Query 048030
Match_columns 93
No_of_seqs 124 out of 1346
Neff 10.6
Searched_HMMs 29240
Date Mon Mar 25 09:24:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048030.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/048030hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fxv_A ELAV-like protein 1; RN 99.9 1E-23 3.6E-28 110.1 9.8 72 1-72 27-98 (99)
2 2lxi_A RNA-binding protein 10; 99.9 2.6E-23 8.8E-28 107.1 6.6 77 1-77 9-87 (91)
3 2dgo_A Cytotoxic granule-assoc 99.9 8.4E-22 2.9E-26 105.1 12.7 80 1-80 23-102 (115)
4 3s8s_A Histone-lysine N-methyl 99.9 5.1E-22 1.7E-26 105.5 10.1 75 1-75 14-88 (110)
5 3md1_A Nuclear and cytoplasmic 99.9 1.3E-21 4.5E-26 98.9 10.4 74 1-74 9-82 (83)
6 1whw_A Hypothetical protein ri 99.9 1.3E-21 4.4E-26 101.9 10.2 78 1-78 16-93 (99)
7 3bs9_A Nucleolysin TIA-1 isofo 99.9 1.3E-21 4.4E-26 99.7 9.9 73 1-73 14-86 (87)
8 2lkz_A RNA-binding protein 5; 99.9 2.4E-22 8.1E-27 104.2 7.0 72 1-72 17-94 (95)
9 3p5t_L Cleavage and polyadenyl 99.9 2.5E-22 8.4E-27 103.2 6.7 75 1-75 9-85 (90)
10 2do0_A HnRNP M, heterogeneous 99.9 8.4E-21 2.9E-25 101.0 12.5 78 1-79 23-100 (114)
11 2cpz_A CUG triplet repeat RNA- 99.9 3.3E-21 1.1E-25 102.8 10.7 77 1-77 33-109 (115)
12 2dnz_A Probable RNA-binding pr 99.9 3.4E-21 1.2E-25 99.6 10.3 78 1-78 13-90 (95)
13 2cq0_A Eukaryotic translation 99.9 2.7E-21 9.2E-26 101.4 9.5 77 1-77 23-99 (103)
14 2cqb_A Peptidyl-prolyl CIS-tra 99.9 2.4E-21 8.4E-26 101.3 9.2 78 1-78 20-97 (102)
15 1x5t_A Splicing factor 3B subu 99.9 3.1E-21 1.1E-25 99.9 9.4 77 1-77 13-90 (96)
16 2do4_A Squamous cell carcinoma 99.9 5.1E-21 1.7E-25 99.8 10.2 75 1-76 25-99 (100)
17 2dgs_A DAZ-associated protein 99.9 5.8E-21 2E-25 99.4 9.9 76 1-77 18-93 (99)
18 2fy1_A RNA-binding motif prote 99.9 8.5E-21 2.9E-25 101.5 10.8 76 1-77 15-90 (116)
19 3mdf_A Peptidyl-prolyl CIS-tra 99.9 3.3E-21 1.1E-25 97.8 8.7 71 1-71 15-85 (85)
20 1u6f_A Tcubp1, RNA-binding pro 99.9 1.1E-20 3.9E-25 103.6 11.3 78 1-78 50-127 (139)
21 1p27_B RNA-binding protein 8A; 99.9 4.3E-21 1.5E-25 101.0 9.2 74 1-74 31-104 (106)
22 2x1f_A MRNA 3'-END-processing 99.9 6.2E-21 2.1E-25 98.9 9.5 76 1-76 10-85 (96)
23 1x5s_A Cold-inducible RNA-bind 99.9 4.3E-21 1.5E-25 100.4 8.8 77 1-77 20-96 (102)
24 4f25_A Polyadenylate-binding p 99.9 7.4E-21 2.5E-25 101.6 9.9 75 1-77 13-87 (115)
25 2cqc_A Arginine/serine-rich sp 99.9 8.5E-21 2.9E-25 98.0 9.8 72 1-72 23-94 (95)
26 2cqd_A RNA-binding region cont 99.9 1.6E-20 5.3E-25 100.3 10.8 76 1-77 25-100 (116)
27 2cpf_A RNA binding motif prote 99.9 7.8E-21 2.7E-25 98.8 9.4 77 1-77 13-92 (98)
28 1x5u_A Splicing factor 3B subu 99.9 7.5E-21 2.6E-25 99.9 9.1 77 1-77 23-99 (105)
29 1oo0_B CG8781-PA, drosophila Y 99.9 7.3E-21 2.5E-25 100.7 9.0 75 1-75 34-108 (110)
30 1x4h_A RNA-binding protein 28; 99.9 9.8E-21 3.4E-25 100.3 9.4 77 1-77 23-105 (111)
31 2dnm_A SRP46 splicing factor; 99.9 4.4E-21 1.5E-25 100.5 7.9 77 1-77 21-97 (103)
32 2kxn_B Transformer-2 protein h 99.9 6E-21 2.1E-25 103.8 8.6 75 1-75 54-128 (129)
33 2dgp_A Bruno-like 4, RNA bindi 99.9 8.5E-21 2.9E-25 99.9 8.9 77 1-77 21-100 (106)
34 3ucg_A Polyadenylate-binding p 99.9 1.3E-20 4.5E-25 96.3 9.4 72 1-73 14-85 (89)
35 2jrs_A RNA-binding protein 39; 99.9 8.3E-21 2.8E-25 100.4 8.9 74 1-74 34-107 (108)
36 2cpe_A RNA-binding protein EWS 99.9 1.2E-20 4E-25 100.4 9.5 78 1-78 23-108 (113)
37 2la6_A RNA-binding protein FUS 99.9 1.1E-20 3.8E-25 98.4 9.2 71 1-71 21-99 (99)
38 2e5h_A Zinc finger CCHC-type a 99.9 1E-20 3.4E-25 97.6 8.9 71 1-71 24-94 (94)
39 1p1t_A Cleavage stimulation fa 99.8 1.7E-21 5.9E-26 102.2 5.9 77 1-77 16-92 (104)
40 2div_A TRNA selenocysteine ass 99.8 1.2E-20 4.2E-25 98.2 9.0 75 1-75 17-96 (99)
41 2cph_A RNA binding motif prote 99.8 1.5E-20 5.2E-25 99.0 9.3 77 1-77 23-101 (107)
42 2dng_A Eukaryotic translation 99.8 2.5E-20 8.6E-25 97.7 10.0 75 1-77 23-97 (103)
43 2dnh_A Bruno-like 5, RNA bindi 99.8 2.6E-20 8.9E-25 97.8 9.9 77 1-78 23-102 (105)
44 4a8x_A RNA-binding protein wit 99.8 1.2E-20 4.1E-25 96.2 8.3 74 1-74 12-86 (88)
45 3ns6_A Eukaryotic translation 99.8 2.9E-21 1E-25 100.9 6.0 73 1-73 14-93 (100)
46 2d9p_A Polyadenylate-binding p 99.8 2.3E-20 7.8E-25 97.8 9.4 76 1-78 23-98 (103)
47 2kn4_A Immunoglobulin G-bindin 99.8 1.5E-20 5E-25 105.1 9.0 77 1-77 78-154 (158)
48 1wi8_A EIF-4B, eukaryotic tran 99.8 2.2E-20 7.7E-25 98.0 9.1 76 1-78 23-99 (104)
49 3n9u_C Cleavage and polyadenyl 99.8 2.2E-20 7.6E-25 104.4 9.6 73 1-73 63-137 (156)
50 2m2b_A RNA-binding protein 10; 99.8 5.1E-21 1.7E-25 104.2 6.7 77 1-78 31-113 (131)
51 2dhg_A TRNA selenocysteine ass 99.8 2E-20 7E-25 98.1 8.8 77 1-78 17-95 (104)
52 1h2v_Z 20 kDa nuclear CAP bind 99.8 5.1E-20 1.7E-24 102.8 10.8 76 1-76 47-122 (156)
53 3ulh_A THO complex subunit 4; 99.8 4.3E-20 1.5E-24 97.3 9.8 70 1-71 37-106 (107)
54 3ex7_B RNA-binding protein 8A; 99.8 1.5E-20 5.1E-25 101.6 8.2 77 1-77 30-106 (126)
55 2cqp_A RNA-binding protein 12; 99.8 1.9E-20 6.3E-25 97.3 8.2 73 1-73 23-95 (98)
56 2jwn_A Embryonic polyadenylate 99.8 5.3E-20 1.8E-24 99.2 10.2 74 1-75 44-117 (124)
57 2ywk_A Putative RNA-binding pr 99.8 3.7E-20 1.3E-24 95.7 9.1 71 1-72 24-94 (95)
58 2dgx_A KIAA0430 protein; RRM d 99.8 5E-20 1.7E-24 95.5 9.6 72 1-75 17-92 (96)
59 2kt5_A RNA and export factor-b 99.8 1.1E-19 3.8E-24 98.0 10.9 75 1-76 43-117 (124)
60 2ek1_A RNA-binding protein 12; 99.8 2.1E-20 7.3E-25 96.6 7.6 72 1-72 23-94 (95)
61 2cqi_A Nucleolysin TIAR; RNA r 99.8 1.3E-19 4.3E-24 94.9 10.6 75 1-77 23-97 (103)
62 2khc_A Testis-specific RNP-typ 99.8 1.3E-20 4.4E-25 100.9 6.9 71 1-71 48-118 (118)
63 1x4b_A Heterogeneous nuclear r 99.8 7.4E-20 2.5E-24 97.7 9.7 76 1-77 35-110 (116)
64 2dh8_A DAZ-associated protein 99.8 3.6E-20 1.2E-24 97.4 8.3 76 1-77 24-99 (105)
65 2cq3_A RNA-binding protein 9; 99.8 1.9E-19 6.4E-24 94.3 11.0 76 1-78 23-98 (103)
66 2mss_A Protein (musashi1); RNA 99.8 1.2E-20 4.1E-25 93.7 6.1 69 1-70 7-75 (75)
67 2dis_A Unnamed protein product 99.8 7.2E-20 2.5E-24 96.7 9.2 78 1-78 16-97 (109)
68 2dgw_A Probable RNA-binding pr 99.8 1.2E-19 4.3E-24 93.1 9.8 72 1-75 18-89 (91)
69 2rs2_A Musashi-1, RNA-binding 99.8 9.9E-20 3.4E-24 96.4 9.4 75 1-76 33-107 (109)
70 2cq4_A RNA binding motif prote 99.8 8.3E-21 2.9E-25 101.1 5.0 75 1-76 33-107 (114)
71 2dgv_A HnRNP M, heterogeneous 99.8 1.2E-19 4.1E-24 93.2 9.0 74 1-76 16-89 (92)
72 1rk8_A CG8781-PA, CG8781-PA pr 99.8 1.2E-19 4.2E-24 102.1 9.5 77 1-77 80-156 (165)
73 2lea_A Serine/arginine-rich sp 99.8 3.2E-20 1.1E-24 101.6 6.8 77 1-77 55-131 (135)
74 3s7r_A Heterogeneous nuclear r 99.8 1.7E-19 6E-24 91.8 9.0 69 1-70 19-87 (87)
75 2cqg_A TDP-43, TAR DNA-binding 99.8 4.6E-19 1.6E-23 92.8 10.8 75 1-77 23-97 (103)
76 2cpi_A CCR4-NOT transcription 99.8 1E-19 3.5E-24 96.6 8.0 75 1-75 23-103 (111)
77 2ki2_A SS-DNA binding protein 99.8 1.1E-20 3.6E-25 96.9 4.1 74 1-75 9-82 (90)
78 1s79_A Lupus LA protein; RRM, 99.8 8.5E-20 2.9E-24 95.8 7.5 70 1-72 19-88 (103)
79 1sjq_A Polypyrimidine tract-bi 99.8 1.2E-19 4.2E-24 95.3 7.9 73 1-79 24-98 (105)
80 2j76_E EIF-4B, EIF4B, eukaryot 99.8 2.2E-20 7.6E-25 97.5 5.0 72 1-74 27-99 (100)
81 2hvz_A Splicing factor, argini 99.8 2.2E-19 7.6E-24 93.7 8.8 73 1-78 8-80 (101)
82 1x4a_A Splicing factor, argini 99.8 5.4E-19 1.9E-23 93.4 10.2 74 1-77 30-103 (109)
83 1uaw_A Mouse-musashi-1; RNP-ty 99.8 5.6E-20 1.9E-24 91.6 5.6 69 1-70 8-76 (77)
84 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.8 1.8E-19 6.1E-24 98.8 8.1 70 1-70 71-140 (140)
85 1x4e_A RNA binding motif, sing 99.8 1.3E-20 4.3E-25 95.7 3.1 71 1-71 13-83 (85)
86 2wbr_A GW182, gawky, LD47780P; 99.8 2E-19 6.9E-24 91.2 7.4 64 1-70 15-78 (89)
87 3q2s_C Cleavage and polyadenyl 99.8 1.3E-19 4.3E-24 106.8 7.4 71 1-71 76-148 (229)
88 2err_A Ataxin-2-binding protei 99.8 3.3E-19 1.1E-23 94.4 8.3 71 1-73 37-107 (109)
89 2dgu_A Heterogeneous nuclear r 99.8 1.5E-18 5E-23 90.9 10.7 71 1-79 19-89 (103)
90 1x5o_A RNA binding motif, sing 99.8 4.6E-19 1.6E-23 94.3 8.5 72 1-73 33-112 (114)
91 1why_A Hypothetical protein ri 99.8 7.2E-19 2.5E-23 91.2 8.6 69 1-75 25-95 (97)
92 2fc9_A NCL protein; structure 99.8 6.2E-19 2.1E-23 92.0 8.5 73 1-77 23-95 (101)
93 1x4g_A Nucleolysin TIAR; struc 99.8 1.1E-18 3.8E-23 92.2 9.5 71 1-77 33-103 (109)
94 2db1_A Heterogeneous nuclear r 99.8 4.4E-19 1.5E-23 95.1 8.0 71 1-73 25-98 (118)
95 1x4c_A Splicing factor, argini 99.8 2.5E-18 8.5E-23 90.8 10.8 70 1-77 23-97 (108)
96 2fc8_A NCL protein; structure 99.8 1.4E-18 4.7E-23 90.8 9.7 75 1-78 23-97 (102)
97 2dnq_A RNA-binding protein 4B; 99.8 1.6E-18 5.5E-23 88.8 9.6 69 1-77 16-84 (90)
98 1wez_A HnRNP H', FTP-3, hetero 99.8 3.7E-19 1.3E-23 93.2 7.3 72 1-75 23-94 (102)
99 2lcw_A RNA-binding protein FUS 99.7 5.3E-21 1.8E-25 102.2 0.0 79 1-79 15-101 (116)
100 2qfj_A FBP-interacting repress 99.8 1.5E-18 5.2E-23 100.6 10.4 76 1-76 133-208 (216)
101 2ad9_A Polypyrimidine tract-bi 99.8 1.1E-18 3.9E-23 93.5 9.0 72 1-78 39-112 (119)
102 2jvr_A Nucleolar protein 3; RN 99.8 6.1E-19 2.1E-23 93.6 7.7 70 1-74 36-106 (111)
103 2hgl_A HNRPF protein, heteroge 99.8 4E-19 1.4E-23 97.3 7.1 70 1-72 52-124 (136)
104 2cpy_A RNA-binding protein 12; 99.8 4.4E-19 1.5E-23 94.5 7.0 72 1-74 23-95 (114)
105 3md3_A Nuclear and cytoplasmic 99.8 2.1E-18 7.1E-23 96.3 10.0 72 1-72 95-166 (166)
106 3r27_A HnRNP L, heterogeneous 99.8 1.5E-18 5E-23 90.4 8.6 68 1-74 29-98 (100)
107 2nlw_A Eukaryotic translation 99.8 5.3E-19 1.8E-23 93.0 7.0 73 1-75 23-102 (105)
108 2dgt_A RNA-binding protein 30; 99.8 5.2E-18 1.8E-22 87.2 10.5 70 1-78 18-87 (92)
109 1fj7_A Nucleolin RBD1, protein 99.8 5.5E-20 1.9E-24 96.0 3.1 74 1-76 25-98 (101)
110 1iqt_A AUF1, heterogeneous nuc 99.8 1.6E-19 5.5E-24 89.6 4.6 69 1-70 7-75 (75)
111 2jvo_A Nucleolar protein 3; nu 99.8 2.2E-18 7.5E-23 91.1 8.7 68 1-76 39-106 (108)
112 2cpx_A Hypothetical protein FL 99.8 2.1E-19 7.1E-24 95.7 4.8 78 1-78 33-110 (115)
113 2cq1_A PTB-like protein L; RRM 99.8 4.2E-18 1.4E-22 89.1 9.5 71 1-77 23-95 (101)
114 2dnn_A RNA-binding protein 12; 99.8 2.5E-18 8.4E-23 91.1 8.7 69 1-72 24-92 (109)
115 1wg5_A Heterogeneous nuclear r 99.8 1.6E-18 5.5E-23 91.0 7.9 72 1-74 23-95 (104)
116 1fxl_A Paraneoplastic encephal 99.8 5E-18 1.7E-22 94.8 10.4 75 1-75 10-84 (167)
117 1wel_A RNA-binding protein 12; 99.8 2.5E-19 8.4E-24 96.7 4.8 72 1-73 33-104 (124)
118 1wex_A Hypothetical protein (r 99.8 2.8E-18 9.4E-23 90.2 8.6 70 1-76 23-94 (104)
119 2yh0_A Splicing factor U2AF 65 99.8 3.1E-18 1E-22 98.2 9.2 75 1-75 122-196 (198)
120 2j8a_A Histone-lysine N-methyl 99.8 2E-18 6.8E-23 93.0 7.8 71 2-72 15-95 (136)
121 2la4_A Nuclear and cytoplasmic 99.8 1.9E-18 6.4E-23 90.2 7.5 67 1-73 35-101 (101)
122 2f3j_A RNA and export factor b 99.8 2.1E-18 7.1E-23 98.2 8.2 74 1-75 96-169 (177)
123 1b7f_A Protein (SXL-lethal pro 99.8 4.9E-18 1.7E-22 95.1 9.7 76 1-76 11-86 (168)
124 2cpj_A Non-POU domain-containi 99.8 3.5E-18 1.2E-22 88.9 8.4 70 1-76 23-92 (99)
125 1x4d_A Matrin 3; structural ge 99.8 1.3E-18 4.3E-23 91.1 6.7 69 1-75 23-94 (102)
126 2a3j_A U1 small nuclear ribonu 99.8 2.2E-18 7.5E-23 93.4 7.8 72 1-75 37-112 (127)
127 2e5j_A Methenyltetrahydrofolat 99.8 2.9E-18 9.9E-23 88.9 8.0 70 1-75 27-96 (97)
128 3pgw_S U1-70K; protein-RNA com 99.8 4.9E-18 1.7E-22 107.8 10.6 75 1-75 110-184 (437)
129 4f02_A Polyadenylate-binding p 99.8 6.8E-18 2.3E-22 98.2 10.3 74 1-74 23-96 (213)
130 2g4b_A Splicing factor U2AF 65 99.8 3.8E-18 1.3E-22 95.9 8.8 70 1-70 102-171 (172)
131 2cqh_A IGF-II mRNA-binding pro 99.8 5.3E-18 1.8E-22 87.3 8.3 71 1-78 16-88 (93)
132 1fjc_A Nucleolin RBD2, protein 99.8 1.9E-18 6.4E-23 89.4 6.6 71 1-76 24-94 (96)
133 2cjk_A Nuclear polyadenylated 99.8 2E-18 6.9E-23 96.6 7.2 72 1-73 95-166 (167)
134 2dnp_A RNA-binding protein 14; 99.8 9.3E-18 3.2E-22 85.9 9.1 68 1-76 17-84 (90)
135 1nu4_A U1A RNA binding domain; 99.8 2E-18 6.8E-23 89.4 6.6 72 1-75 16-91 (97)
136 2xs2_A Deleted in azoospermia- 99.8 1.4E-18 4.7E-23 90.8 5.9 73 1-76 17-89 (102)
137 2krb_A Eukaryotic translation 99.8 7.7E-19 2.6E-23 88.4 4.6 65 1-67 9-80 (81)
138 2xnq_A Nuclear polyadenylated 99.8 1.2E-17 4.1E-22 86.7 9.3 66 1-74 30-96 (97)
139 1l3k_A Heterogeneous nuclear r 99.8 7.8E-18 2.7E-22 96.3 9.4 77 1-78 112-188 (196)
140 3lqv_A PRE-mRNA branch site pr 99.8 7.3E-18 2.5E-22 89.8 8.6 72 1-75 16-87 (115)
141 2cpd_A Apobec-1 stimulating pr 99.8 1.9E-17 6.6E-22 86.0 10.0 68 1-76 23-92 (99)
142 4f02_A Polyadenylate-binding p 99.8 6.2E-18 2.1E-22 98.4 9.0 72 1-74 111-182 (213)
143 2e5g_A U6 snRNA-specific termi 99.8 8.1E-18 2.8E-22 86.8 8.4 69 1-75 16-84 (94)
144 2lmi_A GRSF-1, G-rich sequence 99.8 6.3E-19 2.2E-23 93.0 4.3 71 1-73 19-92 (107)
145 2ytc_A PRE-mRNA-splicing facto 99.8 9E-18 3.1E-22 85.0 8.3 65 1-71 20-85 (85)
146 2i2y_A Fusion protein consists 99.8 3.5E-18 1.2E-22 94.8 7.3 69 1-74 81-149 (150)
147 1wf1_A RNA-binding protein RAL 99.8 1.1E-17 3.8E-22 88.5 8.7 67 1-75 35-102 (110)
148 2kvi_A Nuclear polyadenylated 99.8 6.8E-18 2.3E-22 87.4 7.6 70 1-78 18-88 (96)
149 3zzy_A Polypyrimidine tract-bi 99.7 2.3E-17 7.9E-22 89.5 9.8 69 1-74 36-107 (130)
150 3egn_A RNA-binding protein 40; 99.7 1.5E-18 5.2E-23 95.6 5.1 76 1-77 53-134 (143)
151 2hgn_A Heterogeneous nuclear r 99.7 9E-19 3.1E-23 96.2 4.0 72 1-75 54-125 (139)
152 1sjr_A Polypyrimidine tract-bi 99.7 1.3E-17 4.6E-22 93.4 8.8 70 1-74 54-125 (164)
153 1jmt_A Splicing factor U2AF 35 99.7 3.5E-18 1.2E-22 89.8 5.9 61 9-70 42-103 (104)
154 1whx_A Hypothetical protein ri 99.7 1.6E-17 5.5E-22 88.1 8.3 68 1-74 18-85 (111)
155 2pe8_A Splicing factor 45; RRM 99.7 3.7E-17 1.3E-21 86.0 9.4 67 6-72 26-93 (105)
156 3md3_A Nuclear and cytoplasmic 99.7 3.7E-17 1.3E-21 91.2 9.9 74 1-75 8-81 (166)
157 1x5p_A Negative elongation fac 99.7 3.8E-17 1.3E-21 84.7 8.9 68 4-77 24-91 (97)
158 1b7f_A Protein (SXL-lethal pro 99.7 2.9E-17 1E-21 91.9 9.0 70 1-70 97-168 (168)
159 2qfj_A FBP-interacting repress 99.7 2.1E-17 7.3E-22 95.7 8.5 74 1-74 36-109 (216)
160 2cq2_A Hypothetical protein LO 99.7 1.7E-17 5.9E-22 88.2 7.3 69 1-75 35-108 (114)
161 2dha_A FLJ20171 protein; RRM d 99.7 9.6E-18 3.3E-22 90.4 6.3 71 1-73 31-105 (123)
162 2e44_A Insulin-like growth fac 99.7 2.6E-17 8.8E-22 85.1 7.6 69 1-73 23-92 (96)
163 1l3k_A Heterogeneous nuclear r 99.7 5.9E-17 2E-21 92.7 9.8 74 1-75 21-94 (196)
164 1fxl_A Paraneoplastic encephal 99.7 5.2E-17 1.8E-21 90.7 9.0 70 1-70 96-167 (167)
165 3beg_B Splicing factor, argini 99.7 3.4E-17 1.2E-21 87.3 7.8 68 1-75 24-96 (115)
166 1x4f_A Matrin 3; structural ge 99.7 1.4E-17 4.7E-22 88.4 6.2 71 1-77 33-106 (112)
167 2e5i_A Heterogeneous nuclear r 99.7 8.7E-17 3E-21 86.7 9.4 68 1-74 33-103 (124)
168 1wg1_A KIAA1579 protein, homol 99.7 5.2E-17 1.8E-21 82.8 8.1 67 1-74 13-79 (88)
169 3nmr_A Cugbp ELAV-like family 99.7 7.7E-17 2.6E-21 90.6 9.0 70 1-71 103-175 (175)
170 2hgm_A HNRPF protein, heteroge 99.7 1.6E-17 5.6E-22 89.8 4.8 69 1-72 50-120 (126)
171 3tyt_A Heterogeneous nuclear r 99.7 1.2E-16 4.1E-21 92.7 8.8 69 1-74 12-81 (205)
172 3v4m_A Splicing factor U2AF 65 99.7 1.6E-16 5.5E-21 83.6 8.1 67 6-72 28-96 (105)
173 2ghp_A U4/U6 snRNA-associated 99.7 9.2E-17 3.1E-21 97.0 8.1 73 1-74 218-292 (292)
174 2d9o_A DNAJ (HSP40) homolog, s 99.7 2.6E-16 9E-21 82.0 8.6 66 3-75 27-92 (100)
175 2bz2_A Negative elongation fac 99.7 1.7E-16 5.7E-21 85.4 8.1 67 4-76 48-114 (121)
176 3smz_A Protein raver-1, ribonu 99.7 5.1E-16 1.7E-20 93.4 10.7 75 1-75 103-177 (284)
177 1fje_B Nucleolin RBD12, protei 99.7 1.5E-16 5.2E-21 89.6 7.9 68 1-73 107-174 (175)
178 2voo_A Lupus LA protein; RNA-b 99.7 3.4E-16 1.2E-20 90.1 9.3 71 1-73 117-187 (193)
179 3smz_A Protein raver-1, ribonu 99.7 3.2E-16 1.1E-20 94.2 9.6 74 1-75 192-266 (284)
180 2diu_A KIAA0430 protein; struc 99.7 5.3E-16 1.8E-20 79.5 8.4 67 1-77 17-88 (96)
181 3nmr_A Cugbp ELAV-like family 99.7 3.4E-16 1.2E-20 88.0 8.5 74 1-74 11-89 (175)
182 3d2w_A TAR DNA-binding protein 99.7 3.3E-16 1.1E-20 80.1 7.6 66 1-75 19-86 (89)
183 2dit_A HIV TAT specific factor 99.7 1.1E-15 3.8E-20 81.1 9.5 68 6-77 39-106 (112)
184 2dnl_A Cytoplasmic polyadenyla 99.7 2.9E-16 1E-20 83.5 7.1 65 1-68 16-83 (114)
185 3ue2_A Poly(U)-binding-splicin 99.7 5E-16 1.7E-20 83.2 7.8 66 7-72 39-108 (118)
186 3pgw_A U1-A; protein-RNA compl 99.7 7.9E-16 2.7E-20 92.5 9.2 71 1-74 17-91 (282)
187 2hzc_A Splicing factor U2AF 65 99.7 6.7E-16 2.3E-20 78.3 7.3 62 1-69 14-86 (87)
188 2cjk_A Nuclear polyadenylated 99.7 4.1E-16 1.4E-20 87.2 6.8 71 1-73 11-81 (167)
189 1wf0_A TDP-43, TAR DNA-binding 99.6 3.5E-16 1.2E-20 79.7 5.3 70 1-77 13-82 (88)
190 3u1l_A PRE-mRNA-splicing facto 99.6 9.8E-16 3.3E-20 90.6 7.4 65 6-76 156-232 (240)
191 3pgw_A U1-A; protein-RNA compl 99.6 2.1E-15 7.3E-20 90.6 9.0 66 1-71 215-281 (282)
192 2adc_A Polypyrimidine tract-bi 99.6 1.4E-15 4.9E-20 89.3 7.6 68 1-73 42-110 (229)
193 2ghp_A U4/U6 snRNA-associated 99.6 3.1E-15 1.1E-19 90.3 8.1 75 1-76 125-200 (292)
194 3s6e_A RNA-binding protein 39; 99.6 4E-15 1.4E-19 79.2 7.6 61 7-71 31-91 (114)
195 1qm9_A Polypyrimidine tract-bi 99.6 2.1E-15 7E-20 86.6 6.8 68 1-73 11-79 (198)
196 3sde_A Paraspeckle component 1 99.6 9.5E-15 3.3E-19 87.2 8.9 74 1-75 104-181 (261)
197 1qm9_A Polypyrimidine tract-bi 99.6 4.1E-15 1.4E-19 85.3 7.0 68 1-73 128-197 (198)
198 1fje_B Nucleolin RBD12, protei 99.6 7.4E-16 2.5E-20 86.8 3.6 73 1-75 21-93 (175)
199 3tyt_A Heterogeneous nuclear r 99.6 6.2E-15 2.1E-19 85.5 7.2 68 1-70 131-204 (205)
200 2adc_A Polypyrimidine tract-bi 99.6 1.2E-14 4.1E-19 85.3 8.2 68 1-73 159-228 (229)
201 3sde_A Paraspeckle component 1 99.6 2.8E-14 9.7E-19 85.2 9.2 67 1-73 30-96 (261)
202 2yh0_A Splicing factor U2AF 65 99.5 1E-13 3.5E-18 79.2 9.6 67 1-74 12-89 (198)
203 2g4b_A Splicing factor U2AF 65 99.5 7.9E-14 2.7E-18 78.2 8.1 67 1-74 12-89 (172)
204 3tht_A Alkylated DNA repair pr 99.4 4.9E-13 1.7E-17 82.7 7.0 65 1-71 28-97 (345)
205 2dnr_A Synaptojanin-1; RRM dom 99.4 1.3E-12 4.3E-17 66.4 7.2 57 8-73 30-86 (91)
206 3dxb_A Thioredoxin N-terminall 99.4 3E-12 1E-16 74.8 8.4 66 6-71 142-211 (222)
207 1ufw_A Synaptojanin 2; RNP dom 99.3 1.1E-11 3.9E-16 63.2 5.9 55 8-71 39-93 (95)
208 1owx_A Lupus LA protein, SS-B, 99.1 2.4E-10 8.2E-15 61.2 6.6 65 1-71 26-94 (121)
209 2l9w_A U4/U6 snRNA-associated- 98.9 3.6E-08 1.2E-12 51.5 8.2 63 1-69 29-96 (117)
210 1whv_A Poly(A)-specific ribonu 98.0 2.9E-05 9.8E-10 39.8 6.2 48 1-56 23-70 (100)
211 1wey_A Calcipressin 1; structu 98.0 0.00015 5E-09 37.6 8.4 61 8-74 25-85 (104)
212 1uw4_A UPF3X; nonsense mediate 97.9 0.00014 4.8E-09 36.9 6.9 61 1-61 9-71 (91)
213 3ctr_A Poly(A)-specific ribonu 97.8 3.4E-05 1.2E-09 39.6 4.2 48 1-56 13-60 (101)
214 1wwh_A Nucleoporin 35, nucleop 97.7 0.00038 1.3E-08 36.9 7.5 58 7-71 37-95 (119)
215 3p3d_A Nucleoporin 53; structu 97.5 0.00039 1.3E-08 37.5 5.4 65 6-71 19-97 (132)
216 2kn4_A Immunoglobulin G-bindin 97.4 0.00033 1.1E-08 38.4 5.1 36 22-59 2-37 (158)
217 2dhx_A Poly (ADP-ribose) polym 97.4 0.0029 9.9E-08 32.7 9.6 65 1-74 16-85 (104)
218 2i2y_A Fusion protein consists 97.0 0.00086 2.9E-08 36.6 3.8 42 31-73 9-51 (150)
219 2l08_A Regulator of nonsense t 96.9 0.00092 3.2E-08 34.2 3.0 61 1-61 17-79 (97)
220 3pq1_A Poly(A) RNA polymerase; 95.9 0.0053 1.8E-07 39.7 2.7 47 2-53 61-107 (464)
221 3d45_A Poly(A)-specific ribonu 95.6 0.065 2.2E-06 35.1 6.9 49 2-58 448-496 (507)
222 2g0c_A ATP-dependent RNA helic 83.9 0.82 2.8E-05 21.7 2.2 58 5-71 13-75 (76)
223 2cu1_A Mitogen-activated prote 72.9 7.7 0.00026 19.9 5.8 62 3-73 26-88 (103)
224 1fme_A FSD-EY peptide; beta-BE 47.5 12 0.00043 13.8 1.5 13 5-17 13-25 (28)
225 4e8u_A Putative uncharacterize 45.9 39 0.0013 19.0 4.0 46 5-53 33-81 (172)
226 3h7h_B Transcription elongatio 45.0 17 0.00059 18.6 2.2 26 33-58 49-74 (106)
227 1ytr_A Bacteriocin plantaricin 43.7 14 0.00049 13.4 1.5 12 7-18 14-25 (26)
228 3lpe_A Putative transcription 42.8 28 0.00094 17.2 2.7 25 34-58 49-73 (92)
229 3mfb_A Uncharacterized protein 38.3 52 0.0018 18.2 4.4 37 5-41 3-42 (157)
230 1o57_A PUR operon repressor; p 33.9 80 0.0027 19.1 5.6 42 9-55 46-87 (291)
231 2exu_A Transcription initiatio 33.2 38 0.0013 19.6 2.6 26 33-58 147-172 (200)
232 3ts2_A Protein LIN-28 homolog 31.6 5.1 0.00018 21.8 -1.1 10 34-43 20-29 (148)
233 2nn4_A Hypothetical protein YQ 30.4 24 0.00082 16.9 1.2 17 6-22 4-20 (72)
234 1ik9_C DNA ligase IV; DNA END 30.3 35 0.0012 13.9 2.0 14 4-17 21-34 (37)
235 1jei_A Emerin; membrane protei 26.9 47 0.0016 14.8 1.8 17 4-20 5-21 (53)
236 3p8b_B Transcription antitermi 25.8 67 0.0023 17.2 2.7 26 34-59 42-67 (152)
237 1xn9_A 30S ribosomal protein S 25.2 76 0.0026 16.1 5.3 47 4-51 29-80 (101)
238 2g1d_A 30S ribosomal protein S 24.6 77 0.0026 16.0 2.9 43 4-47 30-77 (98)
239 2v94_A RPS24, 30S ribosomal pr 24.4 82 0.0028 16.2 5.1 46 4-50 38-88 (107)
240 1ywx_A 30S ribosomal protein S 22.0 92 0.0031 15.9 5.5 46 4-50 29-79 (102)
241 2hpu_A NOSL protein; alpha bet 21.2 1.1E+02 0.0038 17.1 3.0 20 37-56 112-131 (175)
242 2lfv_A Protein DAMX; cell divi 26.5 20 0.0007 18.3 0.0 52 6-58 35-87 (106)
No 1
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.91 E-value=1e-23 Score=110.11 Aligned_cols=72 Identities=35% Similarity=0.589 Sum_probs=69.8
Q ss_pred CCccccHHHHHHHHhccCCccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecCC
Q 048030 1 VSFSTTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRP 72 (93)
Q Consensus 1 l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~ 72 (93)
||+++++++|+++|+.||.|.++++++++.+|.++|||||+|.+.++|.+|+..|||..+.|++|.|.++++
T Consensus 27 Lp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~AkP 98 (99)
T 4fxv_A 27 LPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYARP 98 (99)
T ss_dssp CCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCB
T ss_pred CCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEeeC
Confidence 799999999999999999999999999999999999999999999999999999999999999999999875
No 2
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.89 E-value=2.6e-23 Score=107.13 Aligned_cols=77 Identities=18% Similarity=0.367 Sum_probs=70.3
Q ss_pred CCccccHHHHHHHHhccC-CccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhC-CCeeCCeEEEEEecCCCCCCC
Q 048030 1 VSFSTTKEMLADAFSQFG-QVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMN-GKLLDGRVIFVDNVRPSRRYN 77 (93)
Q Consensus 1 l~~~~~~~~l~~~f~~~g-~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~-~~~~~g~~l~v~~~~~~~~~~ 77 (93)
||+++++++|+++|+.|| .|.++++++++.++.++|||||+|.+.++|.+|+..++ +..+.|++|.|+++.+++...
T Consensus 9 Lp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a~~~~~~~ 87 (91)
T 2lxi_A 9 LPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYSDPKPKIN 87 (91)
T ss_dssp CCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECCCSCCCCS
T ss_pred CCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEcCCCCCCC
Confidence 799999999999999999 79999999999999999999999999999999999875 457999999999998776543
No 3
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.89 E-value=8.4e-22 Score=105.12 Aligned_cols=80 Identities=30% Similarity=0.518 Sum_probs=74.5
Q ss_pred CCccccHHHHHHHHhccCCccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecCCCCCCCCCC
Q 048030 1 VSFSTTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTDA 80 (93)
Q Consensus 1 l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~~~~~~~ 80 (93)
||+++++++|+++|+.||.|..+.++.++.++..+|||||+|.+.++|.+|+..|++..+.|+.|.|.+++++.......
T Consensus 23 lp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~~~~~~ 102 (115)
T 2dgo_A 23 LSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKST 102 (115)
T ss_dssp CCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEESSCCCCCSCCC
T ss_pred CCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEccCCCCCCccc
Confidence 78999999999999999999999999998899999999999999999999999999999999999999999887655543
No 4
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.88 E-value=5.1e-22 Score=105.45 Aligned_cols=75 Identities=16% Similarity=0.318 Sum_probs=71.2
Q ss_pred CCccccHHHHHHHHhccCCccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecCCCCC
Q 048030 1 VSFSTTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRR 75 (93)
Q Consensus 1 l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~~ 75 (93)
||+++++++|+++|+.||.|.++.+++++.+++++|||||+|.+.++|.+|+..||+..+.|+.|.|.++.....
T Consensus 14 L~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a~~~~~ 88 (110)
T 3s8s_A 14 LNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLDIKGQQ 88 (110)
T ss_dssp CCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSTTHH
T ss_pred CCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCcH
Confidence 789999999999999999999999999999999999999999999999999999999999999999999876543
No 5
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.88 E-value=1.3e-21 Score=98.87 Aligned_cols=74 Identities=27% Similarity=0.548 Sum_probs=70.9
Q ss_pred CCccccHHHHHHHHhccCCccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecCCCC
Q 048030 1 VSFSTTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSR 74 (93)
Q Consensus 1 l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~ 74 (93)
||+++++++|+++|+.||.|.++.++.++.++..+|||||+|.+.++|.+|+..|++..+.|++|.|.+++++.
T Consensus 9 lp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~~ 82 (83)
T 3md1_A 9 LNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAKLE 82 (83)
T ss_dssp CCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCCCC
T ss_pred CCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCcCC
Confidence 78999999999999999999999999998899999999999999999999999999999999999999998764
No 6
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.88 E-value=1.3e-21 Score=101.89 Aligned_cols=78 Identities=28% Similarity=0.522 Sum_probs=73.3
Q ss_pred CCccccHHHHHHHHhccCCccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecCCCCCCCC
Q 048030 1 VSFSTTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNT 78 (93)
Q Consensus 1 l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~~~~~ 78 (93)
||+++++++|+++|+.||.|..+.++.++.++..+|||||+|.+.++|.+|+..|++..+.|+.|.|.+++++.....
T Consensus 16 lp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~~~~ 93 (99)
T 1whw_A 16 LSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPSTIKKEASQ 93 (99)
T ss_dssp CCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEECCCCSTTCC
T ss_pred CCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCCCccccc
Confidence 789999999999999999999999999988999999999999999999999999999999999999999988766544
No 7
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.88 E-value=1.3e-21 Score=99.69 Aligned_cols=73 Identities=33% Similarity=0.591 Sum_probs=68.9
Q ss_pred CCccccHHHHHHHHhccCCccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecCCC
Q 048030 1 VSFSTTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPS 73 (93)
Q Consensus 1 l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~ 73 (93)
||.++++++|+++|+.||.|.++.++.++.++..+|||||+|.+.++|.+|+..|++..+.|+.|.|.+++++
T Consensus 14 lp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~k 86 (87)
T 3bs9_A 14 LSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRK 86 (87)
T ss_dssp CCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC--
T ss_pred CCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEecCCC
Confidence 6889999999999999999999999999889999999999999999999999999999999999999999865
No 8
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.87 E-value=2.4e-22 Score=104.23 Aligned_cols=72 Identities=24% Similarity=0.427 Sum_probs=67.6
Q ss_pred CCccccHHHHHHHHhccCC--ccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCC----eeCCeEEEEEecCC
Q 048030 1 VSFSTTKEMLADAFSQFGQ--VTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGK----LLDGRVIFVDNVRP 72 (93)
Q Consensus 1 l~~~~~~~~l~~~f~~~g~--i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~----~~~g~~l~v~~~~~ 72 (93)
||+++++++|+++|+.||. +.++++++++.+|+++|||||+|.+.++|.+|+..||+. .+.|++|.|+++++
T Consensus 17 L~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~i~V~~Aks 94 (95)
T 2lkz_A 17 IAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKTIGVDFAKS 94 (95)
T ss_dssp CCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEEEEEEECCC
T ss_pred CCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEEEEEEEccC
Confidence 7999999999999999995 679999999999999999999999999999999999997 48999999999875
No 9
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.87 E-value=2.5e-22 Score=103.16 Aligned_cols=75 Identities=21% Similarity=0.353 Sum_probs=67.0
Q ss_pred CCccccHHHHHHHHhccC--CccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecCCCCC
Q 048030 1 VSFSTTKEMLADAFSQFG--QVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRR 75 (93)
Q Consensus 1 l~~~~~~~~l~~~f~~~g--~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~~ 75 (93)
||+++++++|+++|+.|| .|.++.++.++.+|+++|||||+|.+.++|.+|+..||+..+.|+.|.|.++.+...
T Consensus 9 L~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~~~~~ 85 (90)
T 3p5t_L 9 LTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSNKLEH 85 (90)
T ss_dssp CCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-----
T ss_pred CCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECCCCcc
Confidence 789999999999999999 999999999999999999999999999999999999999999999999998876543
No 10
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.87 E-value=8.4e-21 Score=101.03 Aligned_cols=78 Identities=31% Similarity=0.388 Sum_probs=71.6
Q ss_pred CCccccHHHHHHHHhccCCccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecCCCCCCCCC
Q 048030 1 VSFSTTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTD 79 (93)
Q Consensus 1 l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~~~~~~ 79 (93)
||+++++++|+++|..||.|.++.++.++ ++..++||||+|.+.++|.+|+..|++..+.|+.|.|.+++........
T Consensus 23 lp~~~~~~~l~~~f~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~~~~ 100 (114)
T 2do0_A 23 LDYKVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMDERALPKGDF 100 (114)
T ss_dssp CCTTCCHHHHHHHHTTTSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSCCCCCSCC
T ss_pred CCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEcccCCCCCCC
Confidence 78899999999999999999999999987 6999999999999999999999999999999999999999866555443
No 11
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.87 E-value=3.3e-21 Score=102.82 Aligned_cols=77 Identities=27% Similarity=0.399 Sum_probs=72.4
Q ss_pred CCccccHHHHHHHHhccCCccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecCCCCCCC
Q 048030 1 VSFSTTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYN 77 (93)
Q Consensus 1 l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~~~~ 77 (93)
||+++++++|+++|+.||.|..++++.++.++..+|||||+|.+.++|.+|+..|++..+.|+.|.|.+++++....
T Consensus 33 Lp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~~~ 109 (115)
T 2cpz_A 33 LPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLKRSKNDSK 109 (115)
T ss_dssp CCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEECCCCSCCCC
T ss_pred CCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEcCCCCcCC
Confidence 78999999999999999999999999998899999999999999999999999999999999999999998776543
No 12
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.87 E-value=3.4e-21 Score=99.59 Aligned_cols=78 Identities=36% Similarity=0.619 Sum_probs=73.1
Q ss_pred CCccccHHHHHHHHhccCCccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecCCCCCCCC
Q 048030 1 VSFSTTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNT 78 (93)
Q Consensus 1 l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~~~~~ 78 (93)
||.++++++|+++|+.||.|..+.++.++.++..+|||||+|.+.++|.+|+..|++..+.|+.|.|.+++++.....
T Consensus 13 lp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~~~~ 90 (95)
T 2dnz_A 13 LHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHVTERLDGGS 90 (95)
T ss_dssp CCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEESSCCCCCCC
T ss_pred CCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEcccccCCCC
Confidence 788999999999999999999999999988999999999999999999999999999999999999999987765543
No 13
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.87 E-value=2.7e-21 Score=101.36 Aligned_cols=77 Identities=27% Similarity=0.480 Sum_probs=72.7
Q ss_pred CCccccHHHHHHHHhccCCccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecCCCCCCC
Q 048030 1 VSFSTTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYN 77 (93)
Q Consensus 1 l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~~~~ 77 (93)
||+++++++|+++|+.||.|..+.++.++.++..+|||||+|.+.++|.+|+..|++..+.|+.|.|.+++++....
T Consensus 23 lp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~~~ 99 (103)
T 2cq0_A 23 LSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEWAKPSTNSG 99 (103)
T ss_dssp CCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEESSCCCCSC
T ss_pred CCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEECCCCCCCC
Confidence 78999999999999999999999999998899999999999999999999999999999999999999998776544
No 14
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.87 E-value=2.4e-21 Score=101.33 Aligned_cols=78 Identities=29% Similarity=0.510 Sum_probs=73.0
Q ss_pred CCccccHHHHHHHHhccCCccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecCCCCCCCC
Q 048030 1 VSFSTTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNT 78 (93)
Q Consensus 1 l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~~~~~ 78 (93)
||+++++++|+++|+.||.|..+.++.++.++..+|||||+|.+.++|.+|+..|++..+.|+.|.|.+++++.....
T Consensus 20 Lp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~~~~~ 97 (102)
T 2cqb_A 20 LAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLAKPMRIKES 97 (102)
T ss_dssp CCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEECCCCCCCCC
T ss_pred CCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEeCCCCCCCCC
Confidence 789999999999999999999999999988999999999999999999999999999999999999999987765543
No 15
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=3.1e-21 Score=99.90 Aligned_cols=77 Identities=27% Similarity=0.469 Sum_probs=72.5
Q ss_pred CCccccHHHHHHHHhccCCccEE-EEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecCCCCCCC
Q 048030 1 VSFSTTKEMLADAFSQFGQVTEA-TIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYN 77 (93)
Q Consensus 1 l~~~~~~~~l~~~f~~~g~i~~~-~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~~~~ 77 (93)
||+++++++|+++|+.||.|..+ .++.++.++..+|||||+|.+.++|.+|+..|++..+.|+.|.|.+++++....
T Consensus 13 Lp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~~~ 90 (96)
T 1x5t_A 13 LDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSKG 90 (96)
T ss_dssp CCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEESCCCCCCC
T ss_pred CCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEecccCCCC
Confidence 78999999999999999999999 999998899999999999999999999999999999999999999998776544
No 16
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.86 E-value=5.1e-21 Score=99.84 Aligned_cols=75 Identities=25% Similarity=0.459 Sum_probs=70.8
Q ss_pred CCccccHHHHHHHHhccCCccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecCCCCCC
Q 048030 1 VSFSTTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRY 76 (93)
Q Consensus 1 l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~~~ 76 (93)
||+++++++|+++|+.||.|..+.++.++ ++..+|||||+|.+.++|.+|+..|++..+.|+.|.|.+++++...
T Consensus 25 lp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 99 (100)
T 2do4_A 25 LPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAISNSGPSS 99 (100)
T ss_dssp CCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEECCCCSCC
T ss_pred CCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECCCCCCC
Confidence 78999999999999999999999999998 8999999999999999999999999999999999999999877643
No 17
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.86 E-value=5.8e-21 Score=99.44 Aligned_cols=76 Identities=28% Similarity=0.525 Sum_probs=71.4
Q ss_pred CCccccHHHHHHHHhccCCccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecCCCCCCC
Q 048030 1 VSFSTTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYN 77 (93)
Q Consensus 1 l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~~~~ 77 (93)
||.++++++|+++|+.||.|..+.++.++.++..+|||||+|.+.++|.+|+. |++..+.|+.|.|.+++++....
T Consensus 18 lp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~~a~~~~~~~ 93 (99)
T 2dgs_A 18 IPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVKRAEPRDSKS 93 (99)
T ss_dssp CCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEEECCCCCCCC
T ss_pred CCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEEECCCCcccC
Confidence 78999999999999999999999999998899999999999999999999999 99999999999999998776544
No 18
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.86 E-value=8.5e-21 Score=101.52 Aligned_cols=76 Identities=30% Similarity=0.592 Sum_probs=71.2
Q ss_pred CCccccHHHHHHHHhccCCccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecCCCCCCC
Q 048030 1 VSFSTTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYN 77 (93)
Q Consensus 1 l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~~~~ 77 (93)
||.++++++|+++|+.||.|..+.++.++ ++..+|||||+|.+.++|.+|+..|++..+.|+.|.|.++++.....
T Consensus 15 Lp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~~~ 90 (116)
T 2fy1_A 15 LNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQAKKPSFQS 90 (116)
T ss_dssp CTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEECCCSSCSS
T ss_pred CCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECCCCCCCC
Confidence 78899999999999999999999999998 89999999999999999999999999999999999999998765443
No 19
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.86 E-value=3.3e-21 Score=97.80 Aligned_cols=71 Identities=30% Similarity=0.519 Sum_probs=68.2
Q ss_pred CCccccHHHHHHHHhccCCccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecC
Q 048030 1 VSFSTTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVR 71 (93)
Q Consensus 1 l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 71 (93)
||+++++++|+++|+.||.|..+.++.++.++..+|||||+|.+.++|.+|+..|++..+.|+.|.|++++
T Consensus 15 l~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ak 85 (85)
T 3mdf_A 15 LAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLAK 85 (85)
T ss_dssp CCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 78999999999999999999999999998899999999999999999999999999999999999999875
No 20
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.86 E-value=1.1e-20 Score=103.61 Aligned_cols=78 Identities=23% Similarity=0.448 Sum_probs=73.5
Q ss_pred CCccccHHHHHHHHhccCCccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecCCCCCCCC
Q 048030 1 VSFSTTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNT 78 (93)
Q Consensus 1 l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~~~~~ 78 (93)
||.++++++|+++|+.||.|..+.++.++.+++.+|||||+|.+.++|.+|+..|++..+.|+.|.|.+++++..+..
T Consensus 50 Lp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~~~ 127 (139)
T 1u6f_A 50 IPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVALAASGHQRPG 127 (139)
T ss_dssp CSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEEESSCCCCCCC
T ss_pred CCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCCCCCC
Confidence 788999999999999999999999999998999999999999999999999999999999999999999988766544
No 21
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=4.3e-21 Score=100.99 Aligned_cols=74 Identities=31% Similarity=0.451 Sum_probs=70.7
Q ss_pred CCccccHHHHHHHHhccCCccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecCCCC
Q 048030 1 VSFSTTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSR 74 (93)
Q Consensus 1 l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~ 74 (93)
||.++++++|+++|+.||.|..+.++.++.++..+|||||+|.+.++|.+|+..|++..+.|+.|.|.+++++.
T Consensus 31 lp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~ 104 (106)
T 1p27_B 31 VHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWCFVRG 104 (106)
T ss_dssp CCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEESEESS
T ss_pred CCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEeecCCC
Confidence 68899999999999999999999999999899999999999999999999999999999999999999987654
No 22
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.86 E-value=6.2e-21 Score=98.87 Aligned_cols=76 Identities=26% Similarity=0.449 Sum_probs=71.7
Q ss_pred CCccccHHHHHHHHhccCCccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecCCCCCC
Q 048030 1 VSFSTTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRY 76 (93)
Q Consensus 1 l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~~~ 76 (93)
||.++++++|+++|+.||.|..+.++.++.++..+|||||+|.+.++|.+|+..|++..+.|+.|.|.+++++...
T Consensus 10 Lp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~~ 85 (96)
T 2x1f_A 10 IPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSSNSDIS 85 (96)
T ss_dssp CCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSCSSGG
T ss_pred CCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcCCCCCC
Confidence 6889999999999999999999999999889999999999999999999999999999999999999999876543
No 23
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=4.3e-21 Score=100.39 Aligned_cols=77 Identities=39% Similarity=0.716 Sum_probs=72.3
Q ss_pred CCccccHHHHHHHHhccCCccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecCCCCCCC
Q 048030 1 VSFSTTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYN 77 (93)
Q Consensus 1 l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~~~~ 77 (93)
||+++++++|+++|+.||.|..+.++.++.++..+|||||+|.+.++|.+|+..||+..+.|+.|.|.+++++....
T Consensus 20 Lp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~~~ 96 (102)
T 1x5s_A 20 LSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQAGKSSDNR 96 (102)
T ss_dssp CCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEEEECCCCCC
T ss_pred CCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCCCCC
Confidence 78999999999999999999999999998899999999999999999999999999999999999999998776543
No 24
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.86 E-value=7.4e-21 Score=101.59 Aligned_cols=75 Identities=37% Similarity=0.697 Sum_probs=68.0
Q ss_pred CCccccHHHHHHHHhccCCccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecCCCCCCC
Q 048030 1 VSFSTTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYN 77 (93)
Q Consensus 1 l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~~~~ 77 (93)
||+++++++|+++|+.||.|.+++++.++ +.++|||||+|.+.++|.+|+..|++..+.|+.|.|.+++++..+.
T Consensus 13 Lp~~~te~~L~~~F~~~G~v~~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~~~~~~ 87 (115)
T 4f25_A 13 LDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKERE 87 (115)
T ss_dssp CCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSCCCC--
T ss_pred CCCCCCHHHHHHHHhccCCEEEEEEeecC--CCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCccccc
Confidence 78999999999999999999999999985 4578999999999999999999999999999999999998765433
No 25
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=8.5e-21 Score=98.04 Aligned_cols=72 Identities=33% Similarity=0.594 Sum_probs=69.1
Q ss_pred CCccccHHHHHHHHhccCCccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecCC
Q 048030 1 VSFSTTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRP 72 (93)
Q Consensus 1 l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~ 72 (93)
||+++++++|+++|+.||.|..+.++.++.++..+|||||+|.+.++|.+|+..|++..+.|++|.|+++++
T Consensus 23 lp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 94 (95)
T 2cqc_A 23 LSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVSGPSS 94 (95)
T ss_dssp CCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCSC
T ss_pred CCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEecCC
Confidence 788999999999999999999999999988899999999999999999999999999999999999999864
No 26
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=1.6e-20 Score=100.33 Aligned_cols=76 Identities=32% Similarity=0.548 Sum_probs=70.5
Q ss_pred CCccccHHHHHHHHhccCCccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecCCCCCCC
Q 048030 1 VSFSTTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYN 77 (93)
Q Consensus 1 l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~~~~ 77 (93)
||+++++++|+++|+.||.|..+.++.++.+++.+|||||+|.+.++|.+|+..|++ .+.|+.|.|.++.......
T Consensus 25 lp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V~~a~~~~~~~ 100 (116)
T 2cqd_A 25 LPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANVNLAYLGAKPR 100 (116)
T ss_dssp CCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEEEESTTTCCCC
T ss_pred CCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEEEEcccCCCcc
Confidence 789999999999999999999999999988999999999999999999999999998 8999999999997654433
No 27
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.86 E-value=7.8e-21 Score=98.75 Aligned_cols=77 Identities=34% Similarity=0.514 Sum_probs=70.7
Q ss_pred CCccccHHHHHHHHhccCCccEEEEeecCC---CCCcccEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecCCCCCCC
Q 048030 1 VSFSTTKEMLADAFSQFGQVTEATIIMDKG---KNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYN 77 (93)
Q Consensus 1 l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~---~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~~~~ 77 (93)
||+++++++|+++|+.||.|..+.++.++. ++..+|||||+|.+.++|.+|+..|++..+.|+.|.|.+++++....
T Consensus 13 Lp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~~~ 92 (98)
T 2cpf_A 13 LNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEVRISERATKPA 92 (98)
T ss_dssp CCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEEECSSCSSCCC
T ss_pred CCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEccCCCCCC
Confidence 789999999999999999999999998765 56899999999999999999999999999999999999998766544
No 28
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=7.5e-21 Score=99.91 Aligned_cols=77 Identities=26% Similarity=0.386 Sum_probs=72.4
Q ss_pred CCccccHHHHHHHHhccCCccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecCCCCCCC
Q 048030 1 VSFSTTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYN 77 (93)
Q Consensus 1 l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~~~~ 77 (93)
||+++++++|+++|+.||.|..+.++.++.++..+|||||+|.+.++|.+|+..|++..+.|+.|.|.++++.....
T Consensus 23 lp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~~ 99 (105)
T 1x5u_A 23 LDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVNKASAHNKNL 99 (105)
T ss_dssp CCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEEETTTTSCCC
T ss_pred CCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECCCCCcCC
Confidence 78999999999999999999999999998899999999999999999999999999999999999999998776543
No 29
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.85 E-value=7.3e-21 Score=100.73 Aligned_cols=75 Identities=23% Similarity=0.399 Sum_probs=71.1
Q ss_pred CCccccHHHHHHHHhccCCccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecCCCCC
Q 048030 1 VSFSTTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRR 75 (93)
Q Consensus 1 l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~~ 75 (93)
||+++++++|+.+|+.||.|..+.++.++.++..+|||||+|.+.++|..|+..|++..+.|+.|.|.+++++..
T Consensus 34 lp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~ 108 (110)
T 1oo0_B 34 IHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCFVKGP 108 (110)
T ss_dssp CCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESEESSC
T ss_pred CCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEcccCCC
Confidence 688999999999999999999999999988999999999999999999999999999999999999999987654
No 30
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.85 E-value=9.8e-21 Score=100.31 Aligned_cols=77 Identities=32% Similarity=0.521 Sum_probs=72.1
Q ss_pred CCccccHHHHHHHHhccCCccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhC------CCeeCCeEEEEEecCCCC
Q 048030 1 VSFSTTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMN------GKLLDGRVIFVDNVRPSR 74 (93)
Q Consensus 1 l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~------~~~~~g~~l~v~~~~~~~ 74 (93)
||+++++++|+.+|+.||.|..+.++.++.++..+|||||+|.+.++|.+|+..|+ +..+.|+.|.|.++.++.
T Consensus 23 Lp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~~l~v~~a~~~~ 102 (111)
T 1x4h_A 23 LSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGRQLKVDLAVTRD 102 (111)
T ss_dssp CCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSCEEEEECCCCCC
T ss_pred CCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcCEEEEEEECCCCc
Confidence 78999999999999999999999999998899999999999999999999999999 999999999999998765
Q ss_pred CCC
Q 048030 75 RYN 77 (93)
Q Consensus 75 ~~~ 77 (93)
...
T Consensus 103 ~~~ 105 (111)
T 1x4h_A 103 EAA 105 (111)
T ss_dssp CCC
T ss_pred cCC
Confidence 443
No 31
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.85 E-value=4.4e-21 Score=100.54 Aligned_cols=77 Identities=30% Similarity=0.514 Sum_probs=72.1
Q ss_pred CCccccHHHHHHHHhccCCccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecCCCCCCC
Q 048030 1 VSFSTTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYN 77 (93)
Q Consensus 1 l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~~~~ 77 (93)
||+++++++|+++|+.||.|..+.++.++.++..+|||||+|.+.++|.+|+..|++..+.|+.|.|.+++......
T Consensus 21 Lp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~~~~ 97 (103)
T 2dnm_A 21 LTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQVARYGRRDL 97 (103)
T ss_dssp CCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEECSSCCSCC
T ss_pred CCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEECCcCCCCC
Confidence 78999999999999999999999999998889999999999999999999999999999999999999998765443
No 32
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.85 E-value=6e-21 Score=103.81 Aligned_cols=75 Identities=35% Similarity=0.584 Sum_probs=71.2
Q ss_pred CCccccHHHHHHHHhccCCccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecCCCCC
Q 048030 1 VSFSTTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRR 75 (93)
Q Consensus 1 l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~~ 75 (93)
||+++++++|+++|+.||.|..+.++.++.++..+|||||+|.+.++|.+|+..|++..+.|+.|.|.++++++.
T Consensus 54 Lp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~~a~~~~p 128 (129)
T 2kxn_B 54 LSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDFSITKRP 128 (129)
T ss_dssp CTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEESCCSSSSC
T ss_pred CCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEecCCCC
Confidence 789999999999999999999999999988999999999999999999999999999999999999999987653
No 33
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.85 E-value=8.5e-21 Score=99.86 Aligned_cols=77 Identities=23% Similarity=0.338 Sum_probs=71.9
Q ss_pred CCccccHHHHHHHHhccCCccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCee---CCeEEEEEecCCCCCCC
Q 048030 1 VSFSTTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLL---DGRVIFVDNVRPSRRYN 77 (93)
Q Consensus 1 l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~---~g~~l~v~~~~~~~~~~ 77 (93)
||.++++++|+++|+.||.|..+.++.++.++..+|||||+|.+.++|.+|+..|++..+ .|++|.|.+++++....
T Consensus 21 lp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~a~~~~~~~ 100 (106)
T 2dgp_A 21 IPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQVKPADSESRGG 100 (106)
T ss_dssp CCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCEEEECCCCSCCC
T ss_pred CCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceEEEEECCcccccC
Confidence 789999999999999999999999999988999999999999999999999999999987 88999999998776544
No 34
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.85 E-value=1.3e-20 Score=96.27 Aligned_cols=72 Identities=33% Similarity=0.535 Sum_probs=68.8
Q ss_pred CCccccHHHHHHHHhccCCccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecCCC
Q 048030 1 VSFSTTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPS 73 (93)
Q Consensus 1 l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~ 73 (93)
||+++++++|+++|+.||.|..+.++.++.++..+|||||+|.+.++|.+|+ .|++..+.|+.|.|.++++.
T Consensus 14 lp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~~~ 85 (89)
T 3ucg_A 14 VDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKRTN 85 (89)
T ss_dssp CCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETTTT
T ss_pred CCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEccCC
Confidence 7899999999999999999999999999889999999999999999999999 89999999999999998764
No 35
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.85 E-value=8.3e-21 Score=100.43 Aligned_cols=74 Identities=41% Similarity=0.692 Sum_probs=70.6
Q ss_pred CCccccHHHHHHHHhccCCccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecCCCC
Q 048030 1 VSFSTTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSR 74 (93)
Q Consensus 1 l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~ 74 (93)
||..+++++|+++|+.||.|..+.++.++.++..+|||||+|.+.++|.+|+..|++..+.|+.|.|.+++++.
T Consensus 34 Lp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~k~ 107 (108)
T 2jrs_A 34 LHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHVTERT 107 (108)
T ss_dssp CCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEECSCSSC
T ss_pred CCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEcccCC
Confidence 68899999999999999999999999998899999999999999999999999999999999999999988764
No 36
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=1.2e-20 Score=100.37 Aligned_cols=78 Identities=29% Similarity=0.356 Sum_probs=72.4
Q ss_pred CCccccHHHHHHHHhccCCcc--------EEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecCC
Q 048030 1 VSFSTTKEMLADAFSQFGQVT--------EATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRP 72 (93)
Q Consensus 1 l~~~~~~~~l~~~f~~~g~i~--------~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~ 72 (93)
||+++++++|+++|+.||.|. .+.++.++.++..+|||||+|.+.++|.+|+..|++..+.|+.|.|.++++
T Consensus 23 Lp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 102 (113)
T 2cpe_A 23 LNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQGSKLKVSLARK 102 (113)
T ss_dssp CCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEETTEECEEECSSC
T ss_pred CCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccCCCEEEEEECCC
Confidence 788999999999999999998 699999988999999999999999999999999999999999999999988
Q ss_pred CCCCCC
Q 048030 73 SRRYNT 78 (93)
Q Consensus 73 ~~~~~~ 78 (93)
+.....
T Consensus 103 ~~~~~~ 108 (113)
T 2cpe_A 103 KPPMNS 108 (113)
T ss_dssp CCCSTT
T ss_pred CCCCCC
Confidence 765443
No 37
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.85 E-value=1.1e-20 Score=98.41 Aligned_cols=71 Identities=27% Similarity=0.360 Sum_probs=68.0
Q ss_pred CCccccHHHHHHHHhccCCccE--------EEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecC
Q 048030 1 VSFSTTKEMLADAFSQFGQVTE--------ATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVR 71 (93)
Q Consensus 1 l~~~~~~~~l~~~f~~~g~i~~--------~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 71 (93)
||.++++++|+++|+.||.|.. +.++.++.++..+|||||+|.+.++|.+|+..|++..+.|+.|.|++++
T Consensus 21 Lp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~A~ 99 (99)
T 2la6_A 21 LGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSGNPIKVSFAT 99 (99)
T ss_dssp CCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSSSSBCEEEECC
T ss_pred CCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEecC
Confidence 7889999999999999999999 9999998899999999999999999999999999999999999999874
No 38
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.85 E-value=1e-20 Score=97.65 Aligned_cols=71 Identities=35% Similarity=0.515 Sum_probs=68.2
Q ss_pred CCccccHHHHHHHHhccCCccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecC
Q 048030 1 VSFSTTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVR 71 (93)
Q Consensus 1 l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 71 (93)
||+++++++|+++|+.||.|..+.++.++.++..+|||||+|.+.++|.+|+..|++..+.|++|.|.+++
T Consensus 24 lp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ak 94 (94)
T 2e5h_A 24 LPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASIAI 94 (94)
T ss_dssp CCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEECC
T ss_pred CCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEecC
Confidence 78999999999999999999999999998889999999999999999999999999999999999999875
No 39
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=1.7e-21 Score=102.18 Aligned_cols=77 Identities=30% Similarity=0.630 Sum_probs=72.4
Q ss_pred CCccccHHHHHHHHhccCCccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecCCCCCCC
Q 048030 1 VSFSTTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYN 77 (93)
Q Consensus 1 l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~~~~ 77 (93)
||+++++++|+++|+.||.|..+.++.++.++.++|||||+|.+.++|.+|+..|++..+.|+.|.|.++.+.....
T Consensus 16 lp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~~ 92 (104)
T 1p1t_A 16 IPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAASEKNKE 92 (104)
T ss_dssp CCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEETTCTTHHH
T ss_pred CCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeCCCccchh
Confidence 68899999999999999999999999998899999999999999999999999999999999999999998776543
No 40
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.85 E-value=1.2e-20 Score=98.18 Aligned_cols=75 Identities=24% Similarity=0.387 Sum_probs=70.7
Q ss_pred CCccccHHHHHHHHhccCCcc-EEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeCCeE----EEEEecCCCCC
Q 048030 1 VSFSTTKEMLADAFSQFGQVT-EATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRV----IFVDNVRPSRR 75 (93)
Q Consensus 1 l~~~~~~~~l~~~f~~~g~i~-~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~----l~v~~~~~~~~ 75 (93)
||+++++++|+++|+.||.|. .++++.++.++..+|||||+|.+.++|.+|+..||+..+.|+. |+|.++++...
T Consensus 17 Lp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~l~v~~a~~~~~ 96 (99)
T 2div_A 17 LEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFKLNYATYSGP 96 (99)
T ss_dssp CCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEECCEEETTCCSS
T ss_pred CCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcceeEEEeecCCCCC
Confidence 789999999999999999999 9999999989999999999999999999999999999999998 99999876643
No 41
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.85 E-value=1.5e-20 Score=98.99 Aligned_cols=77 Identities=22% Similarity=0.502 Sum_probs=72.0
Q ss_pred CCccccHHHHHHHHhccCCccEEEEeec-CCCCCcccEEEEEecCHHHHHHHHHHh-CCCeeCCeEEEEEecCCCCCCC
Q 048030 1 VSFSTTKEMLADAFSQFGQVTEATIIMD-KGKNRSKGYGYVTFSTEEEAQKALADM-NGKLLDGRVIFVDNVRPSRRYN 77 (93)
Q Consensus 1 l~~~~~~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~g~~fv~f~~~~~a~~a~~~l-~~~~~~g~~l~v~~~~~~~~~~ 77 (93)
||+++++++|+++|+.||.|..+.++.+ +.++..+|||||+|.+.++|.+|+..| ++..+.|+.|.|.+++++....
T Consensus 23 lp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~v~~a~~~~~~~ 101 (107)
T 2cph_A 23 IPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVLEWADSEVTVQ 101 (107)
T ss_dssp CCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCEEEECCCCCCCC
T ss_pred CCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEEEEeCCCCCCCC
Confidence 7899999999999999999999999988 778999999999999999999999999 9999999999999998776544
No 42
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.85 E-value=2.5e-20 Score=97.68 Aligned_cols=75 Identities=24% Similarity=0.471 Sum_probs=70.0
Q ss_pred CCccccHHHHHHHHhccCCccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecCCCCCCC
Q 048030 1 VSFSTTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYN 77 (93)
Q Consensus 1 l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~~~~ 77 (93)
||+++++++|+++|+.|| |..+.++.++.++..+|||||+|.+.++|.+|+ .|++..+.|+.|.|.+++++....
T Consensus 23 Lp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~~~~~~ 97 (103)
T 2dng_A 23 LPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVDIAEGRKQDK 97 (103)
T ss_dssp CCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEEECCCCCCCC
T ss_pred CCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEEEecCCCCCC
Confidence 789999999999999997 999999999989999999999999999999999 899999999999999998765543
No 43
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.85 E-value=2.6e-20 Score=97.84 Aligned_cols=77 Identities=23% Similarity=0.378 Sum_probs=71.3
Q ss_pred CCccccHHHHHHHHhccCCccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeCC---eEEEEEecCCCCCCC
Q 048030 1 VSFSTTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDG---RVIFVDNVRPSRRYN 77 (93)
Q Consensus 1 l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g---~~l~v~~~~~~~~~~ 77 (93)
||+++++++|+++|+.||.|..+.++.++ ++..+|||||+|.+.++|.+|+..|++..+.| +.|.|.+++++..+.
T Consensus 23 Lp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V~~a~~~~~~~ 101 (105)
T 2dnh_A 23 LNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVKFADTDKESG 101 (105)
T ss_dssp CCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEEEESCSSCCCS
T ss_pred CCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEEEECccCcccC
Confidence 78999999999999999999999999987 79999999999999999999999999999988 999999998876554
Q ss_pred C
Q 048030 78 T 78 (93)
Q Consensus 78 ~ 78 (93)
.
T Consensus 102 ~ 102 (105)
T 2dnh_A 102 P 102 (105)
T ss_dssp C
T ss_pred C
Confidence 3
No 44
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.84 E-value=1.2e-20 Score=96.19 Aligned_cols=74 Identities=31% Similarity=0.556 Sum_probs=68.8
Q ss_pred CCccccHHHHHHHHhccCCccEEEEeecCCCCC-cccEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecCCCC
Q 048030 1 VSFSTTKEMLADAFSQFGQVTEATIIMDKGKNR-SKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSR 74 (93)
Q Consensus 1 l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~-~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~ 74 (93)
||+++++++|+++|+.||.|..+.++.++.++. .+|||||+|.+.++|.+|+..||+..+.|+.|.|.++.+..
T Consensus 12 lp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 86 (88)
T 4a8x_A 12 LTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAVLAPW 86 (88)
T ss_dssp CCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEECCCC
T ss_pred CCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEECCCCC
Confidence 789999999999999999999999998876665 89999999999999999999999999999999999987654
No 45
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.84 E-value=2.9e-21 Score=100.90 Aligned_cols=73 Identities=23% Similarity=0.436 Sum_probs=69.3
Q ss_pred CCc------cccHHHHHHHHhccCCccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeCC-eEEEEEecCCC
Q 048030 1 VSF------STTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDG-RVIFVDNVRPS 73 (93)
Q Consensus 1 l~~------~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g-~~l~v~~~~~~ 73 (93)
||+ ++++++|+++|+.||.|.++.+++++.+|+++|||||+|.+.++|.+|+..||+..+.| +.|.|.++.+.
T Consensus 14 Lp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~l~V~~a~~~ 93 (100)
T 3ns6_A 14 APVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHRLFLYTMKDV 93 (100)
T ss_dssp CCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEESHHH
T ss_pred CCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeEEEEEECchh
Confidence 677 89999999999999999999999999899999999999999999999999999999999 99999998754
No 46
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.84 E-value=2.3e-20 Score=97.80 Aligned_cols=76 Identities=36% Similarity=0.647 Sum_probs=70.6
Q ss_pred CCccccHHHHHHHHhccCCccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecCCCCCCCC
Q 048030 1 VSFSTTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNT 78 (93)
Q Consensus 1 l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~~~~~ 78 (93)
||+++++++|+++|+.||.|..+.++.+ ++..++||||+|.+.++|.+|+..|++..+.|+.|.|.+++++.....
T Consensus 23 lp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~~~~~ 98 (103)
T 2d9p_A 23 LDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQS 98 (103)
T ss_dssp CCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECSSCCCCCC
T ss_pred CCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEecccccCCC
Confidence 7899999999999999999999999987 789999999999999999999999999999999999999987765443
No 47
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.84 E-value=1.5e-20 Score=105.07 Aligned_cols=77 Identities=29% Similarity=0.569 Sum_probs=72.3
Q ss_pred CCccccHHHHHHHHhccCCccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecCCCCCCC
Q 048030 1 VSFSTTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYN 77 (93)
Q Consensus 1 l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~~~~ 77 (93)
||+++++++|+++|+.||.|..+.++.++.+|.++|||||+|.+.++|..|+..||+..+.|+.|.|.++++.....
T Consensus 78 l~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~~ 154 (158)
T 2kn4_A 78 LTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPPD 154 (158)
T ss_dssp CCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEECCSSCCC
T ss_pred CCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCCCCC
Confidence 78999999999999999999999999998899999999999999999999999999999999999999998765443
No 48
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=2.2e-20 Score=98.02 Aligned_cols=76 Identities=21% Similarity=0.420 Sum_probs=70.6
Q ss_pred CCccccHHHHHHHHhccCCccEEEEeecCCC-CCcccEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecCCCCCCCC
Q 048030 1 VSFSTTKEMLADAFSQFGQVTEATIIMDKGK-NRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNT 78 (93)
Q Consensus 1 l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~-~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~~~~~ 78 (93)
||+++++++|+++|+.|| |..+.++.++.+ +..+|||||+|.+.++|.+|+ .|++..+.|+.|.|.+++++....+
T Consensus 23 lp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~~~~~~~ 99 (104)
T 1wi8_A 23 LPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRVDVADQAQDKDS 99 (104)
T ss_dssp CCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEEEECCCCCCCCC
T ss_pred CCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEEEEccCCCCCCC
Confidence 789999999999999999 999999999877 899999999999999999999 8999999999999999988765543
No 49
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.84 E-value=2.2e-20 Score=104.45 Aligned_cols=73 Identities=27% Similarity=0.418 Sum_probs=69.9
Q ss_pred CCccccHHHHHHHHhccC--CccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecCCC
Q 048030 1 VSFSTTKEMLADAFSQFG--QVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPS 73 (93)
Q Consensus 1 l~~~~~~~~l~~~f~~~g--~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~ 73 (93)
||+++++++|+++|+.|| .|.+++++.++.+|..+|||||+|.+.++|.+|+..|++..+.|+.|.|.++.++
T Consensus 63 Lp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~a~~~ 137 (156)
T 3n9u_C 63 FSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRPATRQ 137 (156)
T ss_dssp CCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEECCHH
T ss_pred CCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEEcCCC
Confidence 789999999999999999 9999999999999999999999999999999999999999999999999998654
No 50
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.84 E-value=5.1e-21 Score=104.25 Aligned_cols=77 Identities=22% Similarity=0.391 Sum_probs=71.2
Q ss_pred CCccccHHHHHHHHhccCCccE--EEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCC----eeCCeEEEEEecCCCC
Q 048030 1 VSFSTTKEMLADAFSQFGQVTE--ATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGK----LLDGRVIFVDNVRPSR 74 (93)
Q Consensus 1 l~~~~~~~~l~~~f~~~g~i~~--~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~----~~~g~~l~v~~~~~~~ 74 (93)
||+++++++|+++|+.||.|.. +++++++.+|+.+|||||+|.+. +|.+|+..|++. .+.|+.|.|.++++..
T Consensus 31 L~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr~l~V~~a~~~~ 109 (131)
T 2m2b_A 31 LNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGKTINVEFAKGSK 109 (131)
T ss_dssp CCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGCCCCCEECCCSC
T ss_pred CCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCEEEEEEECCCCC
Confidence 7899999999999999999966 99999999999999999999999 999999999999 9999999999998775
Q ss_pred CCCC
Q 048030 75 RYNT 78 (93)
Q Consensus 75 ~~~~ 78 (93)
....
T Consensus 110 ~~~~ 113 (131)
T 2m2b_A 110 RDMA 113 (131)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 5443
No 51
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.84 E-value=2e-20 Score=98.11 Aligned_cols=77 Identities=23% Similarity=0.461 Sum_probs=71.8
Q ss_pred CCccccHHHHHHHHhc-cCCccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCe-eCCeEEEEEecCCCCCCCC
Q 048030 1 VSFSTTKEMLADAFSQ-FGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKL-LDGRVIFVDNVRPSRRYNT 78 (93)
Q Consensus 1 l~~~~~~~~l~~~f~~-~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~-~~g~~l~v~~~~~~~~~~~ 78 (93)
||+++++++|+++|+. ||.|..+.++.++ ++..+|||||+|.+.++|.+|+..|++.. +.|+.|.|.++.++.....
T Consensus 17 Lp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~~a~~~~~~~~ 95 (104)
T 2dhg_A 17 LTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSVAIPKASRVK 95 (104)
T ss_dssp CCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCCBCCCCCSCCC
T ss_pred CCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEEEccCCCcCCC
Confidence 7899999999999999 9999999999998 99999999999999999999999999999 9999999999987765443
No 52
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.84 E-value=5.1e-20 Score=102.80 Aligned_cols=76 Identities=29% Similarity=0.434 Sum_probs=71.9
Q ss_pred CCccccHHHHHHHHhccCCccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecCCCCCC
Q 048030 1 VSFSTTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRY 76 (93)
Q Consensus 1 l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~~~ 76 (93)
||+++++++|+++|+.||.|..|.++.++.++..++||||+|.+.++|.+|+..|++..+.|+.|.|.++++....
T Consensus 47 lp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~~ 122 (156)
T 1h2v_Z 47 LSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWDAGFKEG 122 (156)
T ss_dssp CCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEEESCCCTT
T ss_pred CCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCCCc
Confidence 7899999999999999999999999999989999999999999999999999999999999999999999876543
No 53
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.84 E-value=4.3e-20 Score=97.29 Aligned_cols=70 Identities=30% Similarity=0.524 Sum_probs=67.5
Q ss_pred CCccccHHHHHHHHhccCCccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecC
Q 048030 1 VSFSTTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVR 71 (93)
Q Consensus 1 l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 71 (93)
||+.+++++|+++|+.||.|..+.++.++ ++..+|||||+|.+.++|.+|+..|++..+.|+.|.|+++.
T Consensus 37 lp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 106 (107)
T 3ulh_A 37 LDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLVT 106 (107)
T ss_dssp CCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEeC
Confidence 78999999999999999999999999998 99999999999999999999999999999999999999875
No 54
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.84 E-value=1.5e-20 Score=101.65 Aligned_cols=77 Identities=30% Similarity=0.420 Sum_probs=72.1
Q ss_pred CCccccHHHHHHHHhccCCccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecCCCCCCC
Q 048030 1 VSFSTTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYN 77 (93)
Q Consensus 1 l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~~~~ 77 (93)
||+++++++|+.+|+.||.|..+.++.++.++..+|||||+|.+.++|.+|+..|++..+.|+.|.|.++.++....
T Consensus 30 lp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~~ 106 (126)
T 3ex7_B 30 VHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWCFVRGPPK 106 (126)
T ss_dssp CCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEESEESSSCC
T ss_pred CCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEecCCCCCC
Confidence 78999999999999999999999999998899999999999999999999999999999999999999998665543
No 55
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.84 E-value=1.9e-20 Score=97.33 Aligned_cols=73 Identities=18% Similarity=0.288 Sum_probs=68.9
Q ss_pred CCccccHHHHHHHHhccCCccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecCCC
Q 048030 1 VSFSTTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPS 73 (93)
Q Consensus 1 l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~ 73 (93)
||+++++++|+++|+.||.|..+.++.++.++..+|||||+|.+.++|.+|+..|++..+.|+.|.|+++...
T Consensus 23 Lp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~ 95 (98)
T 2cqp_A 23 MPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVLGSGP 95 (98)
T ss_dssp CCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEESSCS
T ss_pred CCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEcCCC
Confidence 7899999999999999999998888888889999999999999999999999999999999999999998754
No 56
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.84 E-value=5.3e-20 Score=99.23 Aligned_cols=74 Identities=30% Similarity=0.496 Sum_probs=69.7
Q ss_pred CCccccHHHHHHHHhccCCccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecCCCCC
Q 048030 1 VSFSTTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRR 75 (93)
Q Consensus 1 l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~~ 75 (93)
||.++++++|+++|+.||.|.++.++.++.++..+|||||+|.+.++|.+|+ .|++..+.|+.|.|.++++...
T Consensus 44 lp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~~~~ 117 (124)
T 2jwn_A 44 VDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKRTNMP 117 (124)
T ss_dssp ECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESSCCCS
T ss_pred CCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECCCCCC
Confidence 6889999999999999999999999999889999999999999999999999 7999999999999999886544
No 57
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.84 E-value=3.7e-20 Score=95.66 Aligned_cols=71 Identities=32% Similarity=0.469 Sum_probs=67.3
Q ss_pred CCccccHHHHHHHHhccCCccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecCC
Q 048030 1 VSFSTTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRP 72 (93)
Q Consensus 1 l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~ 72 (93)
||+++++++|+++|+.||.|..+.++.++. +..+|||||+|.+.++|.+|+..|++..+.|+.|.|.++++
T Consensus 24 lp~~~~~~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 94 (95)
T 2ywk_A 24 LEARVREEILYELFLQAGPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSGPSS 94 (95)
T ss_dssp CCTTCCHHHHHHHHGGGSCEEEEEEEECTT-SCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEECCCC
T ss_pred CCCCCCHHHHHHHHHhcCCEEEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEEcCC
Confidence 789999999999999999999999999874 89999999999999999999999999999999999998764
No 58
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=5e-20 Score=95.51 Aligned_cols=72 Identities=14% Similarity=0.241 Sum_probs=66.7
Q ss_pred CCccccHHHHH----HHHhccCCccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecCCCCC
Q 048030 1 VSFSTTKEMLA----DAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRR 75 (93)
Q Consensus 1 l~~~~~~~~l~----~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~~ 75 (93)
||+++++++|+ ++|+.||.|.++.++.++.+ ++||||+|.+.++|.+|+..||+..+.|++|.|.++++...
T Consensus 17 L~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V~~a~~~~~ 92 (96)
T 2dgx_A 17 IDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKIGSKKILVSLATGASG 92 (96)
T ss_dssp CCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCCSSC
T ss_pred CCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcCCCCC
Confidence 78999999999 99999999999999988754 78999999999999999999999999999999999976654
No 59
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.83 E-value=1.1e-19 Score=98.04 Aligned_cols=75 Identities=27% Similarity=0.448 Sum_probs=70.3
Q ss_pred CCccccHHHHHHHHhccCCccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecCCCCCC
Q 048030 1 VSFSTTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRY 76 (93)
Q Consensus 1 l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~~~ 76 (93)
||.++++++|+++|+.||.|..+.++.++ ++..+|||||+|.+.++|.+|+..|++..+.|+.|.|+++......
T Consensus 43 lp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~~ 117 (124)
T 2kt5_A 43 LDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVASQIDL 117 (124)
T ss_dssp CCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEECCTTCC
T ss_pred CCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEeCCCCCC
Confidence 68899999999999999999999999998 8999999999999999999999999999999999999998765443
No 60
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.83 E-value=2.1e-20 Score=96.57 Aligned_cols=72 Identities=18% Similarity=0.338 Sum_probs=67.7
Q ss_pred CCccccHHHHHHHHhccCCccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecCC
Q 048030 1 VSFSTTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRP 72 (93)
Q Consensus 1 l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~ 72 (93)
||+++++++|+++|+.||.|..+.++.++.++..+|||||+|.+.++|.+|+..||+..+.|++|.|.++.+
T Consensus 23 lp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a~s 94 (95)
T 2ek1_A 23 MPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGPSS 94 (95)
T ss_dssp CCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCC-
T ss_pred CCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEeccC
Confidence 789999999999999999999998888888999999999999999999999999999999999999998754
No 61
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=1.3e-19 Score=94.95 Aligned_cols=75 Identities=25% Similarity=0.403 Sum_probs=68.5
Q ss_pred CCccccHHHHHHHHhccCCccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecCCCCCCC
Q 048030 1 VSFSTTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYN 77 (93)
Q Consensus 1 l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~~~~ 77 (93)
||+++++++|+++|+.||.|..+.++.++. ..+|||||+|.+.++|.+|+..|++..+.|+.|.|.+++++....
T Consensus 23 lp~~~t~~~l~~~F~~~G~i~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~~~ 97 (103)
T 2cqi_A 23 LSRDVTEVLILQLFSQIGPCKSCKMITEHT--SNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQK 97 (103)
T ss_dssp CCTTCCHHHHHHHHHHHSCEEEEEEECCCC--SSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCCTTCCC
T ss_pred CCccCCHHHHHHHHHhcCCEeEEEEEecCC--CCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEECCCCcccc
Confidence 789999999999999999999999998853 368999999999999999999999999999999999998766544
No 62
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.83 E-value=1.3e-20 Score=100.88 Aligned_cols=71 Identities=31% Similarity=0.462 Sum_probs=67.6
Q ss_pred CCccccHHHHHHHHhccCCccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecC
Q 048030 1 VSFSTTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVR 71 (93)
Q Consensus 1 l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 71 (93)
||+++++++|+++|+.||.|.++.++.++.+++.+|||||+|.+.++|.+|+..||+..+.|+.|+|++++
T Consensus 48 lp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ak 118 (118)
T 2khc_A 48 LPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQLKK 118 (118)
T ss_dssp SCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEEEC-
T ss_pred CCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEecC
Confidence 68899999999999999999999999998899999999999999999999999999999999999999874
No 63
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=7.4e-20 Score=97.70 Aligned_cols=76 Identities=33% Similarity=0.587 Sum_probs=71.2
Q ss_pred CCccccHHHHHHHHhccCCccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecCCCCCCC
Q 048030 1 VSFSTTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYN 77 (93)
Q Consensus 1 l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~~~~ 77 (93)
||+++++++|+.+|+.||.|..+.++.++.++..+|||||+|.+.++|.+|+.. ++..+.|+.|.|.++.++....
T Consensus 35 Lp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a~~~~~~~ 110 (116)
T 1x4b_A 35 LSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRAVAREESG 110 (116)
T ss_dssp CTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECCSSCCCCC
T ss_pred CCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEECCCCccCC
Confidence 789999999999999999999999999988999999999999999999999997 9999999999999998776544
No 64
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.83 E-value=3.6e-20 Score=97.36 Aligned_cols=76 Identities=36% Similarity=0.553 Sum_probs=70.9
Q ss_pred CCccccHHHHHHHHhccCCccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecCCCCCCC
Q 048030 1 VSFSTTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYN 77 (93)
Q Consensus 1 l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~~~~ 77 (93)
||+++++++|+++|+.||.|..+.++.++.++..+|||||+|.+.++|.+|+.. ++..+.|+.|.|.++.++....
T Consensus 24 lp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V~~a~~~~~~~ 99 (105)
T 2dh8_A 24 LDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDPKPCTPRGMQP 99 (105)
T ss_dssp CCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBCCCSCCSSCCT
T ss_pred CCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEEccCCCCCC
Confidence 789999999999999999999999999988999999999999999999999998 9999999999999988765443
No 65
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=1.9e-19 Score=94.29 Aligned_cols=76 Identities=32% Similarity=0.601 Sum_probs=69.1
Q ss_pred CCccccHHHHHHHHhccCCccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecCCCCCCCC
Q 048030 1 VSFSTTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNT 78 (93)
Q Consensus 1 l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~~~~~ 78 (93)
||+++++++|+++|+.||.|..+.++.++. ..++||||+|.+.++|.+|+..|++..+.|+.|.|.+++++.....
T Consensus 23 lp~~~t~~~l~~~f~~~G~v~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~~~ 98 (103)
T 2cq3_A 23 IPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATARVMTNS 98 (103)
T ss_dssp CCTTCCHHHHHHHGGGTSCEEEEEEECCTT--TTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCSSCCCCC
T ss_pred CCCCCCHHHHHHHHHhcCCeEEEEEEecCC--CCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEcccCCCCCC
Confidence 789999999999999999999999998863 3889999999999999999999999999999999999987765443
No 66
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.83 E-value=1.2e-20 Score=93.72 Aligned_cols=69 Identities=30% Similarity=0.571 Sum_probs=65.8
Q ss_pred CCccccHHHHHHHHhccCCccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEec
Q 048030 1 VSFSTTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNV 70 (93)
Q Consensus 1 l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 70 (93)
||+++++++|+++|+.||.|..+.++.++.++.++|||||+|.+.++|++|+. |++..+.|++|.|+++
T Consensus 7 lp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 7 LSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 78999999999999999999999999998899999999999999999999998 9999999999999874
No 67
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=7.2e-20 Score=96.71 Aligned_cols=78 Identities=17% Similarity=0.285 Sum_probs=71.0
Q ss_pred CCccccHHHHHHHHhccCC-ccEEEEe-ecCCCCCcccEEEEEecCHHHHHHHHHHhC--CCeeCCeEEEEEecCCCCCC
Q 048030 1 VSFSTTKEMLADAFSQFGQ-VTEATII-MDKGKNRSKGYGYVTFSTEEEAQKALADMN--GKLLDGRVIFVDNVRPSRRY 76 (93)
Q Consensus 1 l~~~~~~~~l~~~f~~~g~-i~~~~~~-~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~--~~~~~g~~l~v~~~~~~~~~ 76 (93)
||+++++++|+++|..||. |.++.++ .++.++..+|||||+|.+.++|..|+..|+ +..+.|+.|.|.+++++...
T Consensus 16 Lp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~V~~a~~~~~~ 95 (109)
T 2dis_A 16 IPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDV 95 (109)
T ss_dssp CCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCEEEESCSSCST
T ss_pred CCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEEEEEcCCCCCc
Confidence 7899999999999999998 9999988 788888999999999999999999999996 58899999999999887654
Q ss_pred CC
Q 048030 77 NT 78 (93)
Q Consensus 77 ~~ 78 (93)
..
T Consensus 96 ~~ 97 (109)
T 2dis_A 96 DE 97 (109)
T ss_dssp TT
T ss_pred CH
Confidence 43
No 68
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.83 E-value=1.2e-19 Score=93.07 Aligned_cols=72 Identities=25% Similarity=0.417 Sum_probs=67.9
Q ss_pred CCccccHHHHHHHHhccCCccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecCCCCC
Q 048030 1 VSFSTTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRR 75 (93)
Q Consensus 1 l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~~ 75 (93)
||+++++++|+++|+.| .|..+.++.+ .+|+.+|||||+|.+.++|.+|+. |++..+.|+.|.|.++.+++.
T Consensus 18 Lp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~a~~~~~ 89 (91)
T 2dgw_A 18 APFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFREKSGPS 89 (91)
T ss_dssp CCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEEESSCCC
T ss_pred CCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEECCcCCC
Confidence 78999999999999999 9999999998 689999999999999999999999 999999999999999987754
No 69
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.83 E-value=9.9e-20 Score=96.39 Aligned_cols=75 Identities=36% Similarity=0.540 Sum_probs=69.4
Q ss_pred CCccccHHHHHHHHhccCCccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecCCCCCC
Q 048030 1 VSFSTTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRY 76 (93)
Q Consensus 1 l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~~~ 76 (93)
||+++++++|+++|+.||.|.++.++.++.+|..+|||||+|.+.++|.+|+..+ +..+.|+.|.|.++.++...
T Consensus 33 Lp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~V~~a~~~~~~ 107 (109)
T 2rs2_A 33 LSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTIDPKVAFPRRAQ 107 (109)
T ss_dssp CCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEEEEECCCCCCC
T ss_pred CCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEEEEEccCCCCC
Confidence 6899999999999999999999999999889999999999999999999999976 58899999999999876543
No 70
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=8.3e-21 Score=101.12 Aligned_cols=75 Identities=29% Similarity=0.449 Sum_probs=70.3
Q ss_pred CCccccHHHHHHHHhccCCccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecCCCCCC
Q 048030 1 VSFSTTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRY 76 (93)
Q Consensus 1 l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~~~ 76 (93)
||+++++++|+++|+.||.|..+.++.++.++..+|||||+|.+.++|.+|+ .|++..+.|+.|.|.+++++..+
T Consensus 33 lp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~~~~~ 107 (114)
T 2cq4_A 33 LAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQASQAEKNR 107 (114)
T ss_dssp CCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEHHHHHHH
T ss_pred CCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEecCCCccC
Confidence 7889999999999999999999999999988999999999999999999999 89999999999999999765543
No 71
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.82 E-value=1.2e-19 Score=93.25 Aligned_cols=74 Identities=39% Similarity=0.488 Sum_probs=68.6
Q ss_pred CCccccHHHHHHHHhccCCccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecCCCCCC
Q 048030 1 VSFSTTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRY 76 (93)
Q Consensus 1 l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~~~ 76 (93)
||+++++++|+++|+.||.|..+.+..+ ++..+|||||+|.+.++|.+|+..|++..+.|+.|.|+++++....
T Consensus 16 lp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~~~~ 89 (92)
T 2dgv_A 16 LPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRIDRNASGP 89 (92)
T ss_dssp CCTTCCHHHHHHHHHTTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEECSCCSSC
T ss_pred CCCCCCHHHHHHHHHhcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCCCCCC
Confidence 7899999999999999999999999874 7889999999999999999999999999999999999999876543
No 72
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.82 E-value=1.2e-19 Score=102.14 Aligned_cols=77 Identities=22% Similarity=0.381 Sum_probs=71.0
Q ss_pred CCccccHHHHHHHHhccCCccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecCCCCCCC
Q 048030 1 VSFSTTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYN 77 (93)
Q Consensus 1 l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~~~~ 77 (93)
||+.+++++|+.+|+.||.|..+.++.++.+|..+|||||+|.+.++|..|+..||+..+.|+.|.|.++.++....
T Consensus 80 Lp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~~~ 156 (165)
T 1rk8_A 80 IHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCFVKGPKR 156 (165)
T ss_dssp CCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESEECC---
T ss_pred CCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEecCCCCCC
Confidence 78899999999999999999999999998899999999999999999999999999999999999999998765543
No 73
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.82 E-value=3.2e-20 Score=101.61 Aligned_cols=77 Identities=29% Similarity=0.569 Sum_probs=72.1
Q ss_pred CCccccHHHHHHHHhccCCccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecCCCCCCC
Q 048030 1 VSFSTTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYN 77 (93)
Q Consensus 1 l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~~~~ 77 (93)
||+++++++|+++|+.||.|..+.++.++.++..+|||||+|.+.++|.+|+..|++..+.|+.|.|.++++.....
T Consensus 55 Lp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~~~~~~ 131 (135)
T 2lea_A 55 LTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPPD 131 (135)
T ss_dssp CCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEECCCCCCCT
T ss_pred CCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCCCCc
Confidence 78999999999999999999999999998899999999999999999999999999999999999999998765443
No 74
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.82 E-value=1.7e-19 Score=91.79 Aligned_cols=69 Identities=38% Similarity=0.657 Sum_probs=65.1
Q ss_pred CCccccHHHHHHHHhccCCccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEec
Q 048030 1 VSFSTTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNV 70 (93)
Q Consensus 1 l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 70 (93)
||+++++++|+++|+.||.|..+.++.++.++..+|||||+|.+.++|.+|+. +++..+.|+.|.|+++
T Consensus 19 lp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~v~~A 87 (87)
T 3s7r_A 19 LSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVIDPKKA 87 (87)
T ss_dssp CCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEEEEEEC
T ss_pred CCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEEEEEeC
Confidence 78999999999999999999999999998899999999999999999999997 5788899999999875
No 75
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=4.6e-19 Score=92.79 Aligned_cols=75 Identities=27% Similarity=0.448 Sum_probs=69.1
Q ss_pred CCccccHHHHHHHHhccCCccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecCCCCCCC
Q 048030 1 VSFSTTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYN 77 (93)
Q Consensus 1 l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~~~~ 77 (93)
||+++++++|+.+|+.||.|..+.++.++.++..+|||||+|.+.++|.+|+. ++..+.|+.|.|.++.++....
T Consensus 23 lp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~v~~a~~~~~~~ 97 (103)
T 2cqg_A 23 LPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCDCKLPNSKQSQD 97 (103)
T ss_dssp CCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEEEECCCTTCCCC
T ss_pred CCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEEEEecCCCCcCC
Confidence 78999999999999999999999999998899999999999999999999999 4678999999999998775543
No 76
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=1e-19 Score=96.59 Aligned_cols=75 Identities=20% Similarity=0.295 Sum_probs=68.5
Q ss_pred CCccccHHHHH---HHHhccCCccEEEEeecCCCC---CcccEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecCCCC
Q 048030 1 VSFSTTKEMLA---DAFSQFGQVTEATIIMDKGKN---RSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSR 74 (93)
Q Consensus 1 l~~~~~~~~l~---~~f~~~g~i~~~~~~~~~~~~---~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~ 74 (93)
||+++++++|+ ++|+.||.|..+.++.++.++ ..+|||||+|.+.++|.+|+..||+..+.|+.|.|.++.++.
T Consensus 23 Lp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~a~~k~ 102 (111)
T 2cpi_A 23 LSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRTLKASLGTTKY 102 (111)
T ss_dssp ECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEESCCCCS
T ss_pred CCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCEEEEEEeccccc
Confidence 68899999999 999999999999998887643 456999999999999999999999999999999999998876
Q ss_pred C
Q 048030 75 R 75 (93)
Q Consensus 75 ~ 75 (93)
.
T Consensus 103 ~ 103 (111)
T 2cpi_A 103 C 103 (111)
T ss_dssp C
T ss_pred c
Confidence 4
No 77
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.82 E-value=1.1e-20 Score=96.89 Aligned_cols=74 Identities=31% Similarity=0.612 Sum_probs=66.7
Q ss_pred CCccccHHHHHHHHhccCCccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecCCCCC
Q 048030 1 VSFSTTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRR 75 (93)
Q Consensus 1 l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~~ 75 (93)
||.++++++|+++|+.||.|.++.++.++.++.++|||||+|.+.+ |..|+..|++..+.|+.|.|+++.+...
T Consensus 9 Lp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~~~ 82 (90)
T 2ki2_A 9 LVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPKKS 82 (90)
T ss_dssp ECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC-----
T ss_pred CCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCCCC
Confidence 6889999999999999999999999999888999999999999999 9999999999999999999999876543
No 78
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=8.5e-20 Score=95.84 Aligned_cols=70 Identities=17% Similarity=0.156 Sum_probs=66.3
Q ss_pred CCccccHHHHHHHHhccCCccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecCC
Q 048030 1 VSFSTTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRP 72 (93)
Q Consensus 1 l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~ 72 (93)
||+++++++|+++|+.||.|.++.++.++. +.++|||||+|.+.++|..|+. +++..+.|+.|.|.++..
T Consensus 19 Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~~~~ 88 (103)
T 1s79_A 19 FPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILFKDD 88 (103)
T ss_dssp CCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEEHHH
T ss_pred CCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEEchH
Confidence 789999999999999999999999999986 9999999999999999999999 899999999999998754
No 79
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=1.2e-19 Score=95.28 Aligned_cols=73 Identities=18% Similarity=0.285 Sum_probs=65.1
Q ss_pred CCccccHHHHHHHHhccCCccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCC--CeeCCeEEEEEecCCCCCCCC
Q 048030 1 VSFSTTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNG--KLLDGRVIFVDNVRPSRRYNT 78 (93)
Q Consensus 1 l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~--~~~~g~~l~v~~~~~~~~~~~ 78 (93)
||+++++++|+++|+.||.|.++.++.+ +|||||+|.+.++|..|+..|++ ..+.|++|.|.+++.+.....
T Consensus 24 Lp~~vte~dL~~lF~~fG~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~A~~~~~~~~ 97 (105)
T 1sjq_A 24 LPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNHKELKTD 97 (105)
T ss_dssp CCTTSCHHHHHHHHHHHCCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBCCCSSSSCCCT
T ss_pred CCCCCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEcCCCCCCcc
Confidence 7899999999999999999999999864 58999999999999999998874 679999999999987766554
Q ss_pred C
Q 048030 79 D 79 (93)
Q Consensus 79 ~ 79 (93)
.
T Consensus 98 ~ 98 (105)
T 1sjq_A 98 S 98 (105)
T ss_dssp T
T ss_pred c
Confidence 3
No 80
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.81 E-value=2.2e-20 Score=97.50 Aligned_cols=72 Identities=24% Similarity=0.440 Sum_probs=67.6
Q ss_pred CCccccHHHHHHHHhccCCccEEEEeecC-CCCCcccEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecCCCC
Q 048030 1 VSFSTTKEMLADAFSQFGQVTEATIIMDK-GKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSR 74 (93)
Q Consensus 1 l~~~~~~~~l~~~f~~~g~i~~~~~~~~~-~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~ 74 (93)
||+++++++|+++|+.|| |.++.++.++ .+|+.+|||||+|.+.++|.+|+ .|++..+.|+.|.|.+++++.
T Consensus 27 Lp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V~~a~~~~ 99 (100)
T 2j76_E 27 LPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRVDVADQAQ 99 (100)
T ss_dssp CSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCCEECCCSC
T ss_pred CCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEEEeccCCC
Confidence 688999999999999999 9999999987 58999999999999999999999 899999999999999988654
No 81
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.81 E-value=2.2e-19 Score=93.70 Aligned_cols=73 Identities=23% Similarity=0.402 Sum_probs=67.0
Q ss_pred CCccccHHHHHHHHhccCCccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecCCCCCCCC
Q 048030 1 VSFSTTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNT 78 (93)
Q Consensus 1 l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~~~~~ 78 (93)
||+++++++|+++|+.||.|..+.++.+ .+|||||+|.+.++|.+|+..|++..+.|+.|.|.+++++.....
T Consensus 8 Lp~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~~~~ 80 (101)
T 2hvz_A 8 LGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMPRRSR 80 (101)
T ss_dssp CCSSCSHHHHHHHHHHHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSCCCSSC
T ss_pred CCCCCCHHHHHHHHHhcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCCCCccc
Confidence 7899999999999999999999999876 678999999999999999999999999999999999988765443
No 82
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=5.4e-19 Score=93.39 Aligned_cols=74 Identities=18% Similarity=0.317 Sum_probs=66.9
Q ss_pred CCccccHHHHHHHHhccCCccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecCCCCCCC
Q 048030 1 VSFSTTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYN 77 (93)
Q Consensus 1 l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~~~~ 77 (93)
||+++++++|+++|+.||.|..+.+..+ +..++||||+|.+.++|.+|+..|++..+.|+.|.|.++++.....
T Consensus 30 Lp~~~t~~~l~~~F~~~G~v~~~~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~~~~ 103 (109)
T 1x4a_A 30 LPPDIRTKDIEDVFYKYGAIRDIDLKNR---RGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRSGRGTG 103 (109)
T ss_dssp CCTTCCHHHHHHHHGGGSCEEEEEECCS---SSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECCCCCCCCC
T ss_pred CCCCCCHHHHHHHHHhcCCeEEEEEEEC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcccCCCCC
Confidence 7899999999999999999999988553 4578999999999999999999999999999999999998776544
No 83
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.81 E-value=5.6e-20 Score=91.63 Aligned_cols=69 Identities=36% Similarity=0.562 Sum_probs=65.9
Q ss_pred CCccccHHHHHHHHhccCCccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEec
Q 048030 1 VSFSTTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNV 70 (93)
Q Consensus 1 l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 70 (93)
||+++++++|+++|+.||.|..+.++.++.++.++|||||+|.+.++|.+|+..++ ..+.|+.|.|+++
T Consensus 8 lp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 8 LSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 78999999999999999999999999998889999999999999999999999998 8899999999876
No 84
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.81 E-value=1.8e-19 Score=98.77 Aligned_cols=70 Identities=30% Similarity=0.513 Sum_probs=66.7
Q ss_pred CCccccHHHHHHHHhccCCccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEec
Q 048030 1 VSFSTTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNV 70 (93)
Q Consensus 1 l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 70 (93)
||+++++++|+++|+.||.|..+.++.++.++..+|||||+|.+.++|.+|+..|++..+.|+.|.|+++
T Consensus 71 lp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~A 140 (140)
T 2ku7_A 71 LAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 140 (140)
T ss_dssp CCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEEC-
T ss_pred CCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEeC
Confidence 7899999999999999999999999999889999999999999999999999999999999999999875
No 85
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=1.3e-20 Score=95.69 Aligned_cols=71 Identities=25% Similarity=0.450 Sum_probs=66.7
Q ss_pred CCccccHHHHHHHHhccCCccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecC
Q 048030 1 VSFSTTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVR 71 (93)
Q Consensus 1 l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 71 (93)
||+++++++|+++|+.||.|..+.++.++.++..+|||||+|.+.++|..|+..||+..+.|+.|++.+++
T Consensus 13 lp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~~ 83 (85)
T 1x4e_A 13 LQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGPS 83 (85)
T ss_dssp CCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCCC
T ss_pred CCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCCC
Confidence 78999999999999999999999999998899999999999999999999999999999999988877654
No 86
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.81 E-value=2e-19 Score=91.23 Aligned_cols=64 Identities=22% Similarity=0.318 Sum_probs=60.5
Q ss_pred CCccccHHHHHHHHhccCCccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEec
Q 048030 1 VSFSTTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNV 70 (93)
Q Consensus 1 l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 70 (93)
|++.+++++|+++|.+||+|.++.+.. ++|||||+|.+.++|.+|++.||+..+.|+.|+|..+
T Consensus 15 L~~~~te~~L~~lF~q~G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A 78 (89)
T 2wbr_A 15 LTAQIDGPTLRTLCMQHGPLVSFHPYL------NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESP 78 (89)
T ss_dssp CCTTCCCHHHHHHHHHHSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECC
T ss_pred CCccCCHHHHHHHHHhhCCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEEC
Confidence 688999999999999999999998854 5799999999999999999999999999999999987
No 87
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.80 E-value=1.3e-19 Score=106.79 Aligned_cols=71 Identities=24% Similarity=0.402 Sum_probs=68.7
Q ss_pred CCccccHHHHHHHHhccC--CccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecC
Q 048030 1 VSFSTTKEMLADAFSQFG--QVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVR 71 (93)
Q Consensus 1 l~~~~~~~~l~~~f~~~g--~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 71 (93)
||+++++++|+++|+.|| .|.+++|++++.+++++|||||+|.+.++|.+||..||+..|.|+.|.|.+++
T Consensus 76 L~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~a~ 148 (229)
T 3q2s_C 76 LTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPVN 148 (229)
T ss_dssp CCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEECC
T ss_pred CCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEECC
Confidence 789999999999999999 99999999999999999999999999999999999999999999999999875
No 88
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=3.3e-19 Score=94.35 Aligned_cols=71 Identities=32% Similarity=0.651 Sum_probs=66.4
Q ss_pred CCccccHHHHHHHHhccCCccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecCCC
Q 048030 1 VSFSTTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPS 73 (93)
Q Consensus 1 l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~ 73 (93)
||.++++++|+++|+.||.|..+.++.++ +..+|||||+|.+.++|.+|+..|++..++|+.|.|++++++
T Consensus 37 Lp~~~te~~l~~~F~~~G~i~~v~i~~~~--~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 107 (109)
T 2err_A 37 IPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATAR 107 (109)
T ss_dssp CCTTCCHHHHHHHGGGTCCCSCEEECCBT--TBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEECCCS
T ss_pred CCCcCCHHHHHHHHHhcCCEEEEEEEECC--CCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCC
Confidence 68899999999999999999999998885 458899999999999999999999999999999999998865
No 89
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.80 E-value=1.5e-18 Score=90.94 Aligned_cols=71 Identities=32% Similarity=0.586 Sum_probs=64.6
Q ss_pred CCccccHHHHHHHHhccCCccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecCCCCCCCCC
Q 048030 1 VSFSTTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNTD 79 (93)
Q Consensus 1 l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~~~~~~ 79 (93)
||+++++++|+++|+.||.|..+.++ ++||||+|.+.++|.+|+..|++..+.|+.|.|.+++++......
T Consensus 19 l~~~~t~~~l~~~F~~~G~i~~v~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~~~~ 89 (103)
T 2dgu_A 19 LANTVTEEILEKAFSQFGKLERVKKL--------KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKPPDQKRKE 89 (103)
T ss_dssp CCTTCCHHHHHHHHHHHSCEEEEEEC--------SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCCCCCCCCC
T ss_pred CCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEcCCCcccchh
Confidence 78999999999999999999999885 359999999999999999999999999999999999877665544
No 90
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=4.6e-19 Score=94.29 Aligned_cols=72 Identities=24% Similarity=0.494 Sum_probs=67.3
Q ss_pred CCccccHHHHHHHHhccCCccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCee--------CCeEEEEEecCC
Q 048030 1 VSFSTTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLL--------DGRVIFVDNVRP 72 (93)
Q Consensus 1 l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~--------~g~~l~v~~~~~ 72 (93)
||+++++++|+++|+.||.|..+.++.++ ++..+|||||+|.+.++|.+|+..||+..+ .+++|.|.++++
T Consensus 33 lp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~~~~l~v~~a~p 111 (114)
T 1x5o_A 33 LPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTEPLLCKFSGP 111 (114)
T ss_dssp CCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCSSCBEEEECCC
T ss_pred CCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCCCCceeEEccCC
Confidence 78999999999999999999999999998 899999999999999999999999999998 577899999875
Q ss_pred C
Q 048030 73 S 73 (93)
Q Consensus 73 ~ 73 (93)
.
T Consensus 112 ~ 112 (114)
T 1x5o_A 112 S 112 (114)
T ss_dssp S
T ss_pred C
Confidence 4
No 91
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=7.2e-19 Score=91.19 Aligned_cols=69 Identities=25% Similarity=0.403 Sum_probs=63.6
Q ss_pred CCccccHHHHHHHHhccCCccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeC--CeEEEEEecCCCCC
Q 048030 1 VSFSTTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLD--GRVIFVDNVRPSRR 75 (93)
Q Consensus 1 l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~--g~~l~v~~~~~~~~ 75 (93)
||+++++++|+++|+.||.|.++.+..+ ++||||+|.+.++|.+|+..||+..+. |+.|.|.++++++.
T Consensus 25 lp~~~t~~~l~~~F~~~G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~a~~~~~ 95 (97)
T 1why_A 25 LGPNTSLAALAREFDRFGSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDFAKSGPS 95 (97)
T ss_dssp CCSSCCHHHHHHHHHTTSCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEECCCCCC
T ss_pred CCCCCCHHHHHHHHHhcCCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEEECCCCCC
Confidence 7889999999999999999999988643 579999999999999999999999999 99999999988754
No 92
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=6.2e-19 Score=92.00 Aligned_cols=73 Identities=29% Similarity=0.517 Sum_probs=65.2
Q ss_pred CCccccHHHHHHHHhccCCccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecCCCCCCC
Q 048030 1 VSFSTTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYN 77 (93)
Q Consensus 1 l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~~~~ 77 (93)
||+++++++|+++|+.||.| .++.+ .+++.+|||||+|.+.++|.+|+..|++..+.|+.|.|.+++++....
T Consensus 23 Lp~~~t~~~l~~~F~~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~~~ 95 (101)
T 2fc9_A 23 LSYSATEETLQEVFEKATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPRGSPN 95 (101)
T ss_dssp CCTTCCHHHHHHHCSSCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEECSSCCCCC
T ss_pred CCCCCCHHHHHHHHHhCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEEcCCCCCCC
Confidence 78999999999999999976 55555 578899999999999999999999999999999999999998775443
No 93
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=1.1e-18 Score=92.21 Aligned_cols=71 Identities=31% Similarity=0.554 Sum_probs=65.5
Q ss_pred CCccccHHHHHHHHhccCCccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecCCCCCCC
Q 048030 1 VSFSTTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYN 77 (93)
Q Consensus 1 l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~~~~ 77 (93)
||.++++++|+.+|+.||.|..+.++.+ +|||||+|.+.++|.+|+..|++..+.|+.|.|.+++++....
T Consensus 33 l~~~~t~~~l~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~~ 103 (109)
T 1x4g_A 33 IASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKESPDMT 103 (109)
T ss_dssp CSSCCCHHHHHHHHHHHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCCCCCSSC
T ss_pred CCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEecCCCCCCC
Confidence 7889999999999999999999998765 5899999999999999999999999999999999998876544
No 94
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.80 E-value=4.4e-19 Score=95.08 Aligned_cols=71 Identities=20% Similarity=0.285 Sum_probs=66.7
Q ss_pred CCccccHHHHHHHHhccCC---ccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecCCC
Q 048030 1 VSFSTTKEMLADAFSQFGQ---VTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPS 73 (93)
Q Consensus 1 l~~~~~~~~l~~~f~~~g~---i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~ 73 (93)
||+++++++|+++|+.||. |..++++.++. |+.+|||||+|.+.++|.+|+. +++..++|+.|.|.++..+
T Consensus 25 Lp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~a~~~ 98 (118)
T 2db1_A 25 LPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALK-KDRESMGHRYIEVFKSHRT 98 (118)
T ss_dssp CCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEEEEEECHH
T ss_pred CCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEEEEECCHH
Confidence 7899999999999999999 89999999985 9999999999999999999999 9999999999999998644
No 95
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=2.5e-18 Score=90.80 Aligned_cols=70 Identities=23% Similarity=0.256 Sum_probs=64.5
Q ss_pred CCccccHHHHHHHHhccCCccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeCC-----eEEEEEecCCCCC
Q 048030 1 VSFSTTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDG-----RVIFVDNVRPSRR 75 (93)
Q Consensus 1 l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g-----~~l~v~~~~~~~~ 75 (93)
||+++++++|+++|+.||.|..+.++.+ +||||+|.+.++|.+|+..||+..+.| +.|.|.+++++..
T Consensus 23 Lp~~~t~~~l~~~F~~~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~V~~a~~~~~ 95 (108)
T 1x4c_A 23 LPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVDGPRSP 95 (108)
T ss_dssp CCSSCCHHHHHHHHGGGSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEEEEESSCCSC
T ss_pred CCCCCCHHHHHHHHHhcCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEEEEeCCCCCC
Confidence 7899999999999999999999999765 799999999999999999999999999 9999999987654
Q ss_pred CC
Q 048030 76 YN 77 (93)
Q Consensus 76 ~~ 77 (93)
..
T Consensus 96 ~~ 97 (108)
T 1x4c_A 96 SY 97 (108)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 96
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=1.4e-18 Score=90.79 Aligned_cols=75 Identities=32% Similarity=0.523 Sum_probs=68.1
Q ss_pred CCccccHHHHHHHHhccCCccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecCCCCCCCC
Q 048030 1 VSFSTTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNT 78 (93)
Q Consensus 1 l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~~~~~ 78 (93)
||+++++++|+++|+.| ..+.++.++.++..+|||||+|.+.++|.+|+..|++..+.|+.|.|.+++++.....
T Consensus 23 Lp~~~t~~~l~~~F~~~---~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~~~~~ 97 (102)
T 2fc8_A 23 LSEDTTEETLKESFDGS---VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPKGEGGS 97 (102)
T ss_dssp CCTTCCHHHHHHTSTTC---SEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCCCCSSSC
T ss_pred CCCccCHHHHHHHhcCC---eEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEecCCCCCCC
Confidence 78999999999999977 3678888888999999999999999999999999999999999999999988766543
No 97
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=1.6e-18 Score=88.76 Aligned_cols=69 Identities=26% Similarity=0.464 Sum_probs=63.7
Q ss_pred CCccccHHHHHHHHhccCCccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecCCCCCCC
Q 048030 1 VSFSTTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYN 77 (93)
Q Consensus 1 l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~~~~ 77 (93)
||.++++++|+++|+.||.|..+.+. ++||||+|.+.++|.+|+..|++..+.|++|.|++++++....
T Consensus 16 lp~~~t~~~l~~~F~~~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~~~ 84 (90)
T 2dnq_A 16 LPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEASKNKSKAS 84 (90)
T ss_dssp CCSSCCHHHHHHHHHTSSCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECSSCCCCCC
T ss_pred CCCCCCHHHHHHHHHhCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEECCCCCCCC
Confidence 78999999999999999999999886 4799999999999999999999999999999999998776544
No 98
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=3.7e-19 Score=93.22 Aligned_cols=72 Identities=19% Similarity=0.243 Sum_probs=65.9
Q ss_pred CCccccHHHHHHHHhccCCccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecCCCCC
Q 048030 1 VSFSTTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRR 75 (93)
Q Consensus 1 l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~~ 75 (93)
||+++++++|+++|+.||. ..+.++.++ +++++|||||+|.+.++|.+|+. +++..+.|+.|.|..+.....
T Consensus 23 Lp~~~te~~l~~~F~~~G~-~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~~~~~~~~ 94 (102)
T 1wez_A 23 LPYRATENDIYNFFSPLNP-MRVHIEIGP-DGRVTGEADVEFATHEDAVAAMA-KDKANMQHRYVELFLNSTAGT 94 (102)
T ss_dssp CCTTCCHHHHHHSSCSCCC-SEEEEEESS-SSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSSCCEEEEECCCCC
T ss_pred CCCCCCHHHHHHHHHHcCc-eEEEEEECC-CCCEeeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEECCCCCC
Confidence 7999999999999999994 599999998 89999999999999999999995 799999999999998876543
No 99
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.67 E-value=5.3e-21 Score=102.19 Aligned_cols=79 Identities=25% Similarity=0.352 Sum_probs=73.2
Q ss_pred CCccccHHHHHHHHhccCCccE--------EEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecCC
Q 048030 1 VSFSTTKEMLADAFSQFGQVTE--------ATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRP 72 (93)
Q Consensus 1 l~~~~~~~~l~~~f~~~g~i~~--------~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~ 72 (93)
||.++++++|+++|+.||.|.. +.++.++.++..+|||||+|.+.++|.+|+..|++..+.|+.|.|.++++
T Consensus 15 Lp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 94 (116)
T 2lcw_A 15 LGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSGNPIKVSFATR 94 (116)
Confidence 6889999999999999999998 88999888899999999999999999999999999999999999999988
Q ss_pred CCCCCCC
Q 048030 73 SRRYNTD 79 (93)
Q Consensus 73 ~~~~~~~ 79 (93)
+....+.
T Consensus 95 ~~~~~~g 101 (116)
T 2lcw_A 95 RADFNRG 101 (116)
Confidence 8766554
No 100
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.79 E-value=1.5e-18 Score=100.57 Aligned_cols=76 Identities=24% Similarity=0.419 Sum_probs=71.5
Q ss_pred CCccccHHHHHHHHhccCCccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecCCCCCC
Q 048030 1 VSFSTTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRY 76 (93)
Q Consensus 1 l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~~~ 76 (93)
||.++++++|+++|+.||.|..+.++.++.++..+|||||+|.+.++|.+|+..||+..++|+.|.|.++.+.+..
T Consensus 133 lp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a~~~~~~ 208 (216)
T 2qfj_A 133 VHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAVTPPMP 208 (216)
T ss_dssp CCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEECSSCSST
T ss_pred CCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEecCCCCC
Confidence 6889999999999999999999999999889999999999999999999999999999999999999998876433
No 101
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=1.1e-18 Score=93.49 Aligned_cols=72 Identities=18% Similarity=0.286 Sum_probs=64.6
Q ss_pred CCccccHHHHHHHHhccCCccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCC--CeeCCeEEEEEecCCCCCCCC
Q 048030 1 VSFSTTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNG--KLLDGRVIFVDNVRPSRRYNT 78 (93)
Q Consensus 1 l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~--~~~~g~~l~v~~~~~~~~~~~ 78 (93)
||+++++++|+++|+.||.|.++.++.+ +|||||+|.+.++|.+|+..|++ ..+.|++|.|.+++.+.....
T Consensus 39 Lp~~vte~dL~~lF~~fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~~a~~k~~~~~ 112 (119)
T 2ad9_A 39 LPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNHKELKTD 112 (119)
T ss_dssp CCTTCCHHHHHHHHTTTSCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEEECSSSSCCCC
T ss_pred CCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEEEccCCCCCcc
Confidence 7899999999999999999999999865 58999999999999999998874 579999999999987765554
No 102
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.79 E-value=6.1e-19 Score=93.62 Aligned_cols=70 Identities=21% Similarity=0.215 Sum_probs=62.4
Q ss_pred CCccccHHHHHHHHhccC-CccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecCCCC
Q 048030 1 VSFSTTKEMLADAFSQFG-QVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSR 74 (93)
Q Consensus 1 l~~~~~~~~l~~~f~~~g-~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~ 74 (93)
||+++++++|+++|+.|| .|..+.+.. ...+|||||+|.+.++|.+|+..||+..+.|+.|.|++++..+
T Consensus 36 Lp~~~te~dL~~~F~~~G~~v~~v~i~~----~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a~~~p 106 (111)
T 2jvr_A 36 LPEGCSWQDLKDLARENSLETTFSSVNT----RDFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERDDNPP 106 (111)
T ss_dssp SSCCCCHHHHHHHHHHHTCCCSEEECSS----CSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEESCC--
T ss_pred CCCCCCHHHHHHHHHHhCCeeEEEEEEc----CCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCCCC
Confidence 789999999999999999 899988753 2478999999999999999999999999999999999987554
No 103
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.79 E-value=4e-19 Score=97.33 Aligned_cols=70 Identities=19% Similarity=0.273 Sum_probs=66.2
Q ss_pred CCccccHHHHHHHHhccCC---ccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecCC
Q 048030 1 VSFSTTKEMLADAFSQFGQ---VTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRP 72 (93)
Q Consensus 1 l~~~~~~~~l~~~f~~~g~---i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~ 72 (93)
||+++++++|+++|+.||. |..+.++.++. |+++|||||+|.+.++|.+|+. |++..+.|+.|.|.++..
T Consensus 52 Lp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i~V~~a~~ 124 (136)
T 2hgl_A 52 LPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALK-KDRESMGHRYIEVFKSHR 124 (136)
T ss_dssp CCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEEEEEECCH
T ss_pred CCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEEEEEECCh
Confidence 7999999999999999999 88999999986 9999999999999999999999 999999999999998754
No 104
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=4.4e-19 Score=94.53 Aligned_cols=72 Identities=25% Similarity=0.345 Sum_probs=67.7
Q ss_pred CCccccHHHHHHHHhccCCc-cEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecCCCC
Q 048030 1 VSFSTTKEMLADAFSQFGQV-TEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSR 74 (93)
Q Consensus 1 l~~~~~~~~l~~~f~~~g~i-~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~ 74 (93)
||+++++++|+++|+.||.| ..+.++.++ ++..+|||||+|.+.++|.+|+.. ++..+.|+.|.|.++..+.
T Consensus 23 Lp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~~a~~~~ 95 (114)
T 2cpy_A 23 IPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFVHVVTLED 95 (114)
T ss_dssp CCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEEEECHHH
T ss_pred cCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEEEECCHHH
Confidence 78999999999999999999 899999998 999999999999999999999996 9999999999999997554
No 105
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.79 E-value=2.1e-18 Score=96.29 Aligned_cols=72 Identities=28% Similarity=0.571 Sum_probs=68.9
Q ss_pred CCccccHHHHHHHHhccCCccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecCC
Q 048030 1 VSFSTTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRP 72 (93)
Q Consensus 1 l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~ 72 (93)
||.++++++|+++|+.||.|..+.++.++.++..+|+|||+|.+.++|.+|+..||+..+.|++|.|.+++.
T Consensus 95 l~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~ 166 (166)
T 3md3_A 95 LNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 166 (166)
T ss_dssp CCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESCC
T ss_pred CCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEecCC
Confidence 688999999999999999999999999988999999999999999999999999999999999999999863
No 106
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.79 E-value=1.5e-18 Score=90.41 Aligned_cols=68 Identities=18% Similarity=0.259 Sum_probs=61.9
Q ss_pred CCccccHHHHHHHHhccCCccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCe--eCCeEEEEEecCCCC
Q 048030 1 VSFSTTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKL--LDGRVIFVDNVRPSR 74 (93)
Q Consensus 1 l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~--~~g~~l~v~~~~~~~ 74 (93)
||+++++++|+++|+.||.|.++.+++ .+|+|||+|.+.++|.+|+..|++.. +.|++|.|.+++++.
T Consensus 29 Lp~~~te~~L~~lF~~fG~V~~v~i~~------~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~~S~~k~ 98 (100)
T 3r27_A 29 LIDGVVEADLVEALQEFGPISYVVVMP------KKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNYSTSQK 98 (100)
T ss_dssp CCTTCCHHHHHHHHGGGSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEEECSCSC
T ss_pred CCCCCCHHHHHHHHhccCCEEEEEEEc------CCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEEeccccc
Confidence 789999999999999999999998874 35899999999999999999999876 789999999998764
No 107
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.78 E-value=5.3e-19 Score=92.99 Aligned_cols=73 Identities=22% Similarity=0.386 Sum_probs=65.7
Q ss_pred CCccc------cHHHHHHHHhccCCccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeCCe-EEEEEecCCC
Q 048030 1 VSFST------TKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGR-VIFVDNVRPS 73 (93)
Q Consensus 1 l~~~~------~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~-~l~v~~~~~~ 73 (93)
||+.+ ++++|+.+|+.||.|..+.++ +.+|.++|||||+|.+.++|.+|+..|||..+.|+ .|.|.++...
T Consensus 23 Lp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~--~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~l~V~~a~~~ 100 (105)
T 2nlw_A 23 VPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRVNLFTDF 100 (105)
T ss_dssp CCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC--CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTCEEEEECSCCC
T ss_pred CCcchhhhhHHHHHHHHHHHhcCCCEEEEEee--CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCceEEEEEcchH
Confidence 57777 789999999999999999887 35889999999999999999999999999999998 9999998765
Q ss_pred CC
Q 048030 74 RR 75 (93)
Q Consensus 74 ~~ 75 (93)
..
T Consensus 101 ~k 102 (105)
T 2nlw_A 101 DK 102 (105)
T ss_dssp CC
T ss_pred hh
Confidence 43
No 108
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=5.2e-18 Score=87.16 Aligned_cols=70 Identities=23% Similarity=0.429 Sum_probs=63.8
Q ss_pred CCccccHHHHHHHHhccCCccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecCCCCCCCC
Q 048030 1 VSFSTTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNT 78 (93)
Q Consensus 1 l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~~~~~ 78 (93)
||+++++++|+++|+.||.|..+.+++ +||||+|.+.++|.+|+..|++..+.|+.|.|.+++++.....
T Consensus 18 Lp~~~t~~~l~~~F~~~G~v~~v~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~~~~ 87 (92)
T 2dgt_A 18 ISPTCTNQELRAKFEEYGPVIECDIVK--------DYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAS 87 (92)
T ss_dssp CCSSCCHHHHHHHHHTTSCCCEEEECS--------SEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEESSCCCSCCC
T ss_pred CCCCCCHHHHHHHHHhcCCeEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEccCCCCCCC
Confidence 789999999999999999999999863 3999999999999999999999999999999999987765443
No 109
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.78 E-value=5.5e-20 Score=96.03 Aligned_cols=74 Identities=20% Similarity=0.313 Sum_probs=66.9
Q ss_pred CCccccHHHHHHHHhccCCccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecCCCCCC
Q 048030 1 VSFSTTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRY 76 (93)
Q Consensus 1 l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~~~ 76 (93)
||+++++++|+++|+.||.+.. .++.+..++.++|||||+|.+.++|.+|+. |++..+.|+.|.|.+++++...
T Consensus 25 Lp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~a~~~~~~ 98 (101)
T 1fj7_A 25 LNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKPKGRDGT 98 (101)
T ss_dssp CCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEECCSCCCCS
T ss_pred CCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEEcCCCCCC
Confidence 7899999999999999999877 566666678899999999999999999999 9999999999999999876544
No 110
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.78 E-value=1.6e-19 Score=89.59 Aligned_cols=69 Identities=23% Similarity=0.377 Sum_probs=64.9
Q ss_pred CCccccHHHHHHHHhccCCccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEec
Q 048030 1 VSFSTTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNV 70 (93)
Q Consensus 1 l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 70 (93)
||+++++++|+++|+.||.|..+.++.++.++.++|||||+|.+.++|.+|+. +++..+.|+.|.|+++
T Consensus 7 Lp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~-~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 7 LSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME-KKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHT-TSSCCBTTBCCCEEEC
T ss_pred CCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHH-hCCCeECCEEEEEEEC
Confidence 78999999999999999999999999998899999999999999999999999 4888999999999864
No 111
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.78 E-value=2.2e-18 Score=91.10 Aligned_cols=68 Identities=24% Similarity=0.476 Sum_probs=62.3
Q ss_pred CCccccHHHHHHHHhccCCccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecCCCCCC
Q 048030 1 VSFSTTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRY 76 (93)
Q Consensus 1 l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~~~ 76 (93)
||.++++++|+++|+.||.|..+.+. +|||||+|.+.++|.+|+..|++..+.|+.|.|.++++...+
T Consensus 39 Lp~~~t~~~L~~~F~~~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~r 106 (108)
T 2jvo_A 39 FPLDVQESELNEIFGPFGPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVYSKLPAKR 106 (108)
T ss_dssp SCTTCCHHHHHHHHTTTSCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEESCSCCC--
T ss_pred CCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecCCCCC
Confidence 68899999999999999999999886 589999999999999999999999999999999999876543
No 112
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=2.1e-19 Score=95.74 Aligned_cols=78 Identities=23% Similarity=0.361 Sum_probs=65.8
Q ss_pred CCccccHHHHHHHHhccCCccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecCCCCCCCC
Q 048030 1 VSFSTTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNT 78 (93)
Q Consensus 1 l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~~~~~ 78 (93)
||+++++++|+++|+.||.|..+.+..+..++..+|||||+|.+.++|..|+..|++..+.|+.|.|.+++++.....
T Consensus 33 Lp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~~~~~~~~ 110 (115)
T 2cpx_A 33 LSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEFGKNKKQRSS 110 (115)
T ss_dssp CCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEECCCCSCCCC
T ss_pred CCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEccCCCCCCC
Confidence 788999999999999999984432222222788899999999999999999999999999999999999987765443
No 113
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=4.2e-18 Score=89.07 Aligned_cols=71 Identities=17% Similarity=0.202 Sum_probs=62.9
Q ss_pred CCccccHHHHHHHHhccCCccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhC--CCeeCCeEEEEEecCCCCCCC
Q 048030 1 VSFSTTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMN--GKLLDGRVIFVDNVRPSRRYN 77 (93)
Q Consensus 1 l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~--~~~~~g~~l~v~~~~~~~~~~ 77 (93)
||+++++++|+.+|+.||.|..+.++.+ +|||||+|.+.++|..|+..|+ +..+.|++|.|.+++.+....
T Consensus 23 Lp~~~te~~L~~~F~~fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~~~~~~~ 95 (101)
T 2cq1_A 23 LPGEVTETEVIALGLPFGKVTNILMLKG------KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQYSNHKELKT 95 (101)
T ss_dssp CCTTCCHHHHHHTTTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEECSCSSCCC
T ss_pred CCCCCCHHHHHHHHHhcCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEEEcCcccCcC
Confidence 7899999999999999999999988754 6899999999999999999774 567999999999998766544
No 114
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=2.5e-18 Score=91.06 Aligned_cols=69 Identities=25% Similarity=0.378 Sum_probs=64.3
Q ss_pred CCccccHHHHHHHHhccCCccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecCC
Q 048030 1 VSFSTTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRP 72 (93)
Q Consensus 1 l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~ 72 (93)
||+++++++|+++|+.| .|.++.++.++. |+.+|||||+|.+.++|.+|+ .+++..++|+.|.|..+..
T Consensus 24 Lp~~~te~dl~~~F~~~-~v~~v~i~~d~~-g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a~~ 92 (109)
T 2dnn_A 24 MPFSAMENDVRDFFHGL-RVDAVHLLKDHV-GRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPATE 92 (109)
T ss_dssp CCSSCCHHHHHHHTTTS-CCCEEEECCCTT-CCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEECCH
T ss_pred CCCCCCHHHHHHHhccC-CeeEEEEEECCC-CCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECCc
Confidence 79999999999999999 899999999874 999999999999999999999 5999999999999988754
No 115
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=1.6e-18 Score=91.00 Aligned_cols=72 Identities=28% Similarity=0.385 Sum_probs=66.1
Q ss_pred CCccccHHHHHHHHhccCCccE-EEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecCCCC
Q 048030 1 VSFSTTKEMLADAFSQFGQVTE-ATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSR 74 (93)
Q Consensus 1 l~~~~~~~~l~~~f~~~g~i~~-~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~ 74 (93)
||+++++++|+++|+.||.|.. +.++.+ .+++.+|||||+|.+.++|.+|+.. ++..++|+.|.|..+....
T Consensus 23 Lp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~~~~~~~ 95 (104)
T 1wg5_A 23 LPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIFKSSRAE 95 (104)
T ss_dssp CCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEEEECTTT
T ss_pred CCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEEECCHHH
Confidence 7999999999999999999987 888888 6899999999999999999999997 9999999999999886543
No 116
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.78 E-value=5e-18 Score=94.81 Aligned_cols=75 Identities=29% Similarity=0.525 Sum_probs=71.1
Q ss_pred CCccccHHHHHHHHhccCCccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecCCCCC
Q 048030 1 VSFSTTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRR 75 (93)
Q Consensus 1 l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~~ 75 (93)
||+++++++|+++|+.||.|.++.++.++.+|..+|||||+|.+.++|..|+..|++..+.|+.|.|.++.+...
T Consensus 10 lp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~~~ 84 (167)
T 1fxl_A 10 LPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSA 84 (167)
T ss_dssp CCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCCG
T ss_pred CCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCCCcc
Confidence 789999999999999999999999999988999999999999999999999999999999999999999886654
No 117
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=2.5e-19 Score=96.73 Aligned_cols=72 Identities=21% Similarity=0.392 Sum_probs=66.4
Q ss_pred CCccccHHHHHHHHhccCCccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecCCC
Q 048030 1 VSFSTTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPS 73 (93)
Q Consensus 1 l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~ 73 (93)
||+++++++|+.+|+.||.|..+.++.+..++..+|||||+|.+.++|.+|+. |++..++|+.|.|.++..+
T Consensus 33 Lp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~a~~~ 104 (124)
T 1wel_A 33 LPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHPITKK 104 (124)
T ss_dssp CCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEEECHH
T ss_pred CCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEECCHH
Confidence 78999999999999999999886666666799999999999999999999999 9999999999999998754
No 118
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=2.8e-18 Score=90.18 Aligned_cols=70 Identities=17% Similarity=0.246 Sum_probs=62.2
Q ss_pred CCccccHHHHHHHHhccCCccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCC--eeCCeEEEEEecCCCCCC
Q 048030 1 VSFSTTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGK--LLDGRVIFVDNVRPSRRY 76 (93)
Q Consensus 1 l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~--~~~g~~l~v~~~~~~~~~ 76 (93)
||+++++++|+++|+.||.|..+.++.+ +|||||+|.+.++|.+|+..|++. .+.|++|.|.+++.+...
T Consensus 23 Lp~~~te~~L~~~F~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~a~~~~~~ 94 (104)
T 1wex_A 23 LCESVVEADLVEALEKFGTICYVMMMPF------KRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNYSTSKRIT 94 (104)
T ss_dssp CCSSCCHHHHHHHHTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEECSSSSCC
T ss_pred CCCCCCHHHHHHHHHhCCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEccCcccc
Confidence 7899999999999999999999988653 589999999999999999988765 489999999999876544
No 119
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.77 E-value=3.1e-18 Score=98.16 Aligned_cols=75 Identities=17% Similarity=0.395 Sum_probs=71.1
Q ss_pred CCccccHHHHHHHHhccCCccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecCCCCC
Q 048030 1 VSFSTTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRR 75 (93)
Q Consensus 1 l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~~ 75 (93)
||+.+++++|+++|+.||.|..+.++.++.++..+|||||+|.+.++|.+|+..|++..+.|+.|.|.+++++..
T Consensus 122 l~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 196 (198)
T 2yh0_A 122 LPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGAK 196 (198)
T ss_dssp CCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEESCCCCC
T ss_pred CCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCCC
Confidence 688999999999999999999999999988999999999999999999999999999999999999999987654
No 120
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.77 E-value=2e-18 Score=93.02 Aligned_cols=71 Identities=11% Similarity=0.156 Sum_probs=63.7
Q ss_pred CccccHHHHHHHHhccCCccEEEEeecCCCCCcccEEEEEecC----HHH----HHHHHH--HhCCCeeCCeEEEEEecC
Q 048030 2 SFSTTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFST----EEE----AQKALA--DMNGKLLDGRVIFVDNVR 71 (93)
Q Consensus 2 ~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~----~~~----a~~a~~--~l~~~~~~g~~l~v~~~~ 71 (93)
|+.+++.+|+.+|+.||.|.++.++.|+.||.++||+||.|.+ ... |.+|+. .|++..|+|+.|+|...+
T Consensus 15 ~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~I~Gr~irV~ln~ 94 (136)
T 2j8a_A 15 TTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCFIMGFKFEVILNK 94 (136)
T ss_dssp CCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEEETTEEEEEEECC
T ss_pred CCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCeecCcEEEEEECc
Confidence 8899999999999999999999999999999999999999996 333 788888 789999999999999765
Q ss_pred C
Q 048030 72 P 72 (93)
Q Consensus 72 ~ 72 (93)
.
T Consensus 95 ~ 95 (136)
T 2j8a_A 95 H 95 (136)
T ss_dssp T
T ss_pred c
Confidence 4
No 121
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.77 E-value=1.9e-18 Score=90.16 Aligned_cols=67 Identities=18% Similarity=0.290 Sum_probs=61.9
Q ss_pred CCccccHHHHHHHHhccCCccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecCCC
Q 048030 1 VSFSTTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPS 73 (93)
Q Consensus 1 l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~ 73 (93)
||.++++++|+.+|+.||.|.++++. ..+|||||+|.+.++|..|+..|++..++|+.|.|.+++++
T Consensus 35 lp~~~~~~~l~~~f~~~G~i~~~~~~------~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 101 (101)
T 2la4_A 35 IPHFATEADLIPLFQNFGFILDFKHY------PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGKER 101 (101)
T ss_dssp CCTTCCHHHHHHHHHTTSCCSEEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCCCC
T ss_pred CCcccCHHHHHHHHHhCCCEEEEEEe------cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEeccCC
Confidence 68899999999999999999999886 35689999999999999999999999999999999998753
No 122
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.77 E-value=2.1e-18 Score=98.17 Aligned_cols=74 Identities=27% Similarity=0.454 Sum_probs=69.6
Q ss_pred CCccccHHHHHHHHhccCCccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecCCCCC
Q 048030 1 VSFSTTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRR 75 (93)
Q Consensus 1 l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~~ 75 (93)
||+++++++|+++|+.||.|..+.++.++ ++..+|||||+|.+.++|.+|+..|++..+.|+.|.|.++.....
T Consensus 96 Lp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~a~~~~~ 169 (177)
T 2f3j_A 96 LDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVASQID 169 (177)
T ss_dssp CCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEEESSGGG
T ss_pred CCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEecCCCC
Confidence 68899999999999999999999999988 899999999999999999999999999999999999999876543
No 123
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.77 E-value=4.9e-18 Score=95.05 Aligned_cols=76 Identities=25% Similarity=0.417 Sum_probs=71.5
Q ss_pred CCccccHHHHHHHHhccCCccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecCCCCCC
Q 048030 1 VSFSTTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRY 76 (93)
Q Consensus 1 l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~~~ 76 (93)
||+++++++|+++|+.||.|.++.++.++.++.++|||||+|.+.++|..|+..|++..+.|+.|.|.++.+....
T Consensus 11 lp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~~~~ 86 (168)
T 1b7f_A 11 LPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYARPGGES 86 (168)
T ss_dssp CCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCSST
T ss_pred CCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecCCCccc
Confidence 7899999999999999999999999999889999999999999999999999999999999999999999876543
No 124
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=3.5e-18 Score=88.88 Aligned_cols=70 Identities=24% Similarity=0.384 Sum_probs=64.2
Q ss_pred CCccccHHHHHHHHhccCCccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecCCCCCC
Q 048030 1 VSFSTTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRY 76 (93)
Q Consensus 1 l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~~~ 76 (93)
||+++++++|+.+|+.||.|..+.+..+ ++||||+|.+.++|.+|+..|++..+.|++|.|.+++++...
T Consensus 23 lp~~~t~~~l~~~F~~~G~i~~v~~~~~------kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~~~~ 92 (99)
T 2cpj_A 23 LPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFACHSASL 92 (99)
T ss_dssp CCTTCCHHHHHHHTSTTCCCSEEEEETT------TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEESSCCSCC
T ss_pred CCCCCCHHHHHHHHhhcCCeEEEEEecC------CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEcCCCCCC
Confidence 6889999999999999999999998753 589999999999999999999999999999999999876543
No 125
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=1.3e-18 Score=91.13 Aligned_cols=69 Identities=19% Similarity=0.263 Sum_probs=61.8
Q ss_pred CCc-cccHHHHHHHHhccCCccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCC--eeCCeEEEEEecCCCCC
Q 048030 1 VSF-STTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGK--LLDGRVIFVDNVRPSRR 75 (93)
Q Consensus 1 l~~-~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~--~~~g~~l~v~~~~~~~~ 75 (93)
||+ ++++++|+.+|+.||.|.++.++.++ +||||+|.+.++|..|+..|++. .+.|++|.|.+++....
T Consensus 23 Lp~~~~te~dL~~lF~~fG~V~~v~i~~~k------g~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~~~~~ 94 (102)
T 1x4d_A 23 FQRGKNLRYQLLQLVEPFGVISNHLILNKI------NEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVHLSQKYKR 94 (102)
T ss_dssp CCCSSSHHHHHHTTTGGGSCEEEEEECSSS------SCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEEECCCTT
T ss_pred CCCCcCCHHHHHHHHHhcCCEEEEEEEcCC------CEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEEECCCCCC
Confidence 788 99999999999999999999997653 79999999999999999999865 49999999999986543
No 126
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.77 E-value=2.2e-18 Score=93.43 Aligned_cols=72 Identities=19% Similarity=0.346 Sum_probs=64.0
Q ss_pred CCccccHHHHH----HHHhccCCccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecCCCCC
Q 048030 1 VSFSTTKEMLA----DAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRR 75 (93)
Q Consensus 1 l~~~~~~~~l~----~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~~ 75 (93)
||+.+++++|+ ++|+.||.|.+|.+.. +++.+|||||+|.+.++|..|+..|||..+.|+.|.|.+++.+..
T Consensus 37 L~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~---~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~V~~a~~~~~ 112 (127)
T 2a3j_A 37 INPEVPKEKLQALLYALASSQGDILDIVVDL---SDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLVITFSETPQS 112 (127)
T ss_dssp CCTTSCHHHHHHHHHHHHHHHSCEEEEEECC---CCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCEEEECCCCCH
T ss_pred CCCCCCHHHHHHHHHHHhccCCCeEEEEecc---CCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEEEEEccCcch
Confidence 68889998866 6899999998887743 678899999999999999999999999999999999999987644
No 127
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=2.9e-18 Score=88.91 Aligned_cols=70 Identities=17% Similarity=0.267 Sum_probs=62.9
Q ss_pred CCccccHHHHHHHHhccCCccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecCCCCC
Q 048030 1 VSFSTTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRR 75 (93)
Q Consensus 1 l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~~ 75 (93)
||+++++++|+++|+.||.|. +.++.+ ..+|||||+|.+.++|..|+..||+..+.|+.|.|.++++++.
T Consensus 27 L~~~~t~~~l~~~F~~~G~v~-~~~~~~----~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~ 96 (97)
T 2e5j_A 27 LPRDARVSDLKRALRELGSVP-LRLTWQ----GPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALARQQRD 96 (97)
T ss_dssp CCTTCCHHHHHHHHHHTTCCC-SEEEEE----TTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEECCCCCC
T ss_pred CCCcCcHHHHHHHHHhcCCEE-EEEEcC----CCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCCCCC
Confidence 789999999999999999996 666654 5778999999999999999999999999999999999987653
No 128
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.77 E-value=4.9e-18 Score=107.78 Aligned_cols=75 Identities=25% Similarity=0.559 Sum_probs=71.3
Q ss_pred CCccccHHHHHHHHhccCCccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecCCCCC
Q 048030 1 VSFSTTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRR 75 (93)
Q Consensus 1 l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~~ 75 (93)
||+.+++++|..+|+.||.|..|.|+.++.+++.+|||||+|.+.++|.+||..||+..|.|+.|.|.++.+...
T Consensus 110 L~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a~~~~~ 184 (437)
T 3pgw_S 110 VNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERGRTV 184 (437)
T ss_pred CCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEeCCCCC
Confidence 789999999999999999999999999988999999999999999999999999999999999999999986544
No 129
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.77 E-value=6.8e-18 Score=98.23 Aligned_cols=74 Identities=27% Similarity=0.403 Sum_probs=70.2
Q ss_pred CCccccHHHHHHHHhccCCccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecCCCC
Q 048030 1 VSFSTTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSR 74 (93)
Q Consensus 1 l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~ 74 (93)
||+++++++|+++|+.||.|.++++++++.+++++|||||+|.+.++|.+|+..+++..+.|+.|++.++....
T Consensus 23 Lp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~~~~~ 96 (213)
T 4f02_A 23 LHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDP 96 (213)
T ss_dssp CCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCT
T ss_pred CCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCcccccccccccc
Confidence 78999999999999999999999999999999999999999999999999999999999999999999886543
No 130
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.77 E-value=3.8e-18 Score=95.91 Aligned_cols=70 Identities=19% Similarity=0.421 Sum_probs=67.6
Q ss_pred CCccccHHHHHHHHhccCCccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEec
Q 048030 1 VSFSTTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNV 70 (93)
Q Consensus 1 l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 70 (93)
||+++++++|+++|+.||.|..+.++.++.+|.++|+|||.|.+.++|.+|+..||+..+.|++|.|.++
T Consensus 102 lp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~A 171 (172)
T 2g4b_A 102 LPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 171 (172)
T ss_dssp CCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeC
Confidence 6889999999999999999999999999889999999999999999999999999999999999999986
No 131
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=5.3e-18 Score=87.26 Aligned_cols=71 Identities=20% Similarity=0.367 Sum_probs=62.1
Q ss_pred CCccccHHHHHHHHhccCC-ccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCC-CeeCCeEEEEEecCCCCCCCC
Q 048030 1 VSFSTTKEMLADAFSQFGQ-VTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNG-KLLDGRVIFVDNVRPSRRYNT 78 (93)
Q Consensus 1 l~~~~~~~~l~~~f~~~g~-i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~-~~~~g~~l~v~~~~~~~~~~~ 78 (93)
||+++++++|+++|+.||. +..+.+. .+|||||+|.+.++|.+|+..||+ ..+.|+.|.|.+++++..+..
T Consensus 16 Lp~~~t~~~l~~~F~~~G~vv~~~~~~-------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~~~~~~~ 88 (93)
T 2cqh_A 16 LSPAVTADDLRQLFGDRKLPLAGQVLL-------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDYSVSKKLRSS 88 (93)
T ss_dssp CCTTCCHHHHHHHHHHTTCCCSSCEEE-------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEECCCCCCCCC
T ss_pred CCCCCCHHHHHHHHHHcCCceEEEEEc-------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEEccCccccCC
Confidence 7899999999999999999 5555552 468999999999999999999999 999999999999987765443
No 132
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.76 E-value=1.9e-18 Score=89.39 Aligned_cols=71 Identities=25% Similarity=0.435 Sum_probs=63.9
Q ss_pred CCccccHHHHHHHHhccCCccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecCCCCCC
Q 048030 1 VSFSTTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRY 76 (93)
Q Consensus 1 l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~~~ 76 (93)
||+++++++|+++|+.||.|..+ ..++..+|||||+|.+.++|..|+..|++..+.|+.|.|.++.++...
T Consensus 24 L~~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 94 (96)
T 1fjc_A 24 LSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEKGGT 94 (96)
T ss_dssp CCSSCCHHHHHHHHCSEEEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEECSSSCCC
T ss_pred CCCCCCHHHHHHHHhhCCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcCCCCCC
Confidence 68899999999999999988766 237889999999999999999999999999999999999999876543
No 133
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.76 E-value=2e-18 Score=96.63 Aligned_cols=72 Identities=21% Similarity=0.463 Sum_probs=68.3
Q ss_pred CCccccHHHHHHHHhccCCccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecCCC
Q 048030 1 VSFSTTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPS 73 (93)
Q Consensus 1 l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~ 73 (93)
||+++++++|+++|+.||.|..+.++.++.++.++|||||+|.+.++|.+|+. +++..+.|++|.|.++.++
T Consensus 95 lp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~V~~a~pk 166 (167)
T 2cjk_A 95 IGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDRKIEIKRAEPR 166 (167)
T ss_dssp ECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSSSSCEEEEECCCC
T ss_pred CCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeCCeEEEEeecCCC
Confidence 68899999999999999999999999998899999999999999999999998 8999999999999998875
No 134
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=9.3e-18 Score=85.89 Aligned_cols=68 Identities=29% Similarity=0.486 Sum_probs=62.4
Q ss_pred CCccccHHHHHHHHhccCCccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecCCCCCC
Q 048030 1 VSFSTTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRY 76 (93)
Q Consensus 1 l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~~~ 76 (93)
||+++++++|+.+|+.||.|..+.+++ +||||+|.+.++|.+|+..|++..+.|+.|.|.++++....
T Consensus 17 lp~~~t~~~l~~~F~~~G~v~~~~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 84 (90)
T 2dnp_A 17 VSAACTSQELRSLFERRGRVIECDVVK--------DYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELSTKGQKK 84 (90)
T ss_dssp CCTTCCHHHHHHHHHHHSCEEEEEECS--------SCEEEEESCHHHHHHHHHHHTTCEETTEECEEEESCCCCCC
T ss_pred CCCCCCHHHHHHHHHcCCCEEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEECCCCCCC
Confidence 789999999999999999999999863 39999999999999999999999999999999999876543
No 135
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.76 E-value=2e-18 Score=89.40 Aligned_cols=72 Identities=21% Similarity=0.345 Sum_probs=65.7
Q ss_pred CCccccHHHHH----HHHhccCCccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecCCCCC
Q 048030 1 VSFSTTKEMLA----DAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRR 75 (93)
Q Consensus 1 l~~~~~~~~l~----~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~~ 75 (93)
||.++++++|+ .+|+.||.|..+.+.. ++..+|||||+|.+.++|..|+..|++..+.|+.|.|.++++...
T Consensus 16 Lp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~ 91 (97)
T 1nu4_A 16 LNEKIKKDELKKSLHAIFSRFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQYAKTDSD 91 (97)
T ss_dssp CCTTSCHHHHHHHHHHHHGGGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSSCCT
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEEEEEccCCCc
Confidence 68899999999 9999999999998863 567889999999999999999999999999999999999987653
No 136
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.76 E-value=1.4e-18 Score=90.81 Aligned_cols=73 Identities=23% Similarity=0.462 Sum_probs=67.0
Q ss_pred CCccccHHHHHHHHhccCCccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecCCCCCC
Q 048030 1 VSFSTTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRY 76 (93)
Q Consensus 1 l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~~~ 76 (93)
||+++++++|+++|+.||.|..+.++.++ ++..+|||||+|.+.++|.+|+. ++..+.|+.|.|.++.++...
T Consensus 17 Lp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a~~~~~~ 89 (102)
T 2xs2_A 17 IDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPAIRKQNL 89 (102)
T ss_dssp CCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEEEECC--
T ss_pred CCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEECCcCcch
Confidence 78999999999999999999999999998 99999999999999999999999 889999999999998766543
No 137
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.76 E-value=7.7e-19 Score=88.39 Aligned_cols=65 Identities=25% Similarity=0.444 Sum_probs=59.1
Q ss_pred CCccc------cHHHHHHHHhccCCccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeCCe-EEEE
Q 048030 1 VSFST------TKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGR-VIFV 67 (93)
Q Consensus 1 l~~~~------~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~-~l~v 67 (93)
||..+ ++++|+++|+.||.|.++.++ +.+|+++|||||+|.+.++|.+|+..|||..+.|+ +|.|
T Consensus 9 Lp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~--~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~V 80 (81)
T 2krb_A 9 VPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRV 80 (81)
T ss_dssp CCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC--CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCCC
T ss_pred CCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec--CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEEe
Confidence 67777 779999999999999999887 35889999999999999999999999999999998 8766
No 138
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.76 E-value=1.2e-17 Score=86.70 Aligned_cols=66 Identities=17% Similarity=0.429 Sum_probs=61.1
Q ss_pred CCc-cccHHHHHHHHhccCCccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecCCCC
Q 048030 1 VSF-STTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSR 74 (93)
Q Consensus 1 l~~-~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~ 74 (93)
||+ ++++++|+++|+.||.|..+.+. +|||||+|.+.++|.+|+..|++..+.|++|.|++++++.
T Consensus 30 Lp~~~~t~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~ 96 (97)
T 2xnq_A 30 LPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILEVSSSNA 96 (97)
T ss_dssp CCSSCCCHHHHHHHHGGGSCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHTTSEETTEECEEEECCCCC
T ss_pred CCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEecCCCC
Confidence 677 99999999999999999999882 6899999999999999999999999999999999987653
No 139
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.76 E-value=7.8e-18 Score=96.32 Aligned_cols=77 Identities=21% Similarity=0.443 Sum_probs=67.1
Q ss_pred CCccccHHHHHHHHhccCCccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecCCCCCCCC
Q 048030 1 VSFSTTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNT 78 (93)
Q Consensus 1 l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~~~~~ 78 (93)
||+++++++|+++|+.||.|..+.++.++.++..+|||||.|.+.++|.+|+.. ++..+.|+.|.|.++.++.....
T Consensus 112 Lp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~-~~~~~~G~~i~v~~a~~k~~~~~ 188 (196)
T 1l3k_A 112 IKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVNGHNCEVRKALSKQEMAS 188 (196)
T ss_dssp CTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC-SCCEETTEECEEEECC-------
T ss_pred CCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh-CCcEECCEEEEEEecCChhHhcc
Confidence 688999999999999999999999999988999999999999999999999986 79999999999999988766544
No 140
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.76 E-value=7.3e-18 Score=89.75 Aligned_cols=72 Identities=19% Similarity=0.379 Sum_probs=65.6
Q ss_pred CCccccHHHHHHHHhccCCccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecCCCCC
Q 048030 1 VSFSTTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRR 75 (93)
Q Consensus 1 l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~~ 75 (93)
||+++++++|+.+|+.||.|..+.++.+ +..+|||||+|.+.++|.+|+..|||..+.|+.|.|.++.+...
T Consensus 16 lp~~~t~~~l~~~F~~~G~v~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~ 87 (115)
T 3lqv_A 16 LPYKITAEEMYDIFGKYGPIRQIRVGNT---PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYYNANRA 87 (115)
T ss_dssp CCTTCCHHHHHHHHHTTSCEEEEEEECS---TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEECCHHHH
T ss_pred CCCCCCHHHHHHHHHhcCCeEEEEEeeC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecCChh
Confidence 6889999999999999999999999865 44589999999999999999999999999999999999986543
No 141
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=1.9e-17 Score=86.05 Aligned_cols=68 Identities=35% Similarity=0.619 Sum_probs=61.8
Q ss_pred CCccccHHHHHHHHhcc--CCccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecCCCCCC
Q 048030 1 VSFSTTKEMLADAFSQF--GQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRY 76 (93)
Q Consensus 1 l~~~~~~~~l~~~f~~~--g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~~~ 76 (93)
||+++++++|+.+|+.| |.|..+.+. ++||||+|.+.++|.+|+..|++..+.|+.|.|.+++++...
T Consensus 23 Lp~~~t~~~l~~~F~~~g~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 92 (99)
T 2cpd_A 23 LMLSTSEEMIEKEFNNIKPGAVERVKKI--------RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAKPVDKD 92 (99)
T ss_dssp CCTTCCHHHHHHHHHTTSTTCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEECCCCCCCC
T ss_pred CCCCCCHHHHHHHHHhcCCcceEEEEEe--------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEECCCCCCC
Confidence 78999999999999999 888888763 469999999999999999999999999999999999876643
No 142
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.76 E-value=6.2e-18 Score=98.40 Aligned_cols=72 Identities=39% Similarity=0.728 Sum_probs=67.0
Q ss_pred CCccccHHHHHHHHhccCCccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecCCCC
Q 048030 1 VSFSTTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSR 74 (93)
Q Consensus 1 l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~ 74 (93)
||+++++++|+++|+.||.|..++++.+. +..+|||||+|.+.++|.+|+..|||..++|++|.|.+++++.
T Consensus 111 l~~~~t~~~l~~~F~~~G~i~~~~i~~d~--~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a~~~~ 182 (213)
T 4f02_A 111 LDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRK 182 (213)
T ss_dssp CCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCHH
T ss_pred cccccHHHHHHHHHhhcCCeEEEEeeccC--CCCceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcCCCc
Confidence 68899999999999999999999999885 4578999999999999999999999999999999999998653
No 143
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.76 E-value=8.1e-18 Score=86.77 Aligned_cols=69 Identities=20% Similarity=0.288 Sum_probs=61.2
Q ss_pred CCccccHHHHHHHHhccCCccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecCCCCC
Q 048030 1 VSFSTTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRR 75 (93)
Q Consensus 1 l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~~ 75 (93)
||+++++++|+.+|+.||.|.++ +.++.++. ||||+|.+.++|.+|+. |++..+.|+.|.|.++.++..
T Consensus 16 l~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a~~~~~ 84 (94)
T 2e5g_A 16 FPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPREQKEF 84 (94)
T ss_dssp CCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEETTEECCCBCSCCSCC
T ss_pred CCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEECCcCCC
Confidence 78999999999999999999987 55655555 99999999999999999 999999999999998765543
No 144
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.76 E-value=6.3e-19 Score=92.98 Aligned_cols=71 Identities=18% Similarity=0.317 Sum_probs=66.4
Q ss_pred CCccccHHHHHHHHhccCC---ccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecCCC
Q 048030 1 VSFSTTKEMLADAFSQFGQ---VTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPS 73 (93)
Q Consensus 1 l~~~~~~~~l~~~f~~~g~---i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~ 73 (93)
||+++++++|+++|+.||. |..+.++.++. |+.+|||||+|.+.++|.+|+. +++..++|+.|.|.++.+.
T Consensus 19 Lp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~~a~~~ 92 (107)
T 2lmi_A 19 LPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALE-KHRMYMGQRYVEVYEINNE 92 (107)
T ss_dssp CCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCCCCEECCHH
T ss_pred CCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEEEEEECCHH
Confidence 7899999999999999998 89999999986 9999999999999999999999 9999999999999988654
No 145
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=9e-18 Score=85.01 Aligned_cols=65 Identities=25% Similarity=0.405 Sum_probs=60.4
Q ss_pred CCccccHHHHHHHHhccCCccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHh-CCCeeCCeEEEEEecC
Q 048030 1 VSFSTTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADM-NGKLLDGRVIFVDNVR 71 (93)
Q Consensus 1 l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l-~~~~~~g~~l~v~~~~ 71 (93)
||.++++++|+++|+.||.|..+.++.+ +|||||+|.+.++|..|+..| ++..+.|++|.|++++
T Consensus 20 l~~~~t~~~l~~~f~~~G~i~~~~~~~~------kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~ak 85 (85)
T 2ytc_A 20 LGDTITETDLRNHFYQFGEIRTITVVQR------QQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKWGR 85 (85)
T ss_dssp CTTTSCHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEECC
T ss_pred CCCCCCHHHHHHHHHhCCCEeEEEEECC------CCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEecC
Confidence 6889999999999999999999998763 589999999999999999999 9999999999999875
No 146
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.75 E-value=3.5e-18 Score=94.80 Aligned_cols=69 Identities=20% Similarity=0.407 Sum_probs=64.3
Q ss_pred CCccccHHHHHHHHhccCCccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecCCCC
Q 048030 1 VSFSTTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSR 74 (93)
Q Consensus 1 l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~ 74 (93)
||+++++++|+++|+.||.|.++.++.+ ++|||||+|.+.++|..|+..||+..+.|++|.|.++++++
T Consensus 81 l~~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 149 (150)
T 2i2y_A 81 LGNNGNKTELERAFGYYGPLRSVWVARN-----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNGEK 149 (150)
T ss_dssp CCSCCSCHHHHHHHHHHSCEEEEEECSS-----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECCCCC
T ss_pred CCCCCCHHHHHHHHHhhCCEEEEEEeeC-----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcCCCC
Confidence 7899999999999999999999999765 47899999999999999999999999999999999988764
No 147
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.75 E-value=1.1e-17 Score=88.49 Aligned_cols=67 Identities=25% Similarity=0.535 Sum_probs=61.7
Q ss_pred CCcc-ccHHHHHHHHhccCCccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecCCCCC
Q 048030 1 VSFS-TTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRR 75 (93)
Q Consensus 1 l~~~-~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~~ 75 (93)
||++ +++++|+++|+.||.|..+.+ .++||||+|.+.++|..|+..|++..+.|+.|.|.+++....
T Consensus 35 l~~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~~ 102 (110)
T 1wf1_A 35 LNTALVKKSDVETIFSKYGRVAGCSV--------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMAGEPKP 102 (110)
T ss_dssp CCCSSCCHHHHHHHHGGGSCCSEEEE--------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEESCCCCS
T ss_pred CCcccCCHHHHHHHHHhCCCeEEEEE--------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCCCCC
Confidence 6888 999999999999999999988 468999999999999999999999999999999999975443
No 148
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.75 E-value=6.8e-18 Score=87.38 Aligned_cols=70 Identities=17% Similarity=0.387 Sum_probs=62.2
Q ss_pred CCc-cccHHHHHHHHhccCCccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecCCCCCCCC
Q 048030 1 VSF-STTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYNT 78 (93)
Q Consensus 1 l~~-~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~~~~~ 78 (93)
||+ .+++++|+.+|+.||.|..+.+. +|||||+|.+.++|..|+..|++..+.|++|.|.++++......
T Consensus 18 lp~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~~~~~ 88 (96)
T 2kvi_A 18 LPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEVSSSNARPQF 88 (96)
T ss_dssp STTSCCCHHHHHHHHTTTCCCCEEEEE--------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEEEECCCC---
T ss_pred CCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEcCcCCCCCC
Confidence 687 99999999999999999999883 57999999999999999999999999999999999987655443
No 149
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.75 E-value=2.3e-17 Score=89.49 Aligned_cols=69 Identities=17% Similarity=0.338 Sum_probs=62.3
Q ss_pred CCccccHHHHHHHHhccCCccEEEEeecCCCCCcccE-EEEEecCHHHHHHHHHHhCCCeeCC--eEEEEEecCCCC
Q 048030 1 VSFSTTKEMLADAFSQFGQVTEATIIMDKGKNRSKGY-GYVTFSTEEEAQKALADMNGKLLDG--RVIFVDNVRPSR 74 (93)
Q Consensus 1 l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~-~fv~f~~~~~a~~a~~~l~~~~~~g--~~l~v~~~~~~~ 74 (93)
|++.+++++|+++|+.||.|.++.+..+ .+|+ |||+|.+.++|..|+..|||..+.| +.|+|++++...
T Consensus 36 L~~~vte~~L~~lFs~yG~V~~V~i~~~-----~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ak~~~ 107 (130)
T 3zzy_A 36 LFYPVTLDVLHQIFSKFGTVLKIITFTK-----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLTS 107 (130)
T ss_dssp CCSCCCHHHHHHHHTTSSCEEEEEEEEE-----TTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEECSCSS
T ss_pred CCCCCCHHHHHHHHhCcCCEEEEEEEcC-----CCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEecCCCc
Confidence 6789999999999999999999988654 2577 9999999999999999999999988 899999998763
No 150
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.75 E-value=1.5e-18 Score=95.58 Aligned_cols=76 Identities=24% Similarity=0.376 Sum_probs=64.1
Q ss_pred CCccccHHHHHHHHhccCCccEE------EEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecCCCC
Q 048030 1 VSFSTTKEMLADAFSQFGQVTEA------TIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSR 74 (93)
Q Consensus 1 l~~~~~~~~l~~~f~~~g~i~~~------~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~ 74 (93)
||+++++++|+.+|+.||.|..+ .+.. ..++..+|||||.|.+.++|.+|+..||+..+.|+.|.|.++++..
T Consensus 53 Lp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~-~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~~~~ 131 (143)
T 3egn_A 53 LAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRL-MKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPMVVQFARSAR 131 (143)
T ss_dssp ECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEE-EEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEECEEEECCCSC
T ss_pred CCCCCCHHHHHHHHHHhCCcccccccceeeEEe-ccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEECCCCC
Confidence 68899999999999999998763 1111 2368899999999999999999999999999999999999998765
Q ss_pred CCC
Q 048030 75 RYN 77 (93)
Q Consensus 75 ~~~ 77 (93)
...
T Consensus 132 ~~~ 134 (143)
T 3egn_A 132 PKQ 134 (143)
T ss_dssp C--
T ss_pred Ccc
Confidence 443
No 151
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.75 E-value=9e-19 Score=96.24 Aligned_cols=72 Identities=21% Similarity=0.238 Sum_probs=66.3
Q ss_pred CCccccHHHHHHHHhccCCccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecCCCCC
Q 048030 1 VSFSTTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRR 75 (93)
Q Consensus 1 l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~~ 75 (93)
||+++++++|+++|+.|| +..+.++.++. ++++|||||+|.+.++|.+|+ .+++..+.|+.|.|..+.....
T Consensus 54 Lp~~~te~dL~~~F~~~G-i~~v~i~~d~~-g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~a~~~~~ 125 (139)
T 2hgn_A 54 LPYKATENDIYNFFSPLN-PVRVHIEIGPD-GRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFLNSTTGA 125 (139)
T ss_dssp CCTTCCHHHHHHHHCSCC-CSEEECCCSSS-SCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEECCCSCC
T ss_pred CCCCCCHHHHHHHHHhcC-CeEEEEEECCC-CCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEECCCCCC
Confidence 799999999999999999 77999999985 999999999999999999999 6899999999999998876654
No 152
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.75 E-value=1.3e-17 Score=93.45 Aligned_cols=70 Identities=17% Similarity=0.288 Sum_probs=63.0
Q ss_pred CCccccHHHHHHHHhccCCccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeCC--eEEEEEecCCCC
Q 048030 1 VSFSTTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDG--RVIFVDNVRPSR 74 (93)
Q Consensus 1 l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g--~~l~v~~~~~~~ 74 (93)
|++.+++++|+++|+.||.|.++.+..+. .++||||+|.+.++|..|+..|||..|.| +.|+|.+++++.
T Consensus 54 L~~~vted~L~~~Fs~fG~V~~V~i~~k~----~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~Ak~~~ 125 (164)
T 1sjr_A 54 LFYPVTLDVLHQIFSKFGTVLKIITFTKN----NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLTS 125 (164)
T ss_dssp CCSCCCHHHHHHHHHHHSCEEEEEEEESS----SCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEECSSSS
T ss_pred cCCCCCHHHHHHHHHhcCCEEEEEEEeCC----CCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEecCCc
Confidence 68899999999999999999999886542 46899999999999999999999999965 999999998763
No 153
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.74 E-value=3.5e-18 Score=89.78 Aligned_cols=61 Identities=26% Similarity=0.467 Sum_probs=54.7
Q ss_pred HHHHHH-hccCCccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEec
Q 048030 9 MLADAF-SQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNV 70 (93)
Q Consensus 9 ~l~~~f-~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 70 (93)
+|+..| ++||.|.++.++.++ ++.++|||||.|.+.++|.+|+..|||..+.|+.|.|.++
T Consensus 42 dl~~~f~~~~G~V~~v~i~~~~-~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i~v~~s 103 (104)
T 1jmt_A 42 EVFTEMEEKYGEVEEMNVCDNL-GDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIHAELS 103 (104)
T ss_dssp HHHHHHHHHTCCEEEEEECCSS-SSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEECCEEEC
T ss_pred HHHHHhhccCCceEEEEEEeCC-CCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEEEEEEc
Confidence 444455 999999999999876 4788999999999999999999999999999999999875
No 154
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=1.6e-17 Score=88.11 Aligned_cols=68 Identities=16% Similarity=0.186 Sum_probs=62.3
Q ss_pred CCccccHHHHHHHHhccCCccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecCCCC
Q 048030 1 VSFSTTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSR 74 (93)
Q Consensus 1 l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~ 74 (93)
||+++++++|+.+|+.||.|..+.++. .++||||+|.+.++|..|+..||+..+.|+.|.|.++....
T Consensus 18 Lp~~~te~~L~~~F~~~G~i~~v~i~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~ 85 (111)
T 1whx_A 18 LPAGTLAAEIQETFSRFGSLGRVLLPE------GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPIGV 85 (111)
T ss_dssp CCTTCCHHHHHHHHHTTSCEEEEECCS------SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEETTT
T ss_pred CCCCCCHHHHHHHHHhcCCEEEEEEeC------CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECCCCc
Confidence 789999999999999999999998753 45799999999999999999999999999999999997643
No 155
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.74 E-value=3.7e-17 Score=85.98 Aligned_cols=67 Identities=22% Similarity=0.318 Sum_probs=61.8
Q ss_pred cHHHHHHHHhccCCccEEEEeecCCC-CCcccEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecCC
Q 048030 6 TKEMLADAFSQFGQVTEATIIMDKGK-NRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRP 72 (93)
Q Consensus 6 ~~~~l~~~f~~~g~i~~~~~~~~~~~-~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~ 72 (93)
.+++|++.|++||.|.++.++.++.+ +..+|++||.|.+.++|.+|+..|||..+.|+.|.|.++..
T Consensus 26 ~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~i~v~~a~~ 93 (105)
T 2pe8_A 26 LEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRVVKACFYNL 93 (105)
T ss_dssp CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCH
T ss_pred HHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcEEEEEEcCH
Confidence 67899999999999999999987643 67899999999999999999999999999999999999864
No 156
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.74 E-value=3.7e-17 Score=91.17 Aligned_cols=74 Identities=23% Similarity=0.473 Sum_probs=67.9
Q ss_pred CCccccHHHHHHHHhccCCccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecCCCCC
Q 048030 1 VSFSTTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRR 75 (93)
Q Consensus 1 l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~~ 75 (93)
||.++++++|+++|+.||.|.++.++.++ .++.+|||||+|.+.++|.+|+..|++..+.|+.|.|.++.....
T Consensus 8 lp~~~t~~~l~~~f~~~G~i~~v~i~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~~~ 81 (166)
T 3md3_A 8 LDKAITEDILKQYFQVGGPIANIKIMIDK-NNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQSQQ 81 (166)
T ss_dssp EETTCCHHHHHHHHGGGSCEEEEEEECCC-C-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCCC
T ss_pred CCCcCCHHHHHHHHHhcCCeEEEEEEECC-CCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCCCC
Confidence 68899999999999999999999999887 578999999999999999999999999999999999999876643
No 157
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=3.8e-17 Score=84.67 Aligned_cols=68 Identities=25% Similarity=0.453 Sum_probs=61.4
Q ss_pred cccHHHHHHHHhccCCccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecCCCCCCC
Q 048030 4 STTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYN 77 (93)
Q Consensus 4 ~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~~~~ 77 (93)
++++++|+.+|+.||.|..+.+. ..+|||||+|.+.++|.+|+..|++..+.|+.|.|.+++++....
T Consensus 24 ~~t~~~l~~~F~~~G~i~~v~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~~~~~~~ 91 (97)
T 1x5p_A 24 DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQPMLD 91 (97)
T ss_dssp SCCHHHHHHHHTTTSCEEEEEEE------TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECCSSCCCCC
T ss_pred CCCHHHHHHHHhhCCCEEEEEec------CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECCCCCCCC
Confidence 68999999999999999999884 456899999999999999999999999999999999998765544
No 158
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.73 E-value=2.9e-17 Score=91.89 Aligned_cols=70 Identities=26% Similarity=0.503 Sum_probs=66.4
Q ss_pred CCccccHHHHHHHHhccCCccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeCC--eEEEEEec
Q 048030 1 VSFSTTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDG--RVIFVDNV 70 (93)
Q Consensus 1 l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g--~~l~v~~~ 70 (93)
||..+++++|+++|+.||.|..+.++.++.++..+|+|||+|.+.++|.+|+..|++..+.| ++|.|.++
T Consensus 97 l~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~V~~A 168 (168)
T 1b7f_A 97 LPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSVRLA 168 (168)
T ss_dssp CCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred CCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCeEEEEEeC
Confidence 68899999999999999999999999998899999999999999999999999999999987 99999875
No 159
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.73 E-value=2.1e-17 Score=95.74 Aligned_cols=74 Identities=27% Similarity=0.463 Sum_probs=66.9
Q ss_pred CCccccHHHHHHHHhccCCccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecCCCC
Q 048030 1 VSFSTTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSR 74 (93)
Q Consensus 1 l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~ 74 (93)
||+++++++|+++|+.||.|.++.++.++.++..+|||||+|.+.++|.+|+..|++..+.|+.|.|.++....
T Consensus 36 Lp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~~~~ 109 (216)
T 2qfj_A 36 IYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSNIG 109 (216)
T ss_dssp CCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCSCCG
T ss_pred CCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCCCcc
Confidence 78999999999999999999999999998899999999999999999999999999999999999998876553
No 160
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=1.7e-17 Score=88.18 Aligned_cols=69 Identities=19% Similarity=0.358 Sum_probs=60.8
Q ss_pred CCccccHHHHHHHHhccCCccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCee-----CCeEEEEEecCCCCC
Q 048030 1 VSFSTTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLL-----DGRVIFVDNVRPSRR 75 (93)
Q Consensus 1 l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~-----~g~~l~v~~~~~~~~ 75 (93)
|++++++++|+++|+.||.|..+.++. .+|||||+|.+.++|.+|+..|||..+ .|++|.|.+++..+.
T Consensus 35 L~~~~te~~L~~~F~~fG~v~~v~i~~------~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~l~v~~a~~~p~ 108 (114)
T 2cq2_A 35 LGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYLNFVEKVQW 108 (114)
T ss_dssp GGGTCCHHHHHHHHHHHSCEEEEECCT------TCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECEEEEESCCCC
T ss_pred CCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcEEEEEecccCcc
Confidence 578899999999999999999887753 268999999999999999999999987 688999999875543
No 161
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=9.6e-18 Score=90.44 Aligned_cols=71 Identities=27% Similarity=0.346 Sum_probs=64.3
Q ss_pred CCccccHHHHHHHHhccCCc----cEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecCCC
Q 048030 1 VSFSTTKEMLADAFSQFGQV----TEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPS 73 (93)
Q Consensus 1 l~~~~~~~~l~~~f~~~g~i----~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~ 73 (93)
||+++++++|+++|+.||.| ..+.++.++ +|+++|||||+|.+.++|.+|+.. ++..++|+.|.|..+..+
T Consensus 31 Lp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~-~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~V~~a~~~ 105 (123)
T 2dha_A 31 LPFTATAEEVVAFFGQHCPITGGKEGILFVTYP-DGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIELFRSTAA 105 (123)
T ss_dssp CCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECT-TSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEECCEEECHH
T ss_pred CCCCCCHHHHHHHHHhhCCccCCcceEEEEECC-CCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEEEECCHH
Confidence 79999999999999999875 689999885 899999999999999999999995 899999999999887543
No 162
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.73 E-value=2.6e-17 Score=85.07 Aligned_cols=69 Identities=23% Similarity=0.316 Sum_probs=62.5
Q ss_pred CCccccHHHHHHHHhccCCccEE-EEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecCCC
Q 048030 1 VSFSTTKEMLADAFSQFGQVTEA-TIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPS 73 (93)
Q Consensus 1 l~~~~~~~~l~~~f~~~g~i~~~-~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~ 73 (93)
||+++++++|+.+|+.||.|..+ .++.++.++. |||+|.+.++|..|+..|++..+.|+.|.|.++.++
T Consensus 23 lp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~~----afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~ 92 (96)
T 2e44_A 23 IPPHLQWEVLDSLLVQYGVVESCEQVNTDSETAV----VNVTYSSKDQARQALDKLNGFQLENFTLKVAYIPDE 92 (96)
T ss_dssp ECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSEE----EEEEESSHHHHHHHHHHHTTCBCSSCBCEEEECCCC
T ss_pred CCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCE----EEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCcc
Confidence 68899999999999999999999 4777764433 999999999999999999999999999999998876
No 163
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.73 E-value=5.9e-17 Score=92.66 Aligned_cols=74 Identities=34% Similarity=0.595 Sum_probs=67.6
Q ss_pred CCccccHHHHHHHHhccCCccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecCCCCC
Q 048030 1 VSFSTTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRR 75 (93)
Q Consensus 1 l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~~ 75 (93)
||+++++++|+++|+.||.|.++.++.++.++.++|||||+|.+.++|.+|+.. ++..+.|+.|.|.++.....
T Consensus 21 Lp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l~v~~~~~~~~ 94 (196)
T 1l3k_A 21 LSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEPKRAVSRED 94 (196)
T ss_dssp CCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEECEEEECCC---
T ss_pred CCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEeeeecccCccc
Confidence 789999999999999999999999999988999999999999999999999985 88999999999999876543
No 164
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.72 E-value=5.2e-17 Score=90.66 Aligned_cols=70 Identities=29% Similarity=0.517 Sum_probs=65.4
Q ss_pred CCccccHHHHHHHHhccCCccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeCCeE--EEEEec
Q 048030 1 VSFSTTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRV--IFVDNV 70 (93)
Q Consensus 1 l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~--l~v~~~ 70 (93)
||..+++++|+++|+.||.|..+.++.++.+|.++|+|||+|.+.++|.+|+..|||..+.|+. |.|.||
T Consensus 96 l~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~i~v~~A 167 (167)
T 1fxl_A 96 LPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFA 167 (167)
T ss_dssp CCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred CCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCCccceEEEeC
Confidence 6889999999999999999999999999889999999999999999999999999999999964 888775
No 165
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.72 E-value=3.4e-17 Score=87.32 Aligned_cols=68 Identities=24% Similarity=0.282 Sum_probs=59.3
Q ss_pred CCccccHHHHHHHHhccCCccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeCCeE-----EEEEecCCCCC
Q 048030 1 VSFSTTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRV-----IFVDNVRPSRR 75 (93)
Q Consensus 1 l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~-----l~v~~~~~~~~ 75 (93)
||+++++++|+++|+.||.|..+.++.+ |||||+|.+.++|.+|+..||+..+.|+. |.|..+.+...
T Consensus 24 Lp~~~t~~~l~~~F~~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~v~~~~~~~~ 96 (115)
T 3beg_B 24 LPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVDGPRSP 96 (115)
T ss_dssp CCSSCCTTHHHHHHGGGSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCEEEECC----
T ss_pred CCCCCCHHHHHHHHHhcCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEEeccCCCCCC
Confidence 7899999999999999999999998664 79999999999999999999999999988 77877765443
No 166
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=1.4e-17 Score=88.43 Aligned_cols=71 Identities=14% Similarity=0.252 Sum_probs=62.0
Q ss_pred CCcc-ccHHHHHHHHhccCCccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCC--CeeCCeEEEEEecCCCCCCC
Q 048030 1 VSFS-TTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNG--KLLDGRVIFVDNVRPSRRYN 77 (93)
Q Consensus 1 l~~~-~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~--~~~~g~~l~v~~~~~~~~~~ 77 (93)
||++ +++++|+++|+.||.|.++.+++ .+|||||+|.+.++|..|+..|++ ..+.|++|.|.+++.+....
T Consensus 33 Lp~~~~te~~L~~lF~~fG~V~~v~i~~------~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~a~~~~~~~ 106 (112)
T 1x4f_A 33 LPHSGYSDSAVLKLAEPYGKIKNYILMR------MKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVDLSEKYKKLV 106 (112)
T ss_dssp CCCSSCCSHHHHTTTTTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEEEEECSCSSSS
T ss_pred CCCccCCHHHHHHHHHhcCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEECccccccc
Confidence 7887 99999999999999999999864 358999999999999999998865 45899999999998665443
No 167
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.72 E-value=8.7e-17 Score=86.72 Aligned_cols=68 Identities=26% Similarity=0.364 Sum_probs=61.1
Q ss_pred CCccccHHHHHHHHhccCCccEEEEeecCCCCCcccE-EEEEecCHHHHHHHHHHhCCCeeCC--eEEEEEecCCCC
Q 048030 1 VSFSTTKEMLADAFSQFGQVTEATIIMDKGKNRSKGY-GYVTFSTEEEAQKALADMNGKLLDG--RVIFVDNVRPSR 74 (93)
Q Consensus 1 l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~-~fv~f~~~~~a~~a~~~l~~~~~~g--~~l~v~~~~~~~ 74 (93)
|++.+++++|+++|+.||.|.++.+... .|| |||+|.+.++|..|+..|||..|.| +.|+|.+++++.
T Consensus 33 L~~~vt~~~L~~~Fs~yG~V~~v~i~~~------~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak~~~ 103 (124)
T 2e5i_A 33 PLYPITVDVLYTVCNPVGKVQRIVIFKR------NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYARPTR 103 (124)
T ss_dssp CCSCCCHHHHHHHHTTTSCEEEEEEEES------SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECCSCSC
T ss_pred cCCCCCHHHHHHHHHhcCCEEEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEecCCc
Confidence 6889999999999999999999988642 276 9999999999999999999999987 689999998764
No 168
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.72 E-value=5.2e-17 Score=82.81 Aligned_cols=67 Identities=16% Similarity=0.242 Sum_probs=61.7
Q ss_pred CCccccHHHHHHHHhccCCccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecCCCC
Q 048030 1 VSFSTTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSR 74 (93)
Q Consensus 1 l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~ 74 (93)
||+++++++|+++|+.| .|.++.+. +.+|||||+|.+.++|.+|+..|++..+.|++|.|+++....
T Consensus 13 Lp~~~t~~~l~~~F~~~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~~ 79 (88)
T 1wg1_A 13 LPQDSNCQEVHDLLKDY-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPTDA 79 (88)
T ss_dssp CCSSCCHHHHHHHTCSS-CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECCCCC
T ss_pred CCCCCCHHHHHHHHhhC-CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcCCCc
Confidence 78999999999999999 99999884 578999999999999999999999999999999999986554
No 169
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.71 E-value=7.7e-17 Score=90.62 Aligned_cols=70 Identities=29% Similarity=0.378 Sum_probs=64.6
Q ss_pred CCccccHHHHHHHHhccCCccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeC---CeEEEEEecC
Q 048030 1 VSFSTTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLD---GRVIFVDNVR 71 (93)
Q Consensus 1 l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~---g~~l~v~~~~ 71 (93)
||+++++++|+++|+.||.|..+.++.++ +|.++|||||+|.+.++|.+|+..|||..+. +++|.|.++.
T Consensus 103 l~~~~t~~~l~~~F~~~G~i~~v~~~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V~~ad 175 (175)
T 3nmr_A 103 ISKKCTENDIRVMFSSFGQIEECRILRGP-DGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKFAD 175 (175)
T ss_dssp CCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCEEEECC
T ss_pred CCCcCCHHHHHHHHHhCCCEEEEEEEECC-CCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeEEEecC
Confidence 68899999999999999999999999886 6889999999999999999999999998876 4999999874
No 170
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.70 E-value=1.6e-17 Score=89.82 Aligned_cols=69 Identities=28% Similarity=0.391 Sum_probs=62.6
Q ss_pred CCccccHHHHHHHHhccCCcc--EEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecCC
Q 048030 1 VSFSTTKEMLADAFSQFGQVT--EATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRP 72 (93)
Q Consensus 1 l~~~~~~~~l~~~f~~~g~i~--~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~ 72 (93)
||+++++++|+++|+.| .|. .+.++.++. |+++|||||+|.+.++|.+|+. +++..++|+.|.|..+..
T Consensus 50 Lp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~-~~~~~l~gR~I~V~~a~~ 120 (126)
T 2hgm_A 50 LPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALG-KHKERIGHRYIEVFKSSQ 120 (126)
T ss_dssp CCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHT-TTTCCBTTBCCCCEEECH
T ss_pred CCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHH-HCCCEECCEEEEEEECCH
Confidence 79999999999999999 566 899999986 9999999999999999999999 477889999999988753
No 171
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.70 E-value=1.2e-16 Score=92.71 Aligned_cols=69 Identities=13% Similarity=0.265 Sum_probs=63.1
Q ss_pred CC-ccccHHHHHHHHhccCCccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecCCCC
Q 048030 1 VS-FSTTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSR 74 (93)
Q Consensus 1 l~-~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~ 74 (93)
|| +.+++++|+.+|+.||.|.+++++.+ .+|||||+|.+.++|..|+..|||..+.|+.|.|.+++...
T Consensus 12 L~~~~~~~~~L~~~F~~~G~v~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s~~~~ 81 (205)
T 3tyt_A 12 LDQSKMNCDRVFNVFCLYGNVEKVKFMKS-----KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVSKQPA 81 (205)
T ss_dssp CCTTTCCHHHHHHHHTTTSCEEEEEECTT-----STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSCSC
T ss_pred CCcccCCHHHHHHHHHhcCCeEEEEEecC-----CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEccCCc
Confidence 67 79999999999999999999999764 36899999999999999999999999999999999987543
No 172
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.69 E-value=1.6e-16 Score=83.56 Aligned_cols=67 Identities=24% Similarity=0.339 Sum_probs=60.3
Q ss_pred cHHHHHHHHhccCCccEEEEeecCCC--CCcccEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecCC
Q 048030 6 TKEMLADAFSQFGQVTEATIIMDKGK--NRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRP 72 (93)
Q Consensus 6 ~~~~l~~~f~~~g~i~~~~~~~~~~~--~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~ 72 (93)
.+++|++.|++||.|.++.+++++.+ +..+|++||.|.+.++|.+|+..|||..+.||.|.|.++..
T Consensus 28 ~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~f~GR~i~v~~~~~ 96 (105)
T 3v4m_A 28 IVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRKFANRVVVTKYCDP 96 (105)
T ss_dssp HHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEECH
T ss_pred HHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEeCH
Confidence 45799999999999999999887654 35789999999999999999999999999999999998753
No 173
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.69 E-value=9.2e-17 Score=96.95 Aligned_cols=73 Identities=23% Similarity=0.401 Sum_probs=66.4
Q ss_pred CCcc-ccHHHHHHHHhccCCccEEEEeecCC-CCCcccEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecCCCC
Q 048030 1 VSFS-TTKEMLADAFSQFGQVTEATIIMDKG-KNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSR 74 (93)
Q Consensus 1 l~~~-~~~~~l~~~f~~~g~i~~~~~~~~~~-~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~ 74 (93)
||++ +++++|+++|+.||.|..+.++.+.. ++..+|||||.|.+.++|.+|+ .||+..+.|+.|.|.++.+++
T Consensus 218 lp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l~g~~~~g~~i~V~~a~~k~ 292 (292)
T 2ghp_A 218 LSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-QMNRSLLGNREISVSLADKKP 292 (292)
T ss_dssp ECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-GGTTEEETTEEEEEEECCCCC
T ss_pred CCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-HhcCCEECCcEEEEEEecCCC
Confidence 5788 99999999999999999999988875 4899999999999999999999 999999999999999998763
No 174
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.69 E-value=2.6e-16 Score=82.04 Aligned_cols=66 Identities=18% Similarity=0.280 Sum_probs=57.6
Q ss_pred ccccHHHHHHHHhccCCccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecCCCCC
Q 048030 3 FSTTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRR 75 (93)
Q Consensus 3 ~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~~ 75 (93)
..+++++|+++|+.||.|.++.++ +..+|||||+|.+.++|..|+..+++ +.|++|.|.+++.+..
T Consensus 27 ~~~te~~L~~~F~~~G~V~~v~i~-----~~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l~V~~a~~~~~ 92 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKYGEVLNLVLS-----SKKPGTAVVEFATVKAAELAVQNEVG--LVDNPLKISWLEGQPQ 92 (100)
T ss_dssp CSCCHHHHHHHHHTTSCEEEEEEE-----SSSSSEEEEEESCHHHHHHHHHTCCB--CSSSBCEEECSSCCCC
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEc-----cCCCCEEEEEECCHHHHHHHHHhcCC--CCCCeEEEEEccCCCC
Confidence 468999999999999999999886 35789999999999999999997544 6799999999887654
No 175
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.69 E-value=1.7e-16 Score=85.37 Aligned_cols=67 Identities=25% Similarity=0.449 Sum_probs=60.6
Q ss_pred cccHHHHHHHHhccCCccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecCCCCCC
Q 048030 4 STTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRY 76 (93)
Q Consensus 4 ~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~~~ 76 (93)
++++++|+++|+.||.|.++.+. ..+|||||+|.+.++|.+|+..|++..+.|+.|.|.+++++...
T Consensus 48 ~~te~~L~~~F~~~G~I~~v~i~------~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~~~~~~ 114 (121)
T 2bz2_A 48 DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQPML 114 (121)
T ss_dssp SCCHHHHHHHHSTTCCCSCEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEECCSSCC-
T ss_pred CCCHHHHHHHHHccCCEEEEEEe------CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEeCCCCCC
Confidence 58999999999999999999885 45689999999999999999999999999999999999876543
No 176
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.69 E-value=5.1e-16 Score=93.37 Aligned_cols=75 Identities=23% Similarity=0.457 Sum_probs=70.9
Q ss_pred CCccccHHHHHHHHhccCCccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecCCCCC
Q 048030 1 VSFSTTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRR 75 (93)
Q Consensus 1 l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~~ 75 (93)
||+++++++|+++|+.||.|..+.++.++.+|.++|||||+|.+.++|.+|+..|++..+.|+.|.|.++.+...
T Consensus 103 lp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a~~~~~ 177 (284)
T 3smz_A 103 LPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWTDAGQL 177 (284)
T ss_dssp CCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCGGGC
T ss_pred CCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECCCCCC
Confidence 789999999999999999999999999988999999999999999999999999999999999999999976653
No 177
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.69 E-value=1.5e-16 Score=89.65 Aligned_cols=68 Identities=26% Similarity=0.473 Sum_probs=62.4
Q ss_pred CCccccHHHHHHHHhccCCccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecCCC
Q 048030 1 VSFSTTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPS 73 (93)
Q Consensus 1 l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~ 73 (93)
||+++++++|+++|+.||.|..+ ..++..+|||||+|.+.++|.+|+..|++..+.|+.|.|.+++++
T Consensus 107 lp~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~k 174 (175)
T 1fje_B 107 LSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEK 174 (175)
T ss_dssp CCSSCCHHHHHHHCTTCSEEEEE-----CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEECSSC
T ss_pred CCCCCCHHHHHHHHHhcCeEEEe-----cCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEecCCC
Confidence 68899999999999999977655 457889999999999999999999999999999999999999765
No 178
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.69 E-value=3.4e-16 Score=90.10 Aligned_cols=71 Identities=17% Similarity=0.150 Sum_probs=64.6
Q ss_pred CCccccHHHHHHHHhccCCccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecCCC
Q 048030 1 VSFSTTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPS 73 (93)
Q Consensus 1 l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~ 73 (93)
||+++++++|+++|+.||.|..+.++++. ++..+|||||+|.+.++|..|+..+ +..+.|+.|.|.+++..
T Consensus 117 Lp~~~t~~~L~~~F~~~G~v~~v~i~~~~-~~~~kG~aFVeF~~~e~A~~A~~~~-~~~~~Gr~l~V~~~~~y 187 (193)
T 2voo_A 117 FPTDATLDDIKEWLEDKGQVLNIQMRRTL-HKAFKGSIFVVFDSIESAKKFVETP-GQKYKETDLLILFKDDY 187 (193)
T ss_dssp CCTTCCHHHHHHHHTTSCCEEEEEEEECT-TCCEEEEEEEEESSHHHHHHHHHCT-TCEETTEECEEEETTTC
T ss_pred CCCcCCHHHHHHHHhcCCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHhC-CCeECCEEEEEEEhHHH
Confidence 78999999999999999999999999886 5889999999999999999999865 45899999999987654
No 179
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.68 E-value=3.2e-16 Score=94.25 Aligned_cols=74 Identities=20% Similarity=0.260 Sum_probs=69.2
Q ss_pred CCccc-cHHHHHHHHhccCCccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecCCCCC
Q 048030 1 VSFST-TKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRR 75 (93)
Q Consensus 1 l~~~~-~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~~ 75 (93)
||+++ ++++|+++|+.||.|..+.++.++ +|..+|+|||.|.+.++|.+|+..|+|..+.|+.|.|.++.++..
T Consensus 192 lp~~~~~~~~l~~~f~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~ 266 (284)
T 3smz_A 192 LPPGFNDVDALCRALSAVHSPTFCQLACGQ-DGQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLRVSFCAPGPP 266 (284)
T ss_dssp CCTTCCCHHHHHHHTCSSSCCSEEEEEECS-SCCEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCSSSC
T ss_pred CCcccCCHHHHHHHhhCCCCeEEEEEEECC-CCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEEEEEecCCCc
Confidence 67885 999999999999999999999887 799999999999999999999999999999999999999987765
No 180
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=5.3e-16 Score=79.46 Aligned_cols=67 Identities=16% Similarity=0.188 Sum_probs=59.2
Q ss_pred CCccccHHH----HHHHHhcc-CCccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecCCCCC
Q 048030 1 VSFSTTKEM----LADAFSQF-GQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRR 75 (93)
Q Consensus 1 l~~~~~~~~----l~~~f~~~-g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~~ 75 (93)
||+.+++++ |+++|+.| |.|.++ ++ |+|||.|.+.++|.+|++.|+|..+.|++|+|.+++....
T Consensus 17 L~~~~~~~~lk~~L~~lF~~yGG~Vl~V-------tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v~~A~~~sd 86 (96)
T 2diu_A 17 LPANKDGKSVSNRLRRLSDNCGGKVLSI-------TG---CSAILRFINQDSAERAQKRMENEDVFGNRIIVSFTPKNRE 86 (96)
T ss_dssp CCTTSCHHHHHHHHHHHHHTTTCCEEEC-------CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSCCEEESSCCSCC
T ss_pred CCCcCCHHHHHHHHHHHHHHcCCeeEEE-------ec---CEEEEEECCHHHHHHHHHHhcCCccCCceEEEEecCCCcc
Confidence 688889887 56899999 599888 33 8999999999999999999999999999999999987765
Q ss_pred CC
Q 048030 76 YN 77 (93)
Q Consensus 76 ~~ 77 (93)
.-
T Consensus 87 ~~ 88 (96)
T 2diu_A 87 LC 88 (96)
T ss_dssp CC
T ss_pred ee
Confidence 43
No 181
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.68 E-value=3.4e-16 Score=87.97 Aligned_cols=74 Identities=26% Similarity=0.376 Sum_probs=66.5
Q ss_pred CCccccHHHHHHHHhccCCccEEEEeecCCCC--CcccEEEEEecCHHHHHHHHHHhCCCeeC---CeEEEEEecCCCC
Q 048030 1 VSFSTTKEMLADAFSQFGQVTEATIIMDKGKN--RSKGYGYVTFSTEEEAQKALADMNGKLLD---GRVIFVDNVRPSR 74 (93)
Q Consensus 1 l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~--~~~g~~fv~f~~~~~a~~a~~~l~~~~~~---g~~l~v~~~~~~~ 74 (93)
||+++++++|+++|+.||.|.++.++.++.++ .++|||||+|.+.++|.+|+..|++..+. ++.+.+.++....
T Consensus 11 Lp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~~~~~~~~~ 89 (175)
T 3nmr_A 11 VPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQMKPADSEK 89 (175)
T ss_dssp CCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCEEEECGGGC
T ss_pred CCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceEEccccccc
Confidence 78999999999999999999999999998776 89999999999999999999999998865 6778888776544
No 182
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.67 E-value=3.3e-16 Score=80.07 Aligned_cols=66 Identities=26% Similarity=0.472 Sum_probs=54.4
Q ss_pred CCccccHHHHHHHHhccCCccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCe--eCCeEEEEEecCCCCC
Q 048030 1 VSFSTTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKL--LDGRVIFVDNVRPSRR 75 (93)
Q Consensus 1 l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~--~~g~~l~v~~~~~~~~ 75 (93)
||+++++++|+++|+.||.|.++.++.+ ++|||||+|.+.++|.+ +++.. +.|++|.|.++.++..
T Consensus 19 Lp~~~te~~L~~~F~~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~v~~a~~k~~ 86 (89)
T 3d2w_A 19 CTEDMTAEELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQS----LCGEDLIIKGISVHISNAEPKHN 86 (89)
T ss_dssp CCTTCCHHHHHHHHTTTSCEEEEECCSS-----CCSEEEEEESCHHHHHH----HTTCEEEETTEEEEEEECC----
T ss_pred CCCCCCHHHHHHHHhccCCEEEEEEeeC-----CCCEEEEEECCHHHHHH----HcCCCcccCCEEEEEEEcCCCCc
Confidence 7899999999999999999999998764 67999999999999884 45655 4599999999886643
No 183
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=1.1e-15 Score=81.08 Aligned_cols=68 Identities=26% Similarity=0.477 Sum_probs=59.7
Q ss_pred cHHHHHHHHhccCCccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecCCCCCCC
Q 048030 6 TKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYN 77 (93)
Q Consensus 6 ~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~~~~ 77 (93)
.+++|+++|++||.|.++.+ .++ ..+|||||.|.+.++|.+|+..||+..+.|+.|.|.++.++....
T Consensus 39 ~e~~l~~~f~~~G~v~~v~i-~~~---~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~l~v~~a~~~~~~~ 106 (112)
T 2dit_A 39 IREDLRVECSKFGQIRKLLL-FDR---HPDGVASVSFRDPEEADYCIQTLDGRWFGGRQITAQAWDGTTDYQ 106 (112)
T ss_dssp HHHHHHHHGGGTSCCSEEEE-ETT---CTTCEEEEECSCHHHHHHHHHHSTTCEETTEECEEEECCSCCCSS
T ss_pred HHHHHHHHHHccCCEeEEEE-ecC---CCCEEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEeCCCCCcc
Confidence 36899999999999999955 443 378999999999999999999999999999999999998765544
No 184
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.67 E-value=2.9e-16 Score=83.53 Aligned_cols=65 Identities=17% Similarity=0.314 Sum_probs=54.8
Q ss_pred CCccccHHHHHHHHhccCCccEEEEeecCCC---CCcccEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEE
Q 048030 1 VSFSTTKEMLADAFSQFGQVTEATIIMDKGK---NRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVD 68 (93)
Q Consensus 1 l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~---~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 68 (93)
||+++++++|+++|+.||.|. +.++.++.+ |+.+|||||+|.+.++|.+|+..|+ .+.|+.+.+.
T Consensus 16 Lp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~~~~ 83 (114)
T 2dnl_A 16 LPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDGKLYLCV 83 (114)
T ss_dssp CCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETTEEEEEE
T ss_pred CCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCCcEEEec
Confidence 789999999999999999999 888877666 7899999999999999999999883 2445544444
No 185
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.67 E-value=5e-16 Score=83.17 Aligned_cols=66 Identities=23% Similarity=0.380 Sum_probs=60.0
Q ss_pred HHHHHHHHhccCCccEEEEeecCC----CCCcccEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecCC
Q 048030 7 KEMLADAFSQFGQVTEATIIMDKG----KNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRP 72 (93)
Q Consensus 7 ~~~l~~~f~~~g~i~~~~~~~~~~----~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~ 72 (93)
+++|++.|++||.|.++.++.++. ++..+|++||.|.+.++|.+|+..|||..+.||.|.|.++..
T Consensus 39 eedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~GR~i~v~~~~~ 108 (118)
T 3ue2_A 39 EGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQ 108 (118)
T ss_dssp HHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEECH
T ss_pred HHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECCcEEEEEEcCh
Confidence 689999999999999999998764 356789999999999999999999999999999999998753
No 186
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.66 E-value=7.9e-16 Score=92.47 Aligned_cols=71 Identities=23% Similarity=0.357 Sum_probs=65.2
Q ss_pred CCccccHHHHH----HHHhccCCccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecCCCC
Q 048030 1 VSFSTTKEMLA----DAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSR 74 (93)
Q Consensus 1 l~~~~~~~~l~----~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~ 74 (93)
||+++++++|+ ++|+.||.|.+|.+.. +++.+|||||+|.+.++|.+|+..||+..+.|+.|.|.+++...
T Consensus 17 lp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 91 (282)
T 3pgw_A 17 LNEKIKKDELKKSLYAIFSQFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQYAKTDS 91 (282)
T ss_pred CCCCCCHHHHHHHHHHHHhccCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEEeccCc
Confidence 78899999977 8999999999998865 67889999999999999999999999999999999999997654
No 187
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.66 E-value=6.7e-16 Score=78.31 Aligned_cols=62 Identities=24% Similarity=0.535 Sum_probs=56.6
Q ss_pred CCccccHHHHHHHHhcc----C-------CccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEe
Q 048030 1 VSFSTTKEMLADAFSQF----G-------QVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDN 69 (93)
Q Consensus 1 l~~~~~~~~l~~~f~~~----g-------~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 69 (93)
||+++++++|+++|+.| | .+.++.+..+ +|||||+|.+.++|.+|+ .|++..+.|+.|.|+.
T Consensus 14 Lp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~r 86 (87)
T 2hzc_A 14 IPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAM-AFDGIIFQGQSLKIRR 86 (87)
T ss_dssp CCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESSHHHHHHHG-GGTTCEETTEECEEEC
T ss_pred CCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC------CcEEEEEcCCHHHHHHHH-hcCCCEECCeEEEEeC
Confidence 78999999999999999 8 8888887643 689999999999999999 9999999999999974
No 188
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.65 E-value=4.1e-16 Score=87.18 Aligned_cols=71 Identities=28% Similarity=0.612 Sum_probs=65.2
Q ss_pred CCccccHHHHHHHHhccCCccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecCCC
Q 048030 1 VSFSTTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPS 73 (93)
Q Consensus 1 l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~ 73 (93)
||+++++++|+++|+.||.|.++.++.++.+|.++|||||.|.+.++|..|+.. +..+.|+.|.|.++.+.
T Consensus 11 Lp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g~~i~v~~~~~~ 81 (167)
T 2cjk_A 11 LNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT--QHILDGKVIDPKRAIPR 81 (167)
T ss_dssp CCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS--CCEETTEECCCEECCCH
T ss_pred CCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc--ccccCCeEcccccccch
Confidence 789999999999999999999999999988999999999999999999999994 56889999998887644
No 189
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=3.5e-16 Score=79.66 Aligned_cols=70 Identities=24% Similarity=0.443 Sum_probs=57.7
Q ss_pred CCccccHHHHHHHHhccCCccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecCCCCCCC
Q 048030 1 VSFSTTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRYN 77 (93)
Q Consensus 1 l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~~~~ 77 (93)
||+++++++|+++|+.||.|.++.++.+ .+|||||+|.+.++|++++.. ...+.|++|.|.++.++....
T Consensus 13 Lp~~~te~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~~~~~--~~~~~g~~l~v~~a~~~~~~~ 82 (88)
T 1wf0_A 13 CTGDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQSLCGE--DLIIKGISVHISNAEPKHNSN 82 (88)
T ss_dssp CCSSSCHHHHHHHSTTTSCCCEEECCSS-----CCSCCEEECSCHHHHHHTTTC--EEEETTEEEEEECCCCCCCCC
T ss_pred CCCCCCHHHHHHHHHHcCCeeEEEEecC-----CCCEEEEEECCHHHHHHHhcC--CceeCCEEEEEEecCCCCCCC
Confidence 7899999999999999999999998754 678999999999999765331 234589999999988776543
No 190
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.63 E-value=9.8e-16 Score=90.59 Aligned_cols=65 Identities=22% Similarity=0.339 Sum_probs=56.7
Q ss_pred cHHHHHHHHhccCCccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCee------------CCeEEEEEecCCC
Q 048030 6 TKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLL------------DGRVIFVDNVRPS 73 (93)
Q Consensus 6 ~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~------------~g~~l~v~~~~~~ 73 (93)
++++|+.+|+.||.|.+|.++. .+|||||.|.+.++|+.|+..|++..+ .|+.|.|.|++..
T Consensus 156 tEe~L~~~F~~fG~I~~v~v~~------~kG~AFV~F~~~~~Ae~A~~am~g~~l~~~~~~e~~~~~~gr~L~V~wA~~~ 229 (240)
T 3u1l_A 156 IESRIRFVFSRLGDIDRIRYVE------SKNCGFVKFKYQANAEFAKEAMSNQTLLLPSDKEWDDRREGTGLLVKWANED 229 (240)
T ss_dssp HHHHHHHHHHTTSCEEEEEEEG------GGTEEEEEESSHHHHHHHHHHHTTCCCCCTTSTTGGGGGGSCCCEEEECC--
T ss_pred cHHHHHHHHHccCCEEEEEEEC------CCCEEEEEeCCHHHHHHHHHHhCCCEEeccccccccccCCCCEEEEEEccCC
Confidence 7999999999999999999875 468999999999999999999999999 8999999999876
Q ss_pred CCC
Q 048030 74 RRY 76 (93)
Q Consensus 74 ~~~ 76 (93)
++.
T Consensus 230 pnp 232 (240)
T 3u1l_A 230 PDP 232 (240)
T ss_dssp ---
T ss_pred CCH
Confidence 543
No 191
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.63 E-value=2.1e-15 Score=90.59 Aligned_cols=66 Identities=20% Similarity=0.314 Sum_probs=61.4
Q ss_pred CCccccHHHHHHHHhccCCccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeC-CeEEEEEecC
Q 048030 1 VSFSTTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLD-GRVIFVDNVR 71 (93)
Q Consensus 1 l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~-g~~l~v~~~~ 71 (93)
||.++++++|+++|+.||.|.+++++.++ +|||||+|.+.++|.+|+..||+..+. |+.|+|.|++
T Consensus 215 l~~~~~~~~l~~~F~~~G~i~~v~~~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ak 281 (282)
T 3pgw_A 215 LPEETNELMLSMLFNQFPGFKEVRLVPGR-----HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAK 281 (282)
T ss_pred CCCcCCHHHHHHHHHhcCCeEEEEEecCC-----CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEec
Confidence 68899999999999999999999998553 579999999999999999999999999 9999999986
No 192
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.63 E-value=1.4e-15 Score=89.25 Aligned_cols=68 Identities=25% Similarity=0.385 Sum_probs=63.3
Q ss_pred CCc-cccHHHHHHHHhccCCccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecCCC
Q 048030 1 VSF-STTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPS 73 (93)
Q Consensus 1 l~~-~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~ 73 (93)
||+ ++++++|+++|+.||.|.++.++.++ +|||||+|.+.++|.+|+..|++..+.|+.|.|.+++..
T Consensus 42 Lp~~~~te~~L~~~F~~~G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~~~ 110 (229)
T 2adc_A 42 LNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQ 110 (229)
T ss_dssp CCTTTCCHHHHHHHHHHHTCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEECCSCC
T ss_pred CCcccCCHHHHHHHHHhCCCeEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEecCc
Confidence 688 89999999999999999999998764 689999999999999999999999999999999999755
No 193
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.61 E-value=3.1e-15 Score=90.26 Aligned_cols=75 Identities=16% Similarity=0.286 Sum_probs=62.6
Q ss_pred CCccccHHHHHHHHhccC-CccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecCCCCCC
Q 048030 1 VSFSTTKEMLADAFSQFG-QVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRRY 76 (93)
Q Consensus 1 l~~~~~~~~l~~~f~~~g-~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~~~ 76 (93)
||+++++++|+.+|+.|| .|..+.++.++. +..+|||||.|.+.++|..|+..|++..+.|+.|.|.++.+....
T Consensus 125 lp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 200 (292)
T 2ghp_A 125 FPPSYTQRNIRDLLQDINVVALSIRLPSLRF-NTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVSNPLEKS 200 (292)
T ss_dssp CCTTCCHHHHHHHHHHTTCCCCEEECC--------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCCC---
T ss_pred CCCCCCHHHHHHHHHHhCCCeEEEEEEeCCC-CCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECCCCccc
Confidence 689999999999999999 999999988874 788999999999999999999999999999999999998866543
No 194
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.61 E-value=4e-15 Score=79.20 Aligned_cols=61 Identities=20% Similarity=0.330 Sum_probs=55.9
Q ss_pred HHHHHHHHhccCCccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecC
Q 048030 7 KEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVR 71 (93)
Q Consensus 7 ~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 71 (93)
+++|++.|++||.|.++.+.++. .+|++||.|.+.++|.+|+..|||..+.|+.|.|.++.
T Consensus 31 ~edl~~~f~kfG~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~lnG~~f~GR~i~v~~~~ 91 (114)
T 3s6e_A 31 KDDVIEECNKHGGVIHIYVDKNS----AQGNVYVKCPSIAAAIAAVNALHGRWFAGKMITAAYVP 91 (114)
T ss_dssp HHHHHHHHTTTTCCSEEEECTTC----TTCCEEEECSSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred HHHHHHHHhccCCEEEEEEecCC----CcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEEc
Confidence 46899999999999999886553 48999999999999999999999999999999999986
No 195
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.61 E-value=2.1e-15 Score=86.58 Aligned_cols=68 Identities=25% Similarity=0.385 Sum_probs=63.1
Q ss_pred CCc-cccHHHHHHHHhccCCccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecCCC
Q 048030 1 VSF-STTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPS 73 (93)
Q Consensus 1 l~~-~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~ 73 (93)
||+ ++++++|+++|+.||.|.++.++.++ +|||||+|.+.++|..|+..|++..+.|+.|.|.+++..
T Consensus 11 lp~~~~~~~~l~~~F~~~G~i~~v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~~~ 79 (198)
T 1qm9_A 11 LNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQ 79 (198)
T ss_dssp CCSSSCCHHHHHHHHHTTCCCSEEECSTTC-----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECCCC
T ss_pred CCcccCCHHHHHHHHHhcCCEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEecCC
Confidence 688 89999999999999999999997764 679999999999999999999999999999999999755
No 196
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.59 E-value=9.5e-15 Score=87.22 Aligned_cols=74 Identities=32% Similarity=0.547 Sum_probs=65.9
Q ss_pred CCccccHHHHHHHHhccCCccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCC-CeeC---CeEEEEEecCCCCC
Q 048030 1 VSFSTTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNG-KLLD---GRVIFVDNVRPSRR 75 (93)
Q Consensus 1 l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~-~~~~---g~~l~v~~~~~~~~ 75 (93)
||+.+++++|+.+|+.||.|..+.++.+. +|.++|||||.|.+.++|.+|+..|++ ..+. +++|.|.++.....
T Consensus 104 l~~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v~~~~~~~~ 181 (261)
T 3sde_A 104 LSPVVSNELLEQAFSQFGPVEKAVVVVDD-RGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVEPMEQFDD 181 (261)
T ss_dssp CCTTCCHHHHHHHHGGGSCEEEEEEEEET-TSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEEEECCCEES
T ss_pred CCCCCCHHHHHHHHHhcCCeEEEEeeeCC-CCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEEeeccccCc
Confidence 68899999999999999999999999994 899999999999999999999999955 4444 89999999876543
No 197
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.59 E-value=4.1e-15 Score=85.31 Aligned_cols=68 Identities=22% Similarity=0.262 Sum_probs=62.0
Q ss_pred CCccccHHHHHHHHhccC-CccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeC-CeEEEEEecCCC
Q 048030 1 VSFSTTKEMLADAFSQFG-QVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLD-GRVIFVDNVRPS 73 (93)
Q Consensus 1 l~~~~~~~~l~~~f~~~g-~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~-g~~l~v~~~~~~ 73 (93)
||.++++++|+++|+.|| .|..+.++.+ .+|+|||+|.+.++|.+|+..|++..+. |+.|.|.+++++
T Consensus 128 l~~~~~~~~l~~~f~~~G~~v~~v~i~~~-----~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~~ 197 (198)
T 1qm9_A 128 IPPSVSEEDLKVLFSSNGGVVKGFKFFQK-----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 197 (198)
T ss_dssp CCTTCCHHHHHHHHHHTTSCCCEEEESST-----TSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEECCC
T ss_pred CCCCCCHHHHHHHHHHcCCCceEEEEEeC-----CCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEeeccc
Confidence 688999999999999999 9999988653 2689999999999999999999999999 999999998764
No 198
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.59 E-value=7.4e-16 Score=86.83 Aligned_cols=73 Identities=21% Similarity=0.329 Sum_probs=62.9
Q ss_pred CCccccHHHHHHHHhccCCccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecCCCCC
Q 048030 1 VSFSTTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSRR 75 (93)
Q Consensus 1 l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~~ 75 (93)
||+++++++|+++|..||.+.. .++.+..++..+|||||+|.+.++|.+|+. |++..+.|+.|.|.++.+...
T Consensus 21 Lp~~~t~~~l~~~f~~~g~~~~-~~~~~~~~~~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~v~~~~~~~~ 93 (175)
T 1fje_B 21 LNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKPKGRDS 93 (175)
T ss_dssp CCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGEEETTEEEEEECCCCSSC
T ss_pred CCCCCCHHHHHHHHHHhCCcce-EEEEECCCCccccEEEEEECCHHHHHHHHh-cCCCEeCCeEEEEecCCCccc
Confidence 7899999999999999998766 233444578889999999999999999995 999999999999999886543
No 199
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.58 E-value=6.2e-15 Score=85.51 Aligned_cols=68 Identities=13% Similarity=0.219 Sum_probs=59.3
Q ss_pred CCccccHHHHHHHHhccCCc--cEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeCCe----EEEEEec
Q 048030 1 VSFSTTKEMLADAFSQFGQV--TEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGR----VIFVDNV 70 (93)
Q Consensus 1 l~~~~~~~~l~~~f~~~g~i--~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~----~l~v~~~ 70 (93)
||+++++++|+++|+.||.| ..++++.++ +..+|+|||+|.+.++|.+|+..||+..+.|+ ++.|+++
T Consensus 131 Lp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~--~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~~vk~~ 204 (205)
T 3tyt_A 131 APLEVTEENFFEICDELGVKRPTSVKVFSGK--SERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPYTLKLC 204 (205)
T ss_dssp ECTTCCHHHHHHHHHHHTCCCCSEEEECSCC--SSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCEECEEE
T ss_pred CCCCCCHHHHHHHHHhcCCcceEEEEEEcCC--CCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcceEEEec
Confidence 68899999999999999999 888887764 55669999999999999999999999999876 5666654
No 200
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.58 E-value=1.2e-14 Score=85.32 Aligned_cols=68 Identities=22% Similarity=0.262 Sum_probs=61.9
Q ss_pred CCccccHHHHHHHHhccC-CccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeC-CeEEEEEecCCC
Q 048030 1 VSFSTTKEMLADAFSQFG-QVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLD-GRVIFVDNVRPS 73 (93)
Q Consensus 1 l~~~~~~~~l~~~f~~~g-~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~-g~~l~v~~~~~~ 73 (93)
||.++++++|+++|+.|| .|..+.++.+ .+|+|||+|.+.++|.+|+..|++..+. |+.|.|.+++++
T Consensus 159 lp~~~t~~~l~~~f~~~G~~i~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a~~~ 228 (229)
T 2adc_A 159 IPPSVSEEDLKVLFSSNGGVVKGFKFFQK-----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 228 (229)
T ss_dssp CCTTCCHHHHHHHHHTTSCCEEEEEECSS-----STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECSSC
T ss_pred CCccCCHHHHHHHHHHcCCCeeEEEEEEC-----CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEecCC
Confidence 688999999999999999 9999988543 3589999999999999999999999999 999999998764
No 201
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.56 E-value=2.8e-14 Score=85.16 Aligned_cols=67 Identities=21% Similarity=0.429 Sum_probs=61.8
Q ss_pred CCccccHHHHHHHHhccCCccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecCCC
Q 048030 1 VSFSTTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPS 73 (93)
Q Consensus 1 l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~ 73 (93)
||+++++++|+.+|+.||.|..+.+.. .+|||||.|.+.++|..|+..|++..+.|+.|.|.++.+.
T Consensus 30 Lp~~~te~~l~~~F~~~G~i~~v~i~~------~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~~ 96 (261)
T 3sde_A 30 LPTDITEEDFKRLFERYGEPSEVFINR------DRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFATHG 96 (261)
T ss_dssp CCTTCCHHHHHHHTGGGCCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCCS
T ss_pred CCCCCCHHHHHHHHHhcCCEEEEEEeC------CCcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeecccC
Confidence 789999999999999999999998854 3589999999999999999999999999999999998753
No 202
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.54 E-value=1e-13 Score=79.24 Aligned_cols=67 Identities=21% Similarity=0.458 Sum_probs=57.7
Q ss_pred CCccccHHHHHHHHhccC-----------CccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEe
Q 048030 1 VSFSTTKEMLADAFSQFG-----------QVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDN 69 (93)
Q Consensus 1 l~~~~~~~~l~~~f~~~g-----------~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 69 (93)
||+++++++|+++|+.|| .+.++.+ +..+|||||+|.+.++|.+|+ .|++..+.|+.|.|.+
T Consensus 12 Lp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~------~~~~g~afV~F~~~~~A~~Al-~l~g~~~~g~~i~v~~ 84 (198)
T 2yh0_A 12 IPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI------NQDKNFAFLEFRSVDETTQAM-AFDGIIFQGQSLKIRR 84 (198)
T ss_dssp CCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEE------ETTTTEEEEEESCSHHHHHHG-GGTTEEETTEEEEEEC
T ss_pred CCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEe------cCCCCEEEEEeCCHHHHHHHH-HhcCCEEcCceEEEeC
Confidence 789999999999999994 3444443 445799999999999999999 7999999999999999
Q ss_pred cCCCC
Q 048030 70 VRPSR 74 (93)
Q Consensus 70 ~~~~~ 74 (93)
+....
T Consensus 85 ~~~~~ 89 (198)
T 2yh0_A 85 PHDYQ 89 (198)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 87653
No 203
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.52 E-value=7.9e-14 Score=78.17 Aligned_cols=67 Identities=21% Similarity=0.476 Sum_probs=57.8
Q ss_pred CCccccHHHHHHHHhcc----C-------CccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEe
Q 048030 1 VSFSTTKEMLADAFSQF----G-------QVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDN 69 (93)
Q Consensus 1 l~~~~~~~~l~~~f~~~----g-------~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 69 (93)
||+++++++|+++|+.| | .+.++.+. ..+|||||+|.+.++|.+|+ .|++..+.|+.|.|.+
T Consensus 12 Lp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~------~~~g~afV~f~~~~~A~~A~-~~~~~~~~g~~i~v~~ 84 (172)
T 2g4b_A 12 IPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN------QDKNFAFLEFRSVDETTQAM-AFDGIIFQGQSLKIRR 84 (172)
T ss_dssp CCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEE------TTTTEEEEEESSHHHHHHHG-GGTTCEETTEECEEEC
T ss_pred CCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEec------CCCCEEEEEeCCHHHHHHHH-HhCCcEecCceeeecC
Confidence 78999999999999999 6 55555553 34789999999999999999 7999999999999998
Q ss_pred cCCCC
Q 048030 70 VRPSR 74 (93)
Q Consensus 70 ~~~~~ 74 (93)
+....
T Consensus 85 ~~~~~ 89 (172)
T 2g4b_A 85 PHDYQ 89 (172)
T ss_dssp CSSCC
T ss_pred CcccC
Confidence 76554
No 204
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.42 E-value=4.9e-13 Score=82.69 Aligned_cols=65 Identities=22% Similarity=0.428 Sum_probs=55.1
Q ss_pred CCccccHHHHHHHHhccCCccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeC---Ce--EEEEEecC
Q 048030 1 VSFSTTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLD---GR--VIFVDNVR 71 (93)
Q Consensus 1 l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~---g~--~l~v~~~~ 71 (93)
|++.+++++|+++|++||.|..+.+.. .+|||||+|.+.++|.+|+..|||..+. |+ .|.|.+..
T Consensus 28 l~~~~te~~L~~~F~~~G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~~ly~~~~~ 97 (345)
T 3tht_A 28 LGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYLNFVE 97 (345)
T ss_dssp GGGTCCHHHHHHHHHTTSCEEEEECCT------TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECEEEECS
T ss_pred CCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCccccccCCceEEEEEEee
Confidence 467899999999999999998886643 4689999999999999999999999863 45 56777764
No 205
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.42 E-value=1.3e-12 Score=66.40 Aligned_cols=57 Identities=35% Similarity=0.485 Sum_probs=52.1
Q ss_pred HHHHHHHhccCCccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecCCC
Q 048030 8 EMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPS 73 (93)
Q Consensus 8 ~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~ 73 (93)
.+|...|+.||.+..++++.++ +||+|.+.+.|.+|+. |+|..++|+.|+|+.+.+.
T Consensus 30 ~~L~~~F~~~G~Vi~vr~~~d~--------~fVtF~d~~sAlaAi~-mnG~~v~Gr~LkV~lkt~d 86 (91)
T 2dnr_A 30 DELLQQFASFGEVILIRFVEDK--------MWVTFLEGSSALNVLS-LNGKELLNRTITIALKSPS 86 (91)
T ss_dssp HHHHHHHHTTCCEEEEEECSSS--------EEEEESSHHHHHHGGG-GTTCEETTEEEEEEECCCS
T ss_pred HHHHHHHHhCCCeEEEEEecCC--------EEEEECChHHHHHHHh-cCCeEeCCeEEEEEeCCCC
Confidence 5799999999999999998864 8999999999999999 9999999999999987643
No 206
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=99.38 E-value=3e-12 Score=74.75 Aligned_cols=66 Identities=23% Similarity=0.376 Sum_probs=59.3
Q ss_pred cHHHHHHHHhccCCccEEEEeecC----CCCCcccEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecC
Q 048030 6 TKEMLADAFSQFGQVTEATIIMDK----GKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVR 71 (93)
Q Consensus 6 ~~~~l~~~f~~~g~i~~~~~~~~~----~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 71 (93)
.+++|++.|++||.|.++.+..+. .++..+|++||.|.+.++|.+|+..|+|..+.||.|.+.++.
T Consensus 142 ~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~ 211 (222)
T 3dxb_A 142 LEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYD 211 (222)
T ss_dssp HHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECC
T ss_pred HHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcC
Confidence 467899999999999999998543 345889999999999999999999999999999999999875
No 207
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.29 E-value=1.1e-11 Score=63.23 Aligned_cols=55 Identities=20% Similarity=0.349 Sum_probs=50.4
Q ss_pred HHHHHHHhccCCccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecC
Q 048030 8 EMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVR 71 (93)
Q Consensus 8 ~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 71 (93)
.+|.+.|+.||.+..++++.++ +||+|.+.+.|.+|+. |+|..++|+.|+|....
T Consensus 39 ~~L~~~F~~~G~Vilvr~v~d~--------~fVtF~d~~sAl~AI~-ldG~~v~Gr~L~V~~k~ 93 (95)
T 1ufw_A 39 TELMQTLGSYGTIVLVRINQGQ--------MLVTFADSHSALSVLD-VDGMKVKGRAVKISGPS 93 (95)
T ss_dssp HHHHHHHHHHSCCSEEEEETTE--------EEEECSCSHHHHHHHH-GGGSEETTEEEEEECCC
T ss_pred HHHHHHHHHCCCEEEEEEecCc--------EEEEEcChHHHHHHHh-cCCeeeCCeEEEEeccC
Confidence 4689999999999999998874 9999999999999999 99999999999998643
No 208
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.13 E-value=2.4e-10 Score=61.15 Aligned_cols=65 Identities=20% Similarity=0.190 Sum_probs=54.9
Q ss_pred CCcc-ccHHHHHHHHhccCCccEEEEeecCCCCCcccEEEEEecC-HHHHHHHHHHhC--CCeeCCeEEEEEecC
Q 048030 1 VSFS-TTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFST-EEEAQKALADMN--GKLLDGRVIFVDNVR 71 (93)
Q Consensus 1 l~~~-~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~-~~~a~~a~~~l~--~~~~~g~~l~v~~~~ 71 (93)
|+.+ +++++|+.+|+.||.|..|.+..+.. .|||.|.+ ..+|..|+..|+ +..|.|..+.++...
T Consensus 26 l~~~~~sredLke~F~~~G~V~~Vd~~~g~~------tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~~evL~ 94 (121)
T 1owx_A 26 DLDDQTCREDLHILFSNHGEIKWIDFVRGAK------EGIILFKEKAKEALGKAKDANNGNLQLRNKEVTWEVLE 94 (121)
T ss_dssp SCCSSCCHHHHHHHTCSSCCEEEEECCTTCS------EEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEEEEECC
T ss_pred CCCCcCCHHHHHHHHHhcCCEEEEEEecCCC------EEEEEECCChHHHHHHHHHhhcCCcEEeCcEEEEEECC
Confidence 4677 99999999999999999999988763 49999999 899999999985 566888877776543
No 209
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.87 E-value=3.6e-08 Score=51.52 Aligned_cols=63 Identities=17% Similarity=0.256 Sum_probs=56.8
Q ss_pred CCccccHHHHHHHHhcc-----CCccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEe
Q 048030 1 VSFSTTKEMLADAFSQF-----GQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDN 69 (93)
Q Consensus 1 l~~~~~~~~l~~~f~~~-----g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 69 (93)
||..++...|+.+++.+ |.+..+.+..+. +-|+|.|.+...|.+|.-.|+|..+.|+.|++..
T Consensus 29 ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH------~GAivef~d~~~AgKasLaL~G~ef~gr~Lr~gT 96 (117)
T 2l9w_A 29 LSDKVSPSLICQFLQEEIHINEKDIRKILLVSDF------NGAIIIFRDSKFAAKMLMILNGSQFQGKVIRSGT 96 (117)
T ss_dssp CCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTT------TEEEEECSCHHHHHHHHHHHSSEEETTEEEEEEC
T ss_pred CCCCCCHHHHHHHHhhhhccCccceeEEEEecCC------CceEEEEccchhhHHHHhhcCCeeecCeEEEecC
Confidence 68889999999999999 999999887665 4699999999999999999999999999999864
No 210
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=98.04 E-value=2.9e-05 Score=39.79 Aligned_cols=48 Identities=25% Similarity=0.284 Sum_probs=41.0
Q ss_pred CCccccHHHHHHHHhccCCccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhC
Q 048030 1 VSFSTTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMN 56 (93)
Q Consensus 1 l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~ 56 (93)
+|+++...||.++|+.|| -..|+++-|- .||+.|.+++.|..|+..+.
T Consensus 23 FP~ewKt~DI~~lFs~fg-gv~I~WidDT-------sAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 23 FPKEWKTSDLYQLFSAFG-NIQISWIDDT-------SAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp CCTTCCHHHHHHHHTTTC-SCCCEEEETT-------EEEEECSCHHHHHHHHHHHH
T ss_pred CChhhhhHHHHHHhhccC-CEEEEEEcCC-------eEEEEecCHHHHHHHHHhcc
Confidence 478899999999999999 4577777663 69999999999999998763
No 211
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.99 E-value=0.00015 Score=37.62 Aligned_cols=61 Identities=11% Similarity=0.063 Sum_probs=52.2
Q ss_pred HHHHHHHhccCCccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecCCCC
Q 048030 8 EMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSR 74 (93)
Q Consensus 8 ~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~ 74 (93)
+.++.+|..|+.+.....+..- .-..|.|.+.++|.+|...||+..++|++++|-++.+..
T Consensus 25 ~~~e~Lf~~~~~~~tF~~lkSF------RRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~YFgq~~~ 85 (104)
T 1wey_A 25 AKFESLFRTYDKDTTFQYFKSF------KRVRINFSNPLSAADARLRLHKTEFLGKEMKLYFAQTLH 85 (104)
T ss_dssp HHHHHHHHTTCSSCEEEEETTT------TEEEEECSSTTHHHHHHHTSTTSEETTEECEEECCCCSS
T ss_pred HHHHHHHHhhCcCcceeecCcc------eEEEEEeCChHHHHHHHHHhccceecCceeEEEecCCCC
Confidence 5789999999998887776543 246899999999999999999999999999999988443
No 212
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.87 E-value=0.00014 Score=36.90 Aligned_cols=61 Identities=13% Similarity=0.153 Sum_probs=50.1
Q ss_pred CCccccHHHHHHHHhccCCccEEEEeecCCCCC--cccEEEEEecCHHHHHHHHHHhCCCeeC
Q 048030 1 VSFSTTKEMLADAFSQFGQVTEATIIMDKGKNR--SKGYGYVTFSTEEEAQKALADMNGKLLD 61 (93)
Q Consensus 1 l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~--~~g~~fv~f~~~~~a~~a~~~l~~~~~~ 61 (93)
||+.++++++.+.++....+.....+.++.+.+ ..+.|||.|.+.+++......++|..+.
T Consensus 9 LPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~ 71 (91)
T 1uw4_A 9 LPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFL 71 (91)
T ss_dssp ECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEE
T ss_pred CCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEE
Confidence 799999999999999988776666666554433 3467999999999999999999999864
No 213
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=97.82 E-value=3.4e-05 Score=39.62 Aligned_cols=48 Identities=23% Similarity=0.275 Sum_probs=41.2
Q ss_pred CCccccHHHHHHHHhccCCccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhC
Q 048030 1 VSFSTTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMN 56 (93)
Q Consensus 1 l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~ 56 (93)
+|+++...||..+|+.|| ...|+++-|- .||+.|.+++.|..|+..+.
T Consensus 13 FP~ewKt~Di~~lFs~fg-gv~I~WidDT-------sAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 13 FPKEWKTSDLYQLFSAFG-NIQISWIDDT-------SAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp CCTTCCHHHHHHHTTTSE-EEEEEEEETT-------EEEEEEEEECHHHHHHHHHT
T ss_pred CChhhhhHHHHHHHhccC-CEEEEEEcCC-------eEEEEecCHHHHHHHHHhcc
Confidence 488899999999999999 5577777663 69999999999999999775
No 214
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.73 E-value=0.00038 Score=36.95 Aligned_cols=58 Identities=17% Similarity=0.345 Sum_probs=46.8
Q ss_pred HHHHHHHHhccCCccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeCC-eEEEEEecC
Q 048030 7 KEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDG-RVIFVDNVR 71 (93)
Q Consensus 7 ~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g-~~l~v~~~~ 71 (93)
-..+...|++||.|.+.... ....+-.|.|.+..+|++||. .||..+.| --|.|....
T Consensus 37 ~~~VL~~F~~~G~Iv~~~~~------~~~NWihI~Y~s~~~A~rAL~-kNG~ii~g~~mIGV~p~~ 95 (119)
T 1wwh_A 37 ASYILLQFAQYGNILKHVMS------NTGNWMHIRYQSKLQARKALS-KDGRIFGESIMIGVKPCI 95 (119)
T ss_dssp HHHHHHHHHTTSCEEEEEEC------SSSSEEEEEESSHHHHHHHHT-TTTCEETTTEECEEEECC
T ss_pred HHHHHHHHHhhCcEEEeccC------CCCCeEEEEeCCHHHHHHHHH-hCCeEecCCEEEEEEECC
Confidence 46788899999999887651 123699999999999999999 59999975 667787753
No 215
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=97.48 E-value=0.00039 Score=37.48 Aligned_cols=65 Identities=18% Similarity=0.277 Sum_probs=47.4
Q ss_pred cHHHHHHHHhccCCccE-EEEee------------cCCCC-CcccEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecC
Q 048030 6 TKEMLADAFSQFGQVTE-ATIIM------------DKGKN-RSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVR 71 (93)
Q Consensus 6 ~~~~l~~~f~~~g~i~~-~~~~~------------~~~~~-~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 71 (93)
....+...|++||.|.+ ..... .+..+ ....|..|.|.+..+|.+||. .||..+.|.-|.|...+
T Consensus 19 ~~~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~NG~ii~G~mIGV~Py~ 97 (132)
T 3p3d_A 19 MANQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-ENGAVFNGVLLGVIPYT 97 (132)
T ss_dssp GHHHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TTTCEETTEECEEEECC
T ss_pred HHHHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hCCeEeCcEEEEEEECC
Confidence 34567888999999876 21111 00011 134689999999999999999 69999999988888775
No 216
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=97.44 E-value=0.00033 Score=38.45 Aligned_cols=36 Identities=14% Similarity=0.157 Sum_probs=29.2
Q ss_pred EEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCe
Q 048030 22 EATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKL 59 (93)
Q Consensus 22 ~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~ 59 (93)
.++++.+. ++.+||+||+|.+.++|++|+..+++..
T Consensus 2 ~~kl~ln~--~~~~G~~fV~f~~~~~A~~al~~~~~~~ 37 (158)
T 2kn4_A 2 QYKLILNG--KTLKGETTTEAVDAATAEKVFKQYANDN 37 (158)
T ss_dssp EEEEEEEC--SSCEEEEEEECSSHHHHHHHHHHHHHHH
T ss_pred cEEEEecC--ccccchhHHHHHHHHhHHHHHHhhcccC
Confidence 45666664 4689999999999999999998877643
No 217
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.42 E-value=0.0029 Score=32.73 Aligned_cols=65 Identities=22% Similarity=0.266 Sum_probs=50.3
Q ss_pred CCccccHHHHHHHHhc-c----CCccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecCCCC
Q 048030 1 VSFSTTKEMLADAFSQ-F----GQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPSR 74 (93)
Q Consensus 1 l~~~~~~~~l~~~f~~-~----g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~ 74 (93)
||++++++.|+-+|++ . |.+..++... +-|+|+|.+...|++.+.. ..+.+.+.+|.|...-+..
T Consensus 16 lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--------~~AvItF~d~~va~rVL~k-~~H~L~~~~LsV~P~~~~~ 85 (104)
T 2dhx_A 16 LPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--------CGGVLTFREPADAERVLAQ-ADHELHGAQLSLRPAPPRA 85 (104)
T ss_dssp CCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--------TEEEEEESSHHHHHHHHTC-SCCBSSSSBCEEEECCCCC
T ss_pred CCCCCChhHheEEEeCCCcCCCceeeEEEEcC--------CcEEEEEcChHHHHHHhcC-CcceecCeEEEEEcCCCCC
Confidence 6889999999999987 2 4566666532 3689999999999999882 3677889999997755443
No 218
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=97.03 E-value=0.00086 Score=36.56 Aligned_cols=42 Identities=19% Similarity=0.175 Sum_probs=37.3
Q ss_pred CCCcccEEEEEecCHHHHHHHHHHh-CCCeeCCeEEEEEecCCC
Q 048030 31 KNRSKGYGYVTFSTEEEAQKALADM-NGKLLDGRVIFVDNVRPS 73 (93)
Q Consensus 31 ~~~~~g~~fv~f~~~~~a~~a~~~l-~~~~~~g~~l~v~~~~~~ 73 (93)
.++.+|+++++|.+.+.|++|+..| |+..+.| .+.+.++...
T Consensus 9 g~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~ 51 (150)
T 2i2y_A 9 GKTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKT 51 (150)
T ss_dssp CSSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTE
T ss_pred cccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCc
Confidence 4567899999999999999999999 9999999 9999987653
No 219
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=96.90 E-value=0.00092 Score=34.23 Aligned_cols=61 Identities=11% Similarity=0.097 Sum_probs=43.1
Q ss_pred CCccccHHHHHHHHhccCCccEEEEeecCCCCC--cccEEEEEecCHHHHHHHHHHhCCCeeC
Q 048030 1 VSFSTTKEMLADAFSQFGQVTEATIIMDKGKNR--SKGYGYVTFSTEEEAQKALADMNGKLLD 61 (93)
Q Consensus 1 l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~--~~g~~fv~f~~~~~a~~a~~~l~~~~~~ 61 (93)
||+.++++++.+.++..-.+.....+..+.+.+ ....|||.|.+.++.......++|..+.
T Consensus 17 LPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~ 79 (97)
T 2l08_A 17 LPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFL 79 (97)
T ss_dssp CCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEE
T ss_pred CCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEE
Confidence 899999999888777654433222322222221 2357899999999999999999998753
No 220
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=95.87 E-value=0.0053 Score=39.69 Aligned_cols=47 Identities=17% Similarity=0.203 Sum_probs=33.2
Q ss_pred CccccHHHHHHHHhccCCccEEEEeecCCCCCcccEEEEEecCHHHHHHHHH
Q 048030 2 SFSTTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALA 53 (93)
Q Consensus 2 ~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~ 53 (93)
|..+++++|.+.|+.||.|.++..-.++ | -|+.|+|.+.+.+.+++.
T Consensus 61 ~~~~~~~~l~~y~~~~g~i~~~~~~~~~--g---~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 61 PEKISENKFLKYLSQFGPINNHFFYESF--G---LYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp CCC---CHHHHHHGGGSCCCCEEEECSS--S---EEEEEECC---CCHHHHS
T ss_pred CCCCCHHHHHHHHHhcCCcceEEEEccC--C---eEEEEEeCCHHHHHHHHh
Confidence 5678999999999999999988664432 3 599999999998887755
No 221
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=95.58 E-value=0.065 Score=35.08 Aligned_cols=49 Identities=24% Similarity=0.267 Sum_probs=39.5
Q ss_pred CccccHHHHHHHHhccCCccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCC
Q 048030 2 SFSTTKEMLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGK 58 (93)
Q Consensus 2 ~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~ 58 (93)
|..+...+|.+.|+.||. .+|.++-+. .|||.|.+.+.|..++..+...
T Consensus 448 ~~~~~~~~i~~~fs~fg~-v~V~widdt-------~a~V~~~~~~~a~~~l~~~~~~ 496 (507)
T 3d45_A 448 PKEWKTSDLYQLFSAFGN-IQISWIDDT-------SAFVSLSQPEQVQIAVNTSKYA 496 (507)
T ss_dssp CTTCCHHHHHHHGGGGCC-CEEEECSSS-------EEEEECSCHHHHHHHHHHHTTC
T ss_pred CCCCCHHHHHHHHHhcCC-EEEEEEcCC-------eEEEEECCHHHHHHHHHHHHhC
Confidence 567788999999999994 466655442 7999999999999999988543
No 222
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=83.86 E-value=0.82 Score=21.71 Aligned_cols=58 Identities=17% Similarity=0.274 Sum_probs=35.9
Q ss_pred ccHHHHHHHHhccCCcc-----EEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecC
Q 048030 5 TTKEMLADAFSQFGQVT-----EATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVR 71 (93)
Q Consensus 5 ~~~~~l~~~f~~~g~i~-----~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 71 (93)
+...+|..++..-+.+. .+.+. + .|.||+... ..+..++..|++..+.|+++.|+.++
T Consensus 13 ~~p~~ivg~i~~~~gi~~~~IG~I~i~-d-------~~s~v~v~~-~~~~~~~~~l~~~~i~g~~~~v~~~~ 75 (76)
T 2g0c_A 13 IRAVDFVGTIAKIDGVSADDIGIITIM-D-------NASYVEILN-GKGPHVLKVMKNTTVKGKQLKVNKAN 75 (76)
T ss_dssp --CHHHHHHHHTSTTCCGGGEEEEEEC-S-------SCEEEEECT-TCHHHHHHHHTTCCC---CCCEEECC
T ss_pred CCHHHHHHHHHHccCCChhhccEEEEe-C-------CcEEEEECH-HHHHHHHHHhccccCcCceEEEEECC
Confidence 34556777776554332 34442 1 378888864 56778888899999999999887654
No 223
>2cu1_A Mitogen-activated protein kinase kinase kinase 2; PB1 domain, MAPK/ERK kinase kinase 2, MEK kinase 2, MEKK 2, signaling protein; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=72.93 E-value=7.7 Score=19.86 Aligned_cols=62 Identities=15% Similarity=0.133 Sum_probs=40.9
Q ss_pred ccccHHHHHHHHh-ccCCccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCeeCCeEEEEEecCCC
Q 048030 3 FSTTKEMLADAFS-QFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADMNGKLLDGRVIFVDNVRPS 73 (93)
Q Consensus 3 ~~~~~~~l~~~f~-~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~ 73 (93)
..+.-++|..-.. .||.-.++..... -..|-..+.++.++|++.|+... .-+.|+|-...++
T Consensus 26 RPv~f~eL~~Kv~~~fGq~ldL~y~n~--------EllIpl~sQeDLDkaIellDrss-~~kSLrIlL~~~~ 88 (103)
T 2cu1_A 26 RPVKLEDLRSKAKIAFGQSMDLHYTNN--------ELVIPLTTQDDLDKAVELLDRSI-HMKSLKILLVING 88 (103)
T ss_dssp SSCCHHHHHHHHHHHHSSCEEEEECSS--------SSCEECCSHHHHHHHHHHHHHCS-SCCSEEEEEEECC
T ss_pred CCccHHHHHHHHHHHhCCeeeEEEecc--------eEEEeccCHHHHHHHHHHHccCC-cccceEEEEecCC
Confidence 3456677776665 5898888776421 35788899999999999877664 2223444444444
No 224
>1fme_A FSD-EY peptide; beta-BETA-alpha, zinc finger, designed protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1fsd_A 1fsv_A 2k6r_A* 1psv_A
Probab=47.49 E-value=12 Score=13.78 Aligned_cols=13 Identities=23% Similarity=0.417 Sum_probs=10.2
Q ss_pred ccHHHHHHHHhcc
Q 048030 5 TTKEMLADAFSQF 17 (93)
Q Consensus 5 ~~~~~l~~~f~~~ 17 (93)
-++.+|+.+.++|
T Consensus 13 rnekelrdfiekf 25 (28)
T 1fme_A 13 RNEKELRDFIEKF 25 (28)
T ss_dssp CCHHHHHHHHHHC
T ss_pred ccHHHHHHHHHHh
Confidence 3678899888876
No 225
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=45.86 E-value=39 Score=19.03 Aligned_cols=46 Identities=15% Similarity=0.262 Sum_probs=30.6
Q ss_pred ccHHHHHHHH--hccCCccEEEEeecCCCCCcccEEEEEecCH-HHHHHHHH
Q 048030 5 TTKEMLADAF--SQFGQVTEATIIMDKGKNRSKGYGYVTFSTE-EEAQKALA 53 (93)
Q Consensus 5 ~~~~~l~~~f--~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~-~~a~~a~~ 53 (93)
.+..+|++.| +.|.++. ++.++++ ..++|++.|.|.+. .-...|+.
T Consensus 33 ~s~~~l~~~~~~~~F~p~k-v~~l~~~--~Gh~g~aIv~F~~dw~Gf~~A~~ 81 (172)
T 4e8u_A 33 ESGSKLRDEYILRGFNPTR-VRPLWNY--LGHSGTAIVEFNKDWNGLHNGLL 81 (172)
T ss_dssp CCSHHHHHHHHHTTCCCSE-EEEEECS--SBEEEEEEEECCSSHHHHHHHHH
T ss_pred CCHHHHHHHHHhcCCCCce-eEecccC--CCCceeEEEEecCChHHHHHHHH
Confidence 3457888877 8898864 5556664 44789999999743 33344443
No 226
>3h7h_B Transcription elongation factor SPT5; helices surrounding beta sheet, activator, ME binding, nucleus, repressor, transcription regulation; 1.55A {Homo sapiens}
Probab=45.03 E-value=17 Score=18.61 Aligned_cols=26 Identities=23% Similarity=0.391 Sum_probs=21.6
Q ss_pred CcccEEEEEecCHHHHHHHHHHhCCC
Q 048030 33 RSKGYGYVTFSTEEEAQKALADMNGK 58 (93)
Q Consensus 33 ~~~g~~fv~f~~~~~a~~a~~~l~~~ 58 (93)
..+||-||+=.+..+...|+..+.+.
T Consensus 49 ~lkGyIyVEA~~~~~V~~ai~gi~~v 74 (106)
T 3h7h_B 49 HVKGYIYVEAYKQTHVKQAIEGVGNL 74 (106)
T ss_dssp TCCSEEEEEESSHHHHHHHHTTCGGG
T ss_pred CCceEEEEEeCCHHHHHHHHhcccce
Confidence 36899999999999999998866544
No 227
>1ytr_A Bacteriocin plantaricin A; antibiotic, pheromone, amphipathic helix, micelle; NMR {Synthetic}
Probab=43.70 E-value=14 Score=13.37 Aligned_cols=12 Identities=17% Similarity=0.490 Sum_probs=8.9
Q ss_pred HHHHHHHHhccC
Q 048030 7 KEMLADAFSQFG 18 (93)
Q Consensus 7 ~~~l~~~f~~~g 18 (93)
-.+++.+|.++|
T Consensus 14 ikqvkklfkkwg 25 (26)
T 1ytr_A 14 IKQVKKLFKKWG 25 (26)
T ss_dssp HHHHHHHHTTCC
T ss_pred HHHHHHHHHHcC
Confidence 357788888876
No 228
>3lpe_A Putative transcription antitermination protein NU; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} PDB: 3ewg_A
Probab=42.76 E-value=28 Score=17.17 Aligned_cols=25 Identities=24% Similarity=0.322 Sum_probs=20.6
Q ss_pred cccEEEEEecCHHHHHHHHHHhCCC
Q 048030 34 SKGYGYVTFSTEEEAQKALADMNGK 58 (93)
Q Consensus 34 ~~g~~fv~f~~~~~a~~a~~~l~~~ 58 (93)
..||.||.+...++.-.++....+.
T Consensus 49 fPGYVfVe~~~~~~~~~~I~~t~gV 73 (92)
T 3lpe_A 49 LKGYVLVEAETKGDVEELIKGMPRV 73 (92)
T ss_dssp STTEEEEEESSHHHHHHHHTTCTTE
T ss_pred cCCEEEEEEecchhHHHHHHCCCCc
Confidence 7899999999988888887766654
No 229
>3mfb_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.20A {Erwinia carotovora}
Probab=38.26 E-value=52 Score=18.24 Aligned_cols=37 Identities=32% Similarity=0.370 Sum_probs=26.8
Q ss_pred ccHHHHHHHHhccCCcc---EEEEeecCCCCCcccEEEEE
Q 048030 5 TTKEMLADAFSQFGQVT---EATIIMDKGKNRSKGYGYVT 41 (93)
Q Consensus 5 ~~~~~l~~~f~~~g~i~---~~~~~~~~~~~~~~g~~fv~ 41 (93)
.++++|+++-...|.+. ...+..+..+|..+.++|-+
T Consensus 3 ~t~~~L~~~A~~~gta~trVR~~~~~de~~G~~~v~gv~T 42 (157)
T 3mfb_A 3 LTPEKLLEAANKQGTVPSRVRYQWMEDEETGRLKAVGYHT 42 (157)
T ss_dssp CCHHHHHHHHHTTCEEEBSEEEEEEECTTTCCEEEEEEEC
T ss_pred cCHHHHHHHHHhCCcccccEEEEEEecCCCCcEEEEEEEC
Confidence 57899999999999763 34555553478888777753
No 230
>1o57_A PUR operon repressor; purine operon repressor, helix-turn-helix domain, phosphoribosyltranseferases, domain recombination, DNA binding; HET: EPE P6G 2PE PG4 1PE; 2.20A {Bacillus subtilis} SCOP: a.4.5.40 c.61.1.1 PDB: 1p4a_A*
Probab=33.94 E-value=80 Score=19.13 Aligned_cols=42 Identities=21% Similarity=0.334 Sum_probs=29.0
Q ss_pred HHHHHHhccCCccEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHh
Q 048030 9 MLADAFSQFGQVTEATIIMDKGKNRSKGYGYVTFSTEEEAQKALADM 55 (93)
Q Consensus 9 ~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l 55 (93)
-+++.|+.+|--.-..+ .|...|+-|+-+-+.+.+...+..|
T Consensus 46 ~~~~~~~~~~~~~~~~~-----~ga~gg~~~~~~~~~~~a~~~~~~l 87 (291)
T 1o57_A 46 IIKQTFEQQGIGTLLTV-----PGAAGGVKYIPKMKQAEAEEFVQTL 87 (291)
T ss_dssp HHHHHHHHTTSEEEEEE-----CSTTCEEEEEECCCHHHHHHHHHHH
T ss_pred HHHHHHHhcCCceEEEe-----cCCCCceEEcccCCHHHHHHHHHHH
Confidence 34567777765422222 5777788899999999888877654
No 231
>2exu_A Transcription initiation protein SPT4/SPT5; helixs surrounding beta sheet; 2.23A {Saccharomyces cerevisiae}
Probab=33.17 E-value=38 Score=19.55 Aligned_cols=26 Identities=12% Similarity=0.087 Sum_probs=22.3
Q ss_pred CcccEEEEEecCHHHHHHHHHHhCCC
Q 048030 33 RSKGYGYVTFSTEEEAQKALADMNGK 58 (93)
Q Consensus 33 ~~~g~~fv~f~~~~~a~~a~~~l~~~ 58 (93)
.-+||-||+=.+..+...|+..+.+.
T Consensus 147 ~lkGYIyVEA~~~~~V~~ai~Gi~~v 172 (200)
T 2exu_A 147 NYTGRIYIEAPKQSVIEKFCNGVPDI 172 (200)
T ss_dssp TSTTEEEEECSCHHHHHHHHTTCTTE
T ss_pred CCcEEEEEEECCHHHHHHHHhhhhhh
Confidence 36799999999999999998877664
No 232
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=31.62 E-value=5.1 Score=21.83 Aligned_cols=10 Identities=20% Similarity=0.939 Sum_probs=7.1
Q ss_pred cccEEEEEec
Q 048030 34 SKGYGYVTFS 43 (93)
Q Consensus 34 ~~g~~fv~f~ 43 (93)
.+||+||.-.
T Consensus 20 ~kGfGFI~~~ 29 (148)
T 3ts2_A 20 RMGFGFLSMT 29 (148)
T ss_dssp TTTEEEEEEE
T ss_pred CCCeeEEeeC
Confidence 4578888754
No 233
>2nn4_A Hypothetical protein YQGQ; novel fold, PFAM:DUF910, structural genomics, PSI-2, protein structure initiative; 2.10A {Bacillus subtilis} SCOP: a.272.1.1
Probab=30.37 E-value=24 Score=16.87 Aligned_cols=17 Identities=18% Similarity=0.239 Sum_probs=13.0
Q ss_pred cHHHHHHHHhccCCccE
Q 048030 6 TKEMLADAFSQFGQVTE 22 (93)
Q Consensus 6 ~~~~l~~~f~~~g~i~~ 22 (93)
|--|+.+++.+||.+..
T Consensus 4 tlYDVqQLLK~fG~~IY 20 (72)
T 2nn4_A 4 TFYDVQQLLKTFGHIVY 20 (72)
T ss_dssp SHHHHHHHHHTTTCCCC
T ss_pred cHHHHHHHHHHCCEEEE
Confidence 34578999999997654
No 234
>1ik9_C DNA ligase IV; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens}
Probab=30.29 E-value=35 Score=13.86 Aligned_cols=14 Identities=29% Similarity=0.392 Sum_probs=11.3
Q ss_pred cccHHHHHHHHhcc
Q 048030 4 STTKEMLADAFSQF 17 (93)
Q Consensus 4 ~~~~~~l~~~f~~~ 17 (93)
+++.++|+.+|...
T Consensus 21 d~t~~eLk~il~~m 34 (37)
T 1ik9_C 21 DTDLNQLKEVFSGI 34 (37)
T ss_dssp CCCHHHHHHHHHTC
T ss_pred cCCHHHHHHHHHHc
Confidence 57888999998765
No 235
>1jei_A Emerin; membrane protein; NMR {Synthetic} SCOP: a.140.1.1 PDB: 2odc_I 2odg_C
Probab=26.89 E-value=47 Score=14.82 Aligned_cols=17 Identities=6% Similarity=0.151 Sum_probs=13.6
Q ss_pred cccHHHHHHHHhccCCc
Q 048030 4 STTKEMLADAFSQFGQV 20 (93)
Q Consensus 4 ~~~~~~l~~~f~~~g~i 20 (93)
..+.++|+..+..+|..
T Consensus 5 ~Lsd~eLr~~L~~~G~~ 21 (53)
T 1jei_A 5 DLSDTELTTLLRRYNIP 21 (53)
T ss_dssp TCCHHHHHHHHSSSCCS
T ss_pred HcCHHHHHHHHHHhCCC
Confidence 46788999999988853
No 236
>3p8b_B Transcription antitermination protein NUSG; transcription elongation factor, RNA polymerase, transferase transcription complex; 1.80A {Pyrococcus furiosus} PDB: 3qqc_D
Probab=25.81 E-value=67 Score=17.21 Aligned_cols=26 Identities=19% Similarity=0.300 Sum_probs=21.0
Q ss_pred cccEEEEEecCHHHHHHHHHHhCCCe
Q 048030 34 SKGYGYVTFSTEEEAQKALADMNGKL 59 (93)
Q Consensus 34 ~~g~~fv~f~~~~~a~~a~~~l~~~~ 59 (93)
..||-||.+...++.-.++..+.|..
T Consensus 42 fPGYVfVe~~~~~~~~~~v~~t~gV~ 67 (152)
T 3p8b_B 42 VKGYIFVEAPNKGVVDEAIRGIRHAR 67 (152)
T ss_dssp CCSEEEEEESSHHHHHHHHTTCTTEE
T ss_pred CCcEEEEEEEchHHHHHHHhCCCCEE
Confidence 67999999998888888887776653
No 237
>1xn9_A 30S ribosomal protein S24E; beta+alpha, GFT structural genomics, protein structure initiative, PSI, NESG, MAR11; NMR {Methanosarcina mazei} SCOP: d.12.1.3
Probab=25.25 E-value=76 Score=16.12 Aligned_cols=47 Identities=13% Similarity=0.345 Sum_probs=26.8
Q ss_pred cccHHHHHHHHhc-cCC---ccEE-EEeecCCCCCcccEEEEEecCHHHHHHH
Q 048030 4 STTKEMLADAFSQ-FGQ---VTEA-TIIMDKGKNRSKGYGYVTFSTEEEAQKA 51 (93)
Q Consensus 4 ~~~~~~l~~~f~~-~g~---i~~~-~~~~~~~~~~~~g~~fv~f~~~~~a~~a 51 (93)
..+..+|++-+++ |+. ...+ .+-...+.|+..|||.| |.+.+.+...
T Consensus 29 tpsk~eirekLAk~~~~~~~~Vvv~~~~t~fG~gkstG~a~I-Yds~e~akk~ 80 (101)
T 1xn9_A 29 TPSRNDVRNKLAAMLNAPLELLVIQRIKTEYGMQESKGYAKL-YEDADRMKQV 80 (101)
T ss_dssp CCCHHHHHHHHHHHTTCCTTTEEEEEEEECSSSSEEEEEEEE-CSCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHHhh
Confidence 3566778887775 442 2333 33344556677777754 5565555443
No 238
>2g1d_A 30S ribosomal protein S24E; complete proteome, ribosome; NMR {Thermoplasma acidophilum} SCOP: d.12.1.3
Probab=24.62 E-value=77 Score=15.99 Aligned_cols=43 Identities=16% Similarity=0.297 Sum_probs=21.4
Q ss_pred cccHHHHHHHHhc-cCCccEEE----EeecCCCCCcccEEEEEecCHHH
Q 048030 4 STTKEMLADAFSQ-FGQVTEAT----IIMDKGKNRSKGYGYVTFSTEEE 47 (93)
Q Consensus 4 ~~~~~~l~~~f~~-~g~i~~~~----~~~~~~~~~~~g~~fv~f~~~~~ 47 (93)
..+..+|++-+++ |+.-.++- +-...+.|+..|||.| |.+.+.
T Consensus 30 tpsk~eirekLA~~~~~~~~~vvv~~~~t~fG~gks~G~a~I-Yds~e~ 77 (98)
T 2g1d_A 30 TPSREEIKELIAKHEGVDKELVIVDNNKQLTGKHEIEGYTKI-YADKPS 77 (98)
T ss_dssp CCCHHHHHHHHHHHHHSCSTTEECCCCCCCSSSSEEEEEEEE-ESHHHH
T ss_pred CCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHH
Confidence 3566777777765 44322222 2223345666666654 444333
No 239
>2v94_A RPS24, 30S ribosomal protein S24E; ribonucleoprotein; 1.90A {Pyrococcus abyssi} SCOP: d.12.1.3
Probab=24.43 E-value=82 Score=16.20 Aligned_cols=46 Identities=15% Similarity=0.195 Sum_probs=27.1
Q ss_pred cccHHHHHHHHhc-cCC---ccEE-EEeecCCCCCcccEEEEEecCHHHHHH
Q 048030 4 STTKEMLADAFSQ-FGQ---VTEA-TIIMDKGKNRSKGYGYVTFSTEEEAQK 50 (93)
Q Consensus 4 ~~~~~~l~~~f~~-~g~---i~~~-~~~~~~~~~~~~g~~fv~f~~~~~a~~ 50 (93)
..+..+|++-+++ |+. ...+ .+-...+.|+..|||.| |.+.+.|..
T Consensus 38 tpsk~eirekLA~~~~~~~d~Vvv~~~~T~fG~gkstG~a~I-Yds~e~akk 88 (107)
T 2v94_A 38 TPSRKDVKGKLVAMLDLNPETTVIQYIRSYFGSYKSKGYAKY-YYDKDRMLY 88 (107)
T ss_dssp CCCHHHHHHHHHHHHTCCGGGEEEEEEECCTTCSEEEEEEEE-ESSHHHHHH
T ss_pred CCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHHh
Confidence 4567778877765 443 2233 33344556777777765 666666554
No 240
>1ywx_A 30S ribosomal protein S24E; GFT MRR16, nesgc, structural genomics, PSI, protein structure initiative; NMR {Methanococcus maripaludis} SCOP: d.12.1.3
Probab=21.96 E-value=92 Score=15.87 Aligned_cols=46 Identities=15% Similarity=0.214 Sum_probs=26.7
Q ss_pred cccHHHHHHHHhc-cCC---ccEE-EEeecCCCCCcccEEEEEecCHHHHHH
Q 048030 4 STTKEMLADAFSQ-FGQ---VTEA-TIIMDKGKNRSKGYGYVTFSTEEEAQK 50 (93)
Q Consensus 4 ~~~~~~l~~~f~~-~g~---i~~~-~~~~~~~~~~~~g~~fv~f~~~~~a~~ 50 (93)
..+..+|++-+++ |+. ...+ .+-...+.|+..|||.| |.+.+.|.+
T Consensus 29 tpsk~eirekLAk~~~~~~d~Vvv~~~~T~fG~gkstG~a~I-Yds~e~akk 79 (102)
T 1ywx_A 29 TPSIKDVKMKLVAVLNANKQVLVVDTLDQIFGKLEAEGYAKI-YNDEKAMAT 79 (102)
T ss_dssp CCCHHHHHHHHHHHHTSCSTTEEEEEEEECSSSSEEEEEEEE-CSCHHHHHH
T ss_pred CCCHHHHHHHHHHHHCCCCCEEEEEccEecCCCceEEEEEEE-ECCHHHHHh
Confidence 3566777777765 442 2333 34444556777777764 566666544
No 241
>2hpu_A NOSL protein; alpha beta topology, metal transport; NMR {Achromobacter cycloclastes} SCOP: d.357.1.1 PDB: 2hq3_A
Probab=21.17 E-value=1.1e+02 Score=17.09 Aligned_cols=20 Identities=25% Similarity=0.218 Sum_probs=17.0
Q ss_pred EEEEEecCHHHHHHHHHHhC
Q 048030 37 YGYVTFSTEEEAQKALADMN 56 (93)
Q Consensus 37 ~~fv~f~~~~~a~~a~~~l~ 56 (93)
..++-|.+.++|++......
T Consensus 112 ~~l~pFa~k~dAe~Fa~~~G 131 (175)
T 2hpu_A 112 PEAVPFSSRDEAAAFVLAEG 131 (175)
T ss_dssp CCEEEESCHHHHHHHHHHTE
T ss_pred CcccCcCCHHHHHHHHHHcC
Confidence 56999999999999988643
No 242
>2lfv_A Protein DAMX; cell division, peptidoglycan binding domain, murein binding bacterial cell division protein, RNP fold, RNP domain, cell; NMR {Escherichia coli}
Probab=26.54 E-value=20 Score=18.33 Aligned_cols=52 Identities=12% Similarity=0.102 Sum_probs=29.3
Q ss_pred cHHHHHHHHhccCCccEEEEeecCCCCCc-ccEEEEEecCHHHHHHHHHHhCCC
Q 048030 6 TKEMLADAFSQFGQVTEATIIMDKGKNRS-KGYGYVTFSTEEEAQKALADMNGK 58 (93)
Q Consensus 6 ~~~~l~~~f~~~g~i~~~~~~~~~~~~~~-~g~~fv~f~~~~~a~~a~~~l~~~ 58 (93)
+++++..+....+ +..+.+......|+. --.-|-.|.+.++|.+|+..|...
T Consensus 35 ~~~~l~~f~~~~~-l~~~~v~~t~rnGk~WyvVlyG~Y~s~~~A~~A~~~LP~~ 87 (106)
T 2lfv_A 35 NYDNLNGWAKKEN-LKNYVVYETTRNGQPWYVLVSGVYASKEEAKKAVSTLPAD 87 (106)
Confidence 3455666666655 333433332212222 122345889999999999988653
Done!