BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048032
(93 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3UIM|A Chain A, Structural Basis For The Impact Of Phosphorylation On
Plant Receptor- Like Kinase Bak1 Activation
pdb|3ULZ|A Chain A, Crystal Structure Of Apo Bak1
Length = 326
Score = 44.7 bits (104), Expect = 1e-05, Method: Composition-based stats.
Identities = 20/41 (48%), Positives = 32/41 (78%), Gaps = 2/41 (4%)
Query: 55 KRYSFPNVKKMTNSF--KDELGQGGYGRVYKGKLSDGRLVA 93
KR+S ++ +++F K+ LG+GG+G+VYKG+L+DG LVA
Sbjct: 18 KRFSLRELQVASDNFXNKNILGRGGFGKVYKGRLADGXLVA 58
>pdb|3TL8|A Chain A, The Avrptob-Bak1 Complex Reveals Two Structurally
Similar Kinaseinteracting Domains In A Single Type Iii
Effector
pdb|3TL8|D Chain D, The Avrptob-Bak1 Complex Reveals Two Structurally
Similar Kinaseinteracting Domains In A Single Type Iii
Effector
pdb|3TL8|G Chain G, The Avrptob-Bak1 Complex Reveals Two Structurally
Similar Kinaseinteracting Domains In A Single Type Iii
Effector
pdb|3TL8|H Chain H, The Avrptob-Bak1 Complex Reveals Two Structurally
Similar Kinaseinteracting Domains In A Single Type Iii
Effector
Length = 349
Score = 44.3 bits (103), Expect = 2e-05, Method: Composition-based stats.
Identities = 20/41 (48%), Positives = 32/41 (78%), Gaps = 2/41 (4%)
Query: 55 KRYSFPNVKKMTNSF--KDELGQGGYGRVYKGKLSDGRLVA 93
KR+S ++ +++F K+ LG+GG+G+VYKG+L+DG LVA
Sbjct: 26 KRFSLRELQVASDNFSNKNILGRGGFGKVYKGRLADGTLVA 66
>pdb|2OIB|A Chain A, Crystal Structure Of Irak4 Kinase Domain Apo Form
pdb|2OIB|B Chain B, Crystal Structure Of Irak4 Kinase Domain Apo Form
pdb|2OIB|C Chain C, Crystal Structure Of Irak4 Kinase Domain Apo Form
pdb|2OIB|D Chain D, Crystal Structure Of Irak4 Kinase Domain Apo Form
pdb|2OIC|A Chain A, Crystal Structure Of Irak4 Kinase Domain Complexed With
Staurosporine
pdb|2OIC|B Chain B, Crystal Structure Of Irak4 Kinase Domain Complexed With
Staurosporine
pdb|2OIC|C Chain C, Crystal Structure Of Irak4 Kinase Domain Complexed With
Staurosporine
pdb|2OIC|D Chain D, Crystal Structure Of Irak4 Kinase Domain Complexed With
Staurosporine
pdb|2OID|A Chain A, Crystal Structure Of Irak4 Kinase Domain Complexed With
Amppnp
pdb|2OID|B Chain B, Crystal Structure Of Irak4 Kinase Domain Complexed With
Amppnp
pdb|2OID|C Chain C, Crystal Structure Of Irak4 Kinase Domain Complexed With
Amppnp
pdb|2OID|D Chain D, Crystal Structure Of Irak4 Kinase Domain Complexed With
Amppnp
Length = 301
Score = 31.6 bits (70), Expect = 0.11, Method: Composition-based stats.
Identities = 14/40 (35%), Positives = 26/40 (65%), Gaps = 8/40 (20%)
Query: 57 YSFPNVKKMTNSFKD--------ELGQGGYGRVYKGKLSD 88
+SF +K +TN+F + ++G+GG+G VYKG +++
Sbjct: 9 FSFYELKNVTNNFDERPISVGGNKMGEGGFGVVYKGYVNN 48
>pdb|2NRU|A Chain A, Crystal Structure Of Irak-4
pdb|2NRU|B Chain B, Crystal Structure Of Irak-4
pdb|2NRU|C Chain C, Crystal Structure Of Irak-4
pdb|2NRU|D Chain D, Crystal Structure Of Irak-4
Length = 307
Score = 31.6 bits (70), Expect = 0.11, Method: Composition-based stats.
Identities = 14/40 (35%), Positives = 26/40 (65%), Gaps = 8/40 (20%)
Query: 57 YSFPNVKKMTNSFKD--------ELGQGGYGRVYKGKLSD 88
+SF +K +TN+F + ++G+GG+G VYKG +++
Sbjct: 15 FSFYELKNVTNNFDERPISVGGNKMGEGGFGVVYKGYVNN 54
>pdb|2NRY|A Chain A, Crystal Structure Of Irak-4
pdb|2NRY|B Chain B, Crystal Structure Of Irak-4
pdb|2NRY|C Chain C, Crystal Structure Of Irak-4
pdb|2NRY|D Chain D, Crystal Structure Of Irak-4
Length = 307
Score = 31.6 bits (70), Expect = 0.11, Method: Composition-based stats.
Identities = 14/40 (35%), Positives = 26/40 (65%), Gaps = 8/40 (20%)
Query: 57 YSFPNVKKMTNSFKD--------ELGQGGYGRVYKGKLSD 88
+SF +K +TN+F + ++G+GG+G VYKG +++
Sbjct: 15 FSFYELKNVTNNFDERPISVGGNKMGEGGFGVVYKGYVNN 54
>pdb|3HGK|A Chain A, Crystal Structure Of Effect Protein Avrptob Complexed
With Kinase Pto
pdb|3HGK|B Chain B, Crystal Structure Of Effect Protein Avrptob Complexed
With Kinase Pto
pdb|3HGK|C Chain C, Crystal Structure Of Effect Protein Avrptob Complexed
With Kinase Pto
pdb|3HGK|D Chain D, Crystal Structure Of Effect Protein Avrptob Complexed
With Kinase Pto
Length = 327
Score = 31.6 bits (70), Expect = 0.11, Method: Composition-based stats.
Identities = 16/40 (40%), Positives = 25/40 (62%), Gaps = 2/40 (5%)
Query: 56 RYSFPNVKKMTNSFKDE--LGQGGYGRVYKGKLSDGRLVA 93
R ++++ TN+F + +G G +G+VYKG L DG VA
Sbjct: 28 RVPLVDLEEATNNFDHKFLIGHGVFGKVYKGVLRDGAKVA 67
>pdb|2QKW|B Chain B, Structural Basis For Activation Of Plant Immunity By
Bacterial Effector Protein Avrpto
Length = 321
Score = 31.6 bits (70), Expect = 0.11, Method: Composition-based stats.
Identities = 16/40 (40%), Positives = 25/40 (62%), Gaps = 2/40 (5%)
Query: 56 RYSFPNVKKMTNSFKDE--LGQGGYGRVYKGKLSDGRLVA 93
R ++++ TN+F + +G G +G+VYKG L DG VA
Sbjct: 28 RVPLVDLEEATNNFDHKFLIGHGVFGKVYKGVLRDGAKVA 67
>pdb|3NIZ|A Chain A, Cryptosporidium Parvum Cyclin-Dependent Kinase Cgd5_2510
With Adp Bound
Length = 311
Score = 31.6 bits (70), Expect = 0.12, Method: Composition-based stats.
Identities = 13/23 (56%), Positives = 18/23 (78%)
Query: 71 DELGQGGYGRVYKGKLSDGRLVA 93
+++G+G YG VYK K S GR+VA
Sbjct: 27 EKVGEGTYGVVYKAKDSQGRIVA 49
>pdb|2QKR|A Chain A, Cryptosporidium Parvum Cyclin-Dependent Kinase Cgd5_2510
With Indirubin 3'-Monoxime Bound
Length = 313
Score = 31.6 bits (70), Expect = 0.12, Method: Composition-based stats.
Identities = 13/23 (56%), Positives = 18/23 (78%)
Query: 71 DELGQGGYGRVYKGKLSDGRLVA 93
+++G+G YG VYK K S GR+VA
Sbjct: 27 EKVGEGTYGVVYKAKDSQGRIVA 49
>pdb|2O8Y|A Chain A, Apo Irak4 Kinase Domain
pdb|2O8Y|B Chain B, Apo Irak4 Kinase Domain
Length = 298
Score = 30.0 bits (66), Expect = 0.33, Method: Composition-based stats.
Identities = 14/40 (35%), Positives = 25/40 (62%), Gaps = 8/40 (20%)
Query: 57 YSFPNVKKMTNSFKD--------ELGQGGYGRVYKGKLSD 88
+SF +K +TN+F + + G+GG+G VYKG +++
Sbjct: 6 FSFYELKNVTNNFDERPISVGGNKXGEGGFGVVYKGYVNN 45
>pdb|4F1O|A Chain A, Crystal Structure Of The L1180t Mutant Roco4 Kinase
Domain From D. Discoideum Bound To Appcp
Length = 287
Score = 28.9 bits (63), Expect = 0.84, Method: Composition-based stats.
Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Query: 50 GSLAPKRYSFPNVKKMTNSFKDELGQGGYGRVYKGKL-SDGRLVA 93
GS PK P + ++ ++G+GG+G V+KG+L D +VA
Sbjct: 5 GSEFPKS-RLPTLADNEIEYEKQIGKGGFGLVHKGRLVKDKSVVA 48
>pdb|4F1M|A Chain A, Crystal Structure Of The G1179s Roco4 Kinase Domain
Bound To Appcp From D. Discoideum
Length = 287
Score = 28.9 bits (63), Expect = 0.84, Method: Composition-based stats.
Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Query: 50 GSLAPKRYSFPNVKKMTNSFKDELGQGGYGRVYKGKL-SDGRLVA 93
GS PK P + ++ ++G+GG+G V+KG+L D +VA
Sbjct: 5 GSEFPKS-RLPTLADNEIEYEKQIGKGGFGLVHKGRLVKDKSVVA 48
>pdb|4F0F|A Chain A, Crystal Structure Of The Roco4 Kinase Domain Bound To
Appcp From D. Discoideum
pdb|4F0G|A Chain A, Crystal Structure Of The Roco4 Kinase Domain From D.
Discoideum
pdb|4F1T|A Chain A, Crystal Structure Of The Roco4 Kinase Domain From D.
Discoideum Bound To The Rock Inhibitor H1152
Length = 287
Score = 28.9 bits (63), Expect = 0.84, Method: Composition-based stats.
Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Query: 50 GSLAPKRYSFPNVKKMTNSFKDELGQGGYGRVYKGKL-SDGRLVA 93
GS PK P + ++ ++G+GG+G V+KG+L D +VA
Sbjct: 5 GSEFPKS-RLPTLADNEIEYEKQIGKGGFGLVHKGRLVKDKSVVA 48
>pdb|3EFC|A Chain A, Crystal Structure Of Yaet Periplasmic Domain
Length = 395
Score = 26.9 bits (58), Expect = 2.6, Method: Composition-based stats.
Identities = 14/53 (26%), Positives = 24/53 (45%)
Query: 34 KVTKSDQDLEAIIRNYGSLAPKRYSFPNVKKMTNSFKDELGQGGYGRVYKGKL 86
KVTK + D++ ++ YG P+ S P + + K + R Y K+
Sbjct: 283 KVTKMEDDIKKLLGRYGYAYPRVQSMPEINDADKTVKLRVNVDAGNRFYVRKI 335
>pdb|3LVP|A Chain A, Crystal Structure Of Bisphosphorylated Igf1-R Kinase
Domain (2p) In Complex With A Bis-Azaindole Inhibitor
pdb|3LVP|B Chain B, Crystal Structure Of Bisphosphorylated Igf1-R Kinase
Domain (2p) In Complex With A Bis-Azaindole Inhibitor
pdb|3LVP|C Chain C, Crystal Structure Of Bisphosphorylated Igf1-R Kinase
Domain (2p) In Complex With A Bis-Azaindole Inhibitor
pdb|3LVP|D Chain D, Crystal Structure Of Bisphosphorylated Igf1-R Kinase
Domain (2p) In Complex With A Bis-Azaindole Inhibitor
Length = 336
Score = 26.9 bits (58), Expect = 2.6, Method: Composition-based stats.
Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 12/46 (26%)
Query: 49 YGSLAPKRYSFPNV----------KKMTNSFKDELGQGGYGRVYKG 84
Y S+ P+ +S +V +K+T S ELGQG +G VY+G
Sbjct: 23 YASVNPEYFSAADVYVPDEWEVAREKITMS--RELGQGSFGMVYEG 66
>pdb|4GT4|A Chain A, Structure Of Unliganded, Inactive Ror2 Kinase Domain
pdb|4GT4|B Chain B, Structure Of Unliganded, Inactive Ror2 Kinase Domain
Length = 308
Score = 26.9 bits (58), Expect = 3.1, Method: Composition-based stats.
Identities = 10/18 (55%), Positives = 14/18 (77%)
Query: 69 FKDELGQGGYGRVYKGKL 86
F +ELG+ +G+VYKG L
Sbjct: 30 FMEELGEDRFGKVYKGHL 47
>pdb|3ZZW|A Chain A, Crystal Structure Of The Kinase Domain Of Ror2
pdb|3ZZW|B Chain B, Crystal Structure Of The Kinase Domain Of Ror2
Length = 289
Score = 26.9 bits (58), Expect = 3.1, Method: Composition-based stats.
Identities = 10/18 (55%), Positives = 14/18 (77%)
Query: 69 FKDELGQGGYGRVYKGKL 86
F +ELG+ +G+VYKG L
Sbjct: 13 FMEELGEDRFGKVYKGHL 30
>pdb|3MTL|A Chain A, Crystal Structure Of The Pctaire1 Kinase In Complex With
Ind E804
Length = 324
Score = 26.6 bits (57), Expect = 3.6, Method: Composition-based stats.
Identities = 10/15 (66%), Positives = 12/15 (80%)
Query: 71 DELGQGGYGRVYKGK 85
D+LG+G Y VYKGK
Sbjct: 8 DKLGEGTYATVYKGK 22
>pdb|2QCZ|A Chain A, Structure Of N-Terminal Domain Of E. Coli Yaet
pdb|2QCZ|B Chain B, Structure Of N-Terminal Domain Of E. Coli Yaet
pdb|2QDF|A Chain A, Structure Of N-Terminal Domain Of E. Coli Yaet
Length = 335
Score = 26.6 bits (57), Expect = 3.8, Method: Composition-based stats.
Identities = 13/49 (26%), Positives = 22/49 (44%)
Query: 34 KVTKSDQDLEAIIRNYGSLAPKRYSFPNVKKMTNSFKDELGQGGYGRVY 82
KVTK + D++ ++ YG P+ S P + + K + R Y
Sbjct: 284 KVTKMEDDIKKLLGRYGYAYPRVQSMPEINDADKTVKLRVNVDAGNRFY 332
>pdb|1RQQ|A Chain A, Crystal Structure Of The Insulin Receptor Kinase In
Complex With The Sh2 Domain Of Aps
pdb|1RQQ|B Chain B, Crystal Structure Of The Insulin Receptor Kinase In
Complex With The Sh2 Domain Of Aps
pdb|2AUH|A Chain A, Crystal Structure Of The Grb14 Bps Region In Complex
With The Insulin Receptor Tyrosine Kinase
pdb|2B4S|B Chain B, Crystal Structure Of A Complex Between Ptp1b And The
Insulin Receptor Tyrosine Kinase
pdb|2B4S|D Chain D, Crystal Structure Of A Complex Between Ptp1b And The
Insulin Receptor Tyrosine Kinase
pdb|3BU3|A Chain A, Crystal Structure Of The Insulin Receptor Kinase In
Complex With Irs2 Krlb Peptide
pdb|3BU5|A Chain A, Crystal Structure Of The Insulin Receptor Kinase In
Complex With Irs2 Krlb Peptide And Atp
pdb|3BU6|A Chain A, Crystal Structure Of The Insulin Receptor Kinase In
Complex With Irs2 Krlb Phosphopeptide
Length = 306
Score = 26.6 bits (57), Expect = 3.9, Method: Composition-based stats.
Identities = 10/17 (58%), Positives = 12/17 (70%)
Query: 72 ELGQGGYGRVYKGKLSD 88
ELGQG +G VY+G D
Sbjct: 24 ELGQGSFGMVYEGNARD 40
>pdb|1P14|A Chain A, Crystal Structure Of A Catalytic-Loop Mutant Of The
Insulin Receptor Tyrosine Kinase
Length = 306
Score = 26.6 bits (57), Expect = 3.9, Method: Composition-based stats.
Identities = 10/17 (58%), Positives = 12/17 (70%)
Query: 72 ELGQGGYGRVYKGKLSD 88
ELGQG +G VY+G D
Sbjct: 24 ELGQGSFGMVYEGNARD 40
>pdb|1I44|A Chain A, Crystallographic Studies Of An Activation Loop Mutant Of
The Insulin Receptor Tyrosine Kinase
Length = 306
Score = 26.6 bits (57), Expect = 3.9, Method: Composition-based stats.
Identities = 10/17 (58%), Positives = 12/17 (70%)
Query: 72 ELGQGGYGRVYKGKLSD 88
ELGQG +G VY+G D
Sbjct: 24 ELGQGSFGMVYEGNARD 40
>pdb|3ETA|A Chain A, Kinase Domain Of Insulin Receptor Complexed With A
Pyrrolo Pyridine Inhibitor
pdb|3ETA|B Chain B, Kinase Domain Of Insulin Receptor Complexed With A
Pyrrolo Pyridine Inhibitor
Length = 317
Score = 26.6 bits (57), Expect = 3.9, Method: Composition-based stats.
Identities = 10/17 (58%), Positives = 12/17 (70%)
Query: 72 ELGQGGYGRVYKGKLSD 88
ELGQG +G VY+G D
Sbjct: 23 ELGQGSFGMVYEGNARD 39
>pdb|3EKK|A Chain A, Insulin Receptor Kinase Complexed With An Inhibitor
pdb|3EKN|A Chain A, Insulin Receptor Kinase Complexed With An Inhibitor
Length = 307
Score = 26.6 bits (57), Expect = 3.9, Method: Composition-based stats.
Identities = 10/17 (58%), Positives = 12/17 (70%)
Query: 72 ELGQGGYGRVYKGKLSD 88
ELGQG +G VY+G D
Sbjct: 25 ELGQGSFGMVYEGNARD 41
>pdb|2Z8C|A Chain A, Phosphorylated Insulin Receptor Tyrosine Kinase In
Complex With
(4-{[5-Carbamoyl-4-(3-Methylanilino)pyrimidin-2-
Yl]amino}phenyl)acetic Acid
Length = 303
Score = 26.6 bits (57), Expect = 3.9, Method: Composition-based stats.
Identities = 10/17 (58%), Positives = 12/17 (70%)
Query: 72 ELGQGGYGRVYKGKLSD 88
ELGQG +G VY+G D
Sbjct: 21 ELGQGSFGMVYEGNARD 37
>pdb|1IRK|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The
Human Insulin Receptor
Length = 306
Score = 26.6 bits (57), Expect = 3.9, Method: Composition-based stats.
Identities = 10/17 (58%), Positives = 12/17 (70%)
Query: 72 ELGQGGYGRVYKGKLSD 88
ELGQG +G VY+G D
Sbjct: 24 ELGQGSFGMVYEGNARD 40
>pdb|1IR3|A Chain A, Phosphorylated Insulin Receptor Tyrosine Kinase In
Complex With Peptide Substrate And Atp Analog
pdb|1GAG|A Chain A, Crystal Structure Of The Insulin Receptor Kinase In
Complex With A Bisubstrate Inhibitor
Length = 306
Score = 26.6 bits (57), Expect = 3.9, Method: Composition-based stats.
Identities = 10/17 (58%), Positives = 12/17 (70%)
Query: 72 ELGQGGYGRVYKGKLSD 88
ELGQG +G VY+G D
Sbjct: 24 ELGQGSFGMVYEGNARD 40
>pdb|3GBZ|A Chain A, Structure Of The Cmgc Cdk Kinase From Giardia Lamblia
pdb|3GC0|A Chain A, Structure Of The Cmgc Cdk Kinase From Giardia Lamblia In
Complex With Amp
Length = 329
Score = 26.2 bits (56), Expect = 4.6, Method: Composition-based stats.
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 9/47 (19%)
Query: 42 LEAIIRNYGSL----APKRYSFPNVKKMTNSFKDELGQGGYGRVYKG 84
LEA + GS+ AP S +++T +LG+G YG VYK
Sbjct: 12 LEAQTQGPGSMSVSAAPSATSIDRYRRIT-----KLGEGTYGEVYKA 53
>pdb|1JOW|B Chain B, Crystal Structure Of A Complex Of Human Cdk6 And A Viral
Cyclin
pdb|1XO2|B Chain B, Crystal Structure Of A Human Cyclin-Dependent Kinase 6
Complex With A Flavonol Inhibitor, Fisetin
pdb|2EUF|B Chain B, X-Ray Structure Of Human Cdk6-Vcyclin In Complex With
The Inhibitor Pd0332991
pdb|2F2C|B Chain B, X-Ray Structure Of Human Cdk6-Vcyclinwith The Inhibitor
Aminopurvalanol
Length = 308
Score = 26.2 bits (56), Expect = 4.8, Method: Composition-based stats.
Identities = 11/24 (45%), Positives = 17/24 (70%), Gaps = 2/24 (8%)
Query: 72 ELGQGGYGRVYKGK--LSDGRLVA 93
E+G+G YG+V+K + + GR VA
Sbjct: 18 EIGEGAYGKVFKARDLKNGGRFVA 41
>pdb|3NUP|A Chain A, Cdk6 (Monomeric) In Complex With Inhibitor
pdb|3NUX|A Chain A, Cdk6 (Monomeric) In Complex With Inhibitor
pdb|4AUA|A Chain A, Liganded X-ray Crystal Structure Of Cyclin Dependent
Kinase 6 (cdk6)
pdb|4EZ5|A Chain A, Cdk6 (monomeric) In Complex With Inhibitor
Length = 307
Score = 26.2 bits (56), Expect = 4.8, Method: Composition-based stats.
Identities = 11/24 (45%), Positives = 17/24 (70%), Gaps = 2/24 (8%)
Query: 72 ELGQGGYGRVYKGK--LSDGRLVA 93
E+G+G YG+V+K + + GR VA
Sbjct: 18 EIGEGAYGKVFKARDLKNGGRFVA 41
>pdb|1BI8|A Chain A, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
pdb|1BI8|C Chain C, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
pdb|1BI7|A Chain A, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structure Of The Cdk6-P16ink4a Tumor Suppressor
Complex
pdb|1BLX|A Chain A, P19ink4dCDK6 COMPLEX
pdb|1G3N|A Chain A, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
pdb|1G3N|E Chain E, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
Length = 326
Score = 26.2 bits (56), Expect = 4.8, Method: Composition-based stats.
Identities = 11/24 (45%), Positives = 17/24 (70%), Gaps = 2/24 (8%)
Query: 72 ELGQGGYGRVYKGK--LSDGRLVA 93
E+G+G YG+V+K + + GR VA
Sbjct: 18 EIGEGAYGKVFKARDLKNGGRFVA 41
>pdb|3Q6B|A Chain A, The High-Resolution And New Form Crystal Structure Of Bama
Potra4-5 From E.Coli
Length = 189
Score = 25.8 bits (55), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 11/37 (29%), Positives = 19/37 (51%)
Query: 34 KVTKSDQDLEAIIRNYGSLAPKRYSFPNVKKMTNSFK 70
KVTK + D++ ++ YG P+ S P + + K
Sbjct: 69 KVTKMEDDIKKLLGRYGYAYPRVQSMPEINDADKTVK 105
>pdb|1WHW|A Chain A, Solution Structure Of The N-Terminal Rna Binding Domain
From Hypothetical Protein Bab23448
Length = 99
Score = 25.4 bits (54), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 27/63 (42%), Gaps = 7/63 (11%)
Query: 36 TKSDQDLEAIIRNYGSLAPKRYSFPNVKKMTNSFK------DELGQGGYGRVYKGKLSDG 89
T S++DLE + YG L+ Y ++ K F E Y V G++ G
Sbjct: 19 TSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEV-DGQVFQG 77
Query: 90 RLV 92
R++
Sbjct: 78 RML 80
>pdb|3OG5|A Chain A, Crystal Structure Of Bama Potra45 Tandem
pdb|3OG5|B Chain B, Crystal Structure Of Bama Potra45 Tandem
Length = 166
Score = 25.0 bits (53), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 11/37 (29%), Positives = 19/37 (51%)
Query: 34 KVTKSDQDLEAIIRNYGSLAPKRYSFPNVKKMTNSFK 70
KVTK + D++ ++ YG P+ S P + + K
Sbjct: 40 KVTKXEDDIKKLLGRYGYAYPRVQSXPEINDADKTVK 76
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.137 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,444,546
Number of Sequences: 62578
Number of extensions: 87169
Number of successful extensions: 485
Number of sequences better than 100.0: 36
Number of HSP's better than 100.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 458
Number of HSP's gapped (non-prelim): 36
length of query: 93
length of database: 14,973,337
effective HSP length: 60
effective length of query: 33
effective length of database: 11,218,657
effective search space: 370215681
effective search space used: 370215681
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 45 (21.9 bits)