Query 048030
Match_columns 93
No_of_seqs 124 out of 1346
Neff 10.6
Searched_HMMs 46136
Date Fri Mar 29 05:36:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048030.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048030hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03134 glycine-rich RNA-bind 99.9 2.5E-20 5.5E-25 103.7 11.7 76 1-76 42-117 (144)
2 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.8 5.1E-19 1.1E-23 110.2 10.3 75 1-75 277-351 (352)
3 KOG0122 Translation initiation 99.8 2.6E-18 5.7E-23 100.6 8.6 73 1-73 197-269 (270)
4 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.8 4E-18 8.7E-23 106.2 9.8 75 1-75 11-85 (352)
5 TIGR01659 sex-lethal sex-letha 99.8 6.8E-18 1.5E-22 105.1 8.8 73 1-73 115-187 (346)
6 PF00076 RRM_1: RNA recognitio 99.7 5.3E-17 1.1E-21 80.0 8.5 65 1-66 6-70 (70)
7 TIGR01645 half-pint poly-U bin 99.7 8.1E-17 1.8E-21 105.6 10.9 77 1-77 212-288 (612)
8 KOG4207 Predicted splicing fac 99.7 9E-18 1.9E-22 96.5 5.4 72 1-72 21-92 (256)
9 TIGR01659 sex-lethal sex-letha 99.7 1.7E-16 3.7E-21 98.9 10.0 75 1-75 201-277 (346)
10 KOG0148 Apoptosis-promoting RN 99.7 6.5E-17 1.4E-21 96.1 7.3 78 1-78 70-147 (321)
11 KOG0113 U1 small nuclear ribon 99.7 2.3E-16 5E-21 94.7 9.1 74 1-74 109-182 (335)
12 KOG0145 RNA-binding protein EL 99.7 1.1E-16 2.4E-21 95.0 7.6 79 1-79 49-127 (360)
13 TIGR01645 half-pint poly-U bin 99.7 2.9E-16 6.2E-21 103.1 8.7 72 1-72 115-186 (612)
14 TIGR01628 PABP-1234 polyadenyl 99.7 7.1E-16 1.5E-20 101.3 9.9 74 1-74 8-81 (562)
15 PF14259 RRM_6: RNA recognitio 99.7 1.2E-15 2.6E-20 75.3 8.3 65 1-66 6-70 (70)
16 smart00360 RRM RNA recognition 99.7 1.8E-15 3.9E-20 73.9 8.5 68 1-68 4-71 (71)
17 PLN03120 nucleic acid binding 99.6 5.9E-15 1.3E-19 88.1 10.8 70 1-74 12-81 (260)
18 KOG0149 Predicted RNA-binding 99.6 7.9E-16 1.7E-20 89.8 6.2 70 1-71 20-89 (247)
19 TIGR01622 SF-CC1 splicing fact 99.6 6.7E-15 1.5E-19 94.6 11.0 71 1-71 194-264 (457)
20 TIGR01628 PABP-1234 polyadenyl 99.6 3.1E-15 6.7E-20 98.3 9.5 72 1-73 293-364 (562)
21 TIGR01642 U2AF_lg U2 snRNP aux 99.6 6.3E-15 1.4E-19 95.7 10.3 73 1-73 303-375 (509)
22 PF13893 RRM_5: RNA recognitio 99.6 8.2E-15 1.8E-19 69.5 8.0 56 10-70 1-56 (56)
23 KOG0144 RNA-binding protein CU 99.6 1.9E-15 4E-20 94.7 6.9 77 1-77 42-121 (510)
24 smart00361 RRM_1 RNA recogniti 99.6 8.1E-15 1.8E-19 72.5 7.9 61 7-67 2-69 (70)
25 KOG0111 Cyclophilin-type pepti 99.6 6.9E-16 1.5E-20 89.7 4.4 79 1-79 18-96 (298)
26 KOG0144 RNA-binding protein CU 99.6 2.6E-15 5.5E-20 94.1 6.6 77 1-78 132-211 (510)
27 KOG0125 Ataxin 2-binding prote 99.6 5.2E-15 1.1E-19 90.0 7.5 74 1-76 104-177 (376)
28 KOG0130 RNA-binding protein RB 99.6 5.8E-15 1.2E-19 80.1 6.5 74 2-75 81-154 (170)
29 KOG0126 Predicted RNA-binding 99.6 8E-17 1.7E-21 91.0 -0.7 74 1-74 43-116 (219)
30 smart00362 RRM_2 RNA recogniti 99.6 3E-14 6.4E-19 69.7 8.5 66 1-68 7-72 (72)
31 KOG0108 mRNA cleavage and poly 99.6 5.7E-15 1.2E-19 93.9 7.2 78 1-78 26-103 (435)
32 TIGR01622 SF-CC1 splicing fact 99.6 1.7E-14 3.8E-19 92.7 9.3 72 1-73 97-168 (457)
33 KOG0117 Heterogeneous nuclear 99.6 1E-14 2.2E-19 91.7 7.9 72 1-72 91-163 (506)
34 KOG0107 Alternative splicing f 99.6 1.4E-14 3.1E-19 81.5 7.4 73 1-78 18-90 (195)
35 PLN03213 repressor of silencin 99.6 1.3E-14 2.8E-19 92.7 8.0 69 1-73 18-88 (759)
36 TIGR01648 hnRNP-R-Q heterogene 99.6 1.7E-14 3.8E-19 94.6 8.1 70 1-71 66-136 (578)
37 PLN03121 nucleic acid binding 99.5 8E-14 1.7E-18 82.3 8.6 67 1-71 13-79 (243)
38 KOG0121 Nuclear cap-binding pr 99.5 4.6E-14 1E-18 75.9 6.6 71 1-71 44-114 (153)
39 COG0724 RNA-binding proteins ( 99.5 1.4E-13 3.1E-18 82.2 8.8 71 1-71 123-193 (306)
40 cd00590 RRM RRM (RNA recogniti 99.5 5.6E-13 1.2E-17 65.4 9.1 68 1-69 7-74 (74)
41 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.5 2.6E-13 5.6E-18 88.0 9.4 68 1-73 283-351 (481)
42 KOG0146 RNA-binding protein ET 99.5 2.9E-14 6.4E-19 85.1 4.4 75 1-75 293-367 (371)
43 TIGR01648 hnRNP-R-Q heterogene 99.5 3.2E-13 7E-18 88.7 9.2 67 1-75 241-309 (578)
44 KOG0145 RNA-binding protein EL 99.5 3.9E-13 8.5E-18 80.1 8.7 73 1-73 286-358 (360)
45 KOG0124 Polypyrimidine tract-b 99.5 7.2E-14 1.6E-18 86.6 4.9 67 2-68 122-188 (544)
46 KOG0148 Apoptosis-promoting RN 99.5 5.8E-13 1.3E-17 79.5 8.4 68 2-75 173-240 (321)
47 KOG0127 Nucleolar protein fibr 99.5 2.7E-13 5.8E-18 87.3 7.4 77 1-78 125-201 (678)
48 KOG0131 Splicing factor 3b, su 99.4 2.1E-13 4.5E-18 77.3 4.7 71 1-71 17-87 (203)
49 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.4 1.7E-12 3.7E-17 84.3 9.6 68 1-74 10-79 (481)
50 KOG0415 Predicted peptidyl pro 99.4 4.7E-13 1E-17 82.6 5.3 75 1-75 247-321 (479)
51 KOG0114 Predicted RNA-binding 99.4 4.4E-12 9.5E-17 66.1 7.7 70 1-73 26-95 (124)
52 KOG0117 Heterogeneous nuclear 99.4 2.1E-12 4.5E-17 81.5 6.9 68 1-76 267-334 (506)
53 KOG0131 Splicing factor 3b, su 99.4 2.2E-12 4.8E-17 73.1 6.0 77 1-77 104-181 (203)
54 KOG0109 RNA-binding protein LA 99.4 5.4E-12 1.2E-16 76.1 7.4 70 1-78 10-79 (346)
55 KOG0146 RNA-binding protein ET 99.3 4.4E-12 9.6E-17 76.0 6.6 75 2-77 28-105 (371)
56 KOG0124 Polypyrimidine tract-b 99.3 4E-12 8.6E-17 79.0 6.3 75 1-75 218-292 (544)
57 KOG0105 Alternative splicing f 99.3 3.4E-12 7.4E-17 72.8 5.3 70 1-73 14-83 (241)
58 KOG0147 Transcriptional coacti 99.3 4.6E-12 9.9E-17 81.5 6.4 71 1-71 286-356 (549)
59 KOG4208 Nucleolar RNA-binding 99.3 9.6E-12 2.1E-16 71.7 6.6 73 1-73 57-130 (214)
60 KOG0127 Nucleolar protein fibr 99.3 1.1E-11 2.3E-16 80.1 6.2 76 1-76 13-88 (678)
61 TIGR01642 U2AF_lg U2 snRNP aux 99.3 4.1E-11 8.8E-16 78.1 8.6 65 8-72 434-501 (509)
62 KOG0123 Polyadenylate-binding 99.3 3.2E-11 7E-16 76.0 7.9 74 1-77 84-157 (369)
63 KOG4212 RNA-binding protein hn 99.3 3.1E-11 6.6E-16 76.5 7.0 71 1-72 52-123 (608)
64 KOG0123 Polyadenylate-binding 99.3 4.5E-11 9.8E-16 75.4 7.7 70 3-75 8-77 (369)
65 KOG4206 Spliceosomal protein s 99.2 7.7E-11 1.7E-15 68.8 6.6 64 9-75 29-92 (221)
66 KOG0110 RNA-binding protein (R 99.2 1.4E-11 3.1E-16 81.2 3.7 74 1-74 621-694 (725)
67 KOG0533 RRM motif-containing p 99.1 1.5E-09 3.4E-14 64.8 8.9 75 1-76 91-165 (243)
68 KOG0153 Predicted RNA-binding 99.1 1E-09 2.2E-14 67.7 8.2 65 3-73 238-303 (377)
69 KOG0109 RNA-binding protein LA 99.1 3E-10 6.4E-15 68.8 5.6 69 2-78 87-155 (346)
70 KOG0110 RNA-binding protein (R 99.1 1.3E-09 2.7E-14 72.3 8.5 72 1-72 523-597 (725)
71 KOG0132 RNA polymerase II C-te 99.0 1.4E-09 3E-14 72.9 7.1 71 1-77 429-499 (894)
72 KOG0116 RasGAP SH3 binding pro 99.0 3.1E-09 6.7E-14 67.9 8.1 74 1-75 296-369 (419)
73 KOG1457 RNA binding protein (c 99.0 1.2E-08 2.5E-13 60.1 9.6 79 1-79 42-124 (284)
74 KOG4205 RNA-binding protein mu 99.0 5.8E-10 1.2E-14 68.8 3.8 76 1-77 14-89 (311)
75 KOG4661 Hsp27-ERE-TATA-binding 99.0 3E-09 6.5E-14 69.7 7.0 74 2-75 414-487 (940)
76 KOG0151 Predicted splicing reg 98.9 1.7E-08 3.7E-13 67.4 7.7 75 1-75 182-259 (877)
77 KOG0226 RNA-binding proteins [ 98.9 2.9E-09 6.3E-14 63.5 3.7 69 3-71 200-268 (290)
78 KOG4205 RNA-binding protein mu 98.9 3.9E-09 8.4E-14 65.2 4.3 76 1-77 105-180 (311)
79 KOG4660 Protein Mei2, essentia 98.8 3.7E-09 8.1E-14 68.5 3.0 61 1-66 83-143 (549)
80 KOG0106 Alternative splicing f 98.8 1.6E-08 3.5E-13 59.4 4.6 65 1-73 9-73 (216)
81 KOG4209 Splicing factor RNPS1, 98.8 2.8E-08 6E-13 59.3 5.5 71 2-73 110-180 (231)
82 KOG4212 RNA-binding protein hn 98.8 2.8E-08 6.1E-13 63.4 5.6 65 1-70 544-608 (608)
83 KOG4211 Splicing factor hnRNP- 98.7 5.3E-08 1.1E-12 62.6 6.5 69 1-73 18-86 (510)
84 KOG1548 Transcription elongati 98.7 9.7E-08 2.1E-12 59.2 6.7 70 1-71 142-219 (382)
85 KOG1190 Polypyrimidine tract-b 98.7 1.2E-07 2.7E-12 60.0 7.1 65 3-72 308-372 (492)
86 PF04059 RRM_2: RNA recognitio 98.6 1.2E-06 2.6E-11 45.7 8.2 71 1-71 9-85 (97)
87 KOG0147 Transcriptional coacti 98.6 1.3E-07 2.8E-12 61.5 4.8 72 4-76 190-261 (549)
88 KOG0120 Splicing factor U2AF, 98.6 1.1E-07 2.3E-12 62.0 4.2 73 1-73 297-369 (500)
89 KOG4211 Splicing factor hnRNP- 98.5 3E-07 6.6E-12 59.3 6.0 69 1-71 111-180 (510)
90 KOG4454 RNA binding protein (R 98.2 1.7E-06 3.6E-11 51.1 3.5 66 3-70 19-84 (267)
91 KOG4210 Nuclear localization s 98.2 1.3E-06 2.9E-11 53.7 3.0 77 1-78 193-269 (285)
92 KOG1995 Conserved Zn-finger pr 98.2 2.2E-06 4.7E-11 53.5 3.8 74 1-74 74-155 (351)
93 KOG0120 Splicing factor U2AF, 98.2 1.3E-05 2.8E-10 52.6 7.3 65 8-72 424-491 (500)
94 KOG2314 Translation initiation 98.2 9.7E-06 2.1E-10 53.6 6.2 62 9-71 80-142 (698)
95 KOG4307 RNA binding protein RB 98.1 1.4E-05 3.1E-10 54.0 7.0 68 1-68 875-942 (944)
96 PF11608 Limkain-b1: Limkain b 98.1 1.9E-05 4.2E-10 40.0 5.7 57 9-75 22-79 (90)
97 PF08952 DUF1866: Domain of un 98.1 4.9E-05 1.1E-09 42.4 7.4 56 8-72 51-106 (146)
98 PF08777 RRM_3: RNA binding mo 98.0 2.5E-05 5.4E-10 41.5 4.9 51 2-58 10-60 (105)
99 KOG1548 Transcription elongati 98.0 9.6E-05 2.1E-09 46.3 7.9 67 7-77 290-356 (382)
100 PF14605 Nup35_RRM_2: Nup53/35 97.9 6E-05 1.3E-09 35.1 4.5 39 8-52 15-53 (53)
101 KOG1457 RNA binding protein (c 97.9 5.5E-05 1.2E-09 45.0 5.0 57 1-61 218-274 (284)
102 KOG0106 Alternative splicing f 97.8 1.3E-05 2.7E-10 47.5 2.3 61 3-71 109-169 (216)
103 KOG4206 Spliceosomal protein s 97.8 0.00014 3.1E-09 43.0 6.4 66 1-71 154-220 (221)
104 COG5175 MOT2 Transcriptional r 97.8 0.00012 2.5E-09 46.1 5.5 62 11-72 138-202 (480)
105 PF05172 Nup35_RRM: Nup53/35/4 97.7 0.00049 1.1E-08 36.2 6.8 65 6-71 18-90 (100)
106 PF08675 RNA_bind: RNA binding 97.6 0.0004 8.7E-09 35.2 5.5 49 1-57 16-64 (87)
107 KOG1190 Polypyrimidine tract-b 97.6 0.00029 6.2E-09 45.3 5.7 68 1-73 422-491 (492)
108 KOG0112 Large RNA-binding prot 97.6 0.00022 4.7E-09 49.6 5.1 73 1-79 463-537 (975)
109 KOG1365 RNA-binding protein Fu 97.5 0.00014 3E-09 46.4 3.4 70 1-71 288-360 (508)
110 KOG2193 IGF-II mRNA-binding pr 97.5 8.3E-05 1.8E-09 47.9 2.4 80 1-86 9-89 (584)
111 KOG1456 Heterogeneous nuclear 97.5 0.0011 2.3E-08 42.4 7.0 64 5-73 300-363 (494)
112 KOG4849 mRNA cleavage factor I 97.4 0.00016 3.4E-09 45.7 3.2 65 1-65 88-154 (498)
113 KOG1456 Heterogeneous nuclear 97.3 0.0019 4E-08 41.4 6.5 65 4-73 133-199 (494)
114 KOG1996 mRNA splicing factor [ 97.2 0.0029 6.2E-08 39.3 6.8 64 7-70 300-364 (378)
115 KOG2202 U2 snRNP splicing fact 97.2 0.00027 5.9E-09 42.7 2.3 63 8-71 83-146 (260)
116 KOG1365 RNA-binding protein Fu 97.2 0.0023 5E-08 41.1 6.1 65 1-67 169-237 (508)
117 KOG0105 Alternative splicing f 97.1 0.0026 5.6E-08 37.1 5.4 53 1-60 123-175 (241)
118 PF04847 Calcipressin: Calcipr 97.1 0.0054 1.2E-07 35.8 6.7 63 6-74 8-72 (184)
119 PF10309 DUF2414: Protein of u 97.0 0.0083 1.8E-07 28.8 5.8 45 4-55 15-62 (62)
120 KOG2135 Proteins containing th 97.0 0.0016 3.5E-08 42.6 4.2 62 6-74 386-447 (526)
121 KOG3152 TBP-binding protein, a 96.9 0.00089 1.9E-08 40.6 2.7 64 1-64 82-157 (278)
122 PF15023 DUF4523: Protein of u 96.8 0.011 2.4E-07 33.2 5.8 55 8-70 105-159 (166)
123 KOG4676 Splicing factor, argin 96.6 0.0047 1E-07 39.8 4.2 69 1-70 15-86 (479)
124 KOG0128 RNA-binding protein SA 96.5 0.0003 6.5E-09 48.6 -1.8 67 1-67 675-741 (881)
125 PF07576 BRAP2: BRCA1-associat 96.4 0.05 1.1E-06 29.2 6.9 56 4-61 24-80 (110)
126 KOG0128 RNA-binding protein SA 96.3 0.0041 8.8E-08 43.4 3.0 69 1-70 744-812 (881)
127 PF03880 DbpA: DbpA RNA bindin 96.3 0.048 1E-06 27.0 6.4 58 4-70 12-74 (74)
128 KOG1855 Predicted RNA-binding 96.2 0.0038 8.2E-08 40.5 2.2 58 1-58 239-309 (484)
129 KOG2416 Acinus (induces apopto 96.1 0.008 1.7E-07 40.6 3.5 61 5-71 456-520 (718)
130 KOG0129 Predicted RNA-binding 95.8 0.031 6.7E-07 37.2 5.1 53 1-54 267-325 (520)
131 KOG4307 RNA binding protein RB 95.7 0.0059 1.3E-07 42.0 1.5 69 1-70 442-511 (944)
132 KOG4285 Mitotic phosphoprotein 95.5 0.059 1.3E-06 33.8 5.2 56 8-70 211-267 (350)
133 PF03467 Smg4_UPF3: Smg-4/UPF3 95.5 0.018 3.9E-07 33.4 2.8 72 1-72 15-97 (176)
134 KOG2068 MOT2 transcription fac 94.8 0.012 2.6E-07 37.0 0.8 61 12-72 99-162 (327)
135 KOG0804 Cytoplasmic Zn-finger 94.5 0.21 4.6E-06 33.0 5.8 59 1-61 82-141 (493)
136 KOG4660 Protein Mei2, essentia 94.2 0.2 4.3E-06 33.8 5.3 57 17-73 413-473 (549)
137 KOG4574 RNA-binding protein (c 94.0 0.11 2.4E-06 36.8 4.0 68 5-78 310-379 (1007)
138 PF11767 SET_assoc: Histone ly 93.9 0.36 7.9E-06 23.5 6.2 55 4-67 11-65 (66)
139 PF07530 PRE_C2HC: Associated 93.3 0.29 6.4E-06 23.9 3.8 63 8-73 2-65 (68)
140 KOG0129 Predicted RNA-binding 92.9 0.44 9.5E-06 32.0 5.3 54 1-54 378-432 (520)
141 KOG0112 Large RNA-binding prot 92.9 0.051 1.1E-06 38.6 1.1 69 1-70 380-448 (975)
142 smart00596 PRE_C2HC PRE_C2HC d 91.4 0.62 1.3E-05 22.9 3.6 62 8-72 2-64 (69)
143 KOG2591 c-Mpl binding protein, 90.3 0.69 1.5E-05 31.7 4.1 58 1-65 183-244 (684)
144 PF15513 DUF4651: Domain of un 89.6 1.3 2.8E-05 21.3 3.7 18 8-25 9-26 (62)
145 KOG0115 RNA-binding protein p5 89.4 0.7 1.5E-05 28.5 3.4 69 1-70 39-111 (275)
146 KOG4483 Uncharacterized conser 82.5 5.2 0.00011 26.6 4.9 46 2-54 400-446 (528)
147 KOG4210 Nuclear localization s 81.4 1.6 3.5E-05 27.4 2.3 59 6-64 101-159 (285)
148 PF02714 DUF221: Domain of unk 73.8 7 0.00015 24.7 3.6 34 38-73 1-34 (325)
149 PF11411 DNA_ligase_IV: DNA li 73.2 3.6 7.9E-05 17.5 1.6 15 4-18 20-34 (36)
150 PF03468 XS: XS domain; Inter 72.0 7.9 0.00017 21.0 3.1 46 5-53 29-75 (116)
151 KOG4454 RNA binding protein (R 70.9 1.6 3.4E-05 26.6 0.3 58 3-61 94-151 (267)
152 KOG2891 Surface glycoprotein [ 70.0 3.1 6.7E-05 26.3 1.4 22 5-26 173-194 (445)
153 KOG2253 U1 snRNP complex, subu 65.7 3.7 8E-05 28.8 1.2 56 5-69 52-107 (668)
154 PF03439 Spt5-NGN: Early trans 65.3 12 0.00027 18.9 2.9 28 32-59 41-68 (84)
155 KOG4019 Calcineurin-mediated s 65.3 18 0.0004 21.4 3.8 38 36-73 52-90 (193)
156 KOG2193 IGF-II mRNA-binding pr 65.1 0.45 9.8E-06 31.5 -2.9 66 1-70 88-154 (584)
157 KOG0226 RNA-binding proteins [ 54.6 6.9 0.00015 24.4 0.9 62 11-73 117-178 (290)
158 PF07292 NID: Nmi/IFP 35 domai 53.3 32 0.00068 17.8 3.9 31 38-69 1-33 (88)
159 PRK10905 cell division protein 52.1 64 0.0014 21.0 5.3 53 5-58 256-309 (328)
160 PF10281 Ish1: Putative stress 50.3 18 0.00039 15.2 1.7 17 4-20 3-19 (38)
161 KOG4410 5-formyltetrahydrofola 49.0 40 0.00087 21.7 3.6 39 1-45 338-377 (396)
162 PRK11901 hypothetical protein; 47.3 75 0.0016 20.8 4.6 51 6-58 255-307 (327)
163 PF11823 DUF3343: Protein of u 46.9 35 0.00077 16.5 3.2 24 37-60 3-26 (73)
164 PRK11634 ATP-dependent RNA hel 45.7 1.1E+02 0.0024 21.8 7.2 59 4-71 498-561 (629)
165 PF10567 Nab6_mRNP_bdg: RNA-re 45.0 83 0.0018 20.3 5.4 67 4-70 26-105 (309)
166 PRK09213 pur operon repressor; 43.6 84 0.0018 19.9 5.2 43 9-56 46-88 (271)
167 PHA03048 IMV membrane protein; 43.5 2.6 5.6E-05 21.8 -1.7 21 37-57 28-48 (93)
168 TIGR01743 purR_Bsub pur operon 42.9 85 0.0019 19.8 5.4 44 9-57 44-87 (268)
169 PF13037 DUF3898: Domain of un 42.3 30 0.00065 17.9 2.0 51 5-55 31-89 (91)
170 PF13689 DUF4154: Domain of un 41.2 64 0.0014 17.9 4.5 36 36-72 27-62 (145)
171 PHA02898 virion envelope prote 38.7 5.6 0.00012 20.5 -0.9 21 37-57 28-49 (92)
172 TIGR02542 B_forsyth_147 Bacter 38.1 29 0.00062 19.1 1.6 44 2-45 83-129 (145)
173 KOG3003 Molecular chaperone of 37.6 1E+02 0.0022 19.2 4.4 16 5-20 162-177 (236)
174 PF10905 DUF2695: Protein of u 36.1 52 0.0011 15.3 2.6 24 4-27 29-52 (53)
175 PHA01632 hypothetical protein 33.7 49 0.0011 15.6 1.8 16 1-16 24-39 (64)
176 PF13405 EF-hand_6: EF-hand do 32.3 40 0.00086 13.1 1.3 14 5-18 17-31 (31)
177 PF06014 DUF910: Bacterial pro 31.3 39 0.00084 16.3 1.3 16 7-22 4-19 (62)
178 PF05573 NosL: NosL; InterPro 30.5 1.1E+02 0.0023 17.3 3.3 22 34-55 113-134 (149)
179 KOG1295 Nonsense-mediated deca 30.2 64 0.0014 21.5 2.5 60 1-60 15-77 (376)
180 KOG2187 tRNA uracil-5-methyltr 29.5 62 0.0013 22.6 2.4 40 34-73 62-101 (534)
181 PF00585 Thr_dehydrat_C: C-ter 29.3 89 0.0019 16.0 4.9 50 9-58 23-74 (91)
182 smart00540 LEM in nuclear memb 29.1 56 0.0012 14.5 1.6 17 4-20 5-21 (44)
183 PF13046 DUF3906: Protein of u 29.0 80 0.0017 15.3 2.3 33 6-40 31-63 (64)
184 PF15063 TC1: Thyroid cancer p 28.9 58 0.0013 16.4 1.7 18 4-21 36-53 (79)
185 PF03672 UPF0154: Uncharacteri 26.2 82 0.0018 15.3 1.9 17 3-19 30-46 (64)
186 KOG0862 Synaptobrevin/VAMP-lik 26.1 59 0.0013 19.9 1.7 12 33-44 107-118 (216)
187 PF12829 Mhr1: Transcriptional 26.0 1.1E+02 0.0024 16.0 2.8 22 35-56 51-72 (91)
188 KOG3432 Vacuolar H+-ATPase V1 25.5 1E+02 0.0022 16.8 2.3 24 3-26 43-66 (121)
189 PHA01782 hypothetical protein 25.3 65 0.0014 18.8 1.7 21 1-21 63-83 (177)
190 PF08206 OB_RNB: Ribonuclease 24.9 63 0.0014 14.9 1.4 11 34-44 7-17 (58)
191 COG0225 MsrA Peptide methionin 24.4 1.6E+02 0.0036 17.4 4.1 26 46-71 111-136 (174)
192 TIGR00405 L26e_arch ribosomal 23.6 1.2E+02 0.0025 16.9 2.6 26 33-58 36-61 (145)
193 PHA02680 ORF090 IMV phosphoryl 23.4 8 0.00017 19.9 -1.9 20 37-56 28-49 (91)
194 PRK14548 50S ribosomal protein 22.4 1.3E+02 0.0028 15.4 5.0 49 2-53 29-79 (84)
195 PRK00523 hypothetical protein; 22.4 1E+02 0.0023 15.3 1.9 17 3-19 38-54 (72)
196 PF09341 Pcc1: Transcription f 22.2 1.1E+02 0.0025 14.8 3.2 20 37-56 4-23 (76)
197 PF08156 NOP5NT: NOP5NT (NUC12 22.1 76 0.0016 15.3 1.4 19 37-55 46-64 (67)
198 TIGR01639 P_fal_TIGR01639 Plas 21.9 60 0.0013 15.3 1.0 20 2-21 7-26 (61)
199 PRK04405 prsA peptidylprolyl i 21.6 2.3E+02 0.005 18.1 4.8 40 4-57 128-167 (298)
200 PRK08559 nusG transcription an 21.5 1.5E+02 0.0032 16.8 2.7 25 34-58 45-69 (153)
201 COG4009 Uncharacterized protei 20.5 81 0.0017 16.1 1.3 17 3-19 58-74 (88)
202 TIGR00006 S-adenosyl-methyltra 20.5 73 0.0016 20.5 1.5 19 4-22 140-158 (305)
No 1
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.86 E-value=2.5e-20 Score=103.66 Aligned_cols=76 Identities=38% Similarity=0.691 Sum_probs=71.9
Q ss_pred CCccccHHHHHHHHhccCCccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecCCCCCC
Q 048030 1 VSFSTTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRY 76 (93)
Q Consensus 1 l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~~~ 76 (93)
||+++++++|+++|++||.|.++.++.++.++++++||||+|.+.++|+.|+..|++..|.|++|+|.++..+...
T Consensus 42 L~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a~~~~~~ 117 (144)
T PLN03134 42 LSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPANDRPSA 117 (144)
T ss_pred CCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeCCcCCCC
Confidence 7899999999999999999999999999999999999999999999999999999999999999999999766543
No 2
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.81 E-value=5.1e-19 Score=110.21 Aligned_cols=75 Identities=33% Similarity=0.487 Sum_probs=71.6
Q ss_pred CCccccHHHHHHHHhccCCccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecCCCCC
Q 048030 1 VSFSTTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRR 75 (93)
Q Consensus 1 l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~~ 75 (93)
||+++++++|+++|+.||.|.+++++.++.++.++|||||.|.+.++|..|+..|||..++|+.|+|.+..++..
T Consensus 277 L~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~gr~i~V~~~~~~~~ 351 (352)
T TIGR01661 277 LSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMAILSLNGYTLGNRVLQVSFKTNKAY 351 (352)
T ss_pred CCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEccCCCC
Confidence 789999999999999999999999999999999999999999999999999999999999999999999887653
No 3
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.78 E-value=2.6e-18 Score=100.57 Aligned_cols=73 Identities=33% Similarity=0.561 Sum_probs=70.6
Q ss_pred CCccccHHHHHHHHhccCCccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecCCC
Q 048030 1 VSFSTTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPS 73 (93)
Q Consensus 1 l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~ 73 (93)
|+.++++.+|+++|..||.|..+.+.+++.+|..+|||||.|.+.++|.+||..|+|.-...--|+|+|++++
T Consensus 197 Lsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEwskP~ 269 (270)
T KOG0122|consen 197 LSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWSKPS 269 (270)
T ss_pred CccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEecCCC
Confidence 6889999999999999999999999999999999999999999999999999999999999999999999876
No 4
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.77 E-value=4e-18 Score=106.24 Aligned_cols=75 Identities=31% Similarity=0.560 Sum_probs=71.3
Q ss_pred CCccccHHHHHHHHhccCCccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecCCCCC
Q 048030 1 VSFSTTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRR 75 (93)
Q Consensus 1 l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~~ 75 (93)
||+++++++|+++|+.||.|.+++++.++.+|+++|||||+|.+.++|.+|+..|++..+.|+.|.|.++++...
T Consensus 11 Lp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~~~~~ 85 (352)
T TIGR01661 11 LPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYARPSSD 85 (352)
T ss_pred CCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeeccccc
Confidence 799999999999999999999999999998999999999999999999999999999999999999999876654
No 5
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.76 E-value=6.8e-18 Score=105.13 Aligned_cols=73 Identities=26% Similarity=0.469 Sum_probs=69.9
Q ss_pred CCccccHHHHHHHHhccCCccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecCCC
Q 048030 1 VSFSTTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPS 73 (93)
Q Consensus 1 l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~ 73 (93)
||+++++++|+++|+.||.|.+++|+.++.+++++|||||+|.+.++|..|+..|++..+.+++|+|.++++.
T Consensus 115 Lp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~~a~p~ 187 (346)
T TIGR01659 115 LPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVSYARPG 187 (346)
T ss_pred CCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeeeccccc
Confidence 7899999999999999999999999999989999999999999999999999999999999999999998754
No 6
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.74 E-value=5.3e-17 Score=79.95 Aligned_cols=65 Identities=42% Similarity=0.731 Sum_probs=61.3
Q ss_pred CCccccHHHHHHHHhccCCccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeCCeEEE
Q 048030 1 VSFSTTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIF 66 (93)
Q Consensus 1 l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~ 66 (93)
||.++++++|+++|+.||.+..+.+..+ .++..+++|||.|.+.++|..|+..|++..+.|+.|+
T Consensus 6 lp~~~t~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 6 LPPDVTEEELRDFFSQFGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp ETTTSSHHHHHHHHHTTSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCCcCCHHHHHHHHHHhhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 6899999999999999999999999887 5889999999999999999999999999999999875
No 7
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.73 E-value=8.1e-17 Score=105.64 Aligned_cols=77 Identities=19% Similarity=0.327 Sum_probs=71.9
Q ss_pred CCccccHHHHHHHHhccCCccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecCCCCCCC
Q 048030 1 VSFSTTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYN 77 (93)
Q Consensus 1 l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~~~~ 77 (93)
||+++++++|+++|+.||.|.++++.+++.+++++|||||+|.+.++|..|+..||+..++|+.|+|.++.+.+...
T Consensus 212 Lp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kAi~pP~~~ 288 (612)
T TIGR01645 212 VHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCVTPPDAL 288 (612)
T ss_pred CCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEecCCCcccc
Confidence 68899999999999999999999999999899999999999999999999999999999999999999988665443
No 8
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.73 E-value=9e-18 Score=96.53 Aligned_cols=72 Identities=31% Similarity=0.591 Sum_probs=68.2
Q ss_pred CCccccHHHHHHHHhccCCccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecCC
Q 048030 1 VSFSTTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRP 72 (93)
Q Consensus 1 l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~ 72 (93)
|.+-++.++|+.+|++||.|-+|.|++++.+...+|||||.|.+..+|+.|+.+|+|..++|+.|.|+.++-
T Consensus 21 LTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~ary 92 (256)
T KOG4207|consen 21 LTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMARY 92 (256)
T ss_pred eeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehhhhc
Confidence 456689999999999999999999999999999999999999999999999999999999999999998863
No 9
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.71 E-value=1.7e-16 Score=98.92 Aligned_cols=75 Identities=25% Similarity=0.476 Sum_probs=68.9
Q ss_pred CCccccHHHHHHHHhccCCccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeCC--eEEEEEecCCCCC
Q 048030 1 VSFSTTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDG--RVIFVDNVRPSRR 75 (93)
Q Consensus 1 l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g--~~l~v~~~~~~~~ 75 (93)
||.++++++|+++|++||.|..++++.++.+++.++||||+|.+.++|++|+..|++..+.+ ++|.|.+++....
T Consensus 201 Lp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l~V~~a~~~~~ 277 (346)
T TIGR01659 201 LPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIPEGGSQPLTVRLAEEHGK 277 (346)
T ss_pred CCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEECCcccc
Confidence 78999999999999999999999999999899999999999999999999999999998865 6899998875533
No 10
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.71 E-value=6.5e-17 Score=96.12 Aligned_cols=78 Identities=35% Similarity=0.581 Sum_probs=72.6
Q ss_pred CCccccHHHHHHHHhccCCccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecCCCCCCCC
Q 048030 1 VSFSTTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNT 78 (93)
Q Consensus 1 l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~~~~~ 78 (93)
|..+++-++|++.|.+||+|.+.++++|..+++++||+||.|.+.++|++||..|+|.=|++|.|+-.|+..++....
T Consensus 70 ls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWATRKp~e~n 147 (321)
T KOG0148|consen 70 LSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWATRKPSEMN 147 (321)
T ss_pred cchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeeccccccCccccC
Confidence 567889999999999999999999999999999999999999999999999999999999999999999988874433
No 11
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.70 E-value=2.3e-16 Score=94.73 Aligned_cols=74 Identities=28% Similarity=0.590 Sum_probs=70.0
Q ss_pred CCccccHHHHHHHHhccCCccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecCCCC
Q 048030 1 VSFSTTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSR 74 (93)
Q Consensus 1 l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~ 74 (93)
|+++++|..|+..|+.||.|..|.++.+..+|+++|||||+|.+..+...|.+..+|..|.|+.|.|.+.....
T Consensus 109 LnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDvERgRT 182 (335)
T KOG0113|consen 109 LNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDVERGRT 182 (335)
T ss_pred ccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEeccccc
Confidence 68899999999999999999999999999999999999999999999999999999999999999998876543
No 12
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.70 E-value=1.1e-16 Score=94.97 Aligned_cols=79 Identities=29% Similarity=0.513 Sum_probs=74.8
Q ss_pred CCccccHHHHHHHHhccCCccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecCCCCCCCCC
Q 048030 1 VSFSTTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTD 79 (93)
Q Consensus 1 l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~~~~~~ 79 (93)
||..+++++++.+|...|+|.+|++++|+-+|.+.||+||.|-++++|++|+..|||..+..+.|+|.++++....-.+
T Consensus 49 LPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSyARPSs~~Ik~ 127 (360)
T KOG0145|consen 49 LPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSYARPSSDSIKD 127 (360)
T ss_pred cccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEeccCChhhhcc
Confidence 7899999999999999999999999999999999999999999999999999999999999999999999988765543
No 13
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.68 E-value=2.9e-16 Score=103.12 Aligned_cols=72 Identities=32% Similarity=0.584 Sum_probs=68.2
Q ss_pred CCccccHHHHHHHHhccCCccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecCC
Q 048030 1 VSFSTTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRP 72 (93)
Q Consensus 1 l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~ 72 (93)
||+++++++|+++|..||.|.++.+++++.+++++|||||+|.+.++|..|+..|||..+.|+.|+|.+...
T Consensus 115 Lp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp~~ 186 (612)
T TIGR01645 115 ISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPSN 186 (612)
T ss_pred CCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeeccccc
Confidence 688999999999999999999999999999999999999999999999999999999999999999986543
No 14
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.67 E-value=7.1e-16 Score=101.27 Aligned_cols=74 Identities=34% Similarity=0.469 Sum_probs=69.9
Q ss_pred CCccccHHHHHHHHhccCCccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecCCCC
Q 048030 1 VSFSTTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSR 74 (93)
Q Consensus 1 l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~ 74 (93)
||+++++++|+++|+.||.|.+|++.++..+++++|||||.|.+.++|.+|+..|++..+.|+.|+|.|+....
T Consensus 8 Lp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~~~~ 81 (562)
T TIGR01628 8 LDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQRDP 81 (562)
T ss_pred CCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeecccccc
Confidence 78999999999999999999999999999899999999999999999999999999999999999999986443
No 15
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.67 E-value=1.2e-15 Score=75.33 Aligned_cols=65 Identities=43% Similarity=0.705 Sum_probs=59.1
Q ss_pred CCccccHHHHHHHHhccCCccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeCCeEEE
Q 048030 1 VSFSTTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIF 66 (93)
Q Consensus 1 l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~ 66 (93)
||+++++++|+.+|+.+|.+..+.+..++. +..+++|||+|.+.++|.+|+..+++..++|+.|+
T Consensus 6 lp~~~~~~~l~~~f~~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 6 LPPSTTEEDLRNFFSRFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp STTT--HHHHHHHCTTSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCCCCCHHHHHHHHHhcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 689999999999999999999999999876 89999999999999999999999998999999874
No 16
>smart00360 RRM RNA recognition motif.
Probab=99.66 E-value=1.8e-15 Score=73.90 Aligned_cols=68 Identities=41% Similarity=0.719 Sum_probs=63.0
Q ss_pred CCccccHHHHHHHHhccCCccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEE
Q 048030 1 VSFSTTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVD 68 (93)
Q Consensus 1 l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 68 (93)
||..+++++|+.+|..||.+..+.+..++.++..+++|||.|.+.++|..|+..+++..+.|+.+.|+
T Consensus 4 l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 4 LPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 67889999999999999999999998887778899999999999999999999999999999988773
No 17
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.65 E-value=5.9e-15 Score=88.10 Aligned_cols=70 Identities=20% Similarity=0.319 Sum_probs=63.7
Q ss_pred CCccccHHHHHHHHhccCCccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecCCCC
Q 048030 1 VSFSTTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSR 74 (93)
Q Consensus 1 l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~ 74 (93)
||+.+++++|+++|+.||.|.++.++.++. .+|||||+|.+.++|..|+. |+|..+.|+.|.|..+....
T Consensus 12 Ls~~tTE~dLrefFS~~G~I~~V~I~~d~~---~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a~~~~ 81 (260)
T PLN03120 12 VSLKATERDIKEFFSFSGDIEYVEMQSENE---RSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITPAEDYQ 81 (260)
T ss_pred CCCCCCHHHHHHHHHhcCCeEEEEEeecCC---CCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEeccCCC
Confidence 789999999999999999999999988753 46899999999999999996 99999999999999987543
No 18
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.64 E-value=7.9e-16 Score=89.83 Aligned_cols=70 Identities=41% Similarity=0.678 Sum_probs=64.3
Q ss_pred CCccccHHHHHHHHhccCCccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecC
Q 048030 1 VSFSTTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVR 71 (93)
Q Consensus 1 l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 71 (93)
|++++..++|++.|+.||+|.+..++.|+.+|+++||+||+|.+.+.|.+||+. ....|+||+..|..+.
T Consensus 20 L~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~d-p~piIdGR~aNcnlA~ 89 (247)
T KOG0149|consen 20 LAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKD-PNPIIDGRKANCNLAS 89 (247)
T ss_pred cccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcC-CCCcccccccccchhh
Confidence 789999999999999999999999999999999999999999999999999993 5667999988877664
No 19
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.64 E-value=6.7e-15 Score=94.60 Aligned_cols=71 Identities=37% Similarity=0.616 Sum_probs=68.3
Q ss_pred CCccccHHHHHHHHhccCCccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecC
Q 048030 1 VSFSTTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVR 71 (93)
Q Consensus 1 l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 71 (93)
||..+++++|+++|+.||.|..+.++.++.+|+.+|||||+|.+.++|..|+..|+|..+.|+.|.|.++.
T Consensus 194 l~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~ 264 (457)
T TIGR01622 194 LHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYAQ 264 (457)
T ss_pred CCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEcc
Confidence 68899999999999999999999999998889999999999999999999999999999999999999976
No 20
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.63 E-value=3.1e-15 Score=98.31 Aligned_cols=72 Identities=35% Similarity=0.690 Sum_probs=68.2
Q ss_pred CCccccHHHHHHHHhccCCccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecCCC
Q 048030 1 VSFSTTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPS 73 (93)
Q Consensus 1 l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~ 73 (93)
|+.++++++|+++|+.||.|.+++++.+ .++.++|||||.|.+.++|.+|+..||+..+.|++|.|.++..+
T Consensus 293 l~~~~~~~~L~~~F~~~G~i~~~~i~~d-~~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~gk~l~V~~a~~k 364 (562)
T TIGR01628 293 LDDTVTDEKLRELFSECGEITSAKVMLD-EKGVSRGFGFVCFSNPEEANRAVTEMHGRMLGGKPLYVALAQRK 364 (562)
T ss_pred CCCccCHHHHHHHHHhcCCeEEEEEEEC-CCCCcCCeEEEEeCCHHHHHHHHHHhcCCeeCCceeEEEeccCc
Confidence 6789999999999999999999999998 58999999999999999999999999999999999999998865
No 21
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.63 E-value=6.3e-15 Score=95.74 Aligned_cols=73 Identities=19% Similarity=0.365 Sum_probs=69.4
Q ss_pred CCccccHHHHHHHHhccCCccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecCCC
Q 048030 1 VSFSTTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPS 73 (93)
Q Consensus 1 l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~ 73 (93)
||+.+++++|+++|+.||.|..+.++.+..+|..+|||||+|.+.+.|..|+..|+|..+.|+.|.|.++...
T Consensus 303 lp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~~~ 375 (509)
T TIGR01642 303 LPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRACVG 375 (509)
T ss_pred CCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECccC
Confidence 6889999999999999999999999999889999999999999999999999999999999999999998644
No 22
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.62 E-value=8.2e-15 Score=69.52 Aligned_cols=56 Identities=38% Similarity=0.716 Sum_probs=50.0
Q ss_pred HHHHHhccCCccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEec
Q 048030 10 LADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNV 70 (93)
Q Consensus 10 l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 70 (93)
|+++|++||.|..+.+.... +++|||+|.+.++|..|+..||+..+.|++|+|.++
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 67899999999999886543 579999999999999999999999999999999985
No 23
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.62 E-value=1.9e-15 Score=94.70 Aligned_cols=77 Identities=23% Similarity=0.377 Sum_probs=70.3
Q ss_pred CCccccHHHHHHHHhccCCccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCee---CCeEEEEEecCCCCCCC
Q 048030 1 VSFSTTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLL---DGRVIFVDNVRPSRRYN 77 (93)
Q Consensus 1 l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~---~g~~l~v~~~~~~~~~~ 77 (93)
+|..++|+||+++|++||.+.+|.+++|+.++.++|||||.|.+.++|.+|+.+||+... +.++|.|++++..+.+.
T Consensus 42 Iprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvqvk~Ad~E~er~ 121 (510)
T KOG0144|consen 42 IPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQVKYADGERERI 121 (510)
T ss_pred CCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcceeecccchhhhcc
Confidence 578999999999999999999999999999999999999999999999999999999863 35789999998877663
No 24
>smart00361 RRM_1 RNA recognition motif.
Probab=99.62 E-value=8.1e-15 Score=72.52 Aligned_cols=61 Identities=36% Similarity=0.658 Sum_probs=55.0
Q ss_pred HHHHHHHHh----ccCCccEEE-EeecCCC--CCcccEEEEEecCHHHHHHHHHHhCCCeeCCeEEEE
Q 048030 7 KEMLADAFS----QFGQVTEAT-IIMDKGK--NRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 67 (93)
Q Consensus 7 ~~~l~~~f~----~~g~i~~~~-~~~~~~~--~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v 67 (93)
+++|+.+|. .||.+..+. ++.++.+ +..+|++||.|.+.++|..|+..|||..+.|+.|.+
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 578888888 999999985 7777666 889999999999999999999999999999999876
No 25
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.61 E-value=6.9e-16 Score=89.72 Aligned_cols=79 Identities=29% Similarity=0.524 Sum_probs=72.9
Q ss_pred CCccccHHHHHHHHhccCCccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecCCCCCCCCC
Q 048030 1 VSFSTTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTD 79 (93)
Q Consensus 1 l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~~~~~~ 79 (93)
|..++++.-|...|-.||.|..|+++.|..+++++||+||+|...++|.+|+..||+..+.||.|+|.++++.+....+
T Consensus 18 ladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~AkP~kikegs 96 (298)
T KOG0111|consen 18 LADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLAKPEKIKEGS 96 (298)
T ss_pred chHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeecCCccccCCC
Confidence 3457889999999999999999999999999999999999999999999999999999999999999999988765544
No 26
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.61 E-value=2.6e-15 Score=94.08 Aligned_cols=77 Identities=26% Similarity=0.459 Sum_probs=69.0
Q ss_pred CCccccHHHHHHHHhccCCccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCe-eC--CeEEEEEecCCCCCCC
Q 048030 1 VSFSTTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKL-LD--GRVIFVDNVRPSRRYN 77 (93)
Q Consensus 1 l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~-~~--g~~l~v~~~~~~~~~~ 77 (93)
|+...+|.+++++|++||.|.+|.|+++. .+.+|||+||.|.+.+.|..|++.||+.. +. ..+|.|+|+++++.+.
T Consensus 132 lsK~~te~evr~iFs~fG~Ied~~ilrd~-~~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVVkFADtqkdk~ 210 (510)
T KOG0144|consen 132 LSKQCTENEVREIFSRFGHIEDCYILRDP-DGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVVKFADTQKDKD 210 (510)
T ss_pred ccccccHHHHHHHHHhhCccchhhheecc-cccccceeEEEEehHHHHHHHHHhhccceeeccCCCceEEEecccCCCch
Confidence 56778999999999999999999999997 79999999999999999999999999986 43 5689999999887654
Q ss_pred C
Q 048030 78 T 78 (93)
Q Consensus 78 ~ 78 (93)
.
T Consensus 211 ~ 211 (510)
T KOG0144|consen 211 G 211 (510)
T ss_pred H
Confidence 4
No 27
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.60 E-value=5.2e-15 Score=90.03 Aligned_cols=74 Identities=31% Similarity=0.595 Sum_probs=66.1
Q ss_pred CCccccHHHHHHHHhccCCccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecCCCCCC
Q 048030 1 VSFSTTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRY 76 (93)
Q Consensus 1 l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~~~ 76 (93)
+|+...+-||+.+|.+||.|.++.|+.+. .-++||+||+|.+.++|++|...|||..+.||+|+|..+..+-..
T Consensus 104 IPFrFRdpDL~aMF~kfG~VldVEIIfNE--RGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~ATarV~n 177 (376)
T KOG0125|consen 104 IPFRFRDPDLRAMFEKFGKVLDVEIIFNE--RGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNNATARVHN 177 (376)
T ss_pred CCccccCccHHHHHHhhCceeeEEEEecc--CCCCccceEEecChhhHHHHHHHhhcceeeceEEEEeccchhhcc
Confidence 57778899999999999999999998874 447899999999999999999999999999999999998765433
No 28
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.60 E-value=5.8e-15 Score=80.09 Aligned_cols=74 Identities=28% Similarity=0.425 Sum_probs=69.2
Q ss_pred CccccHHHHHHHHhccCCccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecCCCCC
Q 048030 2 SFSTTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRR 75 (93)
Q Consensus 2 ~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~~ 75 (93)
..++++++|...|..||.|.++.+-.++.+|-.+|||+|+|.+.+.|++|+..+|+..+.|..|.|.|+..+..
T Consensus 81 HeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw~Fv~gp 154 (170)
T KOG0130|consen 81 HEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDWCFVKGP 154 (170)
T ss_pred CcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEEEEecCC
Confidence 46789999999999999999999999999999999999999999999999999999999999999999975544
No 29
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.59 E-value=8e-17 Score=91.02 Aligned_cols=74 Identities=27% Similarity=0.528 Sum_probs=69.2
Q ss_pred CCccccHHHHHHHHhccCCccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecCCCC
Q 048030 1 VSFSTTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSR 74 (93)
Q Consensus 1 l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~ 74 (93)
||++.+|.+|..+|+.||.+.+|.+++|+.||+++||||+.|.+.....-|+..|||..|.||.|+|.......
T Consensus 43 l~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv~~Yk 116 (219)
T KOG0126|consen 43 LPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHVSNYK 116 (219)
T ss_pred CcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeeccccc
Confidence 78999999999999999999999999999999999999999999999999999999999999999998765443
No 30
>smart00362 RRM_2 RNA recognition motif.
Probab=99.59 E-value=3e-14 Score=69.74 Aligned_cols=66 Identities=38% Similarity=0.662 Sum_probs=60.2
Q ss_pred CCccccHHHHHHHHhccCCccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEE
Q 048030 1 VSFSTTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVD 68 (93)
Q Consensus 1 l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 68 (93)
||..+++++|+++|..||.+..+.+..++ +..++++||+|.+.+.|..|+..+++..+.|+++.|+
T Consensus 7 l~~~~~~~~l~~~~~~~g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 7 LPPDVTEEDLKELFSKFGPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CCCcCCHHHHHHHHHhcCCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 67889999999999999999999888765 6788999999999999999999999999999988763
No 31
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.59 E-value=5.7e-15 Score=93.92 Aligned_cols=78 Identities=26% Similarity=0.554 Sum_probs=73.4
Q ss_pred CCccccHHHHHHHHhccCCccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecCCCCCCCC
Q 048030 1 VSFSTTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNT 78 (93)
Q Consensus 1 l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~~~~~ 78 (93)
+|+++++++|..+|+..|.|.+++++.|+.+|+.+||+|++|.+.+++..|++.||+..+.|++|+|.|+.....+..
T Consensus 26 ip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~~~~~~ 103 (435)
T KOG0108|consen 26 IPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNRKNAER 103 (435)
T ss_pred CCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeecccccchhHH
Confidence 589999999999999999999999999999999999999999999999999999999999999999999987665443
No 32
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.59 E-value=1.7e-14 Score=92.70 Aligned_cols=72 Identities=35% Similarity=0.557 Sum_probs=67.8
Q ss_pred CCccccHHHHHHHHhccCCccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecCCC
Q 048030 1 VSFSTTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPS 73 (93)
Q Consensus 1 l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~ 73 (93)
||..+++++|+++|+.||.|.+++++.++.+++.+|||||+|.+.++|.+|+. |+|..+.|+.|.|..+...
T Consensus 97 lp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~~~g~~i~v~~~~~~ 168 (457)
T TIGR01622 97 LALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQMLLGRPIIVQSSQAE 168 (457)
T ss_pred CCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCEECCeeeEEeecchh
Confidence 78899999999999999999999999999899999999999999999999997 9999999999999887644
No 33
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.59 E-value=1e-14 Score=91.68 Aligned_cols=72 Identities=28% Similarity=0.475 Sum_probs=67.0
Q ss_pred CCccccHHHHHHHHhccCCccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeC-CeEEEEEecCC
Q 048030 1 VSFSTTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLD-GRVIFVDNVRP 72 (93)
Q Consensus 1 l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~-g~~l~v~~~~~ 72 (93)
||.++.|++|.-+|++.|.|-++++++++.+|.++|||||.|.+.++|+.|++.||+..|. |+.|.|..+-.
T Consensus 91 IPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~Sva 163 (506)
T KOG0117|consen 91 IPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCVSVA 163 (506)
T ss_pred CCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEEeee
Confidence 6889999999999999999999999999999999999999999999999999999999874 88888876643
No 34
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.58 E-value=1.4e-14 Score=81.45 Aligned_cols=73 Identities=25% Similarity=0.390 Sum_probs=65.1
Q ss_pred CCccccHHHHHHHHhccCCccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecCCCCCCCC
Q 048030 1 VSFSTTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNT 78 (93)
Q Consensus 1 l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~~~~~ 78 (93)
|+..++..+|+..|..||.+..+.+... ..|||||+|++..+|+.|+..|+|..|+|.+|.|+.+........
T Consensus 18 L~~~a~k~eLE~~F~~yG~lrsvWvArn-----PPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~G~~r~~r 90 (195)
T KOG0107|consen 18 LGSRATKRELERAFSKYGPLRSVWVARN-----PPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELSTGRPRGSR 90 (195)
T ss_pred CCCCcchHHHHHHHHhcCcceeEEEeec-----CCCceEEeccCcccHHHHHhhcCCccccCceEEEEeecCCccccc
Confidence 6788999999999999999999988654 458999999999999999999999999999999999987765333
No 35
>PLN03213 repressor of silencing 3; Provisional
Probab=99.58 E-value=1.3e-14 Score=92.71 Aligned_cols=69 Identities=20% Similarity=0.405 Sum_probs=62.9
Q ss_pred CCccccHHHHHHHHhccCCccEEEEeecCCCCCcccEEEEEecCH--HHHHHHHHHhCCCeeCCeEEEEEecCCC
Q 048030 1 VSFSTTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTE--EEAQKALADMNGKLLDGRVIFVDNVRPS 73 (93)
Q Consensus 1 l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~--~~a~~a~~~l~~~~~~g~~l~v~~~~~~ 73 (93)
|++.+++++|+.+|+.||.+..+.|++ .+| +|||||+|... ..+.+|+..|+|..++|+.|+|..+++.
T Consensus 18 LSydVTEDDLravFSeFGsVkdVEIpR--ETG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNKAKP~ 88 (759)
T PLN03213 18 LGESVGRDDLLKIFSPMGTVDAVEFVR--TKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEKAKEH 88 (759)
T ss_pred CCCCCCHHHHHHHHHhcCCeeEEEEec--ccC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEeeccHH
Confidence 688999999999999999999999994 356 89999999977 6899999999999999999999998743
No 36
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.57 E-value=1.7e-14 Score=94.55 Aligned_cols=70 Identities=27% Similarity=0.418 Sum_probs=63.8
Q ss_pred CCccccHHHHHHHHhccCCccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeC-CeEEEEEecC
Q 048030 1 VSFSTTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLD-GRVIFVDNVR 71 (93)
Q Consensus 1 l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~-g~~l~v~~~~ 71 (93)
||+++++++|+.+|+.||.|.+++++++ .+++++|||||+|.+.++|++|+..||+..+. |+.|.|..+.
T Consensus 66 Lp~~~tEd~L~~~F~~~G~I~~vrl~~D-~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~~S~ 136 (578)
T TIGR01648 66 IPRDLYEDELVPLFEKAGPIYELRLMMD-FSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVCISV 136 (578)
T ss_pred CCCCCCHHHHHHHHHhhCCEEEEEEEEC-CCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCccccccccc
Confidence 7899999999999999999999999999 69999999999999999999999999999875 7777666553
No 37
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.54 E-value=8e-14 Score=82.30 Aligned_cols=67 Identities=21% Similarity=0.283 Sum_probs=60.9
Q ss_pred CCccccHHHHHHHHhccCCccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecC
Q 048030 1 VSFSTTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVR 71 (93)
Q Consensus 1 l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 71 (93)
|++.+++++|+++|+.||.|.++.++++. ...++|||+|.+.+.+..|+. |+|..|.+++|.|....
T Consensus 13 LS~~tTE~dLrefFS~~G~I~~V~I~~D~---et~gfAfVtF~d~~aaetAll-LnGa~l~d~~I~It~~~ 79 (243)
T PLN03121 13 LSPKATEKDVYDFFSHCGAIEHVEIIRSG---EYACTAYVTFKDAYALETAVL-LSGATIVDQRVCITRWG 79 (243)
T ss_pred CCCCCCHHHHHHHHHhcCCeEEEEEecCC---CcceEEEEEECCHHHHHHHHh-cCCCeeCCceEEEEeCc
Confidence 68899999999999999999999999874 344799999999999999996 99999999999998765
No 38
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.54 E-value=4.6e-14 Score=75.93 Aligned_cols=71 Identities=30% Similarity=0.475 Sum_probs=65.5
Q ss_pred CCccccHHHHHHHHhccCCccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecC
Q 048030 1 VSFSTTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVR 71 (93)
Q Consensus 1 l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 71 (93)
|++.++|++|.++|+.+|.|..|-+=.++.+-+.-|||||+|.+.++|..|++.+++..+..+.|+|.|.-
T Consensus 44 lSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D~ 114 (153)
T KOG0121|consen 44 LSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWDA 114 (153)
T ss_pred eeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeeccc
Confidence 56789999999999999999998777777788888999999999999999999999999999999999864
No 39
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.52 E-value=1.4e-13 Score=82.21 Aligned_cols=71 Identities=34% Similarity=0.703 Sum_probs=68.2
Q ss_pred CCccccHHHHHHHHhccCCccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecC
Q 048030 1 VSFSTTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVR 71 (93)
Q Consensus 1 l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 71 (93)
||.++++++|+.+|..||.+..+.+..++.++..+|+|||.|.+.+++..|+..+++..+.|++|.|.+..
T Consensus 123 L~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~ 193 (306)
T COG0724 123 LPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQ 193 (306)
T ss_pred CCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeeccc
Confidence 68899999999999999999999999998899999999999999999999999999999999999999965
No 40
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.51 E-value=5.6e-13 Score=65.44 Aligned_cols=68 Identities=43% Similarity=0.686 Sum_probs=61.4
Q ss_pred CCccccHHHHHHHHhccCCccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEe
Q 048030 1 VSFSTTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDN 69 (93)
Q Consensus 1 l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 69 (93)
||..+++++|+.+|..+|.+..+.+..++.. ..++++||+|.+.++|..|+..+++..+.|+.+.|.+
T Consensus 7 l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~-~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 7 LPPDVTEEDLRELFSKFGKVESVRIVRDKDT-KSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CCCccCHHHHHHHHHhcCCEEEEEEeeCCCC-CcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 6888999999999999999999998877633 6789999999999999999999999999999998863
No 41
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.50 E-value=2.6e-13 Score=88.05 Aligned_cols=68 Identities=22% Similarity=0.308 Sum_probs=62.1
Q ss_pred CCc-cccHHHHHHHHhccCCccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecCCC
Q 048030 1 VSF-STTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPS 73 (93)
Q Consensus 1 l~~-~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~ 73 (93)
||+ .+++++|+.+|+.||.|..++++.++ +|+|||+|.+.++|..|+..||+..+.|++|.|.+++..
T Consensus 283 L~~~~vt~~~L~~lF~~yG~V~~vki~~~~-----~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~s~~~ 351 (481)
T TIGR01649 283 LHQEKVNCDRLFNLFCVYGNVERVKFMKNK-----KETALIEMADPYQAQLALTHLNGVKLFGKPLRVCPSKQQ 351 (481)
T ss_pred CCCCCCCHHHHHHHHHhcCCeEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEcccc
Confidence 566 59999999999999999999998763 589999999999999999999999999999999998654
No 42
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.50 E-value=2.9e-14 Score=85.13 Aligned_cols=75 Identities=28% Similarity=0.469 Sum_probs=70.8
Q ss_pred CCccccHHHHHHHHhccCCccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecCCCCC
Q 048030 1 VSFSTTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRR 75 (93)
Q Consensus 1 l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~~ 75 (93)
||.+..+.+|..+|..||.|.+-++..|+.+..+++|+||.|.+...+++||..|||..|+-++|+|...+++..
T Consensus 293 LPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLKVQLKRPkda 367 (371)
T KOG0146|consen 293 LPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLKRPKDA 367 (371)
T ss_pred CchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhhhhhcCcccc
Confidence 688899999999999999999999999999999999999999999999999999999999999999998777653
No 43
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.49 E-value=3.2e-13 Score=88.69 Aligned_cols=67 Identities=36% Similarity=0.626 Sum_probs=61.2
Q ss_pred CCccccHHHHHHHHhcc--CCccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecCCCCC
Q 048030 1 VSFSTTKEMLADAFSQF--GQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRR 75 (93)
Q Consensus 1 l~~~~~~~~l~~~f~~~--g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~~ 75 (93)
|+.++++++|+++|+.| |.|..+.+++ +||||+|.+.++|.+|+..||+..|.|+.|+|.++++...
T Consensus 241 L~~~~tee~L~~~F~~f~~G~I~rV~~~r--------gfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~~Akp~~~ 309 (578)
T TIGR01648 241 LMTTTTEEIIEKSFSEFKPGKVERVKKIR--------DYAFVHFEDREDAVKAMDELNGKELEGSEIEVTLAKPVDK 309 (578)
T ss_pred CCCCCCHHHHHHHHHhcCCCceEEEEeec--------CeEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEccCCCc
Confidence 68899999999999999 9999987653 5999999999999999999999999999999999987543
No 44
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.49 E-value=3.9e-13 Score=80.12 Aligned_cols=73 Identities=34% Similarity=0.519 Sum_probs=68.9
Q ss_pred CCccccHHHHHHHHhccCCccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecCCC
Q 048030 1 VSFSTTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPS 73 (93)
Q Consensus 1 l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~ 73 (93)
|.++++|.-|+++|..||.+.++++++|..+.+.+||+||...+-++|.-|+..|||..++++.|.|.+..++
T Consensus 286 Lspd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~rvLQVsFKtnk 358 (360)
T KOG0145|consen 286 LSPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNK 358 (360)
T ss_pred cCCCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccceEEEEEEecCC
Confidence 5688999999999999999999999999999999999999999999999999999999999999999986654
No 45
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.47 E-value=7.2e-14 Score=86.56 Aligned_cols=67 Identities=34% Similarity=0.625 Sum_probs=64.6
Q ss_pred CccccHHHHHHHHhccCCccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEE
Q 048030 2 SFSTTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVD 68 (93)
Q Consensus 2 ~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 68 (93)
.+++.|+.|+..|..||.|.+|.+.||+.+++++|||||+|+-++.|+-|++.|||..++||.|+|.
T Consensus 122 sfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVg 188 (544)
T KOG0124|consen 122 SFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVG 188 (544)
T ss_pred EEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCcccccc
Confidence 5678899999999999999999999999999999999999999999999999999999999999997
No 46
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.47 E-value=5.8e-13 Score=79.54 Aligned_cols=68 Identities=26% Similarity=0.535 Sum_probs=61.9
Q ss_pred CccccHHHHHHHHhccCCccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecCCCCC
Q 048030 2 SFSTTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRR 75 (93)
Q Consensus 2 ~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~~ 75 (93)
+..+++++|++.|+.||.|.+|++..++ ||+||.|.+.+.|..||..+|+..|.|..+++.|-+....
T Consensus 173 ~~~lte~~mr~~Fs~fG~I~EVRvFk~q------GYaFVrF~tkEaAahAIv~mNntei~G~~VkCsWGKe~~~ 240 (321)
T KOG0148|consen 173 ASGLTEDLMRQTFSPFGPIQEVRVFKDQ------GYAFVRFETKEAAAHAIVQMNNTEIGGQLVRCSWGKEGDD 240 (321)
T ss_pred CccccHHHHHHhcccCCcceEEEEeccc------ceEEEEecchhhHHHHHHHhcCceeCceEEEEeccccCCC
Confidence 3458999999999999999999998775 7999999999999999999999999999999999886543
No 47
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.47 E-value=2.7e-13 Score=87.32 Aligned_cols=77 Identities=34% Similarity=0.557 Sum_probs=70.8
Q ss_pred CCccccHHHHHHHHhccCCccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecCCCCCCCC
Q 048030 1 VSFSTTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNT 78 (93)
Q Consensus 1 l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~~~~~ 78 (93)
||+.+...+|+.+|+.||.+.++.|++.+ .|+..|||||+|....+|..|+..+|+..|.||+|.|.|+-++..+..
T Consensus 125 LPf~~k~~dLk~vFs~~G~V~Ei~IP~k~-dgklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~Kd~ye~ 201 (678)
T KOG0127|consen 125 LPFKCKKPDLKNVFSNFGKVVEIVIPRKK-DGKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVDKDTYED 201 (678)
T ss_pred CCcccCcHHHHHHHhhcceEEEEEcccCC-CCCccceEEEEEeeHHHHHHHHHhccCceecCceeEEeeecccccccc
Confidence 78999999999999999999999999766 566669999999999999999999999999999999999988876655
No 48
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.44 E-value=2.1e-13 Score=77.26 Aligned_cols=71 Identities=32% Similarity=0.467 Sum_probs=67.2
Q ss_pred CCccccHHHHHHHHhccCCccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecC
Q 048030 1 VSFSTTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVR 71 (93)
Q Consensus 1 l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 71 (93)
|+..++++.|.++|-..|.+.++.+++++.++.++||||++|.++++|+-|++-|+...+.|++|+|..+.
T Consensus 17 ld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~kas 87 (203)
T KOG0131|consen 17 LDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKAS 87 (203)
T ss_pred CCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEecc
Confidence 46678899999999999999999999999999999999999999999999999999889999999999876
No 49
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.44 E-value=1.7e-12 Score=84.28 Aligned_cols=68 Identities=19% Similarity=0.269 Sum_probs=60.5
Q ss_pred CCccccHHHHHHHHhccCCccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHh--CCCeeCCeEEEEEecCCCC
Q 048030 1 VSFSTTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADM--NGKLLDGRVIFVDNVRPSR 74 (93)
Q Consensus 1 l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l--~~~~~~g~~l~v~~~~~~~ 74 (93)
||+++++++|+++|+.||.|.++.++.+ +++|||+|.+.++|.+|+..+ ++..+.|++|.|.++..+.
T Consensus 10 Lp~~~te~~L~~~f~~fG~V~~v~i~~~------k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~s~~~~ 79 (481)
T TIGR01649 10 LPQDVVEADLVEALIPFGPVSYVMMLPG------KRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNYSTSQE 79 (481)
T ss_pred CCCCCCHHHHHHHHHhcCCeeEEEEECC------CCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEecCCcc
Confidence 7899999999999999999999988753 379999999999999999875 6778999999999987543
No 50
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.41 E-value=4.7e-13 Score=82.61 Aligned_cols=75 Identities=29% Similarity=0.481 Sum_probs=69.5
Q ss_pred CCccccHHHHHHHHhccCCccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecCCCCC
Q 048030 1 VSFSTTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRR 75 (93)
Q Consensus 1 l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~~ 75 (93)
|.+-++.++|.-+|+.||.|.+|.++++..+|.+..||||+|.+.+++++|.-.|++..|.+++|+|.++.+...
T Consensus 247 LNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDFSQSVsk 321 (479)
T KOG0415|consen 247 LNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDFSQSVSK 321 (479)
T ss_pred cCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeehhhhhhh
Confidence 456788899999999999999999999999999999999999999999999999999999999999999875443
No 51
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.40 E-value=4.4e-12 Score=66.11 Aligned_cols=70 Identities=26% Similarity=0.450 Sum_probs=62.3
Q ss_pred CCccccHHHHHHHHhccCCccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecCCC
Q 048030 1 VSFSTTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPS 73 (93)
Q Consensus 1 l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~ 73 (93)
||+.++.++..++|.+||.|..|++=..+ ..+|-|||.|++..+|.+|+..|+|..+.++.+.|-+..+.
T Consensus 26 Lp~~ITseemydlFGkyg~IrQIRiG~~k---~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyyq~~ 95 (124)
T KOG0114|consen 26 LPFKITSEEMYDLFGKYGTIRQIRIGNTK---ETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYYQPE 95 (124)
T ss_pred CCccccHHHHHHHhhcccceEEEEecCcc---CcCceEEEEehHhhhHHHHHHHhcccccCCceEEEEecCHH
Confidence 79999999999999999999999884433 34689999999999999999999999999999999887644
No 52
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.38 E-value=2.1e-12 Score=81.52 Aligned_cols=68 Identities=38% Similarity=0.560 Sum_probs=62.2
Q ss_pred CCccccHHHHHHHHhccCCccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecCCCCCC
Q 048030 1 VSFSTTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRY 76 (93)
Q Consensus 1 l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~~~ 76 (93)
|+.++|++.|+++|..||.+..++.++| ||||.|.++++|.+|++.+|+..|.|..|.|..+++....
T Consensus 267 L~~~tTeE~lk~~F~~~G~veRVkk~rD--------YaFVHf~eR~davkAm~~~ngkeldG~~iEvtLAKP~~k~ 334 (506)
T KOG0117|consen 267 LMESTTEETLKKLFNEFGKVERVKKPRD--------YAFVHFAEREDAVKAMKETNGKELDGSPIEVTLAKPVDKK 334 (506)
T ss_pred cchhhhHHHHHHHHHhccceEEeecccc--------eeEEeecchHHHHHHHHHhcCceecCceEEEEecCChhhh
Confidence 5678999999999999999999988755 9999999999999999999999999999999999876543
No 53
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.37 E-value=2.2e-12 Score=73.14 Aligned_cols=77 Identities=26% Similarity=0.470 Sum_probs=69.9
Q ss_pred CCccccHHHHHHHHhccCCccE-EEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecCCCCCCC
Q 048030 1 VSFSTTKEMLADAFSQFGQVTE-ATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYN 77 (93)
Q Consensus 1 l~~~~~~~~l~~~f~~~g~i~~-~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~~~~ 77 (93)
|.+++++..|...|+.||.+.. -++++++.+|..++|+|+.|.+.+.+.+|+..+++..++.+++.|.++..+...+
T Consensus 104 Ld~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l~nr~itv~ya~k~~~kg 181 (203)
T KOG0131|consen 104 LDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQYLCNRPITVSYAFKKDTKG 181 (203)
T ss_pred cCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhccchhcCCceEEEEEEecCCCc
Confidence 5678999999999999999865 4889999999999999999999999999999999999999999999998765544
No 54
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.36 E-value=5.4e-12 Score=76.13 Aligned_cols=70 Identities=27% Similarity=0.506 Sum_probs=64.0
Q ss_pred CCccccHHHHHHHHhccCCccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecCCCCCCCC
Q 048030 1 VSFSTTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNT 78 (93)
Q Consensus 1 l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~~~~~ 78 (93)
||..+++.+|+.+|++||.+.+|.|+.+ |+||..++...+..|++.||+..++|..|.|+.++++.....
T Consensus 10 Lp~~~~~~elr~lFe~ygkVlECDIvKN--------YgFVHiEdktaaedairNLhgYtLhg~nInVeaSksKsk~st 79 (346)
T KOG0109|consen 10 LPREATEQELRSLFEQYGKVLECDIVKN--------YGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSKSKAST 79 (346)
T ss_pred CCcccchHHHHHHHHhhCceEeeeeecc--------cceEEeecccccHHHHhhcccceecceEEEEEeccccCCCcc
Confidence 6889999999999999999999999765 899999999999999999999999999999999998844443
No 55
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.35 E-value=4.4e-12 Score=75.97 Aligned_cols=75 Identities=23% Similarity=0.402 Sum_probs=65.6
Q ss_pred CccccHHHHHHHHhccCCccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeC---CeEEEEEecCCCCCCC
Q 048030 2 SFSTTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLD---GRVIFVDNVRPSRRYN 77 (93)
Q Consensus 2 ~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~---g~~l~v~~~~~~~~~~ 77 (93)
...-+|+|++.+|..||.|.+|.+++.. .|.++||+||.|.+..+|+.||..|||.... ...|.|++++..+.+.
T Consensus 28 ~kqq~e~dvrrlf~pfG~~~e~tvlrg~-dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVVK~ADTdkER~ 105 (371)
T KOG0146|consen 28 NKQQSEDDVRRLFQPFGNIEECTVLRGP-DGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVVKFADTDKERT 105 (371)
T ss_pred cccccHHHHHHHhcccCCcceeEEecCC-CCCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEEEeccchHHHH
Confidence 4456899999999999999999999886 8999999999999999999999999998743 4679999998776543
No 56
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.34 E-value=4e-12 Score=78.99 Aligned_cols=75 Identities=20% Similarity=0.359 Sum_probs=68.8
Q ss_pred CCccccHHHHHHHHhccCCccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecCCCCC
Q 048030 1 VSFSTTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRR 75 (93)
Q Consensus 1 l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~~ 75 (93)
+.++.+++||+.+|+.||.|..|++.+++..++++||+|++|.+......|+..||-..++|.-|+|..+-..+.
T Consensus 218 vHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyLRVGk~vTPP~ 292 (544)
T KOG0124|consen 218 VHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCVTPPD 292 (544)
T ss_pred cCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcchhhcccceEecccccCCCc
Confidence 357899999999999999999999999999999999999999999999999999999999999999987765443
No 57
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.33 E-value=3.4e-12 Score=72.79 Aligned_cols=70 Identities=19% Similarity=0.323 Sum_probs=62.6
Q ss_pred CCccccHHHHHHHHhccCCccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecCCC
Q 048030 1 VSFSTTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPS 73 (93)
Q Consensus 1 l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~ 73 (93)
||.++.+.+|+.+|.+||.|.+|.+...+ ....||||+|++..+|+.|+..-+|..+.|.+|+|++++.-
T Consensus 14 LP~diRekeieDlFyKyg~i~~ieLK~r~---g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfprgg 83 (241)
T KOG0105|consen 14 LPGDIREKEIEDLFYKYGRIREIELKNRP---GPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPRGG 83 (241)
T ss_pred CCcchhhccHHHHHhhhcceEEEEeccCC---CCCCeeEEEecCccchhhhhhcccccccCcceEEEEeccCC
Confidence 79999999999999999999999874432 24579999999999999999999999999999999998755
No 58
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.33 E-value=4.6e-12 Score=81.47 Aligned_cols=71 Identities=39% Similarity=0.708 Sum_probs=66.6
Q ss_pred CCccccHHHHHHHHhccCCccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecC
Q 048030 1 VSFSTTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVR 71 (93)
Q Consensus 1 l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 71 (93)
|.+.++++.|+..|+.||.|..+.+.++..+|..+||+||+|.+.++|.+|+..|||..+-|+.|+|..-.
T Consensus 286 LHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v~ 356 (549)
T KOG0147|consen 286 LHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVVT 356 (549)
T ss_pred cccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEee
Confidence 56789999999999999999999999998899999999999999999999999999999999999887654
No 59
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=99.32 E-value=9.6e-12 Score=71.71 Aligned_cols=73 Identities=30% Similarity=0.438 Sum_probs=64.3
Q ss_pred CCccccHHHHHHHHhcc-CCccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecCCC
Q 048030 1 VSFSTTKEMLADAFSQF-GQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPS 73 (93)
Q Consensus 1 l~~~~~~~~l~~~f~~~-g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~ 73 (93)
+|..+.+.++..+|..+ |.+...++.+++.||.++|||||+|.+.+.|.-|-+.||+..++++.|.|.+-.+.
T Consensus 57 ~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~vmppe 130 (214)
T KOG4208|consen 57 IPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECHVMPPE 130 (214)
T ss_pred cccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeEEeCch
Confidence 35667788899999988 67778888899999999999999999999999999999999999999988876544
No 60
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.29 E-value=1.1e-11 Score=80.13 Aligned_cols=76 Identities=36% Similarity=0.677 Sum_probs=71.1
Q ss_pred CCccccHHHHHHHHhccCCccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecCCCCCC
Q 048030 1 VSFSTTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRY 76 (93)
Q Consensus 1 l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~~~ 76 (93)
||++++.++|.++|+.+|.|.++.++.++.++.++||+||.|+..+++++|+..+.+..+.|+.|.|..+..+...
T Consensus 13 lp~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~~A~~R~r~ 88 (678)
T KOG0127|consen 13 LPFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNVDPAKKRARS 88 (678)
T ss_pred CCCccchhHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCcccceecccccccccccc
Confidence 7899999999999999999999999999999999999999999999999999999999999999999998765443
No 61
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.28 E-value=4.1e-11 Score=78.13 Aligned_cols=65 Identities=22% Similarity=0.384 Sum_probs=57.2
Q ss_pred HHHHHHHhccCCccEEEEeecC---CCCCcccEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecCC
Q 048030 8 EMLADAFSQFGQVTEATIIMDK---GKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRP 72 (93)
Q Consensus 8 ~~l~~~f~~~g~i~~~~~~~~~---~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~ 72 (93)
++|+++|++||.|..+.|++.. .++...|++||.|.+.++|..|+..|||..++|+.|.|.+...
T Consensus 434 edl~~~f~~~G~v~~v~i~~~~~~~~~~~~~G~~fV~F~~~e~A~~A~~~lnGr~~~gr~v~~~~~~~ 501 (509)
T TIGR01642 434 EDVKTEFSKYGPLINIVIPRPNGDRNSTPGVGKVFLEYADVRSAEKAMEGMNGRKFNDRVVVAAFYGE 501 (509)
T ss_pred HHHHHHHHhcCCeeEEEeeccCcCCCcCCCcceEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEeCH
Confidence 6799999999999999998642 3455678999999999999999999999999999999998653
No 62
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.27 E-value=3.2e-11 Score=76.04 Aligned_cols=74 Identities=35% Similarity=0.632 Sum_probs=66.8
Q ss_pred CCccccHHHHHHHHhccCCccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecCCCCCCC
Q 048030 1 VSFSTTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYN 77 (93)
Q Consensus 1 l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~~~~ 77 (93)
|+++++..+|..+|+.||.|.+|++..+. .| .+|| ||+|.+.+.|.+|+..|||..+.+++|.|.....+..+.
T Consensus 84 l~~~~~~~~~~d~f~~~g~ilS~kv~~~~-~g-~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~~~er~ 157 (369)
T KOG0123|consen 84 LDESIDNKSLYDTFSEFGNILSCKVATDE-NG-SKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFERKEERE 157 (369)
T ss_pred CCcccCcHHHHHHHHhhcCeeEEEEEEcC-CC-ceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccchhhhc
Confidence 67889999999999999999999999987 44 8899 999999999999999999999999999998877665544
No 63
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.26 E-value=3.1e-11 Score=76.51 Aligned_cols=71 Identities=24% Similarity=0.430 Sum_probs=65.8
Q ss_pred CCccccHHHHHHHHh-ccCCccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecCC
Q 048030 1 VSFSTTKEMLADAFS-QFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRP 72 (93)
Q Consensus 1 l~~~~~~~~l~~~f~-~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~ 72 (93)
+|+++.|.+|+.+|. +.|+|..|.++.|. +|+.+|||.|+|.+++.+++|++.||...+.||+|.|+....
T Consensus 52 Ipyd~rWqdLKdLvrekvGev~yveLl~D~-~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd~d 123 (608)
T KOG4212|consen 52 IPYDYRWQDLKDLVREKVGEVEYVELLFDE-SGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKEDHD 123 (608)
T ss_pred CcchhhhHhHHHHHHHhcCceEeeeeeccc-CCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEeccCc
Confidence 589999999999997 57999999999996 999999999999999999999999999999999999987643
No 64
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.25 E-value=4.5e-11 Score=75.39 Aligned_cols=70 Identities=33% Similarity=0.441 Sum_probs=65.5
Q ss_pred ccccHHHHHHHHhccCCccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecCCCCC
Q 048030 3 FSTTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRR 75 (93)
Q Consensus 3 ~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~~ 75 (93)
+++++..|.+.|+.+|.+.++++-++. + +.|||||.|.+..+|.+||..||...+.|++++|.|+...+.
T Consensus 8 ~~v~e~~l~~~f~~~~~v~s~rvc~d~-t--slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd~~ 77 (369)
T KOG0123|consen 8 PDVTEAMLFDKFSPAGPVLSIRVCRDA-T--SLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRDPS 77 (369)
T ss_pred CcCChHHHHHHhcccCCceeEEEeecC-C--ccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhccCCc
Confidence 578999999999999999999999997 5 999999999999999999999999999999999999876654
No 65
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.21 E-value=7.7e-11 Score=68.79 Aligned_cols=64 Identities=23% Similarity=0.406 Sum_probs=56.4
Q ss_pred HHHHHHhccCCccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecCCCCC
Q 048030 9 MLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRR 75 (93)
Q Consensus 9 ~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~~ 75 (93)
.|..+|+.||.|..|.... +.+.+|-|||.|.+.+.|..|+..|+|..+.|+.++|+|++++..
T Consensus 29 sL~~LFsqfG~ildI~a~k---t~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriqyA~s~sd 92 (221)
T KOG4206|consen 29 SLYLLFSQFGKILDISAFK---TPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQYAKSDSD 92 (221)
T ss_pred HHHHHHHhhCCeEEEEecC---CCCccCceEEEecChhHHHHHHHHhcCCcccCchhheecccCccc
Confidence 3444999999999887643 678899999999999999999999999999999999999987644
No 66
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.20 E-value=1.4e-11 Score=81.21 Aligned_cols=74 Identities=27% Similarity=0.533 Sum_probs=67.8
Q ss_pred CCccccHHHHHHHHhccCCccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecCCCC
Q 048030 1 VSFSTTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSR 74 (93)
Q Consensus 1 l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~ 74 (93)
+|+..+-.+++.+|..||.+..++++.....+.++|||||+|-+..+|.+|+.+|...-+.||+|.++|++...
T Consensus 621 ipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~STHlyGRrLVLEwA~~d~ 694 (725)
T KOG0110|consen 621 IPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDALGSTHLYGRRLVLEWAKSDN 694 (725)
T ss_pred cchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHHHHHhhcccceechhhheehhccch
Confidence 57888999999999999999999998876677789999999999999999999999888999999999998654
No 67
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=99.10 E-value=1.5e-09 Score=64.80 Aligned_cols=75 Identities=24% Similarity=0.505 Sum_probs=66.7
Q ss_pred CCccccHHHHHHHHhccCCccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecCCCCCC
Q 048030 1 VSFSTTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRY 76 (93)
Q Consensus 1 l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~~~ 76 (93)
||+.+.+++|+++|..||.+..+.+.+++ .|.+.|.|-|.|...++|..|++.+++..+.|+.|.+....+....
T Consensus 91 L~~~V~~~Dl~eLF~~~~~~~r~~vhy~~-~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i~~~~~~ 165 (243)
T KOG0533|consen 91 LPYGVIDADLKELFAEFGELKRVAVHYDR-AGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEIISSPSQS 165 (243)
T ss_pred CCcCcchHHHHHHHHHhccceEEeeccCC-CCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEecCcccc
Confidence 78899999999999999988888887876 8999999999999999999999999999999999988877655443
No 68
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.10 E-value=1e-09 Score=67.72 Aligned_cols=65 Identities=29% Similarity=0.471 Sum_probs=56.0
Q ss_pred ccccHHHHHHHHhccCCccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHH-hCCCeeCCeEEEEEecCCC
Q 048030 3 FSTTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALAD-MNGKLLDGRVIFVDNVRPS 73 (93)
Q Consensus 3 ~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~-l~~~~~~g~~l~v~~~~~~ 73 (93)
..+++.+|+.+|.+||.|..+.++... +||||+|.+...|+.|... ++...|.|.+|.|.|.+++
T Consensus 238 d~v~e~dIrdhFyqyGeirsi~~~~~~------~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~Wg~~~ 303 (377)
T KOG0153|consen 238 DEVLEQDIRDHFYQYGEIRSIRILPRK------GCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIKWGRPK 303 (377)
T ss_pred cchhHHHHHHHHhhcCCeeeEEeeccc------ccceeeehhhHHHHHHHHhhcceeeecceEEEEEeCCCc
Confidence 478999999999999999999887653 5999999999999988764 5555689999999999983
No 69
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.09 E-value=3e-10 Score=68.78 Aligned_cols=69 Identities=26% Similarity=0.462 Sum_probs=61.3
Q ss_pred CccccHHHHHHHHhccCCccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecCCCCCCCC
Q 048030 2 SFSTTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNT 78 (93)
Q Consensus 2 ~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~~~~~ 78 (93)
.+..+..+++..|.+||.+.+++|+++ |+||.|.-.++|..|++.|++..+.|++++|+.+.+......
T Consensus 87 s~tctn~ElRa~fe~ygpviecdivkd--------y~fvh~d~~eda~~air~l~~~~~~gk~m~vq~stsrlrtap 155 (346)
T KOG0109|consen 87 SPTCTNQELRAKFEKYGPVIECDIVKD--------YAFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAP 155 (346)
T ss_pred CccccCHHHhhhhcccCCceeeeeecc--------eeEEEEeeccchHHHHhcccccccccceeeeeeeccccccCC
Confidence 455677899999999999999999775 999999999999999999999999999999999887655444
No 70
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.08 E-value=1.3e-09 Score=72.32 Aligned_cols=72 Identities=36% Similarity=0.516 Sum_probs=62.5
Q ss_pred CCccccHHHHHHHHhccCCccEEEEeecCCCC---CcccEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecCC
Q 048030 1 VSFSTTKEMLADAFSQFGQVTEATIIMDKGKN---RSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRP 72 (93)
Q Consensus 1 l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~---~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~ 72 (93)
|+++++.+++...|...|.|..+.|...+... -+.||+||+|.+.++|++|++.|+|..+.|+.|.|+++..
T Consensus 523 lnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~~ 597 (725)
T KOG0110|consen 523 LNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKISEN 597 (725)
T ss_pred CCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEeccC
Confidence 57889999999999999999999886654221 1349999999999999999999999999999999999983
No 71
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=99.03 E-value=1.4e-09 Score=72.89 Aligned_cols=71 Identities=18% Similarity=0.361 Sum_probs=63.0
Q ss_pred CCccccHHHHHHHHhccCCccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecCCCCCCC
Q 048030 1 VSFSTTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYN 77 (93)
Q Consensus 1 l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~~~~ 77 (93)
|+..+++.+|..+|+.||.|.+|.++. .++||||......+|.+|+..|....+.++.|+|.|+..+....
T Consensus 429 i~k~v~e~dL~~~feefGeiqSi~li~------~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~g~G~ks 499 (894)
T KOG0132|consen 429 IPKNVTEQDLANLFEEFGEIQSIILIP------PRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAVGKGPKS 499 (894)
T ss_pred ccchhhHHHHHHHHHhcccceeEeecc------CCceeEEEEeehhHHHHHHHHHhcccccceeeEEeeeccCCcch
Confidence 577899999999999999999997754 45799999999999999999999999999999999998665433
No 72
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=99.02 E-value=3.1e-09 Score=67.88 Aligned_cols=74 Identities=26% Similarity=0.452 Sum_probs=62.6
Q ss_pred CCccccHHHHHHHHhccCCccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecCCCCC
Q 048030 1 VSFSTTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRR 75 (93)
Q Consensus 1 l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~~ 75 (93)
||++++..+|+++|..||.|....|......++..+|+||+|.+...+..|+.+ +-..+++++|.|+..+....
T Consensus 296 lP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A-sp~~ig~~kl~Veek~~~~~ 369 (419)
T KOG0116|consen 296 LPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA-SPLEIGGRKLNVEEKRPGFR 369 (419)
T ss_pred CCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhc-CccccCCeeEEEEecccccc
Confidence 799999999999999999999887766543455559999999999999999996 46678999999998876433
No 73
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.01 E-value=1.2e-08 Score=60.11 Aligned_cols=79 Identities=16% Similarity=0.315 Sum_probs=61.8
Q ss_pred CCccccHHHHHHHHhccCCccEEEEe-ecCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeC---CeEEEEEecCCCCCC
Q 048030 1 VSFSTTKEMLADAFSQFGQVTEATII-MDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLD---GRVIFVDNVRPSRRY 76 (93)
Q Consensus 1 l~~~~~~~~l~~~f~~~g~i~~~~~~-~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~---g~~l~v~~~~~~~~~ 76 (93)
||.++...+|..+|..|.......+- .++..+..+-++|++|.+..+|.+|+..|||..++ +..|+|+.+++..+.
T Consensus 42 LP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLhiElAKSNtK~ 121 (284)
T KOG1457|consen 42 LPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLHIELAKSNTKR 121 (284)
T ss_pred CCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeEeeehhcCccc
Confidence 68899999999999998654444332 23333344579999999999999999999999875 788999999877665
Q ss_pred CCC
Q 048030 77 NTD 79 (93)
Q Consensus 77 ~~~ 79 (93)
.+.
T Consensus 122 kr~ 124 (284)
T KOG1457|consen 122 KRR 124 (284)
T ss_pred ccC
Confidence 554
No 74
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=98.98 E-value=5.8e-10 Score=68.82 Aligned_cols=76 Identities=36% Similarity=0.583 Sum_probs=66.0
Q ss_pred CCccccHHHHHHHHhccCCccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecCCCCCCC
Q 048030 1 VSFSTTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYN 77 (93)
Q Consensus 1 l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~~~~ 77 (93)
|+++++++.|+..|..||.+.++.+++++.++..++|+||+|.+.+...+++. ...+.|.|+.|.+..+.+.....
T Consensus 14 isw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~-~~~h~~dgr~ve~k~av~r~~~~ 89 (311)
T KOG4205|consen 14 LSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLN-ARTHKLDGRSVEPKRAVSREDQT 89 (311)
T ss_pred cCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeec-ccccccCCccccceeccCccccc
Confidence 67899999999999999999999999999999999999999999888888876 34566889999888887665443
No 75
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.97 E-value=3e-09 Score=69.74 Aligned_cols=74 Identities=30% Similarity=0.498 Sum_probs=65.3
Q ss_pred CccccHHHHHHHHhccCCccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecCCCCC
Q 048030 2 SFSTTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRR 75 (93)
Q Consensus 2 ~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~~ 75 (93)
+..+...+|+.+|++||.+.-.+++.+-.+--.++|+||++.+..+|.+.|..||...++|+-|.|+.++..+.
T Consensus 414 SstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEkaKNEp~ 487 (940)
T KOG4661|consen 414 SSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKAKNEPG 487 (940)
T ss_pred ccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeecccCcc
Confidence 34556689999999999999999988766777789999999999999999999999999999999998876543
No 76
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.87 E-value=1.7e-08 Score=67.38 Aligned_cols=75 Identities=20% Similarity=0.396 Sum_probs=65.3
Q ss_pred CCccccHHHHHHHHhccCCccEEEEeecCC---CCCcccEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecCCCCC
Q 048030 1 VSFSTTKEMLADAFSQFGQVTEATIIMDKG---KNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRR 75 (93)
Q Consensus 1 l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~---~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~~ 75 (93)
|++.++++.|...|..||.+..++|++.+. ....+.|+||.|-+..++++|+..|+|..+.+..+++.|++...-
T Consensus 182 lnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K~gWgk~V~i 259 (877)
T KOG0151|consen 182 LNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMKLGWGKAVPI 259 (877)
T ss_pred CCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeeeecccccccc
Confidence 578899999999999999999999987543 334467999999999999999999999999999999999975543
No 77
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.86 E-value=2.9e-09 Score=63.48 Aligned_cols=69 Identities=33% Similarity=0.588 Sum_probs=62.1
Q ss_pred ccccHHHHHHHHhccCCccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecC
Q 048030 3 FSTTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVR 71 (93)
Q Consensus 3 ~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 71 (93)
.+++.+-|-..|.+|-.-..-++++++.+|+.+||+||.|.+..++.+|+..|+|..++.+.|.++.+.
T Consensus 200 Nevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklRkS~ 268 (290)
T KOG0226|consen 200 NEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLRKSE 268 (290)
T ss_pred ccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHhhhhh
Confidence 468888999999999877777889999999999999999999999999999999999999988876554
No 78
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=98.86 E-value=3.9e-09 Score=65.23 Aligned_cols=76 Identities=30% Similarity=0.531 Sum_probs=67.9
Q ss_pred CCccccHHHHHHHHhccCCccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecCCCCCCC
Q 048030 1 VSFSTTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYN 77 (93)
Q Consensus 1 l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~~~~ 77 (93)
||.++++++++..|.+||.|..+.++.|..+...++|+||.|.+++.+..++. ..-+.++++.+.|..+.++....
T Consensus 105 ~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~-~~f~~~~gk~vevkrA~pk~~~~ 180 (311)
T KOG4205|consen 105 LPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTL-QKFHDFNGKKVEVKRAIPKEVMQ 180 (311)
T ss_pred cCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceecc-cceeeecCceeeEeeccchhhcc
Confidence 68899999999999999999999999999999999999999999999999977 46677999999999987765433
No 79
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.80 E-value=3.7e-09 Score=68.50 Aligned_cols=61 Identities=23% Similarity=0.432 Sum_probs=55.2
Q ss_pred CCccccHHHHHHHHhccCCccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeCCeEEE
Q 048030 1 VSFSTTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIF 66 (93)
Q Consensus 1 l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~ 66 (93)
||..+++++|+..|+.||+|..++. +-..++..||+|.|..+|++|+++|++..+.|+++.
T Consensus 83 l~~~Vsn~~L~~~f~~yGeir~ir~-----t~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 83 LPRSVSNDTLLRIFGAYGEIREIRE-----TPNKRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred cCCcCCHHHHHHHHHhhcchhhhhc-----ccccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 6889999999999999999999765 445678999999999999999999999999998877
No 80
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.76 E-value=1.6e-08 Score=59.44 Aligned_cols=65 Identities=25% Similarity=0.584 Sum_probs=58.4
Q ss_pred CCccccHHHHHHHHhccCCccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecCCC
Q 048030 1 VSFSTTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPS 73 (93)
Q Consensus 1 l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~ 73 (93)
||+.+.+.++..+|..||.+.++.+. .+|+||.|.+..+|..|+..|++..++|-++.|++++..
T Consensus 9 ~~~~~~~~d~E~~f~~yg~~~d~~mk--------~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~ 73 (216)
T KOG0106|consen 9 LPYRARERDVERFFKGYGKIPDADMK--------NGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGK 73 (216)
T ss_pred cCCccchhHHHHHHhhccccccceee--------cccceeccCchhhhhcccchhcCceecceeeeeeccccc
Confidence 67889999999999999999988763 258899999999999999999999999988999998854
No 81
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.76 E-value=2.8e-08 Score=59.35 Aligned_cols=71 Identities=28% Similarity=0.417 Sum_probs=64.0
Q ss_pred CccccHHHHHHHHhccCCccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecCCC
Q 048030 2 SFSTTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPS 73 (93)
Q Consensus 2 ~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~ 73 (93)
.+.++.+++...|+.||.+..+.++.++..+..++|+|+.|.+.+.+..++. |++..+.|+.+.|.+.+..
T Consensus 110 d~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt~~r~~ 180 (231)
T KOG4209|consen 110 DFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVTLKRTN 180 (231)
T ss_pred ccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccceeeeeeee
Confidence 3456667799999999999999999999888999999999999999999999 9999999999999887755
No 82
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=98.75 E-value=2.8e-08 Score=63.42 Aligned_cols=65 Identities=43% Similarity=0.578 Sum_probs=58.2
Q ss_pred CCccccHHHHHHHHhccCCccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEec
Q 048030 1 VSFSTTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNV 70 (93)
Q Consensus 1 l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 70 (93)
||.+.||+.|+.-|..||.+....|+. .|+.+| -|.|.++++|+.|+..|++..+.|+.|.|.+.
T Consensus 544 lP~dfTWqmlrDKfre~G~v~yadime---~GkskG--VVrF~s~edAEra~a~Mngs~l~Gr~I~V~y~ 608 (608)
T KOG4212|consen 544 LPFDFTWQMLRDKFREIGHVLYADIME---NGKSKG--VVRFFSPEDAERACALMNGSRLDGRNIKVTYF 608 (608)
T ss_pred CCccccHHHHHHHHHhccceehhhhhc---cCCccc--eEEecCHHHHHHHHHHhccCcccCceeeeeeC
Confidence 799999999999999999998887732 577766 89999999999999999999999999999863
No 83
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=98.74 E-value=5.3e-08 Score=62.64 Aligned_cols=69 Identities=29% Similarity=0.445 Sum_probs=58.2
Q ss_pred CCccccHHHHHHHHhccCCccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecCCC
Q 048030 1 VSFSTTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPS 73 (93)
Q Consensus 1 l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~ 73 (93)
||++.|+++|..||+.++ |.++.+. +.+|+..|-|||+|.+.+++..|++ .+...++.|-|.|..+...
T Consensus 18 LPwsat~~ei~~Ff~~~~-I~~~~~~--r~~Gr~sGeA~Ve~~seedv~~Alk-kdR~~mg~RYIEVf~~~~~ 86 (510)
T KOG4211|consen 18 LPWSATEKEILDFFSNCG-IENLEIP--RRNGRPSGEAYVEFTSEEDVEKALK-KDRESMGHRYIEVFTAGGA 86 (510)
T ss_pred CCccccHHHHHHHHhcCc-eeEEEEe--ccCCCcCcceEEEeechHHHHHHHH-hhHHHhCCceEEEEccCCc
Confidence 899999999999999986 4444444 4479999999999999999999999 5777788888999877544
No 84
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=98.70 E-value=9.7e-08 Score=59.22 Aligned_cols=70 Identities=17% Similarity=0.339 Sum_probs=64.1
Q ss_pred CCccccHHHHHHHHhccCCccE--------EEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecC
Q 048030 1 VSFSTTKEMLADAFSQFGQVTE--------ATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVR 71 (93)
Q Consensus 1 l~~~~~~~~l~~~f~~~g~i~~--------~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 71 (93)
||.++|-+++.++|++||.|.. |++-++. .|+.+|=|++.|...+++.-|+..|++..+.|+.|+|+.++
T Consensus 142 LP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~-~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg~~~rVerAk 219 (382)
T KOG1548|consen 142 LPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDN-QGKLKGDALCCYIKRESVELAIKILDEDELRGKKLRVERAK 219 (382)
T ss_pred CCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecC-CCCccCceEEEeecccHHHHHHHHhCcccccCcEEEEehhh
Confidence 7999999999999999998753 6777776 59999999999999999999999999999999999999886
No 85
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=98.69 E-value=1.2e-07 Score=60.00 Aligned_cols=65 Identities=23% Similarity=0.375 Sum_probs=59.4
Q ss_pred ccccHHHHHHHHhccCCccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecCC
Q 048030 3 FSTTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRP 72 (93)
Q Consensus 3 ~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~ 72 (93)
..++.+.|-.+|+.||.+..++|+..+. .-|+|++.+...|+-|+..|+|..+.|++|+|.+++-
T Consensus 308 ~~VT~d~LftlFgvYGdVqRVkil~nkk-----d~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH 372 (492)
T KOG1190|consen 308 EAVTPDVLFTLFGVYGDVQRVKILYNKK-----DNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKH 372 (492)
T ss_pred hccchhHHHHHHhhhcceEEEEeeecCC-----cceeeeecchhHHHHHHHHhhcceecCceEEEeeccC
Confidence 4588999999999999999999998763 3699999999999999999999999999999999973
No 86
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.60 E-value=1.2e-06 Score=45.74 Aligned_cols=71 Identities=23% Similarity=0.324 Sum_probs=59.6
Q ss_pred CCccccHHHHHHHHhc--cCCccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeC----CeEEEEEecC
Q 048030 1 VSFSTTKEMLADAFSQ--FGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLD----GRVIFVDNVR 71 (93)
Q Consensus 1 l~~~~~~~~l~~~f~~--~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~----g~~l~v~~~~ 71 (93)
+|...+.+.|.+++.. .|....+.++.|..++.+.|||||.|.+.+.+......++|..+. .+...|.+|+
T Consensus 9 IPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i~yAr 85 (97)
T PF04059_consen 9 IPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEISYAR 85 (97)
T ss_pred CCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEEehhH
Confidence 5778889999988865 356667889999999999999999999999999999999999864 4556777765
No 87
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=98.57 E-value=1.3e-07 Score=61.49 Aligned_cols=72 Identities=31% Similarity=0.464 Sum_probs=64.4
Q ss_pred cccHHHHHHHHhccCCccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecCCCCCC
Q 048030 4 STTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRY 76 (93)
Q Consensus 4 ~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~~~ 76 (93)
..+..+|.++|+.+|.+..++++.++.++..+|.+||+|.+.+....|+. |.|..+.|-+|.|......++.
T Consensus 190 r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~aia-LsGqrllg~pv~vq~sEaeknr 261 (549)
T KOG0147|consen 190 RNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAIA-LSGQRLLGVPVIVQLSEAEKNR 261 (549)
T ss_pred cCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHhh-hcCCcccCceeEecccHHHHHH
Confidence 45678999999999999999999999999999999999999999999986 9999999999999887654443
No 88
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=98.56 E-value=1.1e-07 Score=61.98 Aligned_cols=73 Identities=18% Similarity=0.416 Sum_probs=67.8
Q ss_pred CCccccHHHHHHHHhccCCccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecCCC
Q 048030 1 VSFSTTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPS 73 (93)
Q Consensus 1 l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~ 73 (93)
||...++.++.+++..||.+....++.+..+|-++||||.+|.+......|+..|||..+++..|.|..+-..
T Consensus 297 lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A~~g 369 (500)
T KOG0120|consen 297 LPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRAIVG 369 (500)
T ss_pred CcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehhhcc
Confidence 5677899999999999999999999999988999999999999999999999999999999999999988544
No 89
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=98.55 E-value=3e-07 Score=59.25 Aligned_cols=69 Identities=28% Similarity=0.413 Sum_probs=57.1
Q ss_pred CCccccHHHHHHHHhccCCccE-EEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecC
Q 048030 1 VSFSTTKEMLADAFSQFGQVTE-ATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVR 71 (93)
Q Consensus 1 l~~~~~~~~l~~~f~~~g~i~~-~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 71 (93)
||+.++++||.+||+..-.+.. |.++.++ .++..|-|||+|++.+.|+.|+.. |...|+.+-|.|..+.
T Consensus 111 LPfscte~dI~~FFaGL~Iv~~gi~l~~d~-rgR~tGEAfVqF~sqe~ae~Al~r-hre~iGhRYIEvF~Ss 180 (510)
T KOG4211|consen 111 LPFSCTEEDIVEFFAGLEIVPDGILLPMDQ-RGRPTGEAFVQFESQESAEIALGR-HRENIGHRYIEVFRSS 180 (510)
T ss_pred CCccCcHHHHHHHhcCCcccccceeeeccC-CCCcccceEEEecCHHHHHHHHHH-HHHhhccceEEeehhH
Confidence 7999999999999998765544 5566665 677899999999999999999984 5667888888887764
No 90
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.23 E-value=1.7e-06 Score=51.08 Aligned_cols=66 Identities=26% Similarity=0.262 Sum_probs=57.2
Q ss_pred ccccHHHHHHHHhccCCccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEec
Q 048030 3 FSTTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNV 70 (93)
Q Consensus 3 ~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 70 (93)
..++++-|.++|-.-|.+..+.|..++ .++.+ ||||.|.++....-|+.-+||..+.+..+.|..-
T Consensus 19 ~~v~eelL~ElfiqaGPV~kv~ip~~~-d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~r 84 (267)
T KOG4454|consen 19 SGVSEELLSELFIQAGPVYKVGIPSGQ-DQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTLR 84 (267)
T ss_pred hhhhHHHHHHHhhccCceEEEeCCCCc-cCCCc-eeeeecccccchhhhhhhcccchhccchhhcccc
Confidence 468999999999999999999988776 55566 9999999999999999999999988887776654
No 91
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=98.21 E-value=1.3e-06 Score=53.75 Aligned_cols=77 Identities=27% Similarity=0.499 Sum_probs=68.2
Q ss_pred CCccccHHHHHHHHhccCCccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecCCCCCCCC
Q 048030 1 VSFSTTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNT 78 (93)
Q Consensus 1 l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~~~~~ 78 (93)
|+..+++++|+..|..+|.|..+++..++.++..++++|+.|........++.. +...+.++.+.+.+..+.+....
T Consensus 193 ~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 269 (285)
T KOG4210|consen 193 LDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND-QTRSIGGRPLRLEEDEPRPKSDG 269 (285)
T ss_pred cccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc-ccCcccCcccccccCCCCccccc
Confidence 567889999999999999999999999999999999999999999999999886 77889999999998887755433
No 92
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=98.20 E-value=2.2e-06 Score=53.48 Aligned_cols=74 Identities=26% Similarity=0.255 Sum_probs=65.9
Q ss_pred CCccccHHHHHHHHhccCCcc--------EEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecCC
Q 048030 1 VSFSTTKEMLADAFSQFGQVT--------EATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRP 72 (93)
Q Consensus 1 l~~~~~~~~l~~~f~~~g~i~--------~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~ 72 (93)
||..++++.|..+|..+|.|. .|.+-+++.++..++-|.|.|.+...|++|+..+++..+++..|+|..+..
T Consensus 74 ~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~gn~ikvs~a~~ 153 (351)
T KOG1995|consen 74 CPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFCGNTIKVSLAER 153 (351)
T ss_pred cCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccccCCCchhhhhhh
Confidence 577899999999999999774 356777888999999999999999999999999999999999999988876
Q ss_pred CC
Q 048030 73 SR 74 (93)
Q Consensus 73 ~~ 74 (93)
.+
T Consensus 154 r~ 155 (351)
T KOG1995|consen 154 RT 155 (351)
T ss_pred cc
Confidence 65
No 93
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=98.19 E-value=1.3e-05 Score=52.58 Aligned_cols=65 Identities=20% Similarity=0.353 Sum_probs=53.5
Q ss_pred HHHHHHHhccCCccEEEEeecCC---CCCcccEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecCC
Q 048030 8 EMLADAFSQFGQVTEATIIMDKG---KNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRP 72 (93)
Q Consensus 8 ~~l~~~f~~~g~i~~~~~~~~~~---~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~ 72 (93)
++++..+++||.|..|.+.+... ..-..|..||+|.+.+++++|+++|+|.++.++.+...|...
T Consensus 424 Edvr~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsYyde 491 (500)
T KOG0120|consen 424 EDVRTECAKFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASYYDE 491 (500)
T ss_pred HHHHHHhcccCceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEecCH
Confidence 56777888999999999887611 222346789999999999999999999999999998888653
No 94
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.16 E-value=9.7e-06 Score=53.56 Aligned_cols=62 Identities=31% Similarity=0.573 Sum_probs=52.7
Q ss_pred HHHHHHhccCCccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeC-CeEEEEEecC
Q 048030 9 MLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLD-GRVIFVDNVR 71 (93)
Q Consensus 9 ~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~-g~~l~v~~~~ 71 (93)
-|.++|+++|.+....++.+..+| .+||.|++|.+..+|..|++.|||..+. .+...|...+
T Consensus 80 vl~kvfsk~gk~vn~~~P~~e~gg-tkG~lf~E~~~~~~A~~aVK~l~G~~ldknHtf~v~~f~ 142 (698)
T KOG2314|consen 80 VLTKVFSKAGKIVNMYYPIDEEGG-TKGYLFVEYASMRDAKKAVKSLNGKRLDKNHTFFVRLFK 142 (698)
T ss_pred HHHHHHHhhccccceeeccCccCC-eeeEEEEEecChhhHHHHHHhcccceecccceEEeehhh
Confidence 467889999999999998887555 8999999999999999999999999875 6666665543
No 95
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=98.15 E-value=1.4e-05 Score=53.99 Aligned_cols=68 Identities=24% Similarity=0.402 Sum_probs=58.3
Q ss_pred CCccccHHHHHHHHhccCCccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEE
Q 048030 1 VSFSTTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVD 68 (93)
Q Consensus 1 l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 68 (93)
+|++++-+||.+||..|-.+..--+++....|+..|-|.|.|++.++|.+|...|++.+|..+.+.+.
T Consensus 875 ~Pf~v~l~dI~~FF~dY~~~p~sI~~r~nd~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~ 942 (944)
T KOG4307|consen 875 FPFDVTLEDIVEFFNDYEPDPNSIRIRRNDDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLR 942 (944)
T ss_pred CCccccHHHHHHHhcccccCCCceeEeecCCCCcccceeEeecCHHHHHhhhhccccCcccceeEEEE
Confidence 58899999999999999877543334444589999999999999999999999999999999988765
No 96
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.13 E-value=1.9e-05 Score=40.03 Aligned_cols=57 Identities=25% Similarity=0.281 Sum_probs=37.2
Q ss_pred HHHHHHhccC-CccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecCCCCC
Q 048030 9 MLADAFSQFG-QVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRR 75 (93)
Q Consensus 9 ~l~~~f~~~g-~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~~ 75 (93)
-|+.++..|| .+.++ + .+.|++.|.+.+.|.+|.++|+|-.+.|++|.|++....+.
T Consensus 22 RL~qLsdNCGGkVl~v-------~---~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~~~~~~r~ 79 (90)
T PF11608_consen 22 RLRQLSDNCGGKVLSV-------S---GGTAILRFPNQEFAERAQKRMEGEDVFGNKISVSFSPKNRE 79 (90)
T ss_dssp HHHHHHHTTT--EEE------------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEESS--S--
T ss_pred HHHHHhhccCCEEEEE-------e---CCEEEEEeCCHHHHHHHHHhhcccccccceEEEEEcCCccc
Confidence 4566666776 34444 1 24799999999999999999999999999999998754433
No 97
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=98.10 E-value=4.9e-05 Score=42.37 Aligned_cols=56 Identities=29% Similarity=0.493 Sum_probs=45.8
Q ss_pred HHHHHHHhccCCccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecCC
Q 048030 8 EMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRP 72 (93)
Q Consensus 8 ~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~ 72 (93)
.+|.+.|..||.+.-++++-+ .-.|+|.+...|.+|+. ++|.+++|+.|.|+...+
T Consensus 51 ~~ll~~~~~~GevvLvRfv~~--------~mwVTF~dg~sALaals-~dg~~v~g~~l~i~LKtp 106 (146)
T PF08952_consen 51 DELLQKFAQYGEVVLVRFVGD--------TMWVTFRDGQSALAALS-LDGIQVNGRTLKIRLKTP 106 (146)
T ss_dssp HHHHHHHHCCS-ECEEEEETT--------CEEEEESSCHHHHHHHH-GCCSEETTEEEEEEE---
T ss_pred HHHHHHHHhCCceEEEEEeCC--------eEEEEECccHHHHHHHc-cCCcEECCEEEEEEeCCc
Confidence 367888999999888888654 47899999999999999 899999999999987643
No 98
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=98.00 E-value=2.5e-05 Score=41.47 Aligned_cols=51 Identities=39% Similarity=0.540 Sum_probs=32.6
Q ss_pred CccccHHHHHHHHhccCCccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCC
Q 048030 2 SFSTTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGK 58 (93)
Q Consensus 2 ~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~ 58 (93)
+..++.++|+..|+.||.|..|.+..+. .-|||.|.+.+.|..|+..+...
T Consensus 10 ~~~~~re~iK~~f~~~g~V~yVD~~~G~------~~g~VRf~~~~~A~~a~~~~~~~ 60 (105)
T PF08777_consen 10 GEPTSREDIKEAFSQFGEVAYVDFSRGD------TEGYVRFKTPEAAQKALEKLKEA 60 (105)
T ss_dssp -SS--HHHHHHHT-SS--EEEEE--TT-------SEEEEEESS---HHHHHHHHHHT
T ss_pred CCCcCHHHHHHHHHhcCCcceEEecCCC------CEEEEEECCcchHHHHHHHHHhc
Confidence 4567899999999999999999886543 26899999999999999866544
No 99
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=97.98 E-value=9.6e-05 Score=46.34 Aligned_cols=67 Identities=27% Similarity=0.481 Sum_probs=55.9
Q ss_pred HHHHHHHHhccCCccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecCCCCCCC
Q 048030 7 KEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYN 77 (93)
Q Consensus 7 ~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~~~~ 77 (93)
.++|++-..+||.+..+.+.- ..+.|.+-|.|.+.++|..+|+.|+|.-+.||.|..+....+....
T Consensus 290 kedl~eec~K~G~v~~vvv~d----~hPdGvvtV~f~n~eeA~~ciq~m~GR~fdgRql~A~i~DG~t~~~ 356 (382)
T KOG1548|consen 290 KEDLTEECEKFGQVRKVVVYD----RHPDGVVTVSFRNNEEADQCIQTMDGRWFDGRQLTASIWDGKTKFQ 356 (382)
T ss_pred HHHHHHHHHHhCCcceEEEec----cCCCceeEEEeCChHHHHHHHHHhcCeeecceEEEEEEeCCcceee
Confidence 357788889999999987643 2356789999999999999999999999999999988877665543
No 100
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.87 E-value=6e-05 Score=35.14 Aligned_cols=39 Identities=26% Similarity=0.594 Sum_probs=32.4
Q ss_pred HHHHHHHhccCCccEEEEeecCCCCCcccEEEEEecCHHHHHHHH
Q 048030 8 EMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKAL 52 (93)
Q Consensus 8 ~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~ 52 (93)
+.+...|..||.|.++.+. ....+.|+.|.+..+|+.|+
T Consensus 15 ~~vl~~F~~fGeI~~~~~~------~~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 15 EEVLEHFASFGEIVDIYVP------ESTNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred HHHHHHHHhcCCEEEEEcC------CCCcEEEEEECCHHHHHhhC
Confidence 5677899999999998874 23358999999999999885
No 101
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=97.85 E-value=5.5e-05 Score=45.01 Aligned_cols=57 Identities=19% Similarity=0.291 Sum_probs=45.2
Q ss_pred CCccccHHHHHHHHhccCCccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeC
Q 048030 1 VSFSTTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLD 61 (93)
Q Consensus 1 l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~ 61 (93)
|..+++|++|+.+|+.|..-..++|... .| ...||++|++.+.|..|+..|+|..+.
T Consensus 218 l~~~~~ed~l~~~~~~~~gf~~l~~~~~--~g--~~vaf~~~~~~~~at~am~~lqg~~~s 274 (284)
T KOG1457|consen 218 LGPNCTEDELKQLLSRYPGFHILKIRAR--GG--MPVAFADFEEIEQATDAMNHLQGNLLS 274 (284)
T ss_pred cCCCCCHHHHHHHHHhCCCceEEEEecC--CC--cceEeecHHHHHHHHHHHHHhhcceec
Confidence 4578999999999999976555555322 22 358999999999999999999998764
No 102
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=97.84 E-value=1.3e-05 Score=47.47 Aligned_cols=61 Identities=33% Similarity=0.561 Sum_probs=51.1
Q ss_pred ccccHHHHHHHHhccCCccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecC
Q 048030 3 FSTTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVR 71 (93)
Q Consensus 3 ~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 71 (93)
..+.+.+|...|..+|.+....+ ..+++||.|...+++..|+..|++..+.++.|.+...-
T Consensus 109 ~r~~~qdl~d~~~~~g~~~~~~~--------~~~~~~v~Fs~~~da~ra~~~l~~~~~~~~~l~~~~~~ 169 (216)
T KOG0106|consen 109 LRVSWQDLKDHFRPAGEVTYVDA--------RRNFAFVEFSEQEDAKRALEKLDGKKLNGRRISVEKNS 169 (216)
T ss_pred hhhhHHHHhhhhcccCCCchhhh--------hccccceeehhhhhhhhcchhccchhhcCceeeecccC
Confidence 45678999999999999844332 34689999999999999999999999999999985543
No 103
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=97.82 E-value=0.00014 Score=43.00 Aligned_cols=66 Identities=23% Similarity=0.407 Sum_probs=55.7
Q ss_pred CCccccHHHHHHHHhccCCccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeC-CeEEEEEecC
Q 048030 1 VSFSTTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLD-GRVIFVDNVR 71 (93)
Q Consensus 1 l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~-g~~l~v~~~~ 71 (93)
||.+++.+.+..+|..|..-.+++++... .+.|||+|.+...+..|...+++..|. ...+.|.+++
T Consensus 154 iP~es~~e~l~~lf~qf~g~keir~i~~~-----~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~~a~ 220 (221)
T KOG4206|consen 154 IPSESESEMLSDLFEQFPGFKEIRLIPPR-----SGIAFVEFLSDRQASAAQQALQGFKITKKNTMQITFAK 220 (221)
T ss_pred CCcchhHHHHHHHHhhCcccceeEeccCC-----CceeEEecchhhhhHHHhhhhccceeccCceEEecccC
Confidence 57788899999999999988888876542 368999999999999999999999876 7788887664
No 104
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.75 E-value=0.00012 Score=46.09 Aligned_cols=62 Identities=29% Similarity=0.532 Sum_probs=46.7
Q ss_pred HHHHhccCCccEEEEeecC-CCCCccc--EEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecCC
Q 048030 11 ADAFSQFGQVTEATIIMDK-GKNRSKG--YGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRP 72 (93)
Q Consensus 11 ~~~f~~~g~i~~~~~~~~~-~~~~~~g--~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~ 72 (93)
.++|..||.|..|-+-+.- ......+ -.||+|.+.++|.+++...+|..++|+-|+..+...
T Consensus 138 ~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr~lkatYGTT 202 (480)
T COG5175 138 HEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGRVLKATYGTT 202 (480)
T ss_pred hhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCceEeeecCch
Confidence 5789999999887653321 0111112 249999999999999999999999999999887653
No 105
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.71 E-value=0.00049 Score=36.22 Aligned_cols=65 Identities=22% Similarity=0.351 Sum_probs=44.7
Q ss_pred cHHHHHHHHhccCCccEEE-EeecC------CCCCcccEEEEEecCHHHHHHHHHHhCCCeeCCe-EEEEEecC
Q 048030 6 TKEMLADAFSQFGQVTEAT-IIMDK------GKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGR-VIFVDNVR 71 (93)
Q Consensus 6 ~~~~l~~~f~~~g~i~~~~-~~~~~------~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~-~l~v~~~~ 71 (93)
....+.+.|++||.|.+.. +..+. .......+..|.|.++.+|.+||. .||..+.|. -+.|.+++
T Consensus 18 ~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~-~NG~i~~g~~mvGV~~~~ 90 (100)
T PF05172_consen 18 ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQ-KNGTIFSGSLMVGVKPCD 90 (100)
T ss_dssp GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHT-TTTEEETTCEEEEEEE-H
T ss_pred HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHH-hCCeEEcCcEEEEEEEcH
Confidence 4567889999999997764 10000 011234699999999999999999 599999875 45677764
No 106
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=97.63 E-value=0.0004 Score=35.23 Aligned_cols=49 Identities=18% Similarity=0.313 Sum_probs=37.5
Q ss_pred CCccccHHHHHHHHhccCCccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCC
Q 048030 1 VSFSTTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNG 57 (93)
Q Consensus 1 l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~ 57 (93)
.|.++...||.++|+.||.| .|.++-+- -|||...+.+.+..++..+..
T Consensus 16 FPkeWK~~DI~qlFspfG~I-~VsWi~dT-------SAfV~l~~r~~~~~v~~~~~~ 64 (87)
T PF08675_consen 16 FPKEWKTSDIYQLFSPFGQI-YVSWINDT-------SAFVALHNRDQAKVVMNTLKK 64 (87)
T ss_dssp --TT--HHHHHHHCCCCCCE-EEEEECTT-------EEEEEECCCHHHHHHHHHHTT
T ss_pred CchHhhhhhHHHHhccCCcE-EEEEEcCC-------cEEEEeecHHHHHHHHHHhcc
Confidence 36788889999999999987 55555542 599999999999999988754
No 107
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=97.59 E-value=0.00029 Score=45.28 Aligned_cols=68 Identities=21% Similarity=0.279 Sum_probs=55.3
Q ss_pred CCccccHHHHHHHHhccCCccEE-EEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeCC-eEEEEEecCCC
Q 048030 1 VSFSTTKEMLADAFSQFGQVTEA-TIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDG-RVIFVDNVRPS 73 (93)
Q Consensus 1 l~~~~~~~~l~~~f~~~g~i~~~-~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g-~~l~v~~~~~~ 73 (93)
+|++++|++++..|..-|..... ++ -++.+.++++.+.+.++|..|+..++...+++ .-++|+++++.
T Consensus 422 ip~svsee~lk~~f~~~g~~vkafkf-----f~kd~kmal~q~~sveeA~~ali~~hnh~lgen~hlRvSFSks~ 491 (492)
T KOG1190|consen 422 IPPSVSEEDLKNLFQEPGGQVKAFKF-----FQKDRKMALPQLESVEEAIQALIDLHNHYLGENHHLRVSFSKST 491 (492)
T ss_pred CCcccchhHHHHhhhcCCceEEeeee-----cCCCcceeecccCChhHhhhhccccccccCCCCceEEEEeeccc
Confidence 57899999999999987765433 33 34455699999999999999999999999874 47899998753
No 108
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=97.55 E-value=0.00022 Score=49.57 Aligned_cols=73 Identities=25% Similarity=0.368 Sum_probs=58.8
Q ss_pred CCccccHHHHHHHHhccCCccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeCC--eEEEEEecCCCCCCCC
Q 048030 1 VSFSTTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDG--RVIFVDNVRPSRRYNT 78 (93)
Q Consensus 1 l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g--~~l~v~~~~~~~~~~~ 78 (93)
|..+.....+...|..||.|..|.+-. ...|+||.|.+...++.|++.|.+..+++ +++.|.++........
T Consensus 463 lg~w~p~~~l~r~fd~fGpir~Idy~h------gq~yayi~yes~~~aq~a~~~~rgap~G~P~~r~rvdla~~~~~~Pq 536 (975)
T KOG0112|consen 463 LGPWSPVSRLNREFDRFGPIRIIDYRH------GQPYAYIQYESPPAAQAATHDMRGAPLGGPPRRLRVDLASPPGATPQ 536 (975)
T ss_pred CCCCChHHHHHHHhhccCcceeeeccc------CCcceeeecccCccchhhHHHHhcCcCCCCCcccccccccCCCCChh
Confidence 345677788999999999999987632 23599999999999999999999999985 6788888876655444
Q ss_pred C
Q 048030 79 D 79 (93)
Q Consensus 79 ~ 79 (93)
.
T Consensus 537 q 537 (975)
T KOG0112|consen 537 Q 537 (975)
T ss_pred h
Confidence 3
No 109
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=97.50 E-value=0.00014 Score=46.41 Aligned_cols=70 Identities=20% Similarity=0.357 Sum_probs=57.3
Q ss_pred CCccccHHHHHHHHhccCC-ccE--EEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecC
Q 048030 1 VSFSTTKEMLADAFSQFGQ-VTE--ATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVR 71 (93)
Q Consensus 1 l~~~~~~~~l~~~f~~~g~-i~~--~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 71 (93)
||++.+-++|..+|..|.. |.. +.++.+. .|...|-|||+|.+.++|..|...-++.....|-|.|..+.
T Consensus 288 LPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N~-qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvfp~S 360 (508)
T KOG1365|consen 288 LPYEATVEDILDFLGDFATDIRFQGVHMVLNG-QGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVFPCS 360 (508)
T ss_pred CChhhhHHHHHHHHHHHhhhcccceeEEEEcC-CCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEeecc
Confidence 7899999999999999864 333 5565553 78888999999999999999988777777778888887765
No 110
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=97.49 E-value=8.3e-05 Score=47.93 Aligned_cols=80 Identities=20% Similarity=0.329 Sum_probs=60.2
Q ss_pred CCccccHHHHHHHHhccCCccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCe-eCCeEEEEEecCCCCCCCCC
Q 048030 1 VSFSTTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKL-LDGRVIFVDNVRPSRRYNTD 79 (93)
Q Consensus 1 l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~-~~g~~l~v~~~~~~~~~~~~ 79 (93)
|.+.++..+++.+|...-.-..-.++. ..||+|+++.+..++.+|++.+++.. +.|.++.+..+-++..+.+.
T Consensus 9 L~p~~~psdl~svfg~ak~~~~g~fl~------k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~kkqrsrk 82 (584)
T KOG2193|consen 9 LSPQVTPSDLESVFGDAKIPGSGQFLV------KSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVPKKQRSRK 82 (584)
T ss_pred cCCCCChHHHHHHhccccCCCCcceee------ecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhhHHHHhhh
Confidence 567788999999997652222222322 23799999999999999999999976 88999999999888777766
Q ss_pred CcccCCC
Q 048030 80 APLARQL 86 (93)
Q Consensus 80 ~~~~~~~ 86 (93)
.+....+
T Consensus 83 ~Qirnip 89 (584)
T KOG2193|consen 83 IQIRNIP 89 (584)
T ss_pred hhHhcCC
Confidence 5554443
No 111
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=97.46 E-value=0.0011 Score=42.38 Aligned_cols=64 Identities=19% Similarity=0.266 Sum_probs=55.9
Q ss_pred ccHHHHHHHHhccCCccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecCCC
Q 048030 5 TTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPS 73 (93)
Q Consensus 5 ~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~ 73 (93)
++-+-|-.+|--||.+..|++++.+ .|-|.|+..+....++|+..||+..+-|.+|.|..++..
T Consensus 300 ~N~drlFNl~ClYGNV~rvkFmkTk-----~gtamVemgd~~aver~v~hLnn~~lfG~kl~v~~SkQ~ 363 (494)
T KOG1456|consen 300 MNCDRLFNLFCLYGNVERVKFMKTK-----PGTAMVEMGDAYAVERAVTHLNNIPLFGGKLNVCVSKQN 363 (494)
T ss_pred cchhhhhhhhhhcCceeeEEEeecc-----cceeEEEcCcHHHHHHHHHHhccCccccceEEEeecccc
Confidence 4567788899999999999998765 356999999999999999999999999999999988744
No 112
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=97.45 E-value=0.00016 Score=45.67 Aligned_cols=65 Identities=18% Similarity=0.364 Sum_probs=55.8
Q ss_pred CCccccHHHHHHHHhccC--CccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeCCeEE
Q 048030 1 VSFSTTKEMLADAFSQFG--QVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVI 65 (93)
Q Consensus 1 l~~~~~~~~l~~~f~~~g--~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l 65 (93)
|-|+++++||.+.+...| .+.++++..++.+|.++|||++...+.......++.|....|+|..-
T Consensus 88 L~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P 154 (498)
T KOG4849|consen 88 LLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSP 154 (498)
T ss_pred eeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCC
Confidence 447889999999998877 57788999999999999999999999999999999888888887643
No 113
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=97.28 E-value=0.0019 Score=41.36 Aligned_cols=65 Identities=25% Similarity=0.341 Sum_probs=52.8
Q ss_pred cccHHHHHHHHhccCCccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeC-C-eEEEEEecCCC
Q 048030 4 STTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLD-G-RVIFVDNVRPS 73 (93)
Q Consensus 4 ~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~-g-~~l~v~~~~~~ 73 (93)
.++-+-|..+....|.+..|-|.+. +|. .|.|+|.+.+.|++|...|||..|. | -.|+|+++++.
T Consensus 133 pItvDVly~Icnp~GkVlRIvIfkk--ngV---QAmVEFdsv~~AqrAk~alNGADIYsGCCTLKIeyAkP~ 199 (494)
T KOG1456|consen 133 PITVDVLYTICNPQGKVLRIVIFKK--NGV---QAMVEFDSVEVAQRAKAALNGADIYSGCCTLKIEYAKPT 199 (494)
T ss_pred ccchhhhhhhcCCCCceEEEEEEec--cce---eeEEeechhHHHHHHHhhcccccccccceeEEEEecCcc
Confidence 3566677788888999999877664 444 5899999999999999999999975 3 47899998865
No 114
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=97.24 E-value=0.0029 Score=39.32 Aligned_cols=64 Identities=23% Similarity=0.345 Sum_probs=49.7
Q ss_pred HHHHHHHHhccCCccEEEEeecCCCCCc-ccEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEec
Q 048030 7 KEMLADAFSQFGQVTEATIIMDKGKNRS-KGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNV 70 (93)
Q Consensus 7 ~~~l~~~f~~~g~i~~~~~~~~~~~~~~-~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 70 (93)
++++.+...+||.+..|-|...+..-.. .-.-||+|...+.|.+|+-.|||..++|+.+...+.
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fy 364 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFY 364 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheec
Confidence 4577888999999988877655432222 224699999999999999999999999998766543
No 115
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=97.23 E-value=0.00027 Score=42.68 Aligned_cols=63 Identities=27% Similarity=0.459 Sum_probs=48.3
Q ss_pred HHHHHHHh-ccCCccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecC
Q 048030 8 EMLADAFS-QFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVR 71 (93)
Q Consensus 8 ~~l~~~f~-~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 71 (93)
+++...|+ +||.|.++.+-.+ ..-...|=+||.|...++|++|+..||+.-+.|++|....+.
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~N-l~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~p 146 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDN-LGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSP 146 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcc-cchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecC
Confidence 35555566 8999987744222 123345668999999999999999999999999999988765
No 116
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=97.17 E-value=0.0023 Score=41.09 Aligned_cols=65 Identities=25% Similarity=0.364 Sum_probs=48.5
Q ss_pred CCccccHHHHHHHHhc-c---CCccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeCCeEEEE
Q 048030 1 VSFSTTKEMLADAFSQ-F---GQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 67 (93)
Q Consensus 1 l~~~~~~~~l~~~f~~-~---g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v 67 (93)
||++.++.++.++|.. + |....+.++..+ .|+..|-||+.|..+++|+.|+.. |...++.|-|.+
T Consensus 169 LPfdat~~dVv~FF~~~cpv~~g~egvLFV~rp-dgrpTGdAFvlfa~ee~aq~aL~k-hrq~iGqRYIEl 237 (508)
T KOG1365|consen 169 LPFDATALDVVEFFGPPCPVTGGTEGVLFVTRP-DGRPTGDAFVLFACEEDAQFALRK-HRQNIGQRYIEL 237 (508)
T ss_pred CCCCcchHHHHHhcCCCCcccCCccceEEEECC-CCCcccceEEEecCHHHHHHHHHH-HHHHHhHHHHHH
Confidence 7999999999999963 2 234455555554 788999999999999999999984 444455444443
No 117
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=97.10 E-value=0.0026 Score=37.09 Aligned_cols=53 Identities=23% Similarity=0.325 Sum_probs=47.3
Q ss_pred CCccccHHHHHHHHhccCCccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCee
Q 048030 1 VSFSTTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLL 60 (93)
Q Consensus 1 l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~ 60 (93)
||++.+|++|+....+-|.++...+.++ +.+.|+|...++..-|+..|....+
T Consensus 123 Lp~SgSWQDLKDHmReaGdvCfadv~rD-------g~GvV~~~r~eDMkYAvr~ld~~~~ 175 (241)
T KOG0105|consen 123 LPPSGSWQDLKDHMREAGDVCFADVQRD-------GVGVVEYLRKEDMKYAVRKLDDQKF 175 (241)
T ss_pred CCCCCchHHHHHHHHhhCCeeeeeeecc-------cceeeeeeehhhHHHHHHhhccccc
Confidence 7899999999999999999999888766 3789999999999999998887764
No 118
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=97.09 E-value=0.0054 Score=35.77 Aligned_cols=63 Identities=21% Similarity=0.239 Sum_probs=45.6
Q ss_pred cHHHHHHHHhccCCccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhC--CCeeCCeEEEEEecCCCC
Q 048030 6 TKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMN--GKLLDGRVIFVDNVRPSR 74 (93)
Q Consensus 6 ~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~--~~~~~g~~l~v~~~~~~~ 74 (93)
....|+.+|..++.+.....+... +...|.|.+.+.|.+|...|+ +..+.|..+++.++....
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~sF------rRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~~ 72 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKSF------RRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPTP 72 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETTT------TEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----SS
T ss_pred hHHHHHHHHHhcCCceEEEEcCCC------CEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEccccc
Confidence 346899999999998887766543 357899999999999999999 889999999999885443
No 119
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=96.99 E-value=0.0083 Score=28.85 Aligned_cols=45 Identities=24% Similarity=0.298 Sum_probs=36.0
Q ss_pred cccHHHHHHHHhcc---CCccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHh
Q 048030 4 STTKEMLADAFSQF---GQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADM 55 (93)
Q Consensus 4 ~~~~~~l~~~f~~~---g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l 55 (93)
+++.++|+.+|..| .....+.++-|. -|-|.|.+...|.+||..|
T Consensus 15 ~lsT~dI~~y~~~y~~~~~~~~IEWIdDt-------ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 15 ELSTDDIKAYFSEYFDEEGPFRIEWIDDT-------SCNVVFKDEETAARALVAL 62 (62)
T ss_pred CCCHHHHHHHHHHhcccCCCceEEEecCC-------cEEEEECCHHHHHHHHHcC
Confidence 57889999999998 134577777764 4789999999999998754
No 120
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=96.97 E-value=0.0016 Score=42.61 Aligned_cols=62 Identities=32% Similarity=0.372 Sum_probs=51.1
Q ss_pred cHHHHHHHHhccCCccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecCCCC
Q 048030 6 TKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSR 74 (93)
Q Consensus 6 ~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~ 74 (93)
+-.+|...|+.||.|..|++-.. .-.|.|+|.+..+|..|-. .++..|.++.|+|.|-.+..
T Consensus 386 t~a~ln~hfA~fG~i~n~qv~~~------~~~a~vTF~t~aeag~a~~-s~~avlnnr~iKl~whnps~ 447 (526)
T KOG2135|consen 386 TIADLNPHFAQFGEIENIQVDYS------SLHAVVTFKTRAEAGEAYA-SHGAVLNNRFIKLFWHNPSP 447 (526)
T ss_pred hHhhhhhhhhhcCccccccccCc------hhhheeeeeccccccchhc-cccceecCceeEEEEecCCc
Confidence 34688999999999999987433 2368999999999977766 58899999999999988754
No 121
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=96.95 E-value=0.00089 Score=40.60 Aligned_cols=64 Identities=17% Similarity=0.273 Sum_probs=50.6
Q ss_pred CCccccHHHHHHHHhccCCccEEEEeecCCC--------CCccc----EEEEEecCHHHHHHHHHHhCCCeeCCeE
Q 048030 1 VSFSTTKEMLADAFSQFGQVTEATIIMDKGK--------NRSKG----YGYVTFSTEEEAQKALADMNGKLLDGRV 64 (93)
Q Consensus 1 l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~--------~~~~g----~~fv~f~~~~~a~~a~~~l~~~~~~g~~ 64 (93)
+|+.++..-|+++|+.||.|-.|.+.....+ |..+. -+.|+|.+...|......||+.+|+|++
T Consensus 82 IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~Iggkk 157 (278)
T KOG3152|consen 82 IPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTPIGGKK 157 (278)
T ss_pred CCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCccCCCC
Confidence 5899999999999999999988876543323 22222 3457899999999999999999999874
No 122
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=96.77 E-value=0.011 Score=33.17 Aligned_cols=55 Identities=18% Similarity=0.239 Sum_probs=41.6
Q ss_pred HHHHHHHhccCCccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEec
Q 048030 8 EMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNV 70 (93)
Q Consensus 8 ~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 70 (93)
..+...++.||.|.++.. .| +.-|.|.|.+...|=.|+.+++. ...|..+.+.|-
T Consensus 105 ~sV~~~Ls~fGpI~SVT~-----cG--rqsavVvF~d~~SAC~Av~Af~s-~~pgtm~qCsWq 159 (166)
T PF15023_consen 105 KSVIQRLSVFGPIQSVTL-----CG--RQSAVVVFKDITSACKAVSAFQS-RAPGTMFQCSWQ 159 (166)
T ss_pred HHHHHHHHhcCCcceeee-----cC--CceEEEEehhhHHHHHHHHhhcC-CCCCceEEeecc
Confidence 456667889999999865 22 34689999999999999988865 556667777663
No 123
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=96.60 E-value=0.0047 Score=39.77 Aligned_cols=69 Identities=19% Similarity=0.278 Sum_probs=51.2
Q ss_pred CCccccHHHHHHHHhccCCccEEEEeec---CCCCCcccEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEec
Q 048030 1 VSFSTTKEMLADAFSQFGQVTEATIIMD---KGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNV 70 (93)
Q Consensus 1 l~~~~~~~~l~~~f~~~g~i~~~~~~~~---~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 70 (93)
|.+.++.++++.+|...|.|.++.+.-. ..--.....|||-|.+...+..|.+ |-+.++-++.|.|...
T Consensus 15 ispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQh-Ltntvfvdraliv~p~ 86 (479)
T KOG4676|consen 15 ISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQH-LTNTVFVDRALIVRPY 86 (479)
T ss_pred cCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhh-hccceeeeeeEEEEec
Confidence 4577889999999999999998876432 1122334689999999999888877 6777766666655544
No 124
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=96.46 E-value=0.0003 Score=48.60 Aligned_cols=67 Identities=25% Similarity=0.368 Sum_probs=51.7
Q ss_pred CCccccHHHHHHHHhccCCccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeCCeEEEE
Q 048030 1 VSFSTTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 67 (93)
Q Consensus 1 l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v 67 (93)
|+..+.+.+|...|..+|.+..+++......++.+|.||+.|...+++.+|+....+..++...+.|
T Consensus 675 l~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~gK~~v~i 741 (881)
T KOG0128|consen 675 LSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFFGKISVAI 741 (881)
T ss_pred cchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhhhhhhhhe
Confidence 4566788899999999998887776655567889999999999999999999866555444333333
No 125
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=96.45 E-value=0.05 Score=29.21 Aligned_cols=56 Identities=21% Similarity=0.297 Sum_probs=41.2
Q ss_pred cccHHHHHHHHhccC-CccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeC
Q 048030 4 STTKEMLADAFSQFG-QVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLD 61 (93)
Q Consensus 4 ~~~~~~l~~~f~~~g-~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~ 61 (93)
.++.++|..+.+.+- .|..++++++. .-.+-.+.+.|.+...|......+||..+.
T Consensus 24 ~~~~d~l~~f~~~~~~~i~~~riird~--~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fn 80 (110)
T PF07576_consen 24 MTPSDFLLFFGAPFREDIEHIRIIRDG--TPNRYMVLIKFRDQESADEFYEEFNGKPFN 80 (110)
T ss_pred cccHHHHHHhhhcccccEEEEEEeeCC--CCceEEEEEEECCHHHHHHHHHHhCCCccC
Confidence 344455665555553 56678888874 235567889999999999999999999764
No 126
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=96.35 E-value=0.0041 Score=43.36 Aligned_cols=69 Identities=25% Similarity=0.252 Sum_probs=54.5
Q ss_pred CCccccHHHHHHHHhccCCccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEec
Q 048030 1 VSFSTTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNV 70 (93)
Q Consensus 1 l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 70 (93)
+|+..+.+.++.++..+|...+..++..+ .|+.+|-+|+.|.+..++...+.......+.-..+.|..+
T Consensus 744 ~pf~gt~e~~k~l~~~~gn~~~~~~vt~r-~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~~~~v~vs 812 (881)
T KOG0128|consen 744 PPFQGTKEELKSLASKTGNVTSLRLVTVR-AGKPKGKARVDYNTEADASRKVASVDVAGKRENNGEVQVS 812 (881)
T ss_pred CCCCCchHHHHhhccccCCccccchhhhh-ccccccceeccCCCcchhhhhcccchhhhhhhcCcccccc
Confidence 36778889999999999999998877766 7999999999999999988887766555554444444443
No 127
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=96.27 E-value=0.048 Score=26.98 Aligned_cols=58 Identities=22% Similarity=0.375 Sum_probs=33.5
Q ss_pred cccHHHHHHHHhccCCcc-----EEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEec
Q 048030 4 STTKEMLADAFSQFGQVT-----EATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNV 70 (93)
Q Consensus 4 ~~~~~~l~~~f~~~g~i~-----~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 70 (93)
.++..+|..++...+.+. .+++.. .|+|++... +.+..++..|++..+.|+++.|+.+
T Consensus 12 g~~~~~iv~~i~~~~gi~~~~IG~I~I~~--------~~S~vev~~-~~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 12 GLTPRDIVGAICNEAGIPGRDIGRIDIFD--------NFSFVEVPE-EVAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp T--HHHHHHHHHTCTTB-GGGEEEEEE-S--------S-EEEEE-T-T-HHHHHHHHTT--SSS----EEE-
T ss_pred CCCHHHHHHHHHhccCCCHHhEEEEEEee--------eEEEEEECH-HHHHHHHHHhcCCCCCCeeEEEEEC
Confidence 466778888888765443 455522 388998864 5888999999999999999999864
No 128
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=96.21 E-value=0.0038 Score=40.54 Aligned_cols=58 Identities=21% Similarity=0.274 Sum_probs=43.6
Q ss_pred CCccccHHHHHHHHhccCCccEEEEeec---CCC--CC--------cccEEEEEecCHHHHHHHHHHhCCC
Q 048030 1 VSFSTTKEMLADAFSQFGQVTEATIIMD---KGK--NR--------SKGYGYVTFSTEEEAQKALADMNGK 58 (93)
Q Consensus 1 l~~~~~~~~l~~~f~~~g~i~~~~~~~~---~~~--~~--------~~g~~fv~f~~~~~a~~a~~~l~~~ 58 (93)
||.+-.-+.|.++|+.+|.|..|+|..- +.+ +- .+-||+|+|...+.|.+|.+.|+..
T Consensus 239 LP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~~e 309 (484)
T KOG1855|consen 239 LPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLNPE 309 (484)
T ss_pred CCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhchh
Confidence 4555556789999999999999988654 111 11 1468999999999999999977443
No 129
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=96.15 E-value=0.008 Score=40.63 Aligned_cols=61 Identities=30% Similarity=0.341 Sum_probs=46.9
Q ss_pred ccHHHHHHHHhc-cCCccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCee---CCeEEEEEecC
Q 048030 5 TTKEMLADAFSQ-FGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLL---DGRVIFVDNVR 71 (93)
Q Consensus 5 ~~~~~l~~~f~~-~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~---~g~~l~v~~~~ 71 (93)
.|..+|+.++.. +|.|.+. .+|+ .+..|||.|.+.++|.+...+|||..+ +.+.|.+.|..
T Consensus 456 FTlgQLkelL~rtgg~Vee~--WmDk----IKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L~adf~~ 520 (718)
T KOG2416|consen 456 FTLGQLKELLGRTGGNVEEF--WMDK----IKSHCYVSYSSVEEAAATREALHNVQWPPSNPKHLIADFVR 520 (718)
T ss_pred chHHHHHHHHhhccCchHHH--HHHH----hhcceeEecccHHHHHHHHHHHhccccCCCCCceeEeeecc
Confidence 467889999995 5555555 2232 456899999999999999999999985 46678887765
No 130
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=95.84 E-value=0.031 Score=37.20 Aligned_cols=53 Identities=26% Similarity=0.517 Sum_probs=37.9
Q ss_pred CCccccHHHHHHHHhccCCccEEEEeec---CCCCCccc---EEEEEecCHHHHHHHHHH
Q 048030 1 VSFSTTKEMLADAFSQFGQVTEATIIMD---KGKNRSKG---YGYVTFSTEEEAQKALAD 54 (93)
Q Consensus 1 l~~~~~~~~l~~~f~~~g~i~~~~~~~~---~~~~~~~g---~~fv~f~~~~~a~~a~~~ 54 (93)
||++++|+.|...|..||.+. +.++.. ...--.+| |+|+.|+++..+..-+.+
T Consensus 267 lp~dise~~i~~~F~~FGs~~-VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~a 325 (520)
T KOG0129|consen 267 LPWDITEAQINASFGQFGSVK-VDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSA 325 (520)
T ss_pred CCccccHHHHHhhcccccceE-eecCCCccccccCCCCCcccEEEEEecchHHHHHHHHH
Confidence 799999999999999999763 333311 11112345 999999999888776553
No 131
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=95.72 E-value=0.0059 Score=42.04 Aligned_cols=69 Identities=14% Similarity=0.100 Sum_probs=54.4
Q ss_pred CCccccHHHHHHHHhccCCccE-EEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEec
Q 048030 1 VSFSTTKEMLADAFSQFGQVTE-ATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNV 70 (93)
Q Consensus 1 l~~~~~~~~l~~~f~~~g~i~~-~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 70 (93)
||..+.+.++..+|...-.+.+ |.+.+.+ +++.++.|||.|...+.+..|...-+...++.+.|+|.-.
T Consensus 442 lP~~t~~~~~v~~f~~~~~Ved~I~lt~~P-~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~si 511 (944)
T KOG4307|consen 442 LPVMTPIVPPVNKFMGAAAVEDFIELTRLP-TDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVDSI 511 (944)
T ss_pred CCccccccchhhhhhhhhhhhheeEeccCC-cccccchhhheeccccccchhhhcccccccCceEEEeech
Confidence 6788888999999988766655 6666655 7888999999999988888887766666677788888654
No 132
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=95.52 E-value=0.059 Score=33.80 Aligned_cols=56 Identities=30% Similarity=0.481 Sum_probs=42.2
Q ss_pred HHHHHHHhccCCccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeCCeE-EEEEec
Q 048030 8 EMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRV-IFVDNV 70 (93)
Q Consensus 8 ~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~-l~v~~~ 70 (93)
.-|..+|++||.|...... ..-.|-+|.|.+..+|++||. .+|..|.|.. |.|..+
T Consensus 211 s~vL~~F~~cG~Vvkhv~~------~ngNwMhirYssr~~A~KALs-kng~ii~g~vmiGVkpC 267 (350)
T KOG4285|consen 211 SIVLNLFSRCGEVVKHVTP------SNGNWMHIRYSSRTHAQKALS-KNGTIIDGDVMIGVKPC 267 (350)
T ss_pred hHHHHHHHhhCeeeeeecC------CCCceEEEEecchhHHHHhhh-hcCeeeccceEEeeeec
Confidence 4567889999998766432 233599999999999999998 5888887653 456554
No 133
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=95.48 E-value=0.018 Score=33.36 Aligned_cols=72 Identities=13% Similarity=0.064 Sum_probs=44.3
Q ss_pred CCccccHHHHHHHHhc-cCCc---cEEE--EeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeCC-----eEEEEEe
Q 048030 1 VSFSTTKEMLADAFSQ-FGQV---TEAT--IIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDG-----RVIFVDN 69 (93)
Q Consensus 1 l~~~~~~~~l~~~f~~-~g~i---~~~~--~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g-----~~l~v~~ 69 (93)
||+.++++++...+.. ++.. ..+. .............|||.|.+.+++......++|..+.+ ....|++
T Consensus 15 LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~kg~~~~~~VE~ 94 (176)
T PF03467_consen 15 LPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSKGNEYPAVVEF 94 (176)
T ss_dssp E-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TTS-EEEEEEEE
T ss_pred CCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCCCCCcceeEEE
Confidence 7999999998887766 5554 2332 11111122234679999999999999999999987532 3456776
Q ss_pred cCC
Q 048030 70 VRP 72 (93)
Q Consensus 70 ~~~ 72 (93)
+--
T Consensus 95 Apy 97 (176)
T PF03467_consen 95 APY 97 (176)
T ss_dssp -SS
T ss_pred cch
Confidence 643
No 134
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=94.81 E-value=0.012 Score=37.03 Aligned_cols=61 Identities=23% Similarity=0.418 Sum_probs=43.9
Q ss_pred HHHhccCCccEEEEeecCC---CCCcccEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecCC
Q 048030 12 DAFSQFGQVTEATIIMDKG---KNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRP 72 (93)
Q Consensus 12 ~~f~~~g~i~~~~~~~~~~---~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~ 72 (93)
+.|..||.|..+..-.+.. ......-+||+|...++|..+|...+|....|+.++..+...
T Consensus 99 eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lka~~gtt 162 (327)
T KOG2068|consen 99 EYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALKASLGTT 162 (327)
T ss_pred ccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhHHhhCCC
Confidence 3577888888876655441 111123479999999999999999999998888766655443
No 135
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=94.51 E-value=0.21 Score=33.03 Aligned_cols=59 Identities=20% Similarity=0.291 Sum_probs=47.6
Q ss_pred CCccccHHHHHHHHhcc-CCccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeC
Q 048030 1 VSFSTTKEMLADAFSQF-GQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLD 61 (93)
Q Consensus 1 l~~~~~~~~l~~~f~~~-g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~ 61 (93)
+|-.++-.||..|...+ ..|.+++++++.. -.+=..+|.|.+..+|......+||..+.
T Consensus 82 VP~~mt~~Dll~F~~~~~~~I~~irivRd~~--pnrymvLIkFr~q~da~~Fy~efNGk~Fn 141 (493)
T KOG0804|consen 82 VPAYMTSHDLLRFCASFIKQISDIRIVRDGM--PNRYMVLIKFRDQADADTFYEEFNGKQFN 141 (493)
T ss_pred ccccccHHHHHHHHHHHhhhhheeEEeecCC--CceEEEEEEeccchhHHHHHHHcCCCcCC
Confidence 46778889999998875 4688999999642 23345789999999999999999998765
No 136
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=94.17 E-value=0.2 Score=33.82 Aligned_cols=57 Identities=16% Similarity=0.266 Sum_probs=46.5
Q ss_pred cCCccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCee---C-CeEEEEEecCCC
Q 048030 17 FGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLL---D-GRVIFVDNVRPS 73 (93)
Q Consensus 17 ~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~---~-g~~l~v~~~~~~ 73 (93)
.|.-..+.++.|..+.+.-|||||.|.+.+.+..+.+++||..+ + .+.+.+.|++-+
T Consensus 413 ~gtYDFlYLPiDF~nkcNvGYAFINm~sp~ai~~F~kAFnGk~W~~FnS~Kia~itYArIQ 473 (549)
T KOG4660|consen 413 KGTYDFLYLPIDFKNKCNVGYAFINMTSPEAIIRFYKAFNGKKWEKFNSEKIASITYARIQ 473 (549)
T ss_pred cCccceEEeccccccccccceeEEeecCHHHHHHHHHHHcCCchhhhcceeeeeeehhhhh
Confidence 56666788888988888999999999999999999999999974 3 345577777643
No 137
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=93.97 E-value=0.11 Score=36.83 Aligned_cols=68 Identities=29% Similarity=0.332 Sum_probs=55.9
Q ss_pred ccHHHHHHHHhccCCccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCee--CCeEEEEEecCCCCCCCC
Q 048030 5 TTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLL--DGRVIFVDNVRPSRRYNT 78 (93)
Q Consensus 5 ~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~--~g~~l~v~~~~~~~~~~~ 78 (93)
.+-..|..++..||.+.+.+.+++- ..|.|.|..-+.|-.|+.+|+|..+ .|-+.+|.+++.-+-...
T Consensus 310 ~tSssL~~l~s~yg~v~s~wtlr~~------N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~~~~~ep 379 (1007)
T KOG4574|consen 310 LTSSSLATLCSDYGSVASAWTLRDL------NMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKTLPMYEP 379 (1007)
T ss_pred chHHHHHHHHHhhcchhhheecccc------cchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEeccccccccC
Confidence 4556788999999999999877764 4799999999999999999999974 477889999886655444
No 138
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=93.89 E-value=0.36 Score=23.50 Aligned_cols=55 Identities=18% Similarity=0.265 Sum_probs=41.4
Q ss_pred cccHHHHHHHHhccCCccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeCCeEEEE
Q 048030 4 STTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFV 67 (93)
Q Consensus 4 ~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v 67 (93)
.++-.+++..|..|+-. ++..++ +| =||.|.+..+|++....-++..+.+.+|.+
T Consensus 11 ~~~v~d~K~~Lr~y~~~---~I~~d~-tG-----fYIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRWD---RIRDDR-TG-----FYIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCCcc---eEEecC-CE-----EEEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 46678899999988632 333333 32 489999999999999999998888777654
No 139
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=93.26 E-value=0.29 Score=23.92 Aligned_cols=63 Identities=14% Similarity=0.211 Sum_probs=43.3
Q ss_pred HHHHHHHhccC-CccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecCCC
Q 048030 8 EMLADAFSQFG-QVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPS 73 (93)
Q Consensus 8 ~~l~~~f~~~g-~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~ 73 (93)
++|.+.|...| .+.++.-+..+.+......-||++....+... .|+-..+++..+.|+..+.+
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~~k~---i~~Ik~l~~~~V~vE~~~k~ 65 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPNNKE---IYKIKTLCGQRVKVERPRKR 65 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCccccc---eeehHhhCCeEEEEecCCCC
Confidence 46788888887 45677666666566777788888776544333 35556688989999876544
No 140
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=92.95 E-value=0.44 Score=32.04 Aligned_cols=54 Identities=33% Similarity=0.322 Sum_probs=47.8
Q ss_pred CCccccHHHHHHHHh-ccCCccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHH
Q 048030 1 VSFSTTKEMLADAFS-QFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALAD 54 (93)
Q Consensus 1 l~~~~~~~~l~~~f~-~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~ 54 (93)
||.-++.++|..+|. -||.++.+.|-.|+.-...+|-+-|+|.+...-.+||.+
T Consensus 378 vprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 378 LPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred CCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHhh
Confidence 466678899999999 599999999988877888899999999999999999873
No 141
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=92.88 E-value=0.051 Score=38.56 Aligned_cols=69 Identities=17% Similarity=0.240 Sum_probs=52.8
Q ss_pred CCccccHHHHHHHHhccCCccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEec
Q 048030 1 VSFSTTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNV 70 (93)
Q Consensus 1 l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 70 (93)
|+..+++.+|+..|..+|.+.++.|-..+ -+.-..|+|+.|.+-..+..|+..+.+..|..-.+.+.+.
T Consensus 380 l~~kl~eseiR~af~e~gkve~VDiKtP~-~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~glG 448 (975)
T KOG0112|consen 380 LDSKLTESEIRPAFDESGKVEEVDIKTPH-IKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIGLG 448 (975)
T ss_pred cccchhhhhhhhhhhhhccccccccccCC-CCcccchhhhhhhccccCcccchhhcCCccccCccccccc
Confidence 45678899999999999999888775442 2333458999999999999999999988876444444444
No 142
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=91.42 E-value=0.62 Score=22.89 Aligned_cols=62 Identities=15% Similarity=0.227 Sum_probs=42.0
Q ss_pred HHHHHHHhccC-CccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecCC
Q 048030 8 EMLADAFSQFG-QVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRP 72 (93)
Q Consensus 8 ~~l~~~f~~~g-~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~ 72 (93)
++|.+.|...| .+..+..+..+.++.....-+|......+... .|+-..++|+++.|+....
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~---Il~ik~Lg~~~V~VEr~~k 64 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKE---ILNIKTLGGQRVTVERPHK 64 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccccCCCCcceeEEEEeeecCCCcc---eEeehhhCCeeEEEecCcc
Confidence 46888888888 45677777766666666777787765433322 3455568899999986543
No 143
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=90.33 E-value=0.69 Score=31.67 Aligned_cols=58 Identities=21% Similarity=0.371 Sum_probs=40.7
Q ss_pred CCccccHHHHHHHHhc--cCCccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCe--eCCeEE
Q 048030 1 VSFSTTKEMLADAFSQ--FGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKL--LDGRVI 65 (93)
Q Consensus 1 l~~~~~~~~l~~~f~~--~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~--~~g~~l 65 (93)
+|..+-.++++.+|.. |-...+|.+-.+. -=||+|.+..||+.|.+.|..-+ |.|++|
T Consensus 183 Ipettp~e~Vk~lf~~encPk~iscefa~N~-------nWyITfesd~DAQqAykylreevk~fqgKpI 244 (684)
T KOG2591|consen 183 IPETTPIEVVKALFKGENCPKVISCEFAHND-------NWYITFESDTDAQQAYKYLREEVKTFQGKPI 244 (684)
T ss_pred cCCCChHHHHHHHhccCCCCCceeeeeeecC-------ceEEEeecchhHHHHHHHHHHHHHhhcCcch
Confidence 3556677889999975 6677777775442 24999999999999987665432 445443
No 144
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=89.63 E-value=1.3 Score=21.33 Aligned_cols=18 Identities=22% Similarity=0.423 Sum_probs=14.9
Q ss_pred HHHHHHHhccCCccEEEE
Q 048030 8 EMLADAFSQFGQVTEATI 25 (93)
Q Consensus 8 ~~l~~~f~~~g~i~~~~~ 25 (93)
.+||++|+..|.|.-+.+
T Consensus 9 ~~iR~~fs~lG~I~vLYv 26 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYV 26 (62)
T ss_pred HHHHHHHHhcCcEEEEEE
Confidence 589999999999976544
No 145
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=89.39 E-value=0.7 Score=28.54 Aligned_cols=69 Identities=23% Similarity=0.405 Sum_probs=48.4
Q ss_pred CCccccHHHHHHHHhccCCccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCC----eeCCeEEEEEec
Q 048030 1 VSFSTTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGK----LLDGRVIFVDNV 70 (93)
Q Consensus 1 l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~----~~~g~~l~v~~~ 70 (93)
|...++.+.+.+.|+.||.|..--+..|. .++..+-.+|.|.....+.+|+....-. ...+++..|...
T Consensus 39 l~~~~sndll~~~f~~fg~~e~av~~vD~-r~k~t~eg~v~~~~k~~a~~a~rr~~~~g~~~~~~~~p~~VeP~ 111 (275)
T KOG0115|consen 39 LMQGASNDLLEQAFRRFGPIERAVAKVDD-RGKPTREGIVEFAKKPNARKAARRCREGGFGGTTGGRPVGVEPM 111 (275)
T ss_pred cchhhhhHHHHHhhhhcCccchheeeecc-cccccccchhhhhcchhHHHHHHHhccCccccCCCCCccCCChh
Confidence 34567888999999999999754444442 5777788899999999999888865322 234555555443
No 146
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.53 E-value=5.2 Score=26.60 Aligned_cols=46 Identities=22% Similarity=0.197 Sum_probs=36.5
Q ss_pred CccccHHHHHHHHhccCC-ccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHH
Q 048030 2 SFSTTKEMLADAFSQFGQ-VTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALAD 54 (93)
Q Consensus 2 ~~~~~~~~l~~~f~~~g~-i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~ 54 (93)
|...-.+||...|+.|+. -..|+++-+. .+|..|.+...|..+|..
T Consensus 400 p~efkteDll~~f~~yq~kgfdIkWvDdt-------halaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 400 PDEFKTEDLLKAFETYQNKGFDIKWVDDT-------HALAVFSSVNRAAEALTL 446 (528)
T ss_pred chhhccHHHHHHHHHhhcCCceeEEeecc-------eeEEeecchHHHHHHhhc
Confidence 445556788899999864 5678887764 799999999999999873
No 147
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=81.43 E-value=1.6 Score=27.43 Aligned_cols=59 Identities=24% Similarity=0.159 Sum_probs=41.5
Q ss_pred cHHHHHHHHhccCCccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeCCeE
Q 048030 6 TKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRV 64 (93)
Q Consensus 6 ~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~ 64 (93)
.+.+...++..+|................++++++.|...+.+..++.........+..
T Consensus 101 e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~ 159 (285)
T KOG4210|consen 101 EESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNK 159 (285)
T ss_pred hhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhcccccccc
Confidence 34445566777787766655555557788999999999999999999854333444433
No 148
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=73.76 E-value=7 Score=24.66 Aligned_cols=34 Identities=26% Similarity=0.242 Sum_probs=23.4
Q ss_pred EEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecCCC
Q 048030 38 GYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPS 73 (93)
Q Consensus 38 ~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~ 73 (93)
|||+|.+..+|+.+++.+....- +.+.++.+-..
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~~--~~~~v~~APeP 34 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKRP--NSWRVSPAPEP 34 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCCC--CCceEeeCCCc
Confidence 69999999999999986544332 33455555433
No 149
>PF11411 DNA_ligase_IV: DNA ligase IV; InterPro: IPR021536 DNA ligase IV along with Xrcc4 functions in DNA non-homologous end joining. This process is required to mend double-strand breaks. Upon ligase binding to an Xrcc4 dimer, the helical tails unwind leading to a flat interaction surface []. ; GO: 0003910 DNA ligase (ATP) activity; PDB: 3II6_Y 2E2W_A 1IK9_C.
Probab=73.24 E-value=3.6 Score=17.51 Aligned_cols=15 Identities=20% Similarity=0.481 Sum_probs=9.7
Q ss_pred cccHHHHHHHHhccC
Q 048030 4 STTKEMLADAFSQFG 18 (93)
Q Consensus 4 ~~~~~~l~~~f~~~g 18 (93)
++++++|+++|...+
T Consensus 20 Dtd~~~Lk~vF~~i~ 34 (36)
T PF11411_consen 20 DTDEDQLKEVFNRIK 34 (36)
T ss_dssp ---HHHHHHHHHCS-
T ss_pred cCCHHHHHHHHHHhc
Confidence 578899999998764
No 150
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=72.03 E-value=7.9 Score=21.00 Aligned_cols=46 Identities=20% Similarity=0.413 Sum_probs=26.6
Q ss_pred ccHHHHHHHHhccCCccEEEEeecCCCCCcccEEEEEecCH-HHHHHHHH
Q 048030 5 TTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTE-EEAQKALA 53 (93)
Q Consensus 5 ~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~-~~a~~a~~ 53 (93)
++.+.|...|+.|..+. ++.+.++ ..+.|++.|.|... .-...|+.
T Consensus 29 ~~~~~l~~~l~~f~p~k-v~~l~~~--~gh~g~aiv~F~~~w~Gf~~A~~ 75 (116)
T PF03468_consen 29 MSNEELLDKLAEFNPLK-VKPLYGK--QGHTGFAIVEFNKDWSGFKNAMR 75 (116)
T ss_dssp --SHHHHHHHHH---SE-EEEEEET--TEEEEEEEEE--SSHHHHHHHHH
T ss_pred cCHHHHHHHHHhcCCce-eEECcCC--CCCcEEEEEEECCChHHHHHHHH
Confidence 45578999999998874 5566665 35789999999743 33444443
No 151
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=70.94 E-value=1.6 Score=26.60 Aligned_cols=58 Identities=29% Similarity=0.385 Sum_probs=45.2
Q ss_pred ccccHHHHHHHHhccCCccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeC
Q 048030 3 FSTTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLD 61 (93)
Q Consensus 3 ~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~ 61 (93)
..++++.+..+|+.-|.+..+++..+. .+.++.+.|+.+......-.++...++...-
T Consensus 94 ~r~~~ei~~~v~s~a~p~~~~R~~~~~-d~rnrn~~~~~~qr~~~~P~~~~~y~~l~~~ 151 (267)
T KOG4454|consen 94 ERVTEEILYEVFSQAGPIEGVRIPTDN-DGRNRNFGFVTYQRLCAVPFALDLYQGLELF 151 (267)
T ss_pred hhcchhhheeeecccCCCCCccccccc-cCCccCccchhhhhhhcCcHHhhhhcccCcC
Confidence 346778888889999999999888876 4778889999988777777777766665433
No 152
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=70.04 E-value=3.1 Score=26.29 Aligned_cols=22 Identities=27% Similarity=0.572 Sum_probs=18.9
Q ss_pred ccHHHHHHHHhccCCccEEEEe
Q 048030 5 TTKEMLADAFSQFGQVTEATII 26 (93)
Q Consensus 5 ~~~~~l~~~f~~~g~i~~~~~~ 26 (93)
-+++-|+..|..||.|..+.|+
T Consensus 173 pse~rlr~a~eafg~ir~vdip 194 (445)
T KOG2891|consen 173 PSEDRLRKAFEAFGEIRNVDIP 194 (445)
T ss_pred ChHHHHHHHHHHhccceecCCc
Confidence 4678899999999999888775
No 153
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=65.74 E-value=3.7 Score=28.78 Aligned_cols=56 Identities=13% Similarity=0.163 Sum_probs=43.7
Q ss_pred ccHHHHHHHHhccCCccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEe
Q 048030 5 TTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDN 69 (93)
Q Consensus 5 ~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 69 (93)
+.++-++.++..+|.+..+..+. |+|..|.+.....+|+..+....+.|..+.+..
T Consensus 52 ~s~~~~~~il~~~g~v~s~kr~~---------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~ 107 (668)
T KOG2253|consen 52 VSQEFWKSILAKSGFVPSWKRDK---------FGFCEFLKHIGDLRASRLLTELNIDDQKLIENV 107 (668)
T ss_pred hhHHHHHHHHhhCCcchhhhhhh---------hcccchhhHHHHHHHHHHhcccCCCcchhhccc
Confidence 45667778888899887664422 899999999999999998888888877765544
No 154
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=65.32 E-value=12 Score=18.87 Aligned_cols=28 Identities=25% Similarity=0.393 Sum_probs=22.5
Q ss_pred CCcccEEEEEecCHHHHHHHHHHhCCCe
Q 048030 32 NRSKGYGYVTFSTEEEAQKALADMNGKL 59 (93)
Q Consensus 32 ~~~~g~~fv~f~~~~~a~~a~~~l~~~~ 59 (93)
...+||-||+=.+..++..|+..+.+..
T Consensus 41 ~~lkGyIyVEA~~~~~V~~ai~gi~~i~ 68 (84)
T PF03439_consen 41 DSLKGYIYVEAERESDVKEAIRGIRHIR 68 (84)
T ss_dssp TTSTSEEEEEESSHHHHHHHHTT-TTEE
T ss_pred CCCceEEEEEeCCHHHHHHHHhccccee
Confidence 3377999999999999999988776544
No 155
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=65.25 E-value=18 Score=21.44 Aligned_cols=38 Identities=18% Similarity=0.266 Sum_probs=30.1
Q ss_pred cEEEEEecCHHHHHHHHHHhCCCeeCCe-EEEEEecCCC
Q 048030 36 GYGYVTFSTEEEAQKALADMNGKLLDGR-VIFVDNVRPS 73 (93)
Q Consensus 36 g~~fv~f~~~~~a~~a~~~l~~~~~~g~-~l~v~~~~~~ 73 (93)
+...|.|.+...|..|...++...+.|. .+..-++...
T Consensus 52 rrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~yfaQ~~ 90 (193)
T KOG4019|consen 52 RRVRINFSNPEAAADARIKLHSTSFNGKNELKLYFAQPG 90 (193)
T ss_pred ceeEEeccChhHHHHHHHHhhhcccCCCceEEEEEccCC
Confidence 3567899999999999999999999887 6666555543
No 156
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=65.09 E-value=0.45 Score=31.51 Aligned_cols=66 Identities=21% Similarity=0.371 Sum_probs=49.8
Q ss_pred CCccccHHHHHHHHhccCCccEEEEe-ecCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEec
Q 048030 1 VSFSTTKEMLADAFSQFGQVTEATII-MDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNV 70 (93)
Q Consensus 1 l~~~~~~~~l~~~f~~~g~i~~~~~~-~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 70 (93)
+|+...|+-+-.++..||.+..|..+ .++++ -..-++|...+.+.-|+..|++..+...-+.+.|-
T Consensus 88 ippql~wevld~Ll~qyg~ve~~eqvnt~~et----avvnvty~~~~~~~~ai~kl~g~Q~en~~~k~~Yi 154 (584)
T KOG2193|consen 88 IPPQLQWEVLDSLLAQYGTVENCEQVNTDSET----AVVNVTYSAQQQHRQAIHKLNGPQLENQHLKVGYI 154 (584)
T ss_pred CCHHHHHHHHHHHHhccCCHhHhhhhccchHH----HHHHHHHHHHHHHHHHHHhhcchHhhhhhhhcccC
Confidence 35666778888999999999887543 33322 23346888899999999999999998887777765
No 157
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=54.61 E-value=6.9 Score=24.44 Aligned_cols=62 Identities=11% Similarity=0.193 Sum_probs=43.4
Q ss_pred HHHHhccCCccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecCCC
Q 048030 11 ADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPS 73 (93)
Q Consensus 11 ~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~ 73 (93)
...|+.+-.+...+++++. .+..++++|+.|........+...-++..++.+++++....++
T Consensus 117 ~~~f~~~p~L~ktk~v~~~-p~~~~~~~~~~~k~s~a~~k~~~~~~~Kki~~~~VR~a~gtsw 178 (290)
T KOG0226|consen 117 PVVFSEYPSLVKTKLVRDR-PQPIRPEAFESFKASDALLKAETEKEKKKIGKPPVRLAAGTSW 178 (290)
T ss_pred hhhhccchhhhhhhhhhcC-CCccCcccccCcchhhhhhhhccccccccccCcceeecccccc
Confidence 4556666666677777765 6778899999998877777777665666676666665554443
No 158
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=53.26 E-value=32 Score=17.81 Aligned_cols=31 Identities=26% Similarity=0.297 Sum_probs=21.0
Q ss_pred EEEEecCHHHHHHHHHHhCCCe--eCCeEEEEEe
Q 048030 38 GYVTFSTEEEAQKALADMNGKL--LDGRVIFVDN 69 (93)
Q Consensus 38 ~fv~f~~~~~a~~a~~~l~~~~--~~g~~l~v~~ 69 (93)
|.|+|.+..-|++.++ +..+. +++..+.|.-
T Consensus 1 AlITF~e~~VA~~i~~-~~~~~v~l~~~~~~V~v 33 (88)
T PF07292_consen 1 ALITFEEEGVAQRILK-KKKHPVPLEDCCVRVKV 33 (88)
T ss_pred CEEEeCcHHHHHHHHh-CCEEEEEECCEEEEEEE
Confidence 5799999999999887 33333 5555555443
No 159
>PRK10905 cell division protein DamX; Validated
Probab=52.13 E-value=64 Score=21.02 Aligned_cols=53 Identities=9% Similarity=0.062 Sum_probs=32.0
Q ss_pred ccHHHHHHHHhccCCccEEEEeecCCCCC-cccEEEEEecCHHHHHHHHHHhCCC
Q 048030 5 TTKEMLADAFSQFGQVTEATIIMDKGKNR-SKGYGYVTFSTEEEAQKALADMNGK 58 (93)
Q Consensus 5 ~~~~~l~~~f~~~g~i~~~~~~~~~~~~~-~~g~~fv~f~~~~~a~~a~~~l~~~ 58 (93)
.+++.++.+..+.|- ....+......|+ -.-.-+-.|.+.++|.+|+..|...
T Consensus 256 Ss~~~l~~fakKlgL-~~y~vy~TtRnGkpWYVV~yG~YaSraeAk~AiakLPa~ 309 (328)
T PRK10905 256 SNYDNLNGWAKKENL-KNYVVYETTRNGQPWYVLVSGVYASKEEAKRAVSTLPAD 309 (328)
T ss_pred CCHHHHHHHHHHcCC-CceEEEEeccCCceEEEEEecCCCCHHHHHHHHHHCCHH
Confidence 356777777777753 3332322222343 2223455889999999999988543
No 160
>PF10281 Ish1: Putative stress-responsive nuclear envelope protein; InterPro: IPR018803 This group of proteins, found primarily in fungi, consists of putative stress-responsive nuclear envelope protein Ish1 and homologues [].
Probab=50.32 E-value=18 Score=15.20 Aligned_cols=17 Identities=12% Similarity=0.057 Sum_probs=14.2
Q ss_pred cccHHHHHHHHhccCCc
Q 048030 4 STTKEMLADAFSQFGQV 20 (93)
Q Consensus 4 ~~~~~~l~~~f~~~g~i 20 (93)
.++.++|+..+..+|..
T Consensus 3 tWs~~~L~~wL~~~gi~ 19 (38)
T PF10281_consen 3 TWSDSDLKSWLKSHGIP 19 (38)
T ss_pred CCCHHHHHHHHHHcCCC
Confidence 46889999999998854
No 161
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=49.05 E-value=40 Score=21.66 Aligned_cols=39 Identities=10% Similarity=0.089 Sum_probs=27.4
Q ss_pred CCccccHHHHHHHHhccCCc-cEEEEeecCCCCCcccEEEEEecCH
Q 048030 1 VSFSTTKEMLADAFSQFGQV-TEATIIMDKGKNRSKGYGYVTFSTE 45 (93)
Q Consensus 1 l~~~~~~~~l~~~f~~~g~i-~~~~~~~~~~~~~~~g~~fv~f~~~ 45 (93)
||.++.-.||+..+.+.+.. .++.+ ..+.+-||+.|.+.
T Consensus 338 l~rd~rv~dlk~~lr~~~~~pm~isw------kg~~~k~flh~~~~ 377 (396)
T KOG4410|consen 338 LSRDIRVKDLKSELRKRECTPMSISW------KGHFGKCFLHFGNR 377 (396)
T ss_pred CccccchHHHHHHHHhcCCCceeEee------ecCCcceeEecCCc
Confidence 56777888999999888765 34444 12456799999764
No 162
>PRK11901 hypothetical protein; Reviewed
Probab=47.34 E-value=75 Score=20.75 Aligned_cols=51 Identities=14% Similarity=0.219 Sum_probs=31.7
Q ss_pred cHHHHHHHHhccCCccEEEEeecCCCCCcccEE--EEEecCHHHHHHHHHHhCCC
Q 048030 6 TKEMLADAFSQFGQVTEATIIMDKGKNRSKGYG--YVTFSTEEEAQKALADMNGK 58 (93)
Q Consensus 6 ~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~--fv~f~~~~~a~~a~~~l~~~ 58 (93)
+++.|..|....+ +..+.+......|+. .|. |-.|.+.++|..|+..|...
T Consensus 255 ~~~~L~~f~~~~~-L~~~~VYqT~RnGkp-WYVVvyG~Y~Sr~eAk~Ai~sLPa~ 307 (327)
T PRK11901 255 RSDTLNAYAKKQN-LSHYHVYETKRDGKP-WYVLVSGNYASSAEAKRAIATLPAE 307 (327)
T ss_pred CHHHHHHHHHHcC-cCceEEEEEEECCce-EEEEEecCcCCHHHHHHHHHhCCHH
Confidence 4667777776665 344444433223332 333 34789999999999988653
No 163
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=46.91 E-value=35 Score=16.53 Aligned_cols=24 Identities=25% Similarity=0.318 Sum_probs=19.4
Q ss_pred EEEEEecCHHHHHHHHHHhCCCee
Q 048030 37 YGYVTFSTEEEAQKALADMNGKLL 60 (93)
Q Consensus 37 ~~fv~f~~~~~a~~a~~~l~~~~~ 60 (93)
+.++.|.+..+|.+|-+.|....+
T Consensus 3 ~~~i~F~st~~a~~~ek~lk~~gi 26 (73)
T PF11823_consen 3 YYLITFPSTHDAMKAEKLLKKNGI 26 (73)
T ss_pred eEEEEECCHHHHHHHHHHHHHCCC
Confidence 578999999999998887766544
No 164
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=45.70 E-value=1.1e+02 Score=21.82 Aligned_cols=59 Identities=5% Similarity=0.124 Sum_probs=42.5
Q ss_pred cccHHHHHHHHhccCCcc-----EEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecC
Q 048030 4 STTKEMLADAFSQFGQVT-----EATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVR 71 (93)
Q Consensus 4 ~~~~~~l~~~f~~~g~i~-----~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 71 (93)
.++..+|..++..-+.|. .|+|.- .|.||+.. ...+...+..|++..+.|+++.|+.++
T Consensus 498 ~~~~~~~~~~i~~~~~~~~~~ig~i~i~~--------~~s~v~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 561 (629)
T PRK11634 498 GVEVRHIVGAIANEGDISSRYIGNIKLFA--------SHSTIELP-KGMPGEVLQHFTRTRILNKPMNMQLLG 561 (629)
T ss_pred CCCHHHHHHHHHhhcCCChhhCCcEEEeC--------CceEEEcC-hhhHHHHHHHhccccccCCceEEEECC
Confidence 355666777776655443 345522 37898885 466888999999999999999999874
No 165
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=45.03 E-value=83 Score=20.29 Aligned_cols=67 Identities=15% Similarity=0.231 Sum_probs=41.7
Q ss_pred cccHHHHHHHHhccCCccEEEEeecC-------CCCCcccEEEEEecCHHHHHH----HHHHhCCCe--eCCeEEEEEec
Q 048030 4 STTKEMLADAFSQFGQVTEATIIMDK-------GKNRSKGYGYVTFSTEEEAQK----ALADMNGKL--LDGRVIFVDNV 70 (93)
Q Consensus 4 ~~~~~~l~~~f~~~g~i~~~~~~~~~-------~~~~~~g~~fv~f~~~~~a~~----a~~~l~~~~--~~g~~l~v~~~ 70 (93)
+++-..+...|.+||.|.++.++.+. ...+......+.|-+.+.+.. .+++|.... +....|.+.+.
T Consensus 26 sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEfK~~L~S~~L~lsFV 105 (309)
T PF10567_consen 26 SIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEFKTKLKSESLTLSFV 105 (309)
T ss_pred cccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHHHHhcCCcceeEEEE
Confidence 45555667778899999999887654 122334567788888877654 334444332 44555555554
No 166
>PRK09213 pur operon repressor; Provisional
Probab=43.58 E-value=84 Score=19.89 Aligned_cols=43 Identities=23% Similarity=0.401 Sum_probs=31.3
Q ss_pred HHHHHHhccCCccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhC
Q 048030 9 MLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMN 56 (93)
Q Consensus 9 ~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~ 56 (93)
-+++.|+..|.-.-..+ .|..-|.-|+-+.+.++|...+..|.
T Consensus 46 i~~~~~~~~~~g~~~t~-----~ga~ggv~~~p~~~~~~a~~~~~~L~ 88 (271)
T PRK09213 46 IIKETFEKQGIGTLETV-----PGAAGGVKYIPSISEEEAREFVEELC 88 (271)
T ss_pred HHHHHHHhcCCceEEEe-----CCCCCCeEEEcCCCHHHHHHHHHHHH
Confidence 57888887664432222 56777889999999999998887664
No 167
>PHA03048 IMV membrane protein; Provisional
Probab=43.49 E-value=2.6 Score=21.77 Aligned_cols=21 Identities=19% Similarity=0.533 Sum_probs=14.9
Q ss_pred EEEEEecCHHHHHHHHHHhCC
Q 048030 37 YGYVTFSTEEEAQKALADMNG 57 (93)
Q Consensus 37 ~~fv~f~~~~~a~~a~~~l~~ 57 (93)
||||+|+.......++++|.+
T Consensus 28 fAfidfsK~k~~~~~wRalsi 48 (93)
T PHA03048 28 FAFVDFSKNKATVTVWRALSG 48 (93)
T ss_pred HhhhhhhcCCCcchhHHHHHH
Confidence 789999876665666666554
No 168
>TIGR01743 purR_Bsub pur operon repressor, Bacillus subtilis type. This model represents the puring operon repressor PurR of low-GC Gram-positive bacteria. This homodimeric repressor contains a large region homologous to phosphoribosyltransferases and is inhibited by 5-phosphoribosyl 1-pyrophosphate.
Probab=42.94 E-value=85 Score=19.82 Aligned_cols=44 Identities=18% Similarity=0.389 Sum_probs=31.4
Q ss_pred HHHHHHhccCCccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCC
Q 048030 9 MLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNG 57 (93)
Q Consensus 9 ~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~ 57 (93)
-+++.|+..|.-.-..+ .|..-|.-|+-+.+.+++...+..|..
T Consensus 44 i~~~~~~~~~~g~~~t~-----~ga~ggv~~~p~~~~~~~~~~~~~l~~ 87 (268)
T TIGR01743 44 IIKETFEKFGIGKLLTV-----PGAAGGVKYIPKMSQAEAEEFVEELCQ 87 (268)
T ss_pred HHHHHHHhcCCceEEEe-----CCCCCCeEEEeCCCHHHHHHHHHHHHH
Confidence 57888887764432222 567778899999999999888776543
No 169
>PF13037 DUF3898: Domain of unknown function (DUF3898)
Probab=42.29 E-value=30 Score=17.90 Aligned_cols=51 Identities=18% Similarity=0.355 Sum_probs=32.2
Q ss_pred ccHHHHHHHHhccCCccEEEEeecC--------CCCCcccEEEEEecCHHHHHHHHHHh
Q 048030 5 TTKEMLADAFSQFGQVTEATIIMDK--------GKNRSKGYGYVTFSTEEEAQKALADM 55 (93)
Q Consensus 5 ~~~~~l~~~f~~~g~i~~~~~~~~~--------~~~~~~g~~fv~f~~~~~a~~a~~~l 55 (93)
.+.-+++.+++.||.-.++.-+.++ .-.=-+|+.=|+|..+++.+..+.++
T Consensus 31 Ld~~~Vk~lLaDfG~~iHiAKv~~RYv~liEgd~~~FEKG~SPVEflkP~~l~~V~eri 89 (91)
T PF13037_consen 31 LDHTTVKGLLADFGETIHIAKVNDRYVLLIEGDSLQFEKGFSPVEFLKPEDLQEVIERI 89 (91)
T ss_pred cCceehhHHHHhhccceeEEEECCEEEEEEEcceEEEccCCCceeeeCchhHHHHHHHh
Confidence 4556789999999976665322111 11112456667888888887777755
No 170
>PF13689 DUF4154: Domain of unknown function (DUF4154)
Probab=41.16 E-value=64 Score=17.90 Aligned_cols=36 Identities=22% Similarity=0.380 Sum_probs=26.1
Q ss_pred cEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecCC
Q 048030 36 GYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRP 72 (93)
Q Consensus 36 g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~ 72 (93)
.+-+..+.+.. ...++..|.+..+.++++.|..-..
T Consensus 27 ~~~icv~g~~~-~~~~L~~l~~~~~~~~~i~v~~~~~ 62 (145)
T PF13689_consen 27 PFRICVLGDDP-FAEALSTLAGKQVGGRPIRVRRLSS 62 (145)
T ss_pred CeEEEEECChH-HHHHHHHhhhcccCCCcEEEEECCC
Confidence 35555665544 5567888888899999999987643
No 171
>PHA02898 virion envelope protein; Provisional
Probab=38.69 E-value=5.6 Score=20.54 Aligned_cols=21 Identities=29% Similarity=0.430 Sum_probs=14.1
Q ss_pred EEEEEecCHH-HHHHHHHHhCC
Q 048030 37 YGYVTFSTEE-EAQKALADMNG 57 (93)
Q Consensus 37 ~~fv~f~~~~-~a~~a~~~l~~ 57 (93)
|||++|+... ..+.++++|..
T Consensus 28 fAfidfSK~~~~~~~~wRalSi 49 (92)
T PHA02898 28 CAYIELSKSEKPADSALRSISI 49 (92)
T ss_pred HheehhhcCCCcchhHHHHHHH
Confidence 7999998665 33666665554
No 172
>TIGR02542 B_forsyth_147 Bacteroides forsythus 147-residue repeat. The longest predicted protein in Bacteroides forsythus ATCC 43037 is over 3000 residues long and lacks homology to other known proteins. Immediately after the signal sequence are four tandem repeats, approximately 147 residues long. This model describes that repeat. This model describes that repeat.
Probab=38.14 E-value=29 Score=19.10 Aligned_cols=44 Identities=16% Similarity=0.234 Sum_probs=26.6
Q ss_pred CccccHHHHHHHHhc---cCCccEEEEeecCCCCCcccEEEEEecCH
Q 048030 2 SFSTTKEMLADAFSQ---FGQVTEATIIMDKGKNRSKGYGYVTFSTE 45 (93)
Q Consensus 2 ~~~~~~~~l~~~f~~---~g~i~~~~~~~~~~~~~~~g~~fv~f~~~ 45 (93)
|+.++-.+++++|.. |..|..-++.++-....+-..||.-|...
T Consensus 83 PYTlT~~e~r~iF~Epm~YQGITReQV~rdGLP~GsYRiCFrL~~~~ 129 (145)
T TIGR02542 83 PYTLTYNELRQIFREPMVYQGITREQVQRDGLPEGSYRICFRLFNAT 129 (145)
T ss_pred ceeeeHHHHHHHHhhhhhhccccHHHHhhcCCCCCceEEEEEEeccc
Confidence 566788899999974 44454444444433333445677776544
No 173
>KOG3003 consensus Molecular chaperone of the GrpE family [Posttranslational modification, protein turnover, chaperones]
Probab=37.58 E-value=1e+02 Score=19.15 Aligned_cols=16 Identities=25% Similarity=0.441 Sum_probs=13.6
Q ss_pred ccHHHHHHHHhccCCc
Q 048030 5 TTKEMLADAFSQFGQV 20 (93)
Q Consensus 5 ~~~~~l~~~f~~~g~i 20 (93)
+++..|.++|.++|-+
T Consensus 162 mte~ql~~vf~KhGLe 177 (236)
T KOG3003|consen 162 MTEAQLKEVFAKHGLE 177 (236)
T ss_pred HHHHHHHHHHHHcCce
Confidence 5788999999999954
No 174
>PF10905 DUF2695: Protein of unknown function (DUF2695); InterPro: IPR024248 This bacterial family of proteins has no known function.
Probab=36.11 E-value=52 Score=15.31 Aligned_cols=24 Identities=8% Similarity=0.126 Sum_probs=18.5
Q ss_pred cccHHHHHHHHhccCCccEEEEee
Q 048030 4 STTKEMLADAFSQFGQVTEATIIM 27 (93)
Q Consensus 4 ~~~~~~l~~~f~~~g~i~~~~~~~ 27 (93)
.++.+++...|.+.|...++.|+.
T Consensus 29 ~~~~~~vl~~l~~nGg~CDCEVl~ 52 (53)
T PF10905_consen 29 QLDWEDVLEWLRENGGYCDCEVLY 52 (53)
T ss_pred CCCHHHHHHHHHHcCCCcceeeec
Confidence 356688888899988888887754
No 175
>PHA01632 hypothetical protein
Probab=33.68 E-value=49 Score=15.59 Aligned_cols=16 Identities=25% Similarity=0.306 Sum_probs=12.1
Q ss_pred CCccccHHHHHHHHhc
Q 048030 1 VSFSTTKEMLADAFSQ 16 (93)
Q Consensus 1 l~~~~~~~~l~~~f~~ 16 (93)
+|..-++++|+.++.+
T Consensus 24 vp~kpteeelrkvlpk 39 (64)
T PHA01632 24 VPQKPTEEELRKVLPK 39 (64)
T ss_pred cCCCCCHHHHHHHHHH
Confidence 3667788999888764
No 176
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=32.28 E-value=40 Score=13.06 Aligned_cols=14 Identities=21% Similarity=0.254 Sum_probs=9.2
Q ss_pred ccHHHHHHHHh-ccC
Q 048030 5 TTKEMLADAFS-QFG 18 (93)
Q Consensus 5 ~~~~~l~~~f~-~~g 18 (93)
++.++++.++. ..|
T Consensus 17 I~~~el~~~l~~~lG 31 (31)
T PF13405_consen 17 IDFEELRAILRKSLG 31 (31)
T ss_dssp EEHHHHHHHHHHHTT
T ss_pred CcHHHHHHHHHHhcC
Confidence 56677777776 444
No 177
>PF06014 DUF910: Bacterial protein of unknown function (DUF910); InterPro: IPR009256 This family consists of several short bacterial proteins of unknown function.; PDB: 2NN4_A.
Probab=31.30 E-value=39 Score=16.31 Aligned_cols=16 Identities=13% Similarity=0.181 Sum_probs=9.7
Q ss_pred HHHHHHHHhccCCccE
Q 048030 7 KEMLADAFSQFGQVTE 22 (93)
Q Consensus 7 ~~~l~~~f~~~g~i~~ 22 (93)
--|+.+++.+||.+..
T Consensus 4 lyDVqQLLK~fG~~IY 19 (62)
T PF06014_consen 4 LYDVQQLLKKFGIIIY 19 (62)
T ss_dssp HHHHHHHHHTTS----
T ss_pred HHHHHHHHHHCCEEEE
Confidence 3478889999987543
No 178
>PF05573 NosL: NosL; InterPro: IPR008719 NosL is one of the accessory proteins of the nos (nitrous oxide reductase) gene cluster. NosL is a monomeric protein of 18,540 MW that specifically and stoichiometrically binds Cu(I). The copper ion in NosL is ligated by a Cys residue, and one Met and one His are thought to serve as the other ligands. It is possible that NosL is a copper chaperone involved in metallocentre assembly []. This entry also contains HTH-type transcriptional repressors, including YcnK. YcnK may act as a negative transcriptional regulator of YcnJ in the presence of copper and may use copper as a corepressor. The gene, ycnK, is significantly induced under copper-limiting conditions.; PDB: 2HQ3_A 2HPU_A.
Probab=30.53 E-value=1.1e+02 Score=17.27 Aligned_cols=22 Identities=18% Similarity=0.374 Sum_probs=16.0
Q ss_pred cccEEEEEecCHHHHHHHHHHh
Q 048030 34 SKGYGYVTFSTEEEAQKALADM 55 (93)
Q Consensus 34 ~~g~~fv~f~~~~~a~~a~~~l 55 (93)
.-|...+-|.+.++|++.....
T Consensus 113 pMg~~~~aF~~~~~A~~F~~~~ 134 (149)
T PF05573_consen 113 PMGPDLIAFASKEDAEAFAKEH 134 (149)
T ss_dssp TTS--EEEES-HHHHHHHHHHT
T ss_pred CCCCcccccCCHHHHHHHHHHc
Confidence 3467899999999999998865
No 179
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=30.22 E-value=64 Score=21.48 Aligned_cols=60 Identities=15% Similarity=0.292 Sum_probs=37.7
Q ss_pred CCccccHHHHHHHHhccCCccE-EEEeecCC--CCCcccEEEEEecCHHHHHHHHHHhCCCee
Q 048030 1 VSFSTTKEMLADAFSQFGQVTE-ATIIMDKG--KNRSKGYGYVTFSTEEEAQKALADMNGKLL 60 (93)
Q Consensus 1 l~~~~~~~~l~~~f~~~g~i~~-~~~~~~~~--~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~ 60 (93)
||+..++.++.+....+-.-.+ ..+..... -....+.+||.|...++.......++|+.+
T Consensus 15 lpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~if 77 (376)
T KOG1295|consen 15 LPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIF 77 (376)
T ss_pred CCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEE
Confidence 6777788777776666543221 12211110 111246789999999998888888888774
No 180
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=29.51 E-value=62 Score=22.59 Aligned_cols=40 Identities=33% Similarity=0.444 Sum_probs=31.9
Q ss_pred cccEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecCCC
Q 048030 34 SKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPS 73 (93)
Q Consensus 34 ~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~ 73 (93)
...++++.|.+...+.+|+..++|....+..+.+......
T Consensus 62 ~~~~~~~~~et~~~~~ka~~~v~g~~~k~~~~~~~~~~~~ 101 (534)
T KOG2187|consen 62 MPKYAYVTFETPSDAGKAINLVDGLLYKGFILRVQLGATE 101 (534)
T ss_pred CCCceEEEEeccchhhhHHHHHhhhhhhcchhhhhhcccc
Confidence 3468999999999999999999998877766666555433
No 181
>PF00585 Thr_dehydrat_C: C-terminal regulatory domain of Threonine dehydratase; InterPro: IPR001721 Threonine dehydratases including Serine/threonine dehydratase (see IPR001926 from INTERPRO) contain a common C-terminal region that may have a regulatory role. Some members contain two copies of this region [].; GO: 0004794 L-threonine ammonia-lyase activity, 0009097 isoleucine biosynthetic process; PDB: 1TDJ_A 3IAU_A.
Probab=29.25 E-value=89 Score=15.98 Aligned_cols=50 Identities=10% Similarity=0.086 Sum_probs=30.1
Q ss_pred HHHHHHhccCCccEEEEeecCCCCCcccEEEEEec--CHHHHHHHHHHhCCC
Q 048030 9 MLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFS--TEEEAQKALADMNGK 58 (93)
Q Consensus 9 ~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~--~~~~a~~a~~~l~~~ 58 (93)
.++.++...+.-.+|.....+.++...+..+|.+. +.++.+..+..|+..
T Consensus 23 al~~F~~~l~~~~nITeF~YR~~~~~~a~vlvgi~v~~~~~~~~l~~~L~~~ 74 (91)
T PF00585_consen 23 ALKRFLDALGPRNNITEFHYRYSGDDFARVLVGIEVPDAEDLEELIERLKAL 74 (91)
T ss_dssp HCHHHHHCCSSSE-EEEEEEE-TTTSCSEEEEEEE-SSTHHHHHHHHHHTSS
T ss_pred HHHHHHHHhCCCceEEEEEEcCCCCCeeeEEEEEEeCCHHHHHHHHHHHHHc
Confidence 46677777776654544443446667788887765 445556666666553
No 182
>smart00540 LEM in nuclear membrane-associated proteins. LEM, domain in nuclear membrane-associated proteins, including lamino-associated polypeptide 2 and emerin.
Probab=29.12 E-value=56 Score=14.51 Aligned_cols=17 Identities=18% Similarity=0.290 Sum_probs=13.7
Q ss_pred cccHHHHHHHHhccCCc
Q 048030 4 STTKEMLADAFSQFGQV 20 (93)
Q Consensus 4 ~~~~~~l~~~f~~~g~i 20 (93)
..+.++|+..+.+||..
T Consensus 5 ~LSd~eL~~~L~~~G~~ 21 (44)
T smart00540 5 RLSDAELRAELKQYGLP 21 (44)
T ss_pred HcCHHHHHHHHHHcCCC
Confidence 46788999999998853
No 183
>PF13046 DUF3906: Protein of unknown function (DUF3906)
Probab=28.98 E-value=80 Score=15.34 Aligned_cols=33 Identities=30% Similarity=0.412 Sum_probs=21.1
Q ss_pred cHHHHHHHHhccCCccEEEEeecCCCCCcccEEEE
Q 048030 6 TKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYV 40 (93)
Q Consensus 6 ~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv 40 (93)
-+.+|...|-.-..+.++.+...+.- .+|-+||
T Consensus 31 ~e~eler~fl~~P~v~e~~l~EKKri--~~G~gyV 63 (64)
T PF13046_consen 31 VEVELERHFLPLPEVKEVALYEKKRI--RKGAGYV 63 (64)
T ss_pred HHHHhhhhccCCCCceEEEEEEEEee--eCCceeE
Confidence 35677788877788888877655422 3344554
No 184
>PF15063 TC1: Thyroid cancer protein 1
Probab=28.91 E-value=58 Score=16.42 Aligned_cols=18 Identities=17% Similarity=0.281 Sum_probs=15.0
Q ss_pred cccHHHHHHHHhccCCcc
Q 048030 4 STTKEMLADAFSQFGQVT 21 (93)
Q Consensus 4 ~~~~~~l~~~f~~~g~i~ 21 (93)
+++...|+.+|..-|+..
T Consensus 36 ~vn~~qlqrLF~~sGD~k 53 (79)
T PF15063_consen 36 NVNLDQLQRLFQKSGDKK 53 (79)
T ss_pred ccCHHHHHHHHHHccchh
Confidence 578899999999988753
No 185
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=26.16 E-value=82 Score=15.31 Aligned_cols=17 Identities=18% Similarity=0.335 Sum_probs=14.1
Q ss_pred ccccHHHHHHHHhccCC
Q 048030 3 FSTTKEMLADAFSQFGQ 19 (93)
Q Consensus 3 ~~~~~~~l~~~f~~~g~ 19 (93)
+-++|+.|+..+...|.
T Consensus 30 Ppine~mir~M~~QMG~ 46 (64)
T PF03672_consen 30 PPINEKMIRAMMMQMGR 46 (64)
T ss_pred CCCCHHHHHHHHHHhCC
Confidence 45789999999998885
No 186
>KOG0862 consensus Synaptobrevin/VAMP-like protein SEC22 [Intracellular trafficking, secretion, and vesicular transport]
Probab=26.10 E-value=59 Score=19.87 Aligned_cols=12 Identities=33% Similarity=0.808 Sum_probs=9.3
Q ss_pred CcccEEEEEecC
Q 048030 33 RSKGYGYVTFST 44 (93)
Q Consensus 33 ~~~g~~fv~f~~ 44 (93)
..|.|+|++|.+
T Consensus 107 ~~RPY~FieFD~ 118 (216)
T KOG0862|consen 107 ASRPYAFIEFDT 118 (216)
T ss_pred cCCCeeEEehhH
Confidence 456799999964
No 187
>PF12829 Mhr1: Transcriptional regulation of mitochondrial recombination; InterPro: IPR024629 These proteins are involved in regulation of RNA polymerase II-dependent transcription. They are also involved in regulation of mitochondrial DNA recombination, maintenance, repair, and generation of homoplasmic cells [, , , ].
Probab=25.97 E-value=1.1e+02 Score=15.98 Aligned_cols=22 Identities=18% Similarity=0.206 Sum_probs=17.8
Q ss_pred ccEEEEEecCHHHHHHHHHHhC
Q 048030 35 KGYGYVTFSTEEEAQKALADMN 56 (93)
Q Consensus 35 ~g~~fv~f~~~~~a~~a~~~l~ 56 (93)
+.+|-|.|.+.+.+..|...|.
T Consensus 51 ~pm~vv~f~~~~~g~~~yq~Lr 72 (91)
T PF12829_consen 51 RPMCVVNFPNYEVGVSAYQKLR 72 (91)
T ss_pred eEeEEEECCChHHHHHHHHHHH
Confidence 3589999999999988877653
No 188
>KOG3432 consensus Vacuolar H+-ATPase V1 sector, subunit F [Energy production and conversion]
Probab=25.49 E-value=1e+02 Score=16.83 Aligned_cols=24 Identities=38% Similarity=0.468 Sum_probs=18.3
Q ss_pred ccccHHHHHHHHhccCCccEEEEe
Q 048030 3 FSTTKEMLADAFSQFGQVTEATII 26 (93)
Q Consensus 3 ~~~~~~~l~~~f~~~g~i~~~~~~ 26 (93)
..++.++|++.|..|-.-.++.|+
T Consensus 43 ~~Tt~~eiedaF~~f~~RdDIaIi 66 (121)
T KOG3432|consen 43 SKTTVEEIEDAFKSFTARDDIAII 66 (121)
T ss_pred ccCCHHHHHHHHHhhccccCeEEE
Confidence 467899999999998765555543
No 189
>PHA01782 hypothetical protein
Probab=25.27 E-value=65 Score=18.82 Aligned_cols=21 Identities=24% Similarity=0.474 Sum_probs=17.4
Q ss_pred CCccccHHHHHHHHhccCCcc
Q 048030 1 VSFSTTKEMLADAFSQFGQVT 21 (93)
Q Consensus 1 l~~~~~~~~l~~~f~~~g~i~ 21 (93)
||.......|.+.|..||.+.
T Consensus 63 MPKGsRrnAL~~wlv~~Gkv~ 83 (177)
T PHA01782 63 MPKGSRRNALAEWLVKFGKVQ 83 (177)
T ss_pred ccccchhhHHHHHHHHhCCcc
Confidence 466777889999999999874
No 190
>PF08206 OB_RNB: Ribonuclease B OB domain; InterPro: IPR013223 This domain includes the N-terminal OB domain found in ribonuclease B proteins in one or two copies.; PDB: 2ID0_D 2IX1_A 2IX0_A.
Probab=24.92 E-value=63 Score=14.91 Aligned_cols=11 Identities=36% Similarity=0.803 Sum_probs=8.0
Q ss_pred cccEEEEEecC
Q 048030 34 SKGYGYVTFST 44 (93)
Q Consensus 34 ~~g~~fv~f~~ 44 (93)
.+||+|+...+
T Consensus 7 ~~GfGFv~~~~ 17 (58)
T PF08206_consen 7 PKGFGFVIPDD 17 (58)
T ss_dssp SSS-EEEEECT
T ss_pred cCCCEEEEECC
Confidence 56899998876
No 191
>COG0225 MsrA Peptide methionine sulfoxide reductase [Posttranslational modification, protein turnover, chaperones]
Probab=24.36 E-value=1.6e+02 Score=17.39 Aligned_cols=26 Identities=8% Similarity=0.051 Sum_probs=14.5
Q ss_pred HHHHHHHHHhCCCeeCCeEEEEEecC
Q 048030 46 EEAQKALADMNGKLLDGRVIFVDNVR 71 (93)
Q Consensus 46 ~~a~~a~~~l~~~~~~g~~l~v~~~~ 71 (93)
..|.+.+..++.....+++|.++...
T Consensus 111 ~~a~~~~~~~q~~~~~~~~IvteI~p 136 (174)
T COG0225 111 AIAEASIEELQASGYFKKPIVTEIEP 136 (174)
T ss_pred HHHHHHHHHHHHhccCCCCeEEEeec
Confidence 34555566666645556566655443
No 192
>TIGR00405 L26e_arch ribosomal protein L24p/L26e, archaeal. This protein contains a KOW domain, shared by bacterial NusG and the L24p/L26e family of ribosomal proteins. Although called archaeal NusG in several publications, it is the only close homolog of eukaryotic L26e in archaeal genomes, shares an operon with L11 in many genomes, and has been sequenced from purified ribosomes. It is here designated as a ribosomal protein for these reasons.
Probab=23.59 E-value=1.2e+02 Score=16.88 Aligned_cols=26 Identities=19% Similarity=0.224 Sum_probs=20.0
Q ss_pred CcccEEEEEecCHHHHHHHHHHhCCC
Q 048030 33 RSKGYGYVTFSTEEEAQKALADMNGK 58 (93)
Q Consensus 33 ~~~g~~fv~f~~~~~a~~a~~~l~~~ 58 (93)
..+||-||......+...++..+.|.
T Consensus 36 ~fpGYvFV~~~~~~~~~~~i~~~~gv 61 (145)
T TIGR00405 36 SLKGYILVEAETKIDMRNPIIGVPHV 61 (145)
T ss_pred CCCcEEEEEEECcHHHHHHHhCCCCE
Confidence 47899999998777777777766654
No 193
>PHA02680 ORF090 IMV phosphorylated membrane protein; Provisional
Probab=23.41 E-value=8 Score=19.93 Aligned_cols=20 Identities=15% Similarity=0.400 Sum_probs=11.8
Q ss_pred EEEEEecCHH--HHHHHHHHhC
Q 048030 37 YGYVTFSTEE--EAQKALADMN 56 (93)
Q Consensus 37 ~~fv~f~~~~--~a~~a~~~l~ 56 (93)
|||++|+... ..+.+++++.
T Consensus 28 FAfidFSK~~s~~~~~~wRalS 49 (91)
T PHA02680 28 FAFVDFSKNTSNVTDYVWRALS 49 (91)
T ss_pred HhhhhhhccCCCCcchhHHHHH
Confidence 7899998644 2244444443
No 194
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=22.39 E-value=1.3e+02 Score=15.41 Aligned_cols=49 Identities=20% Similarity=0.332 Sum_probs=31.2
Q ss_pred CccccHHHHHHHHhc-cC-CccEEEEeecCCCCCcccEEEEEecCHHHHHHHHH
Q 048030 2 SFSTTKEMLADAFSQ-FG-QVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALA 53 (93)
Q Consensus 2 ~~~~~~~~l~~~f~~-~g-~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~ 53 (93)
+..++-.+|+..++. || .+..+..+..+ .+ .-=|||.+.....|.....
T Consensus 29 ~~~anK~eIK~AvE~lf~VkV~~VnT~~~~-~~--~KKA~V~L~~g~~A~~va~ 79 (84)
T PRK14548 29 DRRATKPDIKRAVEELFDVKVEKVNTLITP-KG--EKKAYVKLAEEYDAEEIAS 79 (84)
T ss_pred CCCCCHHHHHHHHHHHhCCceEEEEeEEcC-CC--cEEEEEEeCCCCcHHHHHH
Confidence 345677788888876 55 35566555443 22 2248999988777776544
No 195
>PRK00523 hypothetical protein; Provisional
Probab=22.36 E-value=1e+02 Score=15.33 Aligned_cols=17 Identities=24% Similarity=0.436 Sum_probs=14.1
Q ss_pred ccccHHHHHHHHhccCC
Q 048030 3 FSTTKEMLADAFSQFGQ 19 (93)
Q Consensus 3 ~~~~~~~l~~~f~~~g~ 19 (93)
+-++|+.|+..+...|.
T Consensus 38 Ppine~mir~M~~QMGq 54 (72)
T PRK00523 38 PPITENMIRAMYMQMGR 54 (72)
T ss_pred cCCCHHHHHHHHHHhCC
Confidence 45789999999998885
No 196
>PF09341 Pcc1: Transcription factor Pcc1; InterPro: IPR015419 Pcc1 is a proposed transcription factor involved in the expression of genes regulated by alpha-factor and galactose; component of the EKC/KEOPS protein complex with Kae1, Gon7, Bud32, and Cgi121; related to human cancer-testis antigens [].; PDB: 2BNR_C 2P5W_C 3KLA_C 2F54_C 2P5E_C 2F53_C 3ENO_E 3ENC_B.
Probab=22.25 E-value=1.1e+02 Score=14.80 Aligned_cols=20 Identities=20% Similarity=0.268 Sum_probs=14.8
Q ss_pred EEEEEecCHHHHHHHHHHhC
Q 048030 37 YGYVTFSTEEEAQKALADMN 56 (93)
Q Consensus 37 ~~fv~f~~~~~a~~a~~~l~ 56 (93)
-.-+.|.+++.|..+...|.
T Consensus 4 ~l~i~f~s~~~A~ii~~sL~ 23 (76)
T PF09341_consen 4 TLEIPFESEEKAEIIYRSLK 23 (76)
T ss_dssp EEEEE-SSHHHHHHHHHHHH
T ss_pred EEEEEeCCHHHHHHHHHHhC
Confidence 45689999999998877653
No 197
>PF08156 NOP5NT: NOP5NT (NUC127) domain; InterPro: IPR012974 This N-terminal domain is found in RNA-binding proteins of the NOP5 family [].
Probab=22.08 E-value=76 Score=15.34 Aligned_cols=19 Identities=21% Similarity=0.366 Sum_probs=15.2
Q ss_pred EEEEEecCHHHHHHHHHHh
Q 048030 37 YGYVTFSTEEEAQKALADM 55 (93)
Q Consensus 37 ~~fv~f~~~~~a~~a~~~l 55 (93)
.+|..|.+..+|...+..+
T Consensus 46 ~aF~pF~s~~~ALe~~~ai 64 (67)
T PF08156_consen 46 KAFSPFKSAEEALENANAI 64 (67)
T ss_pred hhccCCCCHHHHHHHHHHh
Confidence 5799999998888877654
No 198
>TIGR01639 P_fal_TIGR01639 Plasmodium falciparum uncharacterized domain TIGR01639. This model represents a conserved sequence region of about 60 amino acids found in over 40 predicted proteins of Plasmodium falciparum. It is not found elsewhere, including closely related species such as Plasmodium yoelii. No member of this family is characterized.
Probab=21.87 E-value=60 Score=15.34 Aligned_cols=20 Identities=20% Similarity=0.307 Sum_probs=14.8
Q ss_pred CccccHHHHHHHHhccCCcc
Q 048030 2 SFSTTKEMLADAFSQFGQVT 21 (93)
Q Consensus 2 ~~~~~~~~l~~~f~~~g~i~ 21 (93)
...+|+++|.+.....+.+.
T Consensus 7 s~~lTeEEl~~~i~~L~~~~ 26 (61)
T TIGR01639 7 SKKLSKEELNELINSLDEIP 26 (61)
T ss_pred hHHccHHHHHHHHHhhcCCC
Confidence 45678888888888876553
No 199
>PRK04405 prsA peptidylprolyl isomerase; Provisional
Probab=21.56 E-value=2.3e+02 Score=18.06 Aligned_cols=40 Identities=13% Similarity=0.228 Sum_probs=26.9
Q ss_pred cccHHHHHHHHhccCCccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCC
Q 048030 4 STTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNG 57 (93)
Q Consensus 4 ~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~ 57 (93)
.+++++++.+|..+..-.+ ...|.+.+...|..++..+..
T Consensus 128 ~Vtd~ei~~~y~~~~~~~~--------------v~hIlv~~~~~A~~v~~~l~~ 167 (298)
T PRK04405 128 KVTNSQLKKAWKSYQPKVT--------------VQHILVSKKSTAETVIKKLKD 167 (298)
T ss_pred CCCHHHHHHHHHHhhhhEE--------------EEEEEecChHHHHHHHHHHHC
Confidence 4689999999987533111 245666677888888877654
No 200
>PRK08559 nusG transcription antitermination protein NusG; Validated
Probab=21.45 E-value=1.5e+02 Score=16.81 Aligned_cols=25 Identities=20% Similarity=0.288 Sum_probs=20.1
Q ss_pred cccEEEEEecCHHHHHHHHHHhCCC
Q 048030 34 SKGYGYVTFSTEEEAQKALADMNGK 58 (93)
Q Consensus 34 ~~g~~fv~f~~~~~a~~a~~~l~~~ 58 (93)
..||.||.....+++-.++..+.+.
T Consensus 45 fpGYVfVe~~~~~~~~~~i~~v~~v 69 (153)
T PRK08559 45 LKGYVLVEAESKGAVEEAIRGIPHV 69 (153)
T ss_pred CCcEEEEEEEChHHHHHHHhcCCCE
Confidence 6799999998778888888776654
No 201
>COG4009 Uncharacterized protein conserved in archaea [Function unknown]
Probab=20.55 E-value=81 Score=16.11 Aligned_cols=17 Identities=12% Similarity=0.235 Sum_probs=13.3
Q ss_pred ccccHHHHHHHHhccCC
Q 048030 3 FSTTKEMLADAFSQFGQ 19 (93)
Q Consensus 3 ~~~~~~~l~~~f~~~g~ 19 (93)
...+++++++.|...|.
T Consensus 58 ~~~s~eev~~ele~mga 74 (88)
T COG4009 58 EVESEEEVERELEDMGA 74 (88)
T ss_pred ccCCHHHHHHHHHHhCc
Confidence 45678899999988774
No 202
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=20.48 E-value=73 Score=20.52 Aligned_cols=19 Identities=16% Similarity=0.301 Sum_probs=15.2
Q ss_pred cccHHHHHHHHhccCCccE
Q 048030 4 STTKEMLADAFSQFGQVTE 22 (93)
Q Consensus 4 ~~~~~~l~~~f~~~g~i~~ 22 (93)
.+++++|..+|..||+...
T Consensus 140 ~~~e~~L~~i~~~yGEe~~ 158 (305)
T TIGR00006 140 TYSEEDLERILKKYGEEKF 158 (305)
T ss_pred hCCHHHHHHHHHHhcCcch
Confidence 4688999999999996643
Done!