BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048034
(558 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3ZN3|A Chain A, N-terminal Domain Of S. Pombe Cdc23 Apc Subunit
Length = 291
Score = 110 bits (276), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 86/308 (27%), Positives = 132/308 (42%), Gaps = 45/308 (14%)
Query: 8 RNELRTAISQLNGRCLYSAAKWAAEQLVGIKQDPAKYTPSNTRFQRGSSSICRRFRTNEI 67
RN L IS+ + R L A +WAAE L G+ ++ P
Sbjct: 7 RNCLLKCISECSERGLVYAVRWAAEMLNGMNPIEMEHIP--------------------- 45
Query: 68 SSTLVAGVSYVSTPVMEED-----------EVVDSDFYLLAKSYFDCREYRRAAHVLRDQ 116
+ STP E D EV + + YLLAKSYFDC+E+ RAA+ L++
Sbjct: 46 ---------FSSTPTGEFDLDPDMANEKLLEVEEKNIYLLAKSYFDCKEFERAAYTLQNC 96
Query: 117 TGKKSVFLRCYALYLAGXXXXXXXXXXXXGPLGKSDAVNRELISLERELSTLRKNGTMDP 176
KS+FLR Y+ YLAG + NRE + L +L G DP
Sbjct: 97 KSSKSIFLRLYSKYLAGEKKSEEENETLLNTNLTLSSTNREFYYISEVLESLHYQGNKDP 156
Query: 177 FILYLYGLVLKDKGSENLARTVLVESVNSYPWNWNSWLEL----QSLCTTIDILNSINLN 232
++LYL G+V + + ++ A L V P+ W++WLEL SL T +++ +
Sbjct: 157 YLLYLSGVVYRKRKQDSKAIDFLKSCVLKAPFFWSAWLELSLSIDSLETLTTVVSQLPST 216
Query: 233 NHWMKDFFLASTYQELRMHNEALTKYEYLQGTFGFSNYLQAQIAKAQYSXXXXXXXXXXX 292
+ K F++ ++++ ++++ A K + F S YL+ Q A Y
Sbjct: 217 HIMTKIFYVYASHELHQVNSSAYEKLAEAEIIFPNSRYLKTQRALLTYDSRDFDEAESLF 276
Query: 293 XXXXXNDP 300
NDP
Sbjct: 277 ENILTNDP 284
>pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Trigonal Crystal Form)
pdb|2HYZ|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Orthorombic Crystal Form)
Length = 136
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/147 (27%), Positives = 72/147 (48%), Gaps = 17/147 (11%)
Query: 338 ESCCIIGNYYSLKGQHEKSVVYFRRALKLNKNYLSAWTLMGHEYKSIDYRAWYGLGQAYE 397
E+ +GN Y +G +++++ Y+++AL+L+ SA AWY LG AY
Sbjct: 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPR--SA-------------EAWYNLGNAYY 46
Query: 398 MMHMPFYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAI 457
A+ Y++K++ L P + W + Y + + +EAI+ Y++A + A
Sbjct: 47 KQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDY--DEAIEYYQKALELDPRSAE 104
Query: 458 ALNQLAKLHHALGRDEEAAFYYKKDLE 484
A L ++ G +EA YY+K LE
Sbjct: 105 AWYNLGNAYYKQGDYDEAIEYYQKALE 131
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 58/122 (47%), Gaps = 17/122 (13%)
Query: 327 HRVFTTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLNKNYLSAWTLMGHEYKSIDY 386
+ D E+ +GN Y +G +++++ Y+++AL+L+ SA
Sbjct: 25 QKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR--SA------------- 69
Query: 387 RAWYGLGQAYEMMHMPFYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYR 446
AWY LG AY A+ Y++K++ L P + W + Y + + +EAI+ Y+
Sbjct: 70 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDY--DEAIEYYQ 127
Query: 447 RA 448
+A
Sbjct: 128 KA 129
>pdb|3KD7|A Chain A, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|B Chain B, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|C Chain C, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|D Chain D, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|E Chain E, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
Length = 125
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 67/134 (50%), Gaps = 19/134 (14%)
Query: 338 ESCCIIGNYYSLKGQHEKSVVYFRRALKLNKNYLSAWTLMGHEY-KSIDYRAWYGLGQAY 396
E+ +GN Y +G ++K++ Y+++AL+L+ N SAW +G+ Y K DY+
Sbjct: 10 EAWKNLGNAYYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQK-------- 61
Query: 397 EMMHMPFYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEA 456
A+ Y++K++ L PN+++ W Y + + ++AI+ Y++A + + A
Sbjct: 62 --------AIEYYQKALELDPNNAKAWYRRGNAYYKQGDY--QKAIEDYQKALELDPNNA 111
Query: 457 IALNQLAKLHHALG 470
A L G
Sbjct: 112 KAKQNLGNAKQKQG 125
>pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA0|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 125
Score = 52.4 bits (124), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 64/133 (48%), Gaps = 17/133 (12%)
Query: 338 ESCCIIGNYYSLKGQHEKSVVYFRRALKLNKNYLSAWTLMGHEYKSIDYRAWYGLGQAYE 397
E+ +GN Y +G +++++ Y+++AL+L+ N + AWY LG AY
Sbjct: 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPN---------------NAEAWYNLGNAYY 54
Query: 398 MMHMPFYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAI 457
A+ Y++K++ L PN++ W + Y + + +EAI+ Y++A + + A
Sbjct: 55 KQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDY--DEAIEYYQKALELDPNNAE 112
Query: 458 ALNQLAKLHHALG 470
A L G
Sbjct: 113 AKQNLGNAKQKQG 125
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 51/98 (52%), Gaps = 2/98 (2%)
Query: 387 RAWYGLGQAYEMMHMPFYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYR 446
AWY LG AY A+ Y++K++ L PN++ W + Y + + +EAI+ Y+
Sbjct: 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDY--DEAIEYYQ 67
Query: 447 RAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLE 484
+A + + A A L ++ G +EA YY+K LE
Sbjct: 68 KALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 105
Score = 33.9 bits (76), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 52/129 (40%), Gaps = 10/129 (7%)
Query: 418 NDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAF 477
N + W + Y + + +EAI+ Y++A + + A A L ++ G +EA
Sbjct: 7 NSAEAWYNLGNAYYKQGDY--DEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIE 64
Query: 478 YYKKDLERMEAEEREGPNMVEALIFLATHCRAHNRFEDAEVYCTRLLDYTGPEKETAKSM 537
YY+K LE PN EA L +++A Y + L+ P AK
Sbjct: 65 YYQKALEL-------DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE-LDPNNAEAKQN 116
Query: 538 LRGMRMAQS 546
L + Q
Sbjct: 117 LGNAKQKQG 125
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 18/81 (22%), Positives = 36/81 (44%)
Query: 299 DPYRVEDMDMYSNVLYAKECFSALSYLAHRVFTTDKYRPESCCIIGNYYSLKGQHEKSVV 358
DP E N Y + + + D E+ +GN Y +G +++++
Sbjct: 39 DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIE 98
Query: 359 YFRRALKLNKNYLSAWTLMGH 379
Y+++AL+L+ N A +G+
Sbjct: 99 YYQKALELDPNNAEAKQNLGN 119
>pdb|2WQH|A Chain A, Crystal Structure Of Ctpr3y3
Length = 125
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 58/112 (51%), Gaps = 19/112 (16%)
Query: 338 ESCCIIGNYYSLKGQHEKSVVYFRRALKLNKNYLSAWTLMGHE-YKSIDYRAWYGLGQAY 396
E+ +GN Y +G +++++ Y+++AL+L N AW +G+ YK DY
Sbjct: 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDE-------- 61
Query: 397 EMMHMPFYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRA 448
A+ Y++K++ L PN++ W + Y + + +EAI+ Y++A
Sbjct: 62 --------AIEYYQKALELYPNNAEAWYNLGNAYYKQGDY--DEAIEYYQKA 103
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 54/113 (47%), Gaps = 9/113 (7%)
Query: 387 RAWYGLGQAYEMMHMPFYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYR 446
AWY LG AY A+ Y++K++ L PN++ W + Y + + +EAI+ Y+
Sbjct: 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDY--DEAIEYYQ 67
Query: 447 RAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEA 499
+A + A A L ++ G +EA YY+K LE PN EA
Sbjct: 68 KALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELY-------PNNAEA 113
Score = 33.1 bits (74), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 51/129 (39%), Gaps = 10/129 (7%)
Query: 418 NDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALGRDEEAAF 477
N + W + Y + + +EAI+ Y++A + A A L ++ G +EA
Sbjct: 7 NSAEAWYNLGNAYYKQGDY--DEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIE 64
Query: 478 YYKKDLERMEAEEREGPNMVEALIFLATHCRAHNRFEDAEVYCTRLLDYTGPEKETAKSM 537
YY+K LE PN EA L +++A Y + L+ P AK
Sbjct: 65 YYQKALELY-------PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELY-PNNAEAKQN 116
Query: 538 LRGMRMAQS 546
L + Q
Sbjct: 117 LGNAKQKQG 125
>pdb|1NA3|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA3|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 91
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 44/84 (52%), Gaps = 15/84 (17%)
Query: 338 ESCCIIGNYYSLKGQHEKSVVYFRRALKLNKNYLSAWTLMGHEYKSIDYRAWYGLGQAYE 397
E+ +GN Y +G +++++ Y+++AL+L+ N + AWY LG AY
Sbjct: 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPN---------------NAEAWYNLGNAYY 54
Query: 398 MMHMPFYALHYFRKSVFLQPNDSR 421
A+ Y++K++ L PN++
Sbjct: 55 KQGDYDEAIEYYQKALELDPNNAE 78
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 40/84 (47%), Gaps = 2/84 (2%)
Query: 387 RAWYGLGQAYEMMHMPFYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYR 446
AWY LG AY A+ Y++K++ L PN++ W + Y + + +EAI+ Y+
Sbjct: 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDY--DEAIEYYQ 67
Query: 447 RAANCNDSEAIALNQLAKLHHALG 470
+A + + A A L G
Sbjct: 68 KALELDPNNAEAKQNLGNAKQKQG 91
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 13/53 (24%), Positives = 29/53 (54%)
Query: 327 HRVFTTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLNKNYLSAWTLMGH 379
+ D E+ +GN Y +G +++++ Y+++AL+L+ N A +G+
Sbjct: 33 QKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGN 85
>pdb|1W3B|A Chain A, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase
Reveals Structural Similarities To Importin Alpha.
pdb|1W3B|B Chain B, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase
Reveals Structural Similarities To Importin Alpha
Length = 388
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/161 (23%), Positives = 73/161 (45%), Gaps = 21/161 (13%)
Query: 343 IGNYYSLKGQHEKSVVYFRRALKLNKNYLSAWTLMGH---EYKSID-----YRAWYGLGQ 394
+G ++ +G+ ++ +F +A+ L+ N+L A+ +G+ E + D Y L
Sbjct: 175 LGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSP 234
Query: 395 AYEMMHMPFYALHY-----------FRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIK 443
+ ++H ++Y +R+++ LQP+ + +A + + + EA
Sbjct: 235 NHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKG--SVAEAED 292
Query: 444 CYRRAANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLE 484
CY A + A +LN LA + G EEA Y+K LE
Sbjct: 293 CYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALE 333
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 37/174 (21%), Positives = 71/174 (40%), Gaps = 24/174 (13%)
Query: 343 IGNYYSLKGQHEKSVVYFRRALKLNKNYLSAWTLMGHEYKSIDYRAWYGLGQAYEMMHMP 402
+GN Y +GQ ++++ ++R AL+L +++ + + A G +
Sbjct: 73 LGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLA--------AALVAAGDMEGAVQAY 124
Query: 403 FYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQL 462
AL Y ++ + L A+ + LEEA CY +A + A+A + L
Sbjct: 125 VSALQYNPDLYCVRSDLGNLLKALGR---------LEEAKACYLKAIETQPNFAVAWSNL 175
Query: 463 AKLHHALGRDEEAAFYYKKDLERMEAEEREGPNMVEALIFLATHCRAHNRFEDA 516
+ +A G A +++K + PN ++A I L + F+ A
Sbjct: 176 GCVFNAQGEIWLAIHHFEKAVTL-------DPNFLDAYINLGNVLKEARIFDRA 222
>pdb|3HYM|B Chain B, Insights Into Anaphase Promoting Complex Tpr Subdomain
Assembly From A Cdc26-Apc6 Structure
pdb|3HYM|D Chain D, Insights Into Anaphase Promoting Complex Tpr Subdomain
Assembly From A Cdc26-Apc6 Structure
pdb|3HYM|F Chain F, Insights Into Anaphase Promoting Complex Tpr Subdomain
Assembly From A Cdc26-Apc6 Structure
pdb|3HYM|H Chain H, Insights Into Anaphase Promoting Complex Tpr Subdomain
Assembly From A Cdc26-Apc6 Structure
pdb|3HYM|J Chain J, Insights Into Anaphase Promoting Complex Tpr Subdomain
Assembly From A Cdc26-Apc6 Structure
pdb|3HYM|L Chain L, Insights Into Anaphase Promoting Complex Tpr Subdomain
Assembly From A Cdc26-Apc6 Structure
Length = 330
Score = 36.6 bits (83), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 37/84 (44%), Gaps = 1/84 (1%)
Query: 299 DPYRVEDMDMYSNVLYAKECFSALSYLAHRVFTTDKYRPESCCIIGNYYSLKG-QHEKSV 357
DP+ + ++ L + L YL+H++ P S +G YY G ++E +
Sbjct: 52 DPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLXVGHKNEHAR 111
Query: 358 VYFRRALKLNKNYLSAWTLMGHEY 381
Y +A L K Y AW GH +
Sbjct: 112 RYLSKATTLEKTYGPAWIAYGHSF 135
Score = 29.3 bits (64), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 21/37 (56%)
Query: 343 IGNYYSLKGQHEKSVVYFRRALKLNKNYLSAWTLMGH 379
IG +SL G E +V YF AL L ++ + T +GH
Sbjct: 276 IGYIHSLXGNFENAVDYFHTALGLRRDDTFSVTXLGH 312
>pdb|3AS8|A Chain A, Mama Msr-1 P41212
pdb|3ASF|A Chain A, Mama Msr-1 C2
pdb|3ASF|B Chain B, Mama Msr-1 C2
Length = 186
Score = 36.2 bits (82), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 30/160 (18%), Positives = 67/160 (41%), Gaps = 21/160 (13%)
Query: 319 FSALSYLAHRVFTTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLNKNYLSAWTLMG 378
+S + +V+ D + E +G Y G ++ R++ + + T++G
Sbjct: 24 YSEAVVMLEQVYDADAFDVEVALHLGIAYVKTGAVDRGTELLERSIADAPDNIKVATVLG 83
Query: 379 HEY-------------------KSIDYRAWYGLGQAYEMMHMPFYALHYFRKSVFLQPND 419
Y +++ + LG A + + A+ F+ ++ L+PN+
Sbjct: 84 LTYVQVQKYDLAVPLLVKVAEANPVNFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNE 143
Query: 420 SRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIAL 459
++ A+A Y EQ+ EEA+ +++A ++ A+ L
Sbjct: 144 GKVHRAIAYSY--EQMGSHEEALPHFKKANELDERSAVEL 181
>pdb|3ASD|A Chain A, Mama R50e Mutant
Length = 200
Score = 35.8 bits (81), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 31/160 (19%), Positives = 67/160 (41%), Gaps = 21/160 (13%)
Query: 319 FSALSYLAHRVFTTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLNKNYLSAWTLMG 378
+S L +V+ D + + +G Y G ++ R+L + + T++G
Sbjct: 24 YSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLG 83
Query: 379 HEY-------------------KSIDYRAWYGLGQAYEMMHMPFYALHYFRKSVFLQPND 419
Y I++ + LG A + + A+ F+ ++ L+PN+
Sbjct: 84 LTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNE 143
Query: 420 SRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIAL 459
++ A+A Y EQ+ EEA+ +++A ++ ++ L
Sbjct: 144 GKVHRAIAFSY--EQMGRHEEALPHFKKANELDEGASVEL 181
>pdb|3AS4|A Chain A, Mama Amb-1 C2221
pdb|3AS5|A Chain A, Mama Amb-1 P212121
pdb|3AS5|B Chain B, Mama Amb-1 P212121
Length = 186
Score = 35.4 bits (80), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 31/160 (19%), Positives = 67/160 (41%), Gaps = 21/160 (13%)
Query: 319 FSALSYLAHRVFTTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLNKNYLSAWTLMG 378
+S L +V+ D + + +G Y G ++ R+L + + T++G
Sbjct: 24 YSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLG 83
Query: 379 HEY-------------------KSIDYRAWYGLGQAYEMMHMPFYALHYFRKSVFLQPND 419
Y I++ + LG A + + A+ F+ ++ L+PN+
Sbjct: 84 LTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNE 143
Query: 420 SRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIAL 459
++ A+A Y EQ+ EEA+ +++A ++ ++ L
Sbjct: 144 GKVHRAIAFSY--EQMGRHEEALPHFKKANELDEGASVEL 181
>pdb|3ASG|A Chain A, Mama D159k Mutant 2
pdb|3ASG|B Chain B, Mama D159k Mutant 2
pdb|3ASH|A Chain A, Mama D159k Mutant 1
pdb|3ASH|B Chain B, Mama D159k Mutant 1
Length = 186
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 31/160 (19%), Positives = 67/160 (41%), Gaps = 21/160 (13%)
Query: 319 FSALSYLAHRVFTTDKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLNKNYLSAWTLMG 378
+S L +V+ D + + +G Y G ++ R+L + + T++G
Sbjct: 24 YSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLG 83
Query: 379 HEY-------------------KSIDYRAWYGLGQAYEMMHMPFYALHYFRKSVFLQPND 419
Y I++ + LG A + + A+ F+ ++ L+PN+
Sbjct: 84 LTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALKNLGRFDEAIDSFKIALGLRPNE 143
Query: 420 SRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIAL 459
++ A+A Y EQ+ EEA+ +++A ++ ++ L
Sbjct: 144 GKVHRAIAFSY--EQMGRHEEALPHFKKANELDEGASVEL 181
>pdb|2AVP|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
Length = 70
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
Query: 387 RAWYGLGQAYEMMHMPFYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYR 446
AWY LG AY A+ Y++K++ L P + W + Y + + +EAI+ Y+
Sbjct: 4 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDY--DEAIEYYQ 61
Query: 447 RA 448
+A
Sbjct: 62 KA 63
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 41/80 (51%), Gaps = 15/80 (18%)
Query: 338 ESCCIIGNYYSLKGQHEKSVVYFRRALKLNKNYLSAWTLMGHEYKSIDYRAWYGLGQAYE 397
E+ +GN Y +G +++++ Y+++AL+L+ SA AWY LG AY
Sbjct: 4 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPR--SA-------------EAWYNLGNAYY 48
Query: 398 MMHMPFYALHYFRKSVFLQP 417
A+ Y++K++ L P
Sbjct: 49 KQGDYDEAIEYYQKALELDP 68
>pdb|3PE3|A Chain A, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE3|B Chain B, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE3|C Chain C, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE3|D Chain D, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE4|A Chain A, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE4|C Chain C, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3TAX|A Chain A, A Neutral Diphosphate Mimic Crosslinks The Active Site Of
Human O- Glcnac Transferase
pdb|3TAX|C Chain C, A Neutral Diphosphate Mimic Crosslinks The Active Site Of
Human O- Glcnac Transferase
pdb|4AY5|A Chain A, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|B Chain B, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|C Chain C, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|D Chain D, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY6|A Chain A, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|B Chain B, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|C Chain C, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|D Chain D, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4GYW|A Chain A, Crystal Structure Of Human O-Glcnac Transferase In Complex
With Udp And A Glycopeptide
pdb|4GYW|C Chain C, Crystal Structure Of Human O-Glcnac Transferase In Complex
With Udp And A Glycopeptide
pdb|4GYY|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac And A Peptide Substrate
pdb|4GYY|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac And A Peptide Substrate
pdb|4GZ3|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With Udp
And A Thioglycopeptide
pdb|4GZ3|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With Udp
And A Thioglycopeptide
pdb|4GZ5|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|B Chain B, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|D Chain D, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ6|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|B Chain B, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|D Chain D, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
Length = 723
Score = 33.1 bits (74), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 41/80 (51%), Gaps = 2/80 (2%)
Query: 405 ALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAK 464
AL ++++++ + P + + M + ++ ++ A++CY RA N + A A + LA
Sbjct: 62 ALMHYKEAIRISPTFADAYSNMGNTLK--EMQDVQGALQCYTRAIQINPAFADAHSNLAS 119
Query: 465 LHHALGRDEEAAFYYKKDLE 484
+H G EA Y+ L+
Sbjct: 120 IHKDSGNIPEAIASYRTALK 139
>pdb|2XPI|A Chain A, Crystal Structure Of ApcC HETERO-Tetramer Cut9-Hcn1
pdb|2XPI|D Chain D, Crystal Structure Of ApcC HETERO-Tetramer Cut9-Hcn1
Length = 597
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 37/84 (44%), Gaps = 6/84 (7%)
Query: 367 NKNYLSAWTLMG-HEYKSIDYRAWYGLGQAYEMMHMPFYALHYFRKSVFLQPNDSRLWIA 425
NK YL + L+ H K++ W +G Y ++ A YF KS + P WI
Sbjct: 356 NKLYLISNDLVDRHPEKAV---TWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIG 412
Query: 426 MAQCYETEQLHMLEEAIKCYRRAA 449
A + E H ++AI Y AA
Sbjct: 413 FAHSFAIEGEH--DQAISAYTTAA 434
>pdb|2HR2|A Chain A, Crystal Structure Of A Tpr-Like Protein (Ct2138) From
Chlorobium Tepidum Tls At 2.54 A Resolution
pdb|2HR2|B Chain B, Crystal Structure Of A Tpr-Like Protein (Ct2138) From
Chlorobium Tepidum Tls At 2.54 A Resolution
pdb|2HR2|C Chain C, Crystal Structure Of A Tpr-Like Protein (Ct2138) From
Chlorobium Tepidum Tls At 2.54 A Resolution
pdb|2HR2|D Chain D, Crystal Structure Of A Tpr-Like Protein (Ct2138) From
Chlorobium Tepidum Tls At 2.54 A Resolution
pdb|2HR2|E Chain E, Crystal Structure Of A Tpr-Like Protein (Ct2138) From
Chlorobium Tepidum Tls At 2.54 A Resolution
pdb|2HR2|F Chain F, Crystal Structure Of A Tpr-Like Protein (Ct2138) From
Chlorobium Tepidum Tls At 2.54 A Resolution
Length = 159
Score = 31.6 bits (70), Expect = 1.3, Method: Composition-based stats.
Identities = 29/107 (27%), Positives = 41/107 (38%), Gaps = 32/107 (29%)
Query: 388 AWYGLGQAYEMMHMPFYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRR 447
A GL E +H ALHYF + L ++ +LWI+
Sbjct: 66 ALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVY------------------- 106
Query: 448 AANCNDSEAIALNQLAKLHHALGRDEEAAFYYKKDLERMEAEEREGP 494
S A+AL+ LGR EA +KK +E +E + E P
Sbjct: 107 ------SRALALD-------GLGRGAEAXPEFKKVVEXIEERKGETP 140
>pdb|3SF4|A Chain A, Crystal Structure Of The Complex Between The Conserved
Cell Polarity Proteins Inscuteable And Lgn
pdb|3SF4|B Chain B, Crystal Structure Of The Complex Between The Conserved
Cell Polarity Proteins Inscuteable And Lgn
pdb|3SF4|C Chain C, Crystal Structure Of The Complex Between The Conserved
Cell Polarity Proteins Inscuteable And Lgn
Length = 406
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 37/152 (24%), Positives = 62/152 (40%), Gaps = 19/152 (12%)
Query: 343 IGNYYSLKGQHEKSVVYFRRALKLNKNYLSAWTLMGHEYKSIDYRAWYGLGQAYEMMHMP 402
+GN + L G +V+ + L + K + K+ + RA+ LG AY +
Sbjct: 193 LGNTHYLLGNFRDAVIAHEQRLLIAKEFGD---------KAAERRAYSNLGNAYIFLGEF 243
Query: 403 FYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHML----EEAIKCYRR----AANCND- 453
A Y++K++ L + CY + L E+AI + + A ND
Sbjct: 244 ETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDR 303
Query: 454 -SEAIALNQLAKLHHALGRDEEAAFYYKKDLE 484
E A L + ALG ++A + +K LE
Sbjct: 304 IGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 335
>pdb|3SZ7|A Chain A, Crystal Structure Of The Sgt2 Tpr Domain From Aspergillus
Fumigatus
Length = 164
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 4/52 (7%)
Query: 347 YSLKGQHEKSVVYFRRALKLNKNYLSAWTLMG-HEYKSIDYRAWYGLGQAYE 397
YS GQHEK+ A ++ Y AW+ +G + DY+ G +AYE
Sbjct: 55 YSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARFDMADYK---GAKEAYE 103
>pdb|3VTX|A Chain A, Crystal Structure Of Mama Protein
pdb|3VTX|B Chain B, Crystal Structure Of Mama Protein
pdb|3VTY|A Chain A, Crystal Structure Of Mama
pdb|3VTY|B Chain B, Crystal Structure Of Mama
pdb|3VTY|C Chain C, Crystal Structure Of Mama
pdb|3VTY|D Chain D, Crystal Structure Of Mama
Length = 184
Score = 30.0 bits (66), Expect = 3.2, Method: Composition-based stats.
Identities = 25/113 (22%), Positives = 50/113 (44%), Gaps = 17/113 (15%)
Query: 333 DKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLNKNYLSAWTLMGHEYKSIDYRAWYGL 392
D E+ I+G+ + + + ++ +RA+ LN Y A+Y L
Sbjct: 69 DTTSAEAYYILGSANFMIDEKQAAIDALQRAIALNTVYAD---------------AYYKL 113
Query: 393 GQAYEMMHMPFYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCY 445
G Y+ M A+ + K++ ++P R + ++ YE + L +EA+K +
Sbjct: 114 GLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLR--DEAVKYF 164
>pdb|3QDN|A Chain A, Putative Thioredoxin Protein From Salmonella Typhimurium
pdb|3QDN|B Chain B, Putative Thioredoxin Protein From Salmonella Typhimurium
Length = 287
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 42/86 (48%), Gaps = 5/86 (5%)
Query: 411 KSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSEAIALNQLAKLHHALG 470
K++ LQ D+R +AQ +Q E + ++ A+ N +A QLA H +G
Sbjct: 175 KTIPLQDQDTRYQGLVAQIELLKQAADTPEIQQLQQQVAD-NPQDAALATQLALQLHQVG 233
Query: 471 RDEEAA----FYYKKDLERMEAEERE 492
R+EEA + +KDL E + R+
Sbjct: 234 RNEEALELLFSHLRKDLTAAEGQTRK 259
>pdb|2AJP|A Chain A, Crystal Structure Of A Human Pyridoxal Kinase
pdb|2AJP|B Chain B, Crystal Structure Of A Human Pyridoxal Kinase
Length = 326
Score = 30.0 bits (66), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 37/78 (47%), Gaps = 13/78 (16%)
Query: 195 ARTVLVES--VNSYPWNWNSWLELQSLCTTIDILNSINLNN-----HWMKDFF----LAS 243
+R + ++S + Y N + LQ L ID +NS+ +N HW L
Sbjct: 19 SRVLSIQSHVIRGYVGNRAATFPLQVLGFEIDAVNSVQFSNHTGYAHWKGQVLNSDELQE 78
Query: 244 TYQELRMHNEALTKYEYL 261
Y+ LR++N + KY+Y+
Sbjct: 79 LYEGLRLNN--MNKYDYV 94
>pdb|3Q15|A Chain A, Crystal Structure Of Raph Complexed With Spo0f
pdb|3Q15|B Chain B, Crystal Structure Of Raph Complexed With Spo0f
Length = 378
Score = 29.6 bits (65), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 33/134 (24%), Positives = 56/134 (41%), Gaps = 15/134 (11%)
Query: 333 DKYRPESCCIIGNYYSLKGQHEKSVVYFRRALKLNKNYLS----------AWTL--MGHE 380
D++ S I N Y G + +V +F++A K+++ + +WTL G
Sbjct: 218 DRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQT 277
Query: 381 YKSIDYRAWYGLGQAYEMMHMPFYALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEE 440
K+ + GL H + L F ++V+ + D R + +E + LH E
Sbjct: 278 QKAFQFIEE-GLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIE 336
Query: 441 AIKCYRRAANCNDS 454
A C R AA +S
Sbjct: 337 A--CARSAAAVFES 348
>pdb|2F7K|A Chain A, Crystal Structure Of Human Pyridoxal Kinase
pdb|2F7K|B Chain B, Crystal Structure Of Human Pyridoxal Kinase
Length = 327
Score = 29.6 bits (65), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 11/68 (16%)
Query: 203 VNSYPWNWNSWLELQSLCTTIDILNSINLNN-----HWMKDFF----LASTYQELRMHNE 253
+ Y N + LQ L ID +NS+ +N HW L Y+ LR++N
Sbjct: 30 IRGYVGNRAATFPLQVLGFEIDAVNSVQFSNHTGYAHWKGQVLNSDELQELYEGLRLNN- 88
Query: 254 ALTKYEYL 261
+ KY+Y+
Sbjct: 89 -MNKYDYV 95
>pdb|3R9A|B Chain B, Human Alanine-Glyoxylate Aminotransferase In Complex With
The Tpr Domain Of Human Pex5p
pdb|3R9A|D Chain D, Human Alanine-Glyoxylate Aminotransferase In Complex With
The Tpr Domain Of Human Pex5p
Length = 328
Score = 29.6 bits (65), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 40/85 (47%), Gaps = 5/85 (5%)
Query: 364 LKLNKNYLSAWTLMGHEYKSIDYRAWYGLGQAYEMMHMPFYALHYFRKSVFLQPNDSRLW 423
L++ + +L+A L + SID GLG + + A+ F ++ ++PND LW
Sbjct: 158 LEVKELFLAAVRL---DPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLW 214
Query: 424 IAMAQCYETEQLHMLEEAIKCYRRA 448
+ + EEA+ YRRA
Sbjct: 215 NKLGATLANG--NQSEEAVAAYRRA 237
>pdb|2C0M|A Chain A, Apo Form Of The Tpr Domain Of The Pex5p Receptor
pdb|2C0M|B Chain B, Apo Form Of The Tpr Domain Of The Pex5p Receptor
pdb|2C0M|C Chain C, Apo Form Of The Tpr Domain Of The Pex5p Receptor
pdb|2C0M|F Chain F, Apo Form Of The Tpr Domain Of The Pex5p Receptor
Length = 319
Score = 29.6 bits (65), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 40/85 (47%), Gaps = 5/85 (5%)
Query: 364 LKLNKNYLSAWTLMGHEYKSIDYRAWYGLGQAYEMMHMPFYALHYFRKSVFLQPNDSRLW 423
L++ + +L+A L + SID GLG + + A+ F ++ ++PND LW
Sbjct: 149 LEVKELFLAAVRL---DPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLW 205
Query: 424 IAMAQCYETEQLHMLEEAIKCYRRA 448
+ + EEA+ YRRA
Sbjct: 206 NKLGATLANG--NQSEEAVAAYRRA 228
>pdb|3FHX|A Chain A, Crystal Structure Of D235a Mutant Of Human Pyridoxal
Kinase
pdb|3FHX|B Chain B, Crystal Structure Of D235a Mutant Of Human Pyridoxal
Kinase
Length = 312
Score = 29.6 bits (65), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 11/68 (16%)
Query: 203 VNSYPWNWNSWLELQSLCTTIDILNSINLNN-----HWMKDFF----LASTYQELRMHNE 253
+ Y N + LQ L ID +NS+ +N HW L Y+ LR++N
Sbjct: 15 IRGYVGNRAATFPLQVLGFEIDAVNSVQFSNHTGYAHWKGQVLNSDELQELYEGLRLNN- 73
Query: 254 ALTKYEYL 261
+ KY+Y+
Sbjct: 74 -MNKYDYV 80
>pdb|2J9Q|A Chain A, A Novel Conformation For The Tpr Domain Of Pex5p
pdb|2J9Q|B Chain B, A Novel Conformation For The Tpr Domain Of Pex5p
Length = 328
Score = 29.6 bits (65), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 40/85 (47%), Gaps = 5/85 (5%)
Query: 364 LKLNKNYLSAWTLMGHEYKSIDYRAWYGLGQAYEMMHMPFYALHYFRKSVFLQPNDSRLW 423
L++ + +L+A L + SID GLG + + A+ F ++ ++PND LW
Sbjct: 158 LEVKELFLAAVRL---DPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLW 214
Query: 424 IAMAQCYETEQLHMLEEAIKCYRRA 448
+ + EEA+ YRRA
Sbjct: 215 NKLGATLANG--NQSEEAVAAYRRA 237
>pdb|2YXT|A Chain A, Human Pyridoxal Kinase
pdb|2YXT|B Chain B, Human Pyridoxal Kinase
pdb|2YXU|A Chain A, Human Pyridoxal Kinase
pdb|2YXU|B Chain B, Human Pyridoxal Kinase
pdb|3KEU|A Chain A, Crystal Structure Of Human Pl Kinase With Bound Plp And
Atp
pdb|3KEU|B Chain B, Crystal Structure Of Human Pl Kinase With Bound Plp And
Atp
pdb|4EN4|A Chain A, Crystal Structure Of The Ternary Human Pl
Kinase-Ginkgotoxin-Mgatp Complex
pdb|4EN4|B Chain B, Crystal Structure Of The Ternary Human Pl
Kinase-Ginkgotoxin-Mgatp Complex
pdb|4EOH|A Chain A, Crystal Structure Of Human Pl Kinase With Bound
Theophylline
pdb|4EOH|B Chain B, Crystal Structure Of Human Pl Kinase With Bound
Theophylline
Length = 312
Score = 29.6 bits (65), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 11/68 (16%)
Query: 203 VNSYPWNWNSWLELQSLCTTIDILNSINLNN-----HWMKDFF----LASTYQELRMHNE 253
+ Y N + LQ L ID +NS+ +N HW L Y+ LR++N
Sbjct: 15 IRGYVGNRAATFPLQVLGFEIDAVNSVQFSNHTGYAHWKGQVLNSDELQELYEGLRLNN- 73
Query: 254 ALTKYEYL 261
+ KY+Y+
Sbjct: 74 -MNKYDYV 80
>pdb|2KCK|A Chain A, Nmr Solution Structure Of The Northeast Structural
Genomics Consortium (Nesg) Target Mrr121a
Length = 112
Score = 29.6 bits (65), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 14/51 (27%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
Query: 405 ALHYFRKSVFLQPNDSRLWIAMAQCYETEQLHMLEEAIKCYRRAANCNDSE 455
++ F K++ L P +S+ W+ + L EEA+ CY N + E
Sbjct: 25 SIDLFEKAIQLDPEESKYWLMKGKA--LYNLERYEEAVDCYNYVINVIEDE 73
>pdb|3FHY|A Chain A, Crystal Structure Of D235n Mutant Of Human Pyridoxal
Kinase
pdb|3FHY|B Chain B, Crystal Structure Of D235n Mutant Of Human Pyridoxal
Kinase
Length = 312
Score = 29.6 bits (65), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 11/68 (16%)
Query: 203 VNSYPWNWNSWLELQSLCTTIDILNSINLNN-----HWMKDFF----LASTYQELRMHNE 253
+ Y N + LQ L ID +NS+ +N HW L Y+ LR++N
Sbjct: 15 IRGYVGNRAATFPLQVLGFEIDAVNSVQFSNHTGYAHWKGQVLNSDELQELYEGLRLNN- 73
Query: 254 ALTKYEYL 261
+ KY+Y+
Sbjct: 74 -MNKYDYV 80
>pdb|2C0L|A Chain A, Tpr Domain Of Human Pex5p In Complex With Human Mscp2
Length = 305
Score = 29.6 bits (65), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 40/85 (47%), Gaps = 5/85 (5%)
Query: 364 LKLNKNYLSAWTLMGHEYKSIDYRAWYGLGQAYEMMHMPFYALHYFRKSVFLQPNDSRLW 423
L++ + +L+A L + SID GLG + + A+ F ++ ++PND LW
Sbjct: 135 LEVKELFLAAVRL---DPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLW 191
Query: 424 IAMAQCYETEQLHMLEEAIKCYRRA 448
+ + EEA+ YRRA
Sbjct: 192 NKLGATLANG--NQSEEAVAAYRRA 214
>pdb|1CEN|A Chain A, Cellulase (Celc) Mutant With Glu 140 Replaced By Gln
Complexed With Cellohexaose
pdb|1CEO|A Chain A, Cellulase (Celc) Mutant With Glu 140 Replaced By Gln
Length = 343
Score = 29.3 bits (64), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 5/53 (9%)
Query: 390 YGLGQAYEMMHMPFYALHYFRKS-VFLQPNDSR----LWIAMAQCYETEQLHM 437
Y LG +M H P Y F+ S +F PN + +W +A+ Y E+ H+
Sbjct: 81 YNLGLVLDMHHAPGYRFQDFKTSTLFEDPNQQKRFVDIWRFLAKRYINEREHI 133
>pdb|1CEC|A Chain A, A Common Protein Fold And Similar Active Site In Two
Distinct Families Of Beta-Glycanases
Length = 343
Score = 29.3 bits (64), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 5/53 (9%)
Query: 390 YGLGQAYEMMHMPFYALHYFRKS-VFLQPNDSR----LWIAMAQCYETEQLHM 437
Y LG +M H P Y F+ S +F PN + +W +A+ Y E+ H+
Sbjct: 81 YNLGLVLDMHHAPGYRFQDFKTSTLFEDPNQQKRFVDIWRFLAKRYINEREHI 133
>pdb|1FCH|A Chain A, Crystal Structure Of The Pts1 Complexed To The Tpr Region
Of Human Pex5
pdb|1FCH|B Chain B, Crystal Structure Of The Pts1 Complexed To The Tpr Region
Of Human Pex5
Length = 368
Score = 29.3 bits (64), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 40/85 (47%), Gaps = 5/85 (5%)
Query: 364 LKLNKNYLSAWTLMGHEYKSIDYRAWYGLGQAYEMMHMPFYALHYFRKSVFLQPNDSRLW 423
L++ + +L+A L + SID GLG + + A+ F ++ ++PND LW
Sbjct: 198 LEVKELFLAAVRL---DPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLW 254
Query: 424 IAMAQCYETEQLHMLEEAIKCYRRA 448
+ + EEA+ YRRA
Sbjct: 255 NKLGATLANG--NQSEEAVAAYRRA 277
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.133 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,513,675
Number of Sequences: 62578
Number of extensions: 593100
Number of successful extensions: 1471
Number of sequences better than 100.0: 39
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 28
Number of HSP's that attempted gapping in prelim test: 1374
Number of HSP's gapped (non-prelim): 96
length of query: 558
length of database: 14,973,337
effective HSP length: 104
effective length of query: 454
effective length of database: 8,465,225
effective search space: 3843212150
effective search space used: 3843212150
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)