Query 048028
Match_columns 592
No_of_seqs 411 out of 2603
Neff 7.6
Searched_HMMs 29240
Date Mon Mar 25 09:23:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048028.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/048028hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tui_C Methionine import ATP-b 100.0 4.9E-44 1.7E-48 375.2 23.9 189 1-200 57-252 (366)
2 3rlf_A Maltose/maltodextrin im 100.0 8.5E-44 2.9E-48 375.7 24.7 189 1-200 32-222 (381)
3 3tif_A Uncharacterized ABC tra 100.0 1E-43 3.5E-48 354.2 22.6 190 1-199 34-232 (235)
4 3fvq_A Fe(3+) IONS import ATP- 100.0 6.2E-44 2.1E-48 374.3 22.0 189 1-200 33-227 (359)
5 2olj_A Amino acid ABC transpor 100.0 2.2E-43 7.6E-48 357.0 23.8 189 1-200 53-247 (263)
6 1b0u_A Histidine permease; ABC 100.0 1.9E-43 6.7E-48 357.8 23.1 189 1-200 35-241 (262)
7 3gfo_A Cobalt import ATP-bindi 100.0 1.4E-43 4.9E-48 360.6 21.8 189 1-200 37-232 (275)
8 1z47_A CYSA, putative ABC-tran 100.0 3.3E-43 1.1E-47 368.9 24.6 189 1-200 44-234 (355)
9 1vpl_A ABC transporter, ATP-bi 100.0 4.7E-43 1.6E-47 353.4 22.7 190 1-201 44-235 (256)
10 2it1_A 362AA long hypothetical 100.0 5.1E-43 1.7E-47 368.7 23.9 189 1-200 32-222 (362)
11 1g29_1 MALK, maltose transport 100.0 8E-43 2.7E-47 369.0 24.8 189 1-200 32-228 (372)
12 2pcj_A ABC transporter, lipopr 100.0 5.1E-43 1.8E-47 346.7 21.7 184 1-196 33-223 (224)
13 2yyz_A Sugar ABC transporter, 100.0 4.2E-43 1.4E-47 368.9 22.2 189 1-200 32-222 (359)
14 2onk_A Molybdate/tungstate ABC 100.0 2.9E-43 1E-47 351.8 19.9 187 1-200 27-215 (240)
15 1oxx_K GLCV, glucose, ABC tran 100.0 3.8E-43 1.3E-47 369.3 21.3 189 1-200 34-229 (353)
16 1g6h_A High-affinity branched- 100.0 5.5E-43 1.9E-47 353.7 19.3 190 1-198 36-239 (257)
17 1v43_A Sugar-binding transport 100.0 7.9E-43 2.7E-47 368.5 21.1 189 1-200 40-230 (372)
18 4g1u_C Hemin import ATP-bindin 100.0 1.4E-42 4.9E-47 352.0 20.5 186 1-199 40-235 (266)
19 1ji0_A ABC transporter; ATP bi 100.0 1.4E-42 4.8E-47 347.2 19.7 187 1-199 35-226 (240)
20 3d31_A Sulfate/molybdate ABC t 100.0 1.7E-42 5.7E-47 363.2 20.4 186 1-200 29-216 (348)
21 2yz2_A Putative ABC transporte 100.0 5.8E-42 2E-46 347.8 18.9 189 1-201 36-227 (266)
22 2d2e_A SUFC protein; ABC-ATPas 100.0 2.5E-41 8.6E-46 340.1 18.0 190 1-198 32-230 (250)
23 2qi9_C Vitamin B12 import ATP- 100.0 4.4E-41 1.5E-45 337.7 19.3 182 1-199 29-220 (249)
24 2ihy_A ABC transporter, ATP-bi 100.0 1.8E-41 6.3E-46 346.0 15.7 191 1-199 50-250 (279)
25 2zu0_C Probable ATP-dependent 100.0 2.5E-40 8.4E-45 335.9 21.2 196 1-201 49-254 (267)
26 2nq2_C Hypothetical ABC transp 100.0 4E-40 1.4E-44 331.7 21.6 180 1-199 34-215 (253)
27 2ixe_A Antigen peptide transpo 100.0 1.2E-40 4.1E-45 338.8 15.3 186 1-200 48-244 (271)
28 2ff7_A Alpha-hemolysin translo 100.0 2.9E-40 9.8E-45 331.7 17.3 185 1-200 38-231 (247)
29 3nh6_A ATP-binding cassette SU 100.0 4.8E-40 1.6E-44 339.0 18.2 185 1-201 83-277 (306)
30 1mv5_A LMRA, multidrug resista 100.0 5.1E-40 1.8E-44 329.2 16.0 186 1-200 31-225 (243)
31 2pjz_A Hypothetical protein ST 100.0 1.6E-39 5.6E-44 328.7 17.2 179 1-200 33-214 (263)
32 1sgw_A Putative ABC transporte 100.0 7.6E-40 2.6E-44 321.3 14.2 173 1-190 38-210 (214)
33 2ghi_A Transport protein; mult 100.0 7E-39 2.4E-43 324.0 17.6 183 1-200 49-241 (260)
34 2pze_A Cystic fibrosis transme 100.0 9.8E-38 3.3E-42 309.9 16.4 173 1-200 37-217 (229)
35 3gd7_A Fusion complex of cysti 100.0 2.4E-38 8.3E-43 336.2 12.3 183 1-200 50-241 (390)
36 2cbz_A Multidrug resistance-as 100.0 2.3E-37 7.9E-42 308.7 16.0 176 1-200 34-216 (237)
37 2yl4_A ATP-binding cassette SU 100.0 3.4E-37 1.2E-41 346.8 17.1 187 1-200 373-569 (595)
38 3b60_A Lipid A export ATP-bind 100.0 5.7E-37 2E-41 344.1 18.8 186 1-201 372-567 (582)
39 3b5x_A Lipid A export ATP-bind 100.0 5.5E-37 1.9E-41 344.2 18.4 185 1-200 372-566 (582)
40 4a82_A Cystic fibrosis transme 100.0 6.6E-37 2.3E-41 343.2 16.3 185 1-201 370-564 (578)
41 3qf4_A ABC transporter, ATP-bi 100.0 8.6E-37 3E-41 342.6 16.6 185 1-201 372-566 (587)
42 3qf4_B Uncharacterized ABC tra 100.0 1.1E-36 3.6E-41 342.7 14.3 185 1-201 384-578 (598)
43 2bbs_A Cystic fibrosis transme 100.0 9.2E-36 3.2E-40 305.3 15.8 172 1-200 67-246 (290)
44 4f4c_A Multidrug resistance pr 100.0 7.5E-35 2.6E-39 353.0 13.8 187 1-201 1108-1304(1321)
45 4f4c_A Multidrug resistance pr 100.0 4.8E-34 1.6E-38 345.9 16.2 185 1-201 447-641 (1321)
46 3bk7_A ABC transporter ATP-bin 100.0 2E-33 6.8E-38 314.9 18.2 176 1-201 385-563 (607)
47 3g5u_A MCG1178, multidrug resi 100.0 2.5E-33 8.4E-38 338.9 18.2 185 1-201 419-613 (1284)
48 1yqt_A RNAse L inhibitor; ATP- 100.0 2.1E-33 7.3E-38 311.4 16.1 176 1-201 315-493 (538)
49 3g5u_A MCG1178, multidrug resi 100.0 6.1E-33 2.1E-37 335.5 17.4 187 1-201 1062-1258(1284)
50 3ozx_A RNAse L inhibitor; ATP 100.0 1E-32 3.4E-37 305.4 17.6 176 1-199 297-475 (538)
51 3j16_B RLI1P; ribosome recycli 100.0 2.2E-32 7.4E-37 306.1 17.4 176 1-201 381-559 (608)
52 3bk7_A ABC transporter ATP-bin 100.0 7.5E-32 2.6E-36 302.2 10.2 169 1-189 120-305 (607)
53 1yqt_A RNAse L inhibitor; ATP- 100.0 1.1E-31 3.7E-36 297.7 10.1 169 1-189 50-235 (538)
54 3ux8_A Excinuclease ABC, A sub 100.0 4.3E-31 1.5E-35 301.1 14.9 191 1-200 47-297 (670)
55 3ozx_A RNAse L inhibitor; ATP 100.0 3.6E-31 1.2E-35 292.9 9.1 169 1-191 28-216 (538)
56 2iw3_A Elongation factor 3A; a 100.0 1.1E-29 3.9E-34 294.2 17.8 169 1-201 464-635 (986)
57 3ux8_A Excinuclease ABC, A sub 100.0 1.4E-29 4.7E-34 288.7 15.9 126 59-200 504-639 (670)
58 3j16_B RLI1P; ribosome recycli 100.0 9.1E-30 3.1E-34 284.9 11.0 174 1-192 106-301 (608)
59 2iw3_A Elongation factor 3A; a 100.0 3.3E-29 1.1E-33 290.2 11.6 176 1-195 702-981 (986)
60 3pih_A Uvrabc system protein A 99.9 8.9E-27 3E-31 269.7 21.6 127 59-200 766-901 (916)
61 2r6f_A Excinuclease ABC subuni 99.9 2.7E-27 9.1E-32 272.4 14.9 126 59-200 806-941 (972)
62 2vf7_A UVRA2, excinuclease ABC 99.9 5.1E-27 1.8E-31 269.7 16.4 109 84-199 707-825 (842)
63 2ygr_A Uvrabc system protein A 99.9 9.7E-27 3.3E-31 268.6 14.5 125 60-200 825-959 (993)
64 2npi_A Protein CLP1; CLP1-PCF1 99.9 6.5E-29 2.2E-33 269.7 -3.7 173 1-199 141-336 (460)
65 4aby_A DNA repair protein RECN 99.9 3.6E-26 1.2E-30 245.7 16.3 79 112-193 296-380 (415)
66 3qf7_A RAD50; ABC-ATPase, ATPa 99.9 6.3E-24 2.1E-28 224.8 15.2 84 107-192 275-364 (365)
67 1ye8_A Protein THEP1, hypothet 99.9 1.4E-24 4.9E-29 206.8 4.6 144 1-192 3-159 (178)
68 3b85_A Phosphate starvation-in 99.9 1.1E-26 3.8E-31 226.8 -11.0 128 1-172 25-159 (208)
69 1e69_A Chromosome segregation 99.9 1.6E-23 5.4E-28 218.1 11.7 89 108-199 216-311 (322)
70 3sop_A Neuronal-specific septi 99.9 1.3E-24 4.5E-29 220.5 -6.9 147 1-172 5-151 (270)
71 1tq4_A IIGP1, interferon-induc 99.9 2.5E-24 8.4E-29 230.1 -5.8 160 1-188 72-254 (413)
72 4gp7_A Metallophosphoesterase; 99.8 2E-22 7E-27 190.4 1.5 62 111-172 83-160 (171)
73 1znw_A Guanylate kinase, GMP k 99.8 7.5E-25 2.6E-29 213.4 -16.9 167 1-187 23-203 (207)
74 3pih_A Uvrabc system protein A 99.8 5.7E-21 2E-25 221.3 10.9 162 14-200 384-559 (916)
75 3b9q_A Chloroplast SRP recepto 99.8 1.2E-21 4.1E-26 201.8 -1.1 162 1-191 103-285 (302)
76 3qkt_A DNA double-strand break 99.8 1.4E-19 4.8E-24 189.6 12.4 77 108-186 245-327 (339)
77 2v9p_A Replication protein E1; 99.8 1.1E-22 3.9E-27 208.8 -11.3 142 1-206 129-271 (305)
78 2r6f_A Excinuclease ABC subuni 99.8 3.9E-19 1.3E-23 204.8 15.3 135 57-199 449-598 (972)
79 2og2_A Putative signal recogni 99.8 1.1E-20 3.6E-25 198.6 -0.5 161 1-190 160-341 (359)
80 2vf7_A UVRA2, excinuclease ABC 99.8 2.4E-19 8.1E-24 206.2 9.5 110 82-199 355-473 (842)
81 2ygr_A Uvrabc system protein A 99.8 7E-19 2.4E-23 203.4 13.1 134 56-201 465-617 (993)
82 2o5v_A DNA replication and rep 99.8 5.6E-19 1.9E-23 185.7 11.1 86 106-199 259-354 (359)
83 2pt7_A CAG-ALFA; ATPase, prote 99.8 1.4E-19 4.9E-24 188.7 6.3 119 1-191 174-293 (330)
84 3aez_A Pantothenate kinase; tr 99.8 4.3E-21 1.5E-25 198.6 -7.2 154 1-189 93-246 (312)
85 2dpy_A FLII, flagellum-specifi 99.8 1.6E-21 5.5E-26 210.5 -10.8 162 1-199 160-342 (438)
86 1f2t_B RAD50 ABC-ATPase; DNA d 99.8 1.5E-18 5.1E-23 159.9 9.1 82 106-189 52-141 (148)
87 1cr0_A DNA primase/helicase; R 99.7 7.6E-19 2.6E-23 180.2 3.8 169 1-190 38-237 (296)
88 1tf7_A KAIC; homohexamer, hexa 99.7 5E-18 1.7E-22 188.0 9.4 147 1-189 284-444 (525)
89 1z6g_A Guanylate kinase; struc 99.7 6.9E-22 2.3E-26 194.3 -19.3 162 1-183 26-205 (218)
90 2ehv_A Hypothetical protein PH 99.7 1.1E-18 3.6E-23 173.5 -0.2 155 1-186 33-206 (251)
91 4a74_A DNA repair and recombin 99.7 3.2E-18 1.1E-22 167.9 -0.9 145 1-189 28-201 (231)
92 3asz_A Uridine kinase; cytidin 99.7 1E-19 3.5E-24 176.9 -11.9 140 1-172 9-162 (211)
93 3szr_A Interferon-induced GTP- 99.7 3.7E-18 1.3E-22 191.9 -2.1 165 1-201 48-237 (608)
94 1tf7_A KAIC; homohexamer, hexa 99.6 6.8E-19 2.3E-23 195.0 -10.2 153 1-189 42-211 (525)
95 2jeo_A Uridine-cytidine kinase 99.6 1E-17 3.5E-22 167.2 -0.9 161 1-203 28-189 (245)
96 2obl_A ESCN; ATPase, hydrolase 99.6 1.5E-17 5.1E-22 174.4 0.2 163 1-199 74-253 (347)
97 2eyu_A Twitching motility prot 99.6 7.1E-17 2.4E-21 162.8 4.9 120 1-187 28-147 (261)
98 2o8b_B DNA mismatch repair pro 99.6 2E-17 7E-22 194.7 1.0 144 1-198 792-939 (1022)
99 1rj9_A FTSY, signal recognitio 99.6 8.1E-18 2.8E-22 173.3 -2.1 145 1-172 105-259 (304)
100 3thx_A DNA mismatch repair pro 99.6 3.2E-16 1.1E-20 182.5 10.8 88 110-199 720-811 (934)
101 2i3b_A HCR-ntpase, human cance 99.6 2.8E-18 9.4E-23 164.8 -7.0 153 1-193 4-168 (189)
102 2qnr_A Septin-2, protein NEDD5 99.6 4.5E-18 1.5E-22 175.2 -8.1 145 1-172 21-168 (301)
103 1pzn_A RAD51, DNA repair and r 99.6 1.1E-16 3.8E-21 168.1 -0.1 151 1-195 134-309 (349)
104 1ewq_A DNA mismatch repair pro 99.6 2E-16 6.9E-21 181.0 1.8 120 1-179 579-704 (765)
105 3jvv_A Twitching mobility prot 99.6 7.4E-16 2.5E-20 162.0 4.5 121 1-188 126-246 (356)
106 3kta_B Chromosome segregation 99.6 1.3E-14 4.3E-19 137.1 12.6 89 109-200 62-157 (173)
107 1nlf_A Regulatory protein REPA 99.6 3.3E-15 1.1E-19 151.8 8.2 144 1-172 33-182 (279)
108 4ad8_A DNA repair protein RECN 99.6 5.1E-15 1.8E-19 163.5 9.6 78 108-188 393-473 (517)
109 3thx_B DNA mismatch repair pro 99.5 5.7E-15 1.9E-19 171.5 9.3 79 110-191 734-815 (918)
110 2bdt_A BH3686; alpha-beta prot 99.5 5.5E-18 1.9E-22 161.9 -13.7 167 1-200 5-183 (189)
111 1s96_A Guanylate kinase, GMP k 99.5 1.4E-16 4.8E-21 156.4 -4.2 141 1-204 19-163 (219)
112 2w0m_A SSO2452; RECA, SSPF, un 99.5 7.8E-16 2.7E-20 150.7 0.9 78 111-188 103-192 (235)
113 1wb9_A DNA mismatch repair pro 99.5 2.6E-15 8.8E-20 172.8 3.2 141 1-195 610-752 (800)
114 1nij_A Hypothetical protein YJ 99.4 1.2E-17 4.1E-22 173.3 -21.0 161 1-180 7-197 (318)
115 1pui_A ENGB, probable GTP-bind 99.4 2.6E-15 9E-20 144.9 -3.3 74 85-163 127-202 (210)
116 2cvh_A DNA repair and recombin 99.4 1.5E-13 5.3E-18 133.4 9.1 77 112-188 85-185 (220)
117 3auy_A DNA double-strand break 99.4 2.5E-13 8.6E-18 143.7 11.4 77 108-187 277-360 (371)
118 2bbw_A Adenylate kinase 4, AK4 99.4 1.2E-16 4.2E-21 159.3 -13.6 144 1-161 30-200 (246)
119 2f1r_A Molybdopterin-guanine d 99.4 9.7E-16 3.3E-20 144.6 -8.8 137 1-162 5-164 (171)
120 2qag_C Septin-7; cell cycle, c 99.4 1.1E-14 3.8E-19 155.9 -1.7 141 1-172 34-178 (418)
121 1zp6_A Hypothetical protein AT 99.4 6.3E-16 2.2E-20 147.4 -11.1 147 1-169 12-159 (191)
122 1lw7_A Transcriptional regulat 99.4 3.2E-16 1.1E-20 165.6 -15.3 83 112-198 259-352 (365)
123 2rcn_A Probable GTPase ENGC; Y 99.4 1.7E-13 5.8E-18 143.4 5.0 127 1-159 218-346 (358)
124 2ewv_A Twitching motility prot 99.4 1.2E-13 4E-18 146.3 3.4 119 1-186 139-257 (372)
125 1w1w_A Structural maintenance 99.3 1.3E-12 4.4E-17 141.0 9.3 76 110-187 332-411 (430)
126 1n0w_A DNA repair protein RAD5 99.3 2.8E-12 9.7E-17 126.4 8.2 61 128-188 118-209 (243)
127 2gza_A Type IV secretion syste 99.3 3.1E-12 1.1E-16 134.8 8.4 139 1-204 178-319 (361)
128 2kjq_A DNAA-related protein; s 99.3 1.3E-12 4.4E-17 120.3 3.8 45 127-172 81-126 (149)
129 1sxj_E Activator 1 40 kDa subu 99.3 2.5E-12 8.4E-17 134.5 6.2 136 1-173 39-176 (354)
130 1odf_A YGR205W, hypothetical 3 99.3 2.3E-13 7.7E-18 139.2 -3.0 127 1-146 34-169 (290)
131 2yv5_A YJEQ protein; hydrolase 99.2 2.8E-13 9.5E-18 139.4 -2.7 114 1-125 168-301 (302)
132 2qag_B Septin-6, protein NEDD5 99.2 5.1E-13 1.7E-17 142.7 -0.8 154 1-170 45-218 (427)
133 3ec2_A DNA replication protein 99.2 2.2E-12 7.4E-17 121.9 3.2 48 127-174 98-146 (180)
134 3e70_C DPA, signal recognition 99.2 6.2E-13 2.1E-17 138.1 -1.5 138 1-171 132-279 (328)
135 1ni3_A YCHF GTPase, YCHF GTP-b 99.2 3E-14 1E-18 151.1 -14.0 164 1-198 23-210 (392)
136 2yhs_A FTSY, cell division pro 99.1 2.7E-12 9.1E-17 138.9 -3.1 141 1-170 296-448 (503)
137 1udx_A The GTP-binding protein 99.1 3.3E-12 1.1E-16 136.7 -4.3 155 1-183 160-320 (416)
138 1p9r_A General secretion pathw 99.1 6E-13 2E-17 142.6 -10.5 122 1-134 170-314 (418)
139 2qm8_A GTPase/ATPase; G protei 99.1 1.3E-12 4.4E-17 136.4 -8.4 146 1-159 58-260 (337)
140 2oap_1 GSPE-2, type II secreti 99.1 1.1E-12 3.7E-17 144.2 -9.5 162 1-180 263-458 (511)
141 3lda_A DNA repair protein RAD5 99.0 6.6E-10 2.3E-14 118.3 11.4 62 128-189 272-364 (400)
142 3c8u_A Fructokinase; YP_612366 99.0 1.3E-12 4.3E-17 126.8 -9.6 159 1-204 25-184 (208)
143 1in4_A RUVB, holliday junction 99.0 7.2E-12 2.5E-16 130.6 -5.1 151 1-181 54-211 (334)
144 1u0l_A Probable GTPase ENGC; p 99.0 1.4E-11 4.9E-16 126.5 -3.4 94 1-103 172-288 (301)
145 1htw_A HI0065; nucleotide-bind 99.0 4.9E-11 1.7E-15 110.8 0.3 62 1-68 36-97 (158)
146 1lvg_A Guanylate kinase, GMP k 99.0 5.6E-14 1.9E-18 135.6 -21.8 57 122-187 116-173 (198)
147 1t9h_A YLOQ, probable GTPase E 98.9 6.9E-11 2.3E-15 121.4 -0.6 110 1-118 176-302 (307)
148 1oix_A RAS-related protein RAB 98.8 6.8E-10 2.3E-14 105.7 1.8 140 1-157 32-189 (191)
149 2x8a_A Nuclear valosin-contain 98.8 4E-12 1.4E-16 128.9 -16.3 114 1-140 47-164 (274)
150 1vma_A Cell division protein F 98.8 3.6E-09 1.2E-13 108.7 5.2 104 1-159 107-213 (306)
151 2ius_A DNA translocase FTSK; n 98.8 2.1E-10 7E-15 125.3 -4.6 152 1-172 170-343 (512)
152 2dr3_A UPF0273 protein PH0284; 98.8 1.2E-09 4.1E-14 107.5 0.8 60 128-187 127-196 (247)
153 2px0_A Flagellar biosynthesis 98.7 1.1E-08 3.8E-13 104.7 7.4 136 1-193 108-247 (296)
154 2r6a_A DNAB helicase, replicat 98.7 9.2E-09 3.2E-13 111.5 5.8 165 1-190 206-401 (454)
155 2zr9_A Protein RECA, recombina 98.7 2.9E-08 1E-12 103.8 8.5 78 118-195 126-237 (349)
156 1sq5_A Pantothenate kinase; P- 98.7 6.6E-10 2.3E-14 114.4 -4.3 71 1-73 83-156 (308)
157 2f9l_A RAB11B, member RAS onco 98.6 3.4E-08 1.2E-12 94.2 4.6 37 120-158 130-166 (199)
158 1ls1_A Signal recognition part 98.5 1.1E-07 3.8E-12 97.2 8.4 108 1-157 101-209 (295)
159 1iy2_A ATP-dependent metallopr 98.5 1.2E-10 4.2E-15 117.8 -14.5 110 1-132 76-190 (278)
160 2qtf_A Protein HFLX, GTP-bindi 98.5 8.9E-08 3E-12 100.7 6.2 148 1-160 182-354 (364)
161 1ixz_A ATP-dependent metallopr 98.5 1.8E-10 6.1E-15 114.8 -14.2 114 1-138 52-170 (254)
162 3k1j_A LON protease, ATP-depen 98.4 1.4E-08 4.8E-13 114.1 -2.8 143 1-156 63-227 (604)
163 3tr0_A Guanylate kinase, GMP k 98.4 1.8E-08 6.2E-13 96.4 -3.1 60 1-66 10-72 (205)
164 3lnc_A Guanylate kinase, GMP k 98.3 1E-10 3.4E-15 115.1 -20.4 69 127-196 146-219 (231)
165 1qhl_A Protein (cell division 98.3 4.5E-08 1.5E-12 96.1 -1.6 50 2-53 31-91 (227)
166 3hr8_A Protein RECA; alpha and 98.3 2.1E-07 7.4E-12 97.2 3.3 62 1-64 64-126 (356)
167 2ce7_A Cell division protein F 98.3 1E-06 3.5E-11 95.7 8.7 59 114-172 93-165 (476)
168 2xau_A PRE-mRNA-splicing facto 98.2 2E-06 6.8E-11 99.1 7.6 76 109-185 188-265 (773)
169 2e87_A Hypothetical protein PH 98.2 3.6E-06 1.2E-10 88.1 8.8 61 110-172 230-293 (357)
170 2z4s_A Chromosomal replication 98.2 6.4E-07 2.2E-11 96.6 3.0 70 128-197 193-264 (440)
171 1jjv_A Dephospho-COA kinase; P 98.1 2.3E-07 8E-12 89.0 -0.5 126 1-186 5-131 (206)
172 3euj_A Chromosome partition pr 98.1 4.5E-07 1.5E-11 98.3 0.1 37 1-39 32-68 (483)
173 4eun_A Thermoresistant glucoki 98.1 1.1E-07 3.8E-12 91.1 -4.3 51 1-57 32-84 (200)
174 1fnn_A CDC6P, cell division co 97.9 1.5E-05 5E-10 83.4 8.5 44 128-172 124-170 (389)
175 3a00_A Guanylate kinase, GMP k 97.8 2.9E-06 9.8E-11 80.2 0.7 23 1-23 4-26 (186)
176 3b9p_A CG5977-PA, isoform A; A 97.8 0.00011 3.6E-09 74.3 11.5 73 113-185 97-186 (297)
177 1svm_A Large T antigen; AAA+ f 97.8 8.8E-08 3E-12 101.0 -12.1 126 1-140 172-312 (377)
178 4a1f_A DNAB helicase, replicat 97.8 2.8E-05 9.4E-10 80.7 6.8 53 111-168 109-163 (338)
179 3cr8_A Sulfate adenylyltranfer 97.7 8E-07 2.7E-11 98.2 -5.5 36 1-38 372-409 (552)
180 2dhr_A FTSH; AAA+ protein, hex 97.7 1.9E-07 6.6E-12 102.0 -10.6 116 1-140 67-187 (499)
181 2dy1_A Elongation factor G; tr 97.7 1.6E-05 5.5E-10 90.1 3.7 123 1-172 12-137 (665)
182 3tqc_A Pantothenate kinase; bi 97.7 1.3E-06 4.6E-11 90.0 -4.8 23 1-23 95-117 (321)
183 4e22_A Cytidylate kinase; P-lo 97.6 2.9E-06 9.8E-11 84.5 -2.8 52 1-54 30-96 (252)
184 1ega_A Protein (GTP-binding pr 97.6 9E-05 3.1E-09 75.6 7.7 64 112-183 101-170 (301)
185 3t34_A Dynamin-related protein 97.5 0.00031 1.1E-08 73.3 10.9 57 112-169 155-212 (360)
186 2j41_A Guanylate kinase; GMP, 97.5 1.9E-05 6.5E-10 75.1 0.9 24 1-24 9-32 (207)
187 2wjg_A FEOB, ferrous iron tran 97.5 7.2E-05 2.5E-09 69.6 4.9 21 1-21 10-30 (188)
188 2qby_A CDC6 homolog 1, cell di 97.5 1.7E-05 5.8E-10 82.6 -0.1 23 1-23 48-70 (386)
189 3kta_A Chromosome segregation 97.5 2.8E-05 9.5E-10 72.7 1.4 24 1-24 29-52 (182)
190 1knq_A Gluconate kinase; ALFA/ 97.4 4.1E-06 1.4E-10 77.9 -4.5 32 1-38 11-42 (175)
191 1kgd_A CASK, peripheral plasma 97.4 4E-05 1.4E-09 71.9 1.9 32 1-33 8-39 (180)
192 2vp4_A Deoxynucleoside kinase; 97.3 3.3E-05 1.1E-09 75.5 0.5 32 1-38 23-54 (230)
193 3uie_A Adenylyl-sulfate kinase 97.3 1.4E-05 4.9E-10 76.2 -2.1 36 1-39 28-65 (200)
194 1mky_A Probable GTP-binding pr 97.3 0.00018 6.2E-09 77.3 5.4 38 1-38 183-230 (439)
195 2w58_A DNAI, primosome compone 97.3 0.00019 6.5E-09 68.1 4.8 50 128-177 114-165 (202)
196 3lxx_A GTPase IMAP family memb 97.2 0.0023 7.7E-08 62.4 12.3 43 128-170 111-155 (239)
197 3kl4_A SRP54, signal recogniti 97.2 0.00043 1.5E-08 74.1 7.2 33 1-35 100-132 (433)
198 2z43_A DNA repair and recombin 97.2 0.0011 3.9E-08 68.1 10.2 55 117-171 188-258 (324)
199 3cf0_A Transitional endoplasmi 97.2 0.00036 1.2E-08 70.9 6.3 22 1-22 52-73 (301)
200 1zu4_A FTSY; GTPase, signal re 97.2 6.9E-05 2.4E-09 77.2 0.8 64 1-66 108-184 (320)
201 1v5w_A DMC1, meiotic recombina 97.2 0.0019 6.5E-08 66.9 11.8 54 118-171 204-274 (343)
202 1kag_A SKI, shikimate kinase I 97.2 0.00011 3.8E-09 67.7 1.9 23 1-23 7-29 (173)
203 1l8q_A Chromosomal replication 97.2 0.00035 1.2E-08 71.6 5.7 46 127-172 96-142 (324)
204 3tau_A Guanylate kinase, GMP k 97.1 0.00015 5.3E-09 69.5 2.7 24 1-24 11-34 (208)
205 3ney_A 55 kDa erythrocyte memb 97.1 0.00011 3.8E-09 70.2 1.5 23 1-23 22-44 (197)
206 2qt1_A Nicotinamide riboside k 97.1 0.00026 9E-09 67.5 3.9 22 1-22 24-45 (207)
207 1rz3_A Hypothetical protein rb 97.1 6.2E-05 2.1E-09 71.9 -0.6 35 1-37 25-59 (201)
208 3bh0_A DNAB-like replicative h 97.0 0.0011 3.7E-08 68.0 7.9 53 112-169 134-189 (315)
209 4ad8_A DNA repair protein RECN 97.0 8.5E-05 2.9E-09 81.6 -1.1 143 1-164 63-246 (517)
210 3h4m_A Proteasome-activating n 96.9 0.0013 4.5E-08 65.7 7.5 22 1-22 54-75 (285)
211 3bos_A Putative DNA replicatio 96.9 0.00069 2.4E-08 65.3 4.5 45 128-172 103-149 (242)
212 3llm_A ATP-dependent RNA helic 96.8 0.00035 1.2E-08 68.2 2.1 67 113-181 162-229 (235)
213 2wji_A Ferrous iron transport 96.8 0.0011 3.8E-08 60.4 5.2 22 1-22 6-27 (165)
214 2gj8_A MNME, tRNA modification 96.7 0.0011 3.8E-08 61.1 4.7 22 1-22 7-28 (172)
215 3d8b_A Fidgetin-like protein 1 96.7 0.0052 1.8E-07 63.9 10.2 22 1-22 120-141 (357)
216 1ypw_A Transitional endoplasmi 96.7 0.0012 4.2E-08 76.2 5.9 23 1-23 241-263 (806)
217 2www_A Methylmalonic aciduria 96.7 0.00026 9E-09 73.7 0.0 36 1-38 77-112 (349)
218 1f2t_A RAD50 ABC-ATPase; DNA d 96.7 0.00077 2.6E-08 61.2 2.9 18 2-19 27-44 (149)
219 1cke_A CK, MSSA, protein (cyti 96.7 0.00058 2E-08 65.8 2.2 54 1-54 8-74 (227)
220 2q6t_A DNAB replication FORK h 96.6 0.0029 9.9E-08 67.9 7.2 75 111-187 292-397 (444)
221 2v1u_A Cell division control p 96.5 0.0012 4.1E-08 68.5 3.7 22 1-22 47-68 (387)
222 2qz4_A Paraplegin; AAA+, SPG7, 96.5 0.005 1.7E-07 60.4 8.1 21 2-22 43-63 (262)
223 2if2_A Dephospho-COA kinase; a 96.5 0.0008 2.7E-08 63.8 1.9 20 1-20 4-23 (204)
224 2b8t_A Thymidine kinase; deoxy 96.4 0.0026 9E-08 61.8 5.1 53 129-186 89-150 (223)
225 1w1w_A Structural maintenance 96.3 0.0011 3.6E-08 71.0 2.0 24 1-24 29-52 (430)
226 1xwi_A SKD1 protein; VPS4B, AA 96.3 0.026 8.8E-07 57.8 12.0 21 2-22 49-69 (322)
227 2qag_A Septin-2, protein NEDD5 96.2 0.00058 2E-08 71.5 -0.7 23 1-23 40-62 (361)
228 1u94_A RECA protein, recombina 96.2 0.011 3.8E-07 61.6 9.0 76 119-194 129-238 (356)
229 2zej_A Dardarin, leucine-rich 96.2 0.0018 6.1E-08 60.2 2.5 22 1-22 5-26 (184)
230 1np6_A Molybdopterin-guanine d 96.2 0.0018 6.3E-08 60.4 2.5 36 1-36 9-45 (174)
231 3t61_A Gluconokinase; PSI-biol 96.1 0.0019 6.4E-08 61.2 2.2 22 1-22 21-42 (202)
232 2qor_A Guanylate kinase; phosp 96.1 0.0021 7.3E-08 61.1 2.6 23 1-23 15-37 (204)
233 3qks_A DNA double-strand break 96.0 0.0027 9.3E-08 60.6 2.9 18 2-19 27-44 (203)
234 3vaa_A Shikimate kinase, SK; s 96.0 0.0022 7.4E-08 60.8 2.2 22 1-22 28-49 (199)
235 3kb2_A SPBC2 prophage-derived 96.0 0.0027 9.2E-08 57.9 2.5 22 1-22 4-25 (173)
236 3m6a_A ATP-dependent protease 95.9 0.0017 5.8E-08 71.7 1.1 34 1-36 111-144 (543)
237 3n70_A Transport activator; si 95.9 0.014 4.9E-07 52.1 7.0 42 129-172 76-117 (145)
238 1ex7_A Guanylate kinase; subst 95.8 0.0034 1.2E-07 59.2 2.6 22 1-22 4-25 (186)
239 2pez_A Bifunctional 3'-phospho 95.8 0.0032 1.1E-07 58.3 2.2 34 1-37 8-43 (179)
240 2ohf_A Protein OLA1, GTP-bindi 95.8 0.0048 1.7E-07 65.0 3.6 36 1-36 25-69 (396)
241 3nwj_A ATSK2; P loop, shikimat 95.7 0.0033 1.1E-07 62.2 2.2 22 1-22 51-72 (250)
242 1f6b_A SAR1; gtpases, N-termin 95.7 0.0063 2.2E-07 57.3 3.9 21 1-21 28-48 (198)
243 1m2o_B GTP-binding protein SAR 95.6 0.008 2.7E-07 56.1 4.3 21 1-21 26-46 (190)
244 1m7g_A Adenylylsulfate kinase; 95.6 0.0017 5.8E-08 62.1 -0.4 34 1-36 28-63 (211)
245 2p67_A LAO/AO transport system 95.6 0.0022 7.4E-08 66.4 0.2 35 1-37 59-93 (341)
246 2r8r_A Sensor protein; KDPD, P 95.6 0.0075 2.6E-07 58.6 3.9 73 126-205 81-175 (228)
247 3co5_A Putative two-component 95.6 0.015 5.2E-07 51.9 5.8 42 129-171 75-116 (143)
248 3k53_A Ferrous iron transport 95.5 0.0048 1.7E-07 61.4 2.5 47 138-185 144-191 (271)
249 2i1q_A DNA repair and recombin 95.5 0.03 1E-06 57.1 8.5 69 119-187 191-290 (322)
250 3ihw_A Centg3; RAS, centaurin, 95.5 0.011 3.8E-07 54.8 4.7 21 1-21 23-43 (184)
251 1qhx_A CPT, protein (chloramph 95.5 0.0058 2E-07 56.3 2.6 23 1-23 6-28 (178)
252 1via_A Shikimate kinase; struc 95.4 0.0058 2E-07 56.3 2.6 22 1-22 7-28 (175)
253 2jaq_A Deoxyguanosine kinase; 95.4 0.0059 2E-07 57.3 2.6 22 1-22 3-24 (205)
254 2ze6_A Isopentenyl transferase 95.4 0.0053 1.8E-07 60.7 2.2 22 1-22 4-25 (253)
255 3lw7_A Adenylate kinase relate 95.4 0.0061 2.1E-07 55.4 2.4 18 1-18 4-21 (179)
256 3bgw_A DNAB-like replicative h 95.4 0.051 1.8E-06 58.2 9.9 75 111-187 290-394 (444)
257 3vfd_A Spastin; ATPase, microt 95.3 0.068 2.3E-06 56.0 10.7 22 1-22 151-172 (389)
258 3cm0_A Adenylate kinase; ATP-b 95.3 0.0072 2.4E-07 56.0 2.6 21 1-21 7-27 (186)
259 4dcu_A GTP-binding protein ENG 95.3 0.024 8.4E-07 60.8 7.1 53 116-172 89-142 (456)
260 2nzj_A GTP-binding protein REM 95.2 0.0078 2.7E-07 54.6 2.7 22 1-22 7-28 (175)
261 2ged_A SR-beta, signal recogni 95.2 0.0068 2.3E-07 56.3 2.2 22 1-22 51-72 (193)
262 2erx_A GTP-binding protein DI- 95.2 0.0081 2.8E-07 54.1 2.7 21 1-21 6-26 (172)
263 3q72_A GTP-binding protein RAD 95.2 0.0066 2.2E-07 54.6 2.0 23 1-23 5-27 (166)
264 1z2a_A RAS-related protein RAB 95.2 0.0071 2.4E-07 54.3 2.2 22 1-22 8-29 (168)
265 3r20_A Cytidylate kinase; stru 95.2 0.0079 2.7E-07 58.8 2.6 22 1-22 12-33 (233)
266 1kht_A Adenylate kinase; phosp 95.2 0.0081 2.8E-07 55.7 2.6 22 1-22 6-27 (192)
267 1ly1_A Polynucleotide kinase; 95.2 0.0082 2.8E-07 55.1 2.6 20 1-20 5-24 (181)
268 2qp9_X Vacuolar protein sortin 95.1 0.049 1.7E-06 56.4 8.8 22 1-22 87-108 (355)
269 2p5t_B PEZT; postsegregational 95.1 0.0053 1.8E-07 60.5 1.2 33 1-37 35-67 (253)
270 2yvu_A Probable adenylyl-sulfa 95.1 0.0076 2.6E-07 56.1 2.2 23 1-23 16-38 (186)
271 1lv7_A FTSH; alpha/beta domain 95.1 0.0073 2.5E-07 59.3 2.2 23 1-23 48-70 (257)
272 1vht_A Dephospho-COA kinase; s 95.1 0.0085 2.9E-07 57.3 2.6 20 1-20 7-26 (218)
273 3q85_A GTP-binding protein REM 95.1 0.0091 3.1E-07 53.9 2.6 22 1-22 5-26 (169)
274 1kao_A RAP2A; GTP-binding prot 95.1 0.008 2.7E-07 53.8 2.2 22 1-22 6-27 (167)
275 2dyk_A GTP-binding protein; GT 95.1 0.0083 2.8E-07 53.6 2.2 22 1-22 4-25 (161)
276 3tw8_B RAS-related protein RAB 95.1 0.0086 2.9E-07 54.5 2.4 22 1-22 12-33 (181)
277 1gtv_A TMK, thymidylate kinase 95.0 0.0042 1.4E-07 59.0 0.2 23 1-23 3-25 (214)
278 3b1v_A Ferrous iron uptake tra 95.0 0.0091 3.1E-07 59.8 2.7 22 1-22 6-27 (272)
279 1u8z_A RAS-related protein RAL 95.0 0.0084 2.9E-07 53.7 2.2 22 1-22 7-28 (168)
280 4b4t_I 26S protease regulatory 95.0 0.085 2.9E-06 55.9 10.1 65 127-197 273-354 (437)
281 2ce2_X GTPase HRAS; signaling 95.0 0.0079 2.7E-07 53.7 1.9 22 1-22 6-27 (166)
282 1fzq_A ADP-ribosylation factor 95.0 0.0081 2.8E-07 55.5 2.0 21 1-21 19-39 (181)
283 1xjc_A MOBB protein homolog; s 95.0 0.0089 3.1E-07 55.4 2.2 23 1-23 7-29 (169)
284 1z0j_A RAB-22, RAS-related pro 95.0 0.009 3.1E-07 53.8 2.2 22 1-22 9-30 (170)
285 2lkc_A Translation initiation 95.0 0.01 3.6E-07 54.0 2.7 22 1-22 11-32 (178)
286 1nks_A Adenylate kinase; therm 95.0 0.009 3.1E-07 55.4 2.3 22 1-22 4-25 (194)
287 3lxw_A GTPase IMAP family memb 95.0 0.0099 3.4E-07 58.4 2.6 23 1-23 24-46 (247)
288 3iij_A Coilin-interacting nucl 95.0 0.0099 3.4E-07 54.9 2.5 21 1-21 14-34 (180)
289 1z08_A RAS-related protein RAB 95.0 0.0091 3.1E-07 53.8 2.2 22 1-22 9-30 (170)
290 3cmw_A Protein RECA, recombina 94.9 0.061 2.1E-06 66.2 9.9 72 118-189 797-902 (1706)
291 1ek0_A Protein (GTP-binding pr 94.9 0.0093 3.2E-07 53.6 2.2 22 1-22 6-27 (170)
292 3trf_A Shikimate kinase, SK; a 94.9 0.01 3.6E-07 54.9 2.5 22 1-22 8-29 (185)
293 1c1y_A RAS-related protein RAP 94.9 0.0094 3.2E-07 53.5 2.2 22 1-22 6-27 (167)
294 1wms_A RAB-9, RAB9, RAS-relate 94.9 0.0096 3.3E-07 54.2 2.2 22 1-22 10-31 (177)
295 1svi_A GTP-binding protein YSX 94.9 0.0092 3.2E-07 55.4 2.1 22 1-22 26-47 (195)
296 1g16_A RAS-related protein SEC 94.9 0.0087 3E-07 53.9 1.9 22 1-22 6-27 (170)
297 1ky3_A GTP-binding protein YPT 94.9 0.0099 3.4E-07 54.1 2.2 22 1-22 11-32 (182)
298 1uf9_A TT1252 protein; P-loop, 94.8 0.0096 3.3E-07 55.9 2.0 21 1-21 11-31 (203)
299 3pqc_A Probable GTP-binding pr 94.8 0.01 3.5E-07 54.9 2.1 22 1-22 26-47 (195)
300 1y63_A LMAJ004144AAA protein; 94.8 0.012 3.9E-07 55.0 2.5 21 1-21 13-33 (184)
301 2cxx_A Probable GTP-binding pr 94.8 0.01 3.6E-07 54.6 2.2 22 1-22 4-25 (190)
302 2rhm_A Putative kinase; P-loop 94.8 0.011 3.7E-07 55.0 2.2 21 1-21 8-28 (193)
303 2fn4_A P23, RAS-related protei 94.7 0.01 3.4E-07 54.1 1.9 22 1-22 12-33 (181)
304 2hxs_A RAB-26, RAS-related pro 94.7 0.013 4.3E-07 53.4 2.6 22 1-22 9-30 (178)
305 1r2q_A RAS-related protein RAB 94.7 0.011 3.9E-07 53.0 2.2 21 1-21 9-29 (170)
306 4dsu_A GTPase KRAS, isoform 2B 94.7 0.011 3.9E-07 54.2 2.2 22 1-22 7-28 (189)
307 1jal_A YCHF protein; nucleotid 94.7 0.017 5.7E-07 60.3 3.7 35 1-35 5-48 (363)
308 1q3t_A Cytidylate kinase; nucl 94.7 0.011 3.8E-07 57.4 2.2 21 1-21 19-39 (236)
309 3clv_A RAB5 protein, putative; 94.7 0.012 4E-07 54.6 2.2 22 1-22 10-31 (208)
310 1upt_A ARL1, ADP-ribosylation 94.7 0.012 4E-07 53.1 2.2 21 1-21 10-30 (171)
311 4eaq_A DTMP kinase, thymidylat 94.6 0.013 4.5E-07 56.9 2.6 24 1-24 29-52 (229)
312 2oil_A CATX-8, RAS-related pro 94.6 0.012 4.2E-07 54.6 2.2 22 1-22 28-49 (193)
313 1r8s_A ADP-ribosylation factor 94.6 0.012 4.2E-07 52.6 2.2 21 1-21 3-23 (164)
314 3bc1_A RAS-related protein RAB 94.6 0.012 4.2E-07 54.1 2.2 22 1-22 14-35 (195)
315 1moz_A ARL1, ADP-ribosylation 94.6 0.0085 2.9E-07 54.9 1.0 20 1-20 21-40 (183)
316 3fb4_A Adenylate kinase; psych 94.6 0.014 4.7E-07 55.6 2.5 21 1-21 3-23 (216)
317 2z0h_A DTMP kinase, thymidylat 94.6 0.014 4.8E-07 54.4 2.5 22 1-22 3-24 (197)
318 1wf3_A GTP-binding protein; GT 94.5 0.014 4.9E-07 59.2 2.6 22 1-22 10-31 (301)
319 3auy_A DNA double-strand break 94.5 0.014 4.9E-07 60.9 2.6 18 2-19 29-46 (371)
320 3t1o_A Gliding protein MGLA; G 94.5 0.015 5.2E-07 53.7 2.5 23 1-23 17-39 (198)
321 3t5d_A Septin-7; GTP-binding p 94.5 0.013 4.4E-07 58.5 2.1 22 1-22 11-32 (274)
322 2g6b_A RAS-related protein RAB 94.5 0.014 4.7E-07 53.2 2.2 22 1-22 13-34 (180)
323 2y8e_A RAB-protein 6, GH09086P 94.5 0.013 4.3E-07 53.3 1.9 21 1-21 17-37 (179)
324 2a9k_A RAS-related protein RAL 94.5 0.014 4.8E-07 53.4 2.2 22 1-22 21-42 (187)
325 2plr_A DTMP kinase, probable t 94.4 0.016 5.4E-07 54.7 2.6 23 1-23 7-29 (213)
326 3dl0_A Adenylate kinase; phosp 94.4 0.015 5.3E-07 55.3 2.5 22 1-22 3-24 (216)
327 1z0f_A RAB14, member RAS oncog 94.4 0.014 4.9E-07 52.9 2.2 22 1-22 18-39 (179)
328 3iby_A Ferrous iron transport 94.4 0.014 4.9E-07 57.7 2.3 22 1-22 4-25 (256)
329 2v54_A DTMP kinase, thymidylat 94.4 0.016 5.5E-07 54.4 2.6 22 1-22 7-28 (204)
330 3ake_A Cytidylate kinase; CMP 94.4 0.014 4.8E-07 54.9 2.2 22 1-22 5-26 (208)
331 2efe_B Small GTP-binding prote 94.4 0.015 5.1E-07 53.0 2.2 22 1-22 15-36 (181)
332 1e6c_A Shikimate kinase; phosp 94.4 0.017 5.8E-07 52.7 2.6 21 1-21 5-25 (173)
333 1ksh_A ARF-like protein 2; sma 94.4 0.016 5.5E-07 53.3 2.5 22 1-22 21-42 (186)
334 4ag6_A VIRB4 ATPase, type IV s 94.4 0.011 3.8E-07 62.1 1.5 45 129-173 262-309 (392)
335 3con_A GTPase NRAS; structural 94.4 0.015 5E-07 53.8 2.2 22 1-22 24-45 (190)
336 3cbq_A GTP-binding protein REM 94.4 0.013 4.5E-07 54.9 1.8 21 1-21 26-46 (195)
337 1nrj_B SR-beta, signal recogni 94.3 0.016 5.3E-07 55.0 2.2 22 1-22 15-36 (218)
338 2xtp_A GTPase IMAP family memb 94.3 0.016 5.6E-07 56.9 2.4 22 1-22 25-46 (260)
339 1gvn_B Zeta; postsegregational 94.3 0.016 5.3E-07 58.5 2.2 31 1-35 36-66 (287)
340 1vg8_A RAS-related protein RAB 94.3 0.016 5.5E-07 54.2 2.2 22 1-22 11-32 (207)
341 2bov_A RAla, RAS-related prote 94.3 0.016 5.5E-07 54.1 2.2 22 1-22 17-38 (206)
342 1tev_A UMP-CMP kinase; ploop, 94.3 0.018 6.3E-07 53.3 2.6 21 1-21 6-26 (196)
343 2bme_A RAB4A, RAS-related prot 94.3 0.015 5.1E-07 53.4 1.9 22 1-22 13-34 (186)
344 2gf9_A RAS-related protein RAB 94.3 0.016 5.6E-07 53.6 2.2 22 1-22 25-46 (189)
345 3iev_A GTP-binding protein ERA 94.3 0.018 6.1E-07 58.6 2.6 22 1-22 13-34 (308)
346 3bwd_D RAC-like GTP-binding pr 94.2 0.019 6.6E-07 52.3 2.6 22 1-22 11-32 (182)
347 2dby_A GTP-binding protein; GD 94.2 0.016 5.3E-07 60.7 2.2 21 1-21 4-24 (368)
348 2c95_A Adenylate kinase 1; tra 94.2 0.017 5.9E-07 53.8 2.3 21 1-21 12-32 (196)
349 2pbr_A DTMP kinase, thymidylat 94.2 0.019 6.4E-07 53.3 2.5 22 1-22 3-24 (195)
350 2pt5_A Shikimate kinase, SK; a 94.2 0.02 6.7E-07 52.1 2.6 21 1-21 3-23 (168)
351 3tkl_A RAS-related protein RAB 94.2 0.017 5.8E-07 53.5 2.2 22 1-22 19-40 (196)
352 3a1s_A Iron(II) transport prot 94.2 0.019 6.6E-07 56.8 2.7 22 1-22 8-29 (258)
353 1zbd_A Rabphilin-3A; G protein 94.2 0.02 6.8E-07 53.6 2.6 22 1-22 11-32 (203)
354 2gf0_A GTP-binding protein DI- 94.2 0.016 5.4E-07 53.8 1.9 21 1-21 11-31 (199)
355 3llu_A RAS-related GTP-binding 94.2 0.018 6.2E-07 53.8 2.3 23 1-23 23-45 (196)
356 2ffh_A Protein (FFH); SRP54, s 94.2 0.011 3.8E-07 62.9 0.9 37 1-39 101-137 (425)
357 2il1_A RAB12; G-protein, GDP, 94.2 0.018 6.2E-07 53.6 2.3 22 1-22 29-50 (192)
358 1jwy_B Dynamin A GTPase domain 94.1 0.018 6.2E-07 58.2 2.4 22 1-22 27-48 (315)
359 2fg5_A RAB-22B, RAS-related pr 94.1 0.016 5.6E-07 53.9 1.9 22 1-22 26-47 (192)
360 1m7b_A RND3/RHOE small GTP-bin 94.1 0.016 5.5E-07 53.4 1.9 22 1-22 10-31 (184)
361 3kkq_A RAS-related protein M-R 94.1 0.018 6.1E-07 52.8 2.2 22 1-22 21-42 (183)
362 2bwj_A Adenylate kinase 5; pho 94.1 0.019 6.3E-07 53.7 2.3 22 1-22 15-36 (199)
363 2wwf_A Thymidilate kinase, put 94.1 0.018 6.2E-07 54.4 2.2 22 1-22 13-34 (212)
364 1mh1_A RAC1; GTP-binding, GTPa 94.1 0.018 6.3E-07 52.6 2.2 21 1-21 8-28 (186)
365 2cjw_A GTP-binding protein GEM 94.1 0.018 6.2E-07 53.8 2.2 21 1-21 9-29 (192)
366 3i8s_A Ferrous iron transport 94.1 0.019 6.5E-07 57.3 2.4 22 1-22 6-27 (274)
367 1q57_A DNA primase/helicase; d 94.1 0.54 1.8E-05 50.9 14.1 68 119-187 342-441 (503)
368 1z06_A RAS-related protein RAB 94.0 0.019 6.6E-07 53.1 2.2 21 1-21 23-43 (189)
369 4dhe_A Probable GTP-binding pr 94.0 0.011 3.9E-07 56.2 0.5 22 1-22 32-53 (223)
370 2qu8_A Putative nucleolar GTP- 94.0 0.021 7.2E-07 54.8 2.5 21 1-21 32-52 (228)
371 1zj6_A ADP-ribosylation factor 94.0 0.021 7.1E-07 52.7 2.3 21 1-21 19-39 (187)
372 1zak_A Adenylate kinase; ATP:A 94.0 0.02 6.8E-07 54.9 2.2 22 1-22 8-29 (222)
373 2iyv_A Shikimate kinase, SK; t 94.0 0.022 7.6E-07 52.6 2.5 22 1-22 5-26 (184)
374 2h57_A ADP-ribosylation factor 94.0 0.016 5.6E-07 53.6 1.6 22 1-22 24-45 (190)
375 2o52_A RAS-related protein RAB 94.0 0.021 7.2E-07 53.6 2.3 22 1-22 28-49 (200)
376 2f7s_A C25KG, RAS-related prot 94.0 0.035 1.2E-06 52.5 4.0 22 1-22 28-49 (217)
377 4bas_A ADP-ribosylation factor 94.0 0.021 7.3E-07 52.9 2.4 22 1-22 20-41 (199)
378 3oes_A GTPase rhebl1; small GT 94.0 0.018 6.2E-07 53.9 1.9 22 1-22 27-48 (201)
379 3io5_A Recombination and repai 93.9 0.041 1.4E-06 56.2 4.5 57 115-171 93-172 (333)
380 2a5j_A RAS-related protein RAB 93.9 0.021 7.1E-07 53.0 2.2 22 1-22 24-45 (191)
381 3t5g_A GTP-binding protein RHE 93.9 0.019 6.6E-07 52.5 1.9 21 1-21 9-29 (181)
382 1zd9_A ADP-ribosylation factor 93.9 0.021 7.2E-07 52.9 2.2 21 1-21 25-45 (188)
383 3dz8_A RAS-related protein RAB 93.9 0.019 6.6E-07 53.2 1.9 22 1-22 26-47 (191)
384 1j8m_F SRP54, signal recogniti 93.9 0.0083 2.8E-07 60.9 -0.7 36 1-38 101-136 (297)
385 2h17_A ADP-ribosylation factor 93.9 0.02 6.7E-07 52.7 1.9 21 1-21 24-44 (181)
386 1zd8_A GTP:AMP phosphotransfer 93.9 0.022 7.5E-07 54.9 2.3 22 1-22 10-31 (227)
387 2bcg_Y Protein YP2, GTP-bindin 93.9 0.019 6.7E-07 53.8 1.9 22 1-22 11-32 (206)
388 2vhj_A Ntpase P4, P4; non- hyd 93.9 0.068 2.3E-06 54.6 6.0 19 2-20 127-145 (331)
389 2atv_A RERG, RAS-like estrogen 93.9 0.022 7.5E-07 53.1 2.2 22 1-22 31-52 (196)
390 1x3s_A RAS-related protein RAB 93.9 0.022 7.4E-07 52.6 2.2 22 1-22 18-39 (195)
391 3reg_A RHO-like small GTPase; 93.8 0.022 7.6E-07 52.9 2.2 22 1-22 26-47 (194)
392 3cph_A RAS-related protein SEC 93.8 0.022 7.6E-07 53.5 2.2 22 1-22 23-44 (213)
393 2p5s_A RAS and EF-hand domain 93.8 0.022 7.7E-07 53.2 2.2 22 1-22 31-52 (199)
394 1ukz_A Uridylate kinase; trans 93.8 0.025 8.5E-07 53.2 2.5 21 1-21 18-38 (203)
395 2aka_B Dynamin-1; fusion prote 93.8 0.022 7.4E-07 57.0 2.1 22 1-22 29-50 (299)
396 1qf9_A UMP/CMP kinase, protein 93.8 0.024 8.1E-07 52.5 2.2 21 1-21 9-29 (194)
397 2ew1_A RAS-related protein RAB 93.7 0.021 7.2E-07 53.9 1.9 22 1-22 29-50 (201)
398 1nn5_A Similar to deoxythymidy 93.7 0.024 8.1E-07 53.6 2.2 22 1-22 12-33 (215)
399 2cdn_A Adenylate kinase; phosp 93.7 0.027 9.3E-07 53.0 2.6 21 1-21 23-43 (201)
400 2q3h_A RAS homolog gene family 93.7 0.028 9.6E-07 52.4 2.6 22 1-22 23-44 (201)
401 2fv8_A H6, RHO-related GTP-bin 93.7 0.026 9E-07 53.2 2.4 22 1-22 28-49 (207)
402 2iwr_A Centaurin gamma 1; ANK 93.7 0.019 6.5E-07 52.3 1.4 21 1-21 10-30 (178)
403 1sxj_C Activator 1 40 kDa subu 93.6 0.023 7.9E-07 58.3 2.1 22 2-23 50-71 (340)
404 2j1l_A RHO-related GTP-binding 93.6 0.027 9.3E-07 53.5 2.4 21 1-21 37-57 (214)
405 3c5c_A RAS-like protein 12; GD 93.6 0.026 8.9E-07 52.3 2.2 22 1-22 24-45 (187)
406 2wsm_A Hydrogenase expression/ 93.6 0.024 8.1E-07 53.9 1.9 22 1-22 33-54 (221)
407 2b6h_A ADP-ribosylation factor 93.5 0.025 8.6E-07 52.7 2.0 21 1-21 32-52 (192)
408 2vli_A Antibiotic resistance p 93.5 0.02 6.9E-07 52.7 1.3 22 1-22 8-29 (183)
409 2j9r_A Thymidine kinase; TK1, 93.5 0.16 5.6E-06 48.6 7.7 53 129-186 101-162 (214)
410 2ga8_A Hypothetical 39.9 kDa p 93.5 0.026 8.9E-07 58.5 2.2 23 1-23 27-49 (359)
411 2xb4_A Adenylate kinase; ATP-b 93.5 0.03 1E-06 53.9 2.6 21 1-21 3-23 (223)
412 2fu5_C RAS-related protein RAB 93.5 0.019 6.3E-07 52.7 1.0 21 1-21 11-31 (183)
413 2fh5_B SR-beta, signal recogni 93.5 0.027 9.3E-07 53.2 2.2 22 1-22 10-31 (214)
414 1aky_A Adenylate kinase; ATP:A 93.5 0.031 1.1E-06 53.4 2.6 22 1-22 7-28 (220)
415 1gwn_A RHO-related GTP-binding 93.5 0.025 8.5E-07 53.6 1.9 22 1-22 31-52 (205)
416 1uj2_A Uridine-cytidine kinase 93.5 0.03 1E-06 54.9 2.5 22 1-22 25-46 (252)
417 1e4v_A Adenylate kinase; trans 93.5 0.028 9.6E-07 53.5 2.2 21 1-21 3-23 (214)
418 1zuh_A Shikimate kinase; alpha 93.4 0.033 1.1E-06 50.7 2.6 22 1-22 10-31 (168)
419 2grj_A Dephospho-COA kinase; T 93.4 0.032 1.1E-06 52.8 2.5 21 1-21 15-35 (192)
420 3def_A T7I23.11 protein; chlor 93.4 0.029 1E-06 55.4 2.4 22 1-22 39-60 (262)
421 2g3y_A GTP-binding protein GEM 93.4 0.034 1.2E-06 53.2 2.7 21 1-21 40-60 (211)
422 3tlx_A Adenylate kinase 2; str 93.4 0.033 1.1E-06 54.5 2.6 21 1-21 32-52 (243)
423 1jbk_A CLPB protein; beta barr 93.3 0.034 1.2E-06 50.7 2.6 22 1-22 46-67 (195)
424 2gco_A H9, RHO-related GTP-bin 93.3 0.027 9.3E-07 52.8 1.9 22 1-22 28-49 (201)
425 1h65_A Chloroplast outer envel 93.2 0.032 1.1E-06 55.3 2.3 22 1-22 42-63 (270)
426 2f6r_A COA synthase, bifunctio 93.1 0.034 1.2E-06 55.7 2.3 20 1-20 78-97 (281)
427 2atx_A Small GTP binding prote 93.1 0.032 1.1E-06 51.7 1.9 22 1-22 21-42 (194)
428 4djt_A GTP-binding nuclear pro 93.1 0.018 6.1E-07 54.6 0.1 22 1-22 14-35 (218)
429 2x77_A ADP-ribosylation factor 92.9 0.026 8.7E-07 52.1 1.0 21 1-21 25-45 (189)
430 3a4m_A L-seryl-tRNA(SEC) kinas 92.9 0.041 1.4E-06 54.3 2.6 21 1-21 7-27 (260)
431 1xp8_A RECA protein, recombina 92.9 0.15 5.1E-06 53.1 6.9 72 118-189 139-244 (366)
432 3cnl_A YLQF, putative uncharac 92.9 0.04 1.4E-06 54.7 2.5 23 1-23 102-124 (262)
433 3cpj_B GTP-binding protein YPT 92.9 0.038 1.3E-06 52.7 2.2 22 1-22 16-37 (223)
434 2hup_A RAS-related protein RAB 92.8 0.036 1.2E-06 52.0 1.9 22 1-22 32-53 (201)
435 2yc2_C IFT27, small RAB-relate 92.8 0.019 6.6E-07 53.6 -0.1 21 1-21 23-43 (208)
436 1ltq_A Polynucleotide kinase; 92.8 0.044 1.5E-06 54.9 2.6 21 1-21 5-25 (301)
437 3cmu_A Protein RECA, recombina 92.7 0.21 7.3E-06 62.3 8.9 72 119-190 449-554 (2050)
438 1a7j_A Phosphoribulokinase; tr 92.6 0.024 8.3E-07 57.2 0.4 21 1-21 8-28 (290)
439 3be4_A Adenylate kinase; malar 92.6 0.045 1.5E-06 52.3 2.3 22 1-22 8-29 (217)
440 2p65_A Hypothetical protein PF 92.6 0.039 1.3E-06 50.3 1.8 22 2-23 47-68 (187)
441 4fcw_A Chaperone protein CLPB; 92.5 0.044 1.5E-06 55.0 2.2 23 1-23 50-72 (311)
442 4gzl_A RAS-related C3 botulinu 92.5 0.042 1.4E-06 51.7 1.9 21 1-21 33-53 (204)
443 2qmh_A HPR kinase/phosphorylas 92.5 0.052 1.8E-06 51.6 2.5 21 1-21 37-57 (205)
444 2hf9_A Probable hydrogenase ni 92.5 0.042 1.4E-06 52.4 1.9 21 1-21 41-61 (226)
445 3a8t_A Adenylate isopentenyltr 92.5 0.077 2.6E-06 54.6 3.9 23 1-23 43-65 (339)
446 1qvr_A CLPB protein; coiled co 92.4 0.095 3.2E-06 60.9 5.1 116 1-177 591-717 (854)
447 3q3j_B RHO-related GTP-binding 92.4 0.047 1.6E-06 51.9 2.2 21 1-21 30-50 (214)
448 3euj_A Chromosome partition pr 92.4 0.16 5.3E-06 54.9 6.4 71 109-186 377-464 (483)
449 2j0v_A RAC-like GTP-binding pr 92.4 0.044 1.5E-06 51.6 1.9 22 1-22 12-33 (212)
450 1njg_A DNA polymerase III subu 92.4 0.055 1.9E-06 51.2 2.5 42 129-172 126-167 (250)
451 4a9a_A Ribosome-interacting GT 92.3 0.076 2.6E-06 55.6 3.7 38 1-38 75-121 (376)
452 3d3q_A TRNA delta(2)-isopenten 92.3 0.054 1.8E-06 55.8 2.5 22 1-22 10-31 (340)
453 3exa_A TRNA delta(2)-isopenten 92.2 0.076 2.6E-06 54.1 3.5 22 1-22 6-27 (322)
454 1ak2_A Adenylate kinase isoenz 92.2 0.059 2E-06 52.1 2.6 22 1-22 19-40 (233)
455 2r62_A Cell division protease 92.2 0.042 1.4E-06 54.0 1.5 22 1-22 47-68 (268)
456 3sr0_A Adenylate kinase; phosp 92.1 0.061 2.1E-06 51.4 2.5 21 1-21 3-23 (206)
457 3crm_A TRNA delta(2)-isopenten 92.0 0.062 2.1E-06 55.0 2.6 22 1-22 8-29 (323)
458 1mky_A Probable GTP-binding pr 91.8 0.12 4.2E-06 55.1 4.7 22 1-22 4-25 (439)
459 3th5_A RAS-related C3 botulinu 91.1 0.031 1.1E-06 52.4 0.0 21 1-21 33-53 (204)
460 1puj_A YLQF, conserved hypothe 91.8 0.066 2.2E-06 53.7 2.4 22 1-22 123-144 (282)
461 1wxq_A GTP-binding protein; st 91.7 0.065 2.2E-06 56.5 2.4 42 85-135 180-221 (397)
462 3pxi_A Negative regulator of g 91.7 0.22 7.6E-06 56.9 7.0 21 2-22 525-545 (758)
463 2h92_A Cytidylate kinase; ross 91.7 0.075 2.5E-06 50.5 2.6 22 1-22 6-27 (219)
464 3umf_A Adenylate kinase; rossm 91.7 0.074 2.5E-06 51.3 2.5 20 2-21 33-52 (217)
465 2x2e_A Dynamin-1; nitration, h 91.7 0.048 1.7E-06 56.4 1.3 22 1-22 34-55 (353)
466 3gmt_A Adenylate kinase; ssgci 91.6 0.076 2.6E-06 51.7 2.6 22 1-22 11-32 (230)
467 3r7w_A Gtpase1, GTP-binding pr 91.6 0.078 2.7E-06 53.7 2.7 21 1-21 6-26 (307)
468 3ice_A Transcription terminati 91.5 0.067 2.3E-06 56.0 2.2 22 1-22 177-198 (422)
469 3cmw_A Protein RECA, recombina 91.5 0.39 1.3E-05 59.2 9.1 69 121-189 451-553 (1706)
470 3tqf_A HPR(Ser) kinase; transf 91.3 0.072 2.5E-06 49.5 1.9 21 1-21 19-39 (181)
471 2chg_A Replication factor C sm 91.3 0.084 2.9E-06 49.3 2.5 42 129-172 102-143 (226)
472 2hjg_A GTP-binding protein ENG 91.3 0.066 2.3E-06 57.1 1.9 21 1-21 6-26 (436)
473 3geh_A MNME, tRNA modification 91.2 0.067 2.3E-06 57.6 1.9 21 1-21 227-247 (462)
474 1sxj_D Activator 1 41 kDa subu 91.2 0.074 2.5E-06 54.3 2.2 43 129-173 133-175 (353)
475 1ko7_A HPR kinase/phosphatase; 91.0 0.078 2.7E-06 54.0 2.0 21 1-21 147-167 (314)
476 3l0i_B RAS-related protein RAB 91.0 0.021 7.2E-07 53.4 -2.1 22 1-22 36-57 (199)
477 3foz_A TRNA delta(2)-isopenten 90.9 0.095 3.2E-06 53.3 2.6 22 1-22 13-34 (316)
478 3zvl_A Bifunctional polynucleo 90.8 0.092 3.1E-06 55.7 2.4 21 1-21 261-281 (416)
479 3p32_A Probable GTPase RV1496/ 90.8 0.088 3E-06 54.5 2.2 22 1-22 82-103 (355)
480 3gj0_A GTP-binding nuclear pro 90.7 0.061 2.1E-06 51.1 0.9 21 1-21 18-39 (221)
481 4edh_A DTMP kinase, thymidylat 90.6 0.11 3.6E-06 49.9 2.5 23 1-23 9-31 (213)
482 1f5n_A Interferon-induced guan 90.6 0.087 3E-06 58.3 2.1 22 1-22 41-62 (592)
483 1xzp_A Probable tRNA modificat 90.3 0.062 2.1E-06 58.2 0.5 22 1-22 246-267 (482)
484 1lnz_A SPO0B-associated GTP-bi 90.2 0.078 2.7E-06 54.7 1.3 21 1-21 161-181 (342)
485 1d2n_A N-ethylmaleimide-sensit 90.2 0.12 4.1E-06 51.0 2.5 20 2-21 68-87 (272)
486 3gee_A MNME, tRNA modification 90.2 0.084 2.9E-06 57.0 1.5 22 1-22 236-257 (476)
487 2j69_A Bacterial dynamin-like 90.1 0.12 4.1E-06 58.6 2.8 22 1-22 72-93 (695)
488 2ocp_A DGK, deoxyguanosine kin 90.1 0.12 4E-06 50.2 2.3 23 1-23 5-27 (241)
489 2qpt_A EH domain-containing pr 90.0 0.1 3.6E-06 57.4 2.1 22 1-22 68-89 (550)
490 3sjy_A Translation initiation 90.0 0.13 4.4E-06 54.2 2.6 23 1-23 11-33 (403)
491 3lv8_A DTMP kinase, thymidylat 89.9 0.12 4.2E-06 50.4 2.2 23 1-23 30-52 (236)
492 3v9p_A DTMP kinase, thymidylat 89.8 0.1 3.6E-06 50.5 1.7 23 1-23 28-50 (227)
493 1g5t_A COB(I)alamin adenosyltr 89.7 0.21 7.3E-06 47.2 3.7 72 117-189 106-181 (196)
494 3eph_A TRNA isopentenyltransfe 89.7 0.12 4.2E-06 54.3 2.2 22 1-22 5-26 (409)
495 3t15_A Ribulose bisphosphate c 89.7 0.13 4.4E-06 51.7 2.3 21 2-22 40-60 (293)
496 1lw7_A Transcriptional regulat 89.7 0.18 6.2E-06 52.2 3.5 127 1-139 173-329 (365)
497 2hjg_A GTP-binding protein ENG 89.7 0.14 4.7E-06 54.6 2.6 22 1-22 178-199 (436)
498 3syl_A Protein CBBX; photosynt 89.6 0.13 4.4E-06 51.5 2.3 22 2-23 71-92 (309)
499 1ofh_A ATP-dependent HSL prote 89.6 0.14 4.9E-06 51.0 2.6 21 2-22 54-74 (310)
500 1p5z_B DCK, deoxycytidine kina 89.6 0.087 3E-06 51.9 0.9 23 1-23 27-49 (263)
No 1
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=100.00 E-value=4.9e-44 Score=375.22 Aligned_cols=189 Identities=24% Similarity=0.413 Sum_probs=170.0
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCcc------cccceeEEEccCCCCCCCCCHHHHHHHHHHccC
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLESK------LLKIISAYVMQDDLLFPMLTVEETLMFAAEFRL 74 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~~------~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~ 74 (592)
++|+||||||||||+|+|+|+.+| .+|+|.++|+++... ..++.+|||+|++.+++.+||+||+.++...+
T Consensus 57 ~~IiGpnGaGKSTLlr~i~GL~~p--~~G~I~i~G~~i~~~~~~~~~~~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~- 133 (366)
T 3tui_C 57 YGVIGASGAGKSTLIRCVNLLERP--TEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELD- 133 (366)
T ss_dssp EEEECCTTSSHHHHHHHHHTSSCC--SEEEEEETTEECSSCCHHHHHHHHTTEEEECSSCCCCTTSCHHHHHHHHHHHS-
T ss_pred EEEEcCCCchHHHHHHHHhcCCCC--CceEEEECCEECCcCCHHHHHHHhCcEEEEeCCCccCCCCCHHHHHHHHHHhc-
Confidence 489999999999999999999885 469999999998642 23567999999999999999999999987754
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHH
Q 048028 75 PRSVTKTKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVNVL 154 (592)
Q Consensus 75 ~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l 154 (592)
..++++.+++++++++.+||.+.+++++ .+|||||||||+|||||+.+|++|||||||+|||+.++..++++|
T Consensus 134 --~~~~~~~~~~v~~lL~~vgL~~~~~~~~-----~~LSGGqkQRVaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL 206 (366)
T 3tui_C 134 --NTPKDEVKRRVTELLSLVGLGDKHDSYP-----SNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELL 206 (366)
T ss_dssp --CCCHHHHHHHHHHHHHHHTCGGGTTCCT-----TTSCHHHHHHHHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHH
T ss_pred --CCCHHHHHHHHHHHHHHcCCchHhcCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHH
Confidence 3466777889999999999998776554 569999999999999999999999999999999999999999999
Q ss_pred HHHHHc-CCEEEEEecCChhHHHhhhceEEEecCCeEeeecChhhHH
Q 048028 155 QRIAKS-GSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNETPSNLA 200 (592)
Q Consensus 155 ~~la~~-g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~~~~~ 200 (592)
++++++ |.|||++||+++ ++.++||||++|++|++++.|+++++.
T Consensus 207 ~~l~~~~g~Tii~vTHdl~-~~~~~aDrv~vl~~G~iv~~g~~~ev~ 252 (366)
T 3tui_C 207 KDINRRLGLTILLITHEMD-VVKRICDCVAVISNGELIEQDTVSEVF 252 (366)
T ss_dssp HHHHHHSCCEEEEEESCHH-HHHHHCSEEEEEETTEEEECCBHHHHH
T ss_pred HHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 999865 999999999997 688999999999999999999998863
No 2
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=100.00 E-value=8.5e-44 Score=375.67 Aligned_cols=189 Identities=26% Similarity=0.445 Sum_probs=171.1
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCcc-cccceeEEEccCCCCCCCCCHHHHHHHHHHccCCCCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLESK-LLKIISAYVMQDDLLFPMLTVEETLMFAAEFRLPRSVT 79 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~~-~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~ 79 (592)
++|+||||||||||||+|+|+.+| .+|+|.++|+++... ..++.+|||+|+..++|++||+||+.|+.+.+ ..+
T Consensus 32 ~~llGpsGsGKSTLLr~iaGl~~p--~~G~I~i~G~~~~~~~~~~r~ig~VfQ~~~l~p~ltV~eni~~~~~~~---~~~ 106 (381)
T 3rlf_A 32 VVFVGPSGCGKSTLLRMIAGLETI--TSGDLFIGEKRMNDTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLA---GAK 106 (381)
T ss_dssp EEEECCTTSSHHHHHHHHHTSSCC--SEEEEEETTEECTTCCGGGSCEEEECTTCCCCTTSCHHHHHTHHHHHT---TCC
T ss_pred EEEEcCCCchHHHHHHHHHcCCCC--CCeEEEECCEECCCCCHHHCCEEEEecCCcCCCCCCHHHHHHHHHHHc---CCC
Confidence 489999999999999999999885 469999999998643 33466999999999999999999999998764 356
Q ss_pred HHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Q 048028 80 KTKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVNVLQRIAK 159 (592)
Q Consensus 80 ~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~la~ 159 (592)
+++.+++++++++.+||++..++++ .+|||||||||+|||||+.+|++|||||||+|||+..+.++.+.|+++.+
T Consensus 107 ~~~~~~~v~~~l~~~~L~~~~~r~p-----~~LSGGqrQRVaiArAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~ 181 (381)
T 3rlf_A 107 KEVINQRVNQVAEVLQLAHLLDRKP-----KALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHK 181 (381)
T ss_dssp HHHHHHHHHHHHHHTTCGGGTTCCG-----GGSCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCchhhcCCh-----hHCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHH
Confidence 7777889999999999998876655 56999999999999999999999999999999999999999999999976
Q ss_pred c-CCEEEEEecCChhHHHhhhceEEEecCCeEeeecChhhHH
Q 048028 160 S-GSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNETPSNLA 200 (592)
Q Consensus 160 ~-g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~~~~~ 200 (592)
+ |.|+|++||+++ ++..++|||++|++|+++..|+++++.
T Consensus 182 ~~g~tii~vTHd~~-ea~~~aDri~vl~~G~i~~~g~~~~l~ 222 (381)
T 3rlf_A 182 RLGRTMIYVTHDQV-EAMTLADKIVVLDAGRVAQVGKPLELY 222 (381)
T ss_dssp HHCCEEEEECSCHH-HHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred hCCCEEEEEECCHH-HHHHhCCEEEEEECCEEEEEeCHHHHH
Confidence 5 999999999987 699999999999999999999999874
No 3
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=100.00 E-value=1e-43 Score=354.21 Aligned_cols=190 Identities=22% Similarity=0.381 Sum_probs=163.6
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCccc-------ccceeEEEccCCCCCCCCCHHHHHHHHHHcc
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLESKL-------LKIISAYVMQDDLLFPMLTVEETLMFAAEFR 73 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~~~-------~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~ 73 (592)
++|+||||||||||||+|+|+.+| .+|+|.++|+++.... .++.+|||+|++.+++.+||+||+.++...+
T Consensus 34 ~~iiG~nGsGKSTLl~~l~Gl~~p--~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~enl~~~~~~~ 111 (235)
T 3tif_A 34 VSIMGPSGSGKSTMLNIIGCLDKP--TEGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFK 111 (235)
T ss_dssp EEEECSTTSSHHHHHHHHTTSSCC--SEEEEEETTEECTTCCHHHHHHHHHHHEEEECTTCCCCTTSCHHHHHHHHHHTC
T ss_pred EEEECCCCCcHHHHHHHHhcCCCC--CceEEEECCEEcccCCHHHHHHHhhccEEEEecCCccCCCCcHHHHHHHHHHhh
Confidence 489999999999999999999885 4699999999875421 1345899999999999999999999987654
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCcccc-cccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHH
Q 048028 74 LPRSVTKTKKQERVEALINQLGLRSAA-KTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVN 152 (592)
Q Consensus 74 ~~~~~~~~~~~~~v~~~l~~lgL~~~~-~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~ 152 (592)
.....++++..+++.++++.++|.+.. +.. +.+|||||||||+|||||+.+|++|||||||+|||+.++.++++
T Consensus 112 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~~LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~ 186 (235)
T 3tif_A 112 YRGAMSGEERRKRALECLKMAELEERFANHK-----PNQLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQ 186 (235)
T ss_dssp SSSCCCHHHHHHHHHHHHHHTTCCGGGTTCC-----GGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHH
T ss_pred hccCCCHHHHHHHHHHHHHHCCCChhhhhCC-----hhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHH
Confidence 322345667778899999999998643 544 45699999999999999999999999999999999999999999
Q ss_pred HHHHHHHc-CCEEEEEecCChhHHHhhhceEEEecCCeEeeecChhhH
Q 048028 153 VLQRIAKS-GSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNETPSNL 199 (592)
Q Consensus 153 ~l~~la~~-g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~~~~ 199 (592)
.|++++++ |+|||++||+++ +.++|||+++|++|+++..++++++
T Consensus 187 ~l~~l~~~~g~tvi~vtHd~~--~~~~~d~i~~l~~G~i~~~~~~~~~ 232 (235)
T 3tif_A 187 LLKKLNEEDGKTVVVVTHDIN--VARFGERIIYLKDGEVEREEKLRGF 232 (235)
T ss_dssp HHHHHHHHHCCEEEEECSCHH--HHTTSSEEEEEETTEEEEEEECC--
T ss_pred HHHHHHHHcCCEEEEEcCCHH--HHHhCCEEEEEECCEEEEEcChhhh
Confidence 99999875 999999999986 4589999999999999999988764
No 4
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=100.00 E-value=6.2e-44 Score=374.27 Aligned_cols=189 Identities=27% Similarity=0.478 Sum_probs=167.3
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecC----c-ccccceeEEEccCCCCCCCCCHHHHHHHHHHccCC
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLE----S-KLLKIISAYVMQDDLLFPMLTVEETLMFAAEFRLP 75 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~----~-~~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~~ 75 (592)
++|+||||||||||||+|+|+.+| .+|+|.++|+++. . ...++.+|||+|+..++|++||+||+.|+.+.+
T Consensus 33 ~~llGpsGsGKSTLLr~iaGl~~p--~~G~I~i~G~~i~~~~~~~~~~~r~ig~vfQ~~~l~p~ltV~eni~~~l~~~-- 108 (359)
T 3fvq_A 33 LFIIGASGCGKTTLLRCLAGFEQP--DSGEISLSGKTIFSKNTNLPVRERRLGYLVQEGVLFPHLTVYRNIAYGLGNG-- 108 (359)
T ss_dssp EEEEESTTSSHHHHHHHHHTSSCC--SEEEEEETTEEEESSSCBCCGGGSCCEEECTTCCCCTTSCHHHHHHTTSTTS--
T ss_pred EEEECCCCchHHHHHHHHhcCCCC--CCcEEEECCEECcccccccchhhCCEEEEeCCCcCCCCCCHHHHHHHHHHHc--
Confidence 489999999999999999999885 4699999999872 2 234567999999999999999999999976543
Q ss_pred CCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHH
Q 048028 76 RSVTKTKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVNVLQ 155 (592)
Q Consensus 76 ~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~ 155 (592)
..++++.+++++++++.+||++.+|+++ .+|||||||||+|||||+.+|++|||||||+|||+..+.++.+.|+
T Consensus 109 -~~~~~~~~~~v~~~l~~~gL~~~~~r~~-----~~LSGGq~QRValArAL~~~P~lLLLDEPts~LD~~~r~~l~~~l~ 182 (359)
T 3fvq_A 109 -KGRTAQERQRIEAMLELTGISELAGRYP-----HELSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMI 182 (359)
T ss_dssp -SCCSHHHHHHHHHHHHHHTCGGGTTSCG-----GGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHH
T ss_pred -CCChHHHHHHHHHHHHHcCCchHhcCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHH
Confidence 2445667788999999999998887655 4699999999999999999999999999999999999999999888
Q ss_pred HHHH-cCCEEEEEecCChhHHHhhhceEEEecCCeEeeecChhhHH
Q 048028 156 RIAK-SGSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNETPSNLA 200 (592)
Q Consensus 156 ~la~-~g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~~~~~ 200 (592)
++.+ .|.|+|++|||++ ++..+||||++|++|+++..|+++++.
T Consensus 183 ~~~~~~g~tvi~vTHd~~-ea~~~aDri~vl~~G~i~~~g~~~el~ 227 (359)
T 3fvq_A 183 AALRANGKSAVFVSHDRE-EALQYADRIAVMKQGRILQTASPHELY 227 (359)
T ss_dssp HHHHHTTCEEEEECCCHH-HHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred HHHHhCCCEEEEEeCCHH-HHHHHCCEEEEEECCEEEEEeCHHHHH
Confidence 8764 5999999999987 689999999999999999999998874
No 5
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=100.00 E-value=2.2e-43 Score=357.04 Aligned_cols=189 Identities=25% Similarity=0.457 Sum_probs=166.1
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecC--c---ccccceeEEEccCCCCCCCCCHHHHHHHHH-HccC
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLE--S---KLLKIISAYVMQDDLLFPMLTVEETLMFAA-EFRL 74 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~--~---~~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~-~l~~ 74 (592)
++|+||||||||||||+|+|+++| .+|+|.++|+++. . ...++.++||+|++.+++.+||+||+.++. ..+
T Consensus 53 ~~liG~NGsGKSTLlk~l~Gl~~p--~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~l~~~~~~~~- 129 (263)
T 2olj_A 53 VVVIGPSGSGKSTFLRCLNLLEDF--DEGEIIIDGINLKAKDTNLNKVREEVGMVFQRFNLFPHMTVLNNITLAPMKVR- 129 (263)
T ss_dssp EEEECCTTSSHHHHHHHHTTSSCC--SEEEEEETTEESSSTTCCHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTS-
T ss_pred EEEEcCCCCcHHHHHHHHHcCCCC--CCcEEEECCEECCCccccHHHHhCcEEEEeCCCcCCCCCCHHHHHHHHHHHHc-
Confidence 489999999999999999999875 4699999999874 1 123566899999999999999999999864 332
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHH
Q 048028 75 PRSVTKTKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVNVL 154 (592)
Q Consensus 75 ~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l 154 (592)
..++++.+++++++++.+||++..++.+ ..|||||||||+||+||+.+|++|||||||+|||+.++..+.+.|
T Consensus 130 --~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----~~LSgGqkQRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l 202 (263)
T 2olj_A 130 --KWPREKAEAKAMELLDKVGLKDKAHAYP-----DSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVM 202 (263)
T ss_dssp --CCCHHHHHHHHHHHHHHTTCGGGTTSCG-----GGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHH
T ss_pred --CCCHHHHHHHHHHHHHHCCCchHhcCCh-----hhCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence 2345556678999999999998876655 469999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCEEEEEecCChhHHHhhhceEEEecCCeEeeecChhhHH
Q 048028 155 QRIAKSGSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNETPSNLA 200 (592)
Q Consensus 155 ~~la~~g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~~~~~ 200 (592)
++++++|+|||++||+++ ++.++||++++|++|++++.|+++++.
T Consensus 203 ~~l~~~g~tvi~vtHd~~-~~~~~~d~v~~l~~G~i~~~g~~~~~~ 247 (263)
T 2olj_A 203 KQLANEGMTMVVVTHEMG-FAREVGDRVLFMDGGYIIEEGKPEDLF 247 (263)
T ss_dssp HHHHHTTCEEEEECSCHH-HHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred HHHHhCCCEEEEEcCCHH-HHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 999888999999999987 588899999999999999999998764
No 6
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=100.00 E-value=1.9e-43 Score=357.78 Aligned_cols=189 Identities=26% Similarity=0.434 Sum_probs=166.0
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCc----------------ccccceeEEEccCCCCCCCCCHHH
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLES----------------KLLKIISAYVMQDDLLFPMLTVEE 64 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~----------------~~~~~~~~yv~Q~~~l~~~lTV~E 64 (592)
++|+||||||||||||+|+|+++| .+|+|.++|+++.. ...++.+|||+|++.+++.+||+|
T Consensus 35 ~~liG~nGsGKSTLlk~l~Gl~~p--~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~e 112 (262)
T 1b0u_A 35 ISIIGSSGSGKSTFLRCINFLEKP--SEGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLE 112 (262)
T ss_dssp EEEECCTTSSHHHHHHHHTTSSCC--SEEEEEETTEECCEEECTTSSEEESCHHHHHHHHHHEEEECSSCCCCTTSCHHH
T ss_pred EEEECCCCCCHHHHHHHHhcCCCC--CCcEEEECCEEccccccccccccccChhhHHHHhcceEEEecCcccCCCCcHHH
Confidence 489999999999999999999875 46999999998751 123556899999999999999999
Q ss_pred HHHHHH-HccCCCCCCHHHHHHHHHHHHHHcCCccc-ccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCC
Q 048028 65 TLMFAA-EFRLPRSVTKTKKQERVEALINQLGLRSA-AKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGL 142 (592)
Q Consensus 65 ~l~f~~-~l~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgL 142 (592)
|+.++. ..+ ..++.+.+++++++++.+||++. .++.++ +|||||||||+|||||+.+|++|||||||+||
T Consensus 113 ~l~~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~-----~LSgGq~qRv~lAraL~~~p~lllLDEPts~L 184 (262)
T 1b0u_A 113 NVMEAPIQVL---GLSKHDARERALKYLAKVGIDERAQGKYPV-----HLSGGQQQRVSIARALAMEPDVLLFDEPTSAL 184 (262)
T ss_dssp HHHHHHHHTT---CCCHHHHHHHHHHHHHHTTCCHHHHTSCGG-----GSCHHHHHHHHHHHHHHTCCSEEEEESTTTTS
T ss_pred HHHhhHHHhc---CCCHHHHHHHHHHHHHHcCCCchhhcCCcc-----cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccC
Confidence 999864 332 23455566789999999999987 766554 59999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHcCCEEEEEecCChhHHHhhhceEEEecCCeEeeecChhhHH
Q 048028 143 DSTSAFMVVNVLQRIAKSGSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNETPSNLA 200 (592)
Q Consensus 143 D~~~~~~i~~~l~~la~~g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~~~~~ 200 (592)
|+.++..+.+.|++++++|+|||++||+++ ++..+|||+++|++|+++..|+++++.
T Consensus 185 D~~~~~~~~~~l~~l~~~g~tvi~vtHd~~-~~~~~~d~v~~l~~G~i~~~g~~~~~~ 241 (262)
T 1b0u_A 185 DPELVGEVLRIMQQLAEEGKTMVVVTHEMG-FARHVSSHVIFLHQGKIEEEGDPEQVF 241 (262)
T ss_dssp CHHHHHHHHHHHHHHHHTTCCEEEECSCHH-HHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred CHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999888999999999987 588899999999999999999998763
No 7
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=100.00 E-value=1.4e-43 Score=360.56 Aligned_cols=189 Identities=23% Similarity=0.398 Sum_probs=166.5
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCc-----ccccceeEEEccCC-CCCCCCCHHHHHHHHHHccC
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLES-----KLLKIISAYVMQDD-LLFPMLTVEETLMFAAEFRL 74 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~-----~~~~~~~~yv~Q~~-~l~~~lTV~E~l~f~~~l~~ 74 (592)
++|+||||||||||+|+|+|+++| .+|+|.++|+++.. ...++.+|||+|++ ..+..+||+||+.|+...+
T Consensus 37 ~~iiGpnGsGKSTLl~~l~Gl~~p--~~G~I~~~G~~i~~~~~~~~~~~~~ig~v~Q~~~~~~~~~tv~e~l~~~~~~~- 113 (275)
T 3gfo_A 37 TAILGGNGVGKSTLFQNFNGILKP--SSGRILFDNKPIDYSRKGIMKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNM- 113 (275)
T ss_dssp EEEECCTTSSHHHHHHHHTTSSCC--SEEEEEETTEECCCSHHHHHHHHHSEEEECSSGGGTCCSSBHHHHHHHHHHTS-
T ss_pred EEEECCCCCCHHHHHHHHHcCCCC--CCeEEEECCEECCcccccHHHHhCcEEEEEcCcccccccCcHHHHHHHHHHHc-
Confidence 489999999999999999999875 46999999998841 23456799999996 3444789999999987643
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHH
Q 048028 75 PRSVTKTKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVNVL 154 (592)
Q Consensus 75 ~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l 154 (592)
..++++.+++++++++.+||++..+..++ .|||||||||+||+||+.+|++|||||||+|||+.++..+++.|
T Consensus 114 --~~~~~~~~~~~~~~l~~~~L~~~~~~~~~-----~LSgGqkQRv~iAraL~~~P~lLlLDEPts~LD~~~~~~i~~~l 186 (275)
T 3gfo_A 114 --KLPEDEIRKRVDNALKRTGIEHLKDKPTH-----CLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLL 186 (275)
T ss_dssp --CCCHHHHHHHHHHHHHHTTCGGGTTSBGG-----GSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHH
T ss_pred --CCCHHHHHHHHHHHHHHcCCchhhcCCcc-----cCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHH
Confidence 34667778899999999999988876654 59999999999999999999999999999999999999999999
Q ss_pred HHHH-HcCCEEEEEecCChhHHHhhhceEEEecCCeEeeecChhhHH
Q 048028 155 QRIA-KSGSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNETPSNLA 200 (592)
Q Consensus 155 ~~la-~~g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~~~~~ 200 (592)
++++ ++|+|||++||+++ ++.++|||+++|++|++++.|+++++.
T Consensus 187 ~~l~~~~g~tvi~vtHdl~-~~~~~~drv~~l~~G~i~~~g~~~~~~ 232 (275)
T 3gfo_A 187 VEMQKELGITIIIATHDID-IVPLYCDNVFVMKEGRVILQGNPKEVF 232 (275)
T ss_dssp HHHHHHHCCEEEEEESCCS-SGGGGCSEEEEEETTEEEEEECHHHHT
T ss_pred HHHHhhCCCEEEEEecCHH-HHHHhCCEEEEEECCEEEEECCHHHHh
Confidence 9998 56999999999998 588899999999999999999998874
No 8
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=100.00 E-value=3.3e-43 Score=368.91 Aligned_cols=189 Identities=26% Similarity=0.435 Sum_probs=169.5
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCcc-cccceeEEEccCCCCCCCCCHHHHHHHHHHccCCCCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLESK-LLKIISAYVMQDDLLFPMLTVEETLMFAAEFRLPRSVT 79 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~~-~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~ 79 (592)
++|+||||||||||||+|+|+.+| .+|+|.++|+++... ..++.+|||+|+..++|++||+||+.|+.+.+ ..+
T Consensus 44 ~~llGpnGsGKSTLLr~iaGl~~p--~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~l~~~---~~~ 118 (355)
T 1z47_A 44 VGLLGPSGSGKTTILRLIAGLERP--TKGDVWIGGKRVTDLPPQKRNVGLVFQNYALFQHMTVYDNVSFGLREK---RVP 118 (355)
T ss_dssp EEEECSTTSSHHHHHHHHHTSSCC--SEEEEEETTEECTTCCGGGSSEEEECGGGCCCTTSCHHHHHHHHHHHT---TCC
T ss_pred EEEECCCCCcHHHHHHHHhCCCCC--CccEEEECCEECCcCChhhCcEEEEecCcccCCCCCHHHHHHHHHHHc---CCC
Confidence 489999999999999999999875 469999999988542 34567999999999999999999999987654 245
Q ss_pred HHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Q 048028 80 KTKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVNVLQRIAK 159 (592)
Q Consensus 80 ~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~la~ 159 (592)
+++.+++++++++.+||++.+++++ .+|||||||||+|||||+.+|++|||||||+|||+..+.++.+.|+++.+
T Consensus 119 ~~~~~~~v~~~l~~~gL~~~~~r~~-----~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~ 193 (355)
T 1z47_A 119 KDEMDARVRELLRFMRLESYANRFP-----HELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHD 193 (355)
T ss_dssp HHHHHHHHHHHHHHTTCGGGTTSCG-----GGSCHHHHHHHHHHHHHTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCChhHhcCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH
Confidence 6667788999999999998876655 46999999999999999999999999999999999999999999999976
Q ss_pred c-CCEEEEEecCChhHHHhhhceEEEecCCeEeeecChhhHH
Q 048028 160 S-GSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNETPSNLA 200 (592)
Q Consensus 160 ~-g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~~~~~ 200 (592)
+ |.|+|++|||++ ++..++||+++|++|+++..|+++++.
T Consensus 194 ~~g~tvi~vTHd~~-~a~~~adri~vl~~G~i~~~g~~~~l~ 234 (355)
T 1z47_A 194 EMGVTSVFVTHDQE-EALEVADRVLVLHEGNVEQFGTPEEVY 234 (355)
T ss_dssp HHTCEEEEECSCHH-HHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred hcCCEEEEECCCHH-HHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 5 999999999987 688999999999999999999998874
No 9
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=4.7e-43 Score=353.44 Aligned_cols=190 Identities=27% Similarity=0.393 Sum_probs=167.3
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCc--ccccceeEEEccCCCCCCCCCHHHHHHHHHHccCCCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLES--KLLKIISAYVMQDDLLFPMLTVEETLMFAAEFRLPRSV 78 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~--~~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~~~~~ 78 (592)
++|+||||||||||||+|+|+.+| .+|+|.++|+++.. ...++.+|||+|++.+++.+||+||+.+....+ ..
T Consensus 44 ~~l~G~NGsGKSTLlk~l~Gl~~p--~~G~I~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~---~~ 118 (256)
T 1vpl_A 44 FGLIGPNGAGKTTTLRIISTLIKP--SSGIVTVFGKNVVEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFY---AS 118 (256)
T ss_dssp EEEECCTTSSHHHHHHHHTTSSCC--SEEEEEETTEETTTCHHHHHTTEEEECTTCCCCTTSBHHHHHHHHHHHH---CC
T ss_pred EEEECCCCCCHHHHHHHHhcCCCC--CceEEEECCEECCccHHHHhhcEEEEcCCCCCCCCCcHHHHHHHHHHHc---CC
Confidence 489999999999999999999875 46999999998753 234567999999999999999999999876543 23
Q ss_pred CHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 048028 79 TKTKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVNVLQRIA 158 (592)
Q Consensus 79 ~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~la 158 (592)
+.++.+++++++++.+||++..++.++ .|||||||||+||+||+.+|++|||||||+|||+.++..+++.|++++
T Consensus 119 ~~~~~~~~~~~~l~~~gL~~~~~~~~~-----~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~ 193 (256)
T 1vpl_A 119 SSSEIEEMVERATEIAGLGEKIKDRVS-----TYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQAS 193 (256)
T ss_dssp CHHHHHHHHHHHHHHHCCGGGGGSBGG-----GCCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHCCCchHhcCChh-----hCCHHHHHHHHHHHHHHcCCCEEEEeCCccccCHHHHHHHHHHHHHHH
Confidence 344556789999999999988876654 599999999999999999999999999999999999999999999998
Q ss_pred HcCCEEEEEecCChhHHHhhhceEEEecCCeEeeecChhhHHH
Q 048028 159 KSGSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNETPSNLAQ 201 (592)
Q Consensus 159 ~~g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~~~~~~ 201 (592)
++|+|||++||+++ ++..+||++++|++|++++.|+++++.+
T Consensus 194 ~~g~tiiivtHd~~-~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 235 (256)
T 1vpl_A 194 QEGLTILVSSHNML-EVEFLCDRIALIHNGTIVETGTVEELKE 235 (256)
T ss_dssp HTTCEEEEEECCHH-HHTTTCSEEEEEETTEEEEEEEHHHHHH
T ss_pred hCCCEEEEEcCCHH-HHHHHCCEEEEEECCEEEEecCHHHHHH
Confidence 78999999999987 5778899999999999999999888754
No 10
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=100.00 E-value=5.1e-43 Score=368.70 Aligned_cols=189 Identities=27% Similarity=0.467 Sum_probs=169.1
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCcc-cccceeEEEccCCCCCCCCCHHHHHHHHHHccCCCCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLESK-LLKIISAYVMQDDLLFPMLTVEETLMFAAEFRLPRSVT 79 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~~-~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~ 79 (592)
++|+||||||||||||+|+|+.+| .+|+|.++|+++... ..++.+|||+|+..++|++||+||+.|+.+.+ ..+
T Consensus 32 ~~llGpnGsGKSTLLr~iaGl~~p--~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~---~~~ 106 (362)
T 2it1_A 32 MALLGPSGSGKSTLLYTIAGIYKP--TSGKIYFDEKDVTELPPKDRNVGLVFQNWALYPHMTVYKNIAFPLELR---KAP 106 (362)
T ss_dssp EEEECCTTSSHHHHHHHHHTSSCC--SEEEEEETTEECTTSCGGGTTEEEECTTCCCCTTSCHHHHHHHHHHHT---TCC
T ss_pred EEEECCCCchHHHHHHHHhcCCCC--CceEEEECCEECCcCCHhHCcEEEEecCcccCCCCCHHHHHHHHHHhc---CCC
Confidence 489999999999999999999875 469999999998542 23467999999999999999999999987654 245
Q ss_pred HHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Q 048028 80 KTKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVNVLQRIAK 159 (592)
Q Consensus 80 ~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~la~ 159 (592)
+++.+++++++++.+||++..++++ ++|||||||||+|||||+.+|++|||||||||||+..+.++.+.|+++.+
T Consensus 107 ~~~~~~~v~~~l~~~~L~~~~~r~~-----~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~ 181 (362)
T 2it1_A 107 REEIDKKVREVAKMLHIDKLLNRYP-----WQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQK 181 (362)
T ss_dssp HHHHHHHHHHHHHHTTCTTCTTCCG-----GGSCHHHHHHHHHHHHHTTCCSEEEEESGGGGSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCchHhhCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHH
Confidence 5666788999999999998876655 46999999999999999999999999999999999999999999999976
Q ss_pred c-CCEEEEEecCChhHHHhhhceEEEecCCeEeeecChhhHH
Q 048028 160 S-GSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNETPSNLA 200 (592)
Q Consensus 160 ~-g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~~~~~ 200 (592)
+ |.|+|++|||++ ++..++||+++|++|+++..|+++++.
T Consensus 182 ~~g~tvi~vTHd~~-~a~~~adri~vl~~G~i~~~g~~~~~~ 222 (362)
T 2it1_A 182 ELGITTVYVTHDQA-EALAMADRIAVIREGEILQVGTPDEVY 222 (362)
T ss_dssp HHTCEEEEEESCHH-HHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred hCCCEEEEECCCHH-HHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 5 999999999987 688999999999999999999998874
No 11
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=100.00 E-value=8e-43 Score=369.01 Aligned_cols=189 Identities=28% Similarity=0.472 Sum_probs=168.8
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCc-------ccccceeEEEccCCCCCCCCCHHHHHHHHHHcc
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLES-------KLLKIISAYVMQDDLLFPMLTVEETLMFAAEFR 73 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~-------~~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~ 73 (592)
++|+||||||||||||+|+|+.+| .+|+|.++|+++.. ...++.+|||+|+..++|++||+||+.|+.+.+
T Consensus 32 ~~llGpnGsGKSTLLr~iaGl~~p--~~G~I~i~g~~~~~~~~~~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~ 109 (372)
T 1g29_1 32 MILLGPSGCGKTTTLRMIAGLEEP--SRGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLR 109 (372)
T ss_dssp EEEECSTTSSHHHHHHHHHTSSCC--SEEEEEETTEEEEEGGGTEECCGGGSSEEEECSCCCCCTTSCHHHHHHHHHHHT
T ss_pred EEEECCCCcHHHHHHHHHHcCCCC--CccEEEECCEECccccccccCCHhHCCEEEEeCCCccCCCCCHHHHHHHHHHHc
Confidence 489999999999999999999875 46999999998753 123567999999999999999999999987654
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHH
Q 048028 74 LPRSVTKTKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVNV 153 (592)
Q Consensus 74 ~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~ 153 (592)
..++++.+++++++++.+||++..++++ ++|||||||||+|||||+.+|++|||||||+|||+..+.++.+.
T Consensus 110 ---~~~~~~~~~~v~~~l~~~~L~~~~~r~~-----~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~ 181 (372)
T 1g29_1 110 ---KVPRQEIDQRVREVAELLGLTELLNRKP-----RELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAE 181 (372)
T ss_dssp ---TCCHHHHHHHHHHHHHHHTCGGGTTCCG-----GGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHH
T ss_pred ---CCCHHHHHHHHHHHHHHCCCchHhcCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHH
Confidence 2456666788999999999998877655 46999999999999999999999999999999999999999999
Q ss_pred HHHHHHc-CCEEEEEecCChhHHHhhhceEEEecCCeEeeecChhhHH
Q 048028 154 LQRIAKS-GSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNETPSNLA 200 (592)
Q Consensus 154 l~~la~~-g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~~~~~ 200 (592)
|+++.++ |.|+|++|||++ ++..++||+++|++|+++..|+++++.
T Consensus 182 l~~l~~~~g~tvi~vTHd~~-~a~~~adri~vl~~G~i~~~g~~~~l~ 228 (372)
T 1g29_1 182 LKKLQRQLGVTTIYVTHDQV-EAMTMGDRIAVMNRGVLQQVGSPDEVY 228 (372)
T ss_dssp HHHHHHHHTCEEEEEESCHH-HHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred HHHHHHhcCCEEEEECCCHH-HHHHhCCEEEEEeCCEEEEeCCHHHHH
Confidence 9999765 999999999987 688999999999999999999998874
No 12
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=100.00 E-value=5.1e-43 Score=346.75 Aligned_cols=184 Identities=32% Similarity=0.454 Sum_probs=161.2
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCccc------cc-ceeEEEccCCCCCCCCCHHHHHHHHHHcc
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLESKL------LK-IISAYVMQDDLLFPMLTVEETLMFAAEFR 73 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~~~------~~-~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~ 73 (592)
++|+||||||||||||+|+|+.+| .+|+|.++|+++.... .+ +.++||+|++.+++.+||+||+.+....+
T Consensus 33 ~~iiG~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~ 110 (224)
T 2pcj_A 33 VSIIGASGSGKSTLLYILGLLDAP--TEGKVFLEGKEVDYTNEKELSLLRNRKLGFVFQFHYLIPELTALENVIVPMLKM 110 (224)
T ss_dssp EEEEECTTSCHHHHHHHHTTSSCC--SEEEEEETTEECCSSCHHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHhcCCCC--CceEEEECCEECCCCCHHHHHHHHhCcEEEEecCcccCCCCCHHHHHHhHHHHc
Confidence 489999999999999999999875 4699999999875321 22 56899999999999999999999976543
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHH
Q 048028 74 LPRSVTKTKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVNV 153 (592)
Q Consensus 74 ~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~ 153 (592)
..++++.+++++++++.+||.+..++.++ .|||||||||+||+||+.+|++|+|||||+|||+.++..+.+.
T Consensus 111 ---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~ 182 (224)
T 2pcj_A 111 ---GKPKKEAKERGEYLLSELGLGDKLSRKPY-----ELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDI 182 (224)
T ss_dssp ---TCCHHHHHHHHHHHHHHTTCTTCTTCCGG-----GSCHHHHHHHHHHHHTTTCCSEEEEESTTTTCCHHHHHHHHHH
T ss_pred ---CCCHHHHHHHHHHHHHHcCCchhhhCChh-----hCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHH
Confidence 23445566789999999999988776654 5999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCEEEEEecCChhHHHhhhceEEEecCCeEeeecCh
Q 048028 154 LQRIAKSGSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNETP 196 (592)
Q Consensus 154 l~~la~~g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~ 196 (592)
|++++++|+|||++||+++ .+ ++||++++|++|++++.|+.
T Consensus 183 l~~l~~~g~tvi~vtHd~~-~~-~~~d~v~~l~~G~i~~~g~~ 223 (224)
T 2pcj_A 183 FLKINEGGTSIVMVTHERE-LA-ELTHRTLEMKDGKVVGEITR 223 (224)
T ss_dssp HHHHHHTTCEEEEECSCHH-HH-TTSSEEEEEETTEEEEEEEC
T ss_pred HHHHHHCCCEEEEEcCCHH-HH-HhCCEEEEEECCEEEEEeee
Confidence 9999878999999999986 45 89999999999999998863
No 13
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=100.00 E-value=4.2e-43 Score=368.93 Aligned_cols=189 Identities=24% Similarity=0.428 Sum_probs=167.4
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCcc-cccceeEEEccCCCCCCCCCHHHHHHHHHHccCCCCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLESK-LLKIISAYVMQDDLLFPMLTVEETLMFAAEFRLPRSVT 79 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~~-~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~ 79 (592)
++|+||||||||||||+|+|+.+| .+|+|.++|++++.. ..++.+|||+|+..++|++||+||+.|+.+.+ ..+
T Consensus 32 ~~llGpnGsGKSTLLr~iaGl~~p--~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~---~~~ 106 (359)
T 2yyz_A 32 VALLGPSGCGKTTTLLMLAGIYKP--TSGEIYFDDVLVNDIPPKYREVGMVFQNYALYPHMTVFENIAFPLRAR---RIS 106 (359)
T ss_dssp EEEECSTTSSHHHHHHHHHTSSCC--SEEEEEETTEECTTSCGGGTTEEEECSSCCCCTTSCHHHHHHGGGSSS---CSH
T ss_pred EEEEcCCCchHHHHHHHHHCCCCC--CccEEEECCEECCCCChhhCcEEEEecCcccCCCCCHHHHHHHHHHhc---CCC
Confidence 489999999999999999999875 469999999998642 23567999999999999999999999976443 233
Q ss_pred HHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Q 048028 80 KTKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVNVLQRIAK 159 (592)
Q Consensus 80 ~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~la~ 159 (592)
+++.+++++++++.+||++..++++ ++|||||||||+|||||+.+|++|||||||+|||+..+.++.+.|+++.+
T Consensus 107 ~~~~~~~v~~~l~~~~L~~~~~r~~-----~~LSgGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~ 181 (359)
T 2yyz_A 107 KDEVEKRVVEIARKLLIDNLLDRKP-----TQLSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQ 181 (359)
T ss_dssp HHHTTHHHHHHHHHTTCGGGTTSCG-----GGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCchHhcCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHH
Confidence 4455678999999999998877655 46999999999999999999999999999999999999999999999976
Q ss_pred c-CCEEEEEecCChhHHHhhhceEEEecCCeEeeecChhhHH
Q 048028 160 S-GSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNETPSNLA 200 (592)
Q Consensus 160 ~-g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~~~~~ 200 (592)
+ |.|+|++|||++ ++..++||+++|++|+++..|+++++.
T Consensus 182 ~~g~tvi~vTHd~~-~~~~~adri~vl~~G~i~~~g~~~~l~ 222 (359)
T 2yyz_A 182 ELGITSVYVTHDQA-EAMTMASRIAVFNQGKLVQYGTPDEVY 222 (359)
T ss_dssp HHCCEEEEEESCHH-HHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred hcCCEEEEEcCCHH-HHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 5 999999999987 688999999999999999999998874
No 14
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=100.00 E-value=2.9e-43 Score=351.76 Aligned_cols=187 Identities=26% Similarity=0.422 Sum_probs=163.4
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCc-ccccceeEEEccCCCCCCCCCHHHHHHHHHHccCCCCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLES-KLLKIISAYVMQDDLLFPMLTVEETLMFAAEFRLPRSVT 79 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~-~~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~ 79 (592)
++|+||||||||||||+|+|+.+| .+|+|.++|+++.. ...++.+|||+|++.+++.+||+||+.++...+ .
T Consensus 27 ~~liG~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~-----~ 99 (240)
T 2onk_A 27 CVLLGPTGAGKSVFLELIAGIVKP--DRGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVYRNIAYGLRNV-----E 99 (240)
T ss_dssp EEEECCTTSSHHHHHHHHHTSSCC--SEEEEEETTEECTTSCTTTSCCBCCCSSCCCCTTSCHHHHHHTTCTTS-----C
T ss_pred EEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEECCcCchhhCcEEEEcCCCccCCCCcHHHHHHHHHHHc-----C
Confidence 489999999999999999999875 46999999998753 234567899999999999999999998864321 1
Q ss_pred HHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Q 048028 80 KTKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVNVLQRIAK 159 (592)
Q Consensus 80 ~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~la~ 159 (592)
....+++++++++.+||.+..+++++ .|||||||||+|||||+.+|++|+|||||+|||+.++..+++.|+++++
T Consensus 100 ~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgGqkqRv~lAral~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~ 174 (240)
T 2onk_A 100 RVERDRRVREMAEKLGIAHLLDRKPA-----RLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQR 174 (240)
T ss_dssp HHHHHHHHHHHHHTTTCTTTTTCCGG-----GSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHcCCHHHhcCChh-----hCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH
Confidence 22236778999999999988776654 5999999999999999999999999999999999999999999999976
Q ss_pred c-CCEEEEEecCChhHHHhhhceEEEecCCeEeeecChhhHH
Q 048028 160 S-GSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNETPSNLA 200 (592)
Q Consensus 160 ~-g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~~~~~ 200 (592)
+ |+|||++||+++ ++..+||++++|++|++++.|+++++.
T Consensus 175 ~~g~tvi~vtHd~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~ 215 (240)
T 2onk_A 175 EFDVPILHVTHDLI-EAAMLADEVAVMLNGRIVEKGKLKELF 215 (240)
T ss_dssp HHTCCEEEEESCHH-HHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred hcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 4 999999999987 588899999999999999999998764
No 15
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=100.00 E-value=3.8e-43 Score=369.28 Aligned_cols=189 Identities=30% Similarity=0.457 Sum_probs=168.4
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCc------ccccceeEEEccCCCCCCCCCHHHHHHHHHHccC
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLES------KLLKIISAYVMQDDLLFPMLTVEETLMFAAEFRL 74 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~------~~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~ 74 (592)
++|+||||||||||||+|+|+.+| .+|+|.++|+++.. ...++.+|||+|+..++|++||+||+.|+.+.+
T Consensus 34 ~~llGpnGsGKSTLLr~iaGl~~p--~~G~I~i~g~~i~~~~~~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~- 110 (353)
T 1oxx_K 34 FGILGPSGAGKTTFMRIIAGLDVP--STGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNM- 110 (353)
T ss_dssp EEEECSCHHHHHHHHHHHHTSSCC--SEEEEEETTEEEEETTEESSCGGGSCEEEEETTSCCCTTSCHHHHHHGGGTTS-
T ss_pred EEEECCCCCcHHHHHHHHhCCCCC--CceEEEECCEECcccccccCChhhCCEEEEeCCCccCCCCCHHHHHHHHHHHc-
Confidence 489999999999999999999875 46999999998753 234567999999999999999999999976543
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHH
Q 048028 75 PRSVTKTKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVNVL 154 (592)
Q Consensus 75 ~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l 154 (592)
..++++.+++++++++.+||++..++++ ++|||||||||+|||||+.+|++|||||||+|||+..+.++.+.|
T Consensus 111 --~~~~~~~~~~v~~~l~~~~L~~~~~~~~-----~~LSGGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~l 183 (353)
T 1oxx_K 111 --KMSKEEIRKRVEEVAKILDIHHVLNHFP-----RELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALV 183 (353)
T ss_dssp --SCCHHHHHHHHHHHHHHTTCGGGTTSCG-----GGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHH
T ss_pred --CCCHHHHHHHHHHHHHHcCCchHhcCCh-----hhCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHH
Confidence 3456666788999999999998887655 469999999999999999999999999999999999999999999
Q ss_pred HHHHHc-CCEEEEEecCChhHHHhhhceEEEecCCeEeeecChhhHH
Q 048028 155 QRIAKS-GSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNETPSNLA 200 (592)
Q Consensus 155 ~~la~~-g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~~~~~ 200 (592)
+++.++ |.|+|++||+++ ++..++||+++|++|+++..|+++++.
T Consensus 184 ~~l~~~~g~tvi~vTHd~~-~~~~~adri~vl~~G~i~~~g~~~~l~ 229 (353)
T 1oxx_K 184 KEVQSRLGVTLLVVSHDPA-DIFAIADRVGVLVKGKLVQVGKPEDLY 229 (353)
T ss_dssp HHHHHHHCCEEEEEESCHH-HHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred HHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 999765 999999999987 688999999999999999999998874
No 16
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=100.00 E-value=5.5e-43 Score=353.65 Aligned_cols=190 Identities=22% Similarity=0.349 Sum_probs=164.1
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCcc----cccceeEEEccCCCCCCCCCHHHHHHHHHHc-cCC
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLESK----LLKIISAYVMQDDLLFPMLTVEETLMFAAEF-RLP 75 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~~----~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l-~~~ 75 (592)
++|+||||||||||||+|+|+++| .+|+|.++|+++... ..++.++||+|++.+++.+||+||+.++... +..
T Consensus 36 ~~liG~nGsGKSTLlk~l~Gl~~p--~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~ 113 (257)
T 1g6h_A 36 TLIIGPNGSGKSTLINVITGFLKA--DEGRVYFENKDITNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGES 113 (257)
T ss_dssp EEEECSTTSSHHHHHHHHTTSSCC--SEEEEEETTEECTTCCHHHHHHHTEEECCCCCGGGGGSBHHHHHHGGGTSTTSC
T ss_pred EEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEECCCCCHHHHHhCCEEEEccCCccCCCCcHHHHHHHHHhhhccC
Confidence 489999999999999999999875 469999999988532 2345689999999999999999999886532 111
Q ss_pred C---------CCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHH
Q 048028 76 R---------SVTKTKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTS 146 (592)
Q Consensus 76 ~---------~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~ 146 (592)
. ..++.+.+++++++++.+||++..++.++ .|||||||||+||+||+.+|++|||||||+|||+.+
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~ 188 (257)
T 1g6h_A 114 PLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAG-----ELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGL 188 (257)
T ss_dssp HHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGG-----GSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHH
T ss_pred cccccccccccCCHHHHHHHHHHHHHHcCCchhhCCCch-----hCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHH
Confidence 0 02234456789999999999988776654 599999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCEEEEEecCChhHHHhhhceEEEecCCeEeeecChhh
Q 048028 147 AFMVVNVLQRIAKSGSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNETPSN 198 (592)
Q Consensus 147 ~~~i~~~l~~la~~g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~~~ 198 (592)
+..+++.|++++++|+|||++||+++ ++.++|||+++|++|++++.|++++
T Consensus 189 ~~~l~~~l~~l~~~g~tvi~vtHd~~-~~~~~~d~v~~l~~G~i~~~g~~~~ 239 (257)
T 1g6h_A 189 AHDIFNHVLELKAKGITFLIIEHRLD-IVLNYIDHLYVMFNGQIIAEGRGEE 239 (257)
T ss_dssp HHHHHHHHHHHHHTTCEEEEECSCCS-TTGGGCSEEEEEETTEEEEEEESHH
T ss_pred HHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEEECCEEEEEeCHHH
Confidence 99999999999888999999999997 5788999999999999999999887
No 17
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=100.00 E-value=7.9e-43 Score=368.49 Aligned_cols=189 Identities=24% Similarity=0.404 Sum_probs=161.7
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCcc-cccceeEEEccCCCCCCCCCHHHHHHHHHHccCCCCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLESK-LLKIISAYVMQDDLLFPMLTVEETLMFAAEFRLPRSVT 79 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~~-~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~ 79 (592)
++|+||||||||||||+|+|+.+| .+|+|.++|+++... ..++.+|||+|+..++|++||+||+.|+.+.+ ..+
T Consensus 40 ~~llGpnGsGKSTLLr~iaGl~~p--~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~---~~~ 114 (372)
T 1v43_A 40 LVLLGPSGCGKTTTLRMIAGLEEP--TEGRIYFGDRDVTYLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIK---KFP 114 (372)
T ss_dssp EEEECCTTSSHHHHHHHHHTSSCC--SEEEEEETTEECTTSCGGGGTEEEEEC------CCCHHHHHHTTCC-----CCC
T ss_pred EEEECCCCChHHHHHHHHHcCCCC--CceEEEECCEECCCCChhhCcEEEEecCcccCCCCCHHHHHHHHHHhc---CCC
Confidence 489999999999999999999875 469999999988542 23467999999999999999999999875432 345
Q ss_pred HHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Q 048028 80 KTKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVNVLQRIAK 159 (592)
Q Consensus 80 ~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~la~ 159 (592)
+++.+++++++++.+||++.+++++ ++|||||||||+|||||+.+|++|||||||+|||+..+.++.+.|+++.+
T Consensus 115 ~~~~~~~v~~~l~~~~L~~~~~r~~-----~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~ 189 (372)
T 1v43_A 115 KDEIDKRVRWAAELLQIEELLNRYP-----AQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQ 189 (372)
T ss_dssp HHHHHHHHHHHHHHTTCGGGTTSCT-----TTCCSSCHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCChhHhcCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHH
Confidence 6666788999999999998876654 56999999999999999999999999999999999999999999999986
Q ss_pred c-CCEEEEEecCChhHHHhhhceEEEecCCeEeeecChhhHH
Q 048028 160 S-GSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNETPSNLA 200 (592)
Q Consensus 160 ~-g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~~~~~ 200 (592)
+ |.|+|++|||++ ++..++||+++|++|+++..|+++++.
T Consensus 190 ~~g~tvi~vTHd~~-~a~~~adri~vl~~G~i~~~g~~~~l~ 230 (372)
T 1v43_A 190 KLKVTTIYVTHDQV-EAMTMGDRIAVMNRGQLLQIGSPTEVY 230 (372)
T ss_dssp HHTCEEEEEESCHH-HHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred hCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 5 999999999987 688999999999999999999998874
No 18
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=100.00 E-value=1.4e-42 Score=351.99 Aligned_cols=186 Identities=27% Similarity=0.382 Sum_probs=164.0
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCcc---cccceeEEEccCCCCCCCCCHHHHHHHHHHccCCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLESK---LLKIISAYVMQDDLLFPMLTVEETLMFAAEFRLPRS 77 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~~---~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~~~~ 77 (592)
++|+||||||||||+|+|+|+.+|. +|+|.++|+++... ..++.++|++|++.+++.+||+||+.++....
T Consensus 40 ~~liG~nGsGKSTLl~~l~Gl~~p~--~G~I~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~---- 113 (266)
T 4g1u_C 40 VAIIGPNGAGKSTLLRLLTGYLSPS--HGECHLLGQNLNSWQPKALARTRAVMRQYSELAFPFSVSEVIQMGRAPY---- 113 (266)
T ss_dssp EEEECCTTSCHHHHHHHHTSSSCCS--SCEEEETTEETTTSCHHHHHHHEEEECSCCCCCSCCBHHHHHHGGGTTS----
T ss_pred EEEECCCCCcHHHHHHHHhcCCCCC--CcEEEECCEECCcCCHHHHhheEEEEecCCccCCCCCHHHHHHhhhhhc----
Confidence 5899999999999999999998864 59999999998642 34566899999999988999999999875432
Q ss_pred CCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhh------CCcEEEEeCCCCCCCHHHHHHHH
Q 048028 78 VTKTKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIH------DPILLFLDEPTSGLDSTSAFMVV 151 (592)
Q Consensus 78 ~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~------~p~lllLDEPtsgLD~~~~~~i~ 151 (592)
...+.+++++++++.++|.+..++.++ .|||||||||+|||||+. +|++|||||||+|||+.++.+++
T Consensus 114 -~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgGq~QRv~iAraL~~~~~~~~~p~lLllDEPts~LD~~~~~~i~ 187 (266)
T 4g1u_C 114 -GGSQDRQALQQVMAQTDCLALAQRDYR-----VLSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTL 187 (266)
T ss_dssp -CSTTHHHHHHHHHHHTTCSTTTTSBGG-----GCCHHHHHHHHHHHHHHHTCCSSCCCEEEEECCCCSSCCHHHHHHHH
T ss_pred -CcHHHHHHHHHHHHHcCChhHhcCCcc-----cCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCccccCCHHHHHHHH
Confidence 223446789999999999988876654 599999999999999999 99999999999999999999999
Q ss_pred HHHHHHHHc-CCEEEEEecCChhHHHhhhceEEEecCCeEeeecChhhH
Q 048028 152 NVLQRIAKS-GSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNETPSNL 199 (592)
Q Consensus 152 ~~l~~la~~-g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~~~~ 199 (592)
+.|++++++ |+|||++||+++ ++.++|||+++|++|++++.|+++++
T Consensus 188 ~~l~~l~~~~~~tvi~vtHdl~-~~~~~~d~v~vl~~G~i~~~g~~~~~ 235 (266)
T 4g1u_C 188 RLLRQLTRQEPLAVCCVLHDLN-LAALYADRIMLLAQGKLVACGTPEEV 235 (266)
T ss_dssp HHHHHHHHHSSEEEEEECSCHH-HHHHHCSEEEEEETTEEEEEECHHHH
T ss_pred HHHHHHHHcCCCEEEEEEcCHH-HHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 999999876 579999999997 68889999999999999999999876
No 19
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=1.4e-42 Score=347.16 Aligned_cols=187 Identities=30% Similarity=0.461 Sum_probs=161.7
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCccc----ccceeEEEccCCCCCCCCCHHHHHHHHHHccCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLESKL----LKIISAYVMQDDLLFPMLTVEETLMFAAEFRLPR 76 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~~~----~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~~~ 76 (592)
++|+||||||||||||+|+|+.+| .+|+|.++|+++.... .++.++||+|++.+++.+||+||+.++....
T Consensus 35 ~~l~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~--- 109 (240)
T 1ji0_A 35 VTLIGANGAGKTTTLSAIAGLVRA--QKGKIIFNGQDITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNR--- 109 (240)
T ss_dssp EEEECSTTSSHHHHHHHHTTSSCC--SEEEEEETTEECTTCCHHHHHHTTEEEECSSCCCCTTSBHHHHHHGGGTTC---
T ss_pred EEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEECCCCCHHHHHhCCEEEEecCCccCCCCcHHHHHHHhhhcC---
Confidence 489999999999999999999875 4699999999885321 2345899999999999999999998864211
Q ss_pred CCCHHHHHHHHHHHHHHcC-CcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHH
Q 048028 77 SVTKTKKQERVEALINQLG-LRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVNVLQ 155 (592)
Q Consensus 77 ~~~~~~~~~~v~~~l~~lg-L~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~ 155 (592)
.+.++.+++++++++.++ |.+..++.+ ..|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|+
T Consensus 110 -~~~~~~~~~~~~~l~~~~~l~~~~~~~~-----~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~ 183 (240)
T 1ji0_A 110 -KDKEGIKRDLEWIFSLFPRLKERLKQLG-----GTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQ 183 (240)
T ss_dssp -CCSSHHHHHHHHHHHHCHHHHTTTTSBS-----SSSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHH
T ss_pred -CCHHHHHHHHHHHHHHcccHhhHhcCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHH
Confidence 123345577889999995 887766554 5699999999999999999999999999999999999999999999
Q ss_pred HHHHcCCEEEEEecCChhHHHhhhceEEEecCCeEeeecChhhH
Q 048028 156 RIAKSGSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNETPSNL 199 (592)
Q Consensus 156 ~la~~g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~~~~ 199 (592)
+++++|+|||++||+++ ++.++|||+++|++|++++.|+++++
T Consensus 184 ~~~~~g~tvi~vtHd~~-~~~~~~d~v~~l~~G~i~~~g~~~~~ 226 (240)
T 1ji0_A 184 KINQEGTTILLVEQNAL-GALKVAHYGYVLETGQIVLEGKASEL 226 (240)
T ss_dssp HHHHTTCCEEEEESCHH-HHHHHCSEEEEEETTEEEEEEEHHHH
T ss_pred HHHHCCCEEEEEecCHH-HHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 99878999999999987 58899999999999999999998776
No 20
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=100.00 E-value=1.7e-42 Score=363.17 Aligned_cols=186 Identities=26% Similarity=0.411 Sum_probs=164.8
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCcc-cccceeEEEccCCCCCCCCCHHHHHHHHHHccCCCCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLESK-LLKIISAYVMQDDLLFPMLTVEETLMFAAEFRLPRSVT 79 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~~-~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~ 79 (592)
++|+||||||||||||+|+|+.+| .+|+|.++|+++... ..++.+|||+|+..++|++||+||+.|+.+.+. .+
T Consensus 29 ~~llGpnGsGKSTLLr~iaGl~~p--~~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~enl~~~~~~~~---~~ 103 (348)
T 3d31_A 29 FVILGPTGAGKTLFLELIAGFHVP--DSGRILLDGKDVTDLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKK---IK 103 (348)
T ss_dssp EEEECCCTHHHHHHHHHHHTSSCC--SEEEEEETTEECTTSCHHHHTCEEECTTCCCCTTSCHHHHHHHHHHHHC---CC
T ss_pred EEEECCCCccHHHHHHHHHcCCCC--CCcEEEECCEECCCCchhhCcEEEEecCcccCCCCCHHHHHHHHHHHcC---CC
Confidence 489999999999999999999875 469999999988542 235678999999999999999999999876532 12
Q ss_pred HHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Q 048028 80 KTKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVNVLQRIAK 159 (592)
Q Consensus 80 ~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~la~ 159 (592)
+. ++++++++.+||++..|+++ ++|||||||||+|||||+.+|++|||||||+|||+..+.++.+.|+++.+
T Consensus 104 ~~---~~v~~~l~~~~L~~~~~~~~-----~~LSgGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~ 175 (348)
T 3d31_A 104 DP---KRVLDTARDLKIEHLLDRNP-----LTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHK 175 (348)
T ss_dssp CH---HHHHHHHHHTTCTTTTTSCG-----GGSCHHHHHHHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHH
T ss_pred HH---HHHHHHHHHcCCchHhcCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHH
Confidence 22 67999999999998887665 46999999999999999999999999999999999999999999999976
Q ss_pred c-CCEEEEEecCChhHHHhhhceEEEecCCeEeeecChhhHH
Q 048028 160 S-GSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNETPSNLA 200 (592)
Q Consensus 160 ~-g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~~~~~ 200 (592)
+ |.|+|++||+++ ++..++||+++|++|+++..|+++++.
T Consensus 176 ~~g~tii~vTHd~~-~~~~~adri~vl~~G~i~~~g~~~~~~ 216 (348)
T 3d31_A 176 KNKLTVLHITHDQT-EARIMADRIAVVMDGKLIQVGKPEEIF 216 (348)
T ss_dssp HTTCEEEEEESCHH-HHHHHCSEEEEESSSCEEEEECHHHHH
T ss_pred hcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 4 999999999987 688999999999999999999998873
No 21
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=100.00 E-value=5.8e-42 Score=347.82 Aligned_cols=189 Identities=28% Similarity=0.420 Sum_probs=162.8
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCcccccceeEEEccCC-CCCCCCCHHHHHHHHHHccCCCCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLESKLLKIISAYVMQDD-LLFPMLTVEETLMFAAEFRLPRSVT 79 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~~~~~~~~~yv~Q~~-~l~~~lTV~E~l~f~~~l~~~~~~~ 79 (592)
++|+||||||||||||+|+|+.+| .+|+|.++|+++.....++.+|||+|++ .+++.+||+||+.+..... .+
T Consensus 36 ~~liG~nGsGKSTLl~~i~Gl~~p--~~G~I~~~g~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~----~~ 109 (266)
T 2yz2_A 36 LLVAGNTGSGKSTLLQIVAGLIEP--TSGDVLYDGERKKGYEIRRNIGIAFQYPEDQFFAERVFDEVAFAVKNF----YP 109 (266)
T ss_dssp EEEECSTTSSHHHHHHHHTTSSCC--SEEEEEETTEECCHHHHGGGEEEECSSGGGGCCCSSHHHHHHHTTTTT----CT
T ss_pred EEEECCCCCcHHHHHHHHhCCCCC--CCcEEEECCEECchHHhhhhEEEEeccchhhcCCCcHHHHHHHHHHhc----CC
Confidence 489999999999999999999875 4699999999876434456799999995 5667899999999864321 12
Q ss_pred HHHHHHHHHHHHHHcCCc--ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 048028 80 KTKKQERVEALINQLGLR--SAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVNVLQRI 157 (592)
Q Consensus 80 ~~~~~~~v~~~l~~lgL~--~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~l 157 (592)
+.+.+++++++++.+||. +..++++ +.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++
T Consensus 110 ~~~~~~~~~~~l~~~gl~~~~~~~~~~-----~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l 184 (266)
T 2yz2_A 110 DRDPVPLVKKAMEFVGLDFDSFKDRVP-----FFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKW 184 (266)
T ss_dssp TSCSHHHHHHHHHHTTCCHHHHTTCCG-----GGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCcCCcccccCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHH
Confidence 223356789999999998 8776665 469999999999999999999999999999999999999999999999
Q ss_pred HHcCCEEEEEecCChhHHHhhhceEEEecCCeEeeecChhhHHH
Q 048028 158 AKSGSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNETPSNLAQ 201 (592)
Q Consensus 158 a~~g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~~~~~~ 201 (592)
+++|+|||++||+++ .+..+||++++|++|+++..|+++++.+
T Consensus 185 ~~~g~tii~vtHd~~-~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 227 (266)
T 2yz2_A 185 KTLGKTVILISHDIE-TVINHVDRVVVLEKGKKVFDGTRMEFLE 227 (266)
T ss_dssp HHTTCEEEEECSCCT-TTGGGCSEEEEEETTEEEEEEEHHHHHH
T ss_pred HHcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 877999999999997 4778899999999999999999887743
No 22
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=100.00 E-value=2.5e-41 Score=340.11 Aligned_cols=190 Identities=24% Similarity=0.316 Sum_probs=154.3
Q ss_pred CEEECCCCCcHHHHHHHHhCC--CCCCCceeEEEECCEecCccc----ccceeEEEccCCCCCCCCCHHHHHHHHHHccC
Q 048028 1 MAILGASGAGKTTLMDALAGR--IEKESLQGAVTLNGEVLESKL----LKIISAYVMQDDLLFPMLTVEETLMFAAEFRL 74 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~--~~~~~~~G~I~i~g~~~~~~~----~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~ 74 (592)
++|+||||||||||+|+|+|+ .+ +.+|+|.++|+++.... .++.++|++|++.+++.+||+||+.+......
T Consensus 32 ~~l~G~nGsGKSTLlk~l~Gl~~~~--p~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~ 109 (250)
T 2d2e_A 32 HALMGPNGAGKSTLGKILAGDPEYT--VERGEILLDGENILELSPDERARKGLFLAFQYPVEVPGVTIANFLRLALQAKL 109 (250)
T ss_dssp EEEECSTTSSHHHHHHHHHTCTTCE--EEEEEEEETTEECTTSCHHHHHHTTBCCCCCCCC-CCSCBHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhCCCCCC--CCceEEEECCEECCCCCHHHHHhCcEEEeccCCccccCCCHHHHHHHHHHhhc
Confidence 489999999999999999998 44 35799999999875321 23447999999999999999999998653211
Q ss_pred CCCCCHHHHHHHHHHHHHHcCC-cccccccccCCCCCC-CCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHH
Q 048028 75 PRSVTKTKKQERVEALINQLGL-RSAAKTFIGDERHRG-VSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVN 152 (592)
Q Consensus 75 ~~~~~~~~~~~~v~~~l~~lgL-~~~~~~~vg~~~~~~-LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~ 152 (592)
.......+..++++++++.+|| .+..++.+ .. |||||||||+|||+|+.+|++|||||||+|||+.++..+++
T Consensus 110 ~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~-----~~~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~ 184 (250)
T 2d2e_A 110 GREVGVAEFWTKVKKALELLDWDESYLSRYL-----NEGFSGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVAR 184 (250)
T ss_dssp TSCCCHHHHHHHHHHHHHHHTCCGGGGGSBT-----TCC----HHHHHHHHHHHHHCCSEEEEECGGGTTCHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHHcCCChhHhcCCc-----ccCCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHH
Confidence 1112334456788999999999 46666554 45 99999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCEEEEEecCChhHHHhh-hceEEEecCCeEeeecChhh
Q 048028 153 VLQRIAKSGSIVIMSIHQPSYRILSL-LDRLIILSHGQSVYNETPSN 198 (592)
Q Consensus 153 ~l~~la~~g~tvi~~~H~~~~~i~~~-~D~v~ll~~G~~v~~g~~~~ 198 (592)
.|++++++|+|||++||+++ .+..+ ||++++|++|++++.|+++.
T Consensus 185 ~l~~l~~~g~tvi~vtHd~~-~~~~~~~d~v~~l~~G~i~~~g~~~~ 230 (250)
T 2d2e_A 185 GVNAMRGPNFGALVITHYQR-ILNYIQPDKVHVMMDGRVVATGGPEL 230 (250)
T ss_dssp HHHHHCSTTCEEEEECSSSG-GGGTSCCSEEEEEETTEEEEEESHHH
T ss_pred HHHHHHhcCCEEEEEecCHH-HHHHhcCCEEEEEECCEEEEEeCHHH
Confidence 99999777999999999997 46667 59999999999999999873
No 23
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=100.00 E-value=4.4e-41 Score=337.68 Aligned_cols=182 Identities=25% Similarity=0.379 Sum_probs=159.9
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCc---ccccceeEEEccCCCCCCCCCHHHHHHHHHHccCCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLES---KLLKIISAYVMQDDLLFPMLTVEETLMFAAEFRLPRS 77 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~---~~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~~~~ 77 (592)
++|+||||||||||||+|+|+++| . |+|.++|+++.. ...++.++|++|++.+++.+||+||+.+... +.
T Consensus 29 ~~liG~NGsGKSTLlk~l~Gl~~p--~-G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~---~~- 101 (249)
T 2qi9_C 29 LHLVGPNGAGKSTLLARMAGMTSG--K-GSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVWHYLTLHQH---DK- 101 (249)
T ss_dssp EEEECCTTSSHHHHHHHHTTSSCC--E-EEEEETTEEGGGSCHHHHHHHEEEECSCCCCCTTCBHHHHHHTTCS---ST-
T ss_pred EEEECCCCCcHHHHHHHHhCCCCC--C-eEEEECCEECCcCCHHHHhceEEEECCCCccCCCCcHHHHHHHhhc---cC-
Confidence 489999999999999999999874 5 999999998753 2345679999999999999999999987521 11
Q ss_pred CCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCc-------EEEEeCCCCCCCHHHHHHH
Q 048028 78 VTKTKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPI-------LLFLDEPTSGLDSTSAFMV 150 (592)
Q Consensus 78 ~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~-------lllLDEPtsgLD~~~~~~i 150 (592)
.+ +++++++++.+||++..++.+ ..|||||||||+||++|+.+|+ +|||||||+|||+.++..+
T Consensus 102 ~~----~~~~~~~l~~~~l~~~~~~~~-----~~LSgGq~qrv~lAraL~~~p~~~~~~~~lllLDEPts~LD~~~~~~l 172 (249)
T 2qi9_C 102 TR----TELLNDVAGALALDDKLGRST-----NQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSAL 172 (249)
T ss_dssp TC----HHHHHHHHHHTTCGGGTTSBG-----GGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSTTTTCCHHHHHHH
T ss_pred Cc----HHHHHHHHHHcCChhHhcCCh-----hhCCHHHHHHHHHHHHHHcCCCcCCCCCeEEEEECCcccCCHHHHHHH
Confidence 11 467899999999998877655 4699999999999999999999 9999999999999999999
Q ss_pred HHHHHHHHHcCCEEEEEecCChhHHHhhhceEEEecCCeEeeecChhhH
Q 048028 151 VNVLQRIAKSGSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNETPSNL 199 (592)
Q Consensus 151 ~~~l~~la~~g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~~~~ 199 (592)
.+.|++++++|+|||+++|+++ .+.+++|++++|++|++++.|+++++
T Consensus 173 ~~~l~~l~~~g~tviivtHd~~-~~~~~~d~v~~l~~G~i~~~g~~~~~ 220 (249)
T 2qi9_C 173 DKILSALSQQGLAIVMSSHDLN-HTLRHAHRAWLLKGGKMLASGRREEV 220 (249)
T ss_dssp HHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEETTEEEEEEEHHHH
T ss_pred HHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999877999999999987 57789999999999999999998776
No 24
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=100.00 E-value=1.8e-41 Score=346.02 Aligned_cols=191 Identities=24% Similarity=0.369 Sum_probs=159.1
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecC--c---ccccceeEEEccCCCC--CCCCCHHHHHHHHHHcc
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLE--S---KLLKIISAYVMQDDLL--FPMLTVEETLMFAAEFR 73 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~--~---~~~~~~~~yv~Q~~~l--~~~lTV~E~l~f~~~l~ 73 (592)
++|+||||||||||||+|+|+++| .+|+|.++|+++. . ...++.++||+|++.+ .+.+||+||+.++....
T Consensus 50 ~~liG~NGsGKSTLlk~l~Gl~~p--~~G~I~~~g~~~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~ltv~enl~~~~~~~ 127 (279)
T 2ihy_A 50 WILYGLNGAGKTTLLNILNAYEPA--TSGTVNLFGKMPGKVGYSAETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKS 127 (279)
T ss_dssp EEEECCTTSSHHHHHHHHTTSSCC--SEEEEEETTBCCC---CCHHHHHTTEEEECHHHHTTSCTTSBHHHHHHTTC---
T ss_pred EEEECCCCCcHHHHHHHHhCCCCC--CCeEEEECCEEcccccCCHHHHcCcEEEEEcCcccccCCCCCHHHHHHhhhhhc
Confidence 489999999999999999999875 4699999998875 2 2345679999999754 34579999998753211
Q ss_pred CC-CCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHH
Q 048028 74 LP-RSVTKTKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVN 152 (592)
Q Consensus 74 ~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~ 152 (592)
.. .....++.+++++++++.+||++..++.++ .|||||||||+|||||+.+|++|||||||+|||+.++..+++
T Consensus 128 ~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~-----~LSgGqkqRv~lAraL~~~p~lLlLDEPts~LD~~~~~~l~~ 202 (279)
T 2ihy_A 128 IGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYIG-----YLSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLS 202 (279)
T ss_dssp ------CCHHHHHHHHHHHHHTTCGGGTTSBGG-----GSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHH
T ss_pred cccccCCcHHHHHHHHHHHHHcCChhHhcCChh-----hCCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHH
Confidence 00 011223446788999999999988776654 599999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCEE--EEEecCChhHHHhhhceEEEecCCeEeeecChhhH
Q 048028 153 VLQRIAKSGSIV--IMSIHQPSYRILSLLDRLIILSHGQSVYNETPSNL 199 (592)
Q Consensus 153 ~l~~la~~g~tv--i~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~~~~ 199 (592)
.|++++++|+|| |++||+++ ++.++||++++|++|++++.|+++++
T Consensus 203 ~l~~l~~~g~tv~~iivtHd~~-~~~~~~d~v~~l~~G~i~~~g~~~~~ 250 (279)
T 2ihy_A 203 ILDSLSDSYPTLAMIYVTHFIE-EITANFSKILLLKDGQSIQQGAVEDI 250 (279)
T ss_dssp HHHHHHHHCTTCEEEEEESCGG-GCCTTCCEEEEEETTEEEEEEEHHHH
T ss_pred HHHHHHHCCCEEEEEEEecCHH-HHHHhCCEEEEEECCEEEEECCHHHH
Confidence 999998779999 99999997 57789999999999999999998775
No 25
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=100.00 E-value=2.5e-40 Score=335.93 Aligned_cols=196 Identities=26% Similarity=0.281 Sum_probs=161.2
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCcc---cc-cceeEEEccCCCCCCCCCHHHHHHHHHH-cc--
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLESK---LL-KIISAYVMQDDLLFPMLTVEETLMFAAE-FR-- 73 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~~---~~-~~~~~yv~Q~~~l~~~lTV~E~l~f~~~-l~-- 73 (592)
++|+||||||||||||+|+|+....+.+|+|.++|+++... .. ++.++||+|++.+++.+||.|++.+... .+
T Consensus 49 ~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~~~~~~~~~~~~ 128 (267)
T 2zu0_C 49 HAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSY 128 (267)
T ss_dssp EEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSCHHHHHHHTEEEECSSCCCCTTCBHHHHHHHHHHHHHHG
T ss_pred EEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCCHHHHhhCCEEEEccCccccccccHHHHHHHHHHhhhhh
Confidence 48999999999999999999853224579999999987532 11 3348999999999999999999987542 11
Q ss_pred -CCCCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHH
Q 048028 74 -LPRSVTKTKKQERVEALINQLGLR-SAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVV 151 (592)
Q Consensus 74 -~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~ 151 (592)
.....+.++.+++++++++.+||. +..++.++ .+|||||||||+|||||+.+|++|||||||+|||+.++..++
T Consensus 129 ~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~----~~LSgGq~QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~ 204 (267)
T 2zu0_C 129 RGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVN----VGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVA 204 (267)
T ss_dssp GGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTT----TTCCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHH
T ss_pred hccccCCHHHHHHHHHHHHHHcCCChhHhcCCcc----cCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHH
Confidence 111233445567899999999996 45554432 149999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCEEEEEecCChhHHHhh-hceEEEecCCeEeeecChhhHHH
Q 048028 152 NVLQRIAKSGSIVIMSIHQPSYRILSL-LDRLIILSHGQSVYNETPSNLAQ 201 (592)
Q Consensus 152 ~~l~~la~~g~tvi~~~H~~~~~i~~~-~D~v~ll~~G~~v~~g~~~~~~~ 201 (592)
+.|++++++|+|||++||+++ .+..+ |||+++|++|++++.|+++++..
T Consensus 205 ~~l~~l~~~g~tviivtHd~~-~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 254 (267)
T 2zu0_C 205 DGVNSLRDGKRSFIIVTHYQR-ILDYIKPDYVHVLYQGRIVKSGDFTLVKQ 254 (267)
T ss_dssp HHHHTTCCSSCEEEEECSSGG-GGGTSCCSEEEEEETTEEEEEECTTHHHH
T ss_pred HHHHHHHhcCCEEEEEeeCHH-HHHhhcCCEEEEEECCEEEEEcCHHHHhh
Confidence 999999777999999999987 46565 89999999999999999987653
No 26
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=100.00 E-value=4e-40 Score=331.69 Aligned_cols=180 Identities=26% Similarity=0.380 Sum_probs=155.1
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCcccccceeEEEccCCCCCCCCCHHHHHHHHHHccCC-CCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLESKLLKIISAYVMQDDLLFPMLTVEETLMFAAEFRLP-RSVT 79 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~~-~~~~ 79 (592)
++|+||||||||||||+|+|+++| .+|+|. .++.++||+|++.+++.+||+||+.++...... ....
T Consensus 34 ~~l~G~nGsGKSTLl~~l~Gl~~p--~~G~I~----------~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~ 101 (253)
T 2nq2_C 34 LAVLGQNGCGKSTLLDLLLGIHRP--IQGKIE----------VYQSIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKP 101 (253)
T ss_dssp EEEECCSSSSHHHHHHHHTTSSCC--SEEEEE----------ECSCEEEECSCCCCSSCCBHHHHHHGGGGGGSCTTCCC
T ss_pred EEEECCCCCCHHHHHHHHhCCCCC--CCcEEE----------EeccEEEEcCCCccCCCCCHHHHHHHhhhhhcccccCC
Confidence 489999999999999999999875 469998 235689999999999999999999986432110 0012
Q ss_pred HHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Q 048028 80 KTKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVNVLQRIAK 159 (592)
Q Consensus 80 ~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~la~ 159 (592)
..+.+++++++++.+||.+..++.++ .|||||||||+|||||+.+|++|+|||||+|||+.++..+.+.|+++++
T Consensus 102 ~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~ 176 (253)
T 2nq2_C 102 KSHDYQVAMQALDYLNLTHLAKREFT-----SLSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQ 176 (253)
T ss_dssp CHHHHHHHHHHHHHTTCGGGTTSBGG-----GSCHHHHHHHHHHHHHHTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCChHHhcCChh-----hCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH
Confidence 23446778999999999988776654 5999999999999999999999999999999999999999999999987
Q ss_pred c-CCEEEEEecCChhHHHhhhceEEEecCCeEeeecChhhH
Q 048028 160 S-GSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNETPSNL 199 (592)
Q Consensus 160 ~-g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~~~~ 199 (592)
+ |+|||+++|+++ ++.++||++++|++|+ ++.|+++++
T Consensus 177 ~~g~tvi~vtHd~~-~~~~~~d~v~~l~~G~-~~~g~~~~~ 215 (253)
T 2nq2_C 177 SQNMTVVFTTHQPN-QVVAIANKTLLLNKQN-FKFGETRNI 215 (253)
T ss_dssp TSCCEEEEEESCHH-HHHHHCSEEEEEETTE-EEEEEHHHH
T ss_pred hcCCEEEEEecCHH-HHHHhCCEEEEEeCCe-EecCCHHHH
Confidence 7 999999999987 5788999999999999 999988775
No 27
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=100.00 E-value=1.2e-40 Score=338.84 Aligned_cols=186 Identities=26% Similarity=0.366 Sum_probs=153.6
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCc---ccccceeEEEccCCCCCCCCCHHHHHHHHHHccCCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLES---KLLKIISAYVMQDDLLFPMLTVEETLMFAAEFRLPRS 77 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~---~~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~~~~ 77 (592)
++|+||||||||||||+|+|+++| .+|+|.++|+++.. ...++.++||+|++.+++ .||+||+.++....
T Consensus 48 ~~i~G~nGsGKSTLlk~l~Gl~~p--~~G~I~~~g~~i~~~~~~~~~~~i~~v~Q~~~l~~-~tv~enl~~~~~~~---- 120 (271)
T 2ixe_A 48 TALVGPNGSGKSTVAALLQNLYQP--TGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFG-RSFRENIAYGLTRT---- 120 (271)
T ss_dssp EEEECSTTSSHHHHHHHHTTSSCC--SEEEEEETTEEGGGBCHHHHHHHEEEECSSCCCCS-SBHHHHHHTTCSSC----
T ss_pred EEEECCCCCCHHHHHHHHhcCCCC--CCCEEEECCEEcccCCHHHHhccEEEEecCCcccc-ccHHHHHhhhcccC----
Confidence 489999999999999999999875 46999999998753 234567999999999887 59999998753211
Q ss_pred CCHHH-----HHHHHHHHHHHc--CCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHH
Q 048028 78 VTKTK-----KQERVEALINQL--GLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMV 150 (592)
Q Consensus 78 ~~~~~-----~~~~v~~~l~~l--gL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i 150 (592)
....+ .+..++++++.+ |+++..+.. +..|||||||||+|||||+.+|++|||||||+|||+.++..+
T Consensus 121 ~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~-----~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i 195 (271)
T 2ixe_A 121 PTMEEITAVAMESGAHDFISGFPQGYDTEVGET-----GNQLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRV 195 (271)
T ss_dssp CCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGG-----GTTSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHH
T ss_pred ChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCC-----cCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHH
Confidence 11011 123456778887 676665544 456999999999999999999999999999999999999999
Q ss_pred HHHHHHHHH-cCCEEEEEecCChhHHHhhhceEEEecCCeEeeecChhhHH
Q 048028 151 VNVLQRIAK-SGSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNETPSNLA 200 (592)
Q Consensus 151 ~~~l~~la~-~g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~~~~~ 200 (592)
++.|+++++ +|+|||++||+++ .+ ..||++++|++|+++..|+++++.
T Consensus 196 ~~~l~~~~~~~g~tviivtHd~~-~~-~~~d~v~~l~~G~i~~~g~~~~l~ 244 (271)
T 2ixe_A 196 QRLLYESPEWASRTVLLITQQLS-LA-ERAHHILFLKEGSVCEQGTHLQLM 244 (271)
T ss_dssp HHHHHHCTTTTTSEEEEECSCHH-HH-TTCSEEEEEETTEEEEEECHHHHH
T ss_pred HHHHHHHHhhcCCEEEEEeCCHH-HH-HhCCEEEEEECCEEEEECCHHHHH
Confidence 999999875 4899999999986 45 459999999999999999998774
No 28
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=100.00 E-value=2.9e-40 Score=331.71 Aligned_cols=185 Identities=28% Similarity=0.457 Sum_probs=155.2
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCc---ccccceeEEEccCCCCCCCCCHHHHHHHHHHccCCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLES---KLLKIISAYVMQDDLLFPMLTVEETLMFAAEFRLPRS 77 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~---~~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~~~~ 77 (592)
++|+||||||||||||+|+|+.+| .+|+|.++|+++.. ...++.++||+|++.+++ .||+||+.++. + .
T Consensus 38 ~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~l~~-~tv~enl~~~~----~-~ 109 (247)
T 2ff7_A 38 IGIVGRSGSGKSTLTKLIQRFYIP--ENGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLN-RSIIDNISLAN----P-G 109 (247)
T ss_dssp EEEECSTTSSHHHHHHHHTTSSCC--SEEEEEETTEETTTSCHHHHHHHEEEECSSCCCTT-SBHHHHHTTTC----T-T
T ss_pred EEEECCCCCCHHHHHHHHhcCCCC--CCcEEEECCEEhhhCCHHHHHhcEEEEeCCCcccc-ccHHHHHhccC----C-C
Confidence 489999999999999999999875 46999999998754 234567999999998887 59999998742 1 1
Q ss_pred CCHHHHHHHHHHHHHHcCCcccccccc------cCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHH
Q 048028 78 VTKTKKQERVEALINQLGLRSAAKTFI------GDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVV 151 (592)
Q Consensus 78 ~~~~~~~~~v~~~l~~lgL~~~~~~~v------g~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~ 151 (592)
.+ +++++++++.+++.+..++.. -++.+..|||||||||+|||||+.+|++|+|||||+|||+.++..++
T Consensus 110 ~~----~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL~~~p~lllLDEPts~LD~~~~~~i~ 185 (247)
T 2ff7_A 110 MS----VEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIM 185 (247)
T ss_dssp CC----HHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHH
T ss_pred CC----HHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHH
Confidence 11 245777888888876554432 12346789999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCEEEEEecCChhHHHhhhceEEEecCCeEeeecChhhHH
Q 048028 152 NVLQRIAKSGSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNETPSNLA 200 (592)
Q Consensus 152 ~~l~~la~~g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~~~~~ 200 (592)
+.|++++ +|+|||+++|+++. + +.||++++|++|++++.|+++++.
T Consensus 186 ~~l~~~~-~g~tviivtH~~~~-~-~~~d~v~~l~~G~i~~~g~~~~l~ 231 (247)
T 2ff7_A 186 RNMHKIC-KGRTVIIIAHRLST-V-KNADRIIVMEKGKIVEQGKHKELL 231 (247)
T ss_dssp HHHHHHH-TTSEEEEECSSGGG-G-TTSSEEEEEETTEEEEEECHHHHH
T ss_pred HHHHHHc-CCCEEEEEeCCHHH-H-HhCCEEEEEECCEEEEECCHHHHH
Confidence 9999995 69999999999873 4 569999999999999999998763
No 29
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=100.00 E-value=4.8e-40 Score=338.98 Aligned_cols=185 Identities=27% Similarity=0.455 Sum_probs=155.0
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCc---ccccceeEEEccCCCCCCCCCHHHHHHHHHHccCCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLES---KLLKIISAYVMQDDLLFPMLTVEETLMFAAEFRLPRS 77 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~---~~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~~~~ 77 (592)
+||+||||||||||+|+|+|+++| .+|+|.++|+++.. ..+++.++||+|++.+|+ .||+||+.++...
T Consensus 83 vaivG~sGsGKSTLl~ll~gl~~p--~~G~I~i~G~~i~~~~~~~~r~~i~~v~Q~~~lf~-~Tv~eNi~~~~~~----- 154 (306)
T 3nh6_A 83 LALVGPSGAGKSTILRLLFRFYDI--SSGCIRIDGQDISQVTQASLRSHIGVVPQDTVLFN-DTIADNIRYGRVT----- 154 (306)
T ss_dssp EEEESSSCHHHHHHHHHHTTSSCC--SEEEEEETTEETTSBCHHHHHHTEEEECSSCCCCS-EEHHHHHHTTSTT-----
T ss_pred EEEECCCCchHHHHHHHHHcCCCC--CCcEEEECCEEcccCCHHHHhcceEEEecCCccCc-ccHHHHHHhhccc-----
Confidence 589999999999999999999885 46999999999864 345677999999999986 5999999875321
Q ss_pred CCHHHHHHHHHHHHHHcCCcc-------cccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHH
Q 048028 78 VTKTKKQERVEALINQLGLRS-------AAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMV 150 (592)
Q Consensus 78 ~~~~~~~~~v~~~l~~lgL~~-------~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i 150 (592)
.. .++++++++..++.+ ..++.+| +.+..|||||||||+|||||+.+|+||||||||+|||+.+...+
T Consensus 155 ~~----~~~~~~~~~~~~l~~~i~~lp~gl~t~~~-~~g~~LSGGqrQRvaiARAL~~~p~iLlLDEPts~LD~~~~~~i 229 (306)
T 3nh6_A 155 AG----NDEVEAAAQAAGIHDAIMAFPEGYRTQVG-ERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAI 229 (306)
T ss_dssp CC----HHHHHHHHHHHTCHHHHHHSTTGGGCEES-TTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSSCCCHHHHHHH
T ss_pred CC----HHHHHHHHHHhCcHHHHHhccchhhhHhc-CCcCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHH
Confidence 12 233555666666544 3456665 45678999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCEEEEEecCChhHHHhhhceEEEecCCeEeeecChhhHHH
Q 048028 151 VNVLQRIAKSGSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNETPSNLAQ 201 (592)
Q Consensus 151 ~~~l~~la~~g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~~~~~~ 201 (592)
.+.|+++.+ ++|+|+++|+++ .+.. ||+|++|++|+++..|+++++.+
T Consensus 230 ~~~l~~l~~-~~Tvi~itH~l~-~~~~-aD~i~vl~~G~iv~~G~~~el~~ 277 (306)
T 3nh6_A 230 QASLAKVCA-NRTTIVVAHRLS-TVVN-ADQILVIKDGCIVERGRHEALLS 277 (306)
T ss_dssp HHHHHHHHT-TSEEEEECCSHH-HHHT-CSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHHHHHcC-CCEEEEEEcChH-HHHc-CCEEEEEECCEEEEECCHHHHHh
Confidence 999999864 789999999997 4554 99999999999999999988754
No 30
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=100.00 E-value=5.1e-40 Score=329.23 Aligned_cols=186 Identities=27% Similarity=0.431 Sum_probs=156.9
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCc---ccccceeEEEccCCCCCCCCCHHHHHHHHHHccCCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLES---KLLKIISAYVMQDDLLFPMLTVEETLMFAAEFRLPRS 77 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~---~~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~~~~ 77 (592)
++|+||||||||||||+|+|+.+|. +|+|.++|+++.. ...++.++||+|++.+++ .||+||+.++.. + .
T Consensus 31 ~~i~G~nGsGKSTLl~~l~Gl~~p~--~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~---~-~ 103 (243)
T 1mv5_A 31 IAFAGPSGGGKSTIFSLLERFYQPT--AGEITIDGQPIDNISLENWRSQIGFVSQDSAIMA-GTIRENLTYGLE---G-D 103 (243)
T ss_dssp EEEECCTTSSHHHHHHHHTTSSCCS--BSCEEETTEESTTTSCSCCTTTCCEECCSSCCCC-EEHHHHTTSCTT---S-C
T ss_pred EEEECCCCCCHHHHHHHHhcCCCCC--CcEEEECCEEhhhCCHHHHHhhEEEEcCCCcccc-ccHHHHHhhhcc---C-C
Confidence 4899999999999999999998754 6999999998753 235667899999999887 499999976421 1 1
Q ss_pred CCHHHHHHHHHHHHHHcCCccccccccc------CCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHH
Q 048028 78 VTKTKKQERVEALINQLGLRSAAKTFIG------DERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVV 151 (592)
Q Consensus 78 ~~~~~~~~~v~~~l~~lgL~~~~~~~vg------~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~ 151 (592)
.. +++++++++.+++.+..+.... ++.+..|||||||||+|||+|+.+|++|+|||||+|||+.++..++
T Consensus 104 ~~----~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~~~p~lllLDEPts~LD~~~~~~i~ 179 (243)
T 1mv5_A 104 YT----DEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQ 179 (243)
T ss_dssp SC----HHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHH
T ss_pred CC----HHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHH
Confidence 11 2457888999999876654321 2356789999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCEEEEEecCChhHHHhhhceEEEecCCeEeeecChhhHH
Q 048028 152 NVLQRIAKSGSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNETPSNLA 200 (592)
Q Consensus 152 ~~l~~la~~g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~~~~~ 200 (592)
+.|++++ +|+|||+++|+++ .+ ..||++++|++|+++..|+++++.
T Consensus 180 ~~l~~~~-~~~tvi~vtH~~~-~~-~~~d~v~~l~~G~i~~~g~~~~~~ 225 (243)
T 1mv5_A 180 KALDSLM-KGRTTLVIAHRLS-TI-VDADKIYFIEKGQITGSGKHNELV 225 (243)
T ss_dssp HHHHHHH-TTSEEEEECCSHH-HH-HHCSEEEEEETTEECCCSCHHHHH
T ss_pred HHHHHhc-CCCEEEEEeCChH-HH-HhCCEEEEEECCEEEEeCCHHHHH
Confidence 9999997 6999999999986 45 469999999999999999988764
No 31
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=1.6e-39 Score=328.71 Aligned_cols=179 Identities=20% Similarity=0.275 Sum_probs=155.5
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCcccccceeE-EEccCCCCCCCCCHHHHHHHHHHccCCCCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLESKLLKIISA-YVMQDDLLFPMLTVEETLMFAAEFRLPRSVT 79 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~~~~~~~~~-yv~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~ 79 (592)
++|+||||||||||||+|+|+. |. +|+|.++|+++.....++.++ |++|++.+ .+||+||+.+...++ ..
T Consensus 33 ~~i~G~NGsGKSTLlk~l~Gl~-p~--~G~I~~~g~~~~~~~~~~~i~~~v~Q~~~l--~~tv~enl~~~~~~~---~~- 103 (263)
T 2pjz_A 33 VIILGPNGSGKTTLLRAISGLL-PY--SGNIFINGMEVRKIRNYIRYSTNLPEAYEI--GVTVNDIVYLYEELK---GL- 103 (263)
T ss_dssp EEEECCTTSSHHHHHHHHTTSS-CC--EEEEEETTEEGGGCSCCTTEEECCGGGSCT--TSBHHHHHHHHHHHT---CC-
T ss_pred EEEECCCCCCHHHHHHHHhCCC-CC--CcEEEECCEECcchHHhhheEEEeCCCCcc--CCcHHHHHHHhhhhc---ch-
Confidence 4899999999999999999998 64 699999999875321255689 99999887 889999999876543 11
Q ss_pred HHHHHHHHHHHHHHcCCc-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 048028 80 KTKKQERVEALINQLGLR-SAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVNVLQRIA 158 (592)
Q Consensus 80 ~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~la 158 (592)
.+++++++++.+||+ +..++.++ .|||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|++++
T Consensus 104 ---~~~~~~~~l~~~gl~~~~~~~~~~-----~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~~~ 175 (263)
T 2pjz_A 104 ---DRDLFLEMLKALKLGEEILRRKLY-----KLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEYG 175 (263)
T ss_dssp ---CHHHHHHHHHHTTCCGGGGGSBGG-----GSCHHHHHHHHHHHHHHTCCSEEEEECTTTTCCHHHHHHHHHHHHHSC
T ss_pred ---HHHHHHHHHHHcCCChhHhcCChh-----hCCHHHHHHHHHHHHHHhCCCEEEEECCccccCHHHHHHHHHHHHHhc
Confidence 235688999999998 87766554 699999999999999999999999999999999999999999999885
Q ss_pred HcCCEEEEEecCChhHHHhhhc-eEEEecCCeEeeecChhhHH
Q 048028 159 KSGSIVIMSIHQPSYRILSLLD-RLIILSHGQSVYNETPSNLA 200 (592)
Q Consensus 159 ~~g~tvi~~~H~~~~~i~~~~D-~v~ll~~G~~v~~g~~~~~~ 200 (592)
+ |||++||+++ ++.++|| ++++|++|++++.|+++++.
T Consensus 176 ~---tviivtHd~~-~~~~~~d~~i~~l~~G~i~~~g~~~~l~ 214 (263)
T 2pjz_A 176 K---EGILVTHELD-MLNLYKEYKAYFLVGNRLQGPISVSELL 214 (263)
T ss_dssp S---EEEEEESCGG-GGGGCTTSEEEEEETTEEEEEEEHHHHH
T ss_pred C---cEEEEEcCHH-HHHHhcCceEEEEECCEEEEecCHHHHH
Confidence 4 9999999997 4778999 99999999999999998774
No 32
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=100.00 E-value=7.6e-40 Score=321.27 Aligned_cols=173 Identities=21% Similarity=0.313 Sum_probs=148.2
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCcccccceeEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCH
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLESKLLKIISAYVMQDDLLFPMLTVEETLMFAAEFRLPRSVTK 80 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~ 80 (592)
++|+||||||||||||+|+|+.+| .+|+|.++|+++. ..++.++||+|++.+++.+||+||+.+....+. ..
T Consensus 38 ~~iiG~NGsGKSTLlk~l~Gl~~p--~~G~I~~~g~~~~--~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~---~~- 109 (214)
T 1sgw_A 38 VNFHGPNGIGKTTLLKTISTYLKP--LKGEIIYNGVPIT--KVKGKIFFLPEEIIVPRKISVEDYLKAVASLYG---VK- 109 (214)
T ss_dssp EEEECCTTSSHHHHHHHHTTSSCC--SEEEEEETTEEGG--GGGGGEEEECSSCCCCTTSBHHHHHHHHHHHTT---CC-
T ss_pred EEEECCCCCCHHHHHHHHhcCCCC--CCeEEEECCEEhh--hhcCcEEEEeCCCcCCCCCCHHHHHHHHHHhcC---Cc-
Confidence 489999999999999999999875 4699999999876 356779999999999999999999998765431 11
Q ss_pred HHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc
Q 048028 81 TKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVNVLQRIAKS 160 (592)
Q Consensus 81 ~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~la~~ 160 (592)
.+ +++++++++.+||++. +..+ ..|||||||||+||++|+.+|++|+|||||+|||+.++..+++.|++++++
T Consensus 110 ~~-~~~~~~~l~~~gl~~~-~~~~-----~~LSgGqkqrv~laraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~ 182 (214)
T 1sgw_A 110 VN-KNEIMDALESVEVLDL-KKKL-----GELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKE 182 (214)
T ss_dssp CC-HHHHHHHHHHTTCCCT-TSBG-----GGSCHHHHHHHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHH
T ss_pred hH-HHHHHHHHHHcCCCcC-CCCh-----hhCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHHhC
Confidence 12 4678899999999876 6554 469999999999999999999999999999999999999999999999877
Q ss_pred CCEEEEEecCChhHHHhhhceEEEecCCeE
Q 048028 161 GSIVIMSIHQPSYRILSLLDRLIILSHGQS 190 (592)
Q Consensus 161 g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~ 190 (592)
|+|||++||+++ ++..++|+++++ +|++
T Consensus 183 g~tiiivtHd~~-~~~~~~d~v~~~-~~~~ 210 (214)
T 1sgw_A 183 KGIVIISSREEL-SYCDVNENLHKY-STKI 210 (214)
T ss_dssp HSEEEEEESSCC-TTSSEEEEGGGG-BC--
T ss_pred CCEEEEEeCCHH-HHHHhCCEEEEe-CCcc
Confidence 899999999998 578888988865 4443
No 33
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=100.00 E-value=7e-39 Score=324.00 Aligned_cols=183 Identities=27% Similarity=0.471 Sum_probs=152.4
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCc---ccccceeEEEccCCCCCCCCCHHHHHHHHHHccCCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLES---KLLKIISAYVMQDDLLFPMLTVEETLMFAAEFRLPRS 77 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~---~~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~~~~ 77 (592)
++|+||||||||||||+|+|+++ + +|+|.++|+++.. ...++.++||+|++.+++ .||+||+.++.. .
T Consensus 49 ~~i~G~nGsGKSTLl~~l~Gl~~--~-~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~l~~-~tv~enl~~~~~-----~ 119 (260)
T 2ghi_A 49 CALVGHTGSGKSTIAKLLYRFYD--A-EGDIKIGGKNVNKYNRNSIRSIIGIVPQDTILFN-ETIKYNILYGKL-----D 119 (260)
T ss_dssp EEEECSTTSSHHHHHHHHTTSSC--C-EEEEEETTEEGGGBCHHHHHTTEEEECSSCCCCS-EEHHHHHHTTCT-----T
T ss_pred EEEECCCCCCHHHHHHHHhccCC--C-CeEEEECCEEhhhcCHHHHhccEEEEcCCCcccc-cCHHHHHhccCC-----C
Confidence 58999999999999999999986 3 6999999998753 234567999999999886 599999987421 1
Q ss_pred CCHHHHHHHHHHHHHHcCCccc-------ccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHH
Q 048028 78 VTKTKKQERVEALINQLGLRSA-------AKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMV 150 (592)
Q Consensus 78 ~~~~~~~~~v~~~l~~lgL~~~-------~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i 150 (592)
.. ++++.++++.+++.+. .++.++ +.+..|||||||||+|||||+.+|++|||||||+|||+.++..+
T Consensus 120 ~~----~~~~~~~l~~~~l~~~~~~l~~~~~~~~~-~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i 194 (260)
T 2ghi_A 120 AT----DEEVIKATKSAQLYDFIEALPKKWDTIVG-NKGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLF 194 (260)
T ss_dssp CC----HHHHHHHHHHTTCHHHHHTSTTGGGCEES-SSSBCCCHHHHHHHHHHHHHHHCCSEEEEECCCCTTCHHHHHHH
T ss_pred CC----HHHHHHHHHHhCCHHHHHhcccccccccc-CCcCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHH
Confidence 11 2345667777776543 344443 45678999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCEEEEEecCChhHHHhhhceEEEecCCeEeeecChhhHH
Q 048028 151 VNVLQRIAKSGSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNETPSNLA 200 (592)
Q Consensus 151 ~~~l~~la~~g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~~~~~ 200 (592)
++.|+++++ |+|||+++|+++. + ..||++++|++|+++..|+++++.
T Consensus 195 ~~~l~~l~~-~~tviivtH~~~~-~-~~~d~i~~l~~G~i~~~g~~~~l~ 241 (260)
T 2ghi_A 195 QKAVEDLRK-NRTLIIIAHRLST-I-SSAESIILLNKGKIVEKGTHKDLL 241 (260)
T ss_dssp HHHHHHHTT-TSEEEEECSSGGG-S-TTCSEEEEEETTEEEEEECHHHHH
T ss_pred HHHHHHhcC-CCEEEEEcCCHHH-H-HhCCEEEEEECCEEEEECCHHHHH
Confidence 999999964 8999999999973 4 569999999999999999998764
No 34
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=100.00 E-value=9.8e-38 Score=309.88 Aligned_cols=173 Identities=25% Similarity=0.435 Sum_probs=140.9
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCcccccceeEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCH
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLESKLLKIISAYVMQDDLLFPMLTVEETLMFAAEFRLPRSVTK 80 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~ 80 (592)
++|+||||||||||||+|+|+++| .+|+|.++| .++|++|++.+++. ||+||+.++.. ...
T Consensus 37 ~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g----------~i~~v~q~~~~~~~-tv~enl~~~~~------~~~ 97 (229)
T 2pze_A 37 LAVAGSTGAGKTSLLMMIMGELEP--SEGKIKHSG----------RISFCSQFSWIMPG-TIKENIIFGVS------YDE 97 (229)
T ss_dssp EEEECCTTSSHHHHHHHHTTSSCC--SEEEEEECS----------CEEEECSSCCCCSB-CHHHHHHTTSC------CCH
T ss_pred EEEECCCCCCHHHHHHHHhCCCcC--CccEEEECC----------EEEEEecCCcccCC-CHHHHhhccCC------cCh
Confidence 489999999999999999999875 469999998 37999999999886 99999987421 111
Q ss_pred HHHHHHHHHHHHHcCCcccc-------cccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHH
Q 048028 81 TKKQERVEALINQLGLRSAA-------KTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVNV 153 (592)
Q Consensus 81 ~~~~~~v~~~l~~lgL~~~~-------~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~ 153 (592)
.+++++++.+++.+.. ++.++ +.+..|||||||||+|||+|+.+|++|+|||||+|||+.++..+++.
T Consensus 98 ----~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~LSgGqkqrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~ 172 (229)
T 2pze_A 98 ----YRYRSVIKACQLEEDISKFAEKDNIVLG-EGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFES 172 (229)
T ss_dssp ----HHHHHHHHHTTCHHHHTTSTTGGGSCBC-TTCTTSCHHHHHHHHHHHHHHSCCSEEEEESTTTTSCHHHHHHHHHH
T ss_pred ----HHHHHHHHHhCcHHHHHhCccccccccc-CCCCcCCHHHHHHHHHHHHHhcCCCEEEEECcccCCCHHHHHHHHHH
Confidence 1234455555554332 22332 34678999999999999999999999999999999999999999997
Q ss_pred -HHHHHHcCCEEEEEecCChhHHHhhhceEEEecCCeEeeecChhhHH
Q 048028 154 -LQRIAKSGSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNETPSNLA 200 (592)
Q Consensus 154 -l~~la~~g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~~~~~ 200 (592)
++++. +|+|||+++|+++ .+ ..||++++|++|+++..|+++++.
T Consensus 173 l~~~~~-~~~tvi~vtH~~~-~~-~~~d~v~~l~~G~i~~~g~~~~~~ 217 (229)
T 2pze_A 173 CVCKLM-ANKTRILVTSKME-HL-KKADKILILHEGSSYFYGTFSELQ 217 (229)
T ss_dssp CCCCCT-TTSEEEEECCCHH-HH-HHCSEEEEEETTEEEEEECHHHHH
T ss_pred HHHHhh-CCCEEEEEcCChH-HH-HhCCEEEEEECCEEEEECCHHHHH
Confidence 46664 4899999999986 45 469999999999999999988764
No 35
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=100.00 E-value=2.4e-38 Score=336.22 Aligned_cols=183 Identities=20% Similarity=0.344 Sum_probs=154.8
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCcc---cccceeEEEccCCCCCCCCCHHHHHHHHHHccCCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLESK---LLKIISAYVMQDDLLFPMLTVEETLMFAAEFRLPRS 77 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~~---~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~~~~ 77 (592)
++|+||||||||||||+|+|+.+ .+|+|.++|++++.. ..++.++||+|+..+|+ +||+||+.+.. .
T Consensus 50 ~~llGpsGsGKSTLLr~iaGl~~---~~G~I~i~G~~i~~~~~~~~rr~ig~v~Q~~~lf~-~tv~enl~~~~------~ 119 (390)
T 3gd7_A 50 VGLLGRTGSGKSTLLSAFLRLLN---TEGEIQIDGVSWDSITLEQWRKAFGVIPQKVFIFS-GTFRKNLDPNA------A 119 (390)
T ss_dssp EEEEESTTSSHHHHHHHHHTCSE---EEEEEEESSCBTTSSCHHHHHHTEEEESCCCCCCS-EEHHHHHCTTC------C
T ss_pred EEEECCCCChHHHHHHHHhCCCC---CCeEEEECCEECCcCChHHHhCCEEEEcCCcccCc-cCHHHHhhhcc------c
Confidence 48999999999999999999975 469999999988642 34577999999999998 59999995321 1
Q ss_pred CCHHHHHHHHHHHHHHcCCcccccccccC------CCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHH
Q 048028 78 VTKTKKQERVEALINQLGLRSAAKTFIGD------ERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVV 151 (592)
Q Consensus 78 ~~~~~~~~~v~~~l~~lgL~~~~~~~vg~------~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~ 151 (592)
. .+++++++++.++|.+..+.+... +....|||||||||+|||||+.+|++|||||||||||+..+.++.
T Consensus 120 ~----~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL~~~P~lLLLDEPts~LD~~~~~~l~ 195 (390)
T 3gd7_A 120 H----SDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIR 195 (390)
T ss_dssp S----CHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHHHTTCCEEEEESHHHHSCHHHHHHHH
T ss_pred c----CHHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHH
Confidence 1 235688899999998877655431 223349999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCEEEEEecCChhHHHhhhceEEEecCCeEeeecChhhHH
Q 048028 152 NVLQRIAKSGSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNETPSNLA 200 (592)
Q Consensus 152 ~~l~~la~~g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~~~~~ 200 (592)
+.|+++. +++|+|+++|+++ ....||||++|++|+++..|+++++.
T Consensus 196 ~~l~~~~-~~~tvi~vtHd~e--~~~~aDri~vl~~G~i~~~g~~~el~ 241 (390)
T 3gd7_A 196 RTLKQAF-ADCTVILCEARIE--AMLECDQFLVIEENKVRQYDSILELY 241 (390)
T ss_dssp HHHHTTT-TTSCEEEECSSSG--GGTTCSEEEEEETTEEEEESSHHHHH
T ss_pred HHHHHHh-CCCEEEEEEcCHH--HHHhCCEEEEEECCEEEEECCHHHHH
Confidence 9999864 4789999999975 45679999999999999999999874
No 36
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=100.00 E-value=2.3e-37 Score=308.74 Aligned_cols=176 Identities=24% Similarity=0.439 Sum_probs=138.7
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCcccccceeEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCH
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLESKLLKIISAYVMQDDLLFPMLTVEETLMFAAEFRLPRSVTK 80 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~ 80 (592)
++|+||||||||||||+|+|+++| .+|+|.++| .++||+|++.+ +.+||+||+.+.... ..
T Consensus 34 ~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~I~~~g----------~i~~v~Q~~~~-~~~tv~enl~~~~~~------~~ 94 (237)
T 2cbz_A 34 VAVVGQVGCGKSSLLSALLAEMDK--VEGHVAIKG----------SVAYVPQQAWI-QNDSLRENILFGCQL------EE 94 (237)
T ss_dssp EEEECSTTSSHHHHHHHHTTCSEE--EEEEEEECS----------CEEEECSSCCC-CSEEHHHHHHTTSCC------CT
T ss_pred EEEECCCCCCHHHHHHHHhcCCCC--CCceEEECC----------EEEEEcCCCcC-CCcCHHHHhhCcccc------CH
Confidence 489999999999999999999874 569999998 28999999865 578999999875321 11
Q ss_pred HHHHHHHHH---HHHHcCCccc-ccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHH-
Q 048028 81 TKKQERVEA---LINQLGLRSA-AKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVNVLQ- 155 (592)
Q Consensus 81 ~~~~~~v~~---~l~~lgL~~~-~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~- 155 (592)
+. .+++.+ +.+.+++.+. .++.+ ++.+..|||||||||+|||||+.+|++|+|||||+|||+.++..+++.|+
T Consensus 95 ~~-~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~ 172 (237)
T 2cbz_A 95 PY-YRSVIQACALLPDLEILPSGDRTEI-GEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIG 172 (237)
T ss_dssp TH-HHHHHHHTTCHHHHTTSTTGGGSEE-STTSBCCCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHTTS
T ss_pred HH-HHHHHHHHhhHHHHHhccccccccc-cCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHH
Confidence 11 111111 2233333221 12233 34567899999999999999999999999999999999999999999995
Q ss_pred --HHHHcCCEEEEEecCChhHHHhhhceEEEecCCeEeeecChhhHH
Q 048028 156 --RIAKSGSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNETPSNLA 200 (592)
Q Consensus 156 --~la~~g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~~~~~ 200 (592)
+++ +|+|||++||+++. + ..||++++|++|+++..|+++++.
T Consensus 173 ~~~~~-~~~tviivtH~~~~-~-~~~d~v~~l~~G~i~~~g~~~~~~ 216 (237)
T 2cbz_A 173 PKGML-KNKTRILVTHSMSY-L-PQVDVIIVMSGGKISEMGSYQELL 216 (237)
T ss_dssp TTSTT-TTSEEEEECSCSTT-G-GGSSEEEEEETTEEEEEECHHHHH
T ss_pred HHhhc-CCCEEEEEecChHH-H-HhCCEEEEEeCCEEEEeCCHHHHh
Confidence 443 48999999999974 4 579999999999999999998764
No 37
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=100.00 E-value=3.4e-37 Score=346.76 Aligned_cols=187 Identities=26% Similarity=0.464 Sum_probs=157.2
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCc---ccccceeEEEccCCCCCCCCCHHHHHHHHHHccCCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLES---KLLKIISAYVMQDDLLFPMLTVEETLMFAAEFRLPRS 77 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~---~~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~~~~ 77 (592)
+||+||||||||||+|+|+|+.+| .+|+|.+||+++.+ ...++.++||+|++.+++. ||+||+.++...+ ..
T Consensus 373 ~~ivG~sGsGKSTLl~~l~g~~~p--~~G~i~~~g~~i~~~~~~~~~~~i~~v~Q~~~l~~~-tv~eni~~~~~~~--~~ 447 (595)
T 2yl4_A 373 TALVGPSGSGKSTVLSLLLRLYDP--ASGTISLDGHDIRQLNPVWLRSKIGTVSQEPILFSC-SIAENIAYGADDP--SS 447 (595)
T ss_dssp EEEECCTTSSSTHHHHHHTTSSCC--SEEEEEETTEETTTBCHHHHHHSEEEECSSCCCCSS-BHHHHHHTTSSST--TT
T ss_pred EEEECCCCCCHHHHHHHHhcCcCC--CCcEEEECCEEhhhCCHHHHHhceEEEccCCcccCC-CHHHHHhhcCCCc--cc
Confidence 589999999999999999999875 46999999999854 3356779999999999875 9999998853210 01
Q ss_pred CCHHHHHHHHHHHHHHcCCcc-------cccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHH
Q 048028 78 VTKTKKQERVEALINQLGLRS-------AAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMV 150 (592)
Q Consensus 78 ~~~~~~~~~v~~~l~~lgL~~-------~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i 150 (592)
. .+++++++++.+++.+ ..|+.+|+ .+.+||||||||++|||||+++|++|+|||||+|||+.++..+
T Consensus 448 ~----~~~~~~~~~~~~~l~~~~~~l~~g~~~~~~~-~~~~LSgGq~qrv~iAral~~~p~illlDEpts~LD~~~~~~i 522 (595)
T 2yl4_A 448 V----TAEEIQRVAEVANAVAFIRNFPQGFNTVVGE-KGVLLSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLV 522 (595)
T ss_dssp S----CHHHHHHHHHHTTCHHHHHTSSSGGGCBCSS-SSCCCCHHHHHHHHHHHHHHHCCSEEEEECCCSSCCHHHHHHH
T ss_pred c----CHHHHHHHHHHcCCHHHHHhCcccccccccC-CCCcCCHHHHHHHHHHHHHHcCCCEEEEECcccCCCHHHHHHH
Confidence 1 2356788888888754 35677764 4678999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCEEEEEecCChhHHHhhhceEEEecCCeEeeecChhhHH
Q 048028 151 VNVLQRIAKSGSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNETPSNLA 200 (592)
Q Consensus 151 ~~~l~~la~~g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~~~~~ 200 (592)
.+.|+++.+ |+|+|+++|+++ .+ +.|||+++|++|+++..|+++++.
T Consensus 523 ~~~l~~~~~-~~tvi~itH~~~-~~-~~~d~i~~l~~G~i~~~g~~~~l~ 569 (595)
T 2yl4_A 523 QEALDRLMD-GRTVLVIAHRLS-TI-KNANMVAVLDQGKITEYGKHEELL 569 (595)
T ss_dssp HHHHHHHHT-TSEEEEECCCHH-HH-HHSSEEEEEETTEEEEEECSCC--
T ss_pred HHHHHHHhc-CCEEEEEecCHH-HH-HcCCEEEEEECCEEEEECCHHHHH
Confidence 999999976 899999999987 35 569999999999999999998874
No 38
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=100.00 E-value=5.7e-37 Score=344.07 Aligned_cols=186 Identities=27% Similarity=0.392 Sum_probs=158.3
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCc---ccccceeEEEccCCCCCCCCCHHHHHHHHHHccCCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLES---KLLKIISAYVMQDDLLFPMLTVEETLMFAAEFRLPRS 77 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~---~~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~~~~ 77 (592)
+||+||||||||||+|+|+|+.+| .+|+|.+||+++.+ ...++.++||+|++.+++. ||+||+.++.. + .
T Consensus 372 ~~ivG~sGsGKSTLl~~l~g~~~p--~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~-tv~eni~~~~~---~-~ 444 (582)
T 3b60_A 372 VALVGRSGSGKSTIASLITRFYDI--DEGHILMDGHDLREYTLASLRNQVALVSQNVHLFND-TVANNIAYART---E-E 444 (582)
T ss_dssp EEEEECTTSSHHHHHHHHTTTTCC--SEEEEEETTEETTTBCHHHHHHTEEEECSSCCCCSS-BHHHHHHTTTT---S-C
T ss_pred EEEECCCCCCHHHHHHHHhhccCC--CCCeEEECCEEccccCHHHHHhhCeEEccCCcCCCC-CHHHHHhccCC---C-C
Confidence 589999999999999999999875 46999999999854 2356679999999999985 99999987531 1 1
Q ss_pred CCHHHHHHHHHHHHHHcCCccc-------ccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHH
Q 048028 78 VTKTKKQERVEALINQLGLRSA-------AKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMV 150 (592)
Q Consensus 78 ~~~~~~~~~v~~~l~~lgL~~~-------~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i 150 (592)
.+ +++++++++.+++.+. .|+.+|+ .+..||||||||++|||||+++|++|+|||||||||+.++..+
T Consensus 445 ~~----~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~-~~~~LSgGq~qrl~iAral~~~p~illlDEpts~LD~~~~~~i 519 (582)
T 3b60_A 445 YS----REQIEEAARMAYAMDFINKMDNGLDTIIGE-NGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAI 519 (582)
T ss_dssp CC----HHHHHHHHHTTTCHHHHHHSTTGGGSBCCT-TSCSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHH
T ss_pred CC----HHHHHHHHHHcCCHHHHHhccccccccccC-CCCCCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHH
Confidence 22 3457778888887653 4566654 5678999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCEEEEEecCChhHHHhhhceEEEecCCeEeeecChhhHHH
Q 048028 151 VNVLQRIAKSGSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNETPSNLAQ 201 (592)
Q Consensus 151 ~~~l~~la~~g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~~~~~~ 201 (592)
.+.|+++.+ |+|+|+++|+++. + +.|||+++|++|+++..|+++++.+
T Consensus 520 ~~~l~~~~~-~~tvi~itH~~~~-~-~~~d~i~~l~~G~i~~~g~~~~l~~ 567 (582)
T 3b60_A 520 QAALDELQK-NRTSLVIAHRLST-I-EQADEIVVVEDGIIVERGTHSELLA 567 (582)
T ss_dssp HHHHHHHHT-TSEEEEECSCGGG-T-TTCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHHHHHhC-CCEEEEEeccHHH-H-HhCCEEEEEECCEEEEecCHHHHHH
Confidence 999999965 8999999999973 4 5799999999999999999988753
No 39
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=100.00 E-value=5.5e-37 Score=344.21 Aligned_cols=185 Identities=29% Similarity=0.449 Sum_probs=157.4
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCc---ccccceeEEEccCCCCCCCCCHHHHHHHHHHccCCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLES---KLLKIISAYVMQDDLLFPMLTVEETLMFAAEFRLPRS 77 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~---~~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~~~~ 77 (592)
+||+||||||||||+|+|+|+.+|. +|+|.+||+++.+ ...++.++||+|++.+++. ||+||+.++.. + .
T Consensus 372 ~~ivG~sGsGKSTll~~l~g~~~p~--~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~-tv~eni~~~~~---~-~ 444 (582)
T 3b5x_A 372 VALVGRSGSGKSTIANLFTRFYDVD--SGSICLDGHDVRDYKLTNLRRHFALVSQNVHLFND-TIANNIAYAAE---G-E 444 (582)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCCC--CCEEEECCEEhhhCCHHHHhcCeEEEcCCCccccc-cHHHHHhccCC---C-C
Confidence 5899999999999999999998864 5999999998753 3456789999999999985 99999987531 1 1
Q ss_pred CCHHHHHHHHHHHHHHcCCccc-------ccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHH
Q 048028 78 VTKTKKQERVEALINQLGLRSA-------AKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMV 150 (592)
Q Consensus 78 ~~~~~~~~~v~~~l~~lgL~~~-------~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i 150 (592)
.+ +++++++++.+++.+. .||.+|+ ....||||||||++|||||+++|++|+|||||+|||+.++..+
T Consensus 445 ~~----~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~-~~~~LSgGq~qr~~iAral~~~p~illlDEpts~LD~~~~~~i 519 (582)
T 3b5x_A 445 YT----REQIEQAARQAHAMEFIENMPQGLDTVIGE-NGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAI 519 (582)
T ss_pred CC----HHHHHHHHHHCCCHHHHHhCcccccchhcC-CCCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHH
Confidence 12 3457788888887654 3555653 5678999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCEEEEEecCChhHHHhhhceEEEecCCeEeeecChhhHH
Q 048028 151 VNVLQRIAKSGSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNETPSNLA 200 (592)
Q Consensus 151 ~~~l~~la~~g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~~~~~ 200 (592)
.+.|+++.+ |+|+|+++|+++ .+ +.|||+++|++|+++..|+++++.
T Consensus 520 ~~~l~~~~~-~~tvi~itH~~~-~~-~~~d~i~~l~~G~i~~~g~~~~l~ 566 (582)
T 3b5x_A 520 QAALDELQK-NKTVLVIAHRLS-TI-EQADEILVVDEGEIIERGRHADLL 566 (582)
T ss_pred HHHHHHHcC-CCEEEEEecCHH-HH-HhCCEEEEEECCEEEEECCHHHHH
Confidence 999999864 899999999987 34 579999999999999999998874
No 40
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=100.00 E-value=6.6e-37 Score=343.19 Aligned_cols=185 Identities=28% Similarity=0.467 Sum_probs=155.2
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCc---ccccceeEEEccCCCCCCCCCHHHHHHHHHHccCCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLES---KLLKIISAYVMQDDLLFPMLTVEETLMFAAEFRLPRS 77 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~---~~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~~~~ 77 (592)
+||+||||||||||+|+|+|+.+| .+|+|.+||+++.. ...++.++||+|++.+++. ||+||+.++. + .
T Consensus 370 ~~ivG~sGsGKSTll~~l~g~~~p--~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~-tv~eni~~~~----~-~ 441 (578)
T 4a82_A 370 VAFVGMSGGGKSTLINLIPRFYDV--TSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSD-TVKENILLGR----P-T 441 (578)
T ss_dssp EEEECSTTSSHHHHHTTTTTSSCC--SEEEEEETTEEGGGSCHHHHHHTEEEECSSCCCCSS-BHHHHHGGGC----S-S
T ss_pred EEEECCCCChHHHHHHHHhcCCCC--CCcEEEECCEEhhhCCHHHHhhheEEEeCCCccCcc-cHHHHHhcCC----C-C
Confidence 589999999999999999999885 46999999999864 3456779999999999987 9999998752 1 1
Q ss_pred CCHHHHHHHHHHHHHHcCCc-------ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHH
Q 048028 78 VTKTKKQERVEALINQLGLR-------SAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMV 150 (592)
Q Consensus 78 ~~~~~~~~~v~~~l~~lgL~-------~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i 150 (592)
.++ +++.+.++..++. +..||.+| +.+.+||||||||++|||||+++|++|+|||||||||+.++..+
T Consensus 442 ~~~----~~~~~~~~~~~~~~~~~~lp~g~~t~~~-~~g~~LSgGq~Qrv~lAral~~~p~illlDEpts~LD~~~~~~i 516 (578)
T 4a82_A 442 ATD----EEVVEAAKMANAHDFIMNLPQGYDTEVG-ERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESII 516 (578)
T ss_dssp CCH----HHHHHHHHHTTCHHHHHTSTTGGGCBCC-GGGTTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHH
T ss_pred CCH----HHHHHHHHHhCcHHHHHhCcchhhhhhc-cCCCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHH
Confidence 122 3455556655553 34567776 45668999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCEEEEEecCChhHHHhhhceEEEecCCeEeeecChhhHHH
Q 048028 151 VNVLQRIAKSGSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNETPSNLAQ 201 (592)
Q Consensus 151 ~~~l~~la~~g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~~~~~~ 201 (592)
.+.++++. +++|+|+++|+++. + +.|||+++|++|+++..|+++|+.+
T Consensus 517 ~~~l~~~~-~~~t~i~itH~l~~-~-~~~d~i~~l~~G~i~~~g~~~el~~ 564 (578)
T 4a82_A 517 QEALDVLS-KDRTTLIVAHRLST-I-THADKIVVIENGHIVETGTHRELIA 564 (578)
T ss_dssp HHHHHHHT-TTSEEEEECSSGGG-T-TTCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHHHHHc-CCCEEEEEecCHHH-H-HcCCEEEEEECCEEEEECCHHHHHh
Confidence 99999985 47899999999984 4 5699999999999999999998753
No 41
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=8.6e-37 Score=342.59 Aligned_cols=185 Identities=25% Similarity=0.394 Sum_probs=153.8
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCc---ccccceeEEEccCCCCCCCCCHHHHHHHHHHccCCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLES---KLLKIISAYVMQDDLLFPMLTVEETLMFAAEFRLPRS 77 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~---~~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~~~~ 77 (592)
+||+||||||||||+|+|+|+++| .+|+|.+||+++.. ...++.++||+|++.+++. ||+||+.++.. .
T Consensus 372 ~~ivG~sGsGKSTll~~l~g~~~~--~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~-tv~eni~~~~~-----~ 443 (587)
T 3qf4_A 372 VAVLGETGSGKSTLMNLIPRLIDP--ERGRVEVDELDVRTVKLKDLRGHISAVPQETVLFSG-TIKENLKWGRE-----D 443 (587)
T ss_dssp EEEECSSSSSHHHHHHTTTTSSCC--SEEEEEESSSBGGGBCHHHHHHHEEEECSSCCCCSE-EHHHHHTTTCS-----S
T ss_pred EEEECCCCCCHHHHHHHHhCCccC--CCcEEEECCEEcccCCHHHHHhheEEECCCCcCcCc-cHHHHHhccCC-----C
Confidence 589999999999999999999885 46999999998864 3456779999999999976 99999976421 1
Q ss_pred CCHHHHHHHHHHHHHHcCC-------cccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHH
Q 048028 78 VTKTKKQERVEALINQLGL-------RSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMV 150 (592)
Q Consensus 78 ~~~~~~~~~v~~~l~~lgL-------~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i 150 (592)
.++ +++.+.++..++ .+..|+.+| +.+.+||||||||++|||||+++|++|+||||||+||+.++.++
T Consensus 444 ~~~----~~~~~~~~~~~~~~~i~~l~~g~~~~~~-~~~~~LSgGqrQrv~lARal~~~p~illlDEpts~LD~~~~~~i 518 (587)
T 3qf4_A 444 ATD----DEIVEAAKIAQIHDFIISLPEGYDSRVE-RGGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRI 518 (587)
T ss_dssp CCH----HHHHHHHHHTTCHHHHHTSSSGGGCEEC-SSSCSSCHHHHHHHHHHHHHHTCCSEEEEESCCTTSCHHHHHHH
T ss_pred CCH----HHHHHHHHHhCcHHHHHhcccchhhHhc-CCCCCcCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHH
Confidence 222 223334444443 334567775 45678999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCEEEEEecCChhHHHhhhceEEEecCCeEeeecChhhHHH
Q 048028 151 VNVLQRIAKSGSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNETPSNLAQ 201 (592)
Q Consensus 151 ~~~l~~la~~g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~~~~~~ 201 (592)
.+.|+++. +|+|+|+++|+++. ...||||++|++|++++.|+++|+.+
T Consensus 519 ~~~l~~~~-~~~tvi~itH~l~~--~~~~d~i~vl~~G~i~~~g~~~el~~ 566 (587)
T 3qf4_A 519 LDGLKRYT-KGCTTFIITQKIPT--ALLADKILVLHEGKVAGFGTHKELLE 566 (587)
T ss_dssp HHHHHHHS-TTCEEEEEESCHHH--HTTSSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHHHHhC-CCCEEEEEecChHH--HHhCCEEEEEECCEEEEECCHHHHHh
Confidence 99999985 58999999999973 46899999999999999999998854
No 42
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=1.1e-36 Score=342.71 Aligned_cols=185 Identities=25% Similarity=0.413 Sum_probs=153.1
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCc---ccccceeEEEccCCCCCCCCCHHHHHHHHHHccCCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLES---KLLKIISAYVMQDDLLFPMLTVEETLMFAAEFRLPRS 77 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~---~~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~~~~ 77 (592)
+||+||||||||||+|+|+|+.+| .+|+|.+||+++.. ...++.++||+|++.+++. ||+||+.++. + .
T Consensus 384 ~~ivG~sGsGKSTll~~l~g~~~p--~~G~i~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~-tv~eni~~~~----~-~ 455 (598)
T 3qf4_B 384 VALVGPTGSGKTTIVNLLMRFYDV--DRGQILVDGIDIRKIKRSSLRSSIGIVLQDTILFST-TVKENLKYGN----P-G 455 (598)
T ss_dssp EEEECCTTSSTTHHHHHHTTSSCC--SEEEEEETTEEGGGSCHHHHHHHEEEECTTCCCCSS-BHHHHHHSSS----T-T
T ss_pred EEEECCCCCcHHHHHHHHhcCcCC--CCeEEEECCEEhhhCCHHHHHhceEEEeCCCccccc-cHHHHHhcCC----C-C
Confidence 589999999999999999999885 46999999999864 3456789999999999875 9999998742 1 1
Q ss_pred CCHHHHHHHHHHHHHHcCCcc-------cccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHH
Q 048028 78 VTKTKKQERVEALINQLGLRS-------AAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMV 150 (592)
Q Consensus 78 ~~~~~~~~~v~~~l~~lgL~~-------~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i 150 (592)
.++ ++++++++..++.+ ..|+.+| +....||||||||++|||||+.+|++|+||||||+||+.++..+
T Consensus 456 ~~~----~~~~~~~~~~~~~~~~~~~~~g~~t~~~-~~g~~LSgGq~Qrv~iAral~~~p~illlDEpts~LD~~~~~~i 530 (598)
T 3qf4_B 456 ATD----EEIKEAAKLTHSDHFIKHLPEGYETVLT-DNGEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSI 530 (598)
T ss_dssp CCT----THHHHHTTTTTCHHHHHTSTTGGGCBCH-HHHTTSCHHHHHHHHHHHHHHTCCSEEEECCCCTTCCHHHHHHH
T ss_pred CCH----HHHHHHHHHhCCHHHHHhccccccchhc-CCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHH
Confidence 122 23445555555433 3455555 34567999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCEEEEEecCChhHHHhhhceEEEecCCeEeeecChhhHHH
Q 048028 151 VNVLQRIAKSGSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNETPSNLAQ 201 (592)
Q Consensus 151 ~~~l~~la~~g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~~~~~~ 201 (592)
.+.|+++. +|+|+|+++|+++ .+ +.||+|++|++|+++..|+++++.+
T Consensus 531 ~~~l~~~~-~~~t~i~itH~l~-~~-~~~d~i~~l~~G~i~~~g~~~~l~~ 578 (598)
T 3qf4_B 531 QAAMWKLM-EGKTSIIIAHRLN-TI-KNADLIIVLRDGEIVEMGKHDELIQ 578 (598)
T ss_dssp HHHHHHHH-TTSEEEEESCCTT-HH-HHCSEEEEECSSSEEECSCHHHHHH
T ss_pred HHHHHHHc-CCCEEEEEecCHH-HH-HcCCEEEEEECCEEEEECCHHHHHh
Confidence 99999985 5899999999998 35 4599999999999999999998753
No 43
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=100.00 E-value=9.2e-36 Score=305.27 Aligned_cols=172 Identities=25% Similarity=0.435 Sum_probs=138.4
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCcccccceeEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCH
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLESKLLKIISAYVMQDDLLFPMLTVEETLMFAAEFRLPRSVTK 80 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~ 80 (592)
++|+||||||||||||+|+|+.+| .+|+|.++| .++|++|++.+++. ||+||+. +. + ...
T Consensus 67 ~~i~G~NGsGKSTLlk~l~Gl~~p--~~G~I~~~g----------~i~~v~Q~~~l~~~-tv~enl~-~~--~----~~~ 126 (290)
T 2bbs_A 67 LAVAGSTGAGKTSLLMMIMGELEP--SEGKIKHSG----------RISFCSQNSWIMPG-TIKENII-GV--S----YDE 126 (290)
T ss_dssp EEEEESTTSSHHHHHHHHTTSSCE--EEEEEECCS----------CEEEECSSCCCCSS-BHHHHHH-TT--C----CCH
T ss_pred EEEECCCCCcHHHHHHHHhcCCCC--CCcEEEECC----------EEEEEeCCCccCcc-cHHHHhh-Cc--c----cch
Confidence 489999999999999999999874 579999998 37999999998885 9999997 31 1 111
Q ss_pred HHHHHHHHHHHHHcCCccccc-------ccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHH
Q 048028 81 TKKQERVEALINQLGLRSAAK-------TFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVNV 153 (592)
Q Consensus 81 ~~~~~~v~~~l~~lgL~~~~~-------~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~ 153 (592)
.++++.++.+++.+..+ +.++ +.+..|||||||||+|||+|+.+|++|+|||||+|||+.++..+++.
T Consensus 127 ----~~~~~~~~~~~l~~~l~~~~~~~~~~~~-~~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~ 201 (290)
T 2bbs_A 127 ----YRYRSVIKACQLEEDISKFAEKDNIVLG-EGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFES 201 (290)
T ss_dssp ----HHHHHHHHHTTCHHHHHTSTTGGGCBC-----CCCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHH
T ss_pred ----HHHHHHHHHhChHHHHHhccccccchhc-CccCcCCHHHHHHHHHHHHHHCCCCEEEEECCcccCCHHHHHHHHHH
Confidence 12344555566644322 2232 24568999999999999999999999999999999999999999997
Q ss_pred -HHHHHHcCCEEEEEecCChhHHHhhhceEEEecCCeEeeecChhhHH
Q 048028 154 -LQRIAKSGSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNETPSNLA 200 (592)
Q Consensus 154 -l~~la~~g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~~~~~ 200 (592)
++++. +|+|||+++|+++ .+ ..||++++|++|+++..|+++++.
T Consensus 202 ll~~~~-~~~tviivtHd~~-~~-~~~d~i~~l~~G~i~~~g~~~~l~ 246 (290)
T 2bbs_A 202 CVCKLM-ANKTRILVTSKME-HL-KKADKILILHEGSSYFYGTFSELQ 246 (290)
T ss_dssp CCCCCT-TTSEEEEECCCHH-HH-HHSSEEEEEETTEEEEEECHHHHH
T ss_pred HHHHhh-CCCEEEEEecCHH-HH-HcCCEEEEEECCeEEEeCCHHHHh
Confidence 45554 4899999999986 45 569999999999999999998874
No 44
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=7.5e-35 Score=352.96 Aligned_cols=187 Identities=28% Similarity=0.467 Sum_probs=160.2
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCc---ccccceeEEEccCCCCCCCCCHHHHHHHHHHccCCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLES---KLLKIISAYVMQDDLLFPMLTVEETLMFAAEFRLPRS 77 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~---~~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~~~~ 77 (592)
+||+||||||||||+++|.|+++|. +|+|.+||.++.. ..+|+.++|||||+.+|+. |++|||.|+.. |.+
T Consensus 1108 vaIVG~SGsGKSTL~~lL~rl~~p~--~G~I~iDG~di~~i~~~~lR~~i~~V~Qdp~LF~g-TIreNI~~gld---~~~ 1181 (1321)
T 4f4c_A 1108 LALVGPSGCGKSTVVALLERFYDTL--GGEIFIDGSEIKTLNPEHTRSQIAIVSQEPTLFDC-SIAENIIYGLD---PSS 1181 (1321)
T ss_dssp EEEECSTTSSTTSHHHHHTTSSCCS--SSEEEETTEETTTBCHHHHHTTEEEECSSCCCCSE-EHHHHHSSSSC---TTT
T ss_pred EEEECCCCChHHHHHHHHhcCccCC--CCEEEECCEEhhhCCHHHHHhheEEECCCCEeeCc-cHHHHHhccCC---CCC
Confidence 5899999999999999999998864 5999999999865 4678889999999999987 99999976521 222
Q ss_pred CCHHHHHHHHHHHHHHcCC-------cccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHH
Q 048028 78 VTKTKKQERVEALINQLGL-------RSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMV 150 (592)
Q Consensus 78 ~~~~~~~~~v~~~l~~lgL-------~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i 150 (592)
.++ +++.++++..++ .+-.||.||+ ....||||||||++|||||+++|+||+||||||+||+.+...|
T Consensus 1182 ~sd----~ei~~Al~~a~l~~~I~~Lp~GldT~vge-~G~~LSgGQrQriaiARAllr~~~ILiLDEaTSaLD~~tE~~I 1256 (1321)
T 4f4c_A 1182 VTM----AQVEEAARLANIHNFIAELPEGFETRVGD-RGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVV 1256 (1321)
T ss_dssp SCH----HHHHHHHHHTTCHHHHHTSTTTTCSEETT-TSCSSCHHHHHHHHHHHHHHSCCSEEEEESCCCSTTSHHHHHH
T ss_pred CCH----HHHHHHHHHhCChHHHHcCcCCCCCEecC-CCcccCHHHHHHHHHHHHHHhCCCEEEEeCccccCCHHHHHHH
Confidence 333 446666666555 4557899985 4567999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCEEEEEecCChhHHHhhhceEEEecCCeEeeecChhhHHH
Q 048028 151 VNVLQRIAKSGSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNETPSNLAQ 201 (592)
Q Consensus 151 ~~~l~~la~~g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~~~~~~ 201 (592)
.+.|+++. +|+|+|+++|.++. ...||||++|++|+++++|+++|+.+
T Consensus 1257 q~~l~~~~-~~~TvI~IAHRLsT--i~~aD~I~Vld~G~IvE~Gth~eLl~ 1304 (1321)
T 4f4c_A 1257 QEALDRAR-EGRTCIVIAHRLNT--VMNADCIAVVSNGTIIEKGTHTQLMS 1304 (1321)
T ss_dssp HHHHTTTS-SSSEEEEECSSSST--TTTCSEEEEESSSSEEEEECHHHHHH
T ss_pred HHHHHHHc-CCCEEEEeccCHHH--HHhCCEEEEEECCEEEEECCHHHHHh
Confidence 99998875 48999999999973 57799999999999999999999864
No 45
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=4.8e-34 Score=345.92 Aligned_cols=185 Identities=31% Similarity=0.480 Sum_probs=158.8
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCc---ccccceeEEEccCCCCCCCCCHHHHHHHHHHccCCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLES---KLLKIISAYVMQDDLLFPMLTVEETLMFAAEFRLPRS 77 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~---~~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~~~~ 77 (592)
+||+||||||||||+++|.|.++| .+|+|.+||+++.. ..+|+.++||+|++.+|.. |++||+.|+.. .
T Consensus 447 vaivG~sGsGKSTll~ll~~~~~~--~~G~I~idG~~i~~~~~~~lr~~i~~v~Q~~~Lf~~-TI~eNI~~g~~-----~ 518 (1321)
T 4f4c_A 447 VALVGSSGCGKSTIISLLLRYYDV--LKGKITIDGVDVRDINLEFLRKNVAVVSQEPALFNC-TIEENISLGKE-----G 518 (1321)
T ss_dssp EEEEECSSSCHHHHHHHHTTSSCC--SEEEEEETTEETTTSCHHHHHHHEEEECSSCCCCSE-EHHHHHHTTCT-----T
T ss_pred EEEEecCCCcHHHHHHHhcccccc--ccCcccCCCccchhccHHHHhhcccccCCcceeeCC-chhHHHhhhcc-----c
Confidence 589999999999999999999885 46999999999865 4567889999999999986 99999988621 2
Q ss_pred CCHHHHHHHHHHHHHHcCC-------cccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHH
Q 048028 78 VTKTKKQERVEALINQLGL-------RSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMV 150 (592)
Q Consensus 78 ~~~~~~~~~v~~~l~~lgL-------~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i 150 (592)
.++ +++.++++..++ .+-.||.||+. ...||||||||++||||++++|+||+||||||+||+.+.+.+
T Consensus 519 ~~~----~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~-G~~LSGGQkQRiaiARAl~~~~~IliLDE~tSaLD~~te~~i 593 (1321)
T 4f4c_A 519 ITR----EEMVAACKMANAEKFIKTLPNGYNTLVGDR-GTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIV 593 (1321)
T ss_dssp CCH----HHHHHHHHHTTCHHHHHHSTTTTSSEESSS-SCCCCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCTTTHHHH
T ss_pred chH----HHHHHHHHHccchhHHHcCCCCCccEecCC-CCCCCHHHHHHHHHHHHHccCCCEEEEecccccCCHHHHHHH
Confidence 222 345555555543 45678999864 557999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCEEEEEecCChhHHHhhhceEEEecCCeEeeecChhhHHH
Q 048028 151 VNVLQRIAKSGSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNETPSNLAQ 201 (592)
Q Consensus 151 ~~~l~~la~~g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~~~~~~ 201 (592)
.+.|+++.+ |+|+|+++|+++ ..+.+|+|++|++|+++..|+.+|+.+
T Consensus 594 ~~~l~~~~~-~~T~iiiaHrls--~i~~aD~Iivl~~G~ive~Gth~eL~~ 641 (1321)
T 4f4c_A 594 QQALDKAAK-GRTTIIIAHRLS--TIRNADLIISCKNGQVVEVGDHRALMA 641 (1321)
T ss_dssp HHHHHHHHT-TSEEEEECSCTT--TTTTCSEEEEEETTEEEEEECHHHHHT
T ss_pred HHHHHHHhC-CCEEEEEcccHH--HHHhCCEEEEeeCCeeeccCCHHHHHH
Confidence 999999864 899999999997 468899999999999999999999853
No 46
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=100.00 E-value=2e-33 Score=314.93 Aligned_cols=176 Identities=26% Similarity=0.333 Sum_probs=150.8
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCcccccceeEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCH
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLESKLLKIISAYVMQDDLLFPMLTVEETLMFAAEFRLPRSVTK 80 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~ 80 (592)
++|+||||||||||||+|+|+.+|. +|+|.+ +..++|++|+..+.+.+||.|++.......
T Consensus 385 ~~i~G~NGsGKSTLlk~l~Gl~~p~--~G~I~~----------~~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~------- 445 (607)
T 3bk7_A 385 IGIVGPNGIGKTTFVKMLAGVEEPT--EGKVEW----------DLTVAYKPQYIKAEYEGTVYELLSKIDSSK------- 445 (607)
T ss_dssp EEEECCTTSSHHHHHHHHHTSSCCS--BSCCCC----------CCCEEEECSSCCCCCSSBHHHHHHHHHHHH-------
T ss_pred EEEECCCCCCHHHHHHHHhcCCCCC--ceEEEE----------eeEEEEEecCccCCCCCcHHHHHHhhhccC-------
Confidence 5899999999999999999998754 598875 235899999988888899999886531100
Q ss_pred HHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH-
Q 048028 81 TKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVNVLQRIAK- 159 (592)
Q Consensus 81 ~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~la~- 159 (592)
....++++++++.+||.+..++.++ .|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|+++++
T Consensus 446 ~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSGGe~QRv~iAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~ 520 (607)
T 3bk7_A 446 LNSNFYKTELLKPLGIIDLYDRNVE-----DLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEK 520 (607)
T ss_dssp HHCHHHHHHTHHHHTCTTTTTSBGG-----GCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHcCCchHhcCChh-----hCCHHHHHHHHHHHHHHhCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHh
Confidence 1123568899999999887776654 5999999999999999999999999999999999999999999999975
Q ss_pred cCCEEEEEecCChhHHHhhhceEEEecC--CeEeeecChhhHHH
Q 048028 160 SGSIVIMSIHQPSYRILSLLDRLIILSH--GQSVYNETPSNLAQ 201 (592)
Q Consensus 160 ~g~tvi~~~H~~~~~i~~~~D~v~ll~~--G~~v~~g~~~~~~~ 201 (592)
+|.|||+++||+. ++..+|||+++|++ |+++..|+++++..
T Consensus 521 ~g~tvi~vsHd~~-~~~~~adrv~vl~~~~g~~~~~g~p~~~~~ 563 (607)
T 3bk7_A 521 NEKTALVVEHDVL-MIDYVSDRLIVFEGEPGRHGRALPPMGMRE 563 (607)
T ss_dssp TTCEEEEECSCHH-HHHHHCSEEEEEEEETTTEEEECCCEEHHH
T ss_pred CCCEEEEEeCCHH-HHHHhCCEEEEEcCCcceEEecCCHHHHHh
Confidence 5899999999987 68889999999986 88888999988754
No 47
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=2.5e-33 Score=338.93 Aligned_cols=185 Identities=28% Similarity=0.490 Sum_probs=153.9
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCc---ccccceeEEEccCCCCCCCCCHHHHHHHHHHccCCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLES---KLLKIISAYVMQDDLLFPMLTVEETLMFAAEFRLPRS 77 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~---~~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~~~~ 77 (592)
+||+||||||||||+++|+|.++| .+|+|.+||+++.. ...|+.+|||+|++.+++. ||+||+.++.. .
T Consensus 419 ~~ivG~sGsGKSTl~~ll~g~~~~--~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~-ti~eNi~~g~~-----~ 490 (1284)
T 3g5u_A 419 VALVGNSGCGKSTTVQLMQRLYDP--LDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFAT-TIAENIRYGRE-----D 490 (1284)
T ss_dssp EEEECCSSSSHHHHHHHTTTSSCC--SEEEEEETTEEGGGSCHHHHHHHEEEECSSCCCCSS-CHHHHHHHHCS-----S
T ss_pred EEEECCCCCCHHHHHHHHhCCCCC--CCeEEEECCEEHHhCCHHHHHhheEEEcCCCccCCc-cHHHHHhcCCC-----C
Confidence 589999999999999999999885 46999999998764 3456779999999999987 99999998732 1
Q ss_pred CCHHHHHHHHHHHHHHcC-------CcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHH
Q 048028 78 VTKTKKQERVEALINQLG-------LRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMV 150 (592)
Q Consensus 78 ~~~~~~~~~v~~~l~~lg-------L~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i 150 (592)
.+.++ +++.++..+ +.+..||.+|+ .+.+||||||||++|||||+.+|+||+||||||+||+.+...+
T Consensus 491 ~~~~~----~~~~~~~~~~~~~i~~l~~g~~t~~~~-~g~~LSgGq~QriaiARal~~~p~iliLDEpts~LD~~~~~~i 565 (1284)
T 3g5u_A 491 VTMDE----IEKAVKEANAYDFIMKLPHQFDTLVGE-RGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVV 565 (1284)
T ss_dssp CCHHH----HHHHHHHTTCHHHHHHSTTGGGCCCSS-SSCSSCHHHHHHHHHHHHHHHCCSEEEEESTTCSSCHHHHHHH
T ss_pred CCHHH----HHHHHHHhCcHHHHHhccccccccccC-CCCccCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHH
Confidence 23322 333333322 33456777874 5668999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCEEEEEecCChhHHHhhhceEEEecCCeEeeecChhhHHH
Q 048028 151 VNVLQRIAKSGSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNETPSNLAQ 201 (592)
Q Consensus 151 ~~~l~~la~~g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~~~~~~ 201 (592)
.+.++++. +|+|+|+++|+++ .+ ..+|+|++|++|++++.|+++++.+
T Consensus 566 ~~~l~~~~-~~~t~i~itH~l~-~i-~~~d~i~vl~~G~i~~~g~~~~l~~ 613 (1284)
T 3g5u_A 566 QAALDKAR-EGRTTIVIAHRLS-TV-RNADVIAGFDGGVIVEQGNHDELMR 613 (1284)
T ss_dssp HHHHHHHH-TTSEEEEECSCHH-HH-TTCSEEEECSSSCCCCEECHHHHHH
T ss_pred HHHHHHHc-CCCEEEEEecCHH-HH-HcCCEEEEEECCEEEEECCHHHHHh
Confidence 99998875 5899999999987 35 5599999999999999999998753
No 48
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=100.00 E-value=2.1e-33 Score=311.38 Aligned_cols=176 Identities=25% Similarity=0.324 Sum_probs=149.9
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCcccccceeEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCH
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLESKLLKIISAYVMQDDLLFPMLTVEETLMFAAEFRLPRSVTK 80 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~ 80 (592)
+||+||||||||||+|+|+|+.+|. +|+|.+ ...++|++|+....+.+||.|++.......
T Consensus 315 ~~i~G~NGsGKSTLlk~l~Gl~~p~--~G~i~~----------~~~i~~v~Q~~~~~~~~tv~~~~~~~~~~~------- 375 (538)
T 1yqt_A 315 IGIVGPNGIGKTTFVKMLAGVEEPT--EGKIEW----------DLTVAYKPQYIKADYEGTVYELLSKIDASK------- 375 (538)
T ss_dssp EEEECCTTSSHHHHHHHHHTSSCCS--BCCCCC----------CCCEEEECSSCCCCCSSBHHHHHHHHHHHH-------
T ss_pred EEEECCCCCCHHHHHHHHhCCCCCC--CeEEEE----------CceEEEEecCCcCCCCCcHHHHHHhhhccC-------
Confidence 5899999999999999999998754 598875 234899999988778899999886531110
Q ss_pred HHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH-
Q 048028 81 TKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVNVLQRIAK- 159 (592)
Q Consensus 81 ~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~la~- 159 (592)
...+++++++++.+++.+..++.++ .|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|+++++
T Consensus 376 ~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSGGe~qrv~lAraL~~~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~ 450 (538)
T 1yqt_A 376 LNSNFYKTELLKPLGIIDLYDREVN-----ELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEK 450 (538)
T ss_dssp HTCHHHHHHTTTTTTCGGGTTSBGG-----GCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHcCChhhhcCChh-----hCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh
Confidence 0113568889999999877766654 5999999999999999999999999999999999999999999999975
Q ss_pred cCCEEEEEecCChhHHHhhhceEEEecC--CeEeeecChhhHHH
Q 048028 160 SGSIVIMSIHQPSYRILSLLDRLIILSH--GQSVYNETPSNLAQ 201 (592)
Q Consensus 160 ~g~tvi~~~H~~~~~i~~~~D~v~ll~~--G~~v~~g~~~~~~~ 201 (592)
.|.|||+++||++ ++..+|||+++|++ |+++..|+++++..
T Consensus 451 ~g~tvi~vsHd~~-~~~~~~drv~vl~~~~~~~~~~g~~~~~~~ 493 (538)
T 1yqt_A 451 NEKTALVVEHDVL-MIDYVSDRLMVFEGEPGKYGRALPPMGMRE 493 (538)
T ss_dssp HTCEEEEECSCHH-HHHHHCSEEEEEEEETTTEEEECCCEEHHH
T ss_pred CCCEEEEEeCCHH-HHHHhCCEEEEEeCCcceEeecCCHHHHHh
Confidence 5999999999987 68899999999986 78888999988754
No 49
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=6.1e-33 Score=335.53 Aligned_cols=187 Identities=27% Similarity=0.468 Sum_probs=154.1
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCc---ccccceeEEEccCCCCCCCCCHHHHHHHHHHccCCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLES---KLLKIISAYVMQDDLLFPMLTVEETLMFAAEFRLPRS 77 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~---~~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~~~~ 77 (592)
+||+||||||||||+++|+|+.+| .+|+|.+||+++.. ...|+.++||+|++.+++ .||+||+.++... ..
T Consensus 1062 v~ivG~sGsGKSTl~~~l~g~~~p--~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~-~ti~eNi~~~~~~---~~ 1135 (1284)
T 3g5u_A 1062 LALVGSSGCGKSTVVQLLERFYDP--MAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFD-CSIAENIAYGDNS---RV 1135 (1284)
T ss_dssp EEEECSSSTTHHHHHHHHTTSSCC--SEEEEESSSSCTTSSCHHHHTTSCEEEESSCCCCS-SBHHHHHTCCCSS---CC
T ss_pred EEEECCCCCCHHHHHHHHhcCcCC--CCCEEEECCEEcccCCHHHHHhceEEECCCCcccc-ccHHHHHhccCCC---CC
Confidence 589999999999999999999875 46999999998864 345778999999998886 5999999764321 12
Q ss_pred CCHHHHHHHHHHHHHHcC-------CcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHH
Q 048028 78 VTKTKKQERVEALINQLG-------LRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMV 150 (592)
Q Consensus 78 ~~~~~~~~~v~~~l~~lg-------L~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i 150 (592)
.+.++ +.+.++..+ +.+..||.+|+ .+..|||||||||+|||+|+.+|+||+|||||+|||+.+...+
T Consensus 1136 ~~~~~----i~~~~~~~~~~~~i~~l~~gldt~vge-~G~~LSgGq~Qrv~iARal~~~p~iLiLDEpTs~lD~~~~~~i 1210 (1284)
T 3g5u_A 1136 VSYEE----IVRAAKEANIHQFIDSLPDKYNTRVGD-KGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVV 1210 (1284)
T ss_dssp CCHHH----HHHHHHHHTCHHHHSSTTTGGGCBCST-TSCSSCHHHHHHHHHHHHHHHCCSSEEEESCSSSCCHHHHHHH
T ss_pred CCHHH----HHHHHHHhCcHHHHHhCccccccccCC-CCCccCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHH
Confidence 23322 333344333 34556788874 5678999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCEEEEEecCChhHHHhhhceEEEecCCeEeeecChhhHHH
Q 048028 151 VNVLQRIAKSGSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNETPSNLAQ 201 (592)
Q Consensus 151 ~~~l~~la~~g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~~~~~~ 201 (592)
.+.|+++. +|+|+|+++|+++. + ..||||++|++|++++.|+++++.+
T Consensus 1211 ~~~l~~~~-~~~tvi~isH~l~~-i-~~~dri~vl~~G~i~~~g~~~~l~~ 1258 (1284)
T 3g5u_A 1211 QEALDKAR-EGRTCIVIAHRLST-I-QNADLIVVIQNGKVKEHGTHQQLLA 1258 (1284)
T ss_dssp HHHHHHHS-SSSCEEEECSCTTG-G-GSCSEEEEEETBEEEEEECHHHHHH
T ss_pred HHHHHHhC-CCCEEEEEecCHHH-H-HcCCEEEEEECCEEEEECCHHHHHh
Confidence 99998854 58999999999984 5 5699999999999999999988753
No 50
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=100.00 E-value=1e-32 Score=305.37 Aligned_cols=176 Identities=26% Similarity=0.371 Sum_probs=147.8
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCcccccceeEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCH
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLESKLLKIISAYVMQDDLLFPMLTVEETLMFAAEFRLPRSVTK 80 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~ 80 (592)
++|+||||||||||+|+|+|+.+|. +|+|.+++. .++|++|+......+||+|++.+..... ..
T Consensus 297 ~~i~G~nGsGKSTLl~~l~Gl~~p~--~G~i~~~~~---------~i~~~~q~~~~~~~~tv~~~l~~~~~~~----~~- 360 (538)
T 3ozx_A 297 IGILGPNGIGKTTFARILVGEITAD--EGSVTPEKQ---------ILSYKPQRIFPNYDGTVQQYLENASKDA----LS- 360 (538)
T ss_dssp EEEECCTTSSHHHHHHHHTTSSCCS--BCCEESSCC---------CEEEECSSCCCCCSSBHHHHHHHHCSST----TC-
T ss_pred EEEECCCCCCHHHHHHHHhCCCCCC--CcEEEECCe---------eeEeechhcccccCCCHHHHHHHhhhhc----cc-
Confidence 5899999999999999999998864 599987653 4789999987777889999998742111 11
Q ss_pred HHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH-
Q 048028 81 TKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVNVLQRIAK- 159 (592)
Q Consensus 81 ~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~la~- 159 (592)
...+.++++++.++|.+..++.++ .|||||||||+|||+|+.+|++|||||||+|||+.++.++.+.|+++++
T Consensus 361 -~~~~~~~~~l~~~~l~~~~~~~~~-----~LSGGq~QRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~ 434 (538)
T 3ozx_A 361 -TSSWFFEEVTKRLNLHRLLESNVN-----DLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRE 434 (538)
T ss_dssp -TTSHHHHHTTTTTTGGGCTTSBGG-----GCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHH
T ss_pred -hhHHHHHHHHHHcCCHHHhcCChh-----hCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHh
Confidence 113457889999999987776654 5999999999999999999999999999999999999999999999986
Q ss_pred cCCEEEEEecCChhHHHhhhceEEEecC--CeEeeecChhhH
Q 048028 160 SGSIVIMSIHQPSYRILSLLDRLIILSH--GQSVYNETPSNL 199 (592)
Q Consensus 160 ~g~tvi~~~H~~~~~i~~~~D~v~ll~~--G~~v~~g~~~~~ 199 (592)
.|.|||+++||++ ++..+||||++|++ |.....+++.++
T Consensus 435 ~g~tvi~vsHdl~-~~~~~aDri~vl~~~~~~~~~~~~~~~~ 475 (538)
T 3ozx_A 435 RKAVTFIIDHDLS-IHDYIADRIIVFKGEPEKAGLATSPVTL 475 (538)
T ss_dssp TTCEEEEECSCHH-HHHHHCSEEEEEEEETTTEEEECCCEEH
T ss_pred CCCEEEEEeCCHH-HHHHhCCEEEEEeCCcceeccCCChHHH
Confidence 4899999999997 68899999999986 566666776554
No 51
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.98 E-value=2.2e-32 Score=306.09 Aligned_cols=176 Identities=22% Similarity=0.308 Sum_probs=147.2
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCcccccceeEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCH
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLESKLLKIISAYVMQDDLLFPMLTVEETLMFAAEFRLPRSVTK 80 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~ 80 (592)
++|+||||||||||+|+|+|+.+|. +|+. +. +..++|++|+.......||+|++... .+. ...
T Consensus 381 v~iiG~NGsGKSTLlk~l~Gl~~p~--~G~~------~~----~~~i~~~~q~~~~~~~~tv~e~~~~~--~~~--~~~- 443 (608)
T 3j16_B 381 LVMMGENGTGKTTLIKLLAGALKPD--EGQD------IP----KLNVSMKPQKIAPKFPGTVRQLFFKK--IRG--QFL- 443 (608)
T ss_dssp EEEESCTTSSHHHHHHHHHTSSCCS--BCCC------CC----SCCEEEECSSCCCCCCSBHHHHHHHH--CSS--TTT-
T ss_pred EEEECCCCCcHHHHHHHHhcCCCCC--CCcC------cc----CCcEEEecccccccCCccHHHHHHHH--hhc--ccc-
Confidence 4899999999999999999998864 4752 11 23579999997766667999987532 221 111
Q ss_pred HHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH-
Q 048028 81 TKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVNVLQRIAK- 159 (592)
Q Consensus 81 ~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~la~- 159 (592)
..+.++++++.++|.+.+++.+ ..|||||||||+||++|+.+|++|||||||+|||+.++..+++.|+++++
T Consensus 444 --~~~~~~~~l~~l~l~~~~~~~~-----~~LSGGqkQRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~ 516 (608)
T 3j16_B 444 --NPQFQTDVVKPLRIDDIIDQEV-----QHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILH 516 (608)
T ss_dssp --SHHHHHHTHHHHTSTTTSSSBS-----SSCCHHHHHHHHHHHHTTSCCSEEEECCTTTTCCHHHHHHHHHHHHHHHHH
T ss_pred --cHHHHHHHHHHcCChhhhcCCh-----hhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHh
Confidence 1245788999999998876665 46999999999999999999999999999999999999999999999974
Q ss_pred cCCEEEEEecCChhHHHhhhceEEEecC--CeEeeecChhhHHH
Q 048028 160 SGSIVIMSIHQPSYRILSLLDRLIILSH--GQSVYNETPSNLAQ 201 (592)
Q Consensus 160 ~g~tvi~~~H~~~~~i~~~~D~v~ll~~--G~~v~~g~~~~~~~ 201 (592)
+|.|||+++||++ ++..+|||+++|++ |+++..|+|+++..
T Consensus 517 ~g~tviivtHdl~-~~~~~aDrvivl~~~~g~~~~~g~p~~~~~ 559 (608)
T 3j16_B 517 NKKTAFIVEHDFI-MATYLADKVIVFEGIPSKNAHARAPESLLT 559 (608)
T ss_dssp HTCEEEEECSCHH-HHHHHCSEEEECEEETTTEEECCCCEEHHH
T ss_pred CCCEEEEEeCCHH-HHHHhCCEEEEEeCCCCeEEecCChHHHhh
Confidence 5999999999997 68899999999996 89999999988754
No 52
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.97 E-value=7.5e-32 Score=302.18 Aligned_cols=169 Identities=27% Similarity=0.362 Sum_probs=137.2
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEE---------EECCEecCcc-----cccceeEEEccCCCCCC---CCCHH
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAV---------TLNGEVLESK-----LLKIISAYVMQDDLLFP---MLTVE 63 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I---------~i~g~~~~~~-----~~~~~~~yv~Q~~~l~~---~lTV~ 63 (592)
++|+||||||||||||+|+|+++|. +|++ .++|.++... ..+..+++++|.....+ ..||+
T Consensus 120 ~~LiG~NGsGKSTLlkiL~Gll~p~--~G~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~tv~ 197 (607)
T 3bk7_A 120 VGIVGPNGTGKTTAVKILAGQLIPN--LCEDNDSWDNVIRAFRGNELQNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVR 197 (607)
T ss_dssp EEEECCTTSSHHHHHHHHTTSSCCC--TTTTCCCHHHHHHHTTTSTHHHHHHHHHHTSCCCEEECSCGGGGGGTCCSBHH
T ss_pred EEEECCCCChHHHHHHHHhCCCCCC--CCccccccchhhheeCCEehhhhhhhhhhhhcceEEeechhhhchhhccccHH
Confidence 4899999999999999999998864 4775 4566654321 11234688888743322 13999
Q ss_pred HHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCC
Q 048028 64 ETLMFAAEFRLPRSVTKTKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLD 143 (592)
Q Consensus 64 E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD 143 (592)
|++... . .+++++++++.+||++..|+.++ .|||||||||+||+||+.+|++|||||||+|||
T Consensus 198 e~l~~~-------~-----~~~~~~~~L~~lgL~~~~~~~~~-----~LSGGekQRvaIAraL~~~P~lLlLDEPTs~LD 260 (607)
T 3bk7_A 198 ELLKKV-------D-----EVGKFEEVVKELELENVLDRELH-----QLSGGELQRVAIAAALLRKAHFYFFDEPSSYLD 260 (607)
T ss_dssp HHHHHT-------C-----CSSCHHHHHHHTTCTTGGGSBGG-----GCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCC
T ss_pred HHhhhh-------H-----HHHHHHHHHHHcCCCchhCCChh-----hCCHHHHHHHHHHHHHhcCCCEEEEECCcccCC
Confidence 998531 0 12457889999999988877665 599999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHcCCEEEEEecCChhHHHhhhceEEEecCCe
Q 048028 144 STSAFMVVNVLQRIAKSGSIVIMSIHQPSYRILSLLDRLIILSHGQ 189 (592)
Q Consensus 144 ~~~~~~i~~~l~~la~~g~tvi~~~H~~~~~i~~~~D~v~ll~~G~ 189 (592)
+.++..+.+.|++++++|.|||+++|+++ .+..++||+++|+++.
T Consensus 261 ~~~~~~l~~~L~~l~~~g~tvIivsHdl~-~~~~~adri~vl~~~~ 305 (607)
T 3bk7_A 261 IRQRLKVARVIRRLANEGKAVLVVEHDLA-VLDYLSDVIHVVYGEP 305 (607)
T ss_dssp HHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEESCT
T ss_pred HHHHHHHHHHHHHHHhcCCEEEEEecChH-HHHhhCCEEEEECCCc
Confidence 99999999999999888999999999987 6888999999998653
No 53
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.97 E-value=1.1e-31 Score=297.72 Aligned_cols=169 Identities=25% Similarity=0.351 Sum_probs=137.1
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEE---------EECCEecCcc-----cccceeEEEccCCCCCCC---CCHH
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAV---------TLNGEVLESK-----LLKIISAYVMQDDLLFPM---LTVE 63 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I---------~i~g~~~~~~-----~~~~~~~yv~Q~~~l~~~---lTV~ 63 (592)
++|+||||||||||||+|+|+++|. +|++ .++|.++... ..+..+++++|+..+.+. .||.
T Consensus 50 ~~LvG~NGaGKSTLlk~l~Gl~~p~--~G~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~v~ 127 (538)
T 1yqt_A 50 VGIVGPNGTGKSTAVKILAGQLIPN--LCGDNDSWDGVIRAFRGNELQNYFEKLKNGEIRPVVKPQYVDLIPKAVKGKVI 127 (538)
T ss_dssp EEEECCTTSSHHHHHHHHHTSSCCC--TTTTCCSHHHHHHHTTTSTHHHHHHHHHTTSCCCEEECSCGGGSGGGCCSBHH
T ss_pred EEEECCCCCCHHHHHHHHhCCCCCC--CCccCcchhhhHHhhCCccHHHHHHHHHHHhhhhhhhhhhhhhcchhhhccHH
Confidence 4899999999999999999998764 4775 3566554310 112346899987544332 3899
Q ss_pred HHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCC
Q 048028 64 ETLMFAAEFRLPRSVTKTKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLD 143 (592)
Q Consensus 64 E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD 143 (592)
|++... +.+++++++++.+||++..++.++ .|||||||||+||++|+.+|++|||||||++||
T Consensus 128 e~~~~~------------~~~~~~~~~l~~lgl~~~~~~~~~-----~LSgGekQRv~iAraL~~~P~lLlLDEPTs~LD 190 (538)
T 1yqt_A 128 ELLKKA------------DETGKLEEVVKALELENVLEREIQ-----HLSGGELQRVAIAAALLRNATFYFFDEPSSYLD 190 (538)
T ss_dssp HHHHHH------------CSSSCHHHHHHHTTCTTTTTSBGG-----GCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCC
T ss_pred HHHhhh------------hHHHHHHHHHHHcCCChhhhCChh-----hCCHHHHHHHHHHHHHhcCCCEEEEECCcccCC
Confidence 987531 112457889999999887776654 599999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHcCCEEEEEecCChhHHHhhhceEEEecCCe
Q 048028 144 STSAFMVVNVLQRIAKSGSIVIMSIHQPSYRILSLLDRLIILSHGQ 189 (592)
Q Consensus 144 ~~~~~~i~~~l~~la~~g~tvi~~~H~~~~~i~~~~D~v~ll~~G~ 189 (592)
+.++..+.+.|++++++|.|||+++|++. ++..+|||+++|++|.
T Consensus 191 ~~~~~~l~~~L~~l~~~g~tvi~vsHd~~-~~~~~~dri~vl~~~~ 235 (538)
T 1yqt_A 191 IRQRLNAARAIRRLSEEGKSVLVVEHDLA-VLDYLSDIIHVVYGEP 235 (538)
T ss_dssp HHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEEEET
T ss_pred HHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEcCcc
Confidence 99999999999999888999999999987 6889999999998653
No 54
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.97 E-value=4.3e-31 Score=301.13 Aligned_cols=191 Identities=22% Similarity=0.320 Sum_probs=124.1
Q ss_pred CEEECCCCCcHHHHH---------------------HHHhCCCCCCC-----ceeEEEECCEecCcccccceeEEEccCC
Q 048028 1 MAILGASGAGKTTLM---------------------DALAGRIEKES-----LQGAVTLNGEVLESKLLKIISAYVMQDD 54 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL---------------------~~l~g~~~~~~-----~~G~I~i~g~~~~~~~~~~~~~yv~Q~~ 54 (592)
++|+||||||||||+ ++++|+..++. ..|.|.++|.+.... .++.+++|+|..
T Consensus 47 ~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~~~~~-~~~~ig~v~q~~ 125 (670)
T 3ux8_A 47 VVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKTTSRN-PRSTVGTVTEIY 125 (670)
T ss_dssp EEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC------CCBHHHHTTCC
T ss_pred EEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCchhhcc-chhceeeeechh
Confidence 589999999999998 78888766541 146777777655322 233345555543
Q ss_pred C-------------------CCCCCCHHHHHHHHHHccCCCCCCHHHHH------HHHHHHHHHcCCccc-ccccccCCC
Q 048028 55 L-------------------LFPMLTVEETLMFAAEFRLPRSVTKTKKQ------ERVEALINQLGLRSA-AKTFIGDER 108 (592)
Q Consensus 55 ~-------------------l~~~lTV~E~l~f~~~l~~~~~~~~~~~~------~~v~~~l~~lgL~~~-~~~~vg~~~ 108 (592)
. .++.+||+||+.+...+..... .....+ ....++++.+||.+. .|+.++
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~--- 201 (670)
T 3ux8_A 126 DYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEK-EAQIARLILREIRDRLGFLQNVGLDYLTLSRSAG--- 201 (670)
T ss_dssp -------------------------CC---------------------------CHHHHHHHHHTTCTTCCTTCBGG---
T ss_pred hhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchh-hhHHHHHHHHHHHHHHHHHHHcCCchhhhcCCcc---
Confidence 2 3467899999987533221110 000001 111246888999764 455554
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCc--EEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCChhHHHhhhceEEEe-
Q 048028 109 HRGVSGGERRRVSIGIHIIHDPI--LLFLDEPTSGLDSTSAFMVVNVLQRIAKSGSIVIMSIHQPSYRILSLLDRLIIL- 185 (592)
Q Consensus 109 ~~~LSgGerqRv~ia~~L~~~p~--lllLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~H~~~~~i~~~~D~v~ll- 185 (592)
.|||||||||+|||||+.+|+ +|||||||+|||+.++..+++.|++++++|.|||+++||++ . ...||++++|
T Consensus 202 --~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~-~-~~~~d~ii~l~ 277 (670)
T 3ux8_A 202 --TLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDED-T-MLAADYLIDIG 277 (670)
T ss_dssp --GSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEEEEECCCHH-H-HHHCSEEEEEC
T ss_pred --cCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-H-HhhCCEEEEec
Confidence 599999999999999999998 99999999999999999999999999888999999999986 3 4569999999
Q ss_pred -----cCCeEeeecChhhHH
Q 048028 186 -----SHGQSVYNETPSNLA 200 (592)
Q Consensus 186 -----~~G~~v~~g~~~~~~ 200 (592)
++|++++.|+++++.
T Consensus 278 ~g~~~~~G~i~~~g~~~~~~ 297 (670)
T 3ux8_A 278 PGAGIHGGEVVAAGTPEEVM 297 (670)
T ss_dssp SSSGGGCCSEEEEECHHHHH
T ss_pred ccccccCCEEEEecCHHHHh
Confidence 899999999998764
No 55
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.97 E-value=3.6e-31 Score=292.91 Aligned_cols=169 Identities=22% Similarity=0.306 Sum_probs=133.6
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEE-----------EECCEecCcc---------cccceeEEEccCCCCCCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAV-----------TLNGEVLESK---------LLKIISAYVMQDDLLFPML 60 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I-----------~i~g~~~~~~---------~~~~~~~yv~Q~~~l~~~l 60 (592)
+||+||||||||||||+|+|+++|. +|+| .++|+++... .......|+.|.+.++. .
T Consensus 28 ~gLiGpNGaGKSTLlkiL~Gl~~p~--~G~i~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 104 (538)
T 3ozx_A 28 LGVLGKNGVGKTTVLKILAGEIIPN--FGDPNSKVGKDEVLKRFRGKEIYNYFKELYSNELKIVHKIQYVEYASKFLK-G 104 (538)
T ss_dssp EEEECCTTSSHHHHHHHHTTSSCCC--TTCTTSCCCHHHHHHHHTTSTTHHHHHHHHTTCCCEEEECSCTTGGGTTCC-S
T ss_pred EEEECCCCCcHHHHHHHHhcCCCCC--CCccccccchhhHHhhcCCeeHHHHHHHHhhcccchhhccchhhhhhhhcc-C
Confidence 4899999999999999999998865 4888 5677665321 01111233333333333 3
Q ss_pred CHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCC
Q 048028 61 TVEETLMFAAEFRLPRSVTKTKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTS 140 (592)
Q Consensus 61 TV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPts 140 (592)
||+|++... +.+++++++++.+|+.+..|+.++ .|||||||||+||+||+.+|++|+|||||+
T Consensus 105 ~v~~~l~~~------------~~~~~~~~~l~~l~l~~~~~~~~~-----~LSgGe~Qrv~iA~aL~~~p~illlDEPts 167 (538)
T 3ozx_A 105 TVNEILTKI------------DERGKKDEVKELLNMTNLWNKDAN-----ILSGGGLQRLLVAASLLREADVYIFDQPSS 167 (538)
T ss_dssp BHHHHHHHH------------CCSSCHHHHHHHTTCGGGTTSBGG-----GCCHHHHHHHHHHHHHHSCCSEEEEESTTT
T ss_pred cHHHHhhcc------------hhHHHHHHHHHHcCCchhhcCChh-----hCCHHHHHHHHHHHHHHcCCCEEEEECCcc
Confidence 888866421 112457889999999988877665 599999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHcCCEEEEEecCChhHHHhhhceEEEecCCeEe
Q 048028 141 GLDSTSAFMVVNVLQRIAKSGSIVIMSIHQPSYRILSLLDRLIILSHGQSV 191 (592)
Q Consensus 141 gLD~~~~~~i~~~l~~la~~g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v 191 (592)
+||+.++..+.+.|+++++ |+|||+++|+++ ++..+||+|++|++|...
T Consensus 168 ~LD~~~~~~l~~~l~~l~~-g~tii~vsHdl~-~~~~~~d~i~vl~~~~~~ 216 (538)
T 3ozx_A 168 YLDVRERMNMAKAIRELLK-NKYVIVVDHDLI-VLDYLTDLIHIIYGESSV 216 (538)
T ss_dssp TCCHHHHHHHHHHHHHHCT-TSEEEEECSCHH-HHHHHCSEEEEEEEETTT
T ss_pred cCCHHHHHHHHHHHHHHhC-CCEEEEEEeChH-HHHhhCCEEEEecCCccc
Confidence 9999999999999999976 999999999997 689999999999876543
No 56
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.96 E-value=1.1e-29 Score=294.17 Aligned_cols=169 Identities=23% Similarity=0.317 Sum_probs=140.1
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCcccccceeEEEccCC-CCCCCCCHHHHHHHHHHccCCCCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLESKLLKIISAYVMQDD-LLFPMLTVEETLMFAAEFRLPRSVT 79 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~~~~~~~~~yv~Q~~-~l~~~lTV~E~l~f~~~l~~~~~~~ 79 (592)
++|+||||||||||||+|+| |+| +|.+... . ..++|++|+. .+++.+||.|++.+ ... ..
T Consensus 464 v~LiGpNGsGKSTLLk~Lag--------G~i--~g~~~~~-~--~~~~~v~q~~~~~~~~ltv~e~l~~--~~~---~~- 524 (986)
T 2iw3_A 464 YGICGPNGCGKSTLMRAIAN--------GQV--DGFPTQE-E--CRTVYVEHDIDGTHSDTSVLDFVFE--SGV---GT- 524 (986)
T ss_dssp EEEECSTTSSHHHHHHHHHH--------TCS--TTCCCTT-T--SCEEETTCCCCCCCTTSBHHHHHHT--TCS---SC-
T ss_pred EEEECCCCCCHHHHHHHHhC--------CCc--CCCcccc-c--eeEEEEcccccccccCCcHHHHHHH--hhc---CH-
Confidence 48999999999999999994 222 3433221 1 2368999984 78889999999975 111 11
Q ss_pred HHHHHHHHHHHHHHcCCc-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 048028 80 KTKKQERVEALINQLGLR-SAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVNVLQRIA 158 (592)
Q Consensus 80 ~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~la 158 (592)
+++++++++.+||. +..++.++ .|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|++
T Consensus 525 ----~~~v~~~L~~lgL~~~~~~~~~~-----~LSGGqkQRvaLArAL~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~-- 593 (986)
T 2iw3_A 525 ----KEAIKDKLIEFGFTDEMIAMPIS-----ALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT-- 593 (986)
T ss_dssp ----HHHHHHHHHHTTCCHHHHHSBGG-----GCCHHHHHHHHHHHHHHTTCSEEEEESTTTTCCHHHHHHHHHHHHH--
T ss_pred ----HHHHHHHHHHcCCChhhhcCCcc-----cCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHh--
Confidence 46789999999995 56666665 5999999999999999999999999999999999999999999998
Q ss_pred HcCCEEEEEecCChhHHHhhhceEEEecCCeEe-eecChhhHHH
Q 048028 159 KSGSIVIMSIHQPSYRILSLLDRLIILSHGQSV-YNETPSNLAQ 201 (592)
Q Consensus 159 ~~g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v-~~g~~~~~~~ 201 (592)
+|.|||+++|++. .+.++||++++|++|+++ +.|+++++.+
T Consensus 594 -~g~tvIivSHdl~-~l~~~adrii~L~~G~iv~~~G~~~e~~~ 635 (986)
T 2iw3_A 594 -CGITSITISHDSV-FLDNVCEYIINYEGLKLRKYKGNFTEFVK 635 (986)
T ss_dssp -SCSEEEEECSCHH-HHHHHCSEEEEEETTEEEEEESCHHHHHH
T ss_pred -CCCEEEEEECCHH-HHHHhCCEEEEEECCeeecCCCCHHHHHh
Confidence 5899999999987 688999999999999996 7899987654
No 57
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.96 E-value=1.4e-29 Score=288.67 Aligned_cols=126 Identities=31% Similarity=0.432 Sum_probs=106.3
Q ss_pred CCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcc-cccccccCCCCCCCCHHHHHHHHHHHHHhhCC---cEEE
Q 048028 59 MLTVEETLMFAAEFRLPRSVTKTKKQERVEALINQLGLRS-AAKTFIGDERHRGVSGGERRRVSIGIHIIHDP---ILLF 134 (592)
Q Consensus 59 ~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p---~lll 134 (592)
.+||+||+.+.... ...+++.+.++.+||.+ ..+. .+..|||||||||+|||||+.+| ++||
T Consensus 504 ~ltv~e~l~~~~~~---------~~~~~~~~~l~~~~l~~~~~~~-----~~~~LSgG~~qrv~iAraL~~~p~~p~lll 569 (670)
T 3ux8_A 504 DMTVEDALDFFASI---------PKIKRKLETLYDVGLGYMKLGQ-----PATTLSGGEAQRVKLAAELHRRSNGRTLYI 569 (670)
T ss_dssp TSBHHHHHHHTTTC---------HHHHHHHHHHHHTTCTTSBTTC-----CGGGCCHHHHHHHHHHHHHHSCCCSCEEEE
T ss_pred hCCHHHHHHHHHHh---------hhHHHHHHHHHHcCCchhhccC-----CchhCCHHHHHHHHHHHHHhhCCCCCcEEE
Confidence 57999999874321 12345677888999964 2343 44569999999999999999887 5999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCChhHHHhhhceEEEe------cCCeEeeecChhhHH
Q 048028 135 LDEPTSGLDSTSAFMVVNVLQRIAKSGSIVIMSIHQPSYRILSLLDRLIIL------SHGQSVYNETPSNLA 200 (592)
Q Consensus 135 LDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~H~~~~~i~~~~D~v~ll------~~G~~v~~g~~~~~~ 200 (592)
|||||+|||+.++..+++.|++++++|.|||+++|+++ . ...||||++| ++|++++.|+++++.
T Consensus 570 lDEPt~~LD~~~~~~i~~~l~~l~~~g~tvi~vtHd~~-~-~~~~d~i~~l~~~~g~~~G~i~~~g~~~~~~ 639 (670)
T 3ux8_A 570 LDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLD-V-IKTADYIIDLGPEGGDRGGQIVAVGTPEEVA 639 (670)
T ss_dssp EESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHH-H-HTTCSEEEEEESSSGGGCCEEEEEECHHHHH
T ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-H-HHhCCEEEEecCCcCCCCCEEEEecCHHHHH
Confidence 99999999999999999999999988999999999986 3 4679999999 899999999999873
No 58
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.96 E-value=9.1e-30 Score=284.86 Aligned_cols=174 Identities=28% Similarity=0.353 Sum_probs=132.0
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEE-----------EECCEecCcc---cccce--eEEEccCCCC------CC
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAV-----------TLNGEVLESK---LLKII--SAYVMQDDLL------FP 58 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I-----------~i~g~~~~~~---~~~~~--~~yv~Q~~~l------~~ 58 (592)
++|+||||||||||||+|+|+++|. +|+| .+.|.++... ...+. ..+.+|.... -+
T Consensus 106 ~~LvGpNGaGKSTLLkiL~Gll~P~--~G~i~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (608)
T 3j16_B 106 LGLVGTNGIGKSTALKILAGKQKPN--LGRFDDPPEWQEIIKYFRGSELQNYFTKMLEDDIKAIIKPQYVDNIPRAIKGP 183 (608)
T ss_dssp EEEECCTTSSHHHHHHHHHTSSCCC--TTTTCCSSCHHHHHHHTTTSTHHHHHHHHHHTSCCCEEECCCTTTHHHHCSSS
T ss_pred EEEECCCCChHHHHHHHHhcCCCCC--CceEecccchhhhhheecChhhhhhhhHHHHHhhhhhhchhhhhhhhhhhcch
Confidence 4899999999999999999998865 4877 2333322110 00111 1233333211 12
Q ss_pred CCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCC
Q 048028 59 MLTVEETLMFAAEFRLPRSVTKTKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEP 138 (592)
Q Consensus 59 ~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEP 138 (592)
..++.+++.... ++..++++++++.+||.+..|+.++ .|||||||||+||++|+.+|++|+||||
T Consensus 184 ~~~v~~~l~~~~----------~~~~~~~~~~l~~~gl~~~~~~~~~-----~LSgGe~Qrv~iAraL~~~p~llllDEP 248 (608)
T 3j16_B 184 VQKVGELLKLRM----------EKSPEDVKRYIKILQLENVLKRDIE-----KLSGGELQRFAIGMSCVQEADVYMFDEP 248 (608)
T ss_dssp SSHHHHHHHHHC----------CSCHHHHHHHHHHHTCTGGGGSCTT-----TCCHHHHHHHHHHHHHHSCCSEEEEECT
T ss_pred hhHHHHHHhhhh----------hhHHHHHHHHHHHcCCcchhCCChH-----HCCHHHHHHHHHHHHHHhCCCEEEEECc
Confidence 235666554310 1123578899999999988876665 5999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCChhHHHhhhceEEEecCCeEee
Q 048028 139 TSGLDSTSAFMVVNVLQRIAKSGSIVIMSIHQPSYRILSLLDRLIILSHGQSVY 192 (592)
Q Consensus 139 tsgLD~~~~~~i~~~l~~la~~g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~ 192 (592)
|+|||+.++..+.+.|++++++|+|||+++|+++ ++..++||+++|++|..+|
T Consensus 249 ts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHdl~-~~~~~~drv~vl~~~~~~~ 301 (608)
T 3j16_B 249 SSYLDVKQRLNAAQIIRSLLAPTKYVICVEHDLS-VLDYLSDFVCIIYGVPSVY 301 (608)
T ss_dssp TTTCCHHHHHHHHHHHHGGGTTTCEEEEECSCHH-HHHHHCSEEEEEESCTTTE
T ss_pred ccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEeCCcccc
Confidence 9999999999999999999888999999999997 6889999999999876554
No 59
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.95 E-value=3.3e-29 Score=290.24 Aligned_cols=176 Identities=24% Similarity=0.372 Sum_probs=133.9
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCcccccceeEEEccCCCC----CCCCCHHHHHHHHHHcc---
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLESKLLKIISAYVMQDDLL----FPMLTVEETLMFAAEFR--- 73 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~~~~~~~~~yv~Q~~~l----~~~lTV~E~l~f~~~l~--- 73 (592)
++|+||||||||||||+|+|+++| .+|+|.++|. ..++|++|+... ....|++|++.+.....
T Consensus 702 vaIiGpNGSGKSTLLklLaGll~P--~sG~I~~~~~--------~~I~yv~Q~~~~~l~~~~~~t~~e~i~~~~q~g~d~ 771 (986)
T 2iw3_A 702 IAVIGPNGAGKSTLINVLTGELLP--TSGEVYTHEN--------CRIAYIKQHAFAHIESHLDKTPSEYIQWRFQTGEDR 771 (986)
T ss_dssp EEECSCCCHHHHHHHHHHTTSSCC--SEEEEEECTT--------CCEEEECHHHHHHGGGCTTSCHHHHHHHHTTTSSCT
T ss_pred EEEECCCCCCHHHHHHHHhCCCCC--CceEEEEcCc--------cceEeeccchhhhhhcccccCHHHHHHHHhhccchh
Confidence 589999999999999999999875 4699999862 136888887521 22457777765431100
Q ss_pred ---------CC----------------------------------------------------CCC--------C-----
Q 048028 74 ---------LP----------------------------------------------------RSV--------T----- 79 (592)
Q Consensus 74 ---------~~----------------------------------------------------~~~--------~----- 79 (592)
.. ..+ +
T Consensus 772 ~~~~~~~~~l~~ed~~~~~~~~~~~g~~r~~~~i~~r~~~~~~~~~e~~~sv~ENi~l~~~~~~~lt~~en~~~~~~~l~ 851 (986)
T 2iw3_A 772 ETMDRANRQINENDAEAMNKIFKIEGTPRRIAGIHSRRKFKNTYEYECSFLLGENIGMKSERWVPMMSVDNAWIPRGELV 851 (986)
T ss_dssp TTTTTTSCCCCSSCSSGGGCCEEETTEEEEEEEEEEEEEETTEEEEEEEEEEEESTTSTTCEEEECCGGGCEEEEGGGTH
T ss_pred hhhhhhhhccchhhhhhhhcccccccchhhhhhhhhhhhhcccchhhhhhhhhhhhhcccccccccchhhhhhhhhHHHh
Confidence 00 000 0
Q ss_pred ---------------------HHHHHHHHHHHHHHcCCccc--ccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEe
Q 048028 80 ---------------------KTKKQERVEALINQLGLRSA--AKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLD 136 (592)
Q Consensus 80 ---------------------~~~~~~~v~~~l~~lgL~~~--~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLD 136 (592)
....+++++++++.+||.+. .+..+ ++|||||||||+||++|+.+|++||||
T Consensus 852 ~~~~~~v~~~d~~~~~~~g~~~~~~~~~i~~~Le~lGL~~~~~~~~~~-----~~LSGGQkQRVaLArAL~~~P~LLLLD 926 (986)
T 2iw3_A 852 ESHSKMVAEVDMKEALASGQFRPLTRKEIEEHCSMLGLDPEIVSHSRI-----RGLSGGQKVKLVLAAGTWQRPHLIVLD 926 (986)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHHHHTTCCHHHHHHSCG-----GGCCHHHHHHHHHHHHHTTCCSEEEEE
T ss_pred hhHhhhhhhhhhhhhhhhcccchhHHHHHHHHHHHcCCCchhhcCCCc-----cccCHHHHHHHHHHHHHHhCCCEEEEE
Confidence 00113568899999999752 45544 469999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCChhHHHhhhceEEEecCCeEeeecC
Q 048028 137 EPTSGLDSTSAFMVVNVLQRIAKSGSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNET 195 (592)
Q Consensus 137 EPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~ 195 (592)
|||+|||+.+...+.+.|+++ +.|||++||+++ .+.++||++++|++|+++..|+
T Consensus 927 EPT~gLD~~s~~~L~~~L~~~---g~tVIiISHD~e-~v~~l~DrVivL~~G~Iv~~G~ 981 (986)
T 2iw3_A 927 EPTNYLDRDSLGALSKALKEF---EGGVIIITHSAE-FTKNLTEEVWAVKDGRMTPSGH 981 (986)
T ss_dssp CGGGTCCHHHHHHHHHHHHSC---SSEEEEECSCHH-HHTTTCCEEECCBTTBCCC---
T ss_pred CCccCCCHHHHHHHHHHHHHh---CCEEEEEECCHH-HHHHhCCEEEEEECCEEEEeCC
Confidence 999999999999999888765 679999999987 5778999999999999987764
No 60
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.95 E-value=8.9e-27 Score=269.75 Aligned_cols=127 Identities=30% Similarity=0.439 Sum_probs=106.9
Q ss_pred CCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCC---cEEEE
Q 048028 59 MLTVEETLMFAAEFRLPRSVTKTKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDP---ILLFL 135 (592)
Q Consensus 59 ~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p---~lllL 135 (592)
.+||.|++.|... ....+++.++|+.+||.... + ++.+..|||||||||+||++|+.+| +||||
T Consensus 766 ~~tv~eal~f~~~---------~~~~~~~~~~L~~vGL~~~~---l-gq~~~~LSGGErQRV~LAraL~~~p~~p~LLIL 832 (916)
T 3pih_A 766 DMTVDEALEFFKN---------IPSIKRTLQVLHDVGLGYVK---L-GQPATTLSGGEAQRIKLASELRKRDTGRTLYIL 832 (916)
T ss_dssp SSBHHHHHHHTTT---------CHHHHHHHHHHHHTTGGGSB---T-TCCSTTCCHHHHHHHHHHHHHTSCCCSSEEEEE
T ss_pred hCCHHHHHHHHhc---------chhHHHHHHHHHHcCCchhh---c-cCCccCCCHHHHHHHHHHHHHhhCCCCCCEEEE
Confidence 3688888877431 12345678899999997532 1 2445679999999999999999875 79999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCChhHHHhhhceEEEe------cCCeEeeecChhhHH
Q 048028 136 DEPTSGLDSTSAFMVVNVLQRIAKSGSIVIMSIHQPSYRILSLLDRLIIL------SHGQSVYNETPSNLA 200 (592)
Q Consensus 136 DEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~H~~~~~i~~~~D~v~ll------~~G~~v~~g~~~~~~ 200 (592)
||||+|||+.+...+++.|++++++|.|||+++|+++ .+ ..||+|++| ++|++++.|+++++.
T Consensus 833 DEPTsGLD~~~~~~L~~lL~~L~~~G~TVIvI~HdL~-~i-~~ADrIivLgp~gg~~~G~Iv~~Gtpeel~ 901 (916)
T 3pih_A 833 DEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIEHNLD-VI-KNADHIIDLGPEGGKEGGYIVATGTPEEIA 901 (916)
T ss_dssp ESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHH-HH-TTCSEEEEEESSSGGGCCEEEEEESHHHHH
T ss_pred ECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HH-HhCCEEEEecCCCCCCCCEEEEEcCHHHHH
Confidence 9999999999999999999999988999999999986 34 669999999 899999999999874
No 61
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.94 E-value=2.7e-27 Score=272.36 Aligned_cols=126 Identities=32% Similarity=0.433 Sum_probs=105.7
Q ss_pred CCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcc-cccccccCCCCCCCCHHHHHHHHHHHHHhhCC---cEEE
Q 048028 59 MLTVEETLMFAAEFRLPRSVTKTKKQERVEALINQLGLRS-AAKTFIGDERHRGVSGGERRRVSIGIHIIHDP---ILLF 134 (592)
Q Consensus 59 ~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p---~lll 134 (592)
.+||.|++.|... . . ..+++.++++.+||.. ..++.+ ..|||||||||+||++|+.+| ++||
T Consensus 806 ~ltv~e~l~~~~~------~-~--~~~~~~~~L~~~gL~~~~l~~~~-----~~LSGGekQRv~LAraL~~~p~~p~lLI 871 (972)
T 2r6f_A 806 DMTVEDALDFFAS------I-P--KIKRKLETLYDVGLGYMKLGQPA-----TTLSGGEAQRVKLAAELHRRSNGRTLYI 871 (972)
T ss_dssp TSBHHHHHHHTCS------C-H--HHHHHHHHHHHTTCSSSBTTCCG-----GGCCHHHHHHHHHHHHHSSCCCSCEEEE
T ss_pred hcCHHHHHHHHhc------c-h--hHHHHHHHHHHcCCCcccccCch-----hhCCHHHHHHHHHHHHHhcCCCCCCEEE
Confidence 4678888776321 1 1 1234678999999986 555544 469999999999999999865 9999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCChhHHHhhhceEEEe------cCCeEeeecChhhHH
Q 048028 135 LDEPTSGLDSTSAFMVVNVLQRIAKSGSIVIMSIHQPSYRILSLLDRLIIL------SHGQSVYNETPSNLA 200 (592)
Q Consensus 135 LDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~H~~~~~i~~~~D~v~ll------~~G~~v~~g~~~~~~ 200 (592)
|||||+|||+.+...+++.|++++++|.|||+++|+++ .+ ..||++++| ++|++++.|+++++.
T Consensus 872 LDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~-~i-~~aDrIivL~p~gG~~~G~Iv~~g~~~el~ 941 (972)
T 2r6f_A 872 LDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLD-VI-KTADYIIDLGPEGGDRGGQIVAVGTPEEVA 941 (972)
T ss_dssp EECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHH-HH-TTCSEEEEECSSSTTSCCSEEEEESHHHHH
T ss_pred EECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHH-HH-HhCCEEEEEcCCCCCCCCEEEEecCHHHHH
Confidence 99999999999999999999999988999999999986 34 689999999 689999999998874
No 62
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.94 E-value=5.1e-27 Score=269.65 Aligned_cols=109 Identities=23% Similarity=0.351 Sum_probs=97.9
Q ss_pred HHHHHHHHHHcCCccc-ccccccCCCCCCCCHHHHHHHHHHHHHhhC---CcEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Q 048028 84 QERVEALINQLGLRSA-AKTFIGDERHRGVSGGERRRVSIGIHIIHD---PILLFLDEPTSGLDSTSAFMVVNVLQRIAK 159 (592)
Q Consensus 84 ~~~v~~~l~~lgL~~~-~~~~vg~~~~~~LSgGerqRv~ia~~L~~~---p~lllLDEPtsgLD~~~~~~i~~~l~~la~ 159 (592)
.+++.++++.+||... .++. +..|||||||||.||++|+.+ |+||||||||+|||+.+...+.+.|+++++
T Consensus 707 ~~~~~~~L~~~gL~~~~l~~~-----~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~ 781 (842)
T 2vf7_A 707 IFRALDTLREVGLGYLRLGQP-----ATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVD 781 (842)
T ss_dssp HHHHHHHHHHTTCTTSBTTCC-----GGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCcccccCC-----cccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh
Confidence 3578899999999863 3444 456999999999999999996 799999999999999999999999999998
Q ss_pred cCCEEEEEecCChhHHHhhhceEEEe------cCCeEeeecChhhH
Q 048028 160 SGSIVIMSIHQPSYRILSLLDRLIIL------SHGQSVYNETPSNL 199 (592)
Q Consensus 160 ~g~tvi~~~H~~~~~i~~~~D~v~ll------~~G~~v~~g~~~~~ 199 (592)
+|.|||+++|+++ ++ +.||+|++| ++|++++.|+++++
T Consensus 782 ~G~tVIvisHdl~-~i-~~aDrii~L~p~~g~~~G~Iv~~g~~~el 825 (842)
T 2vf7_A 782 AGNTVIAVEHKMQ-VV-AASDWVLDIGPGAGEDGGRLVAQGTPAEV 825 (842)
T ss_dssp TTCEEEEECCCHH-HH-TTCSEEEEECSSSGGGCCSEEEEECHHHH
T ss_pred CCCEEEEEcCCHH-HH-HhCCEEEEECCCCCCCCCEEEEEcCHHHH
Confidence 8999999999986 46 889999999 78999999999876
No 63
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.94 E-value=9.7e-27 Score=268.62 Aligned_cols=125 Identities=27% Similarity=0.386 Sum_probs=104.8
Q ss_pred CCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcc-cccccccCCCCCCCCHHHHHHHHHHHHHhhCC---cEEEE
Q 048028 60 LTVEETLMFAAEFRLPRSVTKTKKQERVEALINQLGLRS-AAKTFIGDERHRGVSGGERRRVSIGIHIIHDP---ILLFL 135 (592)
Q Consensus 60 lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p---~lllL 135 (592)
+||.|++.|... . . ..+++.++++.+||.. ..++. +..|||||||||+||++|+.+| ++|||
T Consensus 825 ltv~e~l~~~~~------~-~--~~~~~~~~L~~lgL~~~~l~~~-----~~~LSGGekQRv~LAraL~~~p~~p~lLIL 890 (993)
T 2ygr_A 825 MSIEEAAEFFEP------I-A--GVHRYLRTLVDVGLGYVRLGQP-----APTLSGGEAQRVKLASELQKRSTGRTVYIL 890 (993)
T ss_dssp SBHHHHHHHSTT------C-H--HHHHHHHHHHHTTGGGSBTTCC-----GGGSCHHHHHHHHHHHHHSSCCCSSEEEEE
T ss_pred ccHHHHHHHhhc------c-h--HHHHHHHHHHHcCCCcccccCc-----cccCCHHHHHHHHHHHHHHhCCCCCCEEEE
Confidence 577777766321 1 1 2234578999999976 45444 4569999999999999999865 99999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCChhHHHhhhceEEEe------cCCeEeeecChhhHH
Q 048028 136 DEPTSGLDSTSAFMVVNVLQRIAKSGSIVIMSIHQPSYRILSLLDRLIIL------SHGQSVYNETPSNLA 200 (592)
Q Consensus 136 DEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~H~~~~~i~~~~D~v~ll------~~G~~v~~g~~~~~~ 200 (592)
||||+|||+.+...+.+.|++++++|.|||+++|+++ .+ +.||++++| ++|++++.|+++++.
T Consensus 891 DEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~-~i-~~aDrIivL~p~gg~~~G~Iv~~G~~~el~ 959 (993)
T 2ygr_A 891 DEPTTGLHFDDIRKLLNVINGLVDKGNTVIVIEHNLD-VI-KTSDWIIDLGPEGGAGGGTVVAQGTPEDVA 959 (993)
T ss_dssp ESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHH-HH-TTCSEEEEEESSSTTSCSEEEEEECHHHHH
T ss_pred ECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHH-HH-HhCCEEEEECCCcCCCCCEEEEecCHHHHH
Confidence 9999999999999999999999988999999999986 34 789999999 689999999998874
No 64
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.94 E-value=6.5e-29 Score=269.74 Aligned_cols=173 Identities=12% Similarity=0.129 Sum_probs=136.4
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCcee-E-EEECCEecCcccccceeEEEccCCC---CCCCCCHHHHHHHHHHccCC
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQG-A-VTLNGEVLESKLLKIISAYVMQDDL---LFPMLTVEETLMFAAEFRLP 75 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G-~-I~i~g~~~~~~~~~~~~~yv~Q~~~---l~~~lTV~E~l~f~~~l~~~ 75 (592)
++|+||||||||||+|+|+|+.++ .+| + |.+||. .++.++|++|+.. +.+.+||+||+ |+......
T Consensus 141 v~IvGpnGsGKSTLlr~L~Gl~~p--~~G~~pI~vdg~------~~~~i~~vpq~~~l~~~~~~~tv~eni-~~~~~~~~ 211 (460)
T 2npi_A 141 VVIVGGSQTGKTSLSRTLCSYALK--FNAYQPLYINLD------PQQPIFTVPGCISATPISDILDAQLPT-WGQSLTSG 211 (460)
T ss_dssp EEEEESTTSSHHHHHHHHHHTTHH--HHCCCCEEEECC------TTSCSSSCSSCCEEEECCSCCCTTCTT-CSCBCBSS
T ss_pred EEEECCCCCCHHHHHHHHhCcccc--cCCceeEEEcCC------ccCCeeeeccchhhcccccccchhhhh-cccccccC
Confidence 589999999999999999999874 569 8 999982 3566899999984 45567999998 65432111
Q ss_pred CCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHH--HhhCCcE----EEEeC-CCCCCCHHHHH
Q 048028 76 RSVTKTKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIH--IIHDPIL----LFLDE-PTSGLDSTSAF 148 (592)
Q Consensus 76 ~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~--L~~~p~l----llLDE-PtsgLD~~~~~ 148 (592)
. ..++++.++++.+|+++..+ ..+|||||||||+||++ |+.+|++ ||||| ||+|||+. ..
T Consensus 212 --~---~~~~~~~~ll~~~gl~~~~~-------~~~LSgGq~qrlalAra~rL~~~p~i~~sGLlLDEpPts~LD~~-~~ 278 (460)
T 2npi_A 212 --A---TLLHNKQPMVKNFGLERINE-------NKDLYLECISQLGQVVGQRLHLDPQVRRSGCIVDTPSISQLDEN-LA 278 (460)
T ss_dssp --C---CSSCCBCCEECCCCSSSGGG-------CHHHHHHHHHHHHHHHHHHHHHCHHHHHSCEEEECCCGGGSCSS-CH
T ss_pred --c---chHHHHHHHHHHhCCCcccc-------hhhhhHHHHHHHHHHHHHHhccCcccCcceEEEeCCcccccChh-HH
Confidence 0 11234567788889887654 34699999999999999 9999999 99999 99999999 44
Q ss_pred HHHHHHHHHHHcCCEEEEEecCCh--h---HHHhhhce-----EEEec-CCeEeeecChhhH
Q 048028 149 MVVNVLQRIAKSGSIVIMSIHQPS--Y---RILSLLDR-----LIILS-HGQSVYNETPSNL 199 (592)
Q Consensus 149 ~i~~~l~~la~~g~tvi~~~H~~~--~---~i~~~~D~-----v~ll~-~G~~v~~g~~~~~ 199 (592)
.+.+.+++ .+.|+|+++|+.+ . ++..++|| |++|+ +|+++ .|+++++
T Consensus 279 ~l~~l~~~---~~~tviiVth~~~~~l~~~~~~~~~dr~~~~~vi~l~k~G~iv-~g~~~~~ 336 (460)
T 2npi_A 279 ELHHIIEK---LNVNIMLVLCSETDPLWEKVKKTFGPELGNNNIFFIPKLDGVS-AVDDVYK 336 (460)
T ss_dssp HHHHHHHH---TTCCEEEEECCSSCTHHHHHHHHHHHHHCGGGEEEECCCTTCC-CCCHHHH
T ss_pred HHHHHHHH---hCCCEEEEEccCchhhhHHHHHHhcccccCCEEEEEeCCCcEE-ECCHHHH
Confidence 44444443 3789999999976 1 46689999 99999 99999 8988765
No 65
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.93 E-value=3.6e-26 Score=245.73 Aligned_cols=79 Identities=24% Similarity=0.375 Sum_probs=74.2
Q ss_pred CCHHHHHHHHHHHHHhhCC--cEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCChhHHHhhhceEEEe----
Q 048028 112 VSGGERRRVSIGIHIIHDP--ILLFLDEPTSGLDSTSAFMVVNVLQRIAKSGSIVIMSIHQPSYRILSLLDRLIIL---- 185 (592)
Q Consensus 112 LSgGerqRv~ia~~L~~~p--~lllLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~H~~~~~i~~~~D~v~ll---- 185 (592)
|||||||||+||++|+.+| ++|||||||+|||+.++..+.+.|++++ +|.+||++||+|. +.+.||++++|
T Consensus 296 lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~-~~~~vi~itH~~~--~~~~~d~i~~l~k~~ 372 (415)
T 4aby_A 296 ASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLA-DTRQVLVVTHLAQ--IAARAHHHYKVEKQV 372 (415)
T ss_dssp SCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHT-TTSEEEEECSCHH--HHTTCSEEEEEEEEE
T ss_pred cCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHh-CCCEEEEEeCcHH--HHhhcCeEEEEEEec
Confidence 6999999999999999999 9999999999999999999999999998 6899999999984 56889999999
Q ss_pred cCCeEeee
Q 048028 186 SHGQSVYN 193 (592)
Q Consensus 186 ~~G~~v~~ 193 (592)
++|+++..
T Consensus 373 ~~G~~~~~ 380 (415)
T 4aby_A 373 EDGRTVSH 380 (415)
T ss_dssp ETTEEEEE
T ss_pred cCCceEEE
Confidence 89998754
No 66
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.90 E-value=6.3e-24 Score=224.78 Aligned_cols=84 Identities=26% Similarity=0.433 Sum_probs=77.3
Q ss_pred CCCCCCCHHHHHHHHHHHHHh------hCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCChhHHHhhhc
Q 048028 107 ERHRGVSGGERRRVSIGIHII------HDPILLFLDEPTSGLDSTSAFMVVNVLQRIAKSGSIVIMSIHQPSYRILSLLD 180 (592)
Q Consensus 107 ~~~~~LSgGerqRv~ia~~L~------~~p~lllLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~H~~~~~i~~~~D 180 (592)
..+..|||||||||+||++|+ .+|++|||||||+|||+.++..+++.|++++++|.|||+++|+++ ..+.+|
T Consensus 275 ~~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~~--~~~~~d 352 (365)
T 3qf7_A 275 RPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDRE--FSEAFD 352 (365)
T ss_dssp EEGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCHH--HHTTCS
T ss_pred CCchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecchH--HHHhCC
Confidence 345679999999999999999 799999999999999999999999999999888999999999986 368899
Q ss_pred eEEEecCCeEee
Q 048028 181 RLIILSHGQSVY 192 (592)
Q Consensus 181 ~v~ll~~G~~v~ 192 (592)
++++|++|+++.
T Consensus 353 ~~~~l~~G~i~~ 364 (365)
T 3qf7_A 353 RKLRITGGVVVN 364 (365)
T ss_dssp CEEEEETTEEC-
T ss_pred EEEEEECCEEEe
Confidence 999999999874
No 67
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.89 E-value=1.4e-24 Score=206.77 Aligned_cols=144 Identities=15% Similarity=0.120 Sum_probs=100.7
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCcc---cccceeEEEccCCCCCCCCCHHHHHHHHHHccCCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLESK---LLKIISAYVMQDDLLFPMLTVEETLMFAAEFRLPRS 77 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~~---~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~~~~ 77 (592)
++|+||||||||||+|+|+|.+. |.++|.+.... ..++.+||++|+. ++.+++ + +.+.
T Consensus 3 i~l~G~nGsGKTTLl~~l~g~l~-------i~~~g~~~~~~~~~~~~~~ig~~~~~~------~~~~~~-~-~~~~---- 63 (178)
T 1ye8_A 3 IIITGEPGVGKTTLVKKIVERLG-------KRAIGFWTEEVRDPETKKRTGFRIITT------EGKKKI-F-SSKF---- 63 (178)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHG-------GGEEEEEEEEEC------CCEEEEEET------TCCEEE-E-EETT----
T ss_pred EEEECCCCCCHHHHHHHHHHHhC-------CcCCCEEhhhhccccccceeEEEeecC------cHHHHH-H-Hhhc----
Confidence 48999999999999999999874 33444433211 3356689999975 233333 1 1110
Q ss_pred CCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHH-----HhhCCcEEEEeC--CCCCCCHHHHHHH
Q 048028 78 VTKTKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIH-----IIHDPILLFLDE--PTSGLDSTSAFMV 150 (592)
Q Consensus 78 ~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~-----L~~~p~lllLDE--PtsgLD~~~~~~i 150 (592)
... ++..+ .++..||||||||++||++ ++.+|++++||| ||++||+.....+
T Consensus 64 ~~~----------------~~~~~-----~~~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l 122 (178)
T 1ye8_A 64 FTS----------------KKLVG-----SYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLV 122 (178)
T ss_dssp CCC----------------SSEET-----TEEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHH
T ss_pred CCc----------------ccccc-----ccccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHH
Confidence 000 01222 3345699999999999996 999999999999 9999999999999
Q ss_pred HHHHHHHHHcCCEEEEEec---CChhHHHhhhceEEEecCCeEee
Q 048028 151 VNVLQRIAKSGSIVIMSIH---QPSYRILSLLDRLIILSHGQSVY 192 (592)
Q Consensus 151 ~~~l~~la~~g~tvi~~~H---~~~~~i~~~~D~v~ll~~G~~v~ 192 (592)
.+.+++ .+.|+|+++| +.. .+..++|| .+|+++.
T Consensus 123 ~~~l~~---~~~~~i~~~H~~h~~~-~~~~i~~r----~~~~i~~ 159 (178)
T 1ye8_A 123 RQIMHD---PNVNVVATIPIRDVHP-LVKEIRRL----PGAVLIE 159 (178)
T ss_dssp HHHHTC---TTSEEEEECCSSCCSH-HHHHHHTC----TTCEEEE
T ss_pred HHHHhc---CCCeEEEEEccCCCch-HHHHHHhc----CCcEEEE
Confidence 888876 4677888886 544 57778887 4566654
No 68
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.89 E-value=1.1e-26 Score=226.81 Aligned_cols=128 Identities=20% Similarity=0.180 Sum_probs=89.9
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecC--cccccceeEEEccCCCCCCCCCHHHHH-HHHH----Hcc
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLE--SKLLKIISAYVMQDDLLFPMLTVEETL-MFAA----EFR 73 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~--~~~~~~~~~yv~Q~~~l~~~lTV~E~l-~f~~----~l~ 73 (592)
++|+||||||||||||+|+|+ +| .+|+|. +.++. ....++.+||++|++ +||+ .+.. .+.
T Consensus 25 ~~liG~nGsGKSTLl~~l~Gl-~p--~~G~I~--~~~~~~~~~~~~~~ig~v~q~~--------~enl~~~~~~~~~~~~ 91 (208)
T 3b85_A 25 VFGLGPAGSGKTYLAMAKAVQ-AL--QSKQVS--RIILTRPAVEAGEKLGFLPGTL--------NEKIDPYLRPLHDALR 91 (208)
T ss_dssp EEEECCTTSSTTHHHHHHHHH-HH--HTTSCS--EEEEEECSCCTTCCCCSSCC--------------CTTTHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHhcC-CC--cCCeee--eEEecCCchhhhcceEEecCCH--------HHHHHHHHHHHHHHHH
Confidence 489999999999999999999 74 458873 22221 123456789999976 4444 2211 111
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHH
Q 048028 74 LPRSVTKTKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVNV 153 (592)
Q Consensus 74 ~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~ 153 (592)
. .. ..++++++++. | + ||||||+|||+|+.+|++|||||||+| ++..+.+.
T Consensus 92 ~--~~----~~~~~~~~l~~-g----------------l--Gq~qrv~lAraL~~~p~lllLDEPts~----~~~~l~~~ 142 (208)
T 3b85_A 92 D--MV----EPEVIPKLMEA-G----------------I--VEVAPLAYMRGRTLNDAFVILDEAQNT----TPAQMKMF 142 (208)
T ss_dssp T--TS----CTTHHHHHHHT-T----------------S--EEEEEGGGGTTCCBCSEEEEECSGGGC----CHHHHHHH
T ss_pred H--hc----cHHHHHHHHHh-C----------------C--chHHHHHHHHHHhcCCCEEEEeCCccc----cHHHHHHH
Confidence 0 00 12345556554 3 2 999999999999999999999999999 88999999
Q ss_pred HHHHHHcCCEEEEEecCCh
Q 048028 154 LQRIAKSGSIVIMSIHQPS 172 (592)
Q Consensus 154 l~~la~~g~tvi~~~H~~~ 172 (592)
|+++ ++|+||| +||+++
T Consensus 143 l~~l-~~g~tii-vtHd~~ 159 (208)
T 3b85_A 143 LTRL-GFGSKMV-VTGDIT 159 (208)
T ss_dssp HTTB-CTTCEEE-EEEC--
T ss_pred HHHh-cCCCEEE-EECCHH
Confidence 9998 6689999 999986
No 69
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.89 E-value=1.6e-23 Score=218.07 Aligned_cols=89 Identities=20% Similarity=0.281 Sum_probs=74.1
Q ss_pred CCCCCCHHHHHHHHHHHHHh----hCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCChhHHHhhhceE-
Q 048028 108 RHRGVSGGERRRVSIGIHII----HDPILLFLDEPTSGLDSTSAFMVVNVLQRIAKSGSIVIMSIHQPSYRILSLLDRL- 182 (592)
Q Consensus 108 ~~~~LSgGerqRv~ia~~L~----~~p~lllLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~H~~~~~i~~~~D~v- 182 (592)
.+..||||||||++||++|+ .+|++|+|||||++||+..+..+.+.|++++ +|.++|+++|+++ +.+.+|++
T Consensus 216 ~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~-~~~~vi~~tH~~~--~~~~~d~~~ 292 (322)
T 1e69_A 216 KLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENS-KHTQFIVITHNKI--VMEAADLLH 292 (322)
T ss_dssp BGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHT-TTSEEEEECCCTT--GGGGCSEEE
T ss_pred chhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEECCHH--HHhhCceEE
Confidence 34679999999999999997 5889999999999999999999999999985 4889999999974 67899987
Q ss_pred -EEecCCe-EeeecChhhH
Q 048028 183 -IILSHGQ-SVYNETPSNL 199 (592)
Q Consensus 183 -~ll~~G~-~v~~g~~~~~ 199 (592)
++|.+|+ .+.....++.
T Consensus 293 ~v~~~~g~s~~~~~~~~~~ 311 (322)
T 1e69_A 293 GVTMVNGVSAIVPVEVEKI 311 (322)
T ss_dssp EEEESSSCEEEEECCC---
T ss_pred EEEEeCCEEEEEEEEcchh
Confidence 7888875 4545555543
No 70
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.86 E-value=1.3e-24 Score=220.51 Aligned_cols=147 Identities=19% Similarity=0.206 Sum_probs=98.4
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCcccccceeEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCH
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLESKLLKIISAYVMQDDLLFPMLTVEETLMFAAEFRLPRSVTK 80 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~ 80 (592)
++|+||||||||||+|+|+|...+. +|+|.++|+++.....++.++|++|++.+++.+||.||+.|+.....
T Consensus 5 v~lvG~nGaGKSTLln~L~g~~~~~--~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~------ 76 (270)
T 3sop_A 5 IMVVGQSGLGKSTLVNTLFKSQVSR--KASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINN------ 76 (270)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHC--------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBC------
T ss_pred EEEECCCCCCHHHHHHHHhCCCCCC--CCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhccc------
Confidence 5899999999999999999998754 59999999988655556779999999999999999999988754321
Q ss_pred HHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc
Q 048028 81 TKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVNVLQRIAKS 160 (592)
Q Consensus 81 ~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~la~~ 160 (592)
.+..+.+.+.++ .+..+.+.+ .||||||||+++||+++. +++||||++|||+.. .+.++++.+.
T Consensus 77 ~~~~~~i~~~~~----~~~~~~~~~-----~LS~G~~qrv~iaRal~~---lllldep~~gL~~lD----~~~l~~L~~~ 140 (270)
T 3sop_A 77 ENCWEPIEKYIN----EQYEKFLKE-----EVNIARKKRIPDTRVHCC---LYFISPTGHSLRPLD----LEFMKHLSKV 140 (270)
T ss_dssp TTCSHHHHHHHH----HHHHHHHHH-----HSCTTCCSSCCCCSCCEE---EEEECCCSSSCCHHH----HHHHHHHHTT
T ss_pred HHHHHHHHHHHH----HHHHhhhHH-----hcCcccchhhhhheeeee---eEEEecCCCcCCHHH----HHHHHHHHhc
Confidence 111122333333 233444433 599999999999999775 999999999999987 5566667665
Q ss_pred CCEEEEEecCCh
Q 048028 161 GSIVIMSIHQPS 172 (592)
Q Consensus 161 g~tvi~~~H~~~ 172 (592)
.++|+++|..+
T Consensus 141 -~~vI~Vi~K~D 151 (270)
T 3sop_A 141 -VNIIPVIAKAD 151 (270)
T ss_dssp -SEEEEEETTGG
T ss_pred -CcEEEEEeccc
Confidence 88999998754
No 71
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.86 E-value=2.5e-24 Score=230.06 Aligned_cols=160 Identities=16% Similarity=0.192 Sum_probs=124.5
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCcccccceeEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCH
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLESKLLKIISAYVMQDDLLFPMLTVEETLMFAAEFRLPRSVTK 80 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~ 80 (592)
+||+||||||||||+|+|+|+.++. +|+|.++|.+.+. .+|++|++ .++.+|+.|++.+.. +
T Consensus 72 valvG~nGaGKSTLln~L~Gl~~p~--~GsI~~~g~~~t~------~~~v~q~~-~~~~ltv~D~~g~~~----~----- 133 (413)
T 1tq4_A 72 VAVTGETGSGKSSFINTLRGIGNEE--EGAAKTGVVEVTM------ERHPYKHP-NIPNVVFWDLPGIGS----T----- 133 (413)
T ss_dssp EEEEECTTSSHHHHHHHHHTCCTTS--TTSCCCCC----C------CCEEEECS-SCTTEEEEECCCGGG----S-----
T ss_pred EEEECCCCCcHHHHHHHHhCCCCcc--CceEEECCeecce------eEEecccc-ccCCeeehHhhcccc----h-----
Confidence 4899999999999999999998754 5999999976531 27899985 578899999875431 0
Q ss_pred HHHHHHHHHHHHHcCCcccccccccCCCCCCCCHH--HHHHHHHHHHHhh----------CCcEEEEeCCCCCCCHHHHH
Q 048028 81 TKKQERVEALINQLGLRSAAKTFIGDERHRGVSGG--ERRRVSIGIHIIH----------DPILLFLDEPTSGLDSTSAF 148 (592)
Q Consensus 81 ~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgG--erqRv~ia~~L~~----------~p~lllLDEPtsgLD~~~~~ 148 (592)
+.+++++++.+++.+... .+ . +||| ||||+.||++|+. +|++++|||||+|||+.++.
T Consensus 134 ---~~~~~~~L~~~~L~~~~~-~~-----~-lS~G~~~kqrv~la~aL~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~ 203 (413)
T 1tq4_A 134 ---NFPPDTYLEKMKFYEYDF-FI-----I-ISATRFKKNDIDIAKAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKE 203 (413)
T ss_dssp ---SCCHHHHHHHTTGGGCSE-EE-----E-EESSCCCHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHH
T ss_pred ---HHHHHHHHHHcCCCccCC-eE-----E-eCCCCccHHHHHHHHHHHhcCCCeEEEEecCcccccCcccccCCHHHHH
Confidence 135788999999876532 21 2 9999 9999999999999 99999999999999999999
Q ss_pred HHHHHHHHHH-----HcC----CEEEEEecCChh-HHHhhhceEE-EecCC
Q 048028 149 MVVNVLQRIA-----KSG----SIVIMSIHQPSY-RILSLLDRLI-ILSHG 188 (592)
Q Consensus 149 ~i~~~l~~la-----~~g----~tvi~~~H~~~~-~i~~~~D~v~-ll~~G 188 (592)
++.+.++++. +.| .++++++|+.+. .+.+++|++. .|.+|
T Consensus 204 ~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~~~Lpeg 254 (413)
T 1tq4_A 204 KVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPIY 254 (413)
T ss_dssp HHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHHHHSCGG
T ss_pred HHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHHHHhCccc
Confidence 9999999985 223 568889998762 2677777774 44444
No 72
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.84 E-value=2e-22 Score=190.39 Aligned_cols=62 Identities=6% Similarity=0.149 Sum_probs=58.2
Q ss_pred CCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHH----------------HHHHHHHHHHHHHHcCCEEEEEecCCh
Q 048028 111 GVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDST----------------SAFMVVNVLQRIAKSGSIVIMSIHQPS 172 (592)
Q Consensus 111 ~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~----------------~~~~i~~~l~~la~~g~tvi~~~H~~~ 172 (592)
..|||||||++||++++.+|++|+|||||++||+. ...++.+.|++++++|.|+|+++|+++
T Consensus 83 ~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~~~~~~~~vi~~~~~~l~~~l~~l~~~g~tvi~vtH~~~ 160 (171)
T 4gp7_A 83 VQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHTQQMKKSIKGLQREGFRYVYILNSPE 160 (171)
T ss_dssp CSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHSTTHHHHTCSEEEEECSHH
T ss_pred CCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHHHHHhhhhhhhHHhcCCcEEEEeCCHH
Confidence 36999999999999999999999999999999999 568999999999888999999999986
No 73
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.83 E-value=7.5e-25 Score=213.41 Aligned_cols=167 Identities=17% Similarity=0.103 Sum_probs=117.7
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCcccccceeEEEccCCCCCCCCCHHHHHHHHHHccC---CCC
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLESKLLKIISAYVMQDDLLFPMLTVEETLMFAAEFRL---PRS 77 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~---~~~ 77 (592)
++|+||||||||||+|+|+|+.+ ...+.+.+.+.+.. ...++.++|++|++.+++.+|+.|++........ ...
T Consensus 23 ~~l~GpnGsGKSTLl~~l~gl~~--~i~~~~~~~~~~~~-~~~~~~i~~~~q~~~~~~~~~~~~~l~~~~~~~~n~~~~g 99 (207)
T 1znw_A 23 VVLSGPSAVGKSTVVRCLRERIP--NLHFSVSATTRAPR-PGEVDGVDYHFIDPTRFQQLIDQGELLEWAEIHGGLHRSG 99 (207)
T ss_dssp EEEECSTTSSHHHHHHHHHHHST--TCEECCCEESSCCC-TTCCBTTTBEECCHHHHHHHHHTTCEEEEEEEGGGTEEEE
T ss_pred EEEECCCCCCHHHHHHHHHhhCC--ceEEcccccccCCc-ccccCCCeeEecCHHHHHHHHhcCCceeehhhcCchhhcC
Confidence 48999999999999999999975 22232222222211 1224557999999888888888877632111100 011
Q ss_pred CCHHHHHHHHHHH------HHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCC----CHHHH
Q 048028 78 VTKTKKQERVEAL------INQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGL----DSTSA 147 (592)
Q Consensus 78 ~~~~~~~~~v~~~------l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgL----D~~~~ 147 (592)
.++++.++++++. ++.+|+.+.++... +.|| +|+.+|++++|||||+|+ |+..+
T Consensus 100 ~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~lS-----------~l~~~p~~~~LDep~~~l~~~~d~~~~ 163 (207)
T 1znw_A 100 TLAQPVRAAAATGVPVLIEVDLAGARAIKKTMP-----EAVT-----------VFLAPPSWQDLQARLIGRGTETADVIQ 163 (207)
T ss_dssp EEHHHHHHHHHHTCCEEEECCHHHHHHHHHHCT-----TSEE-----------EEEECSCHHHHHHHHHTTSCSCHHHHH
T ss_pred CcHHHHHHHHHcCCeEEEEeCHHHHHHHHHhcC-----CcEE-----------EEEECCCHHHHHHHHHhcCCCCHHHHH
Confidence 2344555666665 55666655554443 3477 889999999999999998 78899
Q ss_pred HHHHHHHHHHHH-cCCEEEEEecCChhHHHhhhceEEEecC
Q 048028 148 FMVVNVLQRIAK-SGSIVIMSIHQPSYRILSLLDRLIILSH 187 (592)
Q Consensus 148 ~~i~~~l~~la~-~g~tvi~~~H~~~~~i~~~~D~v~ll~~ 187 (592)
.++.+.++++.+ .|.|+|+++|+++ ++.++|||+++|.+
T Consensus 164 ~~l~~~l~~l~~~~g~tvi~vtHdl~-~~~~~~d~i~~l~~ 203 (207)
T 1znw_A 164 RRLDTARIELAAQGDFDKVVVNRRLE-SACAELVSLLVGTA 203 (207)
T ss_dssp HHHHHHHHHHHGGGGSSEEEECSSHH-HHHHHHHHHHC---
T ss_pred HHHHHHHHHHhhhccCcEEEECCCHH-HHHHHHHHHHHhcc
Confidence 999999999975 5899999999997 79999999999853
No 74
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.83 E-value=5.7e-21 Score=221.30 Aligned_cols=162 Identities=24% Similarity=0.378 Sum_probs=124.4
Q ss_pred HHHHHhCCCCCCCceeEEEECCEecCcccccceeEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCH-----HHHHHHHH
Q 048028 14 LMDALAGRIEKESLQGAVTLNGEVLESKLLKIISAYVMQDDLLFPMLTVEETLMFAAEFRLPRSVTK-----TKKQERVE 88 (592)
Q Consensus 14 LL~~l~g~~~~~~~~G~I~i~g~~~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~-----~~~~~~v~ 88 (592)
...|..+++++. .|+|.++|+++.. +..+||.|++.|...+.++..... .+..++..
T Consensus 384 C~~C~g~rl~~~--~~~V~i~G~~i~~----------------~~~~~v~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~ 445 (916)
T 3pih_A 384 CSVCGGRRLNRE--ALSVKINGLNIHE----------------FTELSISEELEFLKNLNLTEREREIVGELLKEIEKRL 445 (916)
T ss_dssp CTTTCSCCBCTT--GGGEEETTEEHHH----------------HHHSBHHHHHHHHHSCCCCTTTTTTHHHHHHHHHHHH
T ss_pred chhcccccCChH--hcCcEECCccHHH----------------hhhCCHHHHHHHHHhccCcHHHHHHHHhhHHHHHHHH
Confidence 345556666643 4999999987643 234678888877554432211100 01123345
Q ss_pred HHHHHcCCccc-ccccccCCCCCCCCHHHHHHHHHHHHHhhCCc--EEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEE
Q 048028 89 ALINQLGLRSA-AKTFIGDERHRGVSGGERRRVSIGIHIIHDPI--LLFLDEPTSGLDSTSAFMVVNVLQRIAKSGSIVI 165 (592)
Q Consensus 89 ~~l~~lgL~~~-~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~--lllLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi 165 (592)
+.+..+||.+. .++.+ ..|||||||||.||++|+.+|+ +|+|||||+|||+.....+++.|++++++|.|||
T Consensus 446 ~~L~~vgL~~l~l~r~~-----~~LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~~L~~L~~~G~Tvi 520 (916)
T 3pih_A 446 EFLVDVGLEYLTLSRSA-----TTLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGNTVI 520 (916)
T ss_dssp HHHHTTTCTTCBTTSBG-----GGCCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHHHHHHTTTTTCEEE
T ss_pred HHHHHcCCccccccCCc-----ccCCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHhcCCEEE
Confidence 67888999754 45444 4699999999999999999887 9999999999999999999999999988899999
Q ss_pred EEecCChhHHHhhhceEEEe------cCCeEeeecChhhHH
Q 048028 166 MSIHQPSYRILSLLDRLIIL------SHGQSVYNETPSNLA 200 (592)
Q Consensus 166 ~~~H~~~~~i~~~~D~v~ll------~~G~~v~~g~~~~~~ 200 (592)
+++|+++ ....+|+|++| ++|++++.|+++++.
T Consensus 521 vVtHd~~--~~~~aD~ii~lgpgag~~~G~iv~~G~~~e~~ 559 (916)
T 3pih_A 521 VVEHDEE--VIRNADHIIDIGPGGGTNGGRVVFQGTVDELL 559 (916)
T ss_dssp EECCCHH--HHHTCSEEEEEESSSGGGCSEEEEEECHHHHH
T ss_pred EEeCCHH--HHHhCCEEEEEcCCcccCCCEEEEeechhhhh
Confidence 9999985 34569999999 899999999998874
No 75
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.81 E-value=1.2e-21 Score=201.82 Aligned_cols=162 Identities=17% Similarity=0.200 Sum_probs=122.5
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCcc-------cc--cceeEEEccCCC-CCCCCCHHHHHHHHH
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLESK-------LL--KIISAYVMQDDL-LFPMLTVEETLMFAA 70 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~~-------~~--~~~~~yv~Q~~~-l~~~lTV~E~l~f~~ 70 (592)
++|+||||||||||++.|+|++++. +|+|.++|.++.+. .+ +..++|++|++. ++|.+||+|++.++.
T Consensus 103 i~lvG~nGsGKTTll~~Lag~l~~~--~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~~~~~v~e~l~~~~ 180 (302)
T 3b9q_A 103 IMIVGVNGGGKTTSLGKLAHRLKNE--GTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAATVLSKAVKRGK 180 (302)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHHHT--TCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCCHHHHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHc--CCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccCHHHHHHHHHHHHH
Confidence 4799999999999999999998754 59999999887532 12 235899999998 899999999998764
Q ss_pred HccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCc--EEEEeCCCCCCCHHHHH
Q 048028 71 EFRLPRSVTKTKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPI--LLFLDEPTSGLDSTSAF 148 (592)
Q Consensus 71 ~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~--lllLDEPtsgLD~~~~~ 148 (592)
... .. ..+++.+|+.+..+.+++ +|| |||++||++|+.+|+ +|+|| ||+|||+...
T Consensus 181 ~~~----~d--------~~lldt~gl~~~~~~~~~-----eLS---kqr~~iaral~~~P~e~lLvLD-ptsglD~~~~- 238 (302)
T 3b9q_A 181 EEG----YD--------VVLCDTSGRLHTNYSLME-----ELI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQ- 238 (302)
T ss_dssp HTT----CS--------EEEECCCCCSSCCHHHHH-----HHH---HHHHHHHTTSTTCCSEEEEEEE-GGGGGGGHHH-
T ss_pred HcC----Cc--------chHHhcCCCCcchhHHHH-----HHH---HHHHHHHHhhccCCCeeEEEEe-CCCCcCHHHH-
Confidence 211 00 135667788776666654 499 999999999999999 99999 9999999754
Q ss_pred HHHHHHHHHHH-cCCEEEEEecCCh--------hHHHhhhceEEEecCCeEe
Q 048028 149 MVVNVLQRIAK-SGSIVIMSIHQPS--------YRILSLLDRLIILSHGQSV 191 (592)
Q Consensus 149 ~i~~~l~~la~-~g~tvi~~~H~~~--------~~i~~~~D~v~ll~~G~~v 191 (592)
++++.+ .|.|+|++||... +.+....+.|..+..|+.+
T Consensus 239 -----~~~~~~~~g~t~iiiThlD~~~~~g~~l~~~~~~~~pi~~i~~Ge~~ 285 (302)
T 3b9q_A 239 -----AREFNEVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEAV 285 (302)
T ss_dssp -----HHHHHHHTCCCEEEEECCSSCSCTHHHHHHHHHHCCCEEEEECSSSG
T ss_pred -----HHHHHHhcCCCEEEEeCCCCCCccChheehHHHHCCCEEEEeCCCCh
Confidence 345554 4899999999432 1233456688888888653
No 76
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=99.80 E-value=1.4e-19 Score=189.57 Aligned_cols=77 Identities=30% Similarity=0.415 Sum_probs=70.0
Q ss_pred CCCCCCHHHHH------HHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCChhHHHhhhce
Q 048028 108 RHRGVSGGERR------RVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVNVLQRIAKSGSIVIMSIHQPSYRILSLLDR 181 (592)
Q Consensus 108 ~~~~LSgGerq------Rv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~H~~~~~i~~~~D~ 181 (592)
.+..||||||| |+++|++|+.+|++|+|||||+|||+..+..+.+.|+++.++|.+||+++|++. +.+.||+
T Consensus 245 ~~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~~--~~~~~d~ 322 (339)
T 3qkt_A 245 PLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEE--LKDAADH 322 (339)
T ss_dssp CGGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCGG--GGGGCSE
T ss_pred ChHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChHH--HHHhCCE
Confidence 45679999999 667788888899999999999999999999999999999888899999999964 6789999
Q ss_pred EEEec
Q 048028 182 LIILS 186 (592)
Q Consensus 182 v~ll~ 186 (592)
++.|.
T Consensus 323 ~~~l~ 327 (339)
T 3qkt_A 323 VIRIS 327 (339)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 99996
No 77
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=99.80 E-value=1.1e-22 Score=208.82 Aligned_cols=142 Identities=18% Similarity=0.270 Sum_probs=107.8
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCcccccceeEEEccCCCCCCCCCHHH-HHHHHHHccCCCCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLESKLLKIISAYVMQDDLLFPMLTVEE-TLMFAAEFRLPRSVT 79 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~~~~~~~~~yv~Q~~~l~~~lTV~E-~l~f~~~l~~~~~~~ 79 (592)
++|+||||||||||+++|+|++ +|+| ++|++|++.+++. |++| |+.+.. ..+
T Consensus 129 vaIvGpsGsGKSTLl~lL~gl~-----~G~I---------------~~~v~q~~~lf~~-ti~~~ni~~~~------~~~ 181 (305)
T 2v9p_A 129 LAFIGPPNTGKSMLCNSLIHFL-----GGSV---------------LSFANHKSHFWLA-SLADTRAALVD------DAT 181 (305)
T ss_dssp EEEECSSSSSHHHHHHHHHHHH-----TCEE---------------ECGGGTTSGGGGG-GGTTCSCEEEE------EEC
T ss_pred EEEECCCCCcHHHHHHHHhhhc-----CceE---------------EEEecCccccccc-cHHHHhhccCc------ccc
Confidence 5899999999999999999996 4888 3567888877774 7776 775521 111
Q ss_pred HHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Q 048028 80 KTKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVNVLQRIAK 159 (592)
Q Consensus 80 ~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~la~ 159 (592)
. .+.+.++.+ |.+..| +..|||||||| ||+|+.+|+||| ||+||+.+...+..
T Consensus 182 ~-----~~~~~i~~~-L~~gld-------g~~LSgGqkQR---ARAll~~p~iLl----Ts~LD~~~~~~i~~------- 234 (305)
T 2v9p_A 182 H-----ACWRYFDTY-LRNALD-------GYPVSIDRKHK---AAVQIKAPPLLV----TSNIDVQAEDRYLY------- 234 (305)
T ss_dssp H-----HHHHHHHHT-TTGGGG-------TCCEECCCSSC---CCCEECCCCEEE----EESSCSTTCGGGGG-------
T ss_pred H-----HHHHHHHHH-hHccCC-------ccCcCHHHHHH---HHHHhCCCCEEE----ECCCCHHHHHHHHH-------
Confidence 1 345566654 444333 34799999999 999999999999 99999999888752
Q ss_pred cCCEEEEEecCChhHHHhhhceEEEecCCeEeeecChhhHHHHHHHc
Q 048028 160 SGSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNETPSNLAQFFAEF 206 (592)
Q Consensus 160 ~g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~~~~~~~f~~~ 206 (592)
.+|+++ ..+.+|+| +|++|++++.|+++++..+|.++
T Consensus 235 -------ltH~~~--~~~~aD~i-vl~~G~iv~~g~~~el~~~y~~l 271 (305)
T 2v9p_A 235 -------LHSRVQ--TFRFEQPC-TDESGEQPFNITDADWKSFFVRL 271 (305)
T ss_dssp -------GTTTEE--EEECCCCC-CCC---CCCCCCHHHHHHHHHHS
T ss_pred -------HhCCHH--HHHhCCEE-EEeCCEEEEeCCHHHHHHHHHHH
Confidence 188876 46789999 99999999999999986666654
No 78
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.79 E-value=3.9e-19 Score=204.77 Aligned_cols=135 Identities=24% Similarity=0.430 Sum_probs=110.6
Q ss_pred CCCCCHHHHHHHHHHccCCCC---CCH---HHHHHHHHHHHHHcCCccc-ccccccCCCCCCCCHHHHHHHHHHHHHhhC
Q 048028 57 FPMLTVEETLMFAAEFRLPRS---VTK---TKKQERVEALINQLGLRSA-AKTFIGDERHRGVSGGERRRVSIGIHIIHD 129 (592)
Q Consensus 57 ~~~lTV~E~l~f~~~l~~~~~---~~~---~~~~~~v~~~l~~lgL~~~-~~~~vg~~~~~~LSgGerqRv~ia~~L~~~ 129 (592)
+..+||.|++.|...+.++.. ..+ ++..+++ +.++.+||... .|+.++ .|||||||||.||++|..+
T Consensus 449 ~~~ltV~e~~~f~e~l~l~~~~~~i~~~~~~ei~~Rl-~~L~~vGL~~l~ldR~~~-----tLSGGEkQRV~LA~aL~~~ 522 (972)
T 2r6f_A 449 VTAMSVTEALAFFDGLELTEKEAQIARLILREIRDRL-GFLQNVGLDYLTLSRSAG-----TLSGGEAQRIRLATQIGSR 522 (972)
T ss_dssp HHTSBHHHHHHHHHHCCCCHHHHHHSHHHHHHHHHHH-HHHHHHTCTTSBSSSBGG-----GCCHHHHHHHHHHHHHTTC
T ss_pred HhhCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH-HHhhhCCCCccccCCccc-----cCCHHHHHHHHHHHHHhhC
Confidence 356899999999776653310 000 2334555 45889999864 555554 5999999999999999998
Q ss_pred C--cEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCChhHHHhhhceEEEe------cCCeEeeecChhhH
Q 048028 130 P--ILLFLDEPTSGLDSTSAFMVVNVLQRIAKSGSIVIMSIHQPSYRILSLLDRLIIL------SHGQSVYNETPSNL 199 (592)
Q Consensus 130 p--~lllLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~H~~~~~i~~~~D~v~ll------~~G~~v~~g~~~~~ 199 (592)
| ++|+|||||+|||+.....+.+.|++|++.|.|||+++|+++ . ...+|+|++| ++|++++.|+++++
T Consensus 523 ~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHdl~-~-i~~ADrIi~LgpgaG~~gG~iv~~G~~~e~ 598 (972)
T 2r6f_A 523 LTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDED-T-MLAADYLIDIGPGAGIHGGEVVAAGTPEEV 598 (972)
T ss_dssp CCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCCHH-H-HHSCSEEEEECSSSGGGCCSEEEEECTTTT
T ss_pred CCCCEEEEeCcccCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-H-HHhCCEEEEeCCCccCCCCEEEEecCHHHH
Confidence 5 999999999999999999999999999888999999999986 3 4679999999 78999999999876
No 79
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=99.78 E-value=1.1e-20 Score=198.58 Aligned_cols=161 Identities=17% Similarity=0.192 Sum_probs=123.4
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCcc-------cc--cceeEEEccCCC-CCCCCCHHHHHHHHH
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLESK-------LL--KIISAYVMQDDL-LFPMLTVEETLMFAA 70 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~~-------~~--~~~~~yv~Q~~~-l~~~lTV~E~l~f~~ 70 (592)
++|+||||||||||++.|+|++++. +|+|.++|.++.+. .+ +..++|++|++. ++|.+||+|++.++.
T Consensus 160 i~lvG~nGsGKTTll~~Lag~l~~~--~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~~tv~e~l~~~~ 237 (359)
T 2og2_A 160 IMIVGVNGGGKTTSLGKLAHRLKNE--GTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAATVLSKAVKRGK 237 (359)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHHHT--TCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHHHHHHHHHHHHH
T ss_pred EEEEcCCCChHHHHHHHHHhhcccc--CCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccChhhhHHHHHHHHH
Confidence 4799999999999999999998753 59999999887531 11 345899999988 899999999998864
Q ss_pred HccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCc--EEEEeCCCCCCCHHHHH
Q 048028 71 EFRLPRSVTKTKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPI--LLFLDEPTSGLDSTSAF 148 (592)
Q Consensus 71 ~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~--lllLDEPtsgLD~~~~~ 148 (592)
... .. ..+++.+|+.+..+.++. +|| |||++||++|+.+|+ +|+|| ||+|||+.+..
T Consensus 238 ~~~----~d--------~~lldt~Gl~~~~~~~~~-----eLS---kqr~~iaral~~~P~e~lLvLD-pttglD~~~~~ 296 (359)
T 2og2_A 238 EEG----YD--------VVLCDTSGRLHTNYSLME-----ELI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQA 296 (359)
T ss_dssp HTT----CS--------EEEEECCCCSSCCHHHHH-----HHH---HHHHHHHHHSTTCCSEEEEEEE-GGGGGGGHHHH
T ss_pred hCC----CH--------HHHHHhcCCChhhhhHHH-----HHH---HHHHHHHHHHhcCCCceEEEEc-CCCCCCHHHHH
Confidence 211 00 135566788776665554 499 999999999999999 99999 99999998653
Q ss_pred HHHHHHHHHHH-cCCEEEEEecCCh--------hHHHhhhceEEEecCCeE
Q 048028 149 MVVNVLQRIAK-SGSIVIMSIHQPS--------YRILSLLDRLIILSHGQS 190 (592)
Q Consensus 149 ~i~~~l~~la~-~g~tvi~~~H~~~--------~~i~~~~D~v~ll~~G~~ 190 (592)
+++.+ .|.|+|++||... +.+....+.|..+..|+.
T Consensus 297 ------~~~~~~~g~t~iiiThlD~~~~gG~~lsi~~~~~~pI~~ig~Ge~ 341 (359)
T 2og2_A 297 ------REFNEVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEA 341 (359)
T ss_dssp ------HHHHHHTCCCEEEEESCTTCSCTHHHHHHHHHHCCCEEEEECSSS
T ss_pred ------HHHHHhcCCeEEEEecCcccccccHHHHHHHHhCCCEEEEeCCCC
Confidence 44554 4899999999421 123345678888888864
No 80
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.77 E-value=2.4e-19 Score=206.19 Aligned_cols=110 Identities=21% Similarity=0.424 Sum_probs=97.0
Q ss_pred HHHHHHHHHHHHcCCccc-ccccccCCCCCCCCHHHHHHHHHHHHHhhCC--cEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 048028 82 KKQERVEALINQLGLRSA-AKTFIGDERHRGVSGGERRRVSIGIHIIHDP--ILLFLDEPTSGLDSTSAFMVVNVLQRIA 158 (592)
Q Consensus 82 ~~~~~v~~~l~~lgL~~~-~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p--~lllLDEPtsgLD~~~~~~i~~~l~~la 158 (592)
+..++++ .++.+||.+. .++.+ ..|||||||||.||++|..+| ++|+|||||+|||+.....+.+.|++|+
T Consensus 355 ei~~rl~-~L~~vGL~~l~l~r~~-----~tLSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~~~~L~~~l~~L~ 428 (842)
T 2vf7_A 355 DLVKRLD-VLLHLGLGYLGLDRST-----PTLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEALLSALENLK 428 (842)
T ss_dssp HHHHHHH-HHHHTTCTTSBTTCBG-----GGSCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHH
T ss_pred HHHHHHH-HHHhCCCCcCCccCCc-----CcCCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHHHHHHHHHHHHHHH
Confidence 4456666 6889999864 55554 469999999999999999999 5999999999999999999999999998
Q ss_pred HcCCEEEEEecCChhHHHhhhceEEEe------cCCeEeeecChhhH
Q 048028 159 KSGSIVIMSIHQPSYRILSLLDRLIIL------SHGQSVYNETPSNL 199 (592)
Q Consensus 159 ~~g~tvi~~~H~~~~~i~~~~D~v~ll------~~G~~v~~g~~~~~ 199 (592)
+.|.|||+++|++. +.+.+|+|++| ++|++++.|+++++
T Consensus 429 ~~G~TVIvVeHdl~--~l~~aD~ii~lgpgaG~~~G~iv~~g~~~~~ 473 (842)
T 2vf7_A 429 RGGNSLFVVEHDLD--VIRRADWLVDVGPEAGEKGGEILYSGPPEGL 473 (842)
T ss_dssp TTTCEEEEECCCHH--HHTTCSEEEEECSSSGGGCCSEEEEECGGGG
T ss_pred HcCCEEEEEcCCHH--HHHhCCEEEEeCCCcccCCCEEEEecCHHHH
Confidence 88999999999985 56789999999 78999999999875
No 81
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.77 E-value=7e-19 Score=203.40 Aligned_cols=134 Identities=20% Similarity=0.333 Sum_probs=110.3
Q ss_pred CCCCCCHHHHHHHHHHccCCCCCCH----------HHHHHHHHHHHHHcCCccc-ccccccCCCCCCCCHHHHHHHHHHH
Q 048028 56 LFPMLTVEETLMFAAEFRLPRSVTK----------TKKQERVEALINQLGLRSA-AKTFIGDERHRGVSGGERRRVSIGI 124 (592)
Q Consensus 56 l~~~lTV~E~l~f~~~l~~~~~~~~----------~~~~~~v~~~l~~lgL~~~-~~~~vg~~~~~~LSgGerqRv~ia~ 124 (592)
-+..+||.|.+.|...+. ++. ++..+++ +.++.+||... .|+.+ ..|||||||||.||+
T Consensus 465 q~~~ltV~e~l~f~enl~----l~~~~~~i~~~i~~ei~~Rl-~~L~~vGL~~l~l~r~~-----~tLSGGEkQRV~LA~ 534 (993)
T 2ygr_A 465 EVCELSIADCADFLNALT----LGPREQAIAGQVLKEIRSRL-GFLLDVGLEYLSLSRAA-----ATLSGGEAQRIRLAT 534 (993)
T ss_dssp CSSHHHHHHHHHTTTTTT----SCHHHHHHHHHHHHHHHHHH-HHHHHHTGGGSCTTCBG-----GGCCHHHHHHHHHHH
T ss_pred HHhhCCHHHHHHHHHhcC----CCHHHhHHHHHHHHHHHHHH-HHHhhCCCCccccCCCc-----ccCCHHHHHHHHHHH
Confidence 456689999999854443 233 2334455 35788999754 55554 469999999999999
Q ss_pred HHhhC--CcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCChhHHHhhhceEEEe------cCCeEeeecCh
Q 048028 125 HIIHD--PILLFLDEPTSGLDSTSAFMVVNVLQRIAKSGSIVIMSIHQPSYRILSLLDRLIIL------SHGQSVYNETP 196 (592)
Q Consensus 125 ~L~~~--p~lllLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~H~~~~~i~~~~D~v~ll------~~G~~v~~g~~ 196 (592)
+|..+ |++|+|||||+|||+.....+.+.|++|++.|.|||+++|++. . ...+|+|++| ++|++++.|++
T Consensus 535 aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHdl~-~-i~~ADrIi~Lgp~aG~~gG~iv~~G~~ 612 (993)
T 2ygr_A 535 QIGSGLVGVLYVLDEPSIGLHQRDNRRLIETLTRLRDLGNTLIVVEHDED-T-IEHADWIVDIGPGAGEHGGRIVHSGPY 612 (993)
T ss_dssp HHTTCCCSCEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHH-H-HHTCSEEEEECSSSGGGCCSCCEEECH
T ss_pred HHhhCCCCcEEEEeCcccCCCHHHHHHHHHHHHHHHHcCCEEEEECCCHH-H-HHhCCEEEEecCccccCCCEEEEeeCH
Confidence 99998 5899999999999999999999999999989999999999985 3 5689999999 68999999999
Q ss_pred hhHHH
Q 048028 197 SNLAQ 201 (592)
Q Consensus 197 ~~~~~ 201 (592)
+++.+
T Consensus 613 ~e~~~ 617 (993)
T 2ygr_A 613 DELLR 617 (993)
T ss_dssp HHHHH
T ss_pred HHhhh
Confidence 88743
No 82
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=99.77 E-value=5.6e-19 Score=185.72 Aligned_cols=86 Identities=15% Similarity=0.145 Sum_probs=76.8
Q ss_pred CCCCC-CCCHHHHHHHHHHHHHh---------hCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCChhHH
Q 048028 106 DERHR-GVSGGERRRVSIGIHII---------HDPILLFLDEPTSGLDSTSAFMVVNVLQRIAKSGSIVIMSIHQPSYRI 175 (592)
Q Consensus 106 ~~~~~-~LSgGerqRv~ia~~L~---------~~p~lllLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~H~~~~~i 175 (592)
+..++ .+|||||||++||++|+ .+|+||||||||++||+..+..+++.++++. .|+|+++| ++ +
T Consensus 259 ~~~~~~~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~---qt~i~~th-~~-~- 332 (359)
T 2o5v_A 259 DFPASDYASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVP---QAIVTGTE-LA-P- 332 (359)
T ss_dssp TEEHHHHCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSS---EEEEEESS-CC-T-
T ss_pred CcchhhhCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcC---cEEEEEEe-cc-c-
Confidence 34456 79999999999999999 8999999999999999999999999998874 68888999 44 2
Q ss_pred HhhhceEEEecCCeEeeecChhhH
Q 048028 176 LSLLDRLIILSHGQSVYNETPSNL 199 (592)
Q Consensus 176 ~~~~D~v~ll~~G~~v~~g~~~~~ 199 (592)
.+|++++|++|+++..|+++++
T Consensus 333 --~~~~i~~l~~G~i~~~g~~~~~ 354 (359)
T 2o5v_A 333 --GAALTLRAQAGRFTPVADEEMQ 354 (359)
T ss_dssp --TCSEEEEEETTEEEECCCTTTS
T ss_pred --cCCEEEEEECCEEEecCCHHHH
Confidence 8999999999999999998765
No 83
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=99.77 E-value=1.4e-19 Score=188.68 Aligned_cols=119 Identities=19% Similarity=0.218 Sum_probs=93.6
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCc-ccccceeEEEccCCCCCCCCCHHHHHHHHHHccCCCCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLES-KLLKIISAYVMQDDLLFPMLTVEETLMFAAEFRLPRSVT 79 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~-~~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~ 79 (592)
++|+||||||||||+|+|+|++++. +|.|.++|.+... ...++.+++++
T Consensus 174 v~i~G~~GsGKTTll~~l~g~~~~~--~g~i~i~~~~e~~~~~~~~~i~~~~---------------------------- 223 (330)
T 2pt7_A 174 VIVCGGTGSGKTTYIKSIMEFIPKE--ERIISIEDTEEIVFKHHKNYTQLFF---------------------------- 223 (330)
T ss_dssp EEEEESTTSCHHHHHHHGGGGSCTT--SCEEEEESSCCCCCSSCSSEEEEEC----------------------------
T ss_pred EEEECCCCCCHHHHHHHHhCCCcCC--CcEEEECCeeccccccchhEEEEEe----------------------------
Confidence 4799999999999999999998754 5999999864211 11223333332
Q ss_pred HHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Q 048028 80 KTKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVNVLQRIAK 159 (592)
Q Consensus 80 ~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~la~ 159 (592)
+ |||+||++||++|..+|++|+|||||+ .++.+.|+.+..
T Consensus 224 -------------------------------g--gg~~~r~~la~aL~~~p~ilildE~~~-------~e~~~~l~~~~~ 263 (330)
T 2pt7_A 224 -------------------------------G--GNITSADCLKSCLRMRPDRIILGELRS-------SEAYDFYNVLCS 263 (330)
T ss_dssp -------------------------------B--TTBCHHHHHHHHTTSCCSEEEECCCCS-------THHHHHHHHHHT
T ss_pred -------------------------------C--CChhHHHHHHHHhhhCCCEEEEcCCCh-------HHHHHHHHHHhc
Confidence 1 899999999999999999999999998 235677777765
Q ss_pred cCCEEEEEecCChhHHHhhhceEEEecCCeEe
Q 048028 160 SGSIVIMSIHQPSYRILSLLDRLIILSHGQSV 191 (592)
Q Consensus 160 ~g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v 191 (592)
.+.|+|+|+|+++ +.+.+||+++|.+|+..
T Consensus 264 g~~tvi~t~H~~~--~~~~~dri~~l~~g~~~ 293 (330)
T 2pt7_A 264 GHKGTLTTLHAGS--SEEAFIRLANMSSSNSA 293 (330)
T ss_dssp TCCCEEEEEECSS--HHHHHHHHHHHHHTSGG
T ss_pred CCCEEEEEEcccH--HHHHhhhheehhcCCcc
Confidence 4458999999987 67889999999988643
No 84
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.76 E-value=4.3e-21 Score=198.55 Aligned_cols=154 Identities=9% Similarity=0.089 Sum_probs=108.5
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCcccccceeEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCH
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLESKLLKIISAYVMQDDLLFPMLTVEETLMFAAEFRLPRSVTK 80 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~ 80 (592)
+||+||||||||||+++|+|++++. .|. +.++||+|++.+++. |++||+.+... ...+.
T Consensus 93 vgI~G~sGsGKSTL~~~L~gll~~~--~G~--------------~~v~~v~qd~~~~~~-t~~e~~~~~~~----~g~~~ 151 (312)
T 3aez_A 93 IGVAGSVAVGKSTTARVLQALLARW--DHH--------------PRVDLVTTDGFLYPN-AELQRRNLMHR----KGFPE 151 (312)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHHTS--TTC--------------CCEEEEEGGGGBCCH-HHHHHTTCTTC----TTSGG
T ss_pred EEEECCCCchHHHHHHHHHhhcccc--CCC--------------CeEEEEecCccCCcc-cHHHHHHHHHh----cCCCh
Confidence 5899999999999999999998753 231 347999999999998 99999854211 12233
Q ss_pred HHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc
Q 048028 81 TKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVNVLQRIAKS 160 (592)
Q Consensus 81 ~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~la~~ 160 (592)
....+++.+.++.++ .+..+..+ ..|||||+||+++|++++.+|+|||||||+..+|+.. ..+.+.
T Consensus 152 ~~d~~~~~~~L~~l~-~~~~~~~~-----~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~~~--------~~l~~~ 217 (312)
T 3aez_A 152 SYNRRALMRFVTSVK-SGSDYACA-----PVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTGPT--------LMVSDL 217 (312)
T ss_dssp GBCHHHHHHHHHHHH-TTCSCEEE-----EEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCCSS--------CCGGGG
T ss_pred HHHHHHHHHHHHHhC-CCcccCCc-----ccCChhhhhhhhhHHHhccCCCEEEECCccccCCcch--------HHHHHh
Confidence 334567888899888 54444444 3599999999999999999999999999999998621 112221
Q ss_pred CCEEEEEecCChhHHHhhhceEEEecCCe
Q 048028 161 GSIVIMSIHQPSYRILSLLDRLIILSHGQ 189 (592)
Q Consensus 161 g~tvi~~~H~~~~~i~~~~D~v~ll~~G~ 189 (592)
--.+|++.|+.+.......+|.+.+.+|+
T Consensus 218 ~D~~I~V~a~~~~~~~R~i~R~~~~rd~~ 246 (312)
T 3aez_A 218 FDFSLYVDARIEDIEQWYVSRFLAMRTTA 246 (312)
T ss_dssp CSEEEEEEECHHHHHHHHHHHHHHHTTTG
T ss_pred cCcEEEEECCHHHHHHHHHHHHHHHHhcc
Confidence 12345555655443444556655555443
No 85
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=99.76 E-value=1.6e-21 Score=210.53 Aligned_cols=162 Identities=16% Similarity=0.127 Sum_probs=127.2
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCE---ecCc--------ccccceeEEEccC-CCCCCCCCHHHHHHH
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGE---VLES--------KLLKIISAYVMQD-DLLFPMLTVEETLMF 68 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~---~~~~--------~~~~~~~~yv~Q~-~~l~~~lTV~E~l~f 68 (592)
++|+|||||||||||++|+|..++ .+|.|.++|+ ++.. ...++.++|++|+ +.+++.+||.+|+.+
T Consensus 160 ~~IvG~sGsGKSTLl~~Iag~~~~--~~G~i~~~G~r~~ev~~~~~~~~~~~~l~r~i~~v~q~~~~~~~~~~v~~~~~~ 237 (438)
T 2dpy_A 160 MGLFAGSGVGKSVLLGMMARYTRA--DVIVVGLIGERGREVKDFIENILGPDGRARSVVIAAPADVSPLLRMQGAAYATR 237 (438)
T ss_dssp EEEEECTTSSHHHHHHHHHHHSCC--SEEEEEEESCCHHHHHHHHHTTTHHHHHHTEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhcccCC--CeEEEEEeceecHHHHHHHHhhccccccCceEEEEECCCCCHHHHHHHHHHHHH
Confidence 489999999999999999999875 4699999998 4432 2355678999995 567788899999988
Q ss_pred HHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHH
Q 048028 69 AAEFRLPRSVTKTKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAF 148 (592)
Q Consensus 69 ~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~ 148 (592)
.++.... ..+++ ....| ....+|+|| |||+|| +.+|++ |+|||+....
T Consensus 238 ~ae~~~~-------~~~~v---------~~~ld------~l~~lS~g~-qrvslA---l~~p~~------t~glD~~~~~ 285 (438)
T 2dpy_A 238 IAEDFRD-------RGQHV---------LLIMD------SLTRYAMAQ-REIALA---IGEPPA------TKGYPPSVFA 285 (438)
T ss_dssp HHHHHHT-------TTCEE---------EEEEE------CHHHHHHHH-HHHHHH---TTCCCC------SSSCCTTHHH
T ss_pred HHHHHHh-------CCCCH---------HHHHH------hHHHHHHHH-HHHHHH---hCCCcc------cccCCHHHHH
Confidence 7643210 00000 01111 134599999 999999 888887 9999999999
Q ss_pred HHHHHHHHHHH---c-CC-----EEEEEecCChhHHHhhhceEEEecCCeEeeecChhhH
Q 048028 149 MVVNVLQRIAK---S-GS-----IVIMSIHQPSYRILSLLDRLIILSHGQSVYNETPSNL 199 (592)
Q Consensus 149 ~i~~~l~~la~---~-g~-----tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~~~~ 199 (592)
.+.++++++.+ + |+ ||++++||++ ..++|++++|.+|+++..|+++++
T Consensus 286 ~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~---~~iad~v~~l~dG~Ivl~~~~~~~ 342 (438)
T 2dpy_A 286 KLPALVERAGNGIHGGGSITAFYTVLTEGDDQQ---DPIADSARAILDGHIVLSRRLAEA 342 (438)
T ss_dssp HHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSC---CHHHHHHHHHSSEEEEECHHHHHT
T ss_pred HHHHHHHHHHhccCCCCcccceeEEEEeCCCcc---chhhceEEEEeCcEEEEeCCHHHc
Confidence 99999999876 3 64 8999999997 467999999999999999888765
No 86
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=99.75 E-value=1.5e-18 Score=159.90 Aligned_cols=82 Identities=28% Similarity=0.413 Sum_probs=73.5
Q ss_pred CCCCCCCCHHHHHHHHHH------HHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCChhHHHhhh
Q 048028 106 DERHRGVSGGERRRVSIG------IHIIHDPILLFLDEPTSGLDSTSAFMVVNVLQRIAKSGSIVIMSIHQPSYRILSLL 179 (592)
Q Consensus 106 ~~~~~~LSgGerqRv~ia------~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~H~~~~~i~~~~ 179 (592)
+..+..||||||||++|| ++|+.+|++++|||||+|||+.++..+.+.|+++.++|+|||+++|++. +.+.+
T Consensus 52 ~~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~--~~~~~ 129 (148)
T 1f2t_B 52 ERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEE--LKDAA 129 (148)
T ss_dssp EECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEESCGG--GGGGC
T ss_pred cCChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEEChHH--HHHhC
Confidence 345678999999999886 8999999999999999999999999999999999877999999999983 67899
Q ss_pred ceEEEec--CCe
Q 048028 180 DRLIILS--HGQ 189 (592)
Q Consensus 180 D~v~ll~--~G~ 189 (592)
|++++|+ +|.
T Consensus 130 d~ii~l~~~~g~ 141 (148)
T 1f2t_B 130 DHVIRISLENGS 141 (148)
T ss_dssp SEEEEEEEETTE
T ss_pred CEEEEEEcCCCe
Confidence 9999994 554
No 87
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=99.73 E-value=7.6e-19 Score=180.17 Aligned_cols=169 Identities=16% Similarity=0.120 Sum_probs=106.6
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCcee-EEEECCEecCcccccceeEEEccCCCCCCCCCHHHHHHHHHHccCCCCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQG-AVTLNGEVLESKLLKIISAYVMQDDLLFPMLTVEETLMFAAEFRLPRSVT 79 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G-~I~i~g~~~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~ 79 (592)
++|+||||||||||++.|+|...+. +| .|.+.+.+.+....++.+.++.|+.. +++.+++.... .+
T Consensus 38 ~~i~G~~G~GKTTl~~~ia~~~~~~--~G~~v~~~~~e~~~~~~~~r~~~~~~~~~----~~~~~~l~~~~-------~~ 104 (296)
T 1cr0_A 38 IMVTSGSGMGKSTFVRQQALQWGTA--MGKKVGLAMLEESVEETAEDLIGLHNRVR----LRQSDSLKREI-------IE 104 (296)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHT--SCCCEEEEESSSCHHHHHHHHHHHHTTCC----GGGCHHHHHHH-------HH
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHH--cCCeEEEEeCcCCHHHHHHHHHHHHcCCC----hhhccccccCC-------CC
Confidence 4799999999999999999987643 36 66554433333223233333333321 12233443221 11
Q ss_pred HHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHH-HHHHHHHHHHhhCCcEEEEeCCCC---C---CCH-HHHHHHH
Q 048028 80 KTKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGE-RRRVSIGIHIIHDPILLFLDEPTS---G---LDS-TSAFMVV 151 (592)
Q Consensus 80 ~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGe-rqRv~ia~~L~~~p~lllLDEPts---g---LD~-~~~~~i~ 151 (592)
.++.++.++++++..++. .+ ..+..+|.+| +||+. |+++..+|+++++||||+ + +|. ....+++
T Consensus 105 ~~~~~~~~~~~l~~~~l~--i~-----~~~~~~~~~~l~~~~~-a~~~~~~p~llilDept~~~~~~~~~d~~~~~~~i~ 176 (296)
T 1cr0_A 105 NGKFDQWFDELFGNDTFH--LY-----DSFAEAETDRLLAKLA-YMRSGLGCDVIILDHISIVVSASGESDERKMIDNLM 176 (296)
T ss_dssp HTHHHHHHHHHHSSSCEE--EE-----CCCCSCCHHHHHHHHH-HHHHTTCCSEEEEEEEC-----------CHHHHHHH
T ss_pred HHHHHHHHHHHhccCCEE--EE-----CCCCCCCHHHHHHHHH-HHHHhcCCCEEEEcCccccCCCCCCCCHHHHHHHHH
Confidence 223334455554432321 11 1123588998 66666 999999999999999999 5 455 6678899
Q ss_pred HHHHHHHHc-CCEEEEEecCCh-h--------------------HHHhhhceEEEecCCeE
Q 048028 152 NVLQRIAKS-GSIVIMSIHQPS-Y--------------------RILSLLDRLIILSHGQS 190 (592)
Q Consensus 152 ~~l~~la~~-g~tvi~~~H~~~-~--------------------~i~~~~D~v~ll~~G~~ 190 (592)
+.|++++++ |.|||+++|+.. . .+...||+|++|++|+.
T Consensus 177 ~~L~~la~~~~~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~aD~vi~L~~~~~ 237 (296)
T 1cr0_A 177 TKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALERNQQ 237 (296)
T ss_dssp HHHHHHHHHHCCEEEEEEECC-----------------CCC---CHHHHCSEEEEEEEC--
T ss_pred HHHHHHHHHhCCeEEEEEecCccccccccccCCCCCHHHhcccHHhHhhCcEEEEEecCcc
Confidence 999999875 999999999962 2 47789999999998874
No 88
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.72 E-value=5e-18 Score=188.04 Aligned_cols=147 Identities=13% Similarity=0.132 Sum_probs=110.1
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCcccccceeEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCH
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLESKLLKIISAYVMQDDLLFPMLTVEETLMFAAEFRLPRSVTK 80 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~ 80 (592)
++|+||||||||||++.++|...+. |+ +.+.|++|++. .++.++. .++ ..+
T Consensus 284 ~~i~G~~GsGKSTLl~~l~g~~~~~---G~--------------~vi~~~~ee~~----~~l~~~~---~~~----g~~- 334 (525)
T 1tf7_A 284 ILATGATGTGKTLLVSRFVENACAN---KE--------------RAILFAYEESR----AQLLRNA---YSW----GMD- 334 (525)
T ss_dssp EEEEECTTSSHHHHHHHHHHHHHTT---TC--------------CEEEEESSSCH----HHHHHHH---HTT----SCC-
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHhC---CC--------------CEEEEEEeCCH----HHHHHHH---HHc----CCC-
Confidence 4799999999999999999986531 32 12455666541 1222222 111 112
Q ss_pred HHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHH-----HHHHHHHHHH
Q 048028 81 TKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDST-----SAFMVVNVLQ 155 (592)
Q Consensus 81 ~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~-----~~~~i~~~l~ 155 (592)
+++ +...|+.+..+. .+..|||||+||+.+|+++..+|+++++| ||+|||.. .+..+.++++
T Consensus 335 ------~~~-~~~~g~~~~~~~-----~p~~LS~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~~~~i~~ll~ 401 (525)
T 1tf7_A 335 ------FEE-MERQNLLKIVCA-----YPESAGLEDHLQIIKSEINDFKPARIAID-SLSALARGVSNNAFRQFVIGVTG 401 (525)
T ss_dssp ------HHH-HHHTTSEEECCC-----CGGGSCHHHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHHHHHHHHHHH
T ss_pred ------HHH-HHhCCCEEEEEe-----ccccCCHHHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhCChHHHHHHHHHHHH
Confidence 112 224566555443 34569999999999999999999999999 99999999 9999999999
Q ss_pred HHHHcCCEEEEEecCCh---------hHHHhhhceEEEecCCe
Q 048028 156 RIAKSGSIVIMSIHQPS---------YRILSLLDRLIILSHGQ 189 (592)
Q Consensus 156 ~la~~g~tvi~~~H~~~---------~~i~~~~D~v~ll~~G~ 189 (592)
.+++.|.|||+++|++. ..+..++|+|++|++|+
T Consensus 402 ~l~~~g~tvilvsh~~~~~~~~~~~~~~l~~~~D~vi~L~~ge 444 (525)
T 1tf7_A 402 YAKQEEITGLFTNTSDQFMGAHSITDSHISTITDTIILLQYVE 444 (525)
T ss_dssp HHHHTTCEEEEEEECSSSSCCCSSCSSCCTTTCSEEEEEEEEE
T ss_pred HHHhCCCEEEEEECcccccCcccccCcccceeeeEEEEEEEEE
Confidence 99888999999999981 24678899999999886
No 89
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.72 E-value=6.9e-22 Score=194.27 Aligned_cols=162 Identities=14% Similarity=0.112 Sum_probs=109.2
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCcc----cccceeEEEccCCCCCCCCCH-HHHHHHHHHccCC
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLESK----LLKIISAYVMQDDLLFPMLTV-EETLMFAAEFRLP 75 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~~----~~~~~~~yv~Q~~~l~~~lTV-~E~l~f~~~l~~~ 75 (592)
++|+||||||||||+|+|+|+. + |+|.+ |.+.+.. ..++.++|++|++.+++.++. .+++.+. .+...
T Consensus 26 ~~lvGpsGsGKSTLl~~L~g~~-p----G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~-~~~~~ 98 (218)
T 1z6g_A 26 LVICGPSGVGKGTLIKKLLNEF-P----NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFEDKLKNEDFLEYD-NYANN 98 (218)
T ss_dssp EEEECSTTSSHHHHHHHHHHHS-T----TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHHHHHHTTCEEEEE-EETTE
T ss_pred EEEECCCCCCHHHHHHHHHhhC-C----CcEEE-eecccCCCCCcccccCCeEEECCHHHHHHhhhccchhhhh-hcccc
Confidence 4899999999999999999986 2 88988 7765332 124567999998876655431 1121110 00000
Q ss_pred -CCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHH-----HHHHhhCCcEEEEeCCCCCCCHHHHHH
Q 048028 76 -RSVTKTKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSI-----GIHIIHDPILLFLDEPTSGLDSTSAFM 149 (592)
Q Consensus 76 -~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~i-----a~~L~~~p~lllLDEPtsgLD~~~~~~ 149 (592)
...+ .+.++++++...+. ..+ ..+|||||||++| +++++.+|++++|||||+++|..+...
T Consensus 99 ~~g~~----~~~i~~~l~~~~~~-il~--------~~lsggq~qR~~i~~~~~~~~ll~~~~~~~Lde~~~~~d~~~~~~ 165 (218)
T 1z6g_A 99 FYGTL----KSEYDKAKEQNKIC-LFE--------MNINGVKQLKKSTHIKNALYIFIKPPSTDVLLSRLLTRNTENQEQ 165 (218)
T ss_dssp EEEEE----HHHHHHHHHTTCEE-EEE--------ECHHHHHHHTTCSSCCSCEEEEEECSCHHHHHHHHHHTCCCCHHH
T ss_pred cCCCc----HHHHHHHHhCCCcE-EEE--------ecHHHHHHHHHHhcCCCcEEEEEeCcCHHHHHHHHHhcCCCCHHH
Confidence 0111 23466677654321 111 3599999999999 899999999999999999999999999
Q ss_pred HHHHHHHHHHc-------CCEEEEEecCChhHHHhhhceEE
Q 048028 150 VVNVLQRIAKS-------GSIVIMSIHQPSYRILSLLDRLI 183 (592)
Q Consensus 150 i~~~l~~la~~-------g~tvi~~~H~~~~~i~~~~D~v~ 183 (592)
+.+.++++.++ +...|+++|+++ ++++..|+++
T Consensus 166 i~~~l~~~~~~~~~~h~~~~d~iiv~~~~~-ea~~~~~~ii 205 (218)
T 1z6g_A 166 IQKRMEQLNIELHEANLLNFNLSIINDDLT-LTYQQLKNYL 205 (218)
T ss_dssp HHHHHHHHHHHHHHHTTSCCSEEEECSSHH-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcccCCCEEEECCCHH-HHHHHHHHHH
Confidence 99988887542 344555566554 4555555554
No 90
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=99.70 E-value=1.1e-18 Score=173.54 Aligned_cols=155 Identities=14% Similarity=0.088 Sum_probs=98.0
Q ss_pred CEEECCCCCcHHHHHHHHh--CCCCCCCceeEEEECCEecCcc--cccceeEEEccCCCCCCCCCHHHHHHHHHHccCCC
Q 048028 1 MAILGASGAGKTTLMDALA--GRIEKESLQGAVTLNGEVLESK--LLKIISAYVMQDDLLFPMLTVEETLMFAAEFRLPR 76 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~--g~~~~~~~~G~I~i~g~~~~~~--~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~~~ 76 (592)
++|+||||||||||+++|+ |..+++ +|.+.+++...... ...+.++|++|+....+.+++.++.......
T Consensus 33 ~~l~GpnGsGKSTLl~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~---- 106 (251)
T 2ehv_A 33 VLLTGGTGTGKTTFAAQFIYKGAEEYG--EPGVFVTLEERARDLRREMASFGWDFEKYEKEGKIAIVDGVSSVVGL---- 106 (251)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHHHHC--CCEEEEESSSCHHHHHHHHHTTTCCHHHHHHTTSEEEEC------------
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHhCC--CeEEEEEccCCHHHHHHHHHHcCCChHHHhhcCCEEEEEcccccccc----
Confidence 4899999999999999999 653322 36777776543221 1223457777766555555555543221100
Q ss_pred CCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCC-----HHHHHHHH
Q 048028 77 SVTKTKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLD-----STSAFMVV 151 (592)
Q Consensus 77 ~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD-----~~~~~~i~ 151 (592)
........+ ...+.++..+......-..+|+++++||||++|| +..+..+.
T Consensus 107 ------~~~~~~~~~------------------~~~~~~~~~~~~~~~l~~~~p~~lilDep~~~ld~~~d~~~~~~~l~ 162 (251)
T 2ehv_A 107 ------PSEEKFVLE------------------DRFNVDNFLRYIYRVVKAINAKRLVIDSIPSIALRLEEERKIREVLL 162 (251)
T ss_dssp -----------------------------------CCHHHHHHHHHHHHHHTTCSEEEEECHHHHHHHSSSGGGHHHHHH
T ss_pred ------ccccceecc------------------CcccHHHHHHHHHHHHHhhCCCEEEEccHHHHHhhcCCHHHHHHHHH
Confidence 000000000 1133444444444444467999999999999997 66677799
Q ss_pred HHHHHHHHcCCEEEEEecCChhHH---------Hhhh-ceEEEec
Q 048028 152 NVLQRIAKSGSIVIMSIHQPSYRI---------LSLL-DRLIILS 186 (592)
Q Consensus 152 ~~l~~la~~g~tvi~~~H~~~~~i---------~~~~-D~v~ll~ 186 (592)
++++.++++|+|||+++|++. ++ ..+| |++++|+
T Consensus 163 ~l~~~l~~~g~tii~vtH~~~-~~~~~~~~~~i~~~~aD~vi~l~ 206 (251)
T 2ehv_A 163 KLNTILLEMGVTTILTTEAPD-PQHGKLSRYGIEEFIARGVIVLD 206 (251)
T ss_dssp HHHHHHHHHCCEEEEEECCC-----CCSSSSSCGGGGCSEEEEEE
T ss_pred HHHHHHHHCCCeEEEEECCCC-CCcccccccChhhEeeeEEEEEe
Confidence 999999888999999999987 45 5788 9999995
No 91
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=99.67 E-value=3.2e-18 Score=167.90 Aligned_cols=145 Identities=20% Similarity=0.149 Sum_probs=89.8
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCC-----ceeEEEECCEecCcccccceeEEEccCCCCCCCCCHHHHHHHHHHccCC
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKES-----LQGAVTLNGEVLESKLLKIISAYVMQDDLLFPMLTVEETLMFAAEFRLP 75 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~-----~~G~I~i~g~~~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~~ 75 (592)
++|+||||||||||+++|+|...+.+ ..|.+++++.+.. ..+.+++++|+..+.+. |+.||+.+.
T Consensus 28 ~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~---~~~~i~~~~~~~~~~~~-~~~~~~~~~------ 97 (231)
T 4a74_A 28 TEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF---RPERIREIAQNRGLDPD-EVLKHIYVA------ 97 (231)
T ss_dssp EEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCC---CHHHHHHHHHHTTSCHH-HHHHTEEEE------
T ss_pred EEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCC---CHHHHHHHHHHcCCCHH-HHhhcEEEE------
Confidence 47999999999999999999554322 2346666664321 01123344444333332 333333211
Q ss_pred CCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHH-HHHHHHHHHHhh-------CCcEEEEeCCCCCCCHHH-
Q 048028 76 RSVTKTKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGE-RRRVSIGIHIIH-------DPILLFLDEPTSGLDSTS- 146 (592)
Q Consensus 76 ~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGe-rqRv~ia~~L~~-------~p~lllLDEPtsgLD~~~- 146 (592)
...++++ ++++..+.+++. +|+++++||||+++|+..
T Consensus 98 ----------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~l~~~~~ 143 (231)
T 4a74_A 98 ----------------------------------RAFNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYI 143 (231)
T ss_dssp ----------------------------------ECCSHHHHHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHHHHHHSC
T ss_pred ----------------------------------ecCChHHHHHHHHHHHHHHHHhcccCCceeEEEECChHHHhccccC
Confidence 0123332 233455555555 899999999999999842
Q ss_pred -----------HHHHHHHHHHHHHc-CCEEEEEecCChh---HHHhhhceEEEecCCe
Q 048028 147 -----------AFMVVNVLQRIAKS-GSIVIMSIHQPSY---RILSLLDRLIILSHGQ 189 (592)
Q Consensus 147 -----------~~~i~~~l~~la~~-g~tvi~~~H~~~~---~i~~~~D~v~ll~~G~ 189 (592)
..++++.|++++++ |.|||+++|..+. .+...+|+++.|++|+
T Consensus 144 ~~~~~~~r~~~~~~~~~~l~~~~~~~g~tvi~vtH~~~~~g~~~~~~~d~~l~l~~~~ 201 (231)
T 4a74_A 144 GRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQANGGHILAHSATLRVYLRKGK 201 (231)
T ss_dssp STTHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC---------CCSEEEEEEECT
T ss_pred CCcchhHHHHHHHHHHHHHHHHHHHCCCeEEEEeecccCcchhhHhhceEEEEEEecC
Confidence 23788888888764 9999999995431 3778899999998763
No 92
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=99.67 E-value=1e-19 Score=176.90 Aligned_cols=140 Identities=19% Similarity=0.140 Sum_probs=110.5
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCcccccceeEEEccCCCCC--CCCCHHHHHHHHHHccCCCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLESKLLKIISAYVMQDDLLF--PMLTVEETLMFAAEFRLPRSV 78 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~~~~~~~~~yv~Q~~~l~--~~lTV~E~l~f~~~l~~~~~~ 78 (592)
++|+||||||||||+++|+|++.+ .++|++|++.++ +.+|++|++.+.. . .
T Consensus 9 i~i~G~~GsGKSTl~~~l~~~~~~---------------------~i~~v~~d~~~~~~~~~~~~~~~~~~~--~----~ 61 (211)
T 3asz_A 9 IGIAGGTASGKTTLAQALARTLGE---------------------RVALLPMDHYYKDLGHLPLEERLRVNY--D----H 61 (211)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHGG---------------------GEEEEEGGGCBCCCTTSCHHHHHHSCT--T----S
T ss_pred EEEECCCCCCHHHHHHHHHHHhCC---------------------CeEEEecCccccCcccccHHHhcCCCC--C----C
Confidence 589999999999999999998542 368999998876 6789998865421 1 1
Q ss_pred CHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHH----HHHHHHHHHHhhCCcEEEEeCCCCC-------CCHHHH
Q 048028 79 TKTKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGE----RRRVSIGIHIIHDPILLFLDEPTSG-------LDSTSA 147 (592)
Q Consensus 79 ~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGe----rqRv~ia~~L~~~p~lllLDEPtsg-------LD~~~~ 147 (592)
+.....+++.+.++.+++.+..+.++ ..+|+|| +||++++++++.+|+++++||||++ ||+...
T Consensus 62 ~~~~~~~~~~~~l~~~~~~~~~~~~~-----~~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~ld~~~~ 136 (211)
T 3asz_A 62 PDAFDLALYLEHAQALLRGLPVEMPV-----YDFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDLKVFVDADAD 136 (211)
T ss_dssp GGGBCHHHHHHHHHHHHTTCCEEECC-----EETTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTCSEEEEEECCHH
T ss_pred hhhhhHHHHHHHHHHHHcCCCcCCCc-----ccCcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhcCEEEEEeCCHH
Confidence 12223456778888888876655443 4589996 4788999999999999999999999 999999
Q ss_pred HHHHHHHHHHH-HcCCEEEEEecCCh
Q 048028 148 FMVVNVLQRIA-KSGSIVIMSIHQPS 172 (592)
Q Consensus 148 ~~i~~~l~~la-~~g~tvi~~~H~~~ 172 (592)
..+.+.+++.. ++|+|++.++|+..
T Consensus 137 ~~~~r~l~r~~~~~g~t~~~~~~~~~ 162 (211)
T 3asz_A 137 ERFIRRLKRDVLERGRSLEGVVAQYL 162 (211)
T ss_dssp HHHHHHHHHHHHHSCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 99999998864 56899998899743
No 93
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=99.66 E-value=3.7e-18 Score=191.86 Aligned_cols=165 Identities=16% Similarity=0.213 Sum_probs=111.3
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecC------cccccceeEEEccCCCCCCCCCHHHHHHHHHHccC
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLE------SKLLKIISAYVMQDDLLFPMLTVEETLMFAAEFRL 74 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~------~~~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~ 74 (592)
+||+|||||||||||++|+|+..|. .+|.|+++|.++. ...+++.++|++|+..+++.+||+|++.+......
T Consensus 48 iaIvG~nGsGKSTLL~~I~Gl~~P~-~sG~vt~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~~~~~~ 126 (608)
T 3szr_A 48 IAVIGDQSSGKSSVLEALSGVALPR-GSGIVTRCPLVLKLKKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKAQNAIA 126 (608)
T ss_dssp EECCCCTTSCHHHHHHHHHSCC--------CCCSCEEEEEEECSSSSCCEEEESCC---CCCCCHHHHHTTHHHHHHHHH
T ss_pred EEEECCCCChHHHHHHHHhCCCCCC-CCCeEEEcCEEEEEecCCccccceeEEeeecccccCCCHHHHHHHHHHHHHHhc
Confidence 4899999999999999999997651 4699999998852 12456778999999999999999999987643210
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCC------CCCCCHHHHH
Q 048028 75 PRSVTKTKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEP------TSGLDSTSAF 148 (592)
Q Consensus 75 ~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEP------tsgLD~~~~~ 148 (592)
... -++ | ++++.++.+....|+++++||| |+|||+....
T Consensus 127 ~~~----------------~~~----------------s---~~~i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~ 171 (608)
T 3szr_A 127 GEG----------------MGI----------------S---HELITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGY 171 (608)
T ss_dssp CSS----------------SCC----------------C---SCCEEEEEEESSSCCEEEEECCC------CCSSCSHHH
T ss_pred CCc----------------ccc----------------c---hHHHHHHhcCCCCCceeEeeCCCccccccCCCCHHHHH
Confidence 000 011 1 1111222222358999999999 9999999999
Q ss_pred HHHHHHHHHHHc--CCEEEEEecCCh------hHHHhhh-----ceEEEecCCeEeeecChhhHHH
Q 048028 149 MVVNVLQRIAKS--GSIVIMSIHQPS------YRILSLL-----DRLIILSHGQSVYNETPSNLAQ 201 (592)
Q Consensus 149 ~i~~~l~~la~~--g~tvi~~~H~~~------~~i~~~~-----D~v~ll~~G~~v~~g~~~~~~~ 201 (592)
++.++++++.++ +.++++++|+.+ ..+.... ..|.++.++..+..|+.+++.+
T Consensus 172 ~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~~~g~rtI~VlTK~Dlv~~g~~~~~~~ 237 (608)
T 3szr_A 172 KIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDPEGDRTIGILTKPDLVDKGTEDKVVD 237 (608)
T ss_dssp HHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHCSSCCSEEEEEECGGGSSSSSTTCCCC
T ss_pred HHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHhhcCCceEEEecchhhcCcccHHHHHH
Confidence 999999997543 567888899875 1222222 3478889998888887665543
No 94
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.64 E-value=6.8e-19 Score=194.95 Aligned_cols=153 Identities=15% Similarity=0.117 Sum_probs=103.2
Q ss_pred CEEECCCCCcHHHHHHH--HhCCCCCCCceeEEEECCEecCcc--cccceeEEEccCCCCCCCCCHHHHHHHHHHccCCC
Q 048028 1 MAILGASGAGKTTLMDA--LAGRIEKESLQGAVTLNGEVLESK--LLKIISAYVMQDDLLFPMLTVEETLMFAAEFRLPR 76 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~--l~g~~~~~~~~G~I~i~g~~~~~~--~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~~~ 76 (592)
++|+||||||||||+++ ++|+.+++ +|.|+++|++.... ..++.+||++|+....++ +.+ +...
T Consensus 42 ~~l~G~nGsGKSTL~~~~ll~Gl~~~~--~g~i~v~g~~~~~~~~~~~~~~g~~~q~~~~~~~------l~~---~~~~- 109 (525)
T 1tf7_A 42 TLVSGTSGTGKTLFSIQFLYNGIIEFD--EPGVFVTFEETPQDIIKNARSFGWDLAKLVDEGK------LFI---LDAS- 109 (525)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHHHC--CCEEEEESSSCHHHHHHHHGGGTCCHHHHHHTTS------EEE---EECC-
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHhCC--CCEEEEEEeCCHHHHHHHHHHcCCChHHhhccCc------EEE---EecC-
Confidence 47999999999999999 78987644 59999999874321 223457999997543211 100 0100
Q ss_pred CCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCC-----CCCHHHHHHHH
Q 048028 77 SVTKTKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTS-----GLDSTSAFMVV 151 (592)
Q Consensus 77 ~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPts-----gLD~~~~~~i~ 151 (592)
. . ++..++++.+++.+..+..+ +.|||| +|++++|||||+ +||+..+..+.
T Consensus 110 ~-~-----~~~~~~l~~~~l~~~~~~~~-----~~LS~g-------------~~~~lilDe~t~~~~~~~lD~~~~~~l~ 165 (525)
T 1tf7_A 110 P-D-----PEGQEVVGGFDLSALIERIN-----YAIQKY-------------RARRVSIDSVTSVFQQYDASSVVRRELF 165 (525)
T ss_dssp C-C-----SSCCSCCSSHHHHHHHHHHH-----HHHHHH-------------TCSEEEEECSTTTSTTTCCHHHHHHHHH
T ss_pred c-c-----cchhhhhcccCHHHHHHHHH-----HHHHHc-------------CCCEEEECCHHHHHHhcCCHHHHHHHHH
Confidence 0 0 00111222333333332222 235554 588999999998 56999999999
Q ss_pred HHHHHHHHcCCEEEEEecCChhH--------HHhhhceEEEecCCe
Q 048028 152 NVLQRIAKSGSIVIMSIHQPSYR--------ILSLLDRLIILSHGQ 189 (592)
Q Consensus 152 ~~l~~la~~g~tvi~~~H~~~~~--------i~~~~D~v~ll~~G~ 189 (592)
+++++++++|.|||+++|+++.. +..+||+|++|++|+
T Consensus 166 ~ll~~l~~~g~tvl~itH~~~~~~~~~~~~i~~~laD~vi~L~~~~ 211 (525)
T 1tf7_A 166 RLVARLKQIGATTVMTTERIEEYGPIARYGVEEFVSDNVVILRNVL 211 (525)
T ss_dssp HHHHHHHHHTCEEEEEEECSSSSSCSSTTSCHHHHCSEEEEEEEEC
T ss_pred HHHHHHHHCCCEEEEEecCCCCccccccccceeeeeeEEEEEEEEc
Confidence 99999988899999999999741 345699999999843
No 95
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=99.64 E-value=1e-17 Score=167.16 Aligned_cols=161 Identities=9% Similarity=0.128 Sum_probs=105.3
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCcccccceeEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCH
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLESKLLKIISAYVMQDDLLFPMLTVEETLMFAAEFRLPRSVTK 80 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~ 80 (592)
+||.||||||||||+++|+|++ |.+.++ ..++.++|++|++ +++.+|+.|++.+...... ...+.
T Consensus 28 igI~G~~GsGKSTl~k~L~~~l------G~~~~~-------~~~~~i~~v~~d~-~~~~l~~~~~~~~~~~~~~-~~~~~ 92 (245)
T 2jeo_A 28 IGVSGGTASGKSTVCEKIMELL------GQNEVE-------QRQRKVVILSQDR-FYKVLTAEQKAKALKGQYN-FDHPD 92 (245)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH------TGGGSC-------GGGCSEEEEEGGG-GBCCCCHHHHHHHHTTCCC-TTSGG
T ss_pred EEEECCCCCCHHHHHHHHHHHh------chhccc-------ccCCceEEEeCCc-CccccCHhHhhhhhccCCC-CCCcc
Confidence 5899999999999999999974 333333 2356689999996 7788999999877543221 11111
Q ss_pred HHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc
Q 048028 81 TKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVNVLQRIAKS 160 (592)
Q Consensus 81 ~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~la~~ 160 (592)
....+.+.+.++.+ .+..+..+ ..+|+||+||+.+ ++++.+|+++++|||....|.. +.++ .
T Consensus 93 ~~~~~~~~~~L~~l--~~~~~~~~-----~~ls~g~~~r~~~-~~~~~~~~~lilDg~~~~~~~~--------l~~~--~ 154 (245)
T 2jeo_A 93 AFDNDLMHRTLKNI--VEGKTVEV-----PTYDFVTHSRLPE-TTVVYPADVVLFEGILVFYSQE--------IRDM--F 154 (245)
T ss_dssp GBCHHHHHHHHHHH--HTTCCEEE-----CCEETTTTEECSS-CEEECCCSEEEEECTTTTTSHH--------HHTT--C
T ss_pred cccHHHHHHHHHHH--HCCCCeec-----ccccccccCccCc-eEEecCCCEEEEeCccccccHH--------HHHh--c
Confidence 11233455555543 33344433 4699999999988 5788899999999998888763 2222 3
Q ss_pred CCEEEEEecCChhHHHh-hhceEEEecCCeEeeecChhhHHHHH
Q 048028 161 GSIVIMSIHQPSYRILS-LLDRLIILSHGQSVYNETPSNLAQFF 203 (592)
Q Consensus 161 g~tvi~~~H~~~~~i~~-~~D~v~ll~~G~~v~~g~~~~~~~~f 203 (592)
+.+|++++|+.. ++.+ +++++ ++|+ +.+++.+.+
T Consensus 155 ~~~i~v~th~~~-~~~r~~~r~~---~~G~-----~~e~~~~~~ 189 (245)
T 2jeo_A 155 HLRLFVDTDSDV-RLSRRVLRDV---RRGR-----DLEQILTQY 189 (245)
T ss_dssp SEEEEEECCHHH-HHHHHHHHHT---C--------CHHHHHHHH
T ss_pred CeEEEEECCHHH-HHHHHHHHHH---HcCC-----CHHHHHHHH
Confidence 789999999744 3433 34444 5664 455555433
No 96
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=99.64 E-value=1.5e-17 Score=174.36 Aligned_cols=163 Identities=17% Similarity=0.221 Sum_probs=113.0
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCc----------ccccceeEEEccCCCCCCCCCHHHHHHHHH
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLES----------KLLKIISAYVMQDDLLFPMLTVEETLMFAA 70 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~----------~~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~ 70 (592)
++|+||||||||||+++|+|..+++ .|.|.+.|++... ..+++.+.++.|.+. +..+.+.-..
T Consensus 74 ~gIiG~nGaGKTTLl~~I~g~~~~~--~g~i~~~G~~~~ev~~~i~~~~~~~~~~~v~~~~~~~~-----~~~~r~~~~~ 146 (347)
T 2obl_A 74 IGIFAGSGVGKSTLLGMICNGASAD--IIVLALIGERGREVNEFLALLPQSTLSKCVLVVTTSDR-----PALERMKAAF 146 (347)
T ss_dssp EEEEECTTSSHHHHHHHHHHHSCCS--EEEEEEESCCHHHHHHHHTTSCHHHHTTEEEEEECTTS-----CHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhcCCCCC--EEEEEEecccHHHHHHHHHhhhhhhhhceEEEEECCCC-----CHHHHHHHHH
Confidence 4899999999999999999998754 5999998875211 113345677777542 2222221110
Q ss_pred HccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHH
Q 048028 71 EFRLPRSVTKTKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMV 150 (592)
Q Consensus 71 ~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i 150 (592)
. ...+.+.....+ .+.. +--+.+..+|+|| ||+++| +.+|++ |+|||+....++
T Consensus 147 ~------------~~~~ae~~~~~~-~~vl---~~ld~~~~lS~g~-r~v~la---l~~p~~------t~Gldp~~~~~l 200 (347)
T 2obl_A 147 T------------ATTIAEYFRDQG-KNVL---LMMDSVTRYARAA-RDVGLA---SGEPDV------RGGFPPSVFSSL 200 (347)
T ss_dssp H------------HHHHHHHHHTTT-CEEE---EEEETHHHHHHHH-HHHHHH---TTCCCC------BTTBCHHHHHHH
T ss_pred H------------HHHHHHHHHhcc-ccHH---HHHhhHHHHHHHH-HHHHHH---cCCCCc------ccCCCHHHHHHH
Confidence 0 000111111111 1111 0002345699999 899999 678877 999999999999
Q ss_pred HHHHHHHHH--cCC-----EEEEEecCChhHHHhhhceEEEecCCeEeeecChhhH
Q 048028 151 VNVLQRIAK--SGS-----IVIMSIHQPSYRILSLLDRLIILSHGQSVYNETPSNL 199 (592)
Q Consensus 151 ~~~l~~la~--~g~-----tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~~~~ 199 (592)
.++++++.+ +|. ||++++||.+ ..+||++..|.+|+++.+|++++.
T Consensus 201 ~~ller~~~~~~GsiT~~~tVl~~thdl~---~~i~d~v~~i~dG~Ivl~~~l~~~ 253 (347)
T 2obl_A 201 PKLLERAGPAPKGSITAIYTVLLESDNVN---DPIGDEVRSILDGHIVLTRELAEE 253 (347)
T ss_dssp HHHHTTCEECSSSEEEEEEEEECCSSCCC---CHHHHHHHHHCSEEEEBCHHHHTT
T ss_pred HHHHHHHhCCCCCCeeeEEEEEEeCCCCC---ChhhhheEEeeCcEEEEeCCHHHc
Confidence 999999975 477 8999999987 467999999999999999888765
No 97
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=99.64 E-value=7.1e-17 Score=162.81 Aligned_cols=120 Identities=18% Similarity=0.316 Sum_probs=87.0
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCcccccceeEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCH
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLESKLLKIISAYVMQDDLLFPMLTVEETLMFAAEFRLPRSVTK 80 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~ 80 (592)
++|+||||||||||+++|+|.+++. .+|+|.++|.++... .+...++++|.
T Consensus 28 v~i~Gp~GsGKSTll~~l~g~~~~~-~~G~I~~~g~~i~~~-~~~~~~~v~q~--------------------------- 78 (261)
T 2eyu_A 28 ILVTGPTGSGKSTTIASMIDYINQT-KSYHIITIEDPIEYV-FKHKKSIVNQR--------------------------- 78 (261)
T ss_dssp EEEECSTTCSHHHHHHHHHHHHHHH-CCCEEEEEESSCCSC-CCCSSSEEEEE---------------------------
T ss_pred EEEECCCCccHHHHHHHHHHhCCCC-CCCEEEEcCCcceee-cCCcceeeeHH---------------------------
Confidence 4899999999999999999998642 159999988765311 11111222221
Q ss_pred HHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc
Q 048028 81 TKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVNVLQRIAKS 160 (592)
Q Consensus 81 ~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~la~~ 160 (592)
.+|++. ..+ |++||++|..+|+++++|||| |+.+...++ +. ++.
T Consensus 79 ------------~~gl~~-----------~~l------~~~la~aL~~~p~illlDEp~---D~~~~~~~l---~~-~~~ 122 (261)
T 2eyu_A 79 ------------EVGEDT-----------KSF------ADALRAALREDPDVIFVGEMR---DLETVETAL---RA-AET 122 (261)
T ss_dssp ------------EBTTTB-----------SCH------HHHHHHHHHHCCSEEEESCCC---SHHHHHHHH---HH-HHT
T ss_pred ------------HhCCCH-----------HHH------HHHHHHHHhhCCCEEEeCCCC---CHHHHHHHH---HH-Hcc
Confidence 123221 112 899999999999999999999 988866544 33 456
Q ss_pred CCEEEEEecCChhHHHhhhceEEEecC
Q 048028 161 GSIVIMSIHQPSYRILSLLDRLIILSH 187 (592)
Q Consensus 161 g~tvi~~~H~~~~~i~~~~D~v~ll~~ 187 (592)
|.+|++++|+++ +...+||++.|..
T Consensus 123 g~~vl~t~H~~~--~~~~~dri~~l~~ 147 (261)
T 2eyu_A 123 GHLVFGTLHTNT--AIDTIHRIVDIFP 147 (261)
T ss_dssp TCEEEEEECCSS--HHHHHHHHHHTSC
T ss_pred CCEEEEEeCcch--HHHHHHHHhhhcC
Confidence 999999999986 5788999988864
No 98
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=99.64 E-value=2e-17 Score=194.66 Aligned_cols=144 Identities=17% Similarity=0.196 Sum_probs=99.7
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCcccccceeEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCH
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLESKLLKIISAYVMQDDLLFPMLTVEETLMFAAEFRLPRSVTK 80 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~ 80 (592)
++|+||||||||||||++ |+... ..+..+||||+.. .+||.|++.. +
T Consensus 792 ~~ItGpNgsGKSTlLr~i-Gl~~~------------------~aqiG~~Vpq~~~---~l~v~d~I~~----r------- 838 (1022)
T 2o8b_B 792 VLVTGPNMGGKSTLMRQA-GLLAV------------------MAQMGCYVPAEVC---RLTPIDRVFT----R------- 838 (1022)
T ss_dssp EEEECCTTSSHHHHHHHH-HHHHH------------------HHTTTCCEESSEE---EECCCSBEEE----E-------
T ss_pred EEEECCCCCChHHHHHHH-HHHHH------------------HhheeEEeccCcC---CCCHHHHHHH----H-------
Confidence 479999999999999999 88641 1222249999763 4566555410 1
Q ss_pred HHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHH-HHHHHHHHHHHH
Q 048028 81 TKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSA-FMVVNVLQRIAK 159 (592)
Q Consensus 81 ~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~-~~i~~~l~~la~ 159 (592)
+|+.+..+. ....+|++++ ++++|++++.+|+++|||||++|+|+... ..+.+.|+.+++
T Consensus 839 -------------ig~~d~~~~-----~~stf~~em~-~~a~al~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~ 899 (1022)
T 2o8b_B 839 -------------LGASDRIMS-----GESTFFVELS-ETASILMHATAHSLVLVDELGRGTATFDGTAIANAVVKELAE 899 (1022)
T ss_dssp -------------CC--------------CHHHHHHH-HHHHHHHHCCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHH
T ss_pred -------------cCCHHHHhh-----chhhhHHHHH-HHHHHHHhCCCCcEEEEECCCCCCChHHHHHHHHHHHHHHHh
Confidence 122211111 1124677666 49999999999999999999999999984 557899999987
Q ss_pred c-CCEEEEEecCChhHHHhhhceEEEecCCeEe--eecChhh
Q 048028 160 S-GSIVIMSIHQPSYRILSLLDRLIILSHGQSV--YNETPSN 198 (592)
Q Consensus 160 ~-g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v--~~g~~~~ 198 (592)
+ |.++|++||+++ .+...+|++.++ +|++. +.|++++
T Consensus 900 ~~g~~vl~~TH~~e-l~~~~~d~~~v~-~g~~~~~~~~~~~~ 939 (1022)
T 2o8b_B 900 TIKCRTLFSTHYHS-LVEDYSQNVAVR-LGHMACMVENECED 939 (1022)
T ss_dssp TSCCEEEEECCCHH-HHHHTSSCSSEE-EEEEEEC-------
T ss_pred cCCCEEEEEeCCHH-HHHHhCCcceee-cCeEEEEEecCccc
Confidence 6 999999999987 467789999887 58877 4565543
No 99
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=99.64 E-value=8.1e-18 Score=173.28 Aligned_cols=145 Identities=10% Similarity=0.064 Sum_probs=104.6
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCccc---------ccceeEEEccCCCCCCCCCHHHHHHHHHH
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLESKL---------LKIISAYVMQDDLLFPMLTVEETLMFAAE 71 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~~~---------~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~ 71 (592)
++|+||||||||||++.|+|++++. +|+|.++|.++.+.. .+..++|++|+..+.|.+||+|++.++..
T Consensus 105 i~lvG~nGsGKTTll~~Lagll~~~--~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~~~~~ 182 (304)
T 1rj9_A 105 VLVVGVNGVGKTTTIAKLGRYYQNL--GKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQAMKA 182 (304)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHTT--TCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHHHHhc--CCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHHHh
Confidence 4799999999999999999998864 599999998874311 13457999999999999999999976532
Q ss_pred ccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHH
Q 048028 72 FRLPRSVTKTKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVV 151 (592)
Q Consensus 72 l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~ 151 (592)
-. . -..+++..|+.+..+. -++..++||++|||+++.+|+.++| .||+.+..+++
T Consensus 183 ~~----~--------d~~llDt~G~~~~~~~--------~~~eLs~~r~~iaRal~~~P~~~lL-----vLDa~t~~~~~ 237 (304)
T 1rj9_A 183 RG----Y--------DLLFVDTAGRLHTKHN--------LMEELKKVKRAIAKADPEEPKEVWL-----VLDAVTGQNGL 237 (304)
T ss_dssp HT----C--------SEEEECCCCCCTTCHH--------HHHHHHHHHHHHHHHCTTCCSEEEE-----EEETTBCTHHH
T ss_pred CC----C--------CEEEecCCCCCCchHH--------HHHHHHHHHHHHHHhhcCCCCeEEE-----EEcHHHHHHHH
Confidence 10 0 0012223343332221 2455669999999999999995544 56666666677
Q ss_pred HHHHHHHHc-CCEEEEEecCCh
Q 048028 152 NVLQRIAKS-GSIVIMSIHQPS 172 (592)
Q Consensus 152 ~~l~~la~~-g~tvi~~~H~~~ 172 (592)
+.++++.++ |.|+|++||+..
T Consensus 238 ~~~~~~~~~~~~t~iivTh~d~ 259 (304)
T 1rj9_A 238 EQAKKFHEAVGLTGVIVTKLDG 259 (304)
T ss_dssp HHHHHHHHHHCCSEEEEECTTS
T ss_pred HHHHHHHHHcCCcEEEEECCcc
Confidence 778887764 899999999854
No 100
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=99.64 E-value=3.2e-16 Score=182.46 Aligned_cols=88 Identities=17% Similarity=0.220 Sum_probs=75.3
Q ss_pred CCCCHHHHHHHHHHHHH--hhCCcEEEEeCCCCCCCHHHHHHH-HHHHHHHHH-cCCEEEEEecCChhHHHhhhceEEEe
Q 048028 110 RGVSGGERRRVSIGIHI--IHDPILLFLDEPTSGLDSTSAFMV-VNVLQRIAK-SGSIVIMSIHQPSYRILSLLDRLIIL 185 (592)
Q Consensus 110 ~~LSgGerqRv~ia~~L--~~~p~lllLDEPtsgLD~~~~~~i-~~~l~~la~-~g~tvi~~~H~~~~~i~~~~D~v~ll 185 (592)
+++|+|+++++.+|+++ +.+|+++||||||+|||+.....+ ..+++.+++ .|.++|++||+.+ +.+++|++..+
T Consensus 720 ~~lStf~~e~~~~a~il~~a~~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~e--l~~lad~~~~v 797 (934)
T 3thx_A 720 KGVSTFMAEMLETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFHE--LTALANQIPTV 797 (934)
T ss_dssp ---CHHHHHHHHHHHHHHHCCTTCEEEEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCGG--GGGGGGTCTTE
T ss_pred HhHhhhHHHHHHHHHHHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcHH--HHHHhccccee
Confidence 45899998888888888 899999999999999999998888 677888886 4899999999964 67899999999
Q ss_pred cCCeEeeecChhhH
Q 048028 186 SHGQSVYNETPSNL 199 (592)
Q Consensus 186 ~~G~~v~~g~~~~~ 199 (592)
.+|++...++.+++
T Consensus 798 ~ng~v~~~~~~~~l 811 (934)
T 3thx_A 798 NNLHVTALTTEETL 811 (934)
T ss_dssp EEEEEEEEEETTEE
T ss_pred EeeEEEEEecCCcE
Confidence 99999988877654
No 101
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=99.62 E-value=2.8e-18 Score=164.78 Aligned_cols=153 Identities=13% Similarity=0.120 Sum_probs=102.2
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCc-ccccceeEEEccCCCCCCCCCHHHHHHHHHHccCCCCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLES-KLLKIISAYVMQDDLLFPMLTVEETLMFAAEFRLPRSVT 79 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~-~~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~ 79 (592)
++|+||||||||||+++|+|.++ . +| |.++|..... ...++.+||++|+. ... ++++ +++..
T Consensus 4 i~i~G~nG~GKTTll~~l~g~~~-~--~G-i~~~g~~~~~~~~~~~~ig~~~~~~--~g~---~~~l---~~~~~----- 66 (189)
T 2i3b_A 4 VFLTGPPGVGKTTLIHKASEVLK-S--SG-VPVDGFYTEEVRQGGRRIGFDVVTL--SGT---RGPL---SRVGL----- 66 (189)
T ss_dssp EEEESCCSSCHHHHHHHHHHHHH-H--TT-CCCEEEECCEEETTSSEEEEEEEET--TSC---EEEE---EECCC-----
T ss_pred EEEECCCCChHHHHHHHHHhhcc-c--CC-EEEcCEecchhHhhhceEEEEEEec--ccc---eehh---hcccc-----
Confidence 48999999999999999999976 3 48 9999887643 23567789999975 111 1211 11110
Q ss_pred HHHHHHHHHHHHHHcCCcc-cccccccCCCCCCCCHHHHHHH-HHHH---HHhhCCcEEEEeC--CCCCCCHHHHHHHHH
Q 048028 80 KTKKQERVEALINQLGLRS-AAKTFIGDERHRGVSGGERRRV-SIGI---HIIHDPILLFLDE--PTSGLDSTSAFMVVN 152 (592)
Q Consensus 80 ~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~LSgGerqRv-~ia~---~L~~~p~lllLDE--PtsgLD~~~~~~i~~ 152 (592)
+.++ ..+..+| ++...+|+|||+++ ++++ |+..+|+++++|| |+..+|.... +
T Consensus 67 ---------------~~~~~~~~~~v~-~~~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~----~ 126 (189)
T 2i3b_A 67 ---------------EPPPGKRECRVG-QYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFI----Q 126 (189)
T ss_dssp ---------------CCCSSSCCEESS-SSEECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHH----H
T ss_pred ---------------cCCccccccccc-eEEEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHHH----H
Confidence 1110 0112343 23456999999988 4444 5789999999999 8999998754 4
Q ss_pred HHHHHHHcCCEEEE---E-ecCChhHHHhhhceEEEecCCeEeee
Q 048028 153 VLQRIAKSGSIVIM---S-IHQPSYRILSLLDRLIILSHGQSVYN 193 (592)
Q Consensus 153 ~l~~la~~g~tvi~---~-~H~~~~~i~~~~D~v~ll~~G~~v~~ 193 (592)
.|+++.++..++|+ + +|+.+ ..+.|+|..+.+|+++.-
T Consensus 127 ~l~~~l~~~~~~ilgti~vsh~~~---~~~vd~i~~~~~~~i~~~ 168 (189)
T 2i3b_A 127 AVRQTLSTPGTIILGTIPVPKGKP---LALVEEIRNRKDVKVFNV 168 (189)
T ss_dssp HHHHHHHCSSCCEEEECCCCCSSC---CTTHHHHHTTCCSEEEEC
T ss_pred HHHHHHhCCCcEEEEEeecCCCCc---hHHHHHHeecCCcEEEEe
Confidence 44555444555553 2 38864 357888888888998764
No 102
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.60 E-value=4.5e-18 Score=175.21 Aligned_cols=145 Identities=16% Similarity=0.192 Sum_probs=82.8
Q ss_pred CEEECCCCCcHHHHHHHHhCC-CCCCCceeEEEECCEecCcccccceeEEEccCCCCCCCCCHHHHHHHHHHccCCCCCC
Q 048028 1 MAILGASGAGKTTLMDALAGR-IEKESLQGAVTLNGEVLESKLLKIISAYVMQDDLLFPMLTVEETLMFAAEFRLPRSVT 79 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~-~~~~~~~G~I~i~g~~~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~ 79 (592)
++|+||||+|||||+|.|.|. ..+ .+| |.++|.++......+.+++++|++.....+||.|+..++.... .
T Consensus 21 I~lvG~nG~GKSTLl~~L~g~~~~~--~~g-i~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~-----~ 92 (301)
T 2qnr_A 21 LMVVGESGLGKSTLINSLFLTDLYP--ERV-ISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAIN-----C 92 (301)
T ss_dssp EEEEEETTSSHHHHHHHHHC---------------------------CEEEEC---CCEEEEEEEEC-------------
T ss_pred EEEECCCCCCHHHHHHHHhCCCccC--CCC-cccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcC-----c
Confidence 379999999999999999997 543 358 8888877643222345789999988888899999987754321 0
Q ss_pred HHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCC-CCCHHHHHHHHHHHHHHH
Q 048028 80 KTKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTS-GLDSTSAFMVVNVLQRIA 158 (592)
Q Consensus 80 ~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPts-gLD~~~~~~i~~~l~~la 158 (592)
.+..+..++.+. +..+.. .+++|||||||+.+|++++ ++++||||+ |||+... +.++++.
T Consensus 93 ~e~~~~l~~~l~------~~~~~~-----~~~~sgg~rqrv~~ara~~----ll~ldePt~~~Ld~~~~----~~l~~l~ 153 (301)
T 2qnr_A 93 RDCFKTIISYID------EQFERY-----LHDESGLNRRHIIDNRVHC----CFYFISPFGHGLKPLDV----AFMKAIH 153 (301)
T ss_dssp ---CTTHHHHHH------HHHHHH-----HHHHTSSCCTTCCCCCCCE----EEEEECSSSSSCCHHHH----HHHHHHT
T ss_pred HHHHHHHHHHHH------HHHHHH-----HHHhCHHhhhhhhhhhhhh----eeeeecCcccCCCHHHH----HHHHHHH
Confidence 000011122221 222233 3469999999999888875 999999998 5999873 5666665
Q ss_pred Hc-CCEEEEEecCCh
Q 048028 159 KS-GSIVIMSIHQPS 172 (592)
Q Consensus 159 ~~-g~tvi~~~H~~~ 172 (592)
++ +.++|++.||..
T Consensus 154 ~~~~iilV~~K~Dl~ 168 (301)
T 2qnr_A 154 NKVNIVPVIAKADTL 168 (301)
T ss_dssp TTSCEEEEECCGGGS
T ss_pred hcCCEEEEEEeCCCC
Confidence 54 678889999974
No 103
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=99.58 E-value=1.1e-16 Score=168.14 Aligned_cols=151 Identities=20% Similarity=0.141 Sum_probs=92.9
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCce----eE-EEECCEecCcccccceeEEEccCCCCCCCCCHHHHHHHHHHccCC
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQ----GA-VTLNGEVLESKLLKIISAYVMQDDLLFPMLTVEETLMFAAEFRLP 75 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~----G~-I~i~g~~~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~~ 75 (592)
++|+||||||||||++.+++.....+.+ |. |++++++.. .++.+++++|+..+++. ++.||+.+..
T Consensus 134 ~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~---~~~~i~~i~q~~~~~~~-~v~~ni~~~~----- 204 (349)
T 1pzn_A 134 TEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF---RPERIREIAQNRGLDPD-EVLKHIYVAR----- 204 (349)
T ss_dssp EEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCC---CHHHHHHHHHTTTCCHH-HHGGGEEEEE-----
T ss_pred EEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCC---CHHHHHHHHHHcCCCHH-HHhhCEEEEe-----
Confidence 4799999999999999999986322222 67 888886531 12345666776554443 4444443210
Q ss_pred CCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHh-------hCCcEEEEeCCCCCCCHHH--
Q 048028 76 RSVTKTKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHII-------HDPILLFLDEPTSGLDSTS-- 146 (592)
Q Consensus 76 ~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~-------~~p~lllLDEPtsgLD~~~-- 146 (592)
.. -|.+++|++.++++++ .+|+++++||||+++|+..
T Consensus 205 -~~---------------------------------~~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~ld~~~~~ 250 (349)
T 1pzn_A 205 -AF---------------------------------NSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIG 250 (349)
T ss_dssp -CC---------------------------------SHHHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSSTTHHHHCCS
T ss_pred -cC---------------------------------ChHHHHHHHHHHHHHHHHhccccCCCCEEEEeCchHhhhhhhcc
Confidence 00 1345566666666666 6899999999999999852
Q ss_pred ----------HHHHHHHHHHHHHc-CCEEEEEecCChhHHHhhhceEEEecCCeEeeecC
Q 048028 147 ----------AFMVVNVLQRIAKS-GSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNET 195 (592)
Q Consensus 147 ----------~~~i~~~l~~la~~-g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~ 195 (592)
..++++.|++++++ |.|||+++|... +....++.......|+++.++.
T Consensus 251 ~~~~~~r~~~~~~~l~~L~~la~~~~~tvii~~h~~~-~~~~~~~~~~~~~~G~~l~~~~ 309 (349)
T 1pzn_A 251 RGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQA-RPDAFFGDPTRPIGGHILAHSA 309 (349)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECC----------------CCCCCTTC
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHcCcEEEEEccccc-ccccccCCccccCCcceEeecC
Confidence 45677777887764 899999999875 4444555666667777766554
No 104
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=99.58 E-value=2e-16 Score=181.01 Aligned_cols=120 Identities=19% Similarity=0.200 Sum_probs=87.9
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCcccccceeEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCH
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLESKLLKIISAYVMQDDLLFPMLTVEETLMFAAEFRLPRSVTK 80 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~ 80 (592)
++|+||||||||||||+|+|..... ..|.+. .. .+..+++++| +++.+++.|++.
T Consensus 579 ~~I~GpNGsGKSTlLr~iagl~~~~-~~G~~v------pa--~~~~i~~v~~---i~~~~~~~d~l~------------- 633 (765)
T 1ewq_A 579 VLITGPNMAGKSTFLRQTALIALLA-QVGSFV------PA--EEAHLPLFDG---IYTRIGASDDLA------------- 633 (765)
T ss_dssp EEEESCSSSSHHHHHHHHHHHHHHH-TTTCCB------SS--SEEEECCCSE---EEEECCC------------------
T ss_pred EEEECCCCCChHHHHHHHHhhhhhc-ccCcee------eh--hccceeeHHH---hhccCCHHHHHH-------------
Confidence 4799999999999999999985311 125431 11 1234677766 566667666542
Q ss_pred HHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHH--hhCCcEEEEeCC---CCCCCHHHH-HHHHHHH
Q 048028 81 TKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHI--IHDPILLFLDEP---TSGLDSTSA-FMVVNVL 154 (592)
Q Consensus 81 ~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L--~~~p~lllLDEP---tsgLD~~~~-~~i~~~l 154 (592)
.++|+|+++++.+++++ +.+|+++||||| |++||..+. ..+++.|
T Consensus 634 -----------------------------~g~S~~~~e~~~la~il~~a~~p~LlLLDEpgrGTs~lD~~~~~~~i~~~L 684 (765)
T 1ewq_A 634 -----------------------------GGKSTFMVEMEEVALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEAL 684 (765)
T ss_dssp ------------------------------CCSHHHHHHHHHHHHHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHH
T ss_pred -----------------------------hcccHHHHHHHHHHHHHHhccCCCEEEEECCCCCCCCcCHHHHHHHHHHHH
Confidence 13799999999999999 999999999999 999998875 5777777
Q ss_pred HHHHHcCCEEEEEecCChhHHHhhh
Q 048028 155 QRIAKSGSIVIMSIHQPSYRILSLL 179 (592)
Q Consensus 155 ~~la~~g~tvi~~~H~~~~~i~~~~ 179 (592)
++ .|.++|++||+++ ..+++
T Consensus 685 ~~---~g~~vl~~TH~~~--l~~~~ 704 (765)
T 1ewq_A 685 HE---RRAYTLFATHYFE--LTALG 704 (765)
T ss_dssp HH---HTCEEEEECCCHH--HHTCC
T ss_pred Hh---CCCEEEEEeCCHH--HHHhh
Confidence 66 5899999999964 44554
No 105
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=99.57 E-value=7.4e-16 Score=161.95 Aligned_cols=121 Identities=18% Similarity=0.285 Sum_probs=84.4
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCcccccceeEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCH
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLESKLLKIISAYVMQDDLLFPMLTVEETLMFAAEFRLPRSVTK 80 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~ 80 (592)
++|+|||||||||||++|+|.+++. .+|.|...+.++.. ..+...+++.|.......+|.
T Consensus 126 i~I~GptGSGKTTlL~~l~g~~~~~-~~~~i~t~ed~~e~-~~~~~~~~v~q~~~~~~~~~~------------------ 185 (356)
T 3jvv_A 126 VLVTGPTGSGKSTTLAAMLDYLNNT-KYHHILTIEDPIEF-VHESKKCLVNQREVHRDTLGF------------------ 185 (356)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHHHH-CCCEEEEEESSCCS-CCCCSSSEEEEEEBTTTBSCH------------------
T ss_pred EEEECCCCCCHHHHHHHHHhcccCC-CCcEEEEccCcHHh-hhhccccceeeeeeccccCCH------------------
Confidence 4799999999999999999998642 13666544433321 122223455554332222221
Q ss_pred HHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc
Q 048028 81 TKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVNVLQRIAKS 160 (592)
Q Consensus 81 ~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~la~~ 160 (592)
.+ +||++|..+|++|++|||| |..+ .+.+.++++.
T Consensus 186 ----------------------------------~~----~La~aL~~~PdvillDEp~---d~e~----~~~~~~~~~~ 220 (356)
T 3jvv_A 186 ----------------------------------SE----ALRSALREDPDIILVGEMR---DLET----IRLALTAAET 220 (356)
T ss_dssp ----------------------------------HH----HHHHHTTSCCSEEEESCCC---SHHH----HHHHHHHHHT
T ss_pred ----------------------------------HH----HHHHHhhhCcCEEecCCCC---CHHH----HHHHHHHHhc
Confidence 11 8999999999999999999 6554 4444555677
Q ss_pred CCEEEEEecCChhHHHhhhceEEEecCC
Q 048028 161 GSIVIMSIHQPSYRILSLLDRLIILSHG 188 (592)
Q Consensus 161 g~tvi~~~H~~~~~i~~~~D~v~ll~~G 188 (592)
|.+|++|+|+++. + +.+||++.|..|
T Consensus 221 G~~vl~t~H~~~~-~-~~~dRli~l~~~ 246 (356)
T 3jvv_A 221 GHLVFGTLHTTSA-A-KTIDRVVDVFPA 246 (356)
T ss_dssp TCEEEEEESCSSH-H-HHHHHHHHTSCH
T ss_pred CCEEEEEEccChH-H-HHHHHHhhhcCc
Confidence 9999999999973 4 889999998654
No 106
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=99.57 E-value=1.3e-14 Score=137.06 Aligned_cols=89 Identities=20% Similarity=0.273 Sum_probs=72.5
Q ss_pred CCCCCHHHHHHHHHHHHHhh----CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCChhHHHhhhceEEE
Q 048028 109 HRGVSGGERRRVSIGIHIIH----DPILLFLDEPTSGLDSTSAFMVVNVLQRIAKSGSIVIMSIHQPSYRILSLLDRLII 184 (592)
Q Consensus 109 ~~~LSgGerqRv~ia~~L~~----~p~lllLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~H~~~~~i~~~~D~v~l 184 (592)
+..||||||||++||++|+. +|++++|||||+|||+.+...+.+.|+++++ +.++|+++|++. +.+.+|+++.
T Consensus 62 ~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~-~~~~ivith~~~--~~~~ad~i~~ 138 (173)
T 3kta_B 62 IEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSK-ESQFIVITLRDV--MMANADKIIG 138 (173)
T ss_dssp GGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTT-TSEEEEECSCHH--HHTTCSEEEE
T ss_pred cccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhcc-CCEEEEEEecHH--HHHhCCEEEE
Confidence 46799999999999999974 4699999999999999999999999999875 468999999964 6789999986
Q ss_pred ec--CCeE-eeecChhhHH
Q 048028 185 LS--HGQS-VYNETPSNLA 200 (592)
Q Consensus 185 l~--~G~~-v~~g~~~~~~ 200 (592)
+. +|.. +...+.++..
T Consensus 139 v~~~~g~s~~~~~~~~~~~ 157 (173)
T 3kta_B 139 VSMRDGVSKVVSLSLEKAM 157 (173)
T ss_dssp EEEETTEEEEEECCHHHHH
T ss_pred EEecCCEEEEEEEEcHHHH
Confidence 64 5642 3344444443
No 107
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=99.56 E-value=3.3e-15 Score=151.79 Aligned_cols=144 Identities=17% Similarity=0.160 Sum_probs=98.3
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCcccccceeEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCH
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLESKLLKIISAYVMQDDLLFPMLTVEETLMFAAEFRLPRSVTK 80 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~ 80 (592)
++|+||||||||||++.+++... +|++ +.|.+... ...+.|+..++.. ..+.+.+. .+. ....
T Consensus 33 ~~i~G~~GsGKTtl~~~l~~~~~----~g~~-~~g~~~~~---~~~v~~~~~e~~~---~~~~~r~~---~~g--~~~~- 95 (279)
T 1nlf_A 33 GALVSPGGAGKSMLALQLAAQIA----GGPD-LLEVGELP---TGPVIYLPAEDPP---TAIHHRLH---ALG--AHLS- 95 (279)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHH----TCCC-TTCCCCCC---CCCEEEEESSSCH---HHHHHHHH---HHH--TTSC-
T ss_pred EEEEcCCCCCHHHHHHHHHHHHh----cCCC-cCCCccCC---CccEEEEECCCCH---HHHHHHHH---HHH--hhcC-
Confidence 47999999999999999998643 2555 33543321 2346787766532 01212221 111 1112
Q ss_pred HHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCC--CCCHHHH---HHHHHHHH
Q 048028 81 TKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTS--GLDSTSA---FMVVNVLQ 155 (592)
Q Consensus 81 ~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPts--gLD~~~~---~~i~~~l~ 155 (592)
....+++++.+++.+..+. .+..+|+||++++ ++++.+|+++++||||+ ++|.... .++++.|+
T Consensus 96 ---~~~~~~~~~~l~l~~~~~~-----~~~~ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~~~~~~~~~~~~L~ 164 (279)
T 1nlf_A 96 ---AEERQAVADGLLIQPLIGS-----LPNIMAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRME 164 (279)
T ss_dssp ---HHHHHHHHHHEEECCCTTS-----CCCTTSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHH
T ss_pred ---hhhhhhccCceEEeecCCC-----CcccCCHHHHHHH---HHhcCCCCEEEECCHHHhcCCCcCchHHHHHHHHHHH
Confidence 1335677888888766543 3456999998876 68889999999999999 9998544 88889999
Q ss_pred HHHH-cCCEEEEEecCCh
Q 048028 156 RIAK-SGSIVIMSIHQPS 172 (592)
Q Consensus 156 ~la~-~g~tvi~~~H~~~ 172 (592)
++++ .|.|||+++|+..
T Consensus 165 ~l~~~~g~tvi~i~H~~~ 182 (279)
T 1nlf_A 165 AIAADTGCSIVFLHHASK 182 (279)
T ss_dssp HHHHHHCCEEEEEEEC--
T ss_pred HHHHHcCCEEEEEecCCC
Confidence 9975 5999999999975
No 108
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=99.55 E-value=5.1e-15 Score=163.51 Aligned_cols=78 Identities=23% Similarity=0.326 Sum_probs=71.6
Q ss_pred CCCCC-CHHHHHHHHHHHHHhhCC--cEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCChhHHHhhhceEEE
Q 048028 108 RHRGV-SGGERRRVSIGIHIIHDP--ILLFLDEPTSGLDSTSAFMVVNVLQRIAKSGSIVIMSIHQPSYRILSLLDRLII 184 (592)
Q Consensus 108 ~~~~L-SgGerqRv~ia~~L~~~p--~lllLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~H~~~~~i~~~~D~v~l 184 (592)
.+..| ||||||||+||++|+.+| ++|+|||||+|||+.++..+.+.|+++++ |.|||++||+|. +...||++++
T Consensus 393 ~~~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~-~~~vi~itH~~~--~~~~~d~~~~ 469 (517)
T 4ad8_A 393 PLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLAD-TRQVLVVTHLAQ--IAARAHHHYK 469 (517)
T ss_dssp BSSSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHH-HSEEEEECCCHH--HHHHSSEEEE
T ss_pred cHHhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhC-CCEEEEEecCHH--HHHhCCEEEE
Confidence 35667 999999999999999999 99999999999999999999999999987 899999999986 4567999999
Q ss_pred ecCC
Q 048028 185 LSHG 188 (592)
Q Consensus 185 l~~G 188 (592)
|++|
T Consensus 470 ~~~~ 473 (517)
T 4ad8_A 470 VEKQ 473 (517)
T ss_dssp EECC
T ss_pred Eecc
Confidence 9654
No 109
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=99.54 E-value=5.7e-15 Score=171.50 Aligned_cols=79 Identities=14% Similarity=0.149 Sum_probs=65.4
Q ss_pred CCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHH-HHHHHHHH-cCCEEEEEecCChhHHHhhhceEEE-ec
Q 048028 110 RGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVV-NVLQRIAK-SGSIVIMSIHQPSYRILSLLDRLII-LS 186 (592)
Q Consensus 110 ~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~-~~l~~la~-~g~tvi~~~H~~~~~i~~~~D~v~l-l~ 186 (592)
..+|+|++|++.|+++ +.+|+++||||||+|||+.....+. .+++.+++ .|.++|++||+++ +.+++|+.-- +.
T Consensus 734 stfs~em~~~~~il~~-a~~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~~~~g~tvl~vTH~~e--l~~l~~~~~~~v~ 810 (918)
T 3thx_B 734 STFMEELTDTAEIIRK-ATSQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHYPP--VCELEKNYSHQVG 810 (918)
T ss_dssp CCHHHHHHHHHHHHHH-CCTTCEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCCEEEEECSCGG--GGGHHHHTTTTEE
T ss_pred HHhhHHHHHHHHHHHh-ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEeCcHH--HHHHHhhcccceE
Confidence 3589999999999998 8999999999999999999999987 78888876 5999999999975 5677776532 34
Q ss_pred CCeEe
Q 048028 187 HGQSV 191 (592)
Q Consensus 187 ~G~~v 191 (592)
++++.
T Consensus 811 n~~~~ 815 (918)
T 3thx_B 811 NYHMG 815 (918)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 44443
No 110
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=99.54 E-value=5.5e-18 Score=161.88 Aligned_cols=167 Identities=13% Similarity=0.128 Sum_probs=110.1
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCcccccceeEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCH
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLESKLLKIISAYVMQDDLLFPMLTVEETLMFAAEFRLPRSVTK 80 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~ 80 (592)
++|+||||||||||+++|++. .+|.+.++|.++... ...++++|.....+.+|++|++.+.+....
T Consensus 5 i~l~G~~GaGKSTl~~~L~~~-----~~g~~~i~~d~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~------ 70 (189)
T 2bdt_A 5 YIITGPAGVGKSTTCKRLAAQ-----LDNSAYIEGDIINHM---VVGGYRPPWESDELLALTWKNITDLTVNFL------ 70 (189)
T ss_dssp EEEECSTTSSHHHHHHHHHHH-----SSSEEEEEHHHHHTT---CCTTCCCGGGCHHHHHHHHHHHHHHHHHHH------
T ss_pred EEEECCCCCcHHHHHHHHhcc-----cCCeEEEcccchhhh---hccccccCccchhHHHHHHHHHHHHHHHHH------
Confidence 479999999999999999973 248899988765322 124677776655556688888876543210
Q ss_pred HHHHHHHHHHHHHcCCcccccccccC---CCCCCC--CHHHHHHHHHHH------HHhhCCcEEEEeCCCCCCCHHHHHH
Q 048028 81 TKKQERVEALINQLGLRSAAKTFIGD---ERHRGV--SGGERRRVSIGI------HIIHDPILLFLDEPTSGLDSTSAFM 149 (592)
Q Consensus 81 ~~~~~~v~~~l~~lgL~~~~~~~vg~---~~~~~L--SgGerqRv~ia~------~L~~~p~lllLDEPtsgLD~~~~~~ 149 (592)
+ -+.....+...+. +..+.+ |+|++|++.++. +++.+|+...+|| +||+.....
T Consensus 71 -----------~-~~~~~ild~~~~~~~~~~~~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~---~ld~~~~~~ 135 (189)
T 2bdt_A 71 -----------L-AQNDVVLDYIAFPDEAEALAQTVQAKVDDVEIRFIILWTNREELLRRDALRKKDE---QMGERCLEL 135 (189)
T ss_dssp -----------H-TTCEEEEESCCCHHHHHHHHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC-------CGGGGHH
T ss_pred -----------h-cCCcEEEeeccCHHHHHHHHHHHHhcccCCCeEEEEEeCCHHHHHHHHHhccccc---cCCHHHHHH
Confidence 0 0100011110000 001224 888888888888 8999999888884 899988888
Q ss_pred HHHHHHHHHHcCCEEEEEecC-ChhHHHhhhceEEEecCCeEeeecChhhHH
Q 048028 150 VVNVLQRIAKSGSIVIMSIHQ-PSYRILSLLDRLIILSHGQSVYNETPSNLA 200 (592)
Q Consensus 150 i~~~l~~la~~g~tvi~~~H~-~~~~i~~~~D~v~ll~~G~~v~~g~~~~~~ 200 (592)
.+.++.+.+.+.++|.++|+ ++ ++.+.+|+|+ ++|+++..|+++-+.
T Consensus 136 -~~~~~~~~~~~~~ii~tsh~~~~-~~e~~~~~i~--~~g~~~~~~~~~~~~ 183 (189)
T 2bdt_A 136 -VEEFESKGIDERYFYNTSHLQPT-NLNDIVKNLK--TNPRFIFCMAGDPLE 183 (189)
T ss_dssp -HHHHHHTTCCTTSEEECSSSCGG-GHHHHHHHHH--HCGGGSCC-------
T ss_pred -HHHHhhcCCCccEEEeCCCCChh-hHHHHHHHHh--hCCcEEEeecCCchh
Confidence 88888886667899999998 86 5889999999 999999999887553
No 111
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=99.54 E-value=1.4e-16 Score=156.42 Aligned_cols=141 Identities=18% Similarity=0.187 Sum_probs=98.0
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCcccccceeEEEccCCCCCCCCCH----HHHHHHHHHccCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLESKLLKIISAYVMQDDLLFPMLTV----EETLMFAAEFRLPR 76 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~~~~~~~~~yv~Q~~~l~~~lTV----~E~l~f~~~l~~~~ 76 (592)
++|+||||||||||+|+|+|+.++...+|.|.+.+++.... .++.++|++|++..|+.+++ .|++.+....
T Consensus 19 i~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~~-e~~gi~y~fq~~~~f~~~~~~~~f~E~~~~~~~~---- 93 (219)
T 1s96_A 19 YIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPG-EVHGEHYFFVNHDEFKEMISRDAFLEHAEVFGNY---- 93 (219)
T ss_dssp EEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCTT-CCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEE----
T ss_pred EEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCcc-cccCceEEECCHHHHHHHHhcCHHHHHHHHHhcc----
Confidence 47999999999999999999986434679999988765432 34557899998766655544 2332211100
Q ss_pred CCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHH
Q 048028 77 SVTKTKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVNVLQR 156 (592)
Q Consensus 77 ~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~ 156 (592)
.+.| +++ +.+++..++++||| ||+.++.++.+.+.
T Consensus 94 ---------------------------------yg~~---~~~---v~~~l~~G~illLD-----LD~~~~~~i~~~l~- 128 (219)
T 1s96_A 94 ---------------------------------YGTS---REA---IEQVLATGVDVFLD-----IDWQGAQQIRQKMP- 128 (219)
T ss_dssp ---------------------------------EEEE---HHH---HHHHHTTTCEEEEE-----CCHHHHHHHHHHCT-
T ss_pred ---------------------------------CCCC---HHH---HHHHHhcCCeEEEE-----ECHHHHHHHHHHcc-
Confidence 0111 111 33455567999999 99999999998876
Q ss_pred HHHcCCEEEEEecCChhHHHhhhceEEEecCCeEeeecChhhHHHHHH
Q 048028 157 IAKSGSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNETPSNLAQFFA 204 (592)
Q Consensus 157 la~~g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~~~~~~~f~ 204 (592)
++.+|++++|+++ ++.+ |+ +.+| .++++++.+.+.
T Consensus 129 ---~~~tI~i~th~~~-~l~~---Rl--~~rG----~~~~e~i~~rl~ 163 (219)
T 1s96_A 129 ---HARSIFILPPSKI-ELDR---RL--RGRG----QDSEEVIAKRMA 163 (219)
T ss_dssp ---TCEEEEEECSSHH-HHHH---HH--HTTS----CSCHHHHHHHHH
T ss_pred ---CCEEEEEECCCHH-HHHH---HH--HHcC----CCCHHHHHHHHH
Confidence 5889999999986 3443 43 6777 577887766554
No 112
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=99.53 E-value=7.8e-16 Score=150.69 Aligned_cols=78 Identities=12% Similarity=0.065 Sum_probs=65.6
Q ss_pred CCCHHHHHHHHHHHHHhhCCc--EEEEeCCCCCC--CHHHHHHHHHHHHHHHHc-CCEEEEEecCCh-------hHHHhh
Q 048028 111 GVSGGERRRVSIGIHIIHDPI--LLFLDEPTSGL--DSTSAFMVVNVLQRIAKS-GSIVIMSIHQPS-------YRILSL 178 (592)
Q Consensus 111 ~LSgGerqRv~ia~~L~~~p~--lllLDEPtsgL--D~~~~~~i~~~l~~la~~-g~tvi~~~H~~~-------~~i~~~ 178 (592)
..|.+|.++...+.....+|+ ++++||||+++ |+....++++.|++++++ |.|||+++|+.. ..+.++
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~ 182 (235)
T 2w0m_A 103 NLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYAITTSQAFGFGVEHV 182 (235)
T ss_dssp SCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC-----------CHHHH
T ss_pred CCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccCcccccccccchhee
Confidence 359999998888888888999 99999999888 999999999999999764 899999999983 237889
Q ss_pred hceEEEecCC
Q 048028 179 LDRLIILSHG 188 (592)
Q Consensus 179 ~D~v~ll~~G 188 (592)
+|++++|++.
T Consensus 183 ~d~vi~l~~~ 192 (235)
T 2w0m_A 183 ADGIIRFRRM 192 (235)
T ss_dssp CSEEEEEEEE
T ss_pred eeEEEEEEEE
Confidence 9999999864
No 113
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=99.51 E-value=2.6e-15 Score=172.78 Aligned_cols=141 Identities=14% Similarity=0.133 Sum_probs=95.1
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCcccccceeEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCH
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLESKLLKIISAYVMQDDLLFPMLTVEETLMFAAEFRLPRSVTK 80 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~ 80 (592)
++|+||||||||||||+|+|...... . |..+... +..++++.| +++.+++.|++...
T Consensus 610 ~~ItGpNGsGKSTlLr~iagl~~~~q-~------G~~vpa~--~~~i~~~~~---i~~~~~~~d~l~~~----------- 666 (800)
T 1wb9_A 610 LIITGPNMGGKSTYMRQTALIALMAY-I------GSYVPAQ--KVEIGPIDR---IFTRVGAADDLASG----------- 666 (800)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHHHT-T------TCCBSSS--EEEECCCCE---EEEEEC-------------------
T ss_pred EEEECCCCCChHHHHHHHHHHHHHHh-c------Ccccchh--cccceeHHH---HHhhCCHHHHHHhh-----------
Confidence 47999999999999999999743111 1 2222111 123455554 56666666665321
Q ss_pred HHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHH-HHHHHHHHH
Q 048028 81 TKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMV-VNVLQRIAK 159 (592)
Q Consensus 81 ~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i-~~~l~~la~ 159 (592)
+ ..+|++++ +++.+...+.+|+++|||||++|+|+.....+ ...++.+++
T Consensus 667 ---------------~-------------stf~~e~~-~~~~il~~a~~psLlLLDEp~~Gtd~~d~~~i~~~ll~~l~~ 717 (800)
T 1wb9_A 667 ---------------R-------------STFMVEMT-ETANILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLAN 717 (800)
T ss_dssp -------------------------------CHHHHH-HHHHHHHHCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHH
T ss_pred ---------------h-------------hhhhHHHH-HHHHHHHhccCCCEEEEECCCCCCChhHHHHHHHHHHHHHHh
Confidence 0 12566655 45555567899999999999999999887775 788999987
Q ss_pred -cCCEEEEEecCChhHHHhhhceEEEecCCeEeeecC
Q 048028 160 -SGSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNET 195 (592)
Q Consensus 160 -~g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~ 195 (592)
.|.++|++||+++ +..++|++..+.+|++.+...
T Consensus 718 ~~g~~vl~~TH~~e--l~~l~d~~~~v~n~~~~~~~~ 752 (800)
T 1wb9_A 718 KIKALTLFATHYFE--LTQLPEKMEGVANVHLDALEH 752 (800)
T ss_dssp TTCCEEEEECSCGG--GGGHHHHSTTEEEEEEEEEEE
T ss_pred ccCCeEEEEeCCHH--HHHHhhhhhceEEEEEEEEEc
Confidence 4999999999985 467899988888888766543
No 114
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=99.44 E-value=1.2e-17 Score=173.34 Aligned_cols=161 Identities=16% Similarity=0.091 Sum_probs=102.8
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCC------CCceeEEEECCEecCcc------------------cccceeEEE---ccC
Q 048028 1 MAILGASGAGKTTLMDALAGRIEK------ESLQGAVTLNGEVLESK------------------LLKIISAYV---MQD 53 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~------~~~~G~I~i~g~~~~~~------------------~~~~~~~yv---~Q~ 53 (592)
++|+|+||||||||||.|.|..+. .+..|+|.++|.++... .+++.++++ +|+
T Consensus 7 ~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~l~~~~~~~~el~~gCicc~~~~~~~~~l~~l~~~~q~ 86 (318)
T 1nij_A 7 TLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLDNLDK 86 (318)
T ss_dssp EEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHHHHHHHHHHHHHH
T ss_pred EEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHHHhCCCCCEEEECCCceEEcccHHHHHHHHHHHhHHhc
Confidence 479999999999999999998621 13469999999886432 122335666 577
Q ss_pred CCCCCCCCHHHHHHHHH--Hc-cCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCC
Q 048028 54 DLLFPMLTVEETLMFAA--EF-RLPRSVTKTKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDP 130 (592)
Q Consensus 54 ~~l~~~lTV~E~l~f~~--~l-~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p 130 (592)
..+++..+|.||..++. .+ +.-...+......+++.++..+++.+..+... ++|+|||||+..++.++++|
T Consensus 87 ~~~~~~~~v~E~~~l~~p~~~~~~~~~~~~~~~~~~l~~~l~~vd~~~~~~~~~------~ls~g~~Q~~~ad~ill~k~ 160 (318)
T 1nij_A 87 GNIQFDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMN------QFTIAQSQVGYADRILLTKT 160 (318)
T ss_dssp TSCCCSEEEEEEETTCCHHHHHHHHHHSHHHHHHEEEEEEEEEEETTTHHHHHH------HCHHHHHHHHTCSEEEEECT
T ss_pred CCCCCCEEEEeCCCCCCHHHHHHHHhcCccccCeEEECCEEEEEEHHHHHHHHh------hchHHHHHHHhCCEEEEECc
Confidence 66666778887765421 00 00000000000111222333344444443332 48999999998888888999
Q ss_pred cEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCChhHHHhhhc
Q 048028 131 ILLFLDEPTSGLDSTSAFMVVNVLQRIAKSGSIVIMSIHQPSYRILSLLD 180 (592)
Q Consensus 131 ~lllLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~H~~~~~i~~~~D 180 (592)
+++ ||| .++.+.++++. .+.+|++++|++. ++..++|
T Consensus 161 dl~--de~---------~~l~~~l~~l~-~~~~ii~~sh~~~-~~~~l~~ 197 (318)
T 1nij_A 161 DVA--GEA---------EKLHERLARIN-ARAPVYTVTHGDI-DLGLLFN 197 (318)
T ss_dssp TTC--SCT---------HHHHHHHHHHC-SSSCEEECCSSCC-CGGGGSC
T ss_pred ccC--CHH---------HHHHHHHHHhC-CCCeEEEecccCC-CHHHHhC
Confidence 887 998 67888888875 5789999999875 3444444
No 115
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.44 E-value=2.6e-15 Score=144.90 Aligned_cols=74 Identities=9% Similarity=-0.056 Sum_probs=57.2
Q ss_pred HHHHHHHHHcCCcccc-cccccCCCCCCCCHHHHHH-HHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCC
Q 048028 85 ERVEALINQLGLRSAA-KTFIGDERHRGVSGGERRR-VSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVNVLQRIAKSGS 162 (592)
Q Consensus 85 ~~v~~~l~~lgL~~~~-~~~vg~~~~~~LSgGerqR-v~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~la~~g~ 162 (592)
+.+.++++..++.... .+++ ..+|+||||| +..+++++.+|+++++|||||++|.....++++.|.++.++|.
T Consensus 127 ~~~~~~~~~~~~~~~~v~nK~-----D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~~~~ 201 (210)
T 1pui_A 127 QQMIEWAVDSNIAVLVLLTKA-----DKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWFSEMQ 201 (210)
T ss_dssp HHHHHHHHHTTCCEEEEEECG-----GGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHcCCCeEEEEecc-----cCCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHHhhcc
Confidence 3455667777765431 3333 3599999999 8999999999999999999999999999999999999876654
Q ss_pred E
Q 048028 163 I 163 (592)
Q Consensus 163 t 163 (592)
+
T Consensus 202 ~ 202 (210)
T 1pui_A 202 P 202 (210)
T ss_dssp -
T ss_pred c
Confidence 3
No 116
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=99.44 E-value=1.5e-13 Score=133.40 Aligned_cols=77 Identities=17% Similarity=0.047 Sum_probs=60.9
Q ss_pred CCHHH--HHHHHHHHHHhhC-CcEEEEeCCCCCCCHHH--------HHHHHHHHHHHHHc-CCEEEEEecCChh------
Q 048028 112 VSGGE--RRRVSIGIHIIHD-PILLFLDEPTSGLDSTS--------AFMVVNVLQRIAKS-GSIVIMSIHQPSY------ 173 (592)
Q Consensus 112 LSgGe--rqRv~ia~~L~~~-p~lllLDEPtsgLD~~~--------~~~i~~~l~~la~~-g~tvi~~~H~~~~------ 173 (592)
.|+++ ++++..+++++.+ |+++++||||+++|+.. ..++++.|++++++ |.+||+++|....
T Consensus 85 ~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~vi~~~h~~~~~~~~~~ 164 (220)
T 2cvh_A 85 PSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHYRAEENRSGLIAELSRQLQVLLWIARKHNIPVIVINQVHFDSRTEMT 164 (220)
T ss_dssp CTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCTTGGGGSSTTHHHHHHHHHHHHHHHHHHTCCEEEEECSSSSCTTSSC
T ss_pred cCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHhhhcCchHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeEEEcCCCCcc
Confidence 44443 5788888899986 99999999999999743 35566778888765 8999999998651
Q ss_pred ------HHHhhhceEEEecCC
Q 048028 174 ------RILSLLDRLIILSHG 188 (592)
Q Consensus 174 ------~i~~~~D~v~ll~~G 188 (592)
.+...+|++++|++.
T Consensus 165 ~p~~~~~~~~~~d~vi~l~~~ 185 (220)
T 2cvh_A 165 KPVAEQTLGYRCKDILRLDKL 185 (220)
T ss_dssp CSCCCHHHHHTSSEEEEEEEC
T ss_pred ccCCCcceeecCcEEEEEEEe
Confidence 467899999999864
No 117
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=99.44 E-value=2.5e-13 Score=143.72 Aligned_cols=77 Identities=23% Similarity=0.354 Sum_probs=68.0
Q ss_pred CCCCCCHHHHHHH------HHHHHHhhC-CcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCChhHHHhhhc
Q 048028 108 RHRGVSGGERRRV------SIGIHIIHD-PILLFLDEPTSGLDSTSAFMVVNVLQRIAKSGSIVIMSIHQPSYRILSLLD 180 (592)
Q Consensus 108 ~~~~LSgGerqRv------~ia~~L~~~-p~lllLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~H~~~~~i~~~~D 180 (592)
.++.+|||||||+ ++|++|+.+ |++|+|||||+|||+..+..+.+.|+++.+ +.+||++||++. +...+|
T Consensus 277 ~~~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~-~~~vi~~th~~~--~~~~~d 353 (371)
T 3auy_A 277 TIDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKS-IPQMIIITHHRE--LEDVAD 353 (371)
T ss_dssp CGGGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCCS-CSEEEEEESCGG--GGGGCS
T ss_pred chHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhcc-CCeEEEEEChHH--HHhhCC
Confidence 4567999999988 557888999 999999999999999999999999999753 568999999985 578999
Q ss_pred eEEEecC
Q 048028 181 RLIILSH 187 (592)
Q Consensus 181 ~v~ll~~ 187 (592)
++++|++
T Consensus 354 ~~~~l~k 360 (371)
T 3auy_A 354 VIINVKK 360 (371)
T ss_dssp EEEEEEE
T ss_pred EEEEEEe
Confidence 9999974
No 118
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=99.44 E-value=1.2e-16 Score=159.34 Aligned_cols=144 Identities=21% Similarity=0.251 Sum_probs=96.1
Q ss_pred CEEECCCCCcHHHHHHHHh---CCCCCCCceeEEEECCEecCcccccceeEEEccCCCCCCCCCHHHHHHHHHHccC--C
Q 048028 1 MAILGASGAGKTTLMDALA---GRIEKESLQGAVTLNGEVLESKLLKIISAYVMQDDLLFPMLTVEETLMFAAEFRL--P 75 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~---g~~~~~~~~G~I~i~g~~~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~--~ 75 (592)
++|+||||||||||+++|+ |...+ ..|+|.++|.+... ...+.+.+++|+..+++..++.|++........ .
T Consensus 30 i~l~G~~GsGKSTl~k~La~~lg~~~~--~~G~i~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~v~~~l~~~l~~~~~~~ 106 (246)
T 2bbw_A 30 AVILGPPGSGKGTVCQRIAQNFGLQHL--SSGHFLRENIKAST-EVGEMAKQYIEKSLLVPDHVITRLMMSELENRRGQH 106 (246)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHCCCCE--EHHHHHHHHHHTTC-HHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTCTTSC
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCeEe--cHHHHHHHHHhcCC-hHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCCe
Confidence 4799999999999999999 98663 45888877654321 122334556788888888899999986542100 0
Q ss_pred ---CCCCHHHHHHHHHHHHH--HcC------------CcccccccccCCCCCCCCHHHHHHHHHHHHH-hhCCcEEEEe-
Q 048028 76 ---RSVTKTKKQERVEALIN--QLG------------LRSAAKTFIGDERHRGVSGGERRRVSIGIHI-IHDPILLFLD- 136 (592)
Q Consensus 76 ---~~~~~~~~~~~v~~~l~--~lg------------L~~~~~~~vg~~~~~~LSgGerqRv~ia~~L-~~~p~lllLD- 136 (592)
...+... ++++.+.+ ..+ ++...+ +.+..+|| |+ +++ +.+|++++||
T Consensus 107 ~il~g~~~~~--~~~~~l~~~~~~~~vi~L~~~~~~~l~r~~~-----r~~~~lSg----rv---~al~~~~P~~lllD~ 172 (246)
T 2bbw_A 107 WLLDGFPRTL--GQAEALDKICEVDLVISLNIPFETLKDRLSR-----RWIHPPSG----RV---YNLDFNPPHVHGIDD 172 (246)
T ss_dssp EEEESCCCSH--HHHHHHHTTCCCCEEEEEECCHHHHHHHHHT-----EEEETTTT----EE---EETTTSCCSSTTBCT
T ss_pred EEEECCCCCH--HHHHHHHhhcCCCEEEEEECCHHHHHHHHHc-----CCCcCCCC----Cc---cccccCCCccccccc
Confidence 0111111 12222221 122 112222 33446998 66 677 9999999999
Q ss_pred ---CCCCCCCHHHHHHHHHHHHHHHHcC
Q 048028 137 ---EPTSGLDSTSAFMVVNVLQRIAKSG 161 (592)
Q Consensus 137 ---EPtsgLD~~~~~~i~~~l~~la~~g 161 (592)
|||+|||..+...+.+.++++.+++
T Consensus 173 ~~~EP~~~ld~~~~~~i~~~l~~~~~~~ 200 (246)
T 2bbw_A 173 VTGEPLVQQEDDKPEAVAARLRQYKDVA 200 (246)
T ss_dssp TTCCBCBCCGGGSHHHHHHHHHHHHHHH
T ss_pred ccccccccCCCCcHHHHHHHHHHHHHhH
Confidence 9999999999999999999987653
No 119
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=99.41 E-value=9.7e-16 Score=144.57 Aligned_cols=137 Identities=16% Similarity=0.208 Sum_probs=88.5
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCC-CceeEEEECCEecCc------cccc-ceeE----EEccCCCCCCCCCHHHHHHH
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKE-SLQGAVTLNGEVLES------KLLK-IISA----YVMQDDLLFPMLTVEETLMF 68 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~-~~~G~I~i~g~~~~~------~~~~-~~~~----yv~Q~~~l~~~lTV~E~l~f 68 (592)
++|+|+||||||||++.|+|.+++. -..|.|.++|.++.. ..++ +.++ +++|+..++ ++|
T Consensus 5 v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~----i~~---- 76 (171)
T 2f1r_A 5 LSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAF----IRR---- 76 (171)
T ss_dssp EEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEE----EEE----
T ss_pred EEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEE----Eec----
Confidence 4899999999999999999998753 126999999987421 2333 3456 888887655 111
Q ss_pred HHHccCCCCCCHHHHHHHHHHHHHH-cCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEE-------EEeCCCC
Q 048028 69 AAEFRLPRSVTKTKKQERVEALINQ-LGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILL-------FLDEPTS 140 (592)
Q Consensus 69 ~~~l~~~~~~~~~~~~~~v~~~l~~-lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~ll-------lLDEPts 140 (592)
...+....++++++. +. -.|+.+++ +||||||||++|||+++.+|++. .=|.|..
T Consensus 77 ----------~~~~~~a~l~~~i~~~l~---g~dt~i~E----glSgGq~qri~lARall~~p~i~~~~~~a~~~~~~~~ 139 (171)
T 2f1r_A 77 ----------VSEEEGNDLDWIYERYLS---DYDLVITE----GFSKAGKDRIVVVKKPEEVEHFRQGRILAVVCDERVD 139 (171)
T ss_dssp ----------CCHHHHTCHHHHHHHHTT---TCSEEEEE----SCGGGCCCEEEECSSGGGGGGGCSSCEEEEECSSCCS
T ss_pred ----------CChhhhhCHHHHHHhhCC---CCCEEEEC----CcCCCCCcEEEEEecccCCCccCccceEEEEecCCcc
Confidence 001112245666666 53 36888886 59999999999999999999873 2355532
Q ss_pred C---CCHHHHHHHHHHHHHHHHcCC
Q 048028 141 G---LDSTSAFMVVNVLQRIAKSGS 162 (592)
Q Consensus 141 g---LD~~~~~~i~~~l~~la~~g~ 162 (592)
+ +|......+.+.+.+..++|.
T Consensus 140 ~~~~f~~~~~~~~a~~i~~~~~~~~ 164 (171)
T 2f1r_A 140 GHKWFRRDEVERIAEFILSLLREGG 164 (171)
T ss_dssp SSCEECTTCHHHHHHHHHHHHTC--
T ss_pred cCcccCcccHHHHHHHHHHHHhccC
Confidence 2 344556777888777666653
No 120
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.41 E-value=1.1e-14 Score=155.87 Aligned_cols=141 Identities=16% Similarity=0.176 Sum_probs=82.4
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCcccccceeEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCH
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLESKLLKIISAYVMQDDLLFPMLTVEETLMFAAEFRLPRSVTK 80 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~ 80 (592)
++|+||||||||||+|+|+|...+.+..|.+.+++.+ ....+.+++++|++.+++.+||.||+.+..... .
T Consensus 34 I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~---t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~------~ 104 (418)
T 2qag_C 34 LMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKK---TVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVD------N 104 (418)
T ss_dssp EEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC--------CCEEEEEECC------CEEEEEEECC--------------
T ss_pred EEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCcc---ceeeeeEEEEEecCCcccceeeeechhhhhhcc------c
Confidence 3799999999999999999987643312322222211 112345789999998888999999987764321 1
Q ss_pred HHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCc---EEEEeCCC-CCCCHHHHHHHHHHHHH
Q 048028 81 TKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPI---LLFLDEPT-SGLDSTSAFMVVNVLQR 156 (592)
Q Consensus 81 ~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~---lllLDEPt-sgLD~~~~~~i~~~l~~ 156 (592)
.+..+.+.+.++ ..++.+++||+.||++++.+|+ +|++|||| +|||+... +.+++
T Consensus 105 ~~~~~~i~~~i~-----------------~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~----~~lk~ 163 (418)
T 2qag_C 105 SNCWQPVIDYID-----------------SKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDI----EFMKR 163 (418)
T ss_dssp ---CHHHHHHHH-----------------HHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHH----HHHHH
T ss_pred hhhHHHHHHHHH-----------------HHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHH----HHHHH
Confidence 111111222221 1266677889999999999999 99999999 69998773 44555
Q ss_pred HHHcCCEEEEEecCCh
Q 048028 157 IAKSGSIVIMSIHQPS 172 (592)
Q Consensus 157 la~~g~tvi~~~H~~~ 172 (592)
+.. +.++|+++|..+
T Consensus 164 L~~-~v~iIlVinK~D 178 (418)
T 2qag_C 164 LHE-KVNIIPLIAKAD 178 (418)
T ss_dssp HTT-TSEEEEEEESTT
T ss_pred Hhc-cCcEEEEEEccc
Confidence 543 678888877643
No 121
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=99.40 E-value=6.3e-16 Score=147.42 Aligned_cols=147 Identities=12% Similarity=0.016 Sum_probs=90.6
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCcc-cccceeEEEccCCCCCCCCCHHHHHHHHHHccCCCCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLESK-LLKIISAYVMQDDLLFPMLTVEETLMFAAEFRLPRSVT 79 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~~-~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~ 79 (592)
++|+||||||||||+++|+|. ++ .|.|.++|.++... ..++.++|++|+.. +++||.|++.+.+........
T Consensus 12 i~l~G~~GsGKSTl~~~La~~--~~--~g~i~i~~d~~~~~~~~~~~~~~~~~~~~--~~~~v~~~l~~~~~~~~~~~~- 84 (191)
T 1zp6_A 12 LLLSGHPGSGKSTIAEALANL--PG--VPKVHFHSDDLWGYIKHGRIDPWLPQSHQ--QNRMIMQIAADVAGRYAKEGY- 84 (191)
T ss_dssp EEEEECTTSCHHHHHHHHHTC--SS--SCEEEECTTHHHHTCCSSCCCTTSSSHHH--HHHHHHHHHHHHHHHHHHTSC-
T ss_pred EEEECCCCCCHHHHHHHHHhc--cC--CCeEEEcccchhhhhhcccccCCccchhh--hhHHHHHHHHHHHHHHhccCC-
Confidence 479999999999999999998 22 49999999765321 12234578887654 467899998765432100000
Q ss_pred HHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Q 048028 80 KTKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVNVLQRIAK 159 (592)
Q Consensus 80 ~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~la~ 159 (592)
...++.+++..++..... . +..+..+|+|++||+.++|++..+|+++ +|+.....+.+.++.+..
T Consensus 85 ----~~~~~~~~~~~~l~~~~~--~-~~~~~~ls~~~~~~v~~~R~~~r~~~~l--------ld~~~~~~~~~~~~~l~~ 149 (191)
T 1zp6_A 85 ----FVILDGVVRPDWLPAFTA--L-ARPLHYIVLRTTAAEAIERCLDRGGDSL--------SDPLVVADLHSQFADLGA 149 (191)
T ss_dssp ----EEEECSCCCTTTTHHHHT--T-CSCEEEEEEECCHHHHHHHHHTTCTTSC--------CCHHHHHHHHHHTTCCGG
T ss_pred ----eEEEeccCcHHHHHHHHh--c-CCCeEEEEecCCHHHHHHHHHhcCCCcc--------CCHHHHHHHHHHHhccCc
Confidence 000111111112211110 0 1123459999999999999999999876 688877777777766543
Q ss_pred cCCEEEEEec
Q 048028 160 SGSIVIMSIH 169 (592)
Q Consensus 160 ~g~tvi~~~H 169 (592)
.+..+|.+++
T Consensus 150 ~~~~~i~t~~ 159 (191)
T 1zp6_A 150 FEHHVLPVSG 159 (191)
T ss_dssp GGGGEEECTT
T ss_pred ccccEEECCC
Confidence 3333444443
No 122
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=99.39 E-value=3.2e-16 Score=165.60 Aligned_cols=83 Identities=10% Similarity=-0.079 Sum_probs=60.2
Q ss_pred CCHHHHHHHHHHHHHh-hCCcEEEEeC---CC------CCCCHHHHHHHHHHHHHHHH-cCCEEEEEecCChhHHHhhhc
Q 048028 112 VSGGERRRVSIGIHII-HDPILLFLDE---PT------SGLDSTSAFMVVNVLQRIAK-SGSIVIMSIHQPSYRILSLLD 180 (592)
Q Consensus 112 LSgGerqRv~ia~~L~-~~p~lllLDE---Pt------sgLD~~~~~~i~~~l~~la~-~g~tvi~~~H~~~~~i~~~~D 180 (592)
+|+|++||..+++++. .+|++++||| |+ .++|...+..+.+.|+++.+ .|.++++++|. + +..+++|
T Consensus 259 ~~~~~~~~~~i~~~~~~~~~~lllLdE~~~p~~~~g~~~sld~~~r~~l~~~l~~l~~~~~~~ililde~-~-~~~r~~~ 336 (365)
T 1lw7_A 259 IQYEGKAHPFLDSMIKEYPFDVTILLKNNTEWVDDGLRSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESP-S-YLDRYNQ 336 (365)
T ss_dssp HHHHSCCCHHHHHHHHHSCCSEEEEEECCCC-----------CCSHHHHHHHHHHHHHGGGCCCEEEECS-S-HHHHHHH
T ss_pred HHHcCCCCHHHHHHHhhcCCCEEEECCCCCCcccCCCcCCccHHHHHHHHHHHHHHHHHcCCCEEEeCCC-C-HHHHHHH
Confidence 6677788888888775 5999999999 65 58999999999999999865 48888888865 4 4677888
Q ss_pred eEEEecCCeEeeecChhh
Q 048028 181 RLIILSHGQSVYNETPSN 198 (592)
Q Consensus 181 ~v~ll~~G~~v~~g~~~~ 198 (592)
++..+++ ++..+++++
T Consensus 337 ~i~~i~~--~l~~~~~~~ 352 (365)
T 1lw7_A 337 VKAVIEK--VLNEEEISE 352 (365)
T ss_dssp HHHHHHH--HTSCCCCSS
T ss_pred HHHHHHH--HhcccchhH
Confidence 8877764 344444444
No 123
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=99.38 E-value=1.7e-13 Score=143.45 Aligned_cols=127 Identities=16% Similarity=0.070 Sum_probs=87.4
Q ss_pred CEEECCCCCcHHHHHHHHhCCCC-CCCceeEEEEC-CEecCcccccceeEEEccCCCCCCCCCHHHHHHHHHHccCCCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRIE-KESLQGAVTLN-GEVLESKLLKIISAYVMQDDLLFPMLTVEETLMFAAEFRLPRSV 78 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~-~~~~~G~I~i~-g~~~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~~~~~ 78 (592)
++|+||||||||||+|+|+|... +. +|+|.++ |..... ..++.+++++|+..++++.||+|+- + ...
T Consensus 218 ~~lvG~sG~GKSTLln~L~g~~~~~~--~G~I~~~~G~g~~t-t~~~~i~~v~q~~~l~dtpgv~e~~-----l---~~l 286 (358)
T 2rcn_A 218 SIFAGQSGVGKSSLLNALLGLQNEIL--TNDVSNVSGLGQHT-TTAARLYHFPHGGDVIDSPGVREFG-----L---WHL 286 (358)
T ss_dssp EEEECCTTSSHHHHHHHHHCCSSCCC--CC--------------CCCEEEECTTSCEEEECHHHHTCC-----C---CCC
T ss_pred EEEECCCCccHHHHHHHHhccccccc--cCCccccCCCCccc-eEEEEEEEECCCCEecCcccHHHhh-----h---cCC
Confidence 48999999999999999999986 54 5999987 765432 2345689999999999999999841 1 234
Q ss_pred CHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 048028 79 TKTKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVNVLQRIA 158 (592)
Q Consensus 79 ~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~la 158 (592)
++++..+.+.++++.+|+.+..|... .++| ||+||++||+++ +++.-.....+++++++
T Consensus 287 ~~~e~~~~~~e~l~~~gl~~f~~~~~-----~~lS-G~~~r~ala~gl---------------i~~~R~~~y~~l~~e~~ 345 (358)
T 2rcn_A 287 EPEQITQGFVEFHDYLGHCKYRDCKH-----DADP-GCAIREAVENGA---------------IAETRFENYHRILESMA 345 (358)
T ss_dssp CHHHHHHTSGGGGGGTTCSSSTTCCS-----SSCT-TCHHHHHHHHTS---------------SCHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHHcCCchhcCCCc-----ccCC-HHHHHHHHHhcC---------------CCHHHHHHHHHHHHHHH
Confidence 56666777889999999988776654 4599 999999999864 23444445556666654
Q ss_pred H
Q 048028 159 K 159 (592)
Q Consensus 159 ~ 159 (592)
+
T Consensus 346 ~ 346 (358)
T 2rcn_A 346 Q 346 (358)
T ss_dssp -
T ss_pred h
Confidence 3
No 124
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=99.37 E-value=1.2e-13 Score=146.28 Aligned_cols=119 Identities=18% Similarity=0.340 Sum_probs=87.6
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCcccccceeEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCH
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLESKLLKIISAYVMQDDLLFPMLTVEETLMFAAEFRLPRSVTK 80 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~ 80 (592)
++|+||||||||||+++|+|.+++. .+|+|.+.|.++.. ..++.++||+|..
T Consensus 139 i~ivG~~GsGKTTll~~l~~~~~~~-~~g~I~~~e~~~e~-~~~~~~~~v~Q~~-------------------------- 190 (372)
T 2ewv_A 139 ILVTGPTGSGKSTTIASMIDYINQT-KSYHIITIEDPIEY-VFKHKKSIVNQRE-------------------------- 190 (372)
T ss_dssp EEEECSSSSSHHHHHHHHHHHHHHH-SCCEEEEEESSCCS-CCCCSSSEEEEEE--------------------------
T ss_pred EEEECCCCCCHHHHHHHHHhhcCcC-CCcEEEEecccHhh-hhccCceEEEeee--------------------------
Confidence 4799999999999999999997642 15999877766542 3445567888841
Q ss_pred HHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc
Q 048028 81 TKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVNVLQRIAKS 160 (592)
Q Consensus 81 ~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~la~~ 160 (592)
+|++. ..+ +.+|+++|..+|+++++|||+ |..+... .++. +..
T Consensus 191 -------------~g~~~-----------~~~------~~~l~~~L~~~pd~illdE~~---d~e~~~~---~l~~-~~~ 233 (372)
T 2ewv_A 191 -------------VGEDT-----------KSF------ADALRAALREDPDVIFVGEMR---DLETVET---ALRA-AET 233 (372)
T ss_dssp -------------BTTTB-----------SCS------HHHHHHHTTSCCSEEEESCCC---SHHHHHH---HHHH-HTT
T ss_pred -------------cCCCH-----------HHH------HHHHHHHhhhCcCEEEECCCC---CHHHHHH---HHHH-Hhc
Confidence 22211 124 469999999999999999999 7766443 3433 356
Q ss_pred CCEEEEEecCChhHHHhhhceEEEec
Q 048028 161 GSIVIMSIHQPSYRILSLLDRLIILS 186 (592)
Q Consensus 161 g~tvi~~~H~~~~~i~~~~D~v~ll~ 186 (592)
|.+++.|+|+.+ +.+.+||++.|.
T Consensus 234 g~~vi~t~H~~~--~~~~~~rl~~l~ 257 (372)
T 2ewv_A 234 GHLVFGTLHTNT--AIDTIHRIVDIF 257 (372)
T ss_dssp TCEEEECCCCCS--HHHHHHHHHHTS
T ss_pred CCEEEEEECcch--HHHHHHHHHHhc
Confidence 889999999965 678899987764
No 125
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=99.34 E-value=1.3e-12 Score=140.96 Aligned_cols=76 Identities=18% Similarity=0.254 Sum_probs=69.0
Q ss_pred CCCCHHHHHHHHHHHHHh----hCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCChhHHHhhhceEEEe
Q 048028 110 RGVSGGERRRVSIGIHII----HDPILLFLDEPTSGLDSTSAFMVVNVLQRIAKSGSIVIMSIHQPSYRILSLLDRLIIL 185 (592)
Q Consensus 110 ~~LSgGerqRv~ia~~L~----~~p~lllLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~H~~~~~i~~~~D~v~ll 185 (592)
..||||||||++||++|+ .+|++++|||||++||+..+..+.+.|+++.+++.++|+++|++ +....+|+++.+
T Consensus 332 ~~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~~ii~th~~--~~~~~~d~~~~~ 409 (430)
T 1w1w_A 332 EYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKN--TMFEKSDALVGV 409 (430)
T ss_dssp GGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCH--HHHTTCSEEEEE
T ss_pred ccCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcCCCEEEEEECCH--HHHHhCCEEEEE
Confidence 459999999999999999 58999999999999999999999999999876678999999995 467889999999
Q ss_pred cC
Q 048028 186 SH 187 (592)
Q Consensus 186 ~~ 187 (592)
..
T Consensus 410 ~~ 411 (430)
T 1w1w_A 410 YR 411 (430)
T ss_dssp EE
T ss_pred EE
Confidence 63
No 126
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=99.30 E-value=2.8e-12 Score=126.36 Aligned_cols=61 Identities=21% Similarity=0.240 Sum_probs=42.3
Q ss_pred hCCcEEEEeCCCCCCCHH-------H-----HHHHHHHHHHHHHc-CCEEEEEecCChhH------------------HH
Q 048028 128 HDPILLFLDEPTSGLDST-------S-----AFMVVNVLQRIAKS-GSIVIMSIHQPSYR------------------IL 176 (592)
Q Consensus 128 ~~p~lllLDEPtsgLD~~-------~-----~~~i~~~l~~la~~-g~tvi~~~H~~~~~------------------i~ 176 (592)
.+|+++++|||++.+|+. . ..++++.|++++++ |.|||+++|..... +.
T Consensus 118 ~~~~lliiD~~~~~~~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~~~tvi~~~h~~~~~~~~~~~~~~~~~~~g~~~~~ 197 (243)
T 1n0w_A 118 SRYALLIVDSATALYRTDYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIA 197 (243)
T ss_dssp SCEEEEEEETSSGGGC-------CHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC-------------------------C
T ss_pred CCceEEEEeCchHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeeeecCCCccccCCCcccCCccChhh
Confidence 489999999999999975 3 35566777777764 99999999965421 12
Q ss_pred hhhceEEEecCC
Q 048028 177 SLLDRLIILSHG 188 (592)
Q Consensus 177 ~~~D~v~ll~~G 188 (592)
..+|++++|++|
T Consensus 198 ~~~d~vi~l~~~ 209 (243)
T 1n0w_A 198 HASTTRLYLRKG 209 (243)
T ss_dssp CTTCEEEEEEEC
T ss_pred hcCcEEEEEEEc
Confidence 279999999875
No 127
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=99.29 E-value=3.1e-12 Score=134.82 Aligned_cols=139 Identities=17% Similarity=0.090 Sum_probs=92.3
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEec-CcccccceeEEEc-cCCCCCCCCCHHHHHHHHHHccCCCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVL-ESKLLKIISAYVM-QDDLLFPMLTVEETLMFAAEFRLPRSV 78 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~-~~~~~~~~~~yv~-Q~~~l~~~lTV~E~l~f~~~l~~~~~~ 78 (592)
++|+||||||||||+|+|+|.+++. +|.|.++|..- .....++.++|++ |++.+-
T Consensus 178 i~ivG~sGsGKSTll~~l~~~~~~~--~g~I~ie~~~e~~~~~~~~~v~~v~~q~~~~~--------------------- 234 (361)
T 2gza_A 178 IVVAGETGSGKTTLMKALMQEIPFD--QRLITIEDVPELFLPDHPNHVHLFYPSEAKEE--------------------- 234 (361)
T ss_dssp EEEEESSSSCHHHHHHHHHTTSCTT--SCEEEEESSSCCCCTTCSSEEEEECC---------------------------
T ss_pred EEEECCCCCCHHHHHHHHHhcCCCC--ceEEEECCccccCccccCCEEEEeecCccccc---------------------
Confidence 4799999999999999999998754 59999998531 1122456688988 654320
Q ss_pred CHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 048028 79 TKTKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVNVLQRIA 158 (592)
Q Consensus 79 ~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~la 158 (592)
++++...|-.|+.++..+|+.+++|||+. .++.+.++.+.
T Consensus 235 ---------------------------------~~~~~t~~~~i~~~l~~~pd~~l~~e~r~-------~~~~~~l~~l~ 274 (361)
T 2gza_A 235 ---------------------------------ENAPVTAATLLRSCLRMKPTRILLAELRG-------GEAYDFINVAA 274 (361)
T ss_dssp -------------------------------------CCHHHHHHHHTTSCCSEEEESCCCS-------THHHHHHHHHH
T ss_pred ---------------------------------cccccCHHHHHHHHHhcCCCEEEEcCchH-------HHHHHHHHHHh
Confidence 11222345555556666899999999985 24556677765
Q ss_pred HcCCEEEEEecCChhHHHhhhceEEEecCCeEee-ecChhhHHHHHH
Q 048028 159 KSGSIVIMSIHQPSYRILSLLDRLIILSHGQSVY-NETPSNLAQFFA 204 (592)
Q Consensus 159 ~~g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~-~g~~~~~~~~f~ 204 (592)
..+.|++.++|..+ ....+||+..+..|.... .-+.+.+.+.+.
T Consensus 275 ~g~~~~l~t~H~~~--~~~~~~Rl~~l~~~~~~~~~~~~~~i~~~l~ 319 (361)
T 2gza_A 275 SGHGGSITSCHAGS--CELTFERLALMVLQNRQGRQLPYEIIRRLLY 319 (361)
T ss_dssp TTCCSCEEEEECSS--HHHHHHHHHHHHTTSTTGGGSCHHHHHHHHH
T ss_pred cCCCeEEEEECCCC--HHHHHHHHHHHHhccccccCCCHHHHHHHHH
Confidence 54567899999975 678899999998875322 233344444443
No 128
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=99.28 E-value=1.3e-12 Score=120.28 Aligned_cols=45 Identities=13% Similarity=0.276 Sum_probs=38.0
Q ss_pred hhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCE-EEEEecCCh
Q 048028 127 IHDPILLFLDEPTSGLDSTSAFMVVNVLQRIAKSGSI-VIMSIHQPS 172 (592)
Q Consensus 127 ~~~p~lllLDEPtsgLD~~~~~~i~~~l~~la~~g~t-vi~~~H~~~ 172 (592)
+.+|++|++|||++ +|...+..+.++++++.++|++ +|+++|.+.
T Consensus 81 ~~~~~lLilDE~~~-~~~~~~~~l~~li~~~~~~g~~~iiits~~~p 126 (149)
T 2kjq_A 81 AFEAEYLAVDQVEK-LGNEEQALLFSIFNRFRNSGKGFLLLGSEYTP 126 (149)
T ss_dssp GGGCSEEEEESTTC-CCSHHHHHHHHHHHHHHHHTCCEEEEEESSCT
T ss_pred HhCCCEEEEeCccc-cChHHHHHHHHHHHHHHHcCCcEEEEECCCCH
Confidence 45799999999998 6666688999999999888888 899999654
No 129
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.27 E-value=2.5e-12 Score=134.46 Aligned_cols=136 Identities=14% Similarity=0.114 Sum_probs=74.1
Q ss_pred CEEECCCCCcHHHHHHHHhC-CCCCCCceeEEEECCEecCcc-cccceeEEEccCCCCCCCCCHHHHHHHHHHccCCCCC
Q 048028 1 MAILGASGAGKTTLMDALAG-RIEKESLQGAVTLNGEVLESK-LLKIISAYVMQDDLLFPMLTVEETLMFAAEFRLPRSV 78 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g-~~~~~~~~G~I~i~g~~~~~~-~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~~~~~ 78 (592)
+.|.||||+|||||+++|++ +..+ ..|++.++|.+.... ..+..+++++|.+.+.-..+ + .. ..
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~l~~~--~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-------~~---~~ 104 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLESIFGP--GVYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPS--D-------MG---NN 104 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHHHSCT--TCCC------------------CCEECSSEEEECCC----------------C
T ss_pred EEEECCCCCCHHHHHHHHHHHHcCC--CCCeEEecceeecccccccceeeeecccceEEecHh--h-------cC---Cc
Confidence 36899999999999999999 5554 359999998765421 22445678888764321111 0 00 00
Q ss_pred CHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 048028 79 TKTKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVNVLQRIA 158 (592)
Q Consensus 79 ~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~la 158 (592)
.. ..+++.++.+.-....+..+ .+|| +..+|+++++|||++ ||..++..+.+.+++..
T Consensus 105 ~~----~~~~~~i~~~~~~~~~~~~~------~ls~-----------l~~~~~vlilDE~~~-L~~~~~~~L~~~le~~~ 162 (354)
T 1sxj_E 105 DR----IVIQELLKEVAQMEQVDFQD------SKDG-----------LAHRYKCVIINEANS-LTKDAQAALRRTMEKYS 162 (354)
T ss_dssp CH----HHHHHHHHHHTTTTC-----------------------------CCEEEEEECTTS-SCHHHHHHHHHHHHHST
T ss_pred ch----HHHHHHHHHHHHhccccccc------cccc-----------cCCCCeEEEEeCccc-cCHHHHHHHHHHHHhhc
Confidence 11 12334444432211111111 3566 788999999999999 99999999999998864
Q ss_pred HcCCEEEEEecCChh
Q 048028 159 KSGSIVIMSIHQPSY 173 (592)
Q Consensus 159 ~~g~tvi~~~H~~~~ 173 (592)
.+.++|+++|+++.
T Consensus 163 -~~~~~Il~t~~~~~ 176 (354)
T 1sxj_E 163 -KNIRLIMVCDSMSP 176 (354)
T ss_dssp -TTEEEEEEESCSCS
T ss_pred -CCCEEEEEeCCHHH
Confidence 36789999999864
No 130
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=99.25 E-value=2.3e-13 Score=139.17 Aligned_cols=127 Identities=14% Similarity=0.160 Sum_probs=84.5
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCcccccceeEEEccCCCCCCCCCHHHHHHHHHH---ccCCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLESKLLKIISAYVMQDDLLFPMLTVEETLMFAAE---FRLPRS 77 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~---l~~~~~ 77 (592)
++|.||||||||||.+.|++.+.+ .| . . ++.+.+|+||+.+++. ++++++.+... +.....
T Consensus 34 i~I~G~sGsGKSTla~~L~~~l~~---~g------~-----~-~~~~~iv~~D~f~~~~-~~~~~l~~~~~~~~l~~~~g 97 (290)
T 1odf_A 34 IFFSGPQGSGKSFTSIQIYNHLME---KY------G-----G-EKSIGYASIDDFYLTH-EDQLKLNEQFKNNKLLQGRG 97 (290)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHH---HH------G-----G-GSCEEEEEGGGGBCCH-HHHHHHHHHTTTCGGGSSSC
T ss_pred EEEECCCCCCHHHHHHHHHHHhhh---cC------C-----C-CceEEEeccccccCCh-HHHHHHhccccccchhhhcc
Confidence 589999999999999999998752 12 0 1 3345566999998875 88899887631 100011
Q ss_pred CCHHHHHHHHHHHHHHcCCc--cc--ccccccCCCCCCCCHHHHHHHHHH--HHHhhCCcEEEEeCCCCCCCHHH
Q 048028 78 VTKTKKQERVEALINQLGLR--SA--AKTFIGDERHRGVSGGERRRVSIG--IHIIHDPILLFLDEPTSGLDSTS 146 (592)
Q Consensus 78 ~~~~~~~~~v~~~l~~lgL~--~~--~~~~vg~~~~~~LSgGerqRv~ia--~~L~~~p~lllLDEPtsgLD~~~ 146 (592)
.+...+.+...+.++.+.-. .. ....+ ..+...+||||+||+.+| +++ +|+|+|+|||++++|+..
T Consensus 98 ~p~a~d~~~l~~~l~~l~~g~~t~~~~~v~~-p~y~~~~sgGq~~R~~~a~~~~~--~~~IlIlEG~~~~ld~~~ 169 (290)
T 1odf_A 98 LPGTHDMKLLQEVLNTIFNNNEHPDQDTVVL-PKYDKSQFKGEGDRCPTGQKIKL--PVDIFILEGWFLGFNPIL 169 (290)
T ss_dssp STTSBCHHHHHHHHHHHTC------CCEEEE-CCEETTHHHHTCEECSSCEEEES--SCSEEEEEESSTTCCCCC
T ss_pred CcchhHHHHHHHHHHHhhccCccccCcceee-ccCccccCCccccccccccceEc--CCCEEEEeCccccCCccc
Confidence 12222234566677766432 00 11112 123467999999999987 555 999999999999999863
No 131
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.24 E-value=2.8e-13 Score=139.39 Aligned_cols=114 Identities=12% Similarity=0.156 Sum_probs=77.5
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEE---CCEecCcc--ccc-ceeEEEccCCCCC-----CCCCHHHHH--H
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTL---NGEVLESK--LLK-IISAYVMQDDLLF-----PMLTVEETL--M 67 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i---~g~~~~~~--~~~-~~~~yv~Q~~~l~-----~~lTV~E~l--~ 67 (592)
++|+||||||||||+|+|+ ..++ .+|+|.+ +|++++.. ..+ +.+||++|++.+. +++|+ |++ .
T Consensus 168 ~~l~G~sG~GKSTLln~l~-~~~~--~~G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~pg~~~~~l~~~lt~-e~l~~~ 243 (302)
T 2yv5_A 168 CILAGPSGVGKSSILSRLT-GEEL--RTQEVSEKTERGRHTTTGVRLIPFGKGSFVGDTPGFSKVEATMFVKP-REVRNY 243 (302)
T ss_dssp EEEECSTTSSHHHHHHHHH-SCCC--CCSCC---------CCCCEEEEEETTTEEEESSCCCSSCCGGGTSCG-GGGGGG
T ss_pred EEEECCCCCCHHHHHHHHH-HhhC--cccccccccCCCCCceeeEEEEEcCCCcEEEECcCcCcCcccccCCH-HHHHHH
Confidence 4799999999999999999 8765 4599999 89877542 122 2479999998653 78999 888 4
Q ss_pred HH------HHccCCCCCCHHHHHHHHHHHHHHcCCcc-cccccccCCCCCCCCHHHHHHHHHHHH
Q 048028 68 FA------AEFRLPRSVTKTKKQERVEALINQLGLRS-AAKTFIGDERHRGVSGGERRRVSIGIH 125 (592)
Q Consensus 68 f~------~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~LSgGerqRv~ia~~ 125 (592)
|. ++++ ......+...+++++++.++|.+ ..+... +.|||.++|++.|||+
T Consensus 244 f~~~~~~~c~~~--~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~-----~~ls~~~~R~~~~~~~ 301 (302)
T 2yv5_A 244 FREFLRYQCKYP--DCTHTNEPGCAVKEAVKNGEISCERYKSYL-----KIIKVYLEEIKELCRE 301 (302)
T ss_dssp CGGGHHHHHHST--TCCSSSCTTCHHHHHHHTTSSCHHHHHHHH-----HHTTCCCTTHHHHSSC
T ss_pred HHHHHHccCCCC--CCCCCCCCCCHHHHHHHcCCCCHHHHHHHH-----HHHHHHHHHHHHHhcc
Confidence 53 1222 11122334467999999999986 555554 4599999999999874
No 132
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.24 E-value=5.1e-13 Score=142.65 Aligned_cols=154 Identities=14% Similarity=0.151 Sum_probs=99.1
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCcccccceeEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCH
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLESKLLKIISAYVMQDDLLFPMLTVEETLMFAAEFRLPRSVTK 80 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~ 80 (592)
++|+||||||||||+|+|+|..- .|.-. .. ......++.++|++|++.+++.+||.||+.|+.. ...
T Consensus 45 vaLvG~nGaGKSTLln~L~G~~l----~g~~~-~~--~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~------~~~ 111 (427)
T 2qag_B 45 ILCVGETGLGKSTLMDTLFNTKF----EGEPA-TH--TQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQ------INK 111 (427)
T ss_dssp EEEECSTTSSSHHHHHHHHTSCC--------------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC-------CCH
T ss_pred EEEECCCCCCHHHHHHHHhCccc----cCCcC-CC--CCccceEeeEEEEeecCccccccchhhhhhhhhc------ccc
Confidence 48999999999999999999842 12111 00 0112234568999999998889999999866432 111
Q ss_pred H--------HHHHHHHHHHHHc-CCcc----ccccc----cc--CCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCC
Q 048028 81 T--------KKQERVEALINQL-GLRS----AAKTF----IG--DERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSG 141 (592)
Q Consensus 81 ~--------~~~~~v~~~l~~l-gL~~----~~~~~----vg--~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsg 141 (592)
. ..+++.++.++.. ++.. ..|+. +. .+...+++-.+ +.|+++|..+++++++|||+..
T Consensus 112 ~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~D---ieilk~L~~~~~vI~Vi~KtD~ 188 (427)
T 2qag_B 112 EDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLD---LVTMKKLDSKVNIIPIIAKADA 188 (427)
T ss_dssp HHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHH---HHHHHHTCSCSEEEEEESCGGG
T ss_pred chhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHH---HHHHHHHhhCCCEEEEEcchhc
Confidence 1 1234455666654 5432 12222 11 11124677776 7899999999999999999999
Q ss_pred CCHHHHHHHHHHHHH-HHHcCCEEEEEecC
Q 048028 142 LDSTSAFMVVNVLQR-IAKSGSIVIMSIHQ 170 (592)
Q Consensus 142 LD~~~~~~i~~~l~~-la~~g~tvi~~~H~ 170 (592)
|.+.....+.+.+++ +...|..|+.++.+
T Consensus 189 Lt~~E~~~l~~~I~~~L~~~gi~I~~is~~ 218 (427)
T 2qag_B 189 ISKSELTKFKIKITSELVSNGVQIYQFPTD 218 (427)
T ss_dssp SCHHHHHHHHHHHHHHHBTTBCCCCCCC--
T ss_pred cchHHHHHHHHHHHHHHHHcCCcEEecCCC
Confidence 999999999999987 77778888877754
No 133
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.24 E-value=2.2e-12 Score=121.93 Aligned_cols=48 Identities=15% Similarity=0.143 Sum_probs=42.9
Q ss_pred hhCCcEEEEeCCCC-CCCHHHHHHHHHHHHHHHHcCCEEEEEecCChhH
Q 048028 127 IHDPILLFLDEPTS-GLDSTSAFMVVNVLQRIAKSGSIVIMSIHQPSYR 174 (592)
Q Consensus 127 ~~~p~lllLDEPts-gLD~~~~~~i~~~l~~la~~g~tvi~~~H~~~~~ 174 (592)
+.+|++|+||||++ ++|+.....+.+++++..++|+++|++||.+..+
T Consensus 98 ~~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~~~~ 146 (180)
T 3ec2_A 98 VLNSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYSLQR 146 (180)
T ss_dssp HHTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCCSCC
T ss_pred hcCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCChhH
Confidence 45999999999995 9999999999999999888899999999998643
No 134
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=99.22 E-value=6.2e-13 Score=138.11 Aligned_cols=138 Identities=13% Similarity=0.084 Sum_probs=92.2
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCccc-------ccce--eEEEccCCCCCCCCCHHHHHHHHHH
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLESKL-------LKII--SAYVMQDDLLFPMLTVEETLMFAAE 71 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~~~-------~~~~--~~yv~Q~~~l~~~lTV~E~l~f~~~ 71 (592)
++|+||||||||||++.|+|.+++. +|+|.++|.++.... +++. +.+++|+..+.|.+||+|++.++..
T Consensus 132 i~lvG~nGaGKTTll~~Lag~l~~~--~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l~~~~~ 209 (328)
T 3e70_C 132 IMFVGFNGSGKTTTIAKLANWLKNH--GFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAIQHAKA 209 (328)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHHT--TCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhc--CCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHHHHHHh
Confidence 4799999999999999999998754 599999999875311 1222 4599999999999999999987532
Q ss_pred ccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHH
Q 048028 72 FRLPRSVTKTKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVV 151 (592)
Q Consensus 72 l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~ 151 (592)
... . . .+++..|+.+..+.. .++.-.+++++..++.+++||.+|. .+++
T Consensus 210 ~~~--d--------~--vliDtaG~~~~~~~l------------~~eL~~i~ral~~de~llvLDa~t~-------~~~~ 258 (328)
T 3e70_C 210 RGI--D--------V--VLIDTAGRSETNRNL------------MDEMKKIARVTKPNLVIFVGDALAG-------NAIV 258 (328)
T ss_dssp HTC--S--------E--EEEEECCSCCTTTCH------------HHHHHHHHHHHCCSEEEEEEEGGGT-------THHH
T ss_pred ccc--h--------h--hHHhhccchhHHHHH------------HHHHHHHHHHhcCCCCEEEEecHHH-------HHHH
Confidence 110 0 0 011222332221111 1222238888887777778875443 4566
Q ss_pred HHHHHHHH-cCCEEEEEecCC
Q 048028 152 NVLQRIAK-SGSIVIMSIHQP 171 (592)
Q Consensus 152 ~~l~~la~-~g~tvi~~~H~~ 171 (592)
+.++.+.+ .+.|+|++||..
T Consensus 259 ~~~~~~~~~~~it~iilTKlD 279 (328)
T 3e70_C 259 EQARQFNEAVKIDGIILTKLD 279 (328)
T ss_dssp HHHHHHHHHSCCCEEEEECGG
T ss_pred HHHHHHHHhcCCCEEEEeCcC
Confidence 66777764 488999999965
No 135
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=99.18 E-value=3e-14 Score=151.14 Aligned_cols=164 Identities=18% Similarity=0.179 Sum_probs=114.8
Q ss_pred CEEECCCCCcHHHHHHHHhCCCC----------CCCceeEEEECCEecCc----cccccee---EEEccCCCCCCCCCHH
Q 048028 1 MAILGASGAGKTTLMDALAGRIE----------KESLQGAVTLNGEVLES----KLLKIIS---AYVMQDDLLFPMLTVE 63 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~----------~~~~~G~I~i~g~~~~~----~~~~~~~---~yv~Q~~~l~~~lTV~ 63 (592)
++|+|+||||||||+|+|+|... ..+.+|.|.++|..++. ...++.+ .++.+.+.+.+..+..
T Consensus 23 vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~~~s~~ 102 (392)
T 1ni3_A 23 TGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTKGASTG 102 (392)
T ss_dssp EEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCCCCCSS
T ss_pred EEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEeccccccCCcHH
Confidence 48999999999999999999321 12457999998854321 1112222 4777888888888877
Q ss_pred HHH--HHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCC--cEEEEeCCC
Q 048028 64 ETL--MFAAEFRLPRSVTKTKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDP--ILLFLDEPT 139 (592)
Q Consensus 64 E~l--~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p--~lllLDEPt 139 (592)
|++ .|.+.++. ++.++..++..+ +..+..+||+. +| +++++|||+
T Consensus 103 e~L~~~fl~~ir~------------~d~il~Vvd~~~-------d~~i~~v~~~~------------dP~~di~ildeel 151 (392)
T 1ni3_A 103 VGLGNAFLSHVRA------------VDAIYQVVRAFD-------DAEIIHVEGDV------------DPIRDLSIIVDEL 151 (392)
T ss_dssp SSSCHHHHHHHTT------------CSEEEEEEECCC-------TTCSSCCSSSS------------CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH------------HHHHHHHHhccc-------cceeeeecccc------------Ccchhhhhchhhh
Confidence 766 44433331 111111122211 22233356653 89 999999999
Q ss_pred CCCCHHHHHHHHHHHHHH-HHcCCEEEEEecCChhHHHhhhceEE-EecCC-eEeeecChhh
Q 048028 140 SGLDSTSAFMVVNVLQRI-AKSGSIVIMSIHQPSYRILSLLDRLI-ILSHG-QSVYNETPSN 198 (592)
Q Consensus 140 sgLD~~~~~~i~~~l~~l-a~~g~tvi~~~H~~~~~i~~~~D~v~-ll~~G-~~v~~g~~~~ 198 (592)
.++|+....+.++.++++ ++.|.|++ +|+.. ++.++||++. +|.+| +.++.|+.++
T Consensus 152 ~~~D~~~~~k~~~~l~~~~~~~g~ti~--sh~~~-~~~~l~~~i~~~L~~G~~~~~~~~~~~ 210 (392)
T 1ni3_A 152 LIKDAEFVEKHLEGLRKITSRGANTLE--MKAKK-EEQAIIEKVYQYLTETKQPIRKGDWSN 210 (392)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCSSCSSS--HHHHH-HHHHHHHHHHHHHHTTCSCGGGSCCCH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCccc--cccHH-HHHHHHHHHHHHhccCCceeecCCCCH
Confidence 999999999999999998 76677754 99876 6899999999 99999 9998887643
No 136
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=99.11 E-value=2.7e-12 Score=138.91 Aligned_cols=141 Identities=13% Similarity=0.140 Sum_probs=91.7
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCcc-------c--ccceeEEEccCCCCCCCCCHHHHHHHHHH
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLESK-------L--LKIISAYVMQDDLLFPMLTVEETLMFAAE 71 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~~-------~--~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~ 71 (592)
++|+||||||||||+++|+|++++. +|+|.++|.+..+. . .++.++|++|+..+++.+||++++.++..
T Consensus 296 I~LVGpNGSGKTTLl~~LAgll~~~--~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~~tV~e~l~~a~~ 373 (503)
T 2yhs_A 296 ILMVGVNGVGKTTTIGKLARQFEQQ--GKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAAKA 373 (503)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHHT--TCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHHHHHHHHHHHHHH
T ss_pred EEEECCCcccHHHHHHHHHHHhhhc--CCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCHHHHHHHHHHHHHh
Confidence 4799999999999999999998743 59999987765321 1 24568999999888888999999988643
Q ss_pred ccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHh-hCC-cEEEEeCCCCCCCHHHHHH
Q 048028 72 FRLPRSVTKTKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHII-HDP-ILLFLDEPTSGLDSTSAFM 149 (592)
Q Consensus 72 l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~-~~p-~lllLDEPtsgLD~~~~~~ 149 (592)
-. .+ --+++..|..+.... +-.--+|++.+++++. ..| .+||..++|+|.|..
T Consensus 374 ~~----~D--------vVLIDTaGrl~~~~~---------lm~EL~kiv~iar~l~~~~P~evLLvLDattGq~al---- 428 (503)
T 2yhs_A 374 RN----ID--------VLIADTAGRLQNKSH---------LMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAV---- 428 (503)
T ss_dssp TT----CS--------EEEECCCCSCCCHHH---------HHHHHHHHHHHHHTTCTTCSSEEEEEEEGGGTHHHH----
T ss_pred cC----CC--------EEEEeCCCccchhhh---------HHHHHHHHHHHHHHhccCCCCeeEEEecCcccHHHH----
Confidence 11 00 001122222211111 1112347788888664 456 466665688886543
Q ss_pred HHHHHHHHHH-cCCEEEEEecC
Q 048028 150 VVNVLQRIAK-SGSIVIMSIHQ 170 (592)
Q Consensus 150 i~~~l~~la~-~g~tvi~~~H~ 170 (592)
+.++.+.+ -+.|.++.||-
T Consensus 429 --~~ak~f~~~~~itgvIlTKL 448 (503)
T 2yhs_A 429 --SQAKLFHEAVGLTGITLTKL 448 (503)
T ss_dssp --HHHHHHHHHTCCSEEEEECG
T ss_pred --HHHHHHHhhcCCCEEEEEcC
Confidence 33455544 37888999994
No 137
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.08 E-value=3.3e-12 Score=136.65 Aligned_cols=155 Identities=16% Similarity=0.156 Sum_probs=86.2
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCcccccceeEEEccCCCCCCCCCHHHHHHHH--HHccCCCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLESKLLKIISAYVMQDDLLFPMLTVEETLMFA--AEFRLPRSV 78 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~f~--~~l~~~~~~ 78 (592)
++|+|+|||||||||++|+|..+ .+.+.+.+. ....++++.+++. ..+++.++.-+. +.. ...+
T Consensus 160 VgLVG~~gAGKSTLL~~Lsg~~~--------~i~~~~ftT--l~p~~G~V~~~~~--~~~~l~DtpGli~~a~~--~~~L 225 (416)
T 1udx_A 160 VGLVGYPNAGKSSLLAAMTRAHP--------KIAPYPFTT--LSPNLGVVEVSEE--ERFTLADIPGIIEGASE--GKGL 225 (416)
T ss_dssp EEEECCGGGCHHHHHHHHCSSCC--------EECCCTTCS--SCCEEEEEECSSS--CEEEEEECCCCCCCGGG--SCCS
T ss_pred EEEECCCCCcHHHHHHHHHcCCc--------cccCcccce--ecceeeEEEecCc--ceEEEEeccccccchhh--hhhh
Confidence 48999999999999999999842 123332221 1222444544330 001111110000 000 0011
Q ss_pred CHHHH--HHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHH
Q 048028 79 TKTKK--QERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVNVLQR 156 (592)
Q Consensus 79 ~~~~~--~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~ 156 (592)
..... .++++.++..++++ +.....+|+|++||+.++++|+..|.++++ +++|...+ ..++.+++
T Consensus 226 ~~~fl~~~era~~lL~vvDls--------~~~~~~ls~g~~el~~la~aL~~~P~ILVl----NKlDl~~~-~~~~~l~~ 292 (416)
T 1udx_A 226 GLEFLRHIARTRVLLYVLDAA--------DEPLKTLETLRKEVGAYDPALLRRPSLVAL----NKVDLLEE-EAVKALAD 292 (416)
T ss_dssp CHHHHHHHTSSSEEEEEEETT--------SCHHHHHHHHHHHHHHHCHHHHHSCEEEEE----ECCTTSCH-HHHHHHHH
T ss_pred hHHHHHHHHHHHhhhEEeCCc--------cCCHHHHHHHHHHHHHHhHHhhcCCEEEEE----ECCChhhH-HHHHHHHH
Confidence 11100 11122233333433 123446999999999999999999999999 99999877 45555555
Q ss_pred HH-HcCCEEEEEe-cCChhHHHhhhceEE
Q 048028 157 IA-KSGSIVIMSI-HQPSYRILSLLDRLI 183 (592)
Q Consensus 157 la-~~g~tvi~~~-H~~~~~i~~~~D~v~ 183 (592)
.. +.+.+++.++ |.-. .+.++++.+.
T Consensus 293 ~l~~~g~~vi~iSA~~g~-gi~eL~~~i~ 320 (416)
T 1udx_A 293 ALAREGLAVLPVSALTGA-GLPALKEALH 320 (416)
T ss_dssp HHHTTTSCEEECCTTTCT-THHHHHHHHH
T ss_pred HHHhcCCeEEEEECCCcc-CHHHHHHHHH
Confidence 44 4576766554 5443 4677776654
No 138
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=99.07 E-value=6e-13 Score=142.57 Aligned_cols=122 Identities=13% Similarity=0.129 Sum_probs=81.5
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCcc-------cccceeEEEc---------cCCCC--CCC---
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLESK-------LLKIISAYVM---------QDDLL--FPM--- 59 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~~-------~~~~~~~yv~---------Q~~~l--~~~--- 59 (592)
++|+|||||||||||++|+|.+++. +|+|.+.|.++... ..++.+++.+ |++.. ++.
T Consensus 170 i~I~GpnGSGKTTlL~allg~l~~~--~g~I~~~ed~ie~~~~~~~q~~v~~~~g~~f~~~lr~~Lrq~pd~i~vgEiRd 247 (418)
T 1p9r_A 170 ILVTGPTGSGKSTTLYAGLQELNSS--ERNILTVEDPIEFDIDGIGQTQVNPRVDMTFARGLRAILRQDPDVVMVGEIRD 247 (418)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHCCT--TSCEEEEESSCCSCCSSSEEEECBGGGTBCHHHHHHHHGGGCCSEEEESCCCS
T ss_pred EEEECCCCCCHHHHHHHHHhhcCCC--CCEEEEecccchhccCCcceEEEccccCcCHHHHHHHHhccCCCeEEEcCcCC
Confidence 4799999999999999999998754 59999988776421 1223345544 88654 344
Q ss_pred -CCHHHHHHHHHHccCC-CCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEE
Q 048028 60 -LTVEETLMFAAEFRLP-RSVTKTKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLF 134 (592)
Q Consensus 60 -lTV~E~l~f~~~l~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lll 134 (592)
.|+.+++.++..-.+. .........+.+ +.+..+|+.+.. . +..|||||+|| ||++|+.+|++..
T Consensus 248 ~et~~~~l~a~~tGhlv~~tlh~~~~~~~i-~rL~~lgl~~~~--~-----~~~LSgg~~QR--LaraL~~~p~~~~ 314 (418)
T 1p9r_A 248 LETAQIAVQASLTGHLVMSTLHTNTAVGAV-TRLRDMGIEPFL--I-----SSSLLGVLAQR--LVRTLCPDCKEPY 314 (418)
T ss_dssp HHHHHHHHHHHHTTCEEEEEECCSSSHHHH-HHHHHHTCCHHH--H-----HHHEEEEEEEE--EEEEECTTTCEEE
T ss_pred HHHHHHHHHHHHhCCCcccccchhhHHHHH-HHHHHcCCcHHH--H-----HHHHHHHHHHH--hhhhhcCCCCccC
Confidence 6899998876421100 000111112223 356778887643 2 23699999999 9999999999875
No 139
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.06 E-value=1.3e-12 Score=136.42 Aligned_cols=146 Identities=19% Similarity=0.218 Sum_probs=92.6
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCcc-------cccceeEEEccCCCCCCCCC------------
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLESK-------LLKIISAYVMQDDLLFPMLT------------ 61 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~~-------~~~~~~~yv~Q~~~l~~~lT------------ 61 (592)
++|+||||||||||+|+|+|.+.+. +|+|.+.|.++... ..++.++|++|++.+++..+
T Consensus 58 v~i~G~~GaGKSTLl~~l~g~~~~~--~g~v~i~~~d~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~l~G~tr~ 135 (337)
T 2qm8_A 58 VGITGVPGVGKSTTIDALGSLLTAA--GHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNAFIRPSPSSGTLGGVAAK 135 (337)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHHHT--TCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTEEEECCCCCSSHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHhhhhC--CCEEEEEEEcCcccccccchHHHhhhheeeccCcccccccCcccccccchHHH
Confidence 4899999999999999999997653 59999999877432 23456799999988775422
Q ss_pred HHHHHHHH-H----------------------------HccCCCCCCHHHH---HHHHHHHHHHcCCcccccccccCCCC
Q 048028 62 VEETLMFA-A----------------------------EFRLPRSVTKTKK---QERVEALINQLGLRSAAKTFIGDERH 109 (592)
Q Consensus 62 V~E~l~f~-~----------------------------~l~~~~~~~~~~~---~~~v~~~l~~lgL~~~~~~~vg~~~~ 109 (592)
++|.+... . .+..+. ...+. ++.+.+....+.+ +..|. ...
T Consensus 136 ~~e~~~~~~~~~~~~iliDT~Gi~~~~~~v~~~~d~vl~v~d~~--~~~~~~~i~~~i~~~~~ivvl-NK~Dl----~~~ 208 (337)
T 2qm8_A 136 TRETMLLCEAAGFDVILVETVGVGQSETAVADLTDFFLVLMLPG--AGDELQGIKKGIFELADMIAV-NKADD----GDG 208 (337)
T ss_dssp HHHHHHHHHHTTCCEEEEEECSSSSCHHHHHTTSSEEEEEECSC--C------CCTTHHHHCSEEEE-ECCST----TCC
T ss_pred HHHHHHHHhcCCCCEEEEECCCCCcchhhHHhhCCEEEEEEcCC--CcccHHHHHHHHhccccEEEE-Echhc----cCc
Confidence 23332110 0 000000 00000 0011111111122 11111 112
Q ss_pred CCCCHHHHHHHHHHHHHhh------CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Q 048028 110 RGVSGGERRRVSIGIHIIH------DPILLFLDEPTSGLDSTSAFMVVNVLQRIAK 159 (592)
Q Consensus 110 ~~LSgGerqRv~ia~~L~~------~p~lllLDEPtsgLD~~~~~~i~~~l~~la~ 159 (592)
+.+|+|++|++..+++++. +|++++ ||++|.....++.+.|.++.+
T Consensus 209 ~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~----~Sal~g~gi~~L~~~I~~~~~ 260 (337)
T 2qm8_A 209 ERRASAAASEYRAALHILTPPSATWTPPVVT----ISGLHGKGLDSLWSRIEDHRS 260 (337)
T ss_dssp HHHHHHHHHHHHHHHTTBCCSBTTBCCCEEE----EBTTTTBSHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhccccccCCCCCEEE----EeCCCCCCHHHHHHHHHHHHH
Confidence 4589999999999999987 688876 999999999999999988754
No 140
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=99.05 E-value=1.1e-12 Score=144.16 Aligned_cols=162 Identities=14% Similarity=0.154 Sum_probs=93.6
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCcccccceeEEEccCCC----------------------CCC
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLESKLLKIISAYVMQDDL----------------------LFP 58 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~~~~~~~~~yv~Q~~~----------------------l~~ 58 (592)
++|+|||||||||||++|+|.+++. +|.|.++|.+--.......++++.|... +++
T Consensus 263 i~I~GptGSGKTTlL~aL~~~i~~~--~giitied~~E~~~~~~~~v~~~~r~~~~~~~~~~~~~l~~~LR~~PD~iivg 340 (511)
T 2oap_1 263 AIVVGETASGKTTTLNAIMMFIPPD--AKVVSIEDTREIKLYHENWIAEVTRTGMGEGEIDMYDLLRAALRQRPDYIIVG 340 (511)
T ss_dssp EEEEESTTSSHHHHHHHHGGGSCTT--CCEEEEESSCCCCCCCSSEEEEECBCCSSSCCBCHHHHHHTTGGGCCSEEEES
T ss_pred EEEECCCCCCHHHHHHHHHhhCCCC--CCEEEEcCcccccCCCCCeEEEEeecccccCCcCHHHHHHHhhccCCCeEEeC
Confidence 4799999999999999999998754 5999998864211111233455554433 223
Q ss_pred CCCHHHHHHHHHHccCCCC-CCHHHHHHHHHHHHHHcCCc-----c----cccccccCCCCCCCCHHHHHHHHHHHHHhh
Q 048028 59 MLTVEETLMFAAEFRLPRS-VTKTKKQERVEALINQLGLR-----S----AAKTFIGDERHRGVSGGERRRVSIGIHIIH 128 (592)
Q Consensus 59 ~lTV~E~l~f~~~l~~~~~-~~~~~~~~~v~~~l~~lgL~-----~----~~~~~vg~~~~~~LSgGerqRv~ia~~L~~ 128 (592)
.++..|++.+...+..... ++.- ....++++++++... . ..+..+ .....+|+|||||+.++.
T Consensus 341 Eir~~E~~~~l~a~~tGh~~~sT~-Ha~~~~~~l~Rl~~~~~~v~~~l~~~l~~vi--~~~~~~s~G~~~R~~~ai---- 413 (511)
T 2oap_1 341 EVRGREAQTLFQAMSTGHASYSTL-HAGDINQMVYRLESEPLKVPRSMLQFLDIAL--VQTMWVRGNTRLRRTKEV---- 413 (511)
T ss_dssp CCCSTHHHHHHHHHHTTCEEEEEE-ECSSHHHHHHHHHSTTTCCCGGGGGGCCEEE--EEEEEESSSCEEEEEEEE----
T ss_pred CcCHHHHHHHHHhhcCCCCccccc-ccCCHHHHHHHHHhcccccHHHHHhhccEEE--EEEEEEeCCCceEEEEEE----
Confidence 4455554433222211100 0000 001123334443321 1 111100 112357999999877641
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEE--EecCChhHHHhhhc
Q 048028 129 DPILLFLDEPTSGLDSTSAFMVVNVLQRIAKSGSIVIM--SIHQPSYRILSLLD 180 (592)
Q Consensus 129 ~p~lllLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~--~~H~~~~~i~~~~D 180 (592)
+ | |+|||+.....+++.+.++.++++|+++ ++|+.+ ++...++
T Consensus 414 ------~-E-~~GlDp~~~~~~~~~l~~~~~~~~tii~~~~sH~l~-ei~~~~g 458 (511)
T 2oap_1 414 ------N-E-ILGIDPVDKNLLVNQFVKWDPKEDKHIEVSMPKKLE-KMADFLG 458 (511)
T ss_dssp ------E-E-EEECCSSSSCCEEEEEEEEETTTTEEEECSCCTHHH-HHHHHHT
T ss_pred ------E-E-EcCcccCCCeEEEEEeEEEcccCCEEEEcccHHHHH-HHHHHcC
Confidence 1 7 9999998877777777777666888875 899886 5666654
No 141
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=99.03 E-value=6.6e-10 Score=118.27 Aligned_cols=62 Identities=15% Similarity=0.140 Sum_probs=47.2
Q ss_pred hCCcEEEEeCCCCCCCHHHH------------HHHHHHHHHHHHc-CCEEEEEecCCh------------------hHHH
Q 048028 128 HDPILLFLDEPTSGLDSTSA------------FMVVNVLQRIAKS-GSIVIMSIHQPS------------------YRIL 176 (592)
Q Consensus 128 ~~p~lllLDEPtsgLD~~~~------------~~i~~~l~~la~~-g~tvi~~~H~~~------------------~~i~ 176 (592)
.+|+++++|||++.+|+... .++++.|++++++ |.|||+++|... ..+.
T Consensus 272 ~~~~llVIDs~t~~~~~~~sg~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv~~~~~g~~~~~g~~~~p~gg~~l~ 351 (400)
T 3lda_A 272 SRFSLIVVDSVMALYRTDFSGRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQVVAQVDGGMAFNPDPKKPIGGNIMA 351 (400)
T ss_dssp SCEEEEEEETGGGGCC------CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC--------------------CHHH
T ss_pred cCCceEEecchhhhCchhhcCccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEeecccCCccccccCCCccCCchhHHH
Confidence 46999999999999996533 6788899999875 999999999821 1246
Q ss_pred hhhceEEEecCCe
Q 048028 177 SLLDRLIILSHGQ 189 (592)
Q Consensus 177 ~~~D~v~ll~~G~ 189 (592)
+.+|.++.|++++
T Consensus 352 ~~ad~vl~L~~~~ 364 (400)
T 3lda_A 352 YSSTTRLGFKKGK 364 (400)
T ss_dssp HHCSEEEEEEECS
T ss_pred HhcceEEEEEecC
Confidence 6789999998764
No 142
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=99.02 E-value=1.3e-12 Score=126.82 Aligned_cols=159 Identities=20% Similarity=0.190 Sum_probs=86.1
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCcccccceeEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCH
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLESKLLKIISAYVMQDDLLFPMLTVEETLMFAAEFRLPRSVTK 80 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~ 80 (592)
++|+||||||||||+++|+|++++. | ..++++++++..++. +..+++....+...+....
T Consensus 25 v~I~G~sGsGKSTl~~~l~~~~~~~---g---------------~~~g~v~~d~~~~~~-~~~~~~~~~~~~~~~~~~~- 84 (208)
T 3c8u_A 25 VALSGAPGSGKSTLSNPLAAALSAQ---G---------------LPAEVVPMDGFHLDN-RLLEPRGLLPRKGAPETFD- 84 (208)
T ss_dssp EEEECCTTSCTHHHHHHHHHHHHHT---T---------------CCEEEEESGGGBCCH-HHHGGGTCGGGTTSGGGBC-
T ss_pred EEEECCCCCCHHHHHHHHHHHHhhc---C---------------CceEEEecCCCcCCH-HHHHHhcccccCCCCchhh-
Confidence 5899999999999999999997632 2 113444444433321 1111110000000111111
Q ss_pred HHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHH-HHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Q 048028 81 TKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIG-IHIIHDPILLFLDEPTSGLDSTSAFMVVNVLQRIAK 159 (592)
Q Consensus 81 ~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia-~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~la~ 159 (592)
.....+.++.+...+..+..+.+ ...+.|+||+||++++ +.++.++.++++|||.. .++.+
T Consensus 85 ---~~~~~~~l~~l~~~~~i~~p~~d-~~~~~~~g~~~~v~~~~~~~i~eg~~~l~de~~~--------------~~l~~ 146 (208)
T 3c8u_A 85 ---FEGFQRLCHALKHQERVIYPLFD-RARDIAIAGAAEVGPECRVAIIEGNYLLFDAPGW--------------RDLTA 146 (208)
T ss_dssp ---HHHHHHHHHHHHHCSCEEEEEEE-TTTTEEEEEEEEECTTCCEEEEEESSTTBCSTTG--------------GGGGG
T ss_pred ---HHHHHHHHHHHhcCCceecccCC-ccccCCCCCceEEcCCCcEEEECCceeccCCchh--------------HHHHH
Confidence 12233344433222223333333 2335899999999987 77788888878888731 11112
Q ss_pred cCCEEEEEecCChhHHHhhhceEEEecCCeEeeecChhhHHHHHH
Q 048028 160 SGSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNETPSNLAQFFA 204 (592)
Q Consensus 160 ~g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~~~~~~~f~ 204 (592)
.--.++.+.+..+..+.+...|. +..|+ +.+++.+.+.
T Consensus 147 ~~d~~i~vd~~~~~~~~R~~~R~--~~~g~-----t~~~~~~~~~ 184 (208)
T 3c8u_A 147 IWDVSIRLEVPMADLEARLVQRW--LDHGL-----NHDAAVARAQ 184 (208)
T ss_dssp TCSEEEEECCCHHHHHHHHHHHH--HHTTC-----CHHHHHHHHH
T ss_pred hcCEEEEEeCCHHHHHHHHHHHH--HhcCC-----CHHHHHHHHH
Confidence 22357777777665566777773 34554 5566655443
No 143
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.01 E-value=7.2e-12 Score=130.58 Aligned_cols=151 Identities=21% Similarity=0.161 Sum_probs=92.6
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCC--CCceeEEEECCEecCc---ccccceeEEEccCCCCCCCCCHHHHHHHHHHccCC
Q 048028 1 MAILGASGAGKTTLMDALAGRIEK--ESLQGAVTLNGEVLES---KLLKIISAYVMQDDLLFPMLTVEETLMFAAEFRLP 75 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~--~~~~G~I~i~g~~~~~---~~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~~ 75 (592)
++|.||||+|||||+++|+|.... ...+|++..++.++.. ...++.+.|+.|.+.+.+ ++.|+|.........
T Consensus 54 ~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~~~~~~~~~~v~~iDE~~~l~~--~~~e~L~~~~~~~~~ 131 (334)
T 1in4_A 54 VLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILTSLERGDVLFIDEIHRLNK--AVEELLYSAIEDFQI 131 (334)
T ss_dssp EEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHHHHHHCCTTCEEEEETGGGCCH--HHHHHHHHHHHTSCC
T ss_pred EEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHHHHHHccCCCEEEEcchhhcCH--HHHHHHHHHHHhccc
Confidence 478999999999999999998632 1235666555544322 112356889999888776 788888544332210
Q ss_pred C-CCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHH
Q 048028 76 R-SVTKTKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVNVL 154 (592)
Q Consensus 76 ~-~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l 154 (592)
. -.......+.++..++.+++.. +++.+ ..||+|+|||+.++ .+||+.+..++.++|
T Consensus 132 ~i~~~~~~~~~~i~~~l~~~~li~-at~~~-----~~Ls~~l~sR~~l~----------------~~Ld~~~~~~l~~iL 189 (334)
T 1in4_A 132 DIMIGKGPSAKSIRIDIQPFTLVG-ATTRS-----GLLSSPLRSRFGII----------------LELDFYTVKELKEII 189 (334)
T ss_dssp CC---------------CCCEEEE-EESCG-----GGSCHHHHTTCSEE----------------EECCCCCHHHHHHHH
T ss_pred ceeeccCcccccccccCCCeEEEE-ecCCc-----ccCCHHHHHhcCce----------------eeCCCCCHHHHHHHH
Confidence 0 0011222344555666666654 44444 35999999998654 788999999999999
Q ss_pred HHHHHc-CCEEEEEecCChhHHHhhhce
Q 048028 155 QRIAKS-GSIVIMSIHQPSYRILSLLDR 181 (592)
Q Consensus 155 ~~la~~-g~tvi~~~H~~~~~i~~~~D~ 181 (592)
++.++. + +.|+++ .+..++++
T Consensus 190 ~~~~~~~~-----~~~~~~-~~~~ia~~ 211 (334)
T 1in4_A 190 KRAASLMD-----VEIEDA-AAEMIAKR 211 (334)
T ss_dssp HHHHHHTT-----CCBCHH-HHHHHHHT
T ss_pred HHHHHHcC-----CCcCHH-HHHHHHHh
Confidence 998764 4 356654 35555553
No 144
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=98.99 E-value=1.4e-11 Score=126.51 Aligned_cols=94 Identities=17% Similarity=0.259 Sum_probs=61.3
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEE---CCEecCccc--c-cceeEEEccCCC----------------CCC
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTL---NGEVLESKL--L-KIISAYVMQDDL----------------LFP 58 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i---~g~~~~~~~--~-~~~~~yv~Q~~~----------------l~~ 58 (592)
++|+||||||||||||+|+|+.++. +|+|.+ +|++++... . .+.+|||+|++. ++|
T Consensus 172 v~l~G~sG~GKSTll~~l~g~~~~~--~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~~~~~~~~~~~~~~l~~ 249 (301)
T 1u0l_A 172 STMAGLSGVGKSSLLNAINPGLKLR--VSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIEPEELKHYFK 249 (301)
T ss_dssp EEEECSTTSSHHHHHHHHSTTCCCC---------------CCCSCCEEECTTSCEEESSCSSTTCCCCSSCHHHHGGGST
T ss_pred EEEECCCCCcHHHHHHHhccccccc--ccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCccCCCcCCHHHHHHHHH
Confidence 4799999999999999999998754 599999 898875421 1 124799999974 689
Q ss_pred CCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCc-cccccc
Q 048028 59 MLTVEETLMFAAEFRLPRSVTKTKKQERVEALINQLGLR-SAAKTF 103 (592)
Q Consensus 59 ~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~ 103 (592)
++|+ ||+.|.. +. ...+...+++++++.+||. +..+..
T Consensus 250 ~~~~-~n~~~~~-~~-----~~~e~~~~v~~~l~~~~L~~~~~~~~ 288 (301)
T 1u0l_A 250 EFGD-KQCFFSD-CN-----HVDEPECGVKEAVENGEIAESRYENY 288 (301)
T ss_dssp TSSS-CCCSSTT-CC-----SSSCSSCHHHHHHHHTSSCHHHHHHH
T ss_pred hccc-ccCcCCC-Cc-----CCCCCCcHHHHHHHcCCCCHHHHHHH
Confidence 9999 9988752 11 1223346789999999995 555544
No 145
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=98.99 E-value=4.9e-11 Score=110.78 Aligned_cols=62 Identities=29% Similarity=0.275 Sum_probs=50.2
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCcccccceeEEEccCCCCCCCCCHHHHHHH
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLESKLLKIISAYVMQDDLLFPMLTVEETLMF 68 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~f 68 (592)
++|+||||||||||+|+|+|.+ +. +|+|.++|.++......+ .+++|+..++ .+||.|++.+
T Consensus 36 v~L~G~nGaGKTTLlr~l~g~l-~~--~G~V~~~g~~i~~~~~~~--~~~~q~~~l~-~ltv~e~l~~ 97 (158)
T 1htw_A 36 VYLNGDLGAGKTTLTRGMLQGI-GH--QGNVKSPTYTLVEEYNIA--GKMIYHFDLY-RLADPEELEF 97 (158)
T ss_dssp EEEECSTTSSHHHHHHHHHHHT-TC--CSCCCCCTTTCEEEEEET--TEEEEEEECT-TCSCTTHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHhC-CC--CCeEEECCEeeeeeccCC--Ccceeccccc-cCCcHHHHHH
Confidence 4899999999999999999998 53 599999998775321111 2799998888 8999999865
No 146
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=98.96 E-value=5.6e-14 Score=135.55 Aligned_cols=57 Identities=19% Similarity=0.232 Sum_probs=43.2
Q ss_pred HHH-HHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCChhHHHhhhceEEEecC
Q 048028 122 IGI-HIIHDPILLFLDEPTSGLDSTSAFMVVNVLQRIAKSGSIVIMSIHQPSYRILSLLDRLIILSH 187 (592)
Q Consensus 122 ia~-~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~H~~~~~i~~~~D~v~ll~~ 187 (592)
.++ +++.+|++++|||+|+++|..+...+.+.|++..++ +...|.+ ..+|+++++++
T Consensus 116 ~~~~~~l~~p~~~ilde~~~~~d~~~e~~i~~~l~~~~~~----~~~a~~~-----~~~D~iivnd~ 173 (198)
T 1lvg_A 116 CPIYIFVQPPSLDVLEQRLRLRNTETEESLAKRLAAARTD----MESSKEP-----GLFDLVIINDD 173 (198)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHTCSCHHHHHHHHHHHHHH----TTGGGST-----TTCSEEEECSS
T ss_pred CcEEEEEeCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHH----HHHhhcc-----CCceEEEECCC
Confidence 345 677788888889999999999999999999887654 2334522 56899888764
No 147
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.94 E-value=6.9e-11 Score=121.38 Aligned_cols=110 Identities=14% Similarity=0.150 Sum_probs=61.4
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEE---CCEecCcc-cccce-eEEEccCCCCCC----CCCHHHHHH--HH
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTL---NGEVLESK-LLKII-SAYVMQDDLLFP----MLTVEETLM--FA 69 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i---~g~~~~~~-~~~~~-~~yv~Q~~~l~~----~lTV~E~l~--f~ 69 (592)
++|+||||+|||||+|+|+|...+ .+|+|.+ +|+.++.. ...+. .+|++|.+.+.+ .+|+ |++. |.
T Consensus 176 ~~lvG~sG~GKSTLln~L~g~~~~--~~G~I~~~~~~G~~tt~~~~~~~~~~g~v~dtpg~~~~~l~~lt~-e~l~~~f~ 252 (307)
T 1t9h_A 176 TVFAGQSGVGKSSLLNAISPELGL--RTNEISEHLGRGKHTTRHVELIHTSGGLVADTPGFSSLEFTDIEE-EELGYTFP 252 (307)
T ss_dssp EEEEESHHHHHHHHHHHHCC---------------------CCCCCEEEETTEEEESSCSCSSCCCTTCCH-HHHGGGSH
T ss_pred EEEECCCCCCHHHHHHHhcccccc--cccceeeecCCCcccccHHHHhhcCCEEEecCCCccccccccCCH-HHHHHHHH
Confidence 489999999999999999999775 4599998 88776532 11122 699999987765 7899 8883 33
Q ss_pred H------HccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHH
Q 048028 70 A------EFRLPRSVTKTKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERR 118 (592)
Q Consensus 70 ~------~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerq 118 (592)
. .++........+...+++++++.++|.+...... ..++.|++|
T Consensus 253 ~~~~~~~~C~f~~c~h~~e~~~~v~~aLe~~~L~~~r~~~y-----~~lls~~~~ 302 (307)
T 1t9h_A 253 DIREKSSSCKFRGCLHLKEPKCAVKQAVEDGELKQYRYDHY-----VEFMTEIKD 302 (307)
T ss_dssp HHHHHGGGCSSTTCCSSSCSSCHHHHHHHHTSSCHHHHHHH-----HHHHHHHHT
T ss_pred HHHHHhhhccccCCCCccCHHHHHHHHHHhCCChHHHHHHH-----HHHHHHHhh
Confidence 1 1221111122233467899999999976433222 237777766
No 148
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=98.83 E-value=6.8e-10 Score=105.69 Aligned_cols=140 Identities=17% Similarity=0.168 Sum_probs=75.7
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCC---------CceeEEEECCEecCc-----ccccceeEEEccCCCC-CCCCCHHHH
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKE---------SLQGAVTLNGEVLES-----KLLKIISAYVMQDDLL-FPMLTVEET 65 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~---------~~~G~I~i~g~~~~~-----~~~~~~~~yv~Q~~~l-~~~lTV~E~ 65 (592)
++|+|+||||||||++.++|...+. ..+|+|.++|+++.- ....+..++++|.... ...++|.+.
T Consensus 32 v~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~ 111 (191)
T 1oix_A 32 VVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYDI 111 (191)
T ss_dssp EEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEEEEEET
T ss_pred EEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEEEEEEEC
Confidence 4899999999999999999986531 146899999976531 1111112222221000 000111111
Q ss_pred HHHHHHccCCCCCCHHHHHHHHHHHHH---HcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCC
Q 048028 66 LMFAAEFRLPRSVTKTKKQERVEALIN---QLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGL 142 (592)
Q Consensus 66 l~f~~~l~~~~~~~~~~~~~~v~~~l~---~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgL 142 (592)
. .....+.+..+++ ...-.+..-..+++. -+|..-..+++.+|++++.+|+++++| ||++
T Consensus 112 ~-------------~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK--~Dl~~~~~~~~~~a~~l~~~~~~~~ld--~Sal 174 (191)
T 1oix_A 112 A-------------KHLTYENVERWLKELRDHADSNIVIMLVGNK--SDLRHLRAVPTDEARAFAEKNGLSFIE--TSAL 174 (191)
T ss_dssp T-------------CHHHHHTHHHHHHHHHHHSCTTCEEEEEEEC--GGGGGGCCSCHHHHHHHHHHTTCEEEE--CCTT
T ss_pred c-------------CHHHHHHHHHHHHHHHHhcCCCCcEEEEEEC--cccccccccCHHHHHHHHHHcCCEEEE--EeCC
Confidence 0 0000011111111 111111111112221 123322234578899999999999999 9999
Q ss_pred CHHHHHHHHHHHHHH
Q 048028 143 DSTSAFMVVNVLQRI 157 (592)
Q Consensus 143 D~~~~~~i~~~l~~l 157 (592)
|..+..++++.|.+.
T Consensus 175 d~~~v~~l~~~l~~~ 189 (191)
T 1oix_A 175 DSTNVEAAFQTILTE 189 (191)
T ss_dssp TCTTHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHH
Confidence 999999999888753
No 149
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=98.79 E-value=4e-12 Score=128.93 Aligned_cols=114 Identities=17% Similarity=0.177 Sum_probs=76.0
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCcc---cccceeEEEccCC-CCCCCCCHHHHHHHHHHccCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLESK---LLKIISAYVMQDD-LLFPMLTVEETLMFAAEFRLPR 76 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~~---~~~~~~~yv~Q~~-~l~~~lTV~E~l~f~~~l~~~~ 76 (592)
++|.||||||||||+++|+|... . |.|.++|.++... ...+.+++++|+. ...|.+++.|++...+..+
T Consensus 47 vlL~Gp~GtGKTtLakala~~~~--~--~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r--- 119 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANESG--L--NFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRR--- 119 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHHTT--C--EEEEEETTTTCSSTTHHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC-----
T ss_pred EEEECCCCCcHHHHHHHHHHHcC--C--CEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhcCCCeEeeehhhhhhccc---
Confidence 47999999999999999999865 2 7899999876432 1234467778774 4566667777665422111
Q ss_pred CCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCC
Q 048028 77 SVTKTKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTS 140 (592)
Q Consensus 77 ~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPts 140 (592)
.. ...+ .+.+..++.+ ..|||||+||+.|++++.++|++| ||++.
T Consensus 120 --~~----~~~~------~~~~~~~~~l-----~~Lsgg~~~~~~i~ia~tn~p~~L--D~al~ 164 (274)
T 2x8a_A 120 --SD----RETG------ASVRVVNQLL-----TEMDGLEARQQVFIMAATNRPDII--DPAIL 164 (274)
T ss_dssp -------------------CTTHHHHHH-----HHHHTCCSTTCEEEEEEESCGGGS--CHHHH
T ss_pred --CC----Ccch------HHHHHHHHHH-----HhhhcccccCCEEEEeecCChhhC--CHhhc
Confidence 00 0000 1222233333 359999999999999999999985 88864
No 150
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=98.77 E-value=3.6e-09 Score=108.70 Aligned_cols=104 Identities=17% Similarity=0.251 Sum_probs=72.7
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCcccccceeEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCH
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLESKLLKIISAYVMQDDLLFPMLTVEETLMFAAEFRLPRSVTK 80 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~ 80 (592)
++|+|||||||||+++.|++.+.+. .|+|.+.+.+..+. + ..|
T Consensus 107 i~ivG~~GsGKTTl~~~LA~~l~~~--g~kV~lv~~D~~r~------~-------------a~e---------------- 149 (306)
T 1vma_A 107 IMVVGVNGTGKTTSCGKLAKMFVDE--GKSVVLAAADTFRA------A-------------AIE---------------- 149 (306)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHHT--TCCEEEEEECTTCH------H-------------HHH----------------
T ss_pred EEEEcCCCChHHHHHHHHHHHHHhc--CCEEEEEccccccH------H-------------HHH----------------
Confidence 4799999999999999999997643 47787766543210 0 011
Q ss_pred HHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHH---HHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 048028 81 TKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRV---SIGIHIIHDPILLFLDEPTSGLDSTSAFMVVNVLQRI 157 (592)
Q Consensus 81 ~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv---~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~l 157 (592)
....+.+.+|+... ...|+|+.+++ +|++++..+|+++++|||.. ......+++.|+++
T Consensus 150 -----qL~~~~~~~gl~~~----------~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~---~~~~~~l~~eL~~l 211 (306)
T 1vma_A 150 -----QLKIWGERVGATVI----------SHSEGADPAAVAFDAVAHALARNKDVVIIDTAGR---LHTKKNLMEELRKV 211 (306)
T ss_dssp -----HHHHHHHHHTCEEE----------CCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCC---CSCHHHHHHHHHHH
T ss_pred -----HHHHHHHHcCCcEE----------ecCCccCHHHHHHHHHHHHHhcCCCEEEEECCCc---hhhHHHHHHHHHHH
Confidence 12334455666431 23689999999 89999999999999999974 34555666666665
Q ss_pred HH
Q 048028 158 AK 159 (592)
Q Consensus 158 a~ 159 (592)
.+
T Consensus 212 ~~ 213 (306)
T 1vma_A 212 HR 213 (306)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 151
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=98.77 E-value=2.1e-10 Score=125.33 Aligned_cols=152 Identities=19% Similarity=0.226 Sum_probs=89.1
Q ss_pred CEEECCCCCcHHHHHHHHhC--CCCCCCceeEEEECCEecCcccccceeEEEccCCCCCCCC--CHHHHHHHHHH-ccCC
Q 048028 1 MAILGASGAGKTTLMDALAG--RIEKESLQGAVTLNGEVLESKLLKIISAYVMQDDLLFPML--TVEETLMFAAE-FRLP 75 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g--~~~~~~~~G~I~i~g~~~~~~~~~~~~~yv~Q~~~l~~~l--TV~E~l~f~~~-l~~~ 75 (592)
++|.|++||||||+|+.|.. +.+..+ |++.+.+.+.....+.. | ..+|++ +|.++...+.. ++
T Consensus 170 lLIaG~TGSGKSt~L~~li~sLl~~~~p--~~v~l~liDpK~~el~~---~-----~~lPhl~~~Vvtd~~~a~~~L~-- 237 (512)
T 2ius_A 170 LLVAGTTGSGASVGVNAMILSMLYKAQP--EDVRFIMIDPKMLELSV---Y-----EGIPHLLTEVVTDMKDAANALR-- 237 (512)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHTTCCT--TTEEEEEECCSSSGGGG---G-----TTCTTBSSSCBCSHHHHHHHHH--
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHhCCC--ceEEEEEECCchhhhhh---h-----ccCCcccceeecCHHHHHHHHH--
Confidence 47999999999999999875 333333 66666555543211111 0 011221 12222221111 11
Q ss_pred CCCCHHHHHHHHHHHHHHcCCcccccc--cccCCCCCCCCHHHHHHH----------HHHHHHhhCCc-EEEEeCCCCCC
Q 048028 76 RSVTKTKKQERVEALINQLGLRSAAKT--FIGDERHRGVSGGERRRV----------SIGIHIIHDPI-LLFLDEPTSGL 142 (592)
Q Consensus 76 ~~~~~~~~~~~v~~~l~~lgL~~~~~~--~vg~~~~~~LSgGerqRv----------~ia~~L~~~p~-lllLDEPtsgL 142 (592)
....+.++|. ++++..|+.+..+- .+. ..+|+||+||. .+++++...|. ++++||++.-+
T Consensus 238 --~~~~EmerR~-~ll~~~Gv~~i~~yn~~~~----~~~s~G~~~~~~~~~pg~~~~~~a~~l~~lP~ivlvIDE~~~ll 310 (512)
T 2ius_A 238 --WCVNEMERRY-KLMSALGVRNLAGYNEKIA----EADRMMRPIPDPYWKPGDSMDAQHPVLKKEPYIVVLVDEFADLM 310 (512)
T ss_dssp --HHHHHHHHHH-HHHHHTTCSSHHHHHHHHH----HHHHTTCCCBCTTC---------CCBCCCCCEEEEEEETHHHHH
T ss_pred --HHHHHHHHHH-HHHHHcCCccHHHHHHHHH----HHhhcCCcccccccccccchhccccccccCCcEEEEEeCHHHHH
Confidence 1123444553 78888888764321 111 24788887652 24555667888 78999999988
Q ss_pred CHHHHHHHHHHHHHHHHc----CCEEEEEecCCh
Q 048028 143 DSTSAFMVVNVLQRIAKS----GSIVIMSIHQPS 172 (592)
Q Consensus 143 D~~~~~~i~~~l~~la~~----g~tvi~~~H~~~ 172 (592)
|.. ...+.+.+.++++. |.++|+++|.|+
T Consensus 311 ~~~-~~~~~~~l~~Lar~gRa~GI~LIlaTQrp~ 343 (512)
T 2ius_A 311 MTV-GKKVEELIARLAQKARAAGIHLVLATQRPS 343 (512)
T ss_dssp HHH-HHHHHHHHHHHHHHCGGGTEEEEEEESCCC
T ss_pred hhh-hHHHHHHHHHHHHHhhhCCcEEEEEecCCc
Confidence 843 35566677766654 668999999998
No 152
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=98.75 E-value=1.2e-09 Score=107.54 Aligned_cols=60 Identities=17% Similarity=0.151 Sum_probs=45.7
Q ss_pred hCCcEEEEeCCCCCC--CHHHHHHHHHHHHHHHH-cCCEEEEEecCChhH-------HHhhhceEEEecC
Q 048028 128 HDPILLFLDEPTSGL--DSTSAFMVVNVLQRIAK-SGSIVIMSIHQPSYR-------ILSLLDRLIILSH 187 (592)
Q Consensus 128 ~~p~lllLDEPtsgL--D~~~~~~i~~~l~~la~-~g~tvi~~~H~~~~~-------i~~~~D~v~ll~~ 187 (592)
.+|+++++|||++.+ |+....+.+..+.++++ .|.|||+++|..... +.+.+|.++.|+.
T Consensus 127 ~~~~~vviD~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~D~vi~L~~ 196 (247)
T 2dr3_A 127 INAKRVVVDSVTTLYINKPAMARSIILQLKRVLAGTGCTSIFVSQVSVGERGFGGPGVEHGVDGIIRLDL 196 (247)
T ss_dssp HTCCEEEEETSGGGTTTCGGGHHHHHHHHHHHHHHTTCEEEEEEECC----CCC-CCHHHHSSEEEEEEE
T ss_pred hCCCEEEECCchHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCcccccccccceeEEEEEEEEE
Confidence 579999999999988 66556666666777654 589999999987631 4577899999974
No 153
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=98.74 E-value=1.1e-08 Score=104.65 Aligned_cols=136 Identities=19% Similarity=0.254 Sum_probs=83.8
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCcccccceeEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCH
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLESKLLKIISAYVMQDDLLFPMLTVEETLMFAAEFRLPRSVTK 80 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~ 80 (592)
++++||||+||||+++.|++...+. +| +.+.++.+|.. ..++.|.+...+.
T Consensus 108 i~lvG~~GsGKTTl~~~LA~~l~~~--~G---------------~~V~lv~~D~~---r~~a~eqL~~~~~--------- 158 (296)
T 2px0_A 108 IVLFGSTGAGKTTTLAKLAAISMLE--KH---------------KKIAFITTDTY---RIAAVEQLKTYAE--------- 158 (296)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHT--TC---------------CCEEEEECCCS---STTHHHHHHHHHT---------
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHh--cC---------------CEEEEEecCcc---cchHHHHHHHHHH---------
Confidence 4799999999999999999987532 25 12456666542 2355666544321
Q ss_pred HHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH--
Q 048028 81 TKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVNVLQRIA-- 158 (592)
Q Consensus 81 ~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~la-- 158 (592)
..|+.... ..+. +.-+.+|+ .+.+|+++|+| |+|+|+.....+.++.+-+.
T Consensus 159 ------------~~gl~~~~----------~~~~-~~l~~al~--~~~~~dlvIiD--T~G~~~~~~~~~~el~~~l~~~ 211 (296)
T 2px0_A 159 ------------LLQAPLEV----------CYTK-EEFQQAKE--LFSEYDHVFVD--TAGRNFKDPQYIDELKETIPFE 211 (296)
T ss_dssp ------------TTTCCCCB----------CSSH-HHHHHHHH--HGGGSSEEEEE--CCCCCTTSHHHHHHHHHHSCCC
T ss_pred ------------hcCCCeEe----------cCCH-HHHHHHHH--HhcCCCEEEEe--CCCCChhhHHHHHHHHHHHhhc
Confidence 12332110 0122 23344555 45999999999 99999876655544443332
Q ss_pred -HcCCEEEE-EecCChhHHHhhhceEEEecCCeEeee
Q 048028 159 -KSGSIVIM-SIHQPSYRILSLLDRLIILSHGQSVYN 193 (592)
Q Consensus 159 -~~g~tvi~-~~H~~~~~i~~~~D~v~ll~~G~~v~~ 193 (592)
..+.++++ ++|+.. ++.+.+|++..+..+.++..
T Consensus 212 ~~~~~~lVl~at~~~~-~~~~~~~~~~~l~~~giVlt 247 (296)
T 2px0_A 212 SSIQSFLVLSATAKYE-DMKHIVKRFSSVPVNQYIFT 247 (296)
T ss_dssp TTEEEEEEEETTBCHH-HHHHHTTTTSSSCCCEEEEE
T ss_pred CCCeEEEEEECCCCHH-HHHHHHHHHhcCCCCEEEEe
Confidence 22334444 478765 68888888777777777653
No 154
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=98.70 E-value=9.2e-09 Score=111.54 Aligned_cols=165 Identities=13% Similarity=0.114 Sum_probs=98.5
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCcee-EEEECCEecCcccccce-eEEEccCCCCCCCCCHHHHHHHHHHccCCCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQG-AVTLNGEVLESKLLKII-SAYVMQDDLLFPMLTVEETLMFAAEFRLPRSV 78 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G-~I~i~g~~~~~~~~~~~-~~yv~Q~~~l~~~lTV~E~l~f~~~l~~~~~~ 78 (592)
+.|.|+||+|||||+..+++...+. .| .|.+.+.+.+.....++ .+.... ... +. ++. ..+
T Consensus 206 iiI~G~pG~GKTtl~l~ia~~~~~~--~g~~Vl~~s~E~s~~~l~~r~~~~~~~-------~~~-~~------l~~-g~l 268 (454)
T 2r6a_A 206 IIVAARPSVGKTAFALNIAQNVATK--TNENVAIFSLEMSAQQLVMRMLCAEGN-------INA-QN------LRT-GKL 268 (454)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHHHH--SSCCEEEEESSSCHHHHHHHHHHHHHT-------CCH-HH------HHT-SCC
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHh--CCCcEEEEECCCCHHHHHHHHHHHHcC-------CCH-HH------Hhc-CCC
Confidence 4689999999999999998764321 13 34443322222111111 000000 000 01 111 122
Q ss_pred CHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHh--hCCcEEEEeCCCCCCCH--------HHHH
Q 048028 79 TKTKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHII--HDPILLFLDEPTSGLDS--------TSAF 148 (592)
Q Consensus 79 ~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~--~~p~lllLDEPtsgLD~--------~~~~ 148 (592)
+. +..+++.+.++.++..+.. +-+ ..++|.+|.+ +.++.++ .+|+++++|+++...++ ....
T Consensus 269 ~~-~~~~~~~~a~~~l~~~~l~---i~d--~~~~s~~~i~--~~~~~l~~~~~~~livID~l~~~~~~~~~~~~~~~~i~ 340 (454)
T 2r6a_A 269 TP-EDWGKLTMAMGSLSNAGIY---IDD--TPSIRVSDIR--AKCRRLKQESGLGMIVIDYLQLIQGSGRSKENRQQEVS 340 (454)
T ss_dssp CH-HHHHHHHHHHHHHHSSCEE---EEC--CTTCCHHHHH--HHHHHHHTTTCCCEEEEECGGGSCCSCC----CHHHHH
T ss_pred CH-HHHHHHHHHHHHHhcCCEE---EEC--CCCCCHHHHH--HHHHHHHHHcCCCEEEEccHHHhccCCCCCCCHHHHHH
Confidence 32 3344566666666543322 111 2368999987 5667776 68999999999997743 2346
Q ss_pred HHHHHHHHHHHc-CCEEEEEec---------C--Ch-------hHHHhhhceEEEecCCeE
Q 048028 149 MVVNVLQRIAKS-GSIVIMSIH---------Q--PS-------YRILSLLDRLIILSHGQS 190 (592)
Q Consensus 149 ~i~~~l~~la~~-g~tvi~~~H---------~--~~-------~~i~~~~D~v~ll~~G~~ 190 (592)
++.+.|++++++ |.+||+++| + |. ..+...+|.|++|++++.
T Consensus 341 ~i~~~Lk~lAke~~i~vi~~sql~r~~e~~~~~~p~lsdlr~Sg~ie~~aD~vi~l~r~~~ 401 (454)
T 2r6a_A 341 EISRSLKALARELEVPVIALSQLSRSVEQRQDKRPMMSDIRESGSIEQDADIVAFLYRDDY 401 (454)
T ss_dssp HHHHHHHHHHHHHTCCEEEEECCCTTSTTC---CCCTHHHHTTCSHHHHCSEEEEEEETTC
T ss_pred HHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCcHHHhhccchhHhhCCEEEEEecccc
Confidence 778888988875 899999999 2 43 136778999999987753
No 155
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=98.68 E-value=2.9e-08 Score=103.84 Aligned_cols=78 Identities=13% Similarity=0.160 Sum_probs=53.3
Q ss_pred HHHHHHHHHhhC--CcEEEEeCCCCCC----------CH---HHHHHHHHHHHHH----HHcCCEEEEEecCChh-----
Q 048028 118 RRVSIGIHIIHD--PILLFLDEPTSGL----------DS---TSAFMVVNVLQRI----AKSGSIVIMSIHQPSY----- 173 (592)
Q Consensus 118 qRv~ia~~L~~~--p~lllLDEPtsgL----------D~---~~~~~i~~~l~~l----a~~g~tvi~~~H~~~~----- 173 (592)
+-+.++++++.+ |+++++|||++.+ |+ ..+..+.+.+++| .+.|.+||++.|....
T Consensus 126 ~~l~~~~~l~~~~~~~lIVIDsl~~l~~~~e~~~~~gd~~~~~q~r~~~~~l~~L~~~a~~~~~tVI~inh~~~~~~~~~ 205 (349)
T 2zr9_A 126 QALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFINELREKIGVMF 205 (349)
T ss_dssp HHHHHHHHHHTTTCCSEEEEECGGGCCCHHHHTTC----CCCHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC-------
T ss_pred HHHHHHHHHHhcCCCCEEEEcChHhhcchhhhccccccchhhHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCccc
Confidence 345677888754 9999999999998 33 2333455555555 3458999999996431
Q ss_pred ----------HHHhhhceEEEecCCeEeeecC
Q 048028 174 ----------RILSLLDRLIILSHGQSVYNET 195 (592)
Q Consensus 174 ----------~i~~~~D~v~ll~~G~~v~~g~ 195 (592)
.+...+|.++.+++++++..|+
T Consensus 206 ~~p~~~~gg~~l~~~ad~~l~lrr~~~~k~g~ 237 (349)
T 2zr9_A 206 GSPETTTGGKALKFYASVRLDVRRIETLKDGT 237 (349)
T ss_dssp ----CCSSHHHHHHHCSEEEEEEEEEEECSSS
T ss_pred CCCcccCCchHhhhccceEEEEEEeeeeecCc
Confidence 2557899999998877665554
No 156
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=98.67 E-value=6.6e-10 Score=114.41 Aligned_cols=71 Identities=14% Similarity=0.229 Sum_probs=55.0
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEE---CCEecCcccccceeEEEccCCCCCCCCCHHHHHHHHHHcc
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTL---NGEVLESKLLKIISAYVMQDDLLFPMLTVEETLMFAAEFR 73 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i---~g~~~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~ 73 (592)
+||+||||||||||+++|+|++...+.+|+|.+ +|...... .++.++++ |+..+++.+|+.+++.+...++
T Consensus 83 igI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi~~d~~~~~~~-~~~~~~~v-q~~~~~~~~~~~~~~~~~~~l~ 156 (308)
T 1sq5_A 83 ISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGFLHPNQ-VLKERGLM-KKKGFPESYDMHRLVKFVSDLK 156 (308)
T ss_dssp EEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGBCCHH-HHHHHTCT-TCTTSGGGBCHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEEEecCCccCcHH-HHHhCCEe-ecCCCCCCccHHHHHHHHHHHh
Confidence 589999999999999999998751123599999 88765432 23446788 8777888999999998876654
No 157
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=98.56 E-value=3.4e-08 Score=94.17 Aligned_cols=37 Identities=22% Similarity=0.154 Sum_probs=32.7
Q ss_pred HHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 048028 120 VSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVNVLQRIA 158 (592)
Q Consensus 120 v~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~la 158 (592)
...|++++.+|+++++| ||++|.....++++.|.+..
T Consensus 130 ~~~a~~l~~~~~~~~~d--~Sal~~~~i~~l~~~l~~~~ 166 (199)
T 2f9l_A 130 TDEARAFAEKNNLSFIE--TSALDSTNVEEAFKNILTEI 166 (199)
T ss_dssp HHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCeEEE--EeCCCCCCHHHHHHHHHHHH
Confidence 45689999999999999 99999999999998887754
No 158
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=98.55 E-value=1.1e-07 Score=97.17 Aligned_cols=108 Identities=19% Similarity=0.123 Sum_probs=73.6
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCcccccceeEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCH
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLESKLLKIISAYVMQDDLLFPMLTVEETLMFAAEFRLPRSVTK 80 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~ 80 (592)
++++|+||+||||++..|++...+. .|+|.+.+.+...... + +.+
T Consensus 101 i~i~g~~G~GKTT~~~~la~~~~~~--~~~v~l~~~d~~~~~~------------------~-~ql-------------- 145 (295)
T 1ls1_A 101 WFLVGLQGSGKTTTAAKLALYYKGK--GRRPLLVAADTQRPAA------------------R-EQL-------------- 145 (295)
T ss_dssp EEEECCTTTTHHHHHHHHHHHHHHT--TCCEEEEECCSSCHHH------------------H-HHH--------------
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEecCCcccHhH------------------H-HHH--------------
Confidence 4789999999999999999997643 4788887765432100 0 111
Q ss_pred HHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCC-CCCCCHHHHHHHHHHHHHH
Q 048028 81 TKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEP-TSGLDSTSAFMVVNVLQRI 157 (592)
Q Consensus 81 ~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEP-tsgLD~~~~~~i~~~l~~l 157 (592)
..+.+..|+..... + .+-+..+.+|.+|+.+...+++++++||| ++++|.....++.+..+.+
T Consensus 146 -------~~~~~~~~l~~~~~---~----~~~~p~~l~~~~l~~~~~~~~D~viiDtpp~~~~d~~~~~~l~~~~~~~ 209 (295)
T 1ls1_A 146 -------RLLGEKVGVPVLEV---M----DGESPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKEVL 209 (295)
T ss_dssp -------HHHHHHHTCCEEEC---C----TTCCHHHHHHHHHHHHHHHTCCEEEEECCCCSSCCHHHHHHHHHHHHHH
T ss_pred -------HHhcccCCeEEEEc---C----CCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccccHHHHHHHHHHhhhc
Confidence 01223345543211 0 11344566788999988899999999999 9999998888877776665
No 159
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=98.52 E-value=1.2e-10 Score=117.81 Aligned_cols=110 Identities=15% Similarity=0.207 Sum_probs=71.1
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCcc---cccceeEEEccCCC-CCCCCCHHHHHHHHHHccCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLESK---LLKIISAYVMQDDL-LFPMLTVEETLMFAAEFRLPR 76 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~~---~~~~~~~yv~Q~~~-l~~~lTV~E~l~f~~~l~~~~ 76 (592)
++|+||||+|||||+++|++... .|.|.++|.++... ..++.+++++|+.. ..+.+++.|++......+...
T Consensus 76 vll~Gp~GtGKTtl~~~i~~~~~----~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~ 151 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAGEAR----VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSG 151 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTT----CCEEEEEHHHHHHSTTTHHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC----
T ss_pred EEEECCCcChHHHHHHHHHHHcC----CCEEEecHHHHHHHHhhHHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccc
Confidence 47999999999999999999864 48899988765321 12233567777743 567778888885433211100
Q ss_pred -CCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcE
Q 048028 77 -SVTKTKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPIL 132 (592)
Q Consensus 77 -~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~l 132 (592)
.....+..+.+.+++. .|||||+||+.|++++..+|++
T Consensus 152 ~~~~~~~~~~~~~~ll~------------------~lsgg~~~~~~i~~a~t~~p~~ 190 (278)
T 1iy2_A 152 VGGGNDEREQTLNQLLV------------------EMDGFEKDTAIVVMAATNRPDI 190 (278)
T ss_dssp ----CHHHHHHHHHHHH------------------HHTTCCTTCCEEEEEEESCTTS
T ss_pred cCCcchHHHHHHHHHHH------------------HHhCCCCCCCEEEEEecCCchh
Confidence 0011222333333332 3899999999999999999876
No 160
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=98.50 E-value=8.9e-08 Score=100.74 Aligned_cols=148 Identities=16% Similarity=0.207 Sum_probs=87.9
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCC---------CCceeEEEECCEecCcccccceeEEEccCCCCCCCCCHH---HHHHH
Q 048028 1 MAILGASGAGKTTLMDALAGRIEK---------ESLQGAVTLNGEVLESKLLKIISAYVMQDDLLFPMLTVE---ETLMF 68 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~---------~~~~G~I~i~g~~~~~~~~~~~~~yv~Q~~~l~~~lTV~---E~l~f 68 (592)
++|+|++|||||||+|.|+|.... +..+|.|.++|.++. .....|++.+.+. ..|. .++..
T Consensus 182 V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~---l~DT~G~i~~lp~----~lve~f~~tl~~ 254 (364)
T 2qtf_A 182 IGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIM---LVDTVGFIRGIPP----QIVDAFFVTLSE 254 (364)
T ss_dssp EEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEE---EEECCCBCSSCCG----GGHHHHHHHHHG
T ss_pred EEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEE---EEeCCCchhcCCH----HHHHHHHHHHHH
Confidence 479999999999999999998641 135689999886542 2223455444221 1121 11111
Q ss_pred HHH--c--c-CCCCCCH---HHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHH----HHH-hhCCcEEEE
Q 048028 69 AAE--F--R-LPRSVTK---TKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIG----IHI-IHDPILLFL 135 (592)
Q Consensus 69 ~~~--l--~-~~~~~~~---~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia----~~L-~~~p~lllL 135 (592)
... + . ....... .+..+.+.++++.+++.+..--.|++ +..-+|+|+++|+.++ +++ ..+|++
T Consensus 255 ~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~N-K~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~--- 330 (364)
T 2qtf_A 255 AKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLN-KIDKINGDLYKKLDLVEKLSKELYSPIFDV--- 330 (364)
T ss_dssp GGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEE-CGGGCCSCHHHHHHHHHHHHHHHCSCEEEE---
T ss_pred HHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEE-CCCCCCchHHHHHHHHHHHHHHhcCCCCcE---
Confidence 000 0 0 0001111 22334567888888876544222232 2334788888988887 454 334454
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHc
Q 048028 136 DEPTSGLDSTSAFMVVNVLQRIAKS 160 (592)
Q Consensus 136 DEPtsgLD~~~~~~i~~~l~~la~~ 160 (592)
+|+|++|.....++.+.|.++...
T Consensus 331 -~~~SA~~g~gi~~L~~~I~~~l~~ 354 (364)
T 2qtf_A 331 -IPISALKRTNLELLRDKIYQLATQ 354 (364)
T ss_dssp -EECBTTTTBSHHHHHHHHHHHHHH
T ss_pred -EEEECCCCcCHHHHHHHHHHHhcc
Confidence 899999999999999999887653
No 161
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=98.48 E-value=1.8e-10 Score=114.82 Aligned_cols=114 Identities=17% Similarity=0.221 Sum_probs=72.1
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCcc---cccceeEEEccCC-CCCCCCCHHHHHHHHHHccCC-
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLESK---LLKIISAYVMQDD-LLFPMLTVEETLMFAAEFRLP- 75 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~~---~~~~~~~yv~Q~~-~l~~~lTV~E~l~f~~~l~~~- 75 (592)
++|.||||+|||||+++|++... .|.+.++|.++... ..++.+++++|+. ...+.+++.|++......+..
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~~~----~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~ 127 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGEAR----VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSG 127 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTT----CCEEEEEHHHHHHSCTTHHHHHHHHHHHHHTTSSSEEEEEETHHHHHC-----
T ss_pred EEEECCCCCCHHHHHHHHHHHhC----CCEEEeeHHHHHHHHhhHHHHHHHHHHHHHHhcCCeEEEehhhhhhhcccCcc
Confidence 47999999999999999999864 48899988765321 1123345677764 356677777877543221110
Q ss_pred CCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCC
Q 048028 76 RSVTKTKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEP 138 (592)
Q Consensus 76 ~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEP 138 (592)
......+..+.+.+++. .|||||+||+.|++++..+|++ +|++
T Consensus 128 ~~~~~~~~~~~~~~ll~------------------~l~g~~~~~~~i~~a~t~~p~~--ld~~ 170 (254)
T 1ixz_A 128 VGGGNDEREQTLNQLLV------------------EMDGFEKDTAIVVMAATNRPDI--LDPA 170 (254)
T ss_dssp ----CHHHHHHHHHHHH------------------HHHTCCTTCCEEEEEEESCGGG--SCGG
T ss_pred ccccchHHHHHHHHHHH------------------HHhCCCCCCCEEEEEccCCchh--CCHH
Confidence 00011222333444432 3889999999999999999986 4543
No 162
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=98.41 E-value=1.4e-08 Score=114.05 Aligned_cols=143 Identities=16% Similarity=0.136 Sum_probs=82.5
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCcccccceeEEEccCC----------------------CCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLESKLLKIISAYVMQDD----------------------LLFP 58 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~~~~~~~~~yv~Q~~----------------------~l~~ 58 (592)
++|+||||+|||||+++|++..++. ..|.+.+++.+.+. ....++++++.. ..+.
T Consensus 63 vll~Gp~GtGKTtlar~ia~~l~~~-~~~~~~~~~~~~~~--~~p~i~~~p~g~~~~~~e~~~~~~~~~~~~r~~~~~~~ 139 (604)
T 3k1j_A 63 VLLIGEPGTGKSMLGQAMAELLPTE-TLEDILVFPNPEDE--NMPRIKTVPACQGRRIVEKYREKAKSQESVKSSNMRLK 139 (604)
T ss_dssp EEEECCTTSSHHHHHHHHHHTSCCS-SCEEEEEECCTTCT--TSCEEEEEETTHHHHHHHHHHHHHHHHTCC--------
T ss_pred EEEEeCCCCCHHHHHHHHhccCCcc-cCCeEEEeCCcccc--cCCcEEEEecchHHHHHHHHHHhhccchhhhhhccccc
Confidence 4799999999999999999998753 34888888876643 234578887743 1111
Q ss_pred CCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCC
Q 048028 59 MLTVEETLMFAAEFRLPRSVTKTKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEP 138 (592)
Q Consensus 59 ~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEP 138 (592)
.+++.+|+.....-..+...-. +...... +.+|.-+... ....++|+|++|++..+.....++.+|+|||.
T Consensus 140 ~~~~~~nl~v~~~~~~~~~~v~-~~~~~~~---~L~G~~~~~~-----~~~g~~~~g~~~~i~~g~~~~a~~gvL~LDEi 210 (604)
T 3k1j_A 140 STVLVPKLLVDNCGRTKAPFID-ATGAHAG---ALLGDVRHDP-----FQSGGLGTPAHERVEPGMIHRAHKGVLFIDEI 210 (604)
T ss_dssp ---CCCEEEECCTTCSSCCEEE-CTTCCHH---HHHCEECCCC-----C----CCCCGGGGEECCHHHHTTTSEEEETTG
T ss_pred ccccccceeeccccCCCCCEEE-cCCCCHH---hcCceEEech-----hhcCCccccccccccCceeeecCCCEEEEech
Confidence 1222222110000000000000 0000011 1122111110 11246999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHH
Q 048028 139 TSGLDSTSAFMVVNVLQR 156 (592)
Q Consensus 139 tsgLD~~~~~~i~~~l~~ 156 (592)
.. |++.....+.+.|++
T Consensus 211 ~~-l~~~~q~~Ll~~Le~ 227 (604)
T 3k1j_A 211 AT-LSLKMQQSLLTAMQE 227 (604)
T ss_dssp GG-SCHHHHHHHHHHHHH
T ss_pred hh-CCHHHHHHHHHHHHc
Confidence 88 898888877777764
No 163
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=98.36 E-value=1.8e-08 Score=96.38 Aligned_cols=60 Identities=23% Similarity=0.271 Sum_probs=42.7
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCcc---cccceeEEEccCCCCCCCCCHHHHH
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLESK---LLKIISAYVMQDDLLFPMLTVEETL 66 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~~---~~~~~~~yv~Q~~~l~~~lTV~E~l 66 (592)
++|+||||||||||+++|+|+.+ .+.+++...+.. ..++.++|++|++..++.+++.+++
T Consensus 10 i~l~Gp~GsGKSTl~~~L~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (205)
T 3tr0_A 10 FIISAPSGAGKTSLVRALVKALA------EIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKEGAF 72 (205)
T ss_dssp EEEECCTTSCHHHHHHHHHHHSS------SEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTCE
T ss_pred EEEECcCCCCHHHHHHHHHhhCC------CeEEeceeccCCCchhHhcCceEEeccHHHHHHHHhcCcE
Confidence 48999999999999999999853 356666554432 1244578999987766665555543
No 164
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=98.32 E-value=1e-10 Score=115.09 Aligned_cols=69 Identities=10% Similarity=0.022 Sum_probs=31.5
Q ss_pred hhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-----CCEEEEEecCChhHHHhhhceEEEecCCeEeeecCh
Q 048028 127 IHDPILLFLDEPTSGLDSTSAFMVVNVLQRIAKS-----GSIVIMSIHQPSYRILSLLDRLIILSHGQSVYNETP 196 (592)
Q Consensus 127 ~~~p~lllLDEPtsgLD~~~~~~i~~~l~~la~~-----g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~v~~g~~ 196 (592)
+..|+...+||++.+.|..+...+.+.|++...+ ....+++.|+++ ++.+..++++-..+++..+.++.
T Consensus 146 v~~~~~~~l~~Rl~~R~~~~~~~i~~rl~~~~~~~~~~~~~d~vI~n~~~e-~~~~~l~~~i~~~~~~~~~~~~~ 219 (231)
T 3lnc_A 146 IMPPSMEELRRRLCGRRADDSEVVEARLKGAAFEISHCEAYDYVIVNEDIE-ETADRISNILRAEQMKTCRQVGL 219 (231)
T ss_dssp EECSCHHHHHHC--------------CHHHHHHHHTTGGGSSEEEECSSHH-HHHHHHHHHHHHHHTBGGGEESH
T ss_pred EECCcHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhhcCCeEEEECcCHH-HHHHHHHHHHHHHhhccccCcch
Confidence 4566777788999999888887777777654431 234566666654 46666666655445554444433
No 165
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=98.31 E-value=4.5e-08 Score=96.12 Aligned_cols=50 Identities=26% Similarity=0.339 Sum_probs=33.1
Q ss_pred EEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCcc-----------cccceeEEEccC
Q 048028 2 AILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLESK-----------LLKIISAYVMQD 53 (592)
Q Consensus 2 aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~~-----------~~~~~~~yv~Q~ 53 (592)
+|+|||||||||||++|+|.+.+. +|+|.++|.++... ..+..++|++|+
T Consensus 31 ~i~GpnGsGKSTll~~i~g~~~~~--~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~~~ 91 (227)
T 1qhl_A 31 TLSGGNGAGKSTTMAAFVTALIPD--LTLLHFRNTTEAGATSGSRDKGLHGKLKAGVCYSMLD 91 (227)
T ss_dssp HHHSCCSHHHHHHHHHHHHHHSCC--TTTC------------------CGGGBCSSEEEEEEE
T ss_pred EEECCCCCCHHHHHHHHhcccccC--CCeEEECCEEcccCCccccccchhhHhhcCcEEEEEe
Confidence 689999999999999999998864 59999999876221 124567899884
No 166
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=98.30 E-value=2.1e-07 Score=97.24 Aligned_cols=62 Identities=19% Similarity=0.149 Sum_probs=34.7
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEE-EECCEecCcccccceeEEEccCCCCCCCCCHHH
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAV-TLNGEVLESKLLKIISAYVMQDDLLFPMLTVEE 64 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I-~i~g~~~~~~~~~~~~~yv~Q~~~l~~~lTV~E 64 (592)
+.|.||||+|||||+..+++...+. .|.+ ++++.........+.+++.+|+..+....++.+
T Consensus 64 ~~I~GppGsGKSTLal~la~~~~~~--gg~VlyId~E~s~~~~ra~rlgv~~~~l~i~~~~~~e~ 126 (356)
T 3hr8_A 64 VEIFGQESSGKTTLALHAIAEAQKM--GGVAAFIDAEHALDPVYAKNLGVDLKSLLISQPDHGEQ 126 (356)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHT--TCCEEEEESSCCCCHHHHHHHTCCGGGCEEECCSSHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhc--CCeEEEEecccccchHHHHHcCCchhhhhhhhccCHHH
Confidence 3689999999999999999875422 2443 555543322222233444444433333334433
No 167
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=98.30 E-value=1e-06 Score=95.69 Aligned_cols=59 Identities=25% Similarity=0.410 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEeCC----------CCCCCHHHHHHHHHHHHHHH----HcCCEEEEEecCCh
Q 048028 114 GGERRRVSIGIHIIHDPILLFLDEP----------TSGLDSTSAFMVVNVLQRIA----KSGSIVIMSIHQPS 172 (592)
Q Consensus 114 gGerqRv~ia~~L~~~p~lllLDEP----------tsgLD~~~~~~i~~~l~~la----~~g~tvi~~~H~~~ 172 (592)
|++++|-.++++....|.+|++||+ +.|.|......+.+++..+- +.+..||.++|+|+
T Consensus 93 ~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~ 165 (476)
T 2ce7_A 93 GAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPD 165 (476)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGG
T ss_pred cHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChh
Confidence 5678888899999999999999999 44777777777777777764 24678899999985
No 168
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=98.16 E-value=2e-06 Score=99.10 Aligned_cols=76 Identities=16% Similarity=0.175 Sum_probs=59.3
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCC-CCCHHHHHHHHHHHHHHHHcCCEEEEE-ecCChhHHHhhhceEEEe
Q 048028 109 HRGVSGGERRRVSIGIHIIHDPILLFLDEPTS-GLDSTSAFMVVNVLQRIAKSGSIVIMS-IHQPSYRILSLLDRLIIL 185 (592)
Q Consensus 109 ~~~LSgGerqRv~ia~~L~~~p~lllLDEPts-gLD~~~~~~i~~~l~~la~~g~tvi~~-~H~~~~~i~~~~D~v~ll 185 (592)
+.-+|.|+.+|..++..++.+++++++|||.. +||......+++.+.+...+.++|+++ ||++. .+.+++++.-++
T Consensus 188 I~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~~~~iIl~SAT~~~~-~l~~~~~~~~vi 265 (773)
T 2xau_A 188 LKYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSATLDAE-KFQRYFNDAPLL 265 (773)
T ss_dssp EEEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCTTCEEEEEESCSCCH-HHHHHTTSCCEE
T ss_pred EEEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCCCceEEEEeccccHH-HHHHHhcCCCcc
Confidence 34589999999999999999999999999996 999887777776666554445677775 88775 577777754333
No 169
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=98.15 E-value=3.6e-06 Score=88.13 Aligned_cols=61 Identities=10% Similarity=0.148 Sum_probs=48.0
Q ss_pred CCCCHHHHHHHHHHHHHhhCCcEEEEe-CCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEe--cCCh
Q 048028 110 RGVSGGERRRVSIGIHIIHDPILLFLD-EPTSGLDSTSAFMVVNVLQRIAKSGSIVIMSI--HQPS 172 (592)
Q Consensus 110 ~~LSgGerqRv~ia~~L~~~p~lllLD-EPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~--H~~~ 172 (592)
..+|+||+|++. +.+...++-++++| +|.+|+|......+++.+++... +..+|++. ||..
T Consensus 230 ~~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~-~~piilV~NK~Dl~ 293 (357)
T 2e87_A 230 SERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK-DLPFLVVINKIDVA 293 (357)
T ss_dssp TTSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT-TSCEEEEECCTTTC
T ss_pred hhhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC-CCCEEEEEECcccC
Confidence 358999998876 55556778889999 99999999988888877776543 67777777 7754
No 170
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.15 E-value=6.4e-07 Score=96.62 Aligned_cols=70 Identities=14% Similarity=0.264 Sum_probs=51.5
Q ss_pred hCCcEEEEeCCCCCCCH-HHHHHHHHHHHHHHHcCCEEEEEecCChhHHHhhhceEEE-ecCCeEeeecChh
Q 048028 128 HDPILLFLDEPTSGLDS-TSAFMVVNVLQRIAKSGSIVIMSIHQPSYRILSLLDRLII-LSHGQSVYNETPS 197 (592)
Q Consensus 128 ~~p~lllLDEPtsgLD~-~~~~~i~~~l~~la~~g~tvi~~~H~~~~~i~~~~D~v~l-l~~G~~v~~g~~~ 197 (592)
.+|++|++||+..-.+. .++..+...+..+.+.|+.+|+++|.|..++..+.+++.- +..|.++..++++
T Consensus 193 ~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p~ 264 (440)
T 2z4s_A 193 KKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPD 264 (440)
T ss_dssp TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCCC
T ss_pred CCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCCC
Confidence 38999999999887764 6778889999998878899999999865433233344433 4567777776664
No 171
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=98.14 E-value=2.3e-07 Score=88.96 Aligned_cols=126 Identities=13% Similarity=0.234 Sum_probs=69.7
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCcccccceeEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCH
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLESKLLKIISAYVMQDDLLFPMLTVEETLMFAAEFRLPRSVTK 80 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~ 80 (592)
++|+|||||||||+.+.|+++ |...+++-.+ .+... + +.
T Consensus 5 i~l~G~~GsGKST~~~~La~l-------g~~~id~d~~----~~~~~----~-----~~--------------------- 43 (206)
T 1jjv_A 5 VGLTGGIGSGKTTIANLFTDL-------GVPLVDADVV----AREVV----A-----KD--------------------- 43 (206)
T ss_dssp EEEECSTTSCHHHHHHHHHTT-------TCCEEEHHHH----HHHTT----C-----SS---------------------
T ss_pred EEEECCCCCCHHHHHHHHHHC-------CCcccchHHH----HHHHc----c-----CC---------------------
Confidence 489999999999999999983 3333332111 01000 0 00
Q ss_pred HHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc
Q 048028 81 TKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVNVLQRIAKS 160 (592)
Q Consensus 81 ~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~la~~ 160 (592)
...+.++.+.+|.... .+.|+.+|..++.....+|+.+.++ .+.++|.....+.+.+++. .
T Consensus 44 ---~~~~~~i~~~~g~~~~------------~~~g~~~r~~l~~~~f~~~~~~~~l--~~~~~p~v~~~~~~~~~~~--~ 104 (206)
T 1jjv_A 44 ---SPLLSKIVEHFGAQIL------------TEQGELNRAALRERVFNHDEDKLWL--NNLLHPAIRERMKQKLAEQ--T 104 (206)
T ss_dssp ---CHHHHHHHHHHCTTCC------------------CHHHHHHHHHTCHHHHHHH--HHHHHHHHHHHHHHHHHTC--C
T ss_pred ---hHHHHHHHHHhCHHHh------------ccCccccHHHHHHHHhCCHHHHHHH--HhccCHHHHHHHHHHHHhc--C
Confidence 0124455566664321 3678888999988888887654332 3345555555554444322 3
Q ss_pred CCEEEEEecCChhH-HHhhhceEEEec
Q 048028 161 GSIVIMSIHQPSYR-ILSLLDRLIILS 186 (592)
Q Consensus 161 g~tvi~~~H~~~~~-i~~~~D~v~ll~ 186 (592)
+.++|+.+|..... ....||.+++++
T Consensus 105 ~~~vv~~~~~l~e~~~~~~~d~vi~l~ 131 (206)
T 1jjv_A 105 APYTLFVVPLLIENKLTALCDRILVVD 131 (206)
T ss_dssp SSEEEEECTTTTTTTCGGGCSEEEEEE
T ss_pred CCEEEEEechhhhcCcHhhCCEEEEEE
Confidence 56788888876421 246788888774
No 172
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=98.08 E-value=4.5e-07 Score=98.29 Aligned_cols=37 Identities=19% Similarity=0.321 Sum_probs=33.2
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecC
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLE 39 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~ 39 (592)
++|+|||||||||||++|+|+.++. +|+|.++|+++.
T Consensus 32 ~~liG~nGsGKSTLl~~l~Gl~~p~--~G~I~~~g~~~~ 68 (483)
T 3euj_A 32 TTLSGGNGAGKSTTMAGFVTALIPD--LTLLNFRNTTEA 68 (483)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHCCC--TTTCCCCCTTSC
T ss_pred EEEECCCCCcHHHHHHHHhcCCCCC--CCEEEECCEEcc
Confidence 5899999999999999999998764 599999998775
No 173
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=98.08 E-value=1.1e-07 Score=91.09 Aligned_cols=51 Identities=22% Similarity=0.407 Sum_probs=36.3
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCcc--cccceeEEEccCCCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLESK--LLKIISAYVMQDDLLF 57 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~~--~~~~~~~yv~Q~~~l~ 57 (592)
++|+||||||||||+++|++.+ |.+.++|.++... ..+...++++|+....
T Consensus 32 i~l~G~~GsGKSTl~~~L~~~~------g~~~i~~d~~~~~~~~~~~~~g~~~~~~~~~ 84 (200)
T 4eun_A 32 VVVMGVSGSGKTTIAHGVADET------GLEFAEADAFHSPENIATMQRGIPLTDEDRW 84 (200)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH------CCEEEEGGGGSCHHHHHHHHTTCCCCHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHhh------CCeEEcccccccHHHHHHHhcCCCCCCcccc
Confidence 4799999999999999999874 7888988766431 1112346777754433
No 174
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=97.94 E-value=1.5e-05 Score=83.44 Aligned_cols=44 Identities=14% Similarity=0.080 Sum_probs=35.9
Q ss_pred hCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH---cCCEEEEEecCCh
Q 048028 128 HDPILLFLDEPTSGLDSTSAFMVVNVLQRIAK---SGSIVIMSIHQPS 172 (592)
Q Consensus 128 ~~p~lllLDEPtsgLD~~~~~~i~~~l~~la~---~g~tvi~~~H~~~ 172 (592)
.+|.++++||+... |......+.+.++++.. .+.++|+++|++.
T Consensus 124 ~~~~vlilDE~~~l-~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~ 170 (389)
T 1fnn_A 124 DLYMFLVLDDAFNL-APDILSTFIRLGQEADKLGAFRIALVIVGHNDA 170 (389)
T ss_dssp TCCEEEEEETGGGS-CHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTH
T ss_pred CCeEEEEEECcccc-chHHHHHHHHHHHhCCCCCcCCEEEEEEECCch
Confidence 45889999999876 88888888888877665 4678999999985
No 175
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.84 E-value=2.9e-06 Score=80.19 Aligned_cols=23 Identities=39% Similarity=0.622 Sum_probs=21.4
Q ss_pred CEEECCCCCcHHHHHHHHhCCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRIE 23 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~ 23 (592)
++|+||||||||||+++|+|+.+
T Consensus 4 i~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 4 IVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp EEEESSSSSSHHHHHHHHHHHCG
T ss_pred EEEECCCCCCHHHHHHHHHhhCC
Confidence 48999999999999999999975
No 176
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.79 E-value=0.00011 Score=74.31 Aligned_cols=73 Identities=15% Similarity=0.236 Sum_probs=44.2
Q ss_pred CHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHH----------HHHHHHHHHHHHHH----cCCEEEEEecCCh---hHH
Q 048028 113 SGGERRRVSIGIHIIHDPILLFLDEPTSGLDST----------SAFMVVNVLQRIAK----SGSIVIMSIHQPS---YRI 175 (592)
Q Consensus 113 SgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~----------~~~~i~~~l~~la~----~g~tvi~~~H~~~---~~i 175 (592)
+++++.|..++.+...+|.+|++||+.+-++.. ....++..+..... .+..+|.++++|. ..+
T Consensus 97 ~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~l~~~l 176 (297)
T 3b9p_A 97 DGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAA 176 (297)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGGGBCHHH
T ss_pred hHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChhhCCHHH
Confidence 356677777777778899999999998776532 22233444443321 1345777888763 334
Q ss_pred HhhhceEEEe
Q 048028 176 LSLLDRLIIL 185 (592)
Q Consensus 176 ~~~~D~v~ll 185 (592)
.+.||+.+.+
T Consensus 177 ~~R~~~~i~~ 186 (297)
T 3b9p_A 177 LRRFTKRVYV 186 (297)
T ss_dssp HHHCCEEEEC
T ss_pred HhhCCeEEEe
Confidence 4556655444
No 177
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=97.77 E-value=8.8e-08 Score=101.03 Aligned_cols=126 Identities=17% Similarity=0.137 Sum_probs=67.8
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCcccccceeEEEccCCC-CCCCCCHHHHHHHHHHcc-CCCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLESKLLKIISAYVMQDDL-LFPMLTVEETLMFAAEFR-LPRSV 78 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~~~~~~~~~yv~Q~~~-l~~~lTV~E~l~f~~~l~-~~~~~ 78 (592)
++|.||||||||||+++|+|.. +|++..-+.+ ....+..+++++|... ++++.+....+ .+ ....
T Consensus 172 i~l~G~~GsGKSTl~~~l~~~~-----~g~~~~~~~~--~~~~~~~lg~~~q~~~~l~dd~~~~~~~-----~r~l~~~- 238 (377)
T 1svm_A 172 WLFKGPIDSGKTTLAAALLELC-----GGKALNVNLP--LDRLNFELGVAIDQFLVVFEDVKGTGGE-----SRDLPSG- 238 (377)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH-----CCEEECCSSC--TTTHHHHHGGGTTCSCEEETTCCCSTTT-----TTTCCCC-
T ss_pred EEEECCCCCCHHHHHHHHHhhc-----CCcEEEEecc--chhHHHHHHHhcchhHHHHHHHHHHHHH-----Hhhcccc-
Confidence 4799999999999999999863 3776651111 1111223566777653 33333322211 00 0000
Q ss_pred CHHHHHHHHHHHHHH---cCCcc-cc---cc-----cccCCCCCCCCHHHHHHHHHHHHHhhCCcEEE-EeCCCC
Q 048028 79 TKTKKQERVEALINQ---LGLRS-AA---KT-----FIGDERHRGVSGGERRRVSIGIHIIHDPILLF-LDEPTS 140 (592)
Q Consensus 79 ~~~~~~~~v~~~l~~---lgL~~-~~---~~-----~vg~~~~~~LSgGerqRv~ia~~L~~~p~lll-LDEPts 140 (592)
........+.+.++- ..+.. .. +. .+ +.....+++|+++|+..+.+++.+|++++ ||+|+.
T Consensus 239 ~~~~~~~~l~~~ldG~v~v~~~tn~~~~l~alf~pg~l-d~~~~~l~~~~~~rl~~~~~l~~~pDLliyLd~~~~ 312 (377)
T 1svm_A 239 QGINNLDNLRDYLDGSVKVNLEKKHLNKRTQIFPPGIV-TMNEYSVPKTLQARFVKQIDFRPKDYLKHCLERSEF 312 (377)
T ss_dssp SHHHHHHTTHHHHHCSSCEEECCSSSCCEEECCCCEEE-EECSCCCCHHHHTTEEEEEECCCCHHHHHHHHTCTH
T ss_pred CcchHHHHHHHHhcCCCeEeeccCchhhHHHhhcCccc-ChhHHhhcHHHHHHHhhhhccCCCCCeEEEEeCCHH
Confidence 000011223333320 00110 00 00 01 12334589999999998888888999887 999987
No 178
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=97.77 E-value=2.8e-05 Score=80.67 Aligned_cols=53 Identities=8% Similarity=0.060 Sum_probs=42.2
Q ss_pred CCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc--CCEEEEEe
Q 048028 111 GVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVNVLQRIAKS--GSIVIMSI 168 (592)
Q Consensus 111 ~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~la~~--g~tvi~~~ 168 (592)
.||.+|.+|+..|...+.++++++.|+|... ..++...++++.++ |..+|++-
T Consensus 109 ~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~s-----i~~i~~~ir~l~~~~gg~~lIVID 163 (338)
T 4a1f_A 109 RLDDDQWENLAKCFDHLSQKKLFFYDKSYVR-----IEQIRLQLRKLKSQHKELGIAFID 163 (338)
T ss_dssp CCCHHHHHHHHHHHHHHHHSCEEEECCTTCC-----HHHHHHHHHHHHHHCTTEEEEEEE
T ss_pred CCCHHHHHHHHHHHHHHhcCCeEEeCCCCCc-----HHHHHHHHHHHHHhcCCCCEEEEe
Confidence 4999999999999999999999999998654 34677777777654 45666654
No 179
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=97.74 E-value=8e-07 Score=98.21 Aligned_cols=36 Identities=47% Similarity=0.730 Sum_probs=29.5
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCcee-EEE-ECCEec
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQG-AVT-LNGEVL 38 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G-~I~-i~g~~~ 38 (592)
++|+|+||||||||+++|+|++.+. +| ++. ++|.++
T Consensus 372 I~LiG~sGSGKSTLar~La~~L~~~--~G~~i~~lDgD~~ 409 (552)
T 3cr8_A 372 VFFTGLSGAGKSTLARALAARLMEM--GGRCVTLLDGDIV 409 (552)
T ss_dssp EEEEESSCHHHHHHHHHHHHHHHTT--CSSCEEEESSHHH
T ss_pred EEEECCCCChHHHHHHHHHHhhccc--CCceEEEECCcHH
Confidence 4799999999999999999998753 35 674 888654
No 180
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=97.74 E-value=1.9e-07 Score=101.96 Aligned_cols=116 Identities=16% Similarity=0.208 Sum_probs=72.3
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCccc---ccceeEEEccCCC-CCCCCCHHHHHHHHHHccCC-
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLESKL---LKIISAYVMQDDL-LFPMLTVEETLMFAAEFRLP- 75 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~~~---~~~~~~yv~Q~~~-l~~~lTV~E~l~f~~~l~~~- 75 (592)
+.|.||||+|||||+++|++... .+.+.++|.++.... ..+.+..++|+.. ..|.+.+.|++.....-+..
T Consensus 67 vLL~GppGtGKTtLaraIa~~~~----~~~i~i~g~~~~~~~~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~ 142 (499)
T 2dhr_A 67 VLLVGPPGVGKTHLARAVAGEAR----VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSG 142 (499)
T ss_dssp EEEECSSSSSHHHHHHHHHHHTT----CCEEEEEGGGGTSSCTTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSS
T ss_pred EEEECCCCCCHHHHHHHHHHHhC----CCEEEEehhHHHHhhhhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccC
Confidence 47999999999999999999864 378899887653311 1122345566542 34555555555322111100
Q ss_pred CCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCC
Q 048028 76 RSVTKTKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTS 140 (592)
Q Consensus 76 ~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPts 140 (592)
......+..+.+.+++. .|||||+|+..|+++..++|++ |||+..
T Consensus 143 ~~~~~~e~~~~l~~LL~------------------~Ldg~~~~~~viviAatn~p~~--LD~aLl 187 (499)
T 2dhr_A 143 VGGGNDEREQTLNQLLV------------------EMDGFEKDTAIVVMAATNRPDI--LDPALL 187 (499)
T ss_dssp TTTSSHHHHHHHHHHHH------------------HGGGCCSSCCCEEEECCSCGGG--SCTTTS
T ss_pred cCCCcHHHHHHHHHHHH------------------HhcccccCccEEEEEecCChhh--cCcccc
Confidence 00112333444555553 2778888888889999999987 898875
No 181
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=97.68 E-value=1.6e-05 Score=90.05 Aligned_cols=123 Identities=16% Similarity=0.127 Sum_probs=69.6
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCcc---cccceeEEEccCCCCCCCCCHHHHHHHHHHccCCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLESK---LLKIISAYVMQDDLLFPMLTVEETLMFAAEFRLPRS 77 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~~---~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~~~~ 77 (592)
++|+|++|+|||||++.|++........|+| .+|..+... ..++.+.+..|...+... +++.|
T Consensus 12 i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V-~~g~~~~d~~~~e~~~giti~~~~~~~~~~-~~~~n------------ 77 (665)
T 2dy1_A 12 VALVGHAGSGKTTLTEALLYKTGAKERRGRV-EEGTTTTDYTPEAKLHRTTVRTGVAPLLFR-GHRVF------------ 77 (665)
T ss_dssp EEEEESTTSSHHHHHHHHHHHTTSSSSCCCG-GGTCCSSCCSHHHHHTTSCCSCEEEEEEET-TEEEE------------
T ss_pred EEEECCCCChHHHHHHHHHHhcCCCCcccee-cCCcccccCCHHHHhcCCeEEecceEEeeC-CEEEE------------
Confidence 4899999999999999999765432345777 566544321 122334454444332211 11111
Q ss_pred CCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 048028 78 VTKTKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVNVLQRI 157 (592)
Q Consensus 78 ~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~l 157 (592)
..||. |.. ..+ .......-..+..++++| |+.|+|+.+. +.++.+
T Consensus 78 ---------------------liDTp-G~~---~f~-----~~~~~~l~~ad~~ilVvD-~~~g~~~qt~----~~~~~~ 122 (665)
T 2dy1_A 78 ---------------------LLDAP-GYG---DFV-----GEIRGALEAADAALVAVS-AEAGVQVGTE----RAWTVA 122 (665)
T ss_dssp ---------------------EEECC-CSG---GGH-----HHHHHHHHHCSEEEEEEE-TTTCSCHHHH----HHHHHH
T ss_pred ---------------------EEeCC-Ccc---chH-----HHHHHHHhhcCcEEEEEc-CCcccchhHH----HHHHHH
Confidence 11221 110 011 112222235678889999 9999998766 333444
Q ss_pred HHcCCEEEEEecCCh
Q 048028 158 AKSGSIVIMSIHQPS 172 (592)
Q Consensus 158 a~~g~tvi~~~H~~~ 172 (592)
.+.+..+|+++|..+
T Consensus 123 ~~~~ip~ilv~NKiD 137 (665)
T 2dy1_A 123 ERLGLPRMVVVTKLD 137 (665)
T ss_dssp HHTTCCEEEEEECGG
T ss_pred HHccCCEEEEecCCc
Confidence 445788888888876
No 182
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=97.68 E-value=1.3e-06 Score=89.96 Aligned_cols=23 Identities=26% Similarity=0.420 Sum_probs=21.4
Q ss_pred CEEECCCCCcHHHHHHHHhCCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRIE 23 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~ 23 (592)
+||.||||||||||+++|++++.
T Consensus 95 igI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 95 IGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHhc
Confidence 58999999999999999999876
No 183
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=97.64 E-value=2.9e-06 Score=84.46 Aligned_cols=52 Identities=27% Similarity=0.210 Sum_probs=40.2
Q ss_pred CEEECCCCCcHHHHHHHHh---CCCCCCCceeEEE--------ECCEecCc----ccccceeEEEccCC
Q 048028 1 MAILGASGAGKTTLMDALA---GRIEKESLQGAVT--------LNGEVLES----KLLKIISAYVMQDD 54 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~---g~~~~~~~~G~I~--------i~g~~~~~----~~~~~~~~yv~Q~~ 54 (592)
++|+|||||||||++++|+ |...+ .+|.+. .+|.++.. ...++.+++++|++
T Consensus 30 I~I~G~~GsGKSTl~k~La~~Lg~~~~--d~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 96 (252)
T 4e22_A 30 ITVDGPSGAGKGTLCKALAESLNWRLL--DSGAIYRVLALAALHHQVDISTEEALVPLAAHLDVRFVSQ 96 (252)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTTCEEE--EHHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCEEEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCCcC--CCCceehHhHHHHHHcCCCcccHHHHHHHHHcCCEEEecC
Confidence 4899999999999999999 88653 469998 88887742 23455678888754
No 184
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=97.61 E-value=9e-05 Score=75.58 Aligned_cols=64 Identities=14% Similarity=0.142 Sum_probs=46.6
Q ss_pred CCHHHHHHHHHHHHHh--hCCcEEEEeCCCCCCCHHH-HHHHHHHHHHHHHc-CC--EEEEEecCChhHHHhhhceEE
Q 048028 112 VSGGERRRVSIGIHII--HDPILLFLDEPTSGLDSTS-AFMVVNVLQRIAKS-GS--IVIMSIHQPSYRILSLLDRLI 183 (592)
Q Consensus 112 LSgGerqRv~ia~~L~--~~p~lllLDEPtsgLD~~~-~~~i~~~l~~la~~-g~--tvi~~~H~~~~~i~~~~D~v~ 183 (592)
+|+|++ .+++.+. ..|.++++ +.+|... ...+.+.++++++. |. .+.++.|+-. .+.+++|.+.
T Consensus 101 ~~~~~~---~i~~~l~~~~~P~ilvl----NK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~~g~-~v~~l~~~i~ 170 (301)
T 1ega_A 101 WTPDDE---MVLNKLREGKAPVILAV----NKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETGL-NVDTIAAIVR 170 (301)
T ss_dssp CCHHHH---HHHHHHHSSSSCEEEEE----ESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTTTT-THHHHHHHHH
T ss_pred CCHHHH---HHHHHHHhcCCCEEEEE----ECcccCccHHHHHHHHHHHHHhcCcCceEEEECCCCC-CHHHHHHHHH
Confidence 898887 4566666 68999998 7899876 67788888888764 43 4556677655 4677777664
No 185
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=97.54 E-value=0.00031 Score=73.33 Aligned_cols=57 Identities=11% Similarity=0.078 Sum_probs=39.5
Q ss_pred CCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcC-CEEEEEec
Q 048028 112 VSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVNVLQRIAKSG-SIVIMSIH 169 (592)
Q Consensus 112 LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~la~~g-~tvi~~~H 169 (592)
-++.++++..+++..+.+|+++++.-..+..|..+ ....+.++.+...| .++++.+.
T Consensus 155 ~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~-~~~~~l~~~~~~~~~~~i~V~nK 212 (360)
T 3t34_A 155 SDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT-SDAIKISREVDPSGDRTFGVLTK 212 (360)
T ss_dssp CSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG-CHHHHHHHHSCTTCTTEEEEEEC
T ss_pred chhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC-HHHHHHHHHhcccCCCEEEEEeC
Confidence 56788999999999999999877774334445443 44566777766555 45555554
No 186
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.51 E-value=1.9e-05 Score=75.14 Aligned_cols=24 Identities=25% Similarity=0.382 Sum_probs=21.6
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRIEK 24 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~ 24 (592)
++|+||||||||||+++|++...+
T Consensus 9 i~l~G~~GsGKSTl~~~L~~~~~~ 32 (207)
T 2j41_A 9 IVLSGPSGVGKGTVRKRIFEDPST 32 (207)
T ss_dssp EEEECSTTSCHHHHHHHHHHCTTC
T ss_pred EEEECCCCCCHHHHHHHHHHhhCC
Confidence 479999999999999999999743
No 187
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=97.50 E-value=7.2e-05 Score=69.62 Aligned_cols=21 Identities=38% Similarity=0.827 Sum_probs=19.5
Q ss_pred CEEECCCCCcHHHHHHHHhCC
Q 048028 1 MAILGASGAGKTTLMDALAGR 21 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~ 21 (592)
++|+|++|+|||||++.++|.
T Consensus 10 i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 10 IALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEECSTTSSHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 479999999999999999985
No 188
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.46 E-value=1.7e-05 Score=82.61 Aligned_cols=23 Identities=26% Similarity=0.576 Sum_probs=20.2
Q ss_pred CEEECCCCCcHHHHHHHHhCCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRIE 23 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~ 23 (592)
+.|.||+|+|||||++.+++...
T Consensus 48 vli~G~~G~GKTtl~~~l~~~~~ 70 (386)
T 2qby_A 48 IFIYGLTGTGKTAVVKFVLSKLH 70 (386)
T ss_dssp EEEEECTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 46899999999999999998754
No 189
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=97.45 E-value=2.8e-05 Score=72.67 Aligned_cols=24 Identities=38% Similarity=0.538 Sum_probs=21.2
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRIEK 24 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~ 24 (592)
++|+||||||||||+++|.+.+.+
T Consensus 29 ~~i~G~NGsGKStll~ai~~~l~~ 52 (182)
T 3kta_A 29 TAIVGANGSGKSNIGDAILFVLGG 52 (182)
T ss_dssp EEEEECTTSSHHHHHHHHHHHTTC
T ss_pred EEEECCCCCCHHHHHHHHHHHHcC
Confidence 379999999999999999987653
No 190
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.45 E-value=4.1e-06 Score=77.93 Aligned_cols=32 Identities=31% Similarity=0.638 Sum_probs=26.7
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEec
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVL 38 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~ 38 (592)
++|+|||||||||+++.|++.+ |.+.+++.++
T Consensus 11 i~l~G~~GsGKSTl~~~l~~~~------g~~~i~~d~~ 42 (175)
T 1knq_A 11 YVLMGVSGSGKSAVASEVAHQL------HAAFLDGDFL 42 (175)
T ss_dssp EEEECSTTSCHHHHHHHHHHHH------TCEEEEGGGG
T ss_pred EEEEcCCCCCHHHHHHHHHHhh------CcEEEeCccc
Confidence 4799999999999999999863 6777877654
No 191
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.41 E-value=4e-05 Score=71.88 Aligned_cols=32 Identities=19% Similarity=0.418 Sum_probs=25.0
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEE
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTL 33 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i 33 (592)
++|+||||||||||++.|++..++ ...|.|..
T Consensus 8 i~i~GpsGsGKSTL~~~L~~~~~~-~~~~~i~~ 39 (180)
T 1kgd_A 8 LVLLGAHGVGRRHIKNTLITKHPD-RFAYPIPH 39 (180)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCTT-TEECCCCE
T ss_pred EEEECCCCCCHHHHHHHHHhhCCc-cEEEeeec
Confidence 479999999999999999998642 23455544
No 192
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=97.35 E-value=3.3e-05 Score=75.47 Aligned_cols=32 Identities=28% Similarity=0.414 Sum_probs=27.9
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEec
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVL 38 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~ 38 (592)
++|.|+||||||||+++|+|. .|+|.+++++.
T Consensus 23 i~i~G~~GsGKSTl~~~L~~~------~g~v~~~~~~~ 54 (230)
T 2vp4_A 23 VLIEGNIGSGKTTYLNHFEKY------KNDICLLTEPV 54 (230)
T ss_dssp EEEECSTTSCHHHHHHTTGGG------TTTEEEECCTH
T ss_pred EEEECCCCCCHHHHHHHHHhc------cCCeEEEecCH
Confidence 479999999999999999997 27888888765
No 193
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.35 E-value=1.4e-05 Score=76.19 Aligned_cols=36 Identities=33% Similarity=0.521 Sum_probs=29.2
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEE--EECCEecC
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAV--TLNGEVLE 39 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I--~i~g~~~~ 39 (592)
++|+||||||||||.+.|++++. ..|.+ .++|.++.
T Consensus 28 i~l~G~sGsGKSTl~~~La~~l~---~~G~~~~~~d~d~~~ 65 (200)
T 3uie_A 28 IWVTGLSGSGKSTLACALNQMLY---QKGKLCYILDGDNVR 65 (200)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHH---HTTCCEEEEEHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHHH---hcCceEEEecCchhh
Confidence 47999999999999999999875 23776 88876553
No 194
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=97.29 E-value=0.00018 Score=77.29 Aligned_cols=38 Identities=26% Similarity=0.555 Sum_probs=30.1
Q ss_pred CEEECCCCCcHHHHHHHHhCCCC----------CCCceeEEEECCEec
Q 048028 1 MAILGASGAGKTTLMDALAGRIE----------KESLQGAVTLNGEVL 38 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~----------~~~~~G~I~i~g~~~ 38 (592)
++|+|+||+|||||+|.|+|... ....+|.+.++|+++
T Consensus 183 vaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~ 230 (439)
T 1mky_A 183 VAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKY 230 (439)
T ss_dssp EEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEE
T ss_pred EEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEE
Confidence 48999999999999999999853 013468899999764
No 195
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.27 E-value=0.00019 Score=68.06 Aligned_cols=50 Identities=14% Similarity=0.047 Sum_probs=28.5
Q ss_pred hCCcEEEEeCCCC-CCCHHHHHHHH-HHHHHHHHcCCEEEEEecCChhHHHh
Q 048028 128 HDPILLFLDEPTS-GLDSTSAFMVV-NVLQRIAKSGSIVIMSIHQPSYRILS 177 (592)
Q Consensus 128 ~~p~lllLDEPts-gLD~~~~~~i~-~~l~~la~~g~tvi~~~H~~~~~i~~ 177 (592)
.++++|++||+-. .++......++ .++.....++..+|++++.+..++..
T Consensus 114 ~~~~~lilDei~~~~~~~~~~~~ll~~~l~~~~~~~~~~i~tsn~~~~~l~~ 165 (202)
T 2w58_A 114 KKVPVLMLDDLGAEAMSSWVRDDVFGPILQYRMFENLPTFFTSNFDMQQLAH 165 (202)
T ss_dssp HHSSEEEEEEECCC---CCGGGTTHHHHHHHHHHTTCCEEEEESSCHHHHHH
T ss_pred cCCCEEEEcCCCCCcCCHHHHHHHHHHHHHHHHhCCCCEEEEcCCCHHHHHH
Confidence 4678999999932 23333333344 45655545566777777765545544
No 196
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=97.24 E-value=0.0023 Score=62.40 Aligned_cols=43 Identities=12% Similarity=0.196 Sum_probs=28.7
Q ss_pred hCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc--CCEEEEEecC
Q 048028 128 HDPILLFLDEPTSGLDSTSAFMVVNVLQRIAKS--GSIVIMSIHQ 170 (592)
Q Consensus 128 ~~p~lllLDEPtsgLD~~~~~~i~~~l~~la~~--g~tvi~~~H~ 170 (592)
.+|+++++..+.+.++......+..+++.+... ..++|+.+|.
T Consensus 111 ~~~~~~l~v~d~~~~~~~~~~~l~~~~~~~~~~~~~~~iiv~nK~ 155 (239)
T 3lxx_A 111 PGPHALLLVVPLGRYTEEEHKATEKILKMFGERARSFMILIFTRK 155 (239)
T ss_dssp TCCSEEEEEEETTCCSSHHHHHHHHHHHHHHHHHGGGEEEEEECG
T ss_pred CCCcEEEEEeeCCCCCHHHHHHHHHHHHHhhhhccceEEEEEeCC
Confidence 368999999998888886655555544443321 2477777773
No 197
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.21 E-value=0.00043 Score=74.06 Aligned_cols=33 Identities=33% Similarity=0.365 Sum_probs=24.8
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECC
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNG 35 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g 35 (592)
++++||+|+||||++..|++.+... .++|.+-+
T Consensus 100 I~lvG~~GsGKTTt~~kLA~~l~~~--G~kVllv~ 132 (433)
T 3kl4_A 100 IMLVGVQGSGKTTTAGKLAYFYKKR--GYKVGLVA 132 (433)
T ss_dssp EEECCCTTSCHHHHHHHHHHHHHHT--TCCEEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEEe
Confidence 3688999999999999999876532 24555433
No 198
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.21 E-value=0.0011 Score=68.06 Aligned_cols=55 Identities=18% Similarity=0.112 Sum_probs=37.6
Q ss_pred HHHHHHHHHHh---hCCcEEEEeCCCCCCCH--------HH----HHHHHHHHHHHHHc-CCEEEEEecCC
Q 048028 117 RRRVSIGIHII---HDPILLFLDEPTSGLDS--------TS----AFMVVNVLQRIAKS-GSIVIMSIHQP 171 (592)
Q Consensus 117 rqRv~ia~~L~---~~p~lllLDEPtsgLD~--------~~----~~~i~~~l~~la~~-g~tvi~~~H~~ 171 (592)
.+.+..++.++ .+|+++++|+.++-.+. .. ..+++..|++++++ +.+||++.|-.
T Consensus 188 ~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~~g~~~~r~~~~~~~l~~L~~la~~~~~~Vi~~nq~~ 258 (324)
T 2z43_A 188 IAIVDDLQELVSKDPSIKLIVVDSVTSHFRAEYPGRENLAVRQQKLNKHLHQLTRLAEVYDIAVIITNQVM 258 (324)
T ss_dssp HHHHHHHHHHHHHCTTEEEEEETTTTHHHHHHSCTTTSHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEC-
T ss_pred HHHHHHHHHHHHhccCCCEEEEeCcHHHhhhhhcCcccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEccee
Confidence 35677777777 57999999999975532 11 24556666777654 88888887643
No 199
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.19 E-value=0.00036 Score=70.91 Aligned_cols=22 Identities=36% Similarity=0.575 Sum_probs=19.7
Q ss_pred CEEECCCCCcHHHHHHHHhCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRI 22 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~ 22 (592)
+.|.||+|+|||||.++|++..
T Consensus 52 vLL~Gp~GtGKT~la~ala~~~ 73 (301)
T 3cf0_A 52 VLFYGPPGCGKTLLAKAIANEC 73 (301)
T ss_dssp EEEECSSSSSHHHHHHHHHHHT
T ss_pred EEEECCCCcCHHHHHHHHHHHh
Confidence 3689999999999999999874
No 200
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=97.19 E-value=6.9e-05 Score=77.21 Aligned_cols=64 Identities=17% Similarity=0.108 Sum_probs=43.4
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCcc-------cc-----cceeEEE-ccCCCCCCCCCHHHHH
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLESK-------LL-----KIISAYV-MQDDLLFPMLTVEETL 66 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~~-------~~-----~~~~~yv-~Q~~~l~~~lTV~E~l 66 (592)
++|+|+||+||||++..|++.+.+. .|+|.+.+.++.+. .+ +..+.++ +|.....|..++.+++
T Consensus 108 I~ivG~~G~GKTT~~~~LA~~l~~~--g~kVllid~D~~r~~a~~ql~~~~~~~~~~~l~vip~~~~~~~p~~~~~~~l 184 (320)
T 1zu4_A 108 FMLVGVNGTGKTTSLAKMANYYAEL--GYKVLIAAADTFRAGATQQLEEWIKTRLNNKVDLVKANKLNADPASVVFDAI 184 (320)
T ss_dssp EEEESSTTSSHHHHHHHHHHHHHHT--TCCEEEEECCCSCHHHHHHHHHHHTTTSCTTEEEECCSSTTCCHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHC--CCeEEEEeCCCcchhHHHHHHHHHhccccCCceEEeCCCCCCCHHHHHHHHH
Confidence 4789999999999999999987643 48999887766321 12 3456777 6654444433444444
No 201
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.19 E-value=0.0019 Score=66.95 Aligned_cols=54 Identities=13% Similarity=0.070 Sum_probs=36.4
Q ss_pred HHHHHHHHHh----hCCcEEEEeCCCCCCCHH------------HHHHHHHHHHHHHHc-CCEEEEEecCC
Q 048028 118 RRVSIGIHII----HDPILLFLDEPTSGLDST------------SAFMVVNVLQRIAKS-GSIVIMSIHQP 171 (592)
Q Consensus 118 qRv~ia~~L~----~~p~lllLDEPtsgLD~~------------~~~~i~~~l~~la~~-g~tvi~~~H~~ 171 (592)
+.+..++.++ .+++++++|+.++-.+.. ...+++..|++++++ +.+||++.|-.
T Consensus 204 ~ll~~l~~~i~~~~~~~~lvVIDsl~~l~~~~~~~~g~~~~r~~~l~~~l~~L~~la~~~~~~Vi~~nq~~ 274 (343)
T 1v5w_A 204 ELLDYVAAKFHEEAGIFKLLIIDSIMALFRVDFSGRGELAERQQKLAQMLSRLQKISEEYNVAVFVTNQMT 274 (343)
T ss_dssp HHHHHHHHHHHHSCSSEEEEEEETSGGGHHHHCCGGGCHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECC-
T ss_pred HHHHHHHHHHHhcCCCccEEEEechHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEeece
Confidence 4455566666 569999999999865432 134566667777764 78888877754
No 202
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.16 E-value=0.00011 Score=67.74 Aligned_cols=23 Identities=35% Similarity=0.616 Sum_probs=20.7
Q ss_pred CEEECCCCCcHHHHHHHHhCCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRIE 23 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~ 23 (592)
++|+||||||||||+++|++.+.
T Consensus 7 i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 7 IFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp EEEECCTTSCHHHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 47999999999999999999753
No 203
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.16 E-value=0.00035 Score=71.57 Aligned_cols=46 Identities=11% Similarity=0.144 Sum_probs=35.0
Q ss_pred hhCCcEEEEeCCCC-CCCHHHHHHHHHHHHHHHHcCCEEEEEecCCh
Q 048028 127 IHDPILLFLDEPTS-GLDSTSAFMVVNVLQRIAKSGSIVIMSIHQPS 172 (592)
Q Consensus 127 ~~~p~lllLDEPts-gLD~~~~~~i~~~l~~la~~g~tvi~~~H~~~ 172 (592)
..++++|++||+-. .-|......+...++.+.+.+..+|++++.+.
T Consensus 96 ~~~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~ 142 (324)
T 1l8q_A 96 YKSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHP 142 (324)
T ss_dssp HHTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCG
T ss_pred hcCCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCCh
Confidence 35699999999866 23447788888999888777777777777553
No 204
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.14 E-value=0.00015 Score=69.50 Aligned_cols=24 Identities=33% Similarity=0.483 Sum_probs=21.6
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRIEK 24 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~ 24 (592)
++|+||||||||||++.|++..++
T Consensus 11 i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 11 IVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp EEEECCTTSCHHHHHHHHHHSTTC
T ss_pred EEEECcCCCCHHHHHHHHHhhCCC
Confidence 479999999999999999998753
No 205
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.13 E-value=0.00011 Score=70.20 Aligned_cols=23 Identities=30% Similarity=0.642 Sum_probs=20.7
Q ss_pred CEEECCCCCcHHHHHHHHhCCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRIE 23 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~ 23 (592)
++|+||||||||||++.|.+..+
T Consensus 22 ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 22 LVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCT
T ss_pred EEEECcCCCCHHHHHHHHHhhCC
Confidence 47999999999999999998764
No 206
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.10 E-value=0.00026 Score=67.50 Aligned_cols=22 Identities=36% Similarity=0.592 Sum_probs=20.3
Q ss_pred CEEECCCCCcHHHHHHHHhCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRI 22 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~ 22 (592)
++|+|+||||||||.+.|++..
T Consensus 24 i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 24 IGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp EEEEESTTSSHHHHHHHHHTTS
T ss_pred EEEECCCCCCHHHHHHHHHHhc
Confidence 4799999999999999999975
No 207
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.10 E-value=6.2e-05 Score=71.87 Aligned_cols=35 Identities=29% Similarity=0.306 Sum_probs=27.6
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEe
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEV 37 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~ 37 (592)
++|+|+||||||||++.|++.+++. .|+|.+.+.+
T Consensus 25 i~i~G~~GsGKstl~~~l~~~~~~~--~~~v~~~~~d 59 (201)
T 1rz3_A 25 LGIDGLSRSGKTTLANQLSQTLREQ--GISVCVFHMD 59 (201)
T ss_dssp EEEEECTTSSHHHHHHHHHHHHHHT--TCCEEEEEGG
T ss_pred EEEECCCCCCHHHHHHHHHHHHhhc--CCeEEEeccC
Confidence 4899999999999999999987532 3777665543
No 208
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=97.03 E-value=0.0011 Score=67.96 Aligned_cols=53 Identities=9% Similarity=0.140 Sum_probs=41.5
Q ss_pred CCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCE--EEEEec
Q 048028 112 VSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVNVLQRIAKS-GSI--VIMSIH 169 (592)
Q Consensus 112 LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~la~~-g~t--vi~~~H 169 (592)
||.+|++|+..|...+.++++++.|+|... ..++.+.++++.++ |.. +|++-|
T Consensus 134 l~~~~~~~l~~a~~~l~~~~i~i~d~~~~~-----~~~i~~~i~~l~~~~~~~~~lVVID~ 189 (315)
T 3bh0_A 134 FASEDWGKLSMAIGEISNSNINIFDKAGQS-----VNYIWSKTRQTKRKNPGKRVIVMIDY 189 (315)
T ss_dssp HCSSCHHHHHHHHHHHHTSCEEEECCSCCB-----HHHHHHHHHHHHHTSSSCCEEEEEEC
T ss_pred CCHHHHHHHHHHHHHHhCCCEEEECCCCCC-----HHHHHHHHHHHHHhcCCCCeEEEEeC
Confidence 899999999999999999999999998643 44566777777654 555 666654
No 209
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=96.97 E-value=8.5e-05 Score=81.62 Aligned_cols=143 Identities=16% Similarity=0.118 Sum_probs=74.5
Q ss_pred CEEECCCCCcHHHHHHHHhCC----------------------C-CC-------------CCceeEEEECCEecCccc--
Q 048028 1 MAILGASGAGKTTLMDALAGR----------------------I-EK-------------ESLQGAVTLNGEVLESKL-- 42 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~----------------------~-~~-------------~~~~G~I~i~g~~~~~~~-- 42 (592)
.+|+|+|||||||||++|... . .. ...++.+.+||++++...
T Consensus 63 n~i~G~NGaGKS~lleAl~~llg~r~~~~~i~~g~~~a~v~~~f~~~~~~~~~~i~r~~~~~g~~~~~ing~~v~~~~l~ 142 (517)
T 4ad8_A 63 CAFTGETGAGKSIIVDALGLLLGGRANHDLIRSGEKELLVTGFWGDGDESEADSASRRLSSAGRGAARLSGEVVSVRELQ 142 (517)
T ss_dssp EEEEESHHHHHHHHTHHHHHHTCSCCCGGGBCTTCSEEEEEEEC--------CEEEEEEETTSCCEEESSSSBCCHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHHHhcCCcHHHHhcCCCCcEEEEEEEEecCCCCeEEEEEEEecCCCcEEEECCEECCHHHHH
Confidence 379999999999999999544 2 10 012467888888876422
Q ss_pred --ccceeEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcC-CcccccccccCCCCCCCCHHHHHH
Q 048028 43 --LKIISAYVMQDDLLFPMLTVEETLMFAAEFRLPRSVTKTKKQERVEALINQLG-LRSAAKTFIGDERHRGVSGGERRR 119 (592)
Q Consensus 43 --~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lg-L~~~~~~~vg~~~~~~LSgGerqR 119 (592)
....+..++|++.+....+..+. .|--..-...............++++.++ +....... .+.++-.+.|.
T Consensus 143 ~~~~~li~i~~q~~~~~l~~~~~rr-~~LD~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~l~~l~~ql 216 (517)
T 4ad8_A 143 EWAQGRLTIHWQHSAVSLLSPANQR-GLLDRRVTKEAQAYAAAHAAWREAVSRLERLQASQRER-----ARQIDLLAFQV 216 (517)
T ss_dssp HHHTTTEEEESGGGGGTTTSHHHHH-HHHHTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHH
T ss_pred HHhhhheEEeCCchHHhcCCHHHHH-HHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHhHHHH-----HHHHHHHHHHH
Confidence 23346778998776654333332 22111100000000111122333333321 11111111 12367777888
Q ss_pred HHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEE
Q 048028 120 VSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVNVLQRIAKSGSIV 164 (592)
Q Consensus 120 v~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~la~~g~tv 164 (592)
..|+.+ .|.+.....+.+.++++.+.+..+
T Consensus 217 ~ei~~~---------------~l~~~E~e~L~~~~~~L~~~~~~~ 246 (517)
T 4ad8_A 217 QEISEV---------------SPDPGEEEGLNTELSRLSNLHESS 246 (517)
T ss_dssp HHHHHH---------------CCCSSCHHHHHHHHHHHHHHC---
T ss_pred HHHHhc---------------CCCCCcHHHHHHHHHHHHHHHHHH
Confidence 888776 344455677888888887766544
No 210
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.94 E-value=0.0013 Score=65.67 Aligned_cols=22 Identities=36% Similarity=0.587 Sum_probs=19.5
Q ss_pred CEEECCCCCcHHHHHHHHhCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRI 22 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~ 22 (592)
+.|.||+|+|||||.++++...
T Consensus 54 ~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 54 ILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp EEEESSSSSSHHHHHHHHHHHT
T ss_pred EEEECCCCCcHHHHHHHHHHHh
Confidence 3589999999999999999864
No 211
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.86 E-value=0.00069 Score=65.29 Aligned_cols=45 Identities=13% Similarity=0.144 Sum_probs=31.4
Q ss_pred hCCcEEEEeCCCCCC-CHHHHHHHHHHHHHHHHcCCE-EEEEecCCh
Q 048028 128 HDPILLFLDEPTSGL-DSTSAFMVVNVLQRIAKSGSI-VIMSIHQPS 172 (592)
Q Consensus 128 ~~p~lllLDEPtsgL-D~~~~~~i~~~l~~la~~g~t-vi~~~H~~~ 172 (592)
.+|.++++||.-.-- +......+.+.+++....+.. +|++++.+.
T Consensus 103 ~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~ 149 (242)
T 3bos_A 103 EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASP 149 (242)
T ss_dssp GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCT
T ss_pred cCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCH
Confidence 468999999965432 233377788888888776765 777777543
No 212
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=96.83 E-value=0.00035 Score=68.23 Aligned_cols=67 Identities=15% Similarity=0.063 Sum_probs=40.4
Q ss_pred CHHHHHHHHHHHHHhhCCcEEEEeCCCC-CCCHHHHHHHHHHHHHHHHcCCEEEEEecCChhHHHhhhce
Q 048028 113 SGGERRRVSIGIHIIHDPILLFLDEPTS-GLDSTSAFMVVNVLQRIAKSGSIVIMSIHQPSYRILSLLDR 181 (592)
Q Consensus 113 SgGerqRv~ia~~L~~~p~lllLDEPts-gLD~~~~~~i~~~l~~la~~g~tvi~~~H~~~~~i~~~~D~ 181 (592)
+.|.-.+.. ...+.+-+++++||.-. ++|.......++.+.+...+-++++++..-+...+.+++++
T Consensus 162 Tpg~l~~~l--~~~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~~~~~~~~il~SAT~~~~~~~~~~~~ 229 (235)
T 3llm_A 162 TVGVLLRKL--EAGIRGISHVIVDEIHERDINTDFLLVVLRDVVQAYPEVRIVLMSATIDTSMFCEYFFN 229 (235)
T ss_dssp EHHHHHHHH--HHCCTTCCEEEECCTTSCCHHHHHHHHHHHHHHHHCTTSEEEEEECSSCCHHHHHHTTS
T ss_pred CHHHHHHHH--HhhhcCCcEEEEECCccCCcchHHHHHHHHHHHhhCCCCeEEEEecCCCHHHHHHHcCC
Confidence 445555543 33578999999999976 68777665555544443333346666655444445555553
No 213
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=96.81 E-value=0.0011 Score=60.44 Aligned_cols=22 Identities=36% Similarity=0.747 Sum_probs=20.2
Q ss_pred CEEECCCCCcHHHHHHHHhCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRI 22 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~ 22 (592)
++|+|++|+|||||++.++|..
T Consensus 6 v~lvG~~gvGKStL~~~l~~~~ 27 (165)
T 2wji_A 6 IALIGNPNVGKSTIFNALTGEN 27 (165)
T ss_dssp EEEECSTTSSHHHHHHHHHCCS
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 4899999999999999999864
No 214
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=96.74 E-value=0.0011 Score=61.07 Aligned_cols=22 Identities=50% Similarity=0.801 Sum_probs=20.2
Q ss_pred CEEECCCCCcHHHHHHHHhCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRI 22 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~ 22 (592)
++|+|++|+|||||++.|+|..
T Consensus 7 i~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 7 VVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp EEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 4899999999999999999864
No 215
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=96.72 E-value=0.0052 Score=63.91 Aligned_cols=22 Identities=27% Similarity=0.564 Sum_probs=19.4
Q ss_pred CEEECCCCCcHHHHHHHHhCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRI 22 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~ 22 (592)
+.|.||+|+|||||.++|+...
T Consensus 120 vLl~GppGtGKT~la~aia~~~ 141 (357)
T 3d8b_A 120 ILLFGPPGTGKTLIGKCIASQS 141 (357)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 3689999999999999999764
No 216
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.72 E-value=0.0012 Score=76.23 Aligned_cols=23 Identities=30% Similarity=0.543 Sum_probs=20.7
Q ss_pred CEEECCCCCcHHHHHHHHhCCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRIE 23 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~ 23 (592)
++|.||||+|||||+++|++...
T Consensus 241 vLL~Gp~GtGKTtLarala~~l~ 263 (806)
T 1ypw_A 241 ILLYGPPGTGKTLIARAVANETG 263 (806)
T ss_dssp EEECSCTTSSHHHHHHHHHHTTT
T ss_pred EEEECcCCCCHHHHHHHHHHHcC
Confidence 46899999999999999999864
No 217
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=96.69 E-value=0.00026 Score=73.72 Aligned_cols=36 Identities=17% Similarity=0.322 Sum_probs=28.1
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEec
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVL 38 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~ 38 (592)
++|+|++|||||||+|.|+|...+. .|+|.+.+.++
T Consensus 77 v~lvG~pgaGKSTLln~L~~~~~~~--~~~v~V~~~dp 112 (349)
T 2www_A 77 VGLSGPPGAGKSTFIEYFGKMLTER--GHKLSVLAVDP 112 (349)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHHT--TCCEEEEECCC
T ss_pred EEEEcCCCCCHHHHHHHHHHHhhhc--CCeEEEEeecC
Confidence 5899999999999999999976533 36776655543
No 218
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=96.66 E-value=0.00077 Score=61.24 Aligned_cols=18 Identities=44% Similarity=0.905 Sum_probs=17.1
Q ss_pred EEECCCCCcHHHHHHHHh
Q 048028 2 AILGASGAGKTTLMDALA 19 (592)
Q Consensus 2 aI~GpsGaGKSTLL~~l~ 19 (592)
+|+|||||||||++++|.
T Consensus 27 ~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 27 LIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp EEECCTTSSHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHH
Confidence 799999999999999987
No 219
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.66 E-value=0.00058 Score=65.80 Aligned_cols=54 Identities=28% Similarity=0.201 Sum_probs=35.0
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCC-CCceeEEEE--------CCEecCc----ccccceeEEEccCC
Q 048028 1 MAILGASGAGKTTLMDALAGRIEK-ESLQGAVTL--------NGEVLES----KLLKIISAYVMQDD 54 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~-~~~~G~I~i--------~g~~~~~----~~~~~~~~yv~Q~~ 54 (592)
++|+|||||||||+.+.|++.+.. ....|++.. +|.+++. ...++.+++++|++
T Consensus 8 i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 74 (227)
T 1cke_A 8 ITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLALAALHHHVDVASEDALVPLASHLDVRFVST 74 (227)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCcccCcceeehhhHHHHHcCCCccCHHHHHHHHHhCceeeecc
Confidence 489999999999999999986521 123466665 5555432 12334456776653
No 220
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=96.58 E-value=0.0029 Score=67.93 Aligned_cols=75 Identities=13% Similarity=0.092 Sum_probs=49.9
Q ss_pred CCCHHHHHHHHHHHHHh--hCCcEEEEeCCCCCCCH----------HHHHHHHHHHHHHHHc-CCEEEEEecCChh----
Q 048028 111 GVSGGERRRVSIGIHII--HDPILLFLDEPTSGLDS----------TSAFMVVNVLQRIAKS-GSIVIMSIHQPSY---- 173 (592)
Q Consensus 111 ~LSgGerqRv~ia~~L~--~~p~lllLDEPtsgLD~----------~~~~~i~~~l~~la~~-g~tvi~~~H~~~~---- 173 (592)
++|..+.+ +.++.+. .+|+++++|..+.-.+. ....++.+.|+.++++ +.+||+++|-...
T Consensus 292 ~~s~~~l~--~~~~~l~~~~~~~lIvID~l~~~~~~~~~~~~~~r~~~i~~i~~~Lk~lAke~~v~vi~lsql~r~~e~r 369 (444)
T 2q6t_A 292 DLTLMEVR--ARARRLVSQNQVGLIIIDYLQLMSGPGSGKSGENRQQEIAAISRGLKALARELGIPIIALSQLSRAVEAR 369 (444)
T ss_dssp TCBHHHHH--HHHHHHHHHSCCCEEEEECGGGCBCC-------CHHHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGGSS
T ss_pred CCCHHHHH--HHHHHHHHHcCCCEEEEcChhhcCCCcCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccC
Confidence 47776653 4555555 48999999998764432 1234677888888875 8888888873210
Q ss_pred --------------HHHhhhceEEEecC
Q 048028 174 --------------RILSLLDRLIILSH 187 (592)
Q Consensus 174 --------------~i~~~~D~v~ll~~ 187 (592)
.+...+|.|++|..
T Consensus 370 ~~~~p~l~dlr~Sg~ie~~aD~vi~L~r 397 (444)
T 2q6t_A 370 PNKRPMLSDLRESGSIEQDADLVMFIYR 397 (444)
T ss_dssp SSCSCCGGGGGGGCTTGGGCSEEEEEEE
T ss_pred CCCCCChHHhcchhHHHHhCCEEEEEec
Confidence 24556788887753
No 221
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=96.53 E-value=0.0012 Score=68.52 Aligned_cols=22 Identities=27% Similarity=0.525 Sum_probs=19.4
Q ss_pred CEEECCCCCcHHHHHHHHhCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRI 22 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~ 22 (592)
+.|.||+|+|||||++.++...
T Consensus 47 vll~G~~G~GKT~l~~~~~~~~ 68 (387)
T 2v1u_A 47 ALLYGLTGTGKTAVARLVLRRL 68 (387)
T ss_dssp EEECBCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 3689999999999999999764
No 222
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=96.53 E-value=0.005 Score=60.36 Aligned_cols=21 Identities=43% Similarity=0.634 Sum_probs=18.8
Q ss_pred EEECCCCCcHHHHHHHHhCCC
Q 048028 2 AILGASGAGKTTLMDALAGRI 22 (592)
Q Consensus 2 aI~GpsGaGKSTLL~~l~g~~ 22 (592)
.|.||+|+|||||.+.++...
T Consensus 43 ll~G~~GtGKT~la~~la~~~ 63 (262)
T 2qz4_A 43 LLLGPPGCGKTLLAKAVATEA 63 (262)
T ss_dssp EEESCTTSSHHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHh
Confidence 588999999999999999753
No 223
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.49 E-value=0.0008 Score=63.80 Aligned_cols=20 Identities=25% Similarity=0.531 Sum_probs=19.0
Q ss_pred CEEECCCCCcHHHHHHHHhC
Q 048028 1 MAILGASGAGKTTLMDALAG 20 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g 20 (592)
++|+|+|||||||+.+.|++
T Consensus 4 i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 4 IGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEECTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHH
Confidence 48999999999999999998
No 224
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.41 E-value=0.0026 Score=61.83 Aligned_cols=53 Identities=23% Similarity=0.378 Sum_probs=43.3
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEec---------CChhHHHhhhceEEEec
Q 048028 129 DPILLFLDEPTSGLDSTSAFMVVNVLQRIAKSGSIVIMSIH---------QPSYRILSLLDRLIILS 186 (592)
Q Consensus 129 ~p~lllLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~H---------~~~~~i~~~~D~v~ll~ 186 (592)
+|+++++||--. |+. ++++.++.+++.|..||++-| .++.++..++|+|.-|.
T Consensus 89 ~~dvViIDEaQ~-l~~----~~ve~l~~L~~~gi~Vil~Gl~~df~~~~F~~~~~Ll~lAD~V~el~ 150 (223)
T 2b8t_A 89 ETKVIGIDEVQF-FDD----RICEVANILAENGFVVIISGLDKNFKGEPFGPIAKLFTYADKITKLT 150 (223)
T ss_dssp TCCEEEECSGGG-SCT----HHHHHHHHHHHTTCEEEEECCSBCTTSSBCTTHHHHHHHCSEEEECC
T ss_pred CCCEEEEecCcc-CcH----HHHHHHHHHHhCCCeEEEEeccccccCCcCCCcHHHHHHhheEeecc
Confidence 589999999964 554 356677788878999999999 66778899999999875
No 225
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=96.34 E-value=0.0011 Score=71.00 Aligned_cols=24 Identities=33% Similarity=0.636 Sum_probs=21.5
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRIEK 24 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~ 24 (592)
++|+|||||||||||++|++...+
T Consensus 29 ~~i~G~nG~GKstll~ai~~~~~~ 52 (430)
T 1w1w_A 29 TSIIGPNGSGKSNMMDAISFVLGV 52 (430)
T ss_dssp EEEECSTTSSHHHHHHHHHHHTTC
T ss_pred EEEECCCCCCHHHHHHHHHhhhcc
Confidence 479999999999999999998754
No 226
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=96.29 E-value=0.026 Score=57.78 Aligned_cols=21 Identities=33% Similarity=0.578 Sum_probs=19.1
Q ss_pred EEECCCCCcHHHHHHHHhCCC
Q 048028 2 AILGASGAGKTTLMDALAGRI 22 (592)
Q Consensus 2 aI~GpsGaGKSTLL~~l~g~~ 22 (592)
.|.||+|+|||||.+.++...
T Consensus 49 LL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 49 LLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp EEESSSSSCHHHHHHHHHHHT
T ss_pred EEECCCCccHHHHHHHHHHHc
Confidence 588999999999999999864
No 227
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=96.25 E-value=0.00058 Score=71.45 Aligned_cols=23 Identities=35% Similarity=0.512 Sum_probs=20.2
Q ss_pred CEEECCCCCcHHHHHHHHhCCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRIE 23 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~ 23 (592)
++|+|++|+|||||++.|.|...
T Consensus 40 I~vvG~~g~GKSTLln~L~~~~~ 62 (361)
T 2qag_A 40 LMVVGESGLGKSTLINSLFLTDL 62 (361)
T ss_dssp EEECCCTTSCHHHHHHHHTTCCC
T ss_pred EEEEcCCCCCHHHHHHHHhCCCC
Confidence 47999999999999999988643
No 228
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=96.24 E-value=0.011 Score=61.55 Aligned_cols=76 Identities=11% Similarity=0.060 Sum_probs=45.1
Q ss_pred HHHHHHHHh--hCCcEEEEeCCCCCCCHH-------------HHHHHHHHHHHH---HH-cCCEEEEEecCChh------
Q 048028 119 RVSIGIHII--HDPILLFLDEPTSGLDST-------------SAFMVVNVLQRI---AK-SGSIVIMSIHQPSY------ 173 (592)
Q Consensus 119 Rv~ia~~L~--~~p~lllLDEPtsgLD~~-------------~~~~i~~~l~~l---a~-~g~tvi~~~H~~~~------ 173 (592)
-+.+++.++ .+++++++|+++.-.... .+..+.+.+++| ++ .+.+||++.|-...
T Consensus 129 ~~~~~~~l~~~~~~~lVVIDsl~~l~~~~e~~~~~g~~~~~~q~r~~~~~l~~L~~~a~~~~~~VI~~nq~~~~~~~~fg 208 (356)
T 1u94_A 129 ALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFG 208 (356)
T ss_dssp HHHHHHHHHHHTCCSEEEEECGGGCCCHHHHTTC------CHHHHHHHHHHHHHHHHHHHHTCEEEEEEC----------
T ss_pred HHHHHHHHHhccCCCEEEEcCHHHhcchhhhccccccchhHHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCcccC
Confidence 345556664 579999999999866311 122344455554 34 48888888774321
Q ss_pred ---------HHHhhhceEEEecCCeEeeec
Q 048028 174 ---------RILSLLDRLIILSHGQSVYNE 194 (592)
Q Consensus 174 ---------~i~~~~D~v~ll~~G~~v~~g 194 (592)
.+...+|-++.+.+.+....|
T Consensus 209 ~~~~~~gG~~l~~~advrl~l~r~~~~k~g 238 (356)
T 1u94_A 209 NPETTTGGNALKFYASVRLDIRRIGAVKEG 238 (356)
T ss_dssp ----CTTCSHHHHHCSEEEEEEEEEEEESS
T ss_pred CCcccCCCcceeeeccEEEEEEEeeeeccC
Confidence 245567877777766544333
No 229
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=96.21 E-value=0.0018 Score=60.20 Aligned_cols=22 Identities=41% Similarity=0.691 Sum_probs=19.6
Q ss_pred CEEECCCCCcHHHHHHHHhCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRI 22 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~ 22 (592)
++|+|++|+|||||++.++|..
T Consensus 5 v~ivG~~gvGKStLl~~l~~~~ 26 (184)
T 2zej_A 5 LMIVGNTGSGKTTLLQQLMKTK 26 (184)
T ss_dssp EEEESCTTSSHHHHHHHHTCC-
T ss_pred EEEECCCCCCHHHHHHHHhcCC
Confidence 5799999999999999999863
No 230
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.19 E-value=0.0018 Score=60.44 Aligned_cols=36 Identities=28% Similarity=0.322 Sum_probs=26.6
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCC-CCceeEEEECCE
Q 048028 1 MAILGASGAGKTTLMDALAGRIEK-ESLQGAVTLNGE 36 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~-~~~~G~I~i~g~ 36 (592)
++|+|+||||||||++.|.+.+.. +..-|.|..++.
T Consensus 9 i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~~ 45 (174)
T 1np6_A 9 LAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHH 45 (174)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC
T ss_pred EEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCCC
Confidence 479999999999999999987542 222367776554
No 231
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.11 E-value=0.0019 Score=61.22 Aligned_cols=22 Identities=32% Similarity=0.667 Sum_probs=19.8
Q ss_pred CEEECCCCCcHHHHHHHHhCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRI 22 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~ 22 (592)
++|.|+|||||||+.+.|++.+
T Consensus 21 I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 21 IVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp EEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 4799999999999999999764
No 232
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.11 E-value=0.0021 Score=61.07 Aligned_cols=23 Identities=30% Similarity=0.580 Sum_probs=20.2
Q ss_pred CEEECCCCCcHHHHHHHHhCCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRIE 23 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~ 23 (592)
++|+||||||||||.+.|+...+
T Consensus 15 i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 15 LVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp EEEECCTTSCHHHHHHHHHHHCT
T ss_pred EEEECCCCCCHHHHHHHHHHhCc
Confidence 46899999999999999998653
No 233
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=96.03 E-value=0.0027 Score=60.62 Aligned_cols=18 Identities=44% Similarity=0.905 Sum_probs=16.9
Q ss_pred EEECCCCCcHHHHHHHHh
Q 048028 2 AILGASGAGKTTLMDALA 19 (592)
Q Consensus 2 aI~GpsGaGKSTLL~~l~ 19 (592)
+|.|||||||||++++|.
T Consensus 27 ~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 27 LIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp EEECCTTSSHHHHHHHHH
T ss_pred EEEcCCCCCHHHHHHHHH
Confidence 799999999999999886
No 234
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=96.03 E-value=0.0022 Score=60.76 Aligned_cols=22 Identities=45% Similarity=0.619 Sum_probs=19.8
Q ss_pred CEEECCCCCcHHHHHHHHhCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRI 22 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~ 22 (592)
++|+||+||||||+.+.|++.+
T Consensus 28 i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 28 IFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHHHc
Confidence 4799999999999999999764
No 235
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=95.97 E-value=0.0027 Score=57.94 Aligned_cols=22 Identities=18% Similarity=0.262 Sum_probs=19.6
Q ss_pred CEEECCCCCcHHHHHHHHhCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRI 22 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~ 22 (592)
++|.|++||||||+.+.|+..+
T Consensus 4 i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 4 IILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp EEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 4789999999999999998764
No 236
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=95.94 E-value=0.0017 Score=71.66 Aligned_cols=34 Identities=26% Similarity=0.504 Sum_probs=27.3
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCE
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGE 36 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~ 36 (592)
++|+||||+|||||+++|++...+ ..|+|.++|.
T Consensus 111 vll~Gp~GtGKTtlar~ia~~l~~--~~~~i~~~~~ 144 (543)
T 3m6a_A 111 LCLAGPPGVGKTSLAKSIAKSLGR--KFVRISLGGV 144 (543)
T ss_dssp EEEESSSSSSHHHHHHHHHHHHTC--EEEEECCCC-
T ss_pred EEEECCCCCCHHHHHHHHHHhcCC--CeEEEEeccc
Confidence 468999999999999999998753 3477776664
No 237
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=95.91 E-value=0.014 Score=52.10 Aligned_cols=42 Identities=14% Similarity=0.078 Sum_probs=28.5
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCh
Q 048028 129 DPILLFLDEPTSGLDSTSAFMVVNVLQRIAKSGSIVIMSIHQPS 172 (592)
Q Consensus 129 ~p~lllLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~H~~~ 172 (592)
+..+|++||.- .|++..+..+.+.|+.. ..+..+|++++.+-
T Consensus 76 ~~g~l~ldei~-~l~~~~q~~Ll~~l~~~-~~~~~~I~~t~~~~ 117 (145)
T 3n70_A 76 QGGTLVLSHPE-HLTREQQYHLVQLQSQE-HRPFRLIGIGDTSL 117 (145)
T ss_dssp TTSCEEEECGG-GSCHHHHHHHHHHHHSS-SCSSCEEEEESSCH
T ss_pred CCcEEEEcChH-HCCHHHHHHHHHHHhhc-CCCEEEEEECCcCH
Confidence 34689999984 67888888887777332 12345777777654
No 238
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=95.83 E-value=0.0034 Score=59.24 Aligned_cols=22 Identities=41% Similarity=0.658 Sum_probs=19.1
Q ss_pred CEEECCCCCcHHHHHHHHhCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRI 22 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~ 22 (592)
+.|+||||||||||++.|....
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHhC
Confidence 4689999999999999987654
No 239
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=95.80 E-value=0.0032 Score=58.33 Aligned_cols=34 Identities=41% Similarity=0.522 Sum_probs=25.7
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCcee--EEEECCEe
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQG--AVTLNGEV 37 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G--~I~i~g~~ 37 (592)
++|+|++||||||+.+.|++.+.+ .| .+.++|..
T Consensus 8 i~l~G~~GsGKST~~~~L~~~l~~---~g~~~i~~d~~~ 43 (179)
T 2pez_A 8 VWLTGLSGAGKTTVSMALEEYLVC---HGIPCYTLDGDN 43 (179)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHH---TTCCEEEEEHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHhh---CCCcEEEECChH
Confidence 479999999999999999987642 24 55555443
No 240
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=95.75 E-value=0.0048 Score=65.04 Aligned_cols=36 Identities=22% Similarity=0.421 Sum_probs=26.5
Q ss_pred CEEECCCCCcHHHHHHHHhCCCC---------CCCceeEEEECCE
Q 048028 1 MAILGASGAGKTTLMDALAGRIE---------KESLQGAVTLNGE 36 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~---------~~~~~G~I~i~g~ 36 (592)
++|+|+||+|||||+|.|+|... ..+..|.+.+.|.
T Consensus 25 vgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~ 69 (396)
T 2ohf_A 25 IGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDE 69 (396)
T ss_dssp EEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCH
T ss_pred EEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCc
Confidence 48999999999999999999721 1234588877764
No 241
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=95.74 E-value=0.0033 Score=62.23 Aligned_cols=22 Identities=36% Similarity=0.584 Sum_probs=20.0
Q ss_pred CEEECCCCCcHHHHHHHHhCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRI 22 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~ 22 (592)
++|+|++||||||+.++|++.+
T Consensus 51 i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 51 MYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp EEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHhc
Confidence 4799999999999999999864
No 242
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=95.71 E-value=0.0063 Score=57.29 Aligned_cols=21 Identities=43% Similarity=0.656 Sum_probs=19.1
Q ss_pred CEEECCCCCcHHHHHHHHhCC
Q 048028 1 MAILGASGAGKTTLMDALAGR 21 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~ 21 (592)
++|+|++|+|||||++.+.+.
T Consensus 28 i~lvG~~~vGKSsLi~~l~~~ 48 (198)
T 1f6b_A 28 LVFLGLDNAGKTTLLHMLKDD 48 (198)
T ss_dssp EEEEEETTSSHHHHHHHHSCC
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 479999999999999999874
No 243
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=95.64 E-value=0.008 Score=56.11 Aligned_cols=21 Identities=43% Similarity=0.640 Sum_probs=19.1
Q ss_pred CEEECCCCCcHHHHHHHHhCC
Q 048028 1 MAILGASGAGKTTLMDALAGR 21 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~ 21 (592)
++|+|++|+|||||++.+.+.
T Consensus 26 i~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 26 LLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 479999999999999999974
No 244
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=95.63 E-value=0.0017 Score=62.15 Aligned_cols=34 Identities=29% Similarity=0.438 Sum_probs=26.6
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCcee--EEEECCE
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQG--AVTLNGE 36 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G--~I~i~g~ 36 (592)
++|.|++||||||+.+.|++.+.+ ..| .+.++|.
T Consensus 28 i~~~G~~GsGKsT~~~~l~~~l~~--~~g~~~~~~~~d 63 (211)
T 1m7g_A 28 IWLTGLSASGKSTLAVELEHQLVR--DRRVHAYRLDGD 63 (211)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHH--HHCCCEEEECHH
T ss_pred EEEECCCCCCHHHHHHHHHHHhcc--ccCCcEEEECCh
Confidence 468999999999999999988652 236 6777654
No 245
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=95.59 E-value=0.0022 Score=66.45 Aligned_cols=35 Identities=26% Similarity=0.396 Sum_probs=26.4
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEe
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEV 37 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~ 37 (592)
++|+|++|+|||||++.|++...+. .|+|.+-+.+
T Consensus 59 i~i~G~~g~GKSTl~~~l~~~~~~~--~~~v~v~~~d 93 (341)
T 2p67_A 59 LGVTGTPGAGKSTFLEAFGMLLIRE--GLKVAVIAVD 93 (341)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHHT--TCCEEEEEEC
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHhc--CCeEEEEeec
Confidence 4799999999999999999886532 3556554443
No 246
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=95.58 E-value=0.0075 Score=58.58 Aligned_cols=73 Identities=15% Similarity=0.200 Sum_probs=44.1
Q ss_pred HhhCCcEEEEeCCCCC-CCHHHHHHHHHHHHHHHHcCCEEEEEecCC-----h----------------hHHHhhhceEE
Q 048028 126 IIHDPILLFLDEPTSG-LDSTSAFMVVNVLQRIAKSGSIVIMSIHQP-----S----------------YRILSLLDRLI 183 (592)
Q Consensus 126 L~~~p~lllLDEPtsg-LD~~~~~~i~~~l~~la~~g~tvi~~~H~~-----~----------------~~i~~~~D~v~ 183 (592)
+..+|+++++||+-.- .+........+.+..+...|..++.|+|-- + ..+++.+|.|.
T Consensus 81 L~~~pdlvIVDElG~~~~~~~r~~~~~qDV~~~l~sgidVitT~Nlqh~esl~d~v~~itg~~v~e~vpd~~~~~a~~v~ 160 (228)
T 2r8r_A 81 LKAAPSLVLVDELAHTNAPGSRHTKRWQDIQELLAAGIDVYTTVNVQHLESLNDQVRGITGVQVRETLPDWVLQEAFDLV 160 (228)
T ss_dssp HHHCCSEEEESCTTCBCCTTCSSSBHHHHHHHHHHTTCEEEEEEEGGGBGGGHHHHHHHHSCCCCSCBCHHHHHTCSEEE
T ss_pred HhcCCCEEEEeCCCCCCcccchhHHHHHHHHHHHcCCCCEEEEccccccccHHHHHHHHcCCCcCCcCccHHHhhCCeEE
Confidence 4468999999998642 343333334444444555688899998811 1 13445566665
Q ss_pred EecCCeEeeecChhhHHHHHHH
Q 048028 184 ILSHGQSVYNETPSNLAQFFAE 205 (592)
Q Consensus 184 ll~~G~~v~~g~~~~~~~~f~~ 205 (592)
+++ -+|+++.+.+++
T Consensus 161 lvD-------~~p~~l~~rl~~ 175 (228)
T 2r8r_A 161 LID-------LPPRELLERLRD 175 (228)
T ss_dssp EBC-------CCHHHHHHHHHT
T ss_pred Eec-------CCHHHHHHHHHC
Confidence 553 467777766654
No 247
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=95.58 E-value=0.015 Score=51.86 Aligned_cols=42 Identities=10% Similarity=0.110 Sum_probs=29.5
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCC
Q 048028 129 DPILLFLDEPTSGLDSTSAFMVVNVLQRIAKSGSIVIMSIHQP 171 (592)
Q Consensus 129 ~p~lllLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~H~~ 171 (592)
+..+|++||.- .|+...+..+.+.+.+..+.+..+|++++.+
T Consensus 75 ~~~~l~lDei~-~l~~~~q~~Ll~~l~~~~~~~~~iI~~tn~~ 116 (143)
T 3co5_A 75 EGGVLYVGDIA-QYSRNIQTGITFIIGKAERCRVRVIASCSYA 116 (143)
T ss_dssp TTSEEEEEECT-TCCHHHHHHHHHHHHHHTTTTCEEEEEEEEC
T ss_pred CCCeEEEeChH-HCCHHHHHHHHHHHHhCCCCCEEEEEecCCC
Confidence 35689999975 5788888888887776543345677776654
No 248
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=95.52 E-value=0.0048 Score=61.42 Aligned_cols=47 Identities=11% Similarity=0.053 Sum_probs=32.0
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCChhHHHhhhceEEEe
Q 048028 138 PTSGLDSTSAFMVVNVLQRIAKS-GSIVIMSIHQPSYRILSLLDRLIIL 185 (592)
Q Consensus 138 PtsgLD~~~~~~i~~~l~~la~~-g~tvi~~~H~~~~~i~~~~D~v~ll 185 (592)
|||+++.....++.+.+.+..++ ..+..+..|... ++.+.++++.-.
T Consensus 144 ~~Sa~~g~gi~~l~~~i~~~~~~~~~~~~~~~~~~~-~~e~~~~~l~~~ 191 (271)
T 3k53_A 144 PTNAKKGEGVEELKRMIALMAEGKVTTNPIIPRYDE-DIEREIKHISEL 191 (271)
T ss_dssp ECBGGGTBTHHHHHHHHHHHHHTCCCCCCCCCCCCH-HHHHHHHHHHHH
T ss_pred EEEeCCCCCHHHHHHHHHHHHhccccCCCCCcCCCH-HHHHHHHHHHHH
Confidence 88988888888888888887654 334455666654 566666665433
No 249
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=95.52 E-value=0.03 Score=57.07 Aligned_cols=69 Identities=12% Similarity=0.064 Sum_probs=41.0
Q ss_pred HHHHHHHHh---hCCcEEEEeCCCCCCC--------HHH----HHHHHHHHHHHHHc-CCEEEEEecCCh----------
Q 048028 119 RVSIGIHII---HDPILLFLDEPTSGLD--------STS----AFMVVNVLQRIAKS-GSIVIMSIHQPS---------- 172 (592)
Q Consensus 119 Rv~ia~~L~---~~p~lllLDEPtsgLD--------~~~----~~~i~~~l~~la~~-g~tvi~~~H~~~---------- 172 (592)
-+..++.++ .+++++++|.-+.-.. ... ..+++..|++++++ +.+||++.|-..
T Consensus 191 ~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~~~~~~~r~~~~~~~~~~L~~la~~~~~~vi~~nq~~~~~~~~~g~~~ 270 (322)
T 2i1q_A 191 FAEKIEDLIQEGNNIKLVVIDSLTSTFRNEYTGRGKLAERQQKLGRHMATLNKLADLFNCVVLVTNQVSAKPDAFFGMAE 270 (322)
T ss_dssp HHHTHHHHHHTTCEEEEEEEECSSHHHHHHCCCTTSHHHHHHHHHHHHHHHHHHHHHTTCEEEEEECEECC-------CC
T ss_pred HHHHHHHHHhhccCccEEEEECcHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHhCCEEEEECceeecCCCCCCCCc
Confidence 344455555 3589999999876321 111 24556666777664 777777765321
Q ss_pred -----hHHHhhhceEEEecC
Q 048028 173 -----YRILSLLDRLIILSH 187 (592)
Q Consensus 173 -----~~i~~~~D~v~ll~~ 187 (592)
..+...+|.++.|++
T Consensus 271 ~~~g~~~~~~~~d~~i~l~~ 290 (322)
T 2i1q_A 271 QAIGGHIVGHAATFRFFVRK 290 (322)
T ss_dssp EESSHHHHHHHCSEEEEEEE
T ss_pred CCCCcHHHHhcCcEEEEEEe
Confidence 124456777777764
No 250
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=95.48 E-value=0.011 Score=54.82 Aligned_cols=21 Identities=24% Similarity=0.439 Sum_probs=18.0
Q ss_pred CEEECCCCCcHHHHHHHHhCC
Q 048028 1 MAILGASGAGKTTLMDALAGR 21 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~ 21 (592)
++|+|++|+|||||++.+.+.
T Consensus 23 i~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 23 VGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEECCTTSCHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 479999999999999776654
No 251
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=95.46 E-value=0.0058 Score=56.26 Aligned_cols=23 Identities=26% Similarity=0.478 Sum_probs=20.2
Q ss_pred CEEECCCCCcHHHHHHHHhCCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRIE 23 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~ 23 (592)
+.|.|++||||||+.+.|+..+.
T Consensus 6 i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 6 IILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp EEEECCTTSSHHHHHHHHHHHSS
T ss_pred EEEECCCCCCHHHHHHHHHHhcC
Confidence 36899999999999999998754
No 252
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=95.45 E-value=0.0058 Score=56.30 Aligned_cols=22 Identities=41% Similarity=0.667 Sum_probs=19.5
Q ss_pred CEEECCCCCcHHHHHHHHhCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRI 22 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~ 22 (592)
+.|+|++||||||+.+.|+..+
T Consensus 7 i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 7 IVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHHHc
Confidence 3689999999999999999753
No 253
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=95.43 E-value=0.0059 Score=57.30 Aligned_cols=22 Identities=36% Similarity=0.747 Sum_probs=19.9
Q ss_pred CEEECCCCCcHHHHHHHHhCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRI 22 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~ 22 (592)
++|.|++||||||+.+.|+..+
T Consensus 3 I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 3 IAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEECCCccCHHHHHHHHHHhc
Confidence 4799999999999999999864
No 254
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=95.39 E-value=0.0053 Score=60.66 Aligned_cols=22 Identities=27% Similarity=0.356 Sum_probs=19.7
Q ss_pred CEEECCCCCcHHHHHHHHhCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRI 22 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~ 22 (592)
++|+||||||||||-+.|++..
T Consensus 4 i~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 4 HLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHhcC
Confidence 4799999999999999999764
No 255
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=95.39 E-value=0.0061 Score=55.36 Aligned_cols=18 Identities=33% Similarity=0.626 Sum_probs=16.8
Q ss_pred CEEECCCCCcHHHHHHHH
Q 048028 1 MAILGASGAGKTTLMDAL 18 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l 18 (592)
++|.||+||||||+.+.|
T Consensus 4 I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 4 ILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEECCTTSCHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHH
Confidence 478999999999999999
No 256
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=95.35 E-value=0.051 Score=58.19 Aligned_cols=75 Identities=12% Similarity=0.053 Sum_probs=45.9
Q ss_pred CCCHHHHHHHHHHHHHh--hCCc--EEEEeCCCC---CC---C-HHHHHHHHHHHHHHHHc-CCEEEEEecCChh-----
Q 048028 111 GVSGGERRRVSIGIHII--HDPI--LLFLDEPTS---GL---D-STSAFMVVNVLQRIAKS-GSIVIMSIHQPSY----- 173 (592)
Q Consensus 111 ~LSgGerqRv~ia~~L~--~~p~--lllLDEPts---gL---D-~~~~~~i~~~l~~la~~-g~tvi~~~H~~~~----- 173 (592)
++|-.+-+. .++.+. .+|+ ++++|--+. +- + .....++...|+.+|++ |.+||+++|-...
T Consensus 290 ~~s~~~i~~--~ir~l~~~~~~~~~lIVID~Lq~~~~~~~~~~r~~~i~~i~~~Lk~lAke~~v~vi~lsql~r~~e~r~ 367 (444)
T 3bgw_A 290 GQSVNYIWS--KTRQTKRKNPGKRVIVMIDYLQLLEPAKANDSRTNQISQISRDLKKMARELDVVVIALSQLSRQVEQRQ 367 (444)
T ss_dssp SCBHHHHHH--HHHHHHHHSCSSCEEEEEECSTTSBCSCSSSCHHHHHHHHHHHHHHHHHHHTCEEEEEEECCGGGGGSS
T ss_pred CCCHHHHHH--HHHHHHHHhCCCCeEEEEecHHhccCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCccccccC
Confidence 356555432 334443 4789 999996542 11 1 11234667788888875 8899998884321
Q ss_pred -------------HHHhhhceEEEecC
Q 048028 174 -------------RILSLLDRLIILSH 187 (592)
Q Consensus 174 -------------~i~~~~D~v~ll~~ 187 (592)
.+...+|-|+.|..
T Consensus 368 ~krp~lsdlr~Sg~ieq~aD~Vi~L~r 394 (444)
T 3bgw_A 368 DKRPMLSDLRESGQLEQDADIIEFLYR 394 (444)
T ss_dssp CCCCCGGGCCSCSHHHHHCSEEEECCB
T ss_pred CCCCchhhhhhhhhHHhhCCEEEEEec
Confidence 25667777777753
No 257
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=95.34 E-value=0.068 Score=55.97 Aligned_cols=22 Identities=36% Similarity=0.625 Sum_probs=19.4
Q ss_pred CEEECCCCCcHHHHHHHHhCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRI 22 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~ 22 (592)
+.|.||+|+|||+|.++|+...
T Consensus 151 vLL~GppGtGKT~la~aia~~~ 172 (389)
T 3vfd_A 151 LLLFGPPGNGKTMLAKAVAAES 172 (389)
T ss_dssp EEEESSTTSCHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHhh
Confidence 3689999999999999998764
No 258
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=95.27 E-value=0.0072 Score=56.04 Aligned_cols=21 Identities=43% Similarity=0.583 Sum_probs=18.7
Q ss_pred CEEECCCCCcHHHHHHHHhCC
Q 048028 1 MAILGASGAGKTTLMDALAGR 21 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~ 21 (592)
++|.|++||||||+.+.|+..
T Consensus 7 I~l~G~~GsGKST~~~~La~~ 27 (186)
T 3cm0_A 7 VIFLGPPGAGKGTQASRLAQE 27 (186)
T ss_dssp EEEECCTTSCHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 478999999999999999854
No 259
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=95.26 E-value=0.024 Score=60.85 Aligned_cols=53 Identities=8% Similarity=0.123 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHhhCCcEEEEeCCC-CCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCh
Q 048028 116 ERRRVSIGIHIIHDPILLFLDEPT-SGLDSTSAFMVVNVLQRIAKSGSIVIMSIHQPS 172 (592)
Q Consensus 116 erqRv~ia~~L~~~p~lllLDEPt-sgLD~~~~~~i~~~l~~la~~g~tvi~~~H~~~ 172 (592)
+++....+...+.+++++++.... .++.... ..+.+.++ +.++.+|++.+..+
T Consensus 89 ~~~~~~~~~~~~~~ad~il~VvD~~~~~~~~d-~~l~~~l~---~~~~pvilV~NK~D 142 (456)
T 4dcu_A 89 LAQIRQQAEIAMDEADVIIFMVNGREGVTAAD-EEVAKILY---RTKKPVVLAVNKLD 142 (456)
T ss_dssp HHHHHHHHHHHHHHCSEEEEEEESSSCSCHHH-HHHHHHHT---TCCSCEEEEEECC-
T ss_pred HHHHHHHHHhhHhhCCEEEEEEeCCCCCChHH-HHHHHHHH---HcCCCEEEEEECcc
Confidence 566666777777788876655444 4555543 44555544 35777777777654
No 260
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=95.24 E-value=0.0078 Score=54.57 Aligned_cols=22 Identities=41% Similarity=0.759 Sum_probs=19.5
Q ss_pred CEEECCCCCcHHHHHHHHhCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRI 22 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~ 22 (592)
++|+|++|+|||||++.+.+..
T Consensus 7 i~i~G~~~vGKSsl~~~l~~~~ 28 (175)
T 2nzj_A 7 VVLLGDPGVGKTSLASLFAGKQ 28 (175)
T ss_dssp EEEECCTTSSHHHHHHHHHCC-
T ss_pred EEEECCCCccHHHHHHHHhcCC
Confidence 4799999999999999999864
No 261
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=95.21 E-value=0.0068 Score=56.26 Aligned_cols=22 Identities=32% Similarity=0.514 Sum_probs=19.9
Q ss_pred CEEECCCCCcHHHHHHHHhCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRI 22 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~ 22 (592)
++|+|++|+|||||++.+.+..
T Consensus 51 i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 51 IIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp EEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEECCCCCCHHHHHHHHhcCC
Confidence 4799999999999999999864
No 262
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=95.21 E-value=0.0081 Score=54.10 Aligned_cols=21 Identities=33% Similarity=0.620 Sum_probs=19.3
Q ss_pred CEEECCCCCcHHHHHHHHhCC
Q 048028 1 MAILGASGAGKTTLMDALAGR 21 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~ 21 (592)
++|+|++|+|||||++.+.+.
T Consensus 6 i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 6 VAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEECCTTSSHHHHHHHHHTC
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 479999999999999999975
No 263
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=95.20 E-value=0.0066 Score=54.64 Aligned_cols=23 Identities=35% Similarity=0.645 Sum_probs=19.4
Q ss_pred CEEECCCCCcHHHHHHHHhCCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRIE 23 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~ 23 (592)
++|+|++|+|||||++.+.|...
T Consensus 5 i~~vG~~~~GKSsli~~l~~~~~ 27 (166)
T 3q72_A 5 VLLLGAPGVGKSALARIFGGVED 27 (166)
T ss_dssp EEEEESTTSSHHHHHHHHCCC--
T ss_pred EEEECCCCCCHHHHHHHHcCccc
Confidence 47999999999999999987643
No 264
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=95.17 E-value=0.0071 Score=54.34 Aligned_cols=22 Identities=23% Similarity=0.567 Sum_probs=19.6
Q ss_pred CEEECCCCCcHHHHHHHHhCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRI 22 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~ 22 (592)
++|+|++|+|||||++.+.+..
T Consensus 8 i~v~G~~~~GKssl~~~l~~~~ 29 (168)
T 1z2a_A 8 MVVVGNGAVGKSSMIQRYCKGI 29 (168)
T ss_dssp EEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEECcCCCCHHHHHHHHHcCC
Confidence 4799999999999999998753
No 265
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=95.16 E-value=0.0079 Score=58.83 Aligned_cols=22 Identities=32% Similarity=0.596 Sum_probs=19.4
Q ss_pred CEEECCCCCcHHHHHHHHhCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRI 22 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~ 22 (592)
++|.||+||||||+.+.|+..+
T Consensus 12 i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 12 VAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 4799999999999999999653
No 266
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=95.16 E-value=0.0081 Score=55.70 Aligned_cols=22 Identities=23% Similarity=0.403 Sum_probs=19.3
Q ss_pred CEEECCCCCcHHHHHHHHhCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRI 22 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~ 22 (592)
+.|.|++||||||+.+.|+..+
T Consensus 6 I~i~G~~GsGKsT~~~~L~~~l 27 (192)
T 1kht_A 6 VVVTGVPGVGSTTSSQLAMDNL 27 (192)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999998753
No 267
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=95.16 E-value=0.0082 Score=55.07 Aligned_cols=20 Identities=25% Similarity=0.542 Sum_probs=18.3
Q ss_pred CEEECCCCCcHHHHHHHHhC
Q 048028 1 MAILGASGAGKTTLMDALAG 20 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g 20 (592)
+.|.|++||||||+.+.|+.
T Consensus 5 I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 5 ILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEecCCCCCHHHHHHHHHh
Confidence 36899999999999999986
No 268
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=95.15 E-value=0.049 Score=56.43 Aligned_cols=22 Identities=32% Similarity=0.560 Sum_probs=19.3
Q ss_pred CEEECCCCCcHHHHHHHHhCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRI 22 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~ 22 (592)
+.|.||+|+|||||.++++...
T Consensus 87 iLL~GppGtGKT~la~ala~~~ 108 (355)
T 2qp9_X 87 ILLYGPPGTGKSYLAKAVATEA 108 (355)
T ss_dssp EEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHHh
Confidence 3688999999999999999764
No 269
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=95.12 E-value=0.0053 Score=60.55 Aligned_cols=33 Identities=30% Similarity=0.489 Sum_probs=25.8
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEe
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEV 37 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~ 37 (592)
+.|+|+|||||||+.+.|+..+. . +.+.+++..
T Consensus 35 i~l~G~~GsGKSTla~~L~~~l~--~--~~~~~~~D~ 67 (253)
T 2p5t_B 35 ILLGGQSGAGKTTIHRIKQKEFQ--G--NIVIIDGDS 67 (253)
T ss_dssp EEEESCGGGTTHHHHHHHHHHTT--T--CCEEECGGG
T ss_pred EEEECCCCCCHHHHHHHHHHhcC--C--CcEEEecHH
Confidence 36899999999999999998754 1 456677644
No 270
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=95.11 E-value=0.0076 Score=56.11 Aligned_cols=23 Identities=35% Similarity=0.553 Sum_probs=20.6
Q ss_pred CEEECCCCCcHHHHHHHHhCCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRIE 23 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~ 23 (592)
+.|+|++||||||+.+.|++.+.
T Consensus 16 i~l~G~~GsGKsT~~~~L~~~l~ 38 (186)
T 2yvu_A 16 VWLTGLPGSGKTTIATRLADLLQ 38 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHHHHH
Confidence 36899999999999999998765
No 271
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=95.11 E-value=0.0073 Score=59.34 Aligned_cols=23 Identities=39% Similarity=0.710 Sum_probs=20.2
Q ss_pred CEEECCCCCcHHHHHHHHhCCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRIE 23 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~ 23 (592)
+.|.||+|+|||||+++|++...
T Consensus 48 vll~G~~GtGKT~la~~la~~~~ 70 (257)
T 1lv7_A 48 VLMVGPPGTGKTLLAKAIAGEAK 70 (257)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEECcCCCCHHHHHHHHHHHcC
Confidence 36899999999999999998753
No 272
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=95.10 E-value=0.0085 Score=57.31 Aligned_cols=20 Identities=40% Similarity=0.709 Sum_probs=18.7
Q ss_pred CEEECCCCCcHHHHHHHHhC
Q 048028 1 MAILGASGAGKTTLMDALAG 20 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g 20 (592)
++|.|++||||||+.+.|+.
T Consensus 7 I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 7 VALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp EEEECCTTSCHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 47999999999999999987
No 273
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=95.09 E-value=0.0091 Score=53.85 Aligned_cols=22 Identities=36% Similarity=0.664 Sum_probs=19.3
Q ss_pred CEEECCCCCcHHHHHHHHhCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRI 22 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~ 22 (592)
++|+|++|+|||||++.+.+..
T Consensus 5 i~ivG~~~~GKSsli~~l~~~~ 26 (169)
T 3q85_A 5 VMLVGESGVGKSTLAGTFGGLQ 26 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHCC-
T ss_pred EEEECCCCCCHHHHHHHHHhcc
Confidence 4799999999999999998754
No 274
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=95.08 E-value=0.008 Score=53.76 Aligned_cols=22 Identities=27% Similarity=0.534 Sum_probs=19.3
Q ss_pred CEEECCCCCcHHHHHHHHhCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRI 22 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~ 22 (592)
++|+|++|+|||||++.+.+..
T Consensus 6 i~v~G~~~~GKSsli~~l~~~~ 27 (167)
T 1kao_A 6 VVVLGSGGVGKSALTVQFVTGT 27 (167)
T ss_dssp EEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHHcCC
Confidence 4799999999999999998653
No 275
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=95.06 E-value=0.0083 Score=53.58 Aligned_cols=22 Identities=27% Similarity=0.552 Sum_probs=19.8
Q ss_pred CEEECCCCCcHHHHHHHHhCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRI 22 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~ 22 (592)
++++|++|+|||||++.+.+..
T Consensus 4 i~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 4 VVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEECCTTSSHHHHHHHHHHCC
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 4799999999999999999864
No 276
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=95.05 E-value=0.0086 Score=54.52 Aligned_cols=22 Identities=36% Similarity=0.649 Sum_probs=19.8
Q ss_pred CEEECCCCCcHHHHHHHHhCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRI 22 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~ 22 (592)
++|+|++|+|||||++.+.+..
T Consensus 12 i~v~G~~~~GKssl~~~l~~~~ 33 (181)
T 3tw8_B 12 LLIIGDSGVGKSSLLLRFADNT 33 (181)
T ss_dssp EEEECCTTSCHHHHHHHHCSCC
T ss_pred EEEECCCCCCHHHHHHHHhcCC
Confidence 4799999999999999998764
No 277
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=95.05 E-value=0.0042 Score=58.99 Aligned_cols=23 Identities=48% Similarity=0.794 Sum_probs=20.5
Q ss_pred CEEECCCCCcHHHHHHHHhCCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRIE 23 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~ 23 (592)
++|.|++||||||+.+.|+..+.
T Consensus 3 I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 3 IAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHHHHH
Confidence 47999999999999999998754
No 278
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=95.04 E-value=0.0091 Score=59.75 Aligned_cols=22 Identities=32% Similarity=0.711 Sum_probs=20.1
Q ss_pred CEEECCCCCcHHHHHHHHhCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRI 22 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~ 22 (592)
++|+|++|+|||||+|.|+|..
T Consensus 6 I~lvG~~nvGKSTL~n~L~g~~ 27 (272)
T 3b1v_A 6 IALIGNPNSGKTSLFNLITGHN 27 (272)
T ss_dssp EEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEECCCCCCHHHHHHHHHCCC
Confidence 5899999999999999999863
No 279
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=95.03 E-value=0.0084 Score=53.69 Aligned_cols=22 Identities=23% Similarity=0.385 Sum_probs=19.6
Q ss_pred CEEECCCCCcHHHHHHHHhCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRI 22 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~ 22 (592)
++++|++|+|||||++.+.+..
T Consensus 7 i~v~G~~~~GKssl~~~l~~~~ 28 (168)
T 1u8z_A 7 VIMVGSGGVGKSALTLQFMYDE 28 (168)
T ss_dssp EEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHHhCc
Confidence 4799999999999999998753
No 280
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.99 E-value=0.085 Score=55.94 Aligned_cols=65 Identities=22% Similarity=0.386 Sum_probs=40.6
Q ss_pred hhCCcEEEEeCCCC----------CCCHHHHHHHHHHHHHHHH----cCCEEEEEecCChhHHHhhhceEEEecCCeE--
Q 048028 127 IHDPILLFLDEPTS----------GLDSTSAFMVVNVLQRIAK----SGSIVIMSIHQPSYRILSLLDRLIILSHGQS-- 190 (592)
Q Consensus 127 ~~~p~lllLDEPts----------gLD~~~~~~i~~~l~~la~----~g~tvi~~~H~~~~~i~~~~D~v~ll~~G~~-- 190 (592)
-..|.|+++||--+ +=|......+.++|..+-. .+..||.+|+.|.. .|.- ++..||.
T Consensus 273 ~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~~~ViVIaATNrpd~-----LDpA-LlRpGRfD~ 346 (437)
T 4b4t_I 273 ENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRGDVKVIMATNKIET-----LDPA-LIRPGRIDR 346 (437)
T ss_dssp HTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCSSSEEEEEEESCSTT-----CCTT-SSCTTTEEE
T ss_pred hcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCCCCEEEEEeCCChhh-----cCHH-HhcCCceeE
Confidence 35699999999653 2233445566667766642 24568889999862 3433 3455654
Q ss_pred -eeecChh
Q 048028 191 -VYNETPS 197 (592)
Q Consensus 191 -v~~g~~~ 197 (592)
++.+.|+
T Consensus 347 ~I~v~lPd 354 (437)
T 4b4t_I 347 KILFENPD 354 (437)
T ss_dssp EECCCCCC
T ss_pred EEEcCCcC
Confidence 6777665
No 281
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=94.99 E-value=0.0079 Score=53.65 Aligned_cols=22 Identities=32% Similarity=0.539 Sum_probs=19.6
Q ss_pred CEEECCCCCcHHHHHHHHhCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRI 22 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~ 22 (592)
++++|++|+|||||++.+.+..
T Consensus 6 i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 6 LVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEECCCCCCHHHHHHHHHhCc
Confidence 4799999999999999998763
No 282
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=94.99 E-value=0.0081 Score=55.52 Aligned_cols=21 Identities=48% Similarity=0.729 Sum_probs=19.4
Q ss_pred CEEECCCCCcHHHHHHHHhCC
Q 048028 1 MAILGASGAGKTTLMDALAGR 21 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~ 21 (592)
++|+|++|+|||||++.+.+.
T Consensus 19 i~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 19 ILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp EEEEESTTSSHHHHHHHHCCS
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 479999999999999999876
No 283
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=94.97 E-value=0.0089 Score=55.44 Aligned_cols=23 Identities=30% Similarity=0.434 Sum_probs=20.0
Q ss_pred CEEECCCCCcHHHHHHHHhCCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRIE 23 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~ 23 (592)
++|+|++|||||||++.|+..+.
T Consensus 7 i~i~G~sGsGKTTl~~~L~~~l~ 29 (169)
T 1xjc_A 7 WQVVGYKHSGKTTLMEKWVAAAV 29 (169)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHhhH
Confidence 47899999999999999987654
No 284
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=94.97 E-value=0.009 Score=53.77 Aligned_cols=22 Identities=27% Similarity=0.557 Sum_probs=20.0
Q ss_pred CEEECCCCCcHHHHHHHHhCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRI 22 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~ 22 (592)
++|+|++|+|||||++.+.+..
T Consensus 9 i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 9 VCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEECcCCCCHHHHHHHHHcCC
Confidence 4799999999999999999875
No 285
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=94.96 E-value=0.01 Score=53.97 Aligned_cols=22 Identities=41% Similarity=0.611 Sum_probs=19.6
Q ss_pred CEEECCCCCcHHHHHHHHhCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRI 22 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~ 22 (592)
++|+|++|+|||||++.+.+..
T Consensus 11 i~v~G~~~~GKssl~~~l~~~~ 32 (178)
T 2lkc_A 11 VTIMGHVDHGKTTLLDAIRHSK 32 (178)
T ss_dssp EEEESCTTTTHHHHHHHHHTTC
T ss_pred EEEECCCCCCHHHHHHHHhCCc
Confidence 4799999999999999998753
No 286
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=94.96 E-value=0.009 Score=55.38 Aligned_cols=22 Identities=23% Similarity=0.442 Sum_probs=19.6
Q ss_pred CEEECCCCCcHHHHHHHHhCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRI 22 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~ 22 (592)
+.|.|++||||||+.+.|+..+
T Consensus 4 I~i~G~~GsGKsT~~~~L~~~l 25 (194)
T 1nks_A 4 GIVTGIPGVGKSTVLAKVKEIL 25 (194)
T ss_dssp EEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 4789999999999999998764
No 287
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=94.96 E-value=0.0099 Score=58.43 Aligned_cols=23 Identities=26% Similarity=0.598 Sum_probs=20.6
Q ss_pred CEEECCCCCcHHHHHHHHhCCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRIE 23 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~ 23 (592)
++|+|++|+|||||+|.|.|...
T Consensus 24 I~lvG~~g~GKSSlin~l~~~~~ 46 (247)
T 3lxw_A 24 LILVGRTGAGKSATGNSILGQRR 46 (247)
T ss_dssp EEEESSTTSSHHHHHHHHHTSCC
T ss_pred EEEECCCCCcHHHHHHHHhCCCC
Confidence 58999999999999999998743
No 288
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=94.96 E-value=0.0099 Score=54.93 Aligned_cols=21 Identities=43% Similarity=0.673 Sum_probs=18.6
Q ss_pred CEEECCCCCcHHHHHHHHhCC
Q 048028 1 MAILGASGAGKTTLMDALAGR 21 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~ 21 (592)
+.|.|++||||||+.+.|+..
T Consensus 14 i~i~G~~GsGKst~~~~l~~~ 34 (180)
T 3iij_A 14 ILLTGTPGVGKTTLGKELASK 34 (180)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHHHH
Confidence 368999999999999999854
No 289
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=94.95 E-value=0.0091 Score=53.83 Aligned_cols=22 Identities=27% Similarity=0.400 Sum_probs=19.6
Q ss_pred CEEECCCCCcHHHHHHHHhCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRI 22 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~ 22 (592)
++|+|++|+|||||++.+.+..
T Consensus 9 i~v~G~~~~GKssli~~l~~~~ 30 (170)
T 1z08_A 9 VVLLGEGCVGKTSLVLRYCENK 30 (170)
T ss_dssp EEEECCTTSCHHHHHHHHHHCC
T ss_pred EEEECcCCCCHHHHHHHHHcCC
Confidence 4799999999999999999763
No 290
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=94.93 E-value=0.061 Score=66.24 Aligned_cols=72 Identities=11% Similarity=0.105 Sum_probs=45.7
Q ss_pred HHHHHHHHHh--hCCcEEEEeCCCCCCC-H------------HHHHHHHHHHHHH---HH-cCCEEEEEecC--------
Q 048028 118 RRVSIGIHII--HDPILLFLDEPTSGLD-S------------TSAFMVVNVLQRI---AK-SGSIVIMSIHQ-------- 170 (592)
Q Consensus 118 qRv~ia~~L~--~~p~lllLDEPtsgLD-~------------~~~~~i~~~l~~l---a~-~g~tvi~~~H~-------- 170 (592)
+-...++.++ .+|+++++|+.+.=.. . ...+++.+.+++| ++ .|.+||++.|-
T Consensus 797 ei~~~l~~lv~~~~~~lVVIDsLq~l~~~~e~~~~~G~~~~~~q~reis~~Lr~Lk~lAke~gi~VIlinql~r~~g~~~ 876 (1706)
T 3cmw_A 797 QALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMF 876 (1706)
T ss_dssp HHHHHHHHHHHHTCCSEEEESCSTTCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHHHTCEEEEEECEEECTTCCS
T ss_pred HHHHHHHHHHHccCCCEEEEechhhhccccccccccCccchhHHHHHHHHHHHHHHHHHHHcCCEEEEEecCCCcccccc
Confidence 3444444444 5799999999987552 1 1234455555554 54 48899998882
Q ss_pred --C-----hhHHHhhhceEEEecCCe
Q 048028 171 --P-----SYRILSLLDRLIILSHGQ 189 (592)
Q Consensus 171 --~-----~~~i~~~~D~v~ll~~G~ 189 (592)
| +..+.+.+|-++.+++++
T Consensus 877 Gdp~~p~gs~~Leq~ADvvl~L~R~~ 902 (1706)
T 3cmw_A 877 GNPETTTGGNALKFYASVRLDIRRIG 902 (1706)
T ss_dssp SCCEEESSCSHHHHHEEEEEEEEEEE
T ss_pred CCccccCCcchhhheeeEEEEEEecc
Confidence 2 124667788899886544
No 291
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.92 E-value=0.0093 Score=53.60 Aligned_cols=22 Identities=18% Similarity=0.450 Sum_probs=19.6
Q ss_pred CEEECCCCCcHHHHHHHHhCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRI 22 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~ 22 (592)
++++|++|+|||||++.+.+..
T Consensus 6 i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 6 LVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHhcCC
Confidence 4799999999999999998764
No 292
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=94.91 E-value=0.01 Score=54.93 Aligned_cols=22 Identities=36% Similarity=0.513 Sum_probs=19.2
Q ss_pred CEEECCCCCcHHHHHHHHhCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRI 22 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~ 22 (592)
+.|+|++||||||+.+.|+..+
T Consensus 8 i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 8 IYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 3689999999999999998653
No 293
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=94.91 E-value=0.0094 Score=53.46 Aligned_cols=22 Identities=32% Similarity=0.623 Sum_probs=19.5
Q ss_pred CEEECCCCCcHHHHHHHHhCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRI 22 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~ 22 (592)
++|+|++|+|||||++.+.+..
T Consensus 6 i~v~G~~~~GKssli~~l~~~~ 27 (167)
T 1c1y_A 6 LVVLGSGGVGKSALTVQFVQGI 27 (167)
T ss_dssp EEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEECCCCCCHHHHHHHHHcCC
Confidence 4799999999999999998753
No 294
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=94.90 E-value=0.0096 Score=54.16 Aligned_cols=22 Identities=32% Similarity=0.620 Sum_probs=19.6
Q ss_pred CEEECCCCCcHHHHHHHHhCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRI 22 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~ 22 (592)
++|+|++|+|||||++.+.+..
T Consensus 10 i~v~G~~~~GKSsli~~l~~~~ 31 (177)
T 1wms_A 10 VILLGDGGVGKSSLMNRYVTNK 31 (177)
T ss_dssp EEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHHcCC
Confidence 4799999999999999998753
No 295
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=94.89 E-value=0.0092 Score=55.37 Aligned_cols=22 Identities=32% Similarity=0.637 Sum_probs=19.5
Q ss_pred CEEECCCCCcHHHHHHHHhCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRI 22 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~ 22 (592)
++|+|++|+|||||++.+.+..
T Consensus 26 i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 1svi_A 26 IALAGRSNVGKSSFINSLINRK 47 (195)
T ss_dssp EEEEEBTTSSHHHHHHHHHTC-
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 4799999999999999999863
No 296
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=94.89 E-value=0.0087 Score=53.89 Aligned_cols=22 Identities=27% Similarity=0.533 Sum_probs=19.7
Q ss_pred CEEECCCCCcHHHHHHHHhCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRI 22 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~ 22 (592)
++|+|++|+|||||++.+.+..
T Consensus 6 i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1g16_A 6 ILLIGDSGVGKSCLLVRFVEDK 27 (170)
T ss_dssp EEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEECcCCCCHHHHHHHHHhCC
Confidence 4799999999999999999764
No 297
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=94.86 E-value=0.0099 Score=54.15 Aligned_cols=22 Identities=45% Similarity=0.667 Sum_probs=19.6
Q ss_pred CEEECCCCCcHHHHHHHHhCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRI 22 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~ 22 (592)
++|+|++|+|||||++.+.+..
T Consensus 11 i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 11 VIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp EEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHHhCc
Confidence 4799999999999999998764
No 298
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=94.82 E-value=0.0096 Score=55.87 Aligned_cols=21 Identities=33% Similarity=0.533 Sum_probs=19.3
Q ss_pred CEEECCCCCcHHHHHHHHhCC
Q 048028 1 MAILGASGAGKTTLMDALAGR 21 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~ 21 (592)
++|.|++||||||+.+.|+..
T Consensus 11 I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 11 IGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp EEEEECTTSCHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHC
Confidence 479999999999999999975
No 299
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=94.80 E-value=0.01 Score=54.85 Aligned_cols=22 Identities=41% Similarity=0.673 Sum_probs=19.9
Q ss_pred CEEECCCCCcHHHHHHHHhCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRI 22 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~ 22 (592)
++|+|++|+|||||++.+.+..
T Consensus 26 i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 26 VAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp EEEEEBTTSSHHHHHHHHHTSC
T ss_pred EEEECCCCCCHHHHHHHHHcCc
Confidence 4799999999999999999874
No 300
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=94.80 E-value=0.012 Score=54.96 Aligned_cols=21 Identities=33% Similarity=0.680 Sum_probs=19.1
Q ss_pred CEEECCCCCcHHHHHHHHhCC
Q 048028 1 MAILGASGAGKTTLMDALAGR 21 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~ 21 (592)
++|+|++||||||+.+.|+..
T Consensus 13 I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 13 ILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 479999999999999999875
No 301
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=94.78 E-value=0.01 Score=54.58 Aligned_cols=22 Identities=36% Similarity=0.590 Sum_probs=19.8
Q ss_pred CEEECCCCCcHHHHHHHHhCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRI 22 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~ 22 (592)
++|+|++|+|||||++.+.+..
T Consensus 4 i~v~G~~~~GKSsli~~l~~~~ 25 (190)
T 2cxx_A 4 IIFAGRSNVGKSTLIYRLTGKK 25 (190)
T ss_dssp EEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEECCCCCCHHHHHHHHhCcC
Confidence 4799999999999999999863
No 302
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=94.77 E-value=0.011 Score=55.03 Aligned_cols=21 Identities=43% Similarity=0.569 Sum_probs=18.7
Q ss_pred CEEECCCCCcHHHHHHHHhCC
Q 048028 1 MAILGASGAGKTTLMDALAGR 21 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~ 21 (592)
+.|.|++||||||+.+.|+..
T Consensus 8 I~l~G~~GsGKST~~~~L~~~ 28 (193)
T 2rhm_A 8 IIVTGHPATGKTTLSQALATG 28 (193)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 368999999999999999864
No 303
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=94.75 E-value=0.01 Score=54.07 Aligned_cols=22 Identities=23% Similarity=0.495 Sum_probs=19.7
Q ss_pred CEEECCCCCcHHHHHHHHhCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRI 22 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~ 22 (592)
++|+|++|+|||||++.+.+..
T Consensus 12 i~v~G~~~~GKssli~~l~~~~ 33 (181)
T 2fn4_A 12 LVVVGGGGVGKSALTIQFIQSY 33 (181)
T ss_dssp EEEEECTTSSHHHHHHHHHHSS
T ss_pred EEEECCCCCCHHHHHHHHHhCc
Confidence 4799999999999999998763
No 304
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=94.73 E-value=0.013 Score=53.39 Aligned_cols=22 Identities=32% Similarity=0.590 Sum_probs=19.7
Q ss_pred CEEECCCCCcHHHHHHHHhCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRI 22 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~ 22 (592)
++|+|++|+|||||++.+.+..
T Consensus 9 i~v~G~~~~GKssl~~~l~~~~ 30 (178)
T 2hxs_A 9 IVVLGDGASGKTSLTTCFAQET 30 (178)
T ss_dssp EEEECCTTSSHHHHHHHHHGGG
T ss_pred EEEECcCCCCHHHHHHHHHhCc
Confidence 4799999999999999998753
No 305
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=94.71 E-value=0.011 Score=53.02 Aligned_cols=21 Identities=29% Similarity=0.523 Sum_probs=19.0
Q ss_pred CEEECCCCCcHHHHHHHHhCC
Q 048028 1 MAILGASGAGKTTLMDALAGR 21 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~ 21 (592)
++|+|++|+|||||++.+.+.
T Consensus 9 i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 9 LVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 479999999999999999864
No 306
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=94.70 E-value=0.011 Score=54.17 Aligned_cols=22 Identities=32% Similarity=0.540 Sum_probs=19.8
Q ss_pred CEEECCCCCcHHHHHHHHhCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRI 22 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~ 22 (592)
++|+|++|+|||||++.+.+..
T Consensus 7 i~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 7 LVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEECCCCCCHHHHHHHHHhCC
Confidence 4799999999999999998764
No 307
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=94.70 E-value=0.017 Score=60.25 Aligned_cols=35 Identities=31% Similarity=0.406 Sum_probs=26.3
Q ss_pred CEEECCCCCcHHHHHHHHhCCCC---------CCCceeEEEECC
Q 048028 1 MAILGASGAGKTTLMDALAGRIE---------KESLQGAVTLNG 35 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~---------~~~~~G~I~i~g 35 (592)
++|+|.+|+|||||+|.|+|... ..+..|.+.+++
T Consensus 5 I~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~ 48 (363)
T 1jal_A 5 CGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPD 48 (363)
T ss_dssp EEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCC
T ss_pred EEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCC
Confidence 48999999999999999998431 123357777765
No 308
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=94.68 E-value=0.011 Score=57.43 Aligned_cols=21 Identities=33% Similarity=0.521 Sum_probs=19.3
Q ss_pred CEEECCCCCcHHHHHHHHhCC
Q 048028 1 MAILGASGAGKTTLMDALAGR 21 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~ 21 (592)
++|+|++||||||+.+.|++.
T Consensus 19 i~i~G~~gsGKst~~~~l~~~ 39 (236)
T 1q3t_A 19 IAIDGPASSGKSTVAKIIAKD 39 (236)
T ss_dssp EEEECSSCSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 479999999999999999975
No 309
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=94.68 E-value=0.012 Score=54.60 Aligned_cols=22 Identities=27% Similarity=0.468 Sum_probs=19.9
Q ss_pred CEEECCCCCcHHHHHHHHhCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRI 22 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~ 22 (592)
++|+|++|+|||||++.+.+..
T Consensus 10 i~v~G~~~~GKSsli~~l~~~~ 31 (208)
T 3clv_A 10 TVLLGESSVGKSSIVLRLTKDT 31 (208)
T ss_dssp EEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHHhCc
Confidence 4799999999999999999864
No 310
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=94.66 E-value=0.012 Score=53.12 Aligned_cols=21 Identities=48% Similarity=0.646 Sum_probs=18.9
Q ss_pred CEEECCCCCcHHHHHHHHhCC
Q 048028 1 MAILGASGAGKTTLMDALAGR 21 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~ 21 (592)
++|+|++|+|||||++.+.+.
T Consensus 10 i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 10 ILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 479999999999999999764
No 311
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=94.63 E-value=0.013 Score=56.91 Aligned_cols=24 Identities=33% Similarity=0.617 Sum_probs=21.2
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRIEK 24 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~ 24 (592)
++|.|++||||||+++.|+..+..
T Consensus 29 i~i~G~~GsGKsT~~~~l~~~l~~ 52 (229)
T 4eaq_A 29 ITFEGPEGSGKTTVINEVYHRLVK 52 (229)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHTT
T ss_pred EEEEcCCCCCHHHHHHHHHHHHhc
Confidence 468999999999999999988753
No 312
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=94.62 E-value=0.012 Score=54.59 Aligned_cols=22 Identities=32% Similarity=0.629 Sum_probs=19.7
Q ss_pred CEEECCCCCcHHHHHHHHhCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRI 22 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~ 22 (592)
++|+|++|+|||||++.+.+..
T Consensus 28 i~v~G~~~~GKSsLi~~l~~~~ 49 (193)
T 2oil_A 28 VVLIGESGVGKTNLLSRFTRNE 49 (193)
T ss_dssp EEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEECcCCCCHHHHHHHHhcCC
Confidence 4799999999999999999754
No 313
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=94.61 E-value=0.012 Score=52.65 Aligned_cols=21 Identities=33% Similarity=0.474 Sum_probs=18.9
Q ss_pred CEEECCCCCcHHHHHHHHhCC
Q 048028 1 MAILGASGAGKTTLMDALAGR 21 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~ 21 (592)
++|+|++|+|||||++.+.+.
T Consensus 3 i~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 479999999999999999764
No 314
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=94.61 E-value=0.012 Score=54.10 Aligned_cols=22 Identities=32% Similarity=0.483 Sum_probs=19.5
Q ss_pred CEEECCCCCcHHHHHHHHhCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRI 22 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~ 22 (592)
++|+|++|+|||||++.+.+..
T Consensus 14 i~v~G~~~~GKSsli~~l~~~~ 35 (195)
T 3bc1_A 14 FLALGDSGVGKTSVLYQYTDGK 35 (195)
T ss_dssp EEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHhcCC
Confidence 4799999999999999999753
No 315
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.59 E-value=0.0085 Score=54.91 Aligned_cols=20 Identities=50% Similarity=0.675 Sum_probs=18.2
Q ss_pred CEEECCCCCcHHHHHHHHhC
Q 048028 1 MAILGASGAGKTTLMDALAG 20 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g 20 (592)
++|+|++|+|||||++.+.+
T Consensus 21 i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 21 ILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp EEEEEETTSSHHHHHHHTCC
T ss_pred EEEECCCCCCHHHHHHHHhc
Confidence 47999999999999999875
No 316
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=94.58 E-value=0.014 Score=55.61 Aligned_cols=21 Identities=29% Similarity=0.608 Sum_probs=18.7
Q ss_pred CEEECCCCCcHHHHHHHHhCC
Q 048028 1 MAILGASGAGKTTLMDALAGR 21 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~ 21 (592)
++|.||+||||||+.+.|+..
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3fb4_A 3 IVLMGLPGAGKGTQAEQIIEK 23 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 478999999999999999754
No 317
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=94.57 E-value=0.014 Score=54.42 Aligned_cols=22 Identities=32% Similarity=0.548 Sum_probs=19.7
Q ss_pred CEEECCCCCcHHHHHHHHhCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRI 22 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~ 22 (592)
++|.|++||||||+.+.|+..+
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l 24 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 4799999999999999998764
No 318
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=94.52 E-value=0.014 Score=59.17 Aligned_cols=22 Identities=41% Similarity=0.678 Sum_probs=20.1
Q ss_pred CEEECCCCCcHHHHHHHHhCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRI 22 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~ 22 (592)
++|+|++|+|||||+|.|.|..
T Consensus 10 V~ivG~~nvGKSTLln~l~g~~ 31 (301)
T 1wf3_A 10 VAIVGKPNVGKSTLLNNLLGVK 31 (301)
T ss_dssp EEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEECCCCCCHHHHHHHHhCCc
Confidence 5899999999999999999863
No 319
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=94.52 E-value=0.014 Score=60.94 Aligned_cols=18 Identities=39% Similarity=0.855 Sum_probs=16.9
Q ss_pred EEECCCCCcHHHHHHHHh
Q 048028 2 AILGASGAGKTTLMDALA 19 (592)
Q Consensus 2 aI~GpsGaGKSTLL~~l~ 19 (592)
+|.|||||||||+|.+|.
T Consensus 29 vi~G~NGaGKT~ileAI~ 46 (371)
T 3auy_A 29 AIIGENGSGKSSIFEAVF 46 (371)
T ss_dssp EEEECTTSSHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHH
Confidence 699999999999999986
No 320
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=94.49 E-value=0.015 Score=53.66 Aligned_cols=23 Identities=22% Similarity=0.345 Sum_probs=20.7
Q ss_pred CEEECCCCCcHHHHHHHHhCCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRIE 23 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~ 23 (592)
++|+|++|+|||||++.+.|...
T Consensus 17 i~vvG~~~~GKssL~~~l~~~~~ 39 (198)
T 3t1o_A 17 IVYYGPGLSGKTTNLKWIYSKVP 39 (198)
T ss_dssp EEEECSTTSSHHHHHHHHHHTSC
T ss_pred EEEECCCCCCHHHHHHHHHhhcc
Confidence 47999999999999999998754
No 321
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=94.49 E-value=0.013 Score=58.46 Aligned_cols=22 Identities=36% Similarity=0.578 Sum_probs=19.7
Q ss_pred CEEECCCCCcHHHHHHHHhCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRI 22 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~ 22 (592)
++|+|++|+|||||+|.|.|..
T Consensus 11 I~vvG~~g~GKSTLin~L~~~~ 32 (274)
T 3t5d_A 11 LMVVGESGLGKSTLINSLFLTD 32 (274)
T ss_dssp EEEEECTTSSHHHHHHHHSSSC
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 4799999999999999998763
No 322
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=94.48 E-value=0.014 Score=53.24 Aligned_cols=22 Identities=32% Similarity=0.542 Sum_probs=19.6
Q ss_pred CEEECCCCCcHHHHHHHHhCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRI 22 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~ 22 (592)
++|+|++|+|||||++.+.+..
T Consensus 13 i~v~G~~~~GKssli~~l~~~~ 34 (180)
T 2g6b_A 13 VMLVGDSGVGKTCLLVRFKDGA 34 (180)
T ss_dssp EEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEECcCCCCHHHHHHHHHhCC
Confidence 4799999999999999998754
No 323
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=94.47 E-value=0.013 Score=53.27 Aligned_cols=21 Identities=29% Similarity=0.507 Sum_probs=19.0
Q ss_pred CEEECCCCCcHHHHHHHHhCC
Q 048028 1 MAILGASGAGKTTLMDALAGR 21 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~ 21 (592)
++|+|++|+|||||++.+.+.
T Consensus 17 i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 17 LVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 479999999999999999865
No 324
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=94.45 E-value=0.014 Score=53.38 Aligned_cols=22 Identities=23% Similarity=0.385 Sum_probs=19.6
Q ss_pred CEEECCCCCcHHHHHHHHhCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRI 22 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~ 22 (592)
++|+|++|+|||||++.+.+..
T Consensus 21 i~v~G~~~~GKSsli~~l~~~~ 42 (187)
T 2a9k_A 21 VIMVGSGGVGKSALTLQFMYDE 42 (187)
T ss_dssp EEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHhhCC
Confidence 4799999999999999998753
No 325
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=94.45 E-value=0.016 Score=54.66 Aligned_cols=23 Identities=35% Similarity=0.524 Sum_probs=20.1
Q ss_pred CEEECCCCCcHHHHHHHHhCCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRIE 23 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~ 23 (592)
++|.|++||||||+.+.|+..+.
T Consensus 7 I~i~G~~GsGKsT~~~~L~~~l~ 29 (213)
T 2plr_A 7 IAFEGIDGSGKSSQATLLKDWIE 29 (213)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEcCCCCCHHHHHHHHHHHHh
Confidence 47899999999999999997654
No 326
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=94.45 E-value=0.015 Score=55.32 Aligned_cols=22 Identities=27% Similarity=0.540 Sum_probs=19.1
Q ss_pred CEEECCCCCcHHHHHHHHhCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRI 22 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~ 22 (592)
++|.||+||||||+.+.|+..+
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 3 LVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 4789999999999999997643
No 327
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=94.44 E-value=0.014 Score=52.92 Aligned_cols=22 Identities=27% Similarity=0.570 Sum_probs=19.7
Q ss_pred CEEECCCCCcHHHHHHHHhCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRI 22 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~ 22 (592)
++|+|++|+|||||++.+.+..
T Consensus 18 i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 18 YIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHHcCC
Confidence 4799999999999999999764
No 328
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=94.44 E-value=0.014 Score=57.69 Aligned_cols=22 Identities=36% Similarity=0.575 Sum_probs=20.2
Q ss_pred CEEECCCCCcHHHHHHHHhCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRI 22 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~ 22 (592)
++|+|++|+|||||+|.|+|..
T Consensus 4 I~lvG~~n~GKSTL~n~L~g~~ 25 (256)
T 3iby_A 4 ALLIGNPNCGKTTLFNALTNAN 25 (256)
T ss_dssp EEEEESTTSSHHHHHHHHHTTS
T ss_pred EEEECCCCCCHHHHHHHHHCCC
Confidence 5899999999999999999973
No 329
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=94.43 E-value=0.016 Score=54.41 Aligned_cols=22 Identities=27% Similarity=0.317 Sum_probs=20.0
Q ss_pred CEEECCCCCcHHHHHHHHhCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRI 22 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~ 22 (592)
++|.|++||||||+.+.|+..+
T Consensus 7 I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 7 IVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp EEEECCTTSSHHHHHHHHHHTS
T ss_pred EEEEcCCCCCHHHHHHHHHHHH
Confidence 4799999999999999999875
No 330
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=94.42 E-value=0.014 Score=54.92 Aligned_cols=22 Identities=27% Similarity=0.498 Sum_probs=19.7
Q ss_pred CEEECCCCCcHHHHHHHHhCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRI 22 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~ 22 (592)
++|.|++||||||+.+.|+..+
T Consensus 5 i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 5 VTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHhc
Confidence 4799999999999999999753
No 331
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=94.39 E-value=0.015 Score=53.04 Aligned_cols=22 Identities=32% Similarity=0.555 Sum_probs=19.6
Q ss_pred CEEECCCCCcHHHHHHHHhCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRI 22 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~ 22 (592)
++|+|++|+|||||++.+.+..
T Consensus 15 i~v~G~~~~GKSsli~~l~~~~ 36 (181)
T 2efe_B 15 LVLLGDVGAGKSSLVLRFVKDQ 36 (181)
T ss_dssp EEEECCTTSCHHHHHHHHHHCC
T ss_pred EEEECcCCCCHHHHHHHHHcCC
Confidence 4799999999999999998764
No 332
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=94.39 E-value=0.017 Score=52.67 Aligned_cols=21 Identities=38% Similarity=0.531 Sum_probs=18.9
Q ss_pred CEEECCCCCcHHHHHHHHhCC
Q 048028 1 MAILGASGAGKTTLMDALAGR 21 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~ 21 (592)
++|.|++||||||+.+.|+..
T Consensus 5 I~l~G~~GsGKsT~a~~La~~ 25 (173)
T 1e6c_A 5 IFMVGARGCGMTTVGRELARA 25 (173)
T ss_dssp EEEESCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 478999999999999999865
No 333
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=94.39 E-value=0.016 Score=53.29 Aligned_cols=22 Identities=36% Similarity=0.640 Sum_probs=19.8
Q ss_pred CEEECCCCCcHHHHHHHHhCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRI 22 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~ 22 (592)
++|+|++|+|||||++.+.+..
T Consensus 21 i~v~G~~~~GKssl~~~l~~~~ 42 (186)
T 1ksh_A 21 LLMLGLDNAGKTTILKKFNGED 42 (186)
T ss_dssp EEEECSTTSSHHHHHHHHTTCC
T ss_pred EEEECCCCCCHHHHHHHHhcCC
Confidence 4799999999999999999764
No 334
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=94.38 E-value=0.011 Score=62.10 Aligned_cols=45 Identities=18% Similarity=0.178 Sum_probs=38.1
Q ss_pred CCcEEEEeCCCCCCC---HHHHHHHHHHHHHHHHcCCEEEEEecCChh
Q 048028 129 DPILLFLDEPTSGLD---STSAFMVVNVLQRIAKSGSIVIMSIHQPSY 173 (592)
Q Consensus 129 ~p~lllLDEPtsgLD---~~~~~~i~~~l~~la~~g~tvi~~~H~~~~ 173 (592)
.|.++++||-=.=++ +..+..+.+.+++.++.|..++++||.|+.
T Consensus 262 ~~~~i~iDEa~~~~~~~~~~~~~~l~~~~~~~Rk~g~~~~~~tQ~~~d 309 (392)
T 4ag6_A 262 ERTVLVVDEAWMLVDPQTPQAIAFLRDTSKRIRKYNGSLIVISQNVID 309 (392)
T ss_dssp TTCEEEETTGGGGCCTTCTHHHHHHHHHHHHGGGGTCEEEEEESCGGG
T ss_pred ccEEEEEecHHHHhCcCchHHHHHHHHHHHHhhhhCeEEEEEcCCHHH
Confidence 588999999988774 667778888888888889999999999973
No 335
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=94.38 E-value=0.015 Score=53.78 Aligned_cols=22 Identities=32% Similarity=0.539 Sum_probs=19.7
Q ss_pred CEEECCCCCcHHHHHHHHhCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRI 22 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~ 22 (592)
++++|++|+|||||++.+.+..
T Consensus 24 i~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 24 LVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEECcCCCCHHHHHHHHHcCC
Confidence 4799999999999999998764
No 336
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=94.35 E-value=0.013 Score=54.95 Aligned_cols=21 Identities=38% Similarity=0.726 Sum_probs=19.0
Q ss_pred CEEECCCCCcHHHHHHHHhCC
Q 048028 1 MAILGASGAGKTTLMDALAGR 21 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~ 21 (592)
++|+|++|+|||||++.+.|.
T Consensus 26 i~vvG~~~vGKSsLi~~l~~~ 46 (195)
T 3cbq_A 26 VMLVGESGVGKSTLAGTFGGL 46 (195)
T ss_dssp EEEECSTTSSHHHHHHHTCCE
T ss_pred EEEECCCCCCHHHHHHHHHhc
Confidence 479999999999999999764
No 337
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.29 E-value=0.016 Score=55.05 Aligned_cols=22 Identities=32% Similarity=0.514 Sum_probs=19.8
Q ss_pred CEEECCCCCcHHHHHHHHhCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRI 22 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~ 22 (592)
++|+|++|+|||||++.+.+..
T Consensus 15 i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 15 IIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEECCCCCCHHHHHHHHhcCC
Confidence 4799999999999999999864
No 338
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=94.29 E-value=0.016 Score=56.91 Aligned_cols=22 Identities=18% Similarity=0.502 Sum_probs=20.0
Q ss_pred CEEECCCCCcHHHHHHHHhCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRI 22 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~ 22 (592)
++|+|++|+|||||++.|.|..
T Consensus 25 I~lvG~~g~GKStl~n~l~~~~ 46 (260)
T 2xtp_A 25 IILVGKTGTGKSAAGNSILRKQ 46 (260)
T ss_dssp EEEEECTTSCHHHHHHHHHTSC
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 4799999999999999999864
No 339
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=94.28 E-value=0.016 Score=58.46 Aligned_cols=31 Identities=23% Similarity=0.447 Sum_probs=23.9
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECC
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNG 35 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g 35 (592)
+.|.|||||||||+.+.|+...+ .|.+.+++
T Consensus 36 ivl~G~sGsGKSTla~~L~~~~~----~~~~~Is~ 66 (287)
T 1gvn_B 36 FLLGGQPGSGKTSLRSAIFEETQ----GNVIVIDN 66 (287)
T ss_dssp EEEECCTTSCTHHHHHHHHHHTT----TCCEEECT
T ss_pred EEEECCCCCCHHHHHHHHHHHhC----CCeEEEec
Confidence 36899999999999999987543 14566665
No 340
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=94.28 E-value=0.016 Score=54.24 Aligned_cols=22 Identities=45% Similarity=0.745 Sum_probs=19.8
Q ss_pred CEEECCCCCcHHHHHHHHhCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRI 22 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~ 22 (592)
++|+|++|+|||||++.+.+..
T Consensus 11 i~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 11 VIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp EEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEECcCCCCHHHHHHHHHcCC
Confidence 4799999999999999998764
No 341
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=94.27 E-value=0.016 Score=54.15 Aligned_cols=22 Identities=23% Similarity=0.385 Sum_probs=19.5
Q ss_pred CEEECCCCCcHHHHHHHHhCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRI 22 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~ 22 (592)
++|+|++|+|||||++.+.+..
T Consensus 17 i~v~G~~~~GKSsli~~l~~~~ 38 (206)
T 2bov_A 17 VIMVGSGGVGKSALTLQFMYDE 38 (206)
T ss_dssp EEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHHhCC
Confidence 4799999999999999998653
No 342
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=94.26 E-value=0.018 Score=53.31 Aligned_cols=21 Identities=33% Similarity=0.564 Sum_probs=18.6
Q ss_pred CEEECCCCCcHHHHHHHHhCC
Q 048028 1 MAILGASGAGKTTLMDALAGR 21 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~ 21 (592)
++|.|++||||||+.+.|+..
T Consensus 6 I~l~G~~GsGKsT~a~~L~~~ 26 (196)
T 1tev_A 6 VFVLGGPGAGKGTQCARIVEK 26 (196)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 479999999999999999854
No 343
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=94.26 E-value=0.015 Score=53.40 Aligned_cols=22 Identities=23% Similarity=0.602 Sum_probs=19.6
Q ss_pred CEEECCCCCcHHHHHHHHhCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRI 22 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~ 22 (592)
++|+|++|+|||||++.+.+..
T Consensus 13 i~v~G~~~~GKSsli~~l~~~~ 34 (186)
T 2bme_A 13 FLVIGNAGTGKSCLLHQFIEKK 34 (186)
T ss_dssp EEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEECCCCCCHHHHHHHHHcCC
Confidence 4799999999999999998764
No 344
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=94.25 E-value=0.016 Score=53.57 Aligned_cols=22 Identities=27% Similarity=0.457 Sum_probs=19.7
Q ss_pred CEEECCCCCcHHHHHHHHhCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRI 22 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~ 22 (592)
++|+|++|+|||||++.+.+..
T Consensus 25 i~vvG~~~~GKSsli~~l~~~~ 46 (189)
T 2gf9_A 25 LLLIGNSSVGKTSFLFRYADDS 46 (189)
T ss_dssp EEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHHcCC
Confidence 4799999999999999998764
No 345
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=94.25 E-value=0.018 Score=58.59 Aligned_cols=22 Identities=41% Similarity=0.705 Sum_probs=20.2
Q ss_pred CEEECCCCCcHHHHHHHHhCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRI 22 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~ 22 (592)
++|+|++|+|||||+|.|.|..
T Consensus 13 v~ivG~~nvGKSTLin~l~g~~ 34 (308)
T 3iev_A 13 VAIVGKPNVGKSTLLNNLLGTK 34 (308)
T ss_dssp EEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEECCCCCcHHHHHHHHhCCC
Confidence 5899999999999999999864
No 346
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=94.24 E-value=0.019 Score=52.31 Aligned_cols=22 Identities=23% Similarity=0.370 Sum_probs=19.4
Q ss_pred CEEECCCCCcHHHHHHHHhCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRI 22 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~ 22 (592)
++|+|++|+|||||++.+.+..
T Consensus 11 i~v~G~~~~GKssl~~~~~~~~ 32 (182)
T 3bwd_D 11 CVTVGDGAVGKTCLLISYTSNT 32 (182)
T ss_dssp EEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHhcCC
Confidence 4799999999999999998653
No 347
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=94.23 E-value=0.016 Score=60.69 Aligned_cols=21 Identities=38% Similarity=0.654 Sum_probs=19.5
Q ss_pred CEEECCCCCcHHHHHHHHhCC
Q 048028 1 MAILGASGAGKTTLMDALAGR 21 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~ 21 (592)
++|+|++|+|||||+|.|++.
T Consensus 4 v~IVG~pnvGKSTL~n~L~~~ 24 (368)
T 2dby_A 4 VGIVGLPNVGKSTLFNALTRA 24 (368)
T ss_dssp EEEECCSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 589999999999999999985
No 348
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=94.23 E-value=0.017 Score=53.76 Aligned_cols=21 Identities=24% Similarity=0.570 Sum_probs=18.9
Q ss_pred CEEECCCCCcHHHHHHHHhCC
Q 048028 1 MAILGASGAGKTTLMDALAGR 21 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~ 21 (592)
++|.|++||||||+.+.|+..
T Consensus 12 I~l~G~~GsGKsT~~~~La~~ 32 (196)
T 2c95_A 12 IFVVGGPGSGKGTQCEKIVQK 32 (196)
T ss_dssp EEEEECTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 479999999999999999864
No 349
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=94.22 E-value=0.019 Score=53.31 Aligned_cols=22 Identities=36% Similarity=0.481 Sum_probs=19.5
Q ss_pred CEEECCCCCcHHHHHHHHhCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRI 22 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~ 22 (592)
++|.|++||||||+.+.|+..+
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 3 IAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 4799999999999999998754
No 350
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=94.22 E-value=0.02 Score=52.06 Aligned_cols=21 Identities=24% Similarity=0.370 Sum_probs=18.9
Q ss_pred CEEECCCCCcHHHHHHHHhCC
Q 048028 1 MAILGASGAGKTTLMDALAGR 21 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~ 21 (592)
++|.|++||||||+.+.|+..
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~ 23 (168)
T 2pt5_A 3 IYLIGFMCSGKSTVGSLLSRS 23 (168)
T ss_dssp EEEESCTTSCHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 479999999999999999864
No 351
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=94.20 E-value=0.017 Score=53.50 Aligned_cols=22 Identities=32% Similarity=0.591 Sum_probs=19.7
Q ss_pred CEEECCCCCcHHHHHHHHhCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRI 22 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~ 22 (592)
++|+|++|+|||||++.+.+..
T Consensus 19 i~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 19 LLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp EEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEECcCCCCHHHHHHHHHcCC
Confidence 4799999999999999999754
No 352
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=94.19 E-value=0.019 Score=56.78 Aligned_cols=22 Identities=41% Similarity=0.705 Sum_probs=20.0
Q ss_pred CEEECCCCCcHHHHHHHHhCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRI 22 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~ 22 (592)
++|+|++|+|||||++.|+|..
T Consensus 8 I~lvG~~nvGKTsL~n~l~g~~ 29 (258)
T 3a1s_A 8 VALAGCPNVGKTSLFNALTGTK 29 (258)
T ss_dssp EEEECCTTSSHHHHHHHHHTTC
T ss_pred EEEECCCCCCHHHHHHHHHCCC
Confidence 4899999999999999999863
No 353
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=94.18 E-value=0.02 Score=53.58 Aligned_cols=22 Identities=32% Similarity=0.471 Sum_probs=19.8
Q ss_pred CEEECCCCCcHHHHHHHHhCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRI 22 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~ 22 (592)
++|+|++|+|||||++.+.+..
T Consensus 11 i~v~G~~~~GKSsli~~l~~~~ 32 (203)
T 1zbd_A 11 ILIIGNSSVGKTSFLFRYADDS 32 (203)
T ss_dssp EEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEECCCCCCHHHHHHHHhcCC
Confidence 4799999999999999999864
No 354
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.18 E-value=0.016 Score=53.84 Aligned_cols=21 Identities=29% Similarity=0.583 Sum_probs=19.1
Q ss_pred CEEECCCCCcHHHHHHHHhCC
Q 048028 1 MAILGASGAGKTTLMDALAGR 21 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~ 21 (592)
++|+|++|+|||||++.+.+.
T Consensus 11 i~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 11 VVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp EEEEECTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCcHHHHHHHHHcC
Confidence 479999999999999999874
No 355
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=94.18 E-value=0.018 Score=53.79 Aligned_cols=23 Identities=13% Similarity=0.449 Sum_probs=20.4
Q ss_pred CEEECCCCCcHHHHHHHHhCCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRIE 23 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~ 23 (592)
++|+|++|+|||||++.+.+...
T Consensus 23 i~~vG~~~vGKTsLi~~l~~~~~ 45 (196)
T 3llu_A 23 ILLMGLRRSGKSSIQKVVFHKMS 45 (196)
T ss_dssp EEEEESTTSSHHHHHHHHHSCCC
T ss_pred EEEECCCCCCHHHHHHHHHhcCC
Confidence 47999999999999999998654
No 356
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=94.16 E-value=0.011 Score=62.94 Aligned_cols=37 Identities=24% Similarity=0.196 Sum_probs=29.9
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecC
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLE 39 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~ 39 (592)
++++|+||+||||++..|++.+.+. .|+|.+.+.+..
T Consensus 101 i~i~G~~GsGKTT~~~~LA~~l~~~--g~~Vllvd~D~~ 137 (425)
T 2ffh_A 101 WFLVGLQGSGKTTTAAKLALYYKGK--GRRPLLVAADTQ 137 (425)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHTT--TCCEEEEECCSS
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEeecccc
Confidence 3688999999999999999988643 478888766543
No 357
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=94.15 E-value=0.018 Score=53.57 Aligned_cols=22 Identities=36% Similarity=0.724 Sum_probs=18.7
Q ss_pred CEEECCCCCcHHHHHHHHhCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRI 22 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~ 22 (592)
++|+|++|+|||||++.+.+..
T Consensus 29 i~vvG~~~~GKSsLi~~l~~~~ 50 (192)
T 2il1_A 29 VIIIGSRGVGKTSLMERFTDDT 50 (192)
T ss_dssp EEEECSTTSSHHHHHHHHCC--
T ss_pred EEEECCCCCCHHHHHHHHhcCC
Confidence 4799999999999999998753
No 358
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=94.15 E-value=0.018 Score=58.20 Aligned_cols=22 Identities=23% Similarity=0.714 Sum_probs=20.3
Q ss_pred CEEECCCCCcHHHHHHHHhCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRI 22 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~ 22 (592)
++|+|++|+|||||+|.|.|..
T Consensus 27 I~vvG~~~~GKSTlln~l~g~~ 48 (315)
T 1jwy_B 27 IVVVGSQSSGKSSVLENIVGRD 48 (315)
T ss_dssp EEEEECSSSSHHHHHHHHHTSC
T ss_pred EEEEcCCCCCHHHHHHHHHCCC
Confidence 5899999999999999999974
No 359
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=94.14 E-value=0.016 Score=53.85 Aligned_cols=22 Identities=23% Similarity=0.537 Sum_probs=19.7
Q ss_pred CEEECCCCCcHHHHHHHHhCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRI 22 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~ 22 (592)
++|+|++|+|||||++.+.+..
T Consensus 26 i~vvG~~~~GKSsli~~l~~~~ 47 (192)
T 2fg5_A 26 VCLLGDTGVGKSSIVCRFVQDH 47 (192)
T ss_dssp EEEEECTTSSHHHHHHHHHHCC
T ss_pred EEEECcCCCCHHHHHHHHhcCC
Confidence 4799999999999999998764
No 360
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=94.14 E-value=0.016 Score=53.42 Aligned_cols=22 Identities=32% Similarity=0.570 Sum_probs=19.6
Q ss_pred CEEECCCCCcHHHHHHHHhCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRI 22 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~ 22 (592)
++|+|++|+|||||++.+.+..
T Consensus 10 i~v~G~~~vGKSsli~~l~~~~ 31 (184)
T 1m7b_A 10 IVVVGDSQCGKTALLHVFAKDC 31 (184)
T ss_dssp EEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHhcCC
Confidence 4799999999999999998753
No 361
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=94.13 E-value=0.018 Score=52.76 Aligned_cols=22 Identities=27% Similarity=0.575 Sum_probs=19.5
Q ss_pred CEEECCCCCcHHHHHHHHhCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRI 22 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~ 22 (592)
++|+|++|+|||||++.+.+..
T Consensus 21 i~v~G~~~~GKSsl~~~l~~~~ 42 (183)
T 3kkq_A 21 LVVVGDGGVGKSALTIQFFQKI 42 (183)
T ss_dssp EEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHHhCC
Confidence 4799999999999999998753
No 362
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=94.13 E-value=0.019 Score=53.66 Aligned_cols=22 Identities=32% Similarity=0.584 Sum_probs=19.3
Q ss_pred CEEECCCCCcHHHHHHHHhCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRI 22 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~ 22 (592)
++|.|++||||||+.+.|+..+
T Consensus 15 I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 15 IFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp EEEEECTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 4799999999999999998653
No 363
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=94.12 E-value=0.018 Score=54.38 Aligned_cols=22 Identities=23% Similarity=0.323 Sum_probs=19.4
Q ss_pred CEEECCCCCcHHHHHHHHhCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRI 22 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~ 22 (592)
++|.|++||||||+.+.|+..+
T Consensus 13 I~l~G~~GsGKST~~~~L~~~l 34 (212)
T 2wwf_A 13 IVFEGLDRSGKSTQSKLLVEYL 34 (212)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHHHH
Confidence 4799999999999999998653
No 364
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=94.10 E-value=0.018 Score=52.60 Aligned_cols=21 Identities=24% Similarity=0.431 Sum_probs=18.9
Q ss_pred CEEECCCCCcHHHHHHHHhCC
Q 048028 1 MAILGASGAGKTTLMDALAGR 21 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~ 21 (592)
++|+|++|+|||||++.+.+.
T Consensus 8 i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 8 CVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 479999999999999999864
No 365
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=94.09 E-value=0.018 Score=53.81 Aligned_cols=21 Identities=38% Similarity=0.767 Sum_probs=19.0
Q ss_pred CEEECCCCCcHHHHHHHHhCC
Q 048028 1 MAILGASGAGKTTLMDALAGR 21 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~ 21 (592)
++|+|++|+|||||++.+.|.
T Consensus 9 v~lvG~~~vGKSsL~~~~~~~ 29 (192)
T 2cjw_A 9 VVLIGEQGVGKSTLANIFAGV 29 (192)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 479999999999999999863
No 366
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=94.09 E-value=0.019 Score=57.32 Aligned_cols=22 Identities=36% Similarity=0.724 Sum_probs=20.1
Q ss_pred CEEECCCCCcHHHHHHHHhCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRI 22 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~ 22 (592)
++|+|.+|+|||||+|.|+|..
T Consensus 6 I~lvG~~n~GKSTLin~l~g~~ 27 (274)
T 3i8s_A 6 IGLIGNPNSGKTTLFNQLTGSR 27 (274)
T ss_dssp EEEEECTTSSHHHHHHHHHTTC
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 4899999999999999999873
No 367
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=94.06 E-value=0.54 Score=50.87 Aligned_cols=68 Identities=18% Similarity=0.139 Sum_probs=44.2
Q ss_pred HHHHHHHHh--hCCcEEEEeCCCCCCC-------H-HHHHHHHHHHHHHHHc-CCEEEEEecCCh---------------
Q 048028 119 RVSIGIHII--HDPILLFLDEPTSGLD-------S-TSAFMVVNVLQRIAKS-GSIVIMSIHQPS--------------- 172 (592)
Q Consensus 119 Rv~ia~~L~--~~p~lllLDEPtsgLD-------~-~~~~~i~~~l~~la~~-g~tvi~~~H~~~--------------- 172 (592)
-+..++.++ .+|+++++|=-+ .+. . ....+++..|++++++ +.+||+++|-..
T Consensus 342 i~~~i~~~~~~~~~~lvVID~l~-~l~~~~~~~~~~~~~~~~~~~Lk~lak~~~i~vi~~~q~~r~~~~~~~~~~~~p~l 420 (503)
T 1q57_A 342 LLAKLAYMRSGLGCDVIILDHIS-IVVSASGESDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSI 420 (503)
T ss_dssp HHHHHHHHHHTTCCSEEEEECTT-CCCSCCSCCCHHHHHHHHHHHHHHHHHHHTCEEEEEEECCCCSSSSCSTTCCCCCS
T ss_pred HHHHHHHHHHhcCCCEEEEccch-hcCCCCCCCCHHHHHHHHHHHHHHHHHHHCCeEEEEEcCCchhccCccccCCCCCh
Confidence 344455554 469999999543 221 1 2234677788888875 889999888542
Q ss_pred ------hHHHhhhceEEEecC
Q 048028 173 ------YRILSLLDRLIILSH 187 (592)
Q Consensus 173 ------~~i~~~~D~v~ll~~ 187 (592)
..+...+|-|+.|..
T Consensus 421 ~dlr~s~~ie~~aD~vi~l~r 441 (503)
T 1q57_A 421 TDLRGSGALRQLSDTIIALER 441 (503)
T ss_dssp SSCSSSSHHHHHCSEEEEEEE
T ss_pred hhhccchHhhecCcEEEEEEe
Confidence 135567888888853
No 368
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=94.05 E-value=0.019 Score=53.06 Aligned_cols=21 Identities=29% Similarity=0.483 Sum_probs=19.0
Q ss_pred CEEECCCCCcHHHHHHHHhCC
Q 048028 1 MAILGASGAGKTTLMDALAGR 21 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~ 21 (592)
++|+|++|+|||||++.+.+.
T Consensus 23 i~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 23 IIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 479999999999999999865
No 369
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=94.01 E-value=0.011 Score=56.17 Aligned_cols=22 Identities=36% Similarity=0.567 Sum_probs=20.2
Q ss_pred CEEECCCCCcHHHHHHHHhCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRI 22 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~ 22 (592)
++|+|++|+|||||++.|.|..
T Consensus 32 i~v~G~~~~GKSslin~l~~~~ 53 (223)
T 4dhe_A 32 IAFAGRSNAGKSTAINVLCNQK 53 (223)
T ss_dssp EEEEESCHHHHHHHHHHHTTCS
T ss_pred EEEEcCCCCCHHHHHHHHhCCC
Confidence 4799999999999999999874
No 370
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=93.99 E-value=0.021 Score=54.83 Aligned_cols=21 Identities=24% Similarity=0.542 Sum_probs=19.3
Q ss_pred CEEECCCCCcHHHHHHHHhCC
Q 048028 1 MAILGASGAGKTTLMDALAGR 21 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~ 21 (592)
++|+|++|+|||||++.+.+.
T Consensus 32 I~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 32 IILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp EEEECSTTSSHHHHHHHHTTT
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 479999999999999999875
No 371
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=93.99 E-value=0.021 Score=52.72 Aligned_cols=21 Identities=33% Similarity=0.518 Sum_probs=19.1
Q ss_pred CEEECCCCCcHHHHHHHHhCC
Q 048028 1 MAILGASGAGKTTLMDALAGR 21 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~ 21 (592)
++|+|++|+|||||++.+.+.
T Consensus 19 i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 19 VIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp EEEEESTTSSHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 479999999999999999964
No 372
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=93.99 E-value=0.02 Score=54.91 Aligned_cols=22 Identities=27% Similarity=0.415 Sum_probs=19.2
Q ss_pred CEEECCCCCcHHHHHHHHhCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRI 22 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~ 22 (592)
+.|+|++||||||+.+.|+..+
T Consensus 8 I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 8 VMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 3689999999999999998653
No 373
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=93.99 E-value=0.022 Score=52.64 Aligned_cols=22 Identities=32% Similarity=0.564 Sum_probs=19.3
Q ss_pred CEEECCCCCcHHHHHHHHhCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRI 22 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~ 22 (592)
++|+|++||||||+-+.|+..+
T Consensus 5 I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 5 AVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 4799999999999999998653
No 374
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=93.98 E-value=0.016 Score=53.62 Aligned_cols=22 Identities=32% Similarity=0.480 Sum_probs=19.9
Q ss_pred CEEECCCCCcHHHHHHHHhCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRI 22 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~ 22 (592)
++|+|++|+|||||++.+.+..
T Consensus 24 i~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 24 VLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp EEEEECTTSSHHHHHHHTSCGG
T ss_pred EEEECCCCCCHHHHHHHHhcCC
Confidence 4799999999999999998864
No 375
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=93.98 E-value=0.021 Score=53.59 Aligned_cols=22 Identities=23% Similarity=0.587 Sum_probs=18.6
Q ss_pred CEEECCCCCcHHHHHHHHhCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRI 22 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~ 22 (592)
++|+|++|+|||||++.+.+..
T Consensus 28 i~v~G~~~~GKSsLi~~l~~~~ 49 (200)
T 2o52_A 28 FLVIGSAGTGKSCLLHQFIENK 49 (200)
T ss_dssp EEEEESTTSSHHHHHHHHHC--
T ss_pred EEEECcCCCCHHHHHHHHHhCC
Confidence 4799999999999999998753
No 376
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=93.98 E-value=0.035 Score=52.48 Aligned_cols=22 Identities=36% Similarity=0.533 Sum_probs=19.8
Q ss_pred CEEECCCCCcHHHHHHHHhCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRI 22 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~ 22 (592)
++|+|++|+|||||++.+.+..
T Consensus 28 i~vvG~~~~GKSsLi~~l~~~~ 49 (217)
T 2f7s_A 28 LLALGDSGVGKTTFLYRYTDNK 49 (217)
T ss_dssp EEEESCTTSSHHHHHHHHHCSC
T ss_pred EEEECcCCCCHHHHHHHHhcCC
Confidence 4799999999999999999764
No 377
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=93.97 E-value=0.021 Score=52.92 Aligned_cols=22 Identities=23% Similarity=0.448 Sum_probs=19.8
Q ss_pred CEEECCCCCcHHHHHHHHhCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRI 22 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~ 22 (592)
++|+|++|+|||||++.+.+..
T Consensus 20 i~v~G~~~~GKSsl~~~l~~~~ 41 (199)
T 4bas_A 20 VVMCGLDNSGKTTIINQVKPAQ 41 (199)
T ss_dssp EEEECCTTSCHHHHHHHHSCCC
T ss_pred EEEECCCCCCHHHHHHHHhcCC
Confidence 4799999999999999998764
No 378
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=93.96 E-value=0.018 Score=53.94 Aligned_cols=22 Identities=32% Similarity=0.409 Sum_probs=19.9
Q ss_pred CEEECCCCCcHHHHHHHHhCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRI 22 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~ 22 (592)
++|+|++|+|||||++.+.+..
T Consensus 27 i~vvG~~~~GKSsli~~l~~~~ 48 (201)
T 3oes_A 27 VVILGYRCVGKTSLAHQFVEGE 48 (201)
T ss_dssp EEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCcCHHHHHHHHHhCC
Confidence 4799999999999999999764
No 379
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=93.94 E-value=0.041 Score=56.17 Aligned_cols=57 Identities=16% Similarity=0.186 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHH--h--hCCcEEEEeCCCCCC-----CH----------HHHHHHHHHHHHH---HH-cCCEEEEEecCC
Q 048028 115 GERRRVSIGIHI--I--HDPILLFLDEPTSGL-----DS----------TSAFMVVNVLQRI---AK-SGSIVIMSIHQP 171 (592)
Q Consensus 115 GerqRv~ia~~L--~--~~p~lllLDEPtsgL-----D~----------~~~~~i~~~l~~l---a~-~g~tvi~~~H~~ 171 (592)
+|...+.++..+ + .+|+++++|--++=. +. ..++.+-+.|++| ++ .+.++|++-|-.
T Consensus 93 ~E~~~l~i~~~l~~i~~~~~~lvVIDSI~aL~~~~eieg~~gd~~~gsv~qaR~~s~~LrkL~~~ak~~~i~vi~tNQV~ 172 (333)
T 3io5_A 93 LEQLRIDMVNQLDAIERGEKVVVFIDSLGNLASKKETEDALNEKVVSDMTRAKTMKSLFRIVTPYFSTKNIPCIAINHTY 172 (333)
T ss_dssp HHHHHHHHHHHHHTCCTTCCEEEEEECSTTCBCC--------------CTHHHHHHHHHHHHHHHHHHTTCEEEEEEEC-
T ss_pred HHHHHHHHHHHHHHhhccCceEEEEecccccccchhccCccccccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEECCee
Confidence 455545566555 3 369999999776643 11 1334455555553 44 588888888764
No 380
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=93.93 E-value=0.021 Score=53.00 Aligned_cols=22 Identities=27% Similarity=0.557 Sum_probs=19.6
Q ss_pred CEEECCCCCcHHHHHHHHhCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRI 22 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~ 22 (592)
++|+|++|+|||||++.+.+..
T Consensus 24 i~v~G~~~~GKSsli~~l~~~~ 45 (191)
T 2a5j_A 24 YIIIGDTGVGKSCLLLQFTDKR 45 (191)
T ss_dssp EEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEECcCCCCHHHHHHHHhcCC
Confidence 4799999999999999998753
No 381
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=93.91 E-value=0.019 Score=52.45 Aligned_cols=21 Identities=33% Similarity=0.479 Sum_probs=18.8
Q ss_pred CEEECCCCCcHHHHHHHHhCC
Q 048028 1 MAILGASGAGKTTLMDALAGR 21 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~ 21 (592)
++|+|++|+|||||++.+.+.
T Consensus 9 i~~~G~~~~GKSsli~~l~~~ 29 (181)
T 3t5g_A 9 IAILGYRSVGKSSLTIQFVEG 29 (181)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECcCCCCHHHHHHHHHcC
Confidence 479999999999999999854
No 382
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=93.90 E-value=0.021 Score=52.89 Aligned_cols=21 Identities=29% Similarity=0.572 Sum_probs=19.1
Q ss_pred CEEECCCCCcHHHHHHHHhCC
Q 048028 1 MAILGASGAGKTTLMDALAGR 21 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~ 21 (592)
++|+|++|+|||||++.+.+.
T Consensus 25 i~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 25 LTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 479999999999999999865
No 383
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=93.89 E-value=0.019 Score=53.23 Aligned_cols=22 Identities=32% Similarity=0.493 Sum_probs=19.7
Q ss_pred CEEECCCCCcHHHHHHHHhCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRI 22 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~ 22 (592)
++|+|++|+|||||++.+.+..
T Consensus 26 i~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 26 LLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEECCCCcCHHHHHHHHhcCC
Confidence 4799999999999999999764
No 384
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=93.89 E-value=0.0083 Score=60.86 Aligned_cols=36 Identities=33% Similarity=0.373 Sum_probs=27.5
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEec
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVL 38 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~ 38 (592)
++++|++|+||||++..|++...+. .|+|.+.+.+.
T Consensus 101 i~i~G~~G~GKTT~~~~la~~~~~~--g~~v~l~~~D~ 136 (297)
T 1j8m_F 101 IMLVGVQGTGKTTTAGKLAYFYKKK--GFKVGLVGADV 136 (297)
T ss_dssp EEEECSSCSSTTHHHHHHHHHHHHT--TCCEEEEECCC
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHC--CCeEEEEecCC
Confidence 3689999999999999999987532 36676655443
No 385
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=93.87 E-value=0.02 Score=52.69 Aligned_cols=21 Identities=33% Similarity=0.518 Sum_probs=19.3
Q ss_pred CEEECCCCCcHHHHHHHHhCC
Q 048028 1 MAILGASGAGKTTLMDALAGR 21 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~ 21 (592)
++|+|++|+|||||++.+.+.
T Consensus 24 i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 24 VIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp EEEEEETTSSHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 479999999999999999976
No 386
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=93.87 E-value=0.022 Score=54.85 Aligned_cols=22 Identities=32% Similarity=0.587 Sum_probs=19.2
Q ss_pred CEEECCCCCcHHHHHHHHhCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRI 22 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~ 22 (592)
++|.|++||||||+.+.|+..+
T Consensus 10 I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 10 AVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp EEEEECTTSSHHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 4689999999999999998653
No 387
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=93.86 E-value=0.019 Score=53.84 Aligned_cols=22 Identities=27% Similarity=0.572 Sum_probs=19.7
Q ss_pred CEEECCCCCcHHHHHHHHhCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRI 22 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~ 22 (592)
++|+|++|+|||||++.+.+..
T Consensus 11 i~v~G~~~~GKSsli~~l~~~~ 32 (206)
T 2bcg_Y 11 LLLIGNSGVGKSCLLLRFSDDT 32 (206)
T ss_dssp EEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEECCCCCCHHHHHHHHhcCC
Confidence 4799999999999999998754
No 388
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=93.86 E-value=0.068 Score=54.63 Aligned_cols=19 Identities=37% Similarity=0.590 Sum_probs=17.2
Q ss_pred EEECCCCCcHHHHHHHHhC
Q 048028 2 AILGASGAGKTTLMDALAG 20 (592)
Q Consensus 2 aI~GpsGaGKSTLL~~l~g 20 (592)
.|.||+|+|||||...++.
T Consensus 127 LI~GpPGsGKTtLAlqlA~ 145 (331)
T 2vhj_A 127 IVTGKGNSGKTPLVHALGE 145 (331)
T ss_dssp EEECSCSSSHHHHHHHHHH
T ss_pred EEEcCCCCCHHHHHHHHHH
Confidence 5899999999999999875
No 389
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=93.86 E-value=0.022 Score=53.08 Aligned_cols=22 Identities=32% Similarity=0.591 Sum_probs=19.6
Q ss_pred CEEECCCCCcHHHHHHHHhCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRI 22 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~ 22 (592)
++|+|++|+|||||++.+.+..
T Consensus 31 i~v~G~~~vGKSsli~~l~~~~ 52 (196)
T 2atv_A 31 LAIFGRAGVGKSALVVRFLTKR 52 (196)
T ss_dssp EEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHHhCC
Confidence 4799999999999999998753
No 390
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=93.86 E-value=0.022 Score=52.63 Aligned_cols=22 Identities=32% Similarity=0.613 Sum_probs=19.7
Q ss_pred CEEECCCCCcHHHHHHHHhCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRI 22 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~ 22 (592)
++|+|++|+|||||++.+.+..
T Consensus 18 i~v~G~~~~GKssli~~l~~~~ 39 (195)
T 1x3s_A 18 ILIIGESGVGKSSLLLRFTDDT 39 (195)
T ss_dssp EEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHHcCC
Confidence 4799999999999999998764
No 391
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=93.81 E-value=0.022 Score=52.87 Aligned_cols=22 Identities=27% Similarity=0.457 Sum_probs=19.7
Q ss_pred CEEECCCCCcHHHHHHHHhCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRI 22 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~ 22 (592)
++|+|++|+|||||++.+.+..
T Consensus 26 i~~vG~~~~GKSsl~~~l~~~~ 47 (194)
T 3reg_A 26 IVVVGDGAVGKTCLLLAFSKGE 47 (194)
T ss_dssp EEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEECcCCCCHHHHHHHHhcCC
Confidence 4799999999999999998764
No 392
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=93.81 E-value=0.022 Score=53.54 Aligned_cols=22 Identities=27% Similarity=0.533 Sum_probs=19.5
Q ss_pred CEEECCCCCcHHHHHHHHhCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRI 22 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~ 22 (592)
++|+|++|+|||||++.+.+..
T Consensus 23 i~v~G~~~~GKSsli~~l~~~~ 44 (213)
T 3cph_A 23 ILLIGDSGVGKSCLLVRFVEDK 44 (213)
T ss_dssp EEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEECCCCCCHHHHHHHHHhCC
Confidence 4799999999999999998653
No 393
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=93.81 E-value=0.022 Score=53.21 Aligned_cols=22 Identities=18% Similarity=0.413 Sum_probs=19.7
Q ss_pred CEEECCCCCcHHHHHHHHhCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRI 22 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~ 22 (592)
++|+|++|+|||||++.+.+..
T Consensus 31 i~v~G~~~~GKSsli~~l~~~~ 52 (199)
T 2p5s_A 31 IVLAGDAAVGKSSFLMRLCKNE 52 (199)
T ss_dssp EEEESSTTSSHHHHHHHHHHCC
T ss_pred EEEECcCCCCHHHHHHHHHhCC
Confidence 4799999999999999998764
No 394
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=93.80 E-value=0.025 Score=53.20 Aligned_cols=21 Identities=38% Similarity=0.596 Sum_probs=18.7
Q ss_pred CEEECCCCCcHHHHHHHHhCC
Q 048028 1 MAILGASGAGKTTLMDALAGR 21 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~ 21 (592)
++|.|++||||||+.+.|+..
T Consensus 18 I~l~G~~GsGKsT~~~~L~~~ 38 (203)
T 1ukz_A 18 IFVLGGPGAGKGTQCEKLVKD 38 (203)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 478999999999999999854
No 395
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=93.77 E-value=0.022 Score=57.04 Aligned_cols=22 Identities=32% Similarity=0.747 Sum_probs=20.3
Q ss_pred CEEECCCCCcHHHHHHHHhCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRI 22 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~ 22 (592)
++|+|++|+|||||+|.|.|..
T Consensus 29 i~vvG~~~~GKSSLln~l~g~~ 50 (299)
T 2aka_B 29 IAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEBTTSCHHHHHHHHHTSC
T ss_pred EEEEeCCCCCHHHHHHHHHCCC
Confidence 4899999999999999999874
No 396
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=93.76 E-value=0.024 Score=52.48 Aligned_cols=21 Identities=29% Similarity=0.498 Sum_probs=18.7
Q ss_pred CEEECCCCCcHHHHHHHHhCC
Q 048028 1 MAILGASGAGKTTLMDALAGR 21 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~ 21 (592)
++|.|++||||||+.+.|+..
T Consensus 9 I~l~G~~GsGKsT~~~~L~~~ 29 (194)
T 1qf9_A 9 VFVLGGPGSGKGTQCANIVRD 29 (194)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 478999999999999999864
No 397
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=93.74 E-value=0.021 Score=53.94 Aligned_cols=22 Identities=27% Similarity=0.640 Sum_probs=19.2
Q ss_pred CEEECCCCCcHHHHHHHHhCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRI 22 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~ 22 (592)
++|+|++|+|||||++.+.+..
T Consensus 29 i~lvG~~~vGKSsLi~~l~~~~ 50 (201)
T 2ew1_A 29 IVLIGNAGVGKTCLVRRFTQGL 50 (201)
T ss_dssp EEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEECcCCCCHHHHHHHHHhCC
Confidence 4799999999999999987653
No 398
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=93.73 E-value=0.024 Score=53.61 Aligned_cols=22 Identities=27% Similarity=0.407 Sum_probs=19.4
Q ss_pred CEEECCCCCcHHHHHHHHhCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRI 22 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~ 22 (592)
++|.|++||||||+.+.|+..+
T Consensus 12 I~l~G~~GsGKsT~~~~L~~~l 33 (215)
T 1nn5_A 12 IVLEGVDRAGKSTQSRKLVEAL 33 (215)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 4789999999999999998653
No 399
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=93.70 E-value=0.027 Score=52.96 Aligned_cols=21 Identities=43% Similarity=0.594 Sum_probs=18.8
Q ss_pred CEEECCCCCcHHHHHHHHhCC
Q 048028 1 MAILGASGAGKTTLMDALAGR 21 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~ 21 (592)
++|.|++||||||+.+.|+..
T Consensus 23 I~l~G~~GsGKST~a~~La~~ 43 (201)
T 2cdn_A 23 VLLLGPPGAGKGTQAVKLAEK 43 (201)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999864
No 400
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=93.69 E-value=0.028 Score=52.43 Aligned_cols=22 Identities=23% Similarity=0.365 Sum_probs=18.6
Q ss_pred CEEECCCCCcHHHHHHHHhCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRI 22 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~ 22 (592)
++|+|++|+|||||++.+.+..
T Consensus 23 i~~~G~~~~GKssl~~~l~~~~ 44 (201)
T 2q3h_A 23 CVLVGDGAVGKTSLVVSYTTNG 44 (201)
T ss_dssp EEEECSTTSSHHHHHHHHHC--
T ss_pred EEEECCCCCCHHHHHHHHHhCC
Confidence 4799999999999999998753
No 401
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=93.68 E-value=0.026 Score=53.16 Aligned_cols=22 Identities=23% Similarity=0.447 Sum_probs=19.8
Q ss_pred CEEECCCCCcHHHHHHHHhCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRI 22 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~ 22 (592)
++|+|++|+|||||++.+.+..
T Consensus 28 i~vvG~~~~GKSsli~~l~~~~ 49 (207)
T 2fv8_A 28 LVVVGDGACGKTCLLIVFSKDE 49 (207)
T ss_dssp EEEEECTTSSHHHHHHHHHHSS
T ss_pred EEEECcCCCCHHHHHHHHhcCC
Confidence 4799999999999999999764
No 402
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=93.66 E-value=0.019 Score=52.30 Aligned_cols=21 Identities=24% Similarity=0.567 Sum_probs=19.1
Q ss_pred CEEECCCCCcHHHHHHHHhCC
Q 048028 1 MAILGASGAGKTTLMDALAGR 21 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~ 21 (592)
++++|++|+|||||++.+.+.
T Consensus 10 i~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 10 LGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEECCGGGCHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 479999999999999999875
No 403
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=93.64 E-value=0.023 Score=58.33 Aligned_cols=22 Identities=41% Similarity=0.545 Sum_probs=20.1
Q ss_pred EEECCCCCcHHHHHHHHhCCCC
Q 048028 2 AILGASGAGKTTLMDALAGRIE 23 (592)
Q Consensus 2 aI~GpsGaGKSTLL~~l~g~~~ 23 (592)
.+.||+|+||||+++++++.+.
T Consensus 50 ll~Gp~G~GKTtla~~la~~l~ 71 (340)
T 1sxj_C 50 LFYGPPGTGKTSTIVALAREIY 71 (340)
T ss_dssp EEECSSSSSHHHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHHc
Confidence 6889999999999999999765
No 404
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=93.60 E-value=0.027 Score=53.48 Aligned_cols=21 Identities=33% Similarity=0.656 Sum_probs=18.7
Q ss_pred CEEECCCCCcHHHHHHHHhCC
Q 048028 1 MAILGASGAGKTTLMDALAGR 21 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~ 21 (592)
++|+|++|+|||||++.+.+.
T Consensus 37 i~vvG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 37 VVLVGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp EEEEECTTSSHHHHHHHHHC-
T ss_pred EEEECcCCCCHHHHHHHHHcC
Confidence 479999999999999999975
No 405
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=93.59 E-value=0.026 Score=52.30 Aligned_cols=22 Identities=41% Similarity=0.606 Sum_probs=19.3
Q ss_pred CEEECCCCCcHHHHHHHHhCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRI 22 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~ 22 (592)
++|+|++|+|||||++.+.+..
T Consensus 24 i~vvG~~~vGKTsLi~~l~~~~ 45 (187)
T 3c5c_A 24 LAILGRRGAGKSALTVKFLTKR 45 (187)
T ss_dssp EEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEECCCCCcHHHHHHHHHhCC
Confidence 4799999999999999988653
No 406
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=93.57 E-value=0.024 Score=53.95 Aligned_cols=22 Identities=45% Similarity=0.733 Sum_probs=19.4
Q ss_pred CEEECCCCCcHHHHHHHHhCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRI 22 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~ 22 (592)
++|+|++|+|||||++.|++..
T Consensus 33 i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 33 VNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp EEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHHHh
Confidence 4799999999999999998753
No 407
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=93.55 E-value=0.025 Score=52.72 Aligned_cols=21 Identities=33% Similarity=0.474 Sum_probs=18.9
Q ss_pred CEEECCCCCcHHHHHHHHhCC
Q 048028 1 MAILGASGAGKTTLMDALAGR 21 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~ 21 (592)
++|+|++|+|||||++.+.+.
T Consensus 32 i~v~G~~~vGKSsLi~~l~~~ 52 (192)
T 2b6h_A 32 ILMVGLDAAGKTTILYKLKLG 52 (192)
T ss_dssp EEEEESTTSSHHHHHHHHCSS
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 479999999999999999764
No 408
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=93.54 E-value=0.02 Score=52.71 Aligned_cols=22 Identities=36% Similarity=0.480 Sum_probs=15.2
Q ss_pred CEEECCCCCcHHHHHHHHhCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRI 22 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~ 22 (592)
+.|.|++||||||+.+.|+..+
T Consensus 8 I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 8 IWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp EEEECCC----CHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHhc
Confidence 3689999999999999998654
No 409
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=93.53 E-value=0.16 Score=48.64 Aligned_cols=53 Identities=21% Similarity=0.307 Sum_probs=43.8
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEec---------CChhHHHhhhceEEEec
Q 048028 129 DPILLFLDEPTSGLDSTSAFMVVNVLQRIAKSGSIVIMSIH---------QPSYRILSLLDRLIILS 186 (592)
Q Consensus 129 ~p~lllLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~H---------~~~~~i~~~~D~v~ll~ 186 (592)
+.+++++||--- +|.. .++.+++++++|..||++-+ .++.++.+++|.|.-|.
T Consensus 101 ~~dvViIDEaQF-~~~~----~V~~l~~l~~~~~~Vi~~Gl~~DF~~~~F~~~~~Ll~~AD~Vtel~ 162 (214)
T 2j9r_A 101 EMDVIAIDEVQF-FDGD----IVEVVQVLANRGYRVIVAGLDQDFRGLPFGQVPQLMAIAEHVTKLQ 162 (214)
T ss_dssp SCCEEEECCGGG-SCTT----HHHHHHHHHHTTCEEEEEECSBCTTSCBCTTHHHHHHHCSEEEECC
T ss_pred CCCEEEEECccc-CCHH----HHHHHHHHhhCCCEEEEEecccccccCccccHHHHHHhcccEEeee
Confidence 579999999865 6543 34778888888999999999 78888999999998875
No 410
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=93.52 E-value=0.026 Score=58.50 Aligned_cols=23 Identities=30% Similarity=0.664 Sum_probs=20.4
Q ss_pred CEEECCCCCcHHHHHHHHhCCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRIE 23 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~ 23 (592)
++|+|++||||||+.++|++.+.
T Consensus 27 i~l~G~~G~GKTTl~~~la~~l~ 49 (359)
T 2ga8_A 27 VILVGSPGSGKSTIAEELCQIIN 49 (359)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHHhC
Confidence 46899999999999999998754
No 411
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=93.51 E-value=0.03 Score=53.87 Aligned_cols=21 Identities=29% Similarity=0.542 Sum_probs=18.7
Q ss_pred CEEECCCCCcHHHHHHHHhCC
Q 048028 1 MAILGASGAGKTTLMDALAGR 21 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~ 21 (592)
++|.|++||||||+.+.|+..
T Consensus 3 I~l~G~~GsGKsT~a~~La~~ 23 (223)
T 2xb4_A 3 ILIFGPNGSGKGTQGNLVKDK 23 (223)
T ss_dssp EEEECCTTSCHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999864
No 412
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=93.51 E-value=0.019 Score=52.66 Aligned_cols=21 Identities=29% Similarity=0.567 Sum_probs=8.1
Q ss_pred CEEECCCCCcHHHHHHHHhCC
Q 048028 1 MAILGASGAGKTTLMDALAGR 21 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~ 21 (592)
++|+|++|+|||||++.+.+.
T Consensus 11 i~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 11 LLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEECCCCC------------
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 479999999999999999865
No 413
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=93.49 E-value=0.027 Score=53.17 Aligned_cols=22 Identities=27% Similarity=0.332 Sum_probs=19.5
Q ss_pred CEEECCCCCcHHHHHHHHhCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRI 22 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~ 22 (592)
++|+|++|+|||||++.+.+..
T Consensus 10 i~vvG~~~~GKTsli~~l~~~~ 31 (214)
T 2fh5_B 10 VLFVGLCDSGKTLLFVRLLTGQ 31 (214)
T ss_dssp EEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 4799999999999999998753
No 414
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=93.48 E-value=0.031 Score=53.45 Aligned_cols=22 Identities=41% Similarity=0.650 Sum_probs=19.2
Q ss_pred CEEECCCCCcHHHHHHHHhCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRI 22 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~ 22 (592)
+.|+|++||||||+.+.|+..+
T Consensus 7 I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 7 MVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 4689999999999999998653
No 415
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=93.48 E-value=0.025 Score=53.58 Aligned_cols=22 Identities=32% Similarity=0.570 Sum_probs=19.8
Q ss_pred CEEECCCCCcHHHHHHHHhCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRI 22 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~ 22 (592)
++|+|++|+|||||++.+.+..
T Consensus 31 i~vvG~~~vGKSsLi~~l~~~~ 52 (205)
T 1gwn_A 31 IVVVGDSQCGKTALLHVFAKDC 52 (205)
T ss_dssp EEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHhcCC
Confidence 4799999999999999999764
No 416
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=93.48 E-value=0.03 Score=54.95 Aligned_cols=22 Identities=14% Similarity=0.451 Sum_probs=19.6
Q ss_pred CEEECCCCCcHHHHHHHHhCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRI 22 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~ 22 (592)
++|.|++||||||+-+.|+..+
T Consensus 25 I~I~G~~GSGKST~a~~L~~~l 46 (252)
T 1uj2_A 25 IGVSGGTASGKSSVCAKIVQLL 46 (252)
T ss_dssp EEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 4899999999999999998753
No 417
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=93.45 E-value=0.028 Score=53.52 Aligned_cols=21 Identities=33% Similarity=0.453 Sum_probs=18.8
Q ss_pred CEEECCCCCcHHHHHHHHhCC
Q 048028 1 MAILGASGAGKTTLMDALAGR 21 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~ 21 (592)
++|.|++||||||+.+.|+..
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~ 23 (214)
T 1e4v_A 3 IILLGAPVAGKGTQAQFIMEK 23 (214)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 478999999999999999864
No 418
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=93.44 E-value=0.033 Score=50.69 Aligned_cols=22 Identities=27% Similarity=0.582 Sum_probs=19.3
Q ss_pred CEEECCCCCcHHHHHHHHhCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRI 22 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~ 22 (592)
++|.|++||||||+-+.|+..+
T Consensus 10 i~l~G~~GsGKSTva~~La~~l 31 (168)
T 1zuh_A 10 LVLIGFMGSGKSSLAQELGLAL 31 (168)
T ss_dssp EEEESCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 4799999999999999998653
No 419
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=93.44 E-value=0.032 Score=52.76 Aligned_cols=21 Identities=29% Similarity=0.631 Sum_probs=19.0
Q ss_pred CEEECCCCCcHHHHHHHHhCC
Q 048028 1 MAILGASGAGKTTLMDALAGR 21 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~ 21 (592)
++|.|++||||||+.+.|+..
T Consensus 15 IgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 15 IGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 479999999999999999864
No 420
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=93.42 E-value=0.029 Score=55.38 Aligned_cols=22 Identities=32% Similarity=0.690 Sum_probs=20.1
Q ss_pred CEEECCCCCcHHHHHHHHhCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRI 22 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~ 22 (592)
++|+|++|+|||||++.|.|..
T Consensus 39 I~lvG~~g~GKSSLin~l~~~~ 60 (262)
T 3def_A 39 VLVLGKGGVGKSSTVNSLIGEQ 60 (262)
T ss_dssp EEEEECTTSSHHHHHHHHHTSC
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 4799999999999999999864
No 421
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=93.36 E-value=0.034 Score=53.18 Aligned_cols=21 Identities=38% Similarity=0.767 Sum_probs=19.3
Q ss_pred CEEECCCCCcHHHHHHHHhCC
Q 048028 1 MAILGASGAGKTTLMDALAGR 21 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~ 21 (592)
++|+|++|+|||||++.+.|.
T Consensus 40 VvlvG~~~vGKSSLl~r~~~~ 60 (211)
T 2g3y_A 40 VVLIGEQGVGKSTLANIFAGV 60 (211)
T ss_dssp EEEECCTTSSHHHHHHHHHCC
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 479999999999999999975
No 422
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=93.35 E-value=0.033 Score=54.47 Aligned_cols=21 Identities=38% Similarity=0.434 Sum_probs=18.7
Q ss_pred CEEECCCCCcHHHHHHHHhCC
Q 048028 1 MAILGASGAGKTTLMDALAGR 21 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~ 21 (592)
++|.||+||||||+.+.|+..
T Consensus 32 I~l~G~~GsGKsT~a~~L~~~ 52 (243)
T 3tlx_A 32 YIFLGAPGSGKGTQSLNLKKS 52 (243)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 478999999999999999854
No 423
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=93.34 E-value=0.034 Score=50.71 Aligned_cols=22 Identities=41% Similarity=0.782 Sum_probs=19.3
Q ss_pred CEEECCCCCcHHHHHHHHhCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRI 22 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~ 22 (592)
+.|.||+|+|||||++.++...
T Consensus 46 ~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 46 PVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEECCCCCCHHHHHHHHHHHH
Confidence 3689999999999999998764
No 424
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=93.33 E-value=0.027 Score=52.78 Aligned_cols=22 Identities=27% Similarity=0.472 Sum_probs=19.7
Q ss_pred CEEECCCCCcHHHHHHHHhCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRI 22 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~ 22 (592)
++|+|++|+|||||++.+.+..
T Consensus 28 i~vvG~~~~GKSsli~~l~~~~ 49 (201)
T 2gco_A 28 LVIVGDGACGKTCLLIVFSKDQ 49 (201)
T ss_dssp EEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEECCCCCCHHHHHHHHHhCc
Confidence 4799999999999999999753
No 425
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=93.24 E-value=0.032 Score=55.31 Aligned_cols=22 Identities=23% Similarity=0.659 Sum_probs=19.9
Q ss_pred CEEECCCCCcHHHHHHHHhCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRI 22 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~ 22 (592)
++++|++|+|||||+|.|.|..
T Consensus 42 I~vvG~~g~GKSSLin~l~~~~ 63 (270)
T 1h65_A 42 ILVMGKGGVGKSSTVNSIIGER 63 (270)
T ss_dssp EEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 4799999999999999999864
No 426
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=93.10 E-value=0.034 Score=55.72 Aligned_cols=20 Identities=30% Similarity=0.645 Sum_probs=18.3
Q ss_pred CEEECCCCCcHHHHHHHHhC
Q 048028 1 MAILGASGAGKTTLMDALAG 20 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g 20 (592)
++|.|++||||||+.+.|+.
T Consensus 78 I~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 78 LGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp EEEEECTTSCHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 47999999999999999983
No 427
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=93.09 E-value=0.032 Score=51.71 Aligned_cols=22 Identities=27% Similarity=0.453 Sum_probs=19.5
Q ss_pred CEEECCCCCcHHHHHHHHhCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRI 22 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~ 22 (592)
++|+|++|+|||||++.+.+..
T Consensus 21 i~v~G~~~~GKssli~~l~~~~ 42 (194)
T 2atx_A 21 CVVVGDGAVGKTCLLMSYANDA 42 (194)
T ss_dssp EEEEECTTSSHHHHHHHHHHSS
T ss_pred EEEECCCCCCHHHHHHHHhcCC
Confidence 4799999999999999998753
No 428
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=93.07 E-value=0.018 Score=54.63 Aligned_cols=22 Identities=27% Similarity=0.579 Sum_probs=19.4
Q ss_pred CEEECCCCCcHHHHHHHHhCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRI 22 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~ 22 (592)
++|+|++|+|||||++.+.+..
T Consensus 14 i~vvG~~~~GKSsli~~l~~~~ 35 (218)
T 4djt_A 14 ICLIGDGGVGKTTYINRVLDGR 35 (218)
T ss_dssp EEEECCTTSSHHHHHCBCTTCS
T ss_pred EEEECCCCCCHHHHHHHHhcCC
Confidence 4799999999999999998653
No 429
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=92.95 E-value=0.026 Score=52.14 Aligned_cols=21 Identities=33% Similarity=0.468 Sum_probs=18.6
Q ss_pred CEEECCCCCcHHHHHHHHhCC
Q 048028 1 MAILGASGAGKTTLMDALAGR 21 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~ 21 (592)
++|+|++|+|||||++.+.+.
T Consensus 25 i~v~G~~~~GKssli~~l~~~ 45 (189)
T 2x77_A 25 VLMLGLDNAGKTSILYRLHLG 45 (189)
T ss_dssp EEEEEETTSSHHHHHHHTCCS
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 479999999999999999654
No 430
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=92.94 E-value=0.041 Score=54.33 Aligned_cols=21 Identities=33% Similarity=0.528 Sum_probs=18.9
Q ss_pred CEEECCCCCcHHHHHHHHhCC
Q 048028 1 MAILGASGAGKTTLMDALAGR 21 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~ 21 (592)
+.|.|++||||||+.+.|+..
T Consensus 7 Ivl~G~pGSGKSTla~~La~~ 27 (260)
T 3a4m_A 7 IILTGLPGVGKSTFSKNLAKI 27 (260)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHHH
Confidence 368999999999999999875
No 431
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=92.92 E-value=0.15 Score=53.14 Aligned_cols=72 Identities=8% Similarity=0.049 Sum_probs=41.8
Q ss_pred HHHHHHHHHh--hCCcEEEEeCCCCCC-----CH--------HHHHHHHHHHHHH---HHc-CCEEEEEecCChh-----
Q 048028 118 RRVSIGIHII--HDPILLFLDEPTSGL-----DS--------TSAFMVVNVLQRI---AKS-GSIVIMSIHQPSY----- 173 (592)
Q Consensus 118 qRv~ia~~L~--~~p~lllLDEPtsgL-----D~--------~~~~~i~~~l~~l---a~~-g~tvi~~~H~~~~----- 173 (592)
+-+.+++.++ .+++++++|..++=. |. ..+..+.+.+++| +++ +.+||++.|-...
T Consensus 139 ~~l~~l~~l~~~~~~~lVVIDsl~~l~~~~e~~g~~gd~~~~~~~r~~~~~lr~L~~~a~~~~~~VI~~nq~~~~~~~~f 218 (366)
T 1xp8_A 139 QALEIMELLVRSGAIDVVVVDSVAALTPRAEIEGDMGDSLPGLQARLMSQALRKLTAILSKTGTAAIFINQVREKIGVMY 218 (366)
T ss_dssp HHHHHHHHHHTTTCCSEEEEECTTTCCCSTTC--------CCHHHHHHHHHHHHHHHHHTTTCCEEEEEEEC--------
T ss_pred HHHHHHHHHHhcCCCCEEEEeChHHhccccccccccccchhhHHHHHHHHHHHHHHHHHHHcCCEEEEEEecccccCccc
Confidence 3445666665 469999999998644 11 1223455566665 443 7777777664321
Q ss_pred ----------HHHhhhceEEEecCCe
Q 048028 174 ----------RILSLLDRLIILSHGQ 189 (592)
Q Consensus 174 ----------~i~~~~D~v~ll~~G~ 189 (592)
.+...+|-++.|.+++
T Consensus 219 g~p~~~~gg~al~~~a~~rl~L~r~~ 244 (366)
T 1xp8_A 219 GNPETTTGGRALKFYASVRLDVRKIG 244 (366)
T ss_dssp -------CHHHHHHHCSEEEEEEEES
T ss_pred CCccccCCcchhhheeeEEEEEEecc
Confidence 1244577777777654
No 432
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=92.92 E-value=0.04 Score=54.70 Aligned_cols=23 Identities=30% Similarity=0.663 Sum_probs=20.6
Q ss_pred CEEECCCCCcHHHHHHHHhCCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRIE 23 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~ 23 (592)
++++|.+|+|||||+|.|.|...
T Consensus 102 v~~vG~~~vGKSslin~l~~~~~ 124 (262)
T 3cnl_A 102 VLIVGVPNTGKSTIINKLKGKRA 124 (262)
T ss_dssp EEEEESTTSSHHHHHHHHHTTCC
T ss_pred eEEeCCCCCCHHHHHHHHhcccc
Confidence 47999999999999999998754
No 433
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=92.90 E-value=0.038 Score=52.72 Aligned_cols=22 Identities=27% Similarity=0.622 Sum_probs=19.7
Q ss_pred CEEECCCCCcHHHHHHHHhCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRI 22 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~ 22 (592)
++|+|++|+|||||++.+.+..
T Consensus 16 i~v~G~~~vGKSsli~~l~~~~ 37 (223)
T 3cpj_B 16 IVLIGDSGVGKSNLLSRFTKNE 37 (223)
T ss_dssp EEEESCTTSSHHHHHHHHHHCC
T ss_pred EEEECcCCCCHHHHHHHHhcCC
Confidence 4799999999999999999764
No 434
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=92.83 E-value=0.036 Score=52.01 Aligned_cols=22 Identities=18% Similarity=0.450 Sum_probs=19.4
Q ss_pred CEEECCCCCcHHHHHHHHhCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRI 22 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~ 22 (592)
++|+|++|+|||||++.+.+..
T Consensus 32 i~vvG~~~vGKSsli~~l~~~~ 53 (201)
T 2hup_A 32 LVLVGDASVGKTCVVQRFKTGA 53 (201)
T ss_dssp EEEEECTTSSHHHHHHHHHHSC
T ss_pred EEEECcCCCCHHHHHHHHhhCC
Confidence 4799999999999999998653
No 435
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=92.78 E-value=0.019 Score=53.60 Aligned_cols=21 Identities=24% Similarity=0.627 Sum_probs=3.1
Q ss_pred CEEECCCCCcHHHHHHHHhCC
Q 048028 1 MAILGASGAGKTTLMDALAGR 21 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~ 21 (592)
++|+|++|+|||||++.+.+.
T Consensus 23 i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 23 VAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEC-----------------
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 479999999999999999876
No 436
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=92.76 E-value=0.044 Score=54.94 Aligned_cols=21 Identities=24% Similarity=0.559 Sum_probs=18.7
Q ss_pred CEEECCCCCcHHHHHHHHhCC
Q 048028 1 MAILGASGAGKTTLMDALAGR 21 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~ 21 (592)
+.|+|++||||||+.+.|+..
T Consensus 5 I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 5 ILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 368999999999999999863
No 437
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=92.70 E-value=0.21 Score=62.33 Aligned_cols=72 Identities=10% Similarity=0.052 Sum_probs=46.6
Q ss_pred HHHHHHHHh--hCCcEEEEeCCCCCCC-H------------HHHHHHHHHHHHH---HH-cCCEEEEEecCChh------
Q 048028 119 RVSIGIHII--HDPILLFLDEPTSGLD-S------------TSAFMVVNVLQRI---AK-SGSIVIMSIHQPSY------ 173 (592)
Q Consensus 119 Rv~ia~~L~--~~p~lllLDEPtsgLD-~------------~~~~~i~~~l~~l---a~-~g~tvi~~~H~~~~------ 173 (592)
-+.+++.++ .+|+++++|.-++=.. + ..+..+.+.|++| ++ .+.+||++.|-...
T Consensus 449 il~~~~~lv~~~~~~lIVIDSL~al~~~~e~eg~~Gd~~~~~q~R~is~~Lr~L~~lake~~i~VIlinQl~~~vg~~~g 528 (2050)
T 3cmu_A 449 ALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFG 528 (2050)
T ss_dssp HHHHHHHHHHHTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTTCEEEEEECCEECTTCCSS
T ss_pred HHHHHHHHHHhcCCcEEEECCHHHhhcccccccccccchhhHHHHHHHHHHHHHHHHHHHcCCeEEEEeecccccccccC
Confidence 345566554 4799999999876542 1 1234456666666 44 48888888774221
Q ss_pred ---------HHHhhhceEEEecCCeE
Q 048028 174 ---------RILSLLDRLIILSHGQS 190 (592)
Q Consensus 174 ---------~i~~~~D~v~ll~~G~~ 190 (592)
.+...+|-++.|++.+.
T Consensus 529 ~p~~psGg~ale~~ADv~l~L~R~~~ 554 (2050)
T 3cmu_A 529 NPETTTGGNALKFYASVRLDIRRIGA 554 (2050)
T ss_dssp CCEECSSHHHHHHHEEEEEEEEEEEE
T ss_pred CCcCCCCcchhhhhCCEEEEEEeccc
Confidence 35677899988876543
No 438
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=92.64 E-value=0.024 Score=57.15 Aligned_cols=21 Identities=29% Similarity=0.551 Sum_probs=16.0
Q ss_pred CEEECCCCCcHHHHHHHHhCC
Q 048028 1 MAILGASGAGKTTLMDALAGR 21 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~ 21 (592)
++|-||+||||||+.+.|+..
T Consensus 8 IgItG~sGSGKSTva~~L~~~ 28 (290)
T 1a7j_A 8 ISVTGSSGAGTSTVKHTFDQI 28 (290)
T ss_dssp EEEESCC---CCTHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 489999999999999999864
No 439
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=92.60 E-value=0.045 Score=52.28 Aligned_cols=22 Identities=27% Similarity=0.528 Sum_probs=19.2
Q ss_pred CEEECCCCCcHHHHHHHHhCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRI 22 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~ 22 (592)
+.|+|++||||||+.+.|+..+
T Consensus 8 I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 8 LILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp EEEEECTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 3689999999999999998653
No 440
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=92.57 E-value=0.039 Score=50.27 Aligned_cols=22 Identities=41% Similarity=0.706 Sum_probs=19.2
Q ss_pred EEECCCCCcHHHHHHHHhCCCC
Q 048028 2 AILGASGAGKTTLMDALAGRIE 23 (592)
Q Consensus 2 aI~GpsGaGKSTLL~~l~g~~~ 23 (592)
.|.||+|+|||||++.++....
T Consensus 47 ll~G~~G~GKT~la~~~~~~~~ 68 (187)
T 2p65_A 47 ILLGDPGVGKTAIVEGLAIKIV 68 (187)
T ss_dssp EEESCGGGCHHHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHHH
Confidence 5889999999999999987643
No 441
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=92.52 E-value=0.044 Score=55.00 Aligned_cols=23 Identities=39% Similarity=0.619 Sum_probs=20.4
Q ss_pred CEEECCCCCcHHHHHHHHhCCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRIE 23 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~ 23 (592)
+.|.||+|+|||||.++|++...
T Consensus 50 ~ll~G~~GtGKt~la~~la~~~~ 72 (311)
T 4fcw_A 50 FLFLGPTGVGKTELAKTLAATLF 72 (311)
T ss_dssp EEEESCSSSSHHHHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHHHHc
Confidence 36899999999999999998764
No 442
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=92.51 E-value=0.042 Score=51.72 Aligned_cols=21 Identities=24% Similarity=0.431 Sum_probs=18.7
Q ss_pred CEEECCCCCcHHHHHHHHhCC
Q 048028 1 MAILGASGAGKTTLMDALAGR 21 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~ 21 (592)
++|+|++|+|||||++.+.+.
T Consensus 33 i~vvG~~~~GKSsLi~~l~~~ 53 (204)
T 4gzl_A 33 CVVVGDGAVGKTCLLISYTTN 53 (204)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECcCCCCHHHHHHHHHhC
Confidence 479999999999999999854
No 443
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=92.48 E-value=0.052 Score=51.59 Aligned_cols=21 Identities=38% Similarity=0.498 Sum_probs=19.1
Q ss_pred CEEECCCCCcHHHHHHHHhCC
Q 048028 1 MAILGASGAGKTTLMDALAGR 21 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~ 21 (592)
++|+||+|+|||||...|+.+
T Consensus 37 ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 37 VLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp EEEECCCTTTTHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 469999999999999999876
No 444
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=92.47 E-value=0.042 Score=52.36 Aligned_cols=21 Identities=38% Similarity=0.689 Sum_probs=18.7
Q ss_pred CEEECCCCCcHHHHHHHHhCC
Q 048028 1 MAILGASGAGKTTLMDALAGR 21 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~ 21 (592)
++|+|++|+|||||++.+++.
T Consensus 41 i~ivG~~gvGKTtl~~~l~~~ 61 (226)
T 2hf9_A 41 FDFMGAIGSGKTLLIEKLIDN 61 (226)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHHH
Confidence 478999999999999998865
No 445
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=92.45 E-value=0.077 Score=54.57 Aligned_cols=23 Identities=35% Similarity=0.635 Sum_probs=20.4
Q ss_pred CEEECCCCCcHHHHHHHHhCCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRIE 23 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~ 23 (592)
+.|+||+|||||||-..|+..+.
T Consensus 43 IvI~GPTgsGKTtLa~~LA~~l~ 65 (339)
T 3a8t_A 43 LVLMGATGTGKSRLSIDLAAHFP 65 (339)
T ss_dssp EEEECSTTSSHHHHHHHHHTTSC
T ss_pred EEEECCCCCCHHHHHHHHHHHCC
Confidence 36999999999999999998753
No 446
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=92.44 E-value=0.095 Score=60.86 Aligned_cols=116 Identities=16% Similarity=0.156 Sum_probs=0.0
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCceeEEEECCEecCc-ccccceeEEEccCCCCCCCCCHHHHHHHHHHccCCCCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQGAVTLNGEVLES-KLLKIISAYVMQDDLLFPMLTVEETLMFAAEFRLPRSVT 79 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~G~I~i~g~~~~~-~~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~ 79 (592)
+.|.||+|+|||+|.+.|+....... .--|.+|...... ....+.+|.-+.
T Consensus 591 vLl~Gp~GtGKT~lA~~la~~~~~~~-~~~i~i~~~~~~~~~~~s~l~g~~~~--------------------------- 642 (854)
T 1qvr_A 591 FLFLGPTGVGKTELAKTLAATLFDTE-EAMIRIDMTEYMEKHAVSRLIGAPPG--------------------------- 642 (854)
T ss_dssp EEEBSCSSSSHHHHHHHHHHHHHSSG-GGEEEECTTTCCSSGGGGGC---------------------------------
T ss_pred EEEECCCCCCHHHHHHHHHHHhcCCC-CcEEEEechhccchhHHHHHcCCCCC---------------------------
Q ss_pred HHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH-
Q 048028 80 KTKKQERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFLDEPTSGLDSTSAFMVVNVLQRIA- 158 (592)
Q Consensus 80 ~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllLDEPtsgLD~~~~~~i~~~l~~la- 158 (592)
..|.++.+......--..+.+|+|||. .-+++.....+.+.|.+-.
T Consensus 643 --------------------------------~~G~~~~g~l~~~~~~~~~~vl~lDEi-~~l~~~~~~~Ll~~l~~~~~ 689 (854)
T 1qvr_A 643 --------------------------------YVGYEEGGQLTEAVRRRPYSVILFDEI-EKAHPDVFNILLQILDDGRL 689 (854)
T ss_dssp ----------------------------------------CHHHHHHHCSSEEEEESSG-GGSCHHHHHHHHHHHTTTEE
T ss_pred --------------------------------CcCccccchHHHHHHhCCCeEEEEecc-cccCHHHHHHHHHHhccCce
Q ss_pred ---------HcCCEEEEEecCChhHHHh
Q 048028 159 ---------KSGSIVIMSIHQPSYRILS 177 (592)
Q Consensus 159 ---------~~g~tvi~~~H~~~~~i~~ 177 (592)
-++..+|++++.+...+..
T Consensus 690 ~~~~g~~vd~~~~iiI~tsn~~~~~~~~ 717 (854)
T 1qvr_A 690 TDSHGRTVDFRNTVIILTSNLGSPLILE 717 (854)
T ss_dssp CCSSSCCEECTTEEEEEECCTTHHHHHH
T ss_pred ECCCCCEeccCCeEEEEecCcChHHHhh
No 447
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=92.43 E-value=0.047 Score=51.88 Aligned_cols=21 Identities=29% Similarity=0.585 Sum_probs=19.0
Q ss_pred CEEECCCCCcHHHHHHHHhCC
Q 048028 1 MAILGASGAGKTTLMDALAGR 21 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~ 21 (592)
++|+|++|+|||||++.+.+.
T Consensus 30 i~vvG~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 30 LVLVGDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECcCCCCHHHHHHHHhcC
Confidence 479999999999999999865
No 448
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=92.43 E-value=0.16 Score=54.93 Aligned_cols=71 Identities=21% Similarity=0.293 Sum_probs=52.7
Q ss_pred CCCCCHHHHHHHHHHHH--Hhh---------------CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCC
Q 048028 109 HRGVSGGERRRVSIGIH--IIH---------------DPILLFLDEPTSGLDSTSAFMVVNVLQRIAKSGSIVIMSIHQP 171 (592)
Q Consensus 109 ~~~LSgGerqRv~ia~~--L~~---------------~p~lllLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~H~~ 171 (592)
.++.||||+|-.-+|++ ++. .=.++++||. +-+|...+...+++++++ |--+|+++=.
T Consensus 377 ~g~~SGGE~qp~Yv~i~As~~~~y~~~~~~~~~~~~~~~rlvvlDEA-~kmD~~~~~~~~~l~~~l---glQliiatP~- 451 (483)
T 3euj_A 377 SSALSTGEAIGTGMSILLMVVQSWEEESRRMRAKDILPCRLLFLDQA-ARLDAMSINTLFELCERL---DMQLLIAAPE- 451 (483)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHHHHHTSSSSCSSCCCCCEEEESSG-GGSCHHHHHHHHHHHHHT---TCEEEEEESS-
T ss_pred cCCCCCccccHHHHHHHHHHHHHhcccccccccCCCCceeEEEEecc-ccCCHHHHHHHHHHHHHc---CCEEEEECcc-
Confidence 56899999997544443 322 1247999999 999999999999999976 6666666643
Q ss_pred hhHHHhhhceEEEec
Q 048028 172 SYRILSLLDRLIILS 186 (592)
Q Consensus 172 ~~~i~~~~D~v~ll~ 186 (592)
.+....|.++.+-
T Consensus 452 --~i~p~v~~~~~~~ 464 (483)
T 3euj_A 452 --NISPERGTTYKLV 464 (483)
T ss_dssp --SCCCSSSEEEECC
T ss_pred --hhhhccCceEEEE
Confidence 2556778887775
No 449
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=92.42 E-value=0.044 Score=51.63 Aligned_cols=22 Identities=18% Similarity=0.320 Sum_probs=19.3
Q ss_pred CEEECCCCCcHHHHHHHHhCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRI 22 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~ 22 (592)
++|+|++|+|||||++.+.+..
T Consensus 12 i~i~G~~~~GKTsli~~l~~~~ 33 (212)
T 2j0v_A 12 CVTVGDGAVGKTCMLICYTSNK 33 (212)
T ss_dssp EEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHhcCC
Confidence 4799999999999999998653
No 450
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=92.36 E-value=0.055 Score=51.24 Aligned_cols=42 Identities=14% Similarity=0.184 Sum_probs=29.3
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCh
Q 048028 129 DPILLFLDEPTSGLDSTSAFMVVNVLQRIAKSGSIVIMSIHQPS 172 (592)
Q Consensus 129 ~p~lllLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~H~~~ 172 (592)
+|.++++||.-. +|......+.+.+.+. ..+..+|++++++.
T Consensus 126 ~~~vlviDe~~~-l~~~~~~~l~~~l~~~-~~~~~~i~~t~~~~ 167 (250)
T 1njg_A 126 RFKVYLIDEVHM-LSRHSFNALLKTLEEP-PEHVKFLLATTDPQ 167 (250)
T ss_dssp SSEEEEEETGGG-SCHHHHHHHHHHHHSC-CTTEEEEEEESCGG
T ss_pred CceEEEEECccc-ccHHHHHHHHHHHhcC-CCceEEEEEeCChH
Confidence 578999999765 7777766666665432 12456888888765
No 451
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=92.33 E-value=0.076 Score=55.56 Aligned_cols=38 Identities=24% Similarity=0.525 Sum_probs=29.4
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCC---------CCceeEEEECCEec
Q 048028 1 MAILGASGAGKTTLMDALAGRIEK---------ESLQGAVTLNGEVL 38 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~---------~~~~G~I~i~g~~~ 38 (592)
+||+|.+.+|||||+|.|+|.... .+..|.+.++|.++
T Consensus 75 V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~~~~i 121 (376)
T 4a9a_A 75 VGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKGAKI 121 (376)
T ss_dssp EEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEETTEEE
T ss_pred EEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEeCCcEE
Confidence 589999999999999999996431 12457888877654
No 452
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=92.32 E-value=0.054 Score=55.84 Aligned_cols=22 Identities=32% Similarity=0.549 Sum_probs=19.8
Q ss_pred CEEECCCCCcHHHHHHHHhCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRI 22 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~ 22 (592)
++|.||+|||||||-+.|+..+
T Consensus 10 I~I~GptgSGKTtla~~La~~l 31 (340)
T 3d3q_A 10 IVIVGPTASGKTELSIEVAKKF 31 (340)
T ss_dssp EEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEECCCcCcHHHHHHHHHHHc
Confidence 4799999999999999999765
No 453
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=92.23 E-value=0.076 Score=54.08 Aligned_cols=22 Identities=41% Similarity=0.572 Sum_probs=19.7
Q ss_pred CEEECCCCCcHHHHHHHHhCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRI 22 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~ 22 (592)
++|+||+|||||||...|+...
T Consensus 6 i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 6 VAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp EEEECCTTSCHHHHHHHHHHTT
T ss_pred EEEECCCcCCHHHHHHHHHHhC
Confidence 3689999999999999999764
No 454
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=92.22 E-value=0.059 Score=52.08 Aligned_cols=22 Identities=41% Similarity=0.560 Sum_probs=19.2
Q ss_pred CEEECCCCCcHHHHHHHHhCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRI 22 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~ 22 (592)
+.|+|++||||||+.+.|+..+
T Consensus 19 I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 19 AVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 3689999999999999998653
No 455
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=92.16 E-value=0.042 Score=54.04 Aligned_cols=22 Identities=41% Similarity=0.714 Sum_probs=19.1
Q ss_pred CEEECCCCCcHHHHHHHHhCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRI 22 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~ 22 (592)
+.|.||+|+|||||.++|++..
T Consensus 47 vll~G~~GtGKT~la~~la~~~ 68 (268)
T 2r62_A 47 VLLVGPPGTGKTLLAKAVAGEA 68 (268)
T ss_dssp CCCBCSSCSSHHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHHh
Confidence 3578999999999999999753
No 456
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=92.14 E-value=0.061 Score=51.38 Aligned_cols=21 Identities=43% Similarity=0.615 Sum_probs=18.6
Q ss_pred CEEECCCCCcHHHHHHHHhCC
Q 048028 1 MAILGASGAGKTTLMDALAGR 21 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~ 21 (592)
+.|+||+||||+|.-+.|+..
T Consensus 3 Iil~GpPGsGKgTqa~~La~~ 23 (206)
T 3sr0_A 3 LVFLGPPGAGKGTQAKRLAKE 23 (206)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 368999999999999999865
No 457
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=92.01 E-value=0.062 Score=54.96 Aligned_cols=22 Identities=41% Similarity=0.619 Sum_probs=19.8
Q ss_pred CEEECCCCCcHHHHHHHHhCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRI 22 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~ 22 (592)
+.|+||+|||||||-+.|+...
T Consensus 8 i~i~GptGsGKTtla~~La~~l 29 (323)
T 3crm_A 8 IFLMGPTAAGKTDLAMALADAL 29 (323)
T ss_dssp EEEECCTTSCHHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 4699999999999999999865
No 458
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=91.81 E-value=0.12 Score=55.05 Aligned_cols=22 Identities=32% Similarity=0.575 Sum_probs=19.0
Q ss_pred CEEECCCCCcHHHHHHHHhCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRI 22 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~ 22 (592)
++|+|.+++|||||+|.|.|..
T Consensus 4 v~ivG~pnvGKStL~nrl~~~~ 25 (439)
T 1mky_A 4 VLIVGRPNVGKSTLFNKLVKKK 25 (439)
T ss_dssp EEEECCTTSSHHHHHHHHHC--
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 5899999999999999999864
No 459
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=91.08 E-value=0.031 Score=52.40 Aligned_cols=21 Identities=24% Similarity=0.431 Sum_probs=18.4
Q ss_pred CEEECCCCCcHHHHHHHHhCC
Q 048028 1 MAILGASGAGKTTLMDALAGR 21 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~ 21 (592)
++|+|++|+|||||++.+.+.
T Consensus 33 i~v~G~~~~GKSsli~~l~~~ 53 (204)
T 3th5_A 33 CVVVGDGAVGKTCLLISYTTN 53 (204)
Confidence 579999999999999988753
No 460
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=91.80 E-value=0.066 Score=53.72 Aligned_cols=22 Identities=36% Similarity=0.587 Sum_probs=20.1
Q ss_pred CEEECCCCCcHHHHHHHHhCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRI 22 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~ 22 (592)
++++|.+|+|||||+|.|.|..
T Consensus 123 v~~vG~~nvGKSsliN~l~~~~ 144 (282)
T 1puj_A 123 ALIIGIPNVGKSTLINRLAKKN 144 (282)
T ss_dssp EEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEecCCCchHHHHHHHhcCc
Confidence 4799999999999999999874
No 461
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=91.71 E-value=0.065 Score=56.51 Aligned_cols=42 Identities=14% Similarity=0.176 Sum_probs=29.9
Q ss_pred HHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCcEEEE
Q 048028 85 ERVEALINQLGLRSAAKTFIGDERHRGVSGGERRRVSIGIHIIHDPILLFL 135 (592)
Q Consensus 85 ~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~~L~~~p~lllL 135 (592)
+.++++++.++.... ...+|.+|.+++.-..-+...|-++++
T Consensus 180 ~~~~~~l~~l~~~~~---------~~~~~~~e~~~l~~~~~~~~kP~i~v~ 221 (397)
T 1wxq_A 180 NDVWEAMHKLNLPED---------PTKWSQDDLLAFASEIRRVNKPMVIAA 221 (397)
T ss_dssp HHHHHHHHHTTCCSC---------GGGCCHHHHHHHHHHHHHHHSCEEEEE
T ss_pred HHHHHHHHHhccCCc---------cccCCHHHHHHHHHhhhccCCCEEEEE
Confidence 346677777776543 124899998888777667778988887
No 462
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=91.69 E-value=0.22 Score=56.87 Aligned_cols=21 Identities=52% Similarity=0.735 Sum_probs=19.0
Q ss_pred EEECCCCCcHHHHHHHHhCCC
Q 048028 2 AILGASGAGKTTLMDALAGRI 22 (592)
Q Consensus 2 aI~GpsGaGKSTLL~~l~g~~ 22 (592)
.+.||+|+|||+|.++|+...
T Consensus 525 Ll~Gp~GtGKT~lA~ala~~l 545 (758)
T 3pxi_A 525 IFLGPTGVGKTELARALAESI 545 (758)
T ss_dssp EEESCTTSSHHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHh
Confidence 589999999999999999764
No 463
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=91.67 E-value=0.075 Score=50.50 Aligned_cols=22 Identities=32% Similarity=0.579 Sum_probs=19.6
Q ss_pred CEEECCCCCcHHHHHHHHhCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRI 22 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~ 22 (592)
++|.|++||||||+.+.|+..+
T Consensus 6 i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 6 IALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp EEEECCTTSSHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHhc
Confidence 4799999999999999998753
No 464
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=91.67 E-value=0.074 Score=51.25 Aligned_cols=20 Identities=35% Similarity=0.614 Sum_probs=18.1
Q ss_pred EEECCCCCcHHHHHHHHhCC
Q 048028 2 AILGASGAGKTTLMDALAGR 21 (592)
Q Consensus 2 aI~GpsGaGKSTLL~~l~g~ 21 (592)
.|+||+||||+|.-+.|+-.
T Consensus 33 ~llGpPGsGKgTqa~~L~~~ 52 (217)
T 3umf_A 33 FVLGGPGSGKGTQCEKLVQK 52 (217)
T ss_dssp EEECCTTCCHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHH
Confidence 58999999999999999865
No 465
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=91.66 E-value=0.048 Score=56.40 Aligned_cols=22 Identities=32% Similarity=0.747 Sum_probs=20.2
Q ss_pred CEEECCCCCcHHHHHHHHhCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRI 22 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~ 22 (592)
++|+|++|+|||||++.|.|..
T Consensus 34 I~vvG~~~~GKSSLln~L~g~~ 55 (353)
T 2x2e_A 34 IAVVGGQSAGKSSVLENFVGRD 55 (353)
T ss_dssp EEEECBTTSSHHHHHHTTTTSC
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 4899999999999999999974
No 466
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=91.63 E-value=0.076 Score=51.65 Aligned_cols=22 Identities=36% Similarity=0.626 Sum_probs=19.3
Q ss_pred CEEECCCCCcHHHHHHHHhCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRI 22 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~ 22 (592)
+||+|++||||||+.+.|+..+
T Consensus 11 ~~~~G~pGsGKsT~a~~L~~~~ 32 (230)
T 3gmt_A 11 LILLGAPGAGKGTQANFIKEKF 32 (230)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred eeeECCCCCCHHHHHHHHHHHh
Confidence 4899999999999999998643
No 467
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=91.56 E-value=0.078 Score=53.72 Aligned_cols=21 Identities=24% Similarity=0.602 Sum_probs=19.1
Q ss_pred CEEECCCCCcHHHHHHHHhCC
Q 048028 1 MAILGASGAGKTTLMDALAGR 21 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~ 21 (592)
++|+|++|+|||||++.+.+.
T Consensus 6 I~lvG~~~vGKSSLi~~l~~~ 26 (307)
T 3r7w_A 6 LLLMGRSGSGKSSMRSIIFSN 26 (307)
T ss_dssp EEEECCTTSSHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 479999999999999998876
No 468
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=91.52 E-value=0.067 Score=56.02 Aligned_cols=22 Identities=36% Similarity=0.466 Sum_probs=19.8
Q ss_pred CEEECCCCCcHHHHHHHHhCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRI 22 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~ 22 (592)
++|+||+|+|||||++.|++..
T Consensus 177 ~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 177 GLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp EEEECCSSSSHHHHHHHHHHHH
T ss_pred EEEecCCCCChhHHHHHHHHHH
Confidence 4799999999999999999864
No 469
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=91.51 E-value=0.39 Score=59.25 Aligned_cols=69 Identities=10% Similarity=0.042 Sum_probs=44.8
Q ss_pred HHHHHHh--hCCcEEEEeCCCCCCCH-------------HHHHHHHHHHHHH---HH-cCCEEEEEecCCh---------
Q 048028 121 SIGIHII--HDPILLFLDEPTSGLDS-------------TSAFMVVNVLQRI---AK-SGSIVIMSIHQPS--------- 172 (592)
Q Consensus 121 ~ia~~L~--~~p~lllLDEPtsgLD~-------------~~~~~i~~~l~~l---a~-~g~tvi~~~H~~~--------- 172 (592)
.+++.++ .+|+++++|..++=... .....+.+.+++| ++ .|.+||++.|...
T Consensus 451 ~~l~~lv~~~~~~lVVIDSL~al~~~~e~e~~~g~~~~~~q~r~~s~~Lr~L~~~ak~~~v~VI~inQl~~~vg~~fg~~ 530 (1706)
T 3cmw_A 451 EICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNP 530 (1706)
T ss_dssp HHHHHHHHHTCCSEEEESCSTTCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHHHTCEEEEEECEEECTTCCSSCC
T ss_pred HHHHHHHHhcCCCEEEECCHHHhhccccccccccccchhHHHHHHHHHHHHHHHHHHHcCCEEEEEeecccccccccCCC
Confidence 4455554 47999999999876541 1233445555555 34 4889999887421
Q ss_pred ------hHHHhhhceEEEecCCe
Q 048028 173 ------YRILSLLDRLIILSHGQ 189 (592)
Q Consensus 173 ------~~i~~~~D~v~ll~~G~ 189 (592)
..+...+|-++.+.+.+
T Consensus 531 ~~p~gg~ale~~ADv~L~L~R~~ 553 (1706)
T 3cmw_A 531 ETTTGGNALKFYASVRLDIRRIG 553 (1706)
T ss_dssp EEESSCSHHHHHEEEEEEEEEEE
T ss_pred ccCCCCcceeeeCCEEEEEEecc
Confidence 24667889888877644
No 470
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=91.35 E-value=0.072 Score=49.47 Aligned_cols=21 Identities=38% Similarity=0.487 Sum_probs=18.2
Q ss_pred CEEECCCCCcHHHHHHHHhCC
Q 048028 1 MAILGASGAGKTTLMDALAGR 21 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~ 21 (592)
+.|.|+||+|||||...|..+
T Consensus 19 vli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 19 VLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp EEEEESSSSSHHHHHHHHHHT
T ss_pred EEEEcCCCCCHHHHHHHHHHc
Confidence 468999999999999888764
No 471
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=91.35 E-value=0.084 Score=49.32 Aligned_cols=42 Identities=19% Similarity=0.256 Sum_probs=28.1
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCh
Q 048028 129 DPILLFLDEPTSGLDSTSAFMVVNVLQRIAKSGSIVIMSIHQPS 172 (592)
Q Consensus 129 ~p~lllLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~H~~~ 172 (592)
++.++++||. ..++......+.+.+.+.. .+..+|++++.+.
T Consensus 102 ~~~vliiDe~-~~l~~~~~~~l~~~l~~~~-~~~~~i~~~~~~~ 143 (226)
T 2chg_A 102 PFKIIFLDEA-DALTADAQAALRRTMEMYS-KSCRFILSCNYVS 143 (226)
T ss_dssp SCEEEEEETG-GGSCHHHHHHHHHHHHHTT-TTEEEEEEESCGG
T ss_pred CceEEEEeCh-hhcCHHHHHHHHHHHHhcC-CCCeEEEEeCChh
Confidence 6889999995 4567766666666666532 2445777777654
No 472
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=91.29 E-value=0.066 Score=57.07 Aligned_cols=21 Identities=38% Similarity=0.773 Sum_probs=19.5
Q ss_pred CEEECCCCCcHHHHHHHHhCC
Q 048028 1 MAILGASGAGKTTLMDALAGR 21 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~ 21 (592)
++|+|++|+|||||+|.|+|.
T Consensus 6 V~ivG~~nvGKStL~n~l~~~ 26 (436)
T 2hjg_A 6 VAIVGRPNVGKSTIFNRIAGE 26 (436)
T ss_dssp EEEECSTTSSHHHHHHHHEEE
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 589999999999999999985
No 473
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=91.25 E-value=0.067 Score=57.58 Aligned_cols=21 Identities=33% Similarity=0.637 Sum_probs=19.5
Q ss_pred CEEECCCCCcHHHHHHHHhCC
Q 048028 1 MAILGASGAGKTTLMDALAGR 21 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~ 21 (592)
++|+|++|+|||||+|.|+|.
T Consensus 227 V~ivG~~nvGKSSLln~L~~~ 247 (462)
T 3geh_A 227 VAIVGRPNVGKSSLLNAWSQS 247 (462)
T ss_dssp EEEEECTTSSHHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHhCC
Confidence 579999999999999999985
No 474
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=91.24 E-value=0.074 Score=54.26 Aligned_cols=43 Identities=7% Similarity=0.092 Sum_probs=31.9
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCChh
Q 048028 129 DPILLFLDEPTSGLDSTSAFMVVNVLQRIAKSGSIVIMSIHQPSY 173 (592)
Q Consensus 129 ~p~lllLDEPtsgLD~~~~~~i~~~l~~la~~g~tvi~~~H~~~~ 173 (592)
+++++++|| ...|+......+.+.+++... ...+|++++++..
T Consensus 133 ~~~vliiDE-~~~l~~~~~~~Ll~~le~~~~-~~~~il~~~~~~~ 175 (353)
T 1sxj_D 133 PYKIIILDE-ADSMTADAQSALRRTMETYSG-VTRFCLICNYVTR 175 (353)
T ss_dssp SCEEEEETT-GGGSCHHHHHHHHHHHHHTTT-TEEEEEEESCGGG
T ss_pred CceEEEEEC-CCccCHHHHHHHHHHHHhcCC-CceEEEEeCchhh
Confidence 567999999 788998888888888776533 3346667777653
No 475
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=90.98 E-value=0.078 Score=53.97 Aligned_cols=21 Identities=38% Similarity=0.468 Sum_probs=19.1
Q ss_pred CEEECCCCCcHHHHHHHHhCC
Q 048028 1 MAILGASGAGKTTLMDALAGR 21 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~ 21 (592)
++|+|+||+|||||...|.++
T Consensus 147 vl~~G~sG~GKSt~a~~l~~~ 167 (314)
T 1ko7_A 147 VLITGDSGIGKSETALELIKR 167 (314)
T ss_dssp EEEEESTTSSHHHHHHHHHHT
T ss_pred EEEEeCCCCCHHHHHHHHHhc
Confidence 479999999999999999876
No 476
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=90.95 E-value=0.021 Score=53.40 Aligned_cols=22 Identities=32% Similarity=0.591 Sum_probs=19.5
Q ss_pred CEEECCCCCcHHHHHHHHhCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRI 22 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~ 22 (592)
++|+|++|+|||||++.+.+..
T Consensus 36 i~vvG~~~~GKSsli~~l~~~~ 57 (199)
T 3l0i_B 36 LLLIGDSGVGKSCLLLRFADDT 57 (199)
T ss_dssp EEEECCTTSCCTTTTTSSBCCC
T ss_pred EEEECCCCCCHHHHHHHHhcCC
Confidence 4799999999999999998754
No 477
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=90.94 E-value=0.095 Score=53.25 Aligned_cols=22 Identities=27% Similarity=0.469 Sum_probs=19.5
Q ss_pred CEEECCCCCcHHHHHHHHhCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRI 22 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~ 22 (592)
+.|+||+|||||||...|+...
T Consensus 13 i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 13 IFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp EEEECCTTSCHHHHHHHHHHHS
T ss_pred EEEECCCccCHHHHHHHHHHhC
Confidence 3689999999999999999764
No 478
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=90.79 E-value=0.092 Score=55.67 Aligned_cols=21 Identities=29% Similarity=0.461 Sum_probs=18.5
Q ss_pred CEEECCCCCcHHHHHHHHhCC
Q 048028 1 MAILGASGAGKTTLMDALAGR 21 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~ 21 (592)
+.|+|++||||||+.+.|+..
T Consensus 261 Iil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 261 VVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp EEEESCTTSSHHHHHHHHTGG
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 368999999999999999864
No 479
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=90.76 E-value=0.088 Score=54.50 Aligned_cols=22 Identities=36% Similarity=0.655 Sum_probs=19.6
Q ss_pred CEEECCCCCcHHHHHHHHhCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRI 22 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~ 22 (592)
++|+|++|+|||||++.|++.+
T Consensus 82 I~i~G~~G~GKSTl~~~L~~~l 103 (355)
T 3p32_A 82 VGITGVPGVGKSTAIEALGMHL 103 (355)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 4799999999999999998764
No 480
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=90.74 E-value=0.061 Score=51.08 Aligned_cols=21 Identities=38% Similarity=0.814 Sum_probs=18.0
Q ss_pred CEEECCCCCcHHHHHHH-HhCC
Q 048028 1 MAILGASGAGKTTLMDA-LAGR 21 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~-l~g~ 21 (592)
++|+|++|+|||||++. +.|.
T Consensus 18 i~v~G~~~~GKSsli~~~~~~~ 39 (221)
T 3gj0_A 18 LVLVGDGGTGKTTFVKRHLTGE 39 (221)
T ss_dssp EEEEECTTSSHHHHHTTBHHHH
T ss_pred EEEECCCCCCHHHHHHHHHcCC
Confidence 47999999999999998 5554
No 481
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=90.64 E-value=0.11 Score=49.90 Aligned_cols=23 Identities=43% Similarity=0.629 Sum_probs=19.8
Q ss_pred CEEECCCCCcHHHHHHHHhCCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRIE 23 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~ 23 (592)
++|.|++||||||+.+.|+..+.
T Consensus 9 i~~eG~~gsGKsT~~~~l~~~l~ 31 (213)
T 4edh_A 9 VTLEGPEGAGKSTNRDYLAERLR 31 (213)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHHHHH
Confidence 36889999999999999987654
No 482
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=90.62 E-value=0.087 Score=58.34 Aligned_cols=22 Identities=45% Similarity=0.697 Sum_probs=20.3
Q ss_pred CEEECCCCCcHHHHHHHHhCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRI 22 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~ 22 (592)
++|+|++|+|||||+|.|.|..
T Consensus 41 VaivG~pnvGKStLiN~L~g~~ 62 (592)
T 1f5n_A 41 VAIVGLYRTGKSYLMNKLAGKK 62 (592)
T ss_dssp EEEEEBTTSSHHHHHHHHTTCS
T ss_pred EEEECCCCCCHHHHHHhHcCCC
Confidence 5899999999999999999974
No 483
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=90.25 E-value=0.062 Score=58.17 Aligned_cols=22 Identities=36% Similarity=0.596 Sum_probs=20.0
Q ss_pred CEEECCCCCcHHHHHHHHhCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRI 22 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~ 22 (592)
++|+|++|+|||||+|.|+|..
T Consensus 246 V~ivG~pnvGKSSLln~L~~~~ 267 (482)
T 1xzp_A 246 MVIVGKPNVGKSTLLNRLLNED 267 (482)
T ss_dssp EEEECCHHHHTCHHHHHHHHHT
T ss_pred EEEECcCCCcHHHHHHHHHCCC
Confidence 5899999999999999999863
No 484
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=90.24 E-value=0.078 Score=54.74 Aligned_cols=21 Identities=24% Similarity=0.569 Sum_probs=19.1
Q ss_pred CEEECCCCCcHHHHHHHHhCC
Q 048028 1 MAILGASGAGKTTLMDALAGR 21 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~ 21 (592)
++|+|.+++|||||++.|++.
T Consensus 161 V~lvG~~nvGKSTLln~L~~~ 181 (342)
T 1lnz_A 161 VGLVGFPSVGKSTLLSVVSSA 181 (342)
T ss_dssp EEEESSTTSSHHHHHHHSEEE
T ss_pred eeeeCCCCCCHHHHHHHHHcC
Confidence 479999999999999999875
No 485
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=90.20 E-value=0.12 Score=51.00 Aligned_cols=20 Identities=30% Similarity=0.436 Sum_probs=18.4
Q ss_pred EEECCCCCcHHHHHHHHhCC
Q 048028 2 AILGASGAGKTTLMDALAGR 21 (592)
Q Consensus 2 aI~GpsGaGKSTLL~~l~g~ 21 (592)
.|.||+|+|||||.+.++..
T Consensus 68 Ll~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 68 LLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp EEECSTTSSHHHHHHHHHHH
T ss_pred EEECCCCCcHHHHHHHHHHH
Confidence 58899999999999999875
No 486
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=90.15 E-value=0.084 Score=57.03 Aligned_cols=22 Identities=41% Similarity=0.656 Sum_probs=18.1
Q ss_pred CEEECCCCCcHHHHHHHHhCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRI 22 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~ 22 (592)
++|+|++|+|||||+|.|.|..
T Consensus 236 V~ivG~~nvGKSSLln~L~~~~ 257 (476)
T 3gee_A 236 TVIAGKPNAGKSTLLNTLLGQE 257 (476)
T ss_dssp EEEECCTTSSHHHHHHHCC---
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 5799999999999999999863
No 487
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=90.13 E-value=0.12 Score=58.56 Aligned_cols=22 Identities=36% Similarity=0.644 Sum_probs=20.3
Q ss_pred CEEECCCCCcHHHHHHHHhCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRI 22 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~ 22 (592)
++|+|++|+|||||+|.|.|..
T Consensus 72 V~VvG~~naGKSSLlNaLlg~~ 93 (695)
T 2j69_A 72 LLVLGDMKRGKSTFLNALIGEN 93 (695)
T ss_dssp EEEECCTTSCHHHHHHHHHTSS
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 5899999999999999999974
No 488
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=90.08 E-value=0.12 Score=50.18 Aligned_cols=23 Identities=26% Similarity=0.421 Sum_probs=20.1
Q ss_pred CEEECCCCCcHHHHHHHHhCCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRIE 23 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~ 23 (592)
++|-|+.||||||+.+.|+..++
T Consensus 5 i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 5 LSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp EEEEECTTSSHHHHHHHHHHHCT
T ss_pred EEEEcCCCCCHHHHHHHHHHHcC
Confidence 46899999999999999997753
No 489
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=90.03 E-value=0.1 Score=57.36 Aligned_cols=22 Identities=23% Similarity=0.389 Sum_probs=20.2
Q ss_pred CEEECCCCCcHHHHHHHHhCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRI 22 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~ 22 (592)
++|+|..|+|||||+|.|.|..
T Consensus 68 V~vvG~~n~GKSTLIN~Llg~~ 89 (550)
T 2qpt_A 68 VLVAGQYSTGKTSFIQYLLEQE 89 (550)
T ss_dssp EEEEEBTTSCHHHHHHHHHTSC
T ss_pred EEEECCCCCCHHHHHHHHhCCc
Confidence 5899999999999999999874
No 490
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=89.96 E-value=0.13 Score=54.24 Aligned_cols=23 Identities=35% Similarity=0.601 Sum_probs=20.4
Q ss_pred CEEECCCCCcHHHHHHHHhCCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRIE 23 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~ 23 (592)
++++|++|+|||||++.|+|...
T Consensus 11 I~vvG~~~~GKSTLi~~L~~~~~ 33 (403)
T 3sjy_A 11 IGVVGHVDHGKTTLVQAITGIWT 33 (403)
T ss_dssp EEEECSTTSSHHHHHHHHHSCCC
T ss_pred EEEECCCCCCHHHHHHHHhCccc
Confidence 47999999999999999999643
No 491
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=89.86 E-value=0.12 Score=50.37 Aligned_cols=23 Identities=30% Similarity=0.579 Sum_probs=20.0
Q ss_pred CEEECCCCCcHHHHHHHHhCCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRIE 23 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~ 23 (592)
++|.|++||||||+.+.|+..+.
T Consensus 30 i~~eG~~GsGKsT~~~~l~~~l~ 52 (236)
T 3lv8_A 30 IVIEGLEGAGKSTAIQVVVETLQ 52 (236)
T ss_dssp EEEEESTTSCHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 36899999999999999987654
No 492
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=89.84 E-value=0.1 Score=50.55 Aligned_cols=23 Identities=35% Similarity=0.601 Sum_probs=16.7
Q ss_pred CEEECCCCCcHHHHHHHHhCCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRIE 23 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~ 23 (592)
+.|.|++||||||+.+.|+..+.
T Consensus 28 I~~eG~~GsGKsT~~~~l~~~l~ 50 (227)
T 3v9p_A 28 ITFEGIDGAGKTTHLQWFCDRLQ 50 (227)
T ss_dssp EEEECCC---CHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 36889999999999999987653
No 493
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=89.72 E-value=0.21 Score=47.17 Aligned_cols=72 Identities=21% Similarity=0.091 Sum_probs=52.4
Q ss_pred HHHHHHHHHHh--hCCcEEEEeCCCCC--CCHHHHHHHHHHHHHHHHcCCEEEEEecCChhHHHhhhceEEEecCCe
Q 048028 117 RRRVSIGIHII--HDPILLFLDEPTSG--LDSTSAFMVVNVLQRIAKSGSIVIMSIHQPSYRILSLLDRLIILSHGQ 189 (592)
Q Consensus 117 rqRv~ia~~L~--~~p~lllLDEPtsg--LD~~~~~~i~~~l~~la~~g~tvi~~~H~~~~~i~~~~D~v~ll~~G~ 189 (592)
++.+.-++..+ .+.++++|||.+.. ++-....++++.|++- -++..||+|.+.+..++.+++|-|.-|..-+
T Consensus 106 ~~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~R-p~~~~vIlTGr~ap~~l~e~AD~VTem~~vk 181 (196)
T 1g5t_A 106 MAVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNAR-PGHQTVIITGRGCHRDILDLADTVSELRPVK 181 (196)
T ss_dssp HHHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTS-CTTCEEEEECSSCCHHHHHHCSEEEECCCSC
T ss_pred HHHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhC-cCCCEEEEECCCCcHHHHHhCcceeeeccee
Confidence 34455566666 56799999999763 3444455677777642 2467899999999999999999999987643
No 494
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=89.72 E-value=0.12 Score=54.34 Aligned_cols=22 Identities=36% Similarity=0.604 Sum_probs=19.5
Q ss_pred CEEECCCCCcHHHHHHHHhCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRI 22 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~ 22 (592)
++|+||+|||||||.+.|+...
T Consensus 5 i~i~GptgsGKttla~~La~~~ 26 (409)
T 3eph_A 5 IVIAGTTGVGKSQLSIQLAQKF 26 (409)
T ss_dssp EEEEECSSSSHHHHHHHHHHHH
T ss_pred EEEECcchhhHHHHHHHHHHHC
Confidence 4799999999999999998764
No 495
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=89.68 E-value=0.13 Score=51.73 Aligned_cols=21 Identities=24% Similarity=0.464 Sum_probs=18.5
Q ss_pred EEECCCCCcHHHHHHHHhCCC
Q 048028 2 AILGASGAGKTTLMDALAGRI 22 (592)
Q Consensus 2 aI~GpsGaGKSTLL~~l~g~~ 22 (592)
.|.||+|+|||+|.++|+...
T Consensus 40 Ll~GppGtGKT~la~aiA~~l 60 (293)
T 3t15_A 40 GIWGGKGQGKSFQCELVFRKM 60 (293)
T ss_dssp EEEECTTSCHHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHh
Confidence 466999999999999999764
No 496
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=89.66 E-value=0.18 Score=52.25 Aligned_cols=127 Identities=14% Similarity=0.183 Sum_probs=68.3
Q ss_pred CEEECCCCCcHHHHHHHHhCCCCCCCce----eEEEEC----CEecC--cccccceeEEEccCCCCCCCCCHHHHHHHHH
Q 048028 1 MAILGASGAGKTTLMDALAGRIEKESLQ----GAVTLN----GEVLE--SKLLKIISAYVMQDDLLFPMLTVEETLMFAA 70 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~~~~~~----G~I~i~----g~~~~--~~~~~~~~~yv~Q~~~l~~~lTV~E~l~f~~ 70 (592)
++|+||||||||||+++|+|++++ .+ |++.++ |.+.. .... +.+++++|+..++. .|+.||+.+..
T Consensus 173 ~~IvG~nGsGKSTLlk~L~gl~~~--~~~~e~G~i~i~~~~~~~~~~~~~~~~-~~I~~~~q~~~~~~-~t~~~nl~~~~ 248 (365)
T 1lw7_A 173 VAILGGESSGKSVLVNKLAAVFNT--TSAWEYGREFVFEKLGGDEQAMQYSDY-PQMALGHQRYIDYA-VRHSHKIAFID 248 (365)
T ss_dssp EEEECCTTSHHHHHHHHHHHHTTC--EEECCTTHHHHHHSSSSCTTSSCTTTH-HHHHHHHHHHHHHH-HHHCSSEEEES
T ss_pred EEEECCCCCCHHHHHHHHHHHhCC--CcchhhHHHHHHhhcCCCcccCChhHH-HHHHHHHHHHHHHH-HhccCCEEEEe
Confidence 489999999999999999999874 45 777663 43321 1222 33677777654332 35555543210
Q ss_pred HccCCCCCCHHHH-----------HHHHHHHHHHcCCccc-ccc---cccCCCCCCCCHHHHHHHHHHHHH---hh--CC
Q 048028 71 EFRLPRSVTKTKK-----------QERVEALINQLGLRSA-AKT---FIGDERHRGVSGGERRRVSIGIHI---IH--DP 130 (592)
Q Consensus 71 ~l~~~~~~~~~~~-----------~~~v~~~l~~lgL~~~-~~~---~vg~~~~~~LSgGerqRv~ia~~L---~~--~p 130 (592)
.+.... +..+..++...+.+-. .|- +.. +....+|+||+||..++++| .. ++
T Consensus 249 -------~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lllLdE~~~p~~-~~g~~~sld~~~r~~l~~~l~~l~~~~~~ 320 (365)
T 1lw7_A 249 -------TDFITTQAFCIQYEGKAHPFLDSMIKEYPFDVTILLKNNTEWV-DDGLRSLGSQKQRQQFQQLLKKLLDKYKV 320 (365)
T ss_dssp -------SCHHHHHHHHHHHHSCCCHHHHHHHHHSCCSEEEEEECCCC------------CCSHHHHHHHHHHHHHGGGC
T ss_pred -------CCchHHHHHHHHHcCCCCHHHHHHHhhcCCCEEEECCCCCCcc-cCCCcCCccHHHHHHHHHHHHHHHHHcCC
Confidence 011000 0112222222222110 010 110 11134899999999999999 77 89
Q ss_pred cEEEEeCCC
Q 048028 131 ILLFLDEPT 139 (592)
Q Consensus 131 ~lllLDEPt 139 (592)
+++++|||+
T Consensus 321 ~ililde~~ 329 (365)
T 1lw7_A 321 PYIEIESPS 329 (365)
T ss_dssp CCEEEECSS
T ss_pred CEEEeCCCC
Confidence 999999997
No 497
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=89.65 E-value=0.14 Score=54.59 Aligned_cols=22 Identities=27% Similarity=0.659 Sum_probs=20.0
Q ss_pred CEEECCCCCcHHHHHHHHhCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRI 22 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~ 22 (592)
++|+|.+|+|||||+|.+.|..
T Consensus 178 i~lvG~~nvGKSSLin~l~~~~ 199 (436)
T 2hjg_A 178 FCLIGRPNVGKSSLVNAMLGEE 199 (436)
T ss_dssp EEEECSTTSSHHHHHHHHHTST
T ss_pred EEEEcCCCCCHHHHHHHHhCCC
Confidence 4799999999999999999864
No 498
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=89.61 E-value=0.13 Score=51.49 Aligned_cols=22 Identities=36% Similarity=0.591 Sum_probs=19.3
Q ss_pred EEECCCCCcHHHHHHHHhCCCC
Q 048028 2 AILGASGAGKTTLMDALAGRIE 23 (592)
Q Consensus 2 aI~GpsGaGKSTLL~~l~g~~~ 23 (592)
.|.||+|+|||||.+.++..+.
T Consensus 71 ll~G~~GtGKT~la~~la~~l~ 92 (309)
T 3syl_A 71 SFTGNPGTGKTTVALKMAGLLH 92 (309)
T ss_dssp EEEECTTSSHHHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHHH
Confidence 5899999999999999987653
No 499
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=89.61 E-value=0.14 Score=50.98 Aligned_cols=21 Identities=33% Similarity=0.555 Sum_probs=19.1
Q ss_pred EEECCCCCcHHHHHHHHhCCC
Q 048028 2 AILGASGAGKTTLMDALAGRI 22 (592)
Q Consensus 2 aI~GpsGaGKSTLL~~l~g~~ 22 (592)
.|.||+|+|||||.+.++...
T Consensus 54 ll~G~~GtGKT~la~~la~~l 74 (310)
T 1ofh_A 54 LMIGPTGVGKTEIARRLAKLA 74 (310)
T ss_dssp EEECCTTSSHHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHh
Confidence 588999999999999999765
No 500
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=89.61 E-value=0.087 Score=51.87 Aligned_cols=23 Identities=35% Similarity=0.492 Sum_probs=19.9
Q ss_pred CEEECCCCCcHHHHHHHHhCCCC
Q 048028 1 MAILGASGAGKTTLMDALAGRIE 23 (592)
Q Consensus 1 ~aI~GpsGaGKSTLL~~l~g~~~ 23 (592)
++|.|+.||||||+.+.|+..+.
T Consensus 27 I~ieG~~GsGKST~~~~L~~~l~ 49 (263)
T 1p5z_B 27 ISIEGNIAAGKSTFVNILKQLCE 49 (263)
T ss_dssp EEEECSTTSSHHHHHTTTGGGCT
T ss_pred EEEECCCCCCHHHHHHHHHHhcC
Confidence 47899999999999999987653
Done!