BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048030
(93 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q28IQ9|CIRBP_XENTR Cold-inducible RNA-binding protein OS=Xenopus tropicalis GN=cirbp
PE=2 SV=1
Length = 166
Score = 70.1 bits (170), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 33/73 (45%), Positives = 48/73 (65%)
Query: 1 VSFSTTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLL 60
++F TT+E L FS++GQV E ++ D+ RS+G+G+VTF E+A+ A+ MNGK +
Sbjct: 13 LNFETTEESLEQVFSKYGQVAEVVVVKDRESKRSRGFGFVTFENPEDAKDAMMAMNGKSV 72
Query: 61 DGRVIFVDNVRPS 73
DGR I VD S
Sbjct: 73 DGRQIRVDQAGKS 85
>sp|Q9PTX2|CIRBP_LITCT Cold-inducible RNA-binding protein OS=Lithobates catesbeiana
GN=cirbp PE=2 SV=1
Length = 164
Score = 69.7 bits (169), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 32/73 (43%), Positives = 48/73 (65%)
Query: 1 VSFSTTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLL 60
+SF T ++ L FS++GQ+ E ++ D+ RS+G+G+VTF E+A+ A+A MNGK +
Sbjct: 13 LSFDTDEQCLETVFSKYGQIQEVVVVKDRETKRSRGFGFVTFENCEDAKDAMAGMNGKTV 72
Query: 61 DGRVIFVDNVRPS 73
DGR I VD S
Sbjct: 73 DGRQIRVDQAGKS 85
>sp|Q9LIS2|RBG4_ARATH Glycine-rich RNA-binding protein 4, mitochondrial OS=Arabidopsis
thaliana GN=RBG4 PE=2 SV=1
Length = 136
Score = 69.3 bits (168), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 32/68 (47%), Positives = 48/68 (70%)
Query: 1 VSFSTTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLL 60
+S+ T L AF+ FG+VTEAT+I D+ RS+G+G+V+FS E+ A A+ +M+GK L
Sbjct: 42 LSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIKEMDGKEL 101
Query: 61 DGRVIFVD 68
+GR I V+
Sbjct: 102 NGRQIRVN 109
>sp|Q99070|GRP2_SORBI Glycine-rich RNA-binding protein 2 OS=Sorghum bicolor GN=GRP2
PE=2 SV=1
Length = 168
Score = 68.9 bits (167), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 31/68 (45%), Positives = 48/68 (70%)
Query: 1 VSFSTTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLL 60
++++T E L AF+ FGQV ++ +I D+ RS+G+G+VTFS+E+ A+ +MNGK L
Sbjct: 15 LAWATNNETLEQAFANFGQVIDSKVITDRETGRSRGFGFVTFSSEQSMLDAIENMNGKEL 74
Query: 61 DGRVIFVD 68
DGR I V+
Sbjct: 75 DGRNITVN 82
>sp|Q99069|GRP1_SORBI Glycine-rich RNA-binding protein 1 (Fragment) OS=Sorghum bicolor
GN=GRP1 PE=2 SV=1
Length = 142
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 32/59 (54%), Positives = 43/59 (72%)
Query: 10 LADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVD 68
L AFS +G+V E+ II+D+ RS+G+G+VTFSTEE + A+ MNGK LDGR I V+
Sbjct: 3 LHSAFSTYGEVLESKIILDRETQRSRGFGFVTFSTEEAMRSAIEGMNGKELDGRNITVN 61
>sp|P98179|RBM3_HUMAN Putative RNA-binding protein 3 OS=Homo sapiens GN=RBM3 PE=1 SV=1
Length = 157
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 49/75 (65%)
Query: 1 VSFSTTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLL 60
++F+T ++ L D FS FG ++E ++ D+ RS+G+G++TF+ E A A+ MNG+ L
Sbjct: 13 LNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASVAMRAMNGESL 72
Query: 61 DGRVIFVDNVRPSRR 75
DGR I VD+ S R
Sbjct: 73 DGRQIRVDHAGKSAR 87
>sp|O89086|RBM3_MOUSE Putative RNA-binding protein 3 OS=Mus musculus GN=Rbm3 PE=1 SV=1
Length = 153
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 48/73 (65%)
Query: 1 VSFSTTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLL 60
++F+T ++ L D FS FG ++E ++ D+ RS+G+G++TF+ E A A+ MNG+ L
Sbjct: 13 LNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDAMRAMNGESL 72
Query: 61 DGRVIFVDNVRPS 73
DGR I VD+ S
Sbjct: 73 DGRQIRVDHAGKS 85
>sp|Q9DED4|CIRBB_XENLA Cold-inducible RNA-binding protein B OS=Xenopus laevis GN=cirbp-b
PE=1 SV=1
Length = 166
Score = 67.4 bits (163), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 48/73 (65%)
Query: 1 VSFSTTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLL 60
++F T +E L FS++GQ++E ++ D+ RS+G+G+VTF ++A+ A+ MNGK +
Sbjct: 12 LNFDTNEESLEQVFSKYGQISEVVVVKDRETKRSRGFGFVTFENPDDAKDAMMAMNGKAV 71
Query: 61 DGRVIFVDNVRPS 73
DGR I VD S
Sbjct: 72 DGRQIRVDQAGKS 84
>sp|Q03251|RBG8_ARATH Glycine-rich RNA-binding protein 8 OS=Arabidopsis thaliana
GN=RBG8 PE=1 SV=1
Length = 169
Score = 67.0 bits (162), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 32/68 (47%), Positives = 47/68 (69%)
Query: 1 VSFSTTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLL 60
++++T E L FSQFG V ++ II D+ RS+G+G+VTF E+ + A+ +MNGK L
Sbjct: 13 LAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMNGKEL 72
Query: 61 DGRVIFVD 68
DGRVI V+
Sbjct: 73 DGRVITVN 80
>sp|Q03878|GRP1_DAUCA Glycine-rich RNA-binding protein OS=Daucus carota PE=2 SV=1
Length = 157
Score = 66.2 bits (160), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 48/72 (66%)
Query: 1 VSFSTTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLL 60
++++T E L AFSQFG +T++ II D+ RS+G+G+VTF E+ + A+ MNG+ L
Sbjct: 13 LAWATNDESLEQAFSQFGDITDSKIINDRETGRSRGFGFVTFKDEKSMRDAIEGMNGQEL 72
Query: 61 DGRVIFVDNVRP 72
DGR I V+ +
Sbjct: 73 DGRNITVNEAQS 84
>sp|Q925G0|RBM3_RAT Putative RNA-binding protein 3 OS=Rattus norvegicus GN=Rbm3 PE=1
SV=2
Length = 155
Score = 66.2 bits (160), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 48/75 (64%)
Query: 1 VSFSTTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLL 60
++F+T ++ L D FS FG ++E ++ D+ RS+G+G++TF+ E A + MNG+ L
Sbjct: 13 LNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDVMRAMNGESL 72
Query: 61 DGRVIFVDNVRPSRR 75
DGR I VD+ S R
Sbjct: 73 DGRQIRVDHAGKSAR 87
>sp|P60825|CIRBP_RAT Cold-inducible RNA-binding protein OS=Rattus norvegicus GN=Cirbp
PE=2 SV=1
Length = 172
Score = 66.2 bits (160), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 48/73 (65%)
Query: 1 VSFSTTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLL 60
+SF T ++ L FS++GQ++E ++ D+ RS+G+G+VTF ++A+ A+ MNGK +
Sbjct: 13 LSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSV 72
Query: 61 DGRVIFVDNVRPS 73
DGR I VD S
Sbjct: 73 DGRQIRVDQAGKS 85
>sp|P60824|CIRBP_MOUSE Cold-inducible RNA-binding protein OS=Mus musculus GN=Cirbp PE=1
SV=1
Length = 172
Score = 66.2 bits (160), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 48/73 (65%)
Query: 1 VSFSTTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLL 60
+SF T ++ L FS++GQ++E ++ D+ RS+G+G+VTF ++A+ A+ MNGK +
Sbjct: 13 LSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSV 72
Query: 61 DGRVIFVDNVRPS 73
DGR I VD S
Sbjct: 73 DGRQIRVDQAGKS 85
>sp|P60826|CIRBP_CRIGR Cold-inducible RNA-binding protein OS=Cricetulus griseus GN=CIRBP
PE=2 SV=1
Length = 172
Score = 66.2 bits (160), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 48/73 (65%)
Query: 1 VSFSTTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLL 60
+SF T ++ L FS++GQ++E ++ D+ RS+G+G+VTF ++A+ A+ MNGK +
Sbjct: 13 LSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSV 72
Query: 61 DGRVIFVDNVRPS 73
DGR I VD S
Sbjct: 73 DGRQIRVDQAGKS 85
>sp|Q5RF83|CIRBP_PONAB Cold-inducible RNA-binding protein OS=Pongo abelii GN=CIRBP PE=2
SV=1
Length = 172
Score = 66.2 bits (160), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 48/73 (65%)
Query: 1 VSFSTTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLL 60
+SF T ++ L FS++GQ++E ++ D+ RS+G+G+VTF ++A+ A+ MNGK +
Sbjct: 13 LSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSV 72
Query: 61 DGRVIFVDNVRPS 73
DGR I VD S
Sbjct: 73 DGRQIRVDQAGKS 85
>sp|Q14011|CIRBP_HUMAN Cold-inducible RNA-binding protein OS=Homo sapiens GN=CIRBP PE=1
SV=1
Length = 172
Score = 66.2 bits (160), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 48/73 (65%)
Query: 1 VSFSTTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLL 60
+SF T ++ L FS++GQ++E ++ D+ RS+G+G+VTF ++A+ A+ MNGK +
Sbjct: 13 LSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSV 72
Query: 61 DGRVIFVDNVRPS 73
DGR I VD S
Sbjct: 73 DGRQIRVDQAGKS 85
>sp|P10979|GRPA_MAIZE Glycine-rich RNA-binding, abscisic acid-inducible protein OS=Zea
mays GN=RAB15 PE=1 SV=1
Length = 157
Score = 65.5 bits (158), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 49/68 (72%)
Query: 1 VSFSTTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLL 60
++++T+ E L +AF+ +G++ ++ +I D+ RS+G+G+VTFS+E A+ +MNGK L
Sbjct: 15 LAWATSNESLENAFASYGEILDSKVITDRETGRSRGFGFVTFSSENSMLDAIENMNGKEL 74
Query: 61 DGRVIFVD 68
DGR I V+
Sbjct: 75 DGRNITVN 82
>sp|Q9SVM8|RBG2_ARATH Glycine-rich RNA-binding protein 2, mitochondrial OS=Arabidopsis
thaliana GN=RBG2 PE=1 SV=1
Length = 158
Score = 65.5 bits (158), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 33/75 (44%), Positives = 50/75 (66%), Gaps = 2/75 (2%)
Query: 1 VSFSTTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLL 60
+S+ T L DAF+ FG V +A +I+D+ RS+G+G+V F+ E A A+++M+GK L
Sbjct: 42 LSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKEL 101
Query: 61 DGRVIFVD--NVRPS 73
+GR I V+ N RPS
Sbjct: 102 NGRHIRVNPANDRPS 116
>sp|O93235|CIRBA_XENLA Cold-inducible RNA-binding protein A OS=Xenopus laevis GN=cirbp-a
PE=1 SV=2
Length = 166
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 49/73 (67%)
Query: 1 VSFSTTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLL 60
++F T ++ L AF+++G+++E ++ D+ RS+G+G+VTF ++A+ A+ MNGK +
Sbjct: 12 LNFETNEDCLEQAFTKYGRISEVVVVKDRETKRSRGFGFVTFENVDDAKDAMMAMNGKSV 71
Query: 61 DGRVIFVDNVRPS 73
DGR I VD S
Sbjct: 72 DGRQIRVDQAGKS 84
>sp|Q43472|GRP_HORVU Glycine-rich RNA-binding protein blt801 OS=Hordeum vulgare
GN=blt801 PE=1 SV=1
Length = 161
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 51/74 (68%)
Query: 1 VSFSTTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLL 60
+ ++T + L +AFS++G V ++ II D+ RS+G+G+VTF+++E ++A+ MNG+ L
Sbjct: 13 LRWATDDQSLQNAFSKYGDVIDSKIITDRETGRSRGFGFVTFASDEAMRQAIEAMNGQDL 72
Query: 61 DGRVIFVDNVRPSR 74
DGR I V+ + R
Sbjct: 73 DGRNITVNEAQSRR 86
>sp|Q05966|GRP10_BRANA Glycine-rich RNA-binding protein 10 OS=Brassica napus GN=GRP10
PE=2 SV=1
Length = 169
Score = 63.2 bits (152), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 47/72 (65%)
Query: 1 VSFSTTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLL 60
++++T L FSQFG+V ++ II D+ RS+G+G+VTF E+ + A+ +MNGK L
Sbjct: 13 LAWATGDAELERTFSQFGEVIDSKIINDRETGRSRGFGFVTFKDEKSMKDAIDEMNGKEL 72
Query: 61 DGRVIFVDNVRP 72
DGR I V+ +
Sbjct: 73 DGRTITVNEAQS 84
>sp|P49311|GRP2_SINAL Glycine-rich RNA-binding protein GRP2A OS=Sinapis alba PE=2 SV=1
Length = 169
Score = 62.4 bits (150), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 47/68 (69%)
Query: 1 VSFSTTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLL 60
++++T + L AFSQFG++ ++ II D+ RS+G+G+VTF E+ + A+ MNG+ L
Sbjct: 15 LAWATDERSLETAFSQFGELVDSKIINDRETGRSRGFGFVTFKDEKSMKDAIEGMNGQDL 74
Query: 61 DGRVIFVD 68
DGR I V+
Sbjct: 75 DGRSITVN 82
>sp|Q98SP8|EPABA_XENLA Embryonic polyadenylate-binding protein A OS=Xenopus laevis
GN=epabp-a PE=1 SV=2
Length = 629
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 50/83 (60%), Gaps = 3/83 (3%)
Query: 10 LADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDN 69
L + FS FG ++MD RS+G+G+V + EEAQKA+++MNGK ++GR+I+V
Sbjct: 207 LREIFSAFGNTLSVKVMMDDS-GRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYVG- 264
Query: 70 VRPSRRYNTDAPLARQLPQSPEE 92
R +R + L R+ Q +E
Sbjct: 265 -RAQKRIERQSELKRKFEQIKQE 286
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 43/72 (59%), Gaps = 3/72 (4%)
Query: 4 STTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGR 63
S + L D FS FG + ++ D+ + S+GYG+V F T E A +A+ MNG LL+ R
Sbjct: 109 SIDNKALYDTFSAFGNILSCKVVCDE--HGSRGYGFVHFETHEAANRAIQTMNGMLLNDR 166
Query: 64 VIFVDNVRPSRR 75
+FV + + SRR
Sbjct: 167 KVFVGHFK-SRR 177
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 38/58 (65%), Gaps = 2/58 (3%)
Query: 10 LADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 67
L F +G +T A ++ + G SKG+G+V FS+ EEA KA+ +MNG+++ + ++V
Sbjct: 310 LRKEFLPYGTITSAKVMTEGG--HSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYV 365
>sp|P27476|NSR1_YEAST Nuclear localization sequence-binding protein OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=NSR1 PE=1
SV=1
Length = 414
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 41/68 (60%)
Query: 1 VSFSTTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLL 60
+S+S E L F G V A +I ++G +RS+GYGYV F + A+KA+ +M GK +
Sbjct: 175 LSWSIDDEWLKKEFEHIGGVIGARVIYERGTDRSRGYGYVDFENKSYAEKAIQEMQGKEI 234
Query: 61 DGRVIFVD 68
DGR I D
Sbjct: 235 DGRPINCD 242
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 44/79 (55%), Gaps = 2/79 (2%)
Query: 1 VSFSTTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLL 60
+SF+ ++ + + F++ G+V I + KG+GYV FS E+A+KAL + G+ +
Sbjct: 274 LSFNADRDAIFELFAKHGEVVSVRIPTHPETEQPKGFGYVQFSNMEDAKKALDALQGEYI 333
Query: 61 DGRVIFVDNVRPSRRYNTD 79
D R + +D P R N D
Sbjct: 334 DNRPVRLDFSSP--RPNND 350
>sp|Q5RC80|RBM39_PONAB RNA-binding protein 39 OS=Pongo abelii GN=RBM39 PE=2 SV=1
Length = 524
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 44/70 (62%)
Query: 1 VSFSTTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLL 60
+ F+ T++ML F FG++ ++MD RSKGYG++TFS E A+KAL +NG L
Sbjct: 257 LHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFEL 316
Query: 61 DGRVIFVDNV 70
GR + V +V
Sbjct: 317 AGRPMKVGHV 326
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 19/33 (57%)
Query: 10 LADAFSQFGQVTEATIIMDKGKNRSKGYGYVTF 42
L + FS G+V + +I D+ RSKG YV F
Sbjct: 169 LEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEF 201
>sp|Q14498|RBM39_HUMAN RNA-binding protein 39 OS=Homo sapiens GN=RBM39 PE=1 SV=2
Length = 530
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 44/70 (62%)
Query: 1 VSFSTTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLL 60
+ F+ T++ML F FG++ ++MD RSKGYG++TFS E A+KAL +NG L
Sbjct: 257 LHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFEL 316
Query: 61 DGRVIFVDNV 70
GR + V +V
Sbjct: 317 AGRPMKVGHV 326
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 19/33 (57%)
Query: 10 LADAFSQFGQVTEATIIMDKGKNRSKGYGYVTF 42
L + FS G+V + +I D+ RSKG YV F
Sbjct: 169 LEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEF 201
>sp|Q8VH51|RBM39_MOUSE RNA-binding protein 39 OS=Mus musculus GN=Rbm39 PE=1 SV=2
Length = 530
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 44/70 (62%)
Query: 1 VSFSTTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLL 60
+ F+ T++ML F FG++ ++MD RSKGYG++TFS E A+KAL +NG L
Sbjct: 257 LHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFEL 316
Query: 61 DGRVIFVDNV 70
GR + V +V
Sbjct: 317 AGRPMKVGHV 326
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 19/33 (57%)
Query: 10 LADAFSQFGQVTEATIIMDKGKNRSKGYGYVTF 42
L + FS G+V + +I D+ RSKG YV F
Sbjct: 169 LEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEF 201
>sp|Q9H361|PABP3_HUMAN Polyadenylate-binding protein 3 OS=Homo sapiens GN=PABPC3 PE=1 SV=2
Length = 631
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 28/60 (46%), Positives = 43/60 (71%), Gaps = 2/60 (3%)
Query: 8 EMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 67
E L AFS FG +T A ++M+ G RSKG+G+V FS+ EEA KA+ +MNG+++ + ++V
Sbjct: 308 ERLRKAFSPFGTITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 39/64 (60%), Gaps = 2/64 (3%)
Query: 4 STTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGR 63
S + L D S FG + ++ D+ N SKGYG+V F T E A++A+ MNG LL+GR
Sbjct: 109 SINNKALYDTVSAFGNILSCNVVCDE--NGSKGYGFVHFETHEAAERAIKKMNGMLLNGR 166
Query: 64 VIFV 67
+FV
Sbjct: 167 KVFV 170
Score = 56.6 bits (135), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 40/60 (66%), Gaps = 1/60 (1%)
Query: 8 EMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 67
E L D F +FG ++ D+ +SKG+G+V+F E+AQKA+ +MNGK L+G+ I+V
Sbjct: 205 ERLKDLFGKFGPALSVKVMTDES-GKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263
>sp|Q43349|ROC2_ARATH 29 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana
GN=RBP29 PE=1 SV=2
Length = 342
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 46/76 (60%), Gaps = 2/76 (2%)
Query: 1 VSFSTTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLL 60
+S+ L + F++ G+V EA +I D+ RSKG+G+VT S+ +E QKA+ +NG L
Sbjct: 264 LSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSLNGADL 323
Query: 61 DGRVIFVD--NVRPSR 74
DGR I V RP R
Sbjct: 324 DGRQIRVSEAEARPPR 339
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 36/72 (50%)
Query: 1 VSFSTTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLL 60
+SF+ LA F G V +I DK RS+G+G+VT ST E + A NG
Sbjct: 106 LSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQFNGYEF 165
Query: 61 DGRVIFVDNVRP 72
+GR + V+ P
Sbjct: 166 EGRPLRVNAGPP 177
>sp|Q6DEY7|EPAB_XENTR Embryonic polyadenylate-binding protein OS=Xenopus tropicalis
GN=epabp PE=2 SV=1
Length = 629
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 49/83 (59%), Gaps = 3/83 (3%)
Query: 10 LADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDN 69
L + FS FG ++MD RS+G+G+V + EEAQKA+++MNGK ++GR+I+V
Sbjct: 207 LREIFSAFGNTLSVKVMMDD-TGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYVG- 264
Query: 70 VRPSRRYNTDAPLARQLPQSPEE 92
R +R L R+ Q +E
Sbjct: 265 -RAQKRIERQGELKRKFEQIKQE 286
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 44/72 (61%), Gaps = 3/72 (4%)
Query: 4 STTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGR 63
S + L D FS FG + ++ D+ + S+GYG+V F T+E A +A+ MNG LL+ R
Sbjct: 109 SIDNKALYDTFSAFGNILSCKVVCDE--HGSRGYGFVHFETQEAANRAIQTMNGMLLNDR 166
Query: 64 VIFVDNVRPSRR 75
+FV + + SRR
Sbjct: 167 KVFVGHFK-SRR 177
Score = 52.8 bits (125), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 39/58 (67%), Gaps = 2/58 (3%)
Query: 10 LADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 67
L FS +G +T A ++ + G SKG+G+V FS+ EEA KA+ +MNG+++ + ++V
Sbjct: 310 LRKEFSPYGTITSAKVMTEGG--HSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYV 365
>sp|P49310|GRP1_SINAL Glycine-rich RNA-binding protein GRP1A OS=Sinapis alba PE=2 SV=1
Length = 166
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 46/68 (67%)
Query: 1 VSFSTTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLL 60
++++T L AFSQ+G+V ++ II D+ RS+G+G+VTF E+ + A+ MNG+ L
Sbjct: 15 LAWATDDRALETAFSQYGEVLDSKIINDRETGRSRGFGFVTFKDEKSMKDAIEGMNGQDL 74
Query: 61 DGRVIFVD 68
DGR I V+
Sbjct: 75 DGRSITVN 82
>sp|P19682|ROC3_NICSY 28 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris
PE=1 SV=1
Length = 276
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 44/69 (63%)
Query: 10 LADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDN 69
L FS+ G+V A ++ D+ RS+G+G+VT S+E E +A+A+++G+ LDGR I V+
Sbjct: 207 LEQVFSEHGKVVSARVVFDRESGRSRGFGFVTMSSEAEMSEAIANLDGQTLDGRTIRVNA 266
Query: 70 VRPSRRYNT 78
R NT
Sbjct: 267 AEERPRRNT 275
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 45/89 (50%), Gaps = 5/89 (5%)
Query: 1 VSFSTTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALA-----DM 55
+ + E LA F Q G V A +I ++ +RS+G+G+VT ST EEA KA+ D+
Sbjct: 104 LPYDIDSEGLAQLFQQAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEADKAVELYSQYDL 163
Query: 56 NGKLLDGRVIFVDNVRPSRRYNTDAPLAR 84
NG+LL RP R T P R
Sbjct: 164 NGRLLTVNKAAPRGSRPERAPRTFQPTYR 192
>sp|Q6GR16|EPABB_XENLA Embryonic polyadenylate-binding protein B OS=Xenopus laevis
GN=epabp-b PE=2 SV=1
Length = 629
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 48/83 (57%), Gaps = 3/83 (3%)
Query: 10 LADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDN 69
L + FS FG ++MD RS+G+G+V + EEAQKA+ +MNGK ++GR+++V
Sbjct: 207 LKEIFSAFGNTLSVKVMMDNS-GRSRGFGFVNYGNHEEAQKAVTEMNGKEVNGRMVYVG- 264
Query: 70 VRPSRRYNTDAPLARQLPQSPEE 92
R +R L R+ Q +E
Sbjct: 265 -RAQKRIERQGELKRKFEQIKQE 286
Score = 55.8 bits (133), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 43/72 (59%), Gaps = 3/72 (4%)
Query: 4 STTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGR 63
S + L D FS FG + ++ D+ S+GYG+V F T+E A +A+ MNG LL+ R
Sbjct: 109 SIDNKALYDTFSAFGDILSCKVVCDEYG--SRGYGFVHFETQEAANRAIQTMNGMLLNDR 166
Query: 64 VIFVDNVRPSRR 75
+FV + + SRR
Sbjct: 167 KVFVGHFK-SRR 177
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 38/58 (65%), Gaps = 2/58 (3%)
Query: 10 LADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 67
L FS +G +T ++ + G SKG+G+V FS+ EEA KA+ +MNG+++ + ++V
Sbjct: 310 LRKEFSPYGTITSTKVMTEGG--HSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYV 365
>sp|Q9ZUU4|ROC1_ARATH Ribonucleoprotein At2g37220, chloroplastic OS=Arabidopsis thaliana
GN=At2g37220 PE=1 SV=1
Length = 289
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 45/77 (58%), Gaps = 2/77 (2%)
Query: 1 VSFSTTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLL 60
+S+ L FS+ G+V EA +I D+ RSKG+G+VT+ + +E Q A+ ++G L
Sbjct: 211 LSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKSLDGADL 270
Query: 61 DGRVIFVD--NVRPSRR 75
DGR I V RP RR
Sbjct: 271 DGRQIRVSEAEARPPRR 287
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 36/72 (50%)
Query: 1 VSFSTTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLL 60
+ F+ LA F G V +I DK RS+G+G+VT S+ E + A NG L
Sbjct: 98 LPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQFNGYEL 157
Query: 61 DGRVIFVDNVRP 72
DGR + V+ P
Sbjct: 158 DGRPLRVNAGPP 169
>sp|P29341|PABP1_MOUSE Polyadenylate-binding protein 1 OS=Mus musculus GN=Pabpc1 PE=1 SV=2
Length = 636
Score = 59.3 bits (142), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 42/60 (70%), Gaps = 2/60 (3%)
Query: 8 EMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 67
E L FS FG +T A ++M+ G RSKG+G+V FS+ EEA KA+ +MNG+++ + ++V
Sbjct: 308 ERLRKEFSPFGTITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
Score = 59.3 bits (142), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 40/64 (62%), Gaps = 2/64 (3%)
Query: 4 STTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGR 63
S + L D FS FG + ++ D+ N SKGYG+V F T+E A++A+ MNG LL+ R
Sbjct: 109 SIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDR 166
Query: 64 VIFV 67
+FV
Sbjct: 167 KVFV 170
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 40/60 (66%), Gaps = 1/60 (1%)
Query: 8 EMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 67
E L + F +FG ++ D+ +SKG+G+V+F E+AQKA+ +MNGK L+G+ I+V
Sbjct: 205 ERLKELFGKFGPALSVKVMTDES-GKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 32/63 (50%)
Query: 5 TTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRV 64
T+ ML + FS G + + D RS GY YV F +A++AL MN ++ G+
Sbjct: 22 VTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKP 81
Query: 65 IFV 67
+ +
Sbjct: 82 VRI 84
>sp|P11940|PABP1_HUMAN Polyadenylate-binding protein 1 OS=Homo sapiens GN=PABPC1 PE=1 SV=2
Length = 636
Score = 59.3 bits (142), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 42/60 (70%), Gaps = 2/60 (3%)
Query: 8 EMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 67
E L FS FG +T A ++M+ G RSKG+G+V FS+ EEA KA+ +MNG+++ + ++V
Sbjct: 308 ERLRKEFSPFGTITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
Score = 59.3 bits (142), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 40/64 (62%), Gaps = 2/64 (3%)
Query: 4 STTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGR 63
S + L D FS FG + ++ D+ N SKGYG+V F T+E A++A+ MNG LL+ R
Sbjct: 109 SIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDR 166
Query: 64 VIFV 67
+FV
Sbjct: 167 KVFV 170
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 40/60 (66%), Gaps = 1/60 (1%)
Query: 8 EMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 67
E L D F +FG ++ D+ +SKG+G+V+F E+AQKA+ +MNGK L+G+ I+V
Sbjct: 205 ERLKDLFGKFGPALSVKVMTDES-GKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 32/63 (50%)
Query: 5 TTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRV 64
T+ ML + FS G + + D RS GY YV F +A++AL MN ++ G+
Sbjct: 22 VTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKP 81
Query: 65 IFV 67
+ +
Sbjct: 82 VRI 84
>sp|P61286|PABP1_BOVIN Polyadenylate-binding protein 1 OS=Bos taurus GN=PABPC1 PE=2 SV=1
Length = 636
Score = 59.3 bits (142), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 42/60 (70%), Gaps = 2/60 (3%)
Query: 8 EMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 67
E L FS FG +T A ++M+ G RSKG+G+V FS+ EEA KA+ +MNG+++ + ++V
Sbjct: 308 ERLRKEFSPFGTITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
Score = 59.3 bits (142), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 40/64 (62%), Gaps = 2/64 (3%)
Query: 4 STTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGR 63
S + L D FS FG + ++ D+ N SKGYG+V F T+E A++A+ MNG LL+ R
Sbjct: 109 SIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDR 166
Query: 64 VIFV 67
+FV
Sbjct: 167 KVFV 170
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 40/60 (66%), Gaps = 1/60 (1%)
Query: 8 EMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 67
E L D F +FG ++ D+ +SKG+G+V+F E+AQKA+ +MNGK L+G+ I+V
Sbjct: 205 ERLKDLFGKFGPALSVKVMTDES-GKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 32/63 (50%)
Query: 5 TTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRV 64
T+ ML + FS G + + D RS GY YV F +A++AL MN ++ G+
Sbjct: 22 VTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKP 81
Query: 65 IFV 67
+ +
Sbjct: 82 VRI 84
>sp|Q9FZ84|RBG6_ARATH Glycine-rich RNA-binding protein 6, mitochondrial OS=Arabidopsis
thaliana GN=RBG6 PE=2 SV=1
Length = 155
Score = 59.3 bits (142), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 44/67 (65%)
Query: 1 VSFSTTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLL 60
+S ST E+L +AF FG++ +A +++D+ S+G+G+VT+ + E A A+ M K L
Sbjct: 43 LSPSTDVELLKEAFGSFGKIVDAVVVLDRESGLSRGFGFVTYDSIEVANNAMQAMQNKEL 102
Query: 61 DGRVIFV 67
DGR+I V
Sbjct: 103 DGRIIGV 109
>sp|Q5R8F7|PABP1_PONAB Polyadenylate-binding protein 1 OS=Pongo abelii GN=PABPC1 PE=2 SV=1
Length = 636
Score = 59.3 bits (142), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 42/60 (70%), Gaps = 2/60 (3%)
Query: 8 EMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 67
E L FS FG +T A ++M+ G RSKG+G+V FS+ EEA KA+ +MNG+++ + ++V
Sbjct: 308 ERLRKEFSPFGTITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
Score = 59.3 bits (142), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 40/64 (62%), Gaps = 2/64 (3%)
Query: 4 STTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGR 63
S + L D FS FG + ++ D+ N SKGYG+V F T+E A++A+ MNG LL+ R
Sbjct: 109 SIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDR 166
Query: 64 VIFV 67
+FV
Sbjct: 167 KVFV 170
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 40/60 (66%), Gaps = 1/60 (1%)
Query: 8 EMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 67
E L D F +FG ++ D+ +SKG+G+V+F E+AQKA+ +MNGK L+G+ I+V
Sbjct: 205 ERLKDLFGKFGPALSVKVMTDES-GKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 32/62 (51%)
Query: 6 TKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVI 65
T+ ML + FS G + + D RS GY YV F +A++AL MN ++ G+ +
Sbjct: 23 TEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPV 82
Query: 66 FV 67
+
Sbjct: 83 RI 84
>sp|Q9EPH8|PABP1_RAT Polyadenylate-binding protein 1 OS=Rattus norvegicus GN=Pabpc1 PE=2
SV=1
Length = 636
Score = 59.3 bits (142), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 42/60 (70%), Gaps = 2/60 (3%)
Query: 8 EMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 67
E L FS FG +T A ++M+ G RSKG+G+V FS+ EEA KA+ +MNG+++ + ++V
Sbjct: 308 ERLRKEFSPFGTITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
Score = 59.3 bits (142), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 40/64 (62%), Gaps = 2/64 (3%)
Query: 4 STTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGR 63
S + L D FS FG + ++ D+ N SKGYG+V F T+E A++A+ MNG LL+ R
Sbjct: 109 SIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDR 166
Query: 64 VIFV 67
+FV
Sbjct: 167 KVFV 170
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 40/60 (66%), Gaps = 1/60 (1%)
Query: 8 EMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 67
E L + F +FG ++ D+ +SKG+G+V+F E+AQKA+ +MNGK L+G+ I+V
Sbjct: 205 ERLKELFGKFGPALSVKVMTDES-GKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 32/63 (50%)
Query: 5 TTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRV 64
T+ ML + FS G + + D RS GY YV F +A++AL MN ++ G+
Sbjct: 22 VTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKP 81
Query: 65 IFV 67
+ +
Sbjct: 82 VRI 84
>sp|Q86U06|RBM23_HUMAN Probable RNA-binding protein 23 OS=Homo sapiens GN=RBM23 PE=1 SV=1
Length = 439
Score = 59.3 bits (142), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 43/70 (61%)
Query: 1 VSFSTTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLL 60
+ F+ T++ML F FG++ ++ D RSKGYG++TFS E A++AL +NG L
Sbjct: 270 LHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFEL 329
Query: 61 DGRVIFVDNV 70
GR + V +V
Sbjct: 330 AGRPMRVGHV 339
Score = 36.6 bits (83), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Query: 10 LADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 67
L D FS G+V + II D+ RSKG YV F + A+ + G+ L G I V
Sbjct: 182 LEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAIG-LTGQRLLGVPIIV 238
>sp|Q13310|PABP4_HUMAN Polyadenylate-binding protein 4 OS=Homo sapiens GN=PABPC4 PE=1 SV=1
Length = 644
Score = 59.3 bits (142), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 50/85 (58%), Gaps = 3/85 (3%)
Query: 8 EMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 67
E L + FSQFG+ ++ D +SKG+G+V++ E+A KA+ +MNGK + G++IFV
Sbjct: 205 ESLKELFSQFGKTLSVKVMRDP-NGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFV 263
Query: 68 DNVRPSRRYNTDAPLARQLPQSPEE 92
R ++ A L R+ Q +E
Sbjct: 264 G--RAQKKVERQAELKRKFEQLKQE 286
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 42/60 (70%), Gaps = 2/60 (3%)
Query: 8 EMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 67
E L FS FG +T A ++++ G RSKG+G+V FS+ EEA KA+ +MNG+++ + ++V
Sbjct: 308 EKLRKEFSPFGSITSAKVMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYV 365
Score = 57.0 bits (136), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 38/64 (59%), Gaps = 2/64 (3%)
Query: 4 STTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGR 63
S + L D FS FG + ++ D+ N SKGY +V F T+E A KA+ MNG LL+ R
Sbjct: 109 SIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKMNGMLLNDR 166
Query: 64 VIFV 67
+FV
Sbjct: 167 KVFV 170
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 32/63 (50%)
Query: 5 TTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRV 64
T+ ML + FS G V + D RS GY YV F +A++AL MN ++ G+
Sbjct: 22 VTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKP 81
Query: 65 IFV 67
I +
Sbjct: 82 IRI 84
>sp|Q03250|RBG7_ARATH Glycine-rich RNA-binding protein 7 OS=Arabidopsis thaliana
GN=RBG7 PE=1 SV=1
Length = 176
Score = 59.3 bits (142), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 45/68 (66%)
Query: 1 VSFSTTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLL 60
++++T L AF+Q+G V ++ II D+ RS+G+G+VTF E+ + A+ MNG+ L
Sbjct: 15 LAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEGMNGQDL 74
Query: 61 DGRVIFVD 68
DGR I V+
Sbjct: 75 DGRSITVN 82
>sp|P20965|PABPA_XENLA Polyadenylate-binding protein 1-A OS=Xenopus laevis GN=pabpc1-a
PE=1 SV=3
Length = 633
Score = 58.9 bits (141), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 40/64 (62%), Gaps = 2/64 (3%)
Query: 4 STTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGR 63
S + L D FS FG + ++ D+ N SKGYG+V F T+E A++A+ MNG LL+ R
Sbjct: 109 SIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIDKMNGMLLNDR 166
Query: 64 VIFV 67
+FV
Sbjct: 167 KVFV 170
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 41/60 (68%), Gaps = 2/60 (3%)
Query: 8 EMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 67
E L F FG +T A ++M+ G RSKG+G+V FS+ EEA KA+ +MNG+++ + ++V
Sbjct: 308 ERLRKEFLPFGTITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 39/60 (65%), Gaps = 1/60 (1%)
Query: 8 EMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 67
E L + F ++G ++ D +SKG+G+V+F E+AQKA+ +MNGK ++G+ +FV
Sbjct: 205 ERLKEMFGKYGPALSVKVMTDDN-GKSKGFGFVSFERHEDAQKAVDEMNGKDMNGKSMFV 263
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 32/63 (50%)
Query: 5 TTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRV 64
T+ ML + FS G + + D RS GY YV F +A++AL MN ++ GR
Sbjct: 22 VTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGRP 81
Query: 65 IFV 67
+ +
Sbjct: 82 VRI 84
>sp|P39697|RT19_ARATH 40S ribosomal protein S19, mitochondrial OS=Arabidopsis thaliana
GN=RPS19 PE=1 SV=2
Length = 212
Score = 58.9 bits (141), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 46/86 (53%), Gaps = 13/86 (15%)
Query: 5 TTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRV 64
T + L DAFS F VTEA ++ +K RS+GYG+V F +E+ A A++ MNG+ L+G
Sbjct: 42 TDEHSLKDAFSSFNGVTEARVMTNKVTGRSRGYGFVNFISEDSANSAISAMNGQELNG-- 99
Query: 65 IFVDNVRPSRRYNTDAPLARQLPQSP 90
+N +A+ P P
Sbjct: 100 -----------FNISVNVAKDWPSLP 114
>sp|Q6IP09|PABPB_XENLA Polyadenylate-binding protein 1-B OS=Xenopus laevis GN=pabpc1-b
PE=2 SV=1
Length = 633
Score = 58.9 bits (141), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 40/64 (62%), Gaps = 2/64 (3%)
Query: 4 STTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGR 63
S + L D FS FG + ++ D+ N SKGYG+V F T+E A++A+ MNG LL+ R
Sbjct: 109 SIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIDKMNGMLLNDR 166
Query: 64 VIFV 67
+FV
Sbjct: 167 KVFV 170
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 42/60 (70%), Gaps = 2/60 (3%)
Query: 8 EMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 67
E L F+ FG +T A ++M+ G RSKG+G+V FS+ EEA KA+ +MNG+++ + ++V
Sbjct: 308 ERLRKEFTPFGSITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 39/60 (65%), Gaps = 1/60 (1%)
Query: 8 EMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 67
E L + F Q+G ++ D +S+G+G+V+F E+AQKA+ DMNGK L+G+ IFV
Sbjct: 205 ERLKEWFGQYGAALSVKVMTDD-HGKSRGFGFVSFERHEDAQKAVDDMNGKDLNGKAIFV 263
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 32/63 (50%)
Query: 5 TTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRV 64
T+ ML + FS G + + D RS GY YV F +A++AL MN ++ G+
Sbjct: 22 VTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKP 81
Query: 65 IFV 67
+ +
Sbjct: 82 VRI 84
>sp|Q54BM2|PAP1A_DICDI Polyadenylate-binding protein 1-A OS=Dictyostelium discoideum
GN=pabpc1A PE=1 SV=1
Length = 565
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 42/65 (64%), Gaps = 1/65 (1%)
Query: 10 LADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDN 69
L D FS FG + ++ D G N SKG+G+V + T+E A KA+A +NG +++G+ +FV
Sbjct: 114 LYDTFSAFGNILSCKVVTDDG-NSSKGFGFVHYETQESADKAIAKVNGMMINGQKVFVGP 172
Query: 70 VRPSR 74
+ S+
Sbjct: 173 FKSSK 177
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 41/64 (64%)
Query: 4 STTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGR 63
S + L + FSQFG +T A ++ D SKG+G+V ++ +EA +A+ +MNG+++ +
Sbjct: 294 SIDNDKLREVFSQFGTITSAIVMKDDKATTSKGFGFVCYTAPDEATRAVTEMNGRMIGTK 353
Query: 64 VIFV 67
++V
Sbjct: 354 PLYV 357
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
Query: 8 EMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIF 66
+ L + Q+G++T TI+ D K +SKG+G+ F + E A+ + + NGK+ G+ I+
Sbjct: 202 DQLKELLQQYGEITNITIMADD-KGKSKGFGFANFESAEAAKNVVENENGKIFHGKPIY 259
Score = 33.9 bits (76), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 16/63 (25%), Positives = 31/63 (49%)
Query: 5 TTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRV 64
+++ L + F+Q G V+ + D RS Y YV + +A++AL +N + G+
Sbjct: 21 VSEQHLFEIFNQVGLVSNIRVCRDTNTRRSLSYAYVNYYNGADAERALDTLNNTPIRGKA 80
Query: 65 IFV 67
+
Sbjct: 81 CRI 83
>sp|Q54PB2|MRD1_DICDI Multiple RNA-binding domain-containing protein 1 OS=Dictyostelium
discoideum GN=mrd1 PE=3 SV=1
Length = 895
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 43/67 (64%)
Query: 1 VSFSTTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLL 60
+S+ST +E L FS+FG+++E I +D +SKG ++ + E A +AL DM+GK+
Sbjct: 368 LSYSTKEEDLEKVFSKFGKISEIHIPIDYDSKKSKGIAFILYLIPENAVQALNDMDGKVF 427
Query: 61 DGRVIFV 67
GR+I V
Sbjct: 428 QGRLIHV 434
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 44/79 (55%), Gaps = 3/79 (3%)
Query: 6 TKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVI 65
T + + F +FG VT+A II GK+R +G++ FSTE+ A+ AL+ +NG +D I
Sbjct: 16 TDKRFKEHFEKFGTVTDAKIIKKDGKSRL--FGFIGFSTEQSAKNALS-LNGTFIDTSKI 72
Query: 66 FVDNVRPSRRYNTDAPLAR 84
V+ + + P ++
Sbjct: 73 VVETATVASETTENRPWSK 91
Score = 33.5 bits (75), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Query: 1 VSFSTTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLL 60
+ F +T + + F+ +G++ ++ I K +G+G+V F TEEEA+ A+ +
Sbjct: 802 LPFESTIKEIRKLFTAYGEI-QSVRIPKKPNGGHRGFGFVEFLTEEEAKNAMEALGNSHF 860
Query: 61 DGRVIFV 67
GR + +
Sbjct: 861 YGRHLVL 867
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 33/70 (47%), Gaps = 5/70 (7%)
Query: 1 VSFSTTKEMLADAFSQFGQVTEATIIMDKG-KNRSK----GYGYVTFSTEEEAQKALADM 55
+++ TT E L F I KN S+ G+G++ FS+++ A + + +
Sbjct: 685 LNWKTTNETLVGKFKSLKDYVNVNIATKANPKNPSERLPCGFGFIEFSSKQGAYECIKKL 744
Query: 56 NGKLLDGRVI 65
NG +DG I
Sbjct: 745 NGSSIDGYEI 754
>sp|Q96E39|RMXL1_HUMAN RNA binding motif protein, X-linked-like-1 OS=Homo sapiens
GN=RBMXL1 PE=1 SV=1
Length = 390
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 42/66 (63%)
Query: 5 TTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRV 64
T ++ L F ++G++ E +I D+ N+S+G+ +VTF + +A+ A DMNGK LDG+
Sbjct: 19 TNEKALETVFGKYGRIVEVLLIKDRETNKSRGFAFVTFESPADAKDAARDMNGKSLDGKA 78
Query: 65 IFVDNV 70
I V+
Sbjct: 79 IKVEQA 84
>sp|P19683|ROC4_NICSY 31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris
PE=1 SV=1
Length = 315
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 43/69 (62%)
Query: 10 LADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDN 69
L FS+ G+V A ++ D+ RS+G+G+VT ++E E A+A+++G+ LDGR I V+
Sbjct: 246 LEQLFSEHGKVVSARVVYDRETGRSRGFGFVTMASEAEMSDAIANLDGQSLDGRTIRVNV 305
Query: 70 VRPSRRYNT 78
R NT
Sbjct: 306 AEDRSRRNT 314
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 45/79 (56%), Gaps = 5/79 (6%)
Query: 1 VSFSTTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLL 60
+ + E LA F Q G V A +I ++ ++S+G+G+VT ST EEA+KA+ N +
Sbjct: 143 LPYDVDSEGLARLFEQAGVVEIAEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEMYNRYDV 202
Query: 61 DGRVIFVDNV-----RPSR 74
+GR++ V+ RP R
Sbjct: 203 NGRLLTVNKAARRGERPER 221
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.313 0.129 0.352
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 33,949,486
Number of Sequences: 539616
Number of extensions: 1229185
Number of successful extensions: 3897
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 780
Number of HSP's successfully gapped in prelim test: 115
Number of HSP's that attempted gapping in prelim test: 2445
Number of HSP's gapped (non-prelim): 1468
length of query: 93
length of database: 191,569,459
effective HSP length: 63
effective length of query: 30
effective length of database: 157,573,651
effective search space: 4727209530
effective search space used: 4727209530
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 55 (25.8 bits)