHHHHHHHHHHHhHHHHhhCC-----hhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHH
Confidence 11 2234577788776 55555544 45699999999999999999999999999999999999999999999
Q ss_pred HHHHc-CCEEEEEecCChhHHHhhhceEEEecCCeEeeecChhhH
Q 048028 156 RIAKS-GSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNETPSNL 199 (592)
Q Consensus 156 ~la~~-g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~~~~ 199 (592)
+++++ |+|+|+++|+++ ++.+++|++++|++|+++..|+++++
T Consensus 176 ~~~~~~~~tii~~sH~~~-~~~~~~d~v~~l~~g~i~~~~~~~~~ 219 (230)
T TIGR03410 176 RLRAEGGMAILLVEQYLD-FARELADRYYVMERGRVVASGAGDEL 219 (230)
T ss_pred HHHHcCCcEEEEEeCCHH-HHHHhCCEEEEEECCEEEEECCHHHc
Confidence 99875 899999999997 68889999999999999999998776
No 156
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.9e-37 Score=322.82 Aligned_cols=197 Identities=20% Similarity=0.301 Sum_probs=160.9
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCC--CCceeEEEECCEecCcc---c----ccceeEEEccCCC--CCCCCCHHHHHHHH
Q 048028 1 MAILGASGAGKTTLMDALAGRIEK--ESLQGAVTLNGEVLESK---L----LKIISAYVMQDDL--LFPMLTVEETLMFA 69 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~--~~~~G~I~i~g~~~~~~---~----~~~~~~yv~Q~~~--l~~~lTV~E~l~f~ 69 (592)
++|+|+||||||||+++|+|+.++ ...+|+|.++|+++... . .++.++||+|++. +.|.+||.+++...
T Consensus 36 ~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~ 115 (330)
T PRK15093 36 RGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRERRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQN 115 (330)
T ss_pred EEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecCcchhcCccccHHHHHHHH
Confidence 589999999999999999999863 13579999999987531 1 1346899999975 78899999999764
Q ss_pred HHccC--CCC-CCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHH
Q 048028 70 AEFRL--PRS-VTKTKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTS 146 (592)
Q Consensus 70 ~~l~~--~~~-~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~ 146 (592)
..... ... ....+.++++.++++.+||.+..+. .+.++.+|||||||||+||+||+.+|++|+|||||+|||+.+
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~--~~~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~ 193 (330)
T PRK15093 116 IPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDA--MRSFPYELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTT 193 (330)
T ss_pred HHhhhccccccccHHHHHHHHHHHHHHCCCCChHHH--HhCCchhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHH
Confidence 32110 000 1123445788999999999753221 134567899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHc-CCEEEEEecCChhHHHhhhceEEEecCCeEeeecChhhHH
Q 048028 147 AFMVVNVLQRIAKS-GSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNETPSNLA 200 (592)
Q Consensus 147 ~~~i~~~l~~la~~-g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~~~~~ 200 (592)
+.+++++|+++.++ |.|+|++|||++ .+.+++||+++|++|++++.|+++++.
T Consensus 194 ~~~i~~lL~~l~~~~g~tii~itHdl~-~v~~~~dri~vm~~G~ive~g~~~~i~ 247 (330)
T PRK15093 194 QAQIFRLLTRLNQNNNTTILLISHDLQ-MLSQWADKINVLYCGQTVETAPSKELV 247 (330)
T ss_pred HHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 99999999999875 899999999997 588999999999999999999987763
No 157
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=100.00 E-value=4.2e-37 Score=308.38 Aligned_cols=189 Identities=28% Similarity=0.481 Sum_probs=164.0
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCcc-cccceeEEEccCCCCCCCCCHHHHHHHHHHccCCCCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLESK-LLKIISAYVMQDDLLFPMLTVEETLMFAAEFRLPRSVT 79 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~~-~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~ 79 (592)
++|+||||||||||+++|+|..++. +|+|.++|.++... ..++.++|++|++.+++.+|+.||+.+....+ ...
T Consensus 29 ~~l~G~nGsGKSTLl~~i~G~~~~~--~G~i~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~---~~~ 103 (237)
T TIGR00968 29 VALLGPSGSGKSTLLRIIAGLEQPD--SGRIRLNGQDATRVHARDRKIGFVFQHYALFKHLTVRDNIAFGLEIR---KHP 103 (237)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCCC--ceEEEECCEEcCcCChhhcCEEEEecChhhccCCcHHHHHHhHHHhc---CCC
Confidence 4899999999999999999998754 59999999987542 23467899999999999999999998876543 123
Q ss_pred HHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Q 048028 80 KTKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVNVLQRIAK 159 (592)
Q Consensus 80 ~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~la~ 159 (592)
.....+.++++++.+++.+..++.+ +.||+||+||++||++|+.+|++++|||||+|||+.++..+.+.|+++++
T Consensus 104 ~~~~~~~~~~~l~~~~l~~~~~~~~-----~~lS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~ 178 (237)
T TIGR00968 104 KAKIKARVEELLELVQLEGLGDRYP-----NQLSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHD 178 (237)
T ss_pred HHHHHHHHHHHHHHcCCHhHhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH
Confidence 3444567899999999987776655 45999999999999999999999999999999999999999999999987
Q ss_pred c-CCEEEEEecCChhHHHhhhceEEEecCCeEeeecChhhHH
Q 048028 160 S-GSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNETPSNLA 200 (592)
Q Consensus 160 ~-g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~~~~~ 200 (592)
+ |+|||++||+++ ++.+++|++++|++|++++.|+.+++.
T Consensus 179 ~~~~tvli~sH~~~-~~~~~~d~i~~l~~g~i~~~~~~~~~~ 219 (237)
T TIGR00968 179 EVHVTTVFVTHDQE-EAMEVADRIVVMSNGKIEQIGSPDEVY 219 (237)
T ss_pred hcCCEEEEEeCCHH-HHHhhcCEEEEEECCEEEEecCHHHHH
Confidence 6 899999999997 688999999999999999999987763
No 158
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.9e-37 Score=310.31 Aligned_cols=194 Identities=24% Similarity=0.373 Sum_probs=159.8
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCC-CCceeEEEECCEecCc---ccccceeEEEccCCCCCCCCCHHHHHHHHHHccCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRIEK-ESLQGAVTLNGEVLES---KLLKIISAYVMQDDLLFPMLTVEETLMFAAEFRLPR 76 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~-~~~~G~I~i~g~~~~~---~~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~~~ 76 (592)
++|+||||||||||+|+|+|+.++ .+.+|+|.++|+++.. ...++.++|++|++.+++ .||+||+.+....+..
T Consensus 31 ~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~l~~-~tv~eni~~~~~~~~~- 108 (246)
T PRK14269 31 TALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKNVGMVFQQPNVFV-KSIYENISYAPKLHGM- 108 (246)
T ss_pred EEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHhhhEEEEecCCcccc-ccHHHHhhhHHhhcCc-
Confidence 489999999999999999999753 3457999999998753 234567899999998887 6999999887543311
Q ss_pred CCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHH
Q 048028 77 SVTKTKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVNVLQR 156 (592)
Q Consensus 77 ~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~ 156 (592)
.....+.+++++++++.+++.+...... +..++.||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|++
T Consensus 109 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~ 187 (246)
T PRK14269 109 IKNKDEEEALVVDCLQKVGLFEEVKDKL-KQNALALSGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKE 187 (246)
T ss_pred ccChHHHHHHHHHHHHHcCCChhhhHHh-cCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHH
Confidence 0122344567889999999954221111 334567999999999999999999999999999999999999999999999
Q ss_pred HHHcCCEEEEEecCChhHHHhhhceEEEecCCeEeeecChhhH
Q 048028 157 IAKSGSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNETPSNL 199 (592)
Q Consensus 157 la~~g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~~~~ 199 (592)
+++ |+|+|+++|+++ ++.+.+|++++|++|++++.|+++++
T Consensus 188 ~~~-~~tiii~tH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~ 228 (246)
T PRK14269 188 LSH-NLSMIMVTHNMQ-QGKRVADYTAFFHLGELIEFGESKEF 228 (246)
T ss_pred HhC-CCEEEEEecCHH-HHHhhCcEEEEEECCEEEEECCHHHH
Confidence 965 899999999997 58889999999999999999998765
No 159
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.2e-37 Score=311.32 Aligned_cols=193 Identities=23% Similarity=0.369 Sum_probs=158.8
Q ss_pred CEEECCCCCcHHHHHHHHhCCCC--C-CCceeEEEECCEecCc-----ccccceeEEEccCCCCCCCCCHHHHHHHHHHc
Q 048028 1 MAILGASGAGKTTLMDALAGRIE--K-ESLQGAVTLNGEVLES-----KLLKIISAYVMQDDLLFPMLTVEETLMFAAEF 72 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~--~-~~~~G~I~i~g~~~~~-----~~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l 72 (592)
++|+||||||||||||+|+|+.+ + .+.+|+|.++|+++.. ...++.++|++|++.+++ .||+||+.+....
T Consensus 35 ~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~ 113 (253)
T PRK14242 35 TALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDVVELRRRVGMVFQKPNPFP-KSIFENVAYGLRV 113 (253)
T ss_pred EEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCHHHHhhcEEEEecCCCCCc-CcHHHHHHHHHHH
Confidence 58999999999999999999864 1 1357999999998743 133567899999998888 4999999987543
Q ss_pred cCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHH
Q 048028 73 RLPRSVTKTKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVN 152 (592)
Q Consensus 73 ~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~ 152 (592)
+. ....++.+++++++++.+|+.+...... +..++.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+
T Consensus 114 ~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LSgGq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~ 190 (253)
T PRK14242 114 NG--VKDKAYLAERVERSLRHAALWDEVKDRL-HESALGLSGGQQQRLCIARALAVEPEVLLMDEPASALDPIATQKIEE 190 (253)
T ss_pred cC--CCCHHHHHHHHHHHHHHcCCchhhhHHh-hCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHH
Confidence 31 1123344577889999999864222211 33456799999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCEEEEEecCChhHHHhhhceEEEecCCeEeeecChhhH
Q 048028 153 VLQRIAKSGSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNETPSNL 199 (592)
Q Consensus 153 ~l~~la~~g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~~~~ 199 (592)
.|+++++ ++|||+++|+++ ++.+++|++++|++|+++..|+++++
T Consensus 191 ~l~~~~~-~~tvii~tH~~~-~~~~~~d~v~~l~~G~i~~~g~~~~~ 235 (253)
T PRK14242 191 LIHELKA-RYTIIIVTHNMQ-QAARVSDVTAFFYMGKLIEVGPTEQI 235 (253)
T ss_pred HHHHHhc-CCeEEEEEecHH-HHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999954 789999999997 58899999999999999999988765
No 160
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.6e-37 Score=315.05 Aligned_cols=192 Identities=24% Similarity=0.379 Sum_probs=161.2
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCc---ccccceeEEEccCCCCCCCCCHHHHHHHHHHccCC-C
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLES---KLLKIISAYVMQDDLLFPMLTVEETLMFAAEFRLP-R 76 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~---~~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~~-~ 76 (592)
++|+|||||||||||++|+|+.++. +|+|.++|+++.. ...++.++|++|++.+++.+||+||+.+...-..+ .
T Consensus 36 ~~i~G~nGsGKSTLl~~i~G~~~~~--~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~ 113 (265)
T PRK10253 36 TAIIGPNGCGKSTLLRTLSRLMTPA--HGHVWLDGEHIQHYASKEVARRIGLLAQNATTPGDITVQELVARGRYPHQPLF 113 (265)
T ss_pred EEEECCCCCCHHHHHHHHcCCCCCC--CcEEEECCEEhhhCCHHHHhhheEEeeccCcCCCCCcHHHHHHhCcccccccc
Confidence 4899999999999999999998754 5999999998743 23345689999999999999999999875211100 0
Q ss_pred CCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHH
Q 048028 77 SVTKTKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVNVLQR 156 (592)
Q Consensus 77 ~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~ 156 (592)
....+..+++++++++.+||.+..++.+ +.||||||||++||+||+.+|++++|||||+|||+.++..+.+.|++
T Consensus 114 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~ 188 (265)
T PRK10253 114 TRWRKEDEEAVTKAMQATGITHLADQSV-----DTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSE 188 (265)
T ss_pred cCCCHHHHHHHHHHHHHcCCHHHhcCCc-----ccCChHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHH
Confidence 0112234567889999999987666554 56999999999999999999999999999999999999999999999
Q ss_pred HHHc-CCEEEEEecCChhHHHhhhceEEEecCCeEeeecChhhHH
Q 048028 157 IAKS-GSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNETPSNLA 200 (592)
Q Consensus 157 la~~-g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~~~~~ 200 (592)
++++ |.|||+++|++. ++.+++|++++|++|++++.|+++++.
T Consensus 189 l~~~~~~tiii~tH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~ 232 (265)
T PRK10253 189 LNREKGYTLAAVLHDLN-QACRYASHLIALREGKIVAQGAPKEIV 232 (265)
T ss_pred HHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 9874 899999999997 688999999999999999999987753
No 161
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.2e-37 Score=318.20 Aligned_cols=187 Identities=27% Similarity=0.421 Sum_probs=158.0
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCc--------ccccceeEEEccCCC--CCCCCCHHHHHHHHH
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLES--------KLLKIISAYVMQDDL--LFPMLTVEETLMFAA 70 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~--------~~~~~~~~yv~Q~~~--l~~~lTV~E~l~f~~ 70 (592)
++|+||||||||||+|+|+|++++. +|+|.++|+++.. ...++.++|++|++. +++ .||+||+.+..
T Consensus 40 ~~l~G~nGsGKSTLl~~l~Gl~~p~--~G~i~~~g~~i~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~-~tv~enl~~~~ 116 (289)
T PRK13645 40 TCVIGTTGSGKSTMIQLTNGLIISE--TGQTIVGDYAIPANLKKIKEVKRLRKEIGLVFQFPEYQLFQ-ETIEKDIAFGP 116 (289)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCCC--CceEEECCEEccccccccccHHHHhccEEEEEeCcchhhhh-hHHHHHHHHHH
Confidence 5899999999999999999998754 5999999988631 234567899999973 444 59999998865
Q ss_pred HccCCCCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHH
Q 048028 71 EFRLPRSVTKTKKQERVEALINQLGLR-SAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFM 149 (592)
Q Consensus 71 ~l~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~ 149 (592)
... ....++..++++++++.++|. +..++.+ +.||||||||++||++|+.+|++|+|||||+|||+.++..
T Consensus 117 ~~~---~~~~~~~~~~~~~ll~~~~L~~~~~~~~~-----~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~ 188 (289)
T PRK13645 117 VNL---GENKQEAYKKVPELLKLVQLPEDYVKRSP-----FELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEED 188 (289)
T ss_pred HHc---CCCHHHHHHHHHHHHHHcCCChhHhcCCh-----hhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHH
Confidence 422 223444556788999999994 5555544 5699999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHc-CCEEEEEecCChhHHHhhhceEEEecCCeEeeecChhhH
Q 048028 150 VVNVLQRIAKS-GSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNETPSNL 199 (592)
Q Consensus 150 i~~~l~~la~~-g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~~~~ 199 (592)
+.+.|++++++ |+|||+++|+++ ++.++||++++|++|++++.|+++++
T Consensus 189 l~~~l~~~~~~~~~tiiiisH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~ 238 (289)
T PRK13645 189 FINLFERLNKEYKKRIIMVTHNMD-QVLRIADEVIVMHEGKVISIGSPFEI 238 (289)
T ss_pred HHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 99999999864 899999999997 68899999999999999999998776
No 162
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.7e-37 Score=309.72 Aligned_cols=194 Identities=20% Similarity=0.368 Sum_probs=160.7
Q ss_pred CEEECCCCCcHHHHHHHHhCCCC--CC-CceeEEEECCEecCc-----ccccceeEEEccCCCCCCCCCHHHHHHHHHHc
Q 048028 1 MAILGASGAGKTTLMDALAGRIE--KE-SLQGAVTLNGEVLES-----KLLKIISAYVMQDDLLFPMLTVEETLMFAAEF 72 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~--~~-~~~G~I~i~g~~~~~-----~~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l 72 (592)
++|+||||||||||+++|+|+.+ +. +.+|+|.++|+++.. ...++.++|++|+..+++.+|++||+.+....
T Consensus 33 ~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~ 112 (252)
T PRK14256 33 TAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKL 112 (252)
T ss_pred EEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCChHHhhccEEEEecCCCCCCcCcHHHHHHhHHHh
Confidence 58999999999999999999975 32 247999999998742 23466789999999999999999999876543
Q ss_pred cCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHH
Q 048028 73 RLPRSVTKTKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVN 152 (592)
Q Consensus 73 ~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~ 152 (592)
. ...+..+.+++++++++.+++.+...... +..++.||||||||++||++|+.+|++|+|||||+|||+.++..+.+
T Consensus 113 ~--~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~ 189 (252)
T PRK14256 113 N--GRVNRSEADEIVESSLKRVALWDEVKDRL-KSNAMELSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEE 189 (252)
T ss_pred c--CCCCHHHHHHHHHHHHHHcCCchhhhHHh-hCCcCcCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHH
Confidence 2 11233444567899999999864221111 23456799999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCEEEEEecCChhHHHhhhceEEEecCCeEeeecChhhH
Q 048028 153 VLQRIAKSGSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNETPSNL 199 (592)
Q Consensus 153 ~l~~la~~g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~~~~ 199 (592)
.|+++++ ++|||+++|+++ ++.++||++++|++|+++..|+++++
T Consensus 190 ~l~~~~~-~~tiiivsH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~ 234 (252)
T PRK14256 190 LIEELKE-KYTIIIVTHNMQ-QAARVSDYTAFFYMGDLVECGETKKI 234 (252)
T ss_pred HHHHHHh-CCcEEEEECCHH-HHHhhCCEEEEEECCEEEEeCCHHHH
Confidence 9999976 689999999997 68899999999999999999998765
No 163
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=100.00 E-value=3.7e-37 Score=305.96 Aligned_cols=188 Identities=27% Similarity=0.436 Sum_probs=157.2
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCcccccceeEEEccCCCCC--CCCCHHHHHHHHHHccCC-CC
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLESKLLKIISAYVMQDDLLF--PMLTVEETLMFAAEFRLP-RS 77 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~~~~~~~~~yv~Q~~~l~--~~lTV~E~l~f~~~l~~~-~~ 77 (592)
++|+||||||||||+++|+|+.++. +|+|.+||+++.. .++.++|++|++.++ ..+|+.||+.+....... ..
T Consensus 9 ~~l~G~nGsGKSTLl~~l~G~~~~~--~G~i~~~g~~~~~--~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~ 84 (223)
T TIGR03771 9 LGLLGPNGAGKTTLLRAILGLIPPA--KGTVKVAGASPGK--GWRHIGYVPQRHEFAWDFPISVAHTVMSGRTGHIGWLR 84 (223)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCCC--CceEEECCccchH--hhCcEEEecccccccCCCCccHHHHHHhcccccccccc
Confidence 5899999999999999999998754 5999999987642 346689999998764 347999999875321100 00
Q ss_pred CCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 048028 78 VTKTKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVNVLQRI 157 (592)
Q Consensus 78 ~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~l 157 (592)
....+.+++++++++.+++++..++.+ ++||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++
T Consensus 85 ~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~laral~~~p~llilDEP~~~LD~~~~~~l~~~l~~~ 159 (223)
T TIGR03771 85 RPCVADFAAVRDALRRVGLTELADRPV-----GELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIEL 159 (223)
T ss_pred CCcHHHHHHHHHHHHHhCCchhhcCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence 122234567899999999987776655 459999999999999999999999999999999999999999999999
Q ss_pred HHcCCEEEEEecCChhHHHhhhceEEEecCCeEeeecChhhH
Q 048028 158 AKSGSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNETPSNL 199 (592)
Q Consensus 158 a~~g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~~~~ 199 (592)
+++|+|+|+++|+++ ++.+.+|+++++ +|++++.|+++++
T Consensus 160 ~~~~~tvii~sH~~~-~~~~~~d~i~~l-~G~i~~~~~~~~~ 199 (223)
T TIGR03771 160 AGAGTAILMTTHDLA-QAMATCDRVVLL-NGRVIADGTPQQL 199 (223)
T ss_pred HHcCCEEEEEeCCHH-HHHHhCCEEEEE-CCEEEeecCHHHh
Confidence 878999999999997 688999999999 8999999998765
No 164
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=100.00 E-value=5.6e-37 Score=312.86 Aligned_cols=189 Identities=21% Similarity=0.385 Sum_probs=160.3
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCcc---cccceeEEEccCCC--CCCCCCHHHHHHHHHHccCC
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLESK---LLKIISAYVMQDDL--LFPMLTVEETLMFAAEFRLP 75 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~~---~~~~~~~yv~Q~~~--l~~~lTV~E~l~f~~~l~~~ 75 (592)
++|+|||||||||||++|+|+++|. +|+|.++|.++... ..++.++|++|++. +++.+||.|++.+....+.
T Consensus 42 ~~i~G~NGsGKSTLl~~l~Gl~~p~--~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~- 118 (267)
T PRK15112 42 LAIIGENGSGKSTLAKMLAGMIEPT--SGELLIDDHPLHFGDYSYRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNT- 118 (267)
T ss_pred EEEEcCCCCCHHHHHHHHhCCCCCC--CCEEEECCEECCCCchhhHhccEEEEecCchhhcCcchhHHHHHHHHHHhcc-
Confidence 5899999999999999999998754 59999999987531 22356899999974 6788999999988765431
Q ss_pred CCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHH
Q 048028 76 RSVTKTKKQERVEALINQLGLR-SAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVNVL 154 (592)
Q Consensus 76 ~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l 154 (592)
.....+..++++++++.+||. +..++. +..|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|
T Consensus 119 -~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l 192 (267)
T PRK15112 119 -DLEPEQREKQIIETLRQVGLLPDHASYY-----PHMLAPGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLM 192 (267)
T ss_pred -CCCHHHHHHHHHHHHHHcCCChHHHhcC-----chhcCHHHHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHH
Confidence 123444556789999999994 555544 3569999999999999999999999999999999999999999999
Q ss_pred HHHHHc-CCEEEEEecCChhHHHhhhceEEEecCCeEeeecChhhH
Q 048028 155 QRIAKS-GSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNETPSNL 199 (592)
Q Consensus 155 ~~la~~-g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~~~~ 199 (592)
++++++ |+|||+++|+++ ++.++||++++|++|+++..|+++++
T Consensus 193 ~~~~~~~g~tviivsH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~ 237 (267)
T PRK15112 193 LELQEKQGISYIYVTQHLG-MMKHISDQVLVMHQGEVVERGSTADV 237 (267)
T ss_pred HHHHHHcCcEEEEEeCCHH-HHHHhcCEEEEEECCEEEecCCHHHH
Confidence 999875 899999999997 68889999999999999999988765
No 165
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.5e-37 Score=311.23 Aligned_cols=193 Identities=24% Similarity=0.399 Sum_probs=159.5
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCC--C-CceeEEEECCEecCc-----ccccceeEEEccCCCCCCCCCHHHHHHHHHHc
Q 048028 1 MAILGASGAGKTTLMDALAGRIEK--E-SLQGAVTLNGEVLES-----KLLKIISAYVMQDDLLFPMLTVEETLMFAAEF 72 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~--~-~~~G~I~i~g~~~~~-----~~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l 72 (592)
++|+||||||||||+++|+|+.++ . +.+|+|.++|+++.. ...++.++|++|++.+++ .||+||+.+....
T Consensus 42 ~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~ 120 (260)
T PRK10744 42 TAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQDIALLRAKVGMVFQKPTPFP-MSIYDNIAFGVRL 120 (260)
T ss_pred EEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccccchHHHhcceEEEecCCccCc-CcHHHHHhhhHhh
Confidence 489999999999999999999862 1 357999999998742 234567999999998888 7999999887543
Q ss_pred cCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHH
Q 048028 73 RLPRSVTKTKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVN 152 (592)
Q Consensus 73 ~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~ 152 (592)
+. ..+.++.+++++++++.+++.+...... +..+..||||||||++||++|+.+|++|+|||||+|||+.++..+.+
T Consensus 121 ~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~ 197 (260)
T PRK10744 121 FE--KLSRAEMDERVEWALTKAALWNEVKDKL-HQSGYSLSGGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEE 197 (260)
T ss_pred cC--CCCHHHHHHHHHHHHHHcCCChhhHHHH-hcCCCCCCHHHHHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHH
Confidence 21 2334455577899999999853211111 23456799999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCEEEEEecCChhHHHhhhceEEEecCCeEeeecChhhH
Q 048028 153 VLQRIAKSGSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNETPSNL 199 (592)
Q Consensus 153 ~l~~la~~g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~~~~ 199 (592)
.|+++++ +.|||+++|+++ ++.+++|++++|++|+++..|+++++
T Consensus 198 ~L~~~~~-~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~ 242 (260)
T PRK10744 198 LITELKQ-DYTVVIVTHNMQ-QAARCSDYTAFMYLGELIEFGNTDTI 242 (260)
T ss_pred HHHHHhc-CCeEEEEeCCHH-HHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999964 789999999997 58889999999999999999998776
No 166
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.3e-37 Score=309.10 Aligned_cols=183 Identities=28% Similarity=0.436 Sum_probs=156.7
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCc---ccccceeEEEccCCCCCCCCCHHHHHHHHHHccCCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLES---KLLKIISAYVMQDDLLFPMLTVEETLMFAAEFRLPRS 77 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~---~~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~~~~ 77 (592)
++|+||||||||||+++|+|+.+|. +|+|.++|.++.. ...++.++|++|++.+++ .||+||+.+....+ .
T Consensus 32 ~~i~G~nGsGKSTLl~~l~Gl~~p~--~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~---~ 105 (241)
T PRK14250 32 YTIVGPSGAGKSTLIKLINRLIDPT--EGSILIDGVDIKTIDVIDLRRKIGMVFQQPHLFE-GTVKDNIEYGPMLK---G 105 (241)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCCC--CcEEEECCEEhhhcChHHhhhcEEEEecCchhch-hhHHHHHhcchhhc---C
Confidence 5899999999999999999998754 5999999998743 234567899999998887 59999998754321 1
Q ss_pred CCHHHHHHHHHHHHHHcCCc-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHH
Q 048028 78 VTKTKKQERVEALINQLGLR-SAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVNVLQR 156 (592)
Q Consensus 78 ~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~ 156 (592)
..+++++++++.+||+ +..++ .+..||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++
T Consensus 106 ----~~~~~~~~~l~~~~l~~~~~~~-----~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~ 176 (241)
T PRK14250 106 ----EKNVDVEYYLSIVGLNKEYATR-----DVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVK 176 (241)
T ss_pred ----cHHHHHHHHHHHcCCCHHHhhC-----CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 1235688999999996 44544 3456999999999999999999999999999999999999999999999
Q ss_pred HHHc-CCEEEEEecCChhHHHhhhceEEEecCCeEeeecChhhH
Q 048028 157 IAKS-GSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNETPSNL 199 (592)
Q Consensus 157 la~~-g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~~~~ 199 (592)
++++ |+|||+++|+++ ++.+++|++++|++|+++..|+++++
T Consensus 177 ~~~~~g~tii~~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~ 219 (241)
T PRK14250 177 LKNKMNLTVIWITHNME-QAKRIGDYTAFLNKGILVEYAKTYDF 219 (241)
T ss_pred HHHhCCCEEEEEeccHH-HHHHhCCEEEEEeCCEEEEeCCHHHH
Confidence 9874 899999999997 58889999999999999999988775
No 167
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.9e-37 Score=309.00 Aligned_cols=194 Identities=24% Similarity=0.406 Sum_probs=158.9
Q ss_pred CEEECCCCCcHHHHHHHHhCCCC--CC-CceeEEEECCEecCcc-----cccceeEEEccCCCCCCCCCHHHHHHHHHHc
Q 048028 1 MAILGASGAGKTTLMDALAGRIE--KE-SLQGAVTLNGEVLESK-----LLKIISAYVMQDDLLFPMLTVEETLMFAAEF 72 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~--~~-~~~G~I~i~g~~~~~~-----~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l 72 (592)
++|+||||||||||+++|+|+.+ +. +.+|+|.++|+++... ..++.++|++|++.+++. ||+||+.+....
T Consensus 34 ~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~~ni~~~~~~ 112 (251)
T PRK14244 34 TAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVLLRAKVGMVFQKPNPFPK-SIYDNVAYGPKL 112 (251)
T ss_pred EEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchHHHhhhEEEEecCcccccC-CHHHHHHHHHHh
Confidence 48999999999999999999975 21 3579999999986431 245678999999988886 999999887543
Q ss_pred cCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHH
Q 048028 73 RLPRSVTKTKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVN 152 (592)
Q Consensus 73 ~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~ 152 (592)
+. ......+.++.++++++.+||.+...+.+ +..++.||||||||++||++|+.+|++|+|||||+|||+.++..+.+
T Consensus 113 ~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~ 190 (251)
T PRK14244 113 HG-LAKNKKKLDEIVEKSLTSVGLWEELGDRL-KDSAFELSGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIEN 190 (251)
T ss_pred cC-CCCCHHHHHHHHHHHHHHcCCCchhhhHh-hcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHH
Confidence 21 11123344567889999999975322222 23456799999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCEEEEEecCChhHHHhhhceEEEecCCeEeeecChhhH
Q 048028 153 VLQRIAKSGSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNETPSNL 199 (592)
Q Consensus 153 ~l~~la~~g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~~~~ 199 (592)
.|++++ +|+|||+++|+++ ++.+++||+++|++|++++.|+++++
T Consensus 191 ~l~~~~-~~~tiiiisH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~ 235 (251)
T PRK14244 191 LIQELK-KNFTIIVVTHSMK-QAKKVSDRVAFFQSGRIVEYNTTQEI 235 (251)
T ss_pred HHHHHh-cCCeEEEEeCCHH-HHHhhcCEEEEEECCEEEEeCCHHHH
Confidence 999996 4899999999997 68889999999999999999988765
No 168
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1e-36 Score=310.99 Aligned_cols=194 Identities=24% Similarity=0.387 Sum_probs=159.8
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCC---CceeEEEECCEecCc-----ccccceeEEEccCCCCCCCCCHHHHHHHHHHc
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKE---SLQGAVTLNGEVLES-----KLLKIISAYVMQDDLLFPMLTVEETLMFAAEF 72 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~---~~~G~I~i~g~~~~~-----~~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l 72 (592)
++|+|||||||||||++|+|+.++. +.+|+|.++|+++.. ...++.++|++|++.+++. ||.||+.+....
T Consensus 48 ~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~ 126 (267)
T PRK14235 48 TAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLDVVELRARVGMVFQKPNPFPK-SIYENVAYGPRI 126 (267)
T ss_pred EEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccccchHHHhhceEEEecCCCCCCC-cHHHHHHHHHHh
Confidence 5899999999999999999998641 357999999998742 2345678999999988885 999999987643
Q ss_pred cCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHH
Q 048028 73 RLPRSVTKTKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVN 152 (592)
Q Consensus 73 ~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~ 152 (592)
+.. ..+..+.+++++++++.+|+.+...... +..++.||||||||++||++|+.+|++|+|||||+|||+.++..+.+
T Consensus 127 ~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~ 204 (267)
T PRK14235 127 HGL-ARSKAELDEIVETSLRKAGLWEEVKDRL-HEPGTGLSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEE 204 (267)
T ss_pred ccc-ccchHHHHHHHHHHHHHcCCchhhhHHh-hCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHH
Confidence 311 1123344567899999999964211111 23456799999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCEEEEEecCChhHHHhhhceEEEecCCeEeeecChhhH
Q 048028 153 VLQRIAKSGSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNETPSNL 199 (592)
Q Consensus 153 ~l~~la~~g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~~~~ 199 (592)
.|+++++ ++|||+++|+++ .+.+++|++++|++|+++..|+++++
T Consensus 205 ~L~~l~~-~~tiiivtH~~~-~~~~~~d~v~~l~~G~i~~~g~~~~~ 249 (267)
T PRK14235 205 LIDELRQ-NYTIVIVTHSMQ-QAARVSQRTAFFHLGNLVEVGDTEKM 249 (267)
T ss_pred HHHHHhc-CCeEEEEEcCHH-HHHhhCCEEEEEECCEEEEeCCHHHH
Confidence 9999975 689999999997 58889999999999999999988765
No 169
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-36 Score=307.58 Aligned_cols=194 Identities=21% Similarity=0.384 Sum_probs=160.3
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCC---CceeEEEECCEecCc-----ccccceeEEEccCCCCCCCCCHHHHHHHHHHc
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKE---SLQGAVTLNGEVLES-----KLLKIISAYVMQDDLLFPMLTVEETLMFAAEF 72 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~---~~~G~I~i~g~~~~~-----~~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l 72 (592)
++|+||||||||||+++|+|+.++. +.+|+|.++|.++.. ...++.++|++|++.+++ +||+||+.+....
T Consensus 32 ~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~ 110 (250)
T PRK14262 32 TAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVTEYRKKVGMVFQKPTPFP-MSIYDNVAFGPRI 110 (250)
T ss_pred EEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhHHHhhhhEEEEecCCccCc-ccHHHHHHHHHHH
Confidence 4899999999999999999997641 257999999998753 134567899999999888 8999999887543
Q ss_pred cCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHH
Q 048028 73 RLPRSVTKTKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVN 152 (592)
Q Consensus 73 ~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~ 152 (592)
.. ...+...++.++++++.+++.+..+.. .+..+++||||||||++||++|+.+|++|+|||||+|||+.++..+.+
T Consensus 111 ~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~~~~~LS~Gq~qr~~la~al~~~p~llllDEP~~~LD~~~~~~l~~ 187 (250)
T PRK14262 111 HG--VKSKHKLDRIVEESLKKAALWDEVKSE-LNKPGTRLSGGQQQRLCIARALAVEPEVILLDEPTSALDPIATQRIEK 187 (250)
T ss_pred cC--CCcHHHHHHHHHHHHHHcCCCchhHHH-HhCChhhcCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHH
Confidence 21 112334456688899999986432111 134566799999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCEEEEEecCChhHHHhhhceEEEecCCeEeeecChhhHH
Q 048028 153 VLQRIAKSGSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNETPSNLA 200 (592)
Q Consensus 153 ~l~~la~~g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~~~~~ 200 (592)
.|+++++ ++|+|+++|+++ ++.+++|++++|++|+++..|+++++.
T Consensus 188 ~l~~~~~-~~tili~sH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~ 233 (250)
T PRK14262 188 LLEELSE-NYTIVIVTHNIG-QAIRIADYIAFMYRGELIEYGPTREIV 233 (250)
T ss_pred HHHHHhc-CcEEEEEeCCHH-HHHHhCCEEEEEECCEEEEecCHHHHH
Confidence 9999975 789999999997 588999999999999999999988764
No 170
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.3e-36 Score=307.58 Aligned_cols=193 Identities=24% Similarity=0.379 Sum_probs=157.8
Q ss_pred CEEECCCCCcHHHHHHHHhCCCC--CC-CceeEEEECCEecCc-----ccccceeEEEccCCCCCCCCCHHHHHHHHHHc
Q 048028 1 MAILGASGAGKTTLMDALAGRIE--KE-SLQGAVTLNGEVLES-----KLLKIISAYVMQDDLLFPMLTVEETLMFAAEF 72 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~--~~-~~~G~I~i~g~~~~~-----~~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l 72 (592)
++|+||||||||||+++|+|+.+ |. +.+|+|.++|+++.. ...++.++|++|++.+++ +||+||+.+....
T Consensus 34 ~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~ 112 (252)
T PRK14239 34 TALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTVDLRKEIGMVFQQPNPFP-MSIYENVVYGLRL 112 (252)
T ss_pred EEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccchHhhhhcEEEEecCCccCc-CcHHHHHHHHHHH
Confidence 58999999999999999999854 31 147999999998742 134567899999998887 7999999887543
Q ss_pred cCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHH
Q 048028 73 RLPRSVTKTKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVN 152 (592)
Q Consensus 73 ~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~ 152 (592)
+. .......+++++++++.+++.+...+.. +..++.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+
T Consensus 113 ~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~ 189 (252)
T PRK14239 113 KG--IKDKQVLDEAVEKSLKGASIWDEVKDRL-HDSALGLSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEE 189 (252)
T ss_pred cC--CCcHHHHHHHHHHHHHHcCCchhHHHHH-hcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHH
Confidence 21 1122334567888999998853211111 33456799999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCEEEEEecCChhHHHhhhceEEEecCCeEeeecChhhH
Q 048028 153 VLQRIAKSGSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNETPSNL 199 (592)
Q Consensus 153 ~l~~la~~g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~~~~ 199 (592)
.|+++++ ++|||+++|+++ ++.+.|||+++|++|++++.|+++++
T Consensus 190 ~l~~~~~-~~tii~~sH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~ 234 (252)
T PRK14239 190 TLLGLKD-DYTMLLVTRSMQ-QASRISDRTGFFLDGDLIEYNDTKQM 234 (252)
T ss_pred HHHHHhh-CCeEEEEECCHH-HHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999965 689999999997 68899999999999999999998776
No 171
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=100.00 E-value=8.1e-37 Score=308.37 Aligned_cols=186 Identities=25% Similarity=0.394 Sum_probs=159.5
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCcc---cccceeEEEccCCCCCCCCCHHHHHHHHHHccCCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLESK---LLKIISAYVMQDDLLFPMLTVEETLMFAAEFRLPRS 77 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~~---~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~~~~ 77 (592)
++|+||||||||||+++|+|+.+ . +|+|.++|+++... ..++.++|++|++.+++.+||+||+.+.... .
T Consensus 25 ~~l~G~nGsGKSTLl~~l~Gl~~--~-~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~----~ 97 (248)
T PRK03695 25 LHLVGPNGAGKSTLLARMAGLLP--G-SGSIQFAGQPLEAWSAAELARHRAYLSQQQTPPFAMPVFQYLTLHQPD----K 97 (248)
T ss_pred EEEECCCCCCHHHHHHHHcCCCC--C-CeEEEECCEecCcCCHHHHhhheEEecccCccCCCccHHHHHHhcCcc----C
Confidence 48999999999999999999974 2 69999999987532 2345689999999888889999999876321 1
Q ss_pred CCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhh-------CCcEEEEeCCCCCCCHHHHHHH
Q 048028 78 VTKTKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIH-------DPILLFLDEPTSGLDSTSAFMV 150 (592)
Q Consensus 78 ~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~-------~p~lllLDEPtsgLD~~~~~~i 150 (592)
.+.++.+++++++++.+||.+..++.+ +.||||||||++||++|+. +|++|+|||||+|||+.++..+
T Consensus 98 ~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~la~al~~~~~~~~p~p~llllDEPt~~LD~~~~~~l 172 (248)
T PRK03695 98 TRTEAVASALNEVAEALGLDDKLGRSV-----NQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLDVAQQAAL 172 (248)
T ss_pred CCcHHHHHHHHHHHHHcCCHhHhcCCc-----ccCCHHHHHHHHHHHHHhccccccCCCCCEEEEcCCcccCCHHHHHHH
Confidence 223344677899999999987766554 4699999999999999997 6799999999999999999999
Q ss_pred HHHHHHHHHcCCEEEEEecCChhHHHhhhceEEEecCCeEeeecChhhH
Q 048028 151 VNVLQRIAKSGSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNETPSNL 199 (592)
Q Consensus 151 ~~~l~~la~~g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~~~~ 199 (592)
.+.|++++++|+|||+++|+++ ++.+++|++++|++|+++..|+.+++
T Consensus 173 ~~~L~~~~~~~~tvi~~sH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~ 220 (248)
T PRK03695 173 DRLLSELCQQGIAVVMSSHDLN-HTLRHADRVWLLKQGKLLASGRRDEV 220 (248)
T ss_pred HHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEECCEEEEECCHHHH
Confidence 9999999878999999999987 58899999999999999999988765
No 172
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.8e-36 Score=310.76 Aligned_cols=188 Identities=26% Similarity=0.398 Sum_probs=161.2
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCc---ccccceeEEEccCCC-CCCCCCHHHHHHHHHHccCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLES---KLLKIISAYVMQDDL-LFPMLTVEETLMFAAEFRLPR 76 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~---~~~~~~~~yv~Q~~~-l~~~lTV~E~l~f~~~l~~~~ 76 (592)
++|+|+||||||||+++|+|..++. +|+|.++|+++.. ...++.++|++|++. .++..||.||+.+.....
T Consensus 36 ~~I~G~nGsGKSTLl~~l~Gl~~~~--~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~--- 110 (277)
T PRK13642 36 VSIIGQNGSGKSTTARLIDGLFEEF--EGKVKIDGELLTAENVWNLRRKIGMVFQNPDNQFVGATVEDDVAFGMENQ--- 110 (277)
T ss_pred EEEECCCCCcHHHHHHHHhcCCCCC--CCEEEECCEECCcCCHHHHhcceEEEEECHHHhhccCCHHHHHHhhHHHc---
Confidence 5899999999999999999998754 5999999998753 234567899999974 677789999998765432
Q ss_pred CCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHH
Q 048028 77 SVTKTKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVNVLQR 156 (592)
Q Consensus 77 ~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~ 156 (592)
...+++..++++++++.+||.+..++.+ ..||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++
T Consensus 111 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~lAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~ 185 (277)
T PRK13642 111 GIPREEMIKRVDEALLAVNMLDFKTREP-----ARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHE 185 (277)
T ss_pred CCCHHHHHHHHHHHHHHCCCHhHhhCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 2334455577899999999987776554 56999999999999999999999999999999999999999999999
Q ss_pred HHHc-CCEEEEEecCChhHHHhhhceEEEecCCeEeeecChhhHH
Q 048028 157 IAKS-GSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNETPSNLA 200 (592)
Q Consensus 157 la~~-g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~~~~~ 200 (592)
++++ |+|||+++|+++ ++. .+|++++|++|+++..|+++++.
T Consensus 186 l~~~~g~tiil~sH~~~-~~~-~~d~i~~l~~G~i~~~g~~~~~~ 228 (277)
T PRK13642 186 IKEKYQLTVLSITHDLD-EAA-SSDRILVMKAGEIIKEAAPSELF 228 (277)
T ss_pred HHHhcCCEEEEEeCCHH-HHH-hCCEEEEEECCEEEEeCCHHHHh
Confidence 9875 999999999997 454 69999999999999999988763
No 173
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=100.00 E-value=5.9e-37 Score=339.56 Aligned_cols=191 Identities=24% Similarity=0.415 Sum_probs=163.6
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCcc----cccceeEEEccCCCCCCCCCHHHHHHHHHHccCC-
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLESK----LLKIISAYVMQDDLLFPMLTVEETLMFAAEFRLP- 75 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~~----~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~~- 75 (592)
++|+||||||||||||+|+|+++|. +|+|.++|+++... ..++.++|++|++.+++.+||+||+.++...+..
T Consensus 33 ~~l~G~NGsGKSTLl~~l~G~~~p~--~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~ 110 (501)
T PRK10762 33 MALVGENGAGKSTMMKVLTGIYTRD--AGSILYLGKEVTFNGPKSSQEAGIGIIHQELNLIPQLTIAENIFLGREFVNRF 110 (501)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCCC--CcEEEECCEECCCCCHHHHHhCCEEEEEcchhccCCCcHHHHhhhcccccccc
Confidence 5899999999999999999998754 59999999987432 1245689999999999999999999886533211
Q ss_pred CCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHH
Q 048028 76 RSVTKTKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVNVLQ 155 (592)
Q Consensus 76 ~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~ 155 (592)
...+..+.+++++++++.+||.+..|..++ .|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|+
T Consensus 111 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~ 185 (501)
T PRK10762 111 GRIDWKKMYAEADKLLARLNLRFSSDKLVG-----ELSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIR 185 (501)
T ss_pred CccCHHHHHHHHHHHHHHcCCCCCccCchh-----hCCHHHHHHHHHHHHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHH
Confidence 112334455678999999999887776655 599999999999999999999999999999999999999999999
Q ss_pred HHHHcCCEEEEEecCChhHHHhhhceEEEecCCeEeeecChhhH
Q 048028 156 RIAKSGSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNETPSNL 199 (592)
Q Consensus 156 ~la~~g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~~~~ 199 (592)
+++++|+|||+++|+++ ++.++||++++|++|+++..|+++++
T Consensus 186 ~l~~~~~tvii~sHd~~-~~~~~~d~i~~l~~G~i~~~~~~~~~ 228 (501)
T PRK10762 186 ELKSQGRGIVYISHRLK-EIFEICDDVTVFRDGQFIAEREVADL 228 (501)
T ss_pred HHHHCCCEEEEEeCCHH-HHHHhCCEEEEEeCCEEEEecCcCcC
Confidence 99888999999999997 68899999999999999999987754
No 174
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.5e-36 Score=307.05 Aligned_cols=193 Identities=21% Similarity=0.351 Sum_probs=159.3
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCC---CceeEEEECCEecCc-----ccccceeEEEccCCCCCCCCCHHHHHHHHHHc
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKE---SLQGAVTLNGEVLES-----KLLKIISAYVMQDDLLFPMLTVEETLMFAAEF 72 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~---~~~G~I~i~g~~~~~-----~~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l 72 (592)
++|+||||||||||+++|+|+.++. +.+|+|.++|+++.. ...++.++|++|++.+++ +|++||+.+....
T Consensus 33 ~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~ 111 (251)
T PRK14270 33 TALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVVELRKRVGMVFQKPNPFP-MSIYDNVAYGPRI 111 (251)
T ss_pred EEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccHHHHHhheEEEecCCCcCC-CcHHHHHHhHHHh
Confidence 5899999999999999999997642 257999999998743 123566899999999888 8999999987543
Q ss_pred cCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHH
Q 048028 73 RLPRSVTKTKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVN 152 (592)
Q Consensus 73 ~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~ 152 (592)
.. .....+.+++++++++.+++.+...... +..++.||||||||++||++|+.+|++++|||||+|||+.++..+.+
T Consensus 112 ~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~ 188 (251)
T PRK14270 112 HG--IKDKKELDKIVEWALKKAALWDEVKDDL-KKSALKLSGGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIED 188 (251)
T ss_pred cC--CCcHHHHHHHHHHHHHHcCCchhhhhHh-hCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHH
Confidence 21 1123445567889999998853111111 23456799999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCEEEEEecCChhHHHhhhceEEEecCCeEeeecChhhH
Q 048028 153 VLQRIAKSGSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNETPSNL 199 (592)
Q Consensus 153 ~l~~la~~g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~~~~ 199 (592)
.|+++++ ++|||+++|+++ ++.++|||+++|++|++++.|+++++
T Consensus 189 ~L~~~~~-~~tiiivsH~~~-~~~~~~d~v~~l~~G~i~~~~~~~~~ 233 (251)
T PRK14270 189 LMVELKK-EYTIVIVTHNMQ-QASRVSDYTAFFLMGDLIEFNKTEKI 233 (251)
T ss_pred HHHHHHh-CCeEEEEEcCHH-HHHHhcCEEEEEECCeEEEeCCHHHH
Confidence 9999976 589999999997 68899999999999999999998876
No 175
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.8e-36 Score=309.09 Aligned_cols=193 Identities=23% Similarity=0.326 Sum_probs=160.8
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCC---CceeEEEECCEecCc-----ccccceeEEEccCCCCCCCCCHHHHHHHHHHc
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKE---SLQGAVTLNGEVLES-----KLLKIISAYVMQDDLLFPMLTVEETLMFAAEF 72 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~---~~~G~I~i~g~~~~~-----~~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l 72 (592)
++|+|||||||||||++|+|+.++. +.+|+|.++|+++.. ...++.++|++|++.+++ .||+||+.+....
T Consensus 49 ~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~ 127 (267)
T PRK14237 49 TALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEINVYEMRKHIGMVFQRPNPFA-KSIYENITFALER 127 (267)
T ss_pred EEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccCChHHHhcceEEEecCCcccc-ccHHHHHHhHHHh
Confidence 5899999999999999999998642 457999999998742 123567899999998887 5999999887543
Q ss_pred cCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHH
Q 048028 73 RLPRSVTKTKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVN 152 (592)
Q Consensus 73 ~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~ 152 (592)
. ....+.+.++++.++++.++|.+..+... +..++.||||||||++|||+|+.+|++|+|||||+|||+.++..+.+
T Consensus 128 ~--~~~~~~~~~~~~~~~l~~~~l~~~i~~~~-~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~ 204 (267)
T PRK14237 128 A--GVKDKKVLDEIVETSLKQAALWDQVKDDL-HKSALTLSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEE 204 (267)
T ss_pred c--CCCCHHHHHHHHHHHHHHcCCCchhhhhh-cCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHH
Confidence 2 11234445677889999999964322222 34567899999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCEEEEEecCChhHHHhhhceEEEecCCeEeeecChhhH
Q 048028 153 VLQRIAKSGSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNETPSNL 199 (592)
Q Consensus 153 ~l~~la~~g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~~~~ 199 (592)
.|+++++ +.|||+++|+++ ++.++||++++|++|+++..|+++++
T Consensus 205 ~l~~~~~-~~tiii~tH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~ 249 (267)
T PRK14237 205 TMFELKK-NYTIIIVTHNMQ-QAARASDYTAFFYLGDLIEYDKTRNI 249 (267)
T ss_pred HHHHHhc-CCEEEEEecCHH-HHHHhcCEEEEEECCEEEEeCCHHHH
Confidence 9999964 789999999997 68899999999999999999998776
No 176
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.4e-36 Score=308.53 Aligned_cols=193 Identities=24% Similarity=0.387 Sum_probs=159.3
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCC--C-CceeEEEECCEecCc-----ccccceeEEEccCCCCCCCCCHHHHHHHHHHc
Q 048028 1 MAILGASGAGKTTLMDALAGRIEK--E-SLQGAVTLNGEVLES-----KLLKIISAYVMQDDLLFPMLTVEETLMFAAEF 72 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~--~-~~~G~I~i~g~~~~~-----~~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l 72 (592)
++|+||||||||||+++|+|+.++ . +.+|+|.++|+++.. ...++.++|++|++.+++. ||+||+.+....
T Consensus 41 ~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~ 119 (259)
T PRK14274 41 TAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDLVELRKNIGMVFQKGNPFPQ-SIFDNVAYGPRI 119 (259)
T ss_pred EEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCHHHHhhceEEEecCCccccc-CHHHHHHhHHHh
Confidence 589999999999999999999863 1 147999999998742 2345678999999988886 999999886543
Q ss_pred cCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHH
Q 048028 73 RLPRSVTKTKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVN 152 (592)
Q Consensus 73 ~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~ 152 (592)
+. ...+++.+++++++++.+++.+...... +..+++||||||||++||++|+.+|++++|||||+|||+.++..+.+
T Consensus 120 ~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~l-~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~ 196 (259)
T PRK14274 120 HG--TKNKKKLQEIVEKSLKDVALWDEVKDRL-HTQALSLSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEE 196 (259)
T ss_pred cC--CCCHHHHHHHHHHHHHHcCCchhhhhhh-hCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHH
Confidence 21 1123445567889999999864211111 23456799999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCEEEEEecCChhHHHhhhceEEEecCCeEeeecChhhH
Q 048028 153 VLQRIAKSGSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNETPSNL 199 (592)
Q Consensus 153 ~l~~la~~g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~~~~ 199 (592)
.|+++++ ++|+|+++|+++ ++.+++||+++|++|+++..|+++++
T Consensus 197 ~l~~~~~-~~tiiivtH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~ 241 (259)
T PRK14274 197 LILKLKE-KYTIVIVTHNMQ-QAARVSDQTAFFYMGELVECNDTNKM 241 (259)
T ss_pred HHHHHhc-CCEEEEEEcCHH-HHHHhCCEEEEEECCEEEEECCHHHH
Confidence 9999965 789999999997 68899999999999999999998876
No 177
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.5e-36 Score=306.47 Aligned_cols=193 Identities=24% Similarity=0.397 Sum_probs=158.7
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCC---CceeEEEECCEecCc----ccccceeEEEccCCCCCCCCCHHHHHHHHHHcc
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKE---SLQGAVTLNGEVLES----KLLKIISAYVMQDDLLFPMLTVEETLMFAAEFR 73 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~---~~~G~I~i~g~~~~~----~~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~ 73 (592)
++|+||||||||||+++|+|+.++. +.+|+|.++|.++.. ...++.++|++|++.+++ .||.||+.+.....
T Consensus 32 ~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~~l~~~~~~~ 110 (249)
T PRK14253 32 TALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVADLRIKVGMVFQKPNPFP-MSIYENVAYGLRAQ 110 (249)
T ss_pred EEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchHHHHhheeEEecCCCcCc-ccHHHHHHhHHHhc
Confidence 4899999999999999999998753 357999999988742 234567899999999887 79999998865432
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHH
Q 048028 74 LPRSVTKTKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVNV 153 (592)
Q Consensus 74 ~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~ 153 (592)
. ...+...+++++++++.+++.+...... +..+.+|||||||||+||++|+.+|++++|||||+|||+.++..+.+.
T Consensus 111 ~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~ 187 (249)
T PRK14253 111 G--IKDKKVLDEVVERSLRGAALWDEVKDRL-KSHAFGLSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEEL 187 (249)
T ss_pred C--CCchHHHHHHHHHHHHHcCCchhhhHHh-hcCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHH
Confidence 1 1123344567888899998854221111 334567999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCEEEEEecCChhHHHhhhceEEEecCCeEeeecChhhH
Q 048028 154 LQRIAKSGSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNETPSNL 199 (592)
Q Consensus 154 l~~la~~g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~~~~ 199 (592)
|+++++ ++|||+++|++. ++.+.|||+++|++|+++..|+++++
T Consensus 188 l~~~~~-~~tii~~sh~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~ 231 (249)
T PRK14253 188 MEELKK-NYTIVIVTHSMQ-QARRISDRTAFFLMGELVEHDDTQVI 231 (249)
T ss_pred HHHHhc-CCeEEEEecCHH-HHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 999976 589999999997 68899999999999999999988765
No 178
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=7.1e-37 Score=308.26 Aligned_cols=194 Identities=26% Similarity=0.429 Sum_probs=167.1
Q ss_pred CEEECCCCCcHHHHHHHHhCCCC-C-C-CceeEEEECCEecCc---cc----ccceeEEEccCC--CCCCCCCHHHHHHH
Q 048028 1 MAILGASGAGKTTLMDALAGRIE-K-E-SLQGAVTLNGEVLES---KL----LKIISAYVMQDD--LLFPMLTVEETLMF 68 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~-~-~-~~~G~I~i~g~~~~~---~~----~~~~~~yv~Q~~--~l~~~lTV~E~l~f 68 (592)
+||+|.|||||||+.++|.|+++ + . ..+|+|.++|+++.. +. ..+.++|++|++ .|.|.+||.+.+.-
T Consensus 34 lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E 113 (316)
T COG0444 34 LGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAE 113 (316)
T ss_pred EEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHHHHhhcCceEEEEEcCchhhcCChhhHHHHHHH
Confidence 58999999999999999999997 3 2 357999999997642 21 234689999996 69999999999877
Q ss_pred HHHccCCCCC-CHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHH
Q 048028 69 AAEFRLPRSV-TKTKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSA 147 (592)
Q Consensus 69 ~~~l~~~~~~-~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~ 147 (592)
..+... .. ++++.++++.++|+.+||.+... +-+.++.+|||||||||.||.||+.+|++|+.||||++||...+
T Consensus 114 ~l~~h~--~~~~~~ea~~~a~~~L~~Vgi~~~~~--~~~~YPhelSGGMrQRV~IAmala~~P~LlIADEPTTALDvt~Q 189 (316)
T COG0444 114 VLRLHG--KGLSKKEAKERAIELLELVGIPDPER--RLKSYPHELSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQ 189 (316)
T ss_pred HHHHhh--cchhhHHHHHHHHHHHHHcCCCCHHH--HHhhCCcccCCcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHH
Confidence 665432 22 45667889999999999986432 23678899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH-cCCEEEEEecCChhHHHhhhceEEEecCCeEeeecChhhH
Q 048028 148 FMVVNVLQRIAK-SGSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNETPSNL 199 (592)
Q Consensus 148 ~~i~~~l~~la~-~g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~~~~ 199 (592)
.+|+++|+++.+ .|.++|++|||+. -+.++||||.+|+.|++|+.|+++++
T Consensus 190 aqIl~Ll~~l~~e~~~aiilITHDl~-vva~~aDri~VMYaG~iVE~g~~~~i 241 (316)
T COG0444 190 AQILDLLKELQREKGTALILITHDLG-VVAEIADRVAVMYAGRIVEEGPVEEI 241 (316)
T ss_pred HHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcceEEEEECcEEEEeCCHHHH
Confidence 999999999997 5999999999998 58999999999999999999999876
No 179
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.2e-36 Score=305.83 Aligned_cols=194 Identities=23% Similarity=0.357 Sum_probs=158.6
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCC---ceeEEEECCEecCc-----ccccceeEEEccCCCCCCCCCHHHHHHHHHHc
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKES---LQGAVTLNGEVLES-----KLLKIISAYVMQDDLLFPMLTVEETLMFAAEF 72 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~---~~G~I~i~g~~~~~-----~~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l 72 (592)
++|+||||||||||+|+|+|+.++.+ .+|+|.++|+++.. ...++.++|++|++.+++.+|+.||+.+....
T Consensus 33 ~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~ 112 (252)
T PRK14272 33 NALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPVAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKL 112 (252)
T ss_pred EEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCHHHhhceeEEEeccCccCcCCCHHHHHHHHHHh
Confidence 48999999999999999999987532 37999999998742 13456789999999999999999999876543
Q ss_pred cCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHH
Q 048028 73 RLPRSVTKTKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVN 152 (592)
Q Consensus 73 ~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~ 152 (592)
.. ...+++..++++++++.+++.+...... +..++.||||||||++||++|+.+|++|+|||||+|||+.++..+.+
T Consensus 113 ~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~-~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~ 189 (252)
T PRK14272 113 AG--IRDRDHLMEVAERSLRGAALWDEVKDRL-KTPATGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIED 189 (252)
T ss_pred cC--CCCHHHHHHHHHHHHHHcCcchhhhhhh-cCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHH
Confidence 21 1123334566778888887642111111 23456799999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCEEEEEecCChhHHHhhhceEEEecCCeEeeecChhhH
Q 048028 153 VLQRIAKSGSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNETPSNL 199 (592)
Q Consensus 153 ~l~~la~~g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~~~~ 199 (592)
.|+++++ ++|+|+++|+++ ++.+.|||+++|++|++++.|+++++
T Consensus 190 ~l~~~~~-~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~ 234 (252)
T PRK14272 190 LMTDLKK-VTTIIIVTHNMH-QAARVSDTTSFFLVGDLVEHGPTDQL 234 (252)
T ss_pred HHHHHhc-CCeEEEEeCCHH-HHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999964 799999999997 68889999999999999999998776
No 180
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=1e-36 Score=311.32 Aligned_cols=193 Identities=27% Similarity=0.396 Sum_probs=159.5
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCC------ceeEEEECCEecCc---ccccceeEEEccCCCCCCCCCHHHHHHHHHH
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKES------LQGAVTLNGEVLES---KLLKIISAYVMQDDLLFPMLTVEETLMFAAE 71 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~------~~G~I~i~g~~~~~---~~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~ 71 (592)
++|+||||||||||||+|+|++++.. .+|+|.++|+++.. ...++.++|++|++.+++.+||+||+.+...
T Consensus 30 ~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~ 109 (272)
T PRK13547 30 TALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDAPRLARLRAVLPQAAQPAFAFSAREIVLLGRY 109 (272)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCHHHHHhhcEEecccCCCCCCCcHHHHHhhccc
Confidence 58999999999999999999987541 26999999998743 2345568999999876667899999987532
Q ss_pred ccCC-CCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHh---------hCCcEEEEeCCCCC
Q 048028 72 FRLP-RSVTKTKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHII---------HDPILLFLDEPTSG 141 (592)
Q Consensus 72 l~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~---------~~p~lllLDEPtsg 141 (592)
.... ......+.+++++++++.+|+.+..++.+ ..|||||||||+||++|+ .+|++|+|||||+|
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~laral~~~~~~~~~~~~p~lllLDEPt~~ 184 (272)
T PRK13547 110 PHARRAGALTHRDGEIAWQALALAGATALVGRDV-----TTLSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAA 184 (272)
T ss_pred ccccccccCCHHHHHHHHHHHHHcCcHhhhcCCc-----ccCCHHHHHHHHHHHHHhccccccccCCCCCEEEEcCcccc
Confidence 1100 01111334567889999999987665544 569999999999999999 59999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHc-CCEEEEEecCChhHHHhhhceEEEecCCeEeeecChhhH
Q 048028 142 LDSTSAFMVVNVLQRIAKS-GSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNETPSNL 199 (592)
Q Consensus 142 LD~~~~~~i~~~l~~la~~-g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~~~~ 199 (592)
||+.++..+.+.|++++++ |+|||+++|+++ ++.++||++++|++|+++..|+++++
T Consensus 185 LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~ 242 (272)
T PRK13547 185 LDLAHQHRLLDTVRRLARDWNLGVLAIVHDPN-LAARHADRIAMLADGAIVAHGAPADV 242 (272)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEEEEECCeEEEecCHHHH
Confidence 9999999999999999876 899999999997 58889999999999999999988765
No 181
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=5.2e-37 Score=280.04 Aligned_cols=180 Identities=31% Similarity=0.467 Sum_probs=158.8
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCcc-------cccceeEEEccCCCCCCCCCHHHHHHHHHHcc
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLESK-------LLKIISAYVMQDDLLFPMLTVEETLMFAAEFR 73 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~~-------~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~ 73 (592)
+||+|||||||||||-+++|+..+ .+|+|.+.|+++.+. ...+.+|+|+|...+.|+||..||+...+.++
T Consensus 39 vaiVG~SGSGKSTLl~vlAGLd~~--ssGeV~l~G~~L~~ldEd~rA~~R~~~vGfVFQSF~Lip~ltAlENV~lPleL~ 116 (228)
T COG4181 39 VAIVGPSGSGKSTLLAVLAGLDDP--SSGEVRLLGQPLHKLDEDARAALRARHVGFVFQSFHLIPNLTALENVALPLELR 116 (228)
T ss_pred EEEEcCCCCcHHhHHHHHhcCCCC--CCceEEEcCcchhhcCHHHHHHhhccceeEEEEeeeccccchhhhhccchhhhc
Confidence 589999999999999999999775 469999999988541 23467899999999999999999999998886
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHH
Q 048028 74 LPRSVTKTKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVNV 153 (592)
Q Consensus 74 ~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~ 153 (592)
. .+..+..+...++|+.+||.+..+. ++++|||||+|||+||||++..|+|||.||||-+||..+..+|.++
T Consensus 117 g---e~~~~~~~~A~~lL~~vGLg~Rl~H-----yP~qLSGGEQQRVAiARAfa~~P~vLfADEPTGNLD~~Tg~~iaDL 188 (228)
T COG4181 117 G---ESSADSRAGAKALLEAVGLGKRLTH-----YPAQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADL 188 (228)
T ss_pred C---CccccHHHHHHHHHHHhCccccccc-----CccccCchHHHHHHHHHHhcCCCCEEeccCCCCCcchhHHHHHHHH
Confidence 3 2344556778899999999987754 4567999999999999999999999999999999999999999999
Q ss_pred HHHHHHc-CCEEEEEecCChhHHHhhhceEEEecCCeEee
Q 048028 154 LQRIAKS-GSIVIMSIHQPSYRILSLLDRLIILSHGQSVY 192 (592)
Q Consensus 154 l~~la~~-g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~ 192 (592)
|-.+.++ |.|.|++||||. +...|||.+-|.+|+++.
T Consensus 189 lF~lnre~G~TlVlVTHD~~--LA~Rc~R~~r~~~G~l~~ 226 (228)
T COG4181 189 LFALNRERGTTLVLVTHDPQ--LAARCDRQLRLRSGRLVE 226 (228)
T ss_pred HHHHhhhcCceEEEEeCCHH--HHHhhhheeeeecceecc
Confidence 9999764 999999999996 678899999999999874
No 182
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.7e-36 Score=304.92 Aligned_cols=193 Identities=24% Similarity=0.402 Sum_probs=158.5
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCC---CceeEEEECCEecCc-----ccccceeEEEccCCCCCCCCCHHHHHHHHHHc
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKE---SLQGAVTLNGEVLES-----KLLKIISAYVMQDDLLFPMLTVEETLMFAAEF 72 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~---~~~G~I~i~g~~~~~-----~~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l 72 (592)
++|+||||||||||+++|+|+.++. +.+|+|.++|+++.. ...++.++|++|++.+++ +|++||+.+....
T Consensus 32 ~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~t~~~ni~~~~~~ 110 (250)
T PRK14240 32 TALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDVNQLRKRVGMVFQQPNPFP-MSIYDNVAYGPRT 110 (250)
T ss_pred EEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHHHhccEEEEecCCccCc-ccHHHHHHHHHHh
Confidence 4899999999999999999987531 247999999998753 134567899999998888 8999999987543
Q ss_pred cCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHH
Q 048028 73 RLPRSVTKTKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVN 152 (592)
Q Consensus 73 ~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~ 152 (592)
+. ..+.++.+++++++++.+++.+...... +..++.||||||||++|||+|+.+|++|+|||||+|||+.++..+.+
T Consensus 111 ~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~-~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~ 187 (250)
T PRK14240 111 HG--IKDKKKLDEIVEKSLKGAALWDEVKDRL-KKSALGLSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEE 187 (250)
T ss_pred cC--CCCHHHHHHHHHHHHHHcCCchhhHHHH-hcCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHH
Confidence 21 1123445677888999998753211111 23456799999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCEEEEEecCChhHHHhhhceEEEecCCeEeeecChhhH
Q 048028 153 VLQRIAKSGSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNETPSNL 199 (592)
Q Consensus 153 ~l~~la~~g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~~~~ 199 (592)
.|+++++ ++|||+++|+++ ++.+.+||+++|++|+++..|+++++
T Consensus 188 ~l~~~~~-~~tiii~sH~~~-~~~~~~d~v~~l~~G~i~~~~~~~~~ 232 (250)
T PRK14240 188 LIQELKK-DYTIVIVTHNMQ-QASRISDKTAFFLNGEIVEFGDTVDL 232 (250)
T ss_pred HHHHHhc-CCeEEEEEeCHH-HHHhhCCEEEEEECCEEEEeCCHHHH
Confidence 9999964 789999999987 68899999999999999999988765
No 183
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1e-36 Score=338.48 Aligned_cols=191 Identities=23% Similarity=0.362 Sum_probs=162.8
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCccc----ccceeEEEccCCCCCCCCCHHHHHHHHHHccC-C
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLESKL----LKIISAYVMQDDLLFPMLTVEETLMFAAEFRL-P 75 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~~~----~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~-~ 75 (592)
++|+||||||||||||+|+|+.+|. +|+|.++|+++.... .++.++||+|++.+++.+||+||+.++..... .
T Consensus 34 ~~liG~nGsGKSTLl~~i~Gl~~p~--~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~ 111 (510)
T PRK09700 34 HALLGENGAGKSTLMKVLSGIHEPT--KGTITINNINYNKLDHKLAAQLGIGIIYQELSVIDELTVLENLYIGRHLTKKV 111 (510)
T ss_pred EEEECCCCCCHHHHHHHHcCCcCCC--ccEEEECCEECCCCCHHHHHHCCeEEEeecccccCCCcHHHHhhhcccccccc
Confidence 5899999999999999999998754 599999999875321 23468999999999999999999987542110 0
Q ss_pred CC---CCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHH
Q 048028 76 RS---VTKTKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVN 152 (592)
Q Consensus 76 ~~---~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~ 152 (592)
.. .+..+.+++++++++.+||.+..++.++ +|||||||||+||++|+.+|++|||||||+|||+.++..+.+
T Consensus 112 ~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~-----~LSgG~~qrv~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~ 186 (510)
T PRK09700 112 CGVNIIDWREMRVRAAMMLLRVGLKVDLDEKVA-----NLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFL 186 (510)
T ss_pred ccccccCHHHHHHHHHHHHHHcCCCCCcccchh-----hCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHH
Confidence 01 1234455778999999999887776654 599999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCEEEEEecCChhHHHhhhceEEEecCCeEeeecChhhH
Q 048028 153 VLQRIAKSGSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNETPSNL 199 (592)
Q Consensus 153 ~l~~la~~g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~~~~ 199 (592)
.|++++++|+|||+++|+++ ++.++||++++|++|++++.|+++++
T Consensus 187 ~l~~l~~~g~tiiivsHd~~-~~~~~~d~v~~l~~G~i~~~g~~~~~ 232 (510)
T PRK09700 187 IMNQLRKEGTAIVYISHKLA-EIRRICDRYTVMKDGSSVCSGMVSDV 232 (510)
T ss_pred HHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEeeecchhhC
Confidence 99999888999999999987 68889999999999999999988764
No 184
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=100.00 E-value=1.8e-36 Score=297.02 Aligned_cols=173 Identities=32% Similarity=0.506 Sum_probs=148.4
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCc---c----cccceeEEEccCCCCCCCCCHHHHHHHHHHcc
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLES---K----LLKIISAYVMQDDLLFPMLTVEETLMFAAEFR 73 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~---~----~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~ 73 (592)
++|+||||||||||+++|+|++++ .+|+|.++|+++.. . ..++.++|++|++.+++.+|++||+.+.....
T Consensus 27 ~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~~~~~~~~~ 104 (206)
T TIGR03608 27 YAIIGESGSGKSTLLNIIGLLEKF--DSGQVYLNGKETPPLNSKKASKFRREKLGYLFQNFALIENETVEENLDLGLKYK 104 (206)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCC--CCeEEEECCEEccccchhhHHHHHHhCeeEEecchhhccCCcHHHHHHHHHHhc
Confidence 489999999999999999999875 45999999998531 1 23567899999999999999999999875432
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHH
Q 048028 74 LPRSVTKTKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVNV 153 (592)
Q Consensus 74 ~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~ 153 (592)
...+.+..++++++++.+|+++..++.+ +.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.
T Consensus 105 ---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~lS~G~~qr~~laral~~~p~llllDEPt~~LD~~~~~~l~~~ 176 (206)
T TIGR03608 105 ---KLSKKEKREKKKEALEKVGLNLKLKQKI-----YELSGGEQQRVALARAILKDPPLILADEPTGSLDPKNRDEVLDL 176 (206)
T ss_pred ---CCCHHHHHHHHHHHHHHcCchhhhcCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEeCCcCCCCHHHHHHHHHH
Confidence 2334455678899999999987776655 46999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCEEEEEecCChhHHHhhhceEEEe
Q 048028 154 LQRIAKSGSIVIMSIHQPSYRILSLLDRLIIL 185 (592)
Q Consensus 154 l~~la~~g~tvi~~~H~~~~~i~~~~D~v~ll 185 (592)
|++++++|.|+|+++|++. ..+.+|++++|
T Consensus 177 l~~~~~~~~tii~~sh~~~--~~~~~d~i~~l 206 (206)
T TIGR03608 177 LLELNDEGKTIIIVTHDPE--VAKQADRVIEL 206 (206)
T ss_pred HHHHHhcCCEEEEEeCCHH--HHhhcCEEEeC
Confidence 9999877999999999986 34689999875
No 185
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.7e-36 Score=304.07 Aligned_cols=193 Identities=25% Similarity=0.364 Sum_probs=158.8
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCC---CceeEEEECCEecCc-----ccccceeEEEccCCCCCCCCCHHHHHHHHHHc
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKE---SLQGAVTLNGEVLES-----KLLKIISAYVMQDDLLFPMLTVEETLMFAAEF 72 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~---~~~G~I~i~g~~~~~-----~~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l 72 (592)
++|+||||||||||+++|+|+.++. +.+|+|.++|+++.. ...++.++|++|++.+++. |++||+.+....
T Consensus 33 ~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~ 111 (251)
T PRK14249 33 TAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDVVNLRKRVGMVFQQPNPFPK-SIFDNVAFGPRM 111 (251)
T ss_pred EEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccChHHhhceEEEEecCCccCcC-cHHHHHhhHHHh
Confidence 4899999999999999999998753 136999999998742 1346679999999998885 999999987643
Q ss_pred cCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHH
Q 048028 73 RLPRSVTKTKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVN 152 (592)
Q Consensus 73 ~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~ 152 (592)
+.. ..+++.+++++++++.+++.+...... +..+..|||||||||+|||+|+.+|++++|||||+|||+.++..+.+
T Consensus 112 ~~~--~~~~~~~~~~~~~l~~~~l~~~l~~~~-~~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~ 188 (251)
T PRK14249 112 LGT--TAQSRLDEVVEKSLRQAALWDEVKDNL-HKSGLALSGGQQQRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEE 188 (251)
T ss_pred cCC--ChhhHHHHHHHHHHHHhCCchhhhhHh-hCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHH
Confidence 311 112233466788888888754222211 34566799999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCEEEEEecCChhHHHhhhceEEEecCCeEeeecChhhH
Q 048028 153 VLQRIAKSGSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNETPSNL 199 (592)
Q Consensus 153 ~l~~la~~g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~~~~ 199 (592)
.|+++. +++|||+++|+++ ++.+.+|++++|++|++++.|+++++
T Consensus 189 ~l~~~~-~~~tilivsh~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~ 233 (251)
T PRK14249 189 LMQELK-QNYTIAIVTHNMQ-QAARASDWTGFLLTGDLVEYGRTGEI 233 (251)
T ss_pred HHHHHh-cCCEEEEEeCCHH-HHHhhCCEEEEEeCCeEEEeCCHHHH
Confidence 999995 5899999999997 58889999999999999999998776
No 186
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.5e-36 Score=308.27 Aligned_cols=194 Identities=23% Similarity=0.377 Sum_probs=161.4
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCC---CceeEEEECCEecCc----ccccceeEEEccCCCCCCCCCHHHHHHHHHHcc
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKE---SLQGAVTLNGEVLES----KLLKIISAYVMQDDLLFPMLTVEETLMFAAEFR 73 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~---~~~G~I~i~g~~~~~----~~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~ 73 (592)
++|+||||||||||+++|+|+.++. +.+|+|.++|.++.. ...++.++|++|++.+++ .||+||+.+.....
T Consensus 50 ~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~l~~-~tv~eni~~~~~~~ 128 (276)
T PRK14271 50 TSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVLEFRRRVGMLFQRPNPFP-MSIMDNVLAGVRAH 128 (276)
T ss_pred EEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhHHHhhheEEeccCCccCC-ccHHHHHHHHHHhc
Confidence 5899999999999999999998752 357999999998743 234567899999998888 79999998765322
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHH
Q 048028 74 LPRSVTKTKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVNV 153 (592)
Q Consensus 74 ~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~ 153 (592)
...+..+.++++.++++.+++.+..++.. +..++.||||||||++|||+|+.+|++++|||||+|||+.++..+.+.
T Consensus 129 --~~~~~~~~~~~~~~~l~~~~l~~~~~~~l-~~~~~~LSgGq~qrl~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~ 205 (276)
T PRK14271 129 --KLVPRKEFRGVAQARLTEVGLWDAVKDRL-SDSPFRLSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEF 205 (276)
T ss_pred --cCCCHHHHHHHHHHHHHHcCCCchhhhHh-hCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHH
Confidence 11234445566788999999975432222 234567999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCEEEEEecCChhHHHhhhceEEEecCCeEeeecChhhHH
Q 048028 154 LQRIAKSGSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNETPSNLA 200 (592)
Q Consensus 154 l~~la~~g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~~~~~ 200 (592)
|+++++ ++|||+++|+++ ++.+++||+++|++|+++..|+++++.
T Consensus 206 L~~~~~-~~tiiivsH~~~-~~~~~~dri~~l~~G~i~~~g~~~~~~ 250 (276)
T PRK14271 206 IRSLAD-RLTVIIVTHNLA-QAARISDRAALFFDGRLVEEGPTEQLF 250 (276)
T ss_pred HHHHhc-CCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999976 589999999997 688999999999999999999988763
No 187
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.3e-36 Score=308.66 Aligned_cols=192 Identities=24% Similarity=0.372 Sum_probs=156.7
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCC---CceeEEEECCEecCc-----ccccceeEEEccCCCCCCCCCHHHHHHHHHHc
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKE---SLQGAVTLNGEVLES-----KLLKIISAYVMQDDLLFPMLTVEETLMFAAEF 72 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~---~~~G~I~i~g~~~~~-----~~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l 72 (592)
++|+|||||||||||++|+|+.++. +.+|+|.++|+++.. ...++.++|++|++.+++. ||+||+.+.+..
T Consensus 42 ~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~ 120 (269)
T PRK14259 42 TALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVDPVEVRRRIGMVFQQPNPFPK-SIYENIAFGARI 120 (269)
T ss_pred EEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCCHHHHhhceEEEccCCccchh-hHHHHHhhhhhh
Confidence 4899999999999999999997631 357999999998642 2345678999999998885 999999987654
Q ss_pred cCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHH
Q 048028 73 RLPRSVTKTKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVN 152 (592)
Q Consensus 73 ~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~ 152 (592)
+. .. .+.+++++++++.+++........ +..++.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+
T Consensus 121 ~~---~~-~~~~~~~~~~l~~~~l~~~l~~~~-~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~gLD~~~~~~l~~ 195 (269)
T PRK14259 121 NG---YT-GDMDELVERSLRKAAVWDECKDKL-NESGYSLSGGQQQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEE 195 (269)
T ss_pred cC---Cc-HHHHHHHHHHHHHhCCcchhhhhh-CCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHH
Confidence 31 12 233456788899988743211111 34456799999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCEEEEEecCChhHHHhhhceEEEecC-----------CeEeeecChhhHH
Q 048028 153 VLQRIAKSGSIVIMSIHQPSYRILSLLDRLIILSH-----------GQSVYNETPSNLA 200 (592)
Q Consensus 153 ~l~~la~~g~tvi~~~H~~~~~i~~~~D~v~ll~~-----------G~~v~~g~~~~~~ 200 (592)
.|+++++ ++|||+++|+++ ++.++||++++|++ |++++.|+++++.
T Consensus 196 ~l~~~~~-~~tiiivtH~~~-~~~~~~d~i~~l~~~~~~~~~~g~~g~~~~~~~~~~~~ 252 (269)
T PRK14259 196 TMHELKK-NFTIVIVTHNMQ-QAVRVSDMTAFFNAEEVEGGSGGKVGYLVEFNETKKIF 252 (269)
T ss_pred HHHHHhc-CCEEEEEeCCHH-HHHHhcCEEEEEeccccccccccccceEEEeCCHHHHH
Confidence 9999964 789999999997 68899999999996 6789999988774
No 188
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=100.00 E-value=3.5e-36 Score=304.80 Aligned_cols=188 Identities=23% Similarity=0.332 Sum_probs=157.0
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCC--CceeEEEECCEecCcccc-cceeEEEccCCC--CCCCCCHHHHHHHHHHccCC
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKE--SLQGAVTLNGEVLESKLL-KIISAYVMQDDL--LFPMLTVEETLMFAAEFRLP 75 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~--~~~G~I~i~g~~~~~~~~-~~~~~yv~Q~~~--l~~~lTV~E~l~f~~~l~~~ 75 (592)
++|+||||||||||+++|+|+.++. +.+|+|.++|++++.... ++.++|++|++. +.+.+|+.+++.+.+....
T Consensus 32 ~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~- 110 (254)
T PRK10418 32 LALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPCALRGRKIATIMQNPRSAFNPLHTMHTHARETCLALG- 110 (254)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeeccccccccceEEEEecCCccccCccccHHHHHHHHHHHcC-
Confidence 5899999999999999999998751 156999999998764333 356899999974 5567899999876543221
Q ss_pred CCCCHHHHHHHHHHHHHHcCCcc---cccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHH
Q 048028 76 RSVTKTKKQERVEALINQLGLRS---AAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVN 152 (592)
Q Consensus 76 ~~~~~~~~~~~v~~~l~~lgL~~---~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~ 152 (592)
... .++++.++++.++|.+ ..++ .++.|||||||||+||++|+.+|++|||||||+|||+.++..+.+
T Consensus 111 --~~~--~~~~~~~~l~~~~l~~~~~~~~~-----~~~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~ 181 (254)
T PRK10418 111 --KPA--DDATLTAALEAVGLENAARVLKL-----YPFEMSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARILD 181 (254)
T ss_pred --CCh--HHHHHHHHHHHcCCCChhhhhhc-----CCcccCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHH
Confidence 111 2367899999999976 2343 445799999999999999999999999999999999999999999
Q ss_pred HHHHHHHc-CCEEEEEecCChhHHHhhhceEEEecCCeEeeecChhhH
Q 048028 153 VLQRIAKS-GSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNETPSNL 199 (592)
Q Consensus 153 ~l~~la~~-g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~~~~ 199 (592)
.|++++++ |+|||+++|+++ ++.+++|++++|++|+++..|+++++
T Consensus 182 ~L~~~~~~~g~til~~sH~~~-~~~~~~d~v~~l~~G~i~~~~~~~~~ 228 (254)
T PRK10418 182 LLESIVQKRALGMLLVTHDMG-VVARLADDVAVMSHGRIVEQGDVETL 228 (254)
T ss_pred HHHHHHHhcCcEEEEEecCHH-HHHHhCCEEEEEECCEEEEecCHHHH
Confidence 99999875 899999999997 57889999999999999999998776
No 189
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.1e-36 Score=304.85 Aligned_cols=195 Identities=24% Similarity=0.348 Sum_probs=161.3
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCC---CceeEEEECCEecCc-----ccccceeEEEccCCCCCCCCCHHHHHHHHHHc
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKE---SLQGAVTLNGEVLES-----KLLKIISAYVMQDDLLFPMLTVEETLMFAAEF 72 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~---~~~G~I~i~g~~~~~-----~~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l 72 (592)
++|+|||||||||||++|+|+.++. ..+|+|.++|+++.. ...++.++|++|+..+++ +|++||+.+....
T Consensus 36 ~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~l~~-~tv~enl~~~~~~ 114 (261)
T PRK14258 36 TAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVNLNRLRRQVSMVHPKPNLFP-MSVYDNVAYGVKI 114 (261)
T ss_pred EEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccchHHhhccEEEEecCCccCc-ccHHHHHHHHHHh
Confidence 5899999999999999999998753 136999999988632 234567899999998888 8999999886543
Q ss_pred cCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHH
Q 048028 73 RLPRSVTKTKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVN 152 (592)
Q Consensus 73 ~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~ 152 (592)
.. ..+..+.++++.++++.+++.+..+... +..+..||||||||++||++|+.+|++|+|||||+|||+.++..+.+
T Consensus 115 ~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LSgGq~qrv~laral~~~p~vllLDEP~~~LD~~~~~~l~~ 191 (261)
T PRK14258 115 VG--WRPKLEIDDIVESALKDADLWDEIKHKI-HKSALDLSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVES 191 (261)
T ss_pred cC--CCcHHHHHHHHHHHHHHcCCcchhhhHh-cCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHH
Confidence 21 1133344567889999999854322111 34556799999999999999999999999999999999999999999
Q ss_pred HHHHHHH-cCCEEEEEecCChhHHHhhhceEEEecC-----CeEeeecChhhHH
Q 048028 153 VLQRIAK-SGSIVIMSIHQPSYRILSLLDRLIILSH-----GQSVYNETPSNLA 200 (592)
Q Consensus 153 ~l~~la~-~g~tvi~~~H~~~~~i~~~~D~v~ll~~-----G~~v~~g~~~~~~ 200 (592)
.|+++++ +|+|||+++|++. ++.++||++++|++ |++++.|+++++.
T Consensus 192 ~l~~l~~~~~~tiiivsH~~~-~i~~~~d~i~~l~~~~~~~G~i~~~~~~~~~~ 244 (261)
T PRK14258 192 LIQSLRLRSELTMVIVSHNLH-QVSRLSDFTAFFKGNENRIGQLVEFGLTKKIF 244 (261)
T ss_pred HHHHHHHhCCCEEEEEECCHH-HHHHhcCEEEEEccCCCcCceEEEeCCHHHHH
Confidence 9999976 4899999999997 68899999999999 9999999998873
No 190
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.5e-36 Score=303.83 Aligned_cols=193 Identities=21% Similarity=0.346 Sum_probs=158.5
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCC---CceeEEEECCEecCc-----ccccceeEEEccCCCCCCCCCHHHHHHHHHHc
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKE---SLQGAVTLNGEVLES-----KLLKIISAYVMQDDLLFPMLTVEETLMFAAEF 72 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~---~~~G~I~i~g~~~~~-----~~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l 72 (592)
++|+||||||||||+++|+|+.++. ..+|+|.++|+++.. ...++.++|++|++.+++. ||+||+.+..+.
T Consensus 35 ~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~-tv~eni~~~~~~ 113 (253)
T PRK14261 35 TALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADVVALRRKIGMVFQRPNPFPK-SIYENVAYGPRI 113 (253)
T ss_pred EEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccchhhhhceEEEEecCCccCcc-cHHHHHHhhHHh
Confidence 5899999999999999999987532 147999999998753 2335668999999998885 999999987654
Q ss_pred cCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHH
Q 048028 73 RLPRSVTKTKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVN 152 (592)
Q Consensus 73 ~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~ 152 (592)
+. .....+.++++.++++.+++.+...+.. +..++.||||||||++||++|+.+|++++|||||+|||+.++..+.+
T Consensus 114 ~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~-~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~l~~ 190 (253)
T PRK14261 114 HG--EKNKKTLDTIVEKSLKGAALWDEVKDRL-HDSALSLSGGQQQRLCIARTLAVNPEVILMDEPCSALDPIATAKIED 190 (253)
T ss_pred cC--CCCHHHHHHHHHHHHHHhcCchhhHHHh-hcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHH
Confidence 31 1122344567888999998853221111 34456799999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCEEEEEecCChhHHHhhhceEEEecCCeEeeecChhhH
Q 048028 153 VLQRIAKSGSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNETPSNL 199 (592)
Q Consensus 153 ~l~~la~~g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~~~~ 199 (592)
.|+++++ ++|||+++|++. ++.+.+|++++|++|+++..|+++++
T Consensus 191 ~l~~~~~-~~tvii~sh~~~-~~~~~~d~v~~l~~G~i~~~g~~~~~ 235 (253)
T PRK14261 191 LIEDLKK-EYTVIIVTHNMQ-QAARVSDYTGFMYLGKLIEFDKTTQI 235 (253)
T ss_pred HHHHHhh-CceEEEEEcCHH-HHHhhCCEEEEEECCEEEEcCCHHHH
Confidence 9999976 589999999997 58889999999999999999998765
No 191
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4e-36 Score=305.25 Aligned_cols=193 Identities=24% Similarity=0.376 Sum_probs=159.2
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCC-C--ceeEEEECCEecCc-----ccccceeEEEccCCCCCCCCCHHHHHHHHHHc
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKE-S--LQGAVTLNGEVLES-----KLLKIISAYVMQDDLLFPMLTVEETLMFAAEF 72 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~-~--~~G~I~i~g~~~~~-----~~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l 72 (592)
++|+|+||||||||+|+|+|+.++. + .+|+|.++|+++.. ...++.++|++|++.+++ +||+||+.+....
T Consensus 36 ~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~ 114 (259)
T PRK14260 36 TAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRININRLRRQIGMVFQRPNPFP-MSIYENVAYGVRI 114 (259)
T ss_pred EEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccchHhhhhheEEEecccccCC-ccHHHHHHHHHHH
Confidence 5899999999999999999998753 1 47999999998742 234567899999999888 8999999887543
Q ss_pred cCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHH
Q 048028 73 RLPRSVTKTKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVN 152 (592)
Q Consensus 73 ~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~ 152 (592)
+. ..++.+..++++++++.+++.+..... -+..++.|||||||||+||++|+.+|++++|||||+|||+.++..+.+
T Consensus 115 ~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~-~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~ 191 (259)
T PRK14260 115 SA--KLPQADLDEIVESALKGAALWQEVKDK-LNKSALGLSGGQQQRLCIARALAIKPKVLLMDEPCSALDPIATMKVEE 191 (259)
T ss_pred hc--CCCHHHHHHHHHHHHHHcCCcchhhhH-hcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHH
Confidence 31 123344456788899999985321111 134456799999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCEEEEEecCChhHHHhhhceEEEec-----CCeEeeecChhhH
Q 048028 153 VLQRIAKSGSIVIMSIHQPSYRILSLLDRLIILS-----HGQSVYNETPSNL 199 (592)
Q Consensus 153 ~l~~la~~g~tvi~~~H~~~~~i~~~~D~v~ll~-----~G~~v~~g~~~~~ 199 (592)
.|+++++ ++|||+++|+++ ++.+++|++++|+ +|++++.|+++++
T Consensus 192 ~l~~~~~-~~tiii~tH~~~-~i~~~~d~i~~l~~~~~~~G~i~~~~~~~~~ 241 (259)
T PRK14260 192 LIHSLRS-ELTIAIVTHNMQ-QATRVSDFTAFFSTDESRIGQMVEFGVTTQI 241 (259)
T ss_pred HHHHHhc-CCEEEEEeCCHH-HHHHhcCeEEEEeccCCCCceEEEeCCHHHH
Confidence 9999975 689999999998 6889999999998 5999999999876
No 192
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=100.00 E-value=5.1e-36 Score=304.30 Aligned_cols=189 Identities=23% Similarity=0.355 Sum_probs=157.0
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEe-----cCcc---c----ccceeEEEccCC--CCCCCCCHHHHH
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEV-----LESK---L----LKIISAYVMQDD--LLFPMLTVEETL 66 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~-----~~~~---~----~~~~~~yv~Q~~--~l~~~lTV~E~l 66 (592)
++|+||||||||||+|+|+|+.+|. +|+|.++|++ +... . .++.++|++|++ .+++.+|+.||+
T Consensus 35 ~~i~G~nGsGKSTLl~~l~Gl~~p~--~G~i~~~g~~~~~~~i~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i 112 (258)
T PRK11701 35 LGIVGESGSGKTTLLNALSARLAPD--AGEVHYRMRDGQLRDLYALSEAERRRLLRTEWGFVHQHPRDGLRMQVSAGGNI 112 (258)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCCC--CCEEEECCccccccccccCCHHHHHHHhhcceEEEeeCcccccCccccHHHHH
Confidence 5899999999999999999998754 5999999987 5421 1 234689999997 467888999999
Q ss_pred HHHHHccCCCCCCHHHHHHHHHHHHHHcCCcc-cccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHH
Q 048028 67 MFAAEFRLPRSVTKTKKQERVEALINQLGLRS-AAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDST 145 (592)
Q Consensus 67 ~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~ 145 (592)
.+...... .....+.+++++++++.+++.+ ..++. ++.||||||||++|||+|+.+|++|+|||||+|||+.
T Consensus 113 ~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~~LS~Gq~qrl~laral~~~p~llllDEPt~~LD~~ 185 (258)
T PRK11701 113 GERLMAVG--ARHYGDIRATAGDWLERVEIDAARIDDL-----PTTFSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVS 185 (258)
T ss_pred HHHHHHhc--cCcHHHHHHHHHHHHHHcCCChhHHhCC-----CccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHH
Confidence 76432111 1122344567889999999974 45544 4569999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHc-CCEEEEEecCChhHHHhhhceEEEecCCeEeeecChhhH
Q 048028 146 SAFMVVNVLQRIAKS-GSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNETPSNL 199 (592)
Q Consensus 146 ~~~~i~~~l~~la~~-g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~~~~ 199 (592)
++..+.+.|++++++ |.|||+++|+++ .+.+.+|++++|++|++++.|+++++
T Consensus 186 ~~~~l~~~l~~~~~~~~~tii~isH~~~-~~~~~~d~i~~l~~g~i~~~~~~~~~ 239 (258)
T PRK11701 186 VQARLLDLLRGLVRELGLAVVIVTHDLA-VARLLAHRLLVMKQGRVVESGLTDQV 239 (258)
T ss_pred HHHHHHHHHHHHHHhcCcEEEEEeCCHH-HHHHhcCEEEEEECCEEEEeCCHHHH
Confidence 999999999999875 899999999997 57789999999999999999998765
No 193
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.1e-36 Score=306.62 Aligned_cols=193 Identities=24% Similarity=0.377 Sum_probs=159.3
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCC---CceeEEEECCEecCc-----ccccceeEEEccCCCCCCCCCHHHHHHHHHHc
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKE---SLQGAVTLNGEVLES-----KLLKIISAYVMQDDLLFPMLTVEETLMFAAEF 72 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~---~~~G~I~i~g~~~~~-----~~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l 72 (592)
++|+||||||||||+++|+|+.++. +.+|+|.++|.++.. ...++.++|++|++.+++. ||+||+.+....
T Consensus 54 ~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~ 132 (272)
T PRK14236 54 TAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVDVAELRRRVGMVFQRPNPFPK-SIYENVVYGLRL 132 (272)
T ss_pred EEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccccCHHHHhccEEEEecCCccCcc-cHHHHHHHHHHh
Confidence 5899999999999999999997631 357999999998753 1345678999999998886 999999887543
Q ss_pred cCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHH
Q 048028 73 RLPRSVTKTKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVN 152 (592)
Q Consensus 73 ~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~ 152 (592)
+. ...+...+++++++++.+++.+...+.. +..++.|||||||||+|||+|+.+|++++|||||+|||+.++..+.+
T Consensus 133 ~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~ 209 (272)
T PRK14236 133 QG--INNRRVLDEAVERSLRGAALWDEVKDRL-HENAFGLSGGQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEE 209 (272)
T ss_pred cC--CCcHHHHHHHHHHHHHHcCCChhHHHHh-hCCcccCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHH
Confidence 21 1122334567888999999864211111 33456799999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCEEEEEecCChhHHHhhhceEEEecCCeEeeecChhhH
Q 048028 153 VLQRIAKSGSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNETPSNL 199 (592)
Q Consensus 153 ~l~~la~~g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~~~~ 199 (592)
.|+++++ +.|+|+++|+++ ++.+.+||+++|++|+++..|+++++
T Consensus 210 ~L~~~~~-~~tiiivtH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~ 254 (272)
T PRK14236 210 LITELKS-KYTIVIVTHNMQ-QAARVSDYTAFMYMGKLVEYGDTDTL 254 (272)
T ss_pred HHHHHHh-CCeEEEEeCCHH-HHHhhCCEEEEEECCEEEecCCHHHH
Confidence 9999976 789999999997 58889999999999999999988765
No 194
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=100.00 E-value=2.4e-36 Score=335.17 Aligned_cols=184 Identities=26% Similarity=0.437 Sum_probs=160.9
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCccc----ccceeEEEccCCCCCCCCCHHHHHHHHHHccCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLESKL----LKIISAYVMQDDLLFPMLTVEETLMFAAEFRLPR 76 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~~~----~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~~~ 76 (592)
++|+||||||||||||+|+|+++|. +|+|.++|+++.... .++.++|++|++.+++.+||+||+.+....
T Consensus 40 ~~liG~NGsGKSTLl~~l~Gl~~p~--~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~---- 113 (510)
T PRK15439 40 HALLGGNGAGKSTLMKIIAGIVPPD--SGTLEIGGNPCARLTPAKAHQLGIYLVPQEPLLFPNLSVKENILFGLPK---- 113 (510)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCCC--ceEEEECCEECCCCCHHHHHhCCEEEEeccCccCCCCcHHHHhhccccc----
Confidence 4899999999999999999998754 599999999875321 224589999999999999999999875321
Q ss_pred CCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHH
Q 048028 77 SVTKTKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVNVLQR 156 (592)
Q Consensus 77 ~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~ 156 (592)
..+.+++++++++.+||.+..++.++ .|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|++
T Consensus 114 ---~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgG~~qrv~la~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~ 185 (510)
T PRK15439 114 ---RQASMQKMKQLLAALGCQLDLDSSAG-----SLEVADRQIVEILRGLMRDSRILILDEPTASLTPAETERLFSRIRE 185 (510)
T ss_pred ---chHHHHHHHHHHHHcCCCccccCChh-----hCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHH
Confidence 12345678999999999887766654 5999999999999999999999999999999999999999999999
Q ss_pred HHHcCCEEEEEecCChhHHHhhhceEEEecCCeEeeecChhhH
Q 048028 157 IAKSGSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNETPSNL 199 (592)
Q Consensus 157 la~~g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~~~~ 199 (592)
++++|+|||+++|+++ ++.++||++++|++|++++.|+++++
T Consensus 186 ~~~~g~tiiivtHd~~-~~~~~~d~i~~l~~G~i~~~g~~~~~ 227 (510)
T PRK15439 186 LLAQGVGIVFISHKLP-EIRQLADRISVMRDGTIALSGKTADL 227 (510)
T ss_pred HHHCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEecChHHc
Confidence 9888999999999997 58899999999999999999998765
No 195
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=100.00 E-value=3e-36 Score=333.95 Aligned_cols=193 Identities=23% Similarity=0.402 Sum_probs=162.2
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCccc----ccceeEEEccCCCCCCCCCHHHHHHHHHHccCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLESKL----LKIISAYVMQDDLLFPMLTVEETLMFAAEFRLPR 76 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~~~----~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~~~ 76 (592)
++|+||||||||||||+|+|+.++.+.+|+|.++|+++.... .++.++||+|++.+++.+||+||+.+........
T Consensus 30 ~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~ 109 (500)
T TIGR02633 30 VGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERAGIVIIHQELTLVPELSVAENIFLGNEITLPG 109 (500)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhCCEEEEeeccccCCCCcHHHHHHhhccccccc
Confidence 589999999999999999999875335799999999875421 2456899999999999999999998865432111
Q ss_pred -CCCHHHHHHHHHHHHHHcCCcccc-cccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHH
Q 048028 77 -SVTKTKKQERVEALINQLGLRSAA-KTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVNVL 154 (592)
Q Consensus 77 -~~~~~~~~~~v~~~l~~lgL~~~~-~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l 154 (592)
....++.+++++++++.+||.+.. ++.+ +.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|
T Consensus 110 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgG~~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l 184 (500)
T TIGR02633 110 GRMAYNAMYLRAKNLLRELQLDADNVTRPV-----GDYGGGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDII 184 (500)
T ss_pred cccCHHHHHHHHHHHHHHcCCCCCcccCch-----hhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHH
Confidence 123344557789999999998654 3434 469999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCEEEEEecCChhHHHhhhceEEEecCCeEeeecChhhH
Q 048028 155 QRIAKSGSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNETPSNL 199 (592)
Q Consensus 155 ~~la~~g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~~~~ 199 (592)
++++++|+|||+++|+++ ++.++||++++|++|+++..|++++.
T Consensus 185 ~~l~~~g~tviiitHd~~-~~~~~~d~i~~l~~G~i~~~~~~~~~ 228 (500)
T TIGR02633 185 RDLKAHGVACVYISHKLN-EVKAVCDTICVIRDGQHVATKDMSTM 228 (500)
T ss_pred HHHHhCCCEEEEEeCcHH-HHHHhCCEEEEEeCCeEeeecCcccC
Confidence 999888999999999987 68899999999999999998887643
No 196
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=100.00 E-value=2.1e-36 Score=367.81 Aligned_cols=193 Identities=31% Similarity=0.431 Sum_probs=173.3
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCc--ccccceeEEEccCCCCCCCCCHHHHHHHHHHccCCCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLES--KLLKIISAYVMQDDLLFPMLTVEETLMFAAEFRLPRSV 78 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~--~~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~~~~~ 78 (592)
+||+||||||||||+|+|+|..+++ +|+|.++|+++.. ...++.+||++|++.+++.+||+|+|.+.++++ ..
T Consensus 1968 ~gLLG~NGAGKTTLlkmL~Gll~pt--sG~I~i~G~~i~~~~~~~r~~IGy~pQ~~~L~~~LTv~E~L~l~a~l~---g~ 2042 (2272)
T TIGR01257 1968 FGLLGVNGAGKTTTFKMLTGDTTVT--SGDATVAGKSILTNISDVHQNMGYCPQFDAIDDLLTGREHLYLYARLR---GV 2042 (2272)
T ss_pred EEEECCCCCcHHHHHHHHhCCCCCC--ccEEEECCEECcchHHHHhhhEEEEeccccCCCCCCHHHHHHHHHHhc---CC
Confidence 4899999999999999999998864 5999999998753 234567999999999999999999999887765 23
Q ss_pred CHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 048028 79 TKTKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVNVLQRIA 158 (592)
Q Consensus 79 ~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~la 158 (592)
++++.+++++++++.+||.+.+|++++ .|||||||||+||+||+.+|+|+||||||+|||+.+++.+.+.|++++
T Consensus 2043 ~~~~~~~~v~~lLe~lgL~~~~dk~~~-----~LSGGqKqRLslA~ALi~~P~VLLLDEPTsGLDp~sr~~l~~lL~~l~ 2117 (2272)
T TIGR01257 2043 PAEEIEKVANWSIQSLGLSLYADRLAG-----TYSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSII 2117 (2272)
T ss_pred CHHHHHHHHHHHHHHcCCHHHhcCChh-----hCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHH
Confidence 445556788999999999988877765 599999999999999999999999999999999999999999999998
Q ss_pred HcCCEEEEEecCChhHHHhhhceEEEecCCeEeeecChhhHHHHHH
Q 048028 159 KSGSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNETPSNLAQFFA 204 (592)
Q Consensus 159 ~~g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~~~~~~~f~ 204 (592)
++|+|||++||+++ ++..+|||+++|++|+++..|+++++++.|.
T Consensus 2118 ~~g~TIILtTH~me-e~e~lcDrV~IL~~G~i~~~Gs~q~Lk~~~g 2162 (2272)
T TIGR01257 2118 REGRAVVLTSHSME-ECEALCTRLAIMVKGAFQCLGTIQHLKSKFG 2162 (2272)
T ss_pred hCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEECCHHHHHHHhC
Confidence 88999999999997 7999999999999999999999999988775
No 197
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.2e-36 Score=332.95 Aligned_cols=191 Identities=21% Similarity=0.333 Sum_probs=162.5
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCcc----cccceeEEEccCCCCCCCCCHHHHHHHHHHccCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLESK----LLKIISAYVMQDDLLFPMLTVEETLMFAAEFRLPR 76 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~~----~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~~~ 76 (592)
++|+||||||||||+|+|+|+.+|. +|+|.++|+++... ..++.++|++|++.+++.+||+||+.+........
T Consensus 27 ~~liG~nGsGKSTLl~~l~Gl~~p~--~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~ 104 (491)
T PRK10982 27 HALMGENGAGKSTLLKCLFGIYQKD--SGSILFQGKEIDFKSSKEALENGISMVHQELNLVLQRSVMDNMWLGRYPTKGM 104 (491)
T ss_pred EEEECCCCCCHHHHHHHHcCCCCCC--ceEEEECCEECCCCCHHHHHhCCEEEEecccccccCCCHHHHhhccccccccc
Confidence 4899999999999999999998754 59999999987532 23456899999999999999999998753211011
Q ss_pred CCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHH
Q 048028 77 SVTKTKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVNVLQR 156 (592)
Q Consensus 77 ~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~ 156 (592)
..+..+..++++++++.+|+.+..++.+ ..|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|++
T Consensus 105 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgGq~qrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~ 179 (491)
T PRK10982 105 FVDQDKMYRDTKAIFDELDIDIDPRAKV-----ATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRK 179 (491)
T ss_pred ccCHHHHHHHHHHHHHHcCCCCCccCch-----hhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Confidence 1233444567899999999987776655 45999999999999999999999999999999999999999999999
Q ss_pred HHHcCCEEEEEecCChhHHHhhhceEEEecCCeEeeecChhhH
Q 048028 157 IAKSGSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNETPSNL 199 (592)
Q Consensus 157 la~~g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~~~~ 199 (592)
++++|+|||+++|+++ ++.++||++++|++|+++..|++++.
T Consensus 180 l~~~g~tvii~tH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~ 221 (491)
T PRK10982 180 LKERGCGIVYISHKME-EIFQLCDEITILRDGQWIATQPLAGL 221 (491)
T ss_pred HHhCCCEEEEEecCHH-HHHHhCCEEEEEECCEEEeecChhhC
Confidence 9888999999999997 68889999999999999999987664
No 198
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=100.00 E-value=9.7e-37 Score=305.65 Aligned_cols=184 Identities=29% Similarity=0.499 Sum_probs=146.7
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCc---ccccceeEEEccCCCCCCCCCHHHHHHHHHHccCCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLES---KLLKIISAYVMQDDLLFPMLTVEETLMFAAEFRLPRS 77 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~---~~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~~~~ 77 (592)
++|+||||||||||+++|+|+.++. +|+|.++|+++.. ...++.++|++|++.+++ .||+||+.+... .
T Consensus 31 ~~i~G~nGsGKSTLl~~l~Gl~~~~--~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~-----~ 102 (237)
T cd03252 31 VGIVGRSGSGKSTLTKLIQRFYVPE--NGRVLVDGHDLALADPAWLRRQVGVVLQENVLFN-RSIRDNIALADP-----G 102 (237)
T ss_pred EEEECCCCCCHHHHHHHHhcCcCCC--CCEEEECCeehHhcCHHHHhhcEEEEcCCchhcc-chHHHHhhccCC-----C
Confidence 4899999999999999999998754 5999999988643 234567899999998775 699999976421 1
Q ss_pred CCHHHHH-----HHHHHHHHHc--CCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHH
Q 048028 78 VTKTKKQ-----ERVEALINQL--GLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMV 150 (592)
Q Consensus 78 ~~~~~~~-----~~v~~~l~~l--gL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i 150 (592)
....+.. ...+++++.+ ++++..+ ..++.|||||||||+||++|+.+|++|+|||||+|||+.++..+
T Consensus 103 ~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~-----~~~~~LSgG~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l 177 (237)
T cd03252 103 MSMERVIEAAKLAGAHDFISELPEGYDTIVG-----EQGAGLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAI 177 (237)
T ss_pred CCHHHHHHHHHHcCcHHHHHhCcccccchhh-----cCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHH
Confidence 1111111 1223344444 3333333 34567999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCEEEEEecCChhHHHhhhceEEEecCCeEeeecChhhHH
Q 048028 151 VNVLQRIAKSGSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNETPSNLA 200 (592)
Q Consensus 151 ~~~l~~la~~g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~~~~~ 200 (592)
.+.|+++++ |+|||+++|+++ ++ +.||++++|++|++++.|+++++.
T Consensus 178 ~~~l~~~~~-~~tiii~sH~~~-~~-~~~d~v~~l~~G~i~~~~~~~~~~ 224 (237)
T cd03252 178 MRNMHDICA-GRTVIIIAHRLS-TV-KNADRIIVMEKGRIVEQGSHDELL 224 (237)
T ss_pred HHHHHHhcC-CCEEEEEeCCHH-HH-HhCCEEEEEECCEEEEEcCHHHHH
Confidence 999999974 899999999997 45 569999999999999999987764
No 199
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.9e-36 Score=303.75 Aligned_cols=191 Identities=21% Similarity=0.337 Sum_probs=159.8
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCC---CceeEEEECCEecCc-----ccccceeEEEccCCCCCCCCCHHHHHHHHHHc
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKE---SLQGAVTLNGEVLES-----KLLKIISAYVMQDDLLFPMLTVEETLMFAAEF 72 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~---~~~G~I~i~g~~~~~-----~~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l 72 (592)
++|+||||||||||+++|+|++++. +.+|+|.++|+++.. ...++.++|++|++.++ .+|+.||+.+....
T Consensus 37 ~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~-~~tv~enl~~~~~~ 115 (261)
T PRK14263 37 TGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPVVVRRYIGMVFQQPNPF-SMSIFDNVAFGLRL 115 (261)
T ss_pred EEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccchHhhhhceEEEecCCccc-cccHHHHHHHHHhh
Confidence 5899999999999999999998752 257999999998742 13456789999999888 58999999987654
Q ss_pred cCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHH
Q 048028 73 RLPRSVTKTKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVN 152 (592)
Q Consensus 73 ~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~ 152 (592)
+. . ..+.+++++++++.++|.+..+... +..++.||||||||++|||||+.+|++|+|||||+|||+.++.++.+
T Consensus 116 ~~---~-~~~~~~~~~~~l~~~~l~~~i~~~~-~~~~~~LS~G~~qrv~laral~~~p~llllDEPtsgLD~~~~~~l~~ 190 (261)
T PRK14263 116 NR---Y-KGDLGDRVKHALQGAALWDEVKDKL-KVSGLSLSGGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEE 190 (261)
T ss_pred cC---c-hHHHHHHHHHHHHHcCCchhhhhhh-hCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHH
Confidence 31 1 2234567899999999865433222 24567899999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCEEEEEecCChhHHHhhhceEEEec--------CCeEeeecChhhH
Q 048028 153 VLQRIAKSGSIVIMSIHQPSYRILSLLDRLIILS--------HGQSVYNETPSNL 199 (592)
Q Consensus 153 ~l~~la~~g~tvi~~~H~~~~~i~~~~D~v~ll~--------~G~~v~~g~~~~~ 199 (592)
.|++++ +++|+|+++|+++ ++.+++||+++|+ +|+++..|+++++
T Consensus 191 ~l~~~~-~~~tii~isH~~~-~i~~~~d~v~~l~~~~~~~~~~G~i~~~g~~~~~ 243 (261)
T PRK14263 191 LMVELK-KDYTIALVTHNMQ-QAIRVADTTAFFSVDISQGTRTGYLVEMGPTAQI 243 (261)
T ss_pred HHHHHh-cCCeEEEEeCCHH-HHHHhCCEEEEEecccccccCCceEEEeCCHHHH
Confidence 999996 4789999999997 5889999999996 8999999998775
No 200
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.3e-36 Score=307.94 Aligned_cols=189 Identities=24% Similarity=0.398 Sum_probs=156.9
Q ss_pred CEEECCCCCcHHHHHHHHhCCCC--CC-CceeEEEECCEecCc-----ccccceeEEEccCCCCCCCCCHHHHHHHHHHc
Q 048028 1 MAILGASGAGKTTLMDALAGRIE--KE-SLQGAVTLNGEVLES-----KLLKIISAYVMQDDLLFPMLTVEETLMFAAEF 72 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~--~~-~~~G~I~i~g~~~~~-----~~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l 72 (592)
++|+|||||||||||++|+|+.+ +. +.+|+|.++|+++.. ...++.++|++|++.+++. ||.||+.+....
T Consensus 68 ~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~ 146 (286)
T PRK14275 68 TAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDEVLLRKKIGMVFQKPNPFPK-SIFDNIAYGPRL 146 (286)
T ss_pred EEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccchHHhhhcEEEECCCCCCCcc-CHHHHHHhHHHh
Confidence 48999999999999999999854 21 257999999998742 1245678999999988885 999999987543
Q ss_pred cCCCCCCHHHHHHHHHHHHHHcCCc----ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHH
Q 048028 73 RLPRSVTKTKKQERVEALINQLGLR----SAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAF 148 (592)
Q Consensus 73 ~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~ 148 (592)
+. ..+....++++.++++.+|+. +..+ ..++.|||||||||+||++|+.+|++|+|||||+|||+.++.
T Consensus 147 ~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~-----~~~~~LSgGq~qrv~LAraL~~~p~lllLDEPt~gLD~~~~~ 219 (286)
T PRK14275 147 HG--INDKKQLEEIVEKSLRKAALWDEVSDRLD-----KNALGLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATA 219 (286)
T ss_pred cC--CCcHHHHHHHHHHHHHHhCCccchhhHhh-----CChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHH
Confidence 21 112233456788899999874 2333 345679999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCEEEEEecCChhHHHhhhceEEEecCCeEeeecChhhH
Q 048028 149 MVVNVLQRIAKSGSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNETPSNL 199 (592)
Q Consensus 149 ~i~~~l~~la~~g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~~~~ 199 (592)
.+.+.|+++++ ++|||+++|+++ ++.+++||+++|++|+++..|+++++
T Consensus 220 ~l~~~L~~~~~-~~tvIivsH~~~-~~~~~~d~i~~L~~G~i~~~g~~~~~ 268 (286)
T PRK14275 220 KIEDLIQELRG-SYTIMIVTHNMQ-QASRVSDYTMFFYEGVLVEHAPTAQL 268 (286)
T ss_pred HHHHHHHHHhc-CCeEEEEeCCHH-HHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 99999999975 689999999997 58889999999999999999998776
No 201
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.9e-36 Score=301.67 Aligned_cols=193 Identities=23% Similarity=0.383 Sum_probs=157.0
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCC--C-CceeEEEECCEecCc-----ccccceeEEEccCCCCCCCCCHHHHHHHHHHc
Q 048028 1 MAILGASGAGKTTLMDALAGRIEK--E-SLQGAVTLNGEVLES-----KLLKIISAYVMQDDLLFPMLTVEETLMFAAEF 72 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~--~-~~~G~I~i~g~~~~~-----~~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l 72 (592)
++|+||||||||||+++|+|..++ . +.+|+|.++|+++.. ...++.++|++|++.+++ .||+||+.+....
T Consensus 33 ~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~ 111 (251)
T PRK14251 33 TALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDLVELRKEVGMVFQQPTPFP-FSVYDNVAYGLKI 111 (251)
T ss_pred EEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchHHHhhccEEEEecCCccCC-CcHHHHHHHHHHH
Confidence 489999999999999999999862 1 257999999998742 124567899999998886 7999999876543
Q ss_pred cCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHH
Q 048028 73 RLPRSVTKTKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVN 152 (592)
Q Consensus 73 ~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~ 152 (592)
+. ....+..+++++++++.+++.+...... +..+++||||||||++||++|+.+|++++|||||+|||+.++..+.+
T Consensus 112 ~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LS~Gq~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~ 188 (251)
T PRK14251 112 AG--VKDKELIDQRVEESLKQAAIWKETKDNL-DRNAQAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEE 188 (251)
T ss_pred cC--CCCHHHHHHHHHHHHHHcCCCcchHHHh-ccChhhCCHHHHHHHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHH
Confidence 21 1122334467888999999853211011 23456799999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCEEEEEecCChhHHHhhhceEEEecCCeEeeecChhhH
Q 048028 153 VLQRIAKSGSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNETPSNL 199 (592)
Q Consensus 153 ~l~~la~~g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~~~~ 199 (592)
.|+++++ +.|||+++|+++ ++.+++|++++|++|+++..|+++++
T Consensus 189 ~l~~~~~-~~tiiiisH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~ 233 (251)
T PRK14251 189 TLMELKH-QYTFIMVTHNLQ-QAGRISDQTAFLMNGDLIEAGPTEEM 233 (251)
T ss_pred HHHHHHc-CCeEEEEECCHH-HHHhhcCEEEEEECCEEEEeCCHHHH
Confidence 9999964 689999999997 58889999999999999999988765
No 202
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7e-36 Score=305.00 Aligned_cols=193 Identities=22% Similarity=0.355 Sum_probs=156.2
Q ss_pred CEEECCCCCcHHHHHHHHhCCCC--C-CCceeEEEECCEecCc-----ccccceeEEEccCCCCCCCCCHHHHHHHHHHc
Q 048028 1 MAILGASGAGKTTLMDALAGRIE--K-ESLQGAVTLNGEVLES-----KLLKIISAYVMQDDLLFPMLTVEETLMFAAEF 72 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~--~-~~~~G~I~i~g~~~~~-----~~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l 72 (592)
++|+||||||||||+++|+|+.+ + .+.+|+|.++|+++.. ...++.++|++|++.+++. |++||+.+....
T Consensus 50 ~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~ 128 (268)
T PRK14248 50 TALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINVVNLRREIGMVFQKPNPFPK-SIYNNITHALKY 128 (268)
T ss_pred EEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccccHHHHhccEEEEecCCccCcc-cHHHHHHHHHHh
Confidence 48999999999999999999854 2 1357999999998743 1245678999999988885 999999876533
Q ss_pred cCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHH
Q 048028 73 RLPRSVTKTKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVN 152 (592)
Q Consensus 73 ~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~ 152 (592)
.. .......++++.+.++.+++.+...... +..++.||||||||++||++|+.+|++|||||||+|||+.++..+.+
T Consensus 129 ~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~ 205 (268)
T PRK14248 129 AG--ERRKSVLDEIVEESLTKAALWDEVKDRL-HSSALSLSGGQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEE 205 (268)
T ss_pred cC--CCcHHHHHHHHHHHHHHcCCCcchHHHH-hcCcccCCHHHHHHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHH
Confidence 21 1122233466788899998853211111 23456799999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCEEEEEecCChhHHHhhhceEEEecCCeEeeecChhhH
Q 048028 153 VLQRIAKSGSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNETPSNL 199 (592)
Q Consensus 153 ~l~~la~~g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~~~~ 199 (592)
.|+++++ ++|||+++|+++ ++.++|||+++|++|++++.|+++++
T Consensus 206 ~l~~~~~-~~tiii~tH~~~-~~~~~~d~v~~l~~G~i~~~~~~~~~ 250 (268)
T PRK14248 206 LITELKE-EYSIIIVTHNMQ-QALRVSDRTAFFLNGDLVEYDQTEQI 250 (268)
T ss_pred HHHHHhc-CCEEEEEEeCHH-HHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999965 689999999987 58899999999999999999998765
No 203
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.1e-36 Score=322.85 Aligned_cols=184 Identities=32% Similarity=0.528 Sum_probs=159.3
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecC---cccccceeEEEccCCCCCCCCCHHHHHHHHHHccCCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLE---SKLLKIISAYVMQDDLLFPMLTVEETLMFAAEFRLPRS 77 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~---~~~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~~~~ 77 (592)
+||+|+||||||||+++|+|+.++ ++|+|.+||.+.. ...+++.++||+|++.+|+. |++||+.++.. +
T Consensus 350 talvG~SGaGKSTLl~lL~G~~~~--~~G~I~vng~~l~~l~~~~~~k~i~~v~Q~p~lf~g-TireNi~l~~~-----~ 421 (559)
T COG4988 350 TALVGASGAGKSTLLNLLLGFLAP--TQGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFAG-TIRENILLARP-----D 421 (559)
T ss_pred EEEECCCCCCHHHHHHHHhCcCCC--CCceEEECCccccccCHHHHHhHeeeeCCCCccccc-cHHHHhhccCC-----c
Confidence 589999999999999999999885 4699999998764 45688999999999999998 99999987521 1
Q ss_pred CCHHHHHHHHHHHHHHcCCcc------cccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHH
Q 048028 78 VTKTKKQERVEALINQLGLRS------AAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVV 151 (592)
Q Consensus 78 ~~~~~~~~~v~~~l~~lgL~~------~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~ 151 (592)
.+ ++.+.++++..|+.+ -.|+.+|+ ..++|||||+|||++||||+++++++++||||++||.++.+.+.
T Consensus 422 ~s----~e~i~~al~~a~l~~~v~~p~GLdt~ige-~G~~LSgGQ~QRlaLARAll~~~~l~llDEpTA~LD~etE~~i~ 496 (559)
T COG4988 422 AS----DEEIIAALDQAGLLEFVPKPDGLDTVIGE-GGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIIL 496 (559)
T ss_pred CC----HHHHHHHHHHhcHHHhhcCCCcccchhcc-CCCCCCHHHHHHHHHHHHhcCCCCEEEecCCccCCCHhHHHHHH
Confidence 22 345666677666643 45777764 67889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCEEEEEecCChhHHHhhhceEEEecCCeEeeecChhhHH
Q 048028 152 NVLQRIAKSGSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNETPSNLA 200 (592)
Q Consensus 152 ~~l~~la~~g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~~~~~ 200 (592)
+.|.+++++ +|++++||++. ...-+|+|++|++|+++..|.++++.
T Consensus 497 ~~l~~l~~~-ktvl~itHrl~--~~~~~D~I~vld~G~l~~~g~~~~L~ 542 (559)
T COG4988 497 QALQELAKQ-KTVLVITHRLE--DAADADRIVVLDNGRLVEQGTHEELS 542 (559)
T ss_pred HHHHHHHhC-CeEEEEEcChH--HHhcCCEEEEecCCceeccCCHHHHh
Confidence 999999875 99999999986 45679999999999999999999874
No 204
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=100.00 E-value=8e-36 Score=304.47 Aligned_cols=190 Identities=27% Similarity=0.383 Sum_probs=160.1
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCcc------cccceeEEEccCC--CCCCCCCHHHHHHHHHHc
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLESK------LLKIISAYVMQDD--LLFPMLTVEETLMFAAEF 72 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~~------~~~~~~~yv~Q~~--~l~~~lTV~E~l~f~~~l 72 (592)
++|+||||||||||+++|+|+.++ .+|+|.++|+++... ..++.++|++|++ .+++..|+.|++.+....
T Consensus 41 ~~i~G~nGsGKSTLl~~l~Gl~~p--~sG~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~ 118 (268)
T PRK10419 41 VALLGRSGCGKSTLARLLVGLESP--SQGNVSWRGEPLAKLNRAQRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRH 118 (268)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEeccccChhHHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHh
Confidence 489999999999999999999875 469999999977431 2356789999997 467889999998765431
Q ss_pred cCCCCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHH
Q 048028 73 RLPRSVTKTKKQERVEALINQLGLR-SAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVV 151 (592)
Q Consensus 73 ~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~ 151 (592)
. ......+..++++++++.+|+. +..++. ++.||||||||++||++|+.+|++|||||||+|||+.++..+.
T Consensus 119 ~--~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~~LS~Ge~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~ 191 (268)
T PRK10419 119 L--LSLDKAERLARASEMLRAVDLDDSVLDKR-----PPQLSGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVI 191 (268)
T ss_pred h--ccCCHHHHHHHHHHHHHHcCCChhHhhCC-----CccCChHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHH
Confidence 1 1223445566789999999996 455544 4569999999999999999999999999999999999999999
Q ss_pred HHHHHHHHc-CCEEEEEecCChhHHHhhhceEEEecCCeEeeecChhhHH
Q 048028 152 NVLQRIAKS-GSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNETPSNLA 200 (592)
Q Consensus 152 ~~l~~la~~-g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~~~~~ 200 (592)
+.|++++++ |.|+|+++|+++ ++.+++|++++|++|++++.|+++++.
T Consensus 192 ~~l~~~~~~~~~tiiivsH~~~-~i~~~~d~i~~l~~G~i~~~g~~~~~~ 240 (268)
T PRK10419 192 RLLKKLQQQFGTACLFITHDLR-LVERFCQRVMVMDNGQIVETQPVGDKL 240 (268)
T ss_pred HHHHHHHHHcCcEEEEEECCHH-HHHHhCCEEEEEECCEEeeeCChhhcc
Confidence 999999875 899999999997 588899999999999999999987753
No 205
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=100.00 E-value=5.6e-36 Score=296.86 Aligned_cols=179 Identities=30% Similarity=0.539 Sum_probs=154.5
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCcc------cccceeEEEccCCCCCCCCCHHHHHHHHHHccC
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLESK------LLKIISAYVMQDDLLFPMLTVEETLMFAAEFRL 74 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~~------~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~ 74 (592)
++|+||||||||||+++|+|..++ .+|+|.++|+++... ..++.++|++|++.+++++|+.||+.+......
T Consensus 34 ~~I~G~nGsGKStLl~~l~G~~~~--~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~ 111 (220)
T TIGR02982 34 VILTGPSGSGKTTLLTLIGGLRSV--QEGSLKVLGQELYGASEKELVQLRRNIGYIFQAHNLLGFLTARQNVQMALELQP 111 (220)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCC--CCeEEEECCEEhHhcCHhHHHHHHhheEEEcCChhhcCCCCHHHHHHHHHHhcc
Confidence 589999999999999999999875 469999999987531 245679999999999999999999998754321
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHH
Q 048028 75 PRSVTKTKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVNVL 154 (592)
Q Consensus 75 ~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l 154 (592)
....++.+++++++++.+||.+..++.+ +.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|
T Consensus 112 --~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~lS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l 184 (220)
T TIGR02982 112 --NLSYQEARERARAMLEAVGLGDHLDYYP-----HNLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELM 184 (220)
T ss_pred --CCCHHHHHHHHHHHHHHcCChhhhhcCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHH
Confidence 1334555678899999999987776554 569999999999999999999999999999999999999999999
Q ss_pred HHHHH-cCCEEEEEecCChhHHHhhhceEEEecCCeE
Q 048028 155 QRIAK-SGSIVIMSIHQPSYRILSLLDRLIILSHGQS 190 (592)
Q Consensus 155 ~~la~-~g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~ 190 (592)
+++++ .++|+|+++|+++ +.+.+|++++|++|++
T Consensus 185 ~~~~~~~~~tii~~sh~~~--~~~~~d~v~~l~~g~~ 219 (220)
T TIGR02982 185 QKLAREQGCTILIVTHDNR--ILDVADRIVHMEDGKL 219 (220)
T ss_pred HHHHHHcCCEEEEEeCCHH--HHhhCCEEEEEECCEE
Confidence 99987 4899999999985 4589999999999986
No 206
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=6.2e-36 Score=292.71 Aligned_cols=163 Identities=36% Similarity=0.583 Sum_probs=138.7
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCC-CceeEEEECCEecCc--ccccceeEEEccCCCCCCCCCHHHHHHHHHHccCCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKE-SLQGAVTLNGEVLES--KLLKIISAYVMQDDLLFPMLTVEETLMFAAEFRLPRS 77 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~-~~~G~I~i~g~~~~~--~~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~~~~ 77 (592)
++|+||||||||||+++|+|+.++. +.+|+|.++|+++.. ...++.++|++|++.+++.+||+||+.+.+...
T Consensus 36 ~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---- 111 (202)
T cd03233 36 VLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAEKYPGEIIYVSEEDVHFPTLTVRETLDFALRCK---- 111 (202)
T ss_pred EEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccchhhhcceEEEEecccccCCCCcHHHHHhhhhhhc----
Confidence 4899999999999999999998742 457999999998753 234567899999999999999999998754210
Q ss_pred CCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 048028 78 VTKTKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVNVLQRI 157 (592)
Q Consensus 78 ~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~l 157 (592)
. +..+..||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++
T Consensus 112 ----------------------~-----~~~~~~LS~Ge~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~ 164 (202)
T cd03233 112 ----------------------G-----NEFVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTM 164 (202)
T ss_pred ----------------------c-----ccchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCccCCHHHHHHHHHHHHHH
Confidence 2 2344569999999999999999999999999999999999999999999999
Q ss_pred HHc-CCEEEEEecCChhHHHhhhceEEEecCCeEeeec
Q 048028 158 AKS-GSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNE 194 (592)
Q Consensus 158 a~~-g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g 194 (592)
+++ +.|+|+++|+...++.+.+|++++|++|++++.|
T Consensus 165 ~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~~G~i~~~g 202 (202)
T cd03233 165 ADVLKTTTFVSLYQASDEIYDLFDKVLVLYEGRQIYYG 202 (202)
T ss_pred HHhCCCEEEEEEcCCHHHHHHhCCeEEEEECCEEEecC
Confidence 875 6777777766544688999999999999998764
No 207
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.7e-36 Score=303.20 Aligned_cols=185 Identities=30% Similarity=0.463 Sum_probs=149.3
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCc---ccccceeEEEccCCCCCCCCCHHHHHHHHHHccCCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLES---KLLKIISAYVMQDDLLFPMLTVEETLMFAAEFRLPRS 77 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~---~~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~~~~ 77 (592)
++|+||||||||||+++|+|+.++ .+|+|.++|+++.. ...++.++|++|++.+++ .||+||+.+....
T Consensus 31 ~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~----- 102 (234)
T cd03251 31 VALVGPSGSGKSTLVNLIPRFYDV--DSGRILIDGHDVRDYTLASLRRQIGLVSQDVFLFN-DTVAENIAYGRPG----- 102 (234)
T ss_pred EEEECCCCCCHHHHHHHHhccccC--CCCEEEECCEEhhhCCHHHHHhhEEEeCCCCeecc-ccHHHHhhccCCC-----
Confidence 489999999999999999999875 45999999988643 234567899999998887 6999999775321
Q ss_pred CCHHHHH-----HHHHHHHHHc--CCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHH
Q 048028 78 VTKTKKQ-----ERVEALINQL--GLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMV 150 (592)
Q Consensus 78 ~~~~~~~-----~~v~~~l~~l--gL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i 150 (592)
....+.. ..+++.++.+ ++++..+. .++.||||||||++||++|+.+|++++|||||+|||+.++..+
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-----~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l 177 (234)
T cd03251 103 ATREEVEEAARAANAHEFIMELPEGYDTVIGE-----RGVKLSGGQRQRIAIARALLKDPPILILDEATSALDTESERLV 177 (234)
T ss_pred CCHHHHHHHHHHcCcHHHHHhcccCcceeecc-----CCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHH
Confidence 1111111 1234555555 55544433 3567999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCEEEEEecCChhHHHhhhceEEEecCCeEeeecChhhHHH
Q 048028 151 VNVLQRIAKSGSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNETPSNLAQ 201 (592)
Q Consensus 151 ~~~l~~la~~g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~~~~~~ 201 (592)
.+.|+++++ ++|||+++|+++ ++.. ||++++|++|+++..|+++++.+
T Consensus 178 ~~~l~~~~~-~~tii~~sh~~~-~~~~-~d~v~~l~~G~i~~~~~~~~~~~ 225 (234)
T cd03251 178 QAALERLMK-NRTTFVIAHRLS-TIEN-ADRIVVLEDGKIVERGTHEELLA 225 (234)
T ss_pred HHHHHHhcC-CCEEEEEecCHH-HHhh-CCEEEEecCCeEeeeCCHHHHHH
Confidence 999999974 899999999997 4654 99999999999999998877643
No 208
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=5.9e-36 Score=290.51 Aligned_cols=156 Identities=45% Similarity=0.754 Sum_probs=137.7
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCcccccceeEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCH
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLESKLLKIISAYVMQDDLLFPMLTVEETLMFAAEFRLPRSVTK 80 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~ 80 (592)
++|+|||||||||||++|+|+.+..+.+|+|.++|+++. ...++.++|++|++.+++.+||+||+.+...+
T Consensus 36 ~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~-~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~-------- 106 (192)
T cd03232 36 TALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLD-KNFQRSTGYVEQQDVHSPNLTVREALRFSALL-------- 106 (192)
T ss_pred EEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehH-HHhhhceEEecccCccccCCcHHHHHHHHHHH--------
Confidence 489999999999999999998642345799999999875 34556789999999999999999999875311
Q ss_pred HHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc
Q 048028 81 TKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVNVLQRIAKS 160 (592)
Q Consensus 81 ~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~la~~ 160 (592)
+ .||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++
T Consensus 107 -----------~------------------~LSgGe~qrv~la~al~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~ 157 (192)
T cd03232 107 -----------R------------------GLSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADS 157 (192)
T ss_pred -----------h------------------cCCHHHhHHHHHHHHHhcCCcEEEEeCCCcCCCHHHHHHHHHHHHHHHHc
Confidence 0 49999999999999999999999999999999999999999999999877
Q ss_pred CCEEEEEecCChhHHHhhhceEEEecC-CeEeeec
Q 048028 161 GSIVIMSIHQPSYRILSLLDRLIILSH-GQSVYNE 194 (592)
Q Consensus 161 g~tvi~~~H~~~~~i~~~~D~v~ll~~-G~~v~~g 194 (592)
|+|+|+++|+++.++.+.+|++++|++ |++++.|
T Consensus 158 ~~tiiivtH~~~~~~~~~~d~i~~l~~~g~i~~~g 192 (192)
T cd03232 158 GQAILCTIHQPSASIFEKFDRLLLLKRGGKTVYFG 192 (192)
T ss_pred CCEEEEEEcCChHHHHhhCCEEEEEcCCCeEEeCC
Confidence 999999999997446789999999999 9999865
No 209
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.5e-36 Score=338.07 Aligned_cols=190 Identities=24% Similarity=0.374 Sum_probs=163.0
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCcc------cccceeEEEccCC--CCCCCCCHHHHHHHHHHc
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLESK------LLKIISAYVMQDD--LLFPMLTVEETLMFAAEF 72 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~~------~~~~~~~yv~Q~~--~l~~~lTV~E~l~f~~~l 72 (592)
++|+||||||||||+|+|+|+.++. +|+|.++|+++... ..++.++||+|++ .+++.+||.|++.+....
T Consensus 353 ~~lvG~nGsGKSTLlk~i~Gl~~p~--~G~I~~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~ 430 (623)
T PRK10261 353 LSLVGESGSGKSTTGRALLRLVESQ--GGEIIFNGQRIDTLSPGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRV 430 (623)
T ss_pred EEEECCCCCCHHHHHHHHHcCCCCC--CcEEEECCEECCcCCHHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHH
Confidence 5899999999999999999998754 59999999987431 2356789999997 589999999999886543
Q ss_pred cCCCCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHH
Q 048028 73 RLPRSVTKTKKQERVEALINQLGLR-SAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVV 151 (592)
Q Consensus 73 ~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~ 151 (592)
+. ...+.+.+++++++++.+||. +..++. +++|||||||||+||++|+.+|++|||||||+|||+.++.+++
T Consensus 431 ~~--~~~~~~~~~~~~~~L~~~gL~~~~~~~~-----~~~LSgGqrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~ 503 (623)
T PRK10261 431 HG--LLPGKAAAARVAWLLERVGLLPEHAWRY-----PHEFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQII 503 (623)
T ss_pred cC--CCCHHHHHHHHHHHHHHcCCCHHHhhCC-----cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHH
Confidence 21 112345567899999999996 455554 4569999999999999999999999999999999999999999
Q ss_pred HHHHHHHHc-CCEEEEEecCChhHHHhhhceEEEecCCeEeeecChhhHH
Q 048028 152 NVLQRIAKS-GSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNETPSNLA 200 (592)
Q Consensus 152 ~~l~~la~~-g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~~~~~ 200 (592)
++|++++++ |.|||++|||++ .+.++|||+++|++|++++.|+++++.
T Consensus 504 ~ll~~l~~~~g~tvi~isHdl~-~v~~~~dri~vl~~G~iv~~g~~~~i~ 552 (623)
T PRK10261 504 NLLLDLQRDFGIAYLFISHDMA-VVERISHRVAVMYLGQIVEIGPRRAVF 552 (623)
T ss_pred HHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEecCHHHHh
Confidence 999999875 899999999997 688999999999999999999998863
No 210
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.4e-35 Score=299.93 Aligned_cols=193 Identities=24% Similarity=0.388 Sum_probs=155.9
Q ss_pred CEEECCCCCcHHHHHHHHhCCCC--CC-CceeEEEECCEecCc-----ccccceeEEEccCCCCCCCCCHHHHHHHHHHc
Q 048028 1 MAILGASGAGKTTLMDALAGRIE--KE-SLQGAVTLNGEVLES-----KLLKIISAYVMQDDLLFPMLTVEETLMFAAEF 72 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~--~~-~~~G~I~i~g~~~~~-----~~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l 72 (592)
++|+||||||||||+++|+|+.+ +. +.+|+|.++|+++.. ...++.++|++|++.+++ .||+||+.+....
T Consensus 34 ~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~ 112 (252)
T PRK14255 34 TALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDVVQLRKQVGMVFQQPNPFP-FSIYENVIYGLRL 112 (252)
T ss_pred EEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccHHHhcCeEEEEECCCccCC-CcHHHHHHHHHHH
Confidence 58999999999999999999864 21 247999999998742 234567899999998888 6999999887543
Q ss_pred cCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHH
Q 048028 73 RLPRSVTKTKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVN 152 (592)
Q Consensus 73 ~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~ 152 (592)
+.. ..++..++++.+.++.+++........ +..++.||||||||++||++|+.+|++|+|||||+|||+.++..+.+
T Consensus 113 ~~~--~~~~~~~~~~~~~l~~~~l~~~i~~~~-~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~ 189 (252)
T PRK14255 113 AGV--KDKAVLDEAVETSLKQAAIWDEVKDHL-HESALSLSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIEN 189 (252)
T ss_pred cCC--CCHHHHHHHHHHHHHHcCCccchhhHH-hcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHH
Confidence 311 122223456778888887742211111 23456799999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCEEEEEecCChhHHHhhhceEEEecCCeEeeecChhhH
Q 048028 153 VLQRIAKSGSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNETPSNL 199 (592)
Q Consensus 153 ~l~~la~~g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~~~~ 199 (592)
.|+++++ +.|+|+++|+++ ++.+.+|++++|++|+++..|++.+.
T Consensus 190 ~l~~~~~-~~tii~vsH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~ 234 (252)
T PRK14255 190 MLLELRD-QYTIILVTHSMH-QASRISDKTAFFLTGNLIEFADTKQM 234 (252)
T ss_pred HHHHHHh-CCEEEEEECCHH-HHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999976 589999999997 58889999999999999999988765
No 211
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=100.00 E-value=1e-36 Score=343.68 Aligned_cols=187 Identities=32% Similarity=0.531 Sum_probs=158.1
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCc---ccccceeEEEccCCCCCCCCCHHHHHHHHHHccCCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLES---KLLKIISAYVMQDDLLFPMLTVEETLMFAAEFRLPRS 77 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~---~~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~~~~ 77 (592)
+||+|+||||||||+|+|+|+++|. +|+|.+||.+++. ...|+.+|||+||+.+|.. |++||+.++. | .
T Consensus 502 vaIvG~SGsGKSTL~KLL~gly~p~--~G~I~~dg~dl~~i~~~~lR~~ig~V~Q~~~Lf~g-SI~eNi~l~~----p-~ 573 (709)
T COG2274 502 VAIVGRSGSGKSTLLKLLLGLYKPQ--QGRILLDGVDLNDIDLASLRRQVGYVLQDPFLFSG-SIRENIALGN----P-E 573 (709)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCCC--CceEEECCEeHHhcCHHHHHhheeEEcccchhhcC-cHHHHHhcCC----C-C
Confidence 5899999999999999999999864 5999999998754 5688999999999999987 9999998753 1 2
Q ss_pred CCHHHHHH-----HHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHH
Q 048028 78 VTKTKKQE-----RVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVN 152 (592)
Q Consensus 78 ~~~~~~~~-----~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~ 152 (592)
.+.++..+ .+++.+. .+..-.||.+|+ ...+||||||||++|||+|+++|+||+||||||+||+.+.+.+.+
T Consensus 574 ~~~e~i~~A~~~ag~~~fI~--~lP~gy~t~v~E-~G~~LSGGQrQrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~ 650 (709)
T COG2274 574 ATDEEIIEAAQLAGAHEFIE--NLPMGYDTPVGE-GGANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQ 650 (709)
T ss_pred CCHHHHHHHHHHhCcHHHHH--hccccccccccc-CCCCCCHHHHHHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHH
Confidence 23222211 1222222 344567888874 667899999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCEEEEEecCChhHHHhhhceEEEecCCeEeeecChhhHHH
Q 048028 153 VLQRIAKSGSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNETPSNLAQ 201 (592)
Q Consensus 153 ~l~~la~~g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~~~~~~ 201 (592)
.|+++.+ |+|+|+++|.++ ..+.|||+++|++|+++.+|+.+|+.+
T Consensus 651 ~L~~~~~-~~T~I~IaHRl~--ti~~adrIiVl~~Gkiv~~gs~~ell~ 696 (709)
T COG2274 651 NLLQILQ-GRTVIIIAHRLS--TIRSADRIIVLDQGKIVEQGSHEELLA 696 (709)
T ss_pred HHHHHhc-CCeEEEEEccch--HhhhccEEEEccCCceeccCCHHHHHH
Confidence 9999864 799999999996 678999999999999999999999865
No 212
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.7e-36 Score=305.76 Aligned_cols=190 Identities=23% Similarity=0.404 Sum_probs=155.1
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCcccccceeEEEccCCCCC--CCCCHHHHHHHHHHccCC-CC
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLESKLLKIISAYVMQDDLLF--PMLTVEETLMFAAEFRLP-RS 77 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~~~~~~~~~yv~Q~~~l~--~~lTV~E~l~f~~~l~~~-~~ 77 (592)
++|+||||||||||||+|+|+.+|. +|+|.++|+++.....++.++|++|++.+. ...+++|++.++...... ..
T Consensus 36 ~~l~G~nGsGKSTLl~~l~Gl~~p~--~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 113 (272)
T PRK15056 36 AALVGVNGSGKSTLFKALMGFVRLA--SGKISILGQPTRQALQKNLVAYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLR 113 (272)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCCC--ceEEEECCEEhHHhhccceEEEeccccccccCCCcchhhheeccccccccccc
Confidence 5899999999999999999998754 599999999875432334589999997652 234789988654211000 01
Q ss_pred CCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 048028 78 VTKTKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVNVLQRI 157 (592)
Q Consensus 78 ~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~l 157 (592)
....+.+++++++++.+||.+..++.++ .||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++
T Consensus 114 ~~~~~~~~~~~~~l~~~gl~~~~~~~~~-----~LSgG~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~L~~~ 188 (272)
T PRK15056 114 RAKKRDRQIVTAALARVDMVEFRHRQIG-----ELSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLREL 188 (272)
T ss_pred CCCHHHHHHHHHHHHHcCChhHhcCCcc-----cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHH
Confidence 1223345678889999999887776654 59999999999999999999999999999999999999999999999
Q ss_pred HHcCCEEEEEecCChhHHHhhhceEEEecCCeEeeecChhhH
Q 048028 158 AKSGSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNETPSNL 199 (592)
Q Consensus 158 a~~g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~~~~ 199 (592)
+++|+|||+++|+++ ++.++||+++++ +|+++..|+++++
T Consensus 189 ~~~g~tviivsH~~~-~~~~~~d~v~~~-~G~i~~~g~~~~~ 228 (272)
T PRK15056 189 RDEGKTMLVSTHNLG-SVTEFCDYTVMV-KGTVLASGPTETT 228 (272)
T ss_pred HhCCCEEEEEeCCHH-HHHHhCCEEEEE-CCEEEeecCHHhc
Confidence 878999999999997 688999999887 8999999988765
No 213
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.4e-35 Score=310.42 Aligned_cols=193 Identities=21% Similarity=0.324 Sum_probs=161.8
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCC---CCceeEEEECCEecCc-----ccccceeEEEccCCCCCCCCCHHHHHHHHHHc
Q 048028 1 MAILGASGAGKTTLMDALAGRIEK---ESLQGAVTLNGEVLES-----KLLKIISAYVMQDDLLFPMLTVEETLMFAAEF 72 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~---~~~~G~I~i~g~~~~~-----~~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l 72 (592)
+||+|||||||||||++|+|..++ .+.+|+|.++|+++.. ...++.++||+|++.+++ .|++||+.|+...
T Consensus 111 v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~~~~~lr~~i~~v~q~~~~~~-~ti~eNi~~~~~~ 189 (329)
T PRK14257 111 TAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKISSLELRTRIGMVFQKPTPFE-MSIFDNVAYGPRN 189 (329)
T ss_pred EEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHhhhccEEEEecCCccCC-CcHHHHHHhHHHh
Confidence 589999999999999999999753 1357999999999852 235677999999999886 6999999987543
Q ss_pred cCCCCCCHH-HHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHH
Q 048028 73 RLPRSVTKT-KKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVV 151 (592)
Q Consensus 73 ~~~~~~~~~-~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~ 151 (592)
. ..++. ..++.++++++.++|.+..++.++ +.+..||||||||++|||||+.+|+||+|||||+|||+.+...+.
T Consensus 190 ~---~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~-~~~~~LSgGqkqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~ 265 (329)
T PRK14257 190 N---GINDRKILEKIVEKSLKSAALWDEVKDDLD-KAGNALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIE 265 (329)
T ss_pred c---CCChHHHHHHHHHHHHHHcCCcchhhhhhh-CCcccCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHH
Confidence 2 12222 234557889999988654444443 467789999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCEEEEEecCChhHHHhhhceEEEecCCeEeeecChhhHH
Q 048028 152 NVLQRIAKSGSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNETPSNLA 200 (592)
Q Consensus 152 ~~l~~la~~g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~~~~~ 200 (592)
+.|+++++ ++|+|+++|++. .+.+.+||+++|++|+++..|+++++.
T Consensus 266 ~~i~~l~~-~~Tii~iTH~l~-~i~~~~Driivl~~G~i~e~g~~~~l~ 312 (329)
T PRK14257 266 ELILELKK-KYSIIIVTHSMA-QAQRISDETVFFYQGWIEEAGETKTIF 312 (329)
T ss_pred HHHHHHhc-CCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 99999976 699999999997 588889999999999999999998873
No 214
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.4e-35 Score=305.09 Aligned_cols=191 Identities=23% Similarity=0.402 Sum_probs=156.4
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCC---CCceeEEEECCEecCc-----ccccceeEEEccCCCCCCCCCHHHHHHHHHHc
Q 048028 1 MAILGASGAGKTTLMDALAGRIEK---ESLQGAVTLNGEVLES-----KLLKIISAYVMQDDLLFPMLTVEETLMFAAEF 72 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~---~~~~G~I~i~g~~~~~-----~~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l 72 (592)
++|+|||||||||||++|+|+.++ .+.+|+|.++|+++.. ...++.++|++|++.+++. ||+||+.+....
T Consensus 68 ~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~ 146 (285)
T PRK14254 68 TAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVDPVALRRRIGMVFQKPNPFPK-SIYDNVAYGLKI 146 (285)
T ss_pred EEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccchHhhhccEEEEecCCccCcC-CHHHHHHHHHHH
Confidence 489999999999999999999863 1357999999998642 2345678999999988886 999999887654
Q ss_pred cCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHH
Q 048028 73 RLPRSVTKTKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVN 152 (592)
Q Consensus 73 ~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~ 152 (592)
+. .+. +.+++++++++.+|+.+...... +..+..|||||||||+||++|+.+|++|||||||+|||+.++..+.+
T Consensus 147 ~~---~~~-~~~~~~~~~l~~~~l~~~i~~~~-~~~~~~LSgGe~qrv~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~ 221 (285)
T PRK14254 147 QG---YDG-DIDERVEESLRRAALWDEVKDQL-DSSGLDLSGGQQQRLCIARAIAPDPEVILMDEPASALDPVATSKIED 221 (285)
T ss_pred cC---CcH-HHHHHHHHHHHHcCCCchhHHHH-hCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHH
Confidence 31 222 34567899999999853211111 23456799999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCEEEEEecCChhHHHhhhceEE-EecCCeEeeecChhhH
Q 048028 153 VLQRIAKSGSIVIMSIHQPSYRILSLLDRLI-ILSHGQSVYNETPSNL 199 (592)
Q Consensus 153 ~l~~la~~g~tvi~~~H~~~~~i~~~~D~v~-ll~~G~~v~~g~~~~~ 199 (592)
.|++++++ +|||+++|+++ ++.+++||++ +|++|+++..|+++++
T Consensus 222 ~L~~~~~~-~tiii~tH~~~-~i~~~~dri~v~l~~G~i~~~g~~~~~ 267 (285)
T PRK14254 222 LIEELAEE-YTVVIVTHNMQ-QAARISDKTAVFLTGGELVEFDDTDKI 267 (285)
T ss_pred HHHHHhcC-CEEEEEeCCHH-HHHhhcCEEEEEeeCCEEEEeCCHHHH
Confidence 99999864 79999999997 6888999975 6799999999988765
No 215
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=2.6e-36 Score=340.93 Aligned_cols=183 Identities=28% Similarity=0.449 Sum_probs=155.4
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCc---ccccceeEEEccCCCCCCCCCHHHHHHHHHHccCCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLES---KLLKIISAYVMQDDLLFPMLTVEETLMFAAEFRLPRS 77 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~---~~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~~~~ 77 (592)
+||+||||||||||+++|+|+. |. +|+|.+||+++.+ ..+|+.++||+|++.+|+. |++||+.++. | +
T Consensus 379 vaIvG~SGsGKSTL~~lL~g~~-p~--~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~~-TI~eNI~~g~----~-~ 449 (588)
T PRK11174 379 IALVGPSGAGKTSLLNALLGFL-PY--QGSLKINGIELRELDPESWRKHLSWVGQNPQLPHG-TLRDNVLLGN----P-D 449 (588)
T ss_pred EEEECCCCCCHHHHHHHHhcCC-CC--CcEEEECCEecccCCHHHHHhheEEecCCCcCCCc-CHHHHhhcCC----C-C
Confidence 5899999999999999999998 54 5999999998754 4567889999999999987 9999998752 1 2
Q ss_pred CCHHHHHHHHHHHHHHcCC-------cccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHH
Q 048028 78 VTKTKKQERVEALINQLGL-------RSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMV 150 (592)
Q Consensus 78 ~~~~~~~~~v~~~l~~lgL-------~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i 150 (592)
.++ ++++++++..++ ++-.||.+|+. ...||||||||++|||||+++|++|+||||||+||+.++..+
T Consensus 450 ~~~----eei~~al~~a~l~~~i~~lp~G~dT~vge~-G~~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i 524 (588)
T PRK11174 450 ASD----EQLQQALENAWVSEFLPLLPQGLDTPIGDQ-AAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLV 524 (588)
T ss_pred CCH----HHHHHHHHHhCHHHHHHhcccccccccccC-CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHH
Confidence 333 334444554444 34568889864 567999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCEEEEEecCChhHHHhhhceEEEecCCeEeeecChhhHH
Q 048028 151 VNVLQRIAKSGSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNETPSNLA 200 (592)
Q Consensus 151 ~~~l~~la~~g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~~~~~ 200 (592)
.+.|+++. +++|+|+++|+++ ..+.+|+|++|++|+++..|+.+++.
T Consensus 525 ~~~l~~~~-~~~TvIiItHrl~--~i~~aD~Iivl~~G~i~e~G~~~eL~ 571 (588)
T PRK11174 525 MQALNAAS-RRQTTLMVTHQLE--DLAQWDQIWVMQDGQIVQQGDYAELS 571 (588)
T ss_pred HHHHHHHh-CCCEEEEEecChH--HHHhCCEEEEEeCCeEeecCCHHHHH
Confidence 99999985 4799999999996 46779999999999999999998874
No 216
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.1e-36 Score=283.37 Aligned_cols=188 Identities=30% Similarity=0.473 Sum_probs=160.8
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCcc---cccceeEEEccCCCCCCCCCHHHHHHHHHHccCCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLESK---LLKIISAYVMQDDLLFPMLTVEETLMFAAEFRLPRS 77 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~~---~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~~~~ 77 (592)
+||+||||||||||||.|+|.+.|+ +|++.+||.+++.. ...+..+.++|+..+-...||+|-+.++. .|..
T Consensus 30 ~ailGPNGAGKSTlLk~LsGel~p~--~G~v~~~g~~l~~~~~~~lA~~raVlpQ~s~laFpFtv~eVV~mGr---~p~~ 104 (259)
T COG4559 30 LAILGPNGAGKSTLLKALSGELSPD--SGEVTLNGVPLNSWPPEELARHRAVLPQNSSLAFPFTVQEVVQMGR---IPHR 104 (259)
T ss_pred EEEECCCCccHHHHHHHhhCccCCC--CCeEeeCCcChhhCCHHHHHHHhhhcccCcccccceEHHHHHHhcc---cccc
Confidence 4899999999999999999998864 59999999988653 34456689999987755569999999884 3432
Q ss_pred CCH--HHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhh------CCcEEEEeCCCCCCCHHHHHH
Q 048028 78 VTK--TKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIH------DPILLFLDEPTSGLDSTSAFM 149 (592)
Q Consensus 78 ~~~--~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~------~p~lllLDEPtsgLD~~~~~~ 149 (592)
... .+..+.+++.|...++.+.+... .+.|||||||||.+||.|.. ++++||||||||.||...++.
T Consensus 105 ~g~~~~e~~~i~~~ala~~d~~~la~R~-----y~~LSGGEqQRVqlARvLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~ 179 (259)
T COG4559 105 SGREPEEDERIAAQALAATDLSGLAGRD-----YRTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHH 179 (259)
T ss_pred cCCCchhhHHHHHHHHHHcChhhhhccc-----hhhcCchHHHHHHHHHHHHHccCCCCCCceEEecCCccccchHHHHH
Confidence 222 25566788999999999887543 45799999999999999975 456999999999999999999
Q ss_pred HHHHHHHHHHcCCEEEEEecCChhHHHhhhceEEEecCCeEeeecChhhH
Q 048028 150 VVNVLQRIAKSGSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNETPSNL 199 (592)
Q Consensus 150 i~~~l~~la~~g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~~~~ 199 (592)
++++.++++++|..|+++.||.+ -...+||||++|++||++..|+|+++
T Consensus 180 tl~laR~la~~g~~V~~VLHDLN-LAA~YaDrivll~~Grv~a~g~p~~v 228 (259)
T COG4559 180 TLRLARQLAREGGAVLAVLHDLN-LAAQYADRIVLLHQGRVIASGSPQDV 228 (259)
T ss_pred HHHHHHHHHhcCCcEEEEEccch-HHHHhhheeeeeeCCeEeecCCHHHh
Confidence 99999999999999999999998 47889999999999999999999886
No 217
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=100.00 E-value=1.1e-35 Score=289.22 Aligned_cols=155 Identities=55% Similarity=0.901 Sum_probs=138.5
Q ss_pred CEEECCCCCcHHHHHHHHhCCC--CCCCceeEEEECCEecCcccccceeEEEccCCCCCCCCCHHHHHHHHHHccCCCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRI--EKESLQGAVTLNGEVLESKLLKIISAYVMQDDLLFPMLTVEETLMFAAEFRLPRSV 78 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~--~~~~~~G~I~i~g~~~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~~~~~ 78 (592)
++|+||||||||||+++|+|+. ++ .+|+|.++|+++.....++.++|++|++.+++.+|++||+.+..+++
T Consensus 38 ~~l~G~nGsGKStLl~~i~Gl~~~~~--~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~i~~~~~~~----- 110 (194)
T cd03213 38 TAIMGPSGAGKSTLLNALAGRRTGLG--VSGEVLINGRPLDKRSFRKIIGYVPQDDILHPTLTVRETLMFAAKLR----- 110 (194)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCCCC--CceEEEECCEeCchHhhhheEEEccCcccCCCCCcHHHHHHHHHHhc-----
Confidence 4899999999999999999998 64 46999999998865455677899999999999999999997643210
Q ss_pred CHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 048028 79 TKTKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVNVLQRIA 158 (592)
Q Consensus 79 ~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~la 158 (592)
.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++
T Consensus 111 --------------------------------~LS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~ 158 (194)
T cd03213 111 --------------------------------GLSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLA 158 (194)
T ss_pred --------------------------------cCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHH
Confidence 399999999999999999999999999999999999999999999998
Q ss_pred HcCCEEEEEecCChhHHHhhhceEEEecCCeEeeec
Q 048028 159 KSGSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNE 194 (592)
Q Consensus 159 ~~g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g 194 (592)
++|+|+|+++|+++.++.+.+|++++|++|++++.|
T Consensus 159 ~~~~tiii~sh~~~~~~~~~~d~v~~l~~G~i~~~~ 194 (194)
T cd03213 159 DTGRTIICSIHQPSSEIFELFDKLLLLSQGRVIYFG 194 (194)
T ss_pred hCCCEEEEEecCchHHHHHhcCEEEEEeCCEEEecC
Confidence 779999999999965678899999999999998754
No 218
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=100.00 E-value=1.5e-35 Score=300.02 Aligned_cols=189 Identities=24% Similarity=0.393 Sum_probs=154.9
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEe-----cCcc-------cccceeEEEccCCC--CCCCCCHHHHH
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEV-----LESK-------LLKIISAYVMQDDL--LFPMLTVEETL 66 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~-----~~~~-------~~~~~~~yv~Q~~~--l~~~lTV~E~l 66 (592)
++|+|||||||||||++|+|+.++. +|+|.++|++ +... ..++.++|++|++. +++.+|+.||+
T Consensus 32 ~~i~G~nGsGKSTLl~~l~G~~~~~--~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~i 109 (253)
T TIGR02323 32 LGIVGESGSGKSTLLGCLAGRLAPD--HGTATYIMRSGAELELYQLSEAERRRLMRTEWGFVHQNPRDGLRMRVSAGANI 109 (253)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCCC--CcEEEEecccccccccccCCHHHHHHhhhcceEEEEeCcccccCccccHHHHH
Confidence 4899999999999999999998754 5999999976 4321 12345899999974 55677999998
Q ss_pred HHHHHccCCCCCCHHHHHHHHHHHHHHcCCcc-cccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHH
Q 048028 67 MFAAEFRLPRSVTKTKKQERVEALINQLGLRS-AAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDST 145 (592)
Q Consensus 67 ~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~ 145 (592)
.+..... . .....+.+++++++++.+|+.+ ..++. ++.|||||||||+||++|+.+|++|+|||||+|||+.
T Consensus 110 ~~~~~~~-~-~~~~~~~~~~~~~~l~~l~l~~~~~~~~-----~~~LSgG~~qrv~laral~~~p~vlllDEP~~~LD~~ 182 (253)
T TIGR02323 110 GERLMAI-G-ARHYGNIRAAAHDWLEEVEIDPTRIDDL-----PRAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVS 182 (253)
T ss_pred HHHHHHh-c-ccchHHHHHHHHHHHHHcCCChhhhhcC-----chhcCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHH
Confidence 7643211 0 1112234567889999999963 55544 4569999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHc-CCEEEEEecCChhHHHhhhceEEEecCCeEeeecChhhH
Q 048028 146 SAFMVVNVLQRIAKS-GSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNETPSNL 199 (592)
Q Consensus 146 ~~~~i~~~l~~la~~-g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~~~~ 199 (592)
++..+.+.|++++++ |.|+|+++|++. ++.+.+|++++|++|+++..|+++++
T Consensus 183 ~~~~l~~~l~~~~~~~~~tii~vsH~~~-~~~~~~d~~~~l~~G~i~~~~~~~~~ 236 (253)
T TIGR02323 183 VQARLLDLLRGLVRDLGLAVIIVTHDLG-VARLLAQRLLVMQQGRVVESGLTDQV 236 (253)
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEECCEEEEECCHHHH
Confidence 999999999998764 899999999987 58889999999999999999988765
No 219
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.5e-35 Score=299.45 Aligned_cols=193 Identities=21% Similarity=0.356 Sum_probs=159.4
Q ss_pred CEEECCCCCcHHHHHHHHhCCCC--CC-CceeEEEECCEecCc-----ccccceeEEEccCCCCCCCCCHHHHHHHHHHc
Q 048028 1 MAILGASGAGKTTLMDALAGRIE--KE-SLQGAVTLNGEVLES-----KLLKIISAYVMQDDLLFPMLTVEETLMFAAEF 72 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~--~~-~~~G~I~i~g~~~~~-----~~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l 72 (592)
++|+||||||||||+++|+|+.+ +. +.+|+|.+||+++.. ...++.++|++|++.+++. |+.||+.+....
T Consensus 32 ~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~~~-t~~~nl~~~~~~ 110 (250)
T PRK14266 32 TALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDVVELRKKVGMVFQKPNPFPK-SIFDNVAYGLRI 110 (250)
T ss_pred EEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccHHHHhhheEEEecCCccCcc-hHHHHHHhHHhh
Confidence 48999999999999999999864 21 257999999998743 1345678999999998885 999999876532
Q ss_pred cCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHH
Q 048028 73 RLPRSVTKTKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVN 152 (592)
Q Consensus 73 ~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~ 152 (592)
.. ..+.+..++++.++++.+|+.+...... +..++.||||||||++||++|+.+|++|+|||||+|||+.++..+.+
T Consensus 111 ~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~-~~~~~~LS~Gq~qrv~laral~~~p~llllDEP~~gLD~~~~~~l~~ 187 (250)
T PRK14266 111 HG--EDDEDFIEERVEESLKAAALWDEVKDKL-DKSALGLSGGQQQRLCIARTIAVSPEVILMDEPCSALDPISTTKIED 187 (250)
T ss_pred cC--CCCHHHHHHHHHHHHHHcCCchhHHHHH-hCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHH
Confidence 21 1123345677889999999854322222 34566799999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCEEEEEecCChhHHHhhhceEEEecCCeEeeecChhhH
Q 048028 153 VLQRIAKSGSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNETPSNL 199 (592)
Q Consensus 153 ~l~~la~~g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~~~~ 199 (592)
.|+++++ ++|||+++|++. ++...+|++++|++|++++.|+++++
T Consensus 188 ~l~~~~~-~~tiii~sh~~~-~~~~~~~~i~~l~~G~i~~~g~~~~~ 232 (250)
T PRK14266 188 LIHKLKE-DYTIVIVTHNMQ-QATRVSKYTSFFLNGEIIESGLTDQI 232 (250)
T ss_pred HHHHHhc-CCeEEEEECCHH-HHHhhcCEEEEEECCeEEEeCCHHHH
Confidence 9999964 789999999997 68899999999999999999998876
No 220
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=3.2e-34 Score=328.68 Aligned_cols=187 Identities=30% Similarity=0.521 Sum_probs=156.9
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCc---ccccceeEEEccCCCCCCCCCHHHHHHHHHHccCCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLES---KLLKIISAYVMQDDLLFPMLTVEETLMFAAEFRLPRS 77 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~---~~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~~~~ 77 (592)
+||+|||||||||++++|.++++|. +|+|.+||.++.. +..|+.+|.|.|+|.+|.. |++||+.|+. .+
T Consensus 382 valVG~SGsGKST~i~LL~RfydP~--~G~V~idG~di~~~~~~~lr~~iglV~QePvlF~~-tI~eNI~~G~-----~d 453 (1228)
T KOG0055|consen 382 VALVGPSGSGKSTLIQLLARFYDPT--SGEVLIDGEDIRNLNLKWLRSQIGLVSQEPVLFAT-TIRENIRYGK-----PD 453 (1228)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCC--CceEEEcCccchhcchHHHHhhcCeeeechhhhcc-cHHHHHhcCC-----Cc
Confidence 5899999999999999999998864 5999999998864 4567889999999988875 9999998862 12
Q ss_pred CCHHHHHHHH-----HHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHH
Q 048028 78 VTKTKKQERV-----EALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVN 152 (592)
Q Consensus 78 ~~~~~~~~~v-----~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~ 152 (592)
.++++..+.. .+.+ ..|.+-.||.+|+..+. ||||||||++|||||+.+|+|||||||||+||+.+...+.+
T Consensus 454 at~~~i~~a~k~ana~~fi--~~lp~g~~T~vge~g~q-LSGGQKQRIAIARalv~~P~ILLLDEaTSaLD~~se~~Vq~ 530 (1228)
T KOG0055|consen 454 ATREEIEEAAKAANAHDFI--LKLPDGYDTLVGERGVQ-LSGGQKQRIAIARALVRNPKILLLDEATSALDAESERVVQE 530 (1228)
T ss_pred ccHHHHHHHHHHccHHHHH--HhhHHhhcccccCCCCC-CChHHHHHHHHHHHHHhCCCEEEecCcccccCHHHHHHHHH
Confidence 2333322211 1222 35667789999986654 99999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCEEEEEecCChhHHHhhhceEEEecCCeEeeecChhhHHH
Q 048028 153 VLQRIAKSGSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNETPSNLAQ 201 (592)
Q Consensus 153 ~l~~la~~g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~~~~~~ 201 (592)
.|+++. +|+|.|+++|+.+ .+.+ +|++++|++|++++.|+++|+.+
T Consensus 531 ALd~~~-~grTTivVaHRLS-tIrn-aD~I~v~~~G~IvE~G~h~ELi~ 576 (1228)
T KOG0055|consen 531 ALDKAS-KGRTTIVVAHRLS-TIRN-ADKIAVMEEGKIVEQGTHDELIA 576 (1228)
T ss_pred HHHHhh-cCCeEEEEeeehh-hhhc-cCEEEEEECCEEEEecCHHHHHh
Confidence 998875 4899999999997 4655 99999999999999999999864
No 221
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=100.00 E-value=2.6e-35 Score=298.04 Aligned_cols=194 Identities=22% Similarity=0.293 Sum_probs=156.1
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCcc---cccc-eeEEEccCCCCCCCCCHHHHHHHHHHccCC-
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLESK---LLKI-ISAYVMQDDLLFPMLTVEETLMFAAEFRLP- 75 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~~---~~~~-~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~~- 75 (592)
++|+||||||||||+++|+|+....+.+|+|.++|.++... ..++ .++|++|++.+++.+|+.|++.+.......
T Consensus 36 ~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~ 115 (252)
T CHL00131 36 HAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEERAHLGIFLAFQYPIEIPGVSNADFLRLAYNSKRKF 115 (252)
T ss_pred EEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCChhhhheeeEEEEeccccccccccHHHHHHHhhhhhhcc
Confidence 58999999999999999999732123569999999987542 1222 378999999999999999999875432110
Q ss_pred ---CCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHH
Q 048028 76 ---RSVTKTKKQERVEALINQLGLR-SAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVV 151 (592)
Q Consensus 76 ---~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~ 151 (592)
......+..++++++++.+|+. +..++.++ .+|||||||||+||++|+.+|++++|||||+|||+.++..+.
T Consensus 116 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~----~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~ 191 (252)
T CHL00131 116 QGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVN----EGFSGGEKKRNEILQMALLDSELAILDETDSGLDIDALKIIA 191 (252)
T ss_pred cccccccHHHHHHHHHHHHHHcCCchhhhccccc----cCCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHH
Confidence 0112223346788999999997 34544432 259999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCEEEEEecCChhHHHhh-hceEEEecCCeEeeecChhhH
Q 048028 152 NVLQRIAKSGSIVIMSIHQPSYRILSL-LDRLIILSHGQSVYNETPSNL 199 (592)
Q Consensus 152 ~~l~~la~~g~tvi~~~H~~~~~i~~~-~D~v~ll~~G~~v~~g~~~~~ 199 (592)
+.|++++++|+|||+++|+++ .+... +|++++|++|++++.|+++.+
T Consensus 192 ~~l~~~~~~g~tii~~tH~~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~ 239 (252)
T CHL00131 192 EGINKLMTSENSIILITHYQR-LLDYIKPDYVHVMQNGKIIKTGDAELA 239 (252)
T ss_pred HHHHHHHhCCCEEEEEecCHH-HHHhhhCCEEEEEeCCEEEEecChhhh
Confidence 999999877999999999987 46565 899999999999999998744
No 222
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.6e-35 Score=302.68 Aligned_cols=193 Identities=22% Similarity=0.365 Sum_probs=155.5
Q ss_pred CEEECCCCCcHHHHHHHHhCCCC--C-CCceeEEEECCEecCc-----ccccceeEEEccCCCCCCCCCHHHHHHHHHHc
Q 048028 1 MAILGASGAGKTTLMDALAGRIE--K-ESLQGAVTLNGEVLES-----KLLKIISAYVMQDDLLFPMLTVEETLMFAAEF 72 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~--~-~~~~G~I~i~g~~~~~-----~~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l 72 (592)
++|+|+||||||||+++|+|+.+ + .+.+|+|.++|+++.. ...++.++|++|++.+++. ||+||+.+....
T Consensus 53 ~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~eni~~~~~~ 131 (271)
T PRK14238 53 TAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSVEELRTNVGMVFQKPNPFPK-SIYDNVTYGPKI 131 (271)
T ss_pred EEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccccHHHHhhhEEEEecCCccccc-cHHHHHHHHHHh
Confidence 58999999999999999999976 2 1357999999998742 2345678999999988874 999999987543
Q ss_pred cCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHH
Q 048028 73 RLPRSVTKTKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVN 152 (592)
Q Consensus 73 ~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~ 152 (592)
+. ..++...++.+.++++.+++.+...... +..++.||||||||++||++|+.+|++|+|||||+|||+.++..+.+
T Consensus 132 ~~--~~~~~~~~~~~~~~l~~~~~~~~l~~~~-~~~~~~LSgGe~qrv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~ 208 (271)
T PRK14238 132 HG--IKDKKTLDEIVEKSLRGAAIWDELKDRL-HDNAYGLSGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEE 208 (271)
T ss_pred cC--CCcHHHHHHHHHHHHHHcCCcchHHHHH-hcCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHH
Confidence 21 1122233456778888776532111111 23456799999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCEEEEEecCChhHHHhhhceEEEecCCeEeeecChhhH
Q 048028 153 VLQRIAKSGSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNETPSNL 199 (592)
Q Consensus 153 ~l~~la~~g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~~~~ 199 (592)
.|+++++ ++|||+++|+++ ++.+++|++++|++|+++..|+++++
T Consensus 209 ~l~~~~~-~~tiiivsH~~~-~i~~~~d~i~~l~~G~i~~~g~~~~~ 253 (271)
T PRK14238 209 LVQELKK-DYSIIIVTHNMQ-QAARISDKTAFFLNGYVNEYDDTDKI 253 (271)
T ss_pred HHHHHHc-CCEEEEEEcCHH-HHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999976 789999999997 58889999999999999999998765
No 223
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=100.00 E-value=3e-36 Score=302.30 Aligned_cols=185 Identities=30% Similarity=0.470 Sum_probs=146.1
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCc---ccccceeEEEccCCCCCCCCCHHHHHHHHHHccCCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLES---KLLKIISAYVMQDDLLFPMLTVEETLMFAAEFRLPRS 77 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~---~~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~~~~ 77 (592)
++|+||||||||||+++|+|+.++ .+|+|.++|.++.. ...++.++|++|++.+++ .||+||+.+....+
T Consensus 32 ~~l~G~nGsGKSTLl~~i~G~~~~--~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~---- 104 (238)
T cd03249 32 VALVGSSGCGKSTVVSLLERFYDP--TSGEILLDGVDIRDLNLRWLRSQIGLVSQEPVLFD-GTIAENIRYGKPDA---- 104 (238)
T ss_pred EEEEeCCCCCHHHHHHHHhccCCC--CCCEEEECCEehhhcCHHHHHhhEEEECCchhhhh-hhHHHHhhccCCCC----
Confidence 589999999999999999999875 46999999988643 233456899999998886 59999997743211
Q ss_pred CCHHHHHH-----HHHHHHHHc--CCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHH
Q 048028 78 VTKTKKQE-----RVEALINQL--GLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMV 150 (592)
Q Consensus 78 ~~~~~~~~-----~v~~~l~~l--gL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i 150 (592)
..++..+ .+.++++.+ ++.... +..++.|||||||||+||++|+.+|++++|||||+|||+.++..+
T Consensus 105 -~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~gLD~~~~~~l 178 (238)
T cd03249 105 -TDEEVEEAAKKANIHDFIMSLPDGYDTLV-----GERGSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKLV 178 (238)
T ss_pred -CHHHHHHHHHHcChHHHHHhhccccceee-----ccCCccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHH
Confidence 1111111 112223333 333222 234567999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCEEEEEecCChhHHHhhhceEEEecCCeEeeecChhhHHH
Q 048028 151 VNVLQRIAKSGSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNETPSNLAQ 201 (592)
Q Consensus 151 ~~~l~~la~~g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~~~~~~ 201 (592)
.+.|++++ +|+|||+++|+++ ++. .||++++|++|++++.|+.+++.+
T Consensus 179 ~~~l~~~~-~g~~vi~~sh~~~-~~~-~~d~v~~l~~G~i~~~~~~~~~~~ 226 (238)
T cd03249 179 QEALDRAM-KGRTTIVIAHRLS-TIR-NADLIAVLQNGQVVEQGTHDELMA 226 (238)
T ss_pred HHHHHHhc-CCCEEEEEeCCHH-HHh-hCCEEEEEECCEEEEeCCHHHHhh
Confidence 99999997 7899999999997 464 899999999999999998877644
No 224
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.3e-35 Score=328.94 Aligned_cols=187 Identities=24% Similarity=0.380 Sum_probs=158.9
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCcc----cccceeEEEccCCCCCCCCCHHHHHHHHHHccCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLESK----LLKIISAYVMQDDLLFPMLTVEETLMFAAEFRLPR 76 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~~----~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~~~ 76 (592)
++|+||||||||||||+|+|+.++. +|+|.++|+++... ..++.++|++|++.+++.+||+||+.+........
T Consensus 33 ~~l~G~nGsGKSTLl~~l~Gl~~p~--~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~ 110 (501)
T PRK11288 33 HALMGENGAGKSTLLKILSGNYQPD--AGSILIDGQEMRFASTTAALAAGVAIIYQELHLVPEMTVAENLYLGQLPHKGG 110 (501)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCCC--CCEEEECCEECCCCCHHHHHhCCEEEEEechhccCCCCHHHHHHhcccccccC
Confidence 4899999999999999999998754 59999999987531 23567899999999999999999998854211111
Q ss_pred CCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHH
Q 048028 77 SVTKTKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVNVLQR 156 (592)
Q Consensus 77 ~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~ 156 (592)
.....+.+++++++++.+||.+..++.+ ..|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|++
T Consensus 111 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~ 185 (501)
T PRK11288 111 IVNRRLLNYEAREQLEHLGVDIDPDTPL-----KYLSIGQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRE 185 (501)
T ss_pred CCCHHHHHHHHHHHHHHcCCCCCcCCch-----hhCCHHHHHHHHHHHHHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHH
Confidence 1234455678899999999987666554 46999999999999999999999999999999999999999999999
Q ss_pred HHHcCCEEEEEecCChhHHHhhhceEEEecCCeEeeecC
Q 048028 157 IAKSGSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNET 195 (592)
Q Consensus 157 la~~g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~ 195 (592)
++++|+|||+++|+++ ++.++|||+++|++|+++..++
T Consensus 186 ~~~~g~tiiiitHd~~-~~~~~~d~i~~l~~G~i~~~~~ 223 (501)
T PRK11288 186 LRAEGRVILYVSHRME-EIFALCDAITVFKDGRYVATFD 223 (501)
T ss_pred HHhCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEeecC
Confidence 9888999999999997 6889999999999999987664
No 225
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.4e-35 Score=299.14 Aligned_cols=195 Identities=23% Similarity=0.373 Sum_probs=156.6
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCC----ceeEEEECCEecCc---ccccceeEEEccCCCCCCCCCHHHHHHHHHHcc
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKES----LQGAVTLNGEVLES---KLLKIISAYVMQDDLLFPMLTVEETLMFAAEFR 73 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~----~~G~I~i~g~~~~~---~~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~ 73 (592)
++|+||||||||||+++|+|..++.. ..|++.++|+++.. ...++.++|++|++.+++.+||+||+.+.....
T Consensus 39 ~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~ 118 (257)
T PRK14246 39 FGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDAIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSH 118 (257)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCCHHHHhcceEEEccCCccCCCCcHHHHHHHHHHhc
Confidence 58999999999999999999987543 12444444555432 234567899999999999999999999875432
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHH
Q 048028 74 LPRSVTKTKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVNV 153 (592)
Q Consensus 74 ~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~ 153 (592)
. ...+++.+++++++++.+++.+...... +..++.||||||||++|||+|+.+|++++|||||+|||+.++..+.+.
T Consensus 119 ~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~LS~G~~qrl~laral~~~P~llllDEPt~~LD~~~~~~l~~~ 195 (257)
T PRK14246 119 G--IKEKREIKKIVEECLRKVGLWKEVYDRL-NSPASQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKL 195 (257)
T ss_pred C--CCCHHHHHHHHHHHHHHcCCCccchhhh-cCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHH
Confidence 1 1233455577899999999964211111 234567999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCEEEEEecCChhHHHhhhceEEEecCCeEeeecChhhHH
Q 048028 154 LQRIAKSGSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNETPSNLA 200 (592)
Q Consensus 154 l~~la~~g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~~~~~ 200 (592)
|+++++ +.|||+++|+++ .+.++||++++|++|+++..|+++++.
T Consensus 196 l~~~~~-~~tiilvsh~~~-~~~~~~d~v~~l~~g~i~~~g~~~~~~ 240 (257)
T PRK14246 196 ITELKN-EIAIVIVSHNPQ-QVARVADYVAFLYNGELVEWGSSNEIF 240 (257)
T ss_pred HHHHhc-CcEEEEEECCHH-HHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 999965 689999999987 577899999999999999999987763
No 226
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=3.4e-36 Score=276.57 Aligned_cols=189 Identities=26% Similarity=0.445 Sum_probs=164.7
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCc----------------ccccceeEEEccCCCCCCCCCHHH
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLES----------------KLLKIISAYVMQDDLLFPMLTVEE 64 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~----------------~~~~~~~~yv~Q~~~l~~~lTV~E 64 (592)
+.|+|.|||||||+|+||.=+.+|. .|.|.+||+.+.- ...|...++|+|+.+++++|||.|
T Consensus 35 isIIGsSGSGKSTfLRCiN~LE~P~--~G~I~v~geei~~k~~~~G~l~~ad~~q~~r~Rs~L~mVFQ~FNLWsHmtvLe 112 (256)
T COG4598 35 ISIIGSSGSGKSTFLRCINFLEKPS--AGSIRVNGEEIRLKRDKDGQLKPADKRQLQRLRTRLGMVFQHFNLWSHMTVLE 112 (256)
T ss_pred EEEecCCCCchhHHHHHHHhhcCCC--CceEEECCeEEEeeeCCCCCeeeCCHHHHHHHHHHhhHhhhhcchhHHHHHHH
Confidence 4699999999999999999887754 5999999987631 123345699999999999999999
Q ss_pred HHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCH
Q 048028 65 TLMFAAEFRLPRSVTKTKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDS 144 (592)
Q Consensus 65 ~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~ 144 (592)
|+.-+-. +. -..++.+..++++..|..+||.+..|.. +..|||||+||++|||||+.+|+++++|||||+|||
T Consensus 113 NViEaPv-hV-Lg~~k~ea~e~Ae~~L~kVGi~ek~~~Y-----P~~LSGGQQQR~aIARaLameP~vmLFDEPTSALDP 185 (256)
T COG4598 113 NVIEAPV-HV-LGVSKAEAIERAEKYLAKVGIAEKADAY-----PAHLSGGQQQRVAIARALAMEPEVMLFDEPTSALDP 185 (256)
T ss_pred HHHhcch-Hh-hcCCHHHHHHHHHHHHHHhCchhhhhcC-----ccccCchHHHHHHHHHHHhcCCceEeecCCcccCCH
Confidence 9865421 10 1357788889999999999999888644 556999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHcCCEEEEEecCChhHHHhhhceEEEecCCeEeeecChhhH
Q 048028 145 TSAFMVVNVLQRIAKSGSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNETPSNL 199 (592)
Q Consensus 145 ~~~~~i~~~l~~la~~g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~~~~ 199 (592)
+-.-++++.+++||++|+|.+++||.+. -..+...+|++|++|.+-.+|+|+++
T Consensus 186 ElVgEVLkv~~~LAeEgrTMv~VTHEM~-FAR~Vss~v~fLh~G~iEE~G~P~qv 239 (256)
T COG4598 186 ELVGEVLKVMQDLAEEGRTMVVVTHEMG-FARDVSSHVIFLHQGKIEEEGPPEQV 239 (256)
T ss_pred HHHHHHHHHHHHHHHhCCeEEEEeeehh-HHHhhhhheEEeecceecccCChHHH
Confidence 9999999999999999999999999997 47788999999999999999999886
No 227
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.5e-36 Score=330.70 Aligned_cols=188 Identities=23% Similarity=0.446 Sum_probs=157.5
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCcc----cccceeEEEccC---CCCCCCCCHHHHHHHHHHcc
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLESK----LLKIISAYVMQD---DLLFPMLTVEETLMFAAEFR 73 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~~----~~~~~~~yv~Q~---~~l~~~lTV~E~l~f~~~l~ 73 (592)
++|+||||||||||||+|+|+.+|. +|+|.++|+++... ..++.++|++|+ ..+++.+||+||+.+....+
T Consensus 292 ~~l~G~NGsGKSTLlk~i~Gl~~p~--~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~ 369 (510)
T PRK09700 292 LGFAGLVGSGRTELMNCLFGVDKRA--GGEIRLNGKDISPRSPLDAVKKGMAYITESRRDNGFFPNFSIAQNMAISRSLK 369 (510)
T ss_pred EEEECCCCCCHHHHHHHHhCCCcCC--CCeEEECCEECCCCCHHHHHHCCcEEccCccccCCCcCCCcHHHHhccccccc
Confidence 5899999999999999999998754 59999999887431 234568999998 46889999999998753321
Q ss_pred ---CCC--C-CCHHHHHHHHHHHHHHcCCc-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHH
Q 048028 74 ---LPR--S-VTKTKKQERVEALINQLGLR-SAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTS 146 (592)
Q Consensus 74 ---~~~--~-~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~ 146 (592)
... . ....+.+++++++++.+||. +..++.++ .|||||||||+||++|+.+|++|||||||+|||+.+
T Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~ 444 (510)
T PRK09700 370 DGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNIT-----ELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGA 444 (510)
T ss_pred cccccccccccChHHHHHHHHHHHHhcCCCCCCccCccc-----cCChHHHHHHHHHHHHhcCCCEEEECCCCCCcCHHH
Confidence 000 1 12233346788999999996 66766654 599999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCEEEEEecCChhHHHhhhceEEEecCCeEeeecCh
Q 048028 147 AFMVVNVLQRIAKSGSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNETP 196 (592)
Q Consensus 147 ~~~i~~~l~~la~~g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~ 196 (592)
+..+.+.|++++++|.|||++|||+. ++.++|||+++|++|+++..++.
T Consensus 445 ~~~l~~~l~~l~~~g~tvi~vsHd~~-~~~~~~d~i~~l~~G~i~~~~~~ 493 (510)
T PRK09700 445 KAEIYKVMRQLADDGKVILMVSSELP-EIITVCDRIAVFCEGRLTQILTN 493 (510)
T ss_pred HHHHHHHHHHHHHCCCEEEEEcCCHH-HHHhhCCEEEEEECCEEEEEecC
Confidence 99999999999888999999999997 68899999999999999987765
No 228
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=100.00 E-value=1.8e-35 Score=329.78 Aligned_cols=192 Identities=24% Similarity=0.428 Sum_probs=161.2
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCC---CceeEEEECCEecCcc------ccc-ceeEEEccCCC--CCCCCCHHHHHHH
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKE---SLQGAVTLNGEVLESK------LLK-IISAYVMQDDL--LFPMLTVEETLMF 68 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~---~~~G~I~i~g~~~~~~------~~~-~~~~yv~Q~~~--l~~~lTV~E~l~f 68 (592)
+||+||||||||||+|+|+|.+++. +.+|+|.++|+++... ..+ +.+||++|++. +++.+||+|++.+
T Consensus 38 ~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~ 117 (529)
T PRK15134 38 LALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYE 117 (529)
T ss_pred EEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCHHHHHHHhcCceEEEecCchhhcCchhhHHHHHHH
Confidence 5899999999999999999998752 2579999999987431 122 46899999974 6778899999876
Q ss_pred HHHccCCCCCCHHHHHHHHHHHHHHcCCccc---ccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHH
Q 048028 69 AAEFRLPRSVTKTKKQERVEALINQLGLRSA---AKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDST 145 (592)
Q Consensus 69 ~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~---~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~ 145 (592)
...... ..+..+.+++++++++.+||.+. .++. +.+|||||||||+||++|+.+|++|+|||||+|||+.
T Consensus 118 ~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~-----~~~LSgGe~qrv~iAraL~~~p~llllDEPt~~LD~~ 190 (529)
T PRK15134 118 VLSLHR--GMRREAARGEILNCLDRVGIRQAAKRLTDY-----PHQLSGGERQRVMIAMALLTRPELLIADEPTTALDVS 190 (529)
T ss_pred HHHHhc--CCCHHHHHHHHHHHHHHCCCCChHHHHhhC-----CcccCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHH
Confidence 543211 23445567889999999999752 3444 4569999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHc-CCEEEEEecCChhHHHhhhceEEEecCCeEeeecChhhHH
Q 048028 146 SAFMVVNVLQRIAKS-GSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNETPSNLA 200 (592)
Q Consensus 146 ~~~~i~~~l~~la~~-g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~~~~~ 200 (592)
++..+.+.|++++++ |+|||++||+++ .+.++|||+++|++|++++.|+++++.
T Consensus 191 ~~~~l~~~l~~l~~~~g~tvi~vtHd~~-~~~~~~dri~~l~~G~i~~~g~~~~~~ 245 (529)
T PRK15134 191 VQAQILQLLRELQQELNMGLLFITHNLS-IVRKLADRVAVMQNGRCVEQNRAATLF 245 (529)
T ss_pred HHHHHHHHHHHHHHhcCCeEEEEcCcHH-HHHHhcCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999875 899999999997 588899999999999999999987763
No 229
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=100.00 E-value=1.8e-35 Score=329.86 Aligned_cols=189 Identities=26% Similarity=0.427 Sum_probs=160.6
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCcc------cccceeEEEccCC--CCCCCCCHHHHHHHHHHc
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLESK------LLKIISAYVMQDD--LLFPMLTVEETLMFAAEF 72 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~~------~~~~~~~yv~Q~~--~l~~~lTV~E~l~f~~~l 72 (592)
++|+||||||||||+|+|+|+.+ .+|+|.++|+++... ..++.++|++|++ .+++.+||+||+.+....
T Consensus 315 ~~i~G~nGsGKSTLlk~l~Gl~~---~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~ 391 (529)
T PRK15134 315 LGLVGESGSGKSTTGLALLRLIN---SQGEIWFDGQPLHNLNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRV 391 (529)
T ss_pred EEEECCCCCCHHHHHHHHhCcCC---CCcEEEECCEEccccchhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHh
Confidence 58999999999999999999974 369999999887431 1245689999996 488899999999887543
Q ss_pred cCCCCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHH
Q 048028 73 RLPRSVTKTKKQERVEALINQLGLR-SAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVV 151 (592)
Q Consensus 73 ~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~ 151 (592)
+.. ..+..+.+++++++++.+||. +..++.+ +.|||||||||+||++|+.+|++|||||||+|||+.++..+.
T Consensus 392 ~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~ 465 (529)
T PRK15134 392 HQP-TLSAAQREQQVIAVMEEVGLDPETRHRYP-----AEFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQIL 465 (529)
T ss_pred ccc-cCChHHHHHHHHHHHHHcCCCHHHHhcCC-----ccCCHHHHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHH
Confidence 211 123344567789999999997 4565554 569999999999999999999999999999999999999999
Q ss_pred HHHHHHHHc-CCEEEEEecCChhHHHhhhceEEEecCCeEeeecChhhH
Q 048028 152 NVLQRIAKS-GSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNETPSNL 199 (592)
Q Consensus 152 ~~l~~la~~-g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~~~~ 199 (592)
+.|++++++ |+|||++||++. ++.++||++++|++|+++..|+++++
T Consensus 466 ~~l~~~~~~~~~tvi~vsHd~~-~~~~~~d~i~~l~~G~i~~~~~~~~~ 513 (529)
T PRK15134 466 ALLKSLQQKHQLAYLFISHDLH-VVRALCHQVIVLRQGEVVEQGDCERV 513 (529)
T ss_pred HHHHHHHHhhCCEEEEEeCCHH-HHHHhcCeEEEEECCEEEEEcCHHHH
Confidence 999999875 899999999997 58889999999999999999998776
No 230
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=1.8e-35 Score=318.14 Aligned_cols=195 Identities=29% Similarity=0.457 Sum_probs=171.0
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCC--CceeEEEECCEecCcc-------cccceeEEEccCC--CCCCCCCHHHHHHHH
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKE--SLQGAVTLNGEVLESK-------LLKIISAYVMQDD--LLFPMLTVEETLMFA 69 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~--~~~G~I~i~g~~~~~~-------~~~~~~~yv~Q~~--~l~~~lTV~E~l~f~ 69 (592)
+||+|.|||||||+.++|.|++++. ..+|+|.++|+++... ...+.++|++|++ .+.|-+||.+.+.-.
T Consensus 38 lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~ 117 (539)
T COG1123 38 LGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREA 117 (539)
T ss_pred EEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHHHHHhccccEEEEecCchhhcCchhhHHHHHHHH
Confidence 5899999999999999999999854 2579999999876431 1235689999996 578889999998876
Q ss_pred HHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHH
Q 048028 70 AEFRLPRSVTKTKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFM 149 (592)
Q Consensus 70 ~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~ 149 (592)
.+.+. ..+.++.++++.++++.+||.+.... +.++++|||||||||.||+||+.+|++|++||||++||+.++.+
T Consensus 118 ~~~h~--~~~~~ea~~~a~elL~~Vgl~~~~~~---~~yPheLSGG~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~q 192 (539)
T COG1123 118 LRLHG--KGSRAEARKRAVELLEQVGLPDPERR---DRYPHQLSGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQ 192 (539)
T ss_pred HHHhc--cccHHHHHHHHHHHHHHcCCCChhhh---ccCCcccCchHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHH
Confidence 66653 23477888999999999999886654 56899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHH-cCCEEEEEecCChhHHHhhhceEEEecCCeEeeecChhhHHH
Q 048028 150 VVNVLQRIAK-SGSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNETPSNLAQ 201 (592)
Q Consensus 150 i~~~l~~la~-~g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~~~~~~ 201 (592)
|+++|+++.+ .|.++|++|||+. -+.++||||++|++|++++.|+++++.+
T Consensus 193 IL~llk~l~~e~g~a~l~ITHDl~-Vva~~aDrv~Vm~~G~iVE~G~~~~i~~ 244 (539)
T COG1123 193 ILDLLKDLQRELGMAVLFITHDLG-VVAELADRVVVMYKGEIVETGPTEEILS 244 (539)
T ss_pred HHHHHHHHHHHcCcEEEEEcCCHH-HHHHhcCeEEEEECCEEEEecCHHHHHh
Confidence 9999999986 5999999999998 5899999999999999999999998854
No 231
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=1.7e-35 Score=292.26 Aligned_cols=173 Identities=23% Similarity=0.357 Sum_probs=150.2
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCcccccceeEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCH
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLESKLLKIISAYVMQDDLLFPMLTVEETLMFAAEFRLPRSVTK 80 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~ 80 (592)
++|+||||||||||+|+|+|+.++. +|+|.++|+++.....++.++|++|++.+++.+|++||+.+....+. .
T Consensus 40 ~~i~G~nGsGKSTLl~~i~G~~~~~--~G~i~~~g~~i~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~---~-- 112 (214)
T PRK13543 40 LLVQGDNGAGKTTLLRVLAGLLHVE--SGQIQIDGKTATRGDRSRFMAYLGHLPGLKADLSTLENLHFLCGLHG---R-- 112 (214)
T ss_pred EEEEcCCCCCHHHHHHHHhCCCCCC--CeeEEECCEEccchhhhhceEEeecCcccccCCcHHHHHHHHHHhcC---C--
Confidence 4899999999999999999998754 59999999987644345568999999999999999999988754321 1
Q ss_pred HHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc
Q 048028 81 TKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVNVLQRIAKS 160 (592)
Q Consensus 81 ~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~la~~ 160 (592)
..+++++++++.++|.+..++.+ +.||||||||++||++++.+|++++|||||+|||+.++..+.+.|++++++
T Consensus 113 -~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~ 186 (214)
T PRK13543 113 -RAKQMPGSALAIVGLAGYEDTLV-----RQLSAGQKKRLALARLWLSPAPLWLLDEPYANLDLEGITLVNRMISAHLRG 186 (214)
T ss_pred -cHHHHHHHHHHHcCChhhccCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhC
Confidence 12356788999999987776655 459999999999999999999999999999999999999999999999888
Q ss_pred CCEEEEEecCChhHHHhhhceEEEecC
Q 048028 161 GSIVIMSIHQPSYRILSLLDRLIILSH 187 (592)
Q Consensus 161 g~tvi~~~H~~~~~i~~~~D~v~ll~~ 187 (592)
|+|+|+++|+++ ++.+++|++++++.
T Consensus 187 ~~tiii~sH~~~-~~~~~~~~i~~l~~ 212 (214)
T PRK13543 187 GGAALVTTHGAY-AAPPVRTRMLTLEA 212 (214)
T ss_pred CCEEEEEecChh-hhhhhcceEEEEee
Confidence 999999999997 68999999999864
No 232
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2e-35 Score=300.94 Aligned_cols=192 Identities=22% Similarity=0.356 Sum_probs=156.5
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCC---CceeEEEECCEecCc-----ccccceeEEEccCCCCCCCCCHHHHHHHHHHc
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKE---SLQGAVTLNGEVLES-----KLLKIISAYVMQDDLLFPMLTVEETLMFAAEF 72 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~---~~~G~I~i~g~~~~~-----~~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l 72 (592)
++|+||||||||||+|+|+|+.++. +.+|+|.++|+++.. ...++.++|++|++.+++. ||.||+.+....
T Consensus 39 ~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~ 117 (264)
T PRK14243 39 TAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDPVEVRRRIGMVFQKPNPFPK-SIYDNIAYGARI 117 (264)
T ss_pred EEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccChHHHhhhEEEEccCCccccc-cHHHHHHhhhhh
Confidence 5899999999999999999987531 257999999988732 2345678999999988884 999999886543
Q ss_pred cCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHH
Q 048028 73 RLPRSVTKTKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVN 152 (592)
Q Consensus 73 ~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~ 152 (592)
+ ... .+.+++++++++.+++.+..+... +..++.||||||||++|||+|+.+|++|||||||+|||+.++..+.+
T Consensus 118 ~---~~~-~~~~~~~~~~l~~~~l~~~l~~~~-~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~ 192 (264)
T PRK14243 118 N---GYK-GDMDELVERSLRQAALWDEVKDKL-KQSGLSLSGGQQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEE 192 (264)
T ss_pred c---Ccc-hHHHHHHHHHHHHhCchhhHHHHh-cCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHH
Confidence 2 111 233456778888888753211111 33456799999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCEEEEEecCChhHHHhhhceEEEec---------CCeEeeecChhhHH
Q 048028 153 VLQRIAKSGSIVIMSIHQPSYRILSLLDRLIILS---------HGQSVYNETPSNLA 200 (592)
Q Consensus 153 ~l~~la~~g~tvi~~~H~~~~~i~~~~D~v~ll~---------~G~~v~~g~~~~~~ 200 (592)
.|+++++ ++|||+++|+++ ++.++|||+++|+ +|+++..|+++++.
T Consensus 193 ~L~~~~~-~~tvi~vtH~~~-~~~~~~d~v~~l~~~~~~~~~~~g~i~~~~~~~~~~ 247 (264)
T PRK14243 193 LMHELKE-QYTIIIVTHNMQ-QAARVSDMTAFFNVELTEGGGRYGYLVEFDRTEKIF 247 (264)
T ss_pred HHHHHhc-CCEEEEEecCHH-HHHHhCCEEEEEecccccccccCceEEEeCCHHHHH
Confidence 9999976 589999999997 6899999999998 79999999988773
No 233
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=100.00 E-value=2.8e-35 Score=292.66 Aligned_cols=174 Identities=26% Similarity=0.386 Sum_probs=146.9
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCcccccceeEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCH
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLESKLLKIISAYVMQDDLLFPMLTVEETLMFAAEFRLPRSVTK 80 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~ 80 (592)
++|+||||||||||+++|+|..++ .+|+|.++|+++.. ..+...+.+.+||+||+.+....+ ..+.
T Consensus 51 ~~i~G~nGsGKSTLl~~l~G~~~p--~~G~i~~~g~~~~~---------~~~~~~~~~~~tv~enl~~~~~~~---~~~~ 116 (224)
T cd03220 51 IGLIGRNGAGKSTLLRLLAGIYPP--DSGTVTVRGRVSSL---------LGLGGGFNPELTGRENIYLNGRLL---GLSR 116 (224)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEEchh---------hcccccCCCCCcHHHHHHHHHHHc---CCCH
Confidence 489999999999999999999875 45999999987531 111234567799999998876532 1233
Q ss_pred HHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc
Q 048028 81 TKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVNVLQRIAKS 160 (592)
Q Consensus 81 ~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~la~~ 160 (592)
.+.+++++++++.+++++..++.++ .||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++
T Consensus 117 ~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgG~~qrv~laral~~~p~llllDEP~~gLD~~~~~~~~~~l~~~~~~ 191 (224)
T cd03220 117 KEIDEKIDEIIEFSELGDFIDLPVK-----TYSSGMKARLAFAIATALEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQ 191 (224)
T ss_pred HHHHHHHHHHHHHcCChhhhhCChh-----hCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhC
Confidence 4455678899999999887776654 59999999999999999999999999999999999999999999999877
Q ss_pred CCEEEEEecCChhHHHhhhceEEEecCCeEeeec
Q 048028 161 GSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNE 194 (592)
Q Consensus 161 g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g 194 (592)
|+|||+++|+++ ++.+++|++++|++|++++.|
T Consensus 192 ~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~g 224 (224)
T cd03220 192 GKTVILVSHDPS-SIKRLCDRALVLEKGKIRFDG 224 (224)
T ss_pred CCEEEEEeCCHH-HHHHhCCEEEEEECCEEEecC
Confidence 899999999987 588899999999999998765
No 234
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=100.00 E-value=6.9e-36 Score=296.05 Aligned_cols=179 Identities=32% Similarity=0.522 Sum_probs=148.0
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCc---ccccceeEEEccCCCCCCCCCHHHHHHHHHHccCCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLES---KLLKIISAYVMQDDLLFPMLTVEETLMFAAEFRLPRS 77 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~---~~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~~~~ 77 (592)
++|+||||||||||+++|+|..++. +|+|.++|+++.. ...++.++|++|++.+++ .||.||+.+... .
T Consensus 33 ~~i~G~nGsGKSTLl~~i~G~~~~~--~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~-----~ 104 (220)
T cd03245 33 VAIIGRVGSGKSTLLKLLAGLYKPT--SGSVLLDGTDIRQLDPADLRRNIGYVPQDVTLFY-GTLRDNITLGAP-----L 104 (220)
T ss_pred EEEECCCCCCHHHHHHHHhcCcCCC--CCeEEECCEEhHHCCHHHHHhhEEEeCCCCcccc-chHHHHhhcCCC-----C
Confidence 4899999999999999999998754 5999999998643 234567899999998887 599999976421 1
Q ss_pred CCHHHHHHHHHHHHHHcCCccccccccc------CCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHH
Q 048028 78 VTKTKKQERVEALINQLGLRSAAKTFIG------DERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVV 151 (592)
Q Consensus 78 ~~~~~~~~~v~~~l~~lgL~~~~~~~vg------~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~ 151 (592)
.. ++++.++++.+++.+..+..+. ...+..||||||||++||++|+.+|++|+|||||+|||+.++..+.
T Consensus 105 ~~----~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~ 180 (220)
T cd03245 105 AD----DERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERLK 180 (220)
T ss_pred CC----HHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHH
Confidence 11 2346678888888776655431 1234689999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCEEEEEecCChhHHHhhhceEEEecCCeEeeec
Q 048028 152 NVLQRIAKSGSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNE 194 (592)
Q Consensus 152 ~~l~~la~~g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g 194 (592)
+.|++++++ +|||+++|+++ .+ +++|++++|++|++++.|
T Consensus 181 ~~l~~~~~~-~tii~~sH~~~-~~-~~~d~v~~l~~g~i~~~~ 220 (220)
T cd03245 181 ERLRQLLGD-KTLIIITHRPS-LL-DLVDRIIVMDSGRIVADG 220 (220)
T ss_pred HHHHHhcCC-CEEEEEeCCHH-HH-HhCCEEEEEeCCeEeecC
Confidence 999999764 89999999987 44 799999999999998654
No 235
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.7e-35 Score=301.44 Aligned_cols=191 Identities=23% Similarity=0.334 Sum_probs=155.7
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCC---CceeEEEECCEecCc-----ccccceeEEEccCCCCCCCCCHHHHHHHHHHc
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKE---SLQGAVTLNGEVLES-----KLLKIISAYVMQDDLLFPMLTVEETLMFAAEF 72 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~---~~~G~I~i~g~~~~~-----~~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l 72 (592)
++|+||||||||||+++|+|+.++. +.+|+|.++|+++.. ...++.++|++|+..+++. ||.||+.+....
T Consensus 49 ~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~~nl~~~~~~ 127 (274)
T PRK14265 49 IAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINSVKLRRQVGMVFQRPNPFPK-SIYENIAFAPRA 127 (274)
T ss_pred EEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccchhHHHhhcEEEEccCCccccc-cHHHHHHhHHHh
Confidence 5899999999999999999997532 247999999998742 2345678999999988875 999999886543
Q ss_pred cCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHH
Q 048028 73 RLPRSVTKTKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVN 152 (592)
Q Consensus 73 ~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~ 152 (592)
+. .. .+.++.+++.++.+++.+...... +..+..|||||||||+||++|+.+|++|||||||+|||+.++..+.+
T Consensus 128 ~~---~~-~~~~~~~~~~l~~~~l~~~l~~~~-~~~~~~LSgGq~qrv~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~ 202 (274)
T PRK14265 128 NG---YK-GNLDELVEDSLRRAAIWEEVKDKL-KEKGTALSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEE 202 (274)
T ss_pred cC---ch-HHHHHHHHHHHHHcccchhhHHHh-cCCcccCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHH
Confidence 21 11 123345677888888742211111 23456799999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCEEEEEecCChhHHHhhhceEEEec---------CCeEeeecChhhH
Q 048028 153 VLQRIAKSGSIVIMSIHQPSYRILSLLDRLIILS---------HGQSVYNETPSNL 199 (592)
Q Consensus 153 ~l~~la~~g~tvi~~~H~~~~~i~~~~D~v~ll~---------~G~~v~~g~~~~~ 199 (592)
.|+++++ ++|||+++|+++ ++.+++||+++|+ +|++++.|+++++
T Consensus 203 ~L~~~~~-~~tiii~sH~~~-~~~~~~d~i~~l~~~~~~~~~~~G~~~~~g~~~~~ 256 (274)
T PRK14265 203 LCLELKE-QYTIIMVTHNMQ-QASRVADWTAFFNTEIDEYGKRRGKLVEFSPTEQM 256 (274)
T ss_pred HHHHHhc-CCEEEEEeCCHH-HHHHhCCEEEEEecccccccccCceEEEeCCHHHH
Confidence 9999975 689999999997 6889999999997 7999999999877
No 236
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=100.00 E-value=2.3e-35 Score=328.30 Aligned_cols=194 Identities=31% Similarity=0.451 Sum_probs=160.6
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEEC-----------------------CEecC----------c---cccc
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLN-----------------------GEVLE----------S---KLLK 44 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~-----------------------g~~~~----------~---~~~~ 44 (592)
++|+||||||||||||+|+|+.+..+.+|+|.++ |.++. . ...+
T Consensus 29 ~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 108 (520)
T TIGR03269 29 LGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIR 108 (520)
T ss_pred EEEECCCCCCHHHHHHHHhhcccCCCCceEEEEeccccccccccccccccccccccccccccccchhhhccCHHHHHHhh
Confidence 5899999999999999999996201346999997 22210 0 1234
Q ss_pred ceeEEEccC-CCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHH
Q 048028 45 IISAYVMQD-DLLFPMLTVEETLMFAAEFRLPRSVTKTKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIG 123 (592)
Q Consensus 45 ~~~~yv~Q~-~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia 123 (592)
+.++|++|+ +.+++.+||+||+.+..... ..+..+.+++++++++.+||++..++.+ +.|||||||||+||
T Consensus 109 ~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LSgGq~qrv~iA 180 (520)
T TIGR03269 109 KRIAIMLQRTFALYGDDTVLDNVLEALEEI---GYEGKEAVGRAVDLIEMVQLSHRITHIA-----RDLSGGEKQRVVLA 180 (520)
T ss_pred hcEEEEeccccccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhcCc-----ccCCHHHHHHHHHH
Confidence 568999997 68889999999999876432 2334455678999999999987776554 46999999999999
Q ss_pred HHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCChhHHHhhhceEEEecCCeEeeecChhhHHHH
Q 048028 124 IHIIHDPILLFLDEPTSGLDSTSAFMVVNVLQRIAKS-GSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNETPSNLAQF 202 (592)
Q Consensus 124 ~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~la~~-g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~~~~~~~ 202 (592)
++|+.+|++|||||||+|||+.++..+.+.|++++++ |+|||+++|++. .+.++||++++|++|++++.|+++++.+.
T Consensus 181 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivtHd~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 259 (520)
T TIGR03269 181 RQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPE-VIEDLSDKAIWLENGEIKEEGTPDEVVAV 259 (520)
T ss_pred HHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH-HHHHhcCEEEEEeCCEEeeecCHHHHHHH
Confidence 9999999999999999999999999999999999764 899999999997 57889999999999999999998877554
Q ss_pred H
Q 048028 203 F 203 (592)
Q Consensus 203 f 203 (592)
+
T Consensus 260 ~ 260 (520)
T TIGR03269 260 F 260 (520)
T ss_pred H
Confidence 3
No 237
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=100.00 E-value=4e-35 Score=295.88 Aligned_cols=195 Identities=25% Similarity=0.284 Sum_probs=154.2
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCcc----cccceeEEEccCCCCCCCCCHHHHHHHHHH-ccC-
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLESK----LLKIISAYVMQDDLLFPMLTVEETLMFAAE-FRL- 74 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~~----~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~-l~~- 74 (592)
++|+||||||||||+++|+|+.+..+.+|+|.++|+++... ..++.++|++|++.+++.+|+.+++.+... ++.
T Consensus 30 ~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~ 109 (248)
T PRK09580 30 HAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSY 109 (248)
T ss_pred EEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCHHHHhhcceEEEecCchhccchhHHHHHHHhhhhhhcc
Confidence 48999999999999999999953113569999999876432 123458999999999998888777654321 110
Q ss_pred -CC-CCCHHHHHHHHHHHHHHcCCc-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHH
Q 048028 75 -PR-SVTKTKKQERVEALINQLGLR-SAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVV 151 (592)
Q Consensus 75 -~~-~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~ 151 (592)
.. .....+..++++++++.+++. +..++.+. +.|||||||||+||++|+.+|++|+|||||+|||+.++..+.
T Consensus 110 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~----~~LS~G~~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~ 185 (248)
T PRK09580 110 RGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSVN----VGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKIVA 185 (248)
T ss_pred cccccchHHHHHHHHHHHHHHcCCChhhcccCCC----CCCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHH
Confidence 00 011223356788899999995 34443331 369999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCEEEEEecCChhHHHhh-hceEEEecCCeEeeecChhhHH
Q 048028 152 NVLQRIAKSGSIVIMSIHQPSYRILSL-LDRLIILSHGQSVYNETPSNLA 200 (592)
Q Consensus 152 ~~l~~la~~g~tvi~~~H~~~~~i~~~-~D~v~ll~~G~~v~~g~~~~~~ 200 (592)
+.|++++++|+|||+++|++. .+... +|++++|++|++++.|+++.+.
T Consensus 186 ~~l~~l~~~~~tiii~sH~~~-~~~~~~~d~i~~l~~g~i~~~g~~~~~~ 234 (248)
T PRK09580 186 DGVNSLRDGKRSFIIVTHYQR-ILDYIKPDYVHVLYQGRIVKSGDFTLVK 234 (248)
T ss_pred HHHHHHHhCCCEEEEEeCCHH-HHHhhhCCEEEEEECCeEEEeCCHHHHH
Confidence 999999887899999999987 46665 8999999999999999988653
No 238
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=100.00 E-value=1.9e-35 Score=327.48 Aligned_cols=191 Identities=25% Similarity=0.428 Sum_probs=160.3
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCcc----cccceeEEEccCC---CCCCCCCHHHHHHHHHHcc
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLESK----LLKIISAYVMQDD---LLFPMLTVEETLMFAAEFR 73 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~~----~~~~~~~yv~Q~~---~l~~~lTV~E~l~f~~~l~ 73 (592)
++|+||||||||||+|+|+|+.+|. +|+|.++|+++... ..++.++|++|++ .+++.+||.||+.+.....
T Consensus 281 ~~liG~NGsGKSTLl~~l~G~~~p~--~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~ 358 (501)
T PRK10762 281 LGVSGLMGAGRTELMKVLYGALPRT--SGYVTLDGHEVVTRSPQDGLANGIVYISEDRKRDGLVLGMSVKENMSLTALRY 358 (501)
T ss_pred EEEecCCCCCHHHHHHHHhCCCCCC--ceEEEECCEECCCCCHHHHHHCCCEEecCccccCCCcCCCcHHHHhhhhhhhh
Confidence 4899999999999999999998754 59999999887532 2345689999995 5889999999998753211
Q ss_pred CC---CCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHH
Q 048028 74 LP---RSVTKTKKQERVEALINQLGLR-SAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFM 149 (592)
Q Consensus 74 ~~---~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~ 149 (592)
.. ...+.++.+++++++++.+||. +..++.++ .|||||||||+||++|+.+|++|||||||+|||+.++..
T Consensus 359 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----~LSgGekqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~ 433 (501)
T PRK10762 359 FSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAIG-----LLSGGNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKE 433 (501)
T ss_pred hcccccccCHHHHHHHHHHHHHhcCCCCCCccCchh-----hCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCCCHhHHHH
Confidence 00 0122334456789999999995 56666554 599999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCEEEEEecCChhHHHhhhceEEEecCCeEeeecChhhH
Q 048028 150 VVNVLQRIAKSGSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNETPSNL 199 (592)
Q Consensus 150 i~~~l~~la~~g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~~~~ 199 (592)
+.+.|++++++|.|||++||++. ++.++||++++|++|+++..|+++++
T Consensus 434 l~~~l~~~~~~g~tviivtHd~~-~~~~~~d~v~~l~~G~i~~~~~~~~~ 482 (501)
T PRK10762 434 IYQLINQFKAEGLSIILVSSEMP-EVLGMSDRILVMHEGRISGEFTREQA 482 (501)
T ss_pred HHHHHHHHHHCCCEEEEEcCCHH-HHHhhCCEEEEEECCEEEEEeccccC
Confidence 99999999888999999999997 68899999999999999998887654
No 239
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=6.8e-36 Score=297.89 Aligned_cols=185 Identities=28% Similarity=0.451 Sum_probs=147.3
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCc---ccccceeEEEccCCCCCCCCCHHHHHHHHHHccCCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLES---KLLKIISAYVMQDDLLFPMLTVEETLMFAAEFRLPRS 77 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~---~~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~~~~ 77 (592)
++|+|||||||||||++|+|+.++. +|+|.++|.++.. ...++.++|++|++.+++. ||+||+.+....
T Consensus 32 ~~i~G~nGsGKSTLl~~l~G~~~~~--~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~-tv~~~~~~~~~~----- 103 (229)
T cd03254 32 VAIVGPTGAGKTTLINLLMRFYDPQ--KGQILIDGIDIRDISRKSLRSMIGVVLQDTFLFSG-TIMENIRLGRPN----- 103 (229)
T ss_pred EEEECCCCCCHHHHHHHHhcCcCCC--CCEEEECCEeHHHcCHHHHhhhEEEecCCchhhhh-HHHHHHhccCCC-----
Confidence 4899999999999999999998754 5999999988753 2345678999999988886 999999764211
Q ss_pred CCHHHHHHHHHHHHHHcCCcccccccc------cCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHH
Q 048028 78 VTKTKKQERVEALINQLGLRSAAKTFI------GDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVV 151 (592)
Q Consensus 78 ~~~~~~~~~v~~~l~~lgL~~~~~~~v------g~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~ 151 (592)
.. .+++++.++.+++.+..+... -+..++.|||||||||+||++|+.+|++++|||||+|||+.++..+.
T Consensus 104 ~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~p~llllDEP~~~LD~~~~~~l~ 179 (229)
T cd03254 104 AT----DEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQ 179 (229)
T ss_pred CC----HHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHH
Confidence 11 123344444444443222210 12345789999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCEEEEEecCChhHHHhhhceEEEecCCeEeeecChhhHH
Q 048028 152 NVLQRIAKSGSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNETPSNLA 200 (592)
Q Consensus 152 ~~l~~la~~g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~~~~~ 200 (592)
+.|++++ +|+|||++||+++ ++ +.+|++++|++|++++.|+.+++.
T Consensus 180 ~~l~~~~-~~~tii~~sh~~~-~~-~~~d~i~~l~~g~~~~~~~~~~~~ 225 (229)
T cd03254 180 EALEKLM-KGRTSIIIAHRLS-TI-KNADKILVLDDGKIIEEGTHDELL 225 (229)
T ss_pred HHHHHhc-CCCEEEEEecCHH-HH-hhCCEEEEEeCCeEEEeCCHHHHH
Confidence 9999996 5899999999997 45 469999999999999988876653
No 240
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=100.00 E-value=8.5e-36 Score=336.42 Aligned_cols=185 Identities=26% Similarity=0.420 Sum_probs=156.6
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCc---ccccceeEEEccCCCCCCCCCHHHHHHHHHHccCCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLES---KLLKIISAYVMQDDLLFPMLTVEETLMFAAEFRLPRS 77 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~---~~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~~~~ 77 (592)
+||+||||||||||+|+|+|+.+|. +|+|.+||.+++. ..+++.++||+|++.+|+. |++||+.++. +..
T Consensus 372 ~aIvG~sGsGKSTLl~ll~gl~~p~--~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~-Ti~~Ni~~~~----~~~ 444 (582)
T PRK11176 372 VALVGRSGSGKSTIANLLTRFYDID--EGEILLDGHDLRDYTLASLRNQVALVSQNVHLFND-TIANNIAYAR----TEQ 444 (582)
T ss_pred EEEECCCCCCHHHHHHHHHhccCCC--CceEEECCEEhhhcCHHHHHhhceEEccCceeecc-hHHHHHhcCC----CCC
Confidence 5899999999999999999998864 5999999998764 3567889999999999986 9999997642 111
Q ss_pred CCHHHHHHHHHHHHHHcCCc-------ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHH
Q 048028 78 VTKTKKQERVEALINQLGLR-------SAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMV 150 (592)
Q Consensus 78 ~~~~~~~~~v~~~l~~lgL~-------~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i 150 (592)
.+ +++++++++..|+. +-.||.+|+. .+.||||||||++|||+|+++|++|+||||||+||+.++..+
T Consensus 445 ~~----~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~-g~~LSGGqrQRi~LARall~~~~ililDEptsaLD~~t~~~i 519 (582)
T PRK11176 445 YS----REQIEEAARMAYAMDFINKMDNGLDTVIGEN-GVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAI 519 (582)
T ss_pred CC----HHHHHHHHHHhCcHHHHHhcccccCceeCCC-CCcCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHH
Confidence 22 23455566665543 4468888864 577999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCEEEEEecCChhHHHhhhceEEEecCCeEeeecChhhHH
Q 048028 151 VNVLQRIAKSGSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNETPSNLA 200 (592)
Q Consensus 151 ~~~l~~la~~g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~~~~~ 200 (592)
.+.|+++. +++|+|+++|+++ ..+.||+|++|++|+++..|+.+++.
T Consensus 520 ~~~l~~~~-~~~tvI~VtHr~~--~~~~~D~Ii~l~~g~i~e~g~~~~l~ 566 (582)
T PRK11176 520 QAALDELQ-KNRTSLVIAHRLS--TIEKADEILVVEDGEIVERGTHAELL 566 (582)
T ss_pred HHHHHHHh-CCCEEEEEecchH--HHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 99999985 4799999999996 56789999999999999999998874
No 241
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.2e-35 Score=334.29 Aligned_cols=189 Identities=24% Similarity=0.385 Sum_probs=160.6
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecC-------------cc---cc-cceeEEEccCC--CCCCCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLE-------------SK---LL-KIISAYVMQDD--LLFPMLT 61 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~-------------~~---~~-~~~~~yv~Q~~--~l~~~lT 61 (592)
+||+||||||||||+|+|+|++++. +|+|.++|..+. .. .. ++.+|||+|++ .+++.+|
T Consensus 45 ~~lvG~nGsGKSTLl~~l~Gll~p~--~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~t 122 (623)
T PRK10261 45 LAIVGESGSGKSVTALALMRLLEQA--GGLVQCDKMLLRRRSRQVIELSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFT 122 (623)
T ss_pred EEEECCCCChHHHHHHHHHcCCCCC--CeEEEECCEEeccccccccccccCCHHHHHHHhCCCEEEEEeCchhhcCCCCC
Confidence 5899999999999999999998754 599999987441 11 11 23689999997 6889999
Q ss_pred HHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcc---cccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCC
Q 048028 62 VEETLMFAAEFRLPRSVTKTKKQERVEALINQLGLRS---AAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEP 138 (592)
Q Consensus 62 V~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~---~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEP 138 (592)
|.||+.+..+... ..+..+.+++++++++.+||.+ ..+. ++.+|||||||||+||+||+.+|++||||||
T Consensus 123 v~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gL~~~~~~~~~-----~~~~LSgGq~QRv~iA~AL~~~P~lLllDEP 195 (623)
T PRK10261 123 VGEQIAESIRLHQ--GASREEAMVEAKRMLDQVRIPEAQTILSR-----YPHQLSGGMRQRVMIAMALSCRPAVLIADEP 195 (623)
T ss_pred HHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHCCCCChhhHHhC-----CCccCCHHHHHHHHHHHHHhCCCCEEEEeCC
Confidence 9999999865421 2345566688999999999964 3443 4567999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCChhHHHhhhceEEEecCCeEeeecChhhH
Q 048028 139 TSGLDSTSAFMVVNVLQRIAKS-GSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNETPSNL 199 (592)
Q Consensus 139 tsgLD~~~~~~i~~~l~~la~~-g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~~~~ 199 (592)
|+|||+.++.++.++|++++++ |+|||++||++. .+.++||||++|++|+++..|+++++
T Consensus 196 t~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl~-~~~~~adri~vl~~G~i~~~g~~~~~ 256 (623)
T PRK10261 196 TTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMG-VVAEIADRVLVMYQGEAVETGSVEQI 256 (623)
T ss_pred CCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEeeCCeecccCCHHHh
Confidence 9999999999999999999865 899999999997 68899999999999999999998776
No 242
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.7e-35 Score=328.28 Aligned_cols=192 Identities=22% Similarity=0.432 Sum_probs=159.9
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCcc----cccceeEEEccCC---CCCCCCCHHHHHHHHHHcc
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLESK----LLKIISAYVMQDD---LLFPMLTVEETLMFAAEFR 73 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~~----~~~~~~~yv~Q~~---~l~~~lTV~E~l~f~~~l~ 73 (592)
++|+||||||||||+|+|+|+.++ +.+|+|.++|++++.. ..++.++|++|++ .+++.+||.||+.+.....
T Consensus 291 ~~l~G~NGsGKSTLlk~i~Gl~~~-~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~ 369 (506)
T PRK13549 291 LGIAGLVGAGRTELVQCLFGAYPG-RWEGEIFIDGKPVKIRNPQQAIAQGIAMVPEDRKRDGIVPVMGVGKNITLAALDR 369 (506)
T ss_pred EEEeCCCCCCHHHHHHHHhCCCCC-CCCcEEEECCEECCCCCHHHHHHCCCEEeCcchhhCCCcCCCCHHHHhhhhhhhh
Confidence 589999999999999999999863 1359999999887531 2345689999995 4788999999998753211
Q ss_pred C-C-CCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHH
Q 048028 74 L-P-RSVTKTKKQERVEALINQLGLR-SAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMV 150 (592)
Q Consensus 74 ~-~-~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i 150 (592)
. . ...++++.+++++++++.+++. +..|+.++ .|||||||||+||++|+.+|++|+|||||+|||+.++..+
T Consensus 370 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----~LSgG~kqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l 444 (506)
T PRK13549 370 FTGGSRIDDAAELKTILESIQRLKVKTASPELAIA-----RLSGGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEI 444 (506)
T ss_pred hccCcccChHHHHHHHHHHHHhcCccCCCcccccc-----cCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHH
Confidence 1 0 0012334456789999999996 56666554 5999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCEEEEEecCChhHHHhhhceEEEecCCeEeeecChhhH
Q 048028 151 VNVLQRIAKSGSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNETPSNL 199 (592)
Q Consensus 151 ~~~l~~la~~g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~~~~ 199 (592)
.++|++++++|+|||++||+++ ++.++||++++|++|+++..|+++++
T Consensus 445 ~~~l~~l~~~g~tvi~~sHd~~-~~~~~~d~v~~l~~G~i~~~~~~~~~ 492 (506)
T PRK13549 445 YKLINQLVQQGVAIIVISSELP-EVLGLSDRVLVMHEGKLKGDLINHNL 492 (506)
T ss_pred HHHHHHHHHCCCEEEEECCCHH-HHHHhCCEEEEEECCEEEEEeccccC
Confidence 9999999988999999999997 68899999999999999998887654
No 243
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=100.00 E-value=2.7e-35 Score=327.80 Aligned_cols=188 Identities=26% Similarity=0.415 Sum_probs=158.2
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEEC-CEe---cCc------ccccceeEEEccCCCCCCCCCHHHHHHHHH
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLN-GEV---LES------KLLKIISAYVMQDDLLFPMLTVEETLMFAA 70 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~-g~~---~~~------~~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~ 70 (592)
++|+||||||||||+|+|+|+.++. +|+|.++ |.+ +.. ...++.++|++|++.+++.+||+||+.+..
T Consensus 313 ~~l~G~NGsGKSTLl~~l~Gl~~p~--~G~i~~~~g~~~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~ 390 (520)
T TIGR03269 313 FGIVGTSGAGKTTLSKIIAGVLEPT--SGEVNVRVGDEWVDMTKPGPDGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAI 390 (520)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCCC--CeEEEEecCCccccccccchhhHHHHhhhEEEEccCcccCCCCcHHHHHHHHH
Confidence 5899999999999999999998754 5999996 632 221 123456899999999999999999998764
Q ss_pred HccCCCCCCHHHHHHHHHHHHHHcCCcc-----cccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHH
Q 048028 71 EFRLPRSVTKTKKQERVEALINQLGLRS-----AAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDST 145 (592)
Q Consensus 71 ~l~~~~~~~~~~~~~~v~~~l~~lgL~~-----~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~ 145 (592)
.+. .++++.+++++++++.+||.+ ..++. +..|||||||||+||++|+.+|++|||||||+|||+.
T Consensus 391 ~~~----~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~-----~~~LSgGq~qrv~laral~~~p~lLllDEPt~~LD~~ 461 (520)
T TIGR03269 391 GLE----LPDELARMKAVITLKMVGFDEEKAEEILDKY-----PDELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPI 461 (520)
T ss_pred HcC----CCHHHHHHHHHHHHHhCCCCCccchhhhhCC-----hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHH
Confidence 321 233334567899999999975 34444 4569999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHc-CCEEEEEecCChhHHHhhhceEEEecCCeEeeecChhhHH
Q 048028 146 SAFMVVNVLQRIAKS-GSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNETPSNLA 200 (592)
Q Consensus 146 ~~~~i~~~l~~la~~-g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~~~~~ 200 (592)
++..+++.|++++++ |.|||+++|++. ++.++|||+++|++|+++..|+++++.
T Consensus 462 ~~~~l~~~l~~l~~~~g~tvi~vsHd~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~ 516 (520)
T TIGR03269 462 TKVDVTHSILKAREEMEQTFIIVSHDMD-FVLDVCDRAALMRDGKIVKIGDPEEIV 516 (520)
T ss_pred HHHHHHHHHHHHHHHcCcEEEEEeCCHH-HHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 999999999999875 899999999997 688999999999999999999987764
No 244
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=100.00 E-value=3e-35 Score=285.04 Aligned_cols=161 Identities=32% Similarity=0.499 Sum_probs=136.4
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCc-----ccccceeEEEccCCC--CCCCCCHHHHHHHHHHcc
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLES-----KLLKIISAYVMQDDL--LFPMLTVEETLMFAAEFR 73 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~-----~~~~~~~~yv~Q~~~--l~~~lTV~E~l~f~~~l~ 73 (592)
++|+||||||||||+++|+|+.++ .+|+|.++|+++.. ...++.++|++|++. ++ ..||+||+.+.....
T Consensus 21 ~~i~G~nGsGKSTLl~~i~G~~~~--~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~-~~tv~~nl~~~~~~~ 97 (190)
T TIGR01166 21 LALLGANGAGKSTLLLHLNGLLRP--QSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQLF-AADVDQDVAFGPLNL 97 (190)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCC--CceeEEECCEEccccccchHHHHhhEEEEecChhhccc-cccHHHHHHHHHHHc
Confidence 589999999999999999999875 46999999998742 123566899999973 44 479999999875432
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHH
Q 048028 74 LPRSVTKTKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVNV 153 (592)
Q Consensus 74 ~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~ 153 (592)
..+..+.+++++++++.+||.+..++.+ +.||||||||++||++|+.+|++++|||||+|||+.++..+.+.
T Consensus 98 ---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~ 169 (190)
T TIGR01166 98 ---GLSEAEVERRVREALTAVGASGLRERPT-----HCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQMLAI 169 (190)
T ss_pred ---CCCHHHHHHHHHHHHHHcCchhhhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHH
Confidence 2334445567899999999987776655 46999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCEEEEEecCCh
Q 048028 154 LQRIAKSGSIVIMSIHQPS 172 (592)
Q Consensus 154 l~~la~~g~tvi~~~H~~~ 172 (592)
|++++++|+|||+++|+++
T Consensus 170 l~~~~~~~~tili~sH~~~ 188 (190)
T TIGR01166 170 LRRLRAEGMTVVISTHDVD 188 (190)
T ss_pred HHHHHHcCCEEEEEeeccc
Confidence 9999888999999999985
No 245
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=3.5e-35 Score=287.84 Aligned_cols=171 Identities=27% Similarity=0.357 Sum_probs=146.5
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCc--ccccceeEEEccCCCCCCCCCHHHHHHHHHHccCCCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLES--KLLKIISAYVMQDDLLFPMLTVEETLMFAAEFRLPRSV 78 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~--~~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~~~~~ 78 (592)
++|+||||||||||+++|+|..++. +|+|.++|+++.. ...++.++|++|++.+++.+||.||+.+....+.
T Consensus 30 ~~l~G~nGsGKSTLl~~l~G~~~p~--~G~v~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~---- 103 (204)
T PRK13538 30 VQIEGPNGAGKTSLLRILAGLARPD--AGEVLWQGEPIRRQRDEYHQDLLYLGHQPGIKTELTALENLRFYQRLHG---- 103 (204)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCCC--CcEEEECCEEcccchHHhhhheEEeCCccccCcCCcHHHHHHHHHHhcC----
Confidence 4899999999999999999998754 5999999998753 2345668999999999999999999988764321
Q ss_pred CHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 048028 79 TKTKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVNVLQRIA 158 (592)
Q Consensus 79 ~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~la 158 (592)
.+.+++++++++.+||.+..++.+ +.||||||||++||++|+++|++++|||||+|||+.++..+.+.|++++
T Consensus 104 --~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~ 176 (204)
T PRK13538 104 --PGDDEALWEALAQVGLAGFEDVPV-----RQLSAGQQRRVALARLWLTRAPLWILDEPFTAIDKQGVARLEALLAQHA 176 (204)
T ss_pred --ccHHHHHHHHHHHcCCHHHhhCCh-----hhcCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHH
Confidence 123467889999999987776654 4699999999999999999999999999999999999999999999998
Q ss_pred HcCCEEEEEecCChhHHHhhhceEEEe
Q 048028 159 KSGSIVIMSIHQPSYRILSLLDRLIIL 185 (592)
Q Consensus 159 ~~g~tvi~~~H~~~~~i~~~~D~v~ll 185 (592)
++|.|+|+++|+++ .+.+..+|++++
T Consensus 177 ~~~~tiii~sh~~~-~i~~~~~~~~~~ 202 (204)
T PRK13538 177 EQGGMVILTTHQDL-PVASDKVRKLRL 202 (204)
T ss_pred HCCCEEEEEecChh-hhccCCceEEec
Confidence 77899999999997 466666777776
No 246
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.7e-35 Score=327.80 Aligned_cols=191 Identities=21% Similarity=0.422 Sum_probs=160.1
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCcc----cccceeEEEccCC---CCCCCCCHHHHHHHHHHcc
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLESK----LLKIISAYVMQDD---LLFPMLTVEETLMFAAEFR 73 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~~----~~~~~~~yv~Q~~---~l~~~lTV~E~l~f~~~l~ 73 (592)
++|+||||||||||+|+|+|+.++ .+|+|.++|+++... ..++.++|++|++ .+++.+||.||+.+.....
T Consensus 282 ~~iiG~NGsGKSTLlk~l~G~~~p--~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~ 359 (501)
T PRK11288 282 VGLFGLVGAGRSELMKLLYGATRR--TAGQVYLDGKPIDIRSPRDAIRAGIMLCPEDRKAEGIIPVHSVADNINISARRH 359 (501)
T ss_pred EEEEcCCCCCHHHHHHHHcCCCcC--CCceEEECCEECCCCCHHHHHhCCCEEcCcCHhhCCCcCCCCHHHHhccccchh
Confidence 589999999999999999999875 459999999887421 2345689999996 4899999999998753211
Q ss_pred C-CCC--CCHHHHHHHHHHHHHHcCCc-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHH
Q 048028 74 L-PRS--VTKTKKQERVEALINQLGLR-SAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFM 149 (592)
Q Consensus 74 ~-~~~--~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~ 149 (592)
. +.. ....+.+++++++++.+++. +..++.++ .|||||||||+||++|+.+|++|||||||+|||+.++.+
T Consensus 360 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----~LSgGq~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~ 434 (501)
T PRK11288 360 HLRAGCLINNRWEAENADRFIRSLNIKTPSREQLIM-----NLSGGNQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHE 434 (501)
T ss_pred hcccccccChHHHHHHHHHHHHhcCcccCCccCccc-----cCCHHHHHHHHHHHHHccCCCEEEEcCCCCCCCHhHHHH
Confidence 0 001 12233446789999999994 66776665 599999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCEEEEEecCChhHHHhhhceEEEecCCeEeeecChhhH
Q 048028 150 VVNVLQRIAKSGSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNETPSNL 199 (592)
Q Consensus 150 i~~~l~~la~~g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~~~~ 199 (592)
++++|++++++|.|||++|||++ ++.++||++++|++|++++.|+++++
T Consensus 435 l~~~l~~l~~~g~tviivsHd~~-~~~~~~d~i~~l~~g~i~~~~~~~~~ 483 (501)
T PRK11288 435 IYNVIYELAAQGVAVLFVSSDLP-EVLGVADRIVVMREGRIAGELAREQA 483 (501)
T ss_pred HHHHHHHHHhCCCEEEEECCCHH-HHHhhCCEEEEEECCEEEEEEccccC
Confidence 99999999988999999999997 68899999999999999999887653
No 247
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.7e-35 Score=302.95 Aligned_cols=195 Identities=24% Similarity=0.418 Sum_probs=157.7
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCC---CCceeEEEECCEecCc-----ccccceeEEEccCCCCCCCCCHHHHHHHHHHc
Q 048028 1 MAILGASGAGKTTLMDALAGRIEK---ESLQGAVTLNGEVLES-----KLLKIISAYVMQDDLLFPMLTVEETLMFAAEF 72 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~---~~~~G~I~i~g~~~~~-----~~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l 72 (592)
++|+|||||||||||++|+|+.++ .+.+|+|.++|.++.. ...++.++|++|++.+++. ||+||+.+....
T Consensus 74 ~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~ 152 (305)
T PRK14264 74 TALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVNLVELRKRVGMVFQSPNPFPK-SIRENISYGPRK 152 (305)
T ss_pred EEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccccHHHHhhceEEEccCCccccc-cHHHHHHhHHhh
Confidence 489999999999999999999753 1357999999998743 1345678999999988874 999999987543
Q ss_pred cCC---------CCCC-HHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCC
Q 048028 73 RLP---------RSVT-KTKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGL 142 (592)
Q Consensus 73 ~~~---------~~~~-~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgL 142 (592)
+.. .... ....+++++++++.+++.+...... +..++.|||||||||+||++|+.+|+||||||||+||
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgL 231 (305)
T PRK14264 153 HGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVNDRL-DDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASAL 231 (305)
T ss_pred cccccccccccccccCchHHHHHHHHHHHHHcCCchhhhHHh-cCccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccC
Confidence 210 0011 1233567889999999854332222 3456789999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHcCCEEEEEecCChhHHHhhhceE-EEecCCeEeeecChhhH
Q 048028 143 DSTSAFMVVNVLQRIAKSGSIVIMSIHQPSYRILSLLDRL-IILSHGQSVYNETPSNL 199 (592)
Q Consensus 143 D~~~~~~i~~~l~~la~~g~tvi~~~H~~~~~i~~~~D~v-~ll~~G~~v~~g~~~~~ 199 (592)
|+.++..+.+.|+++++ +.|||+++|+++ .+.+++|++ ++|++|+++..|+++++
T Consensus 232 D~~~~~~l~~~L~~~~~-~~tiiivtH~~~-~i~~~~d~i~~~l~~G~i~~~g~~~~~ 287 (305)
T PRK14264 232 DPIATSKIEDLIEELAE-EYTVVVVTHNMQ-QAARISDQTAVFLTGGELVEYDDTDKI 287 (305)
T ss_pred CHHHHHHHHHHHHHHhc-CCEEEEEEcCHH-HHHHhcCEEEEEecCCEEEEeCCHHHH
Confidence 99999999999999987 489999999997 588899996 57899999999998765
No 248
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=2.8e-35 Score=316.72 Aligned_cols=190 Identities=28% Similarity=0.452 Sum_probs=164.2
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEec--Cc---ccccceeEEEccCC--CCCCCCCHHHHHHHHHHcc
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVL--ES---KLLKIISAYVMQDD--LLFPMLTVEETLMFAAEFR 73 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~--~~---~~~~~~~~yv~Q~~--~l~~~lTV~E~l~f~~~l~ 73 (592)
+||+|+||||||||.|+|+|+.+| .+|+|.++|.+. +. ...++.+-+|+||+ .|.|.+||++++.-.....
T Consensus 320 lglVGeSGsGKSTlar~i~gL~~P--~~G~i~~~g~~~~~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~ 397 (539)
T COG1123 320 LGLVGESGSGKSTLARILAGLLPP--SSGSIIFDGQDLDLTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIH 397 (539)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCC--CCceEEEeCcccccccchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhh
Confidence 589999999999999999999986 459999999873 21 23445667788876 6999999999998876654
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHH
Q 048028 74 LPRSVTKTKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVNV 153 (592)
Q Consensus 74 ~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~ 153 (592)
.+ ....++++++.++++..||... ..++++.+||||||||++|||||+.+|++|++|||||.||+..+.+++++
T Consensus 398 ~~--~~~~~~~~rv~~ll~~VgL~~~----~l~ryP~elSGGQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnL 471 (539)
T COG1123 398 GG--GSGAERRARVAELLELVGLPPE----FLDRYPHELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNL 471 (539)
T ss_pred cc--cchHHHHHHHHHHHHHcCCCHH----HHhcCchhcCcchhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHH
Confidence 32 2356677889999999999852 23567788999999999999999999999999999999999999999999
Q ss_pred HHHHHHc-CCEEEEEecCChhHHHhhhceEEEecCCeEeeecChhhH
Q 048028 154 LQRIAKS-GSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNETPSNL 199 (592)
Q Consensus 154 l~~la~~-g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~~~~ 199 (592)
|+++.++ |.|.++++||.. -+..+||||.+|++|++|..|+.+++
T Consensus 472 l~~lq~e~g~t~lfISHDl~-vV~~i~drv~vm~~G~iVE~G~~~~v 517 (539)
T COG1123 472 LKDLQEELGLTYLFISHDLA-VVRYIADRVAVMYDGRIVEEGPTEKV 517 (539)
T ss_pred HHHHHHHhCCEEEEEeCCHH-HHHhhCceEEEEECCeEEEeCCHHHH
Confidence 9999876 999999999998 58999999999999999999988776
No 249
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=100.00 E-value=1.6e-35 Score=339.97 Aligned_cols=181 Identities=30% Similarity=0.437 Sum_probs=155.7
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCc---ccccceeEEEccCCCCCCCCCHHHHHHHHHHccCCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLES---KLLKIISAYVMQDDLLFPMLTVEETLMFAAEFRLPRS 77 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~---~~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~~~~ 77 (592)
+||+||||||||||+|+|+|+.+|. +|+|.+||+++.. ..+|+.++||+|++.+|+. |++||+.++. |
T Consensus 482 vaIvG~sGsGKSTLlklL~gl~~p~--~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~g-TI~eNi~~~~----~-- 552 (686)
T TIGR03797 482 VAIVGPSGSGKSTLLRLLLGFETPE--SGSVFYDGQDLAGLDVQAVRRQLGVVLQNGRLMSG-SIFENIAGGA----P-- 552 (686)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCCC--CCEEEECCEEcCcCCHHHHHhccEEEccCCccCcc-cHHHHHhcCC----C--
Confidence 5899999999999999999998864 5999999998764 4578889999999999987 9999998742 1
Q ss_pred CCHHHHHHHHHHHHHHcCCcc-------cccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHH
Q 048028 78 VTKTKKQERVEALINQLGLRS-------AAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMV 150 (592)
Q Consensus 78 ~~~~~~~~~v~~~l~~lgL~~-------~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i 150 (592)
.+ ++++.++++..|+.+ ..||.+|+ ....||||||||++|||||+++|++|+||||||+||+.+.+++
T Consensus 553 ~~----~e~i~~al~~a~l~~~i~~lp~G~dt~ige-~G~~LSGGQrQRialARAll~~p~iLiLDEpTS~LD~~te~~i 627 (686)
T TIGR03797 553 LT----LDEAWEAARMAGLAEDIRAMPMGMHTVISE-GGGTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIV 627 (686)
T ss_pred CC----HHHHHHHHHHcCcHHHHHhccccccccccC-CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHH
Confidence 22 234666677666653 45788875 4578999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCEEEEEecCChhHHHhhhceEEEecCCeEeeecChhhHH
Q 048028 151 VNVLQRIAKSGSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNETPSNLA 200 (592)
Q Consensus 151 ~~~l~~la~~g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~~~~~ 200 (592)
.+.|+++ ++|+|+++|+++ ..+.+|+|++|++|+++..|+.+++.
T Consensus 628 ~~~L~~~---~~T~IiItHr~~--~i~~~D~Iivl~~G~iv~~G~~~~Ll 672 (686)
T TIGR03797 628 SESLERL---KVTRIVIAHRLS--TIRNADRIYVLDAGRVVQQGTYDELM 672 (686)
T ss_pred HHHHHHh---CCeEEEEecChH--HHHcCCEEEEEECCEEEEECCHHHHH
Confidence 9999886 579999999996 45779999999999999999998874
No 250
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=100.00 E-value=3.2e-35 Score=326.17 Aligned_cols=191 Identities=22% Similarity=0.326 Sum_probs=158.0
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCcc----cccceeEEEccCC---CCCCCCCHHHHHHHHHHcc
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLESK----LLKIISAYVMQDD---LLFPMLTVEETLMFAAEFR 73 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~~----~~~~~~~yv~Q~~---~l~~~lTV~E~l~f~~~l~ 73 (592)
++|+||||||||||||+|+|+.+|. +|+|.++|+++... ..++.++|++|++ .+++.+|+.||+......+
T Consensus 292 ~~l~G~NGsGKSTLl~~i~Gl~~p~--~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~l~~~~t~~~~l~~~~~~~ 369 (510)
T PRK15439 292 LGLAGVVGAGRTELAETLYGLRPAR--GGRIMLNGKEINALSTAQRLARGLVYLPEDRQSSGLYLDAPLAWNVCALTHNR 369 (510)
T ss_pred EEEECCCCCCHHHHHHHHcCCCCCC--CcEEEECCEECCCCCHHHHHhCCcEECCCChhhCCccCCCcHHHHHHhhhhhh
Confidence 5899999999999999999998754 59999999987532 1234689999984 5888999999986431111
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHH
Q 048028 74 LPRSVTKTKKQERVEALINQLGLR-SAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVN 152 (592)
Q Consensus 74 ~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~ 152 (592)
.+......+.+++++++++.+||+ +..+++++ .|||||||||+||++|+.+|++|||||||+|||+.++..+.+
T Consensus 370 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----~LSgG~kqrl~la~al~~~p~lLlLDEPt~gLD~~~~~~l~~ 444 (510)
T PRK15439 370 RGFWIKPARENAVLERYRRALNIKFNHAEQAAR-----TLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQ 444 (510)
T ss_pred hccccChHHHHHHHHHHHHHcCCCCCCccCccc-----cCCcHHHHHHHHHHHHhhCCCEEEECCCCcCcChhHHHHHHH
Confidence 111111223446789999999997 66766654 599999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCEEEEEecCChhHHHhhhceEEEecCCeEeeecChhhH
Q 048028 153 VLQRIAKSGSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNETPSNL 199 (592)
Q Consensus 153 ~l~~la~~g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~~~~ 199 (592)
.|++++++|.|||+++|+++ ++.++|||+++|++|+++..|+++++
T Consensus 445 ~l~~l~~~g~tiIivsHd~~-~i~~~~d~i~~l~~G~i~~~~~~~~~ 490 (510)
T PRK15439 445 LIRSIAAQNVAVLFISSDLE-EIEQMADRVLVMHQGEISGALTGAAI 490 (510)
T ss_pred HHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEECCEEEEEEccccC
Confidence 99999888999999999997 68899999999999999998877653
No 251
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.5e-35 Score=296.88 Aligned_cols=184 Identities=29% Similarity=0.452 Sum_probs=145.9
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCc---ccccceeEEEccCCCCCCCCCHHHHHHHHHHccCCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLES---KLLKIISAYVMQDDLLFPMLTVEETLMFAAEFRLPRS 77 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~---~~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~~~~ 77 (592)
++|+||||||||||+++|+|+.++ .+|+|.++|+++.. ...++.++|++|+..+++ .||+||+.+... .
T Consensus 30 ~~l~G~nGsGKSTLl~~i~Gl~~~--~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~-----~ 101 (236)
T cd03253 30 VAIVGPSGSGKSTILRLLFRFYDV--SSGSILIDGQDIREVTLDSLRRAIGVVPQDTVLFN-DTIGYNIRYGRP-----D 101 (236)
T ss_pred EEEECCCCCCHHHHHHHHhcccCC--CCCEEEECCEEhhhCCHHHHHhhEEEECCCChhhc-chHHHHHhhcCC-----C
Confidence 489999999999999999999875 45999999988753 234566899999998886 699999987531 1
Q ss_pred CCHHHHHHHHHHHHHHcCCccc-------ccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHH
Q 048028 78 VTKTKKQERVEALINQLGLRSA-------AKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMV 150 (592)
Q Consensus 78 ~~~~~~~~~v~~~l~~lgL~~~-------~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i 150 (592)
.+.. .+.+.++..++.+. .++.+ +..++.|||||||||+||++|+.+|++++|||||+|||+.+...+
T Consensus 102 ~~~~----~~~~~~~~~~l~~~~~~l~~~~~~~~-~~~~~~LS~G~~~rl~la~aL~~~p~llllDEP~~~LD~~~~~~l 176 (236)
T cd03253 102 ATDE----EVIEAAKAAQIHDKIMRFPDGYDTIV-GERGLKLSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREI 176 (236)
T ss_pred CCHH----HHHHHHHHcCcHHHHHhccccccchh-hcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHH
Confidence 1111 12233333333222 12222 234567999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCEEEEEecCChhHHHhhhceEEEecCCeEeeecChhhHH
Q 048028 151 VNVLQRIAKSGSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNETPSNLA 200 (592)
Q Consensus 151 ~~~l~~la~~g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~~~~~ 200 (592)
.+.|+++++ |+|||+++|+++ .+. .+|++++|++|+++..|+.+++.
T Consensus 177 ~~~l~~~~~-~~tiii~sh~~~-~~~-~~d~~~~l~~g~i~~~~~~~~~~ 223 (236)
T cd03253 177 QAALRDVSK-GRTTIVIAHRLS-TIV-NADKIIVLKDGRIVERGTHEELL 223 (236)
T ss_pred HHHHHHhcC-CCEEEEEcCCHH-HHH-hCCEEEEEECCEEEeeCCHHHHh
Confidence 999999987 999999999997 454 59999999999999998877653
No 252
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=3e-35 Score=332.48 Aligned_cols=183 Identities=25% Similarity=0.414 Sum_probs=158.5
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCc---ccccceeEEEccCCCCCCCCCHHHHHHHHHHccCCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLES---KLLKIISAYVMQDDLLFPMLTVEETLMFAAEFRLPRS 77 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~---~~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~~~~ 77 (592)
+||+|+||||||||+|+|+|+.+|. +|+|.+||.+++. ..+++.++||+|++.+|+. |++||+.++. .
T Consensus 370 iaIvG~SGsGKSTLl~lL~gl~~p~--~G~I~idg~~i~~~~~~~l~~~i~~v~Q~~~lF~~-Ti~~NI~~~~------~ 440 (592)
T PRK10790 370 VALVGHTGSGKSTLASLLMGYYPLT--EGEIRLDGRPLSSLSHSVLRQGVAMVQQDPVVLAD-TFLANVTLGR------D 440 (592)
T ss_pred EEEECCCCCCHHHHHHHHhcccCCC--CceEEECCEEhhhCCHHHHHhheEEEccCCccccc-hHHHHHHhCC------C
Confidence 5899999999999999999998865 5999999998764 4578889999999999997 9999998752 1
Q ss_pred CCHHHHHHHHHHHHHHcCCcc-------cccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHH
Q 048028 78 VTKTKKQERVEALINQLGLRS-------AAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMV 150 (592)
Q Consensus 78 ~~~~~~~~~v~~~l~~lgL~~-------~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i 150 (592)
.+ +++++++++..|+.+ -.||.+|+ ....||||||||++|||||+++|++|+||||||+||+.+.+.+
T Consensus 441 ~~----d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e-~g~~LSGGqrQRialARaLl~~~~illlDEpts~LD~~t~~~i 515 (592)
T PRK10790 441 IS----EEQVWQALETVQLAELARSLPDGLYTPLGE-QGNNLSVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAI 515 (592)
T ss_pred CC----HHHHHHHHHHcCcHHHHHhccccccccccC-CCCCCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHH
Confidence 12 245677777777653 45788875 4567999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCEEEEEecCChhHHHhhhceEEEecCCeEeeecChhhHH
Q 048028 151 VNVLQRIAKSGSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNETPSNLA 200 (592)
Q Consensus 151 ~~~l~~la~~g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~~~~~ 200 (592)
.+.|+++.+ ++|+|+++|+++ ....+|+|++|++|+++..|+.+++.
T Consensus 516 ~~~l~~~~~-~~tvIivtHr~~--~l~~~D~ii~l~~G~i~~~G~~~~L~ 562 (592)
T PRK10790 516 QQALAAVRE-HTTLVVIAHRLS--TIVEADTILVLHRGQAVEQGTHQQLL 562 (592)
T ss_pred HHHHHHHhC-CCEEEEEecchH--HHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 999999865 699999999996 46779999999999999999999874
No 253
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=100.00 E-value=5e-35 Score=286.08 Aligned_cols=168 Identities=27% Similarity=0.369 Sum_probs=146.3
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCc--ccccceeEEEccCCCCCCCCCHHHHHHHHHHccCCCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLES--KLLKIISAYVMQDDLLFPMLTVEETLMFAAEFRLPRSV 78 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~--~~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~~~~~ 78 (592)
++|+|+||||||||+++|+|+.++. +|+|.++|.++.. ...++.++|++|++.+++.+||+||+.+....
T Consensus 29 ~~i~G~nGsGKSTLl~~l~G~~~~~--~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~------ 100 (201)
T cd03231 29 LQVTGPNGSGKTTLLRILAGLSPPL--AGRVLLNGGPLDFQRDSIARGLLYLGHAPGIKTTLSVLENLRFWHAD------ 100 (201)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCCC--CcEEEECCEecccccHHhhhheEEeccccccCCCcCHHHHHHhhccc------
Confidence 5899999999999999999998754 5999999988643 23456789999999999999999999875311
Q ss_pred CHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 048028 79 TKTKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVNVLQRIA 158 (592)
Q Consensus 79 ~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~la 158 (592)
..+++++++++.+|+.+..++.+ +.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++
T Consensus 101 ---~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~ 172 (201)
T cd03231 101 ---HSDEQVEEALARVGLNGFEDRPV-----AQLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHC 172 (201)
T ss_pred ---ccHHHHHHHHHHcCChhhhcCch-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Confidence 12456889999999987776654 4699999999999999999999999999999999999999999999998
Q ss_pred HcCCEEEEEecCChhHHHhhhceEEEe
Q 048028 159 KSGSIVIMSIHQPSYRILSLLDRLIIL 185 (592)
Q Consensus 159 ~~g~tvi~~~H~~~~~i~~~~D~v~ll 185 (592)
++|+|+|+++|++. ++...+|+++++
T Consensus 173 ~~g~tiii~sH~~~-~~~~~~~~~~~~ 198 (201)
T cd03231 173 ARGGMVVLTTHQDL-GLSEAGARELDL 198 (201)
T ss_pred hCCCEEEEEecCch-hhhhccceeEec
Confidence 88999999999987 578899999887
No 254
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.3e-35 Score=279.75 Aligned_cols=143 Identities=35% Similarity=0.576 Sum_probs=130.3
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCc--ccccceeEEEccCCCCCCCCCHHHHHHHHHHccCCCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLES--KLLKIISAYVMQDDLLFPMLTVEETLMFAAEFRLPRSV 78 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~--~~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~~~~~ 78 (592)
++|+||||||||||+++|+|+.++ .+|+|.++|+++.. ...++.++|++|++.+++.+|++||+.
T Consensus 29 ~~i~G~nGsGKStLl~~l~G~~~~--~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~~~----------- 95 (173)
T cd03230 29 YGLLGPNGAGKTTLIKIILGLLKP--DSGEIKVLGKDIKKEPEEVKRRIGYLPEEPSLYENLTVRENLK----------- 95 (173)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCC--CCeEEEECCEEcccchHhhhccEEEEecCCccccCCcHHHHhh-----------
Confidence 489999999999999999999875 46999999998753 234567899999999999999999873
Q ss_pred CHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 048028 79 TKTKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVNVLQRIA 158 (592)
Q Consensus 79 ~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~la 158 (592)
||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++
T Consensus 96 ---------------------------------LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~ 142 (173)
T cd03230 96 ---------------------------------LSGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELK 142 (173)
T ss_pred ---------------------------------cCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998
Q ss_pred HcCCEEEEEecCChhHHHhhhceEEEecCCeE
Q 048028 159 KSGSIVIMSIHQPSYRILSLLDRLIILSHGQS 190 (592)
Q Consensus 159 ~~g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~ 190 (592)
++|.|+|+++|+++ ++.+.+|++++|++|++
T Consensus 143 ~~g~tiii~th~~~-~~~~~~d~i~~l~~g~i 173 (173)
T cd03230 143 KEGKTILLSSHILE-EAERLCDRVAILNNGRI 173 (173)
T ss_pred HCCCEEEEECCCHH-HHHHhCCEEEEEeCCCC
Confidence 88899999999987 68889999999999874
No 255
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-34 Score=295.83 Aligned_cols=192 Identities=21% Similarity=0.371 Sum_probs=156.4
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCC---ceeEEEECCEecCc-------ccccceeEEEccCCCCCCCCCHHHHHHHHH
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKES---LQGAVTLNGEVLES-------KLLKIISAYVMQDDLLFPMLTVEETLMFAA 70 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~---~~G~I~i~g~~~~~-------~~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~ 70 (592)
++|+||||||||||+++|+|+.++.+ .+|+|.++|.+++. ...++.++|++|++.+++. ||+||+.+..
T Consensus 45 ~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~-tv~eni~~~~ 123 (265)
T PRK14252 45 TALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSPEVDPIEVRMRISMVFQKPNPFPK-SIFENVAYGL 123 (265)
T ss_pred EEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCccccccccccCHHHHhccEEEEccCCcCCcc-hHHHHHHhHH
Confidence 58999999999999999999986422 57999999976531 2345678999999999986 9999998765
Q ss_pred HccCCCCCCH-HHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHH
Q 048028 71 EFRLPRSVTK-TKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFM 149 (592)
Q Consensus 71 ~l~~~~~~~~-~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~ 149 (592)
... .... ...+++++++++.+++.+...... +..+..||||||||++||++|+.+|++++|||||+|||+.++..
T Consensus 124 ~~~---~~~~~~~~~~~~~~~l~~~~l~~~l~~~~-~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~ 199 (265)
T PRK14252 124 RIR---GVKRRSILEERVENALRNAALWDEVKDRL-GDLAFNLSGGQQQRLCIARALATDPEILLFDEPTSALDPIATAS 199 (265)
T ss_pred HHc---CCChHHHHHHHHHHHHHHcCCchhhhHHH-hCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHH
Confidence 432 1122 223467888888888742111111 23456799999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCEEEEEecCChhHHHhhhceEEEecCCeEeeecChhhH
Q 048028 150 VVNVLQRIAKSGSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNETPSNL 199 (592)
Q Consensus 150 i~~~l~~la~~g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~~~~ 199 (592)
+.+.|+++++ ++|||+++|+++ ++.+++||+++|++|+++..|+.+++
T Consensus 200 l~~~l~~l~~-~~tiiivth~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~ 247 (265)
T PRK14252 200 IEELISDLKN-KVTILIVTHNMQ-QAARVSDYTAYMYMGELIEFGATDTI 247 (265)
T ss_pred HHHHHHHHHh-CCEEEEEecCHH-HHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999976 689999999997 68889999999999999999998765
No 256
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=100.00 E-value=5.1e-35 Score=324.13 Aligned_cols=190 Identities=23% Similarity=0.456 Sum_probs=158.2
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCc----ccccceeEEEccCC---CCCCCCCHHHHHHHHHH--
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLES----KLLKIISAYVMQDD---LLFPMLTVEETLMFAAE-- 71 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~----~~~~~~~~yv~Q~~---~l~~~lTV~E~l~f~~~-- 71 (592)
++|+||||||||||||+|+|..+|. .+|+|.++|+++.. ...++.++|++|+. .+++.+||+||+.+...
T Consensus 289 ~~l~G~NGsGKSTLl~~l~G~~~p~-~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~ 367 (500)
T TIGR02633 289 LGVAGLVGAGRTELVQALFGAYPGK-FEGNVFINGKPVDIRNPAQAIRAGIAMVPEDRKRHGIVPILGVGKNITLSVLKS 367 (500)
T ss_pred EEEeCCCCCCHHHHHHHHhCCCCCC-CCeEEEECCEECCCCCHHHHHhCCCEEcCcchhhCCcCCCCCHHHHhcchhhhh
Confidence 5899999999999999999998741 36999999998753 12355689999995 58999999999987532
Q ss_pred ccCCCCCCHHHHHHHHHHHHHHcCCcc-cccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHH
Q 048028 72 FRLPRSVTKTKKQERVEALINQLGLRS-AAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMV 150 (592)
Q Consensus 72 l~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i 150 (592)
..........+.+++++++++.+++.+ ..++.++ .|||||||||+||++|+.+|++|+|||||+|||+.++..+
T Consensus 368 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----~LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l 442 (500)
T TIGR02633 368 FCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPIG-----RLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEI 442 (500)
T ss_pred hccCCcCCHHHHHHHHHHHHHhcCccCCCccCccc-----cCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHH
Confidence 110011223444577899999999964 4666554 5999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCEEEEEecCChhHHHhhhceEEEecCCeEeeecChh
Q 048028 151 VNVLQRIAKSGSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNETPS 197 (592)
Q Consensus 151 ~~~l~~la~~g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~~ 197 (592)
.+.|++++++|.|||++|||++ ++.++||++++|++|+++..++.+
T Consensus 443 ~~~l~~l~~~g~tviivsHd~~-~~~~~~d~v~~l~~G~i~~~~~~~ 488 (500)
T TIGR02633 443 YKLINQLAQEGVAIIVVSSELA-EVLGLSDRVLVIGEGKLKGDFVNH 488 (500)
T ss_pred HHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEECCEEEEEEccc
Confidence 9999999988999999999997 688999999999999999877554
No 257
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=100.00 E-value=5.1e-35 Score=291.02 Aligned_cols=180 Identities=26% Similarity=0.392 Sum_probs=148.1
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCc---ccccceeEEEccCCCCCCCCCHHHHHHHHHHccCCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLES---KLLKIISAYVMQDDLLFPMLTVEETLMFAAEFRLPRS 77 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~---~~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~~~~ 77 (592)
++|+||||||||||+++|+|+.++ .+|+|.++|.++.. ...++.++|++|++.+++. ||+||+.+....+.
T Consensus 36 ~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~~-tv~enl~~~~~~~~--- 109 (225)
T PRK10247 36 KLITGPSGCGKSTLLKIVASLISP--TSGTLLFEGEDISTLKPEIYRQQVSYCAQTPTLFGD-TVYDNLIFPWQIRN--- 109 (225)
T ss_pred EEEECCCCCCHHHHHHHHhcccCC--CCCeEEECCEEcCcCCHHHHHhccEEEecccccccc-cHHHHHHhHHhhcC---
Confidence 489999999999999999999875 46999999988653 2245678999999988875 99999988654321
Q ss_pred CCHHHHHHHHHHHHHHcCCc-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHH
Q 048028 78 VTKTKKQERVEALINQLGLR-SAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVNVLQR 156 (592)
Q Consensus 78 ~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~ 156 (592)
. ...+++++++++.+++. ...++. ++.|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|++
T Consensus 110 ~--~~~~~~~~~~l~~~~l~~~~~~~~-----~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~ 182 (225)
T PRK10247 110 Q--QPDPAIFLDDLERFALPDTILTKN-----IAELSGGEKQRISLIRNLQFMPKVLLLDEITSALDESNKHNVNEIIHR 182 (225)
T ss_pred C--ChHHHHHHHHHHHcCCChHHhcCC-----cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 1 11235678999999995 345544 456999999999999999999999999999999999999999999999
Q ss_pred HHHc-CCEEEEEecCChhHHHhhhceEEEec-CCeEeeecC
Q 048028 157 IAKS-GSIVIMSIHQPSYRILSLLDRLIILS-HGQSVYNET 195 (592)
Q Consensus 157 la~~-g~tvi~~~H~~~~~i~~~~D~v~ll~-~G~~v~~g~ 195 (592)
++++ |.|||+++|+++ ++ +.+|++++|+ ++..+.+|.
T Consensus 183 ~~~~~~~tvii~sh~~~-~~-~~~d~i~~l~~~~~~~~~~~ 221 (225)
T PRK10247 183 YVREQNIAVLWVTHDKD-EI-NHADKVITLQPHAGEMQEAR 221 (225)
T ss_pred HHHhcCCEEEEEECChH-HH-HhCCEEEEEecccchHhhhh
Confidence 9864 899999999997 45 4699999995 455555554
No 258
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=100.00 E-value=2.3e-34 Score=292.55 Aligned_cols=180 Identities=19% Similarity=0.259 Sum_probs=154.9
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCcccccceeEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCH
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLESKLLKIISAYVMQDDLLFPMLTVEETLMFAAEFRLPRSVTK 80 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~ 80 (592)
++|+||||||||||+++|+|+.++. +|+|.++|+ ++++.|+..+.+.+|+.||+.+..... ..+.
T Consensus 53 ~~liG~NGsGKSTLlk~L~Gl~~p~--~G~I~~~g~----------~~~~~~~~~~~~~~tv~enl~~~~~~~---~~~~ 117 (264)
T PRK13546 53 IGLVGINGSGKSTLSNIIGGSLSPT--VGKVDRNGE----------VSVIAISAGLSGQLTGIENIEFKMLCM---GFKR 117 (264)
T ss_pred EEEECCCCCCHHHHHHHHhCCcCCC--ceEEEECCE----------EeEEecccCCCCCCcHHHHHHHHHHHc---CCCH
Confidence 4899999999999999999998754 599999985 356777777788899999998765432 2234
Q ss_pred HHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc
Q 048028 81 TKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVNVLQRIAKS 160 (592)
Q Consensus 81 ~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~la~~ 160 (592)
++..+.++++++.+++.+..++.+ +.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|++++++
T Consensus 118 ~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~~ 192 (264)
T PRK13546 118 KEIKAMTPKIIEFSELGEFIYQPV-----KKYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKEQ 192 (264)
T ss_pred HHHHHHHHHHHHHcCCchhhcCCc-----ccCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHHHHC
Confidence 445566788999999987776554 469999999999999999999999999999999999999999999999878
Q ss_pred CCEEEEEecCChhHHHhhhceEEEecCCeEeeecChhhHHH
Q 048028 161 GSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNETPSNLAQ 201 (592)
Q Consensus 161 g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~~~~~~ 201 (592)
|+|||+++|++. ++.+.+|++++|++|+++..|+++++.+
T Consensus 193 g~tiIiisH~~~-~i~~~~d~i~~l~~G~i~~~g~~~~~~~ 232 (264)
T PRK13546 193 NKTIFFVSHNLG-QVRQFCTKIAWIEGGKLKDYGELDDVLP 232 (264)
T ss_pred CCEEEEEcCCHH-HHHHHcCEEEEEECCEEEEeCCHHHHHH
Confidence 999999999987 5888999999999999999999887643
No 259
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=100.00 E-value=5.6e-35 Score=281.27 Aligned_cols=147 Identities=29% Similarity=0.520 Sum_probs=131.4
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCcc----cccceeEEEccCC---CCCCCCCHHHHHHHHHHcc
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLESK----LLKIISAYVMQDD---LLFPMLTVEETLMFAAEFR 73 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~~----~~~~~~~yv~Q~~---~l~~~lTV~E~l~f~~~l~ 73 (592)
++|+||||||||||+++|+|..++. +|+|.++|+++... ..++.++|++|+. .+++.+|++||+.+...
T Consensus 29 ~~i~G~nGsGKSTLl~~l~G~~~~~--~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~t~~e~l~~~~~-- 104 (182)
T cd03215 29 VGIAGLVGNGQTELAEALFGLRPPA--SGEITLDGKPVTRRSPRDAIRAGIAYVPEDRKREGLVLDLSVAENIALSSL-- 104 (182)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCCC--CceEEECCEECCccCHHHHHhCCeEEecCCcccCcccCCCcHHHHHHHHhh--
Confidence 4899999999999999999998754 59999999987542 2356789999984 58888999999976421
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHH
Q 048028 74 LPRSVTKTKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVNV 153 (592)
Q Consensus 74 ~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~ 153 (592)
||||||||++||++|+.+|++++|||||+|||+.++..+.+.
T Consensus 105 --------------------------------------LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~ 146 (182)
T cd03215 105 --------------------------------------LSGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRL 146 (182)
T ss_pred --------------------------------------cCHHHHHHHHHHHHHccCCCEEEECCCCcCCCHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCEEEEEecCChhHHHhhhceEEEecCCeE
Q 048028 154 LQRIAKSGSIVIMSIHQPSYRILSLLDRLIILSHGQS 190 (592)
Q Consensus 154 l~~la~~g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~ 190 (592)
|++++++|+|+|+++|+++ ++.+++|++++|++|++
T Consensus 147 l~~~~~~~~tiii~sh~~~-~~~~~~d~v~~l~~G~i 182 (182)
T cd03215 147 IRELADAGKAVLLISSELD-ELLGLCDRILVMYEGRI 182 (182)
T ss_pred HHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEecCCcC
Confidence 9999877899999999987 68899999999999974
No 260
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=100.00 E-value=2.5e-35 Score=339.77 Aligned_cols=183 Identities=28% Similarity=0.440 Sum_probs=155.0
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCc---ccccceeEEEccCCCCCCCCCHHHHHHHHHHccCCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLES---KLLKIISAYVMQDDLLFPMLTVEETLMFAAEFRLPRS 77 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~---~~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~~~~ 77 (592)
+||+||||||||||+|+|+|+++|. +|+|.+||.++.. ..+|+.++||+|++.+|+. |++||+.++. | .
T Consensus 508 vaIvG~sGsGKSTLlklL~gl~~p~--~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~g-Ti~eNi~l~~----~-~ 579 (710)
T TIGR03796 508 VALVGGSGSGKSTIAKLVAGLYQPW--SGEILFDGIPREEIPREVLANSVAMVDQDIFLFEG-TVRDNLTLWD----P-T 579 (710)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCCC--CcEEEECCEeHHHCCHHHHHhheeEEecCChhhhc-cHHHHhhCCC----C-C
Confidence 5899999999999999999998864 5999999998754 4578889999999999976 9999997641 1 1
Q ss_pred CCHHHHHHHHHHHHHHcCCcc-------cccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHH
Q 048028 78 VTKTKKQERVEALINQLGLRS-------AAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMV 150 (592)
Q Consensus 78 ~~~~~~~~~v~~~l~~lgL~~-------~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i 150 (592)
.++ +++.++++..++.+ ..||.+|+ ....||||||||++|||||+++|++|+||||||+||+.+..++
T Consensus 580 ~~~----~~i~~al~~~~l~~~i~~lp~gl~t~i~e-~G~~LSGGQrQRiaLARall~~p~iliLDEptS~LD~~te~~i 654 (710)
T TIGR03796 580 IPD----ADLVRACKDAAIHDVITSRPGGYDAELAE-GGANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKII 654 (710)
T ss_pred CCH----HHHHHHHHHhCCHHHHHhCcCcccceecc-CCCCCCHHHHHHHHHHHHHhhCCCEEEEECccccCCHHHHHHH
Confidence 222 34555666655543 45788875 4578999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCEEEEEecCChhHHHhhhceEEEecCCeEeeecChhhHHH
Q 048028 151 VNVLQRIAKSGSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNETPSNLAQ 201 (592)
Q Consensus 151 ~~~l~~la~~g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~~~~~~ 201 (592)
.+.|++ .++|+|+++|+++ ....+|||++|++|+++..|+.+++.+
T Consensus 655 ~~~l~~---~~~T~IiitHrl~--~i~~~D~Iivl~~G~i~~~G~~~~Ll~ 700 (710)
T TIGR03796 655 DDNLRR---RGCTCIIVAHRLS--TIRDCDEIIVLERGKVVQRGTHEELWA 700 (710)
T ss_pred HHHHHh---cCCEEEEEecCHH--HHHhCCEEEEEeCCEEEEecCHHHHHH
Confidence 999986 4899999999986 456799999999999999999998854
No 261
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=4.2e-35 Score=264.93 Aligned_cols=187 Identities=28% Similarity=0.473 Sum_probs=162.3
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecC--c-------ccccceeEEEccCCCCCCCCCHHHHHHHHHH
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLE--S-------KLLKIISAYVMQDDLLFPMLTVEETLMFAAE 71 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~--~-------~~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~ 71 (592)
+.++||||||||||++.|.=+..| .+|+..|.|...+ . ...|+.+|+|+|+-.++|+|||.|||.-+-
T Consensus 31 lvllgpsgagkssllr~lnlle~p--~sg~l~ia~~~fd~s~~~~~k~i~~lr~~vgmvfqqy~lwphltv~enlieap- 107 (242)
T COG4161 31 LVLLGPSGAGKSSLLRVLNLLEMP--RSGTLNIAGNHFDFSKTPSDKAIRDLRRNVGMVFQQYNLWPHLTVQENLIEAP- 107 (242)
T ss_pred EEEECCCCCchHHHHHHHHHHhCC--CCCeEEecccccccccCccHHHHHHHHHhhhhhhhhhccCchhHHHHHHHhhh-
Confidence 368999999999999999876554 4699999776432 1 245677999999999999999999986542
Q ss_pred ccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHH
Q 048028 72 FRLPRSVTKTKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVV 151 (592)
Q Consensus 72 l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~ 151 (592)
+|. ..+++++.+.+..++++++.|.+.+|.. +-.|||||+|||+|||||+.+|++|++||||++|||+-..+++
T Consensus 108 ~kv-~gl~~~qa~~~a~ellkrlrl~~~adr~-----plhlsggqqqrvaiaralmmkpqvllfdeptaaldpeitaqvv 181 (242)
T COG4161 108 CRV-LGLSKDQALARAEKLLKRLRLKPYADRY-----PLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIV 181 (242)
T ss_pred HHH-hCCCHHHHHHHHHHHHHHhccccccccC-----ceecccchhhhHHHHHHHhcCCcEEeecCcccccCHHHHHHHH
Confidence 221 2578888899999999999999998754 4469999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCEEEEEecCChhHHHhhhceEEEecCCeEeeecChh
Q 048028 152 NVLQRIAKSGSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNETPS 197 (592)
Q Consensus 152 ~~l~~la~~g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~~ 197 (592)
+++++|+..|.|-+++||..+ -....+.||+.|.+|+++..|+.+
T Consensus 182 ~iikel~~tgitqvivthev~-va~k~as~vvyme~g~ive~g~a~ 226 (242)
T COG4161 182 SIIKELAETGITQVIVTHEVE-VARKTASRVVYMENGHIVEQGDAS 226 (242)
T ss_pred HHHHHHHhcCceEEEEEeehh-HHHhhhhheEeeecCeeEeecchh
Confidence 999999999999999999987 477889999999999999999875
No 262
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=9.7e-36 Score=277.63 Aligned_cols=191 Identities=25% Similarity=0.431 Sum_probs=168.5
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCc---ccccceeEEEccCCCCCCCCCHHHHHHHHHHccCCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLES---KLLKIISAYVMQDDLLFPMLTVEETLMFAAEFRLPRS 77 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~---~~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~~~~ 77 (592)
++|+|||||||||||.+++.+++. .+|+|.++|.++.. +...+.++.+-|+......+||+|-+.|+..-. .+.
T Consensus 30 Ts~IGPNGAGKSTLLS~~sRL~~~--d~G~i~i~g~~~~~~~s~~LAk~lSILkQ~N~i~~rlTV~dLv~FGRfPY-SqG 106 (252)
T COG4604 30 TSIIGPNGAGKSTLLSMMSRLLKK--DSGEITIDGLELTSTPSKELAKKLSILKQENHINSRLTVRDLVGFGRFPY-SQG 106 (252)
T ss_pred eEEECCCCccHHHHHHHHHHhccc--cCceEEEeeeecccCChHHHHHHHHHHHhhchhhheeEHHHHhhcCCCcc-cCC
Confidence 579999999999999999999875 45999999999864 345566788999999999999999999973211 123
Q ss_pred CCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 048028 78 VTKTKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVNVLQRI 157 (592)
Q Consensus 78 ~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~l 157 (592)
...++++..+++.++.++|++..|..+ .+||||||||.-||+.++.+.+.++||||.++||...+.++|+.|+++
T Consensus 107 Rlt~eD~~~I~~aieyl~L~~l~dryL-----d~LSGGQrQRAfIAMVlaQdTdyvlLDEPLNNLDmkHsv~iMk~Lrrl 181 (252)
T COG4604 107 RLTKEDRRIINEAIEYLHLEDLSDRYL-----DELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKHSVQIMKILRRL 181 (252)
T ss_pred CCchHHHHHHHHHHHHhcccchHHHhH-----HhcccchhhhhhhheeeeccCcEEEecCcccccchHHHHHHHHHHHHH
Confidence 445677889999999999999887665 469999999999999999999999999999999999999999999999
Q ss_pred HHc-CCEEEEEecCChhHHHhhhceEEEecCCeEeeecChhhHH
Q 048028 158 AKS-GSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNETPSNLA 200 (592)
Q Consensus 158 a~~-g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~~~~~ 200 (592)
+++ |+||+++.||.. .+..++|+++-|++|+++..|+++++.
T Consensus 182 a~el~KtiviVlHDIN-fAS~YsD~IVAlK~G~vv~~G~~~eii 224 (252)
T COG4604 182 ADELGKTIVVVLHDIN-FASCYSDHIVALKNGKVVKQGSPDEII 224 (252)
T ss_pred HHHhCCeEEEEEeccc-HHHhhhhheeeecCCEEEecCCHHHhc
Confidence 986 999999999998 477899999999999999999999874
No 263
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=100.00 E-value=2.5e-35 Score=331.49 Aligned_cols=187 Identities=30% Similarity=0.503 Sum_probs=157.5
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCc---ccccceeEEEccCCCCCCCCCHHHHHHHHHHccCCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLES---KLLKIISAYVMQDDLLFPMLTVEETLMFAAEFRLPRS 77 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~---~~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~~~~ 77 (592)
+||+||||||||||+|.|.|+.++ .+|+|.+||++++. ..+|+.++||+|++.+|. -||+||+.++.. .
T Consensus 358 vaiVG~sGsGKSTl~~LL~r~~~~--~~G~I~idg~dI~~i~~~~lr~~I~~V~Qd~~LF~-~TI~~NI~~g~~-----~ 429 (567)
T COG1132 358 VAIVGPSGSGKSTLIKLLLRLYDP--TSGEILIDGIDIRDISLDSLRKRIGIVSQDPLLFS-GTIRENIALGRP-----D 429 (567)
T ss_pred EEEECCCCCCHHHHHHHHhccCCC--CCCeEEECCEehhhcCHHHHHHhccEEcccceeec-ccHHHHHhcCCC-----C
Confidence 589999999999999999999885 46999999998764 467888999999999999 599999998632 1
Q ss_pred CCHHHHHHHH-----HHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHH
Q 048028 78 VTKTKKQERV-----EALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVN 152 (592)
Q Consensus 78 ~~~~~~~~~v-----~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~ 152 (592)
.++++..+.. ++.++ .+.+..||.|| +....||||||||++||||++++|++|+||||||+||+.+...+.+
T Consensus 430 at~eei~~a~k~a~~~d~I~--~lp~g~dt~vg-e~G~~LSgGQrQrlaiARall~~~~ILILDEaTSalD~~tE~~I~~ 506 (567)
T COG1132 430 ATDEEIEEALKLANAHEFIA--NLPDGYDTIVG-ERGVNLSGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQD 506 (567)
T ss_pred CCHHHHHHHHHHhChHHHHH--hCcccccceec-CCCccCCHHHHHHHHHHHHHhcCCCEEEEeccccccCHHhHHHHHH
Confidence 3443333322 23333 33556899998 5667799999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCEEEEEecCChhHHHhhhceEEEecCCeEeeecChhhHHH
Q 048028 153 VLQRIAKSGSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNETPSNLAQ 201 (592)
Q Consensus 153 ~l~~la~~g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~~~~~~ 201 (592)
.++++. +++|+++++|.++ .+. .+|+|++|++|++++.|+++++..
T Consensus 507 ~l~~l~-~~rT~iiIaHRls-ti~-~aD~IiVl~~G~i~e~G~h~eLl~ 552 (567)
T COG1132 507 ALKKLL-KGRTTLIIAHRLS-TIK-NADRIIVLDNGRIVERGTHEELLA 552 (567)
T ss_pred HHHHHh-cCCEEEEEeccHh-HHH-hCCEEEEEECCEEEEecCHHHHHH
Confidence 999887 5789999999997 354 499999999999999999999864
No 264
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=100.00 E-value=1.3e-34 Score=282.91 Aligned_cols=162 Identities=27% Similarity=0.389 Sum_probs=137.0
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCcc---c-ccceeEEEccCCCCCCCCCHHHHHHHHHHccCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLESK---L-LKIISAYVMQDDLLFPMLTVEETLMFAAEFRLPR 76 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~~---~-~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~~~ 76 (592)
++|+||||||||||+++|+|..+..+.+|+|.+||+++... . .++.++|++|++.+++.+|+++++.
T Consensus 29 ~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~l~--------- 99 (200)
T cd03217 29 HALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARLGIFLAFQYPPEIPGVKNADFLR--------- 99 (200)
T ss_pred EEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhCcEEEeecChhhccCccHHHHHh---------
Confidence 58999999999999999999952123569999999987542 1 2345899999999999989887760
Q ss_pred CCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHH
Q 048028 77 SVTKTKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVNVLQR 156 (592)
Q Consensus 77 ~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~ 156 (592)
. ..+.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++
T Consensus 100 -------------------------~-----~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~L~~ 149 (200)
T cd03217 100 -------------------------Y-----VNEGFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINK 149 (200)
T ss_pred -------------------------h-----ccccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHH
Confidence 0 0135999999999999999999999999999999999999999999999
Q ss_pred HHHcCCEEEEEecCChhHHHh-hhceEEEecCCeEeeecChhhHHHHH
Q 048028 157 IAKSGSIVIMSIHQPSYRILS-LLDRLIILSHGQSVYNETPSNLAQFF 203 (592)
Q Consensus 157 la~~g~tvi~~~H~~~~~i~~-~~D~v~ll~~G~~v~~g~~~~~~~~f 203 (592)
++++|+|+|+++|+++ .+.+ .+|++++|++|+++..|+.+ +.+.+
T Consensus 150 ~~~~~~tiii~sh~~~-~~~~~~~d~i~~l~~G~i~~~~~~~-~~~~~ 195 (200)
T cd03217 150 LREEGKSVLIITHYQR-LLDYIKPDRVHVLYDGRIVKSGDKE-LALEI 195 (200)
T ss_pred HHHCCCEEEEEecCHH-HHHHhhCCEEEEEECCEEEEEccHH-HHhhh
Confidence 9877899999999997 5666 79999999999999999544 55444
No 265
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=5.2e-35 Score=328.95 Aligned_cols=184 Identities=33% Similarity=0.571 Sum_probs=158.7
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCc---ccccceeEEEccCCCCCCCCCHHHHHHHHHHccCCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLES---KLLKIISAYVMQDDLLFPMLTVEETLMFAAEFRLPRS 77 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~---~~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~~~~ 77 (592)
+||+||||||||||+|+|+|..+|. +|+|.+||+++.+ ..+++.++||+|++.+|+. |++||+.++. + .
T Consensus 369 ~aivG~sGsGKSTL~~ll~g~~~p~--~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~-ti~~Ni~~~~----~-~ 440 (574)
T PRK11160 369 VALLGRTGCGKSTLLQLLTRAWDPQ--QGEILLNGQPIADYSEAALRQAISVVSQRVHLFSA-TLRDNLLLAA----P-N 440 (574)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCCC--CceEEECCEEhhhCCHHHHHhheeEEcccchhhcc-cHHHHhhcCC----C-c
Confidence 5899999999999999999998854 5999999998764 4567889999999999986 9999998752 1 1
Q ss_pred CCHHHHHHHHHHHHHHcCCccc------ccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHH
Q 048028 78 VTKTKKQERVEALINQLGLRSA------AKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVV 151 (592)
Q Consensus 78 ~~~~~~~~~v~~~l~~lgL~~~------~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~ 151 (592)
. .++++.++++..++++. .||.+|+ ....||||||||++|||+|+++|++|+||||||+||+.++..+.
T Consensus 441 ~----~~~~i~~al~~~~l~~~i~~p~GldT~vge-~g~~LSgGqrqRialARall~~~~ililDE~ts~lD~~t~~~i~ 515 (574)
T PRK11160 441 A----SDEALIEVLQQVGLEKLLEDDKGLNAWLGE-GGRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQIL 515 (574)
T ss_pred c----CHHHHHHHHHHcCCHHHHcCccccCchhcC-CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHH
Confidence 1 23557788888888653 5788875 46679999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCEEEEEecCChhHHHhhhceEEEecCCeEeeecChhhHH
Q 048028 152 NVLQRIAKSGSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNETPSNLA 200 (592)
Q Consensus 152 ~~l~~la~~g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~~~~~ 200 (592)
+.|+++. +++|+|+++|+++. ...+|++++|++|+++..|+.+++.
T Consensus 516 ~~l~~~~-~~~tviiitHr~~~--~~~~d~i~~l~~G~i~~~g~~~~l~ 561 (574)
T PRK11160 516 ELLAEHA-QNKTVLMITHRLTG--LEQFDRICVMDNGQIIEQGTHQELL 561 (574)
T ss_pred HHHHHHc-CCCEEEEEecChhH--HHhCCEEEEEeCCeEEEeCCHHHHH
Confidence 9999986 48999999999973 4679999999999999999998874
No 266
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=100.00 E-value=8.2e-35 Score=297.16 Aligned_cols=184 Identities=21% Similarity=0.367 Sum_probs=153.7
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCc---ccccceeEEEccCCCCCCCCCHHHHHHHHHHccCCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLES---KLLKIISAYVMQDDLLFPMLTVEETLMFAAEFRLPRS 77 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~---~~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~~~~ 77 (592)
++|+||||||||||+++|+|+.+ .+|+|.++|.++.. ...++.++|++|++.+|+. ||+||+.... .
T Consensus 33 ~~IvG~nGsGKSTLl~~L~gl~~---~~G~I~i~g~~i~~~~~~~lr~~i~~v~q~~~lf~~-tv~~nl~~~~------~ 102 (275)
T cd03289 33 VGLLGRTGSGKSTLLSAFLRLLN---TEGDIQIDGVSWNSVPLQKWRKAFGVIPQKVFIFSG-TFRKNLDPYG------K 102 (275)
T ss_pred EEEECCCCCCHHHHHHHHhhhcC---CCcEEEECCEEhhhCCHHHHhhhEEEECCCcccchh-hHHHHhhhcc------C
Confidence 58999999999999999999985 35999999998753 3456779999999999985 9999995321 1
Q ss_pred CCHHHHHHHHHHHHHHcCCcccccccccC------CCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHH
Q 048028 78 VTKTKKQERVEALINQLGLRSAAKTFIGD------ERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVV 151 (592)
Q Consensus 78 ~~~~~~~~~v~~~l~~lgL~~~~~~~vg~------~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~ 151 (592)
.+ .+++.+.++.+||.+..+..++. +....||||||||++|||||+.+|+||+|||||+|||+.+...+.
T Consensus 103 ~~----~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~p~illlDEpts~LD~~~~~~l~ 178 (275)
T cd03289 103 WS----DEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVIR 178 (275)
T ss_pred CC----HHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHH
Confidence 12 23567788889987655544321 234669999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCEEEEEecCChhHHHhhhceEEEecCCeEeeecChhhHHH
Q 048028 152 NVLQRIAKSGSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNETPSNLAQ 201 (592)
Q Consensus 152 ~~l~~la~~g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~~~~~~ 201 (592)
+.|+++. +++|||+++|+++ .+. .|||+++|++|++++.|+++++..
T Consensus 179 ~~l~~~~-~~~tii~isH~~~-~i~-~~dri~vl~~G~i~~~g~~~~l~~ 225 (275)
T cd03289 179 KTLKQAF-ADCTVILSEHRIE-AML-ECQRFLVIEENKVRQYDSIQKLLN 225 (275)
T ss_pred HHHHHhc-CCCEEEEEECCHH-HHH-hCCEEEEecCCeEeecCCHHHHhh
Confidence 9999875 4899999999996 454 599999999999999999998753
No 267
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=2.2e-34 Score=289.93 Aligned_cols=174 Identities=27% Similarity=0.344 Sum_probs=144.7
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCcccccceeEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCH
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLESKLLKIISAYVMQDDLLFPMLTVEETLMFAAEFRLPRSVTK 80 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~ 80 (592)
++|+|||||||||||++|+|..+|. +|+|.++|. .++|++|+....+.+||+|++.+...... .
T Consensus 28 ~~i~G~NGsGKSTLlk~L~G~~~p~--~G~i~~~g~---------~i~~~~q~~~~~~~~tv~e~l~~~~~~~~----~- 91 (246)
T cd03237 28 IGILGPNGIGKTTFIKMLAGVLKPD--EGDIEIELD---------TVSYKPQYIKADYEGTVRDLLSSITKDFY----T- 91 (246)
T ss_pred EEEECCCCCCHHHHHHHHhCCCcCC--CCeEEECCc---------eEEEecccccCCCCCCHHHHHHHHhhhcc----c-
Confidence 4899999999999999999998754 599999984 47999999887788999999976432110 1
Q ss_pred HHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc
Q 048028 81 TKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVNVLQRIAKS 160 (592)
Q Consensus 81 ~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~la~~ 160 (592)
.....+++++.++|.+..++.++ .|||||||||+||++|+.+|++++|||||++||+.++..+.+.|++++++
T Consensus 92 --~~~~~~~~l~~l~l~~~~~~~~~-----~LSgGe~qrv~iaraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~ 164 (246)
T cd03237 92 --HPYFKTEIAKPLQIEQILDREVP-----ELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAEN 164 (246)
T ss_pred --cHHHHHHHHHHcCCHHHhhCChh-----hCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh
Confidence 12346789999999877766554 59999999999999999999999999999999999999999999999864
Q ss_pred -CCEEEEEecCChhHHHhhhceEEEecCCeEe--eecChhh
Q 048028 161 -GSIVIMSIHQPSYRILSLLDRLIILSHGQSV--YNETPSN 198 (592)
Q Consensus 161 -g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v--~~g~~~~ 198 (592)
|+|||+++|++. .+..+||++++|+++..+ ..+++.+
T Consensus 165 ~~~tiiivsHd~~-~~~~~~d~i~~l~~~~~~~~~~~~~~~ 204 (246)
T cd03237 165 NEKTAFVVEHDII-MIDYLADRLIVFEGEPSVNGVANPPQS 204 (246)
T ss_pred cCCEEEEEeCCHH-HHHHhCCEEEEEcCCCeeEEEeCCchH
Confidence 899999999987 588899999999764333 3344544
No 268
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=100.00 E-value=1.9e-34 Score=286.67 Aligned_cols=175 Identities=27% Similarity=0.368 Sum_probs=144.9
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEEC--CE--ecCc---cc----ccceeEEEccCCCCCCCCCHHHHHHHH
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLN--GE--VLES---KL----LKIISAYVMQDDLLFPMLTVEETLMFA 69 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~--g~--~~~~---~~----~~~~~~yv~Q~~~l~~~lTV~E~l~f~ 69 (592)
++|+||||||||||+++|+|.+++. +|+|.++ |. ++.. .. .++.++|++|++.+++.+||+|++.+.
T Consensus 37 ~~l~G~nGsGKSTLl~~i~G~~~~~--~G~i~~~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~ 114 (224)
T TIGR02324 37 VALSGPSGAGKSTLLKSLYANYLPD--SGRILVRHEGAWVDLAQASPREVLEVRRKTIGYVSQFLRVIPRVSALEVVAEP 114 (224)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCCC--CCeEEEecCCCccchhhcCHHHHHHHHhcceEEEecccccCCCccHHHHHHHH
Confidence 4899999999999999999998754 5999998 43 3321 11 134689999999999999999999886
Q ss_pred HHccCCCCCCHHHHHHHHHHHHHHcCCccc-ccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHH
Q 048028 70 AEFRLPRSVTKTKKQERVEALINQLGLRSA-AKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAF 148 (592)
Q Consensus 70 ~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~ 148 (592)
.... .....+..+++.++++.+|+.+. .+.. +++||||||||++||++|+.+|++++|||||+|||+.++.
T Consensus 115 ~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~ 186 (224)
T TIGR02324 115 LLER---GVPREAARARARELLARLNIPERLWHLP-----PATFSGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQ 186 (224)
T ss_pred HHHc---CCCHHHHHHHHHHHHHHcCCchhhhhCC-----cccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHH
Confidence 5432 12334445678899999999753 3443 4569999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCEEEEEecCChhHHHhhhceEEEec
Q 048028 149 MVVNVLQRIAKSGSIVIMSIHQPSYRILSLLDRLIILS 186 (592)
Q Consensus 149 ~i~~~l~~la~~g~tvi~~~H~~~~~i~~~~D~v~ll~ 186 (592)
.+.+.|++++++|+|||+++|++. .+..++|+++.+.
T Consensus 187 ~l~~~l~~~~~~g~tii~vsH~~~-~~~~~~d~i~~~~ 223 (224)
T TIGR02324 187 VVVELIAEAKARGAALIGIFHDEE-VRELVADRVMDVT 223 (224)
T ss_pred HHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcceeEecC
Confidence 999999999878999999999976 5778999998764
No 269
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=1.3e-34 Score=284.47 Aligned_cols=170 Identities=27% Similarity=0.433 Sum_probs=144.1
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCcccccceeEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCH
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLESKLLKIISAYVMQDDLLFPMLTVEETLMFAAEFRLPRSVTK 80 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~ 80 (592)
++|+||||||||||+++|+|..++ .+|+|.++|.++.....++.++|++|++.+++.+||+||+.+....+. .
T Consensus 31 ~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~tv~~~l~~~~~~~~---~-- 103 (207)
T PRK13539 31 LVLTGPNGSGKTTLLRLIAGLLPP--AAGTIKLDGGDIDDPDVAEACHYLGHRNAMKPALTVAENLEFWAAFLG---G-- 103 (207)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEeCcchhhHhhcEEecCCCcCCCCCcHHHHHHHHHHhcC---C--
Confidence 489999999999999999999875 459999999876432256678999999988999999999987654321 1
Q ss_pred HHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc
Q 048028 81 TKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVNVLQRIAKS 160 (592)
Q Consensus 81 ~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~la~~ 160 (592)
..++++++++.+||.+..++.+ +.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++
T Consensus 104 --~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~ 176 (207)
T PRK13539 104 --EELDIAAALEAVGLAPLAHLPF-----GYLSAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLAQ 176 (207)
T ss_pred --cHHHHHHHHHHcCCHHHHcCCh-----hhcCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHC
Confidence 1245889999999987666554 469999999999999999999999999999999999999999999999888
Q ss_pred CCEEEEEecCChhHHHhhhceEEEecC
Q 048028 161 GSIVIMSIHQPSYRILSLLDRLIILSH 187 (592)
Q Consensus 161 g~tvi~~~H~~~~~i~~~~D~v~ll~~ 187 (592)
|+|||+++|++. ++.. |+++.+..
T Consensus 177 ~~tiii~sH~~~-~~~~--~~~~~~~~ 200 (207)
T PRK13539 177 GGIVIAATHIPL-GLPG--ARELDLGP 200 (207)
T ss_pred CCEEEEEeCCch-hhcc--CcEEeecC
Confidence 999999999987 4554 99888744
No 270
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=100.00 E-value=2e-34 Score=291.19 Aligned_cols=172 Identities=27% Similarity=0.477 Sum_probs=146.5
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCcccccceeEEEccCCCCCCCC--CHHHHHHHHHHccCCCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLESKLLKIISAYVMQDDLLFPML--TVEETLMFAAEFRLPRSV 78 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~~~~~~~~~yv~Q~~~l~~~l--TV~E~l~f~~~l~~~~~~ 78 (592)
++|+||||||||||+++|+|+.++. +|+|.++|. ..++|++|++.+++.+ |+.|++.+. + ..
T Consensus 33 ~~I~G~NGsGKSTLl~~i~Gl~~p~--~G~i~~~~~--------~~i~~v~q~~~~~~~l~~~~~~~~~~~-----~-~~ 96 (251)
T PRK09544 33 LTLLGPNGAGKSTLVRVVLGLVAPD--EGVIKRNGK--------LRIGYVPQKLYLDTTLPLTVNRFLRLR-----P-GT 96 (251)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCCC--ceEEEECCc--------cCEEEeccccccccccChhHHHHHhcc-----c-cc
Confidence 5899999999999999999998754 599999872 3489999998887764 777776431 1 11
Q ss_pred CHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 048028 79 TKTKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVNVLQRIA 158 (592)
Q Consensus 79 ~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~la 158 (592)
..+++.++++.+||.+..++.+ +.|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|++++
T Consensus 97 ----~~~~~~~~l~~~gl~~~~~~~~-----~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~ 167 (251)
T PRK09544 97 ----KKEDILPALKRVQAGHLIDAPM-----QKLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLR 167 (251)
T ss_pred ----cHHHHHHHHHHcCChHHHhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHH
Confidence 1345788999999988776654 4699999999999999999999999999999999999999999999998
Q ss_pred Hc-CCEEEEEecCChhHHHhhhceEEEecCCeEeeecChhhH
Q 048028 159 KS-GSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNETPSNL 199 (592)
Q Consensus 159 ~~-g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~~~~ 199 (592)
++ |+|||+++|+++ ++.+.+|++++|+ |+++..|+++++
T Consensus 168 ~~~g~tiiivsH~~~-~i~~~~d~i~~l~-~~i~~~g~~~~~ 207 (251)
T PRK09544 168 RELDCAVLMVSHDLH-LVMAKTDEVLCLN-HHICCSGTPEVV 207 (251)
T ss_pred HhcCCEEEEEecCHH-HHHHhCCEEEEEC-CceEeeCCHHHH
Confidence 76 899999999997 6889999999996 478899988765
No 271
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=100.00 E-value=4e-34 Score=308.95 Aligned_cols=182 Identities=21% Similarity=0.299 Sum_probs=154.3
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCcccccceeEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCH
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLESKLLKIISAYVMQDDLLFPMLTVEETLMFAAEFRLPRSVTK 80 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~ 80 (592)
++|+|||||||||||++|+|+.+|. +|+|.++|.+. ++.+...+.+.+||+||+.+..... ..+.
T Consensus 53 vgIiGpNGSGKSTLLkiLaGLl~P~--sGeI~I~G~~~----------~i~~~~~l~~~lTV~EnL~l~~~~~---~~~~ 117 (549)
T PRK13545 53 VGIIGLNGSGKSTLSNLIAGVTMPN--KGTVDIKGSAA----------LIAISSGLNGQLTGIENIELKGLMM---GLTK 117 (549)
T ss_pred EEEEcCCCCCHHHHHHHHhCCCCCC--ceEEEECCEee----------eEEeccccCCCCcHHHHHHhhhhhc---CCCH
Confidence 4899999999999999999998754 59999999752 1223345677789999998765432 2334
Q ss_pred HHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc
Q 048028 81 TKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVNVLQRIAKS 160 (592)
Q Consensus 81 ~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~la~~ 160 (592)
.+..++++++++.++|.+..++.+ +.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++
T Consensus 118 ~e~~e~i~elLe~lgL~~~ld~~~-----~~LSGGQrQRVaLArAL~~~P~LLLLDEPTsgLD~~sr~~LlelL~el~~~ 192 (549)
T PRK13545 118 EKIKEIIPEIIEFADIGKFIYQPV-----KTYSSGMKSRLGFAISVHINPDILVIDEALSVGDQTFTKKCLDKMNEFKEQ 192 (549)
T ss_pred HHHHHHHHHHHHHcCChhHhhCCc-----ccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHhC
Confidence 455567889999999988776655 469999999999999999999999999999999999999999999999878
Q ss_pred CCEEEEEecCChhHHHhhhceEEEecCCeEeeecChhhHHHHH
Q 048028 161 GSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNETPSNLAQFF 203 (592)
Q Consensus 161 g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~~~~~~~f 203 (592)
|+|||+++|+++ ++.++||++++|++|+++..|+++++.+-+
T Consensus 193 G~TIIIVSHdl~-~i~~l~DrIivL~~GkIv~~G~~~el~~~~ 234 (549)
T PRK13545 193 GKTIFFISHSLS-QVKSFCTKALWLHYGQVKEYGDIKEVVDHY 234 (549)
T ss_pred CCEEEEEECCHH-HHHHhCCEEEEEECCEEEEECCHHHHHhhH
Confidence 999999999997 688999999999999999999998875433
No 272
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=100.00 E-value=1.8e-34 Score=281.48 Aligned_cols=167 Identities=28% Similarity=0.362 Sum_probs=141.7
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCcc--cccceeEEEccCCCCCCCCCHHHHHHHHHHccCCCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLESK--LLKIISAYVMQDDLLFPMLTVEETLMFAAEFRLPRSV 78 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~~--~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~~~~~ 78 (592)
++|+||||||||||+++|+|..++ .+|+|.++|+++... ..++.++|++|++.+++.+||.||+.+....+.
T Consensus 29 ~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~---- 102 (198)
T TIGR01189 29 LQVTGPNGIGKTTLLRILAGLLRP--DSGEVRWNGTALAEQRDEPHRNILYLGHLPGLKPELSALENLHFWAAIHG---- 102 (198)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCC--CccEEEECCEEcccchHHhhhheEEeccCcccccCCcHHHHHHHHHHHcC----
Confidence 489999999999999999999875 459999999986432 234668999999999999999999987654321
Q ss_pred CHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 048028 79 TKTKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVNVLQRIA 158 (592)
Q Consensus 79 ~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~la 158 (592)
. .+++++++++.+|+++..++.++ .||||||||++||++++.+|++++|||||+|||+.++..+.+.|++++
T Consensus 103 -~--~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~ 174 (198)
T TIGR01189 103 -G--AQRTIEDALAAVGLTGFEDLPAA-----QLSAGQQRRLALARLWLSRAPLWILDEPTTALDKAGVALLAGLLRAHL 174 (198)
T ss_pred -C--cHHHHHHHHHHcCCHHHhcCChh-----hcCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHH
Confidence 1 13467889999999887766654 599999999999999999999999999999999999999999999998
Q ss_pred HcCCEEEEEecCChhHHHhhhceEEE
Q 048028 159 KSGSIVIMSIHQPSYRILSLLDRLII 184 (592)
Q Consensus 159 ~~g~tvi~~~H~~~~~i~~~~D~v~l 184 (592)
++|.|+|+++|++.. -.+|+++.
T Consensus 175 ~~~~tii~~sH~~~~---~~~~~~~~ 197 (198)
T TIGR01189 175 ARGGIVLLTTHQDLG---LVEARELR 197 (198)
T ss_pred hCCCEEEEEEccccc---ccceEEee
Confidence 889999999999863 34677764
No 273
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=100.00 E-value=5.6e-35 Score=336.62 Aligned_cols=185 Identities=27% Similarity=0.476 Sum_probs=156.2
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCc---ccccceeEEEccCCCCCCCCCHHHHHHHHHHccCCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLES---KLLKIISAYVMQDDLLFPMLTVEETLMFAAEFRLPRS 77 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~---~~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~~~~ 77 (592)
+||+||||||||||+|+|+|+.+|. +|+|.+||.++.+ ..+|+.++||+|++.+|+. |++|||.++.. + .
T Consensus 503 vaIvG~SGsGKSTLlklL~gl~~p~--~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~g-TI~eNi~l~~~---~-~ 575 (708)
T TIGR01193 503 TTIVGMSGSGKSTLAKLLVGFFQAR--SGEILLNGFSLKDIDRHTLRQFINYLPQEPYIFSG-SILENLLLGAK---E-N 575 (708)
T ss_pred EEEECCCCCCHHHHHHHHhccCCCC--CcEEEECCEEHHHcCHHHHHHheEEEecCceehhH-HHHHHHhccCC---C-C
Confidence 5899999999999999999998864 5999999998753 4577889999999999987 99999987521 1 1
Q ss_pred CCHHHHHHHHHHHHHHcCCc-------ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHH
Q 048028 78 VTKTKKQERVEALINQLGLR-------SAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMV 150 (592)
Q Consensus 78 ~~~~~~~~~v~~~l~~lgL~-------~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i 150 (592)
.++ +++.++++..++. +..||.+|+ ....||||||||++|||||+++|++|+||||||+||+.+.+.+
T Consensus 576 ~~~----~~i~~a~~~a~l~~~i~~lp~gldt~i~e-~G~~LSgGQrQRialARall~~p~iliLDE~Ts~LD~~te~~i 650 (708)
T TIGR01193 576 VSQ----DEIWAACEIAEIKDDIENMPLGYQTELSE-EGSSISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKI 650 (708)
T ss_pred CCH----HHHHHHHHHhCCHHHHHhcccccCcEecC-CCCCCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHH
Confidence 222 3345555555543 345788875 4578999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCEEEEEecCChhHHHhhhceEEEecCCeEeeecChhhHHH
Q 048028 151 VNVLQRIAKSGSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNETPSNLAQ 201 (592)
Q Consensus 151 ~~~l~~la~~g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~~~~~~ 201 (592)
.+.|+++ +++|+|+++|+++ ..+.+|+|++|++|+++..|+.+++.+
T Consensus 651 ~~~L~~~--~~~T~IiitHr~~--~~~~~D~i~~l~~G~i~~~G~~~~L~~ 697 (708)
T TIGR01193 651 VNNLLNL--QDKTIIFVAHRLS--VAKQSDKIIVLDHGKIIEQGSHDELLD 697 (708)
T ss_pred HHHHHHh--cCCEEEEEecchH--HHHcCCEEEEEECCEEEEECCHHHHHh
Confidence 9999985 4799999999996 467899999999999999999988753
No 274
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.9e-35 Score=310.85 Aligned_cols=184 Identities=30% Similarity=0.504 Sum_probs=157.0
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCc---ccccceeEEEccCCCCCCCCCHHHHHHHHHHccCCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLES---KLLKIISAYVMQDDLLFPMLTVEETLMFAAEFRLPRS 77 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~---~~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~~~~ 77 (592)
+||+|+|||||||+||+|.+... .+|+|++||+++.+ ...|+.+||||||..||.+ ||.+|+.++.. .
T Consensus 381 VaIvG~nGsGKSTilr~LlrF~d---~sG~I~IdG~dik~~~~~SlR~~Ig~VPQd~~LFnd-TIl~NI~YGn~-----s 451 (591)
T KOG0057|consen 381 VAIVGSNGSGKSTILRLLLRFFD---YSGSILIDGQDIKEVSLESLRQSIGVVPQDSVLFND-TILYNIKYGNP-----S 451 (591)
T ss_pred EEEECCCCCCHHHHHHHHHHHhc---cCCcEEECCeeHhhhChHHhhhheeEeCCcccccch-hHHHHhhcCCC-----C
Confidence 68999999999999999999976 46999999998854 5678899999999999987 99999998732 2
Q ss_pred CCHHHHHHHHHHHHHHcCCc-------ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHH
Q 048028 78 VTKTKKQERVEALINQLGLR-------SAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMV 150 (592)
Q Consensus 78 ~~~~~~~~~v~~~l~~lgL~-------~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i 150 (592)
.+. ++|-++.+..|+. +-..|.||+ ....|||||||||+||||+++||+|+++|||||.||+.+..++
T Consensus 452 as~----eeV~e~~k~a~~hd~i~~l~~GY~T~VGe-rG~~LSGGekQrvslaRa~lKda~Il~~DEaTS~LD~~TE~~i 526 (591)
T KOG0057|consen 452 ASD----EEVVEACKRAGLHDVISRLPDGYQTLVGE-RGLMLSGGEKQRVSLARAFLKDAPILLLDEATSALDSETEREI 526 (591)
T ss_pred cCH----HHHHHHHHHcCcHHHHHhccccchhhHhh-cccccccchHHHHHHHHHHhcCCCeEEecCcccccchhhHHHH
Confidence 233 3344455555443 456777886 4556999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCEEEEEecCChhHHHhhhceEEEecCCeEeeecChhhHHH
Q 048028 151 VNVLQRIAKSGSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNETPSNLAQ 201 (592)
Q Consensus 151 ~~~l~~la~~g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~~~~~~ 201 (592)
++.+.+. ..|+|+|++.|+.+ ...-||+|++|++|++...|+.+|+..
T Consensus 527 ~~~i~~~-~~~rTvI~IvH~l~--ll~~~DkI~~l~nG~v~e~gth~ell~ 574 (591)
T KOG0057|consen 527 LDMIMDV-MSGRTVIMIVHRLD--LLKDFDKIIVLDNGTVKEYGTHSELLA 574 (591)
T ss_pred HHHHHHh-cCCCeEEEEEecch--hHhcCCEEEEEECCeeEEeccHHHHhh
Confidence 9999993 35899999999975 678999999999999999999999865
No 275
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=100.00 E-value=3.2e-35 Score=292.53 Aligned_cols=176 Identities=27% Similarity=0.441 Sum_probs=142.7
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCc---ccccceeEEEccCCCCCCCCCHHHHHHHHHHccCCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLES---KLLKIISAYVMQDDLLFPMLTVEETLMFAAEFRLPRS 77 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~---~~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~~~~ 77 (592)
++|+||||||||||+++|+|+.++. +|+|.++|+++.. ...++.++|++|++.+++ .||+||+.+..... .
T Consensus 43 ~~i~G~nGsGKSTLl~~l~Gl~~~~--~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~-~tv~~nl~~~~~~~---~ 116 (226)
T cd03248 43 TALVGPSGSGKSTVVALLENFYQPQ--GGQVLLDGKPISQYEHKYLHSKVSLVGQEPVLFA-RSLQDNIAYGLQSC---S 116 (226)
T ss_pred EEEECCCCCCHHHHHHHHhcCcCCC--CcEEEECCCchHHcCHHHHHhhEEEEecccHHHh-hhHHHHhccccCCC---C
Confidence 4899999999999999999998754 5999999987643 234566899999998886 59999998753211 1
Q ss_pred CCH---HHHHHHHHHHHHHc--CCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHH
Q 048028 78 VTK---TKKQERVEALINQL--GLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVN 152 (592)
Q Consensus 78 ~~~---~~~~~~v~~~l~~l--gL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~ 152 (592)
... ...+..++++++.+ |+++..+.. ++.|||||||||+||++|+.+|++++|||||+|||+.++..+.+
T Consensus 117 ~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~-----~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~ 191 (226)
T cd03248 117 FECVKEAAQKAHAHSFISELASGYDTEVGEK-----GSQLSGGQKQRVAIARALIRNPQVLILDEATSALDAESEQQVQQ 191 (226)
T ss_pred HHHHHHHHHHcCcHHHHHhccccccchhhcC-----CCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHH
Confidence 111 11122356788888 776655444 45799999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCEEEEEecCChhHHHhhhceEEEecCCeE
Q 048028 153 VLQRIAKSGSIVIMSIHQPSYRILSLLDRLIILSHGQS 190 (592)
Q Consensus 153 ~l~~la~~g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~ 190 (592)
.|+++++ ++|+|+++|+++ ++. .+|++++|++|++
T Consensus 192 ~l~~~~~-~~tii~~sh~~~-~~~-~~d~i~~l~~g~i 226 (226)
T cd03248 192 ALYDWPE-RRTVLVIAHRLS-TVE-RADQILVLDGGRI 226 (226)
T ss_pred HHHHHcC-CCEEEEEECCHH-HHH-hCCEEEEecCCcC
Confidence 9999875 689999999997 464 5999999999874
No 276
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.3e-35 Score=320.45 Aligned_cols=186 Identities=26% Similarity=0.498 Sum_probs=160.2
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCc---ccccceeEEEccCCCCCCCCCHHHHHHHHHHccCCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLES---KLLKIISAYVMQDDLLFPMLTVEETLMFAAEFRLPRS 77 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~---~~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~~~~ 77 (592)
+||+||||+||||+.+.|-.++.|. +|+|.+||+|+.+ ..+|+.+|+|.|||.||.. ||+||+.|+.. +
T Consensus 497 vALVGPSGsGKSTiasLL~rfY~Pt--sG~IllDG~~i~~~~~~~lr~~Ig~V~QEPvLFs~-sI~eNI~YG~~-----~ 568 (716)
T KOG0058|consen 497 VALVGPSGSGKSTIASLLLRFYDPT--SGRILLDGVPISDINHKYLRRKIGLVGQEPVLFSG-SIRENIAYGLD-----N 568 (716)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCC--CCeEEECCeehhhcCHHHHHHHeeeeeccceeecc-cHHHHHhcCCC-----C
Confidence 6899999999999999999998864 5999999999864 4578899999999999997 99999999754 2
Q ss_pred CCHHHHHH-----HHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHH
Q 048028 78 VTKTKKQE-----RVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVN 152 (592)
Q Consensus 78 ~~~~~~~~-----~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~ 152 (592)
.++++.++ .+++.+ .++++..||.||+ +..+||||||||++|||||++||+||||||.||+||+++...+.+
T Consensus 569 ~t~e~i~~AAk~ANah~FI--~~~p~gY~T~VGE-kG~qLSGGQKQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~ 645 (716)
T KOG0058|consen 569 ATDEEIEAAAKMANAHEFI--TNFPDGYNTVVGE-KGSQLSGGQKQRIAIARALLRNPRVLILDEATSALDAESEYLVQE 645 (716)
T ss_pred CCHHHHHHHHHHhChHHHH--HhCccccccccCC-ccccccchHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHH
Confidence 34443322 223333 3667889999986 445799999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCEEEEEecCChhHHHhhhceEEEecCCeEeeecChhhHH
Q 048028 153 VLQRIAKSGSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNETPSNLA 200 (592)
Q Consensus 153 ~l~~la~~g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~~~~~ 200 (592)
.|.++.+ ++|||++.|..+ ..+.+|+|+++++|++++.|+.+|+.
T Consensus 646 aL~~~~~-~rTVlvIAHRLS--TV~~Ad~Ivvi~~G~V~E~G~h~eLl 690 (716)
T KOG0058|consen 646 ALDRLMQ-GRTVLVIAHRLS--TVRHADQIVVIDKGRVVEMGTHDELL 690 (716)
T ss_pred HHHHhhc-CCeEEEEehhhh--HhhhccEEEEEcCCeEEecccHHHHh
Confidence 9999876 599999999987 56889999999999999999988874
No 277
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=100.00 E-value=7.7e-35 Score=334.81 Aligned_cols=185 Identities=31% Similarity=0.531 Sum_probs=157.4
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCc---ccccceeEEEccCCCCCCCCCHHHHHHHHHHccCCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLES---KLLKIISAYVMQDDLLFPMLTVEETLMFAAEFRLPRS 77 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~---~~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~~~~ 77 (592)
+||+||||||||||+|+|+|+.+|. +|+|.+||.++.. ..+|+.++||+|++.+|+. |++|||.++. + .
T Consensus 494 iaIvG~sGsGKSTLlklL~gl~~p~--~G~I~idg~~l~~~~~~~lr~~i~~v~Q~~~lf~~-TI~eNi~~~~----~-~ 565 (694)
T TIGR03375 494 VAIIGRIGSGKSTLLKLLLGLYQPT--EGSVLLDGVDIRQIDPADLRRNIGYVPQDPRLFYG-TLRDNIALGA----P-Y 565 (694)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCCC--CceEEECCEEhhhCCHHHHHhccEEECCChhhhhh-hHHHHHhCCC----C-C
Confidence 5899999999999999999998864 5999999998764 4568889999999999986 9999997642 1 1
Q ss_pred CCHHHHHHHHHHHHHHcCCc-------ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHH
Q 048028 78 VTKTKKQERVEALINQLGLR-------SAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMV 150 (592)
Q Consensus 78 ~~~~~~~~~v~~~l~~lgL~-------~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i 150 (592)
.++ +++.++++..++. +-.||.+|+ ....||||||||++|||||+++|++++||||||+||+.+..++
T Consensus 566 ~~~----~~i~~a~~~~~l~~~i~~lp~gl~T~i~e-~G~~LSgGQrQRlalARall~~p~iliLDE~Ts~LD~~te~~i 640 (694)
T TIGR03375 566 ADD----EEILRAAELAGVTEFVRRHPDGLDMQIGE-RGRSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERF 640 (694)
T ss_pred CCH----HHHHHHHHHcChHHHHHhCcccccceecC-CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHH
Confidence 222 3455555555543 356888875 4567999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCEEEEEecCChhHHHhhhceEEEecCCeEeeecChhhHHH
Q 048028 151 VNVLQRIAKSGSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNETPSNLAQ 201 (592)
Q Consensus 151 ~~~l~~la~~g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~~~~~~ 201 (592)
.+.|+++.+ ++|+|+++|+++ ..+.||+|++|++|++++.|+.+++.+
T Consensus 641 ~~~l~~~~~-~~T~iiItHrl~--~~~~~D~iivl~~G~i~e~G~~~eLl~ 688 (694)
T TIGR03375 641 KDRLKRWLA-GKTLVLVTHRTS--LLDLVDRIIVMDNGRIVADGPKDQVLE 688 (694)
T ss_pred HHHHHHHhC-CCEEEEEecCHH--HHHhCCEEEEEeCCEEEeeCCHHHHHH
Confidence 999999864 799999999996 467899999999999999999998754
No 278
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.3e-34 Score=307.79 Aligned_cols=187 Identities=28% Similarity=0.437 Sum_probs=167.1
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCcc----cccceeEEEccCCCCCCCCCHHHHHHHHHHccC-C
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLESK----LLKIISAYVMQDDLLFPMLTVEETLMFAAEFRL-P 75 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~~----~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~-~ 75 (592)
+||+|.||||||||+|+|+|.++| ++|+|.+||++.... .....++.|+|+..+.|+|||.||+.++...+. .
T Consensus 37 ~aL~GeNGAGKSTLmKiLsGv~~p--~~G~I~~~G~~~~~~sp~~A~~~GI~~V~QEl~L~p~LsVaeNifLgre~~~~~ 114 (500)
T COG1129 37 HALLGENGAGKSTLMKILSGVYPP--DSGEILIDGKPVAFSSPRDALAAGIATVHQELSLVPNLSVAENIFLGREPTRRF 114 (500)
T ss_pred EEEecCCCCCHHHHHHHHhCcccC--CCceEEECCEEccCCCHHHHHhCCcEEEeechhccCCccHHHHhhcccccccCC
Confidence 489999999999999999999885 459999999987632 234458899999999999999999988765443 2
Q ss_pred CCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHH
Q 048028 76 RSVTKTKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVNVLQ 155 (592)
Q Consensus 76 ~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~ 155 (592)
.-++.++.++++.++|+.+|+....+++|++ ||+||||.|.||+||..+++||+||||||.|+......+.+.++
T Consensus 115 g~id~~~m~~~A~~~l~~lg~~~~~~~~v~~-----LsiaqrQ~VeIArAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir 189 (500)
T COG1129 115 GLIDRKAMRRRARELLARLGLDIDPDTLVGD-----LSIAQRQMVEIARALSFDARVLILDEPTAALTVKETERLFDLIR 189 (500)
T ss_pred CccCHHHHHHHHHHHHHHcCCCCChhhhhhh-----CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHH
Confidence 3457778889999999999996557777775 99999999999999999999999999999999999999999999
Q ss_pred HHHHcCCEEEEEecCChhHHHhhhceEEEecCCeEeeecC
Q 048028 156 RIAKSGSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNET 195 (592)
Q Consensus 156 ~la~~g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~ 195 (592)
+|+++|.++|+++|.++ |++++|||+.+|.+|+.+..++
T Consensus 190 ~Lk~~Gv~ii~ISHrl~-Ei~~i~DritVlRDG~~v~~~~ 228 (500)
T COG1129 190 RLKAQGVAIIYISHRLD-EVFEIADRITVLRDGRVVGTRP 228 (500)
T ss_pred HHHhCCCEEEEEcCcHH-HHHHhcCEEEEEeCCEEeeecc
Confidence 99999999999999997 8999999999999999998877
No 279
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.7e-34 Score=277.00 Aligned_cols=144 Identities=37% Similarity=0.588 Sum_probs=130.0
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCc-----ccccceeEEEccCCCCCCCCCHHHHHHHHHHccCC
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLES-----KLLKIISAYVMQDDLLFPMLTVEETLMFAAEFRLP 75 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~-----~~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~~ 75 (592)
++|+||||||||||+++|+|..++ .+|+|.++|+++.. ...++.++|++|++.+++.+|++||+.+.
T Consensus 29 ~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~------ 100 (178)
T cd03229 29 VALLGPSGSGKSTLLRCIAGLEEP--DSGSILIDGEDLTDLEDELPPLRRRIGMVFQDFALFPHLTVLENIALG------ 100 (178)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEEccccchhHHHHhhcEEEEecCCccCCCCCHHHheeec------
Confidence 489999999999999999999875 46999999988753 23456789999999999999999987531
Q ss_pred CCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHH
Q 048028 76 RSVTKTKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVNVLQ 155 (592)
Q Consensus 76 ~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~ 155 (592)
||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+
T Consensus 101 ------------------------------------lS~G~~qr~~la~al~~~p~llilDEP~~~LD~~~~~~l~~~l~ 144 (178)
T cd03229 101 ------------------------------------LSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLK 144 (178)
T ss_pred ------------------------------------CCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999
Q ss_pred HHHHc-CCEEEEEecCChhHHHhhhceEEEecCCe
Q 048028 156 RIAKS-GSIVIMSIHQPSYRILSLLDRLIILSHGQ 189 (592)
Q Consensus 156 ~la~~-g~tvi~~~H~~~~~i~~~~D~v~ll~~G~ 189 (592)
+++++ |+|+|+++|++. ++.+.+|++++|++|+
T Consensus 145 ~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~g~ 178 (178)
T cd03229 145 SLQAQLGITVVLVTHDLD-EAARLADRVVVLRDGK 178 (178)
T ss_pred HHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEeCCC
Confidence 99887 899999999987 5778999999999885
No 280
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=1.7e-34 Score=286.25 Aligned_cols=178 Identities=22% Similarity=0.391 Sum_probs=145.8
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCc---ccccceeEEEccCCCCCCCCCHHHHHHHHHHccCCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLES---KLLKIISAYVMQDDLLFPMLTVEETLMFAAEFRLPRS 77 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~---~~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~~~~ 77 (592)
++|+||||||||||+++|+|..++ .+|+|.++|.++.. ...++.++|++|++.+++ .||+||+.+.. .
T Consensus 33 ~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~-~tv~enl~~~~------~ 103 (221)
T cd03244 33 VGIVGRTGSGKSSLLLALFRLVEL--SSGSILIDGVDISKIGLHDLRSRISIIPQDPVLFS-GTIRSNLDPFG------E 103 (221)
T ss_pred EEEECCCCCCHHHHHHHHHcCCCC--CCCEEEECCEEhHhCCHHHHhhhEEEECCCCcccc-chHHHHhCcCC------C
Confidence 489999999999999999999875 45999999998743 234667899999998876 59999986421 1
Q ss_pred CCHHHHHHHHHHHHHHcCCcccccc-------cccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHH
Q 048028 78 VTKTKKQERVEALINQLGLRSAAKT-------FIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMV 150 (592)
Q Consensus 78 ~~~~~~~~~v~~~l~~lgL~~~~~~-------~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i 150 (592)
.. .+++.+.++.+++.+..++ .. +..++.||||||||++|||+|+.+|++++|||||+|||+.++..+
T Consensus 104 ~~----~~~~~~~~~~~~l~~~~~~l~~~l~~~~-~~~~~~LS~G~~qr~~laral~~~p~llllDEP~~~LD~~~~~~l 178 (221)
T cd03244 104 YS----DEELWQALERVGLKEFVESLPGGLDTVV-EEGGENLSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALI 178 (221)
T ss_pred CC----HHHHHHHHHHhCcHHHHHhccccccccc-ccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHH
Confidence 11 2345666777777654332 11 235678999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCEEEEEecCChhHHHhhhceEEEecCCeEeeecC
Q 048028 151 VNVLQRIAKSGSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNET 195 (592)
Q Consensus 151 ~~~l~~la~~g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~ 195 (592)
.+.|+++++ +.|||+++|+++ ++. .+|++++|++|++++.|+
T Consensus 179 ~~~l~~~~~-~~tii~~sh~~~-~~~-~~d~i~~l~~g~~~~~~~ 220 (221)
T cd03244 179 QKTIREAFK-DCTVLTIAHRLD-TII-DSDRILVLDKGRVVEFDS 220 (221)
T ss_pred HHHHHHhcC-CCEEEEEeCCHH-HHh-hCCEEEEEECCeEEecCC
Confidence 999999864 689999999997 454 599999999999998875
No 281
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=100.00 E-value=1.6e-34 Score=326.32 Aligned_cols=184 Identities=30% Similarity=0.502 Sum_probs=155.0
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCc---ccccceeEEEccCCCCCCCCCHHHHHHHHHHccCCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLES---KLLKIISAYVMQDDLLFPMLTVEETLMFAAEFRLPRS 77 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~---~~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~~~~ 77 (592)
++|+|+||||||||+|+|+|+.+|. +|+|.+||.+++. ...++.++||+|++.+|+. |++||+.++. + .
T Consensus 364 v~IvG~sGsGKSTLl~lL~gl~~p~--~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~-Ti~~Ni~~~~----~-~ 435 (588)
T PRK13657 364 VAIVGPTGAGKSTLINLLQRVFDPQ--SGRILIDGTDIRTVTRASLRRNIAVVFQDAGLFNR-SIEDNIRVGR----P-D 435 (588)
T ss_pred EEEECCCCCCHHHHHHHHhcCcCCC--CCEEEECCEEhhhCCHHHHHhheEEEecCcccccc-cHHHHHhcCC----C-C
Confidence 5899999999999999999998864 5999999998764 4567889999999999986 9999997742 1 1
Q ss_pred CCHHHHHHHHHHHHHHcCCc-------ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHH
Q 048028 78 VTKTKKQERVEALINQLGLR-------SAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMV 150 (592)
Q Consensus 78 ~~~~~~~~~v~~~l~~lgL~-------~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i 150 (592)
.++ +++.++++..+++ +..||.+|+ ..+.||||||||++|||+|+++|++++||||||+||+.++..+
T Consensus 436 ~~d----~~i~~al~~~~l~~~i~~lp~gldt~i~~-~g~~LSgGq~QRialARall~~~~iliLDEpts~LD~~t~~~i 510 (588)
T PRK13657 436 ATD----EEMRAAAERAQAHDFIERKPDGYDTVVGE-RGRQLSGGERQRLAIARALLKDPPILILDEATSALDVETEAKV 510 (588)
T ss_pred CCH----HHHHHHHHHhCHHHHHHhCcccccchhcC-CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHH
Confidence 222 3345555555543 345777875 4667999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCEEEEEecCChhHHHhhhceEEEecCCeEeeecChhhHH
Q 048028 151 VNVLQRIAKSGSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNETPSNLA 200 (592)
Q Consensus 151 ~~~l~~la~~g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~~~~~ 200 (592)
.+.|+++. +++|+|++||+++ ..+.+|++++|++|+++..|+.+++.
T Consensus 511 ~~~l~~~~-~~~tvIiitHr~~--~~~~~D~ii~l~~G~i~~~g~~~~l~ 557 (588)
T PRK13657 511 KAALDELM-KGRTTFIIAHRLS--TVRNADRILVFDNGRVVESGSFDELV 557 (588)
T ss_pred HHHHHHHh-cCCEEEEEEecHH--HHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 99999885 4799999999986 46789999999999999999988774
No 282
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=100.00 E-value=1e-34 Score=333.93 Aligned_cols=183 Identities=26% Similarity=0.432 Sum_probs=153.2
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCc---ccccceeEEEccCCCCCCCCCHHHHHHHHHHccCCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLES---KLLKIISAYVMQDDLLFPMLTVEETLMFAAEFRLPRS 77 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~---~~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~~~~ 77 (592)
+||+||||||||||+|+|+|..+|. +|+|.+||+++++ ...++.++||+|++.+|+. |++|||.++.. .
T Consensus 510 vaIvG~SGsGKSTLl~lL~gl~~p~--~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lF~g-TIreNI~~g~~-----~ 581 (711)
T TIGR00958 510 VALVGPSGSGKSTVAALLQNLYQPT--GGQVLLDGVPLVQYDHHYLHRQVALVGQEPVLFSG-SVRENIAYGLT-----D 581 (711)
T ss_pred EEEECCCCCCHHHHHHHHHhccCCC--CCEEEECCEEHHhcCHHHHHhhceEEecCcccccc-CHHHHHhcCCC-----C
Confidence 5899999999999999999998864 5999999998764 4567889999999999986 99999987521 1
Q ss_pred CCHHHHHHHHHHHHHHcCCcc-------cccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHH
Q 048028 78 VTKTKKQERVEALINQLGLRS-------AAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMV 150 (592)
Q Consensus 78 ~~~~~~~~~v~~~l~~lgL~~-------~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i 150 (592)
.+ ++++.++++..++.+ ..||.+|+ ....||||||||++|||+|+++|+|++||||||+||+.+.+.+
T Consensus 582 ~~----~e~i~~al~~a~l~~~i~~lp~GldT~ige-~G~~LSGGQkQRlalARALl~~p~ILILDEpTSaLD~~te~~i 656 (711)
T TIGR00958 582 TP----DEEIMAAAKAANAHDFIMEFPNGYDTEVGE-KGSQLSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLL 656 (711)
T ss_pred CC----HHHHHHHHHHcCCHHHHHhCCCccCCcccC-CCCcCCHHHHHHHHHHHHHhcCCCEEEEEccccccCHHHHHHH
Confidence 22 344566666666543 46788875 4567999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCEEEEEecCChhHHHhhhceEEEecCCeEeeecChhhHHH
Q 048028 151 VNVLQRIAKSGSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNETPSNLAQ 201 (592)
Q Consensus 151 ~~~l~~la~~g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~~~~~~ 201 (592)
.+ .. ..+++|+|+++|+++ ..+.+|+|++|++|+++..|+++++.+
T Consensus 657 ~~-~~--~~~~~TvIiItHrl~--~i~~aD~IivL~~G~ive~Gt~~eL~~ 702 (711)
T TIGR00958 657 QE-SR--SRASRTVLLIAHRLS--TVERADQILVLKKGSVVEMGTHKQLME 702 (711)
T ss_pred HH-hh--ccCCCeEEEEeccHH--HHHhCCEEEEEECCEEEEeeCHHHHHh
Confidence 88 22 235899999999986 457799999999999999999998754
No 283
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=100.00 E-value=1.6e-34 Score=319.39 Aligned_cols=180 Identities=24% Similarity=0.324 Sum_probs=153.1
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCc---ccccceeEEEccCCCC--C------CCCCHHHHHHHH
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLES---KLLKIISAYVMQDDLL--F------PMLTVEETLMFA 69 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~---~~~~~~~~yv~Q~~~l--~------~~lTV~E~l~f~ 69 (592)
++|+||||||||||||+|+|++++ .+|+|.++|.++.. ...++.++|++|++.. + ..+||+|++.+.
T Consensus 32 ~~liG~nGsGKSTLl~~l~G~~~p--~~G~i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (490)
T PRK10938 32 WAFVGANGSGKSALARALAGELPL--LSGERQSQFSHITRLSFEQLQKLVSDEWQRNNTDMLSPGEDDTGRTTAEIIQDE 109 (490)
T ss_pred EEEECCCCCCHHHHHHHHhccCCC--CCceEEECCcccccCCHHHHHHHhceeccCcchhhcccchhhccccHHHhcccc
Confidence 589999999999999999999875 45999999976532 2234558999998642 1 147888887431
Q ss_pred HHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHH
Q 048028 70 AEFRLPRSVTKTKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFM 149 (592)
Q Consensus 70 ~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~ 149 (592)
.+.+++++++++.+||++..++.++ .|||||||||+||++|+.+|++|||||||+|||+.++..
T Consensus 110 -----------~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~ 173 (490)
T PRK10938 110 -----------VKDPARCEQLAQQFGITALLDRRFK-----YLSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQ 173 (490)
T ss_pred -----------hhHHHHHHHHHHHcCCHhhhhCCcc-----cCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHH
Confidence 1234678899999999887766654 599999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCEEEEEecCChhHHHhhhceEEEecCCeEeeecChhhH
Q 048028 150 VVNVLQRIAKSGSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNETPSNL 199 (592)
Q Consensus 150 i~~~l~~la~~g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~~~~ 199 (592)
+.+.|++++++|+|||+++|++. .+.+.||++++|++|+++..|+++++
T Consensus 174 l~~~l~~~~~~g~tvii~tH~~~-~~~~~~d~v~~l~~G~i~~~~~~~~~ 222 (490)
T PRK10938 174 LAELLASLHQSGITLVLVLNRFD-EIPDFVQFAGVLADCTLAETGEREEI 222 (490)
T ss_pred HHHHHHHHHhcCCeEEEEeCCHH-HHHhhCCEEEEEECCEEEEeCCHHHH
Confidence 99999999888999999999997 68899999999999999999988765
No 284
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=1.5e-34 Score=323.59 Aligned_cols=187 Identities=31% Similarity=0.486 Sum_probs=153.1
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCc---ccccceeEEEccCCCCCCCCCHHHHHHHHHHccCCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLES---KLLKIISAYVMQDDLLFPMLTVEETLMFAAEFRLPRS 77 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~---~~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~~~~ 77 (592)
++|+||||||||||+|+|+|..+|. +|+|.+||.++.. ...++.++||+|++.+++. |++||+.+.. + .
T Consensus 347 ~~ivG~sGsGKSTL~~ll~g~~~~~--~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~-ti~~Ni~~~~----~-~ 418 (544)
T TIGR01842 347 LAIIGPSGSGKSTLARLIVGIWPPT--SGSVRLDGADLKQWDRETFGKHIGYLPQDVELFPG-TVAENIARFG----E-N 418 (544)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCCC--CceEEECCEehhhCCHHHHhhheEEecCCcccccc-cHHHHHhccC----C-C
Confidence 5899999999999999999998754 5999999998754 3467789999999999987 9999997432 1 1
Q ss_pred CCHHHHHH-----HHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHH
Q 048028 78 VTKTKKQE-----RVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVN 152 (592)
Q Consensus 78 ~~~~~~~~-----~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~ 152 (592)
.++++..+ ..++.++.+ .+..||.+|+ ....||||||||++|||+|+++|++|+|||||+|||+.++.++.+
T Consensus 419 ~~~~~~~~~~~~~~~~~~i~~l--~~gl~t~~~~-~g~~LSgGq~qrl~lARall~~~~ililDEpts~LD~~~~~~i~~ 495 (544)
T TIGR01842 419 ADPEKIIEAAKLAGVHELILRL--PDGYDTVIGP-GGATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALAN 495 (544)
T ss_pred CCHHHHHHHHHHhChHHHHHhC--ccccccccCC-CcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccccCHHHHHHHHH
Confidence 22222111 123344433 2334677764 567899999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCEEEEEecCChhHHHhhhceEEEecCCeEeeecChhhHH
Q 048028 153 VLQRIAKSGSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNETPSNLA 200 (592)
Q Consensus 153 ~l~~la~~g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~~~~~ 200 (592)
.|+++..+|+|+|+++|+++ ..+.+|++++|++|++++.|+.+++.
T Consensus 496 ~l~~~~~~~~tvi~ith~~~--~~~~~d~i~~l~~G~i~~~g~~~~l~ 541 (544)
T TIGR01842 496 AIKALKARGITVVVITHRPS--LLGCVDKILVLQDGRIARFGERDEVL 541 (544)
T ss_pred HHHHHhhCCCEEEEEeCCHH--HHHhCCEEEEEECCEEEeeCCHHHHh
Confidence 99999767899999999986 45789999999999999999988764
No 285
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=100.00 E-value=2.6e-34 Score=274.41 Aligned_cols=140 Identities=31% Similarity=0.565 Sum_probs=126.4
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCc---ccccceeEEEccCCCCCCCCCHHHHHHHHHHccCCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLES---KLLKIISAYVMQDDLLFPMLTVEETLMFAAEFRLPRS 77 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~---~~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~~~~ 77 (592)
++|+|||||||||||++|+|..++. +|+|.++|+++.. ...++.++|++|++.+++. ||+||+
T Consensus 31 ~~i~G~nGsGKStLl~~l~G~~~~~--~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~-tv~~~l----------- 96 (173)
T cd03246 31 LAIIGPSGSGKSTLARLILGLLRPT--SGRVRLDGADISQWDPNELGDHVGYLPQDDELFSG-SIAENI----------- 96 (173)
T ss_pred EEEECCCCCCHHHHHHHHHhccCCC--CCeEEECCEEcccCCHHHHHhheEEECCCCccccC-cHHHHC-----------
Confidence 4899999999999999999998754 5999999998753 2345678999999988875 999886
Q ss_pred CCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 048028 78 VTKTKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVNVLQRI 157 (592)
Q Consensus 78 ~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~l 157 (592)
||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++
T Consensus 97 ----------------------------------LS~G~~qrv~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~ 142 (173)
T cd03246 97 ----------------------------------LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAAL 142 (173)
T ss_pred ----------------------------------cCHHHHHHHHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999
Q ss_pred HHcCCEEEEEecCChhHHHhhhceEEEecCCeE
Q 048028 158 AKSGSIVIMSIHQPSYRILSLLDRLIILSHGQS 190 (592)
Q Consensus 158 a~~g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~ 190 (592)
+++|+|+|+++|+++ .+ +.+|++++|++|++
T Consensus 143 ~~~~~tii~~sh~~~-~~-~~~d~v~~l~~G~i 173 (173)
T cd03246 143 KAAGATRIVIAHRPE-TL-ASADRILVLEDGRV 173 (173)
T ss_pred HhCCCEEEEEeCCHH-HH-HhCCEEEEEECCCC
Confidence 878999999999986 45 68999999999974
No 286
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.5e-35 Score=308.55 Aligned_cols=185 Identities=37% Similarity=0.590 Sum_probs=159.5
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCc---ccccceeEEEccCCCCCCCCCHHHHHHHHHHccCCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLES---KLLKIISAYVMQDDLLFPMLTVEETLMFAAEFRLPRS 77 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~---~~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~~~~ 77 (592)
+||+|+||||||||++.|+|-.+++ +|+|.+||.++.. +..++.+++++|...+|.+ |+|+||.++. | +
T Consensus 367 vAIlG~SGsGKSTllqLl~~~~~~~--~G~i~~~g~~~~~l~~~~~~e~i~vl~Qr~hlF~~-Tlr~NL~lA~----~-~ 438 (573)
T COG4987 367 VAILGRSGSGKSTLLQLLAGAWDPQ--QGSITLNGVEIASLDEQALRETISVLTQRVHLFSG-TLRDNLRLAN----P-D 438 (573)
T ss_pred EEEECCCCCCHHHHHHHHHhccCCC--CCeeeECCcChhhCChhhHHHHHhhhccchHHHHH-HHHHHHhhcC----C-C
Confidence 5899999999999999999998865 5999999988753 4467788999999999987 9999998753 1 2
Q ss_pred CCHHHHHHHHHHHHHHcCCccc-------ccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHH
Q 048028 78 VTKTKKQERVEALINQLGLRSA-------AKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMV 150 (592)
Q Consensus 78 ~~~~~~~~~v~~~l~~lgL~~~-------~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i 150 (592)
.+ .+.+.++++.+||++. .||.+| +..+.||||||||++|||+|++|.++++|||||.|||+.+..++
T Consensus 439 As----DEel~~aL~qvgL~~l~~~~p~gl~t~lg-e~G~~LSGGE~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~v 513 (573)
T COG4987 439 AS----DEELWAALQQVGLEKLLESAPDGLNTWLG-EGGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQV 513 (573)
T ss_pred CC----HHHHHHHHHHcCHHHHHHhChhhhhchhc-cCCCcCCchHHHHHHHHHHHHcCCCeEEecCCcccCChhhHHHH
Confidence 22 3456778888887654 456676 46778999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCEEEEEecCChhHHHhhhceEEEecCCeEeeecChhhHHH
Q 048028 151 VNVLQRIAKSGSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNETPSNLAQ 201 (592)
Q Consensus 151 ~~~l~~la~~g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~~~~~~ 201 (592)
++.|.+-++ |+|+|++||+... .+.||||++|++|+++.+|..+++..
T Consensus 514 L~ll~~~~~-~kTll~vTHrL~~--le~~drIivl~~Gkiie~G~~~~Ll~ 561 (573)
T COG4987 514 LALLFEHAE-GKTLLMVTHRLRG--LERMDRIIVLDNGKIIEEGTHAELLA 561 (573)
T ss_pred HHHHHHHhc-CCeEEEEeccccc--HhhcCEEEEEECCeeeecCCHHhhhc
Confidence 999998775 8999999999873 67899999999999999999988753
No 287
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=100.00 E-value=2.2e-34 Score=324.22 Aligned_cols=185 Identities=29% Similarity=0.457 Sum_probs=157.2
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCc---ccccceeEEEccCCCCCCCCCHHHHHHHHHHccCCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLES---KLLKIISAYVMQDDLLFPMLTVEETLMFAAEFRLPRS 77 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~---~~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~~~~ 77 (592)
++|+|+||||||||+|+|+|+.+|. +|+|.+||.+++. ..+++.++|++|++.+|+. |++|||.++. +..
T Consensus 361 v~IvG~sGsGKSTLl~lL~gl~~~~--~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~-Ti~~Ni~~~~----~~~ 433 (571)
T TIGR02203 361 VALVGRSGSGKSTLVNLIPRFYEPD--SGQILLDGHDLADYTLASLRRQVALVSQDVVLFND-TIANNIAYGR----TEQ 433 (571)
T ss_pred EEEECCCCCCHHHHHHHHHhccCCC--CCeEEECCEeHHhcCHHHHHhhceEEccCcccccc-cHHHHHhcCC----CCC
Confidence 5899999999999999999998864 5999999998753 4567789999999999987 9999997642 111
Q ss_pred CCHHHHHHHHHHHHHHcCCc-------ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHH
Q 048028 78 VTKTKKQERVEALINQLGLR-------SAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMV 150 (592)
Q Consensus 78 ~~~~~~~~~v~~~l~~lgL~-------~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i 150 (592)
.+ +++++++++..|++ +-.||.+|+. .+.||||||||++|||+++.+|++++||||||+||+.+++.+
T Consensus 434 ~~----~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~-g~~LSgGqrQRiaLARall~~~~illLDEpts~LD~~~~~~i 508 (571)
T TIGR02203 434 AD----RAEIERALAAAYAQDFVDKLPLGLDTPIGEN-GVLLSGGQRQRLAIARALLKDAPILILDEATSALDNESERLV 508 (571)
T ss_pred CC----HHHHHHHHHHcChHHHHHhCcCcccceecCC-CCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHH
Confidence 22 34566677776654 3457888764 567999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCEEEEEecCChhHHHhhhceEEEecCCeEeeecChhhHH
Q 048028 151 VNVLQRIAKSGSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNETPSNLA 200 (592)
Q Consensus 151 ~~~l~~la~~g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~~~~~ 200 (592)
++.|++++ +++|+|++||+++ ..+.||+|++|++|+++..|+.+++.
T Consensus 509 ~~~L~~~~-~~~tiIiitH~~~--~~~~~D~ii~l~~g~i~~~g~~~~l~ 555 (571)
T TIGR02203 509 QAALERLM-QGRTTLVIAHRLS--TIEKADRIVVMDDGRIVERGTHNELL 555 (571)
T ss_pred HHHHHHHh-CCCEEEEEehhhH--HHHhCCEEEEEeCCEEEeeCCHHHHH
Confidence 99999985 4799999999985 57889999999999999999998874
No 288
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=100.00 E-value=4.1e-34 Score=290.18 Aligned_cols=183 Identities=23% Similarity=0.364 Sum_probs=145.0
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCc---ccccceeEEEccCCCCCCCCCHHHHHHHHHHccCCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLES---KLLKIISAYVMQDDLLFPMLTVEETLMFAAEFRLPRS 77 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~---~~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~~~~ 77 (592)
++|+|+||||||||+++|+|+.++ .+|+|.++|+++.. ...++.++|++|++.+++. |++||+.... .
T Consensus 50 ~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~i~g~~i~~~~~~~~~~~i~~v~q~~~l~~~-tv~~nl~~~~------~ 120 (257)
T cd03288 50 VGICGRTGSGKSSLSLAFFRMVDI--FDGKIVIDGIDISKLPLHTLRSRLSIILQDPILFSG-SIRFNLDPEC------K 120 (257)
T ss_pred EEEECCCCCCHHHHHHHHHcccCC--CCCeEEECCEEhhhCCHHHHhhhEEEECCCCccccc-HHHHhcCcCC------C
Confidence 489999999999999999999875 45999999998753 2346678999999988875 9999985321 0
Q ss_pred CCHHHHHHHHHHHHHHcCCcccc-------cccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHH
Q 048028 78 VTKTKKQERVEALINQLGLRSAA-------KTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMV 150 (592)
Q Consensus 78 ~~~~~~~~~v~~~l~~lgL~~~~-------~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i 150 (592)
.. .+++.++++..++.+.. ++.+ +...+.||||||||++||++|+.+|++|+|||||+|||+.++..+
T Consensus 121 ~~----~~~~~~~l~~~~l~~~~~~~~~~l~~~~-~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l 195 (257)
T cd03288 121 CT----DDRLWEALEIAQLKNMVKSLPGGLDAVV-TEGGENFSVGQRQLFCLARAFVRKSSILIMDEATASIDMATENIL 195 (257)
T ss_pred CC----HHHHHHHHHHhCcHHHHhhcccccCcEe-ccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHH
Confidence 11 12233333333333222 2222 234568999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCEEEEEecCChhHHHhhhceEEEecCCeEeeecChhhHH
Q 048028 151 VNVLQRIAKSGSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNETPSNLA 200 (592)
Q Consensus 151 ~~~l~~la~~g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~~~~~ 200 (592)
.+.++++. ++.|+|+++|+++ .+. .+||+++|++|+++..|+++++.
T Consensus 196 ~~~l~~~~-~~~tiii~sh~~~-~~~-~~dri~~l~~G~i~~~g~~~~~~ 242 (257)
T cd03288 196 QKVVMTAF-ADRTVVTIAHRVS-TIL-DADLVLVLSRGILVECDTPENLL 242 (257)
T ss_pred HHHHHHhc-CCCEEEEEecChH-HHH-hCCEEEEEECCEEEEeCCHHHHH
Confidence 99999975 4899999999997 455 49999999999999999987764
No 289
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=6.5e-34 Score=279.40 Aligned_cols=168 Identities=23% Similarity=0.407 Sum_probs=138.1
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCc---ccccceeEEEccCCCCCCCCCHHHHHHHHHHccCCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLES---KLLKIISAYVMQDDLLFPMLTVEETLMFAAEFRLPRS 77 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~---~~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~~~~ 77 (592)
++|+||||||||||+++|+|+.++. +|+|.++|+++.. ...++.++|++|++.+++. ||+||+.+.. .
T Consensus 37 ~~i~G~nGsGKSTLl~~l~Gl~~~~--~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~~~l~~~~------~ 107 (207)
T cd03369 37 IGIVGRTGAGKSTLILALFRFLEAE--EGKIEIDGIDISTIPLEDLRSSLTIIPQDPTLFSG-TIRSNLDPFD------E 107 (207)
T ss_pred EEEECCCCCCHHHHHHHHhcccCCC--CCeEEECCEEhHHCCHHHHHhhEEEEecCCcccCc-cHHHHhcccC------C
Confidence 5899999999999999999998754 5999999998743 2345679999999988875 9999996421 1
Q ss_pred CCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 048028 78 VTKTKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVNVLQRI 157 (592)
Q Consensus 78 ~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~l 157 (592)
... +.+.+.++ + +..++.||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++
T Consensus 108 ~~~----~~~~~~l~---~---------~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~ 171 (207)
T cd03369 108 YSD----EEIYGALR---V---------SEGGLNLSQGQRQLLCLARALLKRPRVLVLDEATASIDYATDALIQKTIREE 171 (207)
T ss_pred CCH----HHHHHHhh---c---------cCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHh
Confidence 111 22333333 2 2345679999999999999999999999999999999999999999999998
Q ss_pred HHcCCEEEEEecCChhHHHhhhceEEEecCCeEeeecCh
Q 048028 158 AKSGSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNETP 196 (592)
Q Consensus 158 a~~g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~ 196 (592)
. +|+|+|+++|+++ ++.. +|++++|++|+++..|++
T Consensus 172 ~-~~~tiii~th~~~-~~~~-~d~v~~l~~g~i~~~g~~ 207 (207)
T cd03369 172 F-TNSTILTIAHRLR-TIID-YDKILVMDAGEVKEYDHP 207 (207)
T ss_pred c-CCCEEEEEeCCHH-HHhh-CCEEEEEECCEEEecCCC
Confidence 5 4899999999997 4554 999999999999887763
No 290
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=100.00 E-value=3.8e-33 Score=317.14 Aligned_cols=187 Identities=27% Similarity=0.438 Sum_probs=162.0
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCcc---c----ccceeEEEccCCCCCCCCCHHHHHHHHHHcc
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLESK---L----LKIISAYVMQDDLLFPMLTVEETLMFAAEFR 73 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~~---~----~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~ 73 (592)
++|+||||||||||+|+|+|+.++. +|+|.+||+++... . .++.++|++|+..+++++|+.||+.+.....
T Consensus 37 ~~l~G~nGsGKSTLl~~i~Gl~~~~--~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~ 114 (648)
T PRK10535 37 VAIVGASGSGKSTLMNILGCLDKPT--SGTYRVAGQDVATLDADALAQLRREHFGFIFQRYHLLSHLTAAQNVEVPAVYA 114 (648)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCCC--CeEEEECCEEcCcCCHHHHHHHHhccEEEEeCCcccCCCCCHHHHHHHHHHHc
Confidence 4899999999999999999998754 59999999987642 1 1456899999999999999999998865432
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHH
Q 048028 74 LPRSVTKTKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVNV 153 (592)
Q Consensus 74 ~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~ 153 (592)
..+.++.++++.++++.+||.+..|+.++ .||||||||++|||+|+.+|++|+|||||+|||+.+++.+.+.
T Consensus 115 ---~~~~~~~~~~~~~~l~~lgl~~~~~~~~~-----~LS~Gq~qrv~LAraL~~~P~lLllDEP~~gLD~~s~~~l~~l 186 (648)
T PRK10535 115 ---GLERKQRLLRAQELLQRLGLEDRVEYQPS-----QLSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAI 186 (648)
T ss_pred ---CCCHHHHHHHHHHHHHHCCChhhhcCCcc-----cCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHH
Confidence 23345566788999999999887766654 6999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCEEEEEecCChhHHHhhhceEEEecCCeEeeecChhhH
Q 048028 154 LQRIAKSGSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNETPSNL 199 (592)
Q Consensus 154 l~~la~~g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~~~~ 199 (592)
|++++++|+|+|+++|+++ .+ +.|||+++|++|++++.|++++.
T Consensus 187 l~~l~~~g~tilivsH~~~-~~-~~~d~i~~l~~G~i~~~g~~~~~ 230 (648)
T PRK10535 187 LHQLRDRGHTVIIVTHDPQ-VA-AQAERVIEIRDGEIVRNPPAQEK 230 (648)
T ss_pred HHHHHhcCCEEEEECCCHH-HH-HhCCEEEEEECCEEEeecCcccc
Confidence 9999878999999999987 34 57999999999999999988653
No 291
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=3.2e-34 Score=329.52 Aligned_cols=184 Identities=28% Similarity=0.477 Sum_probs=154.7
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCc---ccccceeEEEccCCCCCCCCCHHHHHHHHHHccCCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLES---KLLKIISAYVMQDDLLFPMLTVEETLMFAAEFRLPRS 77 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~---~~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~~~~ 77 (592)
+||+|+||||||||+|+|+|+.+|. +|+|.+||++++. ..+|+.++||+|++.+|+. |++||+.++. | .
T Consensus 486 vaivG~sGsGKSTL~~ll~g~~~p~--~G~I~idg~~i~~~~~~~~r~~i~~v~q~~~lf~~-ti~eNi~~~~----~-~ 557 (694)
T TIGR01846 486 IGIVGPSGSGKSTLTKLLQRLYTPQ--HGQVLVDGVDLAIADPAWLRRQMGVVLQENVLFSR-SIRDNIALCN----P-G 557 (694)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCCC--CceEEECCEehhhCCHHHHHHhCeEEccCCeehhh-hHHHHHhcCC----C-C
Confidence 5899999999999999999998864 5999999998754 4567889999999999986 9999997632 1 1
Q ss_pred CCHHHHHHHHHHHHHHcCCc-------ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHH
Q 048028 78 VTKTKKQERVEALINQLGLR-------SAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMV 150 (592)
Q Consensus 78 ~~~~~~~~~v~~~l~~lgL~-------~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i 150 (592)
.++ +++.++++..++. +..||.+|+ ....||||||||++|||||+++|++|+||||||+||+.+..++
T Consensus 558 ~~~----~~i~~a~~~~~l~~~i~~lp~gl~t~i~~-~g~~LSgGq~qri~lARall~~~~ililDEpts~LD~~~~~~i 632 (694)
T TIGR01846 558 APF----EHVIHAAKLAGAHDFISELPQGYNTEVGE-KGANLSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALI 632 (694)
T ss_pred CCH----HHHHHHHHHcChHHHHHhCcCccCcEecC-CCCCCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHH
Confidence 222 3344455555443 346788875 4678999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCEEEEEecCChhHHHhhhceEEEecCCeEeeecChhhHH
Q 048028 151 VNVLQRIAKSGSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNETPSNLA 200 (592)
Q Consensus 151 ~~~l~~la~~g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~~~~~ 200 (592)
.+.|+++. +++|+|+++|+++ ..+.||++++|++|++++.|+.+++.
T Consensus 633 ~~~l~~~~-~~~t~i~itH~~~--~~~~~d~ii~l~~G~i~~~g~~~~l~ 679 (694)
T TIGR01846 633 MRNMREIC-RGRTVIIIAHRLS--TVRACDRIIVLEKGQIAESGRHEELL 679 (694)
T ss_pred HHHHHHHh-CCCEEEEEeCChH--HHHhCCEEEEEeCCEEEEeCCHHHHH
Confidence 99999985 5899999999996 34679999999999999999998874
No 292
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=100.00 E-value=4.6e-34 Score=273.89 Aligned_cols=146 Identities=31% Similarity=0.570 Sum_probs=128.9
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCc--ccccceeEEEccCCCCCCCCCHHHHHHHHHHccCCCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLES--KLLKIISAYVMQDDLLFPMLTVEETLMFAAEFRLPRSV 78 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~--~~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~~~~~ 78 (592)
++|+||||||||||+++|+|..++. +|+|.++|+++.. ...++.++|++|++.+++ .|++||+
T Consensus 31 ~~i~G~nGsGKStLl~~l~G~~~~~--~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~~i------------ 95 (178)
T cd03247 31 IALLGRSGSGKSTLLQLLTGDLKPQ--QGEITLDGVPVSDLEKALSSLISVLNQRPYLFD-TTLRNNL------------ 95 (178)
T ss_pred EEEECCCCCCHHHHHHHHhccCCCC--CCEEEECCEEHHHHHHHHHhhEEEEccCCeeec-ccHHHhh------------
Confidence 4899999999999999999998754 5999999997643 234567899999998886 6999886
Q ss_pred CHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 048028 79 TKTKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVNVLQRIA 158 (592)
Q Consensus 79 ~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~la 158 (592)
++.||||||||++|||+++.+|++++|||||+|||+.++..+++.|++++
T Consensus 96 ------------------------------~~~LS~G~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~ 145 (178)
T cd03247 96 ------------------------------GRRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVL 145 (178)
T ss_pred ------------------------------cccCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHc
Confidence 23599999999999999999999999999999999999999999999996
Q ss_pred HcCCEEEEEecCChhHHHhhhceEEEecCCeEeeec
Q 048028 159 KSGSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNE 194 (592)
Q Consensus 159 ~~g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g 194 (592)
+++|||+++|++. ++ ..+|++++|++|++++.|
T Consensus 146 -~~~tii~~sh~~~-~~-~~~d~~~~l~~g~i~~~~ 178 (178)
T cd03247 146 -KDKTLIWITHHLT-GI-EHMDKILFLENGKIIMQG 178 (178)
T ss_pred -CCCEEEEEecCHH-HH-HhCCEEEEEECCEEEecC
Confidence 5899999999997 45 479999999999998754
No 293
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=8.4e-34 Score=277.19 Aligned_cols=166 Identities=23% Similarity=0.347 Sum_probs=140.7
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCc--ccccceeEEEccCCCCCCCCCHHHHHHHHHHccCCCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLES--KLLKIISAYVMQDDLLFPMLTVEETLMFAAEFRLPRSV 78 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~--~~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~~~~~ 78 (592)
++|+||||||||||+++|+|+.++ .+|+|.++|+++.. ...++.++|++|+..+++.+||+||+.+.....
T Consensus 30 ~~l~G~nGsGKSTLl~~i~G~~~~--~~G~v~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~~~~~~~~~----- 102 (200)
T PRK13540 30 LHLKGSNGAGKTTLLKLIAGLLNP--EKGEILFERQSIKKDLCTYQKQLCFVGHRSGINPYLTLRENCLYDIHFS----- 102 (200)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCC--CCeeEEECCCccccCHHHHHhheEEeccccccCcCCCHHHHHHHHHhcC-----
Confidence 589999999999999999999875 45999999988753 234567899999999989999999998864211
Q ss_pred CHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 048028 79 TKTKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVNVLQRIA 158 (592)
Q Consensus 79 ~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~la 158 (592)
. .+.+++++++.+++.+..++.++ .||||||||++||++++.+|++|+|||||+|||+.++..+.+.|++++
T Consensus 103 -~--~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~~rv~laral~~~p~~lilDEP~~~LD~~~~~~l~~~l~~~~ 174 (200)
T PRK13540 103 -P--GAVGITELCRLFSLEHLIDYPCG-----LLSSGQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLTIITKIQEHR 174 (200)
T ss_pred -c--chHHHHHHHHHcCCchhhhCChh-----hcCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHH
Confidence 1 12468899999999876665544 599999999999999999999999999999999999999999999998
Q ss_pred HcCCEEEEEecCChhHHHhhhceEE
Q 048028 159 KSGSIVIMSIHQPSYRILSLLDRLI 183 (592)
Q Consensus 159 ~~g~tvi~~~H~~~~~i~~~~D~v~ 183 (592)
++|.|+|+++|++. ..+.+|...
T Consensus 175 ~~~~tiii~sh~~~--~~~~~d~~~ 197 (200)
T PRK13540 175 AKGGAVLLTSHQDL--PLNKADYEE 197 (200)
T ss_pred HcCCEEEEEeCCch--hccccchhh
Confidence 78999999999986 345677543
No 294
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=100.00 E-value=1.4e-33 Score=278.38 Aligned_cols=180 Identities=21% Similarity=0.223 Sum_probs=146.6
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEE-ECCEecCcccccceeEEEccCCCCCCCCCHHHHHHHHHHccCCCCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVT-LNGEVLESKLLKIISAYVMQDDLLFPMLTVEETLMFAAEFRLPRSVT 79 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~-i~g~~~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~ 79 (592)
++|+||||||||||+|+|+|+.++ .+|+|. ++|..+ .+.++..+++.+|++||+.+.+..+. .+
T Consensus 16 ~~l~G~NGsGKSTLlk~i~Gl~~~--~sG~i~~~~~~~~----------~~~~~~~l~~~ltv~enl~~~~~~~~---~~ 80 (213)
T PRK15177 16 IGILAAPGSGKTTLTRLLCGLDAP--DEGDFIGLRGDAL----------PLGANSFILPGLTGEENARMMASLYG---LD 80 (213)
T ss_pred EEEECCCCCCHHHHHHHHhCCccC--CCCCEEEecCcee----------ccccccccCCcCcHHHHHHHHHHHcC---CC
Confidence 589999999999999999999875 459997 777532 12345678999999999998765431 22
Q ss_pred HHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Q 048028 80 KTKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVNVLQRIAK 159 (592)
Q Consensus 80 ~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~la~ 159 (592)
.++. .+.+.+.++|++..|+.++ .||||||||++||++|+.+|++++|||||+++|+.++..+.+.+.+..+
T Consensus 81 ~~~~---~~~~~~~~~l~~~~~~~~~-----~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~~~~~~~~~~l~~~~~ 152 (213)
T PRK15177 81 GDEF---SHFCYQLTQLEQCYTDRVS-----EYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNATQLRMQAALACQLQ 152 (213)
T ss_pred HHHH---HHHHHHHhChhHHhhchHh-----hcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHhh
Confidence 2222 2344456788777766654 5999999999999999999999999999999999999999998866544
Q ss_pred cCCEEEEEecCChhHHHhhhceEEEecCCeEeeecChhhHHHHHHH
Q 048028 160 SGSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNETPSNLAQFFAE 205 (592)
Q Consensus 160 ~g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~~~~~~~f~~ 205 (592)
++++|+++|+++ ++..+||++++|++|++++.|+.+++.++++.
T Consensus 153 -~~~ii~vsH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~ 196 (213)
T PRK15177 153 -QKGLIVLTHNPR-LIKEHCHAFGVLLHGKITMCEDLAQATALFEQ 196 (213)
T ss_pred -CCcEEEEECCHH-HHHHhcCeeEEEECCeEEEeCCHHHHHHHHHH
Confidence 468999999997 57889999999999999999999999877654
No 295
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=6.3e-34 Score=319.96 Aligned_cols=184 Identities=24% Similarity=0.434 Sum_probs=154.3
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCc---ccccceeEEEccCCCCCCCCCHHHHHHHHHHccCCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLES---KLLKIISAYVMQDDLLFPMLTVEETLMFAAEFRLPRS 77 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~---~~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~~~~ 77 (592)
++|+||||||||||+++|+|..+|. +|+|.+||+++.. ..+++.++|++|++.+|+. |++||+.++. + .
T Consensus 344 ~~ivG~sGsGKSTLl~ll~g~~~p~--~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~-ti~~Ni~~~~----~-~ 415 (569)
T PRK10789 344 LGICGPTGSGKSTLLSLIQRHFDVS--EGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFLFSD-TVANNIALGR----P-D 415 (569)
T ss_pred EEEECCCCCCHHHHHHHHhcccCCC--CCEEEECCEEHhhCCHHHHHhheEEEccCCeeccc-cHHHHHhcCC----C-C
Confidence 5899999999999999999998854 5999999998753 3467789999999999986 9999997642 1 1
Q ss_pred CCHHHHHHHHHHHHHHcCC-------cccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHH
Q 048028 78 VTKTKKQERVEALINQLGL-------RSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMV 150 (592)
Q Consensus 78 ~~~~~~~~~v~~~l~~lgL-------~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i 150 (592)
.++ +++++.++..++ .+..||.+|+ ....||||||||++|||+|+++|++++|||||++||+.+...+
T Consensus 416 ~~~----~~~~~~~~~~~l~~~i~~lp~gl~t~~~~-~g~~LSgGq~qRi~lARall~~~~illlDEpts~LD~~~~~~i 490 (569)
T PRK10789 416 ATQ----QEIEHVARLASVHDDILRLPQGYDTEVGE-RGVMLSGGQKQRISIARALLLNAEILILDDALSAVDGRTEHQI 490 (569)
T ss_pred CCH----HHHHHHHHHcCCHHHHHhCcCcccceecC-CCCcCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHH
Confidence 222 234445555544 3445788875 4667999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCEEEEEecCChhHHHhhhceEEEecCCeEeeecChhhHH
Q 048028 151 VNVLQRIAKSGSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNETPSNLA 200 (592)
Q Consensus 151 ~~~l~~la~~g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~~~~~ 200 (592)
.+.|+++. +++|+|+++|+++ ..+.+|++++|++|+++..|+.+++.
T Consensus 491 ~~~l~~~~-~~~tii~itH~~~--~~~~~d~i~~l~~G~i~~~g~~~~l~ 537 (569)
T PRK10789 491 LHNLRQWG-EGRTVIISAHRLS--ALTEASEILVMQHGHIAQRGNHDQLA 537 (569)
T ss_pred HHHHHHHh-CCCEEEEEecchh--HHHcCCEEEEEeCCEEEEecCHHHHH
Confidence 99999985 5899999999996 45679999999999999999988764
No 296
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=100.00 E-value=1.4e-33 Score=287.59 Aligned_cols=190 Identities=28% Similarity=0.468 Sum_probs=170.4
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCcc------cccceeEEEccCC--CCCCCCCHHHHHHHHHHc
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLESK------LLKIISAYVMQDD--LLFPMLTVEETLMFAAEF 72 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~~------~~~~~~~yv~Q~~--~l~~~lTV~E~l~f~~~l 72 (592)
++|+|.||||||||=.+|.+++++ +|+|.++|++++.. ..|+.+-.|+||+ .+.|.|||.|-+.-+...
T Consensus 316 lGlVGESGSGKsTlG~allrL~~s---~G~I~F~G~~i~~~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~v 392 (534)
T COG4172 316 LGLVGESGSGKSTLGLALLRLIPS---QGEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRV 392 (534)
T ss_pred EEEEecCCCCcchHHHHHHhhcCc---CceEEECCccccccChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhh
Confidence 589999999999999999999863 39999999998642 3566788999998 599999999999888776
Q ss_pred cCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHH
Q 048028 73 RLPRSVTKTKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVN 152 (592)
Q Consensus 73 ~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~ 152 (592)
..| ..++.++.+++.+.|++.||+...- ++++.+.|||||||++||||++.+|++++||||||+||-.-+.++++
T Consensus 393 h~~-~ls~~eR~~rv~~aL~EVGLDp~~r----~RYPhEFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~ 467 (534)
T COG4172 393 HEP-KLSAAERDQRVIEALEEVGLDPATR----NRYPHEFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLD 467 (534)
T ss_pred cCC-CCCHHHHHHHHHHHHHHcCCChhHh----hcCCcccCcchhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHH
Confidence 644 5788999999999999999985321 56788999999999999999999999999999999999999999999
Q ss_pred HHHHHHHc-CCEEEEEecCChhHHHhhhceEEEecCCeEeeecChhhH
Q 048028 153 VLQRIAKS-GSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNETPSNL 199 (592)
Q Consensus 153 ~l~~la~~-g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~~~~ 199 (592)
+|++|.++ |.+-++++||.. -+..+||+|++|++|++|+.|+.+++
T Consensus 468 LLr~LQ~k~~LsYLFISHDL~-VvrAl~~~viVm~~GkiVE~G~~~~i 514 (534)
T COG4172 468 LLRDLQQKHGLSYLFISHDLA-VVRALCHRVIVMRDGKIVEQGPTEAV 514 (534)
T ss_pred HHHHHHHHhCCeEEEEeccHH-HHHHhhceEEEEeCCEEeeeCCHHHH
Confidence 99999864 889999999997 58899999999999999999999887
No 297
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=100.00 E-value=6.2e-34 Score=320.89 Aligned_cols=184 Identities=32% Similarity=0.514 Sum_probs=154.8
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCc---ccccceeEEEccCCCCCCCCCHHHHHHHHHHccCCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLES---KLLKIISAYVMQDDLLFPMLTVEETLMFAAEFRLPRS 77 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~---~~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~~~~ 77 (592)
++|+||||||||||+|+|+|+.+|. +|+|.+||.+++. ..+++.++|++|++.+|+. |++||+.++. | .
T Consensus 369 i~IvG~sGsGKSTLlklL~gl~~p~--~G~I~i~g~~i~~~~~~~~~~~i~~~~Q~~~lf~~-Ti~~Ni~~~~----~-~ 440 (576)
T TIGR02204 369 VALVGPSGAGKSTLFQLLLRFYDPQ--SGRILLDGVDLRQLDPAELRARMALVPQDPVLFAA-SVMENIRYGR----P-D 440 (576)
T ss_pred EEEECCCCCCHHHHHHHHHhccCCC--CCEEEECCEEHHhcCHHHHHHhceEEccCCccccc-cHHHHHhcCC----C-C
Confidence 5899999999999999999998864 5999999998754 4567789999999999986 9999997642 1 1
Q ss_pred CCHHHHHHHHHHHHHHcCCcc-------cccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHH
Q 048028 78 VTKTKKQERVEALINQLGLRS-------AAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMV 150 (592)
Q Consensus 78 ~~~~~~~~~v~~~l~~lgL~~-------~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i 150 (592)
.+ ++++++.++..|+.+ ..|+.+|+ ....||||||||++|||+++++|++++||||||+||+.+++.+
T Consensus 441 ~~----~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~-~g~~LSgGq~Qrl~laRal~~~~~ililDEpts~lD~~~~~~i 515 (576)
T TIGR02204 441 AT----DEEVEAAARAAHAHEFISALPEGYDTYLGE-RGVTLSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQLV 515 (576)
T ss_pred CC----HHHHHHHHHHcCcHHHHHhCCCCCCceeCC-CCCcCCHHHHHHHHHHHHHHhCCCeEEEeCcccccCHHHHHHH
Confidence 22 234566666666542 34677765 4567999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCEEEEEecCChhHHHhhhceEEEecCCeEeeecChhhHH
Q 048028 151 VNVLQRIAKSGSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNETPSNLA 200 (592)
Q Consensus 151 ~~~l~~la~~g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~~~~~ 200 (592)
.+.|+++. +++|+|++||+++ ....+||++.|++|+++..|+++++.
T Consensus 516 ~~~l~~~~-~~~t~IiitH~~~--~~~~~d~vi~l~~g~~~~~g~~~~l~ 562 (576)
T TIGR02204 516 QQALETLM-KGRTTLIIAHRLA--TVLKADRIVVMDQGRIVAQGTHAELI 562 (576)
T ss_pred HHHHHHHh-CCCEEEEEecchH--HHHhCCEEEEEECCEEEeeecHHHHH
Confidence 99999985 4899999999985 46789999999999999999988763
No 298
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=1.7e-34 Score=262.73 Aligned_cols=177 Identities=27% Similarity=0.442 Sum_probs=153.9
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCc---ccccceeEEEccCCCCCCCCCHHHHHHHHHHccCCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLES---KLLKIISAYVMQDDLLFPMLTVEETLMFAAEFRLPRS 77 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~---~~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~~~~ 77 (592)
.+|.||||||||||||+++.+.+|+ +|++++.|++++. ..+|..++|+.|.+.||+. ||++||.|..++|..+
T Consensus 32 iaitGPSG~GKStllk~va~Lisp~--~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLfg~-tVeDNlifP~~~r~rr- 107 (223)
T COG4619 32 IAITGPSGCGKSTLLKIVASLISPT--SGTLLFEGEDVSTLKPEAYRQQVSYCAQTPALFGD-TVEDNLIFPWQIRNRR- 107 (223)
T ss_pred EEEeCCCCccHHHHHHHHHhccCCC--CceEEEcCccccccChHHHHHHHHHHHcCcccccc-chhhccccchHHhccC-
Confidence 3799999999999999999998864 5999999999864 4678889999999999998 9999999987776321
Q ss_pred CCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 048028 78 VTKTKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVNVLQRI 157 (592)
Q Consensus 78 ~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~l 157 (592)
.++++..++++++++.+..- +..+..||||||||++|+|.|..-|+||+||||||+||+.+++.|-++|.++
T Consensus 108 ----~dr~aa~~llar~~l~~~~L----~k~it~lSGGE~QriAliR~Lq~~P~ILLLDE~TsALD~~nkr~ie~mi~~~ 179 (223)
T COG4619 108 ----PDRAAALDLLARFALPDSIL----TKNITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRNIEEMIHRY 179 (223)
T ss_pred ----CChHHHHHHHHHcCCchhhh----cchhhhccchHHHHHHHHHHhhcCCceEEecCchhhcChhhHHHHHHHHHHH
Confidence 14466788999999976432 2345569999999999999999999999999999999999999999999998
Q ss_pred H-HcCCEEEEEecCChhHHHhhhceEEEecCCeE
Q 048028 158 A-KSGSIVIMSIHQPSYRILSLLDRLIILSHGQS 190 (592)
Q Consensus 158 a-~~g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~ 190 (592)
. .+...++.+||++. +..+.+||++-+..|++
T Consensus 180 v~~q~vAv~WiTHd~d-qa~rha~k~itl~~G~~ 212 (223)
T COG4619 180 VREQNVAVLWITHDKD-QAIRHADKVITLQPGHA 212 (223)
T ss_pred hhhhceEEEEEecChH-HHhhhhheEEEeccCcc
Confidence 7 46889999999997 67899999999999875
No 299
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=100.00 E-value=1.1e-33 Score=318.66 Aligned_cols=184 Identities=27% Similarity=0.420 Sum_probs=151.2
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCc---ccccceeEEEccCCCCCCCCCHHHHHHHHHHccCCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLES---KLLKIISAYVMQDDLLFPMLTVEETLMFAAEFRLPRS 77 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~---~~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~~~~ 77 (592)
++|+||||||||||+++|+|..+|. +|+|.+||.++.. ...++.++||+|++.+++. |++||+.++. + .
T Consensus 364 ~~ivG~sGsGKSTL~~ll~g~~~~~--~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~-ti~~Ni~~~~----~-~ 435 (585)
T TIGR01192 364 VAIVGPTGAGKTTLINLLQRVYDPT--VGQILIDGIDINTVTRESLRKSIATVFQDAGLFNR-SIRENIRLGR----E-G 435 (585)
T ss_pred EEEECCCCCCHHHHHHHHccCCCCC--CCEEEECCEEhhhCCHHHHHhheEEEccCCccCcc-cHHHHHhcCC----C-C
Confidence 5899999999999999999998754 5999999998754 3467789999999998874 9999998742 1 2
Q ss_pred CCHHHHHHHHHHHHHHcCC-------cccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHH
Q 048028 78 VTKTKKQERVEALINQLGL-------RSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMV 150 (592)
Q Consensus 78 ~~~~~~~~~v~~~l~~lgL-------~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i 150 (592)
.++++ +.+.++..++ .+..||.+|+ ....||||||||++|||+|+++|++|+|||||+|||+.++..+
T Consensus 436 ~~~~~----~~~a~~~~~~~~~i~~l~~g~~t~~~~-~~~~LSgGq~qrl~lARall~~p~ililDEpts~LD~~~~~~i 510 (585)
T TIGR01192 436 ATDEE----VYEAAKAAAAHDFILKRSNGYDTLVGE-RGNRLSGGERQRLAIARAILKNAPILVLDEATSALDVETEARV 510 (585)
T ss_pred CCHHH----HHHHHHHhCcHHHHHhccccccchhcC-CCCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHH
Confidence 23332 2333333333 3344666764 4678999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCEEEEEecCChhHHHhhhceEEEecCCeEeeecChhhHH
Q 048028 151 VNVLQRIAKSGSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNETPSNLA 200 (592)
Q Consensus 151 ~~~l~~la~~g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~~~~~ 200 (592)
.+.|+++. +++|+|+++|+++ .+ +.+|++++|++|+++..|+.+++.
T Consensus 511 ~~~l~~~~-~~~tvI~isH~~~-~~-~~~d~i~~l~~G~i~~~g~~~~l~ 557 (585)
T TIGR01192 511 KNAIDALR-KNRTTFIIAHRLS-TV-RNADLVLFLDQGRLIEKGSFQELI 557 (585)
T ss_pred HHHHHHHh-CCCEEEEEEcChH-HH-HcCCEEEEEECCEEEEECCHHHHH
Confidence 99999884 5899999999996 34 679999999999999999988764
No 300
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=100.00 E-value=2.1e-33 Score=277.99 Aligned_cols=173 Identities=25% Similarity=0.424 Sum_probs=137.2
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCcc-------cccceeEEEccCCCCCCCCCHHHHHHHHHHcc
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLESK-------LLKIISAYVMQDDLLFPMLTVEETLMFAAEFR 73 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~~-------~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~ 73 (592)
++|+|||||||||||++|+|+.++. +|+|.++|+++... ..++.++|++|++.++ ..|++||+.+...
T Consensus 30 ~~i~G~nGsGKSTLl~~i~G~~~~~--~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~-~~t~~~nl~~~~~-- 104 (218)
T cd03290 30 TMIVGQVGCGKSSLLLAILGEMQTL--EGKVHWSNKNESEPSFEATRSRNRYSVAYAAQKPWLL-NATVEENITFGSP-- 104 (218)
T ss_pred EEEECCCCCCHHHHHHHHhccCCCC--CCeEEECCcccccccccccchhhcceEEEEcCCCccc-cccHHHHHhhcCc--
Confidence 4899999999999999999998754 59999999876431 2345689999999887 5799999976421
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCccccc-------ccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHH
Q 048028 74 LPRSVTKTKKQERVEALINQLGLRSAAK-------TFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTS 146 (592)
Q Consensus 74 ~~~~~~~~~~~~~v~~~l~~lgL~~~~~-------~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~ 146 (592)
... ++..++++.+++.+..+ +.. +..+..|||||||||+||++|+.+|+++||||||+|||+.+
T Consensus 105 ----~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~ 175 (218)
T cd03290 105 ----FNK----QRYKAVTDACSLQPDIDLLPFGDQTEI-GERGINLSGGQRQRICVARALYQNTNIVFLDDPFSALDIHL 175 (218)
T ss_pred ----CCH----HHHHHHHHHhCcHHHHHhCcCccccCc-ccCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCccccCHHH
Confidence 111 22345566666654322 112 23467899999999999999999999999999999999999
Q ss_pred HHHHHH--HHHHHHHcCCEEEEEecCChhHHHhhhceEEEecCCe
Q 048028 147 AFMVVN--VLQRIAKSGSIVIMSIHQPSYRILSLLDRLIILSHGQ 189 (592)
Q Consensus 147 ~~~i~~--~l~~la~~g~tvi~~~H~~~~~i~~~~D~v~ll~~G~ 189 (592)
+..+++ +++.+.++|.|+|+++|+++ .+ ..+|++++|++|+
T Consensus 176 ~~~l~~~~ll~~~~~~~~tii~~sH~~~-~~-~~~d~i~~l~~G~ 218 (218)
T cd03290 176 SDHLMQEGILKFLQDDKRTLVLVTHKLQ-YL-PHADWIIAMKDGS 218 (218)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEEeCChH-HH-hhCCEEEEecCCC
Confidence 999998 67777667899999999997 45 5799999999874
No 301
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=100.00 E-value=8e-34 Score=272.76 Aligned_cols=149 Identities=38% Similarity=0.582 Sum_probs=127.8
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCcc---cccceeEEEccCCCCCCCCCHHHHHHHHHHccCCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLESK---LLKIISAYVMQDDLLFPMLTVEETLMFAAEFRLPRS 77 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~~---~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~~~~ 77 (592)
++|+||||||||||+++|+|+.++ .+|+|.++|+++... ..++.++|++|
T Consensus 28 ~~l~G~nGsGKStLl~~i~G~~~~--~~G~v~~~g~~~~~~~~~~~~~~i~~~~q------------------------- 80 (180)
T cd03214 28 VGILGPNGAGKSTLLKTLAGLLKP--SSGEILLDGKDLASLSPKELARKIAYVPQ------------------------- 80 (180)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEECCcCCHHHHHHHHhHHHH-------------------------
Confidence 489999999999999999999875 469999999987531 23345677777
Q ss_pred CCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 048028 78 VTKTKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVNVLQRI 157 (592)
Q Consensus 78 ~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~l 157 (592)
+++.+|+.+..++. ++.||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++
T Consensus 81 ------------~l~~~gl~~~~~~~-----~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~ 143 (180)
T cd03214 81 ------------ALELLGLAHLADRP-----FNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRL 143 (180)
T ss_pred ------------HHHHcCCHhHhcCC-----cccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHH
Confidence 56667777655544 3569999999999999999999999999999999999999999999999
Q ss_pred HHc-CCEEEEEecCChhHHHhhhceEEEecCCeEeeec
Q 048028 158 AKS-GSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNE 194 (592)
Q Consensus 158 a~~-g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g 194 (592)
+++ +.|+|+++|+++ ++.+++|++++|++|++++.|
T Consensus 144 ~~~~~~tiii~sh~~~-~~~~~~d~~~~l~~g~i~~~~ 180 (180)
T cd03214 144 ARERGKTVVMVLHDLN-LAARYADRVILLKDGRIVAQG 180 (180)
T ss_pred HHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEecC
Confidence 876 899999999997 578999999999999988654
No 302
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.8e-33 Score=265.39 Aligned_cols=202 Identities=27% Similarity=0.386 Sum_probs=174.7
Q ss_pred EEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCc----ccccceeEEEccCCCCCCCCCHHHHHHHHHHccCCCC
Q 048028 2 AILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLES----KLLKIISAYVMQDDLLFPMLTVEETLMFAAEFRLPRS 77 (592)
Q Consensus 2 aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~----~~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~~~~ 77 (592)
+||||||||||||.++|+|.-....++|+|.++|+++.. .+.|.-+...+|.|.=+|..|+.+.|..+...+....
T Consensus 34 aiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~l~~~ERAr~GifLafQ~P~ei~GV~~~~fLr~a~n~~~~~~ 113 (251)
T COG0396 34 AIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPDERARAGIFLAFQYPVEIPGVTNSDFLRAAMNARRGAR 113 (251)
T ss_pred EEECCCCCCHHHHHHHHhCCCCceEecceEEECCcccccCCHhHHHhcCCEEeecCCccCCCeeHHHHHHHHHHhhhccc
Confidence 799999999999999999996555678999999999864 3345567789999999999999999998776543211
Q ss_pred CCHHHHHHHHHHHHHHcCCcc-cccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHH
Q 048028 78 VTKTKKQERVEALINQLGLRS-AAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVNVLQR 156 (592)
Q Consensus 78 ~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~ 156 (592)
-...+..+++++.++.+++++ .+++.+.. |+|||||||.-|+..++.+|++.+||||-||||..+-+.+.+.+++
T Consensus 114 ~~~~~~~~~~~e~~~~l~~~~~~l~R~vN~----GFSGGEkKR~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~ 189 (251)
T COG0396 114 GILPEFIKELKEKAELLGLDEEFLERYVNE----GFSGGEKKRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINA 189 (251)
T ss_pred cccHHHHHHHHHHHHHcCCCHHHhhcccCC----CcCcchHHHHHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHH
Confidence 113456778999999999986 66666654 8999999999999999999999999999999999999999999999
Q ss_pred HHHcCCEEEEEecCChhHHHhhh--ceEEEecCCeEeeecChhhHHHHHHHcCCCC
Q 048028 157 IAKSGSIVIMSIHQPSYRILSLL--DRLIILSHGQSVYNETPSNLAQFFAEFGHPV 210 (592)
Q Consensus 157 la~~g~tvi~~~H~~~~~i~~~~--D~v~ll~~G~~v~~g~~~~~~~~f~~~g~~~ 210 (592)
++.+|.+++++||.. ++.++. |+|.+|.+|+|+..|.+ ++.+++++.|+.|
T Consensus 190 lr~~~~~~liITHy~--rll~~i~pD~vhvl~~GrIv~sG~~-el~~~le~~gy~~ 242 (251)
T COG0396 190 LREEGRGVLIITHYQ--RLLDYIKPDKVHVLYDGRIVKSGDP-ELAEELEEKGYDW 242 (251)
T ss_pred HhcCCCeEEEEecHH--HHHhhcCCCEEEEEECCEEEecCCH-HHHHHHHHhchHH
Confidence 999999999999996 477777 99999999999999999 8999999888754
No 303
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=100.00 E-value=8e-34 Score=297.21 Aligned_cols=191 Identities=30% Similarity=0.468 Sum_probs=163.7
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCc---ccccceeEEEccCCCCCCCCCHHHHHHHHHHccCCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLES---KLLKIISAYVMQDDLLFPMLTVEETLMFAAEFRLPRS 77 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~---~~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~~~~ 77 (592)
+||+||||||||||.|+|.|..+| .+|.|.+||.+++. +.+-+.+||.||+-.||+. ||.||+. ++. .+
T Consensus 365 lgIIGPSgSGKSTLaR~lvG~w~p--~~G~VRLDga~l~qWd~e~lG~hiGYLPQdVeLF~G-TIaeNIa---Rf~--~~ 436 (580)
T COG4618 365 LGIIGPSGSGKSTLARLLVGIWPP--TSGSVRLDGADLRQWDREQLGRHIGYLPQDVELFDG-TIAENIA---RFG--EE 436 (580)
T ss_pred EEEECCCCccHHHHHHHHHccccc--CCCcEEecchhhhcCCHHHhccccCcCcccceecCC-cHHHHHH---hcc--cc
Confidence 589999999999999999999875 45999999998764 4566889999999999998 9999984 322 12
Q ss_pred CCHHH-----HHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHH
Q 048028 78 VTKTK-----KQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVN 152 (592)
Q Consensus 78 ~~~~~-----~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~ 152 (592)
.+.++ +.+.|++++ +.+.+-.||.||+ ....||||||||+++||||-.+|.+++||||-|+||......+.+
T Consensus 437 ~d~~kIieAA~lAgvHelI--l~lP~GYdT~iG~-~G~~LSgGQRQRIaLARAlYG~P~lvVLDEPNsNLD~~GE~AL~~ 513 (580)
T COG4618 437 ADPEKVIEAARLAGVHELI--LRLPQGYDTRIGE-GGATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAA 513 (580)
T ss_pred CCHHHHHHHHHHcChHHHH--HhCcCCccCccCC-CCCCCCchHHHHHHHHHHHcCCCcEEEecCCCCCcchhHHHHHHH
Confidence 22221 223455555 4567788999986 556899999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCEEEEEecCChhHHHhhhceEEEecCCeEeeecChhhHHHHHH
Q 048028 153 VLQRIAKSGSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNETPSNLAQFFA 204 (592)
Q Consensus 153 ~l~~la~~g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~~~~~~~f~ 204 (592)
.|.+++++|.|+|+++|.|+ +...+|+|++|++|++..+|+.+|+.....
T Consensus 514 Ai~~~k~rG~~vvviaHRPs--~L~~~Dkilvl~~G~~~~FG~r~eVLa~~~ 563 (580)
T COG4618 514 AILAAKARGGTVVVIAHRPS--ALASVDKILVLQDGRIAAFGPREEVLAKVL 563 (580)
T ss_pred HHHHHHHcCCEEEEEecCHH--HHhhcceeeeecCChHHhcCCHHHHHHHhc
Confidence 99999999999999999996 789999999999999999999999977654
No 304
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.4e-33 Score=308.91 Aligned_cols=188 Identities=23% Similarity=0.439 Sum_probs=152.8
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCcc----cccceeEEEccCC---CCCCCCCHHHHHHHHH--H
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLESK----LLKIISAYVMQDD---LLFPMLTVEETLMFAA--E 71 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~~----~~~~~~~yv~Q~~---~l~~~lTV~E~l~f~~--~ 71 (592)
++|+||||||||||+++|+|+.+| .+|+|.++|+++... ..++.++|++|+. .+++++|+.+|..+.. .
T Consensus 277 ~~l~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~i~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~ 354 (491)
T PRK10982 277 LGIAGLVGAKRTDIVETLFGIREK--SAGTITLHGKKINNHNANEAINHGFALVTEERRSTGIYAYLDIGFNSLISNIRN 354 (491)
T ss_pred EEEecCCCCCHHHHHHHHcCCCcC--CccEEEECCEECCCCCHHHHHHCCCEEcCCchhhCCcccCCcHHHheehhhhhh
Confidence 589999999999999999999875 459999999887532 1245589999985 4788899887743221 0
Q ss_pred ccCCCC-CCHHHHHHHHHHHHHHcCCc-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHH
Q 048028 72 FRLPRS-VTKTKKQERVEALINQLGLR-SAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFM 149 (592)
Q Consensus 72 l~~~~~-~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~ 149 (592)
...... .++.+.+++++++++.+++. +..++.+ ..|||||||||+||++++.+|+||||||||+|||+.++..
T Consensus 355 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgGq~qrv~la~al~~~p~illLDEPt~gLD~~~~~~ 429 (491)
T PRK10982 355 YKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQI-----GSLSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFE 429 (491)
T ss_pred hcccccccCcHHHHHHHHHHHHhcCccCCCccccc-----ccCCcHHHHHHHHHHHHhcCCCEEEEcCCCcccChhHHHH
Confidence 100001 12334456788999999995 4455554 4699999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCEEEEEecCChhHHHhhhceEEEecCCeEeeecCh
Q 048028 150 VVNVLQRIAKSGSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNETP 196 (592)
Q Consensus 150 i~~~l~~la~~g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~ 196 (592)
+++.|++++++|.|||++||+++ ++.++|||+++|++|+++..++.
T Consensus 430 ~~~~l~~l~~~~~tvi~vsHd~~-~~~~~~d~v~~l~~g~i~~~~~~ 475 (491)
T PRK10982 430 IYQLIAELAKKDKGIIIISSEMP-ELLGITDRILVMSNGLVAGIVDT 475 (491)
T ss_pred HHHHHHHHHHCCCEEEEECCChH-HHHhhCCEEEEEECCEEEEEEcc
Confidence 99999999888999999999997 68899999999999999976654
No 305
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=100.00 E-value=4.5e-33 Score=292.13 Aligned_cols=187 Identities=29% Similarity=0.473 Sum_probs=167.1
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCcc----cccceeEEEccCCCCCCCCCHHHHHHHHHHccCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLESK----LLKIISAYVMQDDLLFPMLTVEETLMFAAEFRLPR 76 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~~----~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~~~ 76 (592)
.||+|.||||||||+++|.|.++|+ +|+|.++|+++.-. ..+..+|+|.|+..|+|++||.||+..+..-....
T Consensus 33 HaLLGENGAGKSTLm~iL~G~~~P~--~GeI~v~G~~v~~~sP~dA~~~GIGMVhQHF~Lv~~lTV~ENiiLg~e~~~~~ 110 (501)
T COG3845 33 HALLGENGAGKSTLMKILFGLYQPD--SGEIRVDGKEVRIKSPRDAIRLGIGMVHQHFMLVPTLTVAENIILGLEPSKGG 110 (501)
T ss_pred EEEeccCCCCHHHHHHHHhCcccCC--cceEEECCEEeccCCHHHHHHcCCcEEeeccccccccchhhhhhhcCcccccc
Confidence 3899999999999999999999865 59999999987532 34556899999999999999999999886533223
Q ss_pred CCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHH
Q 048028 77 SVTKTKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVNVLQR 156 (592)
Q Consensus 77 ~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~ 156 (592)
..+.++.+++++++.++.||+-..|.+|++ ||-||||||.|-++|..+|++|+|||||+-|-|....++++.|++
T Consensus 111 ~~~~~~~~~~i~~l~~~yGl~vdp~~~V~d-----LsVG~qQRVEIlKaLyr~a~iLILDEPTaVLTP~E~~~lf~~l~~ 185 (501)
T COG3845 111 LIDRRQARARIKELSERYGLPVDPDAKVAD-----LSVGEQQRVEILKALYRGARLLILDEPTAVLTPQEADELFEILRR 185 (501)
T ss_pred ccCHHHHHHHHHHHHHHhCCCCCccceeec-----CCcchhHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHH
Confidence 456677889999999999999888888876 999999999999999999999999999999999999999999999
Q ss_pred HHHcCCEEEEEecCChhHHHhhhceEEEecCCeEeeecC
Q 048028 157 IAKSGSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNET 195 (592)
Q Consensus 157 la~~g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~ 195 (592)
++++|+|||++||-.. |+.++|||+.+|.+|+++-.-+
T Consensus 186 l~~~G~tIi~ITHKL~-Ev~~iaDrvTVLR~Gkvvgt~~ 223 (501)
T COG3845 186 LAAEGKTIIFITHKLK-EVMAIADRVTVLRRGKVVGTVD 223 (501)
T ss_pred HHHCCCEEEEEeccHH-HHHHhhCeeEEEeCCeEEeeec
Confidence 9999999999999997 7999999999999999876554
No 306
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=4.2e-33 Score=271.19 Aligned_cols=165 Identities=26% Similarity=0.295 Sum_probs=138.3
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCcccccceeEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCH
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLESKLLKIISAYVMQDDLLFPMLTVEETLMFAAEFRLPRSVTK 80 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~ 80 (592)
++|+||||||||||+++|+|+.++. +|+|.++|.++.... ++.++|++|+..+++.+||+||+.+..... .
T Consensus 29 ~~l~G~nGsGKSTLl~~l~G~~~~~--~G~i~~~g~~i~~~~-~~~~~~~~~~~~~~~~~tv~~~l~~~~~~~-----~- 99 (195)
T PRK13541 29 TYIKGANGCGKSSLLRMIAGIMQPS--SGNIYYKNCNINNIA-KPYCTYIGHNLGLKLEMTVFENLKFWSEIY-----N- 99 (195)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCCC--CcEEEECCcccChhh-hhhEEeccCCcCCCccCCHHHHHHHHHHhc-----c-
Confidence 4899999999999999999998754 599999999875432 345799999988888899999998765322 0
Q ss_pred HHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc
Q 048028 81 TKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVNVLQRIAKS 160 (592)
Q Consensus 81 ~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~la~~ 160 (592)
..++++++++.+++.+..++.+ +.||||||||++||++++.+|++++|||||+|||+.++..+.+.|++.+++
T Consensus 100 --~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~~rl~la~al~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~ 172 (195)
T PRK13541 100 --SAETLYAAIHYFKLHDLLDEKC-----YSLSSGMQKIVAIARLIACQSDLWLLDEVETNLSKENRDLLNNLIVMKANS 172 (195)
T ss_pred --cHHHHHHHHHHcCCHhhhccCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhC
Confidence 2346788899999987766554 469999999999999999999999999999999999999999999987777
Q ss_pred CCEEEEEecCChhHHHhhhceEE
Q 048028 161 GSIVIMSIHQPSYRILSLLDRLI 183 (592)
Q Consensus 161 g~tvi~~~H~~~~~i~~~~D~v~ 183 (592)
|+|+|+++|+++. .+.+|-+.
T Consensus 173 ~~tiii~sh~~~~--i~~~~~~~ 193 (195)
T PRK13541 173 GGIVLLSSHLESS--IKSAQILQ 193 (195)
T ss_pred CCEEEEEeCCccc--cchhheec
Confidence 8999999999872 34466553
No 307
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=4.4e-33 Score=272.85 Aligned_cols=163 Identities=29% Similarity=0.507 Sum_probs=129.8
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCcccccceeEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCH
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLESKLLKIISAYVMQDDLLFPMLTVEETLMFAAEFRLPRSVTK 80 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~ 80 (592)
++|+||||||||||+++|+|+.++ .+|+|.++| .++|++|++.+++ .|++||+.+... ...
T Consensus 34 ~~i~G~nG~GKSTLl~~i~G~~~~--~~G~i~~~g----------~i~~~~q~~~l~~-~t~~enl~~~~~------~~~ 94 (204)
T cd03250 34 VAIVGPVGSGKSSLLSALLGELEK--LSGSVSVPG----------SIAYVSQEPWIQN-GTIRENILFGKP------FDE 94 (204)
T ss_pred EEEECCCCCCHHHHHHHHhCcCCC--CCCeEEEcC----------EEEEEecCchhcc-CcHHHHhccCCC------cCH
Confidence 489999999999999999999875 459999998 4899999998885 699999987422 111
Q ss_pred HHHHHHHHHHHHHcCCcccc-------cccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHH-
Q 048028 81 TKKQERVEALINQLGLRSAA-------KTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVN- 152 (592)
Q Consensus 81 ~~~~~~v~~~l~~lgL~~~~-------~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~- 152 (592)
++..+.++.+++.+.. ++.+ +...+.||||||||++||++|+.+|++++|||||+|||+.++..+.+
T Consensus 95 ----~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~lS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~ 169 (204)
T cd03250 95 ----ERYEKVIKACALEPDLEILPDGDLTEI-GEKGINLSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFEN 169 (204)
T ss_pred ----HHHHHHHHHcCcHHHHHhccCccccee-cCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHH
Confidence 1223334444433221 2222 23467899999999999999999999999999999999999999998
Q ss_pred HHHHHHHcCCEEEEEecCChhHHHhhhceEEEecCCe
Q 048028 153 VLQRIAKSGSIVIMSIHQPSYRILSLLDRLIILSHGQ 189 (592)
Q Consensus 153 ~l~~la~~g~tvi~~~H~~~~~i~~~~D~v~ll~~G~ 189 (592)
++++++++|+|||+++|+++ .+.. +|++++|++|+
T Consensus 170 ll~~~~~~~~tvi~~sh~~~-~~~~-~d~i~~l~~G~ 204 (204)
T cd03250 170 CILGLLLNNKTRILVTHQLQ-LLPH-ADQIVVLDNGR 204 (204)
T ss_pred HHHHhccCCCEEEEEeCCHH-HHhh-CCEEEEEeCCC
Confidence 56777667899999999987 4655 99999999985
No 308
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=100.00 E-value=1.1e-33 Score=343.54 Aligned_cols=187 Identities=27% Similarity=0.444 Sum_probs=157.8
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCC----------------------------------------------------Cce
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKE----------------------------------------------------SLQ 28 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~----------------------------------------------------~~~ 28 (592)
+||+||||||||||+++|.|+++|. +.+
T Consensus 1197 vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1276 (1466)
T PTZ00265 1197 TAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNS 1276 (1466)
T ss_pred EEEECCCCCCHHHHHHHHHHhCCCccccccccccccccccccccccccccccccccccccccccccccccccccccCCCC
Confidence 5899999999999999999999862 147
Q ss_pred eEEEECCEecCc---ccccceeEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcC-------Ccc
Q 048028 29 GAVTLNGEVLES---KLLKIISAYVMQDDLLFPMLTVEETLMFAAEFRLPRSVTKTKKQERVEALINQLG-------LRS 98 (592)
Q Consensus 29 G~I~i~g~~~~~---~~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lg-------L~~ 98 (592)
|+|.+||+++.. ..+|+.++||+|++.+|+. |++|||.++. + ..+++ .++++++..+ |.+
T Consensus 1277 G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF~g-TIreNI~~g~----~-~at~e----eI~~A~k~A~l~~fI~~LP~ 1346 (1466)
T PTZ00265 1277 GKILLDGVDICDYNLKDLRNLFSIVSQEPMLFNM-SIYENIKFGK----E-DATRE----DVKRACKFAAIDEFIESLPN 1346 (1466)
T ss_pred CeEEECCEEHHhCCHHHHHhhccEeCCCCccccc-cHHHHHhcCC----C-CCCHH----HHHHHHHHcCCHHHHHhCcc
Confidence 999999999854 4678889999999999975 9999999862 1 22332 3445555444 445
Q ss_pred cccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH-HcCCEEEEEecCChhHHHh
Q 048028 99 AAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVNVLQRIA-KSGSIVIMSIHQPSYRILS 177 (592)
Q Consensus 99 ~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~la-~~g~tvi~~~H~~~~~i~~ 177 (592)
-.||.||+ ....||||||||++|||||+++|+||+||||||+||+.+.+.|.+.|+++. .+++|+|+++|+++ ..+
T Consensus 1347 GydT~VGe-~G~~LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD~~sE~~I~~~L~~~~~~~~~TvIiIaHRls--ti~ 1423 (1466)
T PTZ00265 1347 KYDTNVGP-YGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTIITIAHRIA--SIK 1423 (1466)
T ss_pred ccCCccCC-CCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhccCCCEEEEEechHH--HHH
Confidence 67999985 566799999999999999999999999999999999999999999999986 36899999999996 467
Q ss_pred hhceEEEecC----CeEe-eecChhhHH
Q 048028 178 LLDRLIILSH----GQSV-YNETPSNLA 200 (592)
Q Consensus 178 ~~D~v~ll~~----G~~v-~~g~~~~~~ 200 (592)
.||+|++|++ |+++ ..|+.+|+.
T Consensus 1424 ~aD~Ivvl~~~~~~G~iv~e~Gth~eLl 1451 (1466)
T PTZ00265 1424 RSDKIVVFNNPDRTGSFVQAHGTHEELL 1451 (1466)
T ss_pred hCCEEEEEeCCCCCCCEEEEecCHHHHH
Confidence 8999999999 9955 899998875
No 309
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=3.4e-33 Score=320.28 Aligned_cols=187 Identities=30% Similarity=0.480 Sum_probs=160.3
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCc---ccccceeEEEccCCCCCCCCCHHHHHHHHHHccCCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLES---KLLKIISAYVMQDDLLFPMLTVEETLMFAAEFRLPRS 77 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~---~~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~~~~ 77 (592)
+||+|||||||||.+.+|-..++|. +|.|.+||.++++ +.+|+++|.|.|+|.||.. |++||+.|+. . .
T Consensus 1019 vALVG~SGsGKSTvI~LLeRfYdp~--~G~V~IDg~dik~lnl~~LR~~i~lVsQEP~LF~~-TIrENI~YG~--~---~ 1090 (1228)
T KOG0055|consen 1019 VALVGPSGSGKSTVISLLERFYDPD--AGKVKIDGVDIKDLNLKWLRKQIGLVSQEPVLFNG-TIRENIAYGS--E---E 1090 (1228)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCC--CCeEEECCcccccCCHHHHHHhcceeccCchhhcc-cHHHHHhccC--C---C
Confidence 5899999999999999999998864 5999999999865 4578899999999999987 9999999981 1 1
Q ss_pred CCHHHHHHHH-----HHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHH
Q 048028 78 VTKTKKQERV-----EALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVN 152 (592)
Q Consensus 78 ~~~~~~~~~v-----~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~ 152 (592)
.+.++..+.. .+.+ .+|.+-.||.||+ +..+||||||||++||||+++||+||||||.||+||+++.+.+.+
T Consensus 1091 vs~~eIi~Aak~ANaH~FI--~sLP~GyDT~vGe-rG~QLSGGQKQRIAIARAilRnPkILLLDEATSALDseSErvVQe 1167 (1228)
T KOG0055|consen 1091 VSEEEIIEAAKLANAHNFI--SSLPQGYDTRVGE-RGVQLSGGQKQRIAIARAILRNPKILLLDEATSALDSESERVVQE 1167 (1228)
T ss_pred CCHHHHHHHHHHhhhHHHH--hcCcCcccCccCc-ccCcCCchHHHHHHHHHHHHcCCCeeeeeccchhhhhhhHHHHHH
Confidence 3444332221 1222 3788889999996 455799999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCEEEEEecCChhHHHhhhceEEEecCCeEeeecChhhHHH
Q 048028 153 VLQRIAKSGSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNETPSNLAQ 201 (592)
Q Consensus 153 ~l~~la~~g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~~~~~~ 201 (592)
.|++.. .|+|.|++.|.++ ..+-+|.|.++++|++++.|+.+++.+
T Consensus 1168 ALd~a~-~gRT~IvIAHRLS--TIqnaD~I~Vi~~G~VvE~GtH~~L~~ 1213 (1228)
T KOG0055|consen 1168 ALDRAM-EGRTTIVIAHRLS--TIQNADVIAVLKNGKVVEQGTHDELLA 1213 (1228)
T ss_pred HHHHhh-cCCcEEEEecchh--hhhcCCEEEEEECCEEEecccHHHHHh
Confidence 999975 5899999999997 467899999999999999999999865
No 310
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=6.3e-33 Score=264.30 Aligned_cols=138 Identities=38% Similarity=0.645 Sum_probs=123.1
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCc---ccccceeEEEccCCCCCCCCCHHHHHHHHHHccCCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLES---KLLKIISAYVMQDDLLFPMLTVEETLMFAAEFRLPRS 77 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~---~~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~~~~ 77 (592)
++|+||||||||||+++|+|+.++. +|+|.++|+++.. ...++.++|++|++.+++ .|+.||+
T Consensus 31 ~~l~G~nGsGKstLl~~i~G~~~~~--~G~i~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~-~t~~e~l----------- 96 (171)
T cd03228 31 VAIVGPSGSGKSTLLKLLLRLYDPT--SGEILIDGVDLRDLDLESLRKNIAYVPQDPFLFS-GTIRENI----------- 96 (171)
T ss_pred EEEECCCCCCHHHHHHHHHcCCCCC--CCEEEECCEEhhhcCHHHHHhhEEEEcCCchhcc-chHHHHh-----------
Confidence 4899999999999999999998754 5999999998753 234567899999998776 5998886
Q ss_pred CCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 048028 78 VTKTKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVNVLQRI 157 (592)
Q Consensus 78 ~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~l 157 (592)
|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++
T Consensus 97 ----------------------------------LS~G~~~rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~ 142 (171)
T cd03228 97 ----------------------------------LSGGQRQRIAIARALLRDPPILILDEATSALDPETEALILEALRAL 142 (171)
T ss_pred ----------------------------------hCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999
Q ss_pred HHcCCEEEEEecCChhHHHhhhceEEEecCCe
Q 048028 158 AKSGSIVIMSIHQPSYRILSLLDRLIILSHGQ 189 (592)
Q Consensus 158 a~~g~tvi~~~H~~~~~i~~~~D~v~ll~~G~ 189 (592)
.+ ++|+|+++|++. ++.. ||++++|++|+
T Consensus 143 ~~-~~tii~~sh~~~-~~~~-~d~~~~l~~g~ 171 (171)
T cd03228 143 AK-GKTVIVIAHRLS-TIRD-ADRIIVLDDGR 171 (171)
T ss_pred cC-CCEEEEEecCHH-HHHh-CCEEEEEcCCC
Confidence 64 799999999997 4665 99999999885
No 311
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=100.00 E-value=2.2e-32 Score=280.24 Aligned_cols=173 Identities=25% Similarity=0.444 Sum_probs=138.1
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCcccccceeEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCH
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLESKLLKIISAYVMQDDLLFPMLTVEETLMFAAEFRLPRSVTK 80 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~ 80 (592)
++|+||||||||||+++|+|++++. +|+|.++| .++|++|++.+++. ||+||+.+.... ..
T Consensus 66 ~~liG~NGsGKSTLl~~I~Gl~~p~--~G~I~i~g----------~i~yv~q~~~l~~~-tv~enl~~~~~~------~~ 126 (282)
T cd03291 66 LAITGSTGSGKTSLLMLILGELEPS--EGKIKHSG----------RISFSSQFSWIMPG-TIKENIIFGVSY------DE 126 (282)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCCC--CcEEEECC----------EEEEEeCccccccc-CHHHHhhccccc------CH
Confidence 5899999999999999999998754 59999988 27999999988875 999999864211 11
Q ss_pred HHHHHHHHHHHHHcCCcccc-------cccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHH
Q 048028 81 TKKQERVEALINQLGLRSAA-------KTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVNV 153 (592)
Q Consensus 81 ~~~~~~v~~~l~~lgL~~~~-------~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~ 153 (592)
.++.+.++.+++.+.. ++.++ ..++.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.
T Consensus 127 ----~~~~~~l~~~~l~~~l~~~~~~~~~~~~-~~~~~LSgGq~qrv~lAraL~~~p~iLiLDEPt~gLD~~~~~~l~~~ 201 (282)
T cd03291 127 ----YRYKSVVKACQLEEDITKFPEKDNTVLG-EGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFES 201 (282)
T ss_pred ----HHHHHHHHHhCCHHHHHhccccccceec-CCCCcCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHH
Confidence 1223344444443322 22332 24568999999999999999999999999999999999999999986
Q ss_pred H-HHHHHcCCEEEEEecCChhHHHhhhceEEEecCCeEeeecChhhHH
Q 048028 154 L-QRIAKSGSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNETPSNLA 200 (592)
Q Consensus 154 l-~~la~~g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~~~~~ 200 (592)
+ ++++ ++.|||+++|++. .+ ..+|++++|++|+++..|+++++.
T Consensus 202 ll~~~~-~~~tIiiisH~~~-~~-~~~d~i~~l~~G~i~~~g~~~~~~ 246 (282)
T cd03291 202 CVCKLM-ANKTRILVTSKME-HL-KKADKILILHEGSSYFYGTFSELQ 246 (282)
T ss_pred HHHHhh-CCCEEEEEeCChH-HH-HhCCEEEEEECCEEEEECCHHHHH
Confidence 5 5554 5789999999987 34 689999999999999999988763
No 312
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=5.3e-33 Score=271.31 Aligned_cols=193 Identities=29% Similarity=0.413 Sum_probs=165.9
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCc--ccccceeEEEc-cCCCCCCCCCHHHHHHHHHHccCCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLES--KLLKIISAYVM-QDDLLFPMLTVEETLMFAAEFRLPRS 77 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~--~~~~~~~~yv~-Q~~~l~~~lTV~E~l~f~~~l~~~~~ 77 (592)
++.+|||||||||+||+|+|++.|. +|.|.++|...-+ +.+-+.+++|+ |.-.+.-.+.+.|.+....... .
T Consensus 53 vgflGaNGAGKSTtLKmLTGll~p~--~G~v~V~G~~Pf~~~~~~~~~~~~v~gqk~ql~Wdlp~~ds~~v~~~Iy---~ 127 (325)
T COG4586 53 VGFLGANGAGKSTTLKMLTGLLLPT--SGKVRVNGKDPFRRREEYLRSIGLVMGQKLQLWWDLPALDSLEVLKLIY---E 127 (325)
T ss_pred EEEEcCCCCcchhhHHHHhCccccC--CCeEEecCcCcchhHHHHHHHHHHHhhhhheeeeechhhhhHHHHHHHH---h
Confidence 4789999999999999999999865 5999999987532 23334566654 5556666677888887654443 5
Q ss_pred CCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 048028 78 VTKTKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVNVLQRI 157 (592)
Q Consensus 78 ~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~l 157 (592)
.+.++-+++.+.+.+.|+|+...+.++ |.||-|||.|+.||.+|+++|+||||||||-|||..++..+.+.|++.
T Consensus 128 Ipd~~F~~r~~~l~eiLdl~~~lk~~v-----r~LSlGqRmraeLaaaLLh~p~VLfLDEpTvgLDV~aq~~ir~Flke~ 202 (325)
T COG4586 128 IPDDEFAERLDFLTEILDLEGFLKWPV-----RKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKEY 202 (325)
T ss_pred CCHHHHHHHHHHHHHHhcchhhhhhhh-----hhccchHHHHHHHHHHhcCCCcEEEecCCccCcchhHHHHHHHHHHHH
Confidence 778888999999999999998876554 679999999999999999999999999999999999999999999999
Q ss_pred HH-cCCEEEEEecCChhHHHhhhceEEEecCCeEeeecChhhHHHHHH
Q 048028 158 AK-SGSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNETPSNLAQFFA 204 (592)
Q Consensus 158 a~-~g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~~~~~~~f~ 204 (592)
.+ ++.||+.+||+.+ ++..+||||++|+.|+++|+|+.+++.+-|.
T Consensus 203 n~~~~aTVllTTH~~~-di~~lc~rv~~I~~Gqlv~dg~l~~l~~~f~ 249 (325)
T COG4586 203 NEERQATVLLTTHIFD-DIATLCDRVLLIDQGQLVFDGTLAQLQEQFG 249 (325)
T ss_pred HHhhCceEEEEecchh-hHHHhhhheEEeeCCcEeecccHHHHHHHhC
Confidence 76 5899999999998 6999999999999999999999999987664
No 313
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=1.6e-32 Score=259.53 Aligned_cols=185 Identities=30% Similarity=0.497 Sum_probs=153.3
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCcccc---cceeEEEccCC--CCCCCCCHHHHHHHHHHccCC
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLESKLL---KIISAYVMQDD--LLFPMLTVEETLMFAAEFRLP 75 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~~~~---~~~~~yv~Q~~--~l~~~lTV~E~l~f~~~l~~~ 75 (592)
+.|+|.||||||||+|+|+|.+.++ +|+|.++|.++++... ...++-|+||+ ..+|.||+.||+..+..--..
T Consensus 35 vtViGsNGAGKSTlln~iaG~l~~t--~G~I~Idg~dVtk~~~~~RA~~larVfQdp~~gt~~~lTieENl~la~~Rg~~ 112 (263)
T COG1101 35 VTVIGSNGAGKSTLLNAIAGDLKPT--SGQILIDGVDVTKKSVAKRANLLARVFQDPLAGTAPELTIEENLALAESRGKK 112 (263)
T ss_pred EEEEcCCCccHHHHHHHhhCccccC--CceEEECceecccCCHHHHhhHHHHHhcchhhCCcccccHHHHHHHHHhcCcc
Confidence 3589999999999999999999864 5999999999986432 23456799997 579999999999987543222
Q ss_pred CCCCH---HHHHHHHHHHHHH--cCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHH
Q 048028 76 RSVTK---TKKQERVEALINQ--LGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMV 150 (592)
Q Consensus 76 ~~~~~---~~~~~~v~~~l~~--lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i 150 (592)
+.++. ..+++...+-++. +||++..++++|- |||||||-++++.|-++.|+||+|||-|++|||.++..+
T Consensus 113 rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~igl-----LSGGQRQalsL~MAtl~~pkiLLLDEHTAALDPkta~~v 187 (263)
T COG1101 113 RGLSSALNERRRSSFRERLARLGLGLENRLSDRIGL-----LSGGQRQALSLLMATLHPPKILLLDEHTAALDPKTAEFV 187 (263)
T ss_pred cccchhhhHHHHHHHHHHHhhcccchhhhhcChhhh-----ccchHHHHHHHHHHhcCCCcEEEecchhhcCCcchHHHH
Confidence 22322 2233444455555 4678888888875 999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHc-CCEEEEEecCChhHHHhhhceEEEecCCeEeee
Q 048028 151 VNVLQRIAKS-GSIVIMSIHQPSYRILSLLDRLIILSHGQSVYN 193 (592)
Q Consensus 151 ~~~l~~la~~-g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~ 193 (592)
++.-.++.++ +.|.+|+||+++ ++..+.+|+++|++|+||.+
T Consensus 188 m~lT~kiV~~~klTtlMVTHnm~-~Al~yG~RlImLh~G~IvlD 230 (263)
T COG1101 188 MELTAKIVEEHKLTTLMVTHNME-DALDYGNRLIMLHSGKIVLD 230 (263)
T ss_pred HHHHHHHHHhcCCceEEEeccHH-HHHhhCCeEEEEeCCeEEEE
Confidence 9999998765 779999999998 68999999999999999975
No 314
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=2.3e-32 Score=276.39 Aligned_cols=176 Identities=26% Similarity=0.383 Sum_probs=145.6
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEE-----------ECCEecCcc--c-cc--ceeEEEccCCCCCCCCCHHH
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVT-----------LNGEVLESK--L-LK--IISAYVMQDDLLFPMLTVEE 64 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~-----------i~g~~~~~~--~-~~--~~~~yv~Q~~~l~~~lTV~E 64 (592)
++|+||||||||||||+|+|+.++. +|+|. ++|+++... . .+ ..++|++|+..+++. ++.+
T Consensus 29 ~~IvG~nGsGKSTLlk~l~Gl~~p~--~G~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~ 105 (255)
T cd03236 29 LGLVGPNGIGKSTALKILAGKLKPN--LGKFDDPPDWDEILDEFRGSELQNYFTKLLEGDVKVIVKPQYVDLIPK-AVKG 105 (255)
T ss_pred EEEECCCCCCHHHHHHHHhCCcCCC--CceEeeccccchhhhhccCchhhhhhHHhhhcccceeeecchhccCch-HHHH
Confidence 5899999999999999999998854 59996 788876431 1 11 236899999888884 8888
Q ss_pred HHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCH
Q 048028 65 TLMFAAEFRLPRSVTKTKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDS 144 (592)
Q Consensus 65 ~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~ 144 (592)
++.+.. ...+.++++.++++.+|+++..++.+ +.||||||||++||++|+.+|++++|||||+|||+
T Consensus 106 ~i~~~l--------~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~G~~qrv~laral~~~p~illlDEPts~LD~ 172 (255)
T cd03236 106 KVGELL--------KKKDERGKLDELVDQLELRHVLDRNI-----DQLSGGELQRVAIAAALARDADFYFFDEPSSYLDI 172 (255)
T ss_pred HHHHHh--------chhHHHHHHHHHHHHcCCchhhcCCh-----hhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCH
Confidence 887642 12334567889999999987766544 46999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHcCCEEEEEecCChhHHHhhhceEEEecCCeEeeec
Q 048028 145 TSAFMVVNVLQRIAKSGSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNE 194 (592)
Q Consensus 145 ~~~~~i~~~l~~la~~g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g 194 (592)
.++..+.+.|++++++++|||+++|+++ .+.++||++++|+ |++.+.|
T Consensus 173 ~~~~~l~~~l~~l~~~~~tIIiiSHd~~-~~~~~ad~i~~l~-~~~~~~~ 220 (255)
T cd03236 173 KQRLNAARLIRELAEDDNYVLVVEHDLA-VLDYLSDYIHCLY-GEPGAYG 220 (255)
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEEEEC-CCCCcce
Confidence 9999999999999888899999999987 5778999999994 6565544
No 315
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=100.00 E-value=2.8e-32 Score=257.83 Aligned_cols=130 Identities=32% Similarity=0.504 Sum_probs=117.6
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCcc----cccceeEEEccCCCCCCCCCHHHHHHHHHHccCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLESK----LLKIISAYVMQDDLLFPMLTVEETLMFAAEFRLPR 76 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~~----~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~~~ 76 (592)
++|+|||||||||||++|+|+.++. +|+|.++|+++... ..++.++|++|
T Consensus 29 ~~l~G~nGsGKSTLl~~i~G~~~~~--~G~v~~~g~~~~~~~~~~~~~~~i~~~~q------------------------ 82 (163)
T cd03216 29 HALLGENGAGKSTLMKILSGLYKPD--SGEILVDGKEVSFASPRDARRAGIAMVYQ------------------------ 82 (163)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCCC--CeEEEECCEECCcCCHHHHHhcCeEEEEe------------------------
Confidence 4899999999999999999998754 59999999987532 23456788888
Q ss_pred CCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHH
Q 048028 77 SVTKTKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVNVLQR 156 (592)
Q Consensus 77 ~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~ 156 (592)
||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++
T Consensus 83 -----------------------------------LS~G~~qrl~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~ 127 (163)
T cd03216 83 -----------------------------------LSVGERQMVEIARALARNARLLILDEPTAALTPAEVERLFKVIRR 127 (163)
T ss_pred -----------------------------------cCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999
Q ss_pred HHHcCCEEEEEecCChhHHHhhhceEEEecCCeEee
Q 048028 157 IAKSGSIVIMSIHQPSYRILSLLDRLIILSHGQSVY 192 (592)
Q Consensus 157 la~~g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~ 192 (592)
++++|.|+|+++|++. ++.+.+|++++|++|++++
T Consensus 128 ~~~~~~tiii~sh~~~-~~~~~~d~~~~l~~g~i~~ 162 (163)
T cd03216 128 LRAQGVAVIFISHRLD-EVFEIADRVTVLRDGRVVG 162 (163)
T ss_pred HHHCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEe
Confidence 9877999999999987 5788999999999999875
No 316
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=100.00 E-value=8.5e-33 Score=267.77 Aligned_cols=186 Identities=28% Similarity=0.408 Sum_probs=158.0
Q ss_pred EEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCc----ccccceeEEEccC--CCCCCCCCHHHHHHHHH--Hcc
Q 048028 2 AILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLES----KLLKIISAYVMQD--DLLFPMLTVEETLMFAA--EFR 73 (592)
Q Consensus 2 aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~----~~~~~~~~yv~Q~--~~l~~~lTV~E~l~f~~--~l~ 73 (592)
+|+|||||||||||++++|..+|. +|.+.+.|++..+ .+.|+.+|+|.-. ..+.+..+|+|-+.-+. ..-
T Consensus 61 ~I~G~NGsGKTTLL~ll~~~~~ps--sg~~~~~G~~~G~~~~~~elrk~IG~vS~~L~~~~~~~~~v~dvVlSg~~~siG 138 (257)
T COG1119 61 AIVGPNGAGKTTLLSLLTGEHPPS--SGDVTLLGRRFGKGETIFELRKRIGLVSSELHERFRVRETVRDVVLSGFFASIG 138 (257)
T ss_pred EEECCCCCCHHHHHHHHhcccCCC--CCceeeeeeeccCCcchHHHHHHhCccCHHHHhhcccccccceeeeeccccccc
Confidence 799999999999999999998764 6999999998643 4568889999764 45666778888775332 222
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHH
Q 048028 74 LPRSVTKTKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVNV 153 (592)
Q Consensus 74 ~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~ 153 (592)
.......++..+++..+++.+|+.+.+|...+. ||-||||||.|||||+++|++||||||++|||...++.+.+.
T Consensus 139 ~y~~~~~~~~~~~a~~lle~~g~~~la~r~~~~-----LS~Ge~rrvLiaRALv~~P~LLiLDEP~~GLDl~~re~ll~~ 213 (257)
T COG1119 139 IYQEDLTAEDLAAAQWLLELLGAKHLADRPFGS-----LSQGEQRRVLIARALVKDPELLILDEPAQGLDLIAREQLLNR 213 (257)
T ss_pred ccccCCCHHHHHHHHHHHHHcchhhhccCchhh-----cCHhHHHHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHH
Confidence 222234456778899999999999988877664 999999999999999999999999999999999999999999
Q ss_pred HHHHHHc--CCEEEEEecCChhHHHhhhceEEEecCCeEeeecC
Q 048028 154 LQRIAKS--GSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNET 195 (592)
Q Consensus 154 l~~la~~--g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~ 195 (592)
|.+++.. +.++|++||+++ |+-..+++++++++|+++++|.
T Consensus 214 l~~~~~~~~~~~ll~VtHh~e-Ei~~~~th~lll~~g~v~~~g~ 256 (257)
T COG1119 214 LEELAASPGAPALLFVTHHAE-EIPPCFTHRLLLKEGEVVAQGK 256 (257)
T ss_pred HHHHhcCCCCceEEEEEcchh-hcccccceEEEeeCCceeeccc
Confidence 9999875 788999999997 7999999999999999999874
No 317
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.2e-32 Score=303.80 Aligned_cols=181 Identities=26% Similarity=0.401 Sum_probs=148.6
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCcccccceeEEEccCCCCCCCCCHHHHHHHHHH-c-------
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLESKLLKIISAYVMQDDLLFPMLTVEETLMFAAE-F------- 72 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~-l------- 72 (592)
++|+||||||||||||+|+|+.++. +|+|.++|. +.++|++|++.+++.+||+|++.++.. .
T Consensus 30 ~~liG~NGsGKSTLl~~l~Gl~~p~--~G~i~~~~~--------~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~ 99 (530)
T PRK15064 30 YGLIGANGCGKSTFMKILGGDLEPS--AGNVSLDPN--------ERLGKLRQDQFAFEEFTVLDTVIMGHTELWEVKQER 99 (530)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCCC--CceEEecCC--------CEEEEEeccCCcCCCCcHHHHHHHhhHHHHHHHHHH
Confidence 5899999999999999999998754 599999873 348999999999999999999987521 0
Q ss_pred ----cCCCC-----------------CCHHHHHHHHHHHHHHcCCcccc-cccccCCCCCCCCHHHHHHHHHHHHHhhCC
Q 048028 73 ----RLPRS-----------------VTKTKKQERVEALINQLGLRSAA-KTFIGDERHRGVSGGERRRVSIGIHIIHDP 130 (592)
Q Consensus 73 ----~~~~~-----------------~~~~~~~~~v~~~l~~lgL~~~~-~~~vg~~~~~~LSgGerqRv~ia~~L~~~p 130 (592)
..+.. ....+.+++++++++.+||.+.. +.. +..|||||||||+||++|+.+|
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~~LSgGq~qrv~lA~aL~~~p 174 (530)
T PRK15064 100 DRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGIPEEQHYGL-----MSEVAPGWKLRVLLAQALFSNP 174 (530)
T ss_pred HHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCChhHhcCc-----hhhcCHHHHHHHHHHHHHhcCC
Confidence 00000 00012346788999999997543 233 4569999999999999999999
Q ss_pred cEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCChhHHHhhhceEEEecCCeE-eeecChhhHH
Q 048028 131 ILLFLDEPTSGLDSTSAFMVVNVLQRIAKSGSIVIMSIHQPSYRILSLLDRLIILSHGQS-VYNETPSNLA 200 (592)
Q Consensus 131 ~lllLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~-v~~g~~~~~~ 200 (592)
++|||||||+|||+.++..+.+.|++ .|.|||+++|+++ .+.++||++++|++|++ ++.|++++..
T Consensus 175 ~lLlLDEPt~~LD~~~~~~l~~~l~~---~~~tiiivsHd~~-~~~~~~d~i~~l~~g~i~~~~g~~~~~~ 241 (530)
T PRK15064 175 DILLLDEPTNNLDINTIRWLEDVLNE---RNSTMIIISHDRH-FLNSVCTHMADLDYGELRVYPGNYDEYM 241 (530)
T ss_pred CEEEEcCCCcccCHHHHHHHHHHHHh---CCCeEEEEeCCHH-HHHhhcceEEEEeCCEEEEecCCHHHHH
Confidence 99999999999999999999999864 5889999999997 58899999999999999 5889887664
No 318
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=100.00 E-value=1.3e-32 Score=321.33 Aligned_cols=193 Identities=30% Similarity=0.488 Sum_probs=177.9
Q ss_pred EEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCc----ccccceeEEEccCCCCCCCCCHHHHHHHHHHccCCCC
Q 048028 2 AILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLES----KLLKIISAYVMQDDLLFPMLTVEETLMFAAEFRLPRS 77 (592)
Q Consensus 2 aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~----~~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~~~~ 77 (592)
+++|+|||||||++|+|+|..+++ +|++.++|.++.. .+.++.+||+||+|.+.+.||.||+|.+.+++| +
T Consensus 595 gLLG~NGAGKtT~f~mltG~~~~t--~G~a~i~g~~i~~~~~~~~~~~~iGyCPQ~d~l~~~lT~rEhL~~~arlr---G 669 (885)
T KOG0059|consen 595 GLLGVNGAGKTTTFKMLTGETKPT--SGEALIKGHDITVSTDFQQVRKQLGYCPQFDALWEELTGREHLEFYARLR---G 669 (885)
T ss_pred EEecCCCCCchhhHHHHhCCccCC--cceEEEecCccccccchhhhhhhcccCCchhhhhhhccHHHHHHHHHHHc---C
Confidence 799999999999999999998854 5999999998854 236778999999999999999999999999987 4
Q ss_pred CCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 048028 78 VTKTKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVNVLQRI 157 (592)
Q Consensus 78 ~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~l 157 (592)
++..+.++.++.+++.+||.+.+|+.++. +|||+|||+++|.|++.+|++++|||||+|+||.+++.+.++++++
T Consensus 670 ~~~~di~~~v~~ll~~~~L~~~~~~~~~~-----ySgG~kRkLs~aialig~p~vi~LDEPstGmDP~arr~lW~ii~~~ 744 (885)
T KOG0059|consen 670 LPRSDIGSAIEKLLRLVGLGPYANKQVRT-----YSGGNKRRLSFAIALIGDPSVILLDEPSTGLDPKARRHLWDIIARL 744 (885)
T ss_pred CChhHHHHHHHHHHHHcCChhhhccchhh-----CCCcchhhHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHH
Confidence 56677778899999999999999988765 9999999999999999999999999999999999999999999999
Q ss_pred HHcCCEEEEEecCChhHHHhhhceEEEecCCeEeeecChhhHHHHHHH
Q 048028 158 AKSGSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNETPSNLAQFFAE 205 (592)
Q Consensus 158 a~~g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~~~~~~~f~~ 205 (592)
.++|+.||+|+|..+ |...+|||+.+|.+|++...|++++++..|..
T Consensus 745 ~k~g~aiiLTSHsMe-E~EaLCtR~aImv~G~l~ciGs~q~LKsrfG~ 791 (885)
T KOG0059|consen 745 RKNGKAIILTSHSME-EAEALCTRTAIMVIGQLRCIGSPQELKSRYGS 791 (885)
T ss_pred HhcCCEEEEEcCCHH-HHHHHhhhhheeecCeeEEecChHHHHhhcCC
Confidence 998889999999997 79999999999999999999999999987754
No 319
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=100.00 E-value=2.2e-32 Score=302.39 Aligned_cols=186 Identities=23% Similarity=0.312 Sum_probs=146.7
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCc----ccccceeEEEccCCCCCC--CCCHHHHHHHHHHc--
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLES----KLLKIISAYVMQDDLLFP--MLTVEETLMFAAEF-- 72 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~----~~~~~~~~yv~Q~~~l~~--~lTV~E~l~f~~~l-- 72 (592)
++|+||||||||||+|+|+|..++ ..+|+|.++|+++.. ...++.++|++|++.++. ..|+++++.+....
T Consensus 289 ~~i~G~NGsGKSTLl~~l~G~~~~-~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~ 367 (490)
T PRK10938 289 WQIVGPNGAGKSTLLSLITGDHPQ-GYSNDLTLFGRRRGSGETIWDIKKHIGYVSSSLHLDYRVSTSVRNVILSGFFDSI 367 (490)
T ss_pred EEEECCCCCCHHHHHHHHcCCCCc-ccCCeEEEecccCCCCCCHHHHHhhceEECHHHHhhcccCCcHHHHHHhcccccc
Confidence 489999999999999999997642 246999999986532 123456899999876544 35777776543211
Q ss_pred cCCCCCCHHHHHHHHHHHHHHcCCcc-cccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHH
Q 048028 73 RLPRSVTKTKKQERVEALINQLGLRS-AAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVV 151 (592)
Q Consensus 73 ~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~ 151 (592)
....... .+.+++++++++.+||.+ ..++.++ .|||||||||+||++|+.+|++|+|||||+|||+.++..+.
T Consensus 368 ~~~~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~-----~LSgGq~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~ 441 (490)
T PRK10938 368 GIYQAVS-DRQQKLAQQWLDILGIDKRTADAPFH-----SLSWGQQRLALIVRALVKHPTLLILDEPLQGLDPLNRQLVR 441 (490)
T ss_pred ccccCCC-HHHHHHHHHHHHHcCCchhhccCchh-----hCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHH
Confidence 1101111 233567899999999986 6666554 59999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCC-EEEEEecCChhHHHh-hhceEEEecCCeEeeec
Q 048028 152 NVLQRIAKSGS-IVIMSIHQPSYRILS-LLDRLIILSHGQSVYNE 194 (592)
Q Consensus 152 ~~l~~la~~g~-tvi~~~H~~~~~i~~-~~D~v~ll~~G~~v~~g 194 (592)
+.|+++++++. |||+++|+++ ++.+ ++|++++|++|++++.-
T Consensus 442 ~~L~~l~~~~~~tviivsHd~~-~~~~~~~d~v~~l~~G~i~~~~ 485 (490)
T PRK10938 442 RFVDVLISEGETQLLFVSHHAE-DAPACITHRLEFVPDGDIYRYV 485 (490)
T ss_pred HHHHHHHhcCCcEEEEEecchh-hhhhhhheeEEEecCCceEEee
Confidence 99999988764 6999999997 5766 58999999999987653
No 320
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=99.98 E-value=1.6e-32 Score=306.31 Aligned_cols=169 Identities=31% Similarity=0.565 Sum_probs=142.2
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCc---ccccceeEEEccCCCCCCCCCHHHHHHHHHHccCCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLES---KLLKIISAYVMQDDLLFPMLTVEETLMFAAEFRLPRS 77 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~---~~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~~~~ 77 (592)
++|+||||||||||+|+|+|+.+|. +|+|.+||.++.+ ..+++.++||+|++.+|+. |++||+.++.. .
T Consensus 351 ~~ivG~sGsGKSTL~~ll~g~~~~~--~G~I~~~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~-ti~~Ni~~~~~-----~ 422 (529)
T TIGR02857 351 VALVGPSGAGKSTLLNLLLGFVDPT--EGSIAVNGVPLADADADSWRDQIAWVPQHPFLFAG-TIAENIRLARP-----D 422 (529)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCCC--CcEEEECCEehhhCCHHHHHhheEEEcCCCcccCc-CHHHHHhccCC-----C
Confidence 5899999999999999999998864 5999999998754 4567889999999999975 99999987521 1
Q ss_pred CCHHHHHHHHHHHHHHcCCcc-------cccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHH
Q 048028 78 VTKTKKQERVEALINQLGLRS-------AAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMV 150 (592)
Q Consensus 78 ~~~~~~~~~v~~~l~~lgL~~-------~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i 150 (592)
.+ ++++++.++..++.+ -.||.+|+ ....||||||||++|||+|+++|++++||||||+||+.+.+.+
T Consensus 423 ~~----~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e-~g~~LSgGq~qri~laRal~~~~~ililDE~ts~lD~~~~~~i 497 (529)
T TIGR02857 423 AS----DAEIRRALERAGLDEFVAALPQGLDTLIGE-GGAGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEALV 497 (529)
T ss_pred CC----HHHHHHHHHHcCcHHHHHhCcccccchhcc-ccccCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHH
Confidence 22 234566666666543 35788875 5567999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCEEEEEecCChhHHHhhhceEEEe
Q 048028 151 VNVLQRIAKSGSIVIMSIHQPSYRILSLLDRLIIL 185 (592)
Q Consensus 151 ~~~l~~la~~g~tvi~~~H~~~~~i~~~~D~v~ll 185 (592)
.+.++++. +++|+|+++|+++ ..+.||++++|
T Consensus 498 ~~~l~~~~-~~~t~i~itH~~~--~~~~~d~i~~l 529 (529)
T TIGR02857 498 TEALRALA-QGRTVLLVTHRLA--LAERADRIVVL 529 (529)
T ss_pred HHHHHHhc-CCCEEEEEecCHH--HHHhCCEEEeC
Confidence 99999985 5899999999986 35789999875
No 321
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.98 E-value=7.3e-32 Score=302.22 Aligned_cols=179 Identities=25% Similarity=0.382 Sum_probs=147.1
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCcccccceeEEEccCCCCCCCCCHHHHHHHHHH-cc------
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLESKLLKIISAYVMQDDLLFPMLTVEETLMFAAE-FR------ 73 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~-l~------ 73 (592)
++|+|||||||||||++|+|.++| .+|+|.+++. ..+|||+|++.+++.+||.||+.++.. .+
T Consensus 36 ~~iiG~NGsGKSTLlk~i~G~~~p--~~G~i~~~~~--------~~i~~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~ 105 (556)
T PRK11819 36 IGVLGLNGAGKSTLLRIMAGVDKE--FEGEARPAPG--------IKVGYLPQEPQLDPEKTVRENVEEGVAEVKAALDRF 105 (556)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCC--CCceEEecCC--------CEEEEEecCCCCCCCCcHHHHHHHhhHHHHHHHHHH
Confidence 589999999999999999999875 4599999752 358999999999999999999987531 10
Q ss_pred --C--CCCCCH----------------------HHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHh
Q 048028 74 --L--PRSVTK----------------------TKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHII 127 (592)
Q Consensus 74 --~--~~~~~~----------------------~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~ 127 (592)
. ...... .+.+++++++++.+||.. .+..+ ..|||||||||+||++|+
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-~~~~~-----~~LSgGqkqrv~la~al~ 179 (556)
T PRK11819 106 NEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDALRCPP-WDAKV-----TKLSGGERRRVALCRLLL 179 (556)
T ss_pred HHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhCCCCc-ccCch-----hhcCHHHHHHHHHHHHHh
Confidence 0 000000 012456888999999953 55554 469999999999999999
Q ss_pred hCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCChhHHHhhhceEEEecCCeEe-eecChhhH
Q 048028 128 HDPILLFLDEPTSGLDSTSAFMVVNVLQRIAKSGSIVIMSIHQPSYRILSLLDRLIILSHGQSV-YNETPSNL 199 (592)
Q Consensus 128 ~~p~lllLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v-~~g~~~~~ 199 (592)
.+|++|||||||+|||+.++..+.+.|+++. .|||+++|+++ .+.+.+|++++|++|+++ +.|+.++.
T Consensus 180 ~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~~---~tviiisHd~~-~~~~~~d~i~~l~~g~i~~~~g~~~~~ 248 (556)
T PRK11819 180 EKPDMLLLDEPTNHLDAESVAWLEQFLHDYP---GTVVAVTHDRY-FLDNVAGWILELDRGRGIPWEGNYSSW 248 (556)
T ss_pred CCCCEEEEcCCCCcCChHHHHHHHHHHHhCC---CeEEEEeCCHH-HHHhhcCeEEEEeCCEEEEecCCHHHH
Confidence 9999999999999999999999999999873 59999999997 688899999999999986 88887764
No 322
>PLN03232 ABC transporter C family member; Provisional
Probab=99.98 E-value=2.8e-32 Score=333.86 Aligned_cols=183 Identities=19% Similarity=0.325 Sum_probs=155.8
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCc---ccccceeEEEccCCCCCCCCCHHHHHHHHHHccCCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLES---KLLKIISAYVMQDDLLFPMLTVEETLMFAAEFRLPRS 77 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~---~~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~~~~ 77 (592)
+||+||||||||||+++|.|++++. +|+|.+||.++.+ ..+|+.++||||++.+|+. |+||||.+.. .
T Consensus 1265 vaIVG~SGSGKSTL~~lL~rl~~p~--~G~I~IdG~di~~i~~~~lR~~i~iVpQdp~LF~g-TIr~NL~~~~------~ 1335 (1495)
T PLN03232 1265 VGVVGRTGAGKSSMLNALFRIVELE--KGRIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFSG-TVRFNIDPFS------E 1335 (1495)
T ss_pred EEEECCCCCCHHHHHHHHhCCCcCC--CceEEECCEEhhhCCHHHHHhhcEEECCCCeeeCc-cHHHHcCCCC------C
Confidence 5899999999999999999998864 5999999999864 4678889999999999987 9999996431 2
Q ss_pred CCHHHHHHHHHHHHHHcCCc-------ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHH
Q 048028 78 VTKTKKQERVEALINQLGLR-------SAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMV 150 (592)
Q Consensus 78 ~~~~~~~~~v~~~l~~lgL~-------~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i 150 (592)
.++ +++.++++..++. +..||.+|+ ....||||||||++|||||+++|+||+||||||+||+.+...|
T Consensus 1336 ~sd----eei~~al~~a~l~~~I~~lp~GLdt~v~e-~G~~LSgGQrQrlaLARALLr~~~ILILDEATSaLD~~Te~~I 1410 (1495)
T PLN03232 1336 HND----ADLWEALERAHIKDVIDRNPFGLDAEVSE-GGENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLI 1410 (1495)
T ss_pred CCH----HHHHHHHHHcCCHHHHHhCcCCCCceecC-CCCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHH
Confidence 222 3455666665553 345788875 5567999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCEEEEEecCChhHHHhhhceEEEecCCeEeeecChhhHH
Q 048028 151 VNVLQRIAKSGSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNETPSNLA 200 (592)
Q Consensus 151 ~~~l~~la~~g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~~~~~ 200 (592)
.+.|++.. +++|+|+++|.++ ....||||++|++|++++.|+++++.
T Consensus 1411 q~~L~~~~-~~~TvI~IAHRl~--ti~~~DrIlVL~~G~ivE~Gt~~eLl 1457 (1495)
T PLN03232 1411 QRTIREEF-KSCTMLVIAHRLN--TIIDCDKILVLSSGQVLEYDSPQELL 1457 (1495)
T ss_pred HHHHHHHc-CCCEEEEEeCCHH--HHHhCCEEEEEECCEEEEECCHHHHH
Confidence 99999874 4799999999996 34569999999999999999999885
No 323
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=99.98 E-value=1.1e-32 Score=256.84 Aligned_cols=190 Identities=24% Similarity=0.442 Sum_probs=164.0
Q ss_pred EEECCCCCcHHHHHHHHhCCCCCCCceeEEEECC-EecCcc----cccceeEEEccCCCCCCCCCHHHHHHHHHHccCCC
Q 048028 2 AILGASGAGKTTLMDALAGRIEKESLQGAVTLNG-EVLESK----LLKIISAYVMQDDLLFPMLTVEETLMFAAEFRLPR 76 (592)
Q Consensus 2 aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g-~~~~~~----~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~~~ 76 (592)
+|+|||||||||++++|+|..+|. +|+|.++| .+++.. ..+..+|--+|.+..|+.+||+|||+.+.+...+.
T Consensus 35 ~lIGpNGAGKTT~mD~ItGKtrp~--~G~v~f~g~~dl~~~~e~~IAr~GIGRKFQ~PtVfe~ltV~eNLelA~~~~k~v 112 (249)
T COG4674 35 VLIGPNGAGKTTLMDVITGKTRPQ--EGEVLFDGDTDLTKLPEHRIARAGIGRKFQKPTVFENLTVRENLELALNRDKSV 112 (249)
T ss_pred EEECCCCCCceeeeeeecccCCCC--cceEEEcCchhhccCCHHHHHHhccCccccCCeehhhccHHHHHHHHhcCCcch
Confidence 689999999999999999998754 59999999 677542 23455788999999999999999999886533210
Q ss_pred -----CCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHH
Q 048028 77 -----SVTKTKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVV 151 (592)
Q Consensus 77 -----~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~ 151 (592)
.....+.+++++++|...||.+.+|...+. ||-||||++.|++-++.+|++|+||||++|+--....+.-
T Consensus 113 ~a~L~~r~~~~e~~ride~La~igL~~~~~~~A~~-----LSHGqKQwLEIGMll~Q~P~lLLlDEPvAGMTd~Et~~ta 187 (249)
T COG4674 113 FASLFARLRAEERRRIDELLATIGLGDERDRLAAL-----LSHGQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTA 187 (249)
T ss_pred HHHhhhhcChhHHHHHHHHHHHcccchhhhhhhhh-----hccchhhhhhhheeeccCCcEEEecCccCCCcHHHHHHHH
Confidence 112334567899999999999998877665 9999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCEEEEEecCChhHHHhhhceEEEecCCeEeeecChhhHH
Q 048028 152 NVLQRIAKSGSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNETPSNLA 200 (592)
Q Consensus 152 ~~l~~la~~g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~~~~~ 200 (592)
++|++++. +.+|+++.||+. -+.+++|+|.+|++|.+...|+.+++.
T Consensus 188 eLl~~la~-~hsilVVEHDM~-Fvr~~A~~VTVlh~G~VL~EGsld~v~ 234 (249)
T COG4674 188 ELLKSLAG-KHSILVVEHDMG-FVREIADKVTVLHEGSVLAEGSLDEVQ 234 (249)
T ss_pred HHHHHHhc-CceEEEEeccHH-HHHHhhheeEEEeccceeecccHHHhh
Confidence 99999986 579999999998 489999999999999999999998873
No 324
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=99.98 E-value=1.4e-32 Score=306.72 Aligned_cols=157 Identities=35% Similarity=0.534 Sum_probs=132.7
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCc--ccccceeEEEccCCCCCCCCCHHHHHHHHHHccCCCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLES--KLLKIISAYVMQDDLLFPMLTVEETLMFAAEFRLPRSV 78 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~--~~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~~~~~ 78 (592)
+||+||||||||||+|+|+|+.+|. +|+|.+||.++++ ..+|+.++||+|++.+|+. |++||+.++. + ..
T Consensus 364 vaIvG~SGsGKSTLl~lL~g~~~p~--~G~I~i~g~~i~~~~~~lr~~i~~V~Q~~~lF~~-TI~eNI~~g~----~-~~ 435 (529)
T TIGR02868 364 VAILGPSGSGKSTLLMLLTGLLDPL--QGEVTLDGVSVSSLQDELRRRISVFAQDAHLFDT-TVRDNLRLGR----P-DA 435 (529)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCCC--CcEEEECCEEhhhHHHHHHhheEEEccCcccccc-cHHHHHhccC----C-CC
Confidence 5899999999999999999998864 5999999988763 4567789999999999987 9999998752 1 12
Q ss_pred CHHHHHHHHHHHHHHcCCc-------ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHH
Q 048028 79 TKTKKQERVEALINQLGLR-------SAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVV 151 (592)
Q Consensus 79 ~~~~~~~~v~~~l~~lgL~-------~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~ 151 (592)
+ +++++++++..+++ +-.||.+|+ ....||||||||++|||||+++|++|+||||||+||+.+...+.
T Consensus 436 ~----~e~i~~al~~a~l~~~i~~lp~GldT~ige-~G~~LSGGQrQRiaiARall~~~~iliLDE~TSaLD~~te~~I~ 510 (529)
T TIGR02868 436 T----DEELWAALERVGLADWLRSLPDGLDTVLGE-GGARLSGGERQRLALARALLADAPILLLDEPTEHLDAGTESELL 510 (529)
T ss_pred C----HHHHHHHHHHcCCHHHHHhCcccccchhcc-ccCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHH
Confidence 2 24466666666654 446899986 45679999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCEEEEEecCC
Q 048028 152 NVLQRIAKSGSIVIMSIHQP 171 (592)
Q Consensus 152 ~~l~~la~~g~tvi~~~H~~ 171 (592)
+.|+++. +++|+|+++|++
T Consensus 511 ~~l~~~~-~~~TvIiItHrl 529 (529)
T TIGR02868 511 EDLLAAL-SGKTVVVITHHL 529 (529)
T ss_pred HHHHHhc-CCCEEEEEecCC
Confidence 9999874 479999999985
No 325
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.98 E-value=6.8e-32 Score=301.14 Aligned_cols=173 Identities=26% Similarity=0.382 Sum_probs=145.8
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCcccccceeEEEccCCC--CCCCCCHHHHHHHHHHccCCCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLESKLLKIISAYVMQDDL--LFPMLTVEETLMFAAEFRLPRSV 78 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~~~~~~~~~yv~Q~~~--l~~~lTV~E~l~f~~~l~~~~~~ 78 (592)
++|+||||||||||||+|+|+.+|. +|+|.++|. +.+||++|+.. +++.+||+|++.+.. ..
T Consensus 348 ~~l~G~NGsGKSTLl~~i~G~~~p~--~G~i~~~~~--------~~i~~~~q~~~~~~~~~~t~~~~~~~~~---~~--- 411 (530)
T PRK15064 348 LAIIGENGVGKTTLLRTLVGELEPD--SGTVKWSEN--------ANIGYYAQDHAYDFENDLTLFDWMSQWR---QE--- 411 (530)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCCC--CeEEEECCc--------eEEEEEcccccccCCCCCcHHHHHHHhc---cC---
Confidence 4899999999999999999998754 599999873 35899999863 667899999986421 01
Q ss_pred CHHHHHHHHHHHHHHcCCc-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 048028 79 TKTKKQERVEALINQLGLR-SAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVNVLQRI 157 (592)
Q Consensus 79 ~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~l 157 (592)
...+++++++++.+|+. +..++.+ ..|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++
T Consensus 412 --~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgGq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~ 484 (530)
T PRK15064 412 --GDDEQAVRGTLGRLLFSQDDIKKSV-----KVLSGGEKGRMLFGKLMMQKPNVLVMDEPTNHMDMESIESLNMALEKY 484 (530)
T ss_pred --CccHHHHHHHHHHcCCChhHhcCcc-----cccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHC
Confidence 11245688999999994 5566555 469999999999999999999999999999999999999999999987
Q ss_pred HHcCCEEEEEecCChhHHHhhhceEEEecCCeEe-eecChhhHH
Q 048028 158 AKSGSIVIMSIHQPSYRILSLLDRLIILSHGQSV-YNETPSNLA 200 (592)
Q Consensus 158 a~~g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v-~~g~~~~~~ 200 (592)
+.|||++|||++ .+.++||++++|++|+++ +.|+++++.
T Consensus 485 ---~~tvi~vsHd~~-~~~~~~d~i~~l~~g~i~~~~g~~~~~~ 524 (530)
T PRK15064 485 ---EGTLIFVSHDRE-FVSSLATRIIEITPDGVVDFSGTYEEYL 524 (530)
T ss_pred ---CCEEEEEeCCHH-HHHHhCCEEEEEECCeEEEcCCCHHHHH
Confidence 359999999997 688899999999999998 888887653
No 326
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=99.98 E-value=7.7e-32 Score=255.60 Aligned_cols=134 Identities=32% Similarity=0.480 Sum_probs=118.1
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCcccccceeEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCH
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLESKLLKIISAYVMQDDLLFPMLTVEETLMFAAEFRLPRSVTK 80 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~ 80 (592)
++|+||||||||||+++|+|+.++. +|+|.++|. +.++|++|++.++ ..||+||+.+.
T Consensus 30 ~~i~G~nGsGKSTLl~~l~G~~~~~--~G~i~~~~~--------~~i~~~~q~~~~~-~~tv~~nl~~~----------- 87 (166)
T cd03223 30 LLITGPSGTGKSSLFRALAGLWPWG--SGRIGMPEG--------EDLLFLPQRPYLP-LGTLREQLIYP----------- 87 (166)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCCC--CceEEECCC--------ceEEEECCCCccc-cccHHHHhhcc-----------
Confidence 4899999999999999999998754 599999873 4589999998765 57999998642
Q ss_pred HHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc
Q 048028 81 TKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVNVLQRIAKS 160 (592)
Q Consensus 81 ~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~la~~ 160 (592)
..+.||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++
T Consensus 88 ---------------------------~~~~LS~G~~~rv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~--- 137 (166)
T cd03223 88 ---------------------------WDDVLSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL--- 137 (166)
T ss_pred ---------------------------CCCCCCHHHHHHHHHHHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHh---
Confidence 12469999999999999999999999999999999999999999999986
Q ss_pred CCEEEEEecCChhHHHhhhceEEEecCC
Q 048028 161 GSIVIMSIHQPSYRILSLLDRLIILSHG 188 (592)
Q Consensus 161 g~tvi~~~H~~~~~i~~~~D~v~ll~~G 188 (592)
++|+|+++|+++ ....+|++++|++|
T Consensus 138 ~~tiiivsh~~~--~~~~~d~i~~l~~~ 163 (166)
T cd03223 138 GITVISVGHRPS--LWKFHDRVLDLDGE 163 (166)
T ss_pred CCEEEEEeCChh--HHhhCCEEEEEcCC
Confidence 589999999986 35799999999875
No 327
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=99.98 E-value=5.4e-32 Score=303.03 Aligned_cols=173 Identities=21% Similarity=0.318 Sum_probs=144.7
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCc---ccccceeEEEccCCCCCCCCCHHHHHHHHHHccCCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLES---KLLKIISAYVMQDDLLFPMLTVEETLMFAAEFRLPRS 77 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~---~~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~~~~ 77 (592)
+||+||||||||||+++|+|..+|. +|+|.+||+++.. ..+++.++||+|++.+|+. |++|| . .
T Consensus 352 ~aivG~sGsGKSTL~~ll~g~~~~~--~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~-ti~~n---~------~- 418 (547)
T PRK10522 352 LFLIGGNGSGKSTLAMLLTGLYQPQ--SGEILLDGKPVTAEQPEDYRKLFSAVFTDFHLFDQ-LLGPE---G------K- 418 (547)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCCC--CeEEEECCEECCCCCHHHHhhheEEEecChhHHHH-hhccc---c------C-
Confidence 5899999999999999999998854 5999999998764 3467789999999998876 78776 1 0
Q ss_pred CCHHHHHHHHHHHHHHcCCcccccccccCC--CCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHH
Q 048028 78 VTKTKKQERVEALINQLGLRSAAKTFIGDE--RHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVNVLQ 155 (592)
Q Consensus 78 ~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~--~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~ 155 (592)
...++.+++.++.+++.+..+. ++. ....||||||||++|||+++++|++|+||||||+||+.++..+.+.+.
T Consensus 419 ---~~~~~~~~~~~~~~~l~~~~~~--~~~~~~G~~LSgGq~qRl~lARal~~~~~ililDE~ts~LD~~~~~~i~~~l~ 493 (547)
T PRK10522 419 ---PANPALVEKWLERLKMAHKLEL--EDGRISNLKLSKGQKKRLALLLALAEERDILLLDEWAADQDPHFRREFYQVLL 493 (547)
T ss_pred ---chHHHHHHHHHHHcCCchhhhc--cccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHH
Confidence 1234567889999998764432 221 245799999999999999999999999999999999999999999998
Q ss_pred HHHH-cCCEEEEEecCChhHHHhhhceEEEecCCeEeee
Q 048028 156 RIAK-SGSIVIMSIHQPSYRILSLLDRLIILSHGQSVYN 193 (592)
Q Consensus 156 ~la~-~g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~ 193 (592)
+..+ +++|+|+++|+++ ..+.+|++++|++|+++..
T Consensus 494 ~~~~~~~~tvi~itH~~~--~~~~~d~i~~l~~G~i~e~ 530 (547)
T PRK10522 494 PLLQEMGKTIFAISHDDH--YFIHADRLLEMRNGQLSEL 530 (547)
T ss_pred HHHHhCCCEEEEEEechH--HHHhCCEEEEEECCEEEEe
Confidence 7654 5899999999985 5678999999999999865
No 328
>PLN03130 ABC transporter C family member; Provisional
Probab=99.98 E-value=4.6e-32 Score=332.40 Aligned_cols=184 Identities=22% Similarity=0.341 Sum_probs=156.5
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCc---ccccceeEEEccCCCCCCCCCHHHHHHHHHHccCCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLES---KLLKIISAYVMQDDLLFPMLTVEETLMFAAEFRLPRS 77 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~---~~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~~~~ 77 (592)
+||+|+||||||||+++|.|++++. +|+|.+||.++.. ..+|+.+++||||+.+|+. |+||||.... .
T Consensus 1268 VaIVGrSGSGKSTLl~lL~rl~~p~--~G~I~IDG~dI~~i~l~~LR~~IsiVpQdp~LF~G-TIreNLd~~~------~ 1338 (1622)
T PLN03130 1268 VGIVGRTGAGKSSMLNALFRIVELE--RGRILIDGCDISKFGLMDLRKVLGIIPQAPVLFSG-TVRFNLDPFN------E 1338 (1622)
T ss_pred EEEECCCCCCHHHHHHHHhCcCCCC--CceEEECCEecccCCHHHHHhccEEECCCCccccc-cHHHHhCcCC------C
Confidence 5899999999999999999998864 5999999999864 4578889999999999987 9999996531 1
Q ss_pred CCHHHHHHHHHHHHHHcCCc-------ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHH
Q 048028 78 VTKTKKQERVEALINQLGLR-------SAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMV 150 (592)
Q Consensus 78 ~~~~~~~~~v~~~l~~lgL~-------~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i 150 (592)
.++ +.+.++++..++. +..||.||+ ....||||||||++|||||+++|+||+||||||+||+.+...|
T Consensus 1339 ~td----eei~~Al~~a~l~~~I~~lp~GLdt~Vge-~G~nLSgGQrQrlaLARALLr~p~ILILDEATSaLD~~Te~~I 1413 (1622)
T PLN03130 1339 HND----ADLWESLERAHLKDVIRRNSLGLDAEVSE-AGENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALI 1413 (1622)
T ss_pred CCH----HHHHHHHHHcCcHHHHHhCccccCccccC-CCCCCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHH
Confidence 222 3455555555443 456888875 5567999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCEEEEEecCChhHHHhhhceEEEecCCeEeeecChhhHHH
Q 048028 151 VNVLQRIAKSGSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNETPSNLAQ 201 (592)
Q Consensus 151 ~~~l~~la~~g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~~~~~~ 201 (592)
.+.|++.. +++|+|+++|.++. ...||||++|++|++++.|+++++.+
T Consensus 1414 q~~I~~~~-~~~TvI~IAHRL~t--I~~~DrIlVLd~G~IvE~Gt~~eLl~ 1461 (1622)
T PLN03130 1414 QKTIREEF-KSCTMLIIAHRLNT--IIDCDRILVLDAGRVVEFDTPENLLS 1461 (1622)
T ss_pred HHHHHHHC-CCCEEEEEeCChHH--HHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 99999975 48999999999973 45699999999999999999999853
No 329
>PRK13409 putative ATPase RIL; Provisional
Probab=99.98 E-value=9e-32 Score=301.46 Aligned_cols=168 Identities=27% Similarity=0.350 Sum_probs=144.5
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCcccccceeEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCH
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLESKLLKIISAYVMQDDLLFPMLTVEETLMFAAEFRLPRSVTK 80 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~ 80 (592)
++|+||||||||||+++|+|+.+|. +|+|.++ ..++|++|+..+.+.+||+|++.+.... ..
T Consensus 368 v~l~G~NGsGKSTLlk~L~Gl~~p~--~G~I~~~----------~~i~y~~Q~~~~~~~~tv~e~l~~~~~~-----~~- 429 (590)
T PRK13409 368 IGIVGPNGIGKTTFAKLLAGVLKPD--EGEVDPE----------LKISYKPQYIKPDYDGTVEDLLRSITDD-----LG- 429 (590)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCCC--ceEEEEe----------eeEEEecccccCCCCCcHHHHHHHHhhh-----cC-
Confidence 5899999999999999999998754 5999885 1379999998888999999999875321 11
Q ss_pred HHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc
Q 048028 81 TKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVNVLQRIAKS 160 (592)
Q Consensus 81 ~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~la~~ 160 (592)
....++++++.++|.+..++.++ .|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|++++++
T Consensus 430 --~~~~~~~~L~~l~l~~~~~~~~~-----~LSGGe~QRvaiAraL~~~p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~ 502 (590)
T PRK13409 430 --SSYYKSEIIKPLQLERLLDKNVK-----DLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEE 502 (590)
T ss_pred --hHHHHHHHHHHCCCHHHHhCCcc-----cCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHh
Confidence 12357889999999877766654 59999999999999999999999999999999999999999999999875
Q ss_pred -CCEEEEEecCChhHHHhhhceEEEecCCeEeeecC
Q 048028 161 -GSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNET 195 (592)
Q Consensus 161 -g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~ 195 (592)
|+|||+++||+. .+..++||+++|+ |++...|.
T Consensus 503 ~g~tviivsHD~~-~~~~~aDrvivl~-~~~~~~g~ 536 (590)
T PRK13409 503 REATALVVDHDIY-MIDYISDRLMVFE-GEPGKHGH 536 (590)
T ss_pred CCCEEEEEeCCHH-HHHHhCCEEEEEc-Ccceeeee
Confidence 899999999987 5888999999996 47776665
No 330
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.98 E-value=1.1e-31 Score=300.67 Aligned_cols=181 Identities=25% Similarity=0.348 Sum_probs=145.7
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCcccccceeEEEccCCCCCCCCCHHHHHHHHHHc-cC-----
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLESKLLKIISAYVMQDDLLFPMLTVEETLMFAAEF-RL----- 74 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l-~~----- 74 (592)
++|+|||||||||||++|+|+.+|. +|+|.+++. ..+|||+|++.+++++||+||+.++... +.
T Consensus 34 ~~liG~NGsGKSTLl~~i~G~~~p~--~G~i~~~~~--------~~i~~v~Q~~~~~~~~tv~e~i~~~~~~~~~~~~~~ 103 (552)
T TIGR03719 34 IGVLGLNGAGKSTLLRIMAGVDKEF--NGEARPAPG--------IKVGYLPQEPQLDPTKTVRENVEEGVAEIKDALDRF 103 (552)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCCC--CceEEecCC--------CEEEEEeccCCCCCCCcHHHHHHHhhHHHHHHHHHH
Confidence 5899999999999999999998754 599998752 3589999999999999999999875321 00
Q ss_pred -----CCCCCHHH----------------------HHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHh
Q 048028 75 -----PRSVTKTK----------------------KQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHII 127 (592)
Q Consensus 75 -----~~~~~~~~----------------------~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~ 127 (592)
....+..+ ..++++++++.+|+.. .++.+ +.|||||||||+||++|+
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~-----~~LSgGqkqrv~la~al~ 177 (552)
T TIGR03719 104 NEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDALRCPP-WDADV-----TKLSGGERRRVALCRLLL 177 (552)
T ss_pred HHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhCCCCc-ccCch-----hhcCHHHHHHHHHHHHHh
Confidence 00000010 1245677888888853 44444 569999999999999999
Q ss_pred hCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCChhHHHhhhceEEEecCCeEe-eecChhhHHH
Q 048028 128 HDPILLFLDEPTSGLDSTSAFMVVNVLQRIAKSGSIVIMSIHQPSYRILSLLDRLIILSHGQSV-YNETPSNLAQ 201 (592)
Q Consensus 128 ~~p~lllLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v-~~g~~~~~~~ 201 (592)
.+|++|||||||++||+.++..+.+.|+++ +.|||+++|+++ .+..+||++++|++|+++ +.|+.++..+
T Consensus 178 ~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~---~~tvIiisHd~~-~~~~~~d~v~~l~~g~i~~~~g~~~~~~~ 248 (552)
T TIGR03719 178 SKPDMLLLDEPTNHLDAESVAWLEQHLQEY---PGTVVAVTHDRY-FLDNVAGWILELDRGRGIPWEGNYSSWLE 248 (552)
T ss_pred cCCCEEEEcCCCCCCChHHHHHHHHHHHhC---CCeEEEEeCCHH-HHHhhcCeEEEEECCEEEEecCCHHHHHH
Confidence 999999999999999999999999999876 359999999997 588899999999999975 7888876543
No 331
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=99.97 E-value=1.5e-31 Score=299.87 Aligned_cols=176 Identities=20% Similarity=0.315 Sum_probs=145.5
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCc---ccccceeEEEccCCCCCCCCCHHHHHHHHHHccCCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLES---KLLKIISAYVMQDDLLFPMLTVEETLMFAAEFRLPRS 77 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~---~~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~~~~ 77 (592)
+||+||||||||||+|+|+|..+|. +|+|.+||.++.+ ..+++.++||+|++.+|+. |++||. .
T Consensus 371 ~aivG~sGsGKSTl~~ll~g~~~p~--~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~-ti~~n~------~---- 437 (555)
T TIGR01194 371 VFIVGENGCGKSTLAKLFCGLYIPQ--EGEILLDGAAVSADSRDDYRDLFSAIFADFHLFDD-LIGPDE------G---- 437 (555)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCCC--CcEEEECCEECCCCCHHHHHhhCcEEccChhhhhh-hhhccc------c----
Confidence 5899999999999999999998864 5999999998864 3466789999999998876 788873 1
Q ss_pred CCHHHHHHHHHHHHHHcCCcccccccc-cCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHH-
Q 048028 78 VTKTKKQERVEALINQLGLRSAAKTFI-GDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVNVLQ- 155 (592)
Q Consensus 78 ~~~~~~~~~v~~~l~~lgL~~~~~~~v-g~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~- 155 (592)
+...+++++++++.+++.+..+... |-+....||||||||++|||+++.+|++++|||||++||+.+...+.+.+.
T Consensus 438 --~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~LSgGq~qRlalaRall~~~~ililDE~ts~LD~~~~~~i~~~l~~ 515 (555)
T TIGR01194 438 --EHASLDNAQQYLQRLEIADKVKIEDGGFSTTTALSTGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLP 515 (555)
T ss_pred --cchhHHHHHHHHHHcCCchhhcccccccCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHH
Confidence 1123456788999999886554322 222346799999999999999999999999999999999999999998664
Q ss_pred HHHHcCCEEEEEecCChhHHHhhhceEEEecCCeEeee
Q 048028 156 RIAKSGSIVIMSIHQPSYRILSLLDRLIILSHGQSVYN 193 (592)
Q Consensus 156 ~la~~g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~ 193 (592)
++..+|+|+|+++|+++ ..+.+|+|++|++|+++..
T Consensus 516 ~~~~~~~tiiiisH~~~--~~~~~d~i~~l~~G~i~~~ 551 (555)
T TIGR01194 516 DLKRQGKTIIIISHDDQ--YFELADQIIKLAAGCIVKD 551 (555)
T ss_pred HHHhCCCEEEEEeccHH--HHHhCCEEEEEECCEEEEe
Confidence 56557899999999986 4678999999999998753
No 332
>PTZ00243 ABC transporter; Provisional
Probab=99.97 E-value=1.4e-31 Score=327.75 Aligned_cols=183 Identities=22% Similarity=0.340 Sum_probs=157.0
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCc---ccccceeEEEccCCCCCCCCCHHHHHHHHHHccCCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLES---KLLKIISAYVMQDDLLFPMLTVEETLMFAAEFRLPRS 77 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~---~~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~~~~ 77 (592)
+||+|+||||||||+++|.|++++. +|+|.+||.++.. ..+|+.++||||++.+|+. |+||||... ..
T Consensus 1339 VaIVGrTGSGKSTLl~lLlrl~~p~--~G~I~IDG~di~~i~l~~LR~~I~iVpQdp~LF~g-TIreNIdp~------~~ 1409 (1560)
T PTZ00243 1339 VGIVGRTGSGKSTLLLTFMRMVEVC--GGEIRVNGREIGAYGLRELRRQFSMIPQDPVLFDG-TVRQNVDPF------LE 1409 (1560)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCCC--CcEEEECCEEcccCCHHHHHhcceEECCCCccccc-cHHHHhCcc------cC
Confidence 5899999999999999999998854 5999999999864 4578889999999999987 999999531 12
Q ss_pred CCHHHHHHHHHHHHHHcCCcc-------cccccccCCCCCCCCHHHHHHHHHHHHHhhC-CcEEEEeCCCCCCCHHHHHH
Q 048028 78 VTKTKKQERVEALINQLGLRS-------AAKTFIGDERHRGVSGGERRRVSIGIHIIHD-PILLFLDEPTSGLDSTSAFM 149 (592)
Q Consensus 78 ~~~~~~~~~v~~~l~~lgL~~-------~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~-p~lllLDEPtsgLD~~~~~~ 149 (592)
.+ ++.+.++++..++.+ -.||.+|+ ....||||||||++|||||+++ |+||+||||||+||+.+...
T Consensus 1410 ~s----deeI~~Al~~a~l~~~I~~lp~Gldt~vge-~G~nLSgGQrQrLaLARALL~~~~~ILlLDEATSaLD~~te~~ 1484 (1560)
T PTZ00243 1410 AS----SAEVWAALELVGLRERVASESEGIDSRVLE-GGSNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQ 1484 (1560)
T ss_pred CC----HHHHHHHHHHCCChHHHhhCcccccccccC-CcCcCCHHHHHHHHHHHHHhcCCCCEEEEeCCCccCCHHHHHH
Confidence 22 245677777776654 46888875 5567999999999999999995 89999999999999999999
Q ss_pred HHHHHHHHHHcCCEEEEEecCChhHHHhhhceEEEecCCeEeeecChhhHH
Q 048028 150 VVNVLQRIAKSGSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNETPSNLA 200 (592)
Q Consensus 150 i~~~l~~la~~g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~~~~~ 200 (592)
+.+.|++.. +++|+|+++|.++ ....||+|++|++|+++..|+++++.
T Consensus 1485 Iq~~L~~~~-~~~TvI~IAHRl~--ti~~~DrIlVLd~G~VvE~Gt~~eLl 1532 (1560)
T PTZ00243 1485 IQATVMSAF-SAYTVITIAHRLH--TVAQYDKIIVMDHGAVAEMGSPRELV 1532 (1560)
T ss_pred HHHHHHHHC-CCCEEEEEeccHH--HHHhCCEEEEEECCEEEEECCHHHHH
Confidence 999999864 4799999999986 46779999999999999999999885
No 333
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.97 E-value=1.4e-31 Score=328.14 Aligned_cols=184 Identities=22% Similarity=0.311 Sum_probs=156.4
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCc---ccccceeEEEccCCCCCCCCCHHHHHHHHHHccCCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLES---KLLKIISAYVMQDDLLFPMLTVEETLMFAAEFRLPRS 77 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~---~~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~~~~ 77 (592)
+||+|+||||||||+++|.|++++. +|+|.+||.++.. ...|+.++|||||+.+|+. |+||||.... .
T Consensus 1315 iaIVGrTGsGKSTL~~lL~rl~~~~--~G~I~IdG~dI~~i~~~~LR~~i~iVpQdp~LF~g-TIr~NLdp~~------~ 1385 (1522)
T TIGR00957 1315 VGIVGRTGAGKSSLTLGLFRINESA--EGEIIIDGLNIAKIGLHDLRFKITIIPQDPVLFSG-SLRMNLDPFS------Q 1385 (1522)
T ss_pred EEEECCCCCCHHHHHHHHhcCccCC--CCeEEECCEEccccCHHHHHhcCeEECCCCcccCc-cHHHHcCccc------C
Confidence 5899999999999999999998754 5999999999864 4578889999999999997 9999996211 1
Q ss_pred CCHHHHHHHHHHHHHHcCCc-------ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHH
Q 048028 78 VTKTKKQERVEALINQLGLR-------SAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMV 150 (592)
Q Consensus 78 ~~~~~~~~~v~~~l~~lgL~-------~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i 150 (592)
.++ +.+.++++..++. +..||.||+ ....||||||||++|||||+++|+||+||||||+||+.+...+
T Consensus 1386 ~sd----eei~~al~~a~l~~~I~~lp~GLdt~v~e-~G~~LSgGQrQrl~LARALLr~~~ILiLDEaTSalD~~Te~~I 1460 (1522)
T TIGR00957 1386 YSD----EEVWWALELAHLKTFVSALPDKLDHECAE-GGENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLI 1460 (1522)
T ss_pred CCH----HHHHHHHHHcCcHHHHhhCccCCCceecC-CCCcCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHH
Confidence 233 3455666666654 346888875 5567999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCEEEEEecCChhHHHhhhceEEEecCCeEeeecChhhHHH
Q 048028 151 VNVLQRIAKSGSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNETPSNLAQ 201 (592)
Q Consensus 151 ~~~l~~la~~g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~~~~~~ 201 (592)
.+.|++.. +++|+|+++|+++ ....+|||++|++|+++..|+++++.+
T Consensus 1461 q~~l~~~~-~~~TvI~IAHRl~--ti~~~DrIlVld~G~IvE~G~~~eLl~ 1508 (1522)
T TIGR00957 1461 QSTIRTQF-EDCTVLTIAHRLN--TIMDYTRVIVLDKGEVAEFGAPSNLLQ 1508 (1522)
T ss_pred HHHHHHHc-CCCEEEEEecCHH--HHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 99999874 4799999999996 356799999999999999999998853
No 334
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.97 E-value=1.8e-31 Score=324.41 Aligned_cols=182 Identities=26% Similarity=0.450 Sum_probs=146.9
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEEC-CEecCc---ccccceeEEEccCCCCCCCCCHHHHHHHHHHc-cC-
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLN-GEVLES---KLLKIISAYVMQDDLLFPMLTVEETLMFAAEF-RL- 74 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~-g~~~~~---~~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l-~~- 74 (592)
+||+||||||||||+++|+|+++|. +|+|.++ |.++.. ..+|+.+|||+|++.+|+. ||+||+.++... +.
T Consensus 414 vaIvG~SGsGKSTLl~lL~gl~~p~--~G~I~i~~g~~i~~~~~~~lr~~Ig~V~Q~~~LF~~-TI~eNI~~g~~~~~~~ 490 (1466)
T PTZ00265 414 YAFVGESGCGKSTILKLIERLYDPT--EGDIIINDSHNLKDINLKWWRSKIGVVSQDPLLFSN-SIKNNIKYSLYSLKDL 490 (1466)
T ss_pred EEEECCCCCCHHHHHHHHHHhccCC--CCeEEEeCCcchhhCCHHHHHHhccEecccccchhc-cHHHHHHhcCCCcccc
Confidence 5899999999999999999998864 5999994 677643 3457789999999999985 999999986310 00
Q ss_pred --------CC----C-------------------------C---------CHHHHHHHHHHHHHHcCCcc-------ccc
Q 048028 75 --------PR----S-------------------------V---------TKTKKQERVEALINQLGLRS-------AAK 101 (592)
Q Consensus 75 --------~~----~-------------------------~---------~~~~~~~~v~~~l~~lgL~~-------~~~ 101 (592)
+. . . .....++++.++++.+++.+ ..|
T Consensus 491 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~d 570 (1466)
T PTZ00265 491 EALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNELIEMRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYE 570 (1466)
T ss_pred chhccccccccccccccccccccccccccchhhhcccccchhhhhhcccccccCCHHHHHHHHHHhCcHHHHHhCccccC
Confidence 00 0 0 00112345777777776654 357
Q ss_pred ccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEecCChhHHHhhhc
Q 048028 102 TFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVNVLQRIAK-SGSIVIMSIHQPSYRILSLLD 180 (592)
Q Consensus 102 ~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~la~-~g~tvi~~~H~~~~~i~~~~D 180 (592)
|.+|. .+..||||||||++|||||+++|+|||||||||+||+.++..+.+.|+++++ +|+|+|+++|+++ .+ +.||
T Consensus 571 T~vg~-~g~~LSGGQkQRiaIARAll~~P~ILlLDEpTSaLD~~se~~i~~~L~~~~~~~g~TvIiIsHrls-~i-~~aD 647 (1466)
T PTZ00265 571 TLVGS-NASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTINNLKGNENRITIIIAHRLS-TI-RYAN 647 (1466)
T ss_pred ceeCC-CCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhhcCCCEEEEEeCCHH-HH-HhCC
Confidence 77865 4678999999999999999999999999999999999999999999999986 5899999999997 34 7899
Q ss_pred eEEEecCC
Q 048028 181 RLIILSHG 188 (592)
Q Consensus 181 ~v~ll~~G 188 (592)
+|++|++|
T Consensus 648 ~Iivl~~g 655 (1466)
T PTZ00265 648 TIFVLSNR 655 (1466)
T ss_pred EEEEEeCC
Confidence 99999986
No 335
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.97 E-value=8.4e-31 Score=293.68 Aligned_cols=174 Identities=22% Similarity=0.351 Sum_probs=142.2
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCcccccceeEEEccCC-CCCCCCCHHHHHHHHHHccCCCCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLESKLLKIISAYVMQDD-LLFPMLTVEETLMFAAEFRLPRSVT 79 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~~~~~~~~~yv~Q~~-~l~~~lTV~E~l~f~~~l~~~~~~~ 79 (592)
++|+||||||||||+++|+|+.+|. +|+|.+++. ..+||++|+. .+++.+||+|++.+...... ..
T Consensus 353 ~~l~G~NGsGKSTLl~~i~G~~~p~--~G~i~~~~~--------~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~---~~ 419 (556)
T PRK11819 353 VGIIGPNGAGKSTLFKMITGQEQPD--SGTIKIGET--------VKLAYVDQSRDALDPNKTVWEEISGGLDIIK---VG 419 (556)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCCC--CeEEEECCc--------eEEEEEeCchhhcCCCCCHHHHHHhhccccc---cc
Confidence 5899999999999999999998754 599998542 1489999996 78899999999988643221 11
Q ss_pred HHHHHHHHHHHHHHcCCcc-cccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 048028 80 KTKKQERVEALINQLGLRS-AAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVNVLQRIA 158 (592)
Q Consensus 80 ~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~la 158 (592)
.. ...++++++.+|+.+ ..++.+ ..|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++.
T Consensus 420 ~~--~~~~~~~l~~~~l~~~~~~~~~-----~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~ 492 (556)
T PRK11819 420 NR--EIPSRAYVGRFNFKGGDQQKKV-----GVLSGGERNRLHLAKTLKQGGNVLLLDEPTNDLDVETLRALEEALLEFP 492 (556)
T ss_pred cc--HHHHHHHHHhCCCChhHhcCch-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhCC
Confidence 11 223557899999964 455555 4699999999999999999999999999999999999999999999873
Q ss_pred HcCCEEEEEecCChhHHHhhhceEEEecC-CeEe-eecChhh
Q 048028 159 KSGSIVIMSIHQPSYRILSLLDRLIILSH-GQSV-YNETPSN 198 (592)
Q Consensus 159 ~~g~tvi~~~H~~~~~i~~~~D~v~ll~~-G~~v-~~g~~~~ 198 (592)
| |||++||+++ .+.++||++++|++ |++. +.|+.++
T Consensus 493 --~-tvi~vtHd~~-~~~~~~d~i~~l~~~g~~~~~~g~~~~ 530 (556)
T PRK11819 493 --G-CAVVISHDRW-FLDRIATHILAFEGDSQVEWFEGNFQE 530 (556)
T ss_pred --C-eEEEEECCHH-HHHHhCCEEEEEECCCeEEEecCCHHH
Confidence 4 8999999987 68899999999986 7776 5665543
No 336
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.97 E-value=8e-31 Score=250.24 Aligned_cols=129 Identities=26% Similarity=0.454 Sum_probs=114.2
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCcccccceeEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCH
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLESKLLKIISAYVMQDDLLFPMLTVEETLMFAAEFRLPRSVTK 80 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~ 80 (592)
++|+||||||||||+|+|+|+.++. +|+|.++|++ ++|++|+..
T Consensus 28 ~~l~G~nGsGKSTLl~~l~Gl~~p~--~G~i~~~g~~---------i~~~~q~~~------------------------- 71 (177)
T cd03222 28 IGIVGPNGTGKTTAVKILAGQLIPN--GDNDEWDGIT---------PVYKPQYID------------------------- 71 (177)
T ss_pred EEEECCCCChHHHHHHHHHcCCCCC--CcEEEECCEE---------EEEEcccCC-------------------------
Confidence 5899999999999999999998754 5999999863 678887432
Q ss_pred HHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc
Q 048028 81 TKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVNVLQRIAKS 160 (592)
Q Consensus 81 ~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~la~~ 160 (592)
||||||||++||++|+.+|++++|||||+|||+.++..+.+.+++++++
T Consensus 72 -------------------------------LSgGq~qrv~laral~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~ 120 (177)
T cd03222 72 -------------------------------LSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEE 120 (177)
T ss_pred -------------------------------CCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHc
Confidence 9999999999999999999999999999999999999999999999877
Q ss_pred C-CEEEEEecCChhHHHhhhceEEEecCCeEeee--cChh
Q 048028 161 G-SIVIMSIHQPSYRILSLLDRLIILSHGQSVYN--ETPS 197 (592)
Q Consensus 161 g-~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~--g~~~ 197 (592)
+ .|+|+++|+++ .+.+++|++++|+++-.++. |+|.
T Consensus 121 ~~~tiiivsH~~~-~~~~~~d~i~~l~~~~~~~~~~~~~~ 159 (177)
T cd03222 121 GKKTALVVEHDLA-VLDYLSDRIHVFEGEPGVYGIASQPK 159 (177)
T ss_pred CCCEEEEEECCHH-HHHHhCCEEEEEcCCCccceeccCCc
Confidence 5 89999999987 57789999999998766654 5554
No 337
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.97 E-value=1.2e-30 Score=292.31 Aligned_cols=173 Identities=23% Similarity=0.364 Sum_probs=141.5
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCcccccceeEEEccCC-CCCCCCCHHHHHHHHHHccCCCCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLESKLLKIISAYVMQDD-LLFPMLTVEETLMFAAEFRLPRSVT 79 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~~~~~~~~~yv~Q~~-~l~~~lTV~E~l~f~~~l~~~~~~~ 79 (592)
++|+|||||||||||++|+|..+|. +|+|.+++. ..++|++|+. .+++.+||.|++.+...... ..
T Consensus 351 ~~l~G~NGsGKSTLl~~l~G~~~p~--~G~i~~~~~--------~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~---~~ 417 (552)
T TIGR03719 351 VGVIGPNGAGKSTLFRMITGQEQPD--SGTIKIGET--------VKLAYVDQSRDALDPNKTVWEEISGGLDIIQ---LG 417 (552)
T ss_pred EEEECCCCCCHHHHHHHHcCCCCCC--CeEEEECCc--------eEEEEEeCCccccCCCCcHHHHHHhhccccc---cC
Confidence 5899999999999999999998754 599998542 1489999996 58889999999988643221 11
Q ss_pred HHHHHHHHHHHHHHcCCcc-cccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 048028 80 KTKKQERVEALINQLGLRS-AAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVNVLQRIA 158 (592)
Q Consensus 80 ~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~la 158 (592)
.. +.+++++++.+|+.+ ..++.+ ..|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|+++.
T Consensus 418 ~~--~~~~~~~l~~~~l~~~~~~~~~-----~~LSgGe~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~ 490 (552)
T TIGR03719 418 KR--EVPSRAYVGRFNFKGSDQQKKV-----GQLSGGERNRVHLAKTLKSGGNVLLLDEPTNDLDVETLRALEEALLEFA 490 (552)
T ss_pred cc--hHHHHHHHHhCCCChhHhcCch-----hhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHCC
Confidence 11 234567899999964 455555 4599999999999999999999999999999999999999999999983
Q ss_pred HcCCEEEEEecCChhHHHhhhceEEEecC-CeEe-eecChh
Q 048028 159 KSGSIVIMSIHQPSYRILSLLDRLIILSH-GQSV-YNETPS 197 (592)
Q Consensus 159 ~~g~tvi~~~H~~~~~i~~~~D~v~ll~~-G~~v-~~g~~~ 197 (592)
+ |||++||++. .+.++||++++|++ |+++ +.|+.+
T Consensus 491 --~-~viivsHd~~-~~~~~~d~i~~l~~~~~~~~~~g~~~ 527 (552)
T TIGR03719 491 --G-CAVVISHDRW-FLDRIATHILAFEGDSHVEWFEGNYS 527 (552)
T ss_pred --C-eEEEEeCCHH-HHHHhCCEEEEEECCCeEEEeCCCHH
Confidence 3 8999999987 68889999999986 5766 556554
No 338
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=99.97 E-value=8.1e-32 Score=279.12 Aligned_cols=188 Identities=28% Similarity=0.450 Sum_probs=158.3
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCc---ccccceeEEEccCCCCCCCCCHHHHHHHHHHccCCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLES---KLLKIISAYVMQDDLLFPMLTVEETLMFAAEFRLPRS 77 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~---~~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~~~~ 77 (592)
+||+||||+||||++++|-...+ ..+|.|.+||+++.. ...|+.+|.||||..+|.+ |+..|+.|+. | +
T Consensus 567 vAlVG~SGaGKSTimRlLfRffd--v~sGsI~iDgqdIrnvt~~SLRs~IGVVPQDtvLFNd-TI~yNIryak----~-~ 638 (790)
T KOG0056|consen 567 VALVGPSGAGKSTIMRLLFRFFD--VNSGSITIDGQDIRNVTQSSLRSSIGVVPQDTVLFND-TILYNIRYAK----P-S 638 (790)
T ss_pred EEEECCCCCchhHHHHHHHHHhh--ccCceEEEcCchHHHHHHHHHHHhcCcccCcceeecc-eeeeheeecC----C-C
Confidence 58999999999999999999976 346999999999854 4678889999999999987 9999998852 2 2
Q ss_pred CCHHHHHH--HHHHHHH-HcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHH
Q 048028 78 VTKTKKQE--RVEALIN-QLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVNVL 154 (592)
Q Consensus 78 ~~~~~~~~--~v~~~l~-~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l 154 (592)
.+.++..+ ++.++=+ .++..+..+|+||++..+ |||||||||+|||+++++|.+++|||.||+||..+.+.|...|
T Consensus 639 AsneevyaAAkAA~IHdrIl~fPegY~t~VGERGLk-LSGGEKQRVAiARtiLK~P~iIlLDEATSALDT~tER~IQaaL 717 (790)
T KOG0056|consen 639 ASNEEVYAAAKAAQIHDRILQFPEGYNTRVGERGLK-LSGGEKQRVAIARTILKAPSIILLDEATSALDTNTERAIQAAL 717 (790)
T ss_pred CChHHHHHHHHHhhHHHHHhcCchhhhhhhhhcccc-cCCcchhhHHHHHHHhcCCcEEEEcchhhhcCCccHHHHHHHH
Confidence 23333322 2222222 368888899999986665 9999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCEEEEEecCChhHHHhhhceEEEecCCeEeeecChhhHH
Q 048028 155 QRIAKSGSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNETPSNLA 200 (592)
Q Consensus 155 ~~la~~g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~~~~~ 200 (592)
.++++ ++|.|++.|..+. .--+|.|+++++|+|++.|..+|+.
T Consensus 718 ~rlca-~RTtIVvAHRLST--ivnAD~ILvi~~G~IvErG~HeeLl 760 (790)
T KOG0056|consen 718 ARLCA-NRTTIVVAHRLST--IVNADLILVISNGRIVERGRHEELL 760 (790)
T ss_pred HHHhc-CCceEEEeeeehh--eecccEEEEEeCCeEeecCcHHHHH
Confidence 99986 7899999999973 4469999999999999999998874
No 339
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.97 E-value=6.6e-31 Score=259.86 Aligned_cols=156 Identities=26% Similarity=0.428 Sum_probs=138.6
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCcccccceeEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCH
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLESKLLKIISAYVMQDDLLFPMLTVEETLMFAAEFRLPRSVTK 80 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~ 80 (592)
++|+|+||||||||-|+|.|+.+| ++|+|.++|+++.... +
T Consensus 42 ~glVGESG~GKSTlgr~i~~L~~p--t~G~i~f~g~~i~~~~-------------------------------------~ 82 (268)
T COG4608 42 LGLVGESGCGKSTLGRLILGLEEP--TSGEILFEGKDITKLS-------------------------------------K 82 (268)
T ss_pred EEEEecCCCCHHHHHHHHHcCcCC--CCceEEEcCcchhhcc-------------------------------------h
Confidence 489999999999999999999885 4599999999865322 3
Q ss_pred HHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc
Q 048028 81 TKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVNVLQRIAKS 160 (592)
Q Consensus 81 ~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~la~~ 160 (592)
.+..+++.++|+.+|+.+.. -+++++++|||||||+.|||||+.+|+++++|||+|.||...+.+++++|+++.++
T Consensus 83 ~~~~~~v~elL~~Vgl~~~~----~~ryPhelSGGQrQRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~ 158 (268)
T COG4608 83 EERRERVLELLEKVGLPEEF----LYRYPHELSGGQRQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEE 158 (268)
T ss_pred hHHHHHHHHHHHHhCCCHHH----hhcCCcccCchhhhhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHH
Confidence 45667899999999986421 14567899999999999999999999999999999999999999999999999875
Q ss_pred -CCEEEEEecCChhHHHhhhceEEEecCCeEeeecChhhHH
Q 048028 161 -GSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNETPSNLA 200 (592)
Q Consensus 161 -g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~~~~~ 200 (592)
|.|.++++||.+ .+..++||+.+|+.|+++..|+.+++.
T Consensus 159 ~~lt~lFIsHDL~-vv~~isdri~VMy~G~iVE~g~~~~~~ 198 (268)
T COG4608 159 LGLTYLFISHDLS-VVRYISDRIAVMYLGKIVEIGPTEEVF 198 (268)
T ss_pred hCCeEEEEEEEHH-hhhhhcccEEEEecCceeEecCHHHHh
Confidence 999999999998 588999999999999999999998874
No 340
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.97 E-value=6.9e-31 Score=321.25 Aligned_cols=182 Identities=21% Similarity=0.337 Sum_probs=156.6
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCc---ccccceeEEEccCCCCCCCCCHHHHHHHHHHccCCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLES---KLLKIISAYVMQDDLLFPMLTVEETLMFAAEFRLPRS 77 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~---~~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~~~~ 77 (592)
+||+|+||||||||+++|.|+.+ .+|+|.+||.++.. ..+|+.++||||++.+|+. |+||||.... .
T Consensus 1248 vaIvGrSGsGKSTLl~lL~rl~~---~~G~I~IdG~di~~i~~~~lR~~is~IpQdp~LF~G-TIR~NLdp~~------~ 1317 (1490)
T TIGR01271 1248 VGLLGRTGSGKSTLLSALLRLLS---TEGEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSG-TFRKNLDPYE------Q 1317 (1490)
T ss_pred EEEECCCCCCHHHHHHHHhhhcC---CCcEEEECCEEcccCCHHHHHhceEEEeCCCccCcc-CHHHHhCccc------C
Confidence 58999999999999999999975 36999999999864 4578889999999999997 9999995321 1
Q ss_pred CCHHHHHHHHHHHHHHcCCc-------ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHH
Q 048028 78 VTKTKKQERVEALINQLGLR-------SAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMV 150 (592)
Q Consensus 78 ~~~~~~~~~v~~~l~~lgL~-------~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i 150 (592)
.+ ++++.++++..+|. +..|+.||+ ....||||||||++|||||+++|+||+||||||+||+.+...+
T Consensus 1318 ~t----deei~~aL~~~~L~~~i~~lp~GLdt~v~e-~G~nLSgGQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I 1392 (1490)
T TIGR01271 1318 WS----DEEIWKVAEEVGLKSVIEQFPDKLDFVLVD-GGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQII 1392 (1490)
T ss_pred CC----HHHHHHHHHHCCCHHHHHhCcccccccccc-CCCcCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHH
Confidence 22 34577778877764 346788875 5567999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCEEEEEecCChhHHHhhhceEEEecCCeEeeecChhhHH
Q 048028 151 VNVLQRIAKSGSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNETPSNLA 200 (592)
Q Consensus 151 ~~~l~~la~~g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~~~~~ 200 (592)
.+.|++.. +++|||+++|.++ ....+|||++|++|+++..|+++++.
T Consensus 1393 ~~~L~~~~-~~~TvI~IaHRl~--ti~~~DrIlvL~~G~ivE~g~p~~Ll 1439 (1490)
T TIGR01271 1393 RKTLKQSF-SNCTVILSEHRVE--ALLECQQFLVIEGSSVKQYDSIQKLL 1439 (1490)
T ss_pred HHHHHHHc-CCCEEEEEecCHH--HHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 99999875 4799999999986 45669999999999999999999885
No 341
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.97 E-value=1e-30 Score=266.77 Aligned_cols=194 Identities=26% Similarity=0.472 Sum_probs=168.4
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCC---CceeEEEECCEecCc---cccc----ceeEEEccCC--CCCCCCCHHHHHHH
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKE---SLQGAVTLNGEVLES---KLLK----IISAYVMQDD--LLFPMLTVEETLMF 68 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~---~~~G~I~i~g~~~~~---~~~~----~~~~yv~Q~~--~l~~~lTV~E~l~f 68 (592)
+||+|.||||||-..+.+.|+++.. ..+|+|.++|+++-. ...+ ..+++++|++ .|.|-.|+.+.+.-
T Consensus 39 lAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~se~~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E 118 (534)
T COG4172 39 LALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAE 118 (534)
T ss_pred EEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCCHHHHhhhcccceEEEecccccccCcHhHHHHHHHH
Confidence 5899999999999999999998742 347999999998632 2222 3589999998 58888899888876
Q ss_pred HHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHH
Q 048028 69 AAEFRLPRSVTKTKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAF 148 (592)
Q Consensus 69 ~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~ 148 (592)
..++. +.+++++.++++-++|+..|+.+-...+ +.++.+|||||||||.||+||+++|++|+.||||++||..-+.
T Consensus 119 ~l~~H--rg~~~~~Ar~r~lelL~~VgI~~p~~rl--~~yPHeLSGGqRQRVMIAMALan~P~lLIADEPTTALDVtvQa 194 (534)
T COG4172 119 VLRLH--RGLSRAAARARALELLELVGIPEPEKRL--DAYPHELSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQA 194 (534)
T ss_pred HHHHH--hcccHHHHHHHHHHHHHHcCCCchhhhh--hhCCcccCcchhhHHHHHHHHcCCCCeEeecCCcchhhhhhHH
Confidence 66554 4577888899999999999998765544 6789999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHc-CCEEEEEecCChhHHHhhhceEEEecCCeEeeecChhhH
Q 048028 149 MVVNVLQRIAKS-GSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNETPSNL 199 (592)
Q Consensus 149 ~i~~~l~~la~~-g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~~~~ 199 (592)
+|+++|++|.++ |..++++|||.. -+.+++|||++|.+|++++.|+.+++
T Consensus 195 QIL~Ll~~Lq~~~gMa~lfITHDL~-iVr~~ADrV~VM~~G~ivE~~~t~~l 245 (534)
T COG4172 195 QILDLLKELQAELGMAILFITHDLG-IVRKFADRVYVMQHGEIVETGTTETL 245 (534)
T ss_pred HHHHHHHHHHHHhCcEEEEEeccHH-HHHHhhhhEEEEeccEEeecCcHHHH
Confidence 999999999865 999999999998 48889999999999999999998766
No 342
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=3.8e-30 Score=291.95 Aligned_cols=173 Identities=24% Similarity=0.405 Sum_probs=143.8
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCcccccceeEEEccCC--CCCCCCCHHHHHHHHHHccCCCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLESKLLKIISAYVMQDD--LLFPMLTVEETLMFAAEFRLPRSV 78 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~~~~~~~~~yv~Q~~--~l~~~lTV~E~l~f~~~l~~~~~~ 78 (592)
++|+||||||||||||+|+|..+|. +|+|.+++. ..+||++|+. .+.+..|+.+++.- ..
T Consensus 341 ~~l~G~NGsGKSTLlk~l~G~~~p~--~G~i~~~~~--------~~igy~~Q~~~~~l~~~~~~~~~~~~---~~----- 402 (638)
T PRK10636 341 IGLLGRNGAGKSTLIKLLAGELAPV--SGEIGLAKG--------IKLGYFAQHQLEFLRADESPLQHLAR---LA----- 402 (638)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCCC--CCeEEECCC--------EEEEEecCcchhhCCccchHHHHHHH---hC-----
Confidence 5899999999999999999998754 599999742 2479999974 45666788777531 11
Q ss_pred CHHHHHHHHHHHHHHcCCc-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 048028 79 TKTKKQERVEALINQLGLR-SAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVNVLQRI 157 (592)
Q Consensus 79 ~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~l 157 (592)
....++++.++++.+++. +..+++++ .|||||||||+||++|+.+|++|||||||+|||+.+...+.+.|+++
T Consensus 403 -~~~~~~~~~~~L~~~~l~~~~~~~~~~-----~LSgGekqRl~La~~l~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~ 476 (638)
T PRK10636 403 -PQELEQKLRDYLGGFGFQGDKVTEETR-----RFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEALIDF 476 (638)
T ss_pred -chhhHHHHHHHHHHcCCChhHhcCchh-----hCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc
Confidence 122346788999999996 35666655 59999999999999999999999999999999999999999999987
Q ss_pred HHcCCEEEEEecCChhHHHhhhceEEEecCCeEe-eecChhhHHH
Q 048028 158 AKSGSIVIMSIHQPSYRILSLLDRLIILSHGQSV-YNETPSNLAQ 201 (592)
Q Consensus 158 a~~g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v-~~g~~~~~~~ 201 (592)
.| |||++|||+. .+..+||++++|++|+++ +.|+.++..+
T Consensus 477 --~g-tvi~vSHd~~-~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 517 (638)
T PRK10636 477 --EG-ALVVVSHDRH-LLRSTTDDLYLVHDGKVEPFDGDLEDYQQ 517 (638)
T ss_pred --CC-eEEEEeCCHH-HHHHhCCEEEEEECCEEEEcCCCHHHHHH
Confidence 34 9999999987 588899999999999997 8899887643
No 343
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.97 E-value=4.5e-30 Score=244.85 Aligned_cols=144 Identities=24% Similarity=0.367 Sum_probs=117.2
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCcccccceeEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCH
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLESKLLKIISAYVMQDDLLFPMLTVEETLMFAAEFRLPRSVTK 80 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~ 80 (592)
++|+||||||||||||+|.+ .+|++.++|... ...++.++|++|
T Consensus 24 ~~l~G~nG~GKSTLl~~il~------~~G~v~~~~~~~--~~~~~~~~~~~q---------------------------- 67 (176)
T cd03238 24 VVVTGVSGSGKSTLVNEGLY------ASGKARLISFLP--KFSRNKLIFIDQ---------------------------- 67 (176)
T ss_pred EEEECCCCCCHHHHHHHHhh------cCCcEEECCccc--ccccccEEEEhH----------------------------
Confidence 58999999999999999963 259999988732 112334678776
Q ss_pred HHHHHHHHHHHHHcCCcc-cccccccCCCCCCCCHHHHHHHHHHHHHhhC--CcEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 048028 81 TKKQERVEALINQLGLRS-AAKTFIGDERHRGVSGGERRRVSIGIHIIHD--PILLFLDEPTSGLDSTSAFMVVNVLQRI 157 (592)
Q Consensus 81 ~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~--p~lllLDEPtsgLD~~~~~~i~~~l~~l 157 (592)
.+.++.++|.+ ..+. .++.||||||||++||++|+.+ |++++|||||+|||+.++..+.+.|+++
T Consensus 68 -------~~~l~~~~L~~~~~~~-----~~~~LSgGq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~ 135 (176)
T cd03238 68 -------LQFLIDVGLGYLTLGQ-----KLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGL 135 (176)
T ss_pred -------HHHHHHcCCCccccCC-----CcCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence 23567788864 2444 3457999999999999999999 9999999999999999999999999999
Q ss_pred HHcCCEEEEEecCChhHHHhhhceEEEecCCeEeeec
Q 048028 158 AKSGSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNE 194 (592)
Q Consensus 158 a~~g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g 194 (592)
+++|+|||+++|+++ ++ +.+|++++|.+|+..+.|
T Consensus 136 ~~~g~tvIivSH~~~-~~-~~~d~i~~l~~g~~~~~~ 170 (176)
T cd03238 136 IDLGNTVILIEHNLD-VL-SSADWIIDFGPGSGKSGG 170 (176)
T ss_pred HhCCCEEEEEeCCHH-HH-HhCCEEEEECCCCCCCCc
Confidence 878999999999987 34 689999999776544433
No 344
>PRK13409 putative ATPase RIL; Provisional
Probab=99.97 E-value=1.7e-30 Score=291.17 Aligned_cols=167 Identities=29% Similarity=0.402 Sum_probs=138.6
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEE-----------ECCEecCcc-----cccceeEEEccCCCCCCCC---C
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVT-----------LNGEVLESK-----LLKIISAYVMQDDLLFPML---T 61 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~-----------i~g~~~~~~-----~~~~~~~yv~Q~~~l~~~l---T 61 (592)
++|+||||||||||||+|+|.++|. +|+|. ++|+++... ..+..+++.+|.....|.+ |
T Consensus 102 ~gLvG~NGaGKSTLlkiL~G~l~p~--~G~i~~~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~~~q~~~~~p~~~~~t 179 (590)
T PRK13409 102 TGILGPNGIGKTTAVKILSGELIPN--LGDYEEEPSWDEVLKRFRGTELQNYFKKLYNGEIKVVHKPQYVDLIPKVFKGK 179 (590)
T ss_pred EEEECCCCCCHHHHHHHHhCCccCC--CccccCCCcHHHHHHHhCChHHHHHHHHHhccCcceeecccchhhhhhhhcch
Confidence 5899999999999999999998864 59997 899887431 1112345556654333332 9
Q ss_pred HHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCC
Q 048028 62 VEETLMFAAEFRLPRSVTKTKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSG 141 (592)
Q Consensus 62 V~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsg 141 (592)
|+|++... +.+++++++++.+||.+..|+.++ .|||||||||+||++|+.+|++|+|||||++
T Consensus 180 v~e~l~~~------------~~~~~~~~~l~~l~l~~~~~~~~~-----~LSgGe~qrv~ia~al~~~p~lllLDEPts~ 242 (590)
T PRK13409 180 VRELLKKV------------DERGKLDEVVERLGLENILDRDIS-----ELSGGELQRVAIAAALLRDADFYFFDEPTSY 242 (590)
T ss_pred HHHHHHhh------------hHHHHHHHHHHHcCCchhhcCChh-----hCCHHHHHHHHHHHHHhcCCCEEEEECCCCC
Confidence 99998631 234578999999999988777665 5999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHcCCEEEEEecCChhHHHhhhceEEEecCC
Q 048028 142 LDSTSAFMVVNVLQRIAKSGSIVIMSIHQPSYRILSLLDRLIILSHG 188 (592)
Q Consensus 142 LD~~~~~~i~~~l~~la~~g~tvi~~~H~~~~~i~~~~D~v~ll~~G 188 (592)
||+.++..+.+.|+++++ |+|||+++|+++ ++..++|++++|+++
T Consensus 243 LD~~~~~~l~~~i~~l~~-g~tvIivsHd~~-~l~~~~D~v~vl~~~ 287 (590)
T PRK13409 243 LDIRQRLNVARLIRELAE-GKYVLVVEHDLA-VLDYLADNVHIAYGE 287 (590)
T ss_pred CCHHHHHHHHHHHHHHHC-CCEEEEEeCCHH-HHHHhCCEEEEEeCC
Confidence 999999999999999988 999999999997 688999999999763
No 345
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=99.97 E-value=1.5e-29 Score=245.61 Aligned_cols=186 Identities=24% Similarity=0.334 Sum_probs=164.7
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCcccccceeEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCH
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLESKLLKIISAYVMQDDLLFPMLTVEETLMFAAEFRLPRSVTK 80 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~ 80 (592)
+||+|+||||||||||+|+|.++|+ +|+|.++|+-...- .-.-.+-|.+|.+||+.+-+.+. .+++
T Consensus 56 vGiiG~NGaGKSTLlkliaGi~~Pt--~G~v~v~G~v~~li---------~lg~Gf~pelTGreNi~l~~~~~---G~~~ 121 (249)
T COG1134 56 VGIIGHNGAGKSTLLKLIAGIYKPT--SGKVKVTGKVAPLI---------ELGAGFDPELTGRENIYLRGLIL---GLTR 121 (249)
T ss_pred EEEECCCCCcHHHHHHHHhCccCCC--CceEEEcceEehhh---------hcccCCCcccchHHHHHHHHHHh---CccH
Confidence 5899999999999999999999865 59999999743211 11123467799999999987654 5678
Q ss_pred HHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc
Q 048028 81 TKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVNVLQRIAKS 160 (592)
Q Consensus 81 ~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~la~~ 160 (592)
++.+++++++++.-+|.+..|.+| +.+|.||+-|++.|.+...+|++|++||-.+--|+.-+++-.+.++++.++
T Consensus 122 ~ei~~~~~eIieFaELG~fi~~Pv-----ktYSSGM~aRLaFsia~~~~pdILllDEvlavGD~~F~~K~~~rl~e~~~~ 196 (249)
T COG1134 122 KEIDEKVDEIIEFAELGDFIDQPV-----KTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLERLNELVEK 196 (249)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCch-----hhccHHHHHHHHHhhhhhcCCCEEEEehhhhcCCHHHHHHHHHHHHHHHHc
Confidence 899999999999999999997766 569999999999999999999999999999999999999999999999888
Q ss_pred CCEEEEEecCChhHHHhhhceEEEecCCeEeeecChhhHHHHHHHc
Q 048028 161 GSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNETPSNLAQFFAEF 206 (592)
Q Consensus 161 g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~~~~~~~f~~~ 206 (592)
++|+|+++|+++ .+.++|||+++|++|++...|+++++.+++.+.
T Consensus 197 ~~tiv~VSHd~~-~I~~~Cd~~i~l~~G~i~~~G~~~~vi~~Y~~~ 241 (249)
T COG1134 197 NKTIVLVSHDLG-AIKQYCDRAIWLEHGQIRMEGSPEEVIPAYEED 241 (249)
T ss_pred CCEEEEEECCHH-HHHHhcCeeEEEeCCEEEEcCCHHHHHHHHHHh
Confidence 899999999998 699999999999999999999999999888753
No 346
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.97 E-value=1e-29 Score=288.86 Aligned_cols=175 Identities=26% Similarity=0.371 Sum_probs=143.2
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCcccccceeEEEccCC-CCCCCCCHHHHHHHHHHccCCCCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLESKLLKIISAYVMQDD-LLFPMLTVEETLMFAAEFRLPRSVT 79 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~~~~~~~~~yv~Q~~-~l~~~lTV~E~l~f~~~l~~~~~~~ 79 (592)
++|+|||||||||||++|+|..+|. +|+|.+ |.++ .+||++|+. .+++++||.|++.+..... ...
T Consensus 348 ~~l~G~NGsGKSTLlk~l~G~~~p~--~G~i~~-~~~~-------~i~y~~q~~~~l~~~~tv~e~l~~~~~~~---~~~ 414 (635)
T PRK11147 348 IALIGPNGCGKTTLLKLMLGQLQAD--SGRIHC-GTKL-------EVAYFDQHRAELDPEKTVMDNLAEGKQEV---MVN 414 (635)
T ss_pred EEEECCCCCcHHHHHHHHhCCCCCC--CcEEEE-CCCc-------EEEEEeCcccccCCCCCHHHHHHhhcccc---ccc
Confidence 5899999999999999999998754 599998 4322 489999985 6899999999998753211 111
Q ss_pred HHHHHHHHHHHHHHcCCc-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 048028 80 KTKKQERVEALINQLGLR-SAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVNVLQRIA 158 (592)
Q Consensus 80 ~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~la 158 (592)
....++.++++.+++. +..++.++ .|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|+++
T Consensus 415 --~~~~~~~~~l~~~~l~~~~~~~~~~-----~LSgGekqRl~la~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~- 486 (635)
T PRK11147 415 --GRPRHVLGYLQDFLFHPKRAMTPVK-----ALSGGERNRLLLARLFLKPSNLLILDEPTNDLDVETLELLEELLDSY- 486 (635)
T ss_pred --chHHHHHHHHHhcCCCHHHHhChhh-----hCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC-
Confidence 1234678899999995 45666554 59999999999999999999999999999999999999999999876
Q ss_pred HcCCEEEEEecCChhHHHhhhceEEEec-CCeEe-eecChhhH
Q 048028 159 KSGSIVIMSIHQPSYRILSLLDRLIILS-HGQSV-YNETPSNL 199 (592)
Q Consensus 159 ~~g~tvi~~~H~~~~~i~~~~D~v~ll~-~G~~v-~~g~~~~~ 199 (592)
+.|||++|||.. .+..+||++++++ +|++. |.|+-++.
T Consensus 487 --~~tvi~vSHd~~-~~~~~~d~i~~l~~~g~i~~~~g~y~~y 526 (635)
T PRK11147 487 --QGTVLLVSHDRQ-FVDNTVTECWIFEGNGKIGRYVGGYHDA 526 (635)
T ss_pred --CCeEEEEECCHH-HHHHhcCEEEEEeCCCeEEEccCCHHHH
Confidence 459999999987 5888999999998 79875 45665544
No 347
>PLN03073 ABC transporter F family; Provisional
Probab=99.97 E-value=1.9e-29 Score=287.68 Aligned_cols=176 Identities=23% Similarity=0.376 Sum_probs=140.0
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCcccccceeEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCH
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLESKLLKIISAYVMQDDLLFPMLTVEETLMFAAEFRLPRSVTK 80 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~ 80 (592)
++|+||||||||||||+|+|+++|. +|+|.+++. ..+||++|+. .+.+++.++.........+ ..
T Consensus 538 i~LvG~NGsGKSTLLk~L~Gll~p~--~G~I~~~~~--------~~igyv~Q~~--~~~l~~~~~~~~~~~~~~~-~~-- 602 (718)
T PLN03073 538 IAMVGPNGIGKSTILKLISGELQPS--SGTVFRSAK--------VRMAVFSQHH--VDGLDLSSNPLLYMMRCFP-GV-- 602 (718)
T ss_pred EEEECCCCCcHHHHHHHHhCCCCCC--CceEEECCc--------eeEEEEeccc--cccCCcchhHHHHHHHhcC-CC--
Confidence 5899999999999999999998754 599998652 3589999975 3456666664332111111 11
Q ss_pred HHHHHHHHHHHHHcCCcc-cccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Q 048028 81 TKKQERVEALINQLGLRS-AAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVNVLQRIAK 159 (592)
Q Consensus 81 ~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~la~ 159 (592)
.+++++++++.+|+.+ ..++. +..|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|++.
T Consensus 603 --~~~~i~~~L~~~gl~~~~~~~~-----~~~LSgGqkqRvaLAraL~~~p~lLLLDEPT~~LD~~s~~~l~~~L~~~-- 673 (718)
T PLN03073 603 --PEQKLRAHLGSFGVTGNLALQP-----MYTLSGGQKSRVAFAKITFKKPHILLLDEPSNHLDLDAVEALIQGLVLF-- 673 (718)
T ss_pred --CHHHHHHHHHHCCCChHHhcCC-----ccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc--
Confidence 1356788999999974 45544 4569999999999999999999999999999999999999998888765
Q ss_pred cCCEEEEEecCChhHHHhhhceEEEecCCeEe-eecChhhHHHH
Q 048028 160 SGSIVIMSIHQPSYRILSLLDRLIILSHGQSV-YNETPSNLAQF 202 (592)
Q Consensus 160 ~g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v-~~g~~~~~~~~ 202 (592)
+ .|||++||++. .+..+||++++|++|+++ +.|+.++..++
T Consensus 674 ~-gtvIivSHd~~-~i~~~~drv~~l~~G~i~~~~g~~~~~~~~ 715 (718)
T PLN03073 674 Q-GGVLMVSHDEH-LISGSVDELWVVSEGKVTPFHGTFHDYKKT 715 (718)
T ss_pred C-CEEEEEECCHH-HHHHhCCEEEEEECCEEEEeCCCHHHHHHH
Confidence 3 49999999987 588899999999999998 78887765443
No 348
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.97 E-value=2.4e-29 Score=231.97 Aligned_cols=189 Identities=23% Similarity=0.379 Sum_probs=164.4
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCccc---ccceeEEEccCC--CCCCCCCHHHHHHHHHHccCC
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLESKL---LKIISAYVMQDD--LLFPMLTVEETLMFAAEFRLP 75 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~~~---~~~~~~yv~Q~~--~l~~~lTV~E~l~f~~~l~~~ 75 (592)
+||+|.||||||||.|+|+|.++|+ +|+|.+||+++.-.+ ..+.+-+++||+ .+.|.+.+.+-|....+ +.
T Consensus 42 laiIG~NGSGKSTLakMlaGmi~PT--sG~il~n~~~L~~~Dy~~R~k~IRMiFQDpnts~NPRl~iGqiLd~PL~--l~ 117 (267)
T COG4167 42 LAIIGENGSGKSTLAKMLAGMIEPT--SGEILINDHPLHFGDYSFRSKRIRMIFQDPNTSLNPRLRIGQILDFPLR--LN 117 (267)
T ss_pred EEEEccCCCcHhHHHHHHhcccCCC--CceEEECCccccccchHhhhhheeeeecCCccccChhhhhhhHhcchhh--hc
Confidence 4899999999999999999999864 599999999885432 235577899997 58888888888877654 44
Q ss_pred CCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHH
Q 048028 76 RSVTKTKKQERVEALINQLGLR-SAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVNVL 154 (592)
Q Consensus 76 ~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l 154 (592)
..+..+.+++++.+-++.+||- +.+| -+++-||-||||||++||||+.+|+|++.||...+||...+-++.++.
T Consensus 118 T~~~~~~R~~~i~~TL~~VGL~Pdhan-----~~~~~la~~QKQRVaLARALIL~P~iIIaDeAl~~LD~smrsQl~NL~ 192 (267)
T COG4167 118 TDLEPEQRRKQIFETLRMVGLLPDHAN-----YYPHMLAPGQKQRVALARALILRPKIIIADEALASLDMSMRSQLINLM 192 (267)
T ss_pred ccCChHHHHHHHHHHHHHhccCccccc-----cchhhcCchhHHHHHHHHHHhcCCcEEEehhhhhhccHHHHHHHHHHH
Confidence 5677888899999999999984 4443 345679999999999999999999999999999999999999999999
Q ss_pred HHHHHc-CCEEEEEecCChhHHHhhhceEEEecCCeEeeecChhhH
Q 048028 155 QRIAKS-GSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNETPSNL 199 (592)
Q Consensus 155 ~~la~~-g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~~~~ 199 (592)
-+|.++ |.+-|.++.+.. -+.++.|+|++|++|++++.|++.++
T Consensus 193 LeLQek~GiSyiYV~QhlG-~iKHi~D~viVM~EG~vvE~G~t~~v 237 (267)
T COG4167 193 LELQEKQGISYIYVTQHIG-MIKHISDQVLVMHEGEVVERGSTADV 237 (267)
T ss_pred HHHHHHhCceEEEEechhh-HhhhhcccEEEEecCceeecCChhhh
Confidence 999864 999999999987 58999999999999999999999876
No 349
>PLN03232 ABC transporter C family member; Provisional
Probab=99.96 E-value=8.3e-30 Score=312.22 Aligned_cols=174 Identities=29% Similarity=0.474 Sum_probs=143.6
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCcccccceeEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCH
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLESKLLKIISAYVMQDDLLFPMLTVEETLMFAAEFRLPRSVTK 80 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~ 80 (592)
++|+||||||||||+++|.|..++. +|.+. ..++.++||+|++.+++. |++||+.|+.. .+
T Consensus 646 vaIvG~sGSGKSTLl~lLlG~~~~~--~G~i~---------~~~~~Iayv~Q~p~Lf~g-TIreNI~fg~~------~~- 706 (1495)
T PLN03232 646 VAIVGGTGEGKTSLISAMLGELSHA--ETSSV---------VIRGSVAYVPQVSWIFNA-TVRENILFGSD------FE- 706 (1495)
T ss_pred EEEECCCCCcHHHHHHHHhCCCccc--CCCEE---------EecCcEEEEcCccccccc-cHHHHhhcCCc------cC-
Confidence 5899999999999999999998854 46552 345679999999999986 99999998631 12
Q ss_pred HHHHHHHHHHHHHcCCc-------ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHH
Q 048028 81 TKKQERVEALINQLGLR-------SAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVNV 153 (592)
Q Consensus 81 ~~~~~~v~~~l~~lgL~-------~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~ 153 (592)
+++++++++..+|. +..+|.||+. ...||||||||++||||+.++|+|++||||||+||++++.++++.
T Consensus 707 ---~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~-G~~LSGGQkQRIaLARAly~~~~IlLLDEptSaLD~~t~~~I~~~ 782 (1495)
T PLN03232 707 ---SERYWRAIDVTALQHDLDLLPGRDLTEIGER-GVNISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDS 782 (1495)
T ss_pred ---HHHHHHHHHHhCCHHHHHhCCCCCCceecCC-CcccCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHH
Confidence 24455566655543 3457888864 557999999999999999999999999999999999999988765
Q ss_pred -HHHHHHcCCEEEEEecCChhHHHhhhceEEEecCCeEeeecChhhHH
Q 048028 154 -LQRIAKSGSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNETPSNLA 200 (592)
Q Consensus 154 -l~~la~~g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~~~~~ 200 (592)
++.+ .+++|+|++||+++ ....+|+|++|++|+++..|+.+++.
T Consensus 783 ~l~~~-l~~kT~IlvTH~~~--~l~~aD~Ii~L~~G~i~~~Gt~~eL~ 827 (1495)
T PLN03232 783 CMKDE-LKGKTRVLVTNQLH--FLPLMDRIILVSEGMIKEEGTFAELS 827 (1495)
T ss_pred Hhhhh-hcCCEEEEEECChh--hHHhCCEEEEEeCCEEEEecCHHHHH
Confidence 5544 36899999999986 46789999999999999999998875
No 350
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.96 E-value=4.4e-30 Score=229.87 Aligned_cols=163 Identities=28% Similarity=0.420 Sum_probs=141.5
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCC-CceeEEEECCEecCcc-cccceeEEEccCCCCCCCCCHHHHHHHHHHccCCCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKE-SLQGAVTLNGEVLESK-LLKIISAYVMQDDLLFPMLTVEETLMFAAEFRLPRSV 78 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~-~~~G~I~i~g~~~~~~-~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~~~~~ 78 (592)
+-|||||||||||||..+.|.+.+. +.+|++.+|+++++.. ..+|.+|..+||+.+||+++|.|||.|+. |.++
T Consensus 31 vtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa~qRq~GiLFQD~lLFphlsVg~Nl~fAl----p~~~ 106 (213)
T COG4136 31 VTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQRQIGILFQDALLFPHLSVGQNLLFAL----PATL 106 (213)
T ss_pred EEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccchhhhheeeeecccccccccccccceEEec----Cccc
Confidence 3589999999999999999998753 5689999999998753 35678999999999999999999999863 4455
Q ss_pred CHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 048028 79 TKTKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVNVLQRIA 158 (592)
Q Consensus 79 ~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~la 158 (592)
..+.+++.++..+++.||....++. +..||||||-||++-|+|+..|+.++||||+|.||..-+.++.+..-.-+
T Consensus 107 KG~aRr~~a~aAL~~~gL~g~f~~d-----P~tlSGGQrARvaL~R~Lla~Pk~lLLDEPFS~LD~ALR~qfR~wVFs~~ 181 (213)
T COG4136 107 KGNARRNAANAALERSGLDGAFHQD-----PATLSGGQRARVALLRALLAQPKALLLDEPFSRLDVALRDQFRQWVFSEV 181 (213)
T ss_pred ccHHHHhhHHHHHHHhccchhhhcC-----hhhcCcchHHHHHHHHHHHhCcceeeeCCchhHHHHHHHHHHHHHHHHHH
Confidence 5567778899999999999877654 45799999999999999999999999999999999999999998766544
Q ss_pred -HcCCEEEEEecCCh
Q 048028 159 -KSGSIVIMSIHQPS 172 (592)
Q Consensus 159 -~~g~tvi~~~H~~~ 172 (592)
..|..+|++|||..
T Consensus 182 r~agiPtv~VTHD~~ 196 (213)
T COG4136 182 RAAGIPTVQVTHDLQ 196 (213)
T ss_pred HhcCCCeEEEecccc
Confidence 45899999999976
No 351
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=6.9e-30 Score=237.58 Aligned_cols=159 Identities=29% Similarity=0.421 Sum_probs=140.6
Q ss_pred EEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCcc--cccceeEEEccCCCCCCCCCHHHHHHHHHHccCCCCCC
Q 048028 2 AILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLESK--LLKIISAYVMQDDLLFPMLTVEETLMFAAEFRLPRSVT 79 (592)
Q Consensus 2 aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~~--~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~ 79 (592)
-|.||||||||||||+|+|+..|. +|+|.++|.+++.. .+++..-|+-..+.+=+.|||.|||.|-.++...
T Consensus 32 ~i~G~NG~GKTtLLRilaGLl~p~--~G~v~~~~~~i~~~~~~~~~~l~yLGH~~giK~eLTa~ENL~F~~~~~~~---- 105 (209)
T COG4133 32 QITGPNGAGKTTLLRILAGLLRPD--AGEVYWQGEPIQNVRESYHQALLYLGHQPGIKTELTALENLHFWQRFHGS---- 105 (209)
T ss_pred EEECCCCCcHHHHHHHHHcccCCC--CCeEEecCCCCccchhhHHHHHHHhhccccccchhhHHHHHHHHHHHhCC----
Confidence 588999999999999999999865 59999999988642 3556678999999999999999999998776422
Q ss_pred HHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Q 048028 80 KTKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVNVLQRIAK 159 (592)
Q Consensus 80 ~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~la~ 159 (592)
...+.+.+.++.+||....|.+++ .||-||||||+|||-+++.+++.+||||+++||......+-.++..-+.
T Consensus 106 --~~~~~i~~Al~~vgL~g~~dlp~~-----~LSAGQqRRvAlArL~ls~~pLWiLDEP~taLDk~g~a~l~~l~~~H~~ 178 (209)
T COG4133 106 --GNAATIWEALAQVGLAGLEDLPVG-----QLSAGQQRRVALARLWLSPAPLWILDEPFTALDKEGVALLTALMAAHAA 178 (209)
T ss_pred --CchhhHHHHHHHcCcccccccchh-----hcchhHHHHHHHHHHHcCCCCceeecCcccccCHHHHHHHHHHHHHHhc
Confidence 123568899999999999988776 5999999999999999999999999999999999999999999999999
Q ss_pred cCCEEEEEecCChh
Q 048028 160 SGSIVIMSIHQPSY 173 (592)
Q Consensus 160 ~g~tvi~~~H~~~~ 173 (592)
+|..||.+||||..
T Consensus 179 ~GGiVllttHq~l~ 192 (209)
T COG4133 179 QGGIVLLTTHQPLP 192 (209)
T ss_pred CCCEEEEecCCccC
Confidence 99999999999974
No 352
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=99.96 E-value=1.8e-29 Score=233.75 Aligned_cols=116 Identities=33% Similarity=0.559 Sum_probs=106.7
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCcccccceeEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCH
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLESKLLKIISAYVMQDDLLFPMLTVEETLMFAAEFRLPRSVTK 80 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~ 80 (592)
++|+||||||||||+++|+|..++. +|+|.++|+ +.++|++|
T Consensus 29 ~~i~G~nGsGKStLl~~l~G~~~~~--~G~i~~~~~--------~~i~~~~~---------------------------- 70 (144)
T cd03221 29 IGLVGRNGAGKSTLLKLIAGELEPD--EGIVTWGST--------VKIGYFEQ---------------------------- 70 (144)
T ss_pred EEEECCCCCCHHHHHHHHcCCCCCC--ceEEEECCe--------EEEEEEcc----------------------------
Confidence 4799999999999999999998754 599999984 35789998
Q ss_pred HHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc
Q 048028 81 TKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVNVLQRIAKS 160 (592)
Q Consensus 81 ~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~la~~ 160 (592)
||+|||||++|||+|+.+|++++|||||+|||+.++..+.+.++++
T Consensus 71 -------------------------------lS~G~~~rv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~--- 116 (144)
T cd03221 71 -------------------------------LSGGEKMRLALAKLLLENPNLLLLDEPTNHLDLESIEALEEALKEY--- 116 (144)
T ss_pred -------------------------------CCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHc---
Confidence 9999999999999999999999999999999999999999999987
Q ss_pred CCEEEEEecCChhHHHhhhceEEEecCCe
Q 048028 161 GSIVIMSIHQPSYRILSLLDRLIILSHGQ 189 (592)
Q Consensus 161 g~tvi~~~H~~~~~i~~~~D~v~ll~~G~ 189 (592)
++|+++++|+++ ++.+++|++++|++|+
T Consensus 117 ~~til~~th~~~-~~~~~~d~v~~l~~g~ 144 (144)
T cd03221 117 PGTVILVSHDRY-FLDQVATKIIELEDGK 144 (144)
T ss_pred CCEEEEEECCHH-HHHHhCCEEEEEeCCC
Confidence 479999999987 6888999999999985
No 353
>PLN03130 ABC transporter C family member; Provisional
Probab=99.96 E-value=1.1e-29 Score=311.38 Aligned_cols=173 Identities=28% Similarity=0.464 Sum_probs=145.2
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCce-eEEEECCEecCcccccceeEEEccCCCCCCCCCHHHHHHHHHHccCCCCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQ-GAVTLNGEVLESKLLKIISAYVMQDDLLFPMLTVEETLMFAAEFRLPRSVT 79 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~-G~I~i~g~~~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~ 79 (592)
++|+||||||||||+++|.|.+++ .+ |+|.+ ++.++||+|++.+++. |++||+.|+.. .
T Consensus 646 vaIvG~sGSGKSTLl~lLlG~~~~--~~GG~I~l----------~~~Iayv~Q~p~Lfng-TIreNI~fg~~------~- 705 (1622)
T PLN03130 646 VAIVGSTGEGKTSLISAMLGELPP--RSDASVVI----------RGTVAYVPQVSWIFNA-TVRDNILFGSP------F- 705 (1622)
T ss_pred EEEECCCCCCHHHHHHHHHHhhcc--CCCceEEE----------cCeEEEEcCccccCCC-CHHHHHhCCCc------c-
Confidence 589999999999999999999874 56 89875 3468999999999986 99999998632 1
Q ss_pred HHHHHHHHHHHHHHcCCcc-------cccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHH
Q 048028 80 KTKKQERVEALINQLGLRS-------AAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVN 152 (592)
Q Consensus 80 ~~~~~~~v~~~l~~lgL~~-------~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~ 152 (592)
.+++++++++..+|.+ ..+|.||+. ...||||||||++||||+.++|+|++||||||+||+++++++++
T Consensus 706 ---d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~-G~~LSGGQKQRIaLARAly~~~~IlLLDEptSALD~~~~~~I~~ 781 (1622)
T PLN03130 706 ---DPERYERAIDVTALQHDLDLLPGGDLTEIGER-GVNISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFD 781 (1622)
T ss_pred ---cHHHHHHHHHHhCcHHHHHhCCCcccccccCC-CCCCCHHHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHH
Confidence 2345666777666543 347888864 55799999999999999999999999999999999999988865
Q ss_pred -HHHHHHHcCCEEEEEecCChhHHHhhhceEEEecCCeEeeecChhhHH
Q 048028 153 -VLQRIAKSGSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNETPSNLA 200 (592)
Q Consensus 153 -~l~~la~~g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~~~~~ 200 (592)
.++.+. +|+|+|++||+++ ....+|+|++|++|+++..|+.+++.
T Consensus 782 ~~l~~~l-~~kTvIlVTH~l~--~l~~aD~Ii~L~~G~i~e~Gt~~eL~ 827 (1622)
T PLN03130 782 KCIKDEL-RGKTRVLVTNQLH--FLSQVDRIILVHEGMIKEEGTYEELS 827 (1622)
T ss_pred HHhhHHh-cCCEEEEEECCHh--HHHhCCEEEEEeCCEEEEeCCHHHHH
Confidence 566553 5899999999985 57789999999999999999998874
No 354
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=99.96 E-value=1.2e-29 Score=288.97 Aligned_cols=169 Identities=20% Similarity=0.275 Sum_probs=135.8
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCcccccceeEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCH
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLESKLLKIISAYVMQDDLLFPMLTVEETLMFAAEFRLPRSVTK 80 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~ 80 (592)
++|+||||||||||+|+|+|+.++. +|+|.+++ ++.++||+|++.+++. |++||+.++....... ..
T Consensus 481 ~~IvG~nGsGKSTLl~lL~Gl~~~~--~G~i~~~~--------~~~i~~v~Q~~~l~~~-tv~eni~~~~~~~~~~--~~ 547 (659)
T TIGR00954 481 LLICGPNGCGKSSLFRILGELWPVY--GGRLTKPA--------KGKLFYVPQRPYMTLG-TLRDQIIYPDSSEDMK--RR 547 (659)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCCC--CCeEeecC--------CCcEEEECCCCCCCCc-CHHHHHhcCCChhhhh--cc
Confidence 4899999999999999999998754 59998764 4568999999998887 9999998753211000 00
Q ss_pred HHHHHHHHHHHHHcCCccccccccc----CCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHH
Q 048028 81 TKKQERVEALINQLGLRSAAKTFIG----DERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVNVLQR 156 (592)
Q Consensus 81 ~~~~~~v~~~l~~lgL~~~~~~~vg----~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~ 156 (592)
...+++++++++.+++++..++..| .+....||||||||++|||+|+++|++++|||||+|||+.+...+.+.+++
T Consensus 548 ~~~~~~i~~~l~~~~l~~~~~~~~g~~~~~~~~~~LSgGqkQRl~iARal~~~p~illLDEpts~LD~~~~~~l~~~l~~ 627 (659)
T TIGR00954 548 GLSDKDLEQILDNVQLTHILEREGGWSAVQDWMDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLCRE 627 (659)
T ss_pred CCCHHHHHHHHHHcCCHHHHhhcCCcccccccccCCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHH
Confidence 1123567889999999876554322 113467999999999999999999999999999999999999999998876
Q ss_pred HHHcCCEEEEEecCChhHHHhhhceEEEecC
Q 048028 157 IAKSGSIVIMSIHQPSYRILSLLDRLIILSH 187 (592)
Q Consensus 157 la~~g~tvi~~~H~~~~~i~~~~D~v~ll~~ 187 (592)
.|+|+|+++|+++ ..+.+|++++|+.
T Consensus 628 ---~~~tvI~isH~~~--~~~~~d~il~l~~ 653 (659)
T TIGR00954 628 ---FGITLFSVSHRKS--LWKYHEYLLYMDG 653 (659)
T ss_pred ---cCCEEEEEeCchH--HHHhCCEEEEEeC
Confidence 3899999999987 3578999999973
No 355
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=2.5e-30 Score=265.52 Aligned_cols=187 Identities=29% Similarity=0.470 Sum_probs=157.5
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCc---ccccceeEEEccCCCCCCCCCHHHHHHHHHHccCCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLES---KLLKIISAYVMQDDLLFPMLTVEETLMFAAEFRLPRS 77 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~---~~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~~~~ 77 (592)
+||+||||+||||++++|-..+++. +|.|.+||+++.. ...|+.+|.||||..||.+ |...|+.++. ..
T Consensus 292 vAiVg~SG~gKsTI~rllfRFyD~~--sG~I~id~qdir~vtq~slR~aIg~VPQDtvLFND-ti~yni~ygr-----~~ 363 (497)
T COG5265 292 VAIVGESGAGKSTILRLLFRFYDVN--SGSITIDGQDIRDVTQQSLRRAIGIVPQDTVLFND-TIAYNIKYGR-----PD 363 (497)
T ss_pred EEEEeCCCCcHHHHHHHHHHHhCCc--CceEEEcchhHHHhHHHHHHHHhCcCcccceehhh-hHHHHHhccC-----cc
Confidence 5899999999999999999998854 5999999998753 5678889999999999986 9999998763 12
Q ss_pred CCHHHHHH-----HHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHH
Q 048028 78 VTKTKKQE-----RVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVN 152 (592)
Q Consensus 78 ~~~~~~~~-----~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~ 152 (592)
.+.++..+ ++...++ .+.+..|+.||+++.+ |||||||||+|||+++++|+||++||.||+||..+.+++..
T Consensus 364 at~eev~aaa~~aqi~~fi~--~lP~gy~t~Vgerglk-lSggekqrvaiar~ilk~p~il~~deatsaldt~te~~iq~ 440 (497)
T COG5265 364 ATAEEVGAAAEAAQIHDFIQ--SLPEGYDTGVGERGLK-LSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQA 440 (497)
T ss_pred ccHHHHHHHHHHhhhhHHHH--hCchhhhcccchheee-ccCchHHHHHHHHHHhcCCCEEEEehhhhHhhhhHHHHHHH
Confidence 34444332 2233333 3567789999986665 99999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCEEEEEecCChhHHHhhhceEEEecCCeEeeecChhhHHH
Q 048028 153 VLQRIAKSGSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNETPSNLAQ 201 (592)
Q Consensus 153 ~l~~la~~g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~~~~~~ 201 (592)
.|++++ .|+|.+++.|..+. + --+|.+++|++|++++.|..+++.+
T Consensus 441 ~l~~~~-~~rttlviahrlst-i-~~adeiivl~~g~i~erg~h~~ll~ 486 (497)
T COG5265 441 ALREVS-AGRTTLVIAHRLST-I-IDADEIIVLDNGRIVERGTHEELLA 486 (497)
T ss_pred HHHHHh-CCCeEEEEeehhhh-c-cCCceEEEeeCCEEEecCcHHHHHH
Confidence 999997 58999999999973 3 4589999999999999999998864
No 356
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=4.4e-29 Score=283.30 Aligned_cols=179 Identities=23% Similarity=0.351 Sum_probs=137.0
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCcccccceeEEEccCCCCCCCCCHHHHHHHHH----------
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLESKLLKIISAYVMQDDLLFPMLTVEETLMFAA---------- 70 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~---------- 70 (592)
+||+||||||||||||+|+|..+|+ +|+|.++|.. .++|++|+...+ ..|+.+.+.-..
T Consensus 30 v~LvG~NGsGKSTLLkiL~G~~~pd--~G~I~~~~~~--------~i~~~~q~~~~~-~~~~~~~v~~~~~~~~~l~~~~ 98 (638)
T PRK10636 30 VGLVGKNGCGKSTLLALLKNEISAD--GGSYTFPGNW--------QLAWVNQETPAL-PQPALEYVIDGDREYRQLEAQL 98 (638)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCCC--CceEEecCCC--------EEEEEecCCCCC-CCCHHHHHHHhhHHHHHHHHHH
Confidence 5899999999999999999998754 5999998742 267888864333 245544432110
Q ss_pred -------------HccC-CCCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEE
Q 048028 71 -------------EFRL-PRSVTKTKKQERVEALINQLGLR-SAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFL 135 (592)
Q Consensus 71 -------------~l~~-~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllL 135 (592)
.+.. .......+.+++++++++.+|+. +..+..++ .|||||||||+||++|+.+|++|||
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~-----~LSgGerqRv~LA~aL~~~P~lLLL 173 (638)
T PRK10636 99 HDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQLERPVS-----DFSGGWRMRLNLAQALICRSDLLLL 173 (638)
T ss_pred HHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCchhhcCchh-----hcCHHHHHHHHHHHHHccCCCEEEE
Confidence 0000 00001112346788999999997 45666655 5999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCChhHHHhhhceEEEecCCeEe-eecChhhH
Q 048028 136 DEPTSGLDSTSAFMVVNVLQRIAKSGSIVIMSIHQPSYRILSLLDRLIILSHGQSV-YNETPSNL 199 (592)
Q Consensus 136 DEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v-~~g~~~~~ 199 (592)
||||+|||+.+...+.+.|+++ +.|||+++||+. .+.++||++++|++|+++ |.|+.+..
T Consensus 174 DEPtn~LD~~~~~~L~~~L~~~---~~tviivsHd~~-~l~~~~d~i~~L~~G~i~~~~g~~~~~ 234 (638)
T PRK10636 174 DEPTNHLDLDAVIWLEKWLKSY---QGTLILISHDRD-FLDPIVDKIIHIEQQSLFEYTGNYSSF 234 (638)
T ss_pred cCCCCcCCHHHHHHHHHHHHhC---CCeEEEEeCCHH-HHHHhcCEEEEEeCCEEEEecCCHHHH
Confidence 9999999999999999998875 569999999987 588899999999999985 67766543
No 357
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.96 E-value=3.9e-29 Score=305.91 Aligned_cols=177 Identities=23% Similarity=0.447 Sum_probs=140.8
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCcccccceeEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCH
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLESKLLKIISAYVMQDDLLFPMLTVEETLMFAAEFRLPRSVTK 80 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~ 80 (592)
++|+|||||||||||++|+|..++. +|+|.++| .++||+|++.+++. ||+||+.|+... ..
T Consensus 455 ~~I~G~~GsGKSTLl~~l~G~~~~~--~G~i~~~g----------~iayv~Q~~~l~~~-Ti~eNI~~g~~~------~~ 515 (1490)
T TIGR01271 455 LAVAGSTGSGKSSLLMMIMGELEPS--EGKIKHSG----------RISFSPQTSWIMPG-TIKDNIIFGLSY------DE 515 (1490)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCCC--CceEEECC----------EEEEEeCCCccCCc-cHHHHHHhcccc------ch
Confidence 5899999999999999999998854 59999988 38999999999885 999999986421 11
Q ss_pred HHHHHHHH--HHHHHcCC-cccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHH-HHH
Q 048028 81 TKKQERVE--ALINQLGL-RSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVNV-LQR 156 (592)
Q Consensus 81 ~~~~~~v~--~~l~~lgL-~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~-l~~ 156 (592)
...++..+ .+.+.+.. .+..+|.+|+ .+..|||||||||+||||++.+|+++||||||+|||+.++..+.+. +++
T Consensus 516 ~~~~~~~~~~~L~~~l~~l~~g~~t~vg~-~g~~LSgGqkqRi~lARAl~~~~~illLDep~saLD~~~~~~i~~~~l~~ 594 (1490)
T TIGR01271 516 YRYTSVIKACQLEEDIALFPEKDKTVLGE-GGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCK 594 (1490)
T ss_pred HHHHHHHHHHhHHHHHHhccccccccccC-cCCCcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence 11111111 12222221 2223466765 4678999999999999999999999999999999999999999974 666
Q ss_pred HHHcCCEEEEEecCChhHHHhhhceEEEecCCeEeeecChhhHH
Q 048028 157 IAKSGSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNETPSNLA 200 (592)
Q Consensus 157 la~~g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~~~~~ 200 (592)
+. +|+|+|++||+++. + ..+|++++|++|+++..|+.+++.
T Consensus 595 ~~-~~~tvilvtH~~~~-~-~~ad~ii~l~~g~i~~~g~~~~l~ 635 (1490)
T TIGR01271 595 LM-SNKTRILVTSKLEH-L-KKADKILLLHEGVCYFYGTFSELQ 635 (1490)
T ss_pred Hh-cCCeEEEEeCChHH-H-HhCCEEEEEECCEEEEEcCHHHHH
Confidence 64 48999999999973 4 569999999999999999998875
No 358
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.96 E-value=1.2e-28 Score=231.47 Aligned_cols=127 Identities=37% Similarity=0.655 Sum_probs=114.0
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCc---ccccceeEEEccCCCCCCCCCHHHHHHHHHHccCCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLES---KLLKIISAYVMQDDLLFPMLTVEETLMFAAEFRLPRS 77 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~---~~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~~~~ 77 (592)
++|+||||||||||+++|+|.+++ .+|+|.++|.++.. ...++.++|++|
T Consensus 28 ~~i~G~nGsGKStll~~l~g~~~~--~~G~i~~~~~~~~~~~~~~~~~~i~~~~q------------------------- 80 (157)
T cd00267 28 VALVGPNGSGKSTLLRAIAGLLKP--TSGEILIDGKDIAKLPLEELRRRIGYVPQ------------------------- 80 (157)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCC--CccEEEECCEEcccCCHHHHHhceEEEee-------------------------
Confidence 479999999999999999999875 46999999987653 234456788888
Q ss_pred CCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 048028 78 VTKTKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVNVLQRI 157 (592)
Q Consensus 78 ~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~l 157 (592)
|||||+||++||++++.+|++++|||||+|||..++..+.+.++++
T Consensus 81 ----------------------------------lS~G~~~r~~l~~~l~~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~ 126 (157)
T cd00267 81 ----------------------------------LSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLREL 126 (157)
T ss_pred ----------------------------------CCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999
Q ss_pred HHcCCEEEEEecCChhHHHhhhceEEEecCCe
Q 048028 158 AKSGSIVIMSIHQPSYRILSLLDRLIILSHGQ 189 (592)
Q Consensus 158 a~~g~tvi~~~H~~~~~i~~~~D~v~ll~~G~ 189 (592)
.++++|+++++|+++ ++...+|+++++++|+
T Consensus 127 ~~~~~tii~~sh~~~-~~~~~~d~i~~l~~g~ 157 (157)
T cd00267 127 AEEGRTVIIVTHDPE-LAELAADRVIVLKDGK 157 (157)
T ss_pred HHCCCEEEEEeCCHH-HHHHhCCEEEEEeCcC
Confidence 877899999999987 5778889999999875
No 359
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.96 E-value=1.4e-28 Score=279.61 Aligned_cols=177 Identities=27% Similarity=0.401 Sum_probs=134.7
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCcccccceeEEEccCCCCCCCCCHHHHHHH------------
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLESKLLKIISAYVMQDDLLFPMLTVEETLMF------------ 68 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~f------------ 68 (592)
++|+||||||||||||+|+|..+|+ +|+|.++|.. .++|++|.+......+|.+++..
T Consensus 32 v~LvG~NGsGKSTLLriiaG~~~p~--~G~I~~~~~~--------~~~~l~q~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 101 (635)
T PRK11147 32 VCLVGRNGAGKSTLMKILNGEVLLD--DGRIIYEQDL--------IVARLQQDPPRNVEGTVYDFVAEGIEEQAEYLKRY 101 (635)
T ss_pred EEEECCCCCCHHHHHHHHcCCCCCC--CeEEEeCCCC--------EEEEeccCCCCCCCCCHHHHHHHhhHHHHHHHHHH
Confidence 5899999999999999999998754 5999998731 14666665433333455554321
Q ss_pred ------------------HHHcc--CCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhh
Q 048028 69 ------------------AAEFR--LPRSVTKTKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIH 128 (592)
Q Consensus 69 ------------------~~~l~--~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~ 128 (592)
...+. .. .....+.+++++++++.+|+.. ++. +..|||||||||+||++|+.
T Consensus 102 ~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~l~~lgl~~--~~~-----~~~LSgGekqRv~LAraL~~ 173 (635)
T PRK11147 102 HDISHLVETDPSEKNLNELAKLQEQLD-HHNLWQLENRINEVLAQLGLDP--DAA-----LSSLSGGWLRKAALGRALVS 173 (635)
T ss_pred HHHHHHhccCchHHHHHHHHHHHHHHH-hcCcccHHHHHHHHHHhCCCCC--CCc-----hhhcCHHHHHHHHHHHHHhc
Confidence 11000 00 0001123467889999999963 444 45699999999999999999
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCChhHHHhhhceEEEecCCeEe-eecChhhH
Q 048028 129 DPILLFLDEPTSGLDSTSAFMVVNVLQRIAKSGSIVIMSIHQPSYRILSLLDRLIILSHGQSV-YNETPSNL 199 (592)
Q Consensus 129 ~p~lllLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v-~~g~~~~~ 199 (592)
+|+||||||||+|||+.++..+.+.|+++. .|||+++|++. .+.+.||+++.|++|+++ |.|+.++.
T Consensus 174 ~P~lLLLDEPt~~LD~~~~~~L~~~L~~~~---~tvlivsHd~~-~l~~~~d~i~~L~~G~i~~~~g~~~~~ 241 (635)
T PRK11147 174 NPDVLLLDEPTNHLDIETIEWLEGFLKTFQ---GSIIFISHDRS-FIRNMATRIVDLDRGKLVSYPGNYDQY 241 (635)
T ss_pred CCCEEEEcCCCCccCHHHHHHHHHHHHhCC---CEEEEEeCCHH-HHHHhcCeEEEEECCEEEEecCCHHHH
Confidence 999999999999999999999999999873 59999999987 588899999999999997 56877654
No 360
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.96 E-value=1.1e-28 Score=302.65 Aligned_cols=178 Identities=26% Similarity=0.424 Sum_probs=142.2
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCcccccceeEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCH
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLESKLLKIISAYVMQDDLLFPMLTVEETLMFAAEFRLPRSVTK 80 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~ 80 (592)
++|+|||||||||||++|+|.+++. +|+|.++| .++||+|++.+++ .||+||+.|+.. .++
T Consensus 667 v~IvG~~GsGKSTLl~~l~g~~~~~--~G~i~~~g----------~i~yv~Q~~~l~~-~Ti~eNI~~g~~------~~~ 727 (1522)
T TIGR00957 667 VAVVGQVGCGKSSLLSALLAEMDKV--EGHVHMKG----------SVAYVPQQAWIQN-DSLRENILFGKA------LNE 727 (1522)
T ss_pred EEEECCCCCCHHHHHHHHhCCCccC--CcEEEECC----------EEEEEcCCccccC-CcHHHHhhcCCc------cCH
Confidence 5899999999999999999998854 59999987 3899999998875 699999988632 122
Q ss_pred HHHHHHHH--HHHHHcCC-cccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 048028 81 TKKQERVE--ALINQLGL-RSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVNVLQRI 157 (592)
Q Consensus 81 ~~~~~~v~--~~l~~lgL-~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~l 157 (592)
++.++.++ ++.+.++. .+..+|.+|+ .+..||||||||++||||+..+|++++||||||+||+.++..+.+.+.+.
T Consensus 728 ~~~~~~~~~~~l~~~l~~~~~g~~t~ig~-~g~~LSGGQkqRiaLARAl~~~~~illLDEp~saLD~~~~~~i~~~l~~~ 806 (1522)
T TIGR00957 728 KYYQQVLEACALLPDLEILPSGDRTEIGE-KGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGP 806 (1522)
T ss_pred HHHHHHHHHhCCHHHHHhcCCCCCceecC-CCCCCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhh
Confidence 22111111 12333333 2234567765 46789999999999999999999999999999999999999999998754
Q ss_pred H--HcCCEEEEEecCChhHHHhhhceEEEecCCeEeeecChhhHH
Q 048028 158 A--KSGSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNETPSNLA 200 (592)
Q Consensus 158 a--~~g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~~~~~ 200 (592)
. .+++|+|++||+++ ....+|++++|++|+++..|+.+++.
T Consensus 807 ~~~~~~~tvIlvTH~~~--~l~~~D~ii~l~~G~i~~~g~~~~l~ 849 (1522)
T TIGR00957 807 EGVLKNKTRILVTHGIS--YLPQVDVIIVMSGGKISEMGSYQELL 849 (1522)
T ss_pred hhhhcCCEEEEEeCChh--hhhhCCEEEEecCCeEEeeCCHHHHH
Confidence 2 35799999999996 34569999999999999999998875
No 361
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.95 E-value=4.4e-28 Score=221.98 Aligned_cols=187 Identities=28% Similarity=0.466 Sum_probs=146.0
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCE---ecC-----cc----cccceeEEEccCCC--C----CCCCCH
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGE---VLE-----SK----LLKIISAYVMQDDL--L----FPMLTV 62 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~---~~~-----~~----~~~~~~~yv~Q~~~--l----~~~lTV 62 (592)
++|+|.|||||||||++|++++.|+ .|+|.+.-. +.+ +. ..|...|+|.|++. + -..-.+
T Consensus 35 LgiVGESGSGKtTLL~~is~rl~p~--~G~v~Y~~r~~~~~dl~~msEaeRR~L~RTeWG~VhQnP~DGLRm~VSAG~Ni 112 (258)
T COG4107 35 LGIVGESGSGKTTLLKCISGRLTPD--AGTVTYRMRDGQPRDLYTMSEAERRRLLRTEWGFVHQNPRDGLRMQVSAGGNI 112 (258)
T ss_pred EEEEecCCCcHHhHHHHHhcccCCC--CCeEEEEcCCCCchhHhhhchHHHHHHhhhccceeecCccccceeeeccCCcc
Confidence 4899999999999999999999865 499988542 221 11 12334699999863 2 222234
Q ss_pred HHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCC
Q 048028 63 EETLMFAAEFRLPRSVTKTKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGL 142 (592)
Q Consensus 63 ~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgL 142 (592)
.|-++-... | .-...++...++++++.++... + ++.++..|||++||+.|||-|++.|+++|+||||-||
T Consensus 113 GERlma~G~-R-----HYG~iR~~a~~WL~~VEI~~~R---i-DD~PrtFSGGMqQRLQiARnLVt~PrLvfMDEPTGGL 182 (258)
T COG4107 113 GERLMAIGA-R-----HYGNIRAEAQDWLEEVEIDLDR---I-DDLPRTFSGGMQQRLQIARNLVTRPRLVFMDEPTGGL 182 (258)
T ss_pred chhHHhhhh-h-----hhhhHHHHHHHHHHhcccCccc---c-cCcccccchHHHHHHHHHHHhccCCceEEecCCCCCc
Confidence 454432111 1 1224556788999999887532 2 4578899999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHc-CCEEEEEecCChhHHHhhhceEEEecCCeEeeecChhhHH
Q 048028 143 DSTSAFMVVNVLQRIAKS-GSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNETPSNLA 200 (592)
Q Consensus 143 D~~~~~~i~~~l~~la~~-g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~~~~~ 200 (592)
|..-+..++++++.|..+ |..++++|||.. -+.-++||.++|++|+++..|-.+.+.
T Consensus 183 DVSVQARLLDllrgLv~~l~la~viVTHDl~-VarLla~rlmvmk~g~vve~GLTDrvL 240 (258)
T COG4107 183 DVSVQARLLDLLRGLVRELGLAVVIVTHDLA-VARLLADRLMVMKQGQVVESGLTDRVL 240 (258)
T ss_pred chhhHHHHHHHHHHHHHhcCceEEEEechhH-HHHHhhhcceeecCCCEeccccccccc
Confidence 999999999999999876 889999999987 366679999999999999999887663
No 362
>PTZ00243 ABC transporter; Provisional
Probab=99.95 E-value=6.7e-28 Score=295.37 Aligned_cols=176 Identities=28% Similarity=0.418 Sum_probs=136.1
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCcccccceeEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCH
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLESKLLKIISAYVMQDDLLFPMLTVEETLMFAAEFRLPRSVTK 80 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~ 80 (592)
++|+|||||||||||++|+|..++. +|+|.++ +.++|++|++.+++ .||+||+.|... ...
T Consensus 689 ~~IiG~nGsGKSTLL~~i~G~~~~~--~G~i~~~----------~~i~yv~Q~~~l~~-~Tv~enI~~~~~------~~~ 749 (1560)
T PTZ00243 689 TVVLGATGSGKSTLLQSLLSQFEIS--EGRVWAE----------RSIAYVPQQAWIMN-ATVRGNILFFDE------EDA 749 (1560)
T ss_pred EEEECCCCCcHHHHHHHHhcCCCCC--CcEEEEC----------CeEEEEeCCCccCC-CcHHHHHHcCCh------hhH
Confidence 5899999999999999999998754 5999763 35899999998875 699999988421 111
Q ss_pred HHHH-----HHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHH
Q 048028 81 TKKQ-----ERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVNVLQ 155 (592)
Q Consensus 81 ~~~~-----~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~ 155 (592)
+..+ ...++.++.+ .+..++.+| +.+..|||||||||+|||||+.+|++++|||||++||+.++..+++.+.
T Consensus 750 ~~~~~~~~~~~l~~~l~~l--~~g~~t~i~-~~g~~LSGGQkqRvaLARAl~~~p~illLDEP~saLD~~~~~~i~~~~~ 826 (1560)
T PTZ00243 750 ARLADAVRVSQLEADLAQL--GGGLETEIG-EKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECF 826 (1560)
T ss_pred HHHHHHHHHhhhHHHHHHh--hccchHHhc-CCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHH
Confidence 1111 1223334443 111234454 3467899999999999999999999999999999999999999887543
Q ss_pred HHHHcCCEEEEEecCChhHHHhhhceEEEecCCeEeeecChhhHH
Q 048028 156 RIAKSGSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNETPSNLA 200 (592)
Q Consensus 156 ~la~~g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~~~~~ 200 (592)
....+|+|+|++||+++ ....+|++++|++|++++.|+.+++.
T Consensus 827 ~~~~~~~TvIlvTH~~~--~~~~ad~ii~l~~G~i~~~G~~~~l~ 869 (1560)
T PTZ00243 827 LGALAGKTRVLATHQVH--VVPRADYVVALGDGRVEFSGSSADFM 869 (1560)
T ss_pred HHhhCCCEEEEEeCCHH--HHHhCCEEEEEECCEEEEecCHHHHH
Confidence 22235899999999986 34689999999999999999998764
No 363
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.95 E-value=2.3e-27 Score=239.41 Aligned_cols=180 Identities=26% Similarity=0.365 Sum_probs=138.0
Q ss_pred CEEECCCCCcHHHHHHHHh-----CCCC-----CC---------CceeEEEECCEecCccc-------------ccc---
Q 048028 1 MAILGASGAGKTTLMDALA-----GRIE-----KE---------SLQGAVTLNGEVLESKL-------------LKI--- 45 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~-----g~~~-----~~---------~~~G~I~i~g~~~~~~~-------------~~~--- 45 (592)
++|.|+||||||||++.+. .... +. ...--|.++..++.... .|+
T Consensus 24 ~~vtGvSGsGKStL~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~vdq~pi~~~~rs~~~ty~~~~~~ir~~fC 103 (261)
T cd03271 24 TCVTGVSGSGKSSLINDTLYPALARRLHLKKEQPGNHDRIEGLEHIDKVIVIDQSPIGRTPRSNPATYTGVFDEIRELFC 103 (261)
T ss_pred EEEECCCCCchHHHHHHHHHHHHHHHhcccccCCCcccccccccccCceEEecCCcCCCCCCCcHHHHHHHHHHHHHhcC
Confidence 5799999999999998551 1100 10 11123677777664210 000
Q ss_pred -------------eeEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcc-cccccccCCCCCC
Q 048028 46 -------------ISAYVMQDDLLFPMLTVEETLMFAAEFRLPRSVTKTKKQERVEALINQLGLRS-AAKTFIGDERHRG 111 (592)
Q Consensus 46 -------------~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~ 111 (592)
.+.|..++...+..|||.|++.|...++ ..+++.++++.+||.+ ..+.. .+.
T Consensus 104 ~~C~G~r~~~~~l~~~~~g~~i~~v~~ltv~e~~~~~~~~~---------~~~~~~~~L~~vgL~~l~l~~~-----~~~ 169 (261)
T cd03271 104 EVCKGKRYNRETLEVRYKGKSIADVLDMTVEEALEFFENIP---------KIARKLQTLCDVGLGYIKLGQP-----ATT 169 (261)
T ss_pred ccccccccCHHHHhcCcCCCCHHHHhcCCHHHHHHHHHhhh---------hHHHHHHHHHHcCCchhhhcCc-----ccc
Confidence 1345566666678999999999876532 1346778999999986 34443 456
Q ss_pred CCHHHHHHHHHHHHHhhC---CcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCChhHHHhhhceEEEe---
Q 048028 112 VSGGERRRVSIGIHIIHD---PILLFLDEPTSGLDSTSAFMVVNVLQRIAKSGSIVIMSIHQPSYRILSLLDRLIIL--- 185 (592)
Q Consensus 112 LSgGerqRv~ia~~L~~~---p~lllLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~H~~~~~i~~~~D~v~ll--- 185 (592)
||||||||+.||++|+.+ |++++|||||+|||+.....+.+.|++++++|.|||+++|+++ .+ +.+|+++.|
T Consensus 170 LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~~~g~tvIiitH~~~-~i-~~aD~ii~Lgp~ 247 (261)
T cd03271 170 LSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVVIEHNLD-VI-KCADWIIDLGPE 247 (261)
T ss_pred CCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HH-HhCCEEEEecCC
Confidence 999999999999999996 7999999999999999999999999999988999999999996 34 679999999
Q ss_pred ---cCCeEeeecCh
Q 048028 186 ---SHGQSVYNETP 196 (592)
Q Consensus 186 ---~~G~~v~~g~~ 196 (592)
++|++++.|++
T Consensus 248 ~g~~~G~iv~~Gt~ 261 (261)
T cd03271 248 GGDGGGQVVASGTP 261 (261)
T ss_pred cCCCCCEEEEeCCC
Confidence 78999999874
No 364
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=99.95 E-value=1.1e-27 Score=233.21 Aligned_cols=155 Identities=19% Similarity=0.251 Sum_probs=121.8
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCC-------CceeEEEECCEecCcccccceeEEEccCCCCCCCCCHHHHHHHHHHcc
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKE-------SLQGAVTLNGEVLESKLLKIISAYVMQDDLLFPMLTVEETLMFAAEFR 73 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~-------~~~G~I~i~g~~~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~ 73 (592)
++|+||||||||||+++|+|+.++. ...|++.++|++......++.++||+|++..+ |. ..
T Consensus 25 ~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~vfq~~~~~----------~~--~~ 92 (197)
T cd03278 25 TAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKPANFAEVTLTFDNSDGR----------YS--II 92 (197)
T ss_pred EEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCCCCceEEEEEEEEcCCCc----------ee--EE
Confidence 4799999999999999999987532 12357888887764433456789999998765 11 00
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHh----hCCcEEEEeCCCCCCCHHHHHH
Q 048028 74 LPRSVTKTKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHII----HDPILLFLDEPTSGLDSTSAFM 149 (592)
Q Consensus 74 ~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~----~~p~lllLDEPtsgLD~~~~~~ 149 (592)
..++++++++. .+..++. ++.||||||||++||++++ .+|++++|||||+|||+..+..
T Consensus 93 ---------~~~~~~~~l~~---~~~~~~~-----~~~LS~G~kqrl~la~~l~~~~~~~~~illlDEP~~~LD~~~~~~ 155 (197)
T cd03278 93 ---------SQGDVSEIIEA---PGKKVQR-----LSLLSGGEKALTALALLFAIFRVRPSPFCVLDEVDAALDDANVER 155 (197)
T ss_pred ---------ehhhHHHHHhC---CCccccc-----hhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeCCcccCCHHHHHH
Confidence 12456777776 3344443 4569999999999999997 4679999999999999999999
Q ss_pred HHHHHHHHHHcCCEEEEEecCChhHHHhhhceEEEecC
Q 048028 150 VVNVLQRIAKSGSIVIMSIHQPSYRILSLLDRLIILSH 187 (592)
Q Consensus 150 i~~~l~~la~~g~tvi~~~H~~~~~i~~~~D~v~ll~~ 187 (592)
+.+.|+++++ +.|||++||++. . .+.+|+++.+..
T Consensus 156 l~~~l~~~~~-~~tiIiitH~~~-~-~~~~d~v~~~~~ 190 (197)
T cd03278 156 FARLLKEFSK-ETQFIVITHRKG-T-MEAADRLYGVTM 190 (197)
T ss_pred HHHHHHHhcc-CCEEEEEECCHH-H-HhhcceEEEEEe
Confidence 9999999975 689999999986 3 478999999975
No 365
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.95 E-value=1.2e-26 Score=231.07 Aligned_cols=100 Identities=25% Similarity=0.396 Sum_probs=89.3
Q ss_pred HHHHHHcCCcc-cccccccCCCCCCCCHHHHHHHHHHHHHhhCC--cEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEE
Q 048028 88 EALINQLGLRS-AAKTFIGDERHRGVSGGERRRVSIGIHIIHDP--ILLFLDEPTSGLDSTSAFMVVNVLQRIAKSGSIV 164 (592)
Q Consensus 88 ~~~l~~lgL~~-~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p--~lllLDEPtsgLD~~~~~~i~~~l~~la~~g~tv 164 (592)
.+.++.++|.+ ..+.. +..|||||||||+||++|+.+| ++++|||||+|||+.++..+.+.|++++++|.|+
T Consensus 118 ~~~l~~~~l~~~~~~~~-----~~~LSgG~~qrv~laral~~~p~~~llllDEPt~gLD~~~~~~l~~~l~~~~~~g~ti 192 (226)
T cd03270 118 LGFLVDVGLGYLTLSRS-----APTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHPRDNDRLIETLKRLRDLGNTV 192 (226)
T ss_pred HHHHHHCCCCcccccCc-----cCcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCccCCCHHHHHHHHHHHHHHHhCCCEE
Confidence 56899999975 35444 4569999999999999999998 5999999999999999999999999998889999
Q ss_pred EEEecCChhHHHhhhceEEEe------cCCeEeeec
Q 048028 165 IMSIHQPSYRILSLLDRLIIL------SHGQSVYNE 194 (592)
Q Consensus 165 i~~~H~~~~~i~~~~D~v~ll------~~G~~v~~g 194 (592)
|+++|+++ ++ +.||++++| ++|+++++|
T Consensus 193 i~itH~~~-~~-~~~d~i~~l~~~~~~~~G~iv~~g 226 (226)
T cd03270 193 LVVEHDED-TI-RAADHVIDIGPGAGVHGGEIVAQG 226 (226)
T ss_pred EEEEeCHH-HH-HhCCEEEEeCCCccccCCEEEecC
Confidence 99999997 44 689999999 899999876
No 366
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.94 E-value=5.9e-27 Score=256.81 Aligned_cols=178 Identities=30% Similarity=0.439 Sum_probs=141.9
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCcccccceeEEEccCCCCCCCCCHHHHHHHHHHc-c------
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLESKLLKIISAYVMQDDLLFPMLTVEETLMFAAEF-R------ 73 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l-~------ 73 (592)
+||+|+||||||||||+|+|...+. +|+|...+. -.++|++|+..+.+..||.+.+.-+..- .
T Consensus 32 iGLvG~NGaGKSTLLkilaG~~~~~--~G~i~~~~~--------~~v~~l~Q~~~~~~~~tv~~~v~~~~~~~~~~~~~~ 101 (530)
T COG0488 32 IGLVGRNGAGKSTLLKILAGELEPD--SGEVTRPKG--------LRVGYLSQEPPLDPEKTVLDYVIEGFGELRELLAEL 101 (530)
T ss_pred EEEECCCCCCHHHHHHHHcCCCcCC--CCeEeecCC--------ceEEEeCCCCCcCCCccHHHHHHhhhHHHHHHHHHH
Confidence 5899999999999999999998754 599987431 2479999999999999999988654310 0
Q ss_pred ------CCCC--------------CCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEE
Q 048028 74 ------LPRS--------------VTKTKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILL 133 (592)
Q Consensus 74 ------~~~~--------------~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~ll 133 (592)
++.. ...-+.+.+++.++..+|+.+. ++.++ .||||||.||+||++|+.+|++|
T Consensus 102 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~-~~~~~-----~LSGG~r~Rv~LA~aL~~~pDlL 175 (530)
T COG0488 102 EEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDE-DRPVS-----SLSGGWRRRVALARALLEEPDLL 175 (530)
T ss_pred HHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcc-cCchh-----hcCHHHHHHHHHHHHHhcCCCEE
Confidence 0000 0001123577888888999876 66665 49999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCChhHHHhhhceEEEecCCeE-eeecChhh
Q 048028 134 FLDEPTSGLDSTSAFMVVNVLQRIAKSGSIVIMSIHQPSYRILSLLDRLIILSHGQS-VYNETPSN 198 (592)
Q Consensus 134 lLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~-v~~g~~~~ 198 (592)
||||||+.||..+..-+-+.|++. +| |+|++|||-. -+-+.|++|+-++.|++ .|.|.-+.
T Consensus 176 LLDEPTNHLD~~~i~WLe~~L~~~--~g-tviiVSHDR~-FLd~V~t~I~~ld~g~l~~y~Gny~~ 237 (530)
T COG0488 176 LLDEPTNHLDLESIEWLEDYLKRY--PG-TVIVVSHDRY-FLDNVATHILELDRGKLTPYKGNYSS 237 (530)
T ss_pred EEcCCCcccCHHHHHHHHHHHHhC--CC-cEEEEeCCHH-HHHHHhhheEEecCCceeEecCCHHH
Confidence 999999999999999998888854 46 9999999965 57889999999999976 56665543
No 367
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.94 E-value=7.1e-27 Score=274.31 Aligned_cols=174 Identities=31% Similarity=0.520 Sum_probs=148.2
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCcccccceeEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCH
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLESKLLKIISAYVMQDDLLFPMLTVEETLMFAAEFRLPRSVTK 80 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~ 80 (592)
+||+||-|||||+||.+|.|.++ ..+|+|.++|. ++||+|++.++.. |||||+.|+..+
T Consensus 550 vaVvG~vGsGKSSLL~AiLGEm~--~~sG~v~v~gs----------iaYv~Q~pWI~ng-TvreNILFG~~~-------- 608 (1381)
T KOG0054|consen 550 VAVVGPVGSGKSSLLSAILGEMP--KLSGSVAVNGS----------VAYVPQQPWIQNG-TVRENILFGSPY-------- 608 (1381)
T ss_pred EEEECCCCCCHHHHHHHHhcCcc--cccceEEEcCe----------EEEeccccHhhCC-cHHHhhhcCccc--------
Confidence 58999999999999999999987 45699999985 7999999998876 999999997533
Q ss_pred HHHHHHHHHHHHHcCCccc-------ccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHH
Q 048028 81 TKKQERVEALINQLGLRSA-------AKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVNV 153 (592)
Q Consensus 81 ~~~~~~v~~~l~~lgL~~~-------~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~ 153 (592)
++++.+++++.-.|++. -.|-||+ ++-.||||||||+++|||+-+|.+|++||.|.|++|++....+.+.
T Consensus 609 --d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGE-rGinLSGGQKqRIsLARAVY~~adIYLLDDplSAVDahvg~~if~~ 685 (1381)
T KOG0054|consen 609 --DEERYDKVIKACALKKDLEILPFGDLTEIGE-RGINLSGGQKQRISLARAVYQDADIYLLDDPLSAVDAHVGKHIFEE 685 (1381)
T ss_pred --cHHHHHHHHHHccCHhHHhhcCCCCcceecC-CccCCcHhHHHHHHHHHHHhccCCEEEEcCcchhhhHhhhHHHHHH
Confidence 24567777776666543 2466775 4456999999999999999999999999999999999999988865
Q ss_pred HHHHHHcCCEEEEEecCChhHHHhhhceEEEecCCeEeeecChhhHH
Q 048028 154 LQRIAKSGSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNETPSNLA 200 (592)
Q Consensus 154 l~~la~~g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~~~~~ 200 (592)
.-+..-+++|+|++|||.+ ....+|.|++|++|++...|+.+|+.
T Consensus 686 ci~~~L~~KT~ILVTHql~--~L~~ad~Iivl~~G~I~~~Gty~el~ 730 (1381)
T KOG0054|consen 686 CIRGLLRGKTVILVTHQLQ--FLPHADQIIVLKDGKIVESGTYEELL 730 (1381)
T ss_pred HHHhhhcCCEEEEEeCchh--hhhhCCEEEEecCCeEecccCHHHHH
Confidence 4444446899999999864 78899999999999999999999986
No 368
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=99.94 E-value=6e-28 Score=221.34 Aligned_cols=182 Identities=25% Similarity=0.384 Sum_probs=155.1
Q ss_pred EEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCcc---cccceeEEEccCCCCCCCCCHHHHHHHHHHccCCCCC
Q 048028 2 AILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLESK---LLKIISAYVMQDDLLFPMLTVEETLMFAAEFRLPRSV 78 (592)
Q Consensus 2 aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~~---~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~~~~~ 78 (592)
-++|||||||||||-.++|.++ .+|+|.++|.++... ...+..+|..|+..-...|.|.+.|... .
T Consensus 29 HliGPNGaGKSTLLA~lAGm~~---~sGsi~~~G~~l~~~~~~eLArhRAYLsQqq~p~f~mpV~~YL~L~--------q 97 (248)
T COG4138 29 HLVGPNGAGKSTLLARMAGMTS---GSGSIQFAGQPLEAWSATELARHRAYLSQQQTPPFAMPVWHYLTLH--------Q 97 (248)
T ss_pred EEECCCCccHHHHHHHHhCCCC---CCceEEECCcchhHHhHhHHHHHHHHHhhccCCcchhhhhhhhhhc--------C
Confidence 3799999999999999999975 459999999998642 3455668999987766678898887653 2
Q ss_pred CHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhh-----CC--cEEEEeCCCCCCCHHHHHHHH
Q 048028 79 TKTKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIH-----DP--ILLFLDEPTSGLDSTSAFMVV 151 (592)
Q Consensus 79 ~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~-----~p--~lllLDEPtsgLD~~~~~~i~ 151 (592)
+.++....++++.+.++|++...+. ..+|||||-|||-+|...+. || ++|+||||.++||......+-
T Consensus 98 P~~~~a~~i~~i~~~L~l~DKL~Rs-----~~qLSGGEWQRVRLAav~LQv~Pd~NP~~~LLllDEP~~~LDvAQ~~aLd 172 (248)
T COG4138 98 PDKTRTELLNDVAGALALDDKLGRS-----TNQLSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSALD 172 (248)
T ss_pred chHHHHHHHHHHHhhhcccchhhhh-----hhhcCcccceeeEEeEEEEEecCCCCccceeEEecCCCcchhHHHHHHHH
Confidence 3466677889999999998876544 45799999999999887653 34 699999999999999999999
Q ss_pred HHHHHHHHcCCEEEEEecCChhHHHhhhceEEEecCCeEeeecChhhHH
Q 048028 152 NVLQRIAKSGSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNETPSNLA 200 (592)
Q Consensus 152 ~~l~~la~~g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~~~~~ 200 (592)
.+|.+++.+|.+|||+.||.+ ...+.+|++.+|++|++...|..+|+.
T Consensus 173 rll~~~c~~G~~vims~HDLN-hTLrhA~~~wLL~rG~l~~~G~~~eVl 220 (248)
T COG4138 173 RLLSALCQQGLAIVMSSHDLN-HTLRHAHRAWLLKRGKLLASGRREEVL 220 (248)
T ss_pred HHHHHHHhCCcEEEEeccchh-hHHHHHHHHHHHhcCeEEeecchhhhc
Confidence 999999999999999999998 588999999999999999999998873
No 369
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=99.94 E-value=3.3e-27 Score=216.04 Aligned_cols=121 Identities=40% Similarity=0.700 Sum_probs=107.2
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCc---ccccceeEEEccCCCCCCCCCHHHHHHHHHHccCCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLES---KLLKIISAYVMQDDLLFPMLTVEETLMFAAEFRLPRS 77 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~---~~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~~~~ 77 (592)
++|+||||||||||+++|+|..++ .+|+|.++|+++.. ...++.++|++|++.+++.+||+||
T Consensus 14 ~~i~G~nGsGKStLl~~l~g~~~~--~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~~~------------ 79 (137)
T PF00005_consen 14 VAIVGPNGSGKSTLLKALAGLLPP--DSGSILINGKDISDIDIEELRRRIGYVPQDPQLFPGLTVREN------------ 79 (137)
T ss_dssp EEEEESTTSSHHHHHHHHTTSSHE--SEEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBHHHH------------
T ss_pred EEEEccCCCccccceeeecccccc--cccccccccccccccccccccccccccccccccccccccccc------------
Confidence 489999999999999999999875 56999999999875 3466779999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCC
Q 048028 78 VTKTKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTS 140 (592)
Q Consensus 78 ~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPts 140 (592)
...++++++++.+++.+..++.++. ....|||||||||+||++|+.+|++++|||||+
T Consensus 80 ----~~~~~~~~~l~~l~~~~~~~~~~~~-~~~~LS~Ge~~rl~la~al~~~~~llllDEPt~ 137 (137)
T PF00005_consen 80 ----ESDERIEEVLKKLGLEDLLDRKIGQ-RASSLSGGEKQRLALARALLKNPKLLLLDEPTN 137 (137)
T ss_dssp ----HHHHHHHHHHHHTTHGGGTGSBGTS-CGGGSCHHHHHHHHHHHHHHTTSSEEEEESTTT
T ss_pred ----ccccccccccccccccccccccccc-ccchhhHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 2346689999999999888888754 447899999999999999999999999999996
No 370
>PLN03073 ABC transporter F family; Provisional
Probab=99.94 E-value=4e-27 Score=268.68 Aligned_cols=185 Identities=21% Similarity=0.232 Sum_probs=128.8
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCC-CCceeEEEECCEecCccc-----------------ccceeEEEccCCCCCCCCCH
Q 048028 1 MAILGASGAGKTTLMDALAGRIEK-ESLQGAVTLNGEVLESKL-----------------LKIISAYVMQDDLLFPMLTV 62 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~-~~~~G~I~i~g~~~~~~~-----------------~~~~~~yv~Q~~~l~~~lTV 62 (592)
+||+|||||||||||++|+|+... .+.+|+|.+.++.+.... .++.++|++|++.+... ++
T Consensus 206 ~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~~~~Q~~~g~~~t~~~~v~~~~~~~~~~~~~~~~~~~q~~~l~~~-~~ 284 (718)
T PLN03073 206 YGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQEVVGDDTTALQCVLNTDIERTQLLEEEAQLVAQQRELEFE-TE 284 (718)
T ss_pred EEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEEEEeccCCCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhc-cc
Confidence 589999999999999999997411 134578865443321000 11224556664332211 11
Q ss_pred HHHHHHHHHccCCCCCCHH-------------------HHHHHHHHHHHHcCCc-ccccccccCCCCCCCCHHHHHHHHH
Q 048028 63 EETLMFAAEFRLPRSVTKT-------------------KKQERVEALINQLGLR-SAAKTFIGDERHRGVSGGERRRVSI 122 (592)
Q Consensus 63 ~E~l~f~~~l~~~~~~~~~-------------------~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSgGerqRv~i 122 (592)
.++... ... ...++. ..++++.++++.+|+. +..++.+ ..|||||||||+|
T Consensus 285 ~~~~~~-~~~---~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r~~~~L~~lgl~~~~~~~~~-----~~LSgG~k~rv~L 355 (718)
T PLN03073 285 TGKGKG-ANK---DGVDKDAVSQRLEEIYKRLELIDAYTAEARAASILAGLSFTPEMQVKAT-----KTFSGGWRMRIAL 355 (718)
T ss_pred cccccc-ccc---cccchHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHCCCChHHHhCch-----hhCCHHHHHHHHH
Confidence 111100 000 001111 2345677788888885 3344444 4699999999999
Q ss_pred HHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCChhHHHhhhceEEEecCCeEe-eecChhhH
Q 048028 123 GIHIIHDPILLFLDEPTSGLDSTSAFMVVNVLQRIAKSGSIVIMSIHQPSYRILSLLDRLIILSHGQSV-YNETPSNL 199 (592)
Q Consensus 123 a~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v-~~g~~~~~ 199 (592)
|++|+.+|++|||||||++||+.+...+.+.|+++ +.|||+++|+.. .+.+.||++++|++|++. |.|+.++.
T Consensus 356 A~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~---~~tviivsHd~~-~l~~~~d~i~~l~~g~i~~~~g~~~~~ 429 (718)
T PLN03073 356 ARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKW---PKTFIVVSHARE-FLNTVVTDILHLHGQKLVTYKGDYDTF 429 (718)
T ss_pred HHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHc---CCEEEEEECCHH-HHHHhCCEEEEEECCEEEEeCCCHHHH
Confidence 99999999999999999999999999999999886 679999999986 588899999999999996 77876654
No 371
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.94 E-value=3e-26 Score=230.46 Aligned_cols=173 Identities=16% Similarity=0.304 Sum_probs=122.0
Q ss_pred CEEECCCCCcHHHHHHHHhCC----------------CCCCCcee--------EEEECCEe----cC--cccccceeEEE
Q 048028 1 MAILGASGAGKTTLMDALAGR----------------IEKESLQG--------AVTLNGEV----LE--SKLLKIISAYV 50 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~----------------~~~~~~~G--------~I~i~g~~----~~--~~~~~~~~~yv 50 (592)
++|+||||||||||+++|++. +.++ +| +|.+++.+ +. ....++.++|+
T Consensus 26 ~~i~GpNGsGKStll~ai~~~l~~~~~~~~~~~~~~li~~~--~~~~~~~~~v~i~~~~~~~~~~~~~~~~~i~r~ig~~ 103 (243)
T cd03272 26 NVVVGRNGSGKSNFFAAIRFVLSDEYTHLREEQRQALLHEG--SGPSVMSAYVEIIFDNSDNRFPIDKEEVRLRRTIGLK 103 (243)
T ss_pred EEEECCCCCCHHHHHHHHHHHHcCchhhhhhhhHHHhEeCC--CCCCCceEEEEEEEEcCCCccCCCCCEEEEEEEEECC
Confidence 479999999999999999843 2222 23 55555531 11 22355668999
Q ss_pred ccCCCCCC-CCCHHHHHHHHHHccCCCCCCH-HHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhh
Q 048028 51 MQDDLLFP-MLTVEETLMFAAEFRLPRSVTK-TKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIH 128 (592)
Q Consensus 51 ~Q~~~l~~-~lTV~E~l~f~~~l~~~~~~~~-~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~ 128 (592)
+|+..+++ ..|..|...+...+........ .....++. +.+++.+..+. .++.||||||||++||++|+.
T Consensus 104 ~~~~~l~~~~~t~~ei~~~l~~~gl~~~~~~~~~~qg~i~---~l~~l~~~~~~-----~~~~lS~G~~~r~~la~~l~~ 175 (243)
T cd03272 104 KDEYFLDKKNVTKNDVMNLLESAGFSRSNPYYIVPQGKIN---SLTNMKQDEQQ-----EMQQLSGGQKSLVALALIFAI 175 (243)
T ss_pred CCEEEECCeEcCHHHHHHHHHHcCCCCCCCcEEEEcCchH---Hhhhccccccc-----cccccCHHHHHHHHHHHHHHH
Confidence 99888877 4677776666554432211000 00012233 33444443433 345799999999999999974
Q ss_pred ----CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCChhHHHhhhceEEEec
Q 048028 129 ----DPILLFLDEPTSGLDSTSAFMVVNVLQRIAKSGSIVIMSIHQPSYRILSLLDRLIILS 186 (592)
Q Consensus 129 ----~p~lllLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~H~~~~~i~~~~D~v~ll~ 186 (592)
+|+++++||||+|||+.++..+.+.|+++++ ++++|+++|++ ++.+++|++++|.
T Consensus 176 ~~~~~~~illlDEp~~~ld~~~~~~~~~~l~~~~~-~~~ii~~~h~~--~~~~~~d~i~~l~ 234 (243)
T cd03272 176 QKCDPAPFYLFDEIDAALDAQYRTAVANMIKELSD-GAQFITTTFRP--ELLEVADKFYGVK 234 (243)
T ss_pred hccCCCCEEEEECCccCCCHHHHHHHHHHHHHHhC-CCEEEEEecCH--HHHhhCCEEEEEE
Confidence 5899999999999999999999999999865 78888888886 4789999999986
No 372
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.93 E-value=8.6e-27 Score=235.75 Aligned_cols=181 Identities=19% Similarity=0.249 Sum_probs=134.5
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCE-ecCc-----ccccceeEEEccCC---------CCCCCCCHHHH
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGE-VLES-----KLLKIISAYVMQDD---------LLFPMLTVEET 65 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~-~~~~-----~~~~~~~~yv~Q~~---------~l~~~lTV~E~ 65 (592)
++|+||||||||||+++|++.+.+. ..|++...|. ++-. ...+..+++++|++ .+.|.+||.++
T Consensus 28 ~~IvG~NGsGKStll~Ai~~ll~~~-~~~~~r~~~~~~li~~~~~~~~~~~~v~~~fq~~~~~~~~~~~~~~~~ltV~r~ 106 (251)
T cd03273 28 NAITGLNGSGKSNILDAICFVLGIT-NLSTVRASNLQDLIYKRGQAGITKASVTIVFDNSDKSQSPIGFENYPEITVTRQ 106 (251)
T ss_pred EEEECCCCCCHHHHHHHHHHHhccc-ccccccccCHHHHhhcCCCCCCcEEEEEEEEEcCCcccCcccccCCceEEEEEE
Confidence 4899999999999999999998643 2367777765 3211 11233678999985 35678899998
Q ss_pred HHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccc---------------cccCCCCCCCCHHHHHHHHHHHHHh---
Q 048028 66 LMFAAEFRLPRSVTKTKKQERVEALINQLGLRSAAKT---------------FIGDERHRGVSGGERRRVSIGIHII--- 127 (592)
Q Consensus 66 l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~---------------~vg~~~~~~LSgGerqRv~ia~~L~--- 127 (592)
+......+...+ .+....+++.++++.+|+...... ..-+..++.||||||||++||++|+
T Consensus 107 I~~~~~~~~~in-~~~~~~~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~~~~~~~~~~~~~lS~G~~qr~~la~al~~~~ 185 (251)
T cd03273 107 IVLGGTNKYLIN-GHRAQQQRVQDLFQSVQLNVNNPHFLIMQGRITKVLNMGGVWKESLTELSGGQRSLVALSLILALLL 185 (251)
T ss_pred EEcCCceEEEEC-CEEeeHHHHHHHHHHcCCCCCCceEEEeehHHHHHHHhHHhhcccccccCHHHHHHHHHHHHHHHhh
Confidence 865432110000 123345789999999998611000 0112345679999999999999998
Q ss_pred -hCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCChhHHHhhhceEEEec
Q 048028 128 -HDPILLFLDEPTSGLDSTSAFMVVNVLQRIAKSGSIVIMSIHQPSYRILSLLDRLIILS 186 (592)
Q Consensus 128 -~~p~lllLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~H~~~~~i~~~~D~v~ll~ 186 (592)
.+|+++++||||+|||+.....+.+.|++++ +|.++|+++|++ ++.+.+|+++-+.
T Consensus 186 ~~~~~illlDEPt~~ld~~~~~~~~~~l~~~~-~g~~ii~iSH~~--~~~~~~d~v~~~~ 242 (251)
T cd03273 186 FKPAPMYILDEVDAALDLSHTQNIGRMIKTHF-KGSQFIVVSLKE--GMFNNANVLFRTR 242 (251)
T ss_pred ccCCCEEEEeCCCcCCCHHHHHHHHHHHHHHc-CCCEEEEEECCH--HHHHhCCEEEEEE
Confidence 5789999999999999999999999999985 488999999995 5788999998875
No 373
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.93 E-value=5.6e-25 Score=235.81 Aligned_cols=188 Identities=27% Similarity=0.465 Sum_probs=158.2
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCcc----cccceeEEEccC---CCCCCCCCHHHHHHHHHHcc
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLESK----LLKIISAYVMQD---DLLFPMLTVEETLMFAAEFR 73 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~~----~~~~~~~yv~Q~---~~l~~~lTV~E~l~f~~~l~ 73 (592)
++|-|-=|||+|-|+++|.|..++ .+|+|.+||+++... ..+..++|||.| +.++..++|+||+.++..-+
T Consensus 288 lGiaGLvGaGRTEl~~~lfG~~~~--~~G~i~l~G~~v~~~sp~~Ai~~Gi~~v~EDRk~~Gl~l~~sI~~Ni~l~~l~~ 365 (500)
T COG1129 288 LGIAGLVGAGRTELARALFGARPA--SSGEILLDGKPVRIRSPRDAIKAGIAYVPEDRKSEGLVLDMSIAENITLASLRR 365 (500)
T ss_pred EEEeccccCCHHHHHHHHhCCCcC--CCceEEECCEEccCCCHHHHHHcCCEeCCcccccCcCcCCCcHHHheehHhhhh
Confidence 478899999999999999997553 469999999987643 344568999998 46899999999998883222
Q ss_pred CC-C-CCCHHHHHHHHHHHHHHcCCcc-cccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHH
Q 048028 74 LP-R-SVTKTKKQERVEALINQLGLRS-AAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMV 150 (592)
Q Consensus 74 ~~-~-~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i 150 (592)
.. . -.+....++.+++..+.|++.. ..++.+ ..||||.+|||.||+.|..+|++|+|||||.|.|..++.+|
T Consensus 366 ~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~v-----~~LSGGNQQKVvlarwL~~~p~vLilDEPTRGIDVGAK~eI 440 (500)
T COG1129 366 FSRRGLIDRRKERALAERYIRRLRIKTPSPEQPI-----GTLSGGNQQKVVLARWLATDPKVLILDEPTRGIDVGAKAEI 440 (500)
T ss_pred hccccccChHHHHHHHHHHHHhcCcccCCccchh-----hcCCchhhhhHHHHHHHhcCCCEEEECCCCcCcccchHHHH
Confidence 11 1 3566666788999999999953 334444 46999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCEEEEEecCChhHHHhhhceEEEecCCeEeeecCh
Q 048028 151 VNVLQRIAKSGSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNETP 196 (592)
Q Consensus 151 ~~~l~~la~~g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~ 196 (592)
.++|+++|++|++||+++.+.. |+..+||||++|++|+++..=+.
T Consensus 441 y~li~~lA~~G~ail~iSSElp-Ell~~~DRIlVm~~Gri~~e~~~ 485 (500)
T COG1129 441 YRLIRELAAEGKAILMISSELP-ELLGLSDRILVMREGRIVGELDR 485 (500)
T ss_pred HHHHHHHHHCCCEEEEEeCChH-HHHhhCCEEEEEECCEEEEEecc
Confidence 9999999999999999999986 79999999999999999864333
No 374
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=99.93 E-value=9e-26 Score=221.09 Aligned_cols=156 Identities=19% Similarity=0.308 Sum_probs=118.6
Q ss_pred CEEECCCCCcHHHHHHHHh----CCCCCCCceeEEEECCEecCcccccceeEEEccCC-----CCCCCCCHHHHHHHHHH
Q 048028 1 MAILGASGAGKTTLMDALA----GRIEKESLQGAVTLNGEVLESKLLKIISAYVMQDD-----LLFPMLTVEETLMFAAE 71 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~----g~~~~~~~~G~I~i~g~~~~~~~~~~~~~yv~Q~~-----~l~~~lTV~E~l~f~~~ 71 (592)
++|+|||||||||||++|. |..++. +|.+..+...+.....+..+++++|++ .....+|+.|++.+.
T Consensus 25 ~~i~G~NGsGKTTLl~ai~~~l~G~~~~~--~~~~~~~~~~i~~~~~~~~v~~~f~~~~~~~~~v~r~~~~~~~~~~~-- 100 (204)
T cd03240 25 TLIVGQNGAGKTTIIEALKYALTGELPPN--SKGGAHDPKLIREGEVRAQVKLAFENANGKKYTITRSLAILENVIFC-- 100 (204)
T ss_pred EEEECCCCCCHHHHHHHHHHHHcCCCCcc--cccccchHHHHhCCCCcEEEEEEEEeCCCCEEEEEEEhhHhhceeee--
Confidence 4799999999999999995 886643 355542222233334455688999987 445556888887542
Q ss_pred ccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHH------HHHHHHHhhCCcEEEEeCCCCCCCHH
Q 048028 72 FRLPRSVTKTKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRR------VSIGIHIIHDPILLFLDEPTSGLDST 145 (592)
Q Consensus 72 l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqR------v~ia~~L~~~p~lllLDEPtsgLD~~ 145 (592)
.. +.+++.+ ++.++.||+||||| ++||++++.+|+++++||||++||+.
T Consensus 101 -------~~----~~~~~~~--------------~~~~~~LS~G~~~~~~la~rlala~al~~~p~illlDEP~~~LD~~ 155 (204)
T cd03240 101 -------HQ----GESNWPL--------------LDMRGRCSGGEKVLASLIIRLALAETFGSNCGILALDEPTTNLDEE 155 (204)
T ss_pred -------ch----HHHHHHH--------------hcCccccCccHHHHHHHHHHHHHHHHhccCCCEEEEcCCccccCHH
Confidence 11 1233333 23345699999996 78999999999999999999999999
Q ss_pred HHH-HHHHHHHHHHHc-CCEEEEEecCChhHHHhhhceEEEecC
Q 048028 146 SAF-MVVNVLQRIAKS-GSIVIMSIHQPSYRILSLLDRLIILSH 187 (592)
Q Consensus 146 ~~~-~i~~~l~~la~~-g~tvi~~~H~~~~~i~~~~D~v~ll~~ 187 (592)
.+. .+.+.|++++++ |.++|+++|++. ..+.+|+++.|.+
T Consensus 156 ~~~~~l~~~l~~~~~~~~~~iiiitH~~~--~~~~~d~i~~l~~ 197 (204)
T cd03240 156 NIEESLAEIIEERKSQKNFQLIVITHDEE--LVDAADHIYRVEK 197 (204)
T ss_pred HHHHHHHHHHHHHHhccCCEEEEEEecHH--HHhhCCEEEEEee
Confidence 999 999999999876 889999999986 4568999999965
No 375
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.92 E-value=3.6e-25 Score=260.03 Aligned_cols=184 Identities=22% Similarity=0.342 Sum_probs=153.1
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCc---ccccceeEEEccCCCCCCCCCHHHHHHHHHHccCCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLES---KLLKIISAYVMQDDLLFPMLTVEETLMFAAEFRLPRS 77 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~---~~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~~~~ 77 (592)
+||+|+.|||||||.++|-++..+ .+|+|.|||.++.+ .+.|++++.+||||.+|.. |||+||.=. ..
T Consensus 1169 VGIVGRTGaGKSSL~~aLFRl~e~--~~G~I~IDgvdI~~igL~dLRsrlsIIPQdPvLFsG-TvR~NLDPf------~e 1239 (1381)
T KOG0054|consen 1169 VGIVGRTGAGKSSLILALFRLVEP--AEGEILIDGVDISKIGLHDLRSRLSIIPQDPVLFSG-TVRFNLDPF------DE 1239 (1381)
T ss_pred EEEeCCCCCCHHHHHHHHHHhcCc--cCCeEEEcCeecccccHHHHHhcCeeeCCCCceecC-ccccccCcc------cc
Confidence 589999999999999999999875 46999999999876 4678889999999999998 999998511 12
Q ss_pred CCHHHHHHHHHHHHHHcCC-------cccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHH
Q 048028 78 VTKTKKQERVEALINQLGL-------RSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMV 150 (592)
Q Consensus 78 ~~~~~~~~~v~~~l~~lgL-------~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i 150 (592)
.++++ +-+.|+..+| ....|+.|. +.+..+|-||||.+++||||+++++||+|||.|+++|+.+-..|
T Consensus 1240 ~sD~~----IW~ALe~~~Lk~~v~~~p~~Ld~~v~-egG~N~SvGQRQLlCLARALLr~skILvLDEATAsVD~~TD~lI 1314 (1381)
T KOG0054|consen 1240 YSDDE----IWEALERCQLKDVVSSLPGGLDSEVS-EGGENFSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALI 1314 (1381)
T ss_pred cCHHH----HHHHHHHhChHHHHhhCCcCCCceec-CCCccCChHHHHHHHHHHHHhccCCEEEEecccccCChHHHHHH
Confidence 33333 3344444333 334566664 46678999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCEEEEEecCChhHHHhhhceEEEecCCeEeeecChhhHHH
Q 048028 151 VNVLQRIAKSGSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNETPSNLAQ 201 (592)
Q Consensus 151 ~~~l~~la~~g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~~~~~~ 201 (592)
.+.||+-= +++|||.+.|..+. +. -+|||++|++|+++++|+|.++.+
T Consensus 1315 Q~tIR~~F-~dcTVltIAHRl~T-Vm-d~DrVlVld~G~v~EfdsP~~Ll~ 1362 (1381)
T KOG0054|consen 1315 QKTIREEF-KDCTVLTIAHRLNT-VM-DSDRVLVLDAGRVVEFDSPAELLS 1362 (1381)
T ss_pred HHHHHHHh-cCCeEEEEeeccch-hh-hcCeEEEeeCCeEeecCChHHHHh
Confidence 99999853 47999999999984 54 489999999999999999998853
No 376
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.92 E-value=3e-25 Score=202.79 Aligned_cols=177 Identities=26% Similarity=0.390 Sum_probs=142.4
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEEC--CEecC--cc-------cccceeEEEccCCCCCCCCCHHHHHHHH
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLN--GEVLE--SK-------LLKIISAYVMQDDLLFPMLTVEETLMFA 69 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~--g~~~~--~~-------~~~~~~~yv~Q~~~l~~~lTV~E~l~f~ 69 (592)
+++-||||+|||||||+|-|.+.++ +|+|.+. |.-++ .. -.++.+|||.|.-...|..+..|.++-.
T Consensus 40 vvL~G~SG~GKStllr~LYaNY~~d--~G~I~v~H~g~~vdl~~a~pr~vl~vRr~TiGyVSQFLRviPRV~aLdVvaeP 117 (235)
T COG4778 40 VVLHGPSGSGKSTLLRSLYANYLPD--EGQILVRHEGEWVDLVTAEPREVLEVRRTTIGYVSQFLRVIPRVSALDVVAEP 117 (235)
T ss_pred EEeeCCCCCcHHHHHHHHHhccCCC--CceEEEEeCcchhhhhccChHHHHHHHHhhhHHHHHHHHhccCcchHHHHHhH
Confidence 3678999999999999999998754 5999884 33222 11 1234579999998888887766665544
Q ss_pred HHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHH
Q 048028 70 AEFRLPRSVTKTKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFM 149 (592)
Q Consensus 70 ~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~ 149 (592)
+.- ...+.+..++++..++.+|++.+..=. -.+...||||+|||.|||.++.|-+||+|||||+.||..++.-
T Consensus 118 ll~---~gv~~~~a~~~a~~Ll~rLnlperLW~----LaPaTFSGGEqQRVNIaRgfivd~pILLLDEPTasLDa~Nr~v 190 (235)
T COG4778 118 LLA---RGVPREVARAKAADLLTRLNLPERLWS----LAPATFSGGEQQRVNIARGFIVDYPILLLDEPTASLDATNRAV 190 (235)
T ss_pred HHH---cCCCHHHHHHHHHHHHHHcCCCHHHhc----CCCcccCCchheehhhhhhhhccCceEEecCCcccccccchHH
Confidence 322 356777788899999999999765432 2356799999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCEEEEEecCChhHHHhhhceEEEecC
Q 048028 150 VVNVLQRIAKSGSIVIMSIHQPSYRILSLLDRLIILSH 187 (592)
Q Consensus 150 i~~~l~~la~~g~tvi~~~H~~~~~i~~~~D~v~ll~~ 187 (592)
++++|++-..+|..+|=+-||-+ --...+||++-+..
T Consensus 191 Vveli~e~Ka~GaAlvGIFHDee-vre~vadR~~~~~~ 227 (235)
T COG4778 191 VVELIREAKARGAALVGIFHDEE-VREAVADRLLDVSA 227 (235)
T ss_pred HHHHHHHHHhcCceEEEeeccHH-HHHHHhhheeeccc
Confidence 99999998888999999999965 34568999988864
No 377
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.92 E-value=1.1e-26 Score=228.83 Aligned_cols=166 Identities=18% Similarity=0.216 Sum_probs=123.8
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCcccccceeEEEccCCCCCCCCCHHHHHHHHHHccCC-----
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLESKLLKIISAYVMQDDLLFPMLTVEETLMFAAEFRLP----- 75 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~~----- 75 (592)
++|+||||||||||+++|.- ++|.+... ..++.+++++|+..+++.+|++|.+.+.+.....
T Consensus 28 ~~ivGpNGaGKSTll~~i~~------------~~G~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 94 (212)
T cd03274 28 SAIVGPNGSGKSNVIDSMLF------------VFGFRASK-MRQKKLSDLIHNSAGHPNLDSCSVEVHFQEIIDKPLLKS 94 (212)
T ss_pred EEEECCCCCCHHHHHHHHHH------------HhccCHHH-hhhhhHHHHhcCCCCCCCCceEEEEEEEEeCCCHHHHHH
Confidence 48999999999999999972 22332211 1124578999999999999999987665432100
Q ss_pred CCCCHHHHHH--HHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhh----CCcEEEEeCCCCCCCHHHHHH
Q 048028 76 RSVTKTKKQE--RVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIH----DPILLFLDEPTSGLDSTSAFM 149 (592)
Q Consensus 76 ~~~~~~~~~~--~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~----~p~lllLDEPtsgLD~~~~~~ 149 (592)
.....++... ..+++++.++|.+..++.++ .+|+|||||++||++++. +|+++++||||+|||+.+...
T Consensus 95 ~g~~~~~~~~~v~~~~~~~~~~L~~~~~~~~~-----~lS~G~~~r~~la~al~~~~~~~p~ililDEPt~gLD~~~~~~ 169 (212)
T cd03274 95 KGIDLDHNRFLILQGEVEQIAQMPKKSWKNIS-----NLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFRNVSI 169 (212)
T ss_pred CCcCCCCCceEEcCCcEEEeeccccccccchh-----hcCHHHHHHHHHHHHHHhcccCCCCEEEEcCCCcCCCHHHHHH
Confidence 0111111111 12566677888777766554 599999999999999974 579999999999999999999
Q ss_pred HHHHHHHHHHcCCEEEEEecCChhHHHhhhceEEEecC
Q 048028 150 VVNVLQRIAKSGSIVIMSIHQPSYRILSLLDRLIILSH 187 (592)
Q Consensus 150 i~~~l~~la~~g~tvi~~~H~~~~~i~~~~D~v~ll~~ 187 (592)
+.+.++++++ +.++|+++|++ ++.+.|||+++|..
T Consensus 170 l~~~l~~~~~-~~~~iivs~~~--~~~~~~d~v~~~~~ 204 (212)
T cd03274 170 VANYIKERTK-NAQFIVISLRN--NMFELADRLVGIYK 204 (212)
T ss_pred HHHHHHHHcC-CCEEEEEECcH--HHHHhCCEEEEEEe
Confidence 9999999864 67888888996 47899999999975
No 378
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=99.92 E-value=4.5e-25 Score=217.71 Aligned_cols=168 Identities=20% Similarity=0.166 Sum_probs=116.1
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECC--EecCcccccceeEEEccCCCCCCCCCHHHHHHHHHHccCCCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNG--EVLESKLLKIISAYVMQDDLLFPMLTVEETLMFAAEFRLPRSV 78 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g--~~~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~~~~~ 78 (592)
++|+|||||||||||++|++.+.. ...+....+. ..+.....+..+++++|++.... ++.+.. ..
T Consensus 31 ~~i~G~NGsGKSTll~~i~~~l~g-~~~~~~~~~~~~~~~~~~~~~~~v~~~f~~~~~~~--~~~r~~----------gl 97 (213)
T cd03279 31 FLICGPTGAGKSTILDAITYALYG-KTPRYGRQENLRSVFAPGEDTAEVSFTFQLGGKKY--RVERSR----------GL 97 (213)
T ss_pred EEEECCCCCCHHHHHHHheeeEec-CccccccchhHHHHhcCCCccEEEEEEEEECCeEE--EEEEec----------CC
Confidence 479999999999999999965421 1123333221 11122233455788888763211 121111 12
Q ss_pred CHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhh----------CCcEEEEeCCCCCCCHHHHH
Q 048028 79 TKTKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIH----------DPILLFLDEPTSGLDSTSAF 148 (592)
Q Consensus 79 ~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~----------~p~lllLDEPtsgLD~~~~~ 148 (592)
+.++..+.+ .++..++.+..+. .++.||||||||++||++|+. +|++++|||||+|||+.+..
T Consensus 98 ~~~~~~~~~--~l~~g~l~~~l~~-----~~~~lS~G~~~r~~la~al~~~p~~~~~~~~~~~~lllDEp~~~lD~~~~~ 170 (213)
T cd03279 98 DYDQFTRIV--LLPQGEFDRFLAR-----PVSTLSGGETFLASLSLALALSEVLQNRGGARLEALFIDEGFGTLDPEALE 170 (213)
T ss_pred CHHHHHHhh--hhhhcchHHHhcC-----CccccCHHHHHHHHHHHHHHhHHHhhhccCCCCCEEEEeCCcccCCHHHHH
Confidence 222221111 2333334444443 345699999999999999985 67899999999999999999
Q ss_pred HHHHHHHHHHHcCCEEEEEecCChhHHHhhhceEEEecCCe
Q 048028 149 MVVNVLQRIAKSGSIVIMSIHQPSYRILSLLDRLIILSHGQ 189 (592)
Q Consensus 149 ~i~~~l~~la~~g~tvi~~~H~~~~~i~~~~D~v~ll~~G~ 189 (592)
.+.+.|+++++++.|+|+++|+++ .+...+|+++++++|.
T Consensus 171 ~~~~~l~~~~~~~~tii~itH~~~-~~~~~~~~i~~~~~~~ 210 (213)
T cd03279 171 AVATALELIRTENRMVGVISHVEE-LKERIPQRLEVIKTPG 210 (213)
T ss_pred HHHHHHHHHHhCCCEEEEEECchH-HHHhhCcEEEEEecCC
Confidence 999999999877999999999997 5788899999999874
No 379
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.91 E-value=6e-24 Score=233.14 Aligned_cols=172 Identities=27% Similarity=0.399 Sum_probs=138.4
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCcccccceeEEEccCC-CCCCCCCHHHHHHHHHHccCCCCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLESKLLKIISAYVMQDD-LLFPMLTVEETLMFAAEFRLPRSVT 79 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~~~~~~~~~yv~Q~~-~l~~~lTV~E~l~f~~~l~~~~~~~ 79 (592)
+||+||||+|||||||+|+|...+. +|+|.+.-. -.+||..|+. .+.++.|+.|++.-.. |
T Consensus 351 iaiiG~NG~GKSTLlk~l~g~~~~~--~G~v~~g~~--------v~igyf~Q~~~~l~~~~t~~d~l~~~~----~---- 412 (530)
T COG0488 351 IAIVGPNGAGKSTLLKLLAGELGPL--SGTVKVGET--------VKIGYFDQHRDELDPDKTVLEELSEGF----P---- 412 (530)
T ss_pred EEEECCCCCCHHHHHHHHhhhcccC--CceEEeCCc--------eEEEEEEehhhhcCccCcHHHHHHhhC----c----
Confidence 5899999999999999999987754 699987421 2379999986 5558889999886421 1
Q ss_pred HHHHHHHHHHHHHHcCCcc-cccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 048028 80 KTKKQERVEALINQLGLRS-AAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVNVLQRIA 158 (592)
Q Consensus 80 ~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~la 158 (592)
...+..+...|..+++.. ...++| +.||||||.||.+|+.++.+|.+|+|||||+.||..+...+.+.|++.
T Consensus 413 -~~~e~~~r~~L~~f~F~~~~~~~~v-----~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f- 485 (530)
T COG0488 413 -DGDEQEVRAYLGRFGFTGEDQEKPV-----GVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDF- 485 (530)
T ss_pred -cccHHHHHHHHHHcCCChHHHhCch-----hhcCHhHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhC-
Confidence 111567889999999964 334444 469999999999999999999999999999999999999999998876
Q ss_pred HcCCEEEEEecCChhHHHhhhceEEEecCCeE-eeecChhhHHH
Q 048028 159 KSGSIVIMSIHQPSYRILSLLDRLIILSHGQS-VYNETPSNLAQ 201 (592)
Q Consensus 159 ~~g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~-v~~g~~~~~~~ 201 (592)
..|||+++||.. -+-..+++++.+.+ ++ .+.|..++..+
T Consensus 486 --~Gtvl~VSHDr~-Fl~~va~~i~~~~~-~~~~~~g~y~~y~~ 525 (530)
T COG0488 486 --EGTVLLVSHDRY-FLDRVATRIWLVED-KVEEFEGGYEDYLE 525 (530)
T ss_pred --CCeEEEEeCCHH-HHHhhcceEEEEcC-ceeEcCCCHHHHHH
Confidence 459999999987 58899999999998 44 34476655443
No 380
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.89 E-value=1.3e-22 Score=244.55 Aligned_cols=137 Identities=23% Similarity=0.356 Sum_probs=112.9
Q ss_pred CCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCccc-ccccccCCCCCCCCHHHHHHHHHHHHHh---hCCc
Q 048028 56 LFPMLTVEETLMFAAEFRLPRSVTKTKKQERVEALINQLGLRSA-AKTFIGDERHRGVSGGERRRVSIGIHII---HDPI 131 (592)
Q Consensus 56 l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~~~vg~~~~~~LSgGerqRv~ia~~L~---~~p~ 131 (592)
.+...||.|+|.++..-........++..+++ ++++.+||.+. .+..+ ..||||||||+.||++|+ .+|+
T Consensus 759 ~~~~~tI~evL~mtv~ea~~~f~~~~~i~~~l-~~L~~vGL~~l~l~q~~-----~tLSGGE~QRV~LAraL~~~~~~P~ 832 (1809)
T PRK00635 759 RYKGKNIADILEMTAYEAEKFFLDEPSIHEKI-HALCSLGLDYLPLGRPL-----SSLSGGEIQRLKLAYELLAPSKKPT 832 (1809)
T ss_pred ccCCCCHHHHHHcCHHHHHHcccChHHHHHHH-HHHHHcCCcchhhcCcc-----ccCCHHHHHHHHHHHHHhhcCCCCC
Confidence 56678999999887542111112234455566 58899999875 55544 569999999999999998 6999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCChhHHHhhhceEEEec------CCeEeeecChhhHH
Q 048028 132 LLFLDEPTSGLDSTSAFMVVNVLQRIAKSGSIVIMSIHQPSYRILSLLDRLIILS------HGQSVYNETPSNLA 200 (592)
Q Consensus 132 lllLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~H~~~~~i~~~~D~v~ll~------~G~~v~~g~~~~~~ 200 (592)
+++|||||+|||+.+...+++.|++++++|.|||+++|++. .+ +.+|++++|. +|+++..|+++++.
T Consensus 833 LLILDEPTsGLD~~~~~~Ll~lL~~L~~~G~TVIiIsHdl~-~i-~~aDrVi~L~p~gg~~~G~iv~~Gtpeel~ 905 (1809)
T PRK00635 833 LYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVIIEHNMH-VV-KVADYVLELGPEGGNLGGYLLASCSPEELI 905 (1809)
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HH-HhCCEEEEEccCCCCCCCEEEEeCCHHHHH
Confidence 99999999999999999999999999988999999999997 45 8999999996 78999999998874
No 381
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.89 E-value=2.3e-23 Score=210.17 Aligned_cols=177 Identities=18% Similarity=0.249 Sum_probs=117.0
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEe--cCc--------ccccceeEEEccCCCC-CCCCCHHHHHHHH
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEV--LES--------KLLKIISAYVMQDDLL-FPMLTVEETLMFA 69 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~--~~~--------~~~~~~~~yv~Q~~~l-~~~lTV~E~l~f~ 69 (592)
++|+|||||||||||++|++...+. .|++..++.. +.. ....-.+.|..|++.. .-..++++..
T Consensus 25 ~~i~G~NGsGKStll~ai~~~l~~~--~~~~r~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~~~~~~~~~~~~~~~~--- 99 (247)
T cd03275 25 TCIIGPNGSGKSNLMDAISFVLGEK--SSHLRSKNLKDLIYRARVGKPDSNSAYVTAVYEDDDGEEKTFRRIITGGS--- 99 (247)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCC--cccccccchhhhcccCccccCCCceEEEEEEEEcCCCcEEEEEEEEECCc---
Confidence 4799999999999999999887532 2555443211 000 0111123444443221 0011111110
Q ss_pred HHccCCCCCCHHHHHHHHHHHHHHcCCccccccc---------ccC--------CCCCCCCHHHHHHHHHHHHHhhC---
Q 048028 70 AEFRLPRSVTKTKKQERVEALINQLGLRSAAKTF---------IGD--------ERHRGVSGGERRRVSIGIHIIHD--- 129 (592)
Q Consensus 70 ~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~---------vg~--------~~~~~LSgGerqRv~ia~~L~~~--- 129 (592)
..++... +...++.++++++.+|+....... +.+ ..+..||||||||++||++++.+
T Consensus 100 ~~~~ing---k~~s~~~~~~~l~~~gi~~~~~~~~i~Qg~v~~i~~~~p~~~~~~~~~~LS~G~k~rl~la~al~~~~~~ 176 (247)
T cd03275 100 SSYRING---KVVSLKEYNEELEKINILVKARNFLVFQGDVESIASKNPPGKRFRDMDNLSGGEKTMAALALLFAIHSYQ 176 (247)
T ss_pred eEEEECC---EEecHHHHHHHHHHhCCCCCCCeEEEECCchhhhhhccCcchhhhhHHHcCHHHHHHHHHHHHHHHhccC
Confidence 0011111 112234567899999986432111 111 12377999999999999999875
Q ss_pred -CcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCChhHHHhhhceEEEecC
Q 048028 130 -PILLFLDEPTSGLDSTSAFMVVNVLQRIAKSGSIVIMSIHQPSYRILSLLDRLIILSH 187 (592)
Q Consensus 130 -p~lllLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~H~~~~~i~~~~D~v~ll~~ 187 (592)
|+++++||||+|||+..+..+.+.|++++++|.++|+++|+++ +.+.+|++++|.+
T Consensus 177 ~p~~lllDEPt~~LD~~~~~~l~~~i~~~~~~g~~vi~isH~~~--~~~~~d~i~~~~~ 233 (247)
T cd03275 177 PAPFFVLDEVDAALDNTNVGKVASYIREQAGPNFQFIVISLKEE--FFSKADALVGVYR 233 (247)
T ss_pred CCCEEEEecccccCCHHHHHHHHHHHHHhccCCcEEEEEECCHH--HHhhCCeEEEEEe
Confidence 8999999999999999999999999999877999999999964 6789999999975
No 382
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.88 E-value=6.5e-22 Score=229.56 Aligned_cols=125 Identities=31% Similarity=0.424 Sum_probs=107.1
Q ss_pred CCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcc-cccccccCCCCCCCCHHHHHHHHHHHHHhhCC---cEEEE
Q 048028 60 LTVEETLMFAAEFRLPRSVTKTKKQERVEALINQLGLRS-AAKTFIGDERHRGVSGGERRRVSIGIHIIHDP---ILLFL 135 (592)
Q Consensus 60 lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p---~lllL 135 (592)
|||.|++.|...+. ...+..+.++.+||.+ ..+.. +..||||||||+.||++|+.+| ++++|
T Consensus 792 ltv~E~l~~f~~~~---------~i~~~l~~L~~vgL~~l~l~~~-----~~tLSgGEkQRl~LAraL~~~p~~~~llIL 857 (943)
T PRK00349 792 MTVEEALEFFEAIP---------KIARKLQTLVDVGLGYIKLGQP-----ATTLSGGEAQRVKLAKELSKRSTGKTLYIL 857 (943)
T ss_pred CcHHHHHHHHHhch---------hhhHHHHHHHHCCCCcccccCC-----cccCCHHHHHHHHHHHHHhcCCCCCeEEEE
Confidence 78999998875432 1123467899999975 34444 4569999999999999999999 99999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCChhHHHhhhceEEEe------cCCeEeeecChhhHH
Q 048028 136 DEPTSGLDSTSAFMVVNVLQRIAKSGSIVIMSIHQPSYRILSLLDRLIIL------SHGQSVYNETPSNLA 200 (592)
Q Consensus 136 DEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~H~~~~~i~~~~D~v~ll------~~G~~v~~g~~~~~~ 200 (592)
||||+|||+.+...+++.|+++.++|.|||+++|++. .+ +.+|+++.| ++|++++.|+++++.
T Consensus 858 DEPtsGLD~~~~~~L~~~L~~l~~~G~TVIiitH~~~-~i-~~aD~ii~Lgp~~G~~~G~Iv~~Gt~~el~ 926 (943)
T PRK00349 858 DEPTTGLHFEDIRKLLEVLHRLVDKGNTVVVIEHNLD-VI-KTADWIIDLGPEGGDGGGEIVATGTPEEVA 926 (943)
T ss_pred ECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HH-HhCCEEEEecCCcCCCCCEEEEeCCHHHHH
Confidence 9999999999999999999999888999999999996 34 679999999 689999999998874
No 383
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.88 E-value=2.4e-22 Score=195.93 Aligned_cols=155 Identities=19% Similarity=0.264 Sum_probs=110.8
Q ss_pred EEECCCCCcHHHHHHHHhCCCCCCCceeEEEE--CCEec----CcccccceeEEEccCCCCCCCCCHHHHHHHHHHccCC
Q 048028 2 AILGASGAGKTTLMDALAGRIEKESLQGAVTL--NGEVL----ESKLLKIISAYVMQDDLLFPMLTVEETLMFAAEFRLP 75 (592)
Q Consensus 2 aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i--~g~~~----~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~~ 75 (592)
+|+|||||||||||.+|..... |+... .|... ........+..++|+..++++
T Consensus 25 ~i~G~NGsGKStll~ai~~~l~-----~~~~~~~r~~~~~~~i~~~~~~~~i~~~~~~~~~~~~---------------- 83 (198)
T cd03276 25 FIVGNNGSGKSAILTALTIGLG-----GKASDTNRGSSLKDLIKDGESSAKITVTLKNQGLDAN---------------- 83 (198)
T ss_pred EEECCCCCcHHHHHHHHHHHhc-----CCcccccccccHHHHhhCCCCeEEEEEEEEcCCccCC----------------
Confidence 7999999999999999974322 11111 12211 111113346777777665541
Q ss_pred CCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHH----hhCCcEEEEeCCCCCCCHHHHHHHH
Q 048028 76 RSVTKTKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHI----IHDPILLFLDEPTSGLDSTSAFMVV 151 (592)
Q Consensus 76 ~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L----~~~p~lllLDEPtsgLD~~~~~~i~ 151 (592)
.. ....+++++++++. .+..++. ++.||+|||||++||+++ +.+|++++|||||+|||..++..+.
T Consensus 84 -~~-~~~~~~~~~~~l~~---~~~~~~~-----~~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP~~glD~~~~~~~~ 153 (198)
T cd03276 84 -PL-CVLSQDMARSFLTS---NKAAVRD-----VKTLSGGERSFSTVCLLLSLWEVMESPFRCLDEFDVFMDMVNRKIST 153 (198)
T ss_pred -cC-CHHHHHHHHHHhcc---ccccCCc-----ccccChhHHHHHHHHHHHHHhcccCCCEEEecCcccccCHHHHHHHH
Confidence 01 11224567777776 4445444 456999999999999999 5899999999999999999999999
Q ss_pred HHHHHHHHc--C-CEEEEEecCChhHHHhhhceEEEecCCe
Q 048028 152 NVLQRIAKS--G-SIVIMSIHQPSYRILSLLDRLIILSHGQ 189 (592)
Q Consensus 152 ~~l~~la~~--g-~tvi~~~H~~~~~i~~~~D~v~ll~~G~ 189 (592)
+.|++++++ + .+|++++|+++ ++.+ +|+|.+|..++
T Consensus 154 ~~l~~~~~~~~~~~~iii~th~~~-~i~~-~d~v~~~~~~~ 192 (198)
T cd03276 154 DLLVKEAKKQPGRQFIFITPQDIS-GLAS-SDDVKVFRMKD 192 (198)
T ss_pred HHHHHHHhcCCCcEEEEEECCccc-cccc-ccceeEEEecC
Confidence 999998654 3 58999999997 4655 49999998754
No 384
>PF01061 ABC2_membrane: ABC-2 type transporter; InterPro: IPR013525 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). A number of bacterial transport systems have been found to contain integral membrane components that have similar sequences []: these systems fit the characteristics of ATP-binding cassette transporters []. The proteins form homo- or hetero-oligomeric channels, allowing ATP-mediated transport. Hydropathy analysis of the proteins has revealed the presence of 6 possible transmembrane regions. These proteins belong to family 2 of ABC transporters.; GO: 0016020 membrane
Probab=99.88 E-value=4.2e-24 Score=208.08 Aligned_cols=208 Identities=20% Similarity=0.309 Sum_probs=187.5
Q ss_pred HHHHHHHHHHHHHhhcChHHH-HHHHHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhh
Q 048028 286 IETIVISKRLLTNSRRMPELF-GIRFGSVLVTGFILATLFWKLQDSPKGALKRLGFFAFAMTTIFYI-CAREIPALLQER 363 (592)
Q Consensus 286 ~q~~~l~~R~~~~~~Rd~~~~-~~r~~~~i~~~l~~G~~f~~~~~~~~~~~~~~g~~f~~~~~~~~~-~~~~i~~~~~er 363 (592)
+|++.+++|+++..+|||... ..+++..+++++++|.+|.++++++++. ++.|++++.+...++. ..+.......||
T Consensus 1 ~q~~~l~~r~~~~~~r~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (210)
T PF01061_consen 1 RQIWALLRREFKRFWRNPFLGLIWSLIFPLLLLLIFGFIFGKLGNSQDGF-NRPGLIFGSIIFSFFSSISGSSISFERER 79 (210)
T ss_pred CHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHHHHHHHHhccccccccc-ccceeeehhhHHhhhhhcccchhhhhhhc
Confidence 599999999999999999888 8999999999999999999998555555 7778777766666543 334447788999
Q ss_pred hHHHHHhcCCCCCchhHHHHHHHHHHhHHHHHHHHHHhhhhhccCCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhCc
Q 048028 364 DIFIRETSYNTYRHSSYVFAHSLVSMPPITTLSITFAVTTFWAVGLSGGFSGFLFFFITIFASFWAGSSFMAFIAGLVSH 443 (592)
Q Consensus 364 ~v~~rE~~~~~Y~~~~y~la~~l~~lP~~~~~~~~f~~i~Y~~~gl~~~~~~f~~f~l~~~l~~~~~~~~~~~i~~~~~~ 443 (592)
..+.||+.++.|++.+|.+|+.+.+++..++.++++.++.|++.|++.+ +++.+++.+++..+++.++|.+++.++++
T Consensus 80 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~g~~~~~~~~~ 157 (210)
T PF01061_consen 80 GTLERERASPLYSPFAYLLAKVLSAFLISLIISLIVLIIAYLLFGLDFE--SFFLFLLILLLSILCSSGLGLLLAALFPS 157 (210)
T ss_pred cccccccccccccchhhheeeccccccccccccchhhhhhhhhhccccc--cchheecccccccccccccccccccchhh
Confidence 9999999999999999999999999999999999999999999999877 67777778888888889999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhccccCCCCCCcchhhhhccCcchHHHHHHHHHHh
Q 048028 444 IIIGFTIVVAILGYFLLFCGFYIPRDEIPPYWIWFHYVSLVKYPFQGVLQNEF 496 (592)
Q Consensus 444 ~~~a~~~~~~~~~~~~lf~Gf~i~~~~ip~~~~W~~yiSp~~y~~~~l~~nef 496 (592)
...+..+.+.+..+++++||.++|.+++|+|++|+.|+||++|++|++..++|
T Consensus 158 ~~~~~~~~~~~~~~~~~~sg~~~p~~~lP~~~~~i~~~~P~~~~~~~~r~~~f 210 (210)
T PF01061_consen 158 FRDASAISSLILLLLFFLSGVFFPLSSLPSWLRWISYLNPLTYAVEALRAALF 210 (210)
T ss_pred hhhhhhhhhhcccccccceeeecchHHChHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 99999999999999999999999999999999999999999999999998876
No 385
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.86 E-value=2.7e-21 Score=203.73 Aligned_cols=191 Identities=25% Similarity=0.410 Sum_probs=161.6
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEec-Cc---c-cccceeEEEccCC---CCCCCCCHHHHHHHHHHc
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVL-ES---K-LLKIISAYVMQDD---LLFPMLTVEETLMFAAEF 72 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~-~~---~-~~~~~~~yv~Q~~---~l~~~lTV~E~l~f~~~l 72 (592)
++|.|-.|-|-+.|+.+|+|+.++.+ |+|.++|+++ .. . ..+..++|||+|. .+.+.+|+.||+.+...-
T Consensus 287 vGIAGV~GNGQ~eL~eaisGlr~~~~--G~I~l~G~~v~~~~~~~~~r~~G~~~VPedR~~~Glv~~~sl~eN~vL~~~~ 364 (501)
T COG3845 287 VGIAGVAGNGQSELVEAISGLRKPAS--GRILLNGKDVLGRLSPRERRRLGLAYVPEDRHGHGLVLDLSLAENLVLGRHD 364 (501)
T ss_pred EEEEecCCCCHHHHHHHHhCCCccCC--ceEEECCEeccccCCHHHHHhcCCccCChhhccCccccCccHHHHhhhhhcc
Confidence 58999999999999999999986543 9999999996 22 2 2334579999986 578999999999876543
Q ss_pred cC----CCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHH
Q 048028 73 RL----PRSVTKTKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAF 148 (592)
Q Consensus 73 ~~----~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~ 148 (592)
+. ..-....+.++...++++++++....- ..+.+.||||++||+-+||+|..+|++|++.+||.|||..+.+
T Consensus 365 ~~~~~~~g~l~~~~i~~~a~~li~~fdVr~~~~----~~~a~~LSGGNqQK~IlaREl~~~p~lLI~~qPTrGLDvgA~~ 440 (501)
T COG3845 365 KKPFSRGGFLDRRAIRKFARELIEEFDVRAPSP----DAPARSLSGGNQQKLILARELARRPDLLIAAQPTRGLDVGAIE 440 (501)
T ss_pred ccccccccccCHHHHHHHHHHHHHHcCccCCCC----CcchhhcCCcceehhhhhhhhccCCCEEEEcCCCccccHHHHH
Confidence 21 112456677888999999999873321 2345679999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCEEEEEecCChhHHHhhhceEEEecCCeEeeecChhh
Q 048028 149 MVVNVLQRIAKSGSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNETPSN 198 (592)
Q Consensus 149 ~i~~~l~~la~~g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~~~ 198 (592)
.+.+.|.+.+++|+.|++++.+.+ |+++++|||.+|++|+++...++++
T Consensus 441 ~I~~~l~e~r~~G~AVLLiS~dLD-Eil~lsDrIaVi~~Gri~~~~~~~~ 489 (501)
T COG3845 441 FIHERLLELRDAGKAVLLISEDLD-EILELSDRIAVIYEGRIVGIVPPEE 489 (501)
T ss_pred HHHHHHHHHHhcCCEEEEEehhHH-HHHHhhheeeeeeCCceeccccccc
Confidence 999999999999999999999997 8999999999999999998877765
No 386
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=99.86 E-value=2.2e-21 Score=212.00 Aligned_cols=166 Identities=28% Similarity=0.422 Sum_probs=131.6
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCcccccceeEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCH
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLESKLLKIISAYVMQDDLLFPMLTVEETLMFAAEFRLPRSVTK 80 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~ 80 (592)
+.|.||||||||||+|+|+|+-+-+. |+|.+- ....+-|+||.+.+... |.||.|.+.. ..++
T Consensus 422 llI~G~SG~GKTsLlRaiaGLWP~g~--G~I~~P--------~~~~~lflpQ~PY~p~G-tLre~l~YP~------~~~~ 484 (604)
T COG4178 422 LLITGESGAGKTSLLRALAGLWPWGS--GRISMP--------ADSALLFLPQRPYLPQG-TLREALCYPN------AAPD 484 (604)
T ss_pred EEEECCCCCCHHHHHHHHhccCccCC--CceecC--------CCCceEEecCCCCCCCc-cHHHHHhCCC------CCCC
Confidence 36899999999999999999987544 777542 12236899999998887 9999987642 1111
Q ss_pred HHHHHHHHHHHHHcCCcccccccccC-CCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Q 048028 81 TKKQERVEALINQLGLRSAAKTFIGD-ERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVNVLQRIAK 159 (592)
Q Consensus 81 ~~~~~~v~~~l~~lgL~~~~~~~vg~-~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~la~ 159 (592)
-..+.+.++|.+.||.+..+..=+. +--+.||+||||||++||.|+++|++++|||-|++||+.+...+.+.+++--
T Consensus 485 -~~d~~l~~vL~~vgL~~L~~rl~~~~~W~~vLS~GEqQRlafARilL~kP~~v~LDEATsALDe~~e~~l~q~l~~~l- 562 (604)
T COG4178 485 -FSDAELVAVLHKVGLGDLAERLDEEDRWDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQLLKEEL- 562 (604)
T ss_pred -CChHHHHHHHHHcCcHHHHHHHhccCcHhhhcChhHHHHHHHHHHHHcCCCEEEEecchhccChHHHHHHHHHHHhhC-
Confidence 2345688899999998877654221 2356799999999999999999999999999999999999999999998733
Q ss_pred cCCEEEEEecCChhHHHhhhceEEEecC
Q 048028 160 SGSIVIMSIHQPSYRILSLLDRLIILSH 187 (592)
Q Consensus 160 ~g~tvi~~~H~~~~~i~~~~D~v~ll~~ 187 (592)
.+.|||.+.|.+. +..+.++.+-+.+
T Consensus 563 p~~tvISV~Hr~t--l~~~h~~~l~l~~ 588 (604)
T COG4178 563 PDATVISVGHRPT--LWNFHSRQLELLD 588 (604)
T ss_pred CCCEEEEeccchh--hHHHHhhheeecc
Confidence 3789999999986 5677777666643
No 387
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.85 E-value=6e-21 Score=198.02 Aligned_cols=160 Identities=29% Similarity=0.365 Sum_probs=128.3
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCcccccceeEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCH
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLESKLLKIISAYVMQDDLLFPMLTVEETLMFAAEFRLPRSVTK 80 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~ 80 (592)
++++||||-||||+.++|||.++|+. |+ .. .-.++|=||--.--...||++.|.-...-+..
T Consensus 370 igilGpNgiGKTTFvk~LAG~ikPde--g~----~~-------~~~vSyKPQyI~~~~~gtV~~~l~~~~~~~~~----- 431 (591)
T COG1245 370 IGILGPNGIGKTTFVKLLAGVIKPDE--GS----EE-------DLKVSYKPQYISPDYDGTVEDLLRSAIRSAFG----- 431 (591)
T ss_pred EEEECCCCcchHHHHHHHhccccCCC--CC----Cc-------cceEeecceeecCCCCCcHHHHHHHhhhhhcc-----
Confidence 47999999999999999999998653 65 11 12367778865444567999988654332111
Q ss_pred HHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH-
Q 048028 81 TKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVNVLQRIAK- 159 (592)
Q Consensus 81 ~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~la~- 159 (592)
....-.++++-|+|++..+..+. +|||||.|||+||.+|..++++.+||||++-||++.+..+.+.||+.+.
T Consensus 432 --~s~~~~ei~~pl~l~~i~e~~v~-----~LSGGELQRvaIaa~L~reADlYllDEPSA~LDvEqR~~vakvIRR~~e~ 504 (591)
T COG1245 432 --SSYFKTEIVKPLNLEDLLERPVD-----ELSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQRIIVAKVIRRFIEN 504 (591)
T ss_pred --cchhHHhhcCccchHHHHhcccc-----cCCchhHHHHHHHHHhccccCEEEecCchhhccHHHHHHHHHHHHHHHhh
Confidence 11234578888999988877665 5999999999999999999999999999999999999999999999987
Q ss_pred cCCEEEEEecCChhHHHhhhceEEEec
Q 048028 160 SGSIVIMSIHQPSYRILSLLDRLIILS 186 (592)
Q Consensus 160 ~g~tvi~~~H~~~~~i~~~~D~v~ll~ 186 (592)
.++|.+++-||.. -+--+.||+++..
T Consensus 505 ~~kta~vVdHDi~-~~dyvsDr~ivF~ 530 (591)
T COG1245 505 NEKTALVVDHDIY-MIDYVSDRLIVFE 530 (591)
T ss_pred cCceEEEEeccee-hhhhhhceEEEEe
Confidence 4789999999986 3666789999885
No 388
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=99.85 E-value=6.1e-22 Score=202.06 Aligned_cols=174 Identities=22% Similarity=0.312 Sum_probs=138.6
Q ss_pred EEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCcc---cccceeEEEccCCCCCCCCCHHHHHHHHHHccCCCCC
Q 048028 2 AILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLESK---LLKIISAYVMQDDLLFPMLTVEETLMFAAEFRLPRSV 78 (592)
Q Consensus 2 aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~~---~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~~~~~ 78 (592)
-|+|.||||||||++.|.|+.+|+ +|+|.+||++++.+ ++|+..+-|+-|-.+|+.+--.| ..
T Consensus 353 FliG~NGsGKST~~~LLtGL~~Pq--sG~I~ldg~pV~~e~ledYR~LfSavFsDyhLF~~ll~~e------------~~ 418 (546)
T COG4615 353 FLIGGNGSGKSTLAMLLTGLYQPQ--SGEILLDGKPVSAEQLEDYRKLFSAVFSDYHLFDQLLGPE------------GK 418 (546)
T ss_pred EEECCCCCcHHHHHHHHhcccCCC--CCceeECCccCCCCCHHHHHHHHHHHhhhHhhhHhhhCCc------------cC
Confidence 589999999999999999999865 49999999999764 46666666777777776531111 11
Q ss_pred CHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHH-H
Q 048028 79 TKTKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVNVLQR-I 157 (592)
Q Consensus 79 ~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~-l 157 (592)
...+.++..++++.|.+...-.=|+-..-.||.|||||+++-.||+-+.+|+++||=-+.-||.-++.+.+.+-- +
T Consensus 419 ---as~q~i~~~LqrLel~~ktsl~d~~fs~~kLStGQkKRlAll~AllEeR~Ilv~DEWAADQDPaFRR~FY~~lLp~L 495 (546)
T COG4615 419 ---ASPQLIEKWLQRLELAHKTSLNDGRFSNLKLSTGQKKRLALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLL 495 (546)
T ss_pred ---CChHHHHHHHHHHHHhhhhcccCCcccccccccchHHHHHHHHHHHhhCCeEEeehhhccCChHHHHHHHHHHhHHH
Confidence 123568889999988765432222223456999999999999999999999999999999999999999876555 5
Q ss_pred HHcCCEEEEEecCChhHHHhhhceEEEecCCeEeeec
Q 048028 158 AKSGSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNE 194 (592)
Q Consensus 158 a~~g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g 194 (592)
.++|+||+.++||-. -|..+||++.+++|+++...
T Consensus 496 K~qGKTI~aIsHDd~--YF~~ADrll~~~~G~~~e~t 530 (546)
T COG4615 496 KEQGKTIFAISHDDH--YFIHADRLLEMRNGQLSELT 530 (546)
T ss_pred HHhCCeEEEEecCch--hhhhHHHHHHHhcCceeecc
Confidence 567999999999964 68999999999999998754
No 389
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.85 E-value=2.9e-21 Score=204.34 Aligned_cols=172 Identities=23% Similarity=0.340 Sum_probs=131.0
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCcccccceeEEEccC--CCCCCCCCHHHHHHHHHHccCCCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLESKLLKIISAYVMQD--DLLFPMLTVEETLMFAAEFRLPRSV 78 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~~~~~~~~~yv~Q~--~~l~~~lTV~E~l~f~~~l~~~~~~ 78 (592)
+|++||||+|||||||++.|.+.|. .|.|.-.-+ ..+++-.|. +.+--+.++-|++.=. .
T Consensus 419 vAlVGPNG~GKsTLlKl~~gdl~p~--~G~vs~~~H--------~~~~~y~Qh~~e~ldl~~s~le~~~~~--------~ 480 (614)
T KOG0927|consen 419 VALVGPNGAGKSTLLKLITGDLQPT--IGMVSRHSH--------NKLPRYNQHLAEQLDLDKSSLEFMMPK--------F 480 (614)
T ss_pred eeEecCCCCchhhhHHHHhhccccc--ccccccccc--------ccchhhhhhhHhhcCcchhHHHHHHHh--------c
Confidence 5899999999999999999999864 487754322 122333443 3344455676765421 1
Q ss_pred CHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 048028 79 TKTKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVNVLQRIA 158 (592)
Q Consensus 79 ~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~la 158 (592)
++....+.+..++.++||....++ .+.++||+|||+||..|+.++..|.+|+|||||+|||..+...+.+.|.+.
T Consensus 481 ~~~~~~e~~r~ilgrfgLtgd~q~----~p~~~LS~Gqr~rVlFa~l~~kqP~lLlLDEPtnhLDi~tid~laeaiNe~- 555 (614)
T KOG0927|consen 481 PDEKELEEMRSILGRFGLTGDAQV----VPMSQLSDGQRRRVLFARLAVKQPHLLLLDEPTNHLDIETIDALAEAINEF- 555 (614)
T ss_pred cccchHHHHHHHHHHhCCCccccc----cchhhcccccchhHHHHHHHhcCCcEEEecCCCcCCCchhHHHHHHHHhcc-
Confidence 223445778999999999844432 335679999999999999999999999999999999999999999988875
Q ss_pred HcCCEEEEEecCChhHHHhhhceEEEecCCeE-eeecChhh
Q 048028 159 KSGSIVIMSIHQPSYRILSLLDRLIILSHGQS-VYNETPSN 198 (592)
Q Consensus 159 ~~g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~-v~~g~~~~ 198 (592)
..+||.++||-. -|-+.++++.+..+|.+ .+.|+...
T Consensus 556 --~Ggvv~vSHDfr-lI~qVaeEi~~c~~~~~~~~~G~i~~ 593 (614)
T KOG0927|consen 556 --PGGVVLVSHDFR-LISQVAEEIWVCENGTVTKWDGDIEI 593 (614)
T ss_pred --CCceeeeechhh-HHHHHHHHhHhhccCceeecCccHHH
Confidence 347999999987 58889999999988754 56666543
No 390
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.85 E-value=2.8e-20 Score=215.66 Aligned_cols=125 Identities=29% Similarity=0.394 Sum_probs=104.4
Q ss_pred CCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCccc-ccccccCCCCCCCCHHHHHHHHHHHHHhh---CCcEEE
Q 048028 59 MLTVEETLMFAAEFRLPRSVTKTKKQERVEALINQLGLRSA-AKTFIGDERHRGVSGGERRRVSIGIHIIH---DPILLF 134 (592)
Q Consensus 59 ~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~~~vg~~~~~~LSgGerqRv~ia~~L~~---~p~lll 134 (592)
.|||.|.+.|...+. ...+..++++.+||... .++ ..+.||||||||+.||++|+. +|++++
T Consensus 789 ~~tv~e~~~f~~~~~---------~i~~~l~~L~~~gL~~l~l~~-----~~~tLSgGe~QRl~LA~aL~~~~~~p~llI 854 (924)
T TIGR00630 789 DMTVEEAYEFFEAVP---------SISRKLQTLCDVGLGYIKLGQ-----PATTLSGGEAQRIKLAKELSKRSTGRTLYI 854 (924)
T ss_pred CCcHHHHHHHHHhcc---------chhHHHHHHHHcCCCchhhcC-----ccccCCHHHHHHHHHHHHHhhcCCCCCEEE
Confidence 467888887765432 11235678899999752 443 345699999999999999997 599999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCChhHHHhhhceEEEe------cCCeEeeecChhhH
Q 048028 135 LDEPTSGLDSTSAFMVVNVLQRIAKSGSIVIMSIHQPSYRILSLLDRLIIL------SHGQSVYNETPSNL 199 (592)
Q Consensus 135 LDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~H~~~~~i~~~~D~v~ll------~~G~~v~~g~~~~~ 199 (592)
|||||+|||+.....+.+.|+++.++|.|||+++|++. .+ +.+|+++.| ++|++++.|+++++
T Consensus 855 LDEPtsgLD~~~~~~L~~~L~~l~~~G~TVIvi~H~~~-~i-~~aD~ii~Lgp~~G~~gG~iv~~G~~~~l 923 (924)
T TIGR00630 855 LDEPTTGLHFDDIKKLLEVLQRLVDQGNTVVVIEHNLD-VI-KTADYIIDLGPEGGDGGGTIVASGTPEEV 923 (924)
T ss_pred EECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HH-HhCCEEEEecCCccCCCCEEEEeCCHHHh
Confidence 99999999999999999999999888999999999997 34 679999999 78999999998764
No 391
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.82 E-value=6e-20 Score=181.00 Aligned_cols=81 Identities=21% Similarity=0.241 Sum_probs=69.0
Q ss_pred CCCCCCHHHHHHHHHHHHH----hhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-C-CEEEEEecCChhHHHhhhc-
Q 048028 108 RHRGVSGGERRRVSIGIHI----IHDPILLFLDEPTSGLDSTSAFMVVNVLQRIAKS-G-SIVIMSIHQPSYRILSLLD- 180 (592)
Q Consensus 108 ~~~~LSgGerqRv~ia~~L----~~~p~lllLDEPtsgLD~~~~~~i~~~l~~la~~-g-~tvi~~~H~~~~~i~~~~D- 180 (592)
.+..||||||||+.++.++ +.+|+++++||||+|||+.++..+++.|++++++ | .++|+++|+.. +..+.+|
T Consensus 123 ~~~~LS~G~~q~~~i~~~la~~~~~~p~llllDEP~~~LD~~~~~~i~~~l~~~~~~~g~~~viiith~~~-~~~~~~~~ 201 (213)
T cd03277 123 DPHHQSGGERSVSTMLYLLSLQELTRCPFRVVDEINQGMDPTNERKVFDMLVETACKEGTSQYFLITPKLL-PGLNYHEK 201 (213)
T ss_pred chhhccccHHHHHHHHHHHHHHhccCCCEEEEecccccCCHHHHHHHHHHHHHHhhcCCCceEEEEchhhc-cCCcccCc
Confidence 3457999999998877554 5899999999999999999999999999999876 5 47999999976 4566776
Q ss_pred -eEEEecCCe
Q 048028 181 -RLIILSHGQ 189 (592)
Q Consensus 181 -~v~ll~~G~ 189 (592)
++++|++|+
T Consensus 202 ~~v~~l~~g~ 211 (213)
T cd03277 202 MTVLCVYNGP 211 (213)
T ss_pred eEEEEEecCc
Confidence 788888886
No 392
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.81 E-value=2.4e-20 Score=176.05 Aligned_cols=197 Identities=21% Similarity=0.331 Sum_probs=149.4
Q ss_pred EEECCCCCcHHHHHHHHhCCCCCC--CceeEEEECCEec---Ccccccc----eeEEEccCCC--CCCCCCHHHHHHHHH
Q 048028 2 AILGASGAGKTTLMDALAGRIEKE--SLQGAVTLNGEVL---ESKLLKI----ISAYVMQDDL--LFPMLTVEETLMFAA 70 (592)
Q Consensus 2 aI~GpsGaGKSTLL~~l~g~~~~~--~~~G~I~i~g~~~---~~~~~~~----~~~yv~Q~~~--l~~~lTV~E~l~f~~ 70 (592)
+++|.||||||-.-|+|+|..+.. .+.-...+++.++ +++..|+ .+++++|++. +-|.-+|...|.-..
T Consensus 37 GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~idLL~L~Pr~RRk~ig~~isMIFQeP~sCLDPS~~iG~QlIq~I 116 (330)
T COG4170 37 GLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLSPRERRKLVGHNVSMIFQEPQSCLDPSERVGRQLIQNI 116 (330)
T ss_pred eeeccCCCchhHHHHHHhcccccceEEEhhhcccccchhhcCChHHhhhhhccchhhhhcCchhhcChHHHHHHHHHhhC
Confidence 789999999999999999987631 1123345566554 2233333 3578999974 555555554443211
Q ss_pred HccC--CCC-CCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHH
Q 048028 71 EFRL--PRS-VTKTKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSA 147 (592)
Q Consensus 71 ~l~~--~~~-~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~ 147 (592)
.... .+. ..-.-+++++-++|.++|+.+..|-. ..++.+|.-||-|+|.||.|++.+|++|+.||||+.+|+.++
T Consensus 117 P~wTfkgrWWq~F~WrKrrAIeLLHrVGIKdHkDIM--~SYP~ElTeGE~QKVMIA~A~AnqPrLLIADEPTN~~e~~Tq 194 (330)
T COG4170 117 PAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDIM--RSYPYELTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQ 194 (330)
T ss_pred ccccccchHhhhhchhHHHHHHHHHHhccccHHHHH--HhCcchhccCcceeeeeehhhccCCceEeccCCCcccCccHH
Confidence 1000 000 00112457788999999998877644 457788999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH-cCCEEEEEecCChhHHHhhhceEEEecCCeEeeecChhhHHH
Q 048028 148 FMVVNVLQRIAK-SGSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNETPSNLAQ 201 (592)
Q Consensus 148 ~~i~~~l~~la~-~g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~~~~~~ 201 (592)
.++..+|.++.+ +|.||++++||.. .+-+.||++-+|.-|+-+.+++.+++.+
T Consensus 195 ~QifRLLs~mNQn~~TtILL~s~Dl~-~is~W~d~i~VlYCGQ~~ESa~~e~l~~ 248 (330)
T COG4170 195 AQIFRLLSRLNQNSNTTILLISHDLQ-MISQWADKINVLYCGQTVESAPSEELVT 248 (330)
T ss_pred HHHHHHHHHhhccCCceEEEEcccHH-HHHHHhhheEEEEecccccccchhHHhc
Confidence 999999999986 5889999999997 5899999999999999999999988753
No 393
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.81 E-value=8.7e-20 Score=193.21 Aligned_cols=184 Identities=21% Similarity=0.311 Sum_probs=121.3
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCcccccceeEEEccCCCCCCCCCHHHHHHHHH----------
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLESKLLKIISAYVMQDDLLFPMLTVEETLMFAA---------- 70 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~---------- 70 (592)
.||+|+|||||||+|++|+|+..|.+.+=.++.-.+++.+.... .+-++.+ +.-..+.-++.-+
T Consensus 104 ygLiG~nG~Gkst~L~~i~~~e~P~p~~~d~y~ls~e~~ps~~~-av~~v~~-----~~~~e~~rle~~~E~l~~~~d~~ 177 (614)
T KOG0927|consen 104 YGLIGPNGSGKSTFLRAIAGREVPIPEHIDFYLLSREIEPSEKQ-AVQAVVM-----ETDHERKRLEYLAEDLAQACDDK 177 (614)
T ss_pred EEEEcCCCCcHhHHHHHHhcCCCCCCcccchhhhcccCCCchHH-HHHHHhh-----hhHHHHHHHHHHHHHHHhhccch
Confidence 38999999999999999999988755333344333333221110 0000110 0000000010000
Q ss_pred --------HccCCCCCCHHHHHHHHHHHHHHcCC-cccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCC
Q 048028 71 --------EFRLPRSVTKTKKQERVEALINQLGL-RSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSG 141 (592)
Q Consensus 71 --------~l~~~~~~~~~~~~~~v~~~l~~lgL-~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsg 141 (592)
..|+ ..+..+..+.++.+++..+|. ++.+++. ..++|||+|.|+++||+|..+|++|+|||||+|
T Consensus 178 ~~~~l~~~~~r~-~~~d~~~~~~k~~~il~glgf~~~m~~k~-----~~~~SgGwrmR~aLAr~Lf~kP~LLLLDEPtnh 251 (614)
T KOG0927|consen 178 EKDELDELYERL-DEMDNDTFEAKAAKILHGLGFLSEMQDKK-----VKDLSGGWRMRAALARALFQKPDLLLLDEPTNH 251 (614)
T ss_pred hhhHHHHHHHHH-HhhCchhHHHHHHHHHHhcCCCHhHHHHH-----hhccCchHHHHHHHHHHHhcCCCEEEecCCccC
Confidence 0000 012233345566777777775 3445444 456999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHcCC-EEEEEecCChhHHHhhhceEEEecCCe-EeeecChhhHH
Q 048028 142 LDSTSAFMVVNVLQRIAKSGS-IVIMSIHQPSYRILSLLDRLIILSHGQ-SVYNETPSNLA 200 (592)
Q Consensus 142 LD~~~~~~i~~~l~~la~~g~-tvi~~~H~~~~~i~~~~D~v~ll~~G~-~v~~g~~~~~~ 200 (592)
||..+..-+-+.|.+. .+ ++++++|.-+ -+-..|.+|+-|.+++ +.|.|+-+...
T Consensus 252 LDleA~~wLee~L~k~---d~~~lVi~sh~QD-fln~vCT~Ii~l~~kkl~~y~Gnydqy~ 308 (614)
T KOG0927|consen 252 LDLEAIVWLEEYLAKY---DRIILVIVSHSQD-FLNGVCTNIIHLDNKKLIYYEGNYDQYV 308 (614)
T ss_pred CCHHHHHHHHHHHHhc---cCceEEEEecchh-hhhhHhhhhheecccceeeecCCHHHHh
Confidence 9999988888877765 33 7889999865 5888999999999998 56677776543
No 394
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=99.79 E-value=1.1e-18 Score=167.26 Aligned_cols=74 Identities=24% Similarity=0.339 Sum_probs=69.0
Q ss_pred CCHHHHHHHHHHHHHh----hCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCChhHHHhhhceEEEecC
Q 048028 112 VSGGERRRVSIGIHII----HDPILLFLDEPTSGLDSTSAFMVVNVLQRIAKSGSIVIMSIHQPSYRILSLLDRLIILSH 187 (592)
Q Consensus 112 LSgGerqRv~ia~~L~----~~p~lllLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~H~~~~~i~~~~D~v~ll~~ 187 (592)
||||||||++||++++ .+|+++++|||+++||+..+..+.+.|++++++|.++|+++|+++ ..+.+|+++.+.+
T Consensus 95 LS~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH~~~--~~~~adrvi~i~~ 172 (178)
T cd03239 95 LSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITLKKE--MFENADKLIGVLF 172 (178)
T ss_pred CCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHH--HHhhCCeEEEEEE
Confidence 9999999999999996 699999999999999999999999999999877899999999985 4578999999975
No 395
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.79 E-value=1.7e-19 Score=187.27 Aligned_cols=165 Identities=28% Similarity=0.429 Sum_probs=122.2
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEE-----------EECCEecCcccccc------ee----EEEccCCCCCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAV-----------TLNGEVLESKLLKI------IS----AYVMQDDLLFPM 59 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I-----------~i~g~~~~~~~~~~------~~----~yv~Q~~~l~~~ 59 (592)
++|+||||-||||-+|+|+|.+.|.- |+- .+.|..+.. .+++ ++ -||.--+..+..
T Consensus 103 ~GilG~NGiGKsTalkILaGel~PNL--G~~~~pp~wdeVi~~FrGtELq~-YF~~l~~g~~r~v~K~QYVd~iPk~~KG 179 (591)
T COG1245 103 VGILGPNGIGKSTALKILAGELKPNL--GRYEDPPSWDEVIKRFRGTELQN-YFKKLYEGELRAVHKPQYVDLIPKVVKG 179 (591)
T ss_pred EEEEcCCCccHHHHHHHHhCccccCC--CCCCCCCCHHHHHHHhhhhHHHH-HHHHHHcCCcceecchHHHHHHHHHhcc
Confidence 58999999999999999999998742 221 011111110 0000 01 122222222333
Q ss_pred CCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCC
Q 048028 60 LTVEETLMFAAEFRLPRSVTKTKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPT 139 (592)
Q Consensus 60 lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPt 139 (592)
||+|-|.- .+.+-+.+++++.|+|++..|+-|. .|||||-||++||.+++.+.+++++||||
T Consensus 180 -~v~elLk~------------~de~g~~devve~l~L~nvl~r~v~-----~LSGGELQr~aIaa~l~rdADvY~FDEps 241 (591)
T COG1245 180 -KVGELLKK------------VDERGKFDEVVERLGLENVLDRDVS-----ELSGGELQRVAIAAALLRDADVYFFDEPS 241 (591)
T ss_pred -hHHHHHHh------------hhhcCcHHHHHHHhcchhhhhhhhh-----hcCchHHHHHHHHHHHhccCCEEEEcCCc
Confidence 56665531 1223468899999999999887765 59999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHcCCEEEEEecCChhHHHhhhceEEEecC
Q 048028 140 SGLDSTSAFMVVNVLQRIAKSGSIVIMSIHQPSYRILSLLDRLIILSH 187 (592)
Q Consensus 140 sgLD~~~~~~i~~~l~~la~~g~tvi~~~H~~~~~i~~~~D~v~ll~~ 187 (592)
|-||...+....+.+++|++.+++||++.||.. -+--++|-|.++..
T Consensus 242 SyLDi~qRl~~ar~Irel~~~~k~ViVVEHDLa-vLD~lsD~vhI~YG 288 (591)
T COG1245 242 SYLDIRQRLNAARVIRELAEDGKYVIVVEHDLA-VLDYLSDFVHILYG 288 (591)
T ss_pred ccccHHHHHHHHHHHHHHhccCCeEEEEechHH-HHHHhhheeEEEec
Confidence 999999999999999999998999999999986 35557888888864
No 396
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.78 E-value=2.5e-19 Score=188.73 Aligned_cols=171 Identities=23% Similarity=0.344 Sum_probs=115.9
Q ss_pred EEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCcccccceeEEEccCC-CCCCCCCHHHHHHHHHHccCCCCCCH
Q 048028 2 AILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLESKLLKIISAYVMQDD-LLFPMLTVEETLMFAAEFRLPRSVTK 80 (592)
Q Consensus 2 aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~~~~~~~~~yv~Q~~-~l~~~lTV~E~l~f~~~l~~~~~~~~ 80 (592)
+|+|+||+|||||||+|+. |.|. +-++... .+ ..|++-.. .+-.+ |.++.+...- ..+..
T Consensus 110 GLvGrNG~GKsTLLRaia~--------~~v~--~f~veqE-~~--g~~t~~~~~~l~~D-~~~~dfl~~e-----~~l~~ 170 (582)
T KOG0062|consen 110 GLVGRNGIGKSTLLRAIAN--------GQVS--GFHVEQE-VR--GDDTEALQSVLESD-TERLDFLAEE-----KELLA 170 (582)
T ss_pred ceeCCCCCcHHHHHHHHHh--------cCcC--ccCchhh-ee--ccchHHHhhhhhcc-HHHHHHHHhh-----hhhhc
Confidence 7999999999999999996 2221 2222111 11 12333322 22233 3333332210 00111
Q ss_pred H-HHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Q 048028 81 T-KKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVNVLQRIAK 159 (592)
Q Consensus 81 ~-~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~la~ 159 (592)
. +..+..+++|..+|.++.+- ..+.+.+|||-|-|+++||||..+|+||||||||+.||..+..=+-+.|+.+
T Consensus 171 ~~~l~ei~~~~L~glGFt~emq----~~pt~slSGGWrMrlaLARAlf~~pDlLLLDEPTNhLDv~av~WLe~yL~t~-- 244 (582)
T KOG0062|consen 171 GLTLEEIYDKILAGLGFTPEMQ----LQPTKSLSGGWRMRLALARALFAKPDLLLLDEPTNHLDVVAVAWLENYLQTW-- 244 (582)
T ss_pred cchHHHHHHHHHHhCCCCHHHH----hccccccCcchhhHHHHHHHHhcCCCEEeecCCcccchhHHHHHHHHHHhhC--
Confidence 1 33444555899999975432 2345679999999999999999999999999999999999999888888876
Q ss_pred cCCEEEEEecCChhHHHhhhceEEEecCCeE-eeecChhhH
Q 048028 160 SGSIVIMSIHQPSYRILSLLDRLIILSHGQS-VYNETPSNL 199 (592)
Q Consensus 160 ~g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~-v~~g~~~~~ 199 (592)
+.|+|+++||-. -+-+.|..|+.+++-++ .|.|.-++.
T Consensus 245 -~~T~liVSHDr~-FLn~V~tdIIH~~~~kL~~YkGN~~~F 283 (582)
T KOG0062|consen 245 -KITSLIVSHDRN-FLNTVCTDIIHLENLKLDYYKGNYSQF 283 (582)
T ss_pred -CceEEEEeccHH-HHHHHHHHHHHHhhhhhhhhcCcHHHH
Confidence 479999999965 47778888888877665 466765544
No 397
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=99.78 E-value=2e-19 Score=175.73 Aligned_cols=82 Identities=18% Similarity=0.240 Sum_probs=73.3
Q ss_pred CCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHH-HHHHHHHHcCCEEEEEecCChhHHHhhhceEEEecCC
Q 048028 110 RGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVV-NVLQRIAKSGSIVIMSIHQPSYRILSLLDRLIILSHG 188 (592)
Q Consensus 110 ~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~-~~l~~la~~g~tvi~~~H~~~~~i~~~~D~v~ll~~G 188 (592)
..+|+||||++.|+++ +.+|+++++|||++|||+.....+. ..++++.+.|.++|++||++ ++.+++|++..|.+|
T Consensus 90 s~fs~g~~~~~~i~~~-~~~p~llllDEp~~glD~~~~~~i~~~~l~~l~~~~~~vi~~tH~~--~l~~~~d~~~~l~~g 166 (200)
T cd03280 90 STFSSHMKNIARILQH-ADPDSLVLLDELGSGTDPVEGAALAIAILEELLERGALVIATTHYG--ELKAYAYKREGVENA 166 (200)
T ss_pred chHHHHHHHHHHHHHh-CCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEECCHH--HHHHHHhcCCCeEEE
Confidence 3599999999999987 4899999999999999999999996 57888877789999999984 578999999999999
Q ss_pred eEeeec
Q 048028 189 QSVYNE 194 (592)
Q Consensus 189 ~~v~~g 194 (592)
++.+.+
T Consensus 167 ~l~~~~ 172 (200)
T cd03280 167 SMEFDP 172 (200)
T ss_pred EEEEec
Confidence 998874
No 398
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.77 E-value=1.9e-18 Score=177.95 Aligned_cols=159 Identities=27% Similarity=0.399 Sum_probs=121.0
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCcccccceeEEEccCC--CCCCCCCHHHHHHHHHHccCCCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLESKLLKIISAYVMQDD--LLFPMLTVEETLMFAAEFRLPRSV 78 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~~~~~~~~~yv~Q~~--~l~~~lTV~E~l~f~~~l~~~~~~ 78 (592)
+||+||||.||||||+.|.|.+.|. .|+..- ..+-.+|+..|.. .|-..-|.-|.|.-. + ++
T Consensus 616 iaIVGPNGVGKSTlLkLL~Gkl~P~--~GE~RK--------nhrL~iG~FdQh~~E~L~~Eetp~EyLqr~--F----Nl 679 (807)
T KOG0066|consen 616 IAIVGPNGVGKSTLLKLLIGKLDPN--DGELRK--------NHRLRIGWFDQHANEALNGEETPVEYLQRK--F----NL 679 (807)
T ss_pred eEEECCCCccHHHHHHHHhcCCCCC--cchhhc--------cceeeeechhhhhHHhhccccCHHHHHHHh--c----CC
Confidence 5899999999999999999998864 376542 2344578887763 455666777766422 2 22
Q ss_pred CHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 048028 79 TKTKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVNVLQRIA 158 (592)
Q Consensus 79 ~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~la 158 (592)
+. +.+...|-.+||...++|. .++.||||||-||++|.--+..|+||+|||||++||..+...+.+.|++.
T Consensus 680 py----q~ARK~LG~fGL~sHAHTi----kikdLSGGQKaRValaeLal~~PDvlILDEPTNNLDIESIDALaEAIney- 750 (807)
T KOG0066|consen 680 PY----QEARKQLGTFGLASHAHTI----KIKDLSGGQKARVALAELALGGPDVLILDEPTNNLDIESIDALAEAINEY- 750 (807)
T ss_pred Ch----HHHHHHhhhhhhhhccceE----eeeecCCcchHHHHHHHHhcCCCCEEEecCCCCCcchhhHHHHHHHHHhc-
Confidence 32 3456678899999888875 35679999999999999999999999999999999999999999888875
Q ss_pred HcCCEEEEEecCChhHHHhhhceEEEecC
Q 048028 159 KSGSIVIMSIHQPSYRILSLLDRLIILSH 187 (592)
Q Consensus 159 ~~g~tvi~~~H~~~~~i~~~~D~v~ll~~ 187 (592)
...||+++||-.. +.+.--.+.++.+
T Consensus 751 --~GgVi~VsHDeRL-i~eT~C~LwVvE~ 776 (807)
T KOG0066|consen 751 --NGGVIMVSHDERL-IVETDCNLWVVEN 776 (807)
T ss_pred --cCcEEEEecccce-eeecCceEEEEcc
Confidence 3479999999763 4444344555544
No 399
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=99.76 E-value=3.5e-18 Score=182.35 Aligned_cols=172 Identities=19% Similarity=0.225 Sum_probs=129.9
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCcccccceeEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCH
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLESKLLKIISAYVMQDDLLFPMLTVEETLMFAAEFRLPRSVTK 80 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~ 80 (592)
+.|+||||||||+|||+|+|+-+. .+|.+.--.+.-. +.+-|+||.|.+.-. |.||.+.|...--. ..++
T Consensus 464 LLItG~sG~GKtSLlRvlggLWp~--~~G~l~k~~~~~~-----~~lfflPQrPYmt~G-TLRdQvIYP~~~~~--~~~~ 533 (659)
T KOG0060|consen 464 LLITGPSGCGKTSLLRVLGGLWPS--TGGKLTKPTDGGP-----KDLFFLPQRPYMTLG-TLRDQVIYPLKAED--MDSK 533 (659)
T ss_pred EEEECCCCCchhHHHHHHhccccc--CCCeEEecccCCC-----CceEEecCCCCcccc-chhheeeccCcccc--cccc
Confidence 469999999999999999999763 4588865332211 336799999987766 99999988632111 1122
Q ss_pred HHHHHHHHHHHHHcCCccccccc------ccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHH
Q 048028 81 TKKQERVEALINQLGLRSAAKTF------IGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVNVL 154 (592)
Q Consensus 81 ~~~~~~v~~~l~~lgL~~~~~~~------vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l 154 (592)
....+++.+.|+.++|.|..+.. +--+....||+||+||++.||-+.++|++-+|||.||++|......+.+.+
T Consensus 534 ~~~d~~i~r~Le~v~L~hl~~r~ggld~~~~~dW~dvLS~GEqQRLa~ARLfy~kPk~AiLDE~TSAv~~dvE~~~Yr~~ 613 (659)
T KOG0060|consen 534 SASDEDILRILENVQLGHLLEREGGLDQQVDWDWMDVLSPGEQQRLAFARLFYHKPKFAILDECTSAVTEDVEGALYRKC 613 (659)
T ss_pred CCCHHHHHHHHHHhhhhhHHHHhCCCCchhhccHHhhcCHHHHHHHHHHHHHhcCCceEEeechhhhccHHHHHHHHHHH
Confidence 22345677788877777655332 111234579999999999999999999999999999999999999888877
Q ss_pred HHHHHcCCEEEEEecCChhHHHhhhceEEEecC
Q 048028 155 QRIAKSGSIVIMSIHQPSYRILSLLDRLIILSH 187 (592)
Q Consensus 155 ~~la~~g~tvi~~~H~~~~~i~~~~D~v~ll~~ 187 (592)
++ .|.|.|-+.|.++ +.+.=|.++-|+.
T Consensus 614 r~---~giT~iSVgHRkS--L~kfHd~~L~~~g 641 (659)
T KOG0060|consen 614 RE---MGITFISVGHRKS--LWKFHDYVLRMDG 641 (659)
T ss_pred HH---cCCeEEEeccHHH--HHhhhhEEEEecC
Confidence 76 4899999999986 5666688888875
No 400
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.75 E-value=5.9e-18 Score=173.57 Aligned_cols=77 Identities=22% Similarity=0.354 Sum_probs=69.2
Q ss_pred CCCCHHHHHHHHHHHHHhh----CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCChhHHHhhhceEEEe
Q 048028 110 RGVSGGERRRVSIGIHIIH----DPILLFLDEPTSGLDSTSAFMVVNVLQRIAKSGSIVIMSIHQPSYRILSLLDRLIIL 185 (592)
Q Consensus 110 ~~LSgGerqRv~ia~~L~~----~p~lllLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~H~~~~~i~~~~D~v~ll 185 (592)
..||||||||+++|++++. +|+++++||||+|||+.....+.+.++++.+ +.++|+++|+|. +.+.+|+++.|
T Consensus 169 ~~lS~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~~~l~~~~~-~~tii~isH~~~--~~~~~d~~~~l 245 (276)
T cd03241 169 KIASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGKKLKELSR-SHQVLCITHLPQ--VAAMADNHFLV 245 (276)
T ss_pred hhcChhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHHHHHHHHhC-CCEEEEEechHH--HHHhcCcEEEE
Confidence 3599999999999997654 9999999999999999999999999999865 789999999986 56899999999
Q ss_pred cCCe
Q 048028 186 SHGQ 189 (592)
Q Consensus 186 ~~G~ 189 (592)
.+|.
T Consensus 246 ~~~~ 249 (276)
T cd03241 246 EKEV 249 (276)
T ss_pred EEec
Confidence 8763
No 401
>KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription]
Probab=99.75 E-value=7.9e-18 Score=158.71 Aligned_cols=181 Identities=27% Similarity=0.346 Sum_probs=131.9
Q ss_pred EEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCc-c--cccceeEEEcc----------CCCCCCCCCHHHHHHH
Q 048028 2 AILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLES-K--LLKIISAYVMQ----------DDLLFPMLTVEETLMF 68 (592)
Q Consensus 2 aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~-~--~~~~~~~yv~Q----------~~~l~~~lTV~E~l~f 68 (592)
.++|.||||||||||+|+|..-... |.|.++|++.-. . .-.....|+-- +-.+-..+++.+ +.|
T Consensus 44 LlVGaNGaGKtTlLKiLsGKhmv~~--~~v~VlgrsaFhDt~l~~Sgdl~YLGgeW~~~~~~agevplq~D~sae~-mif 120 (291)
T KOG2355|consen 44 LLVGANGAGKTTLLKILSGKHMVGG--GVVQVLGRSAFHDTSLESSGDLSYLGGEWSKTVGIAGEVPLQGDISAEH-MIF 120 (291)
T ss_pred EEEecCCCchhhhHHHhcCcccccC--CeEEEcCcCccccccccccCceeEecccccccccccccccccccccHHH-HHh
Confidence 5899999999999999999854443 899999976411 0 00111223222 222333556644 445
Q ss_pred HHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHH
Q 048028 69 AAEFRLPRSVTKTKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAF 148 (592)
Q Consensus 69 ~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~ 148 (592)
+..- .+. +|-+++++.|.++-.- +.+.+|-||||||.|++.|++.=++|+|||-|-.||..++.
T Consensus 121 gV~g------~dp---~Rre~LI~iLDIdl~W-------RmHkvSDGqrRRVQicMGLL~PfkVLLLDEVTVDLDVlARa 184 (291)
T KOG2355|consen 121 GVGG------DDP---ERREKLIDILDIDLRW-------RMHKVSDGQRRRVQICMGLLKPFKVLLLDEVTVDLDVLARA 184 (291)
T ss_pred hccC------CCh---hHhhhhhhheeccceE-------EEeeccccchhhhHHHHhcccceeEEEeeeeEeehHHHHHH
Confidence 4321 111 4556777777765221 22459999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH-cCCEEEEEecCChhHHHhhhceEEEecCCeEeeecChhhHHHH
Q 048028 149 MVVNVLQRIAK-SGSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNETPSNLAQF 202 (592)
Q Consensus 149 ~i~~~l~~la~-~g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~~~~~~~ 202 (592)
.+++.+++-.+ +|.||+..||--+ -+.....++..+++|+++-.-+.+++.++
T Consensus 185 dLLeFlkeEce~RgatIVYATHIFD-GLe~Wpthl~yi~~Gkl~~~l~~~~i~e~ 238 (291)
T KOG2355|consen 185 DLLEFLKEECEQRGATIVYATHIFD-GLETWPTHLVYIKSGKLVDNLKYQKIKEF 238 (291)
T ss_pred HHHHHHHHHHhhcCcEEEEEeeecc-chhhcchhEEEecCCeeeeccccchhhhh
Confidence 99999999886 5999999999987 47888999999999999876555555443
No 402
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.75 E-value=6e-18 Score=196.71 Aligned_cols=136 Identities=24% Similarity=0.401 Sum_probs=109.8
Q ss_pred CCCCCHHHHHHHHHHccCCCCCC------HHHHHHHHHHHHHHcCCccc-ccccccCCCCCCCCHHHHHHHHHHHHHhhC
Q 048028 57 FPMLTVEETLMFAAEFRLPRSVT------KTKKQERVEALINQLGLRSA-AKTFIGDERHRGVSGGERRRVSIGIHIIHD 129 (592)
Q Consensus 57 ~~~lTV~E~l~f~~~l~~~~~~~------~~~~~~~v~~~l~~lgL~~~-~~~~vg~~~~~~LSgGerqRv~ia~~L~~~ 129 (592)
+..+||.|.+.|.-.+..+.... -++..++++ .++.+||.+. .|+.+ ..|||||||||.||++|..+
T Consensus 434 ~~~~~v~~~~~~~~~~~~~~~~~~~a~~~~~~i~~rl~-~L~~vGL~~l~l~r~~-----~~LSgGE~QRv~LA~aL~~~ 507 (943)
T PRK00349 434 VSELSIGEALEFFENLKLSEQEAKIAEPILKEIRERLK-FLVDVGLDYLTLSRSA-----GTLSGGEAQRIRLATQIGSG 507 (943)
T ss_pred HhcCcHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHH-HhhccccCCCCCCCch-----hhCCHHHHHHHHHHHHHhhC
Confidence 45689999999855443221000 012334454 6888899765 56555 45999999999999999999
Q ss_pred C--cEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCChhHHHhhhceEEEe------cCCeEeeecChhhHH
Q 048028 130 P--ILLFLDEPTSGLDSTSAFMVVNVLQRIAKSGSIVIMSIHQPSYRILSLLDRLIIL------SHGQSVYNETPSNLA 200 (592)
Q Consensus 130 p--~lllLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~H~~~~~i~~~~D~v~ll------~~G~~v~~g~~~~~~ 200 (592)
| ++++|||||+|||+..+..+.+.|++++++|.|||+++|+++ ++ ..+|+|++| ++|++++.|+++++.
T Consensus 508 ~~~~llILDEPtagLd~~~~~~L~~~L~~L~~~G~TVIvVeH~~~-~i-~~aD~vi~LgpgaG~~~G~iv~~g~~~e~~ 584 (943)
T PRK00349 508 LTGVLYVLDEPSIGLHQRDNDRLIETLKHLRDLGNTLIVVEHDED-TI-RAADYIVDIGPGAGVHGGEVVASGTPEEIM 584 (943)
T ss_pred CCCcEEEecCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HH-HhCCEEEEeccccCCCCCEEeeccCHHHHh
Confidence 7 999999999999999999999999999888999999999987 45 469999999 899999999998873
No 403
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.75 E-value=9.9e-18 Score=194.53 Aligned_cols=136 Identities=26% Similarity=0.414 Sum_probs=106.9
Q ss_pred CCCCCHHHHHHHHHHccCCCCCCH------HHHHHHHHHHHHHcCCccc-ccccccCCCCCCCCHHHHHHHHHHHHHhhC
Q 048028 57 FPMLTVEETLMFAAEFRLPRSVTK------TKKQERVEALINQLGLRSA-AKTFIGDERHRGVSGGERRRVSIGIHIIHD 129 (592)
Q Consensus 57 ~~~lTV~E~l~f~~~l~~~~~~~~------~~~~~~v~~~l~~lgL~~~-~~~~vg~~~~~~LSgGerqRv~ia~~L~~~ 129 (592)
+-.|||.|.+.|...+.......+ ++..+++ +.+..+||... .++ .+..|||||+|||.||++|+.+
T Consensus 432 ~~~~~v~~~~~~~~~l~~~~~~~~ia~~i~~~i~~rl-~~L~~vgL~~l~l~r-----~~~tLSGGE~QRv~LA~aL~~~ 505 (924)
T TIGR00630 432 VSELSIREAHEFFNQLDLTPEEKKIAEEILKEIKERL-GFLIDVGLDYLTLSR-----AAGTLSGGEAQRIRLATQIGSG 505 (924)
T ss_pred HhcCCHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHH-HhHhhccccccccCC-----CcCcCCHHHHHHHHHHHHHhhC
Confidence 346899999988766532210000 0111222 23666788654 444 4457999999999999999998
Q ss_pred C--cEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCChhHHHhhhceEEEe------cCCeEeeecChhhHH
Q 048028 130 P--ILLFLDEPTSGLDSTSAFMVVNVLQRIAKSGSIVIMSIHQPSYRILSLLDRLIIL------SHGQSVYNETPSNLA 200 (592)
Q Consensus 130 p--~lllLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~H~~~~~i~~~~D~v~ll------~~G~~v~~g~~~~~~ 200 (592)
| ++++|||||+|||+.....+.+.|++++++|.|||+++|+++ .+ ..+|++++| ++|++++.|+++++.
T Consensus 506 ~~~~llILDEPtagLD~~~~~~L~~~L~~L~~~G~TVIvVeHd~~-~i-~~aD~vi~LgpgaG~~~G~Iv~~g~~~el~ 582 (924)
T TIGR00630 506 LTGVLYVLDEPSIGLHQRDNERLINTLKRLRDLGNTVIVVEHDEE-TI-RAADYVIDIGPGAGIHGGEVVASGTPEEIL 582 (924)
T ss_pred CCCcEEEEcCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHH-HH-hhCCEEEEecccccCCCCEEeeccCHHHHh
Confidence 6 899999999999999999999999999988999999999986 45 589999999 899999999998863
No 404
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=99.75 E-value=1.9e-18 Score=168.55 Aligned_cols=133 Identities=18% Similarity=0.258 Sum_probs=97.8
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCcccccceeEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCH
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLESKLLKIISAYVMQDDLLFPMLTVEETLMFAAEFRLPRSVTK 80 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~ 80 (592)
++|+||||||||||||+|+|... +...|.++... .+++|.+.+++.+|+.|++.++.. ...
T Consensus 28 ~~ltGpNg~GKSTllr~i~~~~~-------l~~~G~~v~a~------~~~~q~~~l~~~~~~~d~l~~~~s------~~~ 88 (199)
T cd03283 28 ILITGSNMSGKSTFLRTIGVNVI-------LAQAGAPVCAS------SFELPPVKIFTSIRVSDDLRDGIS------YFY 88 (199)
T ss_pred EEEECCCCCChHHHHHHHHHHHH-------HHHcCCEEecC------ccCcccceEEEeccchhccccccC------hHH
Confidence 47999999999999999998642 11245444321 366778889999999999976531 112
Q ss_pred HHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHH-HHHHHHHH
Q 048028 81 TKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVV-NVLQRIAK 159 (592)
Q Consensus 81 ~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~-~~l~~la~ 159 (592)
.+ .+++.++++.+++ .+|+++++|||++|+|+..+..+. ..++++.+
T Consensus 89 ~e-~~~~~~iL~~~~~-------------------------------~~p~llllDEp~~glD~~~~~~l~~~ll~~l~~ 136 (199)
T cd03283 89 AE-LRRLKEIVEKAKK-------------------------------GEPVLFLLDEIFKGTNSRERQAASAAVLKFLKN 136 (199)
T ss_pred HH-HHHHHHHHHhccC-------------------------------CCCeEEEEecccCCCCHHHHHHHHHHHHHHHHH
Confidence 22 3567888887762 689999999999999999998775 47888887
Q ss_pred cCCEEEEEecCChhHHHhh--hceEEEe
Q 048028 160 SGSIVIMSIHQPSYRILSL--LDRLIIL 185 (592)
Q Consensus 160 ~g~tvi~~~H~~~~~i~~~--~D~v~ll 185 (592)
.|.++|++||+++ .+... .+++-.+
T Consensus 137 ~~~tiiivTH~~~-~~~~~~~~~~v~~~ 163 (199)
T cd03283 137 KNTIGIISTHDLE-LADLLDLDSAVRNY 163 (199)
T ss_pred CCCEEEEEcCcHH-HHHhhhcCCCeEEE
Confidence 7899999999986 34433 3444443
No 405
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.74 E-value=7.6e-18 Score=177.66 Aligned_cols=172 Identities=25% Similarity=0.377 Sum_probs=130.6
Q ss_pred EEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCcccccceeEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHH
Q 048028 2 AILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLESKLLKIISAYVMQDDLLFPMLTVEETLMFAAEFRLPRSVTKT 81 (592)
Q Consensus 2 aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~ 81 (592)
+++|+||+||||++|++.|-..|. +|.+.+++ |.+++|-.|...=+-.+.|.+ +.+..+.+ | ..
T Consensus 394 ~~vg~ng~gkst~lKi~~~~l~~~--rgi~~~~~--------r~ri~~f~Qhhvd~l~~~v~~-vd~~~~~~-p-G~--- 457 (582)
T KOG0062|consen 394 SRVGENGDGKSTLLKILKGDLTPT--RGIVGRHP--------RLRIKYFAQHHVDFLDKNVNA-VDFMEKSF-P-GK--- 457 (582)
T ss_pred heeccCchhHHHHHHHHhccCCcc--cceeeecc--------cceecchhHhhhhHHHHHhHH-HHHHHHhC-C-CC---
Confidence 689999999999999999987643 47776543 455788888754443445543 33434433 2 12
Q ss_pred HHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcC
Q 048028 82 KKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVNVLQRIAKSG 161 (592)
Q Consensus 82 ~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~la~~g 161 (592)
.++.+++-+..+||+... ......+||||||-||++|.....+|.+|+|||||+.||..+-..+.+.|+.. +
T Consensus 458 -~~ee~r~hl~~~Gl~g~l----a~~si~~LSGGQKsrvafA~~~~~~PhlLVLDEPTNhLD~dsl~AL~~Al~~F---~ 529 (582)
T KOG0062|consen 458 -TEEEIRRHLGSFGLSGEL----ALQSIASLSGGQKSRVAFAACTWNNPHLLVLDEPTNHLDRDSLGALAKALKNF---N 529 (582)
T ss_pred -CHHHHHHHHHhcCCCchh----hhccccccCCcchhHHHHHHHhcCCCcEEEecCCCccccHHHHHHHHHHHHhc---C
Confidence 235577788999997432 12335679999999999999999999999999999999999999999888876 3
Q ss_pred CEEEEEecCChhHHHhhhceEEEecCCeEee-ecChhh
Q 048028 162 SIVIMSIHQPSYRILSLLDRLIILSHGQSVY-NETPSN 198 (592)
Q Consensus 162 ~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~-~g~~~~ 198 (592)
..||+++|+.+ -+..+|+.+.+.++|++.- .|...+
T Consensus 530 GGVv~VSHd~~-fi~~~c~E~Wvve~g~vt~ieg~~~~ 566 (582)
T KOG0062|consen 530 GGVVLVSHDEE-FISSLCKELWVVEDGKVTPIEGGIDK 566 (582)
T ss_pred CcEEEEECcHH-HHhhcCceeEEEcCCcEEeeeccHHH
Confidence 47999999987 5889999999999999853 344433
No 406
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=99.74 E-value=6.7e-18 Score=159.44 Aligned_cols=74 Identities=27% Similarity=0.428 Sum_probs=68.0
Q ss_pred CCHHHHHHHHHHHHHhh----CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCChhHHHhhhceEEEecC
Q 048028 112 VSGGERRRVSIGIHIIH----DPILLFLDEPTSGLDSTSAFMVVNVLQRIAKSGSIVIMSIHQPSYRILSLLDRLIILSH 187 (592)
Q Consensus 112 LSgGerqRv~ia~~L~~----~p~lllLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~H~~~~~i~~~~D~v~ll~~ 187 (592)
||+||+||+++|++|.. +|+++++|||++|+|+.....+.+.+.++.++|.++|++||+++ +.+.+|+++.|..
T Consensus 78 lS~G~~~~~~la~~L~~~~~~~~~llllDEp~~gld~~~~~~l~~~l~~~~~~~~~vii~TH~~~--~~~~~d~~~~l~~ 155 (162)
T cd03227 78 LSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVKGAQVIVITHLPE--LAELADKLIHIKK 155 (162)
T ss_pred ccccHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHH--HHHhhhhEEEEEE
Confidence 99999999999999987 78999999999999999999999999998766889999999986 5678999999864
No 407
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=99.69 E-value=2e-16 Score=174.71 Aligned_cols=128 Identities=31% Similarity=0.465 Sum_probs=106.4
Q ss_pred CCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCC---cEEEE
Q 048028 59 MLTVEETLMFAAEFRLPRSVTKTKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDP---ILLFL 135 (592)
Q Consensus 59 ~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p---~lllL 135 (592)
.|||.|...|.... .+-.+.-+.|..+||.-.. +| +....|||||.|||-+|.+|.... .+.+|
T Consensus 783 ~MTveEA~~FF~~~---------p~I~rkLqtL~dVGLgYi~---LG-QpatTLSGGEaQRvKLA~EL~k~~tg~TlYiL 849 (935)
T COG0178 783 DMTVEEALEFFEAI---------PKIARKLQTLVDVGLGYIK---LG-QPATTLSGGEAQRVKLAKELSKRSTGKTLYIL 849 (935)
T ss_pred hccHHHHHHHHhcc---------hHHHHHHHHHHHcCcceEe---cC-CccccccchHHHHHHHHHHHhhccCCCeEEEe
Confidence 57888887775421 1233445667778887543 33 456689999999999999999877 89999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCChhHHHhhhceEEEec------CCeEeeecChhhHHH
Q 048028 136 DEPTSGLDSTSAFMVVNVLQRIAKSGSIVIMSIHQPSYRILSLLDRLIILS------HGQSVYNETPSNLAQ 201 (592)
Q Consensus 136 DEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~H~~~~~i~~~~D~v~ll~------~G~~v~~g~~~~~~~ 201 (592)
||||+||-.....++++.|.+|.++|.|||++.|+.+ +...+|.|+=|- .|+++..|+|+++.+
T Consensus 850 DEPTTGLH~~Di~kLl~VL~rLvd~GnTViVIEHNLd--VIk~AD~IIDLGPeGG~~GG~iva~GTPeeva~ 919 (935)
T COG0178 850 DEPTTGLHFDDIKKLLEVLHRLVDKGNTVIVIEHNLD--VIKTADWIIDLGPEGGDGGGEIVASGTPEEVAK 919 (935)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecccc--eEeecCEEEEcCCCCCCCCceEEEecCHHHHHh
Confidence 9999999999999999999999999999999999985 789999999983 479999999999864
No 408
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.66 E-value=6.6e-16 Score=187.05 Aligned_cols=134 Identities=25% Similarity=0.515 Sum_probs=105.1
Q ss_pred CCCCCHHHHHHHHHHccCCCCCCHHH----HHHHHHHHHHHcCCccc-ccccccCCCCCCCCHHHHHHHHHHHHHhhCC-
Q 048028 57 FPMLTVEETLMFAAEFRLPRSVTKTK----KQERVEALINQLGLRSA-AKTFIGDERHRGVSGGERRRVSIGIHIIHDP- 130 (592)
Q Consensus 57 ~~~lTV~E~l~f~~~l~~~~~~~~~~----~~~~v~~~l~~lgL~~~-~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p- 130 (592)
+..|++.|.+.|...+...... .++ ..+|. +.|..+||.+. .|+.+ ..|||||+|||.||++|..+|
T Consensus 424 ~~~m~i~~l~~~~~~l~~~~~~-~~~il~ei~~RL-~~L~~vGL~~L~ldR~~-----~tLSGGE~QRV~LAraL~~~p~ 496 (1809)
T PRK00635 424 FQQMSLQELFIFLSQLPSKSLS-IEEVLQGLKSRL-SILIDLGLPYLTPERAL-----ATLSGGEQERTALAKHLGAELI 496 (1809)
T ss_pred HhcCCHHHHHHHHHhhhhhhHH-HHHHHHHHHHHH-HHHHhccccCCCCCCch-----hhCCHHHHHHHHHHHHHhcCCC
Confidence 3467888888877655310000 011 11222 23446788765 45544 469999999999999999999
Q ss_pred -cEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCChhHHHhhhceEEEec------CCeEeeecChhhH
Q 048028 131 -ILLFLDEPTSGLDSTSAFMVVNVLQRIAKSGSIVIMSIHQPSYRILSLLDRLIILS------HGQSVYNETPSNL 199 (592)
Q Consensus 131 -~lllLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~H~~~~~i~~~~D~v~ll~------~G~~v~~g~~~~~ 199 (592)
++++|||||+|||+.++..+.+.|++++++|.|||+++|+++ +.+.+|++++|. +|++++.|+++++
T Consensus 497 g~lLILDEPTagLD~~~~~~L~~lL~~L~~~G~TVIvVeHd~~--vi~~aDrVi~L~pGag~~gG~Iv~~G~~~ei 570 (1809)
T PRK00635 497 GITYILDEPSIGLHPQDTHKLINVIKKLRDQGNTVLLVEHDEQ--MISLADRIIDIGPGAGIFGGEVLFNGSPREF 570 (1809)
T ss_pred CcEEEEECCccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHH--HHHhCCEEEEEcCCcccCCCEEEEecCHHHH
Confidence 899999999999999999999999999988999999999986 668999999996 7899999998876
No 409
>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage. When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.66 E-value=1.1e-15 Score=156.26 Aligned_cols=77 Identities=13% Similarity=0.216 Sum_probs=63.6
Q ss_pred CCCCCHHHHHHHHHHHHHh---------hCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCChhHHHhhh
Q 048028 109 HRGVSGGERRRVSIGIHII---------HDPILLFLDEPTSGLDSTSAFMVVNVLQRIAKSGSIVIMSIHQPSYRILSLL 179 (592)
Q Consensus 109 ~~~LSgGerqRv~ia~~L~---------~~p~lllLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~H~~~~~i~~~~ 179 (592)
.+-+|+||||+++||++|+ .+|+++++||||++||+..+..+.+.++++. .+++++|+.. ++..++
T Consensus 181 ~~~lS~Gq~~~~~la~~la~~~~~~~~~~~~~illlDEp~a~LD~~~~~~l~~~l~~~~----q~ii~~~~~~-~~~~~~ 255 (270)
T cd03242 181 ADFGSQGQQRTLALALKLAEIQLIKEVSGEYPVLLLDDVLAELDLGRQAALLDAIEGRV----QTFVTTTDLA-DFDALW 255 (270)
T ss_pred HHhCChHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEcCcchhcCHHHHHHHHHHhhcCC----CEEEEeCCch-hccchh
Confidence 4458999999999999985 7999999999999999999999999998753 3556666544 466666
Q ss_pred ---ceEEEecCCeE
Q 048028 180 ---DRLIILSHGQS 190 (592)
Q Consensus 180 ---D~v~ll~~G~~ 190 (592)
++++.+++|++
T Consensus 256 ~~~~~i~~l~~g~i 269 (270)
T cd03242 256 LRRAQIFRVDAGTL 269 (270)
T ss_pred ccCccEEEEeCcEE
Confidence 78999999985
No 410
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.66 E-value=7.7e-17 Score=159.84 Aligned_cols=136 Identities=18% Similarity=0.224 Sum_probs=99.2
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCcccccceeE-EEccCCCCCCCCCHHHHHHHHHHccCCCCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLESKLLKIISA-YVMQDDLLFPMLTVEETLMFAAEFRLPRSVT 79 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~~~~~~~~~-yv~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~ 79 (592)
++|.||||+||||||++++-. .+-..+| |||.+...++
T Consensus 33 ~~l~G~n~~GKstll~~i~~~--------------------~~la~~g~~vpa~~~~~~--------------------- 71 (222)
T cd03285 33 LIITGPNMGGKSTYIRQIGVI--------------------VLMAQIGCFVPCDSADIP--------------------- 71 (222)
T ss_pred EEEECCCCCChHHHHHHHHHH--------------------HHHHHhCCCcCcccEEEe---------------------
Confidence 379999999999999999821 0011122 5554332111
Q ss_pred HHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHH--hhCCcEEEEeCC---CCCCCHHHHHHHHHHH
Q 048028 80 KTKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHI--IHDPILLFLDEP---TSGLDSTSAFMVVNVL 154 (592)
Q Consensus 80 ~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L--~~~p~lllLDEP---tsgLD~~~~~~i~~~l 154 (592)
.++++++.+++++.. .+++|.|+++++.+++++ +.+|+++||||| |++||+..... ..+
T Consensus 72 ------~~~~il~~~~l~d~~--------~~~lS~~~~e~~~~a~il~~~~~~sLvLLDEp~~gT~~lD~~~~~~--~il 135 (222)
T cd03285 72 ------IVDCILARVGASDSQ--------LKGVSTFMAEMLETAAILKSATENSLIIIDELGRGTSTYDGFGLAW--AIA 135 (222)
T ss_pred ------ccceeEeeeccccch--------hcCcChHHHHHHHHHHHHHhCCCCeEEEEecCcCCCChHHHHHHHH--HHH
Confidence 133455566665432 246999999999999999 899999999999 99999988753 334
Q ss_pred HHHHH-cCCEEEEEecCChhHHHhhhceEEEecCCeEeeecC
Q 048028 155 QRIAK-SGSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNET 195 (592)
Q Consensus 155 ~~la~-~g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~ 195 (592)
+.+.+ .|.++|++||+ .++.+++|++..+++|++...++
T Consensus 136 ~~l~~~~~~~vlisTH~--~el~~~~~~~~~i~~g~~~~~~~ 175 (222)
T cd03285 136 EYIATQIKCFCLFATHF--HELTALADEVPNVKNLHVTALTD 175 (222)
T ss_pred HHHHhcCCCeEEEEech--HHHHHHhhcCCCeEEEEEEEEEe
Confidence 55554 48899999997 36889999999999999987664
No 411
>KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism]
Probab=99.64 E-value=2.7e-16 Score=165.87 Aligned_cols=164 Identities=21% Similarity=0.330 Sum_probs=113.1
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCcccccceeEEEccCCCCCCCCCHHHHHHHHHH---ccCCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLESKLLKIISAYVMQDDLLFPMLTVEETLMFAAE---FRLPRS 77 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~---l~~~~~ 77 (592)
+.|.||||||||+|.++|+|+-+- ..|...+ ..+..+-|+||.|.+- .-|.||.+-+.-. ++ .+.
T Consensus 511 LLItGPNGCGKSSLfRILggLWPv--y~g~L~~--------P~~~~mFYIPQRPYms-~gtlRDQIIYPdS~e~~~-~kg 578 (728)
T KOG0064|consen 511 LLITGPNGCGKSSLFRILGGLWPV--YNGLLSI--------PRPNNIFYIPQRPYMS-GGTLRDQIIYPDSSEQMK-RKG 578 (728)
T ss_pred EEEECCCCccHHHHHHHHhccCcc--cCCeeec--------CCCcceEeccCCCccC-cCcccceeecCCcHHHHH-hcC
Confidence 368999999999999999999762 2343322 1223478999998765 3477777654210 00 011
Q ss_pred CCHHHHHHHHHHHHHHcCCcccccccccC----CCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHH
Q 048028 78 VTKTKKQERVEALINQLGLRSAAKTFIGD----ERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVNV 153 (592)
Q Consensus 78 ~~~~~~~~~v~~~l~~lgL~~~~~~~vg~----~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~ 153 (592)
.+ ++..+.+|+.+.|++.+..-.|= +...-||||||||+.+||.+-++|+.-+|||.||+..+.....+.+.
T Consensus 579 ~~----d~dL~~iL~~v~L~~i~qr~~g~da~~dWkd~LsgGekQR~~mARm~yHrPkyalLDEcTsAvsidvE~~i~~~ 654 (728)
T KOG0064|consen 579 YT----DQDLEAILDIVHLEHILQREGGWDAVRDWKDVLSGGEKQRMGMARMFYHRPKYALLDECTSAVSIDVEGKIFQA 654 (728)
T ss_pred CC----HHHHHHHHHHhhHHHHHHhccChhhhccHHhhccchHHHHHHHHHHHhcCcchhhhhhhhcccccchHHHHHHH
Confidence 22 23455666666666554332221 12245999999999999999999999999999999988887777776
Q ss_pred HHHHHHcCCEEEEEecCChhHHHhhhceEEEe
Q 048028 154 LQRIAKSGSIVIMSIHQPSYRILSLLDRLIIL 185 (592)
Q Consensus 154 l~~la~~g~tvi~~~H~~~~~i~~~~D~v~ll 185 (592)
.++ .|.+.+-++|+|+ +..+-..++-.
T Consensus 655 ak~---~gi~llsithrps--lwk~h~~ll~~ 681 (728)
T KOG0064|consen 655 AKD---AGISLLSITHRPS--LWKYHTHLLEF 681 (728)
T ss_pred HHh---cCceEEEeecCcc--HHHHHHHHHhc
Confidence 654 4899999999997 45544444333
No 412
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=99.64 E-value=9.8e-17 Score=156.99 Aligned_cols=85 Identities=13% Similarity=0.156 Sum_probs=69.9
Q ss_pred CCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHH-HHHHHHHcCCEEEEEecCChhHHHhhhceEEEecCCeE
Q 048028 112 VSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVN-VLQRIAKSGSIVIMSIHQPSYRILSLLDRLIILSHGQS 190 (592)
Q Consensus 112 LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~-~l~~la~~g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~ 190 (592)
++++++ |+..+.+++.+|+++++||||+|+|+.....+.. .++.+.+.+.++|++||++ ++.+.+|++..++.|++
T Consensus 92 ~~~e~~-~l~~i~~~~~~~~llllDEp~~gld~~~~~~l~~~ll~~l~~~~~~vi~~tH~~--~~~~~~~~~~~l~~~~~ 168 (202)
T cd03243 92 FMAELL-ELKEILSLATPRSLVLIDELGRGTSTAEGLAIAYAVLEHLLEKGCRTLFATHFH--ELADLPEQVPGVKNLHM 168 (202)
T ss_pred HHHHHH-HHHHHHHhccCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEECChH--HHHHHhhcCCCeEEEEE
Confidence 555555 5777788899999999999999999998887765 5677777789999999996 46788999999999999
Q ss_pred eeecChhhH
Q 048028 191 VYNETPSNL 199 (592)
Q Consensus 191 v~~g~~~~~ 199 (592)
...++..++
T Consensus 169 ~~~~~~~~~ 177 (202)
T cd03243 169 EELITTGGL 177 (202)
T ss_pred EEEecCCee
Confidence 888765443
No 413
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=99.64 E-value=8.3e-16 Score=156.11 Aligned_cols=138 Identities=22% Similarity=0.216 Sum_probs=94.7
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCc----ccccceeEEEccCCCCCCCCCHHHHHHHHHHccCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLES----KLLKIISAYVMQDDLLFPMLTVEETLMFAAEFRLPR 76 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~----~~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~~~ 76 (592)
++|+||||||||||+++|+|.++++ +|+|.++|+++.. ......+++++|++ +.+.++|.++..
T Consensus 114 ~~i~g~~g~GKttl~~~l~~~~~~~--~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~-~~~r~~v~~~~~--------- 181 (270)
T TIGR02858 114 TLIISPPQCGKTTLLRDLARILSTG--ISQLGLRGKKVGIVDERSEIAGCVNGVPQHD-VGIRTDVLDGCP--------- 181 (270)
T ss_pred EEEEcCCCCCHHHHHHHHhCccCCC--CceEEECCEEeecchhHHHHHHHhccccccc-ccccccccccch---------
Confidence 4799999999999999999998854 5999999998752 23334457888865 334555554421
Q ss_pred CCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHH
Q 048028 77 SVTKTKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVNVLQR 156 (592)
Q Consensus 77 ~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~ 156 (592)
+. + | .....+..+|+++++|||++ ...+...++.
T Consensus 182 ---k~---~-----------------------------~-----~~~~i~~~~P~villDE~~~------~e~~~~l~~~ 215 (270)
T TIGR02858 182 ---KA---E-----------------------------G-----MMMLIRSMSPDVIVVDEIGR------EEDVEALLEA 215 (270)
T ss_pred ---HH---H-----------------------------H-----HHHHHHhCCCCEEEEeCCCc------HHHHHHHHHH
Confidence 00 0 0 12222335999999999974 2334445555
Q ss_pred HHHcCCEEEEEecCChhHHH------------hhhceEEEecCCeEeeecChhhH
Q 048028 157 IAKSGSIVIMSIHQPSYRIL------------SLLDRLIILSHGQSVYNETPSNL 199 (592)
Q Consensus 157 la~~g~tvi~~~H~~~~~i~------------~~~D~v~ll~~G~~v~~g~~~~~ 199 (592)
+ ++|.++|+++|+++.+-. .+|||+++|++|+ ..|.++++
T Consensus 216 ~-~~G~~vI~ttH~~~~~~~~~r~~~~~l~~~~~~~r~i~L~~~~--~~g~~~~i 267 (270)
T TIGR02858 216 L-HAGVSIIATAHGRDVEDLYKRPVFKELIENEAFERYVVLSRRK--GPGTVEAV 267 (270)
T ss_pred H-hCCCEEEEEechhHHHHHHhChHHHHHHhcCceEEEEEEecCC--CCCceeec
Confidence 4 469999999998753222 6689999999887 56666543
No 414
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=99.59 E-value=4.5e-15 Score=152.96 Aligned_cols=168 Identities=26% Similarity=0.379 Sum_probs=124.1
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCC------CCceeEEEECCEecCcccccceeEEEccCC-CCCCCCCHHHHHHHHHHcc
Q 048028 1 MAILGASGAGKTTLMDALAGRIEK------ESLQGAVTLNGEVLESKLLKIISAYVMQDD-LLFPMLTVEETLMFAAEFR 73 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~------~~~~G~I~i~g~~~~~~~~~~~~~yv~Q~~-~l~~~lTV~E~l~f~~~l~ 73 (592)
++|+|+|||||||||++|.|.... .+++|.|.+--.. ..+.+|.+. .-+..-|+.|++.-
T Consensus 412 vaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~nt--------~~a~iPge~Ep~f~~~tilehl~s----- 478 (593)
T COG2401 412 VAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNT--------VSALIPGEYEPEFGEVTILEHLRS----- 478 (593)
T ss_pred EEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceeccccc--------hhhccCcccccccCchhHHHHHhh-----
Confidence 479999999999999999998652 1345666542111 224455442 22345577776631
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHH
Q 048028 74 LPRSVTKTKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVNV 153 (592)
Q Consensus 74 ~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~ 153 (592)
.+ .+-....++|++.||.+-.- =....+.||-|||.|+.||.++...|.+++.||=-+.||..++..+.+-
T Consensus 479 ~t------GD~~~AveILnraGlsDAvl---yRr~f~ELStGQKeR~KLAkllaerpn~~~iDEF~AhLD~~TA~rVArk 549 (593)
T COG2401 479 KT------GDLNAAVEILNRAGLSDAVL---YRRKFSELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARK 549 (593)
T ss_pred cc------CchhHHHHHHHhhccchhhh---hhccHhhcCcchHHHHHHHHHHhcCCCcEEhhhhhhhcCHHHHHHHHHH
Confidence 11 11234678999999975321 1234567999999999999999999999999999999999999999999
Q ss_pred HHHHHHc-CCEEEEEecCChhHHHhh-hceEEEecCCeEe
Q 048028 154 LQRIAKS-GSIVIMSIHQPSYRILSL-LDRLIILSHGQSV 191 (592)
Q Consensus 154 l~~la~~-g~tvi~~~H~~~~~i~~~-~D~v~ll~~G~~v 191 (592)
+.+++++ |.|++++||.|+. +-.+ -|+++++.-|.+.
T Consensus 550 iselaRe~giTlivvThrpEv-~~AL~PD~li~vgYg~v~ 588 (593)
T COG2401 550 ISELAREAGITLIVVTHRPEV-GNALRPDTLILVGYGKVP 588 (593)
T ss_pred HHHHHHHhCCeEEEEecCHHH-HhccCCceeEEeeccccc
Confidence 9999975 9999999999973 5555 5898888766553
No 415
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.56 E-value=7.5e-16 Score=158.99 Aligned_cols=185 Identities=25% Similarity=0.312 Sum_probs=127.2
Q ss_pred EEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCc-----------ccccceeEEEccCC-----CCCCCCCHHHH
Q 048028 2 AILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLES-----------KLLKIISAYVMQDD-----LLFPMLTVEET 65 (592)
Q Consensus 2 aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~-----------~~~~~~~~yv~Q~~-----~l~~~lTV~E~ 65 (592)
+++||||-||||||+.|+.+.-.-+..=+|++..+.+-. ...+ +...+..++ .--...|+.|-
T Consensus 294 GLVGPNG~GKTTLLkHIa~RalaIPpnIDvLlCEQEvvad~t~Ai~tvl~aD~k-Rl~lLeee~~L~~q~e~Gd~taaEr 372 (807)
T KOG0066|consen 294 GLVGPNGMGKTTLLKHIAARALAIPPNIDVLLCEQEVVADSTSAIDTVLKADKK-RLALLEEEAKLMSQIEEGDTTAAER 372 (807)
T ss_pred cccCCCCCchHHHHHHHHhhhccCCCCCceEeeeeeeeecCcHHHHHHHHhhHH-HHHHHHHHHHHHHHHHcCchHHHHH
Confidence 689999999999999999884321212344554443210 0111 111111111 11234577776
Q ss_pred HHH-HHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCH
Q 048028 66 LMF-AAEFRLPRSVTKTKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDS 144 (592)
Q Consensus 66 l~f-~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~ 144 (592)
|.- ...+|. ......+.++..+|.-||.+.-.. +++....|||-|-||++||||-..|-+|+|||||+.||-
T Consensus 373 l~~v~~ELra---iGA~sAEarARRILAGLGFskEMQ----~rPt~kFSGGWRMRvSLARALflEPTLLMLDEPTNHLDL 445 (807)
T KOG0066|consen 373 LKEVADELRA---IGADSAEARARRILAGLGFSKEMQ----ERPTTKFSGGWRMRVSLARALFLEPTLLMLDEPTNHLDL 445 (807)
T ss_pred HHHHHHHHHH---hccccchhHHHHHHhhcCCChhHh----cCCccccCCceeeehhHHHHHhcCceeeeecCCcccccc
Confidence 643 234442 122334567788999999875443 334457999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHcCCEEEEEecCChhHHHhhhceEEEecCCeEee-ecChhh
Q 048028 145 TSAFMVVNVLQRIAKSGSIVIMSIHQPSYRILSLLDRLIILSHGQSVY-NETPSN 198 (592)
Q Consensus 145 ~~~~~i~~~l~~la~~g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~-~g~~~~ 198 (592)
....-+-+.|+.+. +|.++++||-. -+-..|..|+.|++-++.| .|.-.-
T Consensus 446 NAVIWLdNYLQgWk---KTLLIVSHDQg-FLD~VCtdIIHLD~qkLhyYrGNY~~ 496 (807)
T KOG0066|consen 446 NAVIWLDNYLQGWK---KTLLIVSHDQG-FLDSVCTDIIHLDNQKLHYYRGNYTL 496 (807)
T ss_pred ceeeehhhHHhhhh---heeEEEecccc-hHHHHHHHHhhhhhhhhhhhcchHHH
Confidence 88888888888775 59999999987 4788999999999888754 455443
No 416
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=99.52 E-value=5.6e-15 Score=142.60 Aligned_cols=80 Identities=15% Similarity=0.163 Sum_probs=57.6
Q ss_pred CCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHH-HHHHHHHHc-CCEEEEEecCChhHHHhhhceEEEecC
Q 048028 110 RGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVV-NVLQRIAKS-GSIVIMSIHQPSYRILSLLDRLIILSH 187 (592)
Q Consensus 110 ~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~-~~l~~la~~-g~tvi~~~H~~~~~i~~~~D~v~ll~~ 187 (592)
..+|+|++|...+.. .+.+|+++++|||++|+|+.....+. ..++.+.++ +.++|++||++ ++.+.+|+.--+.+
T Consensus 60 s~fs~~~~~l~~~l~-~~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~~~~~~iii~TH~~--~l~~~~~~~~~v~~ 136 (185)
T smart00534 60 STFMVEMKETANILK-NATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLEKIGALTLFATHYH--ELTKLADEHPGVRN 136 (185)
T ss_pred cHHHHHHHHHHHHHH-hCCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEecHH--HHHHHhhcCccceE
Confidence 348887776333332 23599999999999999999877765 567778774 88999999997 47788876444444
Q ss_pred CeEee
Q 048028 188 GQSVY 192 (592)
Q Consensus 188 G~~v~ 192 (592)
++...
T Consensus 137 ~~~~~ 141 (185)
T smart00534 137 LHMSA 141 (185)
T ss_pred EEEEE
Confidence 44433
No 417
>TIGR01247 drrB daunorubicin resistance ABC transporter membrane protein. This model describes daunorubicin resistance ABC transporter, membrane associated protein in bacteria and archaea. The protein associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=99.51 E-value=3.8e-12 Score=127.43 Aligned_cols=195 Identities=13% Similarity=0.058 Sum_probs=139.3
Q ss_pred HHHHHhhcChHHHHHHHHHHHHHHHHHHHHhcCC-CCC--hhhHH----HHHHHHHHHHHHHHHHHHHHHHH-HHhhhhH
Q 048028 294 RLLTNSRRMPELFGIRFGSVLVTGFILATLFWKL-QDS--PKGAL----KRLGFFAFAMTTIFYICAREIPA-LLQERDI 365 (592)
Q Consensus 294 R~~~~~~Rd~~~~~~r~~~~i~~~l~~G~~f~~~-~~~--~~~~~----~~~g~~f~~~~~~~~~~~~~i~~-~~~er~v 365 (592)
|+++...|||..+..-+++-+++.+++|.++-+. +.+ ..+.. --.|.+.+.+..... ...... .-.|+.+
T Consensus 1 re~~~~~r~~~~~~~~l~~Pl~~~~~~~~~~~~~~~~~~~~~g~~y~~fl~~G~~~~~~~~~~~--~~~~~~~~~~~~g~ 78 (236)
T TIGR01247 1 RELKRFIRSRSRIVGSILNPLLWLIFFGKGWSGAFRFPMIFGGVDYMTYLVPGIVAMTVFNMSF--FSGISVIWDRQFGF 78 (236)
T ss_pred CchHHHHHhhHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCcHHHHHHHHHHHHHHHHHHH--HhhhHHHHHHHhCH
Confidence 6778899999999999999999999999987543 111 11111 111222222211111 111111 1123233
Q ss_pred HHHHhcCCCCCchhHHHHHHHHHHhHHHHHHHHHHhhhhhccCCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhCcHH
Q 048028 366 FIRETSYNTYRHSSYVFAHSLVSMPPITTLSITFAVTTFWAVGLSGGFSGFLFFFITIFASFWAGSSFMAFIAGLVSHII 445 (592)
Q Consensus 366 ~~rE~~~~~Y~~~~y~la~~l~~lP~~~~~~~~f~~i~Y~~~gl~~~~~~f~~f~l~~~l~~~~~~~~~~~i~~~~~~~~ 445 (592)
+ ++....=.++..|+++|.+.+++..++..+++..+.+++.+++. ..++..++..++..++..++|.++++..++.+
T Consensus 79 ~-~~~~~~P~~~~~~~l~~~l~~~~~~~~~~~i~~~i~~~~~~~~~--~~~~~~~~~~~l~~~~~~~lg~~l~~~~~~~~ 155 (236)
T TIGR01247 79 L-KEILVAPASRVEMIVGRILGGSTVAMIQGAIILALSFIVAILKP--SGVIPTLVLAFIVGVALSGLGVAIAARMDSME 155 (236)
T ss_pred H-HHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--hhHHHHHHHHHHHHHHHHHHHHHHHHHhCCHH
Confidence 3 33222334678999999999999999999999999998877554 34555555555666677899999999999999
Q ss_pred HHHHHHHHHHHHHHHhhccccCCCCCCcchhhhhccCcchHHHHHHHH
Q 048028 446 IGFTIVVAILGYFLLFCGFYIPRDEIPPYWIWFHYVSLVKYPFQGVLQ 493 (592)
Q Consensus 446 ~a~~~~~~~~~~~~lf~Gf~i~~~~ip~~~~W~~yiSp~~y~~~~l~~ 493 (592)
.+..+.+.+..+++.+||.+.|.+.+|+|++|+.+++|++|+.|++-.
T Consensus 156 ~~~~i~~~~~~~l~~lsG~~~P~~~~P~~~~~i~~~~P~~~~~~~~r~ 203 (236)
T TIGR01247 156 GFQIIMSMLMLPMFFLSGAFYPITTMPAWMQGLAKINPLTYAVDGARY 203 (236)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCHHhCHHHHHHHHHHCcHHHHHHHHHH
Confidence 888888888889999999999999999999999999999999998653
No 418
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=99.51 E-value=4.9e-14 Score=145.77 Aligned_cols=160 Identities=25% Similarity=0.379 Sum_probs=121.4
Q ss_pred EEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCcccccceeEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHH
Q 048028 2 AILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLESKLLKIISAYVMQDDLLFPMLTVEETLMFAAEFRLPRSVTKT 81 (592)
Q Consensus 2 aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~ 81 (592)
..+|.||.|||||+++++|+++|+. .|+|-. -.++|=||.-.-=..-|||+.+.--. | +.-
T Consensus 371 vmlgEngtgkTTfi~mlag~~~pd~-~~e~p~-----------lnVSykpqkispK~~~tvR~ll~~kI--r-----~ay 431 (592)
T KOG0063|consen 371 VMLGENGTGKTTFIRMLAGRLKPDE-GGEIPV-----------LNVSYKPQKISPKREGTVRQLLHTKI--R-----DAY 431 (592)
T ss_pred EEEccCCcchhHHHHHHhcCCCCCc-cCcccc-----------cceeccccccCccccchHHHHHHHHh--H-----hhh
Confidence 5689999999999999999988653 233322 12566666644333458998775321 1 111
Q ss_pred HHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH-Hc
Q 048028 82 KKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVNVLQRIA-KS 160 (592)
Q Consensus 82 ~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~la-~~ 160 (592)
...+-+.++++-|.+++..|.- +.+|||||.|||++|.+|=..+++.+.|||.+-||++++...-+.+++.- +.
T Consensus 432 ~~pqF~~dvmkpL~ie~i~dqe-----vq~lSggelQRval~KOGGKpAdvYliDEpsAylDSeQRi~AskvikRfilha 506 (592)
T KOG0063|consen 432 MHPQFVNDVMKPLQIENIIDQE-----VQGLSGGELQRVALALCLGKPADVYLIDEPSAYLDSEQRIIASKVIKRFILHA 506 (592)
T ss_pred cCHHHHHhhhhhhhHHHHHhHH-----hhcCCchhhHHHHHHHhcCCCCceEEecCchhhcChHHHHHHHHHHHHHHHhc
Confidence 1235677888888888877654 45699999999999999999999999999999999999999999999965 45
Q ss_pred CCEEEEEecCChhHHHhhhceEEEec
Q 048028 161 GSIVIMSIHQPSYRILSLLDRLIILS 186 (592)
Q Consensus 161 g~tvi~~~H~~~~~i~~~~D~v~ll~ 186 (592)
++|-.++.|+.-. .--++|||++..
T Consensus 507 kktafvVEhdfIm-aTYladrvivf~ 531 (592)
T KOG0063|consen 507 KKTAFVVEHDFIM-ATYLADRVIVFE 531 (592)
T ss_pred cchhhhhhhHHHH-HHhhcceeEEEe
Confidence 7899999999753 334789998774
No 419
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.50 E-value=2.4e-14 Score=140.06 Aligned_cols=120 Identities=18% Similarity=0.257 Sum_probs=83.2
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCcccccceeEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCH
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLESKLLKIISAYVMQDDLLFPMLTVEETLMFAAEFRLPRSVTK 80 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~ 80 (592)
++|+||||+|||||++++++..- +.+.-.|| +...+.+++.|++...
T Consensus 32 ~~l~G~n~~GKstll~~i~~~~~-------------------la~~G~~v---pa~~~~l~~~d~I~~~----------- 78 (204)
T cd03282 32 HIITGPNMSGKSTYLKQIALLAI-------------------MAQIGCFV---PAEYATLPIFNRLLSR----------- 78 (204)
T ss_pred EEEECCCCCCHHHHHHHHHHHHH-------------------HHHcCCCc---chhhcCccChhheeEe-----------
Confidence 47999999999999999988731 11111233 2334555666666321
Q ss_pred HHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHH-HHHHHHHHH
Q 048028 81 TKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMV-VNVLQRIAK 159 (592)
Q Consensus 81 ~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i-~~~l~~la~ 159 (592)
++..+..+. ..+.+|+|++|+ ..+.+++.+|+++++|||++|+|+.....+ ...++.+.+
T Consensus 79 -------------~~~~d~~~~-----~~S~fs~e~~~~-~~il~~~~~~~lvllDE~~~gt~~~~~~~l~~~il~~l~~ 139 (204)
T cd03282 79 -------------LSNDDSMER-----NLSTFASEMSET-AYILDYADGDSLVLIDELGRGTSSADGFAISLAILECLIK 139 (204)
T ss_pred -------------cCCccccch-----hhhHHHHHHHHH-HHHHHhcCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHh
Confidence 222211111 223589898865 566778899999999999999999876655 457888888
Q ss_pred cCCEEEEEecCCh
Q 048028 160 SGSIVIMSIHQPS 172 (592)
Q Consensus 160 ~g~tvi~~~H~~~ 172 (592)
.|.++|++||+.+
T Consensus 140 ~~~~~i~~TH~~~ 152 (204)
T cd03282 140 KESTVFFATHFRD 152 (204)
T ss_pred cCCEEEEECChHH
Confidence 8999999999975
No 420
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=99.50 E-value=3.9e-14 Score=140.01 Aligned_cols=142 Identities=19% Similarity=0.189 Sum_probs=95.2
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCcccccceeEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCH
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLESKLLKIISAYVMQDDLLFPMLTVEETLMFAAEFRLPRSVTK 80 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~ 80 (592)
++|.||||+|||||||.+++..-. |. .|..+... +..++++.| +++.+++.|++..+
T Consensus 33 ~~l~Gpn~sGKstllr~i~~~~~l----~~---~g~~vp~~--~~~i~~~~~---i~~~~~~~~~ls~g----------- 89 (216)
T cd03284 33 LLITGPNMAGKSTYLRQVALIALL----AQ---IGSFVPAS--KAEIGVVDR---IFTRIGASDDLAGG----------- 89 (216)
T ss_pred EEEECCCCCChHHHHHHHHHHHHH----hc---cCCeeccc--cceecceee---EeccCCchhhhccC-----------
Confidence 479999999999999999875321 11 12222211 234566654 56778887776432
Q ss_pred HHHHHHHHHHHHHcCCcccccccccCCCCCCCCH--HHHHHHHHHHHHhhCCcEEEEeCC---CCCCCHHHHHHHHHHHH
Q 048028 81 TKKQERVEALINQLGLRSAAKTFIGDERHRGVSG--GERRRVSIGIHIIHDPILLFLDEP---TSGLDSTSAFMVVNVLQ 155 (592)
Q Consensus 81 ~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSg--GerqRv~ia~~L~~~p~lllLDEP---tsgLD~~~~~~i~~~l~ 155 (592)
.|. .|+++++-+...+.+|++++|||| |+++|.... ....++
T Consensus 90 -------------------------------~s~f~~e~~~l~~~l~~~~~~~llllDEp~~gt~~lD~~~~--~~~il~ 136 (216)
T cd03284 90 -------------------------------RSTFMVEMVETANILNNATERSLVLLDEIGRGTSTYDGLSI--AWAIVE 136 (216)
T ss_pred -------------------------------cchHHHHHHHHHHHHHhCCCCeEEEEecCCCCCChHHHHHH--HHHHHH
Confidence 111 133344444444679999999999 888887552 234555
Q ss_pred HHHHc-CCEEEEEecCChhHHHhhhceEEEecCCeEeeecChhhHH
Q 048028 156 RIAKS-GSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNETPSNLA 200 (592)
Q Consensus 156 ~la~~-g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~~~~~ 200 (592)
.+.+. +.++|++||+. ++.+++|++.-+.+|++...+..+++.
T Consensus 137 ~l~~~~~~~vi~~TH~~--~l~~l~~~~~~v~~~~~~~~~~~~~l~ 180 (216)
T cd03284 137 YLHEKIGAKTLFATHYH--ELTELEGKLPRVKNFHVAVKEKGGGVV 180 (216)
T ss_pred HHHhccCCcEEEEeCcH--HHHHHhhcCCCeEEEEEEEEeeCCeEE
Confidence 56665 88999999996 578899998888889888777666553
No 421
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=99.42 E-value=7.8e-13 Score=130.97 Aligned_cols=88 Identities=26% Similarity=0.481 Sum_probs=66.7
Q ss_pred HHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHh----hCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc
Q 048028 85 ERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHII----HDPILLFLDEPTSGLDSTSAFMVVNVLQRIAKS 160 (592)
Q Consensus 85 ~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~----~~p~lllLDEPtsgLD~~~~~~i~~~l~~la~~ 160 (592)
+.+.+.++..++... .+|||||.+++||.-|+ .+.++++||||.++||...+..+.++|+++.+
T Consensus 121 ~~~~~~l~~~~i~~~-----------~lSgGEk~~~~Lal~lA~~~~~~~p~~ilDEvd~~LD~~~~~~l~~~l~~~~~- 188 (220)
T PF02463_consen 121 KDLEELLPEVGISPE-----------FLSGGEKSLVALALLLALQRYKPSPFLILDEVDAALDEQNRKRLADLLKELSK- 188 (220)
T ss_dssp HHHHHHHHCTTTTTT-----------GS-HHHHHHHHHHHHHHHHTCS--SEEEEESTTTTS-HHHHHHHHHHHHHHTT-
T ss_pred ccccccccccccccc-----------ccccccccccccccccccccccccccccccccccccccccccccccccccccc-
Confidence 456667776666542 49999999999997664 47789999999999999999999999999875
Q ss_pred CCEEEEEecCChhHHHhhhceEEEec
Q 048028 161 GSIVIMSIHQPSYRILSLLDRLIILS 186 (592)
Q Consensus 161 g~tvi~~~H~~~~~i~~~~D~v~ll~ 186 (592)
+.-+|++||++. +++.+|+.+.+.
T Consensus 189 ~~Q~ii~Th~~~--~~~~a~~~~~v~ 212 (220)
T PF02463_consen 189 QSQFIITTHNPE--MFEDADKLIGVT 212 (220)
T ss_dssp TSEEEEE-S-HH--HHTT-SEEEEEE
T ss_pred cccccccccccc--cccccccccccc
Confidence 467999999974 789999887764
No 422
>TIGR00025 Mtu_efflux ABC transporter efflux protein, DrrB family. This model represents a branch of a larger superfamily that also includes NodJ, a part of the NodIJ pair of nodulation-triggering signal efflux proteins. The members of this branch may all act in antibiotic resistance.
Probab=99.41 E-value=8.1e-11 Score=117.65 Aligned_cols=187 Identities=12% Similarity=0.076 Sum_probs=121.7
Q ss_pred hcChHHHHHHHHHHHHHHHHHHHHhcCCCCChhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhh--hHHHHHhcCCCCC
Q 048028 300 RRMPELFGIRFGSVLVTGFILATLFWKLQDSPKGALK-RLGFFAFAMTTIFYICAREIPALLQER--DIFIRETSYNTYR 376 (592)
Q Consensus 300 ~Rd~~~~~~r~~~~i~~~l~~G~~f~~~~~~~~~~~~-~~g~~f~~~~~~~~~~~~~i~~~~~er--~v~~rE~~~~~Y~ 376 (592)
+|||.....-+.+.+++-++++.+|-+.. +.+..+. ..|.+-+.... +.....-.....|| ..+.|=+..- .+
T Consensus 2 ~r~p~~~~~~~~~p~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~--~~~~~~~~~i~~er~~G~l~rl~~~P-~~ 77 (232)
T TIGR00025 2 LRVGAQIILTMFIPITFMVGLNLLPGGSV-THNRGATFIPVLMALAAIS--TAFTGQAIAVARDRRYGALKRLGATP-LP 77 (232)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHhcCCcc-CCcchhHhhHHHHHHHHHH--HHHHHHHHHHHHHHHhCHHHHHhcCC-Cc
Confidence 69999998888988888788887776521 1112211 12222111111 11111111223333 3444444443 47
Q ss_pred chhHHHHHHHHHHhHHHHHHHHHHhhhhhccCCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhC---cHHHHHHHHHH
Q 048028 377 HSSYVFAHSLVSMPPITTLSITFAVTTFWAVGLSGGFSGFLFFFITIFASFWAGSSFMAFIAGLVS---HIIIGFTIVVA 453 (592)
Q Consensus 377 ~~~y~la~~l~~lP~~~~~~~~f~~i~Y~~~gl~~~~~~f~~f~l~~~l~~~~~~~~~~~i~~~~~---~~~~a~~~~~~ 453 (592)
+..|+++|++..++..++...++. +++++.|++.....+ .+++...+....+.+++.+++.+.+ +.+.+..+...
T Consensus 78 ~~~~l~g~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~~ 155 (232)
T TIGR00025 78 RLGILAGRSLAVVARVFLQTLILL-VIGFVLGFRFAGGAL-TALTLGAVIIALGTALFAALGLVAGGTLQAEIVLAVANL 155 (232)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhccCcCCchH-HHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence 899999999988888777655554 556677887654333 3333344444555667777777764 44555777778
Q ss_pred HHHHHHHhhccccCCCCCCcchhhhhccCcchHHHHHHH
Q 048028 454 ILGYFLLFCGFYIPRDEIPPYWIWFHYVSLVKYPFQGVL 492 (592)
Q Consensus 454 ~~~~~~lf~Gf~i~~~~ip~~~~W~~yiSp~~y~~~~l~ 492 (592)
+..+++++||.+.|.+.+|.|++|+.+++|++|+.+++-
T Consensus 156 ~~~p~~~lSG~~~P~~~mP~~lq~i~~~~P~t~~~~~~r 194 (232)
T TIGR00025 156 VWFIFALLSAGLVPLNLIPTWIKWFVRVQPSSYATEALR 194 (232)
T ss_pred HHHHHHHHhheeeecccccHHHHHHHHhCcHHHHHHHHH
Confidence 888899999999999999999999999999999999865
No 423
>TIGR03062 pip_yhgE_Cterm YhgE/Pip C-terminal domain. This family contains the C-terminal domain of a family of multiple membrane-spanning proteins of Gram-positive bacteria. One member was shown to be a host protein essential for phage infection, so many members of this family are called "phage infection protein". A separate model, TIGR03061, represents the conserved N-terminal domain. The domains are separated by regions highly variable in both length and sequence, often containing extended heptad repeats as described in model TIGR03057.
Probab=99.41 E-value=8.9e-12 Score=122.31 Aligned_cols=148 Identities=16% Similarity=0.110 Sum_probs=119.2
Q ss_pred CchhHHHHHHHHHHhHHHHHHHHHHhhhhhccCCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHHHHH
Q 048028 376 RHSSYVFAHSLVSMPPITTLSITFAVTTFWAVGLSGGFSGFLFFFITIFASFWAGSSFMAFIAGLVSHIIIGFTIVVAIL 455 (592)
Q Consensus 376 ~~~~y~la~~l~~lP~~~~~~~~f~~i~Y~~~gl~~~~~~f~~f~l~~~l~~~~~~~~~~~i~~~~~~~~~a~~~~~~~~ 455 (592)
+.+.++++|++..++..+++.+++..+.|++.|++.. +++.+++.+++..++..+++.++++..++...+ .....+
T Consensus 58 ~~~~~~~~k~~~~~~~~~~~~~~~~~i~~~~~g~~~~--~~~~~~l~~~l~~~~~~~lg~~l~~~~~~~~~~--~~~~~~ 133 (208)
T TIGR03062 58 RSWRIALAKLLPGGLIGVLQAIILYGVLILGLGLDPA--HPPATFGFAILTSLTFMAIIQFLVALFGNVGRF--LALVLL 133 (208)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccC--CHHHHHHHHHHHHHHHHHHHHHHHHHhCcchHH--HHHHHH
Confidence 4567799999999999999999999999999999864 466677777777888889999999999876543 333445
Q ss_pred HHHHHhhccccCCCCCCcchhhhhccCcchHHHHHHHHHHhCCCCccccCCccccCCCCCCCCCchhhHHHHhhhccccC
Q 048028 456 GYFLLFCGFYIPRDEIPPYWIWFHYVSLVKYPFQGVLQNEFGDPSKCFVSGVQVFDDTPFEGLPFDTKIKLLENMSNVLG 535 (592)
Q Consensus 456 ~~~~lf~Gf~i~~~~ip~~~~W~~yiSp~~y~~~~l~~nef~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 535 (592)
.+.++++|.+.|.+.+|+|++|+.|++|++|+.+++-...+++.
T Consensus 134 ~~~~~~sG~~~P~~~~P~~~~~i~~~~P~t~~~~~~r~~~~~~~------------------------------------ 177 (208)
T TIGR03062 134 VLQLGSSGGTFPIELLPAFFQAIHPFLPMTYSVNGLRQLISGGN------------------------------------ 177 (208)
T ss_pred HHHHccCCCccchhhCHHHHHHhhhhCcHHHHHHHHHHHHhCCc------------------------------------
Confidence 56667899899999999999999999999999999875544321
Q ss_pred CCccCcccccchHHHHhhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHh
Q 048028 536 NNITSSTCVTTGMKLLEQKGVTDISKWKCFWITVAFGFLFRVLFYFTLLF 585 (592)
Q Consensus 536 ~~~~~~~C~~~G~~~L~~~g~~~~~~w~~~~il~~~~~~~~~l~~~~L~~ 585 (592)
..+.|.++++++++.+++.++++...|.
T Consensus 178 ----------------------~~~~~~~~~~L~~~~~v~~~la~~~~~~ 205 (208)
T TIGR03062 178 ----------------------DGTLWQAVAVLLLILVVFLALSLLSARR 205 (208)
T ss_pred ----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 1235778899999999888888877654
No 424
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.39 E-value=1.4e-12 Score=128.57 Aligned_cols=58 Identities=22% Similarity=0.315 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHH-HHHHHHHHHcC---CEEEEEecCCh
Q 048028 115 GERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMV-VNVLQRIAKSG---SIVIMSIHQPS 172 (592)
Q Consensus 115 GerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i-~~~l~~la~~g---~tvi~~~H~~~ 172 (592)
-|-||++++++++.+|+++++|||++|+|+.....+ ...++++.++| .++|++||+++
T Consensus 94 ~el~~l~~~l~~~~~~slvllDE~~~gtd~~~~~~~~~ail~~l~~~~~~~~~vli~TH~~~ 155 (213)
T cd03281 94 IDLYQVSKALRLATRRSLVLIDEFGKGTDTEDGAGLLIATIEHLLKRGPECPRVIVSTHFHE 155 (213)
T ss_pred HHHHHHHHHHHhCCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEcChHH
Confidence 377999999999999999999999999999765444 56888887652 48999999986
No 425
>TIGR01291 nodJ ABC-2 type transporter, NodJ family. Nearly all members of this subfamily are NodJ which, together with NodI (TIGR01288), acts to export a variety of modified carbohydrate molecules as signals to plant hosts to establish root nodules. The seed alignment includes a highly divergent member from Azorhizobium caulinodans that is, nonetheless, associated with nodulation. This model is designated as subfamily in part because not all sequences derived from the last common ancestral sequence of Rhizobium sp. and Azorhizobium caulinodans NodJ are necessarily nodulation proteins.
Probab=99.38 E-value=2.2e-10 Score=116.12 Aligned_cols=200 Identities=11% Similarity=0.014 Sum_probs=134.6
Q ss_pred HHHHHHHHHHHhhcC-hHHHHHHHHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHHHHHHHH----HH-HHHH-HHHH
Q 048028 288 TIVISKRLLTNSRRM-PELFGIRFGSVLVTGFILATLFWKLQDSPKGALKRLGFFAFAMTTIFY----IC-AREI-PALL 360 (592)
Q Consensus 288 ~~~l~~R~~~~~~Rd-~~~~~~r~~~~i~~~l~~G~~f~~~~~~~~~~~~~~g~~f~~~~~~~~----~~-~~~i-~~~~ 360 (592)
...+.+|+++..+|+ |......+++-++.-+++|..+-....+..+ .+... |+......+ .+ .... ..+.
T Consensus 7 ~~~~~~R~~~~~~r~~~~~~~~~~~~P~~~l~~fg~~~~~~~~~~~g-~~y~~--f~~pg~l~~~~~~~~~~~~~~~~~~ 83 (253)
T TIGR01291 7 WAAVWRRNALAWKKVAAASVLGNLADPLIYLFGLGVGLGKMVGSVDG-VSYAA--FLAAGMVATSAMTASTFETIYATFA 83 (253)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhccccCC-CCHHH--HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345669999999999 9999999999998888888887543221111 11111 221111111 11 1111 1122
Q ss_pred h--hhhHHHHHhcCCCCCchhHHHHHHHHHHhHHHHHHHHHHhhhhhccCCcCchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 048028 361 Q--ERDIFIRETSYNTYRHSSYVFAHSLVSMPPITTLSITFAVTTFWAVGLSGGFSGFLFFFITIFASFWAGSSFMAFIA 438 (592)
Q Consensus 361 ~--er~v~~rE~~~~~Y~~~~y~la~~l~~lP~~~~~~~~f~~i~Y~~~gl~~~~~~f~~f~l~~~l~~~~~~~~~~~i~ 438 (592)
. |+..+.|-+..- -++..+.++|++.+.-..++..++...+.++ .|..+. ...+..+..+++..++..++|.+++
T Consensus 84 ~~r~~g~~~~l~~~P-v~~~~~~~g~~~~~~~~~~~~~~ii~~~~~~-~g~~~~-~~~l~~~~~~ll~~l~~~~lg~~~a 160 (253)
T TIGR01291 84 RMRVTRTWEAMLYTP-ITVGDIVLGEVAWAATKASLAGTIIGVVTAT-LGYIEW-WSLIYILPVIALTGLAFASLSMLVA 160 (253)
T ss_pred HHHHcccHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hhhchh-hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 222333333222 2678899999999977777776665555543 344333 3344444445556666778999999
Q ss_pred HhhCcHHHHHHHHHHHHHHHHHhhccccCCCCCCcchhhhhccCcchHHHHHHHH
Q 048028 439 GLVSHIIIGFTIVVAILGYFLLFCGFYIPRDEIPPYWIWFHYVSLVKYPFQGVLQ 493 (592)
Q Consensus 439 ~~~~~~~~a~~~~~~~~~~~~lf~Gf~i~~~~ip~~~~W~~yiSp~~y~~~~l~~ 493 (592)
.+.++.+.+..+...+..+++.+||.+.|.+.+|.|++|+.+++|+.|+.|++-.
T Consensus 161 ~~~~~~~~~~~i~~~i~~pl~flSg~~~P~~~mP~~lq~i~~~nPlt~~v~~~R~ 215 (253)
T TIGR01291 161 ALAPSYAYFAFYQSLVITPMLFLSGVVFPVFQLNDVIQGMTHFLPLAHSIDDIRP 215 (253)
T ss_pred HHhccHHHHHHHHHHHHHHHHHHHHHhcCHHhChHHHHHHHHHCcHHHHHHHHHH
Confidence 9999999888888888999999999999999999999999999999999998653
No 426
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.35 E-value=1.2e-12 Score=129.28 Aligned_cols=45 Identities=22% Similarity=0.284 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHhhCCcEEEEeCCC-----CCCCHHHHHHHHHHHHHHHH
Q 048028 115 GERRRVSIGIHIIHDPILLFLDEPT-----SGLDSTSAFMVVNVLQRIAK 159 (592)
Q Consensus 115 GerqRv~ia~~L~~~p~lllLDEPt-----sgLD~~~~~~i~~~l~~la~ 159 (592)
-|++++.||++++.+|+++++|||| +|||+..++.+.+.++++++
T Consensus 156 v~~~f~~ia~~l~~~p~~~~ldEp~~~~~~~~ld~~~~~~~~~~~~~~~~ 205 (215)
T PTZ00132 156 FEKPFLWLARRLTNDPNLVFVGAPALAPEEIQIDPELVAQAEKELQAAAN 205 (215)
T ss_pred HHHHHHHHHHHHhhcccceecCCcccCCCccccCHHHHHHHHHHHHHHhh
Confidence 3999999999999999999999999 99999999999999999975
No 427
>TIGR03861 phenyl_ABC_PedC alcohol ABC transporter, permease protein. Members of this protein family, part of a larger class of efflux-type ABC transport permease proteins, are found exclusively in genomic contexts with pyrroloquinoline-quinone (PQQ) biosynthesis enzymes and/or PQQ-dependent alcohol dehydrogenases, such as the phenylethanol dehydrogenase PedE of Pseudomonas putida U. Members include PedC, an apparent phenylethanol transport protein whose suggested role is efflux to limit intracellular concentrations of toxic metabolites during phenylethanol catalysis.
Probab=99.34 E-value=7.9e-10 Score=111.96 Aligned_cols=204 Identities=10% Similarity=-0.004 Sum_probs=138.3
Q ss_pred HHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHhcCC-CC------Ch-hhH--HHHHHHHHHHHHHHHHHHHH
Q 048028 285 WIETIVISKRLLTNSRRMPELFGIRFGSVLVTGFILATLFWKL-QD------SP-KGA--LKRLGFFAFAMTTIFYICAR 354 (592)
Q Consensus 285 ~~q~~~l~~R~~~~~~Rd~~~~~~r~~~~i~~~l~~G~~f~~~-~~------~~-~~~--~~~~g~~f~~~~~~~~~~~~ 354 (592)
+++++.+++|+++...|||..+..-+++-+++-+++|.+|-.. +. +. .+. .--.|.+-+.+....+. .
T Consensus 1 ~~~~~~l~~rel~~~~r~~~~~~~~ll~Pl~~l~~f~~~f~~~~~~~~~~~~~~~~~y~~fl~pGi~~~~~~~~~~~--~ 78 (253)
T TIGR03861 1 LICFNGIVLREALRFVQQRSRFLSALVRPLLWLLVFAAGFRAALGISIIEPYDTYITYEVYIVPGLCCMILLFNGMQ--S 78 (253)
T ss_pred ChHHHHHHHHHHHHHHHhhHHHHHHHHhHHHHHHHHHHHHHhhccccccccCCCCCCHHHHHHHHHHHHHHHHHHHH--h
Confidence 3678999999999999999999999999999999999988542 11 10 011 11112222212111111 1
Q ss_pred HHH-HHHhhhhHHHHHhcCCCCCchhHHHHHHHHHHhHHHHHHHHHHhhhhhccCCcCchhHHHHHHHHHHHHHHHHHHH
Q 048028 355 EIP-ALLQERDIFIRETSYNTYRHSSYVFAHSLVSMPPITTLSITFAVTTFWAVGLSGGFSGFLFFFITIFASFWAGSSF 433 (592)
Q Consensus 355 ~i~-~~~~er~v~~rE~~~~~Y~~~~y~la~~l~~lP~~~~~~~~f~~i~Y~~~gl~~~~~~f~~f~l~~~l~~~~~~~~ 433 (592)
... ..-.|+..+.+=+... .+...+.+++++.+.-..++..+++.++.+. .|.+.....++.....+++..+...++
T Consensus 79 ~~~~~~~r~~g~~~~l~~~p-~~~~~~~l~~~l~~~~~~~~~~~i~~~~~~~-~g~~~~~~~~l~~~~~~~l~~~~~~~l 156 (253)
T TIGR03861 79 SLSMVYDREMGSMRVLLTSP-LPRPFLLFCKLLASALISLLQVYAFLAIAAL-VGVQPPVWGYVSVLPALVLVAFMLGAL 156 (253)
T ss_pred hhHhHHhHhcCHHHHHhhCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCCCchhHHHHHHHHHHHHHHHHHH
Confidence 111 1122222333333333 4778899999999988777776665555443 366554444444444445556667789
Q ss_pred HHHHHHhhCcHHHHHHHHHHHHHHHHHhhccccCCCCC---CcchhhhhccCcchHHHHHHH
Q 048028 434 MAFIAGLVSHIIIGFTIVVAILGYFLLFCGFYIPRDEI---PPYWIWFHYVSLVKYPFQGVL 492 (592)
Q Consensus 434 ~~~i~~~~~~~~~a~~~~~~~~~~~~lf~Gf~i~~~~i---p~~~~W~~yiSp~~y~~~~l~ 492 (592)
|.+++.++++.+.+..+.+.++.+++..||.+.|.+.+ |+|++|+.++||+.|..|++=
T Consensus 157 gl~la~l~~~~~~~~~i~~~~~~~l~flSgi~~p~~~~~~~p~~l~~i~~~nPl~~~i~~~R 218 (253)
T TIGR03861 157 GLALSNLIRQLENFAGVMNFVIFPMFFLSSALYPLWKMQEASTWLYWICALNPFTHAVELVR 218 (253)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHHHhhHhhhhhhcccccHHHHHHHHhCcHHHHHHHHH
Confidence 99999999998888888888888899999999998766 889999999999999998765
No 428
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=99.31 E-value=4.8e-12 Score=131.23 Aligned_cols=98 Identities=22% Similarity=0.318 Sum_probs=85.8
Q ss_pred HHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCE
Q 048028 84 QERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVNVLQRIAKSGSI 163 (592)
Q Consensus 84 ~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~la~~g~t 163 (592)
++..+++++.+.|.+..++-+. .|||||-||.+||++-+.+.++.++|||.+-||...+..-...++.+....+=
T Consensus 191 r~~~~~~~~~~~L~~~~~re~~-----~lsggelqrfaia~~~vq~advyMFDEpSsYLDVKQRLkaA~~IRsl~~p~~Y 265 (592)
T KOG0063|consen 191 RDNKEEVCDQLDLNNLLDREVE-----QLSGGELQRFAIAMVCVQKADVYMFDEPSSYLDVKQRLKAAITIRSLINPDRY 265 (592)
T ss_pred cccHHHHHHHHHHhhHHHhhhh-----hcccchhhhhhhhhhhhhhcceeEecCCcccchHHHhhhHHHHHHHhhCCCCe
Confidence 3466788888888887766554 59999999999999999999999999999999999999999999999988888
Q ss_pred EEEEecCChhHHHhhhceEEEecC
Q 048028 164 VIMSIHQPSYRILSLLDRLIILSH 187 (592)
Q Consensus 164 vi~~~H~~~~~i~~~~D~v~ll~~ 187 (592)
||++.||.+- +--+.|-++.|..
T Consensus 266 iIVVEHDLsV-LDylSDFiCcLYG 288 (592)
T KOG0063|consen 266 IIVVEHDLSV-LDYLSDFICCLYG 288 (592)
T ss_pred EEEEEeechH-HHhhhcceeEEec
Confidence 9999999973 5556888888864
No 429
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=99.31 E-value=4e-12 Score=142.93 Aligned_cols=77 Identities=21% Similarity=0.349 Sum_probs=70.3
Q ss_pred CCCCHHHHHHHHHHHHHhhC----CcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCChhHHHhhhceEEEe
Q 048028 110 RGVSGGERRRVSIGIHIIHD----PILLFLDEPTSGLDSTSAFMVVNVLQRIAKSGSIVIMSIHQPSYRILSLLDRLIIL 185 (592)
Q Consensus 110 ~~LSgGerqRv~ia~~L~~~----p~lllLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~H~~~~~i~~~~D~v~ll 185 (592)
+.+||||+||++||++++.. |+++++||||+|||+.++..+.+.|+++++ +++||++||+|. +...+|++++|
T Consensus 439 ~~lSgGe~~rv~la~~l~~~~~~~~~~lilDEp~~gld~~~~~~~~~~l~~l~~-~~~vi~iTH~~~--~~~~ad~~~~l 515 (563)
T TIGR00634 439 KVASGGELSRVMLALKVVLSSSAAVTTLIFDEVDVGVSGETAQAIAKKLAQLSE-RHQVLCVTHLPQ--VAAHADAHFKV 515 (563)
T ss_pred hhcCHhHHHHHHHHHHHhhCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEEChHH--HHHhcCeEEEE
Confidence 46899999999999999985 699999999999999999999999999975 899999999986 45689999999
Q ss_pred cCCe
Q 048028 186 SHGQ 189 (592)
Q Consensus 186 ~~G~ 189 (592)
++|.
T Consensus 516 ~k~~ 519 (563)
T TIGR00634 516 EKEG 519 (563)
T ss_pred EEcc
Confidence 8764
No 430
>PRK10869 recombination and repair protein; Provisional
Probab=99.28 E-value=9.8e-12 Score=138.88 Aligned_cols=76 Identities=24% Similarity=0.428 Sum_probs=69.6
Q ss_pred CCCCHHHHHHHHHHHHHhh----CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCChhHHHhhhceEEEe
Q 048028 110 RGVSGGERRRVSIGIHIIH----DPILLFLDEPTSGLDSTSAFMVVNVLQRIAKSGSIVIMSIHQPSYRILSLLDRLIIL 185 (592)
Q Consensus 110 ~~LSgGerqRv~ia~~L~~----~p~lllLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~H~~~~~i~~~~D~v~ll 185 (592)
+.+||||+||++||++++. +|+++++|||++|||..++..+.+.|+++++ +.+|||+||+|. +...+|+.+.+
T Consensus 429 k~lSgGe~~Ri~LA~~~~~~~~~~~~~li~DEpd~gld~~~~~~v~~~l~~l~~-~~qvi~iTH~~~--~~~~ad~~~~v 505 (553)
T PRK10869 429 KVASGGELSRIALAIQVITARKMETPALIFDEVDVGISGPTAAVVGKLLRQLGE-STQVMCVTHLPQ--VAGCGHQHFFV 505 (553)
T ss_pred hhCCHHHHHHHHHHHHHHhccCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEecCHH--HHHhCCEEEEE
Confidence 4589999999999999997 5899999999999999999999999999975 689999999996 56899999999
Q ss_pred cCC
Q 048028 186 SHG 188 (592)
Q Consensus 186 ~~G 188 (592)
.++
T Consensus 506 ~k~ 508 (553)
T PRK10869 506 SKE 508 (553)
T ss_pred ecc
Confidence 875
No 431
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=99.26 E-value=5.6e-12 Score=145.32 Aligned_cols=63 Identities=19% Similarity=0.301 Sum_probs=56.3
Q ss_pred CCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHH-HHHHHHHHHcCCEEEEEecCChh
Q 048028 110 RGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMV-VNVLQRIAKSGSIVIMSIHQPSY 173 (592)
Q Consensus 110 ~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i-~~~l~~la~~g~tvi~~~H~~~~ 173 (592)
..+|+|+++++.|++.+ .+|+++|+|||++|+|+.....+ ..+++.+.+.|.++|++||+.+.
T Consensus 384 StfS~~m~~~~~il~~~-~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~~~g~~viitTH~~eL 447 (771)
T TIGR01069 384 STFSGHMKNISAILSKT-TENSLVLFDELGAGTDPDEGSALAISILEYLLKQNAQVLITTHYKEL 447 (771)
T ss_pred hHHHHHHHHHHHHHHhc-CCCcEEEecCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEECChHHH
Confidence 35999999999998876 78999999999999999999988 57888888889999999999763
No 432
>PHA02562 46 endonuclease subunit; Provisional
Probab=99.26 E-value=1e-11 Score=140.06 Aligned_cols=79 Identities=23% Similarity=0.351 Sum_probs=70.0
Q ss_pred CCCCCCHHHHHHHHHHHHHh----------hCCcEEEEeCCC-CCCCHHHHHHHHHHHHHHHHcCCEEEEEecCChhHHH
Q 048028 108 RHRGVSGGERRRVSIGIHII----------HDPILLFLDEPT-SGLDSTSAFMVVNVLQRIAKSGSIVIMSIHQPSYRIL 176 (592)
Q Consensus 108 ~~~~LSgGerqRv~ia~~L~----------~~p~lllLDEPt-sgLD~~~~~~i~~~l~~la~~g~tvi~~~H~~~~~i~ 176 (592)
.+..||||||||++||++|+ .+|++++||||| ++||+.....+.+.|+++ +|.+||+++|++. ..
T Consensus 465 ~~~~lS~Ge~~r~~la~~l~~~~~~~~~~~~~~~~lilDEp~~~~ld~~~~~~~~~~l~~~--~~~~iiiish~~~--~~ 540 (562)
T PHA02562 465 SYASFSQGEKARIDLALLFTWRDVASKVSGVDTNLLILDEVFDGALDAEGTKALLSILDSL--KDTNVFVISHKDH--DP 540 (562)
T ss_pred ChhhcChhHHHHHHHHHHHHHHHHHHHhcCCCcCeEEEecccCcccchhHHHHHHHHHHhC--CCCeEEEEECchh--ch
Confidence 34679999999999999887 599999999998 789999999999999998 5889999999975 56
Q ss_pred hhhceEEEecC-CeE
Q 048028 177 SLLDRLIILSH-GQS 190 (592)
Q Consensus 177 ~~~D~v~ll~~-G~~ 190 (592)
..+|++++|.+ |+.
T Consensus 541 ~~~d~~~~l~~~~~~ 555 (562)
T PHA02562 541 QKFDRHLKMEKVGRF 555 (562)
T ss_pred hhhhcEEEEEEECCe
Confidence 78999999986 554
No 433
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.25 E-value=1.6e-11 Score=147.50 Aligned_cols=81 Identities=21% Similarity=0.268 Sum_probs=74.5
Q ss_pred CCCCCCCHHHHHHHHHHHHHhh----------CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCChhHHH
Q 048028 107 ERHRGVSGGERRRVSIGIHIIH----------DPILLFLDEPTSGLDSTSAFMVVNVLQRIAKSGSIVIMSIHQPSYRIL 176 (592)
Q Consensus 107 ~~~~~LSgGerqRv~ia~~L~~----------~p~lllLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~H~~~~~i~ 176 (592)
..++.|||||++||+||++|+. +|++||+||||+|||+.+...+++.|+++.+.|++|++++|++. ...
T Consensus 946 r~~~~lSgGe~~~~~la~al~ls~~~~~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~l~~~g~~i~iisH~~~-~~~ 1024 (1042)
T TIGR00618 946 RPSATLSGGETFLASLSLALALADLLSTSGGTVLDSLFIDEGFGSLDEDSLDRAIGILDAIREGSKMIGIISHVPE-FRE 1024 (1042)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEecCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHH-HHH
Confidence 4567899999999999999985 79999999999999999999999999999888999999999997 578
Q ss_pred hhhceEEEecCC
Q 048028 177 SLLDRLIILSHG 188 (592)
Q Consensus 177 ~~~D~v~ll~~G 188 (592)
.++|+|.+++.|
T Consensus 1025 ~~~~~i~v~~~~ 1036 (1042)
T TIGR00618 1025 RIPHRILVKKTN 1036 (1042)
T ss_pred hhCCEEEEEECC
Confidence 899999999753
No 434
>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A.
Probab=99.22 E-value=3.5e-11 Score=119.45 Aligned_cols=64 Identities=25% Similarity=0.437 Sum_probs=54.5
Q ss_pred CCCCCHHHHHHHHHHHHHhhCC---cEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCh
Q 048028 109 HRGVSGGERRRVSIGIHIIHDP---ILLFLDEPTSGLDSTSAFMVVNVLQRIAKSGSIVIMSIHQPS 172 (592)
Q Consensus 109 ~~~LSgGerqRv~ia~~L~~~p---~lllLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~H~~~ 172 (592)
...+|.|+||.+.++..+...+ .++++|||-++|+|..+..+++.|+++++.+.-+|+|||.|.
T Consensus 234 ~~~~S~G~~~~l~l~~~l~~~~~~~~illiDEpE~~LHp~~q~~l~~~l~~~~~~~~QviitTHSp~ 300 (303)
T PF13304_consen 234 LSSLSSGEKRLLSLLSLLLSAKKNGSILLIDEPENHLHPSWQRKLIELLKELSKKNIQVIITTHSPF 300 (303)
T ss_dssp GS---HHHHHHHHHHHHHHTTTTT-SEEEEESSSTTSSHHHHHHHHHHHHHTGGGSSEEEEEES-GG
T ss_pred eccCCHHHHHHHHHHHHHhCcCCCCeEEEecCCcCCCCHHHHHHHHHHHHhhCccCCEEEEeCccch
Confidence 3457999999999999988776 899999999999999999999999988776788999999985
No 435
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=99.21 E-value=1.3e-10 Score=129.29 Aligned_cols=138 Identities=23% Similarity=0.392 Sum_probs=103.6
Q ss_pred CCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHH------HcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCC
Q 048028 57 FPMLTVEETLMFAAEFRLPRSVTKTKKQERVEALIN------QLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDP 130 (592)
Q Consensus 57 ~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~------~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p 130 (592)
+..|++.|.+.|...+.+.. ..+.-.+..+.++.+ .+||.-.- -++....|||||.||+-+|..+=++=
T Consensus 426 ~~~msi~~~~~f~~~l~l~~-~~~~ia~~ilkei~~RL~fL~~VGL~YLt----L~R~a~TLSGGEaQRIRLAtqiGS~L 500 (935)
T COG0178 426 ISEMSIADALEFFENLKLSE-KEKKIAEPILKEIKERLGFLVDVGLGYLT----LSRSAGTLSGGEAQRIRLATQIGSGL 500 (935)
T ss_pred HhhccHHHHHHHHHhCCCch-hhHHHHHHHHHHHHHHHHHHHHcCcCccc----ccccCCCcChhHHHHHHHHHHhcccc
Confidence 45678899888877665321 111111222233333 34665321 13445679999999999999997753
Q ss_pred --cEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCChhHHHhhhceEEEe------cCCeEeeecChhhHHH
Q 048028 131 --ILLFLDEPTSGLDSTSAFMVVNVLQRIAKSGSIVIMSIHQPSYRILSLLDRLIIL------SHGQSVYNETPSNLAQ 201 (592)
Q Consensus 131 --~lllLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~H~~~~~i~~~~D~v~ll------~~G~~v~~g~~~~~~~ 201 (592)
=+++||||+.||-+..-.++++.|++|++.|-|+|++.||++ +...+|+|+=| ..|++++.|+++++.+
T Consensus 501 tGVlYVLDEPSIGLHqrDn~rLi~tL~~LRDlGNTviVVEHDed--ti~~AD~iIDiGPgAG~~GGeIv~~Gtp~~i~~ 577 (935)
T COG0178 501 TGVLYVLDEPSIGLHQRDNERLIETLKRLRDLGNTVIVVEHDED--TIRAADHIIDIGPGAGEHGGEIVAEGTPEELLA 577 (935)
T ss_pred eeeEEEecCCccCCChhhHHHHHHHHHHHHhcCCeEEEEecCHH--HHhhcCEEEeeCCCCCcCCCEEEEccCHHHHHh
Confidence 367999999999999999999999999999999999999974 78899999998 3579999999999864
No 436
>PRK15066 inner membrane transport permease; Provisional
Probab=99.18 E-value=2.5e-08 Score=101.36 Aligned_cols=205 Identities=11% Similarity=0.078 Sum_probs=124.5
Q ss_pred HHHHHHHHHHHHHHHhhcChHH-HHHHHHHHHHHHHHHHHHhcCC-CC-ChhhHHH--HHHHHHHHHHHHHHHHHHHHHH
Q 048028 284 FWIETIVISKRLLTNSRRMPEL-FGIRFGSVLVTGFILATLFWKL-QD-SPKGALK--RLGFFAFAMTTIFYICAREIPA 358 (592)
Q Consensus 284 ~~~q~~~l~~R~~~~~~Rd~~~-~~~r~~~~i~~~l~~G~~f~~~-~~-~~~~~~~--~~g~~f~~~~~~~~~~~~~i~~ 358 (592)
+|+-++.+.+|+.+...||+.. ...-+++.++..+++|.++-.. +. +..+... -.|.+-+..... +.......
T Consensus 6 ~~~~~~~l~~re~~~~~r~~~~~ll~pli~~~~~~~vfg~~~~~~~~~~~~~~y~~fl~pGll~~~~~~~--~~~~~~~~ 83 (257)
T PRK15066 6 YWIALKTIVRKEIRRFLRIWVQTLVPPVITMTLYFLIFGNLIGSRIGEMGGFSYMQFIVPGLIMMSVITN--SYSNVASS 83 (257)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhccccCCCCCCcHHHHHHHHHHHHHHHHH--HHHHHHHH
Confidence 3677889999999999999854 3444555566677777665321 11 0001111 112221111111 11111122
Q ss_pred HHhhhhH-HHHHhcCCCCCchhHHHHHHHHHHhHHHHHHHHHHhhhhhccCCcCchhHHHHHHHHHHHHHHHHHHHHHHH
Q 048028 359 LLQERDI-FIRETSYNTYRHSSYVFAHSLVSMPPITTLSITFAVTTFWAVGLSGGFSGFLFFFITIFASFWAGSSFMAFI 437 (592)
Q Consensus 359 ~~~er~v-~~rE~~~~~Y~~~~y~la~~l~~lP~~~~~~~~f~~i~Y~~~gl~~~~~~f~~f~l~~~l~~~~~~~~~~~i 437 (592)
+..+|.. ..++-..--.++..+.+++++...-..++..++..++.+...|.+.. ....+...+++........+.++
T Consensus 84 i~~~~~~~~~~~l~vtp~~~~~~~~~~il~~~~~~~~~~~iil~i~~~~~~~~~~--~~~~~l~~~ll~~~~f~~~gl~~ 161 (257)
T PRK15066 84 FFSAKFQRNIEELLVSPVPNHVIILGYVGGGVARGLCVGILVTLISLFFVPLQVH--HWGIVLLTVLLTAILFSLGGLIN 161 (257)
T ss_pred HHHHHHhhhHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHh--HHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333311 01121122347778999999988777666666655555554466543 22223333333233333457888
Q ss_pred HHhhCcHHHHHHHHHHHHHHHHHhhccccCCCCCCcchhhhhccCcchHHHHHHH
Q 048028 438 AGLVSHIIIGFTIVVAILGYFLLFCGFYIPRDEIPPYWIWFHYVSLVKYPFQGVL 492 (592)
Q Consensus 438 ~~~~~~~~~a~~~~~~~~~~~~lf~Gf~i~~~~ip~~~~W~~yiSp~~y~~~~l~ 492 (592)
+.+.++.+....+...++.+++..||.+.|.+++|+|++|+.++||++|..|++=
T Consensus 162 a~~~~~~~~~~~i~~~~~~pl~flSgi~~p~~~lP~~l~~i~~~nPlt~~v~~~R 216 (257)
T PRK15066 162 AVFAKSFDDISIIPTFVLTPLTYLGGVFYSISLLPPFWQGVSKLNPIVYMVNAFR 216 (257)
T ss_pred HHHHccHHHHHHHHHHHHHHHHHHcchhccHHhChHHHHHHHHHCcHHHHHHHHH
Confidence 8888888777788888888999999999999999999999999999999999765
No 437
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=99.17 E-value=2.5e-11 Score=140.30 Aligned_cols=80 Identities=19% Similarity=0.240 Sum_probs=63.7
Q ss_pred CCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHH-HHHHHHHHcCCEEEEEecCChhHHHhhhceEEEecCC
Q 048028 110 RGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVV-NVLQRIAKSGSIVIMSIHQPSYRILSLLDRLIILSHG 188 (592)
Q Consensus 110 ~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~-~~l~~la~~g~tvi~~~H~~~~~i~~~~D~v~ll~~G 188 (592)
..+|+|++|++.|++++ .+|+++|+|||++|+|+.....+. .+++.+.+.|.++|++||+++. ....+|+..+. ++
T Consensus 389 StfS~~m~~~~~Il~~~-~~~sLvLlDE~~~GtDp~eg~ala~aile~l~~~~~~vIitTH~~el-~~~~~~~~~v~-~~ 465 (782)
T PRK00409 389 STFSGHMTNIVRILEKA-DKNSLVLFDELGAGTDPDEGAALAISILEYLRKRGAKIIATTHYKEL-KALMYNREGVE-NA 465 (782)
T ss_pred hHHHHHHHHHHHHHHhC-CcCcEEEecCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECChHHH-HHHHhcCCCeE-EE
Confidence 45999999999999988 899999999999999999988885 4678887788999999999752 33344544443 45
Q ss_pred eEee
Q 048028 189 QSVY 192 (592)
Q Consensus 189 ~~v~ 192 (592)
.+.+
T Consensus 466 ~~~~ 469 (782)
T PRK00409 466 SVEF 469 (782)
T ss_pred EEEE
Confidence 5554
No 438
>PRK13695 putative NTPase; Provisional
Probab=99.13 E-value=2.6e-11 Score=115.81 Aligned_cols=77 Identities=13% Similarity=0.145 Sum_probs=63.7
Q ss_pred CCCHHHHHHHHHHHHHhhCCcEEEEeCC--CCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCChhHHHhhhceEEEecCC
Q 048028 111 GVSGGERRRVSIGIHIIHDPILLFLDEP--TSGLDSTSAFMVVNVLQRIAKSGSIVIMSIHQPSYRILSLLDRLIILSHG 188 (592)
Q Consensus 111 ~LSgGerqRv~ia~~L~~~p~lllLDEP--tsgLD~~~~~~i~~~l~~la~~g~tvi~~~H~~~~~i~~~~D~v~ll~~G 188 (592)
.+||+|+.+..+++..+.+|+++++||| +.++| ..+.+.++++.+.|+++|+++|+. .+....|++..+.+|
T Consensus 78 ~lsgle~~~~~l~~~~l~~~~~lllDE~~~~e~~~----~~~~~~l~~~~~~~~~~i~v~h~~--~~~~~~~~i~~~~~~ 151 (174)
T PRK13695 78 NLEDLERIGIPALERALEEADVIIIDEIGKMELKS----PKFVKAVEEVLDSEKPVIATLHRR--SVHPFVQEIKSRPGG 151 (174)
T ss_pred ehHHHHHHHHHHHHhccCCCCEEEEECCCcchhhh----HHHHHHHHHHHhCCCeEEEEECch--hhHHHHHHHhccCCc
Confidence 4999999999999999999999999995 44444 445677777766789999999984 366789999999999
Q ss_pred eEeee
Q 048028 189 QSVYN 193 (592)
Q Consensus 189 ~~v~~ 193 (592)
++...
T Consensus 152 ~i~~~ 156 (174)
T PRK13695 152 RVYEL 156 (174)
T ss_pred EEEEE
Confidence 98665
No 439
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=99.12 E-value=6e-10 Score=107.08 Aligned_cols=79 Identities=15% Similarity=0.138 Sum_probs=65.2
Q ss_pred CCCCCCHHHHH------HHHHHHHHhhCCcEEEEeCCCCCCC---HHHHHHHHHHHHHHHHcCCEEEEEecCChh-----
Q 048028 108 RHRGVSGGERR------RVSIGIHIIHDPILLFLDEPTSGLD---STSAFMVVNVLQRIAKSGSIVIMSIHQPSY----- 173 (592)
Q Consensus 108 ~~~~LSgGerq------Rv~ia~~L~~~p~lllLDEPtsgLD---~~~~~~i~~~l~~la~~g~tvi~~~H~~~~----- 173 (592)
.+..+|+||+| +.........+|+++++|||++.+| ......+.+.++.+++.|.|+|+++|+...
T Consensus 68 ~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~lviD~~~~~~~~~~~~~~~~i~~l~~~l~~~g~tvi~v~~~~~~~~~~~ 147 (187)
T cd01124 68 DPDEIGPAESSLRLELIQRLKDAIEEFKAKRVVIDSVSGLLLMEQSTARLEIRRLLFALKRFGVTTLLTSEQSGLEGTGF 147 (187)
T ss_pred CccccchhhhhhhHHHHHHHHHHHHHhCCCEEEEeCcHHHhhcChHHHHHHHHHHHHHHHHCCCEEEEEeccccCCCccc
Confidence 34568999998 4555555667999999999999999 888888889999998889999999998753
Q ss_pred ---HHHhhhceEEEec
Q 048028 174 ---RILSLLDRLIILS 186 (592)
Q Consensus 174 ---~i~~~~D~v~ll~ 186 (592)
.+..++|.++.|+
T Consensus 148 ~~~~~~~~aD~ii~l~ 163 (187)
T cd01124 148 GGGDVEYLVDGVIRLR 163 (187)
T ss_pred CcCceeEeeeEEEEEE
Confidence 2567899999887
No 440
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=99.09 E-value=8.8e-11 Score=118.18 Aligned_cols=77 Identities=18% Similarity=0.250 Sum_probs=64.4
Q ss_pred CCCCCCHHH--------HHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHH-HHHHHHHHHHcCCEEEEEecCChhHHHhh
Q 048028 108 RHRGVSGGE--------RRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFM-VVNVLQRIAKSGSIVIMSIHQPSYRILSL 178 (592)
Q Consensus 108 ~~~~LSgGe--------rqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~-i~~~l~~la~~g~tvi~~~H~~~~~i~~~ 178 (592)
..+.+|||+ +||+++|+++..+++|.+| ||+.+|+.+... ++ +.++...+.|.|+.+|+.. ....
T Consensus 126 ~G~~~sgG~~~~~~~~~~q~~~~Ar~~~~~gsIt~l--~T~~~d~~~~~~~~i--~~~~~~~~~~~ivls~~la--~~~~ 199 (249)
T cd01128 126 SGKILSGGVDANALHKPKRFFGAARNIEEGGSLTII--ATALVDTGSRMDDVI--FEEFKGTGNMELVLDRRLA--ERRI 199 (249)
T ss_pred CCCCCCCCcChhhhhhhHHHHHHhcCCCCCCceEEe--eeheecCCCcccchH--HHHHhcCCCcEEEEchHHh--hCCC
Confidence 345689999 9999999999999999999 999999755543 54 5555546789999999986 4688
Q ss_pred hceEEEecCCeE
Q 048028 179 LDRLIILSHGQS 190 (592)
Q Consensus 179 ~D~v~ll~~G~~ 190 (592)
+|.|.+|+.|+.
T Consensus 200 ~paI~vl~s~sr 211 (249)
T cd01128 200 FPAIDILKSGTR 211 (249)
T ss_pred CCeEEEcCCCCc
Confidence 999999999986
No 441
>PRK03918 chromosome segregation protein; Provisional
Probab=99.08 E-value=2.5e-10 Score=135.53 Aligned_cols=78 Identities=28% Similarity=0.361 Sum_probs=69.2
Q ss_pred CCCCCCHHHHHH------HHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCChhHHHhhhce
Q 048028 108 RHRGVSGGERRR------VSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVNVLQRIAKSGSIVIMSIHQPSYRILSLLDR 181 (592)
Q Consensus 108 ~~~~LSgGerqR------v~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~H~~~~~i~~~~D~ 181 (592)
.+..|||||+++ +++|++++.+|+++++||||+|||+..+..+.+.|+.++..+.+||++||++. +...||+
T Consensus 785 ~~~~lS~G~~~~~~la~rlal~~~l~~~~~~lilDEp~~~lD~~~~~~l~~~l~~~~~~~~~iiiith~~~--~~~~~d~ 862 (880)
T PRK03918 785 PLTFLSGGERIALGLAFRLALSLYLAGNIPLLILDEPTPFLDEERRRKLVDIMERYLRKIPQVIIVSHDEE--LKDAADY 862 (880)
T ss_pred ChhhCCHhHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCcccCHHHHHHHHHHHHHHHhcCCEEEEEECCHH--HHHhCCe
Confidence 457899999995 55556788999999999999999999999999999998877889999999974 6789999
Q ss_pred EEEecC
Q 048028 182 LIILSH 187 (592)
Q Consensus 182 v~ll~~ 187 (592)
+++|..
T Consensus 863 ~~~l~~ 868 (880)
T PRK03918 863 VIRVSL 868 (880)
T ss_pred EEEEEe
Confidence 999984
No 442
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=99.05 E-value=4.9e-10 Score=104.23 Aligned_cols=62 Identities=23% Similarity=0.223 Sum_probs=48.1
Q ss_pred CCHHHHHHHHHHHHHhhCCcEEEEeCCCC----------CCCHHHHHHHHHHHHHHHHcCCEEEEEecCChh
Q 048028 112 VSGGERRRVSIGIHIIHDPILLFLDEPTS----------GLDSTSAFMVVNVLQRIAKSGSIVIMSIHQPSY 173 (592)
Q Consensus 112 LSgGerqRv~ia~~L~~~p~lllLDEPts----------gLD~~~~~~i~~~l~~la~~g~tvi~~~H~~~~ 173 (592)
.+.++.++...+.+...+|+++++|||++ +.|......+.++++...+.+.++|+++|.+..
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~vv~~~~~~~~ 139 (165)
T cd01120 68 PAAARLLSKAERLRERGGDDLIILDELTRLVRALREIREGYPGELDEELRELLERARKGGVTVIFTLQVPSG 139 (165)
T ss_pred CcHHHHHHHHHHHHhCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhcCCceEEEEEecCCc
Confidence 45566677888888999999999999994 455555666666666665568999999999864
No 443
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.04 E-value=1.1e-09 Score=108.44 Aligned_cols=61 Identities=20% Similarity=0.270 Sum_probs=44.9
Q ss_pred HHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHH-HHHHHHHHHc-CCEEEEEecCChhHHHhhh
Q 048028 117 RRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMV-VNVLQRIAKS-GSIVIMSIHQPSYRILSLL 179 (592)
Q Consensus 117 rqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i-~~~l~~la~~-g~tvi~~~H~~~~~i~~~~ 179 (592)
-+|++-...-+.+|+++|+|||.+|.|+.....+ ...++.+.+. +.++|++||+++ +.++.
T Consensus 98 ~~~~~~il~~~~~~sLvllDE~~~gT~~~d~~~i~~~il~~l~~~~~~~~i~~TH~~~--l~~~~ 160 (222)
T cd03287 98 LSETSHILSNCTSRSLVILDELGRGTSTHDGIAIAYATLHYLLEEKKCLVLFVTHYPS--LGEIL 160 (222)
T ss_pred HHHHHHHHHhCCCCeEEEEccCCCCCChhhHHHHHHHHHHHHHhccCCeEEEEcccHH--HHHHH
Confidence 3334333344567999999999999998777664 5677888776 889999999986 44444
No 444
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=99.03 E-value=6.5e-10 Score=133.27 Aligned_cols=80 Identities=24% Similarity=0.244 Sum_probs=69.4
Q ss_pred CCCCCCCHHHHHHHHHHHHHhh--------CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCChhHHHhh
Q 048028 107 ERHRGVSGGERRRVSIGIHIIH--------DPILLFLDEPTSGLDSTSAFMVVNVLQRIAKSGSIVIMSIHQPSYRILSL 178 (592)
Q Consensus 107 ~~~~~LSgGerqRv~ia~~L~~--------~p~lllLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~H~~~~~i~~~ 178 (592)
..++.|||||+++++||++|+. +|++||+||||+|||+.+...+++.|+.+.+.|++|++++|.+. -...+
T Consensus 945 r~~~~LSgGe~~~~~la~al~~s~~~s~~~~~~~l~lDEp~~~lD~~~~~~~~~~l~~l~~~g~~v~iisH~~~-l~~~i 1023 (1047)
T PRK10246 945 RDTRTLSGGESFLVSLALALALSDLVSHKTRIDSLFLDEGFGTLDSETLDTALDALDALNASGKTIGVISHVEA-MKERI 1023 (1047)
T ss_pred CCcccCCHHHHHHHHHHHHHHhhhhhhcCCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEecHHH-HHHhc
Confidence 4567899999999999999995 89999999999999999999999999999988999999999765 24455
Q ss_pred hceEEEecC
Q 048028 179 LDRLIILSH 187 (592)
Q Consensus 179 ~D~v~ll~~ 187 (592)
-.+|.|-..
T Consensus 1024 ~~qi~V~k~ 1032 (1047)
T PRK10246 1024 PVQIKVKKI 1032 (1047)
T ss_pred cceEEEEEC
Confidence 566666654
No 445
>PRK13830 conjugal transfer protein TrbE; Provisional
Probab=99.03 E-value=2.6e-09 Score=124.90 Aligned_cols=69 Identities=20% Similarity=0.140 Sum_probs=61.0
Q ss_pred hhCCcEEEEeCCCCCC-CHHHHHHHHHHHHHHHHcCCEEEEEecCChhHHH---------hhhceEEEecCCeEeeecCh
Q 048028 127 IHDPILLFLDEPTSGL-DSTSAFMVVNVLQRIAKSGSIVIMSIHQPSYRIL---------SLLDRLIILSHGQSVYNETP 196 (592)
Q Consensus 127 ~~~p~lllLDEPtsgL-D~~~~~~i~~~l~~la~~g~tvi~~~H~~~~~i~---------~~~D~v~ll~~G~~v~~g~~ 196 (592)
..+|+++++|||+.+| |+..+..+.+.++++++.|.+++++||+|+. +. +.||+.++|.+|++...|..
T Consensus 650 ~~~p~illlDE~~~~L~d~~~~~~i~~~lk~~RK~~~~vil~Tq~~~d-~~~s~~a~~i~~~~~t~i~L~n~~a~~~~~~ 728 (818)
T PRK13830 650 TGAPSLIILDEAWLMLGHPVFRDKIREWLKVLRKANCAVVLATQSISD-AERSGIIDVLKESCPTKICLPNGAAREPGTR 728 (818)
T ss_pred CCCCcEEEEECchhhcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH-HhcCchHHHHHhcCCeEEECCCccccccchH
Confidence 5799999999999999 7999999999999999889999999999974 43 68999999999988766543
No 446
>COG3910 Predicted ATPase [General function prediction only]
Probab=99.03 E-value=1e-09 Score=103.01 Aligned_cols=67 Identities=24% Similarity=0.415 Sum_probs=54.6
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCh
Q 048028 105 GDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVNVLQRIAKSGSIVIMSIHQPS 172 (592)
Q Consensus 105 g~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~H~~~ 172 (592)
|.......|-||-=---+.+. .++--+.+||||-++|.+.-+.+++..|+++++.|.-+|+.||.|-
T Consensus 123 ~~~sLh~~SHGEsf~~i~~~r-f~~~GiYiLDEPEa~LSp~RQlella~l~~la~sGaQ~IiATHSPi 189 (233)
T COG3910 123 GGRSLHHMSHGESFLAIFHNR-FNGQGIYILDEPEAALSPSRQLELLAILRDLADSGAQIIIATHSPI 189 (233)
T ss_pred CCcchhhhccchHHHHHHHHH-hccCceEEecCccccCCHHHHHHHHHHHHHHHhcCCeEEEEecChh
Confidence 333445578898654444443 4567899999999999999999999999999999989999999984
No 447
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=99.01 E-value=2.5e-09 Score=106.80 Aligned_cols=75 Identities=15% Similarity=0.231 Sum_probs=53.1
Q ss_pred CCHHHHHHHHHHHHHh----hCCcEEEEeCCCCCC----CHHHHHHHHHHHHHHHHcCCEEEEEecCChh------HHHh
Q 048028 112 VSGGERRRVSIGIHII----HDPILLFLDEPTSGL----DSTSAFMVVNVLQRIAKSGSIVIMSIHQPSY------RILS 177 (592)
Q Consensus 112 LSgGerqRv~ia~~L~----~~p~lllLDEPtsgL----D~~~~~~i~~~l~~la~~g~tvi~~~H~~~~------~i~~ 177 (592)
+|+++.++-.+.+.+- .+|+++++||||+++ |+....++.+.+++++++|.|+++++|+... .+..
T Consensus 96 ~~~~~~~~~~l~~il~~~~~~~~~~lVIDe~t~~l~~~~d~~~~~~l~~~l~~l~~~g~tvi~t~~~~~~~~~~~~~~~~ 175 (230)
T PRK08533 96 LSGNSEKRKFLKKLMNTRRFYEKDVIIIDSLSSLISNDASEVAVNDLMAFFKRISSLNKVIILTANPKELDESVLTILRT 175 (230)
T ss_pred ccChHHHHHHHHHHHHHHHhcCCCEEEEECccHHhcCCcchHHHHHHHHHHHHHHhCCCEEEEEecccccccccceeEEE
Confidence 6666655544443332 369999999999999 7788889999999998888877776654321 0234
Q ss_pred hhceEEEec
Q 048028 178 LLDRLIILS 186 (592)
Q Consensus 178 ~~D~v~ll~ 186 (592)
++|-|+.|+
T Consensus 176 ~~DgvI~L~ 184 (230)
T PRK08533 176 AATMLIRLE 184 (230)
T ss_pred eeeEEEEEE
Confidence 567777776
No 448
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=99.00 E-value=2.3e-09 Score=111.75 Aligned_cols=70 Identities=10% Similarity=0.071 Sum_probs=53.7
Q ss_pred HHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCChhHHHhhhceEEEecCCeEeeecChhhHH
Q 048028 122 IGIHIIHDPILLFLDEPTSGLDSTSAFMVVNVLQRIAKSGSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNETPSNLA 200 (592)
Q Consensus 122 ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~~~~~ 200 (592)
+..+|-.+|+++++|||.+ .+..+.++.+...+.+++.|+|..+ ..+..||+..|..|++...|.+.+..
T Consensus 211 l~~~Lr~~pd~ii~gE~r~-------~e~~~~l~a~~~g~~~~i~T~Ha~~--~~~~~~Rl~~l~~~~~~~~g~~~~~~ 280 (308)
T TIGR02788 211 LQSCLRMRPDRIILGELRG-------DEAFDFIRAVNTGHPGSITTLHAGS--PEEAFEQLALMVKSSQAGLGLDFAYI 280 (308)
T ss_pred HHHHhcCCCCeEEEeccCC-------HHHHHHHHHHhcCCCeEEEEEeCCC--HHHHHHHHHHHhhccccccCCCHHHH
Confidence 3445667899999999996 3456667776543446799999987 56779999999999988888777654
No 449
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.96 E-value=1.4e-09 Score=133.59 Aligned_cols=69 Identities=22% Similarity=0.264 Sum_probs=61.8
Q ss_pred CCCCHHHHH------HHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH-----cCCEEEEEecCChhHHHhh
Q 048028 110 RGVSGGERR------RVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVNVLQRIAK-----SGSIVIMSIHQPSYRILSL 178 (592)
Q Consensus 110 ~~LSgGerq------Rv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~la~-----~g~tvi~~~H~~~~~i~~~ 178 (592)
..||||||| |++||++++.+|++|+|||||+|||+.+...+.+.|.++.. .|.+||++||++. .+..+
T Consensus 1198 ~~lS~Gq~~~~~~~~rlala~~~~~~~~il~lDEPt~~lD~~~~~~l~~~l~~~~~~~~~~~~~~viiitHd~~-~~~~~ 1276 (1311)
T TIGR00606 1198 GRCSAGQKVLASLIIRLALAETFCLNCGIIALDEPTTNLDRENIESLAHALVEIIKSRSQQRNFQLLVITHDED-FVELL 1276 (1311)
T ss_pred CCCchhhhhHhhHhHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhhhhccCCeEEEEecCHH-HHHHH
Confidence 469999999 99999999999999999999999999999999999988742 3789999999987 46666
Q ss_pred h
Q 048028 179 L 179 (592)
Q Consensus 179 ~ 179 (592)
|
T Consensus 1277 ~ 1277 (1311)
T TIGR00606 1277 G 1277 (1311)
T ss_pred h
Confidence 4
No 450
>PRK01156 chromosome segregation protein; Provisional
Probab=98.96 E-value=1.9e-09 Score=128.17 Aligned_cols=77 Identities=30% Similarity=0.392 Sum_probs=67.2
Q ss_pred CCCCCCHHHHHHHHH------HHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH-c-C-CEEEEEecCChhHHHhh
Q 048028 108 RHRGVSGGERRRVSI------GIHIIHDPILLFLDEPTSGLDSTSAFMVVNVLQRIAK-S-G-SIVIMSIHQPSYRILSL 178 (592)
Q Consensus 108 ~~~~LSgGerqRv~i------a~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~la~-~-g-~tvi~~~H~~~~~i~~~ 178 (592)
.+..||||||+|++| |++++.+|++++|||||+|||+.....+.+.++...+ . | .++|++||++. ....
T Consensus 798 ~~~~lS~G~~~~~~la~rlala~~l~~~~~~lilDEpt~~lD~~~~~~l~~~l~~~~~~~~~~~~ii~ish~~~--~~~~ 875 (895)
T PRK01156 798 GIDSLSGGEKTAVAFALRVAVAQFLNNDKSLLIMDEPTAFLDEDRRTNLKDIIEYSLKDSSDIPQVIMISHHRE--LLSV 875 (895)
T ss_pred ccccCCHhHHHHHHHHHHHHHHHHhccCCCeEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCCCeEEEEECchH--HHHh
Confidence 467899999999975 4899999999999999999999999999999987543 3 3 48999999986 4579
Q ss_pred hceEEEec
Q 048028 179 LDRLIILS 186 (592)
Q Consensus 179 ~D~v~ll~ 186 (592)
||+++.+.
T Consensus 876 ~d~ii~~~ 883 (895)
T PRK01156 876 ADVAYEVK 883 (895)
T ss_pred cCeEEEEE
Confidence 99999997
No 451
>COG0842 ABC-type multidrug transport system, permease component [Defense mechanisms]
Probab=98.94 E-value=1.2e-07 Score=96.09 Aligned_cols=167 Identities=11% Similarity=0.165 Sum_probs=119.6
Q ss_pred hHHHHHhcCCCCCchhHHHHHHHHHHhHHHHHHHHHHhhhhhccCCcCchhHHHHHHHHHHHHHHHHHHHHHHHH-HhhC
Q 048028 364 DIFIRETSYNTYRHSSYVFAHSLVSMPPITTLSITFAVTTFWAVGLSGGFSGFLFFFITIFASFWAGSSFMAFIA-GLVS 442 (592)
Q Consensus 364 ~v~~rE~~~~~Y~~~~y~la~~l~~lP~~~~~~~~f~~i~Y~~~gl~~~~~~f~~f~l~~~l~~~~~~~~~~~i~-~~~~ 442 (592)
..+.|=..+...+ ..+++++.+...-...+...+...+..+..|.. ....+..+...+.+......++|.+++ ....
T Consensus 118 g~~~~~~~sp~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~ 195 (286)
T COG0842 118 GTLERLLVSPVSR-LFILLGKIVPYLVVASLIAGLVLLVIAFLLGVP-FLGSLLLLLLLLLLLLLATVALGLLLSTFAKS 195 (286)
T ss_pred CcHHHHHhCCCcH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3344434444332 557777777777777666666666666666632 233455555555556666677777555 3566
Q ss_pred cHHHHHHHHHHHHHHHHHhhccccCCCCCCcchhhhhccCcchHHHHHHHHHHhCCCCccccCCccccCCCCCCCCCchh
Q 048028 443 HIIIGFTIVVAILGYFLLFCGFYIPRDEIPPYWIWFHYVSLVKYPFQGVLQNEFGDPSKCFVSGVQVFDDTPFEGLPFDT 522 (592)
Q Consensus 443 ~~~~a~~~~~~~~~~~~lf~Gf~i~~~~ip~~~~W~~yiSp~~y~~~~l~~nef~~~~~C~~~~~~~~~~~~~~~~~~~~ 522 (592)
+.+.+..+...+..++..++|.+.|.+.+|.|++|+.+++|.+|+.+++-.....+..
T Consensus 196 ~~~~~~~~~~~~~~~~~~l~g~~~p~~~~p~~~~~i~~~~P~t~~~~~~~~~~~~~~~---------------------- 253 (286)
T COG0842 196 QLQCASAVGNLLILPLGFLSGVFFPLELLPAWLQGISYINPLTYAIDALRYVYLGGWR---------------------- 253 (286)
T ss_pred HHHHHHHHHHHHHHHHHHHccccCchhhhHHHHHHHHHHccHHHHHHHHHHHHhCCCc----------------------
Confidence 6788888888888899999999999999999999999999999999988754443211
Q ss_pred hHHHHhhhccccCCCccCcccccchHHHHhhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 048028 523 KIKLLENMSNVLGNNITSSTCVTTGMKLLEQKGVTDISKWKCFWITVAFGFLFRVLFYFTLLFGSKN 589 (592)
Q Consensus 523 ~~~~~~~~~~~~g~~~~~~~C~~~G~~~L~~~g~~~~~~w~~~~il~~~~~~~~~l~~~~L~~~~~~ 589 (592)
..+.|.++++++++.+++.+++...+|.+.+.
T Consensus 254 -----------------------------------~~~~~~~~~~l~~~~~v~~~~~~~~~~~~~~~ 285 (286)
T COG0842 254 -----------------------------------NDGIWISLLILLLFAVVFLLLGLLLLRRRRKL 285 (286)
T ss_pred -----------------------------------hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 11267789999999999999999988876554
No 452
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=98.94 E-value=1.3e-08 Score=110.14 Aligned_cols=160 Identities=24% Similarity=0.296 Sum_probs=98.9
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEec---C--------cccccceeEEEccCCCCCCCCCHHHHHHHH
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVL---E--------SKLLKIISAYVMQDDLLFPMLTVEETLMFA 69 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~---~--------~~~~~~~~~yv~Q~~~l~~~lTV~E~l~f~ 69 (592)
++|+|+||+|||||+++|+|..+++ .|.|.+.|+.- . ...+++.+.++.+.+.-.. .+....+.
T Consensus 161 i~I~G~sG~GKStLl~~I~~~~~~~--~gvI~~~Gerg~ev~e~~~~~l~~~~l~r~v~vv~~~~~~~~---~r~~~~~~ 235 (438)
T PRK07721 161 VGIFAGSGVGKSTLMGMIARNTSAD--LNVIALIGERGREVREFIERDLGPEGLKRSIVVVATSDQPAL---MRIKGAYT 235 (438)
T ss_pred EEEECCCCCCHHHHHHHHhcccCCC--eEEEEEEecCCccHHHHHHhhcChhhhcCeEEEEECCCCCHH---HHHHHHHH
Confidence 4799999999999999999998754 59999865432 2 1224566788876543110 11111111
Q ss_pred HHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHH-HHHhhCCcEEEEeCC--CCCCCHHH
Q 048028 70 AEFRLPRSVTKTKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIG-IHIIHDPILLFLDEP--TSGLDSTS 146 (592)
Q Consensus 70 ~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia-~~L~~~p~lllLDEP--tsgLD~~~ 146 (592)
+ -.+.|.+..-|- ++ ++-- ..++ |.+-| |++. +.+.|| |+|+|+..
T Consensus 236 a--------------~~iAEyfr~~g~-~V---ll~~---Dslt-----r~A~A~rEis-----l~~ge~P~~~G~dp~~ 284 (438)
T PRK07721 236 A--------------TAIAEYFRDQGL-NV---MLMM---DSVT-----RVAMAQREIG-----LAVGEPPTTKGYTPSV 284 (438)
T ss_pred H--------------HHHHHHHHHCCC-cE---EEEE---eChH-----HHHHHHHHHH-----HhcCCCCccccCCHHH
Confidence 1 112222222231 11 1000 0011 11111 1111 122454 67999999
Q ss_pred HHHHHHHHHHHHH--cCC-----EEEEEecCChhHHHhhhceEEEecCCeEeeecChhhH
Q 048028 147 AFMVVNVLQRIAK--SGS-----IVIMSIHQPSYRILSLLDRLIILSHGQSVYNETPSNL 199 (592)
Q Consensus 147 ~~~i~~~l~~la~--~g~-----tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~~~~ 199 (592)
...+.++++++.+ +|. ||++.+|+.+. .++|++..+.+|+++.+++..+-
T Consensus 285 ~~~l~~ller~~~~~~GsIT~~~TVlv~~hdm~e---~i~d~v~~i~dG~Ivls~~la~~ 341 (438)
T PRK07721 285 FAILPKLLERTGTNASGSITAFYTVLVDGDDMNE---PIADTVRGILDGHFVLDRQLANK 341 (438)
T ss_pred HHHHHHHHHHhcCCCCCCeeeEEEEEEECCCCCc---hhhhhEEEecCEEEEEeccHHHC
Confidence 9999999999984 575 99999999873 78999999999999999988653
No 453
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=98.88 E-value=8.9e-09 Score=100.49 Aligned_cols=57 Identities=21% Similarity=0.367 Sum_probs=43.3
Q ss_pred HHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCChhHHHhhhceEEEec
Q 048028 121 SIGIHIIHDPILLFLDEPTSGLDSTSAFMVVNVLQRIAKSGSIVIMSIHQPSYRILSLLDRLIILS 186 (592)
Q Consensus 121 ~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~H~~~~~i~~~~D~v~ll~ 186 (592)
+++++|..+|+++++|||. |......+ .+.+..|..++.|+|.++ ..+..||++.+.
T Consensus 66 ~i~~aLr~~pd~ii~gEir---d~e~~~~~----l~~a~~G~~v~~t~Ha~~--~~~~~~Rl~~l~ 122 (198)
T cd01131 66 ALKAALRQDPDVILVGEMR---DLETIRLA----LTAAETGHLVMSTLHTNS--AAKTIDRIIDVF 122 (198)
T ss_pred HHHHHhcCCcCEEEEcCCC---CHHHHHHH----HHHHHcCCEEEEEecCCc--HHHHHhHHHhhc
Confidence 4678888899999999996 55543333 345567999999999987 357789987774
No 454
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=98.88 E-value=2.4e-09 Score=130.58 Aligned_cols=76 Identities=21% Similarity=0.319 Sum_probs=67.3
Q ss_pred CCCCCCHHHHHHHHHHHHHh----hCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCChhHHHhhhceEE
Q 048028 108 RHRGVSGGERRRVSIGIHII----HDPILLFLDEPTSGLDSTSAFMVVNVLQRIAKSGSIVIMSIHQPSYRILSLLDRLI 183 (592)
Q Consensus 108 ~~~~LSgGerqRv~ia~~L~----~~p~lllLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~H~~~~~i~~~~D~v~ 183 (592)
.+..||||||+|++||++++ .+|++++|||||+|||+.+...+.++|+++++ +.++|++||++. ....||+++
T Consensus 1086 ~~~~lS~g~~~~~~l~~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~~~~~~~-~~~~i~~sh~~~--~~~~~d~~~ 1162 (1179)
T TIGR02168 1086 NLSLLSGGEKALTALALLFAIFKVKPAPFCILDEVDAPLDDANVERFANLLKEFSK-NTQFIVITHNKG--TMEVADQLY 1162 (1179)
T ss_pred cccccCccHHHHHHHHHHHHHHccCCCCeEEecCccccccHHHHHHHHHHHHHhcc-CCEEEEEEcChh--HHHHhhhHe
Confidence 45689999999999999984 67799999999999999999999999999875 478999999987 457899998
Q ss_pred Eec
Q 048028 184 ILS 186 (592)
Q Consensus 184 ll~ 186 (592)
.+.
T Consensus 1163 ~~~ 1165 (1179)
T TIGR02168 1163 GVT 1165 (1179)
T ss_pred eee
Confidence 664
No 455
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=98.86 E-value=1.6e-09 Score=94.23 Aligned_cols=58 Identities=19% Similarity=0.149 Sum_probs=45.9
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCc---ccccceeEEEccCCCCCCCCCHHHHHHHH
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLES---KLLKIISAYVMQDDLLFPMLTVEETLMFA 69 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~---~~~~~~~~yv~Q~~~l~~~lTV~E~l~f~ 69 (592)
++|+||||||||||++++. +|++.++|.++.. ...++..+|++|+ ++. -|++|||.+.
T Consensus 18 v~I~GpSGsGKSTLl~~l~--------~G~i~~~g~di~~~~~~~~~~~~~~~~q~--lf~-~ti~~Ni~~~ 78 (107)
T cd00820 18 VLITGDSGIGKTELALELI--------KRKHRLVGDDNVEIREDSKDELIGRNPEL--GLE-IRLRLNIFLI 78 (107)
T ss_pred EEEEcCCCCCHHHHHHHhh--------CCeEEEeeEeHHHhhhhhcCCEEEEechh--cch-hhHHhhceee
Confidence 4799999999999999986 3899999998743 3455667888887 443 4899999773
No 456
>PRK00064 recF recombination protein F; Reviewed
Probab=98.84 E-value=6.6e-09 Score=110.68 Aligned_cols=78 Identities=18% Similarity=0.339 Sum_probs=66.0
Q ss_pred CCCCCHHHHHHHHHHHHHh---------hCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCChhHHHhhh
Q 048028 109 HRGVSGGERRRVSIGIHII---------HDPILLFLDEPTSGLDSTSAFMVVNVLQRIAKSGSIVIMSIHQPSYRILSLL 179 (592)
Q Consensus 109 ~~~LSgGerqRv~ia~~L~---------~~p~lllLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~H~~~~~i~~~~ 179 (592)
...+|.||+|++.||+.|+ .+|+|++||||+++||+..+..+++.+.++ +..+++|+|++. .+...+
T Consensus 271 ~~~~S~Gq~~~~~lal~la~~~~~~~~~~~~~ilLlDd~~s~LD~~~~~~l~~~l~~~---~~qv~it~~~~~-~~~~~~ 346 (361)
T PRK00064 271 ADFGSTGQQKLLLLALKLAEAELLKEETGEAPILLLDDVASELDDGRRAALLERLKGL---GAQVFITTTDLE-DLADLL 346 (361)
T ss_pred HHhCChHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEccchhhhCHHHHHHHHHHHhcc---CCEEEEEcCChh-hhhhhh
Confidence 4579999999999999885 799999999999999999999999988764 457899999876 355553
Q ss_pred --ceEEEecCCeE
Q 048028 180 --DRLIILSHGQS 190 (592)
Q Consensus 180 --D~v~ll~~G~~ 190 (592)
+++..+++|++
T Consensus 347 ~~~~i~~v~~G~i 359 (361)
T PRK00064 347 ENAKIFHVEQGKI 359 (361)
T ss_pred ccCcEEEEeCCEE
Confidence 47899999986
No 457
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.83 E-value=4.5e-09 Score=103.88 Aligned_cols=57 Identities=19% Similarity=0.282 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHH-HHHHHHc-CCEEEEEecCCh
Q 048028 116 ERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVNV-LQRIAKS-GSIVIMSIHQPS 172 (592)
Q Consensus 116 erqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~-l~~la~~-g~tvi~~~H~~~ 172 (592)
|-+|++-....+.+|+++++|||.+|+|+.....+... ++.+.+. +.++|++||+++
T Consensus 96 e~~~~~~il~~~~~~sLvLlDE~~~Gt~~~dg~~la~ail~~L~~~~~~~~i~~TH~~e 154 (218)
T cd03286 96 ELSETANILRHATPDSLVILDELGRGTSTHDGYAIAHAVLEYLVKKVKCLTLFSTHYHS 154 (218)
T ss_pred HHHHHHHHHHhCCCCeEEEEecccCCCCchHHHHHHHHHHHHHHHhcCCcEEEEeccHH
Confidence 33444444444568999999999999999998888887 7888875 899999999986
No 458
>PF06422 PDR_CDR: CDR ABC transporter; InterPro: IPR010929 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). In yeast, the PDR and CDR ABC transporters display extensive sequence homology, and confer resistance to several anti-fungal compounds by actively transporting their substrates out of the cell. These transporters have two homologous halves, each with an N-terminal intracellular hydrophilic region that contains an ATP-binding site, followed by a C-terminal membrane-associated region containing six transmembrane segments []. This entry represents a domain of the PDR/CDR ABC transporter comprising extracellular loop 3, transmembrane segment 6 and a linker region.; GO: 0005524 ATP binding, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0006810 transport, 0016021 integral to membrane
Probab=98.81 E-value=5.6e-09 Score=90.69 Aligned_cols=61 Identities=23% Similarity=0.322 Sum_probs=54.0
Q ss_pred hHHHHhhhccccCCCccCcccccchHHHHh-hcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 048028 523 KIKLLENMSNVLGNNITSSTCVTTGMKLLE-QKGVTDISKWKCFWITVAFGFLFRVLFYFTLLFGSKN 589 (592)
Q Consensus 523 ~~~~~~~~~~~~g~~~~~~~C~~~G~~~L~-~~g~~~~~~w~~~~il~~~~~~~~~l~~~~L~~~~~~ 589 (592)
.++.|+..|+.+|... ++|+++|+ +||+...|+|||+||+++|+++|.++.++++.+.+..
T Consensus 15 ~~q~C~~~Ga~~G~~~------V~G~~YL~~~y~y~~sh~WRN~GIli~f~i~f~~~~~~~~e~~~~~ 76 (103)
T PF06422_consen 15 ANQVCAVVGAQPGSTY------VSGDDYLEESYGYSYSHRWRNFGILIAFWIFFIVLTLLATEFIKFE 76 (103)
T ss_pred CcCccCCCCCCCCccE------EeHHHHHhhhccccccchhhhHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 4688998888877763 89999997 7999999999999999999999999999999888643
No 459
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=98.77 E-value=9.6e-09 Score=125.43 Aligned_cols=77 Identities=19% Similarity=0.238 Sum_probs=68.5
Q ss_pred CCCCCCHHHHHHHHHHHHHhh----CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCChhHHHhhhceEE
Q 048028 108 RHRGVSGGERRRVSIGIHIIH----DPILLFLDEPTSGLDSTSAFMVVNVLQRIAKSGSIVIMSIHQPSYRILSLLDRLI 183 (592)
Q Consensus 108 ~~~~LSgGerqRv~ia~~L~~----~p~lllLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~H~~~~~i~~~~D~v~ 183 (592)
.+..||||||++++||.+++. +|++++||||++|||+.....+.++|+++++ +..+|++||++. +...||+++
T Consensus 1071 ~~~~lSgge~~~~~la~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~l~~~~~-~~~~i~~t~~~~--~~~~~d~~~ 1147 (1164)
T TIGR02169 1071 RLEAMSGGEKSLTALSFIFAIQRYKPSPFYAFDEVDMFLDGVNVERVAKLIREKAG-EAQFIVVSLRSP--MIEYADRAI 1147 (1164)
T ss_pred cchhcCcchHHHHHHHHHHHHHhcCCCCcEEecccccccCHHHHHHHHHHHHHhcC-CCeEEEEECcHH--HHHhcceeE
Confidence 356899999999999999985 7899999999999999999999999999865 467999999985 668999998
Q ss_pred EecC
Q 048028 184 ILSH 187 (592)
Q Consensus 184 ll~~ 187 (592)
.+..
T Consensus 1148 ~~~~ 1151 (1164)
T TIGR02169 1148 GVTM 1151 (1164)
T ss_pred eEEE
Confidence 8764
No 460
>PRK02224 chromosome segregation protein; Provisional
Probab=98.77 E-value=1.5e-08 Score=120.47 Aligned_cols=77 Identities=29% Similarity=0.440 Sum_probs=67.1
Q ss_pred CCCCCHHHHH------HHHHHHHHhhC-----C-cEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCC-EEEEEecCChhHH
Q 048028 109 HRGVSGGERR------RVSIGIHIIHD-----P-ILLFLDEPTSGLDSTSAFMVVNVLQRIAKSGS-IVIMSIHQPSYRI 175 (592)
Q Consensus 109 ~~~LSgGerq------Rv~ia~~L~~~-----p-~lllLDEPtsgLD~~~~~~i~~~l~~la~~g~-tvi~~~H~~~~~i 175 (592)
+..||||||+ |++++++++.+ | +++++||||++||+.....+.+.|+.+.+.|. +||++||++. .
T Consensus 779 ~~~lS~G~~~~~~lalr~a~~~~~~~~~~~~~~~~~~ilDEp~~~lD~~~~~~~~~~l~~~~~~~~~qviiish~~~--~ 856 (880)
T PRK02224 779 PEQLSGGERALFNLSLRCAIYRLLAEGIEGDAPLPPLILDEPTVFLDSGHVSQLVDLVESMRRLGVEQIVVVSHDDE--L 856 (880)
T ss_pred hhhcCccHHHHHHHHHHHHHHHHhhhcccCCCCCCceEecCCcccCCHHHHHHHHHHHHHHHhcCCCeEEEEECChH--H
Confidence 5689999999 89999988863 3 67999999999999999999999999987664 7999999986 4
Q ss_pred HhhhceEEEecC
Q 048028 176 LSLLDRLIILSH 187 (592)
Q Consensus 176 ~~~~D~v~ll~~ 187 (592)
...+|+++.+.+
T Consensus 857 ~~~ad~~~~~~~ 868 (880)
T PRK02224 857 VGAADDLVRVEK 868 (880)
T ss_pred HHhcCeeEEeec
Confidence 568999999964
No 461
>TIGR01248 drrC daunorubicin resistance protein C. The model describes daunorubicin resistance protein C in bacteria. This protein confers the function of daunorubicin resistance. The protein seems to share strong sequence similarity to UvrA proteins, which are involved in excision repair of DNA. Disruption of drrC gene showed increased sensitivity upon exposure to duanorubicin. However it failed to complement uvrA mutants to exposure to UV irradiation. The mechanism on how it confers duanomycin resistance is unclear, but has been suggested to be different from DrrA and DrrB which are antiporters.
Probab=98.71 E-value=4.5e-07 Score=84.71 Aligned_cols=130 Identities=8% Similarity=-0.067 Sum_probs=91.6
Q ss_pred HHhhhhHHHHHhcCCCCCchhHHHHHHHHHHhHHHHHHHHHHhhhhhccCCcCchhHHHHHHHHH---HHHHHHHHHHHH
Q 048028 359 LLQERDIFIRETSYNTYRHSSYVFAHSLVSMPPITTLSITFAVTTFWAVGLSGGFSGFLFFFITI---FASFWAGSSFMA 435 (592)
Q Consensus 359 ~~~er~v~~rE~~~~~Y~~~~y~la~~l~~lP~~~~~~~~f~~i~Y~~~gl~~~~~~f~~f~l~~---~l~~~~~~~~~~ 435 (592)
.-.|+..+.|-+..-. +++.++++|++...-..+++.++..++.+. .|.+.+. .+....+.+ .+.......++.
T Consensus 14 ~dr~~G~~~~l~~tP~-~~~~~~~g~~l~~~~~~~~~~~ii~~v~~~-~g~~~~~-~~~~~~~~~~~~~l~~~~f~~l~~ 90 (152)
T TIGR01248 14 IDREIGLLSRLWVLPI-HRASALLARIIAETIRAFIGTILILAIALA-LGFRFRN-GVAAALLFLLIPSIFGIAFAALVM 90 (152)
T ss_pred HHHHhHHHHHHHhCCC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCCC-cHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456667777776665 788999999999999999888887777754 4887653 232222222 222333334455
Q ss_pred HHHHhhCcHHHHHHHHHHHHHHHHHhhccccCCCCCCcchhhhhccCcchHHHHHHH
Q 048028 436 FIAGLVSHIIIGFTIVVAILGYFLLFCGFYIPRDEIPPYWIWFHYVSLVKYPFQGVL 492 (592)
Q Consensus 436 ~i~~~~~~~~~a~~~~~~~~~~~~lf~Gf~i~~~~ip~~~~W~~yiSp~~y~~~~l~ 492 (592)
.++...++.+. ......+..++.+.+|.+.|.+++|+|++|+.+++|++|+.+++=
T Consensus 91 ~~a~~~~~~~~-~~~~~~v~~pl~flsg~~~P~~~mP~wlq~ia~~~Plt~~~~~~R 146 (152)
T TIGR01248 91 AMALRKEGRFA-MEALELAQAAAAFLNPGATPIKLFPDWAQPLIAHQPISPAIEACA 146 (152)
T ss_pred HHHHHcCCHHH-HHHHHHHHHHHHHHhhhhcCHHhCcHHHHHHHhhCCccHHHHHHH
Confidence 55444555543 333455667778888999999999999999999999999999874
No 462
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.66 E-value=6.2e-07 Score=80.15 Aligned_cols=59 Identities=27% Similarity=0.316 Sum_probs=45.1
Q ss_pred CCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHH------HHHHHHHcCCEEEEEec
Q 048028 111 GVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVN------VLQRIAKSGSIVIMSIH 169 (592)
Q Consensus 111 ~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~------~l~~la~~g~tvi~~~H 169 (592)
...+++..+..+.++--.+|+++++||+..-.+......... ........+..+|+++|
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~viiiDei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 124 (148)
T smart00382 60 SGSGELRLRLALALARKLKPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTN 124 (148)
T ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHhhhhhHHHHHHHhcCCCEEEEEeC
Confidence 467778888888887777799999999999999988877664 22223334678888888
No 463
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=98.64 E-value=2.1e-07 Score=93.15 Aligned_cols=76 Identities=16% Similarity=0.244 Sum_probs=58.2
Q ss_pred CCHHHHHHHHHHHHHhh--CCcEEEEeCCCCC---CCHHHHHHHHHHHHHHHHcCCEEEEEecCChh------HHHhhhc
Q 048028 112 VSGGERRRVSIGIHIIH--DPILLFLDEPTSG---LDSTSAFMVVNVLQRIAKSGSIVIMSIHQPSY------RILSLLD 180 (592)
Q Consensus 112 LSgGerqRv~ia~~L~~--~p~lllLDEPtsg---LD~~~~~~i~~~l~~la~~g~tvi~~~H~~~~------~i~~~~D 180 (592)
.|.++++.+.....++. +|+++++||||+. .|......+++.++.++++|.|+++++|++.. .+..++|
T Consensus 101 ~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~~~~~~~~~~~~l~~l~~l~~~g~tvllt~~~~~~~~~~~~~~~~l~D 180 (234)
T PRK06067 101 NSTLANKLLELIIEFIKSKREDVIIIDSLTIFATYAEEDDILNFLTEAKNLVDLGKTILITLHPYAFSEELLSRIRSICD 180 (234)
T ss_pred CcchHHHHHHHHHHHHHhcCCCEEEEecHHHHHhcCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcCCHHHHHHHHhheE
Confidence 56788999999999997 9999999999965 44555556666677777789999999998752 1455677
Q ss_pred eEEEecC
Q 048028 181 RLIILSH 187 (592)
Q Consensus 181 ~v~ll~~ 187 (592)
-++.|+.
T Consensus 181 gvI~L~~ 187 (234)
T PRK06067 181 VYLKLRA 187 (234)
T ss_pred EEEEEEe
Confidence 7777763
No 464
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=98.63 E-value=1.8e-07 Score=93.96 Aligned_cols=132 Identities=23% Similarity=0.370 Sum_probs=80.1
Q ss_pred EEECCCCCcHHHHHHHHhCCCCCCCceeEEEECC-EecCcccccceeEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCH
Q 048028 2 AILGASGAGKTTLMDALAGRIEKESLQGAVTLNG-EVLESKLLKIISAYVMQDDLLFPMLTVEETLMFAAEFRLPRSVTK 80 (592)
Q Consensus 2 aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g-~~~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~ 80 (592)
.|.||+|+|||||.-.++=-.. +|.=.+.+ ... .....+-|+.=++ +.
T Consensus 5 ll~g~~G~GKS~lal~la~~va----~G~~~~g~~~~~---~~~~~Vlyi~~Ed------------------------~~ 53 (239)
T cd01125 5 ALVAPGGTGKSSLLLVLALAMA----LGKNLFGGGLKV---TEPGRVVYLSAED------------------------PR 53 (239)
T ss_pred EEEcCCCCCHHHHHHHHHHHHh----cCccccCCcccc---CCCceEEEEECCC------------------------CH
Confidence 5899999999999877763221 12111111 111 0122244544222 22
Q ss_pred HHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHH----------------HHhhCCcEEEEeCCCC----
Q 048028 81 TKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGI----------------HIIHDPILLFLDEPTS---- 140 (592)
Q Consensus 81 ~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~----------------~L~~~p~lllLDEPts---- 140 (592)
.+..+|+..+...+++.+..+... ..+|+.|++.+++ ....+|+++++| |++
T Consensus 54 ~~i~~Rl~~i~~~~~~~~~~~rl~-------~~~g~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~lvviD-pl~~~~~ 125 (239)
T cd01125 54 EEIHRRLEAILQHLEPDDAGDRLF-------IDSGRIQPISIAREGRIIVVPEFERIIEQLLIRRIDLVVID-PLVSFHG 125 (239)
T ss_pred HHHHHHHHHHHhhcCCcCcccceE-------EeccCCCceecccCCcccccHHHHHHHHHHHhcCCCEEEEC-ChHHhCC
Confidence 333456666666666544333222 2244555544433 235799999999 765
Q ss_pred --CCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCh
Q 048028 141 --GLDSTSAFMVVNVLQRIAKS-GSIVIMSIHQPS 172 (592)
Q Consensus 141 --gLD~~~~~~i~~~l~~la~~-g~tvi~~~H~~~ 172 (592)
.+|+.....+++.|++++++ |.+|+++.|...
T Consensus 126 ~~~~d~~~~~~~~~~L~~~a~~~g~avl~v~H~~K 160 (239)
T cd01125 126 VSENDNGAMDAVIKALRRIAAQTGAAILLVHHVRK 160 (239)
T ss_pred CCcCCHHHHHHHHHHHHHHHHHhCCEEEEEeccCc
Confidence 47999999999999999875 899999999874
No 465
>PRK13891 conjugal transfer protein TrbE; Provisional
Probab=98.61 E-value=4.5e-07 Score=106.74 Aligned_cols=69 Identities=19% Similarity=0.234 Sum_probs=55.2
Q ss_pred HHHHHhhCCcEEEEeCCCCCC-CHHHHHHHHHHHHHHHHcCCEEEEEecCChhHHHh--hhceEEEecCCeEe
Q 048028 122 IGIHIIHDPILLFLDEPTSGL-DSTSAFMVVNVLQRIAKSGSIVIMSIHQPSYRILS--LLDRLIILSHGQSV 191 (592)
Q Consensus 122 ia~~L~~~p~lllLDEPtsgL-D~~~~~~i~~~l~~la~~g~tvi~~~H~~~~~i~~--~~D~v~ll~~G~~v 191 (592)
|++++..+|+++++|||+.+| |+..+..+.+.++++++.|.+++++||+|+ ++.+ .++.++-....++.
T Consensus 680 i~~~l~~~p~illlDE~w~~L~d~~~~~~i~~~lk~~RK~g~~vil~TQs~~-d~~~s~i~~~ilen~~t~I~ 751 (852)
T PRK13891 680 IERALKGQPAVIILDEAWLMLGHPAFRAKIREWLKVLRKANCLVLMATQSLS-DAANSGILDVIVESTATKIF 751 (852)
T ss_pred HHHHhcCCCCEEEEeCchhhcCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHhhCchHHHHHHcCCccee
Confidence 567788999999999999999 799999999999999988999999999997 4554 33444333344444
No 466
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=98.60 E-value=1e-07 Score=102.65 Aligned_cols=140 Identities=20% Similarity=0.206 Sum_probs=93.4
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCcccccceeEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCH
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLESKLLKIISAYVMQDDLLFPMLTVEETLMFAAEFRLPRSVTK 80 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~ 80 (592)
++|+|+||+|||||+++|++..+++ .|.|.+.|+.. .+|+|.+....
T Consensus 159 i~I~G~sG~GKTtLl~~Ia~~~~~~--~gvI~~iGerg---------------------~ev~e~~~~~l---------- 205 (432)
T PRK06793 159 IGIFAGSGVGKSTLLGMIAKNAKAD--INVISLVGERG---------------------REVKDFIRKEL---------- 205 (432)
T ss_pred EEEECCCCCChHHHHHHHhccCCCC--eEEEEeCCCCc---------------------ccHHHHHHHHh----------
Confidence 4799999999999999999987643 46666555321 35666554211
Q ss_pred HHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHh-------hCCcEEEEeCCCCCCCHHHHHHHHHH
Q 048028 81 TKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHII-------HDPILLFLDEPTSGLDSTSAFMVVNV 153 (592)
Q Consensus 81 ~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~-------~~p~lllLDEPtsgLD~~~~~~i~~~ 153 (592)
..-|+.+. ..+ .....-|.|+|+|+..+.+.+ .++-++++||||+..|+. .++-..
T Consensus 206 -----------~~~gl~~t--vvv--~~tsd~s~~~r~ra~~~a~~iAEyfr~~G~~VLlilDslTr~a~A~--reisl~ 268 (432)
T PRK06793 206 -----------GEEGMRKS--VVV--VATSDESHLMQLRAAKLATSIAEYFRDQGNNVLLMMDSVTRFADAR--RSVDIA 268 (432)
T ss_pred -----------hhccccee--EEE--EECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEecchHHHHHHH--HHHHHH
Confidence 11122110 011 123458999999999998888 789999999999999996 555556
Q ss_pred HHHHHHcCCEEEEEecCChhHHHhhhceEEEecCCeEeeecC
Q 048028 154 LQRIAKSGSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNET 195 (592)
Q Consensus 154 l~~la~~g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~ 195 (592)
+.+....|.+..+.+|.+ ++.+-+ -...+|.+...+.
T Consensus 269 ~~e~p~~G~~~~~~s~l~--~L~ERa---g~~~~GSiT~~~t 305 (432)
T PRK06793 269 VKELPIGGKTLLMESYMK--KLLERS---GKTQKGSITGIYT 305 (432)
T ss_pred hcCCCCCCeeeeeeccch--hHHHHh---ccCCCcceEEEEE
Confidence 666554578888888843 344444 4456787755443
No 467
>TIGR00611 recf recF protein. All proteins in this family for which functions are known are DNA binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.59 E-value=8e-08 Score=102.38 Aligned_cols=60 Identities=22% Similarity=0.359 Sum_probs=55.3
Q ss_pred CCCCHHHHHHHHHHHHHhh---------CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCh
Q 048028 110 RGVSGGERRRVSIGIHIIH---------DPILLFLDEPTSGLDSTSAFMVVNVLQRIAKSGSIVIMSIHQPS 172 (592)
Q Consensus 110 ~~LSgGerqRv~ia~~L~~---------~p~lllLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~H~~~ 172 (592)
.-+|.||+|++.||..|+. +|+|||||||+++||+..+..+++.|++. |..+++|+|++.
T Consensus 274 ~~~S~Gq~r~l~lal~la~~~~l~~~~~~~pilLLDD~~seLD~~~r~~l~~~l~~~---~~qv~it~~~~~ 342 (365)
T TIGR00611 274 DFASQGQLRSLALALRLAEGELLREEGGEYPILLLDDVASELDDQRRRLLAELLQSL---GVQVFVTAISLD 342 (365)
T ss_pred HhcChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcCchhccCHHHHHHHHHHHhhc---CCEEEEEecChh
Confidence 3589999999999999999 99999999999999999999999999764 678999999975
No 468
>PRK14079 recF recombination protein F; Provisional
Probab=98.55 E-value=1.4e-07 Score=100.06 Aligned_cols=77 Identities=16% Similarity=0.239 Sum_probs=62.9
Q ss_pred CCCHHHHHHHHHHHHHh---------hCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCChhHHHhhhce
Q 048028 111 GVSGGERRRVSIGIHII---------HDPILLFLDEPTSGLDSTSAFMVVNVLQRIAKSGSIVIMSIHQPSYRILSLLDR 181 (592)
Q Consensus 111 ~LSgGerqRv~ia~~L~---------~~p~lllLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~H~~~~~i~~~~D~ 181 (592)
-+|+||+|++.+|..|+ .+|++++||||+++||...+..+.+.|.+.. .++|.+++.| ..+|+
T Consensus 263 ~~S~Gqqr~~~lal~la~~~~~~~~~~~~pilLlDd~~seLD~~~~~~l~~~l~~~~---q~~it~t~~~-----~~~~~ 334 (349)
T PRK14079 263 YASRGEARTVALALRLAEHRLLWEHFGEAPVLLVDDFTAELDPRRRGALLALAASLP---QAIVAGTEAP-----PGAAL 334 (349)
T ss_pred hCChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcccchhcCHHHHHHHHHHHhcCC---cEEEEcCCCC-----CCCce
Confidence 48999999999999998 8999999999999999999999998886532 3444445443 46999
Q ss_pred EEEecCCeEeeecC
Q 048028 182 LIILSHGQSVYNET 195 (592)
Q Consensus 182 v~ll~~G~~v~~g~ 195 (592)
++.+.+|++.-..|
T Consensus 335 ~~~~~~~~~~~~~~ 348 (349)
T PRK14079 335 TLRIEAGVFTPEAP 348 (349)
T ss_pred EEEEeccEecCCCC
Confidence 99999988754433
No 469
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=98.48 E-value=3.9e-07 Score=108.44 Aligned_cols=78 Identities=27% Similarity=0.378 Sum_probs=70.2
Q ss_pred CCCCCCHHHHHHHHHHHHHh------hC--CcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCChhHHHhhh
Q 048028 108 RHRGVSGGERRRVSIGIHII------HD--PILLFLDEPTSGLDSTSAFMVVNVLQRIAKSGSIVIMSIHQPSYRILSLL 179 (592)
Q Consensus 108 ~~~~LSgGerqRv~ia~~L~------~~--p~lllLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~H~~~~~i~~~~ 179 (592)
.+..|||||+-.++||.+|+ .+ -++|+|||||..||+.+...+++.|..+...+.+|+++||++ ++.+.+
T Consensus 812 ~~~~LSGGE~~~~sLalrLALs~~~~~~~~l~~l~LDEpf~~LD~e~l~~l~~~l~~i~~~~~qiiIISH~e--el~e~~ 889 (908)
T COG0419 812 PIKTLSGGERFLASLALRLALSDLLQGRARLELLFLDEPFGTLDEERLEKLAEILEELLSDGRQIIIISHVE--ELKERA 889 (908)
T ss_pred ccccCCchHHHHHHHHHHHHHHHHHhcccCCCeeEeeCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEeChH--HHHHhC
Confidence 67889999999988887765 45 589999999999999999999999999998899999999997 478899
Q ss_pred ceEEEecC
Q 048028 180 DRLIILSH 187 (592)
Q Consensus 180 D~v~ll~~ 187 (592)
|.++.+..
T Consensus 890 ~~~i~V~k 897 (908)
T COG0419 890 DVRIRVKK 897 (908)
T ss_pred CeEEEEEe
Confidence 99999875
No 470
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=98.42 E-value=9.3e-07 Score=93.65 Aligned_cols=56 Identities=20% Similarity=0.361 Sum_probs=43.6
Q ss_pred HHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCChhHHHhhhceEEEec
Q 048028 122 IGIHIIHDPILLFLDEPTSGLDSTSAFMVVNVLQRIAKSGSIVIMSIHQPSYRILSLLDRLIILS 186 (592)
Q Consensus 122 ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~H~~~~~i~~~~D~v~ll~ 186 (592)
+..+|-.+|+++++||+. |+.++...++ .+..|..++.|+|-.+ .....+|++-|-
T Consensus 188 l~~~lr~~pd~i~vgEir---d~~~~~~~l~----aa~tGh~v~~T~Ha~~--~~~~~~Rl~~~~ 243 (343)
T TIGR01420 188 LRAALREDPDVILIGEMR---DLETVELALT----AAETGHLVFGTLHTNS--AAQTIERIIDVF 243 (343)
T ss_pred HHHhhccCCCEEEEeCCC---CHHHHHHHHH----HHHcCCcEEEEEcCCC--HHHHHHHHHHhc
Confidence 566778899999999997 8887765444 3567999999999976 456788887653
No 471
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.39 E-value=1.1e-06 Score=96.03 Aligned_cols=137 Identities=25% Similarity=0.286 Sum_probs=80.8
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCcccccceeEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCH
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLESKLLKIISAYVMQDDLLFPMLTVEETLMFAAEFRLPRSVTK 80 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~ 80 (592)
++++||||+||||++..|++..... +|. +.++++.+|. ...++.|+|.+.++... .+.
T Consensus 259 i~LvGpnGvGKTTTiaKLA~~~~~~--~G~--------------~kV~LI~~Dt---~RigA~EQLr~~AeilG---Vpv 316 (484)
T PRK06995 259 FALMGPTGVGKTTTTAKLAARCVMR--HGA--------------SKVALLTTDS---YRIGGHEQLRIYGKILG---VPV 316 (484)
T ss_pred EEEECCCCccHHHHHHHHHHHHHHh--cCC--------------CeEEEEeCCc---cchhHHHHHHHHHHHhC---CCe
Confidence 4799999999999999999876421 131 1357788775 34689999998776542 111
Q ss_pred HHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCC-----cEEEEeCCCCCCCHHHHHHHHHHHH
Q 048028 81 TKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDP-----ILLFLDEPTSGLDSTSAFMVVNVLQ 155 (592)
Q Consensus 81 ~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p-----~lllLDEPtsgLD~~~~~~i~~~l~ 155 (592)
...+...+...+..++.+..+.+|.. .|.|.-.. .+.-..+++.++ .+|+||.++.+ ..+.+.++
T Consensus 317 ~~~~~~~Dl~~aL~~L~d~d~VLIDT---aGr~~~d~-~~~e~~~~l~~~~~p~e~~LVLdAt~~~------~~l~~i~~ 386 (484)
T PRK06995 317 HAVKDAADLRLALSELRNKHIVLIDT---IGMSQRDR-MVSEQIAMLHGAGAPVKRLLLLNATSHG------DTLNEVVQ 386 (484)
T ss_pred eccCCchhHHHHHHhccCCCeEEeCC---CCcChhhH-HHHHHHHHHhccCCCCeeEEEEeCCCcH------HHHHHHHH
Confidence 11122334445556777665555533 12222211 234444555554 68999999887 33444555
Q ss_pred HHHHcCCEEEEEec
Q 048028 156 RIAKSGSIVIMSIH 169 (592)
Q Consensus 156 ~la~~g~tvi~~~H 169 (592)
.....+.+-++.|+
T Consensus 387 ~f~~~~~~g~IlTK 400 (484)
T PRK06995 387 AYRGPGLAGCILTK 400 (484)
T ss_pred HhccCCCCEEEEeC
Confidence 55444555333343
No 472
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=98.38 E-value=2.9e-07 Score=89.65 Aligned_cols=112 Identities=16% Similarity=0.173 Sum_probs=64.2
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCcccccceeEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCH
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLESKLLKIISAYVMQDDLLFPMLTVEETLMFAAEFRLPRSVTK 80 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~ 80 (592)
++|.||||||||||.+.|++.+. . |.+ .++++|+.+ ..++..+........ ...+.
T Consensus 2 igi~G~~GsGKSTl~~~l~~~l~--~--~~~----------------~v~~~D~~~-~~~~~~~~~~~~~~~---~~~~~ 57 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQLG--N--PKV----------------VIISQDSYY-KDLSHEELEERKNNN---YDHPD 57 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHhC--C--CCe----------------EEEEecccc-cccccccHHHhccCC---CCCCC
Confidence 58999999999999999999862 1 222 233333222 222222222111100 01111
Q ss_pred HHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCH
Q 048028 81 TKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDS 144 (592)
Q Consensus 81 ~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~ 144 (592)
....+...+.++.+...+..+.++ ...|.|++++..+ .+.+|+++++|+|..+.++
T Consensus 58 ~~~~~~~~~~l~~l~~~~~~~~p~-----~d~~~~~~~~~~~---~i~~~~~vI~eg~~~~~~~ 113 (198)
T cd02023 58 AFDFDLLISHLQDLKNGKSVEIPV-----YDFKTHSRLKETV---TVYPADVIILEGILALYDK 113 (198)
T ss_pred cccHHHHHHHHHHHHCCCCEeccc-----cccccCcccCCce---ecCCCCEEEEechhhccch
Confidence 112234455666666544333332 3477887776555 5688999999999999876
No 473
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=98.34 E-value=1.1e-06 Score=84.94 Aligned_cols=71 Identities=24% Similarity=0.191 Sum_probs=50.8
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCcccccceeEEEccCC--CCCCCCCHHHHHHHHHHcc
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLESKLLKIISAYVMQDD--LLFPMLTVEETLMFAAEFR 73 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~~~~~~~~~yv~Q~~--~l~~~lTV~E~l~f~~~l~ 73 (592)
++|+||||||||||+++|+|..++ ..|.|.+++..-.....+..++++.|.+ ...+..|+.+.+..+.+.+
T Consensus 28 i~I~G~tGSGKTTll~aL~~~i~~--~~~~i~ied~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lR~~ 100 (186)
T cd01130 28 ILISGGTGSGKTTLLNALLAFIPP--DERIITIEDTAELQLPHPNWVRLVTRPGNVEGSGEVTMADLLRSALRMR 100 (186)
T ss_pred EEEECCCCCCHHHHHHHHHhhcCC--CCCEEEECCccccCCCCCCEEEEEEecCCCCCCCccCHHHHHHHHhccC
Confidence 479999999999999999999875 3599999775322222234456655543 4567789999888776543
No 474
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=98.29 E-value=1.8e-07 Score=103.63 Aligned_cols=82 Identities=15% Similarity=0.219 Sum_probs=60.5
Q ss_pred HHHHcCCcccccccccCCCCCCCCHHHHHHHHHH--HHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEE
Q 048028 90 LINQLGLRSAAKTFIGDERHRGVSGGERRRVSIG--IHIIHDPILLFLDEPTSGLDSTSAFMVVNVLQRIAKSGSIVIMS 167 (592)
Q Consensus 90 ~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia--~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~ 167 (592)
+++.+++++..+... +.+|+|++|||.|+ .++..+|+.. ...+..+.++++.+++.|.|+|++
T Consensus 99 ~~~~~~l~~~l~~i~-----~~ls~g~~qRVvIDSl~aL~~~~~~~----------~~~r~~l~~Li~~L~~~g~TvLLt 163 (484)
T TIGR02655 99 VVGGFDLSALIERIN-----YAIRKYKAKRVSIDSVTAVFQQYDAV----------SVVRREIFRLVARLKQIGVTTVMT 163 (484)
T ss_pred ccccCCHHHHHHHHH-----HHHHHhCCcEEEEeehhHhhhhcCch----------HHHHHHHHHHHHHHHHCCCEEEEE
Confidence 344455555554443 35999999999999 6666665443 467788999999998889999999
Q ss_pred ecCChhH-------H-HhhhceEEEec
Q 048028 168 IHQPSYR-------I-LSLLDRLIILS 186 (592)
Q Consensus 168 ~H~~~~~-------i-~~~~D~v~ll~ 186 (592)
+|+++.. + ..++|.|+.|+
T Consensus 164 sh~~~~~~~~~~~~~~e~laDgVI~L~ 190 (484)
T TIGR02655 164 TERIEEYGPIARYGVEEFVSDNVVILR 190 (484)
T ss_pred ecCcccccccccCCceeEeeeeEEEEE
Confidence 9987520 2 45789999987
No 475
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=98.28 E-value=1.1e-06 Score=108.14 Aligned_cols=61 Identities=26% Similarity=0.408 Sum_probs=53.2
Q ss_pred CCCCCCHHHHHHHH----HHHH--------HhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCC
Q 048028 108 RHRGVSGGERRRVS----IGIH--------IIHDPILLFLDEPTSGLDSTSAFMVVNVLQRIAKSGSIVIMSIHQP 171 (592)
Q Consensus 108 ~~~~LSgGerqRv~----ia~~--------L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~H~~ 171 (592)
...+||||||||++ +|++ +..+|++++||||++|||+.+...++++++++ |.++|+++|..
T Consensus 1244 ~~~~lSgGek~~~~~~~l~a~~~~~y~~~~~~~~p~lilLDEp~a~lD~~~~~~~~~ll~~l---~~~~i~~s~~~ 1316 (1353)
T TIGR02680 1244 RFGPASGGERALALYVPLFAAASSHYTQEAYPHAPRLILLDEAFAGVDDNARAHLFGLLRAL---DLDFVMTSERE 1316 (1353)
T ss_pred cccCCCchHHHHHHHHHHHHHHHHhhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHh---CCCEEEEccch
Confidence 35789999999996 5644 55899999999999999999999999999988 67899998863
No 476
>PRK13898 type IV secretion system ATPase VirB4; Provisional
Probab=98.23 E-value=1.4e-05 Score=94.10 Aligned_cols=49 Identities=20% Similarity=0.234 Sum_probs=44.2
Q ss_pred HHhhCCcEEEEeCCCCCCC-HHHHHHHHHHHHHHHHcCCEEEEEecCChh
Q 048028 125 HIIHDPILLFLDEPTSGLD-STSAFMVVNVLQRIAKSGSIVIMSIHQPSY 173 (592)
Q Consensus 125 ~L~~~p~lllLDEPtsgLD-~~~~~~i~~~l~~la~~g~tvi~~~H~~~~ 173 (592)
.+..+|.++++|||...|| +..+..+.+.++++++.|..++++||+|+.
T Consensus 638 ~~~g~p~il~iDE~w~~L~~~~~~~~i~~~lk~~RK~~~~~i~~TQ~~~d 687 (800)
T PRK13898 638 SLDGTPSMIVLDEAWALIDNPVFAPKIKDWLKVLRKLNTFVIFATQSVED 687 (800)
T ss_pred HhcCCCcEEEEeCChhhCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH
Confidence 3456899999999999999 888999999999999889999999999973
No 477
>TIGR03518 ABC_perm_GldF gliding motility-associated ABC transporter permease protein GldF. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldF is believed to be a ABC transporter permease protein (along with ATP-binding subunit, GldA and a sunstrate-binding subunit, GldG) and is linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldF abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=98.19 E-value=0.00022 Score=71.81 Aligned_cols=187 Identities=16% Similarity=0.117 Sum_probs=103.5
Q ss_pred HHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHhcCC---C-CChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 048028 289 IVISKRLLTNSRRMPELFGIRFGSVLVTGFILATLFWKL---Q-DSPKGALKRLGFFAFAMTTIFYICAREIPALLQERD 364 (592)
Q Consensus 289 ~~l~~R~~~~~~Rd~~~~~~r~~~~i~~~l~~G~~f~~~---~-~~~~~~~~~~g~~f~~~~~~~~~~~~~i~~~~~er~ 364 (592)
+.+.||+++...|.|..+..-.+..++.|+.. ..|.+. . .+..+.+.-.+.. ...+... +|.. --.
T Consensus 2 ~~i~~kEl~~~f~sp~~yv~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~f~~~--~~~~~~~-----~p~l--~~~ 71 (240)
T TIGR03518 2 KAIFKKEFNSFFSSPIGYLVIAVFLLANGLFL-WVFPGDFNILDYGYADLTPFFSLA--PWVFLFL-----IPAI--TMR 71 (240)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH-HHHhhhhhHHhcCcchHHHHHHHH--HHHHHHH-----HHHH--HHH
Confidence 46789999999999999887777777777442 222111 1 1111222111111 1111111 1111 124
Q ss_pred HHHHHhcCCC--------CCchhHHHHHHHHHHhHHHHHHH---HHHhhhhhccCCc---CchhHHHHHHHHHHHHHHHH
Q 048028 365 IFIRETSYNT--------YRHSSYVFAHSLVSMPPITTLSI---TFAVTTFWAVGLS---GGFSGFLFFFITIFASFWAG 430 (592)
Q Consensus 365 v~~rE~~~~~--------Y~~~~y~la~~l~~lP~~~~~~~---~f~~i~Y~~~gl~---~~~~~f~~f~l~~~l~~~~~ 430 (592)
.+.+||++|. -+.+.+.++|.+.-.-...+..+ ++....++. |.+ .+...++..++..++...+.
T Consensus 72 ~ia~Er~~GTle~Llt~Pvs~~~ivlgK~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~ 150 (240)
T TIGR03518 72 SFAEERKLGTLELLLTRPISDWQIILGKYLGSLTLVILALLPTLLYVFTIYQL-GNPVGNLDIGSTFGSYIGLLLLGSVY 150 (240)
T ss_pred HHHHHHHcCHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCccccccHHHHHHHHHHHHHHHHHH
Confidence 5567777775 35678899999988655443222 222222222 222 23445544444445555567
Q ss_pred HHHHHHHHHhhCcHHHHHHHHHHHHHHHHHhhccccCCCCC--CcchhhhhccCcchHHHH
Q 048028 431 SSFMAFIAGLVSHIIIGFTIVVAILGYFLLFCGFYIPRDEI--PPYWIWFHYVSLVKYPFQ 489 (592)
Q Consensus 431 ~~~~~~i~~~~~~~~~a~~~~~~~~~~~~lf~Gf~i~~~~i--p~~~~W~~yiSp~~y~~~ 489 (592)
.++|.++++++.+...|..++..+ .+.++.|+-. ..++ |++.+|+.|+||.+|-.+
T Consensus 151 ~aig~~iSsl~~~q~~a~~~~~~~--~~~l~~~~~~-l~~~~~~~~~~~l~~~sp~~~~~~ 208 (240)
T TIGR03518 151 TAIGLFASSLTENQIVAFIIAVFL--CFLFYFGFDG-LASLLWGGSAYTISELGLSYHYES 208 (240)
T ss_pred HHHHHHHHHHhchHHHHHHHHHHH--HHHHHHHHHH-HhhhcchhHHHHHHHcCHHHHHHH
Confidence 799999999999888775444322 2222223211 2334 788899999999877544
No 478
>PRK05399 DNA mismatch repair protein MutS; Provisional
Probab=98.16 E-value=3.2e-06 Score=99.45 Aligned_cols=68 Identities=21% Similarity=0.223 Sum_probs=49.5
Q ss_pred CCCCHHHHHHHHHHHHHhh--CCcEEEEeCC---CCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCChhHHHhhhce
Q 048028 110 RGVSGGERRRVSIGIHIIH--DPILLFLDEP---TSGLDSTSAFMVVNVLQRIAKS-GSIVIMSIHQPSYRILSLLDR 181 (592)
Q Consensus 110 ~~LSgGerqRv~ia~~L~~--~p~lllLDEP---tsgLD~~~~~~i~~~l~~la~~-g~tvi~~~H~~~~~i~~~~D~ 181 (592)
+|.|-=+.....++..|-. +++++++||| |+.+|..+ .....++.+.+. +.+++++||.. ++.+++++
T Consensus 665 ~g~STF~~E~~~~~~il~~at~~sLvllDE~GrGTs~~dg~a--ia~aile~l~~~~~~~~l~aTH~~--el~~l~~~ 738 (854)
T PRK05399 665 SGRSTFMVEMTETANILNNATERSLVLLDEIGRGTSTYDGLS--IAWAVAEYLHDKIGAKTLFATHYH--ELTELEEK 738 (854)
T ss_pred cCcccHHHHHHHHHHHHHhCCCCcEEEEecCCCCCCcchhHH--HHHHHHHHHHhcCCceEEEEechH--HHHHHhhh
Confidence 3566666666666666544 8999999999 88888444 455566777765 57899999994 57778775
No 479
>PF12679 ABC2_membrane_2: ABC-2 family transporter protein
Probab=98.15 E-value=0.00082 Score=68.38 Aligned_cols=95 Identities=15% Similarity=0.183 Sum_probs=56.7
Q ss_pred hHHHHHhcCCC--------CCchhHHHHHHHHHHhHHHH--HHHHHH--h-hhhhc-cCCcCchhHHHHHHHHHHHHHH-
Q 048028 364 DIFIRETSYNT--------YRHSSYVFAHSLVSMPPITT--LSITFA--V-TTFWA-VGLSGGFSGFLFFFITIFASFW- 428 (592)
Q Consensus 364 ~v~~rE~~~~~--------Y~~~~y~la~~l~~lP~~~~--~~~~f~--~-i~Y~~-~gl~~~~~~f~~f~l~~~l~~~- 428 (592)
+.+.+|+++|. ++...++++|.++.+...++ ...+.. + ..++. .|.+.+...++...+......+
T Consensus 88 ~~ia~E~e~gTi~~lls~PisR~~i~~gK~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (277)
T PF12679_consen 88 DLIAGERERGTIELLLSKPISRSEILLGKFLAAILFSLLLLIALLVGYLLTLVLIAISGIPIDLSSFLLLLLLFVLLLLA 167 (277)
T ss_pred HHHHhccccCEeeHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHH
Confidence 35667777774 67889999999998877422 111111 1 11222 3445555555544433333332
Q ss_pred --HHHHHHHHHHHhhCcHHHHHHHHHHHHHHH
Q 048028 429 --AGSSFMAFIAGLVSHIIIGFTIVVAILGYF 458 (592)
Q Consensus 429 --~~~~~~~~i~~~~~~~~~a~~~~~~~~~~~ 458 (592)
+..+++.++|+++++...|..+...+....
T Consensus 168 ~~~~~sl~~~~S~~~~~~~~a~~~~~~~~~~~ 199 (277)
T PF12679_consen 168 VLVFISLGLLISSLFRSSASAILASLGLLFLL 199 (277)
T ss_pred HHHHHHHHHHHHHHHCcHHHHHHHHHHHHHHH
Confidence 457899999999998877766655544333
No 480
>PRK13873 conjugal transfer ATPase TrbE; Provisional
Probab=98.14 E-value=1.6e-05 Score=93.55 Aligned_cols=46 Identities=28% Similarity=0.247 Sum_probs=42.4
Q ss_pred hhCCcEEEEeCCCCCCC-HHHHHHHHHHHHHHHHcCCEEEEEecCCh
Q 048028 127 IHDPILLFLDEPTSGLD-STSAFMVVNVLQRIAKSGSIVIMSIHQPS 172 (592)
Q Consensus 127 ~~~p~lllLDEPtsgLD-~~~~~~i~~~l~~la~~g~tvi~~~H~~~ 172 (592)
-.+|+++++|||+.+|| +..+..+.+.++.+++.|.+++++||+|+
T Consensus 633 ~~~p~illlDE~~~~Ld~~~~~~~i~~~lk~~RK~~~~~i~~TQ~~~ 679 (811)
T PRK13873 633 DGRPTLLILDEAWLFLDDPVFAAQLREWLKTLRKKNVSVIFATQSLA 679 (811)
T ss_pred cCCCcEEEEcChhhhCCCHHHHHHHHHHHHHHHHcCCEEEEEECCHH
Confidence 45899999999999999 67899999999999988999999999987
No 481
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=98.12 E-value=3.1e-05 Score=74.64 Aligned_cols=68 Identities=10% Similarity=0.119 Sum_probs=45.1
Q ss_pred HHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHH--HHHHHhh-CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc
Q 048028 85 ERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVS--IGIHIIH-DPILLFLDEPTSGLDSTSAFMVVNVLQRIAKS 160 (592)
Q Consensus 85 ~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~--ia~~L~~-~p~lllLDEPtsgLD~~~~~~i~~~l~~la~~ 160 (592)
..+.+.++..++.-. .+++ ....+|+||++++. +.+.+-. ++++ .|+|++|.....++.+.|.++.++
T Consensus 125 ~~i~~~l~~~~~~~i---iv~n-K~Dl~~~~~~~~~~~~i~~~l~~~~~~~----~~~Sa~~~~gi~~l~~~i~~~~~~ 195 (196)
T PRK00454 125 LQMIEWLKEYGIPVL---IVLT-KADKLKKGERKKQLKKVRKALKFGDDEV----ILFSSLKKQGIDELRAAIAKWLAE 195 (196)
T ss_pred HHHHHHHHHcCCcEE---EEEE-CcccCCHHHHHHHHHHHHHHHHhcCCce----EEEEcCCCCCHHHHHHHHHHHhcC
Confidence 345556666655311 1221 23358999999987 5555443 3444 399999999999999999988765
No 482
>PF13558 SbcCD_C: Putative exonuclease SbcCD, C subunit; PDB: 3QG5_B 3QF7_A 3THO_A 3EUK_H 3EUJ_A 3AV0_B 3AUY_B 3AUX_A.
Probab=98.10 E-value=5.6e-06 Score=70.19 Aligned_cols=48 Identities=31% Similarity=0.479 Sum_probs=37.2
Q ss_pred CCCCCHHHH-HHHHHHHHHh------h------CCcEEEEeCCCCCCCHHHHHHHHHHHHH
Q 048028 109 HRGVSGGER-RRVSIGIHII------H------DPILLFLDEPTSGLDSTSAFMVVNVLQR 156 (592)
Q Consensus 109 ~~~LSgGer-qRv~ia~~L~------~------~p~lllLDEPtsgLD~~~~~~i~~~l~~ 156 (592)
.+++||||| ..+.++.++. . .|++++||||+++||+.....+++.+++
T Consensus 30 ~~~~SGGEk~~~~~l~l~aal~~~~~~~~~~~~~~~~l~lDEaF~~lD~~~~~~~~~~l~~ 90 (90)
T PF13558_consen 30 FGTLSGGEKQFPFYLALAAALAALYSSSSGRGDSPRLLFLDEAFSKLDEENIERLMDLLRQ 90 (90)
T ss_dssp GGGS-HHHHHHHHHHHHHHHHHHHHHTTSTS-TTBSEEEEESTTTTCGHHHHHHHHHHHHH
T ss_pred CCCCChhHhHHHHHHHHHHHHHHHHhhhcCCCCCcCEEEEeCCCCcCCHHHHHHHHHHHhC
Confidence 457999999 4454444432 2 3799999999999999999999999875
No 483
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=98.09 E-value=9.7e-07 Score=87.95 Aligned_cols=40 Identities=15% Similarity=0.207 Sum_probs=26.5
Q ss_pred HHHHHHHHHHH-HHcCCEEEEEecCCh-------hHHHhhhceEEEec
Q 048028 147 AFMVVNVLQRI-AKSGSIVIMSIHQPS-------YRILSLLDRLIILS 186 (592)
Q Consensus 147 ~~~i~~~l~~l-a~~g~tvi~~~H~~~-------~~i~~~~D~v~ll~ 186 (592)
..++...|+++ .+.|.|+|+++|... ..+..++|.|+.|+
T Consensus 141 ~r~~~~~l~~~l~~~~~tvil~~~~~~~~~~~~~~~~~~l~D~vI~L~ 188 (229)
T TIGR03881 141 ARKYSYYLKRVLNRWNFTILLTSQYAITTSQAFGFGIEHVADGIIRFR 188 (229)
T ss_pred HHHHHHHHHHHHHhCCCEEEEEecccccCCCCcccceEEEEeEEEEEE
Confidence 34444445554 456999999999643 12456789998887
No 484
>COG1682 TagG ABC-type polysaccharide/polyol phosphate export systems, permease component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=98.08 E-value=0.0015 Score=66.55 Aligned_cols=203 Identities=10% Similarity=0.055 Sum_probs=123.3
Q ss_pred HHHHHHHHHHHHHHHhhcChHHH-H----HHHHHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHHHHHHH-HH--HHHHH
Q 048028 284 FWIETIVISKRLLTNSRRMPELF-G----IRFGSVLVTGFILATLFWKLQDSPKGALKRLGFFAFAMTTI-FY--ICARE 355 (592)
Q Consensus 284 ~~~q~~~l~~R~~~~~~Rd~~~~-~----~r~~~~i~~~l~~G~~f~~~~~~~~~~~~~~g~~f~~~~~~-~~--~~~~~ 355 (592)
.+...+.|.+|+.+..+|+..+= . -=+++.+++++++|.++-+-+. +....+...+... ++ +....
T Consensus 16 ~~~li~~L~~~eik~Ryr~s~LG~~W~~l~P~~~~~~~~~vf~~l~~~~~~------~~~~~l~~G~~~w~f~~~~i~~~ 89 (263)
T COG1682 16 YRRLIGALVKREIKTRYRRSVLGYLWSLLNPLLMILVYTLVFGALLRSPGL------NFLAYLLAGLILWFFFSEAISEG 89 (263)
T ss_pred HHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHhCCCc------chHHHHHHHHHHHHHHHHHHHhH
Confidence 35667788999999988887532 2 2234445555555555433211 1111111111111 11 11223
Q ss_pred HHHHHhhhhHHHHHhcCCCCCchhHHHHHHHHHHhHHHHHHHHHHhhhhhccCCcCchhHHHHHHHHHHHHHHHHHHHHH
Q 048028 356 IPALLQERDIFIRETSYNTYRHSSYVFAHSLVSMPPITTLSITFAVTTFWAVGLSGGFSGFLFFFITIFASFWAGSSFMA 435 (592)
Q Consensus 356 i~~~~~er~v~~rE~~~~~Y~~~~y~la~~l~~lP~~~~~~~~f~~i~Y~~~gl~~~~~~f~~f~l~~~l~~~~~~~~~~ 435 (592)
...+.+...++.|-+ .++..+.+++++.++--..+..++....+-|.-+.+ ...++.....+.+..+.+.+++.
T Consensus 90 ~~s~~~n~~li~k~~----~p~~~~~~~~~~~~~~~~~i~~iiil~~~i~~~~~~--s~~~l~~~~~l~~l~l~~~g~~l 163 (263)
T COG1682 90 AGSVVANAALIKKIN----FPPLILPVARTLSRLFNFLIHLIIILIFLIILGVEP--SWHWLLLLPALLLLILFSVGLGL 163 (263)
T ss_pred HHHhhhhHHHHhCCC----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC--cHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555544332 378899999999998776666655555554444433 33444444445555556667787
Q ss_pred HHHHhhCcHHHHHHHHHHHHHHHHHhhccccCCCCCCcchhhhhccCcchHHHHHHHHHHhCC
Q 048028 436 FIAGLVSHIIIGFTIVVAILGYFLLFCGFYIPRDEIPPYWIWFHYVSLVKYPFQGVLQNEFGD 498 (592)
Q Consensus 436 ~i~~~~~~~~~a~~~~~~~~~~~~lf~Gf~i~~~~ip~~~~W~~yiSp~~y~~~~l~~nef~~ 498 (592)
++|.++.-+.--..+.+.++-+++..+|.+-+.+.+|.-++|+.++||+.+-.|.+=..-+++
T Consensus 164 ~~a~l~v~fRD~~~i~~~v~~~~f~~sPIi~~~~~~p~~~~~~~~~NP~~~iie~~R~~~~~~ 226 (263)
T COG1682 164 ILASLGVRFRDLGQILGVVLQLLFFLSPIIYPVSNLPEQLRELVLLNPLTHIIESFRAPLLGG 226 (263)
T ss_pred HHHhHhhhcccHHHHHHHHHHHHHHhCceeeehhhccHHHHHHHHHCcHHHHHHHHHHHHhCC
Confidence 877776544222345566677888899999999999999999999999999999876544443
No 485
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.02 E-value=1.4e-05 Score=97.74 Aligned_cols=151 Identities=20% Similarity=0.356 Sum_probs=80.5
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCcccccceeEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCH
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLESKLLKIISAYVMQDDLLFPMLTVEETLMFAAEFRLPRSVTK 80 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~ 80 (592)
++|+|++|+|||||++++++.... ..+|.+.+++..+... .+ .+-.++... .+...
T Consensus 210 vgI~G~gGiGKTTLA~~l~~~l~~-~F~g~vfv~~~~v~~~--~~--~~~~~~~~~-------~~~~~------------ 265 (1153)
T PLN03210 210 VGIWGSSGIGKTTIARALFSRLSR-QFQSSVFIDRAFISKS--ME--IYSSANPDD-------YNMKL------------ 265 (1153)
T ss_pred EEEEcCCCCchHHHHHHHHHHHhh-cCCeEEEeeccccccc--hh--hcccccccc-------cchhH------------
Confidence 589999999999999999887653 3468998876332211 00 011110000 00000
Q ss_pred HHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH--
Q 048028 81 TKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVNVLQRIA-- 158 (592)
Q Consensus 81 ~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~la-- 158 (592)
...++.+.++++..++. +. .+ ++.|+|+ ..++-+|+||+- |... .++.+....
T Consensus 266 ~l~~~~l~~il~~~~~~------~~-----~~-~~~~~~L------~~krvLLVLDdv----~~~~---~l~~L~~~~~~ 320 (1153)
T PLN03210 266 HLQRAFLSEILDKKDIK------IY-----HL-GAMEERL------KHRKVLIFIDDL----DDQD---VLDALAGQTQW 320 (1153)
T ss_pred HHHHHHHHHHhCCCCcc------cC-----CH-HHHHHHH------hCCeEEEEEeCC----CCHH---HHHHHHhhCcc
Confidence 01123344444444331 11 12 5566663 355667888983 4333 344444432
Q ss_pred -HcCCEEEEEecCChhHHHhh-hceEEEecCCeEeeecChhhHHHHHHHcC
Q 048028 159 -KSGSIVIMSIHQPSYRILSL-LDRLIILSHGQSVYNETPSNLAQFFAEFG 207 (592)
Q Consensus 159 -~~g~tvi~~~H~~~~~i~~~-~D~v~ll~~G~~v~~g~~~~~~~~f~~~g 207 (592)
..|.+||+|||+... +... +|+++-+.. =+.+++.+.|....
T Consensus 321 ~~~GsrIIiTTrd~~v-l~~~~~~~~~~v~~------l~~~ea~~LF~~~A 364 (1153)
T PLN03210 321 FGSGSRIIVITKDKHF-LRAHGIDHIYEVCL------PSNELALEMFCRSA 364 (1153)
T ss_pred CCCCcEEEEEeCcHHH-HHhcCCCeEEEecC------CCHHHHHHHHHHHh
Confidence 347899999999752 3222 566655431 13456777776643
No 486
>PRK15176 Vi polysaccharide export inner membrane protein VexB; Provisional
Probab=98.00 E-value=0.0048 Score=63.01 Aligned_cols=70 Identities=17% Similarity=0.202 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHHHHHh---hCcHHHHHHHHHHHHHHHHHhhccccCCCCCCcchhhhhccCcchHHHHHHHHHHhC
Q 048028 425 ASFWAGSSFMAFIAGL---VSHIIIGFTIVVAILGYFLLFCGFYIPRDEIPPYWIWFHYVSLVKYPFQGVLQNEFG 497 (592)
Q Consensus 425 l~~~~~~~~~~~i~~~---~~~~~~a~~~~~~~~~~~~lf~Gf~i~~~~ip~~~~W~~yiSp~~y~~~~l~~nef~ 497 (592)
+..+.+.++|.++|++ .++.+ .+.++++.+++..+|.+-+.+.+|++++|+.+.||+.+..|+.=..-++
T Consensus 157 l~~l~~~glglils~l~v~~rDi~---~i~~~~l~~lf~~SpI~y~~~~vp~~~~~il~~NPl~~~ie~~R~~~~~ 229 (264)
T PRK15176 157 IAWLLGLSFGYFCDALSERFPLVY---KAVPVMLRPMFLISAVFYTANELPYSLLSIFSWNPLLHANEIVREGMFE 229 (264)
T ss_pred HHHHHHHHHHHHHHHHHHhCccHH---HHHHHHHHHHHHHhhHhhhHHhCcHHHHHHHHHCcHHHHHHHHHHHHhc
Confidence 3444445666666665 45554 3455667778888999889999999999999999999999987654443
No 487
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=97.98 E-value=6e-06 Score=79.80 Aligned_cols=73 Identities=21% Similarity=0.252 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCChh-HHHhhhceEEEecCC
Q 048028 114 GGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVNVLQRIAKSGSIVIMSIHQPSY-RILSLLDRLIILSHG 188 (592)
Q Consensus 114 gGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~H~~~~-~i~~~~D~v~ll~~G 188 (592)
.|+-.|..||..+..+|+.+..+| +.+||....++.+.+++..++|.+|++.+|.... .....||++++++.+
T Consensus 60 ~g~idr~~L~~~vf~~~~~~~~le--~ilhP~i~~~i~~~i~~~~~~~~~vvi~~pll~e~~~~~~~D~vv~V~~~ 133 (188)
T TIGR00152 60 DGELDRKALGERVFNDPEELKWLN--NLLHPLIREWMKKLLAQFQSKLAYVLLDVPLLFENKLRSLCDRVIVVDVS 133 (188)
T ss_pred CCCCCHHHHHHHHhCCHHHHHHHH--HhhCHHHHHHHHHHHHHhhcCCCEEEEEchHhhhCCcHHhCCEEEEEECC
Confidence 378899999999999999988777 8999999999999998886667799999998741 356789999888643
No 488
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=97.98 E-value=1.3e-05 Score=74.32 Aligned_cols=65 Identities=12% Similarity=0.125 Sum_probs=41.4
Q ss_pred HHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHH-----hhCCcEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 048028 85 ERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHI-----IHDPILLFLDEPTSGLDSTSAFMVVNVLQRI 157 (592)
Q Consensus 85 ~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L-----~~~p~lllLDEPtsgLD~~~~~~i~~~l~~l 157 (592)
.++.+.++..+..- ..+.+ +...++++++++.....+. ...|+++ |+|++|.....++.+.|.++
T Consensus 100 ~~~~~~l~~~~~~v---i~v~n-K~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~Sa~~~~~~~~l~~~l~~~ 169 (170)
T cd01876 100 LEMLDWLEELGIPF---LVVLT-KADKLKKSELAKALKEIKKELKLFEIDPPII----LFSSLKGQGIDELRALIEKW 169 (170)
T ss_pred HHHHHHHHHcCCCE---EEEEE-chhcCChHHHHHHHHHHHHHHHhccCCCceE----EEecCCCCCHHHHHHHHHHh
Confidence 34555666655321 11222 2334788888887666553 3345555 99999999999999988764
No 489
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=97.93 E-value=4.8e-06 Score=79.72 Aligned_cols=62 Identities=18% Similarity=0.335 Sum_probs=40.8
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCccc-cc-ceeEEEccCCCCCCCCCHHHHHHH
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLESKL-LK-IISAYVMQDDLLFPMLTVEETLMF 68 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~~~-~~-~~~~yv~Q~~~l~~~lTV~E~l~f 68 (592)
++|+|+||||||||+++|+|++.+ +.++|.++.... .+ ...++.+|+...++.+++.++..+
T Consensus 6 i~l~G~sGsGKSTl~~~la~~l~~------~~i~gd~~~~~~~~r~~~~g~~~~~~~~~~~~~~~~~~~~ 69 (176)
T PRK09825 6 YILMGVSGSGKSLIGSKIAALFSA------KFIDGDDLHPAKNIDKMSQGIPLTDEDRLPWLERLNDASY 69 (176)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCC------EEECCcccCCHhHHHHHhcCCCCCcccchHHHHHHHHHHH
Confidence 479999999999999999998653 467887664321 11 123566666554455555555443
No 490
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=97.90 E-value=2.7e-05 Score=88.56 Aligned_cols=108 Identities=22% Similarity=0.305 Sum_probs=67.4
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCC------ceeEEEECCEecCcccccceeEEEccCCCCCCCCCHHHHHHHHHHccC
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKES------LQGAVTLNGEVLESKLLKIISAYVMQDDLLFPMLTVEETLMFAAEFRL 74 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~------~~G~I~i~g~~~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~ 74 (592)
++|.||||+|||||.+++.+..++.. ..+-|.+||..+.. ..+. + ++-.+.
T Consensus 178 vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~-d~~~----------------i-~~~llg----- 234 (615)
T TIGR02903 178 IILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRW-DPRE----------------V-TNPLLG----- 234 (615)
T ss_pred EEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccC-CHHH----------------H-hHHhcC-----
Confidence 47899999999999999998764211 12345566543310 0000 0 011111
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHH
Q 048028 75 PRSVTKTKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVNVL 154 (592)
Q Consensus 75 ~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l 154 (592)
.. .+...+...+.++..|+.+..+..+ ..+||| +|+||| +..||+..+..+.+.|
T Consensus 235 --~~-~~~~~~~a~~~l~~~gl~~~~~g~v-----~~asgG----------------vL~LDE-i~~Ld~~~Q~~Ll~~L 289 (615)
T TIGR02903 235 --SV-HDPIYQGARRDLAETGVPEPKTGLV-----TDAHGG----------------VLFIDE-IGELDPLLQNKLLKVL 289 (615)
T ss_pred --Cc-cHHHHHHHHHHHHHcCCCchhcCch-----hhcCCC----------------eEEEec-cccCCHHHHHHHHHHH
Confidence 01 1111234555677888876665443 458888 999999 7999999999999888
Q ss_pred HH
Q 048028 155 QR 156 (592)
Q Consensus 155 ~~ 156 (592)
++
T Consensus 290 e~ 291 (615)
T TIGR02903 290 ED 291 (615)
T ss_pred hh
Confidence 75
No 491
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.90 E-value=5.9e-05 Score=67.91 Aligned_cols=55 Identities=22% Similarity=0.253 Sum_probs=39.2
Q ss_pred HHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH-----cCCEEEEEecCCh
Q 048028 117 RRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVNVLQRIAK-----SGSIVIMSIHQPS 172 (592)
Q Consensus 117 rqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~la~-----~g~tvi~~~H~~~ 172 (592)
++..........++.++++||.-.. +......+.+.++.... .+..+|++++.+.
T Consensus 72 ~~~~~~~~~~~~~~~~lilDe~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 72 LVRLLFELAEKAKPGVLFIDEIDSL-SRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred hHhHHHHhhccCCCeEEEEeChhhh-hHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 3444445556678999999998765 56667778888888753 4667888888654
No 492
>TIGR01026 fliI_yscN ATPase FliI/YscN family. This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.
Probab=97.86 E-value=2.9e-05 Score=84.47 Aligned_cols=63 Identities=19% Similarity=0.234 Sum_probs=51.8
Q ss_pred EEeCC--CCCCCHHHHHHHHHHHHHHHHcCC-------EEEEEecCChhHHHhhhceEEEecCCeEeeecChhhH
Q 048028 134 FLDEP--TSGLDSTSAFMVVNVLQRIAKSGS-------IVIMSIHQPSYRILSLLDRLIILSHGQSVYNETPSNL 199 (592)
Q Consensus 134 lLDEP--tsgLD~~~~~~i~~~l~~la~~g~-------tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~~~~ 199 (592)
.+.|| +.|+|+.....+-+++++....+. ||++..||.. ..++|++.-+.+|+++.++..++.
T Consensus 275 ~~ge~P~~~Gypp~~~~~l~~l~ERag~~~~GSIT~i~tVl~~~~d~~---dpi~d~~~~i~dG~ivLsr~la~~ 346 (440)
T TIGR01026 275 AAGEPPATKGYTPSVFSTLPRLLERAGASGKGSITAFYTVLVEGDDMN---EPIADSVRGILDGHIVLSRALAQR 346 (440)
T ss_pred hcCCCCcccccChhHHHHHHHHHHHhccCCCCeeeEEEEEEccCcCCC---cchhhhhccccceEEEEecchhhC
Confidence 34675 459999999999999999887666 7888888875 357899999999999999887654
No 493
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=97.80 E-value=8.2e-05 Score=81.47 Aligned_cols=93 Identities=16% Similarity=0.299 Sum_probs=62.8
Q ss_pred hCCcEEEEeCCCCCCCHH-HHHHHHHHHHHHHHcCCEEEEEe-cCChhHHHhhhceEE-EecCCeEeeecChhh------
Q 048028 128 HDPILLFLDEPTSGLDST-SAFMVVNVLQRIAKSGSIVIMSI-HQPSYRILSLLDRLI-ILSHGQSVYNETPSN------ 198 (592)
Q Consensus 128 ~~p~lllLDEPtsgLD~~-~~~~i~~~l~~la~~g~tvi~~~-H~~~~~i~~~~D~v~-ll~~G~~v~~g~~~~------ 198 (592)
.+|++|++|||...+|.. ...++...+..+.+.|+.+|+++ |+|. ++..+.||+. -+..|-++...+|+.
T Consensus 193 ~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~-~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~I 271 (440)
T PRK14088 193 KKVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQ-KLSEFQDRLVSRFQMGLVAKLEPPDEETRKKI 271 (440)
T ss_pred hcCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHH-HHHHHHHHHhhHHhcCceEeeCCCCHHHHHHH
Confidence 379999999999988765 45778899999888787877776 6665 5666667665 356787877777763
Q ss_pred HHHHHHHcCCCCCCCCChHHHHHHh
Q 048028 199 LAQFFAEFGHPVPENENKIEFALDL 223 (592)
Q Consensus 199 ~~~~f~~~g~~~p~~~n~~d~~~~~ 223 (592)
+.+..+..+...|+ +..+|+.+-
T Consensus 272 L~~~~~~~~~~l~~--ev~~~Ia~~ 294 (440)
T PRK14088 272 ARKMLEIEHGELPE--EVLNFVAEN 294 (440)
T ss_pred HHHHHHhcCCCCCH--HHHHHHHhc
Confidence 12233334554442 345555543
No 494
>PF12698 ABC2_membrane_3: ABC-2 family transporter protein; PDB: 2P0S_B 3CNI_A.
Probab=97.79 E-value=4.8e-06 Score=86.42 Aligned_cols=127 Identities=17% Similarity=0.260 Sum_probs=0.0
Q ss_pred Hhhhh--HHHHHhcCCCCCchhHHHHHHHHHHhHHHHHHHHHHhhhhhccC---CcCchhHHHHHHHHHHHHHHHHHHHH
Q 048028 360 LQERD--IFIRETSYNTYRHSSYVFAHSLVSMPPITTLSITFAVTTFWAVG---LSGGFSGFLFFFITIFASFWAGSSFM 434 (592)
Q Consensus 360 ~~er~--v~~rE~~~~~Y~~~~y~la~~l~~lP~~~~~~~~f~~i~Y~~~g---l~~~~~~f~~f~l~~~l~~~~~~~~~ 434 (592)
.+||. +..|-+..| -++..|++++.+..+...++..+++..+ +.| ++.. +++..++.+++..++..+++
T Consensus 183 ~~ek~~~~~~~l~~~~-~~~~~~~~~~~l~~~~~~~i~~~i~~~i---~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~ 256 (344)
T PF12698_consen 183 VEEKESGTRERLLSSG-VSPWSYWLSKFLAYFLVSLIQSLIIIII---IFGISGIPFG--NFLLLLLLLLLFSLAFISFG 256 (344)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhHhhhhhhHhhhccc-CCHHHHHHHHHHHHhhHHHHHHHHHHHH---HhccccCccc--chHHHHHHHHHHHHHHHHHH
Confidence 44544 444444555 4888999999999999988888777664 334 4433 44445556666777788899
Q ss_pred HHHHHhhCcHHHHHHHHHHHHHHHHHhhccccCCCCCCcchhhhhccCcchHHHHHHH
Q 048028 435 AFIAGLVSHIIIGFTIVVAILGYFLLFCGFYIPRDEIPPYWIWFHYVSLVKYPFQGVL 492 (592)
Q Consensus 435 ~~i~~~~~~~~~a~~~~~~~~~~~~lf~Gf~i~~~~ip~~~~W~~yiSp~~y~~~~l~ 492 (592)
.+++.++++...|..+++++..+.+.++|.+.+.+.+|.+++|+.++.|..|..+++.
T Consensus 257 ~~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~P~~~~~~~~~ 314 (344)
T PF12698_consen 257 FLISSFFKNSSTAISVASIIILLLSFLSGGFFPLSSLPSFLQWISSFLPFYWFIQGLR 314 (344)
T ss_dssp ----------------------------------------------------------
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHhhHHHHHHHHH
Confidence 9999999999888877777776566666777778999999999999999999887664
No 495
>PRK13764 ATPase; Provisional
Probab=97.77 E-value=0.00011 Score=82.63 Aligned_cols=63 Identities=19% Similarity=0.337 Sum_probs=48.4
Q ss_pred HhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEec---------------CChhHHHhhhceEEEecCCeE
Q 048028 126 IIHDPILLFLDEPTSGLDSTSAFMVVNVLQRIAKSGSIVIMSIH---------------QPSYRILSLLDRLIILSHGQS 190 (592)
Q Consensus 126 L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~H---------------~~~~~i~~~~D~v~ll~~G~~ 190 (592)
|..+|+++++||.-..-| ++.+..++..|..++.|.| ++. .+...+|+++.+++|++
T Consensus 321 LR~rPD~IivGEiRd~Et-------~~~~~~l~~ag~GvigTlHA~sa~~Ai~Rl~~~v~lg-~i~~iID~IV~I~~G~I 392 (602)
T PRK13764 321 LLVRPDYTIYDEMRKTED-------FKIFADMRLAGVGMVGVVHATRPIDAIQRFIGRVELG-MIPQIVDTVIFIEDGEV 392 (602)
T ss_pred HhhCCCEEEECCCCCHHH-------HHHHHHHHHcCCeEEEEECCCCHHHHHHHHHhhhhhc-hHHHhhcEEEEEeCCEE
Confidence 677899999999974322 4444455555778999999 665 57789999999999999
Q ss_pred --eeecCh
Q 048028 191 --VYNETP 196 (592)
Q Consensus 191 --v~~g~~ 196 (592)
+|.+..
T Consensus 393 ~~v~~~~~ 400 (602)
T PRK13764 393 SKVYDLEF 400 (602)
T ss_pred EEEEeeee
Confidence 777664
No 496
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=97.75 E-value=1.5e-05 Score=82.16 Aligned_cols=71 Identities=14% Similarity=0.215 Sum_probs=47.6
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEE---CCEecCcccccceeEEEccCCCCCCCCCHHHHHHHHHHcc
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTL---NGEVLESKLLKIISAYVMQDDLLFPMLTVEETLMFAAEFR 73 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i---~g~~~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~ 73 (592)
+||.||||||||||.++|.+++...+.+|+|.+ ||.-.+.. .++..++. |+..+.+.+++.+.+.+-..++
T Consensus 65 IGIaG~~GSGKSTlar~L~~ll~~~~~~g~V~vi~~D~f~~~~~-~l~~~g~~-~~~g~P~s~D~~~l~~~L~~Lk 138 (290)
T TIGR00554 65 ISIAGSVAVGKSTTARILQALLSRWPEHRKVELITTDGFLHPNQ-VLKERNLM-KKKGFPESYDMHRLVKFLSDLK 138 (290)
T ss_pred EEEECCCCCCHHHHHHHHHHHHhhcCCCCceEEEecccccccHH-HHHHcCCc-cccCCChhccHHHHHHHHHHHH
Confidence 589999999999999999998763223477655 44332222 12224443 6666778888888877766554
No 497
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=97.75 E-value=2.4e-05 Score=84.62 Aligned_cols=37 Identities=19% Similarity=0.247 Sum_probs=29.6
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCc
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLES 40 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~ 40 (592)
++|+|||||||||||+ +|+..+.. .|+|.++|+++..
T Consensus 35 v~L~G~SGsGKSTLLr--~~l~~~~s-Gg~I~ldg~~~~~ 71 (504)
T TIGR03238 35 LFLCGSSGDGKSEILA--ENKRKFSE-GYEFFLDATHSFS 71 (504)
T ss_pred EEEECCCCCCHHHHHh--cCCCCCCC-CCEEEECCEECCC
Confidence 5899999999999999 67766432 3489999998753
No 498
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=97.73 E-value=7.1e-05 Score=79.57 Aligned_cols=52 Identities=17% Similarity=0.304 Sum_probs=34.9
Q ss_pred HHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCChhHHHhhhceEEEe
Q 048028 125 HIIHDPILLFLDEPTSGLDSTSAFMVVNVLQRIAKSGSIVIMSIHQPSYRILSLLDRLIIL 185 (592)
Q Consensus 125 ~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~H~~~~~i~~~~D~v~ll 185 (592)
+|=.+|+++++.|-- |..++...+ +.+..|..|+.|.|-.+ +.+..+|++-+
T Consensus 208 aLR~~Pd~i~vGEiR---d~et~~~al----~aa~tGh~v~tTlHa~~--~~~~i~Rl~~~ 259 (358)
T TIGR02524 208 ALRRKPHAILVGEAR---DAETISAAL----EAALTGHPVYTTLHSSG--VAETIRRLVGS 259 (358)
T ss_pred HhccCCCEEeeeeeC---CHHHHHHHH----HHHHcCCcEEEeeccCC--HHHHHHHHHHh
Confidence 444589999999843 555444333 24456888999999875 56667776654
No 499
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=97.72 E-value=2.5e-05 Score=78.01 Aligned_cols=69 Identities=20% Similarity=0.286 Sum_probs=44.5
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeE----EEECCEecCcccccceeEEEccCCCCCCCCCHHHHHHHHHHcc
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGA----VTLNGEVLESKLLKIISAYVMQDDLLFPMLTVEETLMFAAEFR 73 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~----I~i~g~~~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~ 73 (592)
++|.||||||||||.+.|++.+++. .|. |.+++...... ..+..+++++.+ .+...++.+.+.+...++
T Consensus 36 igi~G~~GsGKTTl~~~L~~~l~~~--~g~~~v~i~~D~~~~~~~-~~~~~g~~~~~~-~~~~~d~~~~~~~l~~l~ 108 (229)
T PRK09270 36 VGIAGPPGAGKSTLAEFLEALLQQD--GELPAIQVPMDGFHLDNA-VLDAHGLRPRKG-APETFDVAGLAALLRRLR 108 (229)
T ss_pred EEEECCCCCCHHHHHHHHHHHhhhc--cCCceEEEecccccCCHH-HHHhcccccccC-CCCCCCHHHHHHHHHHHH
Confidence 5899999999999999999998754 376 55555433222 222346666543 335667776666554443
No 500
>PRK11545 gntK gluconate kinase 1; Provisional
Probab=97.71 E-value=9.1e-06 Score=76.79 Aligned_cols=59 Identities=29% Similarity=0.466 Sum_probs=38.5
Q ss_pred ECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCcc--cccceeEEEccCCCCCCCCCHHHHHHH
Q 048028 4 LGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLESK--LLKIISAYVMQDDLLFPMLTVEETLMF 68 (592)
Q Consensus 4 ~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~~--~~~~~~~yv~Q~~~l~~~lTV~E~l~f 68 (592)
||+||||||||++.|++++ |.+.++|...... ..+...|+.+|+....+.+++.++..+
T Consensus 1 ~G~sGsGKSTla~~la~~l------~~~~~~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 61 (163)
T PRK11545 1 MGVSGSGKSAVASEVAHQL------HAAFLDGDFLHPRRNIEKMASGEPLNDDDRKPWLQALNDAAF 61 (163)
T ss_pred CCCCCCcHHHHHHHHHHHh------CCeEEeCccCCchhhhccccCCCCCChhhHHHHHHHHHHHHH
Confidence 7999999999999999985 5577777543211 112234677777554555555555544
Done!